HHsearch alignment for GI: 254780413 and conserved domain: pfam08448

>pfam08448 PAS_4 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=99.31  E-value=1.8e-11  Score=101.92  Aligned_cols=102  Identities=12%  Similarity=0.092  Sum_probs=77.5

Q ss_pred             EEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCH-HHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEEE
Q ss_conf             999979990999667899662899789749968882040168823-8999998637961671688614798837999986
Q gi|254780413|r   86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA  164 (820)
Q Consensus        86 vw~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~~p~-~~i~~~l~~~~~~~~~~~~~~~~g~~~~~~v~ls  164 (820)
T Consensus         8 i~~~D~~g~i~~~N~a~~~~~g~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~--~~~~~~   84 (110)
T pfam08448         8 LAVLDPDGRVRYANAAAAELFGLPPEELLGKTLAELLPPEDAARLERALRRALEGEEPID-FLEELLLNGEE--RHYELR   84 (110)
T ss_pred             HEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCCHHCCCCHHHHHHHHHHHHHHCCCCEEE-EEEEECCCCCC--EEEEEE
T ss_conf             379949996999934746670989899809512100680345667778999973895588-66430258852--000435


Q ss_pred             EEEEECCCCCEEEEEEEEEEEECCCHHH
Q ss_conf             3001568873630556689852210377
Q gi|254780413|r  165 ALPIYSRNREFSGFRGFGIVHVNRVDND  192 (820)
Q Consensus       165 ~~Pv~d~~g~~~G~rG~gv~r~~~~~~~  192 (820)
T Consensus        85 ~~pi~d~~G~~~g~--v~~~~DITerKq  110 (110)
T pfam08448        85 LTPLRDPDGEVIGV--LVISRDITERRR  110 (110)
T ss_pred             EEEEECCCCCEEEE--EEEEEECCHHCC
T ss_conf             76689899999999--999998833129