HHsearch alignment for GI: 254780413 and conserved domain: PRK11360
>PRK11360 sensory histidine kinase AtoS; Provisional.
Probab=100.00 E-value=0 Score=541.64 Aligned_cols=346 Identities=26% Similarity=0.430 Sum_probs=294.6
Q ss_pred HHHHHHHHHHHHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCE
Q ss_conf 99999999999999742204307859983872156899884896032078644334564562778999998860698402
Q gi|254780413|r 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 (820)
Q Consensus 445 ~~L~~~~~~L~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (820)
T Consensus 254 ~~L~~~~~~~e~IL~sm~dGVIaiD~~G~I~~~N~~A~~llg~~~~e~ig~~~~~l~~~~~~---~~~~~~~l~~~~~~- 329 (607)
T PRK11360 254 QALREARTLNELIIENAADGIIAIDRQGDITTMNPAAEVITGYQRHELVGQPYSMLFDNTQF---YSPVLDTLEHGTEH- 329 (607)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHCCCHHH---HHHHHHHHHCCCCC-
T ss_conf 99999999899998610466999979994999838999985879789859679995795767---79999998537742-
Q ss_pred EEEEEEEECCCCCEEEEEEEEEECCCC----CEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 234888763897289999998871788----7399998651444434576544668878999999999985234531748
Q gi|254780413|r 525 LEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 (820)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~Dite~k~~e~el~~~~~~~e~~~~~k~~fla~vsHElrtPL 600 (820)
T Consensus 330 ~~~~~~~~~~~~-~~~l~~~~s~~~~~~g~~~G~v~~~~DiTe~~~le~~l~~~erl-----aalGe~~A~vaHElRnPL 403 (607)
T PRK11360 330 VALEISFPGRDR-TIELSVTTSRLHDTHGEMIGAVVIFSDLTARKRLQRRMARAERL-----AALGELMAGVAHEIRNPL 403 (607)
T ss_pred CCEEEEECCCCC-EEEEEEEEEEEECCCCCEEEEEEEEEECCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_conf 124899605883-49999998535768985889999999577899999999999999-----999999999899871549
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHH
Q ss_conf 99999999997312687788899999999999899999999999998664318852000331799999999999999987
Q gi|254780413|r 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 (820)
Q Consensus 601 ~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~lv~~~~~~~~~~a~ 680 (820)
T Consensus 404 t~I~g~~elL~~~~----~~~~~~~~l~~i~~e~~Rl~~li~~lL~~sr~~~~----~~~~v~l~~l~~~~~~~~~~~~~ 475 (607)
T PRK11360 404 TAIRGYVQILRQQT----SDPIHQEYLSVVLREVDSLNKVIQQLLEFSRPRHS----QWQQVSLNALVEEVLVLVQTAGV 475 (607)
T ss_pred HHHHHHHHHHHCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCCEECHHHHHHHHHHHHHHHHH
T ss_conf 99999999986689----98799999999999999999999999985277888----88478699999999999999888
Q ss_pred HCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCC
Q ss_conf 37808999737988468988899999999999888871889787999999804994999999788978988866423771
Q gi|254780413|r 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 (820)
Q Consensus 681 ~~~i~l~~~~~~~lp~v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF 760 (820)
T Consensus 476 ~~~i~l~~~~~~~~~~v~~D~~~l~qvl~NLi~NAi~a~~~~g~I~i~~~~~~~~~v~i~V~D~G~GI~~e~~~~IFepF 555 (607)
T PRK11360 476 QARVDFITELDNELPPINADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGCGIDLELLKKIFDPF 555 (607)
T ss_pred HCCCEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCC
T ss_conf 67968999818988769988899999999999996286289967999999936987999999867686989996455897
Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCCC
Q ss_conf 873478766678886068999999996198699997889953999996357778
Q gi|254780413|r 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 (820)
Q Consensus 761 ~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~~~~ 814 (820)
T Consensus 556 ~ttk------~~GtGLGLaI~k~Ive~hgG~I~v~S~~g~GT~F~i~LPl~~~~ 603 (607)
T PRK11360 556 FTTK------ASGTGLGLALSQRIINAHQGDIRVASLPGYGTTFTLILPINPQG 603 (607)
T ss_pred CCCC------CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECCCCC
T ss_conf 5489------99813379999999998899899996699986999998068988