HHsearch alignment for GI: 254780413 and conserved domain: smart00091

>smart00091 PAS PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press).

Probab=97.74  E-value=3.4e-05  Score=55.97  Aligned_cols=43  Identities=14%  Similarity=0.131  Sum_probs=40.0

Q ss_pred             EEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCC
Q ss_conf             5999979990999667899662899789749968882040168
Q gi|254780413|r   85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI  127 (820)
Q Consensus        85 fvw~~D~eGr~~~vn~~~~~~~G~~~~e~iGr~~~e~~~~~~~  127 (820)
T Consensus        13 ~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~~~~~~~~~~~~   55 (67)
T smart00091       13 GIFVLDLDGRILYANPAAEELLGYSPEELIGKSLLELIHPEDR   55 (67)
T ss_pred             HHEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHCCHHHH
T ss_conf             9858869994899885999988909999959989994699899