HHsearch alignment for GI: 254780413 and conserved domain: smart00387

>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.95  E-value=2.7e-27  Score=217.78  Aligned_cols=111  Identities=33%  Similarity=0.582  Sum_probs=102.3

Q ss_pred             ECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCHH
Q ss_conf             88899999999999888871889787999999804994999999788978988866423771873478766678886068
Q gi|254780413|r  699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL  778 (820)
Q Consensus       699 ~D~~~l~Qvl~NLl~NAik~t~~gg~v~v~~~~~~~~~v~i~V~DtG~GI~~~~~~~iFepF~~~~~~~~~~~~GtGLGL  778 (820)
T Consensus         1 ~d~~~l~~il~Nli~NAik~~~~~~~I~i~~~~~-~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~~~g~GlGL   78 (111)
T smart00387        1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERD-GDHLEITVEDNGPGIPPEDLEKIFEPFFRTDGR-SRKIGGTGLGL   78 (111)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC-CCEEEEEEEECCCCCCHHHHHHCCCCCEECCCC-CCCCCCCCHHH
T ss_conf             9889999999999999999677997899999983-999999999889973989996426994777999-98879766489


Q ss_pred             HHHHHHHHHCCCEEEEEEECCCCEEEEEEECCC
Q ss_conf             999999996198699997889953999996357
Q gi|254780413|r  779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY  811 (820)
Q Consensus       779 ai~k~iVe~hgG~i~v~S~pG~Gt~f~v~lP~~  811 (820)
T Consensus        79 ~i~~~i~~~~~G~i~i~s~~~~Gt~~~i~lP~~  111 (111)
T smart00387       79 SIVKKLVELHGGEISVESEPGGGTTFTITLPLE  111 (111)
T ss_pred             HHHHHHHHHCCCEEEEEECCCCEEEEEEEEECC
T ss_conf             999999998799899996599818999999819