HHsearch alignment for GI: 254780413 and conserved domain: smart00091

>smart00091 PAS PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press).

Probab=98.27  E-value=1.4e-06  Score=66.05  Aligned_cols=64  Identities=28%  Similarity=0.515  Sum_probs=56.5

Q ss_pred             HHHHHHHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             9999997422043078599838721568998848960320786443345645627789999988
Q gi|254780413|r  453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI  516 (820)
Q Consensus       453 ~L~~ile~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~  516 (820)
T Consensus         2 ~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~   65 (67)
T smart00091        2 RLRAILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGKSLLELIHPEDREEVQEALQRL   65 (67)
T ss_pred             HHHHHHHHHHHHHEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHCCHHHHHHHHHHHHHH
T ss_conf             7999999655798588699948998859999889099999599899946998999999999987