HHsearch alignment for GI: 254780413 and conserved domain: pfam08446
>pfam08446 PAS_2 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=95.28 E-value=0.18 Score=28.66 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=46.2
Q ss_pred CCEEEEEEEC-CCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCHHHHHHHHHCCC
Q ss_conf 9810599997-999099966789966289978974996888204016882389999986379
Q gi|254780413|r 81 RTVRFTWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141 (820)
Q Consensus 81 ~~~rfvw~~D-~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p~~~i~~~l~~~~ 141 (820)
T Consensus 13 QPhG~LLal~~~~~~I~qaS~N~~~~lG~~~~~llG~~l~~ll~~---~~~~~l~~~l~~~~ 71 (107)
T pfam08446 13 QPHGCLLAVEEPDFRVLQASENAAEMLGLVAQQLLGTDLRTLLTP---SSAAALRKALAAGD 71 (107)
T ss_pred CCCEEEEEEECCCCEEEEECCCHHHHHCCCHHHHCCCCHHHHCCH---HHHHHHHHHHHCCC
T ss_conf 788799999779987999855888885859589859968998698---89999999861578