HHsearch alignment for GI: 254780413 and conserved domain: PRK13558

>PRK13558 bacterio-opsin activator; Provisional.
Probab=98.99  E-value=5e-09  Score=84.07  Aligned_cols=143  Identities=13%  Similarity=0.143  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEE----CCEEEEECHHHHHHHCCCCHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             5556578999963499789970----995887206889883798447722467611220245545135678999875058
Q gi|254780413|r  316 DEGENLTPETVDKCPIPFFVYS----HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR  391 (820)
Q Consensus       316 ~~~~~~~~~ild~lp~gv~i~~----~gri~~~N~a~~~l~G~~~~e~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g  391 (820)
T Consensus       154 ~~e~~~~~ra~d~a~v~i~~a~~~~p~~~i~~~n~a~~eitGy~~~e~~g~~~r~---lq~~~~-~~e~~~~~~~ai~~~  229 (674)
T PRK13558        154 ESERRLKEQALDEAPIGITISDATDPEEPIIYINDSFEDITGYSPDEVVGANHRF---LQGPKT-NEDRVAEFWTAITED  229 (674)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEHHHHHHCCCCHHHHCCCCHHH---HCCCCC-CHHHHHHHHHHHHCC
T ss_conf             9999988756640572599846888887438860123653189817864974012---106888-805799999997558


Q ss_pred             CEEEEEEEEEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             66559999999973894499999963243332002333445678888999999999999999999997422043
Q gi|254780413|r  392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI  465 (820)
Q Consensus       392 ~~~~~~~~~~~i~~~g~~~~~l~~~~~~~~d~~~~~~~~~~~~~dit~~~~~~~~L~~~~~~L~~ile~~~~gI  465 (820)
T Consensus       230 ~~~~ve--~r~~r~dG~-~~w~~~~i~pi~Dedg~v~~~Vg~~~DiteRke~E~~L~~~~~~l~~~L~RiN~LI  300 (674)
T PRK13558        230 HDTQVV--LRNYRRDGS-LFWNQVDISPIYDEDGTVSHYVGFQMDVSERMAAQQELQGERQSLDRLLDRVNGLM  300 (674)
T ss_pred             CCCEEE--EEEECCCCC-EEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             863345--333146883-78741245521057885899986214477889999999986889999999999999