HHsearch alignment for GI: 254780413 and conserved domain: TIGR02373
>TIGR02373 photo_yellow photoactive yellow protein; InterPro: IPR012130 Members of this family are photoactive yellow protein, a cytosolic, 14-kDa light-sensing protein which has a 4-hydroxycinnamyl (p-coumaric acid) chromophore covalently linked to a Cys residue. The enzyme 4-coumarate--CoA ligase as described by IPR012743 from INTERPRO is required for its biosynthesis. The modified Cys is in a PAS domain, frequently found in signal transducing proteins. Members are known in alpha and gamma Proteobacteria that include Rhodobacter capsulatus, Halorhodospira halophila, Rhodospirillum centenum, etc.; GO: 0009881 photoreceptor activity, 0007602 phototransduction, 0018298 protein-chromophore linkage.
Probab=90.84 E-value=0.087 Score=31.07 Aligned_cols=88 Identities=10% Similarity=0.049 Sum_probs=63.3
Q ss_pred CCCCEEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCC-HHHHHCCCCCCC-HHHHHHHHHCCCCCCCEEEEECCCCCC
Q ss_conf 789810599997999099966789966289978974996-888204016882-389999986379616716886147988
Q gi|254780413|r 79 IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTN 156 (820)
Q Consensus 79 ~~~~~rfvw~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~-~~e~~~~~~~~p-~~~i~~~l~~~~~~~~~~~~~~~~g~~ 156 (820)
T Consensus 25 d~LpfG-AiqlD~~G~I~~YN~aEg~l~GR~P~~VIGrnFF~evAPCt~~~~F~G~F~~gv~~G~ln~mfdy~Fdyqm~p 103 (126)
T TIGR02373 25 DSLPFG-AIQLDGSGRILKYNAAEGELTGRDPERVIGRNFFKEVAPCTDIPEFSGRFLEGVASGQLNAMFDYVFDYQMAP 103 (126)
T ss_pred CCCCCC-EEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEEEEEECCCCCE
T ss_conf 255410-4886698830211011000138797732274342332788888443232401102465213676665575860
Q ss_pred CEEEEEEEEEE
Q ss_conf 37999986300
Q gi|254780413|r 157 LYVPIDLAALP 167 (820)
Q Consensus 157 ~~~~v~ls~~P 167 (820)
T Consensus 104 v~Vkihmk~a~ 114 (126)
T TIGR02373 104 VKVKIHMKKAL 114 (126)
T ss_pred EEEEEEEECCC
T ss_conf 58999852288