HHsearch alignment for GI: 254780413 and conserved domain: TIGR02938
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL; InterPro: IPR014285 NifL modulates the activity of the nitrogen fixation positive regulator protein NifA, acting as a negative regulator by binding NifA. NifA and NifL are encoded by adjacent genes..
Probab=99.04 E-value=2.7e-10 Score=93.38 Aligned_cols=299 Identities=14% Similarity=0.077 Sum_probs=183.8
Q ss_pred CCCCCCEEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCC---HHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 57789810599997999099966789966289978974996888204016882---389999986379616716886147
Q gi|254780413|r 77 DPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP---NNHIGDLLKRQNTWYGKTTLWPIE 153 (820)
Q Consensus 77 ~~~~~~~rfvw~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p---~~~i~~~l~~~~~~~~~~~~~~~~ 153 (820)
T Consensus 9 tVdqAp~A-ISITDlKANILyaN~AF~~iTGY~~eE~iGkNES~LSn~t--TPpeVYQaLWg~la~qkPW~G~LlNRrkD 85 (496)
T TIGR02938 9 TVDQAPVA-ISITDLKANILYANDAFSEITGYAKEEVIGKNESVLSNRT--TPPEVYQALWGSLAEQKPWAGKLLNRRKD 85 (496)
T ss_pred HHHHCCCE-EEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHCCCCCCCEECCCCC
T ss_conf 66228803-6431014569999566321558656211125540126858--87179999998863058986510000116
Q ss_pred CCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98837999986300156887363055668985221037799999863243344543014320023344210144455310
Q gi|254780413|r 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233 (820)
Q Consensus 154 g~~~~~~v~ls~~Pv~d~~g~~~G~rG~gv~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (820)
T Consensus 86 g~lYL--AeLtvaPvlneaGeT~hfl--GMHRd~tElh~Leq~V------------------------------------ 125 (496)
T TIGR02938 86 GELYL--AELTVAPVLNEAGETTHFL--GMHRDVTELHRLEQRV------------------------------------ 125 (496)
T ss_pred CCHHH--HHHCCCCHHCCCCCCEEEE--CCCCCHHHHHHHHHHH------------------------------------
T ss_conf 53002--2202020001468815873--2545435788998889------------------------------------
Q ss_pred CCCHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHH
Q ss_conf 01100013344101361012222000210152011100000002440233355542101101222332100011013456
Q gi|254780413|r 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 (820)
Q Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (820)
T Consensus 126 -------------------------------------------------------------------------------- 125 (496)
T TIGR02938 126 -------------------------------------------------------------------------------- 125 (496)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHCCCCEE-EEECCEEEEECHHHHHHHCCCCHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 545556578999963499789-9709958872068898837984477224676112202455451356789998750586
Q gi|254780413|r 314 YFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392 (820)
Q Consensus 314 ~~~~~~~~~~~ild~lp~gv~-i~~~gri~~~N~a~~~l~G~~~~e~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~ 392 (820)
T Consensus 126 --~nQ~l~iE~VV~aaPva~vllD~~gRv~LdN~~yk~La~-----DL~v~epa~~-~l~l-Lre~~~e~~~~~~~q~-- 194 (496)
T TIGR02938 126 --ANQKLLIEAVVDAAPVAAVLLDEQGRVVLDNLEYKKLAS-----DLKVEEPAEL-LLKL-LREELAEDLEELENQE-- 194 (496)
T ss_pred --HHHHHHHHHHHHHHHHHHHEECCCCCEEECCHHHHHHHH-----HCCCCCCHHH-HHHH-HHHHHHHHHHHHCCCC--
T ss_conf --764678999987865410005699868816776887874-----2141441799-9998-5087652786520211--
Q ss_pred EEEEEEEEEEEEECCCE-EEEEEEEECCCCCCCHHH---------HHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Q ss_conf 65599999999738944-999999632433320023---------33445678888999999--------9999999999
Q gi|254780413|r 393 CIAASARLHTIQWNREN-SLAMTFIPFEKANQFPEN---------MPQNGIEPEDVDTRINK--------RKMEIEVMQL 454 (820)
Q Consensus 393 ~~~~~~~~~~i~~~g~~-~~~l~~~~~~~~d~~~~~---------~~~~~~~~dit~~~~~~--------~~L~~~~~~L 454 (820)
T Consensus 195 -~afsn~E~rfD~ggGR~~RWlSc~g~~i~~e~~~ad~fF~~~e~~yLLLti~Dis~lr~~Qe~~Rl~aLqAlmAEEE~l 273 (496)
T TIGR02938 195 -KAFSNKELRFDRGGGRSARWLSCAGRVIRIEEDSADSFFAAAEKRYLLLTIDDISELRKKQERARLSALQALMAEEEKL 273 (496)
T ss_pred -CEECCCEEEEECCCCCCCCCEEECCCEEEEECCCCCEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -0101540354168878850102023235311364011561689983056636478889999999999989999899888
Q ss_pred HHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCE
Q ss_conf 9999742204307859983872156899884896032078644334564562778999998860698402
Q gi|254780413|r 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 (820)
Q Consensus 455 ~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (820)
T Consensus 274 e~~rEtl~AAIhrl~gP~Nl---isaA~~~L~RR--------lG---D~AGn~a~~~~lqqa~~ag~e~~ 329 (496)
T TIGR02938 274 EALRETLSAAIHRLQGPLNL---ISAAISVLERR--------LG---DDAGNDAVAALLQQALAAGREAL 329 (496)
T ss_pred HHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHC--------CC---CCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 88766688888885287107---88999986320--------58---32379799999999988639999