HHsearch alignment for GI: 254780413 and conserved domain: pfam08448
>pfam08448 PAS_4 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=99.31 E-value=1.8e-11 Score=101.92 Aligned_cols=102 Identities=12% Similarity=0.092 Sum_probs=77.5
Q ss_pred EEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCH-HHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEEE
Q ss_conf 999979990999667899662899789749968882040168823-8999998637961671688614798837999986
Q gi|254780413|r 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164 (820)
Q Consensus 86 vw~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p~-~~i~~~l~~~~~~~~~~~~~~~~g~~~~~~v~ls 164 (820)
T Consensus 8 i~~~D~~g~i~~~N~a~~~~~g~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~--~~~~~~ 84 (110)
T pfam08448 8 LAVLDPDGRVRYANAAAAELFGLPPEELLGKTLAELLPPEDAARLERALRRALEGEEPID-FLEELLLNGEE--RHYELR 84 (110)
T ss_pred HEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCCHHCCCCHHHHHHHHHHHHHHCCCCEEE-EEEEECCCCCC--EEEEEE
T ss_conf 379949996999934746670989899809512100680345667778999973895588-66430258852--000435
Q ss_pred EEEEECCCCCEEEEEEEEEEEECCCHHH
Q ss_conf 3001568873630556689852210377
Q gi|254780413|r 165 ALPIYSRNREFSGFRGFGIVHVNRVDND 192 (820)
Q Consensus 165 ~~Pv~d~~g~~~G~rG~gv~r~~~~~~~ 192 (820)
T Consensus 85 ~~pi~d~~G~~~g~--v~~~~DITerKq 110 (110)
T pfam08448 85 LTPLRDPDGEVIGV--LVISRDITERRR 110 (110)
T ss_pred EEEEECCCCCEEEE--EEEEEECCHHCC
T ss_conf 76689899999999--999998833129