HHsearch alignment for GI: 254780413 and conserved domain: pfam00989

>pfam00989 PAS PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.

Probab=99.25  E-value=4.4e-11  Score=99.10  Aligned_cols=98  Identities=16%  Similarity=0.213  Sum_probs=76.4

Q ss_pred             EEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCH-HHHHHHHHCCCCCC-CEEEEECCCCCCCEEEEE
Q ss_conf             5999979990999667899662899789749968882040168823-89999986379616-716886147988379999
Q gi|254780413|r   85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWY-GKTTLWPIEGTNLYVPID  162 (820)
Q Consensus        85 fvw~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p~-~~i~~~l~~~~~~~-~~~~~~~~~g~~~~~~v~  162 (820)
T Consensus        13 ~i~~~D~~g~i~~~N~a~~~l~G~~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~--~~~~   90 (112)
T pfam00989        13 GIFVVDEDGRILYVNAAAEELLGLSREEVIGKSLLDLIPEEDDAEVAELLRQALLQGEESRGGEVSFRVPDGRP--RHVE   90 (112)
T ss_pred             HEEEECCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCE--EEEE
T ss_conf             61999899999999165332258636674375201245753439999999999981997688776528799989--9999


Q ss_pred             EEEEEEECCCCCEEEEEEEEEEEEC
Q ss_conf             8630015688736305566898522
Q gi|254780413|r  163 LAALPIYSRNREFSGFRGFGIVHVN  187 (820)
Q Consensus       163 ls~~Pv~d~~g~~~G~rG~gv~r~~  187 (820)
T Consensus        91 ~~~~pi~d~~g~~-g~v--~i~rDI  112 (112)
T pfam00989        91 VRASPVRDAGGEI-GFL--GVLRDI  112 (112)
T ss_pred             EEEEEEECCCCCE-EEE--EEEECC
T ss_conf             9999999199999-999--999849