HHsearch alignment for GI: 254780413 and conserved domain: TIGR02938

>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL; InterPro: IPR014285 NifL modulates the activity of the nitrogen fixation positive regulator protein NifA, acting as a negative regulator by binding NifA. NifA and NifL are encoded by adjacent genes..
Probab=99.04  E-value=2.7e-10  Score=93.38  Aligned_cols=299  Identities=14%  Similarity=0.077  Sum_probs=183.8

Q ss_pred             CCCCCCEEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCC---HHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf             57789810599997999099966789966289978974996888204016882---389999986379616716886147
Q gi|254780413|r   77 DPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP---NNHIGDLLKRQNTWYGKTTLWPIE  153 (820)
Q Consensus        77 ~~~~~~~rfvw~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p---~~~i~~~l~~~~~~~~~~~~~~~~  153 (820)
T Consensus         9 tVdqAp~A-ISITDlKANILyaN~AF~~iTGY~~eE~iGkNES~LSn~t--TPpeVYQaLWg~la~qkPW~G~LlNRrkD   85 (496)
T TIGR02938         9 TVDQAPVA-ISITDLKANILYANDAFSEITGYAKEEVIGKNESVLSNRT--TPPEVYQALWGSLAEQKPWAGKLLNRRKD   85 (496)
T ss_pred             HHHHCCCE-EEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHCCCCCCCEECCCCC
T ss_conf             66228803-6431014569999566321558656211125540126858--87179999998863058986510000116


Q ss_pred             CCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             98837999986300156887363055668985221037799999863243344543014320023344210144455310
Q gi|254780413|r  154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH  233 (820)
Q Consensus       154 g~~~~~~v~ls~~Pv~d~~g~~~G~rG~gv~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (820)
T Consensus        86 g~lYL--AeLtvaPvlneaGeT~hfl--GMHRd~tElh~Leq~V------------------------------------  125 (496)
T TIGR02938        86 GELYL--AELTVAPVLNEAGETTHFL--GMHRDVTELHRLEQRV------------------------------------  125 (496)
T ss_pred             CCHHH--HHHCCCCHHCCCCCCEEEE--CCCCCHHHHHHHHHHH------------------------------------
T ss_conf             53002--2202020001468815873--2545435788998889------------------------------------


Q ss_pred             CCCHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHH
Q ss_conf             01100013344101361012222000210152011100000002440233355542101101222332100011013456
Q gi|254780413|r  234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA  313 (820)
Q Consensus       234 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (820)
                                                                                                      
T Consensus       126 --------------------------------------------------------------------------------  125 (496)
T TIGR02938       126 --------------------------------------------------------------------------------  125 (496)
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHCCCCEE-EEECCEEEEECHHHHHHHCCCCHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             545556578999963499789-9709958872068898837984477224676112202455451356789998750586
Q gi|254780413|r  314 YFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT  392 (820)
Q Consensus       314 ~~~~~~~~~~~ild~lp~gv~-i~~~gri~~~N~a~~~l~G~~~~e~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~  392 (820)
T Consensus       126 --~nQ~l~iE~VV~aaPva~vllD~~gRv~LdN~~yk~La~-----DL~v~epa~~-~l~l-Lre~~~e~~~~~~~q~--  194 (496)
T TIGR02938       126 --ANQKLLIEAVVDAAPVAAVLLDEQGRVVLDNLEYKKLAS-----DLKVEEPAEL-LLKL-LREELAEDLEELENQE--  194 (496)
T ss_pred             --HHHHHHHHHHHHHHHHHHHEECCCCCEEECCHHHHHHHH-----HCCCCCCHHH-HHHH-HHHHHHHHHHHHCCCC--
T ss_conf             --764678999987865410005699868816776887874-----2141441799-9998-5087652786520211--


Q ss_pred             EEEEEEEEEEEEECCCE-EEEEEEEECCCCCCCHHH---------HHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Q ss_conf             65599999999738944-999999632433320023---------33445678888999999--------9999999999
Q gi|254780413|r  393 CIAASARLHTIQWNREN-SLAMTFIPFEKANQFPEN---------MPQNGIEPEDVDTRINK--------RKMEIEVMQL  454 (820)
Q Consensus       393 ~~~~~~~~~~i~~~g~~-~~~l~~~~~~~~d~~~~~---------~~~~~~~~dit~~~~~~--------~~L~~~~~~L  454 (820)
T Consensus       195 -~afsn~E~rfD~ggGR~~RWlSc~g~~i~~e~~~ad~fF~~~e~~yLLLti~Dis~lr~~Qe~~Rl~aLqAlmAEEE~l  273 (496)
T TIGR02938       195 -KAFSNKELRFDRGGGRSARWLSCAGRVIRIEEDSADSFFAAAEKRYLLLTIDDISELRKKQERARLSALQALMAEEEKL  273 (496)
T ss_pred             -CEECCCEEEEECCCCCCCCCEEECCCEEEEECCCCCEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             -0101540354168878850102023235311364011561689983056636478889999999999989999899888


Q ss_pred             HHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCE
Q ss_conf             9999742204307859983872156899884896032078644334564562778999998860698402
Q gi|254780413|r  455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT  524 (820)
Q Consensus       455 ~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (820)
T Consensus       274 e~~rEtl~AAIhrl~gP~Nl---isaA~~~L~RR--------lG---D~AGn~a~~~~lqqa~~ag~e~~  329 (496)
T TIGR02938       274 EALRETLSAAIHRLQGPLNL---ISAAISVLERR--------LG---DDAGNDAVAALLQQALAAGREAL  329 (496)
T ss_pred             HHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHC--------CC---CCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             88766688888885287107---88999986320--------58---32379799999999988639999