HHsearch alignment for GI: 254780413 and conserved domain: TIGR02956
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=100.00 E-value=0 Score=539.66 Aligned_cols=237 Identities=33% Similarity=0.563 Sum_probs=221.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44668878999999999985234531748999999999973126877888999999999998999999999999986643
Q gi|254780413|r 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 (820)
Q Consensus 572 ~~~~~~~e~~~~~k~~fla~vsHElrtPL~~I~g~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~dlLd~srie 651 (820)
T Consensus 492 ~kAR~~AE~AnrAKS~FLAtMSHEIRTPlNG~LGT~~LL~d~~L----~~~Q~~yl~~In~SGe~LL~iLNDILDYSkIE 567 (1052)
T TIGR02956 492 AKARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGL----TSQQQQYLQVINRSGESLLDILNDILDYSKIE 567 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999974887688741351132011368999975058998----88899999999862278999984675467761
Q ss_pred CC--CCCCCEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC-EEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 18--852000331799999999999999987378089997379884-689888999999999998888718897879999
Q gi|254780413|r 652 SG--KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 (820)
Q Consensus 652 aG--~~~l~~~~vdl~~lv~~~~~~~~~~a~~~~i~l~~~~~~~lp-~v~~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~ 728 (820)
T Consensus 568 aGGthl~i~~~~fd~~~L~~dv~~Lm~sRA~~Kg~~L~~~~~~~~~~~~~gD~~riRQvL~NLvgNaIKFT~~G-sv~l~ 646 (1052)
T TIGR02956 568 AGGTHLSISPRPFDLNKLLEDVHHLMESRAQEKGIQLILNIDEQLPNWWQGDLRRIRQVLINLVGNAIKFTDRG-SVVLR 646 (1052)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHHHHCCCEECCCC-EEEEE
T ss_conf 08746534556778888999999999987740372567427654278875366134476765441320043452-69999
Q ss_pred EEECCCC-----EEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCE---EEEEEECCC
Q ss_conf 9980499-----49999997889789888664237718734787666788860689999999961986---999978899
Q gi|254780413|r 729 TTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK---FYIFSTPAK 800 (820)
Q Consensus 729 ~~~~~~~-----~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGLai~k~iVe~hgG~---i~v~S~pG~ 800 (820)
T Consensus 647 ~~l~~~~~~gdsel~F~V~DtG~GIae~~~~~lF~aF~Qa~eg-~~~~gGTGLGLAIs~~Lv~AM~G~GrGl~v~S~~~~ 725 (1052)
T TIGR02956 647 VSLNDDSSSGDSELLFEVEDTGVGIAEEEQATLFDAFTQADEG-RRKSGGTGLGLAISRRLVEAMDGEGRGLGVESELGQ 725 (1052)
T ss_pred EEECCCCCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 8855888986634788886247799879998543310121013-731377650689999999970888765016664587
Q ss_pred CEEEEEEECCCCCC
Q ss_conf 53999996357778
Q gi|254780413|r 801 GTLIEIIFPLYDTS 814 (820)
Q Consensus 801 Gt~f~v~lP~~~~~ 814 (820)
T Consensus 726 GScF~F~lpl~~~~ 739 (1052)
T TIGR02956 726 GSCFWFTLPLARGK 739 (1052)
T ss_pred CCEEEEECCCCCCC
T ss_conf 50221242313375