HHsearch alignment for GI: 254780413 and conserved domain: PRK11107
>PRK11107 hybrid sensory histidine kinase BarA; Provisional.
Probab=100.00 E-value=0 Score=525.34 Aligned_cols=241 Identities=35% Similarity=0.556 Sum_probs=223.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76544668878999999999985234531748999999999973126877888999999999998999999999999986
Q gi|254780413|r 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 (820)
Q Consensus 569 ~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~s 648 (820)
T Consensus 277 ~el~~ak~~A~~A~r~Ks~FLAnmSHEiRTPLn~IiG~~~ll~~~~l----~~~q~~~l~~i~~s~~~Ll~lIndiLD~S 352 (920)
T PRK11107 277 VELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPL----TPTQRDYLQTIERSANNLLAIINDILDFS 352 (920)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHCHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999996648654219999999999856999----99999999999999999999999999999
Q ss_pred HHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC-EEEECHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 64318852000331799999999999999987378089997379884-68988899999999999888871889787999
Q gi|254780413|r 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727 (820)
Q Consensus 649 rieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp-~v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v 727 (820)
T Consensus 353 kiEag~l~le~~~f~l~~~~~~v~~~~~~~a~~k~l~l~~~~~~~~p~~v~gD~~Rl~QIl~NLl~NAiKfT~~G~-I~v 431 (920)
T PRK11107 353 KLEAGKLILENIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGN-IDI 431 (920)
T ss_pred HHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCCC-EEE
T ss_conf 9845983674016789999999999999999973987999978999730653899999999999999997188993-799
Q ss_pred EEEEC--CCC--EEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEE
Q ss_conf 99980--499--49999997889789888664237718734787666788860689999999961986999978899539
Q gi|254780413|r 728 STTHT--SNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 (820)
Q Consensus 728 ~~~~~--~~~--~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~ 803 (820)
T Consensus 432 ~v~~~~~~~~~~~l~~~V~DTGiGI~~~~~~~iF~~F~q~d~s~~r~~gGtGLGLaI~k~Lv~~mgG~I~v~S~~g~GS~ 511 (920)
T PRK11107 432 LVELRALSDEKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGST 511 (920)
T ss_pred EEEEEECCCCEEEEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCEE
T ss_conf 99999647984899999999705869999997854201567654456798774299999999980991799954899748
Q ss_pred EEEEECCCCCC
Q ss_conf 99996357778
Q gi|254780413|r 804 IEIIFPLYDTS 814 (820)
Q Consensus 804 f~v~lP~~~~~ 814 (820)
T Consensus 512 F~Ftlpl~~~~ 522 (920)
T PRK11107 512 FWFHLPLDLNP 522 (920)
T ss_pred EEEEEECCCCC
T ss_conf 99999804766