HHsearch alignment for GI: 254780413 and conserved domain: PRK13558
>PRK13558 bacterio-opsin activator; Provisional.
Probab=98.99 E-value=5e-09 Score=84.07 Aligned_cols=143 Identities=13% Similarity=0.143 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEEE----CCEEEEECHHHHHHHCCCCHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 5556578999963499789970----995887206889883798447722467611220245545135678999875058
Q gi|254780413|r 316 DEGENLTPETVDKCPIPFFVYS----HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391 (820)
Q Consensus 316 ~~~~~~~~~ild~lp~gv~i~~----~gri~~~N~a~~~l~G~~~~e~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g 391 (820)
T Consensus 154 ~~e~~~~~ra~d~a~v~i~~a~~~~p~~~i~~~n~a~~eitGy~~~e~~g~~~r~---lq~~~~-~~e~~~~~~~ai~~~ 229 (674)
T PRK13558 154 ESERRLKEQALDEAPIGITISDATDPEEPIIYINDSFEDITGYSPDEVVGANHRF---LQGPKT-NEDRVAEFWTAITED 229 (674)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEHHHHHHCCCCHHHHCCCCHHH---HCCCCC-CHHHHHHHHHHHHCC
T ss_conf 9999988756640572599846888887438860123653189817864974012---106888-805799999997558
Q ss_pred CEEEEEEEEEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 66559999999973894499999963243332002333445678888999999999999999999997422043
Q gi|254780413|r 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 (820)
Q Consensus 392 ~~~~~~~~~~~i~~~g~~~~~l~~~~~~~~d~~~~~~~~~~~~~dit~~~~~~~~L~~~~~~L~~ile~~~~gI 465 (820)
T Consensus 230 ~~~~ve--~r~~r~dG~-~~w~~~~i~pi~Dedg~v~~~Vg~~~DiteRke~E~~L~~~~~~l~~~L~RiN~LI 300 (674)
T PRK13558 230 HDTQVV--LRNYRRDGS-LFWNQVDISPIYDEDGTVSHYVGFQMDVSERMAAQQELQGERQSLDRLLDRVNGLM 300 (674)
T ss_pred CCCEEE--EEEECCCCC-EEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 863345--333146883-78741245521057885899986214477889999999986889999999999999