HHsearch alignment for GI: 254780413 and conserved domain: TIGR02040

>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR; InterPro: IPR011785 This entry represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor . These proteins contain a Helix-Turn-Helix motif of the "fis" type..

Probab=98.07  E-value=0.00015  Score=51.34  Aligned_cols=113  Identities=19%  Similarity=0.249  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHEEECC-CCEEEEEHHHHHHHHCCCHH---HCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             99999999999999999742204307859-98387215689988489603---207864433456456277899999886
Q gi|254780413|r  442 INKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVE---DILRKPFTVFLEQNTPSVMNHYLTEIL  517 (820)
Q Consensus       442 ~~~~~L~~~~~~L~~ile~~~~gI~~~D~-~G~i~~~N~a~~~l~G~~~~---el~g~~~~~~~~~~~~~~~~~~~~~~~  517 (820)
T Consensus       128 rDYW~lR~~EtRYR~ll~~s~davllv~~st~rileaN~~A~~lLg~~~~~rd~LvG~~~~~e~~~~~~~~l~~~l~~~~  207 (453)
T TIGR02040       128 RDYWKLREMETRYRLLLEVSSDAVLLVDVSTGRILEANSAAAALLGAEGQRRDSLVGREFPQELEEREREELELLLREVR  207 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHCCHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             87999866754443354114886799853653477867999998502677501231113431466454368999998643


Q ss_pred             CCCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCEEEEE
Q ss_conf             0698402234888763897289999998871788739999
Q gi|254780413|r  518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT  557 (820)
Q Consensus       518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  557 (820)
T Consensus       208 atg~A~~~--~i~l~~~~~~~~-v~~s~~r~~~~~~fL~~  244 (453)
T TIGR02040       208 ATGKAAEV--RILLAESRKELL-VVVSLFRQDSESLFLVR  244 (453)
T ss_pred             HCCCCCCC--EEEECCCCCCEE-EEEEEEECCCCCHHHEE
T ss_conf             01577871--787457887317-88776402366410113