HHsearch alignment for GI: 254780413 and conserved domain: PRK11107

>PRK11107 hybrid sensory histidine kinase BarA; Provisional.
Probab=100.00  E-value=0  Score=525.34  Aligned_cols=241  Identities=35%  Similarity=0.556  Sum_probs=223.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             76544668878999999999985234531748999999999973126877888999999999998999999999999986
Q gi|254780413|r  569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS  648 (820)
Q Consensus       569 ~el~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~s  648 (820)
T Consensus       277 ~el~~ak~~A~~A~r~Ks~FLAnmSHEiRTPLn~IiG~~~ll~~~~l----~~~q~~~l~~i~~s~~~Ll~lIndiLD~S  352 (920)
T PRK11107        277 VELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPL----TPTQRDYLQTIERSANNLLAIINDILDFS  352 (920)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCHHHHCHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999996648654219999999999856999----99999999999999999999999999999


Q ss_pred             HHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC-EEEECHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             64318852000331799999999999999987378089997379884-68988899999999999888871889787999
Q gi|254780413|r  649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII  727 (820)
Q Consensus       649 rieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp-~v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v  727 (820)
T Consensus       353 kiEag~l~le~~~f~l~~~~~~v~~~~~~~a~~k~l~l~~~~~~~~p~~v~gD~~Rl~QIl~NLl~NAiKfT~~G~-I~v  431 (920)
T PRK11107        353 KLEAGKLILENIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGN-IDI  431 (920)
T ss_pred             HHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCCC-EEE
T ss_conf             9845983674016789999999999999999973987999978999730653899999999999999997188993-799


Q ss_pred             EEEEC--CCC--EEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEE
Q ss_conf             99980--499--49999997889789888664237718734787666788860689999999961986999978899539
Q gi|254780413|r  728 STTHT--SNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL  803 (820)
Q Consensus       728 ~~~~~--~~~--~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~  803 (820)
T Consensus       432 ~v~~~~~~~~~~~l~~~V~DTGiGI~~~~~~~iF~~F~q~d~s~~r~~gGtGLGLaI~k~Lv~~mgG~I~v~S~~g~GS~  511 (920)
T PRK11107        432 LVELRALSDEKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGST  511 (920)
T ss_pred             EEEEEECCCCEEEEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCEE
T ss_conf             99999647984899999999705869999997854201567654456798774299999999980991799954899748


Q ss_pred             EEEEECCCCCC
Q ss_conf             99996357778
Q gi|254780413|r  804 IEIIFPLYDTS  814 (820)
Q Consensus       804 f~v~lP~~~~~  814 (820)
T Consensus       512 F~Ftlpl~~~~  522 (920)
T PRK11107        512 FWFHLPLDLNP  522 (920)
T ss_pred             EEEEEECCCCC
T ss_conf             99999804766