HHsearch alignment for GI: 254780413 and conserved domain: PRK11360
>PRK11360 sensory histidine kinase AtoS; Provisional.
Probab=98.79 E-value=4.5e-07 Score=69.78 Aligned_cols=128 Identities=16% Similarity=0.201 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHCCCCEE-EEECCEEEEECHHHHHHHCCCCHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCE-E
Q ss_conf 556578999963499789-97099588720688988379844772246761122024554513567899987505866-5
Q gi|254780413|r 317 EGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC-I 394 (820)
Q Consensus 317 ~~~~~~~~ild~lp~gv~-i~~~gri~~~N~a~~~l~G~~~~e~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~-~ 394 (820)
T Consensus 258 ~~~~~~e~IL~sm~dGVIaiD~~G~I~~~N~~A~~llg~~~~e~ig~~--~~~l~~~~~~-----~~~~~~~l~~~~~~~ 330 (607)
T PRK11360 258 EARTLNELIIENAADGIIAIDRQGDITTMNPAAEVITGYQRHELVGQP--YSMLFDNTQF-----YSPVLDTLEHGTEHV 330 (607)
T ss_pred HHHHHHHHHHHHHCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCC--HHHHCCCHHH-----HHHHHHHHHCCCCCC
T ss_conf 999989999861046699997999499983899998587978985967--9995795767-----799999985377421
Q ss_pred EEEEEEEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 59999999973894499999963243332002333445678888999999999999999999
Q gi|254780413|r 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 (820)
Q Consensus 395 ~~~~~~~~i~~~g~~~~~l~~~~~~~~d~~~~~~~~~~~~~dit~~~~~~~~L~~~~~~L~~ 456 (820)
T Consensus 331 ~~~~~~--~~~~~--~~~l~~~~s~~~~~~g~~~G~v~~~~DiTe~~~le~~l~~~e-rlaa 387 (607)
T PRK11360 331 ALEISF--PGRDR--TIELSVTTSRLHDTHGEMIGAVVIFSDLTARKRLQRRMARAE-RLAA 387 (607)
T ss_pred CEEEEE--CCCCC--EEEEEEEEEEEECCCCCEEEEEEEEEECCHHHHHHHHHHHHH-HHHH
T ss_conf 248996--05883--499999985357689858899999995778999999999999-9999