HHsearch alignment for GI: 254780413 and conserved domain: PRK11644
>PRK11644 sensory histidine kinase UhpB; Provisional.
Probab=99.60 E-value=5.3e-12 Score=105.86 Aligned_cols=186 Identities=20% Similarity=0.283 Sum_probs=129.8
Q ss_pred HHHHH----HCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHH
Q ss_conf 52345----31748999999999973126877888999999999998999999999999986643188520003317999
Q gi|254780413|r 591 RVSHE----IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 (820)
Q Consensus 591 ~vsHE----lrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srieaG~~~l~~~~vdl~~ 666 (820)
T Consensus 306 ~IARELHDEiGQ~LTAIr~~a~~i~r~--~-~~~~~~~~~a~~I~~l~~~i~~~vR~ll~~LRP------~~LDdLGL~~ 376 (497)
T PRK11644 306 DVARELHDEIGQTITAIRTQASIVKRL--A-ADNASVKQSGQLIEQLSLGVYDAVRRLLGRLRP------RQLDDLTLEQ 376 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC--C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CCHHHCCHHH
T ss_conf 999970003405999999999998632--6-997668999999999999999999999986090------3111248999
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCCCEEE-ECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEECC
Q ss_conf 99999999999987378089997379884689-88899999999999888871889787999999804994999999788
Q gi|254780413|r 667 AVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 (820)
Q Consensus 667 lv~~~~~~~~~~a~~~~i~l~~~~~~~lp~v~-~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v~i~V~DtG 745 (820)
T Consensus 377 AL~~Lv~e~~~~--~~gi~~~l~~~~~~~~L~~~~~itlYRIvQEaLTNi~KHA~A~-~V~I~L~~~~-~~l~L~I~DDG 452 (497)
T PRK11644 377 AIRSLMRELELE--DRGIVSHLDWQIDESALSETQRVTLFRVCQEGLNNIVKHADAS-AVTIQGWQQD-ERLMLVIEDNG 452 (497)
T ss_pred HHHHHHHHHHHH--CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEEECC-CEEEEEEEECC
T ss_conf 999999987652--5795599982687667982468899999999999999737887-6999999769-98999998899
Q ss_pred CCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECC
Q ss_conf 97898886642377187347876667888606899999999619869999788995399999635
Q gi|254780413|r 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 (820)
Q Consensus 746 ~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~ 810 (820)
T Consensus 453 ~Gf~~~~-------------------~~~G~GL~GMrERV~aLGG~l~I~S~~--GT~I~V~LP~ 496 (497)
T PRK11644 453 SGLPPGS-------------------GQQGFGLRGMQERVSALGGTLTISCTH--GTRLSVTLPQ 496 (497)
T ss_pred CCCCCCC-------------------CCCCCCCHHHHHHHHHCCCEEEEEECC--CCEEEEECCC
T ss_conf 8989898-------------------999989267999999749979998289--9779995899