BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Liberibacter asiaticus str. psy62] (820 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Liberibacter asiaticus str. psy62] gi|254040090|gb|ACT56886.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 1697 bits (4394), Expect = 0.0, Method: Compositional matrix adjust. Identities = 820/820 (100%), Positives = 820/820 (100%) Query: 1 MSTDSIISNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQE 60 MSTDSIISNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQE Sbjct: 1 MSTDSIISNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQE 60 Query: 61 SVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD 120 SVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD Sbjct: 61 SVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD 120 Query: 121 VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG 180 VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG Sbjct: 121 VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG 180 Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV Sbjct: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240 Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF Sbjct: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI Sbjct: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK Sbjct: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA Sbjct: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS Sbjct: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL Sbjct: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE Sbjct: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP Sbjct: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL Sbjct: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI Sbjct: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 >gi|315122143|ref|YP_004062632.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495545|gb|ADR52144.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 806 Score = 1054 bits (2725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 529/813 (65%), Positives = 631/813 (77%), Gaps = 18/813 (2%) Query: 1 MSTDSIISNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPC-HDSFEQSNFTDQN- 58 MS DSI NP + T+NCK ++DLS K+ N S K NPC + EQS+ T QN Sbjct: 1 MSIDSITLNPPNSPTNNCKNTSKDLSLKETINNLGIRDSHKGNPCNQNHLEQSSPTGQNH 60 Query: 59 --QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGM 116 + +S + L+ EN+F+FD PRTVRFTW IDA G+L +SEEL +TIG YA KMIGM Sbjct: 61 APRTQISCSRNLEPENSFLFDSSPRTVRFTWKIDAQGHLNAVSEELSQTIGTYALKMIGM 120 Query: 117 RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFS 176 LCD++ IL ID +H+ DLL +QNTWY KTT WPIEGT+L+VPIDLAALPIYSR+REF Sbjct: 121 HLCDINHILQIDSKDHLFDLLTQQNTWYSKTTFWPIEGTDLHVPIDLAALPIYSRDREFV 180 Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236 GF+GFGI+ VN+ NDP+ LG L +KFS HEIKK HS ++KE Q+ P HL + Sbjct: 181 GFKGFGIIRVNQTKNDPKKLGTTLGEKFSQSHEIKKVHSFIKKENSPSLPYQTIPAHLDI 240 Query: 237 KNKVSSLTEYYAH-KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295 K++ S + Y+ KDD L T K ++ ++++FHTINLNQY +K + Sbjct: 241 KDRGSFPSGYFPKDKDDNLATNK-------KNYFSKRDNFHTINLNQYIEKY------PH 287 Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK 355 KESFE NHPSLS YF EGENLTPE VDK PI FV S L YA+PSFLLL YK Sbjct: 288 PKESFEDSFQINHPSLSTYFGEGENLTPEIVDKHPISLFVCSKERLLYASPSFLLLAGYK 347 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 SV+DIE GG+S LLDA KLS+ N + L+RSD T IA SA LHTIQWNRENSLAMTF Sbjct: 348 SVEDIEKVGGVSMLLDAQKLSNGNTHGSITLHRSDGTNIAVSAHLHTIQWNRENSLAMTF 407 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 +PFEK N+ +++ QN I+ +TR + KMEIE+MQLCSILE+TSDGIAI+NR+G IL Sbjct: 408 VPFEKNNKLSDHISQNEIKSGYNNTRTDANKMEIEIMQLCSILESTSDGIAIVNRDGTIL 467 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 STNRA+ LF YP +DI+ KPF +F + +MNH + EI S+DL +TLEK +G T+E Sbjct: 468 STNRAIGTLFDYPAQDIIGKPFKIFFTHDNQIIMNHCMAEISSIDLGKTLEKTAVGCTRE 527 Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 KL+SLRI +KKLPFS+CY L +HDISEWKQEKN+L HAKK+AEKE+SHK+DFLARVSHE Sbjct: 528 GKLISLRITMKKLPFSACYCLILHDISEWKQEKNELYHAKKMAEKENSHKNDFLARVSHE 587 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 IRTPLTAIIGFSEVIKNQRFGP+G+PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM Sbjct: 588 IRTPLTAIIGFSEVIKNQRFGPVGSPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 647 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 N HFE VSL+E +SEAISL++LYANEKRIL+RTSF+N+IP I ADLRS+KQIALNILSNA Sbjct: 648 NFHFESVSLNETISEAISLMELYANEKRILVRTSFSNDIPPIFADLRSIKQIALNILSNA 707 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 IHFTPSGGQI+IST +T N+EV+LRV+DTG+GMT+YELEKAMKPFGQIPNSQQ+RGEGTG Sbjct: 708 IHFTPSGGQIVISTAYTRNKEVVLRVKDTGIGMTDYELEKAMKPFGQIPNSQQVRGEGTG 767 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 LGLPL KAMVDANMGKF +FSTP+KGTLIEIIF Sbjct: 768 LGLPLTKAMVDANMGKFSVFSTPSKGTLIEIIF 800 >gi|150395544|ref|YP_001326011.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium medicae WSM419] gi|150027059|gb|ABR59176.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium medicae WSM419] Length = 1138 Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust. Identities = 317/841 (37%), Positives = 458/841 (54%), Gaps = 102/841 (12%) Query: 35 ETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGY 94 ETEK+ EN DQ +E+ FVF R VRF W IDA G+ Sbjct: 327 ETEKASSENAVE--------ADQRREAAD----------FVFAAGGRAVRFVWKIDAEGH 368 Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154 EISEE +G A +IG+ +++ +DP+N I +LL R++TW GKT WP++G Sbjct: 369 FSEISEEFASAVGPKAADVIGVTFTELAGRYGLDPDNRINELLHRRDTWSGKTIFWPVQG 428 Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL-------------- 200 TNL VP+DLAALP YSR+REF GFRGFGIV V D +A G L Sbjct: 429 TNLKVPVDLAALPTYSRSREFDGFRGFGIVRVADAVPDAKAAGLSLDRAPAQKSSAAPEG 488 Query: 201 ---------------DKKFSHLHEIKKGHSSVEKEKYDIFSQQSP----------PPH-- 233 D++ + K D F + P PP Sbjct: 489 ADGPNAGSPPETGPADRRHAEAGNGKDAERVAPDPSEDPFRGEQPALRAVDTPDRPPSDK 548 Query: 234 -----LRMKNKVSSLT--EYYAHKDDVLKTEKY-------PLLTSEESSLPEQEDFHTIN 279 R +LT E A ++ + ++ P +E S PE E F T Sbjct: 549 IIDLDQRRPAGAGTLTRGEQAAFREIAKQLGEHFSVHDPLPPSQTEAESRPEAETFPTSK 608 Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339 + ++ + ++ E + P A G ++ ET+D+ P+ V+ Sbjct: 609 PANAEENEHTEATEAAGEQKSEAPAAAMEPGPPAR--TGAGISSETLDRLPVALLVHHGD 666 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP---VMLYRSDRTCIAA 396 L + N FL LT Y +D GGL L ++ A +P + L R D I Sbjct: 667 ELLHGNAEFLRLTGYDDLDAFAHEGGLEALF--ALGNEAGAARPDGTMTLVRKDGRLIPV 724 Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 A LH+I+W +++L + P + + D ++ ++ +E+ +L S Sbjct: 725 GAHLHSIRWEGKSALMLALTP--------AGASEAERQARDAESAAEASRLRMEIDELRS 776 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TVFLEQNTPSVMN----- 510 ILE +DG+ ++ +EG I + NR+ S LF Y ++ KPF T+F ++ +V++ Sbjct: 777 ILETATDGVVVLGQEGDIRTMNRSASALFDYDEAEMRGKPFATLFAHESQKAVIDYLHGL 836 Query: 511 --HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568 H + +L+ D R+ + + G + L + I +L S+ Y + DI++WK+ + Sbjct: 837 AGHGVASVLN-DGREVIGREAAGG-----FIPLFMTIGRLSSSNGYCAVIRDITQWKRTE 890 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L +AK+ AE ++HK++FLARVSHEIRTPL AIIGFS+++ ++ FGP+G+PRYIEYA Sbjct: 891 EELRNAKRAAETANAHKTEFLARVSHEIRTPLNAIIGFSDMMASEHFGPIGHPRYIEYAG 950 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I RSG VLDIVNDLLDISKIE+G+M+L F V L+EAVSEA+SLVQ AN +R++IRT Sbjct: 951 DIGRSGRHVLDIVNDLLDISKIEAGEMDLDFGAVDLNEAVSEAVSLVQPQANSQRVIIRT 1010 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 S + ++P ++AD RS+KQIALNIL+NAI FTPSGGQI++ST++ +N VILR+RDTG+GM Sbjct: 1011 SLSGSVPEVVADDRSIKQIALNILANAIRFTPSGGQIVVSTSYEANGSVILRIRDTGIGM 1070 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 T EL++AMKPF Q+ + RG+GTGLGLPL KAM +AN +F I S P +GTL+E+ F Sbjct: 1071 TRNELDQAMKPFRQVTTGGRKRGDGTGLGLPLTKAMTEANRAQFAITSAPNEGTLVEVSF 1130 Query: 809 P 809 P Sbjct: 1131 P 1131 >gi|227820916|ref|YP_002824886.1| predicted sensor histidine kinase protein with ATP-binding domain [Sinorhizobium fredii NGR234] gi|227339915|gb|ACP24133.1| predicted sensor histidine kinase protein with ATP-binding domain [Sinorhizobium fredii NGR234] Length = 1117 Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust. Identities = 308/783 (39%), Positives = 438/783 (55%), Gaps = 54/783 (6%) Query: 74 FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133 F F P R VRF W IDA G EISEE +G + ++G+ +++ +DP+N + Sbjct: 335 FTFTPGSRAVRFVWKIDAEGCFSEISEEFAAAVGPKSADVVGLTFSELAARYDLDPDNKV 394 Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 LL R++TW GKT LWPIEGT+L VP+DLAALP YSR+REF GFRGFGIV + D Sbjct: 395 NALLHRRDTWSGKTILWPIEGTSLKVPVDLAALPTYSRSREFDGFRGFGIVRIADAVEDE 454 Query: 194 RALGKRLDKKFSHLHE----------IKKGHSSVEKEKYDI-FSQQSPP----------P 232 +A G L + +E + +S+ + D S+ PP P Sbjct: 455 KASGLSLGHIDTPRNEGMPAEAPSDDAPREPASLASDGTDTPRSEAEPPSAEDPFAGERP 514 Query: 233 HLRM--------KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ--EDFHTINLNQ 282 LR+ +KV L E+ L + L Q E ++ Sbjct: 515 ALRIVDIPARPPSDKVIDLDEHRPGSSGTLTRGEQAAFREIARQLGAQFSETTPPAAADE 574 Query: 283 YTKKQYFGTLQNNSKESFEYLSH------RNHPSLSAYFDE-------GENLTPETVDKC 329 K+ Q + E LS R ++ DE G ++ E +D+ Sbjct: 575 DGKRPVDAASQAEAAGDMESLSSEDATAARQEETMPGAGDEAPPAPRGGVGMSSEILDRL 634 Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM-LYR 388 P+ ++ L +ANP FL LT Y+ ++ + AGGL L S + M L R Sbjct: 635 PVALLIHHGDELLHANPEFLRLTGYRKLEAFQQAGGLEALFAYGAESGEHEPDGTMTLVR 694 Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 ++ SA LH+IQW ++L + P +MP G + + + ++ Sbjct: 695 ANGPLAPVSAHLHSIQWEGRSALMLALAPAAARAA---DMPSAGADA----SAGGEARLR 747 Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 +E+ +L SILE +DG+ ++ ++G I + N + S LF Y +++ KPF + Sbjct: 748 MEIDELRSILETATDGVVVLGQDGDIRTMNGSASALFNYDEDEMRGKPFAALFAHESQKA 807 Query: 509 MNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566 + YL + + L + +G L L + I +L S+ Y + DI++WK+ Sbjct: 808 VIDYLQGLSGHGVASVLNDGREAIGREAGGGFLPLFMTIGRLSSSNGYCAVIRDITQWKR 867 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + +L +AK+ AE ++HK++FLARVSHEIRTPL AIIGFS+++ ++ FGP+GNPRYIEY Sbjct: 868 TEEELRNAKRSAETANAHKTEFLARVSHEIRTPLNAIIGFSDMMASEHFGPIGNPRYIEY 927 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 A I RSG VLDIVNDLLDISKIE+G+M L F V L+EAVSEA+SLVQ AN +R++I Sbjct: 928 AGDIGRSGRHVLDIVNDLLDISKIEAGEMELDFSAVDLNEAVSEAVSLVQPQANSQRVII 987 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 RTS + ++P ++AD RS+KQIALNIL+NAI FTPSGGQI++ST++ +N VILR+RDTG+ Sbjct: 988 RTSLSGSVPEVVADGRSIKQIALNILANAIRFTPSGGQIVVSTSYETNGSVILRIRDTGI 1047 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 GMT EL++AMKPF Q+ + RGEGTGLGLPL KAM +AN +F I S P +GTL+EI Sbjct: 1048 GMTRNELDQAMKPFRQVTTGGRKRGEGTGLGLPLTKAMAEANRAQFGISSAPNEGTLVEI 1107 Query: 807 IFP 809 FP Sbjct: 1108 SFP 1110 >gi|239834297|ref|ZP_04682625.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG 3301] gi|239822360|gb|EEQ93929.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG 3301] Length = 1047 Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust. Identities = 292/784 (37%), Positives = 444/784 (56%), Gaps = 51/784 (6%) Query: 74 FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133 FVFD RF W + G EIS +L TIG A ++G R DV+++ DP+ I Sbjct: 260 FVFDQDAPPARFIWKVGPDGAFTEISPDLAATIGPNAADVVGRRFADVANVFGFDPDGSI 319 Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 LL +++TW GK +WP+EGT+L VP++LAALP+YSR+REF+GFRGFG+V + DP Sbjct: 320 AALLDKRDTWSGKRLMWPVEGTDLRVPVELAALPVYSRDREFTGFRGFGVVRPADAEKDP 379 Query: 194 RALGKRLDKKFSH----LHEIKKGHSSVEKEKYDIFSQQ------------------SPP 231 +G L + E + +SVE + S++ +P Sbjct: 380 EEIGLVLAGGIPQTRKPVSETVETVTSVEDDDILALSEEVANDDRPVATLPKPPLDIAPT 439 Query: 232 PHLRMKNKVSSL------TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285 P R +KV SL + A + +LK + + E+ F I + Sbjct: 440 PGRRESDKVISLLNACAQEKVAADQARILKEREREERPEGGLTKTERNAFREIA--DRLR 497 Query: 286 KQYFGTLQNNSKE---SFEYLSHRNHPSL---SAYFDEGENLTPET--VDKCPIPFFVYS 337 KQ + ++ S+ S E ++ P +A G ET + P+P ++S Sbjct: 498 KQGLASSRSTSEPGALSEEAVADSPQPVAVEEAALHTPGPTHGDETALLANLPVPVIIHS 557 Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397 + Y N + L LT Y+S+DDI AGG+ L ++ + D + ++L R+D + Sbjct: 558 GDTIHYVNQALLDLTGYESLDDIRGAGGVDVLFNS-ESDDGETRQGMVLRRADGSEEPVD 616 Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFP--ENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 A L+ I W +L ++ +P E P +D K+ + V +L Sbjct: 617 AHLNAIAWRDGRALMLSLMPVAAPATPAPVETAAAPVETPVAMDKDNEKQALADHVEELK 676 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +IL+ +DG+ +I+ EG I S N + S LFGY E+ K F++ + YL Sbjct: 677 TILDTATDGVVLIDPEGRIRSMNHSASALFGYDREETEGKFFSMLFAIESQRAAMDYLHG 736 Query: 516 ILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 + + L + +G + + L + I KLP + + + DI++WK+ + +L++ Sbjct: 737 LSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEEELTN 796 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A+K AE+ SS K++FLAR+SHEIRTPL AIIGFSE++ +++FGP+GN RY +Y I+RS Sbjct: 797 ARKEAERASSQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRDINRS 856 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 GN VL +VNDLLDISKIE+G +++ FE VSL++A++EAI+L+Q AN +R++IR+SF +N Sbjct: 857 GNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIAEAIALMQPQANRERVIIRSSFQSN 916 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 +P I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST++ N +V++RVRDTG+GMT E+ Sbjct: 917 LPDIVADTRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMRVRDTGIGMTKSEV 976 Query: 754 EKAMKPFGQI--------PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 E+A+KPF Q+ +++ R EGTGLGLPL KAMV+AN +F I STP GT++E Sbjct: 977 EQALKPFRQVNALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSTPGHGTVVE 1036 Query: 806 IIFP 809 I FP Sbjct: 1037 IAFP 1040 >gi|153011243|ref|YP_001372457.1| PAS/PAC sensor signal transduction histidine kinase [Ochrobactrum anthropi ATCC 49188] gi|223635612|sp|A6X5X4|PDHS_OCHA4 RecName: Full=Cell-division control histidine kinase pdhS gi|151563131|gb|ABS16628.1| PAS/PAC sensor signal transduction histidine kinase [Ochrobactrum anthropi ATCC 49188] Length = 1055 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 291/802 (36%), Positives = 442/802 (55%), Gaps = 74/802 (9%) Query: 73 TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132 +FVF+ RF W + G EIS +L TIG A ++G R DV+++ DP+ Sbjct: 256 SFVFEQDAPPARFIWKVGPDGTFSEISPDLAATIGPNAADVVGRRFADVANVFGFDPDGS 315 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 I LL +++TW GK +WP+EGT+L VP++LAALP+YSR+REF+GFRGFG+V + D Sbjct: 316 IAALLDKRDTWSGKRLMWPVEGTDLRVPVELAALPVYSRDREFTGFRGFGLVRPAEAEKD 375 Query: 193 PRALGKRL-----------------------DKKFSHLHEIKKGHSSVE---KEKYDIFS 226 P +G L D + E+ S V K DI Sbjct: 376 PEEIGLVLAGGIPQARKPVSEPVETATPVEDDDVLALGEEVANDDSPVATLPKPPLDI-- 433 Query: 227 QQSPPPHLRMKNKVSSLTEYYAHK----DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282 +P P R +KV SL A + D ++ E L + E + Sbjct: 434 --APTPGRRESDKVISLLNACAEEKVAADQARMLKEREREERPEGGLTKTERNAFREIAD 491 Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSL------------SAYFDE-----------GE 319 +KQ NS+ E ++ + P + ++ DE G Sbjct: 492 RLRKQGLA----NSRAETETVAISDEPVIDSSQPVEKTEVKASLIDEVTADEASLPSSGM 547 Query: 320 NLTPET--VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 ET + P+P ++S + Y N + L LT Y+S+DDI AGG+ L ++ + D Sbjct: 548 AYGDETALLANLPVPVIIHSGDKIHYVNQALLDLTGYESLDDIRGAGGVDVLFNS-ESDD 606 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + ++L R++ + A L+ I W +L ++ +P A E + P Sbjct: 607 GETRQGMVLRRANGSEEPVDAHLNAISWREGRALMLSLMPVAAAPVSVEAVAAPAEAPVA 666 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 +D K+ + V +L +IL+ +DG+ +I+ EG I S N + S LFGY ++ K F Sbjct: 667 IDKDDEKQALADHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDETEGKFF 726 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 ++ + YL + + L + +G + + L + I KLP + + Sbjct: 727 SMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFC 786 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + DI++WK+ + +L++A+K AE+ SS K++FLAR+SHEIRTPL AIIGFSE++ +++F Sbjct: 787 AVLRDITQWKRTEEELTNARKEAERASSQKTEFLARISHEIRTPLNAIIGFSELMADEKF 846 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G +GN RY +Y I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A++EAI+L+ Sbjct: 847 GSIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIAEAIALM 906 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 Q AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST++ N Sbjct: 907 QPQANRERVIIRSSFQSNLPDIVADTRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEMNG 966 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQI--------PNSQQIRGEGTGLGLPLAKAMVDA 787 +V++RVRDTG+GMT E+E+A+KPF Q+ ++ R EGTGLGLPL KAMV+A Sbjct: 967 DVVMRVRDTGIGMTKSEVEQALKPFRQVNALERRKAETAKDWRSEGTGLGLPLTKAMVEA 1026 Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809 N +F I STP GT++EI FP Sbjct: 1027 NRAQFAIDSTPGHGTVVEIAFP 1048 >gi|306844607|ref|ZP_07477194.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. BO1] gi|306275051|gb|EFM56814.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. BO1] Length = 1036 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 286/784 (36%), Positives = 440/784 (56%), Gaps = 61/784 (7%) Query: 73 TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132 TF FD RF W + G EIS +L +G + ++G R DV+++ D + Sbjct: 260 TFAFDHDAPPARFIWKVGPDGTFSEISPDLAAVVGPNSADIVGRRFSDVANVFGFDTDGS 319 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 I LL ++TW GK LWP+EGT L VP++LAALP+YSR+REF GFRGFGIV + D Sbjct: 320 IAALLLERDTWSGKRLLWPVEGTRLRVPVELAALPVYSRDREFLGFRGFGIVRPAEAEAD 379 Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEK--EKYDIFSQQ--------------------SP 230 P +G L + +K + + + DI + +P Sbjct: 380 PEEIGLALAGGIPQNRKPRKEPAETARMVGEDDILALSEEVANDDQPAAVLPKPPLDITP 439 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE-------QEDFHTINLNQY 283 P R +KV SL A + K+ L E ++ PE + F I + Sbjct: 440 TPGRRDSDKVISLLNSCAQEKVAADQAKF-LKEKERTARPEGGLTKTERNAFREIA--ER 496 Query: 284 TKKQYFGTLQNNSKESFEYLSHRNH-------PSLSAYFDEGENLTPETVDKCPIPFFVY 336 +KQ L N ES +S + P + + + + P+P ++ Sbjct: 497 LRKQ---GLANTRAESETTVSETSSIEPVEPTPPVKTRSEPIQPDETALLANLPVPVIIH 553 Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396 S + Y N + L +T Y+S+DDI AGG+ L ++ + +D + ++L +D + Sbjct: 554 SGDAIHYVNQALLDITGYESLDDIRGAGGVDVLFNS-ESNDGETRQSMVLRHADGSEEPV 612 Query: 397 SARLHTIQWNRENSLAMTFIPFEKAN-QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 +A L+ I W +L ++ +P AN P +P + E K+ +E V +L Sbjct: 613 NAHLNAIAWRGGRALMLSLMPVAAANLPVPAELPAASDDEE-------KQALEAHVEELK 665 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +IL+ +DG+ +I+ EG I S N + S LFGY ++ K F++ + YL Sbjct: 666 TILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEAEGKFFSMLFAIESQRAAMDYLHG 725 Query: 516 ILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 + + L + +G + + L + I KLP + + + DI++WK+ + +L++ Sbjct: 726 LSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEEELTN 785 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ +++FGP+GN RY +Y I+RS Sbjct: 786 ARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRDINRS 845 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 GN VL +VNDLLDISKIE+G +++ FE VSL++A+ EAI+L+Q AN +R++IR+SF +N Sbjct: 846 GNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSSFQSN 905 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 +P I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST++ N +V++RVRDTG+GM+ E+ Sbjct: 906 LPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMRVRDTGIGMSKSEV 965 Query: 754 EKAMKPFGQI--------PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 E+A+KPF QI +++ R EGTGLGLPL KAMV+AN +F I S P +GT++E Sbjct: 966 EQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQGTVVE 1025 Query: 806 IIFP 809 I+FP Sbjct: 1026 IVFP 1029 >gi|254714821|ref|ZP_05176632.1| sensory box histidine kinase [Brucella ceti M644/93/1] gi|254717879|ref|ZP_05179690.1| sensory box histidine kinase [Brucella ceti M13/05/1] gi|261219725|ref|ZP_05934006.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti M13/05/1] gi|261322615|ref|ZP_05961812.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti M644/93/1] gi|260924814|gb|EEX91382.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti M13/05/1] gi|261295305|gb|EEX98801.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti M644/93/1] Length = 1035 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 288/783 (36%), Positives = 439/783 (56%), Gaps = 60/783 (7%) Query: 73 TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132 TF FD RF W + G EIS +L +G + ++G R DV+++ D + Sbjct: 260 TFAFDHDAPPARFIWKVGPDGTFSEISPDLAAVVGPNSADIVGRRFSDVANVFGFDTDGS 319 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 I LL ++TW GK LWP+EGT L VP++LAALP+YSR+REF GFRGFGIV + D Sbjct: 320 IAALLLERDTWSGKRLLWPVEGTRLRVPVELAALPVYSRDREFLGFRGFGIVRPAEAEAD 379 Query: 193 PRALGKRLDKKFSHLHEIKKGHSS----VEKEKYDIFSQQ------------------SP 230 P +G L + +K + V ++ S++ +P Sbjct: 380 PEEIGLALAGGIPQNRKPRKEPAETARMVGEDDVLALSEEVANDDQPAAVLPKPPLDITP 439 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKY----PLLTSEESSLPEQEDFHTINLNQYTKK 286 P R +KV SL A + K+ T E L + E + + +K Sbjct: 440 TPGRRDSDKVISLLNSCAQEKVAADQAKFLKEKERATRPEGGLTKTERNAFREIAERLRK 499 Query: 287 QYFGTLQNNSKESFEYLSHRN-----HPSLSAYFDEGENLTPET---VDKCPIPFFVYSH 338 Q L N ES +S + P+L E + P+ + P+P ++S Sbjct: 500 Q---GLANTRAESETPVSETSSIEPVEPTLPVK-TRSEPIQPDETALLANLPVPVIIHSG 555 Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR-SDRTCIAAS 397 + Y N + L +T Y+S+DDI AGG+ L ++ SD+ + M+ R +D + Sbjct: 556 DAIHYVNQALLDITGYESLDDIRSAGGVDVLFNSE--SDDGETRQSMVLRHADGSEEPVD 613 Query: 398 ARLHTIQWNRENSLAMTFIPFEKAN-QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 A L+ I W +L ++ +P A+ P +P E K+ +E V +L + Sbjct: 614 AHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAANDE--------EKQALEAHVEELKT 665 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 IL+ +DG+ +I+ EG I S N + S LFGY ++ K F++ + YL + Sbjct: 666 ILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEAEGKFFSMLFAIESQRAAMDYLHGL 725 Query: 517 LSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574 + L + +G + + L + I KLP + + + DI++WK+ + +L++A Sbjct: 726 SGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEEELTNA 785 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 +K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ +++FGP+GN RY +Y I+RSG Sbjct: 786 RKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRDINRSG 845 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 N VL +VNDLLDISKIE+G +++ FE VSL++A+ EAI+L+Q AN +R++IR+SF +N+ Sbjct: 846 NHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSSFQSNL 905 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 P I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST++ N +V++RVRDTG+GM+ E+E Sbjct: 906 PDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMRVRDTGIGMSKSEVE 965 Query: 755 KAMKPFGQI--------PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 +A+KPF QI +++ R EGTGLGLPL KAMV+AN +F I S P +GT++EI Sbjct: 966 QALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQGTVVEI 1025 Query: 807 IFP 809 +FP Sbjct: 1026 VFP 1028 >gi|254694275|ref|ZP_05156103.1| sensory box histidine kinase [Brucella abortus bv. 3 str. Tulya] gi|261214583|ref|ZP_05928864.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 3 str. Tulya] gi|260916190|gb|EEX83051.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 3 str. Tulya] Length = 1035 Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust. Identities = 287/782 (36%), Positives = 436/782 (55%), Gaps = 58/782 (7%) Query: 73 TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132 TF FD RF W + G EIS +L IG + ++G R DV+++ D + Sbjct: 260 TFAFDHDAPPARFIWKVGPDGTFSEISPDLAAVIGPNSADIVGRRFSDVANVFGFDTDGS 319 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 I LL ++TW GK LWP+EGT L VP++LAALP+YSR+REF GFRGFGIV + D Sbjct: 320 IAALLLERDTWSGKRLLWPVEGTRLRVPVELAALPVYSRDREFLGFRGFGIVRPAEAEAD 379 Query: 193 PRALGKRLDKKFSHLHEIKKGHSS----VEKEKYDIFSQQ------------------SP 230 P +G L + +K + V ++ S++ +P Sbjct: 380 PEEIGLALAGGIPQNRKPRKEPAETARMVGEDDVLALSEEVANDDQPAAVLPKPPLDITP 439 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKY----PLLTSEESSLPEQEDFHTINLNQYTKK 286 P R +KV SL A + K+ T E L + E + + +K Sbjct: 440 TPGRRDSDKVISLLNSCAQEKVAADQAKFLKEKERATRPEGGLTKTERNAFREIAERLRK 499 Query: 287 QYFGTLQNNSKESFEYLSHRNH-------PSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339 Q L N ES +S + P + + + + P+P ++S Sbjct: 500 Q---GLANTRAESETPVSETSSIEPVEPTPPVKTRSEPIQPDETALLANLPVPVIIHSGD 556 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR-SDRTCIAASA 398 + Y N + L +T Y+S+DDI AGG+ L ++ SD+ + ML R +D + A Sbjct: 557 AIHYVNQALLDITGYESLDDIRSAGGVDVLFNSE--SDDGETRQSMLLRHADGSEEPVDA 614 Query: 399 RLHTIQWNRENSLAMTFIPFEKAN-QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 L+ I W +L ++ +P A+ P +P E K+ +E V +L +I Sbjct: 615 HLNAIAWRGGRALMLSLMPVTAADLPAPAELPAANDE--------EKQALEAHVEELKTI 666 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 L+ +DG+ +I+ EG I S N + S LFGY ++ K F++ + YL + Sbjct: 667 LDTATDGVVLIDPEGRIRSMNHSASALFGYERDEAEGKFFSMLFAIESQRAAMDYLHGLS 726 Query: 518 SLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 + L + +G + + L + I KLP + + + DI++WK+ + +L++A+ Sbjct: 727 GNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEEELTNAR 786 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ +++FGP+GN RY +Y I+RSGN Sbjct: 787 KEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRDINRSGN 846 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 VL +VNDLLDISKIE+G +++ FE VSL++A+ EAI+L+Q AN +R++IR+SF +N+P Sbjct: 847 HVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSSFQSNLP 906 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST++ N +V++RVRDTG+GM+ E+E+ Sbjct: 907 DIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMRVRDTGIGMSKSEVEQ 966 Query: 756 AMKPFGQI--------PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 A+KPF QI +++ R EGTGLGLPL KAMV+AN +F I S P +GT++EI+ Sbjct: 967 ALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQGTVVEIV 1026 Query: 808 FP 809 FP Sbjct: 1027 FP 1028 >gi|254689786|ref|ZP_05153040.1| sensory box histidine kinase [Brucella abortus bv. 6 str. 870] gi|256258039|ref|ZP_05463575.1| sensory box histidine kinase [Brucella abortus bv. 9 str. C68] gi|260755316|ref|ZP_05867664.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 6 str. 870] gi|260884335|ref|ZP_05895949.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 9 str. C68] gi|297248868|ref|ZP_06932586.1| cell-division control histidine kinase pdhS [Brucella abortus bv. 5 str. B3196] gi|260675424|gb|EEX62245.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 6 str. 870] gi|260873863|gb|EEX80932.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 9 str. C68] gi|297176037|gb|EFH35384.1| cell-division control histidine kinase pdhS [Brucella abortus bv. 5 str. B3196] Length = 1035 Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust. Identities = 286/782 (36%), Positives = 436/782 (55%), Gaps = 58/782 (7%) Query: 73 TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132 TF FD RF W + G EIS +L +G + ++G R DV+++ D + Sbjct: 260 TFAFDHDAPPARFIWKVGPDGTFSEISPDLAAVVGPNSADIVGRRFSDVANVFGFDTDGS 319 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 I LL ++TW GK LWP+EGT L VP++LAALP+YSR+REF GFRGFGIV + D Sbjct: 320 IAALLLERDTWSGKRLLWPVEGTRLRVPVELAALPVYSRDREFLGFRGFGIVRPAEAEAD 379 Query: 193 PRALGKRLDKKFSHLHEIKKGHSS----VEKEKYDIFSQQ------------------SP 230 P +G L + +K + V ++ S++ +P Sbjct: 380 PEEIGLALAGGIPQNRKPRKEPAETARMVGEDDVLALSEEVANDDQPAAVLPKPPLDITP 439 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKY----PLLTSEESSLPEQEDFHTINLNQYTKK 286 P R +KV SL A + K+ T E L + E + + +K Sbjct: 440 TPGRRDSDKVISLLNSCAQEKVAADQAKFLKEKERATRPEGGLTKTERNAFREIAERLRK 499 Query: 287 QYFGTLQNNSKESFEYLSHRNH-------PSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339 Q L N ES +S + P + + + + P+P ++S Sbjct: 500 Q---GLANTRAESETPVSETSSIEPVEPTPPVKTRSEPIQPDETALLANLPVPVIIHSGD 556 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR-SDRTCIAASA 398 + Y N + L +T Y+S+DDI AGG+ L ++ SD+ + ML R +D + A Sbjct: 557 AIHYVNQALLDITGYESLDDIRSAGGVDVLFNSE--SDDGETRQSMLLRHADGSEEPVDA 614 Query: 399 RLHTIQWNRENSLAMTFIPFEKAN-QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 L+ I W +L ++ +P A+ P +P E K+ +E V +L +I Sbjct: 615 HLNAIAWRGGRALMLSLMPVTAADLPAPAELPAANDE--------EKQALEAHVEELKTI 666 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 L+ +DG+ +I+ EG I S N + S LFGY ++ K F++ + YL + Sbjct: 667 LDTATDGVVLIDPEGRIRSMNHSASALFGYERDEAEGKFFSMLFAIESQRAAMDYLHGLS 726 Query: 518 SLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 + L + +G + + L + I KLP + + + DI++WK+ + +L++A+ Sbjct: 727 GNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEEELTNAR 786 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ +++FGP+GN RY +Y I+RSGN Sbjct: 787 KEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRDINRSGN 846 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 VL +VNDLLDISKIE+G +++ FE VSL++A+ EAI+L+Q AN +R++IR+SF +N+P Sbjct: 847 HVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSSFQSNLP 906 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST++ N +V++RVRDTG+GM+ E+E+ Sbjct: 907 DIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMRVRDTGIGMSKSEVEQ 966 Query: 756 AMKPFGQI--------PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 A+KPF QI +++ R EGTGLGLPL KAMV+AN +F I S P +GT++EI+ Sbjct: 967 ALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQGTVVEIV 1026 Query: 808 FP 809 FP Sbjct: 1027 FP 1028 >gi|62290486|ref|YP_222279.1| sensory box histidine kinase [Brucella abortus bv. 1 str. 9-941] gi|82700409|ref|YP_414983.1| PAS/histidine kinase/ATPase domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189024711|ref|YP_001935479.1| sensory box histidine kinase [Brucella abortus S19] gi|237815994|ref|ZP_04594991.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A] gi|254697930|ref|ZP_05159758.1| sensory box histidine kinase [Brucella abortus bv. 2 str. 86/8/59] gi|254730820|ref|ZP_05189398.1| sensory box histidine kinase [Brucella abortus bv. 4 str. 292] gi|260547015|ref|ZP_05822754.1| sensory box histidine kinase [Brucella abortus NCTC 8038] gi|260758539|ref|ZP_05870887.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 4 str. 292] gi|260762362|ref|ZP_05874705.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 2 str. 86/8/59] gi|75496411|sp|Q57BR6|PDHS_BRUAB RecName: Full=Cell-division control histidine kinase pdhS; AltName: Full=PleC-divJ homolog sensor gi|123768481|sp|Q2YRB4|PDHS_BRUA2 RecName: Full=Cell-division control histidine kinase pdhS gi|223635608|sp|B2S758|PDHS_BRUA1 RecName: Full=Cell-division control histidine kinase pdhS gi|62196618|gb|AAX74918.1| sensory box histidine kinase [Brucella abortus bv. 1 str. 9-941] gi|82616510|emb|CAJ11577.1| PAS domain:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Bacterial sensor protein, C-terminal:Histidine kinase [Brucella melitensis biovar Abortus 2308] gi|189020283|gb|ACD73005.1| sensory box histidine kinase [Brucella abortus S19] gi|237789292|gb|EEP63503.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A] gi|260096065|gb|EEW79942.1| sensory box histidine kinase [Brucella abortus NCTC 8038] gi|260668857|gb|EEX55797.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 4 str. 292] gi|260672794|gb|EEX59615.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 2 str. 86/8/59] Length = 1035 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 286/782 (36%), Positives = 435/782 (55%), Gaps = 58/782 (7%) Query: 73 TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132 TF FD RF W + G EIS L +G + ++G R DV+++ D + Sbjct: 260 TFAFDHDAPPARFIWKVGPDGTFSEISPNLAAVVGPNSADIVGRRFSDVANVFGFDTDGS 319 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 I LL ++TW GK LWP+EGT L VP++LAALP+YSR+REF GFRGFGIV + D Sbjct: 320 IAALLLERDTWSGKRLLWPVEGTRLRVPVELAALPVYSRDREFLGFRGFGIVRPAEAEAD 379 Query: 193 PRALGKRLDKKFSHLHEIKKGHSS----VEKEKYDIFSQQ------------------SP 230 P +G L + +K + V ++ S++ +P Sbjct: 380 PEEIGLALAGGIPQNRKPRKEPAETARMVGEDDVLALSEEVANDDQPAAVLPKPPLDITP 439 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKY----PLLTSEESSLPEQEDFHTINLNQYTKK 286 P R +KV SL A + K+ T E L + E + + +K Sbjct: 440 TPGRRDSDKVISLLNSCAQEKVAADQAKFLKEKERATRPEGGLTKTERNAFREIAERLRK 499 Query: 287 QYFGTLQNNSKESFEYLSHRNH-------PSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339 Q L N ES +S + P + + + + P+P ++S Sbjct: 500 Q---GLANTRAESETPVSETSSIEPVEPTPPVKTRSEPIQPDETALLANLPVPVIIHSGD 556 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR-SDRTCIAASA 398 + Y N + L +T Y+S+DDI AGG+ L ++ SD+ + ML R +D + A Sbjct: 557 AIHYVNQALLDITGYESLDDIRSAGGVDVLFNSE--SDDGETRQSMLLRHADGSEEPVDA 614 Query: 399 RLHTIQWNRENSLAMTFIPFEKAN-QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 L+ I W +L ++ +P A+ P +P E K+ +E V +L +I Sbjct: 615 HLNAIAWRGGRALMLSLMPVTAADLPAPAELPAANDE--------EKQALEAHVEELKTI 666 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 L+ +DG+ +I+ EG I S N + S LFGY ++ K F++ + YL + Sbjct: 667 LDTATDGVVLIDPEGRIRSMNHSASALFGYERDEAEGKFFSMLFAIESQRAAMDYLHGLS 726 Query: 518 SLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 + L + +G + + L + I KLP + + + DI++WK+ + +L++A+ Sbjct: 727 GNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEEELTNAR 786 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ +++FGP+GN RY +Y I+RSGN Sbjct: 787 KEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRDINRSGN 846 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 VL +VNDLLDISKIE+G +++ FE VSL++A+ EAI+L+Q AN +R++IR+SF +N+P Sbjct: 847 HVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSSFQSNLP 906 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST++ N +V++RVRDTG+GM+ E+E+ Sbjct: 907 DIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMRVRDTGIGMSKSEVEQ 966 Query: 756 AMKPFGQI--------PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 A+KPF QI +++ R EGTGLGLPL KAMV+AN +F I S P +GT++EI+ Sbjct: 967 ALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQGTVVEIV 1026 Query: 808 FP 809 FP Sbjct: 1027 FP 1028 >gi|256061652|ref|ZP_05451791.1| sensory box histidine kinase [Brucella neotomae 5K33] gi|261325661|ref|ZP_05964858.1| PAS/PAC sensor signal transduction histidine kinase [Brucella neotomae 5K33] gi|261301641|gb|EEY05138.1| PAS/PAC sensor signal transduction histidine kinase [Brucella neotomae 5K33] Length = 1035 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 285/782 (36%), Positives = 436/782 (55%), Gaps = 58/782 (7%) Query: 73 TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132 TF FD RF W + G EIS +L +G + ++G R DV+++ D + Sbjct: 260 TFAFDHDAPPARFIWKVGPDGTFSEISPDLAAVVGPNSADIVGRRFSDVANVFGFDTDGS 319 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 I LL ++TW GK LWP+EGT L VP++LAALP+YSR+REF GFRGFGIV + D Sbjct: 320 IAALLLERDTWSGKRLLWPVEGTRLRVPVELAALPVYSRDREFLGFRGFGIVRPAEAEAD 379 Query: 193 PRALGKRLDKKFSHLHEIKKGHSS----VEKEKYDIFSQQ------------------SP 230 P +G L + +K + V ++ S++ +P Sbjct: 380 PEEIGLALAGGIPQNRKPRKEPAETARMVGEDDVLALSEEVANDDQPAAVLPKPPLDITP 439 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKY----PLLTSEESSLPEQEDFHTINLNQYTKK 286 P R +KV SL A + K+ T E L + E + + +K Sbjct: 440 TPGRRDSDKVISLLNSCAQEKVAADQAKFLKEKERATRPEGGLTKTERNAFREIAERLRK 499 Query: 287 QYFGTLQNNSKESFEYLSHRNH-------PSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339 Q L N ES +S + P + + + + P+P ++S Sbjct: 500 Q---GLANTRAESETPVSETSSIEPVEPTPPVKTRSEPIQPDETALLANLPVPVIIHSGD 556 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR-SDRTCIAASA 398 + Y N + L +T Y+S+DDI AGG+ L ++ SD+ + M+ R +D + A Sbjct: 557 AIHYVNQALLDITGYESLDDIRSAGGVDVLFNSE--SDDGETRQSMVLRHADGSEEPVDA 614 Query: 399 RLHTIQWNRENSLAMTFIPFEKAN-QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 L+ I W +L ++ +P A+ P +P E K+ +E V +L +I Sbjct: 615 HLNAIAWRGGRALMLSLMPVTAADLPAPAELPAANDE--------EKQALEAHVEELKTI 666 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 L+ +DG+ +I+ EG I S N + S LFGY ++ K F++ + YL + Sbjct: 667 LDTATDGVVLIDPEGRIRSMNHSASALFGYERDEAEGKFFSMLFAIESQRAAMDYLHGLS 726 Query: 518 SLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 + L + +G + + L + I KLP + + + DI++WK+ + +L++A+ Sbjct: 727 GNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEEELTNAR 786 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ +++FGP+GN RY +Y I+RSGN Sbjct: 787 KEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRDINRSGN 846 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 VL +VNDLLDISKIE+G +++ FE VSL++A+ EAI+L+Q AN +R++IR+SF +N+P Sbjct: 847 HVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSSFQSNLP 906 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST++ N +V++RVRDTG+GM+ E+E+ Sbjct: 907 DIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMRVRDTGIGMSKSEVEQ 966 Query: 756 AMKPFGQI--------PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 A+KPF QI +++ R EGTGLGLPL KAMV+AN +F I S P +GT++EI+ Sbjct: 967 ALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQGTVVEIV 1026 Query: 808 FP 809 FP Sbjct: 1027 FP 1028 >gi|225853078|ref|YP_002733311.1| PAS domain S-box-containing protein [Brucella melitensis ATCC 23457] gi|256045221|ref|ZP_05448119.1| PAS domain S-box-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|256114174|ref|ZP_05454928.1| PAS domain S-box-containing protein [Brucella melitensis bv. 3 str. Ether] gi|256263438|ref|ZP_05465970.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9] gi|260565182|ref|ZP_05835666.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M] gi|265991654|ref|ZP_06104211.1| PAS/PAC sensor signal transduction histidine kinase [Brucella melitensis bv. 1 str. Rev.1] gi|265995492|ref|ZP_06108049.1| PAS/PAC sensor signal transduction histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|223635641|sp|Q8YIM6|PDHS_BRUME RecName: Full=Cell-division control histidine kinase pdhS gi|225641443|gb|ACO01357.1| PAS domain S-box-containing protein [Brucella melitensis ATCC 23457] gi|260151250|gb|EEW86344.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M] gi|262766605|gb|EEZ12394.1| PAS/PAC sensor signal transduction histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|263002438|gb|EEZ15013.1| PAS/PAC sensor signal transduction histidine kinase [Brucella melitensis bv. 1 str. Rev.1] gi|263093447|gb|EEZ17497.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9] gi|326409621|gb|ADZ66686.1| PAS domain S-box-containing protein [Brucella melitensis M28] gi|326539324|gb|ADZ87539.1| PAS domain S-box-containing protein [Brucella melitensis M5-90] Length = 1035 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 285/782 (36%), Positives = 436/782 (55%), Gaps = 58/782 (7%) Query: 73 TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132 TF FD RF W + G EIS +L +G + ++G R DV+++ D + Sbjct: 260 TFAFDHDAPPARFIWKVGPDGTFSEISPDLAAVVGPNSADIVGRRFSDVANVFGFDTDGS 319 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 I LL ++TW GK LWP+EGT L VP++LAALP+YSR+REF GFRGFGIV + D Sbjct: 320 IAALLLERDTWSGKRLLWPVEGTRLRVPVELAALPVYSRDREFLGFRGFGIVRPAEAEAD 379 Query: 193 PRALGKRLDKKFSHLHEIKKGHSS----VEKEKYDIFSQQ------------------SP 230 P +G L + +K + V ++ S++ +P Sbjct: 380 PEEIGLALAGGIPQNRKPRKEPAETARMVGEDDVLALSEEVANDDHPAAVLPKPPLDITP 439 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKY----PLLTSEESSLPEQEDFHTINLNQYTKK 286 P R +KV SL A + K+ T E L + E + + +K Sbjct: 440 TPGRRDSDKVISLLNSCAQEKVAANQAKFLKEKERATRPEGGLTKTERNAFREIAERLRK 499 Query: 287 QYFGTLQNNSKESFEYLSHRNH-------PSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339 Q L N ES +S + P + + + + P+P ++S Sbjct: 500 Q---GLANTRAESETPVSETSSIEPVEPTPPVKTRSEPIQPDETALLANLPVPVIIHSGD 556 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR-SDRTCIAASA 398 + Y N + L +T Y+S+DDI AGG+ L ++ SD+ + M+ R +D + A Sbjct: 557 AIHYVNQALLDITGYESLDDIRSAGGVDVLFNSE--SDDGETRQSMVLRHADGSEEPVDA 614 Query: 399 RLHTIQWNRENSLAMTFIPFEKAN-QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 L+ I W +L ++ +P A+ P +P E K+ +E V +L +I Sbjct: 615 HLNAIAWRGGRALMLSLMPVTAADLPAPAELPAANDE--------EKQALEAHVEELKTI 666 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 L+ +DG+ +I+ EG I S N + S LFGY ++ K F++ + YL + Sbjct: 667 LDTATDGVVLIDPEGRIRSMNHSASALFGYERDEAEGKFFSMLFAIESQRAAMDYLHGLS 726 Query: 518 SLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 + L + +G + + L + I KLP + + + DI++WK+ + +L++A+ Sbjct: 727 GNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEEELTNAR 786 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ +++FGP+GN RY +Y I+RSGN Sbjct: 787 KEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRDINRSGN 846 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 VL +VNDLLDISKIE+G +++ FE VSL++A+ EAI+L+Q AN +R++IR+SF +N+P Sbjct: 847 HVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSSFQSNLP 906 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST++ N +V++RVRDTG+GM+ E+E+ Sbjct: 907 DIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMRVRDTGIGMSKSEVEQ 966 Query: 756 AMKPFGQI--------PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 A+KPF QI +++ R EGTGLGLPL KAMV+AN +F I S P +GT++EI+ Sbjct: 967 ALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQGTVVEIV 1026 Query: 808 FP 809 FP Sbjct: 1027 FP 1028 >gi|225628039|ref|ZP_03786075.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo] gi|254702323|ref|ZP_05164151.1| sensory box histidine kinase [Brucella suis bv. 5 str. 513] gi|254710637|ref|ZP_05172448.1| sensory box histidine kinase [Brucella pinnipedialis B2/94] gi|256032130|ref|ZP_05445744.1| sensory box histidine kinase [Brucella pinnipedialis M292/94/1] gi|256160326|ref|ZP_05458020.1| sensory box histidine kinase [Brucella ceti M490/95/1] gi|256255531|ref|ZP_05461067.1| sensory box histidine kinase [Brucella ceti B1/94] gi|256370019|ref|YP_003107530.1| sensory box histidine kinase [Brucella microti CCM 4915] gi|260169265|ref|ZP_05756076.1| sensory box histidine kinase [Brucella sp. F5/99] gi|261222740|ref|ZP_05937021.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti B1/94] gi|261318208|ref|ZP_05957405.1| PAS/PAC sensor signal transduction histidine kinase [Brucella pinnipedialis B2/94] gi|261752887|ref|ZP_05996596.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis bv. 5 str. 513] gi|261758777|ref|ZP_06002486.1| sensory box histidine kinase [Brucella sp. F5/99] gi|265989241|ref|ZP_06101798.1| PAS/PAC sensor signal transduction histidine kinase [Brucella pinnipedialis M292/94/1] gi|265998702|ref|ZP_06111259.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti M490/95/1] gi|225617202|gb|EEH14248.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo] gi|256000182|gb|ACU48581.1| sensory box histidine kinase [Brucella microti CCM 4915] gi|260921324|gb|EEX87977.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti B1/94] gi|261297431|gb|EEY00928.1| PAS/PAC sensor signal transduction histidine kinase [Brucella pinnipedialis B2/94] gi|261738761|gb|EEY26757.1| sensory box histidine kinase [Brucella sp. F5/99] gi|261742640|gb|EEY30566.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis bv. 5 str. 513] gi|262553326|gb|EEZ09160.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti M490/95/1] gi|264661438|gb|EEZ31699.1| PAS/PAC sensor signal transduction histidine kinase [Brucella pinnipedialis M292/94/1] Length = 1035 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 285/782 (36%), Positives = 436/782 (55%), Gaps = 58/782 (7%) Query: 73 TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132 TF FD RF W + G EIS +L +G + ++G R DV+++ D + Sbjct: 260 TFAFDHDAPPARFIWKVGPDGTFSEISPDLAAVVGPNSADIVGRRFSDVANVFGFDTDGS 319 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 I LL ++TW GK LWP+EGT L VP++LAALP+YSR+REF GFRGFGIV + D Sbjct: 320 IAALLLERDTWSGKRLLWPVEGTRLRVPVELAALPVYSRDREFLGFRGFGIVRPAEAEAD 379 Query: 193 PRALGKRLDKKFSHLHEIKKGHSS----VEKEKYDIFSQQ------------------SP 230 P +G L + +K + V ++ S++ +P Sbjct: 380 PEEIGLALAGGIPQNRKPRKEPAETARMVGEDDVLALSEEVANDDQPAAVLPKPPLDITP 439 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKY----PLLTSEESSLPEQEDFHTINLNQYTKK 286 P R +KV SL A + K+ T E L + E + + +K Sbjct: 440 TPGRRDSDKVISLLNSCAQEKVAADQAKFLKEKERATRPEGGLTKTERNAFREIAERLRK 499 Query: 287 QYFGTLQNNSKESFEYLSHRNH-------PSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339 Q L N ES +S + P + + + + P+P ++S Sbjct: 500 Q---GLANTRAESETPVSETSSIEPVEPTPPVKTRSEPIQPDETALLANLPVPVIIHSGD 556 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR-SDRTCIAASA 398 + Y N + L +T Y+S+DDI AGG+ L ++ SD+ + M+ R +D + A Sbjct: 557 AIHYVNQALLDITGYESLDDIRSAGGVDVLFNSE--SDDGETRQSMVLRHADGSEEPVDA 614 Query: 399 RLHTIQWNRENSLAMTFIPFEKAN-QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 L+ I W +L ++ +P A+ P +P E K+ +E V +L +I Sbjct: 615 HLNAIAWRGGRALMLSLMPVTAADLPAPAELPAANDE--------EKQALEAHVEELKTI 666 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 L+ +DG+ +I+ EG I S N + S LFGY ++ K F++ + YL + Sbjct: 667 LDTATDGVVLIDPEGRIRSMNHSASALFGYERDEAEGKFFSMLFAIESQRAAMDYLHGLS 726 Query: 518 SLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 + L + +G + + L + I KLP + + + DI++WK+ + +L++A+ Sbjct: 727 GNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEEELTNAR 786 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ +++FGP+GN RY +Y I+RSGN Sbjct: 787 KEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRDINRSGN 846 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 VL +VNDLLDISKIE+G +++ FE VSL++A+ EAI+L+Q AN +R++IR+SF +N+P Sbjct: 847 HVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSSFQSNLP 906 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST++ N +V++RVRDTG+GM+ E+E+ Sbjct: 907 DIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMRVRDTGIGMSKSEVEQ 966 Query: 756 AMKPFGQI--------PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 A+KPF QI +++ R EGTGLGLPL KAMV+AN +F I S P +GT++EI+ Sbjct: 967 ALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQGTVVEIV 1026 Query: 808 FP 809 FP Sbjct: 1027 FP 1028 >gi|254708265|ref|ZP_05170093.1| sensory box histidine kinase [Brucella pinnipedialis M163/99/10] gi|261315765|ref|ZP_05954962.1| PAS/PAC sensor signal transduction histidine kinase [Brucella pinnipedialis M163/99/10] gi|261304791|gb|EEY08288.1| PAS/PAC sensor signal transduction histidine kinase [Brucella pinnipedialis M163/99/10] Length = 1035 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 285/782 (36%), Positives = 436/782 (55%), Gaps = 58/782 (7%) Query: 73 TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132 TF FD RF W + G EIS +L +G + ++G R DV+++ D + Sbjct: 260 TFAFDHDAPPARFIWKVGPDGTFSEISPDLAAVVGPNSADIVGRRFSDVANVFGFDTDGS 319 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 I LL ++TW GK LWP+EGT L VP++LAALP+YSR+REF GFRGFGIV + D Sbjct: 320 IAALLLERDTWSGKRLLWPVEGTRLRVPVELAALPVYSRDREFLGFRGFGIVRPAEAEAD 379 Query: 193 PRALGKRLDKKFSHLHEIKKGHSS----VEKEKYDIFSQQ------------------SP 230 P +G L + +K + V ++ S++ +P Sbjct: 380 PEEIGLALAGGIPQNRKPRKEPAETARMVGEDDVLALSEEVANDDQPAAVLPKPPLDITP 439 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKY----PLLTSEESSLPEQEDFHTINLNQYTKK 286 P R +KV SL A + K+ T E L + E + + +K Sbjct: 440 TPGRRDSDKVISLLNSCAQEKVAADQAKFLKEKERATRPEGGLTKTERNAFREIAERLRK 499 Query: 287 QYFGTLQNNSKESFEYLSHRNH-------PSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339 Q L N ES +S + P + + + + P+P ++S Sbjct: 500 Q---GLANTRAESETPVSETSSIEPVEPTPPVKTRSEPIQPDETALLANLPVPVIIHSGD 556 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR-SDRTCIAASA 398 + Y N + L +T Y+S+DDI AGG+ L ++ SD+ + M+ R +D + A Sbjct: 557 AIHYVNQALLDITGYESLDDIRSAGGVDVLFNSE--SDDGETRQSMVLRHADGSEEPVDA 614 Query: 399 RLHTIQWNRENSLAMTFIPFEKAN-QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 L+ I W +L ++ +P A+ P +P E K+ +E V +L +I Sbjct: 615 HLNAIAWRGGRALMLSLMPVTAADLPAPAELPAANDE--------EKQALEAHVEELKTI 666 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 L+ +DG+ +I+ EG I S N + S LFGY ++ K F++ + YL + Sbjct: 667 LDTATDGVVLIDPEGRIRSMNHSASALFGYERDEAEGKFFSMLFAIESQRAAMDYLHGLS 726 Query: 518 SLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 + L + +G + + L + I KLP + + + DI++WK+ + +L++A+ Sbjct: 727 GNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEEELTNAR 786 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ +++FGP+GN RY +Y I+RSGN Sbjct: 787 KEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRDINRSGN 846 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 VL +VNDLLDISKIE+G +++ FE VSL++A+ EAI+L+Q AN +R++IR+SF +N+P Sbjct: 847 HVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSSFQSNLP 906 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST++ N +V++RVRDTG+GM+ E+E+ Sbjct: 907 DIVADSRSIKQVALNLLSNAVRFTALGGQVIVSTSYELNGDVVMRVRDTGIGMSKSEVEQ 966 Query: 756 AMKPFGQI--------PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 A+KPF QI +++ R EGTGLGLPL KAMV+AN +F I S P +GT++EI+ Sbjct: 967 ALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQGTVVEIV 1026 Query: 808 FP 809 FP Sbjct: 1027 FP 1028 >gi|306843027|ref|ZP_07475653.1| PAS domain S-box-containing protein [Brucella sp. BO2] gi|306286784|gb|EFM58327.1| PAS domain S-box-containing protein [Brucella sp. BO2] Length = 1038 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 289/790 (36%), Positives = 438/790 (55%), Gaps = 71/790 (8%) Query: 73 TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132 TF FD RF W + G EIS +L +G + ++G R DV+++ D + Sbjct: 260 TFAFDHDAPPARFIWKVGPDGTFSEISPDLAAVVGPNSADIVGRRFSDVANVFGFDTDGS 319 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 I LL ++TW GK LWP+EGT L VP++LAALP+YSR+REF GFRGFGIV + D Sbjct: 320 IAALLLERDTWSGKRLLWPVEGTRLRVPVELAALPVYSRDREFLGFRGFGIVRPAEAEAD 379 Query: 193 PRALGKRLDKKFSHLHEIKKGHSS----VEKEKYDIFSQQ------------------SP 230 P +G L + +K + V ++ S++ +P Sbjct: 380 PEEIGLALAGGIPQNRKPRKEPAETARMVGEDDVLALSEEVANDDQPAAVLPKPPLDITP 439 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE-------QEDFHTINLNQY 283 P R +KV SL A + K+ L E ++ PE + F I + Sbjct: 440 TPGRRDSDKVISLLNSCAQEKVAADQAKF-LKEKERAARPEGGLTKTERNAFREIA--ER 496 Query: 284 TKKQYFGTLQNNSKESFEYLSH------------RNHPSLSAYFDEGENLTPETVDKCPI 331 +KQ + S+ S R P L DE L P+ Sbjct: 497 LRKQGLANTRAESETPVSETSSIEPVEPTPPVKTRPAPEL-IQPDETALLA-----NLPV 550 Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR-SD 390 P ++S + Y N + L +T Y+S+DDI AGG+ L ++ SD+ + M+ R +D Sbjct: 551 PVIIHSGDAIHYVNQALLDITGYESLDDIRGAGGVDVLFNSE--SDDGETRQSMVLRHAD 608 Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKAN-QFPENMPQNGIEPEDVDTRINKRKMEI 449 + A L+ I W +L ++ +P A+ P +P + E K+ +E Sbjct: 609 GSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAASDDEE-------KQALEA 661 Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 V +L +IL+ +DG+ +I+ EG I S N + S LFGY ++ K F++ + Sbjct: 662 HVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEAEGKFFSMLFAIESQRAA 721 Query: 510 NHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567 YL + + L + +G + + L + I KLP + + + DI++WK+ Sbjct: 722 MDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRT 781 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ +++FGP+GN RY +Y Sbjct: 782 EEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYL 841 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ EAI+L+Q AN +R++IR Sbjct: 842 RDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIR 901 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 +SF +N+P I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST++ N +V++RVRDTG+G Sbjct: 902 SSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMRVRDTGIG 961 Query: 748 MTNYELEKAMKPFGQI--------PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 M+ E+E+A+KPF QI +++ R EGTGLGLPL KAMV+AN +F I S P Sbjct: 962 MSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPG 1021 Query: 800 KGTLIEIIFP 809 +GT++EI+FP Sbjct: 1022 QGTVVEIVFP 1031 >gi|17986700|ref|NP_539334.1| non-motile and phage-resistance protein [Brucella melitensis bv. 1 str. 16M] gi|17982322|gb|AAL51598.1| non-motile and phage-resistance protein [Brucella melitensis bv. 1 str. 16M] Length = 813 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 285/782 (36%), Positives = 436/782 (55%), Gaps = 58/782 (7%) Query: 73 TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132 TF FD RF W + G EIS +L +G + ++G R DV+++ D + Sbjct: 38 TFAFDHDAPPARFIWKVGPDGTFSEISPDLAAVVGPNSADIVGRRFSDVANVFGFDTDGS 97 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 I LL ++TW GK LWP+EGT L VP++LAALP+YSR+REF GFRGFGIV + D Sbjct: 98 IAALLLERDTWSGKRLLWPVEGTRLRVPVELAALPVYSRDREFLGFRGFGIVRPAEAEAD 157 Query: 193 PRALGKRLDKKFSHLHEIKKGHSS----VEKEKYDIFSQQ------------------SP 230 P +G L + +K + V ++ S++ +P Sbjct: 158 PEEIGLALAGGIPQNRKPRKEPAETARMVGEDDVLALSEEVANDDHPAAVLPKPPLDITP 217 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKY----PLLTSEESSLPEQEDFHTINLNQYTKK 286 P R +KV SL A + K+ T E L + E + + +K Sbjct: 218 TPGRRDSDKVISLLNSCAQEKVAANQAKFLKEKERATRPEGGLTKTERNAFREIAERLRK 277 Query: 287 QYFGTLQNNSKESFEYLSHRNH-------PSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339 Q L N ES +S + P + + + + P+P ++S Sbjct: 278 Q---GLANTRAESETPVSETSSIEPVEPTPPVKTRSEPIQPDETALLANLPVPVIIHSGD 334 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR-SDRTCIAASA 398 + Y N + L +T Y+S+DDI AGG+ L ++ SD+ + M+ R +D + A Sbjct: 335 AIHYVNQALLDITGYESLDDIRSAGGVDVLFNSE--SDDGETRQSMVLRHADGSEEPVDA 392 Query: 399 RLHTIQWNRENSLAMTFIPFEKAN-QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 L+ I W +L ++ +P A+ P +P E K+ +E V +L +I Sbjct: 393 HLNAIAWRGGRALMLSLMPVTAADLPAPAELPAANDE--------EKQALEAHVEELKTI 444 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 L+ +DG+ +I+ EG I S N + S LFGY ++ K F++ + YL + Sbjct: 445 LDTATDGVVLIDPEGRIRSMNHSASALFGYERDEAEGKFFSMLFAIESQRAAMDYLHGLS 504 Query: 518 SLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 + L + +G + + L + I KLP + + + DI++WK+ + +L++A+ Sbjct: 505 GNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEEELTNAR 564 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ +++FGP+GN RY +Y I+RSGN Sbjct: 565 KEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRDINRSGN 624 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 VL +VNDLLDISKIE+G +++ FE VSL++A+ EAI+L+Q AN +R++IR+SF +N+P Sbjct: 625 HVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSSFQSNLP 684 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST++ N +V++RVRDTG+GM+ E+E+ Sbjct: 685 DIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMRVRDTGIGMSKSEVEQ 744 Query: 756 AMKPFGQI--------PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 A+KPF QI +++ R EGTGLGLPL KAMV+AN +F I S P +GT++EI+ Sbjct: 745 ALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQGTVVEIV 804 Query: 808 FP 809 FP Sbjct: 805 FP 806 >gi|148559609|ref|YP_001259471.1| sensory box histidine kinase [Brucella ovis ATCC 25840] gi|223635610|sp|A5VRX4|PDHS_BRUO2 RecName: Full=Cell-division control histidine kinase pdhS gi|148370866|gb|ABQ60845.1| sensory box histidine kinase [Brucella ovis ATCC 25840] Length = 1035 Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust. Identities = 285/782 (36%), Positives = 435/782 (55%), Gaps = 58/782 (7%) Query: 73 TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132 TF FD RF W + G EIS +L +G + M+G R DV+++ D + Sbjct: 260 TFAFDHDAPPARFIWKVGPDGTFSEISPDLAAVVGPNSADMVGRRFSDVANVFGFDTDGS 319 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 I LL ++TW GK LWP+EGT L VP++LAALP+YSR+REF GFRGFGIV + D Sbjct: 320 IAALLLERDTWSGKRLLWPVEGTRLRVPVELAALPVYSRDREFLGFRGFGIVRPAEAEAD 379 Query: 193 PRALGKRLDKKFSHLHEIKKGHSS----VEKEKYDIFSQQ------------------SP 230 P +G L + +K + V ++ S++ +P Sbjct: 380 PEEIGLALAGGIPQNRKPRKEPAETARMVGEDDVLALSEEVANDDQPAAVLPKPPLDITP 439 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKY----PLLTSEESSLPEQEDFHTINLNQYTKK 286 P R +KV SL A + K+ T E L + E + + +K Sbjct: 440 TPGRRDSDKVISLLNSCAQEKVAADQAKFLKEKERATRPEGGLTKTERNAFREIAERLRK 499 Query: 287 QYFGTLQNNSKESFEYLSHRNH-------PSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339 Q L N ES +S + P + + + + P+P ++S Sbjct: 500 Q---GLANTRAESETPVSETSSIEPVEPTPPVKTRSEPIQPDETALLANLPVPVIIHSGD 556 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR-SDRTCIAASA 398 + Y N + L +T Y+S+DDI AGG+ L ++ SD+ + M+ R +D + A Sbjct: 557 AIHYVNQALLDITGYESLDDIRSAGGVDVLFNSE--SDDGETRQSMVLRHADGSEEPVDA 614 Query: 399 RLHTIQWNRENSLAMTFIPFEKAN-QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 L+ I W +L ++ +P A+ P +P E K+ +E V +L +I Sbjct: 615 HLNAIAWRGGRALMLSLMPVTAADLPAPAELPAANDE--------EKQALEAHVEELKTI 666 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 L+ +DG+ +I+ EG I S N + S LFGY ++ K F++ + YL + Sbjct: 667 LDTATDGVVLIDPEGRIRSMNHSASALFGYERDEAEGKFFSMLFAIESQRAAMDYLHGLS 726 Query: 518 SLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 + L + +G + + L + I KLP + + + DI++WK+ + +L++A+ Sbjct: 727 GNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEEELTNAR 786 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ +++FGP+GN RY +Y I+RSGN Sbjct: 787 KEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRDINRSGN 846 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 VL +VNDLLDISKIE+G +++ FE VSL++A+ EAI+L+Q AN +R++IR+SF +N+P Sbjct: 847 HVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSSFQSNLP 906 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 I+AD RS+KQ+ALN+LSNA+ FT G Q+I+ST++ N +V++RVRDTG+GM+ E+E+ Sbjct: 907 DIVADSRSIKQVALNLLSNAVRFTAPGRQVIVSTSYELNGDVVMRVRDTGIGMSKSEVEQ 966 Query: 756 AMKPFGQI--------PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 A+KPF QI +++ R EGTGLGLPL KAMV+AN +F I S P +GT++EI+ Sbjct: 967 ALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQGTVVEIV 1026 Query: 808 FP 809 FP Sbjct: 1027 FP 1028 >gi|254719631|ref|ZP_05181442.1| sensory box histidine kinase [Brucella sp. 83/13] gi|265984641|ref|ZP_06097376.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. 83/13] gi|306837734|ref|ZP_07470602.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. NF 2653] gi|264663233|gb|EEZ33494.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. 83/13] gi|306407190|gb|EFM63401.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. NF 2653] Length = 1036 Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust. Identities = 286/785 (36%), Positives = 439/785 (55%), Gaps = 63/785 (8%) Query: 73 TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132 TF FD RF W + G EIS +L +G + ++G R DV+++ D + Sbjct: 260 TFAFDHDAPPARFIWKVGPDGTFSEISPDLAAVVGPNSADIVGRRFSDVANVFGFDTDGS 319 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 I LL ++TW GK LWP+EGT L VP++LAALP+YSR+REF GFRGFGIV + D Sbjct: 320 IAALLLERDTWSGKRLLWPVEGTRLRVPVELAALPVYSRDREFLGFRGFGIVRPAEAEAD 379 Query: 193 PRALGKRLDKKFSHLHEIKKGHSS----VEKEKYDIFSQQ------------------SP 230 P +G L + +K + V ++ S++ +P Sbjct: 380 PEEIGLALAGGIPQNRKPRKEPAETARMVGEDDVLALSEEVANDDQPAAVLPKPPLDITP 439 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE-------QEDFHTINLNQY 283 P R +KV SL A + K+ L E ++ PE + F I + Sbjct: 440 TPGRRDSDKVISLLNSCAQEKVAADQAKF-LKEKERAARPEGGLTKTERNAFREIA--ER 496 Query: 284 TKKQYFGTLQNNSKESFEYLSHRNH-------PSLSAYFDEGENLTPETVDKCPIPFFVY 336 +KQ L N ES +S + P + + + + P+P ++ Sbjct: 497 LRKQ---GLANTRAESETPVSETSSIEPVEPTPPVKTRSEPIQPDETALLANLPVPVIIH 553 Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR-SDRTCIA 395 S + Y N + L +T Y+S+DDI AGG+ L ++ SD+ + M+ R +D + Sbjct: 554 SGDAIHYVNQALLDITGYESLDDIRGAGGVDVLFNSE--SDDGETRQSMVLRHADGSEQP 611 Query: 396 ASARLHTIQWNRENSLAMTFIPFEKAN-QFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 L+ I W +L ++ +P A+ P +P + E K+ +E V +L Sbjct: 612 VDTHLNAIAWRGGRALMLSLMPVAAADLPAPAELPTASDDEE-------KQALEAHVEEL 664 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 +IL+ +DG+ +I+ EG I S N + S LFGY ++ K F++ + YL Sbjct: 665 KTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEAEGKFFSMLFAIESQRAAMDYLH 724 Query: 515 EILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 + + L + +G + + L + I KLP + + + DI++WK+ + +L+ Sbjct: 725 GLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEEELT 784 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 +A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ +++FGP+GN RY +Y I+R Sbjct: 785 NARKEAERTSNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRDINR 844 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SGN VL +VNDLLDISKIE+G +++ FE VSL++A+ EAI+L+Q AN +R++IR+SF + Sbjct: 845 SGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSSFQS 904 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 N+P I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST++ N +V++RVRDTG+GM+ E Sbjct: 905 NLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMRVRDTGIGMSKSE 964 Query: 753 LEKAMKPFGQI--------PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 +E+A+KPF QI +++ R EGTGLGLPL KAMV+AN +F I S P +GT++ Sbjct: 965 VEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQGTVV 1024 Query: 805 EIIFP 809 EI+FP Sbjct: 1025 EIVFP 1029 >gi|294852917|ref|ZP_06793590.1| cell-division control histidine kinase pdhS [Brucella sp. NVSL 07-0026] gi|294821506|gb|EFG38505.1| cell-division control histidine kinase pdhS [Brucella sp. NVSL 07-0026] Length = 1035 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 284/781 (36%), Positives = 435/781 (55%), Gaps = 58/781 (7%) Query: 73 TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132 TF FD RF W + G EIS +L +G + ++G R DV+++ D + Sbjct: 260 TFAFDHDAPPARFIWKVGPDGTFSEISPDLAAVVGPNSADIVGRRFSDVANVFGFDTDGS 319 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 I LL ++TW GK LWP+EGT L VP++LAALP+YSR+REF GFRGFGIV + D Sbjct: 320 IAALLLERDTWSGKRLLWPVEGTRLRVPVELAALPVYSRDREFLGFRGFGIVRPAEAEAD 379 Query: 193 PRALGKRLDKKFSHLHEIKKGHSS----VEKEKYDIFSQQ------------------SP 230 P +G L + +K + V ++ S++ +P Sbjct: 380 PEEIGLALAGGIPQNRKPRKEPAETARMVGEDDVLALSEEVANDDQPAAVLPKPPLDITP 439 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKY----PLLTSEESSLPEQEDFHTINLNQYTKK 286 P R +KV SL A + K+ T E L + E + + +K Sbjct: 440 TPGRRDSDKVISLLNSCAQEKVAADQAKFLKEKERATRPEGGLTKTERNAFREIAERLRK 499 Query: 287 QYFGTLQNNSKESFEYLSHRNH-------PSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339 Q L N ES +S + P + + + + P+P ++S Sbjct: 500 Q---GLANTRAESETPVSETSSIEPVEPTPPVKTRSEPIQPDETALLANLPVPVIIHSGD 556 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR-SDRTCIAASA 398 + Y N + L +T Y+S+DDI AGG+ L ++ SD+ + M+ R +D + A Sbjct: 557 AIHYVNQALLDITGYESLDDIRSAGGVDVLFNSE--SDDGETRQSMVLRHADGSEEPVDA 614 Query: 399 RLHTIQWNRENSLAMTFIPFEKAN-QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 L+ I W +L ++ +P A+ P +P E K+ +E V +L +I Sbjct: 615 HLNAIAWRGGRALMLSLMPVTAADLPAPAELPAANDE--------EKQALEAHVEELKTI 666 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 L+ +DG+ +I+ EG I S N + S LFGY ++ K F++ + YL + Sbjct: 667 LDTATDGVVLIDPEGRIRSMNHSASALFGYERDEAEGKFFSMLFAIESQRAAMDYLHGLS 726 Query: 518 SLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 + L + +G + + L + I KLP + + + DI++WK+ + +L++A+ Sbjct: 727 GNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEEELTNAR 786 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ +++FGP+GN RY +Y I+RSGN Sbjct: 787 KEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRDINRSGN 846 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 VL +VNDLLDISKIE+G +++ FE VSL++A+ EAI+L+Q AN +R++IR+SF +N+P Sbjct: 847 HVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSSFQSNLP 906 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST++ N +V++RVRDTG+GM+ E+E+ Sbjct: 907 DIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMRVRDTGIGMSKSEVEQ 966 Query: 756 AMKPFGQI--------PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 A+KPF QI +++ R EGTGLGLPL KAMV+AN +F I S P +GT++EI+ Sbjct: 967 ALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQGTVVEIV 1026 Query: 808 F 808 F Sbjct: 1027 F 1027 >gi|161619546|ref|YP_001593433.1| PAS domain-containing protein [Brucella canis ATCC 23365] gi|254704851|ref|ZP_05166679.1| PAS domain-containing protein [Brucella suis bv. 3 str. 686] gi|260565909|ref|ZP_05836379.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40] gi|261755546|ref|ZP_05999255.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis bv. 3 str. 686] gi|223635609|sp|A9M715|PDHS_BRUC2 RecName: Full=Cell-division control histidine kinase pdhS gi|161336357|gb|ABX62662.1| PAS domain S-box [Brucella canis ATCC 23365] gi|260155427|gb|EEW90507.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40] gi|261745299|gb|EEY33225.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis bv. 3 str. 686] Length = 1035 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 284/782 (36%), Positives = 435/782 (55%), Gaps = 58/782 (7%) Query: 73 TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132 TF FD RF W + G EIS +L +G + ++G R DV+++ + Sbjct: 260 TFAFDHDAPPARFIWKVGPDGTFSEISPDLAAVVGPNSADIVGRRFSDVANVFGFYTDGS 319 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 I LL ++TW GK LWP+EGT L VP++LAALP+YSR+REF GFRGFGIV + D Sbjct: 320 IAALLLERDTWSGKRLLWPVEGTRLRVPVELAALPVYSRDREFLGFRGFGIVRPAEAEAD 379 Query: 193 PRALGKRLDKKFSHLHEIKKGHSS----VEKEKYDIFSQQ------------------SP 230 P +G L + +K + V ++ S++ +P Sbjct: 380 PEEIGLALAGGIPQNRKPRKEPAETARMVGEDDVLALSEEVANDDQPAAVLPKPPLDITP 439 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKY----PLLTSEESSLPEQEDFHTINLNQYTKK 286 P R +KV SL A + K+ T E L + E + + +K Sbjct: 440 TPGRRDSDKVISLLNSCAQEKVAADQAKFLKEKERATRPEGGLTKTERNAFREIAERLRK 499 Query: 287 QYFGTLQNNSKESFEYLSHRNH-------PSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339 Q L N ES +S + P + + + + P+P ++S Sbjct: 500 Q---GLANTRAESETPVSETSSIEPVEPTPPVKTRSEPIQPDETALLANLPVPVIIHSGD 556 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR-SDRTCIAASA 398 + Y N + L +T Y+S+DDI AGG+ L ++ SD+ + M+ R +D + A Sbjct: 557 AIHYVNQALLDITGYESLDDIRSAGGVDVLFNSE--SDDGETRQSMVLRHADGSEEPVDA 614 Query: 399 RLHTIQWNRENSLAMTFIPFEKAN-QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 L+ I W +L ++ +P A+ P +P E K+ +E V +L +I Sbjct: 615 HLNAIAWRGGRALMLSLMPVTAADLPAPAELPAANDE--------EKQALEAHVEELKTI 666 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 L+ +DG+ +I+ EG I S N + S LFGY ++ K F++ + YL + Sbjct: 667 LDTATDGVVLIDPEGRIRSMNHSASALFGYERDEAEGKFFSMLFAIESQRAAMDYLHGLS 726 Query: 518 SLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 + L + +G + + L + I KLP + + + DI++WK+ + +L++A+ Sbjct: 727 GNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEEELTNAR 786 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ +++FGP+GN RY +Y I+RSGN Sbjct: 787 KEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRDINRSGN 846 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 VL +VNDLLDISKIE+G +++ FE VSL++A+ EAI+L+Q AN +R++IR+SF +N+P Sbjct: 847 YVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSSFQSNLP 906 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST++ N +V++RVRDTG+GM+ E+E+ Sbjct: 907 DIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMRVRDTGIGMSKSEVEQ 966 Query: 756 AMKPFGQI--------PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 A+KPF QI +++ R EGTGLGLPL KAMV+AN +F I S P +GT++EI+ Sbjct: 967 ALKPFRQINALEGRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQGTVVEIV 1026 Query: 808 FP 809 FP Sbjct: 1027 FP 1028 >gi|23502469|ref|NP_698596.1| sensory box histidine kinase [Brucella suis 1330] gi|81752215|sp|Q8FZ86|PDHS_BRUSU RecName: Full=Cell-division control histidine kinase pdhS gi|23348461|gb|AAN30511.1| sensory box histidine kinase [Brucella suis 1330] Length = 1035 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 284/782 (36%), Positives = 435/782 (55%), Gaps = 58/782 (7%) Query: 73 TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132 TF FD RF W + G EIS +L +G + ++G R DV+++ + Sbjct: 260 TFAFDHDAPPARFIWKVGPDGTFSEISPDLAAVVGPNSADIVGRRFSDVANVFGFYTDGS 319 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 I LL ++TW GK LWP+EGT L VP++LAALP+YSR+REF GFRGFGIV + D Sbjct: 320 IAALLLERDTWSGKRLLWPVEGTRLRVPVELAALPVYSRDREFLGFRGFGIVRPAEAEAD 379 Query: 193 PRALGKRLDKKFSHLHEIKKGHSS----VEKEKYDIFSQQ------------------SP 230 P +G L + +K + V ++ S++ +P Sbjct: 380 PEEIGLALAGGIPQNRKPRKEPAETARMVGEDDVLALSEEVANDDQPAAVLPKPPLDITP 439 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKY----PLLTSEESSLPEQEDFHTINLNQYTKK 286 P R +KV SL A + K+ T E L + E + + +K Sbjct: 440 TPGRRDSDKVISLLNSCAQEKVAADQAKFLKEKERATRPEGGLTKTERNAFREIAERLRK 499 Query: 287 QYFGTLQNNSKESFEYLSHRNH-------PSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339 Q L N ES +S + P + + + + P+P ++S Sbjct: 500 Q---GLANTRAESETPVSETSSIEPVEPTPPVKTRSEPIQPDETALLANLPVPVIIHSGD 556 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR-SDRTCIAASA 398 + Y N + L +T Y+S+DDI AGG+ L ++ SD+ + M+ R +D + A Sbjct: 557 AIHYVNQALLDITGYESLDDIRSAGGVDVLFNSE--SDDGETRQSMVLRHADGSEEPVDA 614 Query: 399 RLHTIQWNRENSLAMTFIPFEKAN-QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 L+ I W +L ++ +P A+ P +P E K+ +E V +L +I Sbjct: 615 HLNAIAWRGGRALMLSLMPVTAADLPAPAELPAANDE--------EKQALEAHVEELKTI 666 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 L+ +DG+ +I+ EG I S N + S LFGY ++ K F++ + YL + Sbjct: 667 LDTATDGVVLIDPEGRIRSMNHSASALFGYERDEAEGKFFSMLFAIESQRAAMDYLHGLS 726 Query: 518 SLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 + L + +G + + L + I KLP + + + DI++WK+ + +L++A+ Sbjct: 727 GNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEEELTNAR 786 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ +++FGP+GN RY +Y I+RSGN Sbjct: 787 KEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRDINRSGN 846 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 VL +VNDLLDISKIE+G +++ FE VSL++A+ EAI+L+Q AN +R++IR+SF +N+P Sbjct: 847 HVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSSFQSNLP 906 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST++ N +V++RVRDTG+GM+ E+E+ Sbjct: 907 DIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMRVRDTGIGMSKSEVEQ 966 Query: 756 AMKPFGQI--------PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 A+KPF QI +++ R EGTGLGLPL KAMV+AN +F I S P +GT++EI+ Sbjct: 967 ALKPFRQINALEGRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQGTVVEIV 1026 Query: 808 FP 809 FP Sbjct: 1027 FP 1028 >gi|163843854|ref|YP_001628258.1| PAS domain-containing protein [Brucella suis ATCC 23445] gi|223635611|sp|B0CI82|PDHS_BRUSI RecName: Full=Cell-division control histidine kinase pdhS gi|163674577|gb|ABY38688.1| PAS domain S-box [Brucella suis ATCC 23445] Length = 1035 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 283/782 (36%), Positives = 434/782 (55%), Gaps = 58/782 (7%) Query: 73 TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132 TF FD RF W + G EIS +L +G + ++G R DV+++ + Sbjct: 260 TFAFDHDAPPARFIWKVGPDGTFSEISPDLAAVVGPNSADIVGRRFSDVANVFGFYTDGS 319 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 I LL ++TW GK LWP+EGT L VP++LAALP+YSR+REF GFRGFGIV + D Sbjct: 320 IAALLLERDTWSGKRLLWPVEGTRLRVPVELAALPVYSRDREFLGFRGFGIVRPAEAEAD 379 Query: 193 PRALGKRLDKKFSHLHEIKKGHSS----VEKEKYDIFSQQ------------------SP 230 P +G L + +K + V ++ S++ +P Sbjct: 380 PEEIGLALAGGIPQNRKPRKEPAETARMVGEDDVLALSEEVANDDQPAAVLPKPPLDITP 439 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKY----PLLTSEESSLPEQEDFHTINLNQYTKK 286 P R +KV SL A + K+ T E L + E + + +K Sbjct: 440 TPGRRDSDKVISLLNSCAQEKVAADQAKFLKEKERATRPEGGLTKTERNAFREIAERLRK 499 Query: 287 QYFGTLQNNSKESFEYLSHRNH-------PSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339 Q L N ES +S + P + + + + P+P ++S Sbjct: 500 Q---GLANTRAESETPVSETSSIEPVEPTPPVKTRSEPIQPDETALLANLPVPVIIHSGD 556 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR-SDRTCIAASA 398 + Y N + L +T Y+S+DDI AGG+ L ++ SD+ + M+ R +D + Sbjct: 557 AIHYVNQALLDITGYESLDDIRSAGGVDVLFNSE--SDDGETRQSMVLRHADGSEEPVDT 614 Query: 399 RLHTIQWNRENSLAMTFIPFEKAN-QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 L+ I W +L ++ +P A+ P +P E K+ +E V +L +I Sbjct: 615 HLNAIAWRGGRALMLSLMPVTAADLPAPAELPAANDE--------EKQALEAHVEELKTI 666 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 L+ +DG+ +I+ EG I S N + S LFGY ++ K F++ + YL + Sbjct: 667 LDTATDGVVLIDPEGRIRSMNHSASALFGYERDEAEGKFFSMLFAIESQRAAMDYLHGLS 726 Query: 518 SLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 + L + +G + + L + I KLP + + + DI++WK+ + +L++A+ Sbjct: 727 GNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQWKRTEEELTNAR 786 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ +++FGP+GN RY +Y I+RSGN Sbjct: 787 KEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGNDRYRDYLRDINRSGN 846 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 VL +VNDLLDISKIE+G +++ FE VSL++A+ EAI+L+Q AN +R++IR+SF +N+P Sbjct: 847 HVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQANRERVIIRSSFQSNLP 906 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST++ N +V++RVRDTG+GM+ E+E+ Sbjct: 907 DIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMRVRDTGIGMSKSEVEQ 966 Query: 756 AMKPFGQI--------PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 A+KPF QI +++ R EGTGLGLPL KAMV+AN +F I S P +GT++EI+ Sbjct: 967 ALKPFRQINALEGRKAESAKDWRNEGTGLGLPLTKAMVEANRAQFAIDSNPGQGTVVEIV 1026 Query: 808 FP 809 FP Sbjct: 1027 FP 1028 >gi|327192167|gb|EGE59140.1| putative two-component sensor histidine kinase protein [Rhizobium etli CNPAF512] Length = 1262 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 229/495 (46%), Positives = 327/495 (66%), Gaps = 6/495 (1%) Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + L+ TVD+ P+ ++ L +ANP F+ LT Y S+D + GG+ LL L +N Sbjct: 763 DGLSAGTVDQLPVAVLIHVGDALLHANPEFMRLTGYSSLDALRDVGGIEALLQRRDLEEN 822 Query: 379 NA-IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 A +ML ++D T +ARL +++W N+L + +P + ++ PE Sbjct: 823 AAGSGTMMLVKADDTLTPVTARLQSVRWEDANALMLALMPVAGKEEARTEAGRSEARPER 882 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + ++ K +++EV +L SILE +DG+ +I EG I S NR+ S LF Y ++ KPF Sbjct: 883 MVEKVAK--LQVEVEELRSILETATDGVVVIGIEGDIRSMNRSASALFNYDEQETRGKPF 940 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 + + + YL + + L + +G + L + + +L S+ Y Sbjct: 941 VMLFAHESQKAVLDYLHGLSGHGVASVLNDGREVIGREAAGGFVPLFMTMGRLTSSNGYC 1000 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + DI++WK+ +++L +AK AE ++HK+DFLARVSHEIRTPL AIIGFS+++ +RF Sbjct: 1001 AVIRDITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERF 1060 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GP+G+PRYIEYAN I RSG VLDIVNDLLDISKIE+G+M+L F V L+EAVSEA++LV Sbjct: 1061 GPIGHPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALV 1120 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 Q AN +R++IRT+ ++ +P ++ADLRS+KQIALNILSNAI FTPSGGQI++ST++ +N Sbjct: 1121 QPQANGQRVIIRTALSHAVPDVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANG 1180 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ-QIRGEGTGLGLPLAKAMVDANMGKFYI 794 V+LRVRDTGVGMT EL++AMKPF Q+ ++Q + RG+GTGLGLPL KAMVDAN F I Sbjct: 1181 SVVLRVRDTGVGMTRSELDQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANRATFSI 1240 Query: 795 FSTPAKGTLIEIIFP 809 S P +GTL+EI FP Sbjct: 1241 NSAPNEGTLVEITFP 1255 Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 62/129 (48%), Positives = 86/129 (66%) Query: 74 FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133 FVF P R RF W IDA G E+S E + +G +A +IG D++ + ++DP+ + Sbjct: 405 FVFRPNSRATRFVWKIDAEGRFNEVSHEFAEAVGPHASAIIGSAFSDIAALFNLDPDGKL 464 Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 + L R++TW GKT LWP+EGT+L VP+DLAALP Y+RNR+F GFRGFG+V ++ DP Sbjct: 465 SEALARRDTWSGKTILWPVEGTSLVVPVDLAALPTYTRNRDFDGFRGFGVVRLSDAQEDP 524 Query: 194 RALGKRLDK 202 ALG L + Sbjct: 525 LALGLTLGQ 533 >gi|190890429|ref|YP_001976971.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652] gi|190695708|gb|ACE89793.1| probable two-component sensor histidine kinase protein [Rhizobium etli CIAT 652] Length = 1257 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 229/495 (46%), Positives = 327/495 (66%), Gaps = 6/495 (1%) Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + L+ TVD+ P+ ++ L +ANP F+ LT Y S+D + GG+ LL L +N Sbjct: 758 DGLSAGTVDQLPVAVLIHVGDALMHANPEFMRLTGYSSLDALRDVGGIEALLQRRDLEEN 817 Query: 379 NA-IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 A +ML ++D T +ARL +++W N+L + +P + ++ PE Sbjct: 818 AAGSGTMMLVKADDTLTPVTARLQSVRWEDANALMLALMPVAGKEEARTEAGRSEARPER 877 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + ++ K +++EV +L SILE +DG+ +I EG I S NR+ S LF Y ++ KPF Sbjct: 878 MVEKVAK--LQVEVEELRSILETATDGVVVIGIEGDIRSMNRSASALFNYDEQETRGKPF 935 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 + + + YL + + L + +G + L + + +L S+ Y Sbjct: 936 VMLFAHESQKAVLDYLHGLSGHGVASVLNDGREVIGREAAGGFVPLFMTMGRLTSSNGYC 995 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + DI++WK+ +++L +AK AE ++HK+DFLARVSHEIRTPL AIIGFS+++ +RF Sbjct: 996 AVIRDITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERF 1055 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GP+G+PRYIEYAN I RSG VLDIVNDLLDISKIE+G+M+L F V L+EAVSEA++LV Sbjct: 1056 GPIGHPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALV 1115 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 Q AN +R++IRT+ ++ +P ++ADLRS+KQIALNILSNAI FTPSGGQI++ST++ +N Sbjct: 1116 QPQANGQRVIIRTALSHAVPDVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANG 1175 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ-QIRGEGTGLGLPLAKAMVDANMGKFYI 794 V+LRVRDTGVGMT EL++AMKPF Q+ ++Q + RG+GTGLGLPL KAMVDAN F I Sbjct: 1176 SVVLRVRDTGVGMTRSELDQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANRATFSI 1235 Query: 795 FSTPAKGTLIEIIFP 809 S P +GTL+EI FP Sbjct: 1236 NSAPNEGTLVEITFP 1250 Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 62/129 (48%), Positives = 87/129 (67%) Query: 74 FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133 FVF P R RF W IDA G E+S E + +G +A +IG D++ + ++DP+ + Sbjct: 401 FVFRPNSRATRFVWKIDAEGRFNEVSHEFAEAVGPHASAIIGSAFADIASLFNLDPDGKL 460 Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 ++L R++TW GKT LWP+EGT+L VP+DLAALP Y+RNR+F GFRGFG+V ++ DP Sbjct: 461 SEVLARRDTWSGKTILWPVEGTSLVVPVDLAALPTYTRNRDFDGFRGFGVVRLSDAQEDP 520 Query: 194 RALGKRLDK 202 ALG L + Sbjct: 521 LALGLTLGQ 529 >gi|86356371|ref|YP_468263.1| putative two-component sensor histidine kinase protein [Rhizobium etli CFN 42] gi|86280473|gb|ABC89536.1| putative two-component sensor histidine kinase protein [Rhizobium etli CFN 42] Length = 1266 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 228/495 (46%), Positives = 328/495 (66%), Gaps = 6/495 (1%) Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + L+ TVD+ P+ ++ L +ANP F+ LT Y S+D + GG+ LL +L + Sbjct: 767 DGLSAGTVDQLPVAVLIHVGDALIHANPEFMRLTGYHSLDALREVGGIEALLQRRELEEK 826 Query: 379 NA-IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 A +ML ++D T +ARL +++W N+L + +P E + ++ PE Sbjct: 827 AAGSGTMMLVKADDTLTPVTARLQSVRWEDANALMLALMPVEGKEDGRGDSNRSEARPER 886 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + ++ K +++EV +L SILE +DG+ +I EG I S NR+ S LF Y ++ KPF Sbjct: 887 MVEKVAK--LQVEVEELRSILETATDGVVVIGTEGDIRSMNRSASALFNYDEQETRGKPF 944 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 + + + YL + + L + +G + L + + +L S+ Y Sbjct: 945 VMLFAHESQKAVLDYLNGLAGHGVASVLNDGREVIGREAGGGFVPLFMTMGRLTSSNGYC 1004 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + DI++WK+ +++L +AK AE ++HK+DFLARVSHEIRTPL AIIGFS+++ +RF Sbjct: 1005 AVIRDITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERF 1064 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GP+G+PRYIEYAN I RSG VLDIVNDLLDISKIE+G+M+L F V L+EAVSEA++LV Sbjct: 1065 GPIGHPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALV 1124 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 Q AN +R++IRT+ ++++P ++ADLRS+KQIALNILSNAI FTPSGGQI++ST++ +N Sbjct: 1125 QPQANGQRVIIRTALSHSVPEVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANG 1184 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ-QIRGEGTGLGLPLAKAMVDANMGKFYI 794 V+LRVRDTG+GMT EL+ AMKPF Q+ ++Q + RG+GTGLGLPL KAMVDAN F I Sbjct: 1185 SVVLRVRDTGIGMTRAELDHAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANRAIFSI 1244 Query: 795 FSTPAKGTLIEIIFP 809 S P +GTL+EI FP Sbjct: 1245 NSAPNEGTLVEITFP 1259 Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 65/133 (48%), Positives = 87/133 (65%) Query: 68 LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127 L E FVF P R RF W IDA G E+S E + +G +A +IG D++ + ++ Sbjct: 394 LAPEPGFVFRPNSRATRFVWKIDAEGRFNEVSHEFAEAVGPHASAIIGSAFSDIAALFNL 453 Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 DP+ I + L R++TW GKT LWP+EGT+L VP+DLAALP Y+RNR+F GFRGFG+V ++ Sbjct: 454 DPDGKISEALARRDTWSGKTILWPVEGTSLVVPVDLAALPTYTRNRDFDGFRGFGVVRLS 513 Query: 188 RVDNDPRALGKRL 200 DP ALG L Sbjct: 514 DAQEDPLALGLTL 526 >gi|241203167|ref|YP_002974263.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857057|gb|ACS54724.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1276 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 232/505 (45%), Positives = 329/505 (65%), Gaps = 22/505 (4%) Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + L+ TVD+ P+ ++ L +ANP F+ LT Y S+D + GG+ LL +L + Sbjct: 773 DGLSVGTVDQLPVAVLIHIGDALIHANPEFMRLTGYGSLDALREVGGIEGLLQRRELEEK 832 Query: 379 NA-IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE-------KANQF---PEN 427 A +ML ++D T +ARL +++W N+L + +P E AN+F E+ Sbjct: 833 AAGSGTMMLVKADDTLAPVTARLQSVRWEDANALMLALMPVEGKEDGRGDANRFDGRSED 892 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 P+ +E K+++EV +L SILE +DG+ +I EG I S NR+ S LF Y Sbjct: 893 RPERMVE--------KVAKLQVEVEELRSILETATDGVVVIGTEGDIRSMNRSASALFNY 944 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIII 545 ++ KPF + + + YL + + L + +G + L + + Sbjct: 945 DEQETRGKPFVMLFAHESQKAVIDYLNGLSGHGVASVLNDGREVIGREAAGGFVPLFMTM 1004 Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 +L S+ Y + DI++WK+ +++L +AK AE ++HK+DFLARVSHEIRTPL AIIG Sbjct: 1005 GQLTSSNGYCAVIRDITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIG 1064 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FS+++ +RFGP+G+PRYIEYAN I RSG VLDIVNDLLDISKIE+G+M+L F V L+ Sbjct: 1065 FSDMMAGERFGPIGHPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLN 1124 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 EAVSEA++LVQ AN +R++IRT+ + +P ++ADLRS+KQIALNILSNAI FTPSGGQI Sbjct: 1125 EAVSEAVALVQPQANGQRVIIRTALSQAVPEVVADLRSIKQIALNILSNAIRFTPSGGQI 1184 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ-QIRGEGTGLGLPLAKAM 784 ++ST++ +N V+LRVRDTG+GMT EL++AMKPF Q+ ++Q + RG+GTGLGLPL KAM Sbjct: 1185 VVSTSYEANGSVVLRVRDTGIGMTRSELDQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAM 1244 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809 VDAN F I S P +GTL+EI FP Sbjct: 1245 VDANRATFTINSAPNEGTLVEITFP 1269 Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 70/163 (42%), Positives = 97/163 (59%), Gaps = 4/163 (2%) Query: 42 ENPCHDS----FEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKE 97 E P D+ E++ V L++E+ FVF P R RF W IDA G E Sbjct: 356 ETPIEDAPEAVHEETAIATPVVPDVPPAPQLEAESGFVFRPNSRATRFVWKIDAEGRFNE 415 Query: 98 ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNL 157 +S E +G +A +IG DV+ + ++DP+ + + L R++TW GKT LWP+EGT+L Sbjct: 416 VSHEFAAAVGPHASDIIGSAFGDVAALFNLDPDGKLSEALARRDTWSGKTILWPVEGTSL 475 Query: 158 YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 VP+DLAALP Y+RNR+F GFRGFG+V ++ DP ALG L Sbjct: 476 VVPVDLAALPTYTRNRDFDGFRGFGVVRLSDAQEDPLALGLTL 518 >gi|209547989|ref|YP_002279906.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533745|gb|ACI53680.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 1296 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 227/497 (45%), Positives = 330/497 (66%), Gaps = 6/497 (1%) Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + L+ TVD+ P+ ++ L +ANP F+ LT Y S+D + GG+ LL +L + Sbjct: 793 DGLSLGTVDQLPVAVLIHVGDALLHANPEFMRLTGYTSLDALREVGGIEALLQRRELEEK 852 Query: 379 NA-IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 A +ML ++D + + +ARL +++W N+L + +P E + + ++ E Sbjct: 853 AAGSGTMMLVKADDSLVPVTARLQSVRWEDANALMLALMPVEGKEEGRSDAGRSEGRTEA 912 Query: 438 VDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 R+ ++ K+++EV +L SILE +DG+ +I EG I S NR+ S LF Y ++ K Sbjct: 913 RPERMVEKVAKLQVEVEELRSILETATDGVVVIGTEGDIRSMNRSASALFNYDEQETRGK 972 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC 553 PF + + + YL + + L + +G + L + + +L S+ Sbjct: 973 PFVMLFAHESQKAVLDYLHGLSGHGVASVLNDGREVIGREAAGGFVPLFMTMGQLTSSNG 1032 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y + DI++WK+ +++L +AK AE ++HK+DFLARVSHEIRTPL AIIGFS+++ + Sbjct: 1033 YCAVIRDITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGE 1092 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 RFGP+G+PRYIEYAN I RSG VLDIVNDLLDISKIE+G+M+L F V L+EAVSEA++ Sbjct: 1093 RFGPIGHPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVA 1152 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 LVQ AN +R++IRT+ ++ +P ++ADLRS+KQIALNILSNAI FTPSGGQI++ST++ + Sbjct: 1153 LVQPQANGQRVIIRTALSHAVPEVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEA 1212 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ-QIRGEGTGLGLPLAKAMVDANMGKF 792 N V+LRVRDTG+GMT EL++AMKPF Q+ ++Q + RG+GTGLGLPL KAMVDAN F Sbjct: 1213 NGSVVLRVRDTGIGMTRSELDQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANRAVF 1272 Query: 793 YIFSTPAKGTLIEIIFP 809 I S P +GTL+EI FP Sbjct: 1273 SINSAPNEGTLVEITFP 1289 Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 61/127 (48%), Positives = 85/127 (66%) Query: 74 FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133 F+F P R RF W IDA G E+S E + +G +A ++IG DV+ + ++D + + Sbjct: 401 FIFRPNSRATRFVWKIDAEGRFNEVSHEFAEAVGPHASEIIGSAFGDVAALFNLDSDGKL 460 Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 + L R++TW GKT LWP+EGT+L VP+DLAALP Y+RNR+F GFRGFG+V ++ DP Sbjct: 461 AEALARRDTWSGKTILWPVEGTSLVVPVDLAALPTYTRNRDFDGFRGFGVVRLSDAQEDP 520 Query: 194 RALGKRL 200 ALG L Sbjct: 521 LALGLTL 527 >gi|15887959|ref|NP_353640.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] gi|15155563|gb|AAK86425.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] Length = 1275 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 233/495 (47%), Positives = 324/495 (65%), Gaps = 10/495 (2%) Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS---D 377 LT ET+D+ P+ V++ L +ANP FL LT Y S+ ++E GGL LL +L D Sbjct: 778 LTAETLDQMPVALLVHAGDRLIHANPDFLRLTGYTSLTELEEVGGLEALLQRQELENMPD 837 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 N V+ +D I ARL +I+W +L ++ +P E+ + M N E+ Sbjct: 838 NEGGMVVVSAEND--IIPVKARLQSIRWEETKALMLSLVPLEE--KPAAVMAANENTAEN 893 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + N ++ E+ +L SILE +DG+ ++ +G I S NR+ S LF Y +I KPF Sbjct: 894 AEAGSNLSLLQGEMEELHSILETATDGVVLLGDDGEIRSLNRSASALFNYDNGEIAGKPF 953 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 + + YL+ + + + L + +G L L + I +L S Y Sbjct: 954 VTLFAHESQRAVLDYLSGLANNGVASVLNDGREVIGREASGGFLPLFMTIGRLKSSHGYC 1013 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + DI++WK+ + +L +AK+ AE ++HK+DFLARVSHEIRTPL AIIGFS+++ +RF Sbjct: 1014 AVIRDITQWKRTEEELRNAKRAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMATERF 1073 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GP+GNPRY+EYAN I RSG VLDIVNDLLDISKIE+G+M++ F V L+E V+EA+SLV Sbjct: 1074 GPIGNPRYVEYANDIGRSGRHVLDIVNDLLDISKIEAGQMDVDFIAVPLNETVAEAVSLV 1133 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 Q AN +R++IRT+ A ++P+I+ADLRS+KQI LNILSNAI FTPSGGQI++ST + +N Sbjct: 1134 QPQANNQRVIIRTALAQSVPQIVADLRSIKQIVLNILSNAIRFTPSGGQIVVSTAYEANG 1193 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNS-QQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V LR+RDTG+GMT ELE+AMKPF Q+ +S +++RG+GTGLGLPL KAMVDAN F I Sbjct: 1194 SVSLRIRDTGIGMTRAELEQAMKPFRQVASSGKRVRGDGTGLGLPLTKAMVDANRANFSI 1253 Query: 795 FSTPAKGTLIEIIFP 809 STP +GTL+EI FP Sbjct: 1254 TSTPNEGTLVEITFP 1268 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 63/124 (50%), Positives = 79/124 (63%) Query: 74 FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133 FVF+ R RF W IDA G IS E + +G A + GM DV+ + ++DP+ I Sbjct: 421 FVFNAGARASRFVWKIDAEGRFSSISHEFAEAVGAKAAAVEGMGFADVAALFNLDPDGKI 480 Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 +LL R++TW GKT WP+EGT+L VPIDLAALP Y+R REF GFRGFGIV + DP Sbjct: 481 RELLGRRDTWSGKTIYWPVEGTSLMVPIDLAALPTYTRAREFDGFRGFGIVRLADATEDP 540 Query: 194 RALG 197 A G Sbjct: 541 HATG 544 >gi|222084929|ref|YP_002543458.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] gi|221722377|gb|ACM25533.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] Length = 1190 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 225/496 (45%), Positives = 329/496 (66%), Gaps = 10/496 (2%) Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 L+ E VD+ P+ +++ L + NP FL LT Y+S+ D++ GGL LL L + Sbjct: 692 GLSDEIVDQLPLAILIHAGDRLIHGNPEFLRLTGYESLADLDHVGGLDALLQRHDL-EGK 750 Query: 380 AIKP--VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN--QFPENMPQNGIEP 435 +P +M+ R+D T + +ARL +I+W +L + +P EK++ E +P+ P Sbjct: 751 TEQPGTMMVVRADDTLVPVTARLQSIRWEDGTALMLALMPLEKSDVSTPAEPVPEEA-RP 809 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 E + ++ K ++EIE +Q S LE +DG+ II ++G I S NR+ S LF + ++ K Sbjct: 810 ERMIEKLAKLQVEIEELQ--STLETATDGVVIIGQDGDIRSMNRSASALFNFDDQETRGK 867 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC 553 PF + + + YL+ + + L + +G + L + + +L S+ Sbjct: 868 PFVMLFAHESQKAVLDYLSGLSGHGVASVLNDGREVMGREASGGFVPLFMTMGRLNSSNG 927 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y + DI++WK+ + +L +AK+ AE ++HK+DFLARVSHEIRTPL AIIGFS+++ + Sbjct: 928 YCAVIRDITQWKRTEEELRNAKRAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGE 987 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 RFGP+G+ RY+EYA I RSG VLDIVNDLLDISKIE+G+M+L F V L+EA++EA+S Sbjct: 988 RFGPIGHSRYVEYATDIGRSGRHVLDIVNDLLDISKIEAGEMDLEFASVGLNEAIAEAVS 1047 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 LVQ AN +R++IRT+ + +P ++ADLRS+KQIALNILSNAI FTPSGGQI++ST++ Sbjct: 1048 LVQPQANSQRVIIRTALSQAVPNVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEG 1107 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 N V++R+RDTGVGMT ELE+AMKPF Q+ + + RG+GTGLGLPL KAMVDAN F Sbjct: 1108 NGSVVMRIRDTGVGMTRSELEQAMKPFRQVSTNSRKRGDGTGLGLPLTKAMVDANRATFA 1167 Query: 794 IFSTPAKGTLIEIIFP 809 I S+P +GTL+E+ FP Sbjct: 1168 INSSPNEGTLVEVTFP 1183 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 58/127 (45%), Positives = 80/127 (62%) Query: 74 FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133 F F R RF W IDA G E+S E + +G +A K+ G DV+ ++DP+ I Sbjct: 380 FTFKRNGRATRFVWKIDAEGRFSEVSREFAEAVGPHAAKVTGTAFTDVAAHFNLDPDGKI 439 Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 +LL R++TW G+T WP+E T+L VP+DLAALP Y+R+R+F GFRGFG+V ++ DP Sbjct: 440 AELLARRDTWSGRTIYWPVENTSLIVPVDLAALPTYTRSRDFDGFRGFGVVRLSDAIEDP 499 Query: 194 RALGKRL 200 LG L Sbjct: 500 MKLGLTL 506 >gi|116250541|ref|YP_766379.1| two-component regulator sensor histidine kinase protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255189|emb|CAK06263.1| putative two-component regulator sensor histidine kinase protein [Rhizobium leguminosarum bv. viciae 3841] Length = 1310 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 229/505 (45%), Positives = 328/505 (64%), Gaps = 14/505 (2%) Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + L+ TVD+ P+ ++ L +ANP F+ LT Y S++ + GG+ LL +L + Sbjct: 799 DGLSVGTVDQLPVAVLIHIGDALIHANPEFMRLTGYGSLEALREVGGIEALLQRRELEEK 858 Query: 379 NA-IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE-KANQFPENMPQNGIEPE 436 A +ML ++D T +ARL +++W N+L + +P E K + + +G Sbjct: 859 AAGSGTMMLVKADDTLAPVTARLQSVRWEDANALMLALMPVEGKEDGRSDANRTDGRSEG 918 Query: 437 DVDTRINKR---------KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + R R K+++EV +L SILE +DG+ +I EG I S NR+ S LF Y Sbjct: 919 RSEGRSEGRPERMVEKVAKLQVEVEELRSILETATDGVVVIGTEGDIRSMNRSASALFNY 978 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIII 545 ++ KPF + + + YL + + L + +G + L + + Sbjct: 979 DEQETRGKPFVMLFAHESQKAVIDYLNGLSDHGVASVLNDGREVIGREAAGGFVPLFMTM 1038 Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 +L S+ Y + DI++WK+ +++L +AK AE ++HK+DFLARVSHEIRTPL AIIG Sbjct: 1039 GQLTSSNGYCAVIRDITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIG 1098 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FS+++ +RFGP+G+PRYIEYAN I RSG VLDIVNDLLDISKIE+G+M+L F V L+ Sbjct: 1099 FSDMMAGERFGPIGHPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLN 1158 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 EAVSEA++LVQ AN +R++IRT+ ++ +P ++ADLRS+KQIALNILSNAI FTPSGGQI Sbjct: 1159 EAVSEAVALVQPQANSQRVIIRTALSHAVPEVVADLRSIKQIALNILSNAIRFTPSGGQI 1218 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ-QIRGEGTGLGLPLAKAM 784 ++ST++ +N V+LRVRDTG+GMT EL++AMKPF Q+ ++Q + RG+GTGLGLPL KAM Sbjct: 1219 VVSTSYEANGSVVLRVRDTGIGMTRSELDQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAM 1278 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809 VDAN F I S P +GTL+EI FP Sbjct: 1279 VDANRATFSINSAPNEGTLVEITFP 1303 Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 65/133 (48%), Positives = 88/133 (66%) Query: 68 LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127 L +E FVF P R RF W IDA G E+S E + +G +A +IG DV+ + ++ Sbjct: 403 LAAEPGFVFRPNSRATRFVWKIDAEGRFTEVSHEFAEAVGPHASDIIGSPFGDVAALFNL 462 Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 DP+ + + L R++TW GKT LWP+EGT+L VP+DLAALP Y+RNR+F GFRGFG+V ++ Sbjct: 463 DPDGKLSEALARRDTWSGKTILWPVEGTSLVVPVDLAALPTYTRNRDFDGFRGFGVVRLS 522 Query: 188 RVDNDPRALGKRL 200 DP ALG L Sbjct: 523 DAQEDPLALGLTL 535 >gi|325292003|ref|YP_004277867.1| two component sensor kinase [Agrobacterium sp. H13-3] gi|325059856|gb|ADY63547.1| two component sensor kinase [Agrobacterium sp. H13-3] Length = 1248 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 229/499 (45%), Positives = 328/499 (65%), Gaps = 9/499 (1%) Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 + L+ ET+D+ P+ V++ L +ANP FL LT Y S+D+++ GGL LL +L D Sbjct: 745 ADALSAETLDQMPVALLVHAGDRLIHANPDFLRLTGYGSLDELDEVGGLEALLQRQELED 804 Query: 378 NNAIKPVMLYRS-DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP---ENMPQNGI 433 + M+ S + I ARL +I+W +L ++ +P E+ Q P N + Sbjct: 805 MPDNEGGMVVVSAENDIIPVKARLQSIRWEDTKALMLSLVPLEE-KQAPVTAANENTSAA 863 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 E + D + ++ EV +L SILE +DG+ ++ +G I S NR+ S LF Y +I Sbjct: 864 ETANADAG-SVSVLQGEVEELHSILETATDGVVLLGDDGEIRSLNRSASALFNYDNGEIA 922 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFS 551 KPF + + YL+ + + + L + +G L L + I +L S Sbjct: 923 GKPFVTLFAHESQRAVLDYLSGLANNGVASVLNDGREVIGREASGGFLPLFMTIGRLKSS 982 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 Y + + DI++WK+ + +L +AK+ AE ++HK+DFLARVSHEIRTPL AIIGF++++ Sbjct: 983 HGYCVVIRDITQWKRTEEELRNAKRAAETANAHKTDFLARVSHEIRTPLNAIIGFADMMA 1042 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 +RFGP+G+PRY+EY+N I RSG VLDIVNDLLDISKIE+G+M++ F V L+E V+EA Sbjct: 1043 TERFGPIGHPRYVEYSNDIGRSGRHVLDIVNDLLDISKIEAGQMDVDFIAVPLNETVAEA 1102 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 +SLVQ AN +R++IRT+ + ++P+I+ADLRS+KQI LNILSNAI FTPSGGQI++ST + Sbjct: 1103 VSLVQPQANNQRVIIRTALSQSVPQIVADLRSIKQIVLNILSNAIRFTPSGGQIVVSTAY 1162 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS-QQIRGEGTGLGLPLAKAMVDANMG 790 +N V LR+RDTG+GMT ELE+AMKPF Q+ +S +++RG+GTGLGLPL KAMVDAN Sbjct: 1163 EANGSVALRIRDTGIGMTRAELEQAMKPFRQVASSGKRVRGDGTGLGLPLTKAMVDANRA 1222 Query: 791 KFYIFSTPAKGTLIEIIFP 809 F I STP +GTL+EI FP Sbjct: 1223 NFSITSTPNEGTLVEITFP 1241 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 68/182 (37%), Positives = 98/182 (53%) Query: 16 SNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFV 75 + Q S+ + + E+++ E+ ++ + ++ + D FV Sbjct: 342 AEVPATGQASSEDHTEQAPDVERAEAEDEVAETIAAQDAAPVEEDLPAAVEPTDEPQPFV 401 Query: 76 FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD 135 F+ R RF W IDA G IS E + +G A + GM DV+ + ++DP I + Sbjct: 402 FNAGARASRFVWKIDAEGRFSSISHEFAEAVGAKAAAVEGMSFADVAALFNLDPEGKIRE 461 Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195 LL R++TW GKT WP+EGT+L VPIDLAALP Y+R+REF GFRGFGIV + DP A Sbjct: 462 LLGRRDTWSGKTIYWPVEGTSLMVPIDLAALPTYTRSREFDGFRGFGIVRLADAAEDPHA 521 Query: 196 LG 197 G Sbjct: 522 TG 523 >gi|15964474|ref|NP_384827.1| putative sensor histidine kinase protein [Sinorhizobium meliloti 1021] gi|307308417|ref|ZP_07588121.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] gi|15073651|emb|CAC45293.1| Two-component histidine kinase, stationary-phase regulator of cell surface physiology and symbiosis [Sinorhizobium meliloti 1021] gi|306901020|gb|EFN31628.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] Length = 1134 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 221/507 (43%), Positives = 317/507 (62%), Gaps = 17/507 (3%) Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 P L+A G ++ E +D+ P+ V+ L +AN FL LT Y++++ E GGL Sbjct: 633 EPGLTAR--NGAAMSSEILDRLPVALLVHHGDALLHANAEFLRLTGYENLEAFEQEGGLE 690 Query: 368 TLLDAPKLSDNNAIKP---VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 L ++ A KP + L R D I A LH+I+W +++L + P + Sbjct: 691 ALF--ALGNEAGAAKPNGTMTLVRKDGRLIPVGAHLHSIRWEGKSALMLALTPAGASEAE 748 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 + G ++ +E+ +L SILE +DG+ ++ R+G I + NR+ S L Sbjct: 749 KQAREDEGA--------AEASRLRMEIDELRSILETATDGVVVLGRDGDIRTMNRSASAL 800 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLR 542 F Y D+ KPF + + YL + + L + +G + L Sbjct: 801 FDYDEADMRGKPFAALFAHESQKAVIDYLQGLSGHGVASVLNDGREVIGREAAGGFIPLF 860 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + I +L S+ Y + DI++WK+ + +L +AK+ AE ++HK++FLARVSHEIRTPL A Sbjct: 861 MTIGRLSSSNGYCAVIRDITQWKRTEEELRNAKRAAETANAHKTEFLARVSHEIRTPLNA 920 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 IIGFS+++ ++ FGP+G+PRYIEYA I RSG VLDIVNDLLDISKIE+G+M+L F V Sbjct: 921 IIGFSDMMASEHFGPIGHPRYIEYAGDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFGAV 980 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 L+EAVSEA+SLVQ AN +R++IRTS + ++P ++AD RS+KQIALNIL+NAI FTPSG Sbjct: 981 DLNEAVSEAVSLVQPQANSQRVIIRTSLSGSVPEVVADDRSIKQIALNILANAIRFTPSG 1040 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 GQI++ST++ +N VILR+RDTG+GMT EL++AMKPF Q+ + RG+GTGLGLPL K Sbjct: 1041 GQIVVSTSYEANGSVILRIRDTGIGMTRNELDQAMKPFRQVTTGGRKRGDGTGLGLPLTK 1100 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 AM +AN +F I S P +GTL+EI FP Sbjct: 1101 AMAEANRAQFAITSAPNEGTLVEISFP 1127 Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 66/129 (51%), Positives = 84/129 (65%) Query: 74 FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133 F F R VRF W IDA G EISEE +G A +IG+ D++D +DP++ I Sbjct: 343 FAFAAGGRAVRFVWKIDAEGRFSEISEEFASAVGPKAADVIGVSFTDLADRYDLDPDDKI 402 Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 +LL R++TW GKT WP++GTNL VP+DLAALP YSR+REF GFRGFGIV + D Sbjct: 403 NELLHRRDTWSGKTIFWPVQGTNLKVPVDLAALPTYSRSREFDGFRGFGIVRIADAVPDA 462 Query: 194 RALGKRLDK 202 +A G LD+ Sbjct: 463 KAAGLALDR 471 >gi|307318980|ref|ZP_07598411.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] gi|306895394|gb|EFN26149.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] Length = 1133 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 221/507 (43%), Positives = 317/507 (62%), Gaps = 17/507 (3%) Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 P L+A G ++ E +D+ P+ V+ L +AN FL LT Y++++ E GGL Sbjct: 632 EPGLTAR--NGAAMSSEILDRLPVALLVHHGDALLHANAEFLRLTGYENLEAFEQEGGLE 689 Query: 368 TLLDAPKLSDNNAIKP---VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 L ++ A KP + L R D I A LH+I+W +++L + P + Sbjct: 690 ALF--ALGNEAGAAKPNGTMTLVRKDGRLIPVGAHLHSIRWEGKSALMLALTPAGASEAE 747 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 + G ++ +E+ +L SILE +DG+ ++ R+G I + NR+ S L Sbjct: 748 KQAREDEGA--------AEASRLRMEIDELRSILETATDGVVVLGRDGDIRTMNRSASAL 799 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLR 542 F Y D+ KPF + + YL + + L + +G + L Sbjct: 800 FDYDESDMRGKPFAALFAHESQKAVIDYLQGLSGHGVASVLNDGREVIGREAAGGFIPLF 859 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + I +L S+ Y + DI++WK+ + +L +AK+ AE ++HK++FLARVSHEIRTPL A Sbjct: 860 MTIGRLSSSNGYCAVIRDITQWKRTEEELRNAKRAAETANAHKTEFLARVSHEIRTPLNA 919 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 IIGFS+++ ++ FGP+G+PRYIEYA I RSG VLDIVNDLLDISKIE+G+M+L F V Sbjct: 920 IIGFSDMMASEHFGPIGHPRYIEYAGDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFGAV 979 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 L+EAVSEA+SLVQ AN +R++IRTS + ++P ++AD RS+KQIALNIL+NAI FTPSG Sbjct: 980 DLNEAVSEAVSLVQPQANSQRVIIRTSLSGSVPEVVADDRSIKQIALNILANAIRFTPSG 1039 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 GQI++ST++ +N VILR+RDTG+GMT EL++AMKPF Q+ + RG+GTGLGLPL K Sbjct: 1040 GQIVVSTSYEANGSVILRIRDTGIGMTRNELDQAMKPFRQVTTGGRKRGDGTGLGLPLTK 1099 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 AM +AN +F I S P +GTL+EI FP Sbjct: 1100 AMAEANRAQFAITSAPNEGTLVEISFP 1126 Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 66/129 (51%), Positives = 84/129 (65%) Query: 74 FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133 F F R VRF W IDA G EISEE +G A +IG+ D++D +DP++ I Sbjct: 343 FAFAAGGRAVRFVWKIDAEGRFSEISEEFASAVGPKAADVIGVSFTDLADRYDLDPDDKI 402 Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 +LL R++TW GKT WP++GTNL VP+DLAALP YSR+REF GFRGFGIV + D Sbjct: 403 NELLHRRDTWSGKTIFWPVQGTNLKVPVDLAALPTYSRSREFDGFRGFGIVRIADAVPDA 462 Query: 194 RALGKRLDK 202 +A G LD+ Sbjct: 463 KAAGLALDR 471 >gi|222147633|ref|YP_002548590.1| two component sensor kinase [Agrobacterium vitis S4] gi|221734621|gb|ACM35584.1| two component sensor kinase [Agrobacterium vitis S4] Length = 1410 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 224/519 (43%), Positives = 317/519 (61%), Gaps = 30/519 (5%) Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL---------- 370 +P+ +D P+ + L +ANP FL LT Y +D + +GGL LL Sbjct: 885 FSPDVLDMLPVALLAHRGDTLIHANPEFLALTGYADLDALAQSGGLDALLQRDDVVQGDN 944 Query: 371 ---DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK------- 420 D P D +++ R+D + SARL +I+W ++L + +P Sbjct: 945 PQDDQPGTGDARRDGRLVVVRADDALVPVSARLQSIRWEEASALLLALVPQAATKPSEAV 1004 Query: 421 -ANQFPENMPQNGIEPE---DVDTRINKRK---MEIEVMQLCSILEATSDGIAIINREGI 473 A+ P ++ G + D TR++ + + IEV +L SILE +DG+ I+ +G Sbjct: 1005 IADHTPRSVADAGDSSQPGLDHPTRLDAVEHTGLRIEVEELRSILETATDGVVTISTDGE 1064 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLG 531 I + N A S LF Y +DI KPF + + YL + + L + +G Sbjct: 1065 IRTVNGAASALFNYDEDDIRGKPFVTLFAHESQRAILDYLGGLTGHGVASVLNDGREVIG 1124 Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 + L + I +L S+ + + DI++WK+ + +L AK+ AE ++HK+DFLAR Sbjct: 1125 RESSGGFIPLFMTIGRLSSSNGFCAVIRDITQWKRTEEELRSAKRAAETANAHKTDFLAR 1184 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 VSHEIRTPL AIIGF++++ ++RFGP+G+ RY EYA I RSG VLDIVNDLLDISKIE Sbjct: 1185 VSHEIRTPLNAIIGFADIMADERFGPIGHGRYAEYAADIGRSGRHVLDIVNDLLDISKIE 1244 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +G+M+L F V L+E VSEA+++VQ AN +R++IRT+ + ++P ++AD+RS+KQI LNI Sbjct: 1245 AGEMDLDFIAVGLNETVSEAVAIVQPQANGQRVIIRTALSQSVPNVVADMRSIKQIVLNI 1304 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIR 770 LSNAI FTPSGGQII+ST + N V LR+RDTG+GMT ELE+AMKPF Q+ P ++R Sbjct: 1305 LSNAIRFTPSGGQIIVSTNYEPNGSVTLRIRDTGIGMTRAELEQAMKPFRQVSPGGARLR 1364 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 G+GTGLGLPL KAMVDAN F I STP +GTL+EI FP Sbjct: 1365 GDGTGLGLPLTKAMVDANRASFAIQSTPNEGTLVEITFP 1403 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 56/117 (47%), Positives = 78/117 (66%) Query: 70 SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP 129 +E F F P R RF W +DA G E+S E K +G + + G D++ + ++DP Sbjct: 473 TEEDFAFAPTMRAARFVWKVDALGCFSEVSPEFGKAVGPRSAAIEGQTFADLAALFNLDP 532 Query: 130 NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186 + I +LLK+++TW GKT WPIEGT+L VP+DLAALP Y+RNR+F GFRGFG+V + Sbjct: 533 DGKIVELLKKRDTWSGKTIYWPIEGTSLKVPVDLAALPTYTRNRDFDGFRGFGVVRL 589 >gi|260463553|ref|ZP_05811752.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium opportunistum WSM2075] gi|259030644|gb|EEW31921.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 1307 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 205/505 (40%), Positives = 321/505 (63%), Gaps = 12/505 (2%) Query: 312 SAYFDEGENLTPETV--DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 SA+ E+ P+T+ K P+P ++S L YAN FL LT Y ++DD+E AGGL L Sbjct: 801 SAFSVGDESKAPDTLLLGKLPVPLLIHSGDQLHYANEEFLNLTGYAALDDLEDAGGLGAL 860 Query: 370 LDAPKLSD---NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 P D + + + + L D A L ++ W R+ M + ++ P Sbjct: 861 FADPYAEDGVSDGSDRALRLKTRDGQEFPIDAILRSVPW-RDGKALMLVVRRSGEDETPV 919 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 + G EP T+ + +++ + ++ +I++ +DG+ +I +G I S +R LFG Sbjct: 920 ALHVVGDEP----TQPDISELKARIAEMRTIIDTATDGVVLIGTDGTIRSISRPAEALFG 975 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRII 544 + +++ KPF + YLT + + L + +G + + + L + Sbjct: 976 FDSDEVTGKPFASLFAIESQRAARDYLTGLSEPGVASVLNDGREVIGREAQGRFIPLFMT 1035 Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 I +LP S + + DI++WK+ + L+ A+ +AE+ SS K+DFLAR+SHEIRTPL AII Sbjct: 1036 IGRLPNDSGFCAVVRDITQWKRAEEDLTQARAVAERASSQKTDFLARISHEIRTPLNAII 1095 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 GFSE++ +++FGP+ N RY +Y I+RSGN VLD+VNDLLDISKIE+G+ + +E VSL Sbjct: 1096 GFSELMVDEKFGPVANDRYRDYLRDINRSGNHVLDLVNDLLDISKIEAGQQEMAYEAVSL 1155 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 ++ ++E ++++Q AN +R++IR+SFA+ +P ++ADLRSV+QIALNILSNAI +T +GGQ Sbjct: 1156 NDTLAETVAMMQPQANRERVIIRSSFASRLPEVVADLRSVRQIALNILSNAIRYTQAGGQ 1215 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 +I+ST + ++ +V++RVRDTG+GM+ E+E+A+KPF QI ++ RG+GTGLGLPL KAM Sbjct: 1216 VIVSTAYETSGDVVMRVRDTGIGMSQAEIEQALKPFKQINALKRGRGDGTGLGLPLTKAM 1275 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809 V+AN +F I STP +GTL+E+ FP Sbjct: 1276 VEANRARFTINSTPGEGTLVEVAFP 1300 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 52/118 (44%), Positives = 72/118 (61%) Query: 83 VRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142 +RF W DA G +S E +G A +IG R DV+ +D + I LL+R++T Sbjct: 372 MRFVWRTDAEGKFSTLSPEFADIVGQPAADVIGRRFRDVAAAFGLDASGEIAGLLERRDT 431 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 W G+T LWP+ GT+L +P+DLAALP+Y R+R F GFRGFG+ + DP A+G L Sbjct: 432 WSGRTALWPVVGTDLKIPVDLAALPVYGRSRAFEGFRGFGVARPSDAVVDPEAIGMAL 489 >gi|319782145|ref|YP_004141621.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168033|gb|ADV11571.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 1260 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 203/505 (40%), Positives = 320/505 (63%), Gaps = 12/505 (2%) Query: 312 SAYFDEGENLTPET--VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 SA+ E+ P+T + K P+P ++S L YAN FL LT Y+++DD+ AGGL L Sbjct: 754 SAFSAGDEHKAPDTSLLGKLPVPLLIHSGDQLHYANEEFLSLTGYEALDDLADAGGLGAL 813 Query: 370 LDAPKLSD---NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 P D + + + L D A L ++ W R+ M + + P Sbjct: 814 FADPYADDGVSDGTDRALRLKTRDGQEFPIEAILRSVPW-RDGKALMLVVRRSGEDDAPA 872 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 ++ G D T+ + +++ + ++ +I++ +DG+ +I R+G I S +R LFG Sbjct: 873 SLHVVG----DEQTQPDISELKARIAEMRTIIDTATDGVVLIGRDGTIRSISRPAEALFG 928 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRII 544 + +D+ KPF + YL + + + + +G + + + L + Sbjct: 929 FDSDDVTGKPFASLFAIESQRAARDYLNGLSEPGVASVMNDGREVIGRESQGRFIPLFMT 988 Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 I +LP S + + DI++WK+ + L+ A+ +AE+ SS K+DFLAR+SHEIRTPL AII Sbjct: 989 IGRLPNDSGFCAVVRDITQWKRAEEDLTQARAVAERASSQKTDFLARISHEIRTPLNAII 1048 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 GFSE++ +++FGP+ N RY +Y I+RSGN VLD+VNDLLDISKIE+G+ + +E VSL Sbjct: 1049 GFSELMVDEKFGPVANDRYRDYLRDINRSGNHVLDLVNDLLDISKIEAGQQEMAYEAVSL 1108 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 ++ ++E ++++Q AN +R++IR+SFA+ +P ++ADLRSV+QIALNILSNAI +T +GGQ Sbjct: 1109 NDTLAETVAMMQPQANRERVIIRSSFASRLPEVVADLRSVRQIALNILSNAIRYTQAGGQ 1168 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 +I+ST + ++ +V++RVRDTG+GM++ E+E+A+KPF QI ++ RG+GTGLGLPL KAM Sbjct: 1169 VIVSTAYETSGDVVMRVRDTGIGMSHAEIEQALKPFKQINALKRGRGDGTGLGLPLTKAM 1228 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809 V+AN +F I STP +GTL+E+ FP Sbjct: 1229 VEANRARFTINSTPGEGTLVEVAFP 1253 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 56/139 (40%), Positives = 78/139 (56%) Query: 62 VSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV 121 V +T+ D VRF W DA G +S E +G A +IG R DV Sbjct: 334 VQSTSAATPTTVSAIDRAAAPVRFVWRTDAEGKFSALSPEFADIVGKPAADVIGRRFRDV 393 Query: 122 SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF 181 + +DP+ I LL+R++TW G++ LWP+ GT+L +P+DLAALP+Y R+R F GFRGF Sbjct: 394 AATFGLDPSGEISGLLERRDTWSGRSVLWPVVGTDLKIPVDLAALPVYGRSRAFEGFRGF 453 Query: 182 GIVHVNRVDNDPRALGKRL 200 G+ + DP A+G L Sbjct: 454 GVARASDAVVDPEAIGMAL 472 >gi|163758106|ref|ZP_02165194.1| putative two-component regulator sensor histidine kinase protein [Hoeflea phototrophica DFL-43] gi|162284395|gb|EDQ34678.1| putative two-component regulator sensor histidine kinase protein [Hoeflea phototrophica DFL-43] Length = 1325 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 217/506 (42%), Positives = 311/506 (61%), Gaps = 21/506 (4%) Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL----DAPKL 375 L +D P P V++ L +ANP FL LT Y S++ + AGGL LL D +L Sbjct: 818 GLNASLIDAIPSPLLVHAADTLIHANPEFLELTGYGSLEALSEAGGLDHLLERSGDDGQL 877 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF------IPFEKANQFPENMP 429 D + + + R D SARL ++ W ++L + P + P + Sbjct: 878 EDGS----LTVRRGDGASRKVSARLRSVNWGDAHALLLALAPATESAPEADQAESPAPVA 933 Query: 430 QNGIEPEDVD----TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 Q I D+D + + IE +L SILE +DG+ I++ +G I S N + LF Sbjct: 934 QL-IATNDMDIDPAQAGSSDALAIEAEELRSILETATDGVVILDNDGTIRSMNGSAFALF 992 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRI 543 Y D L +PF + + + Y++ + + L + +G L L + Sbjct: 993 NYDEHDTLHQPFAMLFAHESQRAVMDYISGLAEHGVSSVLNDGREVIGREASGGFLPLFM 1052 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 I +L S+ Y + DI++WK+ + +L AK+ AE +SHKSDFLARVSHEIRTPL AI Sbjct: 1053 TIGRLSRSNGYCAVLRDITQWKRTEEELRTAKRDAETANSHKSDFLARVSHEIRTPLNAI 1112 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 IGFSE++ +RFGP+G+PRY+EYA+ I SG VLDIVNDLLDISKIE+G++++ F VS Sbjct: 1113 IGFSEMMSEERFGPIGSPRYLEYAHDIGNSGKHVLDIVNDLLDISKIEAGQVDMEFTAVS 1172 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 L++ ++E++SL+Q AN +R++IRTS + ++P ++AD RSVKQIALN+LSNAI +TPSGG Sbjct: 1173 LNDHLAESVSLLQPMANSQRVIIRTSLSESVPDVVADQRSVKQIALNLLSNAIRYTPSGG 1232 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 QI++ST++ + V++R+RDTG+GM ELE+AMKPFGQ+ + RGEGTGLGLPL KA Sbjct: 1233 QIVVSTSYEPSGNVVIRIRDTGIGMNRKELEQAMKPFGQVGAGPRQRGEGTGLGLPLTKA 1292 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809 MV+AN +F I S +GTL+ I FP Sbjct: 1293 MVEANRAQFDIVSAAGEGTLVSIAFP 1318 Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 59/127 (46%), Positives = 81/127 (63%) Query: 74 FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133 F FDP + RF W ID G E+S E +G A +IG + D++++ ++DP++ I Sbjct: 403 FRFDPNAKPTRFVWKIDRGGAFSEVSAEFAAAVGPNAADIIGRKFPDIANVFNLDPDHVI 462 Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 + L R++TW GKT WPI+GTNL P+DLAALP Y+R+R+F GFRGFGIV DP Sbjct: 463 IEALNRRDTWSGKTVFWPIQGTNLVTPVDLAALPTYTRDRQFDGFRGFGIVRSGETRTDP 522 Query: 194 RALGKRL 200 A+G L Sbjct: 523 EAIGLAL 529 >gi|13475462|ref|NP_107026.1| two component histidine protein kinase [Mesorhizobium loti MAFF303099] gi|14026214|dbj|BAB52812.1| two component histidine protein kinase [Mesorhizobium loti MAFF303099] Length = 1348 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 203/505 (40%), Positives = 320/505 (63%), Gaps = 12/505 (2%) Query: 312 SAYFDEGENLTPET--VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 SA+ E+ P+T + K P+P ++S L YAN FL LT Y +++D+E AGGL L Sbjct: 842 SAFSVGNESKAPDTSLLGKLPVPLLIHSGDQLHYANDEFLDLTGYDTLEDLEDAGGLGAL 901 Query: 370 LDAPKLSD---NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 P D + + + + L D A L ++ W R+ M + + P Sbjct: 902 FADPYADDGTSDGSDRALRLKTRDGQEFPIDAILRSVPW-RDGKALMLVVRRSGDDDAPV 960 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 + G EP T+ + +++ + ++ +I++ +DG+ +I +G I S +R LFG Sbjct: 961 ALHAVGEEP----TQPDISELKARIAEMRTIIDTATDGVVLIGSDGTIRSISRPAEALFG 1016 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRII 544 + +++ KPF + YLT + + + + +G + + + L + Sbjct: 1017 FDSDEVTGKPFASLFAIESQRAARDYLTGLSEPGVASVMNDGREVIGREAQGRFIPLFMT 1076 Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 I +LP S + + DI++WK+ + L+ A+ +AE+ SS K+DFLAR+SHEIRTPL AII Sbjct: 1077 IGRLPNDSGFCAVVRDITQWKRAEEDLTQARAVAERASSLKTDFLARISHEIRTPLNAII 1136 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 GFSE++ +++FGP+ N RY +Y I+RSGN VLD+VNDLLDISKIE+G+ + +E VSL Sbjct: 1137 GFSELMVDEKFGPVANDRYRDYLRDINRSGNHVLDLVNDLLDISKIEAGQQEMAYEAVSL 1196 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 ++ ++E ++++Q AN +R++IR+SFA+ +P ++ADLRSV+QIALNILSNAI +T +GGQ Sbjct: 1197 NDTLAETVAMMQPQANRERVIIRSSFASRLPEVVADLRSVRQIALNILSNAIRYTQAGGQ 1256 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 +I+ST + ++ +V++RVRDTG+GM+ E+E+A+KPF QI ++ RG+GTGLGLPL KAM Sbjct: 1257 VIVSTAYETSGDVVMRVRDTGIGMSQAEIEQALKPFKQINALKRGRGDGTGLGLPLTKAM 1316 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809 V+AN +F I STP +GTL+E+ FP Sbjct: 1317 VEANRARFTINSTPGEGTLVEVAFP 1341 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 51/118 (43%), Positives = 72/118 (61%) Query: 83 VRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142 +RF W DA G +S E +G A +IG R DV+ +D + I LL+R++T Sbjct: 396 LRFVWRTDAEGKFSALSPEFADIVGKPAADVIGRRFRDVAAAFGLDASGEIAGLLERRDT 455 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 W G++ LWP+ GT+L +P+DLAALP+Y R+R F GFRGFG+ + DP A+G L Sbjct: 456 WSGRSVLWPVVGTDLKIPVDLAALPVYGRSRAFEGFRGFGVARASDATVDPEAIGMAL 513 >gi|110632533|ref|YP_672741.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium sp. BNC1] gi|110283517|gb|ABG61576.1| PAS/PAC sensor signal transduction histidine kinase [Chelativorans sp. BNC1] Length = 1192 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 201/483 (41%), Positives = 310/483 (64%), Gaps = 16/483 (3%) Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388 P+P ++S L YAN F LT Y + ++E AGGL L + P + N+ K ++L Sbjct: 717 LPLPVLIHSGDRLHYANREFYRLTGYADLAELESAGGLGALFEEPA-AGNSPKKTLLLRM 775 Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 +D T A L ++ W+ +L + P +A E P+ + +++ R++ Sbjct: 776 ADGTDRPVEAHLQSVAWDGRKALMLALHPAMQA----EPTPEEAAKAAELEARLS----- 826 Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 ++ +I++ +DGIA+I +G I S NR LFG+ E++ KPF+ + Sbjct: 827 ----EMRAIVDTATDGIAVIGNDGTIRSINRPAEALFGFDAENVTGKPFSSLFAIESQRT 882 Query: 509 MNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566 + YL + + L + +G + + + L + I +LP S Y + DI+ WK+ Sbjct: 883 VQDYLAGLSDNGVASVLNDGRQVIGRESQGRFIPLFMTIGRLPNGSGYCAVLRDITHWKR 942 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + L+ A+ AE+ SS KS+FLARVSHEIRTPL AIIGFSE++ +++FGP+GN RY +Y Sbjct: 943 AEEDLTQARAQAERASSQKSEFLARVSHEIRTPLNAIIGFSELMIDEKFGPIGNDRYRDY 1002 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I+RSGN VLD+VNDLLDISKIE+G+ + E V L++ +++ I+++Q AN +R++I Sbjct: 1003 LRDINRSGNHVLDLVNDLLDISKIEAGQQEMAHEAVPLNDTLAQVIAMMQPQANRERVII 1062 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 R+S A+ +P ++ADLRSV+QIA+N+LSNA+ +TP+GGQ+++ST + + V+LRVRDTGV Sbjct: 1063 RSSLASRLPDVVADLRSVRQIAINLLSNAVRYTPAGGQVVVSTVYERDGSVVLRVRDTGV 1122 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 GM++ EL++A+KPF QI ++ RG+GTGLGLPL +AMV+AN +F I STP +GTL+EI Sbjct: 1123 GMSSAELDEALKPFRQINALRRKRGDGTGLGLPLTRAMVEANRAQFSIASTPGEGTLVEI 1182 Query: 807 IFP 809 IFP Sbjct: 1183 IFP 1185 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 59/120 (49%), Positives = 77/120 (64%) Query: 81 RTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ 140 RTVRF+W DA G IS+E + +G A +IG +VS+ +D + I LL R+ Sbjct: 273 RTVRFSWRTDAQGRFSSISDEFAQAMGRNATDVIGRTFREVSNAFGLDADGSISRLLDRR 332 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 +TW G+T +WP+EGTNL VP+DLAALPIY R R F GFRGFGI + + DP A+G L Sbjct: 333 DTWSGRTVMWPLEGTNLKVPVDLAALPIYGRGRVFEGFRGFGIARLGEAELDPEAIGTVL 392 >gi|218459898|ref|ZP_03499989.1| probable two-component sensor histidine kinase protein [Rhizobium etli Kim 5] Length = 374 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 193/367 (52%), Positives = 263/367 (71%), Gaps = 3/367 (0%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 K+++EV +L SILE +DG+ +I EG I S NR+ S LF Y ++ KPF + + Sbjct: 1 KLQVEVEELRSILETATDGVVVIGTEGDIRSMNRSASALFNYDEQETRGKPFVMLFAHES 60 Query: 506 PSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 + YL + + L + +G + L + + +L S+ Y + DI++ Sbjct: 61 QKAVLDYLNGLSGHGVASVLNDGREVIGREAAGGFVPLFMTMGRLTSSNGYCAVIRDITQ 120 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 WK+ +++L +AK AE ++HK+DFLARVSHEIRTPL AIIGFS+++ +RFGP+G+PRY Sbjct: 121 WKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIGHPRY 180 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 IEYAN I RSG VLDIVNDLLDISKIE+G+M+L F V L+EAVSEA++LVQ AN +R Sbjct: 181 IEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQPQANGQR 240 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 ++IRT+ ++ +P ++ADLRS+KQIALNILSNAI FTPSGGQI++ST++ +N V+LRVRD Sbjct: 241 VIIRTALSHAVPDVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSVVLRVRD 300 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQ-QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TG+GMT EL+ AMKPF Q+ ++Q + RG+GTGLGLPL KAMVDAN F I S P +GT Sbjct: 301 TGIGMTRAELDHAMKPFRQVSSTQARHRGDGTGLGLPLTKAMVDANRATFSINSAPNEGT 360 Query: 803 LIEIIFP 809 L+EI FP Sbjct: 361 LVEITFP 367 >gi|114706370|ref|ZP_01439272.1| putative sensor histidine kinase protein [Fulvimarina pelagi HTCC2506] gi|114538231|gb|EAU41353.1| putative sensor histidine kinase protein [Fulvimarina pelagi HTCC2506] Length = 1146 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 257/839 (30%), Positives = 404/839 (48%), Gaps = 78/839 (9%) Query: 35 ETEKSKKENPCH-DSFEQSNFTDQNQESVSNTNY----LDSENTFVFDPIPRTVRFTWNI 89 E+E + + P D+ +++ F +VS+ S FV D R+ RF W + Sbjct: 315 ESEAAHRSKPFDGDTRQETAFLPDESRTVSSPAAGEPDFGSSKDFVPDFSERSKRFVWRL 374 Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D G +S E +G A +IG+ D+S+ L +DP+ I L+ R++TW ++ L Sbjct: 375 DQEGRFHALSPEFASVVGPRAADVIGIAFADLSEALDLDPSGEIASLIDRRDTWSDRSVL 434 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 WP+E ++ VPIDLAALP+YSR+R F GFRGFG++ + DP GKRL +HE Sbjct: 435 WPVEASDKRVPIDLAALPVYSRDRSFDGFRGFGVLRPAEAETDPENWGKRL-ANGETMHE 493 Query: 210 I-KKGHSSVEKEKYDIFSQ---QSPPPHLRMKNKVSSL---TEYYAHKDDVLKTEKYPLL 262 I + S E D ++ + ++ + S L TE D PL Sbjct: 494 IVAEAVRSRPVEVADFGTEDDDEDANTLEQITDDASGLPDETEQIVRLADRRLRRDAPLS 553 Query: 263 TSEESS-------LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP------ 309 E ++ L E ++ T K+ S + + H Sbjct: 554 DEEAAAFRTIGVALSGSERGGNLDAAIQTAKEKIALFGGPPLLSSANIHRKRHAGDTEAG 613 Query: 310 SLSAYFDEGENLTPET-----VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364 SLS +G +L T + P+P V S + + N F LT Y+ + AG Sbjct: 614 SLSEPQRQGSDLAIATDLAAYYGRLPVPILVQSGDHTVFTNEEFADLTGYRDATALSAAG 673 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK---A 421 GL L D + + V L R++ I AR+ I + L ++F + + Sbjct: 674 GLDRLFDESERGEC-----VRLRRANGKTIDVRARMQRITMRGRSFLVISFFATPRMTVS 728 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 + P+ P + ED + E + QL + +EA + + +++ EG + + N Sbjct: 729 DLQPKGAP---LITEDKADDVEALDAEARLAQLMASVEAAGEAVLVLDHEGRVEAANERG 785 Query: 482 SKLFGYPV-----------EDILRKP--------FTVFLEQNTPSVMNHYLTEILSLDLR 522 +LF V +D P FT E + S+ + E SL LR Sbjct: 786 IELFASAVRPDQDHVATKMDDDGAAPSTPLQGFLFTKLFEGESRSLARELIRET-SLGLR 844 Query: 523 QTLE------KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE------WKQEKNK 570 + + + + K ++ ++ + + + M D+ E + E Sbjct: 845 EDRAGGDADLAVRIADGEPRKFTTVAEPLE----TGGWCVVMRDLGEPGVRGVFPDEDED 900 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + A+ AE +S K+ LA VSHEIRTP+TA++GF++ I+ + FGP+GNPRY++Y I Sbjct: 901 VRTAQHRAEADSVRKTQLLASVSHEIRTPMTAVLGFADAIEGEAFGPIGNPRYLDYIADI 960 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 RS VLD+VNDLL++SK E+G + L F V+L++ V E +S++Q A RI++R++ Sbjct: 961 KRSSRHVLDLVNDLLELSKAEAGGLELDFRTVALNQVVGEVVSMMQPVAGGARIVLRSNL 1020 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 ++P+++AD RS++QI N++ NAI+ TP+GGQII+S+ + + V LR RD GVGM Sbjct: 1021 PPSVPQVVADERSIRQIMTNLVQNAINSTPAGGQIIVSSQYREDGSVTLRCRDNGVGMNE 1080 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ELE A +PFG+ R GTGLGLPLA AM +AN I S P GT++E+ FP Sbjct: 1081 KELEFAKQPFGRPKLDGGPRRRGTGLGLPLAYAMAEANGAAIAIDSAPQNGTMVELRFP 1139 >gi|209884263|ref|YP_002288120.1| PAS/PAC sensor signal transduction histidine kinase [Oligotropha carboxidovorans OM5] gi|209872459|gb|ACI92255.1| PAS/PAC sensor signal transduction histidine kinase [Oligotropha carboxidovorans OM5] Length = 1066 Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 240/781 (30%), Positives = 370/781 (47%), Gaps = 82/781 (10%) Query: 83 VRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142 +RFTW +DA G S+E IG + +VS L +DP +H+ + + T Sbjct: 305 LRFTWAMDAEGRFSLGSDEFTHLIGVQTTAAFSRKWSEVSTELTLDPEDHVAQAVATRAT 364 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGKRLD 201 + G WP++G + +P++L+ LP+Y R+R F+G+RGFGI +D R A +R D Sbjct: 365 FSGILLHWPVDGVSGRLPVELSGLPVYGRDRTFAGYRGFGICR--DLDGLTRLAAQRRRD 422 Query: 202 KKFSHLHEIKKGHSSVEK----EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257 F + E+ E I PP H E H+ + E Sbjct: 423 ALFGSTPATAPASQTHEQPEAQEPVAIAEMHEPPAH-----------EPPTHEAEPETIE 471 Query: 258 KYPLLTSEESSLPEQEDFHTINLN-------QYTKKQYFGTLQNNSKESFEYL------- 303 + P +D T+ L Q +Q L++ ++ L Sbjct: 472 AIEAPANVVPFRPANDDGPTLALTPGETNAFQELARQLSARLESEVEQRRSALHAEEADD 531 Query: 304 SHRNHPSLSAYFDEGENLTPET----------------VDKCPIPFFVYSHGNLFYANPS 347 S P A FD E+ TP+ +D+ P+ +Y L +AN + Sbjct: 532 STAEQPHDDAIFDTEEDATPDEASTQLRRPAPSQNTSLIDRLPLGVLIYRADRLLHANAT 591 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS---------- 397 FL T Y S+ + GGL L P ++D +A D T I S Sbjct: 592 FLAATGYASLAALNKDGGLGALYVGPGVADVSAAD-------DGTPIKVSTLAMGEDNGR 644 Query: 398 -ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 ARLHTI W+ E++LA+ P Q P EP + IE +L + Sbjct: 645 NARLHTIDWDGESALALILSPDSPQPQAEHAAPVAIAEPP------PPAEARIEADELAT 698 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 ILE T++G+ + + +G +++ NR+ LF D+ + + + YL +I Sbjct: 699 ILETTAEGVVMFDGDGRVIACNRSAEALFSRDGTDLEGQNLIELFAPESQRAVLDYLEDI 758 Query: 517 LSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKL-PFSSCYSLTMHD------ISEWKQE 567 S + E + LG + ++L + + + P + Y D + Sbjct: 759 KSDAMESLFEQGRDVLGRAPDGGAMALSVTMGRTRPGRARYFAVFRDKPPPAFTAPVASP 818 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 AK+ EK +S K+D LAR+SHE+R P++AIIGF++V+ +RFG LGN RYI+Y Sbjct: 819 LRAAEQAKRADEKAASAKADLLARLSHEVRAPVSAIIGFADVMIEERFGALGNERYIDYM 878 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I SG V+ I++D+LD+S+IESGK++L F P L+ V + + ++Q AN +RI+IR Sbjct: 879 KDIRASGERVISIIDDMLDLSRIESGKLDLDFTPQDLNALVEQCVGMMQPQANRERIIIR 938 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 +S + +P I AD +++QIAL ++ AIH +GGQ+I+ST T EV LR+RDTG G Sbjct: 939 SSLTHGLPNIEADTHALRQIALTLIGTAIHLANAGGQVIVSTALTDLGEVALRIRDTGQG 998 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 M + E+ AM PF + P+ G G L AKA+++AN G+F+I S P GTLIE + Sbjct: 999 MNDNEIAAAMAPF-RTPSPADEVAAGNGANLSRAKALIEANRGRFHIKSAPNAGTLIEAV 1057 Query: 808 F 808 F Sbjct: 1058 F 1058 >gi|90419932|ref|ZP_01227841.1| signal transduction histidine kinase [Aurantimonas manganoxydans SI85-9A1] gi|90335973|gb|EAS49721.1| signal transduction histidine kinase [Aurantimonas manganoxydans SI85-9A1] Length = 1040 Score = 361 bits (927), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 201/495 (40%), Positives = 290/495 (58%), Gaps = 21/495 (4%) Query: 325 TVDKC-PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 TV C P+P V L Y N F LT Y + + AGGL+ L D D+ A Sbjct: 550 TVYGCLPLPVLVQIRETLVYGNREFFDLTGYDDIPALAEAGGLARLFD----GDDRAAGS 605 Query: 384 --VMLYRSDRTCIAASARLHTIQWNRENSLAMTFI--PFEKANQF---PENMPQNGIEPE 436 V + R +AA + + + L M+F P A PE PQ Sbjct: 606 GEVAIRRVTGETLAARSHMQRSTIAGRSCLVMSFFASPSLSAAALRSEPEVPPQGDAAET 665 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 D D + EV +L ++L A +DG+ +I+REG+I S NRA LFG +D +P Sbjct: 666 DAD-------LVAEVEELQAVLSAATDGVVLIDREGMIRSMNRAAHALFGIGADDAAGRP 718 Query: 497 FTVFL--EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554 F L E P++ + S + + +G E + L + +LP + Sbjct: 719 FVTLLAHESQKPTLEHIETLRTASATAPRDDGREVIGRVAEGGFVPLSVSFGRLPEERGW 778 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 + DIS K+ + +L A+ AE S KS FLA VSHE+RTPL AIIGF++VI + Sbjct: 779 CAVIRDISRAKRVEQELIKARSEAEAASLQKSQFLANVSHELRTPLNAIIGFADVIATEC 838 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 FGP+GN RY+EY + I RSG+ VLD+VNDLLDISKIE+GK+ L FE VSL+E + E ++L Sbjct: 839 FGPIGNERYLEYLDDIKRSGHHVLDLVNDLLDISKIEAGKLELAFEAVSLNEVIGEVVAL 898 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 +Q AN +++++R++ +++P ++AD RS++QIALN++SNA+ FTP+GGQII+ST+++ Sbjct: 899 MQPQANREQVIVRSNLPSSVPPVVADRRSMRQIALNLVSNAVRFTPAGGQIIVSTSYSPE 958 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +V++R RD+G+GM+ E+E AM PF Q+ + RGEGTGLGLPL KA+ +AN F + Sbjct: 959 GDVVVRFRDSGIGMSEDEIEIAMMPFQQVNPGNRRRGEGTGLGLPLTKALAEANRAGFAM 1018 Query: 795 FSTPAKGTLIEIIFP 809 STP +GTL+EI FP Sbjct: 1019 SSTPGEGTLVEISFP 1033 Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 48/123 (39%), Positives = 72/123 (58%), Gaps = 2/123 (1%) Query: 76 FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD 135 FD P VRF W ID+ G + +S E +G +I R +V++ +D + I Sbjct: 171 FDVAP--VRFVWRIDSEGRFRSLSPEFAAAVGPRFADVIDRRFEEVAEEYGLDADGDIRR 228 Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195 LL +++TW G+T WP+E + VP++LAALP+Y+R+R F GFRGFGIV + P A Sbjct: 229 LLAKRDTWSGRTLEWPVENSTRRVPVELAALPVYARDRSFDGFRGFGIVRLADAVEAPVA 288 Query: 196 LGK 198 + + Sbjct: 289 VAQ 291 >gi|192292979|ref|YP_001993584.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192286728|gb|ACF03109.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 1191 Score = 359 bits (922), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 242/800 (30%), Positives = 393/800 (49%), Gaps = 73/800 (9%) Query: 49 FEQSNFTDQNQESVSNTNYLDSENTFVFDPIPR--TVRFTWNIDAHGYLKEISEELPKTI 106 EQS + + T+ + T P PR +RF W ID G L S+E + I Sbjct: 418 VEQSAAPEPAAPEQAATDAAPAVETAPEPPAPRRHPLRFVWQIDLAGRLAIASDEFLRLI 477 Query: 107 GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAAL 166 G + +G R +V+D L +DP + L ++TW G T WP +G L +PI+++ L Sbjct: 478 GPHTAANLGERWAEVADRLGLDPQGLVAAALATRHTWSGITLQWPADGAALRLPIEMSGL 537 Query: 167 PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226 P+ + F+G+ R G D + H E + S Sbjct: 538 PVQDQGGAFAGY---------------RGFGVCRDLAALDYLAALRRHGPNEPLRPQPLS 582 Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK------------YPLLTSEESSL----- 269 P + ++ ++L D + T K P LT E+S Sbjct: 583 ADRAP-NSPASDQAAALDPLLNPLDTPVDTPKNVLPFRAANDARAPSLTPGENSAFHELA 641 Query: 270 -----------PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 P D +I ++ +Q T ++L+ P+ ++ Sbjct: 642 QQLAARLASETPPTADAPSIADDEVAPEQDAATTDTPEAPRADWLA----PTPASGASAR 697 Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + L +D P+ +Y L YANP+FL + SV +E AGGL L + D+ Sbjct: 698 DRLL---LDLMPVGVLIYRLDRLLYANPAFLARMGFASVAALEDAGGLDALYVDSGVGDS 754 Query: 379 NAIK----PVMLYRSDRTCIAAS-ARLHTIQWNRENSLAMTFIPFEKANQFPE--NMPQN 431 ++ P+ + + A + ARL TI W+ + +LA+ P PE P Sbjct: 755 SSSSETGTPITITAAQGGDAAPTEARLFTIAWDGDQALALICSPAPAPTAVPELPFAPTT 814 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 IE D + E +L +IL+ T++G+ + + G I + NR+ LFGY + Sbjct: 815 AIE--DAPAVVGAANAE----ELGAILDTTAEGVLMFDEAGQISAANRSAEALFGYDGDA 868 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI--TLGSTKEEKLLSLRIIIKKLP 549 +++ + + + YL I S + L+ LG +E L L + I + Sbjct: 869 LVQHNLIELFAPESRTAVLDYLDSIKSGRAQSVLDHGLEALGQVREGGLFPLSMTIGRTR 928 Query: 550 FSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 + D+S+ ++ + +LS AK++AE+ + K+D LAR+SHEIR PL AIIGF+E Sbjct: 929 TDGPNFFAVFRDLSQLQRTETELSQAKRLAERATGAKADVLARLSHEIRAPLNAIIGFAE 988 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 V+ +RFGPLGN RY++Y I SG V+ IV+DLLD+S+IE+GK++L F ++L+E V Sbjct: 989 VMIEERFGPLGNERYVDYMKDIRASGERVIGIVDDLLDLSRIETGKLDLAFASINLNELV 1048 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 ++++++Q AN +RI+IRTS A+++P ++AD ++++QI +N++S +IH + GQ+I+S Sbjct: 1049 EQSVAVMQPRANRERIIIRTSLAHSLPTVVADAQALRQIIMNLISTSIHLANAAGQVIVS 1108 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 T + EV+LRVRDTG + + EL A++PF + P+ R E G+ L L KA+V+AN Sbjct: 1109 TALSDAGEVVLRVRDTGSRLNDDELAAALQPF-RTPSD---RTEAAGVSLSLTKALVEAN 1164 Query: 789 MGKFYIFSTPAKGTLIEIIF 808 F+I S P GTLIE++F Sbjct: 1165 RATFHIKSAPQSGTLIEVVF 1184 >gi|217979578|ref|YP_002363725.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella silvestris BL2] gi|217504954|gb|ACK52363.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella silvestris BL2] Length = 836 Score = 356 bits (914), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 242/742 (32%), Positives = 359/742 (48%), Gaps = 98/742 (13%) Query: 83 VRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142 RF W DA L E+ LP+ IG +++G +L + D + L + + + Sbjct: 159 ARFLWRTDAEDRLIEVGPRLPEAIGEPKAELLGQKLARLVAGFDADKGMELARLFEARES 218 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 W G WP+ G + P+ +A P++ R+ GFRGFG++H PR R Sbjct: 219 WSGLDLAWPVAGEDFIAPVTIAGSPVFDHRRQLLGFRGFGLIH-------PR----RAAA 267 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 S + E K I +SP L S+ DD + L Sbjct: 268 PDSRIPESK------------IIVLRSP---LEAGAGPSAPQGPEQGADDASISGSRARL 312 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 S L EQE N L N +K +F+ L Sbjct: 313 ADLASRL-EQEWPAPPRANPRQSAAEPDPLPNGAKAAFDVL------------------- 352 Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP------KLS 376 PI V +G +AN L L + + ++ P +L Sbjct: 353 -------PIGVLVCGNGAALFANRFLLDLLGCADFASAKFREAIQPVMTRPASAEYLELR 405 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE-NMPQNGIEP 435 D + R+ R +A + H +W SLA P+ + ++G EP Sbjct: 406 DGSG-------RAVRLRVARAPLPHGPEWLEAISLA------------PQPSAARSGAEP 446 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 E ++++ E +L +IL+ +G+A+I+ G I S NR+ LF Y ++ + Sbjct: 447 E-------LKRLQREARELNAILDTAMEGVAVIDSAGRIKSLNRSGEALFCYDKAEVAGE 499 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC 553 PFTV + + Y + S + + + LG T++ + + + + K+ S+ Sbjct: 500 PFTVLVAPESRERALAYFEGLKSNGVAEVFNDGREILGLTRQGGQIPIFMTLGKIGSSAA 559 Query: 554 ------YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 Y + D++ WK+ + +L A++ AE+ S+ KSDFLA+VSHEIRTPL AIIGF+ Sbjct: 560 SGIDQRYCALLRDMTHWKKVERELDDARREAERASALKSDFLAKVSHEIRTPLNAIIGFA 619 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 EVI +RFGP+GN RY +Y I SG+LV+ +VNDLLD+SKIE+GKM+L FE V + Sbjct: 620 EVIMEERFGPIGNARYKDYLKDIHSSGSLVMSLVNDLLDLSKIEAGKMDLSFEAVDANRI 679 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 V+E +S++Q A+ R++IR S A +P I AD RSV+QI LN+LSNAI FT GGQ+I+ Sbjct: 680 VTECVSIMQPQASSARVVIRLSLAPQLPHIFADERSVRQIVLNLLSNAIKFTQGGGQVIV 739 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVD 786 ST LR+RDTGVGM+ +L+ A++PFGQ P + RG GTGLGLPL KA+V+ Sbjct: 740 STALNDENCAALRIRDTGVGMSEGDLKVALEPFGQAPRA---RGSGGTGLGLPLTKALVE 796 Query: 787 ANMGKFYIFSTPAKGTLIEIIF 808 AN F I S GTL+E+ F Sbjct: 797 ANRASFSIKSKVQDGTLVEVAF 818 >gi|316935647|ref|YP_004110629.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] gi|315603361|gb|ADU45896.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] Length = 1195 Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 244/805 (30%), Positives = 398/805 (49%), Gaps = 60/805 (7%) Query: 40 KKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPR--TVRFTWNIDAHGYLKE 97 EN + EQS + S T + +T P PR +RF W ID G L Sbjct: 408 AAENEHRPATEQSAAPEPAAAEPSATEAPSAVDTMPEPPAPRRHPLRFVWQIDRDGRLAI 467 Query: 98 ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNL 157 S+E + IG + +G R + + L +DP++ + L ++TW G T WP +GT L Sbjct: 468 ASDEFLRLIGPHTAANLGERWSEAAVRLGLDPDHRVTAALATRHTWSGITLQWPADGTAL 527 Query: 158 YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217 +PI+++ LP+ + F+G+RGFG+ + L + H + S Sbjct: 528 RLPIEMSGLPVQDQGGAFAGYRGFGVCRDLAALD----QLAALRRHAPHEPSPRPQPLSA 583 Query: 218 EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK-----TEKYPLLTSEESSLPEQ 272 ++ +D S Q+P + ++ L +VL + P LT E+S Sbjct: 584 DRTSHDDASDQAP----ALDPLLNPLDTPVDTPKNVLPFRPANDTRAPSLTPGENSA--- 636 Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESF----EYLSHRNHPSLSAYFDEGENLTPET--- 325 FH + Q + T + S L PS + + P Sbjct: 637 --FHELA-QQLAARLASETPPTSEAPSIVDDETALEPEMAPSQVPDAPSADRVAPTPSPA 693 Query: 326 ----------VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 +D P+ +Y L YAN +FL + SV +E AGGL L + Sbjct: 694 SGAGARDRLLLDLMPVGVLIYRLDRLLYANSAFLARMGFPSVAALEEAGGLDALYVDSGV 753 Query: 376 SDNNAIK----PVMLYRSDRTCIAAS-ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 D+++ P+ + + A + ARL TI W+ + +LA+ A P +P+ Sbjct: 754 GDSSSSSETGTPITITAAQGGDAAPTEARLFTIAWDGDQALALIC----SAATAPIAVPE 809 Query: 431 NGIEP----EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 P ED + + E +L +IL+ T++G+ + + G I + NR+ LFG Sbjct: 810 LPFAPTTAIEDAPSAVGAANAE----ELGAILDTTAEGVLMFDEAGQISAANRSAEALFG 865 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI--TLGSTKEEKLLSLRII 544 + + ++ + + + YL I S + L+ LG +E L L + Sbjct: 866 HDGDALVAHNLIELFAPESRAAVLDYLDSIKSGRAQSVLDHGLEALGQVREGGLFPLSMT 925 Query: 545 IKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 I + + D+S+ ++ + +LS A+++AE+ + K+D LAR+SHEIR PL AI Sbjct: 926 IGRTRADGPNFFAVFRDLSQVQRTETELSQARRLAERAAGAKADVLARLSHEIRAPLNAI 985 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 IGF+EV+ +RFGPLGN RY++Y I SG V+ IV+DLLD+S+IE+GK++L F V+ Sbjct: 986 IGFAEVMIEERFGPLGNERYVDYMKDIRASGERVIGIVDDLLDLSRIETGKLDLAFASVN 1045 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 L+E V ++++++Q AN +RI+IRTS A+ +P ++AD ++++QI +N++ +IH +GG Sbjct: 1046 LNELVEQSVAVMQPRANRERIIIRTSLAHLLPAVVADAQALRQIIMNLIGTSIHLANAGG 1105 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 Q+I+ST + EV+LR+RDTG + + EL A++PF + P R E G+ L L KA Sbjct: 1106 QVIVSTALSDVGEVMLRIRDTGSRLNDDELAAALQPF-RTPAPSD-RTEAAGVSLSLTKA 1163 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIF 808 +V+AN F+I S P GTLIE++F Sbjct: 1164 LVEANRATFHIKSAPQSGTLIEVVF 1188 >gi|85716111|ref|ZP_01047087.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] gi|85697110|gb|EAQ34992.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] Length = 978 Score = 340 bits (872), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 218/756 (28%), Positives = 368/756 (48%), Gaps = 67/756 (8%) Query: 83 VRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142 +RF W +DA G S+E + IG + G ++++I DP + ++ + T Sbjct: 261 LRFMWRMDAEGRFSFGSDEFTRIIGMRTTSVFGRLWSEITEIFGFDPEGRVAKAVETRET 320 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 W G + LWP +G++ + ++L+ LP+Y R R F G+RGFG+ +R A +R D Sbjct: 321 WSGISLLWPADGSDTGLRVELSGLPVYDRARNFVGYRGFGVCR-DREGLARLAANRRNDF 379 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK--YP 260 FS + + + Q P A D ++T K P Sbjct: 380 LFSETSHPAPANPATSADARPSEPLQQP-----------------AEPDTTVETPKNVLP 422 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + + P N+ + Q L+ + ++ + P +S D Sbjct: 423 FRPPVDLNPPPLTPVENNAFNELAR-QLSARLEGEADDAAAPGTDAEQPGVSEPPDASRE 481 Query: 321 L-----TPET--------VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 TP+ D P +Y G + YANP+FL Y S ++ AGGL Sbjct: 482 QSATEPTPQATLASDNLICDLLPSGVMIYRAGRVLYANPAFLAQVGYGSFQALQEAGGLD 541 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAA-------SARLHTIQWNRENSLAMTFIPFEK 420 LL + D P + + + +ARL + W+ E + A+ Sbjct: 542 ALLVQADMPDAVNTPPTGSHVTVSATPPSGAPQQPITARLFEVSWDGEPANALIC----G 597 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 P +RI E +L +I++ ++GI + + G I + NR+ Sbjct: 598 GTSAP--------------SRIGHANAE----ELATIVDIAAEGILMFDDGGRITACNRS 639 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKL 538 LFG+ +++ + + + YL ++ D L+ + LG +E+ L Sbjct: 640 AETLFGHSGDNLTQHNLVDLFAPESQGAVRDYLKSLMHDDDASLLDHGREVLGRAREDGL 699 Query: 539 LSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + L +I+ + + D+S+ K+ + +LS A++ AE+ ++ K+D LAR+SHEIR Sbjct: 700 IPLSMIMGRTQAEGPNFFAVFRDLSQSKKAETELSQARRQAERAANAKADVLARISHEIR 759 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 PL +IIGF+EV+ +++FG LGN RY+EY I SG ++ ++DLLD+S+IE+GK++L Sbjct: 760 APLNSIIGFAEVMIDEKFGSLGNERYVEYMKDIRASGERIIAFIDDLLDLSRIETGKLDL 819 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717 F +L+E V + ++++Q AN +RI+IRTS A+ +P ++AD ++++QI LN++ N+IH Sbjct: 820 AFVNQNLNEIVEQCVAVMQPQANRERIIIRTSLAHTLPPVVADAQALRQITLNLIGNSIH 879 Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 +GGQ+I+ST T +V LRVRDTG G++ EL A +PF + P + G+ Sbjct: 880 LANAGGQVIVSTAITDFGDVALRVRDTGQGLSENELAAATEPF-RTPAPSDQASKSAGVS 938 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 L L KA+V+AN +F+I + P GTLIE++F D Sbjct: 939 LSLTKALVEANRAQFHIKTGPHSGTLIEVVFAQTDA 974 >gi|307947441|ref|ZP_07662774.1| PAS/PAC sensor signal transduction histidine kinase [Roseibium sp. TrichSKD4] gi|307769259|gb|EFO28487.1| PAS/PAC sensor signal transduction histidine kinase [Roseibium sp. TrichSKD4] Length = 1749 Score = 340 bits (871), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 216/685 (31%), Positives = 350/685 (51%), Gaps = 89/685 (12%) Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250 N P+AL + S + + K + +K+K +F P L + + +E Sbjct: 1081 NGPQALDHK--DIESAVKSLAKSFDAKKKDKASLF------PDLEDQTQQVGQSESETDA 1132 Query: 251 DDVLKTEKYPLLTSEESSLP-----EQED----FHTINLNQYTKKQYFGTLQNNSKESFE 301 DDV+ + + T +++ P E ED F ++ T ++ ++ E Sbjct: 1133 DDVVSGDNFE--TDQDNDAPIDPVDEAEDELDFFKETAAHKETDEEAEAVADQDTAEIIP 1190 Query: 302 YLSHRNH-----------PSLSAY-----------------FDEGENLTPETV------- 326 +S R H P L+A+ FDE + L PE + Sbjct: 1191 LVSARPHLVPVDTSNLSRPDLAAFKTIAEALGARFEGDIAGFDELDMLDPEGILPPETEP 1250 Query: 327 ---------DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL---DAPK 374 D+ PI + ++ +AN + L + Y + + AGGL L D Sbjct: 1251 SGPIDPDLLDRLPIGIAIARDRDVLFANETLLSVLGYPTHRHLTEAGGLEALFAEEDEDS 1310 Query: 375 LSDNNAIKPVM-----LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 D ++ + R+D + + AR+H++ WN L ++ +P + E + Sbjct: 1311 FPDAEGMEGTVDGTLKARRADGSLLPVDARMHSVPWNGGQGLMISIVP-----RAAEAVA 1365 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + + + + ++ +L +ILE +DG+ +++R G+I+ NR+ LF Sbjct: 1366 SGSV------SSTELQAAQTQIAELDTILETATDGVLVLDRNGVIIKANRSAEALFNANR 1419 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKK 547 D++ P +L + YL ++ + L + LG K L+ L + I + Sbjct: 1420 ADMIGVPLFDYLAPESHRGATDYLDGLVRNGVASVLNDGREVLGLLKSGGLIPLFMTIGR 1479 Query: 548 LPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 + + + DI++WK + +L+ AK+ AE +S KSDFLA++SHEIRTPL AII Sbjct: 1480 INHDGEDRKFCAVLRDITQWKTAEEELTQAKRQAENANSQKSDFLAKISHEIRTPLNAII 1539 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 GFSEV+ ++RFG +GN RY EY I SG+ ++ ++NDLLD+SKIE+GK++L F VS+ Sbjct: 1540 GFSEVMMDERFGEIGNERYKEYLKDIRTSGSHIMSLINDLLDLSKIEAGKLDLQFTAVSI 1599 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 + V+E ++++Q AN +R++IR S +++P ++AD RS++QI LN+LSNAI F SGGQ Sbjct: 1600 KDIVNECVAIMQPQANRERVIIRASLPDSVPNVVADPRSLRQIVLNLLSNAIKFNKSGGQ 1659 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 I+ST EV+LRVRDTG GM+ +L A++PF Q+ ++ G GTGLGLPL KA+ Sbjct: 1660 AIVSTAFEDTGEVVLRVRDTGTGMSAKDLSAALEPFRQLHTARH--GSGTGLGLPLTKAL 1717 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809 V+AN F I STP +GTL+EI FP Sbjct: 1718 VEANRASFRIDSTPDQGTLVEISFP 1742 Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 79/142 (55%), Gaps = 4/142 (2%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 TD + + +S+++ ++ FVF R VRF W +D +S+E +T+G + ++ Sbjct: 350 TDASPDPLSSSD----DDGFVFQQKRRPVRFAWKMDLEQRFTFVSDEFGQTLGPSSTDIL 405 Query: 115 GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174 G +V ++ +D I L R++TW GKT WP+ G + VP+D+AALP + R+R+ Sbjct: 406 GKTWAEVRELYGVDGRAKIAQALDRRDTWSGKTVYWPVSGEAVRVPVDMAALPAFDRDRQ 465 Query: 175 FSGFRGFGIVHVNRVDNDPRAL 196 F G+RGFG+ DP + Sbjct: 466 FEGYRGFGVCRTADAKEDPDGV 487 >gi|323136816|ref|ZP_08071897.1| histidine kinase [Methylocystis sp. ATCC 49242] gi|322398133|gb|EFY00654.1| histidine kinase [Methylocystis sp. ATCC 49242] Length = 883 Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 220/732 (30%), Positives = 359/732 (49%), Gaps = 32/732 (4%) Query: 81 RTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ 140 R RF W DA G +I+ L +G + ++G + +V+ +D + + + Q Sbjct: 173 RAPRFLWKTDAVGRFIDITHVLADVVGEESADILGRPVDEVARSFSLD--SALTQAIAAQ 230 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 +W G WP+E + VP+ L ALP +R F+GF+G+G++H++R P G++ Sbjct: 231 KSWSGVDVDWPLENLSERVPMTLGALPTTDSDRRFAGFQGYGVLHLSRAYVAP---GQQA 287 Query: 201 DKKFSHLHEIKKGHSSVEK-EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + E +K S E+ DI + LR + E D Sbjct: 288 GAGAAPPPEKEKPPPSAPAPERDDIGYRADNVVPLRPSAATPRIEEPRDPAADAT----- 342 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 L SE+S+ E + + GT + +E+ + + D Sbjct: 343 -LTASEQSAF--DEIARALLAGDASGDDAAGTPADALEETESAPAEAEPAAAPRARD--- 396 Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 E +D+ P+ + + + N + L Y + GGL+ + + N Sbjct: 397 RTVEEVLDRLPVGVLIARGADTLFVNRTLLDYLGYADRAAFDTYGGLARMFFGRGPGEPN 456 Query: 380 A-IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE-PED 437 P + SD + L T++W E A T + + + P ++ + + Sbjct: 457 GHAGPAAVQSSDGERLDVDVHLQTLEWEGE---AATLLTLRRNHHRPRGPDESALALARE 513 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 ++ R+ + + +++ ++LE+ IAI+ +G+I S + LFG P Sbjct: 514 MEARLARVRANNNLLR--AVLESDGSAIAIVCDDGLIESATAGFAALFGAETGAFDGLPL 571 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 + ++ + ++ + T T + + + +++LP + Sbjct: 572 ASLFAAQEGRTIAGLISRV------KSEQNETARLTARARGVPIEASLQRLPVGAGKICV 625 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + ++L A+ AE S+ KSDFLARVSHEIRTPL AIIGF+EV+ +RFGP Sbjct: 626 RLKEPAADRRNDELEAARVAAEHASAAKSDFLARVSHEIRTPLNAIIGFAEVMMEERFGP 685 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 +G+ RY EY + SG VL +VNDLLD+SKIE+GK+ L FE V + +SE +S++Q Sbjct: 686 IGSERYKEYLKDVHASGTHVLSLVNDLLDLSKIEAGKLELSFERVDANAIISECVSIMQT 745 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 AN+ R+++R + A +P I AD RS+KQI LN+LSNA+ F GGQ+I+ST T V Sbjct: 746 QANQGRVVVRLALAQRLPPIRADERSLKQILLNLLSNAVKFNEPGGQVIVSTALTEAGYV 805 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 ++RV+DTGVGM++ E+E A++PF QI S+++R GTGLGLPL KA+++AN F I S Sbjct: 806 VIRVKDTGVGMSDDEVETALEPFKQIATSRKVR--GTGLGLPLTKALIEANHASFTIKSR 863 Query: 798 PAKGTLIEIIFP 809 +GTLIE+ FP Sbjct: 864 KNEGTLIEVAFP 875 >gi|299132031|ref|ZP_07025226.1| PAS/PAC sensor signal transduction histidine kinase [Afipia sp. 1NLS2] gi|298592168|gb|EFI52368.1| PAS/PAC sensor signal transduction histidine kinase [Afipia sp. 1NLS2] Length = 1041 Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 227/763 (29%), Positives = 362/763 (47%), Gaps = 60/763 (7%) Query: 83 VRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142 +RFTW +DA G + E IG G +V+ L +DP N + + ++T Sbjct: 295 LRFTWAMDAEGRFSFGAGEFTHLIGAQTTAAFGRLWSEVNAALALDPENRVAHAIATRDT 354 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH----VNRVDNDPRALGK 198 + WP +G +P++++ LPI+ R+ F+G+RGFGI + RV A + Sbjct: 355 FSNILLQWPADGLAGRLPVEMSGLPIFGRDHAFAGYRGFGICRDLDGLTRV-----AAQR 409 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 R D F + +E S + P P ++ E + Sbjct: 410 RHDTLFG------SSPAPLETPAPTAASPEPPAPEATAPQTETAFGEPAETEGSETPPNV 463 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--------SHRNHPS 310 P + + + P N Q +Q L++ ++ L S P Sbjct: 464 VPFRAANDDARPPVLTPGENNAFQELARQLSERLEHETERRLSALHEEEQANDSSAAQPH 523 Query: 311 LSAYFDEGEN--------LTP--------ETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354 F+ GE+ L+P D+ P VY L YAN +FL T Y Sbjct: 524 DDMIFESGEDEIEVPPAQLSPVARAPQNTSLYDQLPSGVLVYRADRLLYANNAFLAATGY 583 Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA----SARLHTIQWNRENS 410 +++ + GGL L ++D +A + + A ARLHT+ W EN+ Sbjct: 584 ATLNALNKDGGLGALYVGSGVADTDASGEGTPIKVSTVSMGAHQALDARLHTVDWEGENA 643 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470 LA+ P Q +P EP + + IE +L +ILE T++G+ + + Sbjct: 644 LALILSPPVAPAQTDYAIPV-AAEP------LPRAGDLIESDELATILETTAEGVMMFDS 696 Query: 471 EGIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLE-- 526 +G I++ NR+ LFG D L +F ++ +V++ YL I S ++ E Sbjct: 697 DGGIIACNRSAEALFG---RDGLEGHNLIELFAPESQRAVLD-YLEGIKSGAMQGLFEQG 752 Query: 527 KITLGSTKEEKLLSLRIIIKKL-PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 + LG + ++L + + + P Y D K+ E+ ++ K Sbjct: 753 RDVLGRAPDGGAMALSVTMGRTRPDRPRYFAVFRDKPPAAPALRAPDQDKRADERAANAK 812 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 +D LAR+SHE+R P+ AIIGF++V+ +RFG LGN RY +Y I SG V+ I++D+L Sbjct: 813 ADLLARLSHEVRAPVNAIIGFADVMIEERFGALGNERYADYMKDIRASGERVISIIDDML 872 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705 D+S+IESGK++L F L+ V + + ++Q AN +RI+IR+S + +P I AD R+++ Sbjct: 873 DLSRIESGKLDLEFASQDLNALVEQCVGVMQPQANRERIIIRSSLTHGLPNIQADARALR 932 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 QIAL ++ AI +GGQ+I+ST EV LR+RDTG GM + E+ AM PF + P+ Sbjct: 933 QIALTLIGCAIRLANAGGQVIVSTALNDLGEVALRIRDTGHGMNDNEIAAAMAPF-RTPS 991 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 G G L LAKA+V+AN G+F++ S+P GTLIE++F Sbjct: 992 PTDEVAAGNGANLSLAKALVEANRGRFHLRSSPNTGTLIEVVF 1034 >gi|75675205|ref|YP_317626.1| Signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] gi|74420075|gb|ABA04274.1| PAS/PAC sensor signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] Length = 1005 Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 220/762 (28%), Positives = 379/762 (49%), Gaps = 75/762 (9%) Query: 83 VRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142 +RF W +DA G S+E +TIG G ++SD+ +DP + ++ +NT Sbjct: 274 LRFMWRMDAEGRFSIGSDEFTRTIGMRTATGFGRLWSEISDVFGLDPEGRLARAVQTRNT 333 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 W G T LWP++G++ + ++L+ LPIY R R F G+RGFG+ +R A +R + Sbjct: 334 WSGVTLLWPVDGSDARLRVELSGLPIYDRTRNFVGYRGFGVCR-DREGLARLAASRRSEF 392 Query: 203 KF---SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV-----------SSLTEYYA 248 F SH + +S+ +K + P + V LT Sbjct: 393 LFSETSHPAPVDSANSADDKPSEPLQQPTEPDTTVETPKNVLPFRPPVDLNPPPLTPVEN 452 Query: 249 HKDDVLKTEKYPLLTSE-ESSLPE--QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305 H + L + L E E++ PE E + T++Q + S E + Sbjct: 453 HAFNELARQLSARLEGEPEAARPEDNAEPPVAAGASAITREQA------DEPSSPEQPAP 506 Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365 R + A + +L P V ++ G YAN +FL Y+S++ ++ AGG Sbjct: 507 RR--TTVARDSQILDLIPSGV-------MIHRAGRALYANAAFLAQVGYQSLETLQEAGG 557 Query: 366 LSTLLDAPKLSDNNAIK--------------PVMLYRSDRTCIAA---SARLHTIQWNRE 408 L LL ++ + + ++ PV + + + +ARL + W+ E Sbjct: 558 LDALLVEARMVEADPVEAALPDAVGTPPTGSPVTVSVTPPSGAPQQPLAARLFAVSWDGE 617 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468 + A+ +R+ E +L +I++ ++G+ + Sbjct: 618 PAHALI------------------CGGASAPSRVGHATAE----ELATIVDGAAEGLLMF 655 Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-K 527 + G I + N + LFG P + + ++ + + YL + D Q + Sbjct: 656 DDGGNITACNHSAETLFGLPGDTLTQRNLVDLFAPESQDAVRDYLKSLTDDDANQLDHGR 715 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 +G E+ L+ L + + + + + D+S+ K+ + +LS A++ AE+ ++ K+ Sbjct: 716 EVVGRMGEDGLIPLSMTMGRTQAAGPNFFAAFRDLSQSKKTETELSQARRQAERAANAKA 775 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 D LAR+SHEIRTPL +IIGF+EV+ +++FG LGN RY+EY I SG ++ ++DLLD Sbjct: 776 DVLARISHEIRTPLNSIIGFAEVMIDEKFGSLGNERYVEYMKDIRASGERIISFIDDLLD 835 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706 +S+IE+GK++L F +L++ V + ++++Q AN +RI+IRTS A+ +P I+AD ++++Q Sbjct: 836 LSRIETGKLDLAFVNQNLNDIVEQCVAVMQPQANRERIIIRTSLAHTLPAIVADAQALRQ 895 Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 I LN++ N+IH +GGQ+I+ST +V LRVRD+G ++ EL A +PF P S Sbjct: 896 ITLNLIGNSIHLANAGGQVIVSTAVNDFGDVALRVRDSGHSLSEDELAAATEPFRTPPPS 955 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 Q + G+ L L KA+V+AN +F+I + P GTLIE++F Sbjct: 956 DQA-SKSAGVSLSLTKALVEANRAQFHIKTGPHSGTLIEVVF 996 >gi|296448146|ref|ZP_06890045.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] gi|296254327|gb|EFH01455.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] Length = 899 Score = 330 bits (847), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 225/740 (30%), Positives = 354/740 (47%), Gaps = 54/740 (7%) Query: 81 RTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ 140 R RF W DA G + ++ L +G + G + + L +DP + ++L + Sbjct: 195 RPERFIWRTDAEGRVVVVTGALADVVGRDNSDIAGRSFVETARRLRLDPRGRLDEVLASR 254 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 +W G WP++G VP+ L ALPI+ R F GF+G+G++HV R+ Sbjct: 255 RSWSGVELDWPLQGGGARVPVTLGALPIFDDARRFGGFQGYGVLHVGRL----------- 303 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA--HKDDVLKTEK 258 +F + + ++ + KV L A +D Sbjct: 304 --RFEPPAAEPAPPAEAPEAAAELPEAAP---LVSTGGKVVPLRPQLALPRFEDGAAAAG 358 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN--HPSLSAYFD 316 PL SE ++ E + T K ++E E + P D Sbjct: 359 EPLTASERAAF--DEISRALGAGARTGK-------GPARELIEAVGQATGCEPPAWPESD 409 Query: 317 EGENL----TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 E E + +D+ P+ V YAN + L Y + + GG + L Sbjct: 410 EAEPIGLARARALLDRLPVGVLVARGAQALYANRTLLDYLGYPDLTALAAEGGAARLFVG 469 Query: 373 PKLSD--NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 P+L D + L D + A ARL I W+ + +T A E Sbjct: 470 PRLQDASEGGANVLELRGEDGERLDADARLQAIDWDGGPATLVTLRSARPAAGAAEAARL 529 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 +E E + +R+ E+E +L + LEAT A+++R+G I S + +L G E Sbjct: 530 GALENE-----LARRQSEME--ELRTTLEATGAAYAVLDRDGRIRSASGGFGRLLGEEPE 582 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 + +P + + + YL R+ S + K +L++ + + Sbjct: 583 ALAGEPLAALFAEADRAAVADYLRG------REPGADGLRASVRARKG-ALQLTLVGIGA 635 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + ++ + L A++ AE+ ++ K+DFLA+VSHE+RTPL AIIGF+EV+ Sbjct: 636 EQRRCAVLRELGPRRGADEALEAARREAERANAAKTDFLAKVSHEVRTPLNAIIGFAEVM 695 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +RFGPLG+ RY EY I SG VL +VNDLLD+SKIE+GKM L E + + ++E Sbjct: 696 MEERFGPLGSERYKEYLKDIHTSGLHVLSLVNDLLDLSKIEAGKMELDVERIDANAMIAE 755 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 +S++Q AN R+LIR S +PR+LAD RS++QI LN+LSNA+ F +GGQ+I+S+ Sbjct: 756 CVSIMQPQANRSRVLIRLSLWPRLPRVLADGRSLRQILLNLLSNAVKFNEAGGQVIVSSA 815 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANM 789 T V++RV+DTG+GM+ E+E A++PF Q+ P+ + GTGLGLP+ KA+++AN Sbjct: 816 LTDAGYVVIRVKDTGIGMSESEIETALEPFRQVGPH----KASGTGLGLPVTKALIEANR 871 Query: 790 GKFYIFSTPAKGTLIEIIFP 809 F I S +GTL+E+ FP Sbjct: 872 ASFSITSRRNEGTLVEVAFP 891 >gi|146338328|ref|YP_001203376.1| two-component hybrid sensor and regulator [Bradyrhizobium sp. ORS278] gi|146191134|emb|CAL75139.1| Two-component hybrid sensor and regulator [Bradyrhizobium sp. ORS278] Length = 1151 Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 228/792 (28%), Positives = 378/792 (47%), Gaps = 73/792 (9%) Query: 83 VRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142 +RF+W IDA G S+E + IG + +G +++ L +DP + + + T Sbjct: 356 LRFSWQIDAEGRFSLGSDEFARLIGPESAGHLGQPWPEIASSLGVDPEGRVSAAIATRET 415 Query: 143 WYGKTTLWPIE-GTNLYVPIDLAALPIYSRNREFSGFRGFGIVH----VNRVDNDPRA-L 196 W +WP G L V +L+ LP+++ ++ +SG+RGFG+ +NR+D R+ Sbjct: 416 WSNLVVIWPAAAGERLAV--ELSGLPVFTADKVYSGYRGFGVCRDIDALNRLDAVRRSDA 473 Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYD-IFSQQSPPPH--LRMKNKVSSLTEYYAHKDDV 253 G + + + + D + PPP + ++ +S+ H D V Sbjct: 474 GPSDAPDADDIDDAPPDFVASRPAQSDHAPAADVPPPQYIVAAPSRDASIAAEAPHIDGV 533 Query: 254 ---LKTEKYPLLTSEESSLP-----EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS- 304 P ES LP E FH L + + G ++N ++ + L Sbjct: 534 GLEAAGNVVPFRAPGESKLPALTPVENNAFH--ELARQLSARLEGEIRNPAELAGPTLEP 591 Query: 305 -----------HRNHPSLSAYFDEGEN------LTPET-------------VDKCPIPFF 334 H++ ++ N L PE +D P Sbjct: 592 AARVSDPFGPPHQDASGMTDVAGAQGNGLQTDWLAPEVPPAHGDSQRDRILLDLLPTGML 651 Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL----SDNNAIKPVMLYRSD 390 +Y L YANP+F Y + +E AGGL L P S A PV + +D Sbjct: 652 IYRLDRLLYANPAFFKQMGYADLPTLEQAGGLDALYVEPGAPSGTSRPEAGTPVTISAAD 711 Query: 391 RTC---IAASARLHTIQWNRENSLAMTFIPFEKANQF--------PENMPQNGIEPEDVD 439 + I A ARL TI W+ + + A+ F P P P P V Sbjct: 712 GSTSEEIKAEARLFTITWDGDTAHALIFAPAPGPAAALPATVETPPVQAPAPSATPLVVA 771 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + E E L +IL+ T++GI + + G I + NR+ LFGY ++ R+ Sbjct: 772 PPPSAGHAEAE--DLAAILDVTAEGILMFDAGGNIHACNRSAEALFGYDGVELARRNLIE 829 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC-YSL 556 + ++ YL + L+ + LG + + L I I + + Sbjct: 830 LFAPESARLVLDYLDSVQQAGASGALDQGREVLGKIAQGGAIPLSITIGRTRADGPNFFA 889 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 D+S+ ++ +++L HA+++A++ ++ K+D LAR+S E+R PL AIIGF+EV+ +RFG Sbjct: 890 VFRDLSQLRRGESELLHARRVADRAANAKADMLARISQEVRAPLNAIIGFAEVMIGERFG 949 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 LGN RY EY I SG V+ +++DLL++S+IE+GK+ L F +L+E V ++++Q Sbjct: 950 TLGNARYAEYMKDIRASGERVVSLIDDLLELSRIETGKLELAFTAQNLNELVESCVAVMQ 1009 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 AN RI+IRTS + +P ++AD R+++QIA N++S +I +GGQ+I+ST + E Sbjct: 1010 PQANRARIIIRTSLSQALPPVIADTRALRQIATNLISASISLANAGGQVIVSTAMSDFGE 1069 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V+LRVRDTG + + + A++PF + + +G+GL L L KA+V+AN +F+I + Sbjct: 1070 VVLRVRDTGHALNDQAVAAALEPF-RATAGAEFGADGSGLSLSLTKALVEANRAQFHIKA 1128 Query: 797 TPAKGTLIEIIF 808 P GTL+E++F Sbjct: 1129 APKSGTLMEVVF 1140 >gi|118593594|ref|ZP_01550971.1| PAS domain protein [Stappia aggregata IAM 12614] gi|118433812|gb|EAV40472.1| PAS domain protein [Stappia aggregata IAM 12614] Length = 1563 Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 197/506 (38%), Positives = 294/506 (58%), Gaps = 27/506 (5%) Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL--DAPKLSD- 377 + P +D+ PI + + YAN + L + Y+S+ + AGGL L DA +L D Sbjct: 1061 IDPSLLDRLPIGIAIAHDREVLYANKALLRMLGYRSIAALSEAGGLEALFIDDAEELPDE 1120 Query: 378 --NNAIKPVMLYR-SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + + M R SD + A +H++ WN L ++ E+ + Sbjct: 1121 GMDGEVDETMKMRLSDGGVLNVDAHMHSVPWNGSRGLMISIT--ERKVKPAPAAAAPSSP 1178 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + R ++ ++ +ILE +DG+ ++++ G IL N + LF D++ Sbjct: 1179 NFFAEVRAELDSARNQIAEMDTILETATDGVLVLDQNGTILKVNGSAEALFSANRSDMIG 1238 Query: 495 KPFTVFLEQNTPSVMNHYL--------TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 P T FL + YL IL+ D R+ L K+ G L+ L + I Sbjct: 1239 APLTEFLAPESHRAAADYLDGLSRNGVASILN-DGREVLGKVPTGG-----LIPLFMTIG 1292 Query: 547 KLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 ++ + Y + DI++WK + +L+ AK+ AE SS KSDFLA++SHEIRTPL AI Sbjct: 1293 RISGTKDDVKYCAVLRDITQWKTAEEELTQAKRQAENASSQKSDFLAKISHEIRTPLNAI 1352 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 IGFSEV+ +RFGP+GN RY +Y I SG+ ++ ++NDLLD+SKIE+GK++L F VS Sbjct: 1353 IGFSEVMMEERFGPIGNDRYKDYLKDIRTSGSHIMSLINDLLDLSKIEAGKLDLKFSAVS 1412 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 ++ ++E ++L+Q AN +R++IR S ++P ++AD RS++QI LN+LSNAI + SGG Sbjct: 1413 TNDVINECVALMQPQANRERVIIRASLPESVPDVVADPRSLRQIVLNLLSNAIKYNKSGG 1472 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 Q+I+ST SN EV LRVRDTG GMT+ +L A++PF Q+ S RG GTGLGLPL KA Sbjct: 1473 QVILSTALESNGEVALRVRDTGTGMTSKQLAAALEPFRQLHTSS--RGGGTGLGLPLTKA 1530 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809 +V+AN F+I STP +GTL+EIIFP Sbjct: 1531 LVEANRASFHIDSTPDQGTLVEIIFP 1556 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 47/118 (39%), Positives = 70/118 (59%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128 D + FVF P R VRF W +D +S+E + +G + ++G+ +V++ +D Sbjct: 387 DQNDDFVFQPRRRPVRFAWKMDIDQRFTFLSDEFAEVLGPSSTDIVGLTWQEVAEAFDLD 446 Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186 P HI L R++TW GKT WP+ G L VP+D+AALP + RNR+F G+RGFG+ Sbjct: 447 PRGHIARALDRRDTWSGKTIDWPVSGAALRVPVDMAALPAFDRNRKFEGYRGFGVCRT 504 >gi|170741139|ref|YP_001769794.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] gi|168195413|gb|ACA17360.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] Length = 1000 Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 173/494 (35%), Positives = 280/494 (56%), Gaps = 23/494 (4%) Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL---DAPKLS----- 376 +D+ PI V+ + AN + L L Y+S + + AGG +L D L+ Sbjct: 514 VLDRLPIGILVHQGEEVLLANRALLCLADYESAEALTAAGGAGSLFRGRDPASLAVGEGD 573 Query: 377 -DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 A PV+L + +A L ++W + + + PE P + Sbjct: 574 PAGGADHPVVLATRTGEALPVAAVLTPVEWGGAPASLLAL------RRLPEEDPARHLRA 627 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 +++ + + E + + ++L+A +DG+ ++ G +++ N+ + LFG+ ++ + Sbjct: 628 AELE----RARQEARLRESEAVLDAVTDGVVTLDERGRVIALNKGAAALFGHEPREVSGE 683 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 TV Q+ + L + + T + + E +L+L + +S Sbjct: 684 DLTVLFAQDGRPAIRAALERARAGEPAST----EVAAEGGEPILALTLAPLAQEEPRRFS 739 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + D+S ++ + +L AK+ AE SS KSDFLA +SHEIRTPL AI+GF+EV+ ++F Sbjct: 740 VLLRDVSAARRTEAELLRAKRAAEAASSQKSDFLATISHEIRTPLNAILGFTEVMMEEQF 799 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GP+GN RY +Y I SG V+ +V DLLD++KIE+G ++LHF V L++ V ++SL+ Sbjct: 800 GPIGNERYRDYLRDIRSSGEHVVSLVTDLLDLAKIEAGHLDLHFTGVVLNDLVGASVSLM 859 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 Q A +R+++RTSFAN + +L D RS++Q ALN+++NAI FT +GGQ+I+ST T Sbjct: 860 QPQAARQRVVVRTSFANGLRPVLGDQRSLRQAALNLIANAIKFTDAGGQVIVSTAMTDRG 919 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V LRVRDTG+GMT E+E A++PF Q+ +Q RG GTGLGLPL KA+V+AN G + Sbjct: 920 GVALRVRDTGIGMTPDEVETALQPFRQVATAQNRRGRGTGLGLPLTKALVEANRGTLRVS 979 Query: 796 STPAKGTLIEIIFP 809 S +GTL+E++FP Sbjct: 980 SRKHEGTLVEVLFP 993 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 3/107 (2%) Query: 83 VRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142 +RF W DA G + E +E L +G L ++D + ++ + L + T Sbjct: 154 MRFLWRSDAEGRIVEATEALTGLVGRTPLGRSWAEL--LADTVQ-GTSDDLAAALAARRT 210 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189 + LW +GT V +DL+ P R F+GF GFG++ +RV Sbjct: 211 FRALPVLWRFDGTERGVAVDLSGAPRLGEGRAFAGFSGFGVIRPDRV 257 >gi|220925051|ref|YP_002500353.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium nodulans ORS 2060] gi|219949658|gb|ACL60050.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium nodulans ORS 2060] Length = 969 Score = 318 bits (814), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 174/495 (35%), Positives = 285/495 (57%), Gaps = 19/495 (3%) Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL---DAPKL 375 E+ + +D+ P+ V+ ++ +AN L L Y + +D+ AGG L D L Sbjct: 483 EDPSARILDRLPLGVLVHRGDDVLFANRRLLGLAGYGTAEDLSQAGGAGALFKGRDPASL 542 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 A PV L + + + L T++W+ + + + P+ P + Sbjct: 543 PPTEAGYPVCLATREGGTLPVAVTLTTVEWSGAPASLLLL------RRLPDADPAQDLAA 596 Query: 436 EDVD-TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 ++D R EIE ++L++ +DG+ ++ G IL N+ LFG+ ++ Sbjct: 597 AELDLARQQANLREIE-----AVLDSMTDGVVTLDGSGRILDFNKGAKALFGHEPREVTG 651 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554 + F++ ++ + L S + ++E I + E +L+L + + + Sbjct: 652 EDFSLLFTPDSRPAVQAALQRARSGE-PASIEAI---GERREGILALTVAPIAGEGTRRF 707 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 S + D++ ++ + +L AK+ AE +S KSDFLA +SHEIRTPL AI+GF+EV+ ++ Sbjct: 708 SALLRDVTAARRTEAELLRAKRAAEAANSQKSDFLATISHEIRTPLNAILGFTEVMMEEQ 767 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 FGP+GN RY +Y I SG V+ +V DLLD++KIE+G ++L F V+L++ V ++SL Sbjct: 768 FGPIGNERYRDYLRDIRTSGEHVVSLVTDLLDLAKIEAGHLDLSFTGVALNDLVGASVSL 827 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 +Q A +R+++RTSFA+ + +LAD+RS++Q ALN+++NAI FT +GGQ+I+ST T Sbjct: 828 MQPQAARQRVVVRTSFASGLKPVLADMRSMRQAALNLIANAIKFTDAGGQVIVSTAMTDR 887 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V LRVRDTG+GMT E+E A++PF Q+ +Q RG GTGLGLPL KA+V+AN G + Sbjct: 888 GGVALRVRDTGIGMTPDEIETALQPFRQVATAQNRRGRGTGLGLPLTKALVEANRGTLRV 947 Query: 795 FSTPAKGTLIEIIFP 809 S +GTL+E++FP Sbjct: 948 TSRKHEGTLVEVLFP 962 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 3/107 (2%) Query: 83 VRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142 +RF W DA G L E + L +G +G ++ + ++ + L+ T Sbjct: 162 IRFLWRSDAGGRLVEATPSLADAVGA---SPVGQHWDELLAGTVLTQDDRLAAALEEHRT 218 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189 + W + ++ V +DL+ P R F+GF GFG++H +RV Sbjct: 219 FRAVPVRWRLGESDQGVQVDLSGAPRLGEGRAFAGFSGFGVIHPDRV 265 >gi|254500165|ref|ZP_05112316.1| hypothetical protein SADFL11_201 [Labrenzia alexandrii DFL-11] gi|222436236|gb|EEE42915.1| hypothetical protein SADFL11_201 [Labrenzia alexandrii DFL-11] Length = 1417 Score = 316 bits (810), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 203/564 (35%), Positives = 318/564 (56%), Gaps = 37/564 (6%) Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH--PSLSAYFDEGENLTPET 325 S PE++ F I + + G L+ + + +R P L E + P Sbjct: 862 SRPERQAFRKIA--EALGARLEGDLEGWDEPDADETDNREEDLPDLPPEVPEAGPIDPSL 919 Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL--DAPKLSDNNA--- 380 +D+ PI + ++ YAN + L + Y ++ ++ AGGL L +A L D + Sbjct: 920 LDRLPIGIAIAHDRDVLYANKALLSILGYGAISELTEAGGLEALFIDEAEDLPDADGMVG 979 Query: 381 -IKPVMLYR-SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP--- 435 + M R +D + A +H++ WN L ++ E+ N+ P G P Sbjct: 980 ELDETMKVRLADGGVRSVDAHMHSVPWNGSRGLMISIT--ERFNK-PAPAASEGAAPNFF 1036 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 ++V + ++ + +I M+ +ILE +DG+ +++ G IL N + LF +++ Sbjct: 1037 KEVRSELDGARTQISEME--TILETATDGVLVLDERGTILKVNGSAEALFSASRGEMIGS 1094 Query: 496 PFTVFLEQNTPSVMNHYL--------TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 PF FL + YL IL+ D R+ L K+ G L+ L + + + Sbjct: 1095 PFIEFLAPESHRSAEDYLDGLARNGVASILN-DGREVLGKVPTGG-----LIPLFMTMGR 1148 Query: 548 L--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + + + + + DI++WK + +L+ AK+ AE SS KSDFLA++SHEIRTPL AIIG Sbjct: 1149 IGDKDDTKFCVVLRDITQWKTAEEELTQAKRQAENASSQKSDFLAKISHEIRTPLNAIIG 1208 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSEV+ +RFGP+GN RY +Y I SG+ ++ ++NDLLD+SKIE+GK +L F VS + Sbjct: 1209 FSEVMMEERFGPIGNDRYKDYLKDIRTSGSHIMSLINDLLDLSKIEAGKQDLKFSAVSAN 1268 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + ++E ++L+Q AN +R++IR S + +P I+AD RS++QI LN+LSN I + SGGQ+ Sbjct: 1269 DIINECVALMQPQANRERVIIRASLPDAVPNIVADPRSLRQIVLNLLSNGIKYNKSGGQV 1328 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 I+STT N EV +RVRDTG GM +L A++PF Q+ ++ RG GTGLGLPL KA+ Sbjct: 1329 ILSTTLEPNGEVSIRVRDTGSGMNPKQLAAALEPFRQVHTAR--RGGGTGLGLPLTKALA 1386 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 +AN +F+I STP +GTL+EI FP Sbjct: 1387 EANRAQFHIDSTPDQGTLVEITFP 1410 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 80/161 (49%), Gaps = 3/161 (1%) Query: 71 ENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN 130 E FVF P R VRF W +D +S+E +G + ++G+ +V++ +DP Sbjct: 343 EPEFVFQPGRRPVRFAWKMDISQRFTFLSDEFANVVGPASADIVGLTWAEVANRFDLDPR 402 Query: 131 NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD 190 I L R++TW GKT WP+ L VP+D+AALP + RNR F G+RGFG+ D Sbjct: 403 GSIARALDRRDTWSGKTVDWPVTDAALRVPVDMAALPAFDRNRTFEGYRGFGVCRA--AD 460 Query: 191 NDPRALGKRLDKKFSHLHE-IKKGHSSVEKEKYDIFSQQSP 230 P A L + E + G S ++E ++ P Sbjct: 461 AKPGARIAALSPAMAAFDEHLDDGQSEADEEDAHASNETEP 501 >gi|298290623|ref|YP_003692562.1| PAS/PAC sensor signal transduction histidine kinase [Starkeya novella DSM 506] gi|296927134|gb|ADH87943.1| PAS/PAC sensor signal transduction histidine kinase [Starkeya novella DSM 506] Length = 874 Score = 316 bits (810), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 183/490 (37%), Positives = 284/490 (57%), Gaps = 18/490 (3%) Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 +D+ P+ + +L YAN + L T + + +E AGGL+TL A + + + + Sbjct: 391 VLDRLPLAMLAFRGDHLLYANRALLEWTGHADLAALEAAGGLATLFGAQRAGGDEESRAL 450 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 L + I ARL + W E AM ++ E + Q + Sbjct: 451 TLLTATGHGITVEARLMSAPW--EGGTAMLYVLHRLDAVTDERIRQ---------AELAL 499 Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 R+ E +L +IL+ +DG+ +I++ G ILS N LFG+ D+ + T+ L Sbjct: 500 RQAENAERELRAILDTATDGVVLIDKAGTILSMNHPAEALFGFNAGDVQGEAITLLLAPE 559 Query: 505 TPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKL---PFSSCYSLTMH 559 + YL + S + L + +G +E L+ L + + ++ P C L Sbjct: 560 SHRAAIDYLDGLASNGVASVLNDGREVIGRVREGGLIPLFMTMGRIGDDPTKFCAVL--R 617 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI++WK+ + +L+ AK +AE+ + KSDFLA++SHEIRTPL AIIGFSEV+ +RFG + Sbjct: 618 DITQWKKAEEELTEAKHLAERANLAKSDFLAKISHEIRTPLNAIIGFSEVMMEERFGAIE 677 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N RY +Y I SG ++ ++NDLLD+SKIE+GK++L F V+L+E V + ++++Q A Sbjct: 678 NQRYRDYLRDIHSSGEHLISLINDLLDLSKIEAGKLDLAFTSVALNEIVQQCMAIMQPQA 737 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 N +RI++R+S A ++P ++AD RS++QI LN++SN++ FT GGQ+I+STT T EV+L Sbjct: 738 NRERIVVRSSLATDLPPVVADARSIRQIVLNLVSNSVKFTQPGGQVILSTTLTEQGEVVL 797 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 RVRDTG+GM+ ++ AM+PF QI S + GTGLGLPL KA+ +AN F I S Sbjct: 798 RVRDTGIGMSEADIAIAMEPFRQIATSGRAGSGGTGLGLPLTKALAEANRASFNIRSAVD 857 Query: 800 KGTLIEIIFP 809 GT++EI FP Sbjct: 858 VGTIVEITFP 867 >gi|304393143|ref|ZP_07375071.1| PAS/PAC sensor signal transduction histidine kinase [Ahrensia sp. R2A130] gi|303294150|gb|EFL88522.1| PAS/PAC sensor signal transduction histidine kinase [Ahrensia sp. R2A130] Length = 1323 Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 163/391 (41%), Positives = 244/391 (62%), Gaps = 7/391 (1%) Query: 427 NMPQNGIEPEDVDTRINKRKME-----IEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 N+ +G P DT R+ ++ L +IL+ ++DG+ I++ EG++ NR+ Sbjct: 926 NLRGDGETPSTSDTTSPTREASPHFTGMQADDLRAILDVSTDGVIIVSNEGVVRDINRSA 985 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLL 539 LF E I + T L + YL + + + L + +G T + L+ Sbjct: 986 EALFDVDAEAIAHRSITRLLAPESHRTALDYLANMGATGVASLLNDGREVVGKTSQGGLV 1045 Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 L + + +L S + DI+ WK+ + +L K AE + K+ FLA++SHEIRTP Sbjct: 1046 PLFMTVGQLQHSDDCCAVVRDITHWKKAEEELLTTKAAAEGANELKTQFLAKISHEIRTP 1105 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 L AIIGFSE++ +R G + N RY Y I+RSG VLD+VNDLLDI+KIE+GKM + F Sbjct: 1106 LNAIIGFSEMMIEERLGRIDNDRYRGYLRDINRSGAHVLDLVNDLLDITKIEAGKMEMDF 1165 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 + V L+ VSE ++++Q AN RI+IRTS + +P+++AD RS++QI LN++SN+I FT Sbjct: 1166 DAVDLNRTVSENVAILQAEANADRIIIRTSLSTVVPKVVADQRSMRQIVLNLVSNSIKFT 1225 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 SGGQ+I+ST + + EV+LRVRDTGVGM+ E+E+A++PF Q ++ +GTGLGLP Sbjct: 1226 KSGGQVIVSTVYEDSGEVVLRVRDTGVGMSASEMEQALQPFRQTASAAVSATKGTGLGLP 1285 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 L KA+V+AN F+I STP +GTL+EI FP+ Sbjct: 1286 LTKALVEANRADFHIESTPDEGTLVEIHFPV 1316 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 113/478 (23%), Positives = 181/478 (37%), Gaps = 94/478 (19%) Query: 11 EDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDS 70 ED ++ +L +K D+G ET + E + + S+ +D++QE+ S D Sbjct: 374 EDADETSTDSAKPELDEKPADSG-ETSNTDAEEGDAELVDASSESDEDQENASEEEQPDD 432 Query: 71 E---------------------------------NTFVFDPIPRTVRFTWNIDAHGYLKE 97 E + F F R VRFTW Sbjct: 433 EVSAKQPEAEIEDAEPVAASIATDLEPDTEDKEADGFRFASAARPVRFTWATGPDKAFSA 492 Query: 98 ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNL 157 +S EL T+G A + M VS+ L + + I +LL + +TW +T LWP++GT+L Sbjct: 493 VSAELANTVGPRASAIDDMEWSQVSEKLGFENGDVIDELLDKGDTWSNRTVLWPVDGTDL 552 Query: 158 YVPIDLAALPIYSRNREFSGFRGFGIVHV--------------NRVDNDPRALGKRLDKK 203 VP+DLA LP Y R F GF GFGI+ + DND R LG Sbjct: 553 RVPVDLAGLPSYDTARSFRGFNGFGIIRTADAMVDDTLVEDAEDETDNDLRQLGS----- 607 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPP-PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + + G + ++I S + P L+ + + E + TE +L Sbjct: 608 -----DYEGGENDEANADHEIASNVTAPIGFLKPFSSDTKTDEANEPETSTSDTETTRVL 662 Query: 263 TSEESSLPEQEDFHTIN--LNQYTKKQYFGTLQNNSKESFEYLSHRNHP----------- 309 +S+E+S +F I L K ++ +SF + N Sbjct: 663 SSDETS-----NFRQIGETLTDNAAKATDDEEAESAADSFVPSAFANRAIAEPNVEPETE 717 Query: 310 ---SLSAYFDEGENLTPET---------VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357 S SA D P+T + + PIP VY L + N F T Y + Sbjct: 718 EDNSSSAETDSESKAVPKTDRANVDTSILSRLPIPVLVYRDDELLFGNDEFFSTTGYADL 777 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 ++ GG++ L +D +A + D + L ++ W+ E ++ +T Sbjct: 778 PELAERGGVAAL-----FADADAKGTSPIRHRDGHDLNLHGNLQSVPWDSEKAMLLTL 830 >gi|328545129|ref|YP_004305238.1| PAS domain protein [polymorphum gilvum SL003B-26A1] gi|326414871|gb|ADZ71934.1| PAS domain protein [Polymorphum gilvum SL003B-26A1] Length = 1231 Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 181/495 (36%), Positives = 273/495 (55%), Gaps = 20/495 (4%) Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP------KLSDNN 379 +D+ PI + + YAN + L L Y S++ + AGGL + P D+ Sbjct: 739 LDRLPIGIAIVRDREVLYANETLLALLGYGSIEALSEAGGLEAVFVEPDDHWPDTDGDDT 798 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + + + + AR+H + WN L I + PE P + E + Sbjct: 799 LDETLKVRVAGGGLRRVDARMHAVPWNGGRGL---MISVTERQTPPEARPTS----ELGE 851 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + E + ++ +ILE +DG+ +++R G I+ N + LFG D++ P T Sbjct: 852 REAALKAAEERIAEMDTILETATDGVLVLDRHGTIVKANGSAEALFGASRADMIGAPLTA 911 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSS---CY 554 +L + YL + + L + +G L+ L + I ++ + Sbjct: 912 YLAPESHRSATDYLDGLARNGVASVLNDGREVIGQVASGGLIPLFMTIGRIGNGGEAMKF 971 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 + DI++WK + +L+ AK+ AE SS KSDFLA++SHEIRTPL AIIGFSEV+ +R Sbjct: 972 CAVLRDITQWKAAEEELTEAKRQAETASSQKSDFLAKISHEIRTPLNAIIGFSEVMMEER 1031 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 FG +GN RY EY I SG ++ +VNDLLD+SKIE+GK++L F VS ++ V E ++L Sbjct: 1032 FGAIGNERYKEYLKDIRTSGAHIMSLVNDLLDLSKIEAGKLDLSFSAVSANDVVRECVAL 1091 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 +Q AN +R++IR S +P ++AD RS++QI LN+LSNAI F SGGQ+I+ST N Sbjct: 1092 MQPQANRERVIIRASLPATVPSVVADPRSLRQIVLNLLSNAIKFNRSGGQVIVSTALEPN 1151 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 EV+LRVRDTG GM +L A++PF Q+ ++ +I G L KA+V+AN F+I Sbjct: 1152 GEVVLRVRDTGTGMNAKDLAAALEPFRQV-HTARIGGGTGLGLP-LTKALVEANRAVFHI 1209 Query: 795 FSTPAKGTLIEIIFP 809 STP +GTL+EI FP Sbjct: 1210 DSTPEQGTLVEITFP 1224 Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 45/114 (39%), Positives = 63/114 (55%) Query: 74 FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133 FVF+ R VRF W +D +S E +G ++G +V+D +DP I Sbjct: 262 FVFEARGRPVRFAWKMDIDQRFTFLSPEFADVLGPATADIVGRTWSEVADRFGLDPRGSI 321 Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 L+R++TW GKT WP+ L VP+D+AALP + R R F G+RGFG+V V Sbjct: 322 ARALQRRDTWSGKTVDWPVTDAALRVPVDMAALPAFDRRRVFEGYRGFGVVRVG 375 >gi|115526058|ref|YP_782969.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] gi|115520005|gb|ABJ07989.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] Length = 1184 Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 174/494 (35%), Positives = 289/494 (58%), Gaps = 19/494 (3%) Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI----KPVM 385 P+ +Y L YAN +FL Y S++ +E AGGL L ++ +++ P+ Sbjct: 688 PVGVLIYRLDRLLYANAAFLARMGYDSLNALEQAGGLDVLFVESEVESSSSSSETGAPIT 747 Query: 386 LY----RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + S+ +A+ RLH+I W+ E ++A+ F E +Q EN +G EP+ Sbjct: 748 IAPATTGSEPPHRSAAGRLHSISWDTEPAMALIFSGTEAESQA-ENQ-ADGHEPDRATPS 805 Query: 442 INKRKME----IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 I + + +L +IL+ T+DG+ + + G + + NR+ LFG +++++K Sbjct: 806 IAAGEASPVGHVNAEELAAILDTTTDGVVMFDAGGRLHACNRSAEALFGVNGDELMQKSL 865 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC-Y 554 T + + + YL + + D + L+ + LG +L L +II + Y Sbjct: 866 TELFAPESQATLAAYLETVKNADAQSLLDHGRDLLGLVHNGGMLPLAVIIGRTSADGPNY 925 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 D+S+ ++ + +L+ A+++AE +S K+D LAR+SHEIRTPL AI+GF+EV+ +R Sbjct: 926 FAVFRDLSQARKTETELAQARRLAEHSASAKADVLARLSHEIRTPLNAILGFAEVMIEER 985 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 G LGN RY EY I SG V+ ++NDLLD+S+IE+G+++L F P++L+E V + + + Sbjct: 986 LGALGNERYTEYLKDIRASGERVISVINDLLDLSRIETGQLDLAFAPLNLNEMVEQCVGV 1045 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 +Q +AN +RI+IRTS A+ +P + AD +++QIALN+++ +I +GGQ+I+ST + + Sbjct: 1046 MQPHANRERIIIRTSLAHTLPPVSADAAALRQIALNLIATSIGLANAGGQVIVSTALSDS 1105 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 EV+LRVRDTG + + EL AM+PF P+ E +G+ L L KA+V+AN +F I Sbjct: 1106 GEVMLRVRDTGQRLNDDELAAAMQPFRSAPSDSAT--EASGVSLSLTKALVEANHARFQI 1163 Query: 795 FSTPAKGTLIEIIF 808 + P GTLIE+IF Sbjct: 1164 KTAPHSGTLIEVIF 1177 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 55/103 (53%) Query: 83 VRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142 +RFTW +DA G S+E + IG G +++++ +DP+ + + + T Sbjct: 427 LRFTWQLDAEGRFSIGSDEFSRLIGPRTSAGFGRLWSEIAEVFGLDPDRRFAEAIASRRT 486 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185 W G T LWP++ + + ++++ LP R+ + G+RGFG+ Sbjct: 487 WSGITLLWPVDVPDQRLRVEMSGLPAQDRDGRYIGYRGFGVCR 529 >gi|254474320|ref|ZP_05087709.1| two component sensor kinase [Pseudovibrio sp. JE062] gi|211956595|gb|EEA91806.1| two component sensor kinase [Pseudovibrio sp. JE062] Length = 767 Score = 306 bits (785), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 181/501 (36%), Positives = 293/501 (58%), Gaps = 18/501 (3%) Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL----DAPKLS 376 + P +D+ PI V ++ YAN + L L Y+ + + AGGL + + P S Sbjct: 266 IDPRLLDRLPIGVAVVRDRDVVYANDTLLELLGYERFEALNEAGGLEAIFAEPEECPTPS 325 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK----ANQFPENMPQNG 432 + V + ++ ++ AR+H + WN +L ++ + EK A Q+ Sbjct: 326 PQTVDRIVHVRLAEGGVLSVDARMHAVPWNGAQALMISVV--EKIQNEATADTSAPAQHT 383 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 P +++ IE +L S+L +DG+ ++++ GII S N + LF +D+ Sbjct: 384 SAPVASSSQVEHLHTRIE--ELESVLATATDGVLVMDQRGIIRSANHSAEALFNASEDDL 441 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550 L PFT FL + YL +++ + L + + T + + + + ++ Sbjct: 442 LGAPFTTFLADESHIAALDYLDGLVANGVSSVLNDGREIICQTLDGDIFPTFLSMGRVSS 501 Query: 551 SS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 ++ + + DI+++K+ + +L A+ AE+ ++HKS++L ++SHEIRTPL A+IGFSE Sbjct: 502 ANEQLFCAVLRDITQFKRAEEELVSARYKAEEANTHKSEYLTKISHEIRTPLNAVIGFSE 561 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 V++ +RFG LGN RY EYA I RS + +L ++NDLLD++KIE+GKM+L FE VS + + Sbjct: 562 VMQEERFGELGNVRYKEYARDIHRSCSHMLTLINDLLDLAKIEAGKMDLAFEAVSAADII 621 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 +E ++L+Q ANE+R++IR S ++P+I+AD ++++QI LN+LSNAI F SGGQ+I+S Sbjct: 622 NECVALLQPQANEQRVIIRASTPLSVPKIVADPKTLRQITLNLLSNAIKFNRSGGQVIVS 681 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 N EV LRVRDTG GM+ +LE A++PF ++ S EG+GLGLPL KA+V+AN Sbjct: 682 LVLDPNGEVHLRVRDTGHGMSKADLEAALQPFRRLNASAST--EGSGLGLPLTKALVEAN 739 Query: 789 MGKFYIFSTPAKGTLIEIIFP 809 F I S +GTL E+ FP Sbjct: 740 RASFSINSEEDEGTLAEVTFP 760 >gi|90425417|ref|YP_533787.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] gi|90107431|gb|ABD89468.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] Length = 1188 Score = 300 bits (769), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 181/497 (36%), Positives = 281/497 (56%), Gaps = 26/497 (5%) Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL------DAPKLSDNNAIKP 383 P+ +Y L YAN +FL T + SV ++ AGGL L + SD+ A P Sbjct: 693 PVGVLIYRLDRLLYANRAFLERTGFASVAALDDAGGLDVLYVESGADGSSSNSDDGA--P 750 Query: 384 VMLYRSDRTC-----IAASARLHTIQWNRENSLAMTF----IPFEKANQFPENMPQNGIE 434 + + + R A RL TI W+ E +LA+ F A + I+ Sbjct: 751 ITITAAQRAADQPSSQPAEGRLFTISWDGEPALALIFSETAAETAMAAEAEPFAEAPAID 810 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 P D+ + + E +L +IL+ T++GI + + EG + NR+ LFGYP +++++ Sbjct: 811 P-DLPSAVGAANAE----ELGAILDTTAEGIVMFDAEGQLHVCNRSAEALFGYPGDNLVQ 865 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSS 552 + + V+ Y+ I S L+ + LG +E L+ L II + Sbjct: 866 RNLIELFAPESQRVLLDYIEAIKSDGAASLLDPGREVLGRVREGGLIPLSAIIGRTRHDG 925 Query: 553 C-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 Y D+S+ K+ +++L A++ AE+ ++ K+D LAR+SHEIRTPL AI+GF+EV+ Sbjct: 926 PNYFAVFRDLSQAKKTESELIQARRQAERAANAKADVLARLSHEIRTPLNAILGFTEVMI 985 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 +RFG LGN RY+EY I SG V+ IV+DLLD+S+IE+GK+ L F P L+E V + Sbjct: 986 EERFGALGNERYVEYMKDIRASGERVIAIVSDLLDLSRIETGKLELAFAPQHLNELVEQC 1045 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + ++Q AN +RI+IRTS A+ +P ++AD ++++QI LN++ +IH +GGQ+I+ST Sbjct: 1046 VGVMQPQANRERIIIRTSLAHQLPNVVADAQALRQITLNLIGTSIHLANAGGQVIVSTAL 1105 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + +V+LRVRDTG + +EL AM+PF P S E G+ L L KA+V+AN + Sbjct: 1106 SDFGDVMLRVRDTGSRLNEHELAAAMEPFRTAPPSDH-SSEAPGVSLSLTKALVEANRAQ 1164 Query: 792 FYIFSTPAKGTLIEIIF 808 F+I + P GTLIE+IF Sbjct: 1165 FHIKTAPHSGTLIEVIF 1181 Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 3/112 (2%) Query: 77 DPIP---RTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133 +P+P +RFTW +DA G +S+E + IG G +++ + +DP+ H Sbjct: 398 EPLPPRRHPLRFTWQLDAEGRFSIVSDEFSRLIGPRTAAGFGRLWHEIAALFGLDPDRHF 457 Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185 + +NT+ G WP++G + + ++++ LP+ R+ F G+RGFG+ Sbjct: 458 AAAIATRNTFSGIMLNWPVDGPDQRLAVEMSGLPVQDRDGNFRGYRGFGVCR 509 >gi|86748594|ref|YP_485090.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris HaA2] gi|86571622|gb|ABD06179.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris HaA2] Length = 1149 Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 169/490 (34%), Positives = 278/490 (56%), Gaps = 16/490 (3%) Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 +D P+ +Y L YAN +FL L + S+ +E GGL L + ++ Sbjct: 662 LDLMPVGVLIYRLDRLLYANAAFLQLMGHASLSALEEEGGLDALYVEEGVGGSSGTSEAG 721 Query: 386 LYRSDRTCIAA--SARLHTIQWNRENSLAMTFIPFEKANQFPENM-PQNGIEPE-DVDTR 441 + T +A +ARLHTI+W+ + +LA+ F + + P ++ I PE + + Sbjct: 722 TPITVATPYSAPTAARLHTIEWDGDQALALIF---DGTAERPADVVAAASIAPEPNAPSD 778 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 + E +L +IL+ T++GI + + G I + NR+ LFGY ++++++ Sbjct: 779 VGHANAE----ELGAILDTTAEGILMFDAGGRISACNRSAEALFGYDGDELVQRSIAELF 834 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKI--TLGSTKEEKLLSLRIIIKKL-PFSSCYSLTM 558 + + Y + S L+ LG +E L L + I + P Y Sbjct: 835 APESNDAVRAYFDSVKSGSAESLLDHGLEALGRVREGGLFPLTMTIGRTQPDGPNYFAVF 894 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D+S+ ++ + +L +K+A++ + K+D LAR+SHEIR PL AIIGF+EV+ +RFG L Sbjct: 895 RDLSQARRIEVELDQVRKLADRAAGAKADVLARLSHEIRMPLNAIIGFAEVMIEERFGAL 954 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 GN RY +Y I SG V+ IV DLLD+S+IE+GK++L F +L+E V + ++++Q Sbjct: 955 GNERYADYLKDIRASGERVIGIVGDLLDLSRIETGKLDLAFTSQNLNELVEQCVAVMQPR 1014 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 AN +RI+IR+S A+ +P + AD ++++QI LN++ +IH +GGQ+I+ST + EV+ Sbjct: 1015 ANRERIIIRSSLAHALPSVTADAQALRQIVLNLIGTSIHLANAGGQVIVSTALSDFGEVV 1074 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 LRVRDTG + + E+ A++PF S+ R E +G+ L L KA+V+AN +F+I S P Sbjct: 1075 LRVRDTGHRLNDSEIAAALQPFSTPAPSE--RSEASGVSLSLTKALVEANRAQFHIKSAP 1132 Query: 799 AKGTLIEIIF 808 GTLIE++F Sbjct: 1133 QSGTLIEVVF 1142 Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 53/103 (51%) Query: 83 VRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142 +RF W +D S+EL IG G ++ L +DP++ + ++T Sbjct: 386 LRFVWQLDGDSRFSVKSDELICLIGPRTAAQFGRSWAEIRAALALDPDDRFAQAIATRHT 445 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185 W G T WP +G+ +P++++ LP+ R+ F+G+RGFG+ Sbjct: 446 WSGITLHWPADGSGDRLPLEMSGLPVQDRDGHFTGYRGFGVCR 488 >gi|91975926|ref|YP_568585.1| histidine kinase A-like [Rhodopseudomonas palustris BisB5] gi|91682382|gb|ABE38684.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB5] Length = 1201 Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 177/494 (35%), Positives = 287/494 (58%), Gaps = 24/494 (4%) Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK--- 382 +D P+ +Y L YAN +FL + ++ +E AGGL TL ++ +++ Sbjct: 714 LDLMPVGVLIYRLDRLIYANTAFLQRMGFATLSALEEAGGLDTLYVEEGVTGSSSTSESG 773 Query: 383 -PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE-DVDT 440 P+ + + A RLH I+W+ + +LA+ F A E I PE + + Sbjct: 774 TPITVTTTQSAPTAG--RLHAIEWDGDQALALIF--SATAEPIAEVGAATPIAPEINAPS 829 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT-V 499 + E +L +IL+ T++GI + + +G I + NR+ LFGY +D++++ + Sbjct: 830 DVGHANAE----ELGAILDTTAEGILMFDADGRISACNRSAEALFGYDGDDLVQRNIAEL 885 Query: 500 FLEQNTPSVMNHY----LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL-PFSSCY 554 F ++ +V++++ SL L LE LG +E LL L + I + P + Sbjct: 886 FAPESNGAVLDYFDSVKAGSAESL-LDHGLE--ALGRVREGGLLPLTMTIGRTQPDGPNF 942 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 D+S+ ++ + +L+ +K+AE+ + K+D LAR+SHEIRTPL AIIGF+EV+ +R Sbjct: 943 FAVFRDLSQARKIETELNQVRKLAERAAGAKADVLARLSHEIRTPLNAIIGFAEVMIEER 1002 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 FG LGN RY EY I SG V+ IV+DLLD+S+IE+GK+ L F +L+E V + +++ Sbjct: 1003 FGALGNDRYGEYMKDIRASGERVIGIVSDLLDLSQIETGKLELSFTSQNLNEMVEQCVAV 1062 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 +Q AN +RI+IRTS A+ +P ++AD ++++QI +N++ +IH +GGQ+I+ST + Sbjct: 1063 MQPRANRERIIIRTSLAHLLPTVVADPQALRQIVMNLIGTSIHLANAGGQVIVSTALSDF 1122 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 EV+LRVRDTG + E+ A++PF S R E +G+ L L KA+V+AN KF+I Sbjct: 1123 GEVVLRVRDTGQRLNESEIVAALQPFNTPAPSD--RSETSGVSLSLTKALVEANRAKFHI 1180 Query: 795 FSTPAKGTLIEIIF 808 S P GTLIE++F Sbjct: 1181 KSAPQSGTLIEVVF 1194 Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 70 SENTFVFDPIP---RTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH 126 S ++P+P +RF W +D+ S+E + G G ++ L Sbjct: 427 SSELAAYEPLPPRRHPLRFVWQLDSDSRFTVRSDEFIRLAGPRTIAHFGQPWTEIRAALD 486 Query: 127 IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185 +DP++ + ++TW G T WP +G + +P++++ LP+ R+ F+G+RGFG+ Sbjct: 487 LDPDDSFAQAIATRHTWSGITLQWPADGASRRLPVEMSGLPVQDRDGNFTGYRGFGVCR 545 >gi|182677673|ref|YP_001831819.1| PAS/PAC sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182633556|gb|ACB94330.1| PAS/PAC sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 728 Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 167/410 (40%), Positives = 254/410 (61%), Gaps = 21/410 (5%) Query: 419 EKANQFP--ENMPQNGIEPEDVDTRINKRKM---EIEVMQLCSILEATSDGIAIINREGI 473 E + FP + Q +E E + + +M E EV +L +IL+ +DG+A+++ EG Sbjct: 315 EPVSAFPRTDETAQGPVEGERAARQALEARMHRYESEVRELHAILDTATDGVAVLDAEGR 374 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL-----TEILSL--DLRQTLE 526 IL+ NR+ LFGY ++L +PFT+ + + Y +LSL D R+ Sbjct: 375 ILTLNRSGEALFGYDRGEVLSQPFTMLIAPASRRRAMDYFEGVKTGGVLSLLNDGREIFG 434 Query: 527 KITLGST----KEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAE 579 G T + L + + +P Y + + D+S WK+ + +L A+K AE Sbjct: 435 LARQGGTIPIFMTLGRIGLFVTAETMPEQGVFEKYCVLLRDMSHWKKIERELEAARKEAE 494 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 + S+ KSDFLA+VSHEIRTPL AI+GF+EVI ++RFGP+GN RY +Y I SG LV+ Sbjct: 495 RASTLKSDFLAKVSHEIRTPLNAILGFTEVIMDERFGPIGNERYKDYLKDIHMSGTLVMS 554 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699 +VNDLLD+SKIE+GKM+L F V ++ +++ +SL+Q AN + IL+R + A +P +LA Sbjct: 555 LVNDLLDLSKIEAGKMDLDFVAVDTNQIIADCVSLMQPQANREGILVRLALAPALPPLLA 614 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759 D RS++QI LN+LSNA+ FT GGQ++++T + + ++R+RDTG GM+ E+ A++P Sbjct: 615 DERSLRQIVLNLLSNAVKFTEPGGQVMVATKLMEDGKTLIRIRDTGAGMSEEEIGIALEP 674 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F Q+ S+ +GTGLGLPL KA+V+AN F I S +GT++EI+FP Sbjct: 675 FRQLSTSRS--NQGTGLGLPLTKALVEANRASFSISSKKQEGTVVEILFP 722 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 4/114 (3%) Query: 78 PIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDL 136 P R +RF W D L EI L + G K +G + + DP + D Sbjct: 173 PGERPLRFLWRTDGEHRLVEIGSLLAEVTGLLPEKWVGGPFSSL--LRAFDPTAATMTDW 230 Query: 137 LKRQNTWYGKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189 + L WPIEG + V I L LP F+G++GFG++H +R+ Sbjct: 231 IFAACEGVDDLKLAWPIEGRTVAVDIALGGLPRRDAAGNFAGYQGFGLIHKDRL 284 >gi|27382507|ref|NP_774036.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27355679|dbj|BAC52661.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 1171 Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 171/519 (32%), Positives = 278/519 (53%), Gaps = 47/519 (9%) Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK--- 382 +D P +Y L YANP+FL + SV +E AGGL L P +S ++ Sbjct: 657 LDLLPTGILIYRLDRLLYANPAFLARMGHASVSALENAGGLDALYVEPGVSPASSTSQGG 716 Query: 383 -PVM----LYRSDRTCIAASARLHTIQWNRENS-------------------------LA 412 PV L + A LHTI W+ E++ L+ Sbjct: 717 TPVTISATLPNGEEPLPTTEAHLHTIDWDGESAHALVCALPAAAPVVTAPAVAEPVAALS 776 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472 + P E+ P + + + + + L +IL+ T++GI + + EG Sbjct: 777 VAAEPVVTEPLVAESFPYA--------SELESQAGDADAEDLAAILDTTAEGIVMFDAEG 828 Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITL 530 IL NR+ LFGY E +L + + ++ YL + S D+ L+ + L Sbjct: 829 NILVCNRSAEALFGYDGEALLEQNLVSLFAPESQQIVADYLESLKSQDISSLLDHGREVL 888 Query: 531 GSTKEEKLLSLRIIIKKL-PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 G K+ ++ L +I+ + P + D+S+ K+ +++L+ A+++ + ++ K+D L Sbjct: 889 GREKKGGVIPLAMIMGRTRPDGPNFFAVFRDLSQSKKGESELTQARRLVDGAANAKADML 948 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 AR+SHEIRTPL AIIGF+EV+ ++RFG LGN RY EY I SG V+ I++DLL++S+ Sbjct: 949 ARISHEIRTPLNAIIGFAEVMISERFGTLGNERYGEYMKDIRASGERVIAIIDDLLELSR 1008 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709 IE+GK++L+F ++L++ V + ++Q AN +RI+IRTS + +P++ D R+++QI + Sbjct: 1009 IETGKLDLNFANLNLNDLVEACVVVMQPQANRERIIIRTSLGHALPQVSVDARAMRQITM 1068 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 N++SN+I +GGQ+I+ST EV LR+RDTG G++ E+ AM+PF P Sbjct: 1069 NLISNSIRLASAGGQVIVSTALNDRGEVALRIRDTGHGLSEREVAAAMEPFRTPPPGDA- 1127 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + L L L KA+V+AN +F I S GTLIE++F Sbjct: 1128 -EDNSALSLSLTKALVEANRARFNIKSA-GHGTLIEVVF 1164 Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 5/112 (4%) Query: 83 VRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142 +RF W +D G S E + +G + G +++ +DP + L +T Sbjct: 380 LRFLWQMDTEGRFVLASCEFIRLMGAHTAAGFGRPWREIAAEFSLDPEGRVAQALASHDT 439 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH----VNRVD 190 W G T WP +G ++P++LA LP+Y R F+GF+GFG+ +NR+D Sbjct: 440 WAGITVNWPADGGE-HLPVELAGLPVYDHARNFAGFKGFGVCRDLDGLNRLD 490 >gi|148258028|ref|YP_001242613.1| PAS/PAC sensor signal transduction histidine kinase [Bradyrhizobium sp. BTAi1] gi|146410201|gb|ABQ38707.1| PAS/PAC sensor signal transduction histidine kinase [Bradyrhizobium sp. BTAi1] Length = 981 Score = 277 bits (709), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 162/501 (32%), Positives = 273/501 (54%), Gaps = 19/501 (3%) Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL---DAPKLSDNNAIK 382 +D P +Y L YANP+F Y + +E AGGL L AP S + Sbjct: 471 LDLLPTGMLIYRLDRLLYANPAFFKQMGYTDLATLEQAGGLDALYVEPGAPAGSGKPEVG 530 Query: 383 -PVMLYRSDRTC---IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN------- 431 PV + +D + I A ARL TI W+ +++ A+ F P + P Sbjct: 531 TPVTISAADGSSSEEIKAEARLFTITWDGDSAHALIFAPAPGPAATAVSAPAETGSAPAP 590 Query: 432 -GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 P + + L +IL+ T++GI + + G I + NR+ +FGY Sbjct: 591 APAAPAPLVLAPPPVAGHADAEDLAAILDVTAEGILMFDAGGNIHACNRSAEAMFGYDGT 650 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKL 548 +++R+ + ++ +L + E + LG + + L + I + Sbjct: 651 ELVRRNIIELFAPESARLVLDHLDRVQQAGTANVPEPSREVLGKVAQGGAIPLSMTIGRT 710 Query: 549 PFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + D+S+ ++ +++L A+++A++ +S K+D LAR+SHE+R PL AIIGF+ Sbjct: 711 RQDGPNFFAVFRDLSQLRRGESELLQARRVADRAASAKADMLARISHEVRAPLNAIIGFA 770 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 EV+ +RFG LGN RY EY I SG V+ +++DLL++S+IE+G++ L F +L+E Sbjct: 771 EVMIGERFGTLGNTRYAEYMKDIRASGERVVSLIDDLLELSRIETGRLELAFTSQNLNEL 830 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 V ++++Q +AN RI+IRTS + ++P ++AD R+++QIA+N++S +I +GGQ+I+ Sbjct: 831 VEGCVAVMQPHANRARIIIRTSLSQSLPPVIADARALRQIAMNLISTSISLANAGGQVIV 890 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 ST + EV+LRVRDTG G+ + + A++PF +Q +G+GL L L KA+V+A Sbjct: 891 STATSDFGEVVLRVRDTGHGLNDQAVAAALEPFRATAGPEQGH-DGSGLSLSLTKALVEA 949 Query: 788 NMGKFYIFSTPAKGTLIEIIF 808 N +F+I + P GTL+E++F Sbjct: 950 NRAQFHIKAAPKSGTLLEVVF 970 >gi|92116807|ref|YP_576536.1| PAS/PAC sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] gi|91799701|gb|ABE62076.1| PAS/PAC sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] Length = 1031 Score = 268 bits (684), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 164/494 (33%), Positives = 263/494 (53%), Gaps = 33/494 (6%) Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL---DAPKLSDNNAI 381 +D P +Y + Y NP+FL Y + +E AGGL LL P A Sbjct: 552 VLDLLPTGVMIYRLDRVLYVNPAFLAQVGYDGLLALEQAGGLDALLVESGMPAADSTPAT 611 Query: 382 -KPVMLYRSDRTCIAA---SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 PV + + + +A L I W+ E + A+ P + E Sbjct: 612 GSPVTISATPPSGPPQQPIAAHLFVIAWDGEPAHALIC----AGASAPSPVGHATAE--- 664 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 +L +IL+ T++GI + + G I + NR+ LFG+ + + + Sbjct: 665 ---------------ELGAILDTTAEGILMFDDGGRITACNRSAEALFGHSGDSLTQFNL 709 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC-Y 554 + + YL I+ + L+ + LG +E L+ L + + + + Sbjct: 710 ADLFAPESEGAVRDYLNGIVGNGVASLLDHGREVLGRVREGGLIPLSMTMGRTQADGPNF 769 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 D+S+ K+ + +LS A++ A++ ++ K+D LAR+SHEIRTPL AIIGF+EV+ +++ Sbjct: 770 FAVFRDLSQAKKIETELSQARRQADRAANAKADVLARISHEIRTPLNAIIGFAEVMTDEK 829 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 FG LGN RY+EY I SG ++ ++DLLD+S+IE+GK++L F +L+E V + +++ Sbjct: 830 FGALGNERYVEYMKDIRASGERIIAFIDDLLDLSRIETGKLDLAFVNQNLNELVEQCVAV 889 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 +Q AN +RI+IRTS A+ +P I+AD +++QIALN++ N+IH +GGQ+I+ST Sbjct: 890 MQPQANRERIIIRTSLAHTLPPIVADAHALRQIALNLIGNSIHLANAGGQVIVSTALNDF 949 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +V LRVRDTG G+ EL A +PF + P E G+ L L KA+V+AN +F I Sbjct: 950 GDVALRVRDTGHGLNENELAAATEPF-RTPAPSDQASESAGVSLSLTKALVEANRAQFNI 1008 Query: 795 FSTPAKGTLIEIIF 808 + P GTLIE++F Sbjct: 1009 RTGPHSGTLIEVVF 1022 Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 59/101 (58%) Query: 83 VRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142 +RF W +DA G S+E + IG G +++++ +DP+ + + ++T Sbjct: 261 LRFMWRMDAEGRFSLGSDEFTRVIGTRTAAGFGRLWSEITEVFGLDPDGRVAKAVATRDT 320 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183 W G T LWP++G+ +P++L+ LPI+ R F+G+RGFG+ Sbjct: 321 WSGITLLWPVDGSGARLPVELSGLPIFDLARNFAGYRGFGV 361 >gi|39937200|ref|NP_949476.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] gi|39651058|emb|CAE29581.1| sensor histidine kinase with a PAS domain [Rhodopseudomonas palustris CGA009] Length = 348 Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 135/345 (39%), Positives = 217/345 (62%), Gaps = 7/345 (2%) Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 + + G I + NR+ LFGY + +++ + + + YL I S + L+ Sbjct: 1 MFDEAGEISAANRSAEALFGYDGDVLVQHNLIELFAPESRAAVLDYLDSIKSGRAQSVLD 60 Query: 527 KI--TLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 LG +E L L + I + + D+S+ ++ + +LS AK++AE+ + Sbjct: 61 HGLEALGQVREGGLFPLSMTIGRTRTDGPNFFAVFRDLSQLQRTETELSQAKRLAERATG 120 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 K+D LAR+SHEIR PL AIIGF+EV+ +RFGPLGN RY++Y I SG V+ IV+D Sbjct: 121 AKADVLARLSHEIRAPLNAIIGFAEVMIEERFGPLGNERYVDYMKDIRASGERVIGIVDD 180 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 LLD+S+IE+GK++L F ++L+E V ++++++Q AN +RI+IRTS A+++P ++AD ++ Sbjct: 181 LLDLSRIETGKLDLAFASINLNELVEQSVAVMQPRANRERIIIRTSLAHSLPTVVADAQA 240 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 ++QI +N++S +IH + GQ+I+ST + EV+LRVRDTG + + EL A++PF + Sbjct: 241 LRQIIMNLISTSIHLANAAGQVIVSTALSDAGEVVLRVRDTGSRLNDDELAAALQPF-RT 299 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 P+ R E G+ L L KA+V+AN F+I S P GTLIE++F Sbjct: 300 PSD---RTEAAGVSLSLTKALVEANRATFHIKSAPQSGTLIEVVF 341 >gi|218507377|ref|ZP_03505255.1| probable two-component sensor histidine kinase protein [Rhizobium etli Brasil 5] Length = 191 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 109/169 (64%), Positives = 140/169 (82%), Gaps = 1/169 (0%) Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 NDLLDISKIE+G+M+L F V L+EAVSEA++LVQ AN +R++IRT+ ++ +P ++ADL Sbjct: 16 NDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQPQANGQRVIIRTALSHAVPDVVADL 75 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 RS+KQIALNILSNAI FTPSGGQI++ST++ +N V+LRVRDTGVGMT EL++AMKPF Sbjct: 76 RSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSVVLRVRDTGVGMTRSELDQAMKPFR 135 Query: 762 QIPNSQ-QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q+ ++Q + RG+GTGLGLPL KAMVDAN F I S P +GTL+EI FP Sbjct: 136 QVSSTQSRHRGDGTGLGLPLTKAMVDANRATFSINSAPNEGTLVEITFP 184 >gi|144899922|emb|CAM76786.1| Signal transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 830 Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 202/363 (55%), Gaps = 31/363 (8%) Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 I +G IL N P + L + + + P + +TE+L+ + E Sbjct: 473 IGIDGAILHAN---------PASEPLLSEWATGMGRKVPDEWHGIITEVLATGRQLQAEL 523 Query: 528 ITLGSTKEEKLLSLRII-IKKLPFSSCYSLTM--------------HDISEWKQEKNK-L 571 +G ++LSL ++ +K + + Y+ + D+ +E+ + L Sbjct: 524 PVIG-----RVLSLTLVPVKGAGYVNIYATDVSDRVAAERQLADANEDLERRVEERTRDL 578 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 AK+ AE S KS+FLA +SHE+RTPL AIIGFSEV+ FGPLGN RY EYA I Sbjct: 579 VRAKEQAELASRSKSEFLATISHELRTPLNAIIGFSEVMAGSMFGPLGNSRYQEYAGDIV 638 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 +SG +L ++ND+LD+SKIE+G+M+L F PV + + A+ LV+ A + +R+ Sbjct: 639 QSGRHLLAVINDILDVSKIEAGQMSLDFGPVDIPPVIDSAVRLVETRARANSLRLRSEVD 698 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 ++P I D R QI +N+LSNAI FTP GGQ+ I + N+ + L+V+DTG+GM+ Sbjct: 699 KDLPIIDGDRRRCLQILVNLLSNAIKFTPEGGQVTIGASR-ENDGIRLKVQDTGIGMSES 757 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 E++ A++PF Q+ S + EGTGLGLPLAK+MV+ + G + S +GT + PL Sbjct: 758 EIQVALEPFRQVDGSLSRQYEGTGLGLPLAKSMVELHGGSLVVNSRKGEGTEVAFWLPLN 817 Query: 812 DTS 814 S Sbjct: 818 QNS 820 >gi|315498970|ref|YP_004087774.1| multi-sensor signal transduction histidine kinase [Asticcacaulis excentricus CB 48] gi|315416982|gb|ADU13623.1| multi-sensor signal transduction histidine kinase [Asticcacaulis excentricus CB 48] Length = 864 Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 115/245 (46%), Positives = 161/245 (65%), Gaps = 2/245 (0%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 K AK AE+ + KS+FLA +SHE+RTPL AI GFSE++ + FGPLG+ RY EYA Sbjct: 601 KYEMAKIRAEQANHAKSEFLANMSHELRTPLNAINGFSEIMAGEMFGPLGHARYKEYAGD 660 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG +L ++ND+LD+SKIE+GKM L FEPVS++E V + + LV+ A + + +R Sbjct: 661 ILSSGQHLLALINDILDMSKIEAGKMTLRFEPVSVEEVVDDTLRLVRQRAEKAGLKMRVH 720 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 +P I AD R++KQI LNIL+NAI FTPSGG I +S T + + L V DTG+G+ Sbjct: 721 LP-QLPDIQADYRALKQILLNILTNAIKFTPSGGTITVSAVPT-DSFMHLYVADTGIGIA 778 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++E+ +PF QI N EGTGLGL L K++++ + G+ + ST +GT + +I P Sbjct: 779 PKDMERLARPFEQIENQFSRTKEGTGLGLALTKSLIEMHSGRLEVDSTVGQGTTVSVILP 838 Query: 810 LYDTS 814 L TS Sbjct: 839 LTQTS 843 >gi|240139110|ref|YP_002963585.1| putative histidine kinase with HK Homodimeric domain, ATPase domain and a sensory PAS domain [Methylobacterium extorquens AM1] gi|240009082|gb|ACS40308.1| putative histidine kinase with HK Homodimeric domain, ATPase domain and a sensory PAS domain [Methylobacterium extorquens AM1] Length = 843 Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 153/497 (30%), Positives = 243/497 (48%), Gaps = 43/497 (8%) Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 E ++ P+ VY + +A+ +FL LT Y + + AG L+ L D I P Sbjct: 377 ELLESLPLGVLVYRGSEMLFASRTFLDLTGYADLPALRQAG-LAHLFRGLPPRDREIIGP 435 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 V R + +A + W A I +A MP G D+ N Sbjct: 436 VPFARPEGGTVALLVDRAGLVWEG----AQAEICLARA------MPAAG----DIQLPAN 481 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 ++ E +L++ DG+ ++ EG ++ N + ++L ++++ F Sbjct: 482 AARLRAE-----KVLDSLEDGVVTLDAEGRVVGLNPSAAELVHAHPKEVVGGRFADLFAS 536 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL----PFSSCYSLTM- 558 + S + +T D R++ G T +LR+ I +L C SL Sbjct: 537 ESLSALETAVT-----DSRRSGTSKVHGVTVRTGAAALRLRIARLLGEDAPGYCASLREI 591 Query: 559 --HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 D++ + ++ E E K++ LARVS EIR L AI+G ++++ + RF Sbjct: 592 RDEDVAPPAPVAEPVRRSEP--EAEGVWKANALARVSREIRPSLNAILGLTDMMLSDRFD 649 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 R Y + SG + +++DLLD+++I++G+ L F ++L+E V+ I+ Q Sbjct: 650 RADAERLEAYLREVRLSGGRIAALIDDLLDLAEIQAGRGKLTFADLALNELVASCIAAQQ 709 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A RI++RTS A N+P + AD RS++Q AL +L NAI T +GGQ+I+STT E Sbjct: 710 PQAARDRIVLRTSLAPNLPAMKADERSIRQAALTVLGNAIRVTEAGGQVIVSTTLAEQGE 769 Query: 737 VILRVRDTGVGMTNYELEKAMKPF----GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 V LRVRDTG GMT EL A++PF G +P G+ G GL L KA+V+AN G+F Sbjct: 770 VALRVRDTGTGMTEDELMSALEPFGADLGAVPE-----GDEKGFGLTLTKALVEANRGRF 824 Query: 793 YIFSTPAKGTLIEIIFP 809 I S +GTL+E++FP Sbjct: 825 RISSRKDEGTLVEMLFP 841 >gi|329849802|ref|ZP_08264648.1| non-motile and phage-resistance protein [Asticcacaulis biprosthecum C19] gi|328841713|gb|EGF91283.1| non-motile and phage-resistance protein [Asticcacaulis biprosthecum C19] Length = 836 Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 113/246 (45%), Positives = 156/246 (63%), Gaps = 2/246 (0%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 K AK AE + KS+FLA +SHE+RTPL AI GFSE++ + FGPLG+ RY EYA Sbjct: 582 KYEMAKIRAEAANHAKSEFLANMSHELRTPLNAINGFSEIMATEMFGPLGHARYKEYAGD 641 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG +L ++ND+LD+SKIE+GKM L EPVSLDE + + + LV+ A + + IR Sbjct: 642 ILGSGQHLLSLINDILDMSKIEAGKMTLRIEPVSLDEVIEDTLRLVRQRAEKAGLKIRVH 701 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 +P I AD R++KQI LN+L+NAI FTP G + IS T N V + V DTG+G+ Sbjct: 702 MP-QLPEIEADFRALKQILLNLLTNAIKFTPQHGTVTISAAMTDN-NVHIAVADTGIGIA 759 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++E+ +PF QI N EGTGLGL L K++++ + G+ I ST +GT + +I P Sbjct: 760 AKDMERLARPFEQIENQFSKTKEGTGLGLALTKSLIEMHSGRLEIDSTEGQGTTVNVILP 819 Query: 810 LYDTSH 815 + T Sbjct: 820 IRQTGQ 825 >gi|83594543|ref|YP_428295.1| PAS/PAC sensor Signal transduction histidine kinase [Rhodospirillum rubrum ATCC 11170] gi|83577457|gb|ABC24008.1| PAS/PAC sensor signal transduction histidine kinase [Rhodospirillum rubrum ATCC 11170] Length = 778 Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 110/281 (39%), Positives = 174/281 (61%), Gaps = 3/281 (1%) Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + EE+ L R + P Y L+ + DI++ ++ +++L AK+ AE + KS+FL Sbjct: 492 AGAEERWLRHRATALRRPDGQIYRLSGAVGDITDSRRGEDRLREAKEAAEFANRAKSEFL 551 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 +SHE+RTPL AIIGFSEV+ ++ FGPLG +Y++YA I SG +LD++ND+LD+S+ Sbjct: 552 TNMSHELRTPLNAIIGFSEVLHSEMFGPLGATQYLDYAASIRDSGRHLLDVINDILDVSR 611 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709 IE+G+ L EP+ E V+ LV A + ++ + +P +L + R +KQ+ + Sbjct: 612 IEAGRATLFPEPLDFAEIVASVHRLVNQRAEAAGVRLKITLDPALPPLLGEARRLKQVLI 671 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 N+L NAI FTP+GG+I +S ++ ++++ V D+G+GM ++ A++PF QI Sbjct: 672 NLLGNAIKFTPAGGEIALSARGDEDKGQMVIEVSDSGIGMAPEDIPLALEPFRQIDGQLA 731 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 R EGTGLGLPL+KA V+ + G + STP GT I + P Sbjct: 732 RRYEGTGLGLPLSKAFVELHGGTLRVDSTPGAGTRITVRLP 772 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 51/206 (24%), Positives = 83/206 (40%), Gaps = 20/206 (9%) Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQ--WNRENSLAMTFIPFEKANQFPENMPQNGIE 434 DN AI +R+ R AR H + W+ EN E PE + G+ Sbjct: 208 DNGAIPAATRHRT-RWLSLCMARHHLPRGAWDFENGRGRWVRVSESLT--PEG-GRVGLL 263 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + +TR ++ +L I++ DGI +I+ GII S N A +LFGY E+++ Sbjct: 264 TDITETRKASEQVRQREQRLDGIMKTVVDGIVVIDENGIIESFNPAAERLFGYRAEEVVG 323 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-------KLLSLRIIIKK 547 + + L L QT + +G +EE LL + + I + Sbjct: 324 ASINRLIPGGESGRHDRSLRRYL-----QTGQAGIIGRGREELALRRDGSLLPVELAISE 378 Query: 548 LPFSS--CYSLTMHDISEWKQEKNKL 571 L ++ + DIS K+ +L Sbjct: 379 LRLDDRRIFTGLVRDISARKEADRQL 404 >gi|23016597|ref|ZP_00056351.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 734 Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 108/250 (43%), Positives = 159/250 (63%), Gaps = 1/250 (0%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI KQ + +L AK+ AE S KSDFLA +SHE+RTPL AIIGF+E + +Q GP+ Sbjct: 475 DIERRKQAEVQLLAAKEQAESASRAKSDFLAGMSHELRTPLNAIIGFAETMYSQVLGPIP 534 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 RY EYA I SG +L I+ D+LD++KIE+G+M L PV + V AI L++ Sbjct: 535 E-RYREYAGDIAASGRHLLGIITDILDLAKIEAGRMELDENPVEIAPVVEAAIRLLRDRG 593 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 R+ + + ++PRILAD R ++Q+ +N+L+NA+ FTP GG + +S T++ + L Sbjct: 594 TAARLDLHSDIPASLPRILADERRIRQVVINLLANAVKFTPHGGSVSVSANLTTDGGLAL 653 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+GMT+ E+ +A++PF Q+ R EGTGLGLP+ A+++ + G I S P Sbjct: 654 HVSDTGIGMTDEEMSQAVEPFVQVDARIARRHEGTGLGLPMVAAIMEMHRGTIAIASRPN 713 Query: 800 KGTLIEIIFP 809 +GT + + FP Sbjct: 714 QGTTVTVTFP 723 >gi|209965994|ref|YP_002298909.1| non-motile and phage-resistance protein [Rhodospirillum centenum SW] gi|209959460|gb|ACJ00097.1| non-motile and phage-resistance protein [Rhodospirillum centenum SW] Length = 693 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 126/357 (35%), Positives = 193/357 (54%), Gaps = 16/357 (4%) Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522 +GI I + EG LS N A+ ++ GY E L L+ + ++ + LR Sbjct: 311 EGIFITSLEGRFLSVNPAMVRMLGYGSETEL---LVGLLDIGSQLYVDPARRGEM---LR 364 Query: 523 QTLEKITLGSTKEEKL----------LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 Q EK T+ + E L+ R + + + + D++E ++ + Sbjct: 365 QMREKGTVQDFEAEMRRRDGSTVWLSLTARALRNSAGQITSFQGSCEDVTERRRAVEIMR 424 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A + +E + K +FLA +SHE+RTPL AIIGFSE+I Q GP+GNP Y EYA+ I Sbjct: 425 VAMQQSEMANRAKGEFLANMSHELRTPLNAIIGFSEIIAAQSLGPIGNPAYAEYASDIHD 484 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG ++LD++N++LD+S IE+G+ L V + V ++ L++ A + + + T+ Sbjct: 485 SGRVLLDVINEILDLSAIETGRRELKERTVDIGRVVRGSLRLIRERALQGGVTLETALDE 544 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 +P + AD ++KQI N+LSNA+ FTP GG+I T + ++L VRDTG+GM + Sbjct: 545 TLPLVRADETALKQILSNLLSNAVKFTPPGGRITAGARETEDGRMLLTVRDTGIGMRPED 604 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L AM+PF Q+ G GLGLPL KA+VD + G F + STP GTL + P Sbjct: 605 LAHAMEPFRQVEKPLTRHAGGAGLGLPLVKALVDLHGGSFELESTPDAGTLASVWLP 661 >gi|163851983|ref|YP_001640026.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163663588|gb|ABY30955.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 846 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 153/498 (30%), Positives = 239/498 (47%), Gaps = 42/498 (8%) Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 E ++ P+ VY + +A+ +FL LT Y + + AG L+ L D I P Sbjct: 377 ELLESLPLGVLVYRGSEMLFASRTFLDLTGYADLPALRQAG-LAHLFRGLPPRDREIIGP 435 Query: 384 VMLYRSDRTCIAASARLHTIQW---NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 V R + +A + W E LA +P Q P +P N Sbjct: 436 VPFARPEGGTVALLVDRAGLVWEGAQAEICLARA-MPAAGDIQLP-AIPANA-------A 486 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R+ K +L++ DG+ ++ EG ++ N + ++L ++++ F Sbjct: 487 RLRAEK----------VLDSLEDGVVTLDAEGRVVGLNPSAAELVHAHPKEVVGGRFADL 536 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL----PFSSCYSL 556 + S + +T D R++ G T +LR+ I +L C SL Sbjct: 537 FAPESLSALETAVT-----DSRRSGTSEVHGVTVRTGAAALRLRIARLLGEDAPGYCASL 591 Query: 557 T-MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + D + E E K++ LARVS EIR L AI+G ++++ + RF Sbjct: 592 REIRDEDVAPPAPVAEPARRSEPEAEGVWKANALARVSREIRPSLNAILGLTDMMLSDRF 651 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 R Y + SG + +++DL D+++I++G+ L F ++L+E V+ I+ Sbjct: 652 DRADAERLEAYLREVRLSGGRIAGLIDDLRDLAEIQAGRGKLTFADLALNELVASCIAAQ 711 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 Q A RI++RTS A N+P + AD RS++Q AL +L NAI T +GGQ+I+STT Sbjct: 712 QPQAARDRIVLRTSLAPNLPAMKADERSIRQAALTVLGNAIRVTEAGGQVIVSTTLAEQG 771 Query: 736 EVILRVRDTGVGMTNYELEKAMKPF----GQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 EV LRVRDTG GMT EL A++PF G +P G+ G GL L KA+V+AN G+ Sbjct: 772 EVALRVRDTGTGMTEDELMSALEPFGADLGAVPE-----GDEKGFGLTLTKALVEANRGR 826 Query: 792 FYIFSTPAKGTLIEIIFP 809 F I S +GTL+E++FP Sbjct: 827 FRISSRKDEGTLVEMLFP 844 >gi|288962795|ref|YP_003453089.1| two-component sensor histidine kinase [Azospirillum sp. B510] gi|288915061|dbj|BAI76545.1| two-component sensor histidine kinase [Azospirillum sp. B510] Length = 448 Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 130/437 (29%), Positives = 225/437 (51%), Gaps = 50/437 (11%) Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEV-----------MQLCSILEATSDGIAIINREGI 473 P +P + +P + R+ R E+E ++ S+++ + I ++ +G Sbjct: 12 PRRLPPSVSDPAETIRRLEARIAELEANLRRSETRVGELRFRSLVQTAASIILVLGADGR 71 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQN------TPSVMNHYLTEILSL-----DLR 522 +L N + FG V + +P+T +E+ T M TEI + D + Sbjct: 72 VLEANHEAERAFGLEVGQAVGRPWTEVMEERPNGAFATQLAMAAEGTEIRNFEQAVRDQQ 131 Query: 523 QTLEKITLG----------------------STKEEKLLSLRIIIKKLPFSSC--YSLTM 558 E++ L + ++ ++LR +L M Sbjct: 132 YRSERVLLWNLNRLPESDGAPAGILCVGQDITRRKRAEMALRQARDELEMRVADRTRALM 191 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +I E ++ + L AK+ AE + KS+FLA +SHE+RTPL AIIGFS +++++ GPL Sbjct: 192 QEIQERRRAEQALIQAKEQAELANRAKSEFLANMSHELRTPLNAIIGFSSMMESEIVGPL 251 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 G+P+Y++YA I +SG +L +++D+LD++KIE+GK+ +H +P+ + +AV ++ L+ Sbjct: 252 GHPKYLDYAKVIGKSGQHLLAVISDILDVAKIEAGKLEMHPQPMDVRDAVESSLLLIAER 311 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A E + + A + PR+L D VKQI LN+L+NA+ FTP+GG + + ++ Sbjct: 312 AKEGGLTLVQDIAPDTPRLLGDPVRVKQILLNLLANAVKFTPAGGSVTLR-VRPEGGRIL 370 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V D+G+GM+ + A++PFGQ+ + R GTGLGLPL ++ V+ G I S Sbjct: 371 IEVADSGIGMSAEGIAIALQPFGQVDSQLSRRSGGTGLGLPLVRSFVELLNGTLDIRSRE 430 Query: 799 AKGTLIEIIFPL---YD 812 +GT I + P+ YD Sbjct: 431 GEGTTISVRLPVAMSYD 447 >gi|83591406|ref|YP_425158.1| PAS/PAC sensor Signal transduction histidine kinase [Rhodospirillum rubrum ATCC 11170] gi|83574320|gb|ABC20871.1| PAS/PAC sensor signal transduction histidine kinase [Rhodospirillum rubrum ATCC 11170] Length = 773 Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 126/365 (34%), Positives = 204/365 (55%), Gaps = 17/365 (4%) Query: 457 ILEAT---SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 +LEAT S + + + +GI++ N A +EDIL P F+E V Sbjct: 410 LLEATELMSAAMLLFDPQGILVLINSACRAAL-PDLEDIL-HPGLSFIELRAAIVARRLF 467 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLR------IIIKKLPFSSCYSLTMH-DISEWKQ 566 + ++ ++ I G T + +R ++I++ SS Y+L + DI+E K+ Sbjct: 468 VQAIT----ESQGGIK-GGTPGPAPIEVRGKDGRWLLIRQSATSSGYTLILGTDITELKR 522 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + L+ AK++AE + KS+FLA +SHE+RTPL AIIGFS++ ++Q FG L NP Y++Y Sbjct: 523 RERALADAKEVAEYANRAKSEFLANMSHELRTPLNAIIGFSDITRHQMFGRLDNPVYVDY 582 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 A I SG +L+I++D+LD++KIE+G++ L E V V AI +V A KRI + Sbjct: 583 ARNIYDSGTHLLEIISDILDLAKIEAGELGLDEEEVDAARLVDSAIQMVTPRATSKRIAL 642 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 ++PR+ D +KQ+ +N+LSNA+ +T G + ++ + + + V DTG+ Sbjct: 643 TNLLTGDLPRLWCDPLRLKQVLINLLSNAVKYTQEDGAVAVTARLAGGDGLAISVIDTGI 702 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 GM ++ AM FGQ+ + R GTGLGLPL + + +A+ G I S P +GT + I Sbjct: 703 GMDEAGIQVAMTAFGQVESPYSRRQGGTGLGLPLTRKLTEAHQGCLTIASRPGEGTTVTI 762 Query: 807 IFPLY 811 + P + Sbjct: 763 LLPAH 767 >gi|218530735|ref|YP_002421551.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium chloromethanicum CM4] gi|218523038|gb|ACK83623.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium chloromethanicum CM4] Length = 841 Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 151/500 (30%), Positives = 245/500 (49%), Gaps = 46/500 (9%) Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 E ++ P+ VY + +A+ +FL LT Y + + AG L+ L D I P Sbjct: 372 ELLESLPLGVLVYRGSEMLFASRTFLDLTGYADLPALRQAG-LAHLFRGLPPRDREIIGP 430 Query: 384 VMLYRSDRTCIAASARLHTIQW---NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 V R + +A + W E LA +P Q P +P N Sbjct: 431 VPFARPEGGTVALLVDRAGLVWEGAQAEICLARA-MPAAGDIQLP-AVPANA-------A 481 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R+ K +L++ DG+ ++ EG ++ N + ++L ++++ F Sbjct: 482 RLRAEK----------VLDSLEDGVVTLDAEGRVVGLNPSAAELVHAHPKEVVGGRFADL 531 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTM 558 + S + +T D R++ G T +LR+ I +L Y ++ Sbjct: 532 FAPESLSALETAVT-----DSRRSGTSEVHGVTVRTGAAALRLRIARLLGEDAPGYCASL 586 Query: 559 HDISEWKQEKNKLSHAKKIA-----EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 +I + ++ + ++A E E K++ LARVS EIR L AI+G ++++ + Sbjct: 587 REIRD--EDVAPPAPVAEVARRSEPEAEGVWKANALARVSREIRPSLNAILGLTDMMLSD 644 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 RF R Y + SG + +++DL D+++I++G+ L F ++L+E V+ I+ Sbjct: 645 RFDRADAERLEAYLREVRLSGGRIAALIDDLRDLAEIQAGRGKLTFADLALNELVASCIA 704 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 Q A RI++RTS A ++P + AD RS++Q AL +L NAI T +GGQ+I+STT Sbjct: 705 AQQPQAARDRIVLRTSLAPSLPAMKADERSIRQAALTVLGNAIRVTEAGGQVIVSTTLAE 764 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPF----GQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 EV LRVRDTG GMT EL A++PF G +P G+ G GL L KA+V+AN Sbjct: 765 QGEVALRVRDTGTGMTEDELMSALEPFGADLGAVPE-----GDEKGFGLTLTKALVEANR 819 Query: 790 GKFYIFSTPAKGTLIEIIFP 809 G+F I S +GTL+E++FP Sbjct: 820 GRFRISSRKDEGTLVEMLFP 839 >gi|49473936|ref|YP_031978.1| hypothetical protein BQ02870 [Bartonella quintana str. Toulouse] gi|49239439|emb|CAF25788.1| hypothetical protein BQ02870 [Bartonella quintana str. Toulouse] Length = 435 Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 203/370 (54%), Gaps = 24/370 (6%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 + S+L+ +DGI +N +G I S +RAV L GY + ++ R+P + + S++ Y Sbjct: 76 VLSLLDTATDGILWLNEQGFIQSVSRAVLALTGYEINELRRQPLSSLFTLQSRSLIEKYF 135 Query: 514 TEILSLDLRQTLEKITLGS--TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 I Q + + TK K +++ + I L + Y++ + D+++ L Sbjct: 136 KLITMKGKNQVFTRGEIADLVTKSSKNITVSMTIVSLAQQNSYAVMLSDMTDVM-----L 190 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 S KK+ E + + V HE+RTPL A+IGF+E++++ RFG + N RY Y I Sbjct: 191 SLEKKVEENK-------MVGVVHEMRTPLNALIGFAEIMRDGRFGSIENERYRGYLRDII 243 Query: 632 RSGNLVLDIVNDLLDISKI-ESGKMNLHFEPVSLD-----EAVSEAISLVQLYANEKRIL 685 SG +L +VN LL+ SK SG N P+ + + +++ ++ AN I+ Sbjct: 244 SSGKHILSLVNQLLECSKANHSGSKNQINTPIIAETFDVISCLRASMAFLETQANHNGII 303 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 +R ++P I + +QI N+LSNAI FTPSGGQII+ ++ E V + V D G Sbjct: 304 MRIIAPVHVPFICVSQQIFRQIIWNLLSNAIRFTPSGGQIIVHVSYGKKECVKISVSDNG 363 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGE----GTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 VGM++ E+ A++P+GQ+ + G+ GTGLGLP+ KAMV+ + G+F +FS P G Sbjct: 364 VGMSDEEIVHALQPYGQVERKDRHSGDSVFVGTGLGLPICKAMVEESGGQFLLFSKPNHG 423 Query: 802 TLIEIIFPLY 811 T +E+ FP++ Sbjct: 424 TTVEMFFPVF 433 >gi|254561704|ref|YP_003068799.1| histidine kinase [Methylobacterium extorquens DM4] gi|254268982|emb|CAX24943.1| putative histidine kinase with HK Homodimeric domain, ATPase domain and a sensory PAS domain [Methylobacterium extorquens DM4] Length = 842 Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 152/498 (30%), Positives = 239/498 (47%), Gaps = 42/498 (8%) Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 E ++ P+ VY + +A+ +FL LT Y + + AG L+ L D P Sbjct: 373 ELLESLPLGVLVYRGSEMLFASRTFLDLTGYADLPALRQAG-LAHLFRGLPPRDREITGP 431 Query: 384 VMLYRSDRTCIAASARLHTIQW---NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 V R + +A + W E LA +P Q P +P N Sbjct: 432 VPFARPEGGTVALLVDRAGLVWEGAQAEICLARA-MPAAGDIQLP-AIPANA-------A 482 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R+ K +L++ DG+ ++ EG ++ N + ++L ++++ F Sbjct: 483 RLRAEK----------VLDSLEDGVVTLDAEGRVVGLNPSAAELVHAHPKEVVGGRFADL 532 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL----PFSSCYSL 556 + S + +T D R++ G T +LR+ I +L C SL Sbjct: 533 FAPESLSALETAVT-----DSRRSGTSEVHGVTVRTGAAALRLRIARLLGEDAPGYCASL 587 Query: 557 T-MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + D ++ E E K++ LARVS EIR L AI+G ++++ + RF Sbjct: 588 REIRDEDAAPPVPVAEPARRREPEAEGVWKANALARVSREIRPSLNAILGLTDMMLSDRF 647 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 R Y + SG + +++DL D+++I++G+ L F ++L+E V+ I+ Sbjct: 648 DRADAERLEAYLREVRLSGGRIAALIDDLRDLAEIQAGRGKLTFADLALNELVASCIAAQ 707 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 Q A RI++RTS A N+P + AD RS++Q AL +L NAI T +GGQ+I+STT Sbjct: 708 QPQAARDRIVLRTSLAPNLPAMKADERSIRQAALTVLGNAIRVTEAGGQVIVSTTLAEQG 767 Query: 736 EVILRVRDTGVGMTNYELEKAMKPF----GQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 EV LRVRDTG GMT EL A++PF G +P G+ G GL L KA+V+AN G+ Sbjct: 768 EVALRVRDTGTGMTEDELMSALEPFGADLGAVPE-----GDEKGFGLTLTKALVEANRGR 822 Query: 792 FYIFSTPAKGTLIEIIFP 809 F I S +GTL+E++FP Sbjct: 823 FRISSRKDEGTLVEMLFP 840 >gi|239787555|emb|CAX84024.1| Sensor protein [uncultured bacterium] Length = 595 Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 136/377 (36%), Positives = 202/377 (53%), Gaps = 16/377 (4%) Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVF 500 I K E+ +L +E + I I +REG I N ++ GY V++++ R P + Sbjct: 216 IEGEKAMGELRKLHQSIEQSPLMIFITDREGRIEYVNPRFCEITGYSVDEVIGRNPRIL- 274 Query: 501 LEQNTPSVMNHYLTEILS--LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558 N+ + + E+ S L RQ +I + + S I P + L Sbjct: 275 ---NSGDMPREFFAELWSTLLSGRQFKAEI---KDRRKDGSSFWAQIVTSPVRNKEGLIT 328 Query: 559 H------DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 H DI++ KQ + A++ AE + K++ LA +SHE+RTPL AIIGFSE +K Sbjct: 329 HFVAVHEDITQRKQAEQATQAAREQAEIANRAKTELLANMSHELRTPLNAIIGFSEGMKL 388 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 Q FGPLG+ +Y EYA I+ SG +L ++ND+LD+S IE+GK L E +++ E ++ Sbjct: 389 QLFGPLGSAKYEEYAEDINASGQHLLKLINDILDVSAIEAGKTTLQEELLNVVEIAETSL 448 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 LV+ A + + + ++ +P +LAD R +KQI LN+LSNA+ FTP GG++ + Sbjct: 449 RLVRARAEKGSVSLFLEASDGLPPLLADGRRIKQILLNLLSNAVKFTPEGGRVTLKAGID 508 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + L V DTG+GM EL AM FGQ+ R EGTGLGLPL K +V+ + G F Sbjct: 509 EVGRLHLAVADTGIGMDEKELTLAMTEFGQVDGGLDRRHEGTGLGLPLTKGLVEIHGGIF 568 Query: 793 YIFSTPAKGTLIEIIFP 809 + S GT IFP Sbjct: 569 SVESKKGHGTTASAIFP 585 >gi|83312195|ref|YP_422459.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82947036|dbj|BAE51900.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 657 Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 100/254 (39%), Positives = 150/254 (59%), Gaps = 1/254 (0%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + HD++ + +L A +A+ + K+DFLA +SHE+RTPL AI+GFSE+I + F Sbjct: 399 IIAHDVTHRHHAEQRLREATAMAQAANRTKTDFLAAMSHELRTPLNAILGFSEIIAREMF 458 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GP+G+ RY Y I+ +G +L ++ND+LDIS+IE G L E V+ E V + LV Sbjct: 459 GPVGD-RYRIYGQDINSAGQHLLAMINDILDISRIEIGAFTLCVEQVNPHELVDSCLRLV 517 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A I +R +P ++ D R KQI +N+L NA+ FTP+GG + + S+ Sbjct: 518 TTRAEAAGIRLREDLPETLPSLMIDSRRTKQILINLLGNAVKFTPAGGSVTLRGALQSDG 577 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V DTG+GM+ ++ A+ PFGQ+ R EG GLGLPLAK++ + + G I Sbjct: 578 GMAFHVADTGIGMSEADIAIALSPFGQVDTGLDRRFEGAGLGLPLAKSLAELHGGSLEII 637 Query: 796 STPAKGTLIEIIFP 809 STP +GT + + FP Sbjct: 638 STPGEGTTVSVYFP 651 >gi|82523852|emb|CAI78595.1| signal transduction histidine kinase [uncultured candidate division OP8 bacterium] Length = 350 Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 101/240 (42%), Positives = 149/240 (62%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 + I S KS+ +A +SHE+RTPL AI+GFS IK + FGP+G+ +Y EY + I SG Sbjct: 104 RDILLSASRAKSEVIANMSHELRTPLNAILGFSSAIKCETFGPMGHTKYREYIDDISHSG 163 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 + +LD++ND+LD+S IE+GKM LH + +++ EA +V+ A E ++++ A N+ Sbjct: 164 SHLLDLINDILDVSAIEAGKMTLHEDSINVATIAKEAFHVVECLAVENQVMLAYDIAENL 223 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 P + D R KQI LN+ SNAI FTP GG + + L V DTG+GM+ EL+ Sbjct: 224 PPLFVDERRFKQIVLNLASNAIKFTPPGGSVTLGLRLDDQGRHTLSVTDTGIGMSADELK 283 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 A+ PFGQ+ + R +GTGLGLPL K +V+ + G I ST GT++ ++FP T+ Sbjct: 284 NALTPFGQLNSHLARRHDGTGLGLPLTKGLVELHDGTLDITSTKGTGTIVTVVFPATRTT 343 >gi|188581744|ref|YP_001925189.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium populi BJ001] gi|179345242|gb|ACB80654.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium populi BJ001] Length = 853 Score = 200 bits (508), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 191/740 (25%), Positives = 331/740 (44%), Gaps = 89/740 (12%) Query: 83 VRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP---NNHIGDLLKR 139 R W DA G L ++S P + A ++G +L ID + + L Sbjct: 188 ARLIWRSDAEGVLTQVSRTHP----DLAEALLGQSWA----MLAIDGVIEGAALTEALSA 239 Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 + T+ L + G ++++ P +FSGF GF I+ + PRA+ Sbjct: 240 RRTFRSVPLL--VRGRAYEHALEISGAPAGRATEDFSGFGGFAILG----ERSPRAI--- 290 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD--DVLKTE 257 + E + G S ++ + +++ +S + E+ A ++ +L Sbjct: 291 ---EEDAAAETESGGSDAPRDAEPVGGPD-------VEDGLS-VNEHAAFREVARILGLR 339 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 P L++E E + ++ T F T ES R +L+ Sbjct: 340 FAPDLSAEAV---EAGSADSATVSSVTP---FPTPPGRIGES----EARARAALT----- 384 Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 E ++ P+ VY + +A+ +FL LT Y + + AG L+ L + Sbjct: 385 ------ELLESLPLGVLVYRGSEILFASRAFLDLTGYPDLSALREAG-LAHLFRGLPPGE 437 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 PV +S+ +A + W E + A + + + P Sbjct: 438 REIAGPVPFAQSEGGTVALLVDRAGLVW--EGAPAELCLARAAPAAA--ALQLPAVPPNA 493 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF-GYPVEDILRKP 496 +R K +LE+ +G+ ++ EG ++ N + ++L +P E + + Sbjct: 494 ARSRAEK------------VLESLEEGVVTLDAEGRVVGLNPSAAELVHAHPKEVVGGRF 541 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCY 554 +F ++ P++ E D R++ G T +LR+ I +L + Y Sbjct: 542 ADLFAPESLPAL------ETAVTDSRRSGASEIHGVTPRTGAAALRLRIARLLGEDAPGY 595 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSH-----KSDFLARVSHEIRTPLTAIIGFSEV 609 ++ +I + ++ L A + A +E+S K++ LARVS EIR L AI+ +E+ Sbjct: 596 CASLREI---RDDEPALPAAGEPARREASEAEAEWKANALARVSREIRPSLNAILSLTEM 652 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + RF R Y + SG + +++DL D+++I++G+ L F ++L+E VS Sbjct: 653 MLSDRFDRADAERLEAYLREVRLSGGRIAGLIDDLRDLAEIQAGRGKLTFAELALNELVS 712 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 I+ Q A RI++RTS A ++P + AD+RS++Q L +L NAI T +GGQ+I+ST Sbjct: 713 SCIAAQQAQAARDRIVLRTSLAPDLPAMRADMRSIRQATLTVLGNAIRVTEAGGQVIVST 772 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 T + LRVRDTG GMT EL A++PF + + GE G GL L KA+V+AN Sbjct: 773 TRAERGGIALRVRDTGTGMTEDELMGALEPF-RADIAPAAEGEERGFGLTLTKALVEANR 831 Query: 790 GKFYIFSTPAKGTLIEIIFP 809 G+F I S +GTL+E++FP Sbjct: 832 GRFRITSRKDEGTLVEMLFP 851 >gi|46202135|ref|ZP_00053708.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 663 Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 127/364 (34%), Positives = 198/364 (54%), Gaps = 11/364 (3%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-----FTVFLEQNT-- 505 +L +I++ G+A+ + +++ N + ++ G P +I F L N Sbjct: 290 RLQAIIDNMPQGVAVFASDDALIALNESAIRMLGLPKAEITPGTIDISLFMALLAANDTP 349 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 P + LT LS +R+ E + T ++ +R +P L+ DI++ K Sbjct: 350 PGHHSAQLTADLSESIRERPEMVFEHFTPSGLIMEVRS--SSMPGGGLI-LSFTDITDRK 406 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L AK AE+ + K+ FLA +SHE+RTPL AIIGFSE++K++ FGPL Y Sbjct: 407 HIEQTLREAKDEAERGNRTKNTFLANISHELRTPLNAIIGFSEMMKHEIFGPLEPASYRA 466 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y + I SG +L+++ND+LD+SK E+G +L V + + + AI L+ A I Sbjct: 467 YVDDIHESGMHLLELINDILDMSKAEAGMTDLMETAVHVPDLIRAAIRLLNRRAENAAIS 526 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + N+P +LAD R ++QI LN+ SNA+ FT GG + I T VI RV DTG Sbjct: 527 LTEDLPPNLPTLLADERRLRQIILNLGSNAVKFTDDGGAVTIGAKVTEAGFVI-RVADTG 585 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +GMT ++++ M+PF Q + EG+GLGLPLAKA+V A+ G + S P +GT++ Sbjct: 586 IGMTPEDVQRVMEPFVQADTRLSRKYEGSGLGLPLAKALVIAHGGTLNLDSQPGRGTVVT 645 Query: 806 IIFP 809 + FP Sbjct: 646 VTFP 649 >gi|302382006|ref|YP_003817829.1| PAS/PAC sensor signal transduction histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302192634|gb|ADL00206.1| PAS/PAC sensor signal transduction histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 792 Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 127/400 (31%), Positives = 213/400 (53%), Gaps = 24/400 (6%) Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE- 490 G+ + + R + +++ +L +E+ SD + ++ G ++ N+A FG+ E Sbjct: 382 GVAMDITEARRARAQLQAAEGRLRDGIESVSDAFVLFDKHGRLILWNQAFKDAFGFADEA 441 Query: 491 -------DILRKPFTVFLEQNTPSVMNH--------YLTEILSLDLRQTLEKITLGSTKE 535 D L + + ++ + PS Y +L L R T + T+ + + Sbjct: 442 VRKGAQKDELNRIAALAIKADRPSPEGRAGAREVELYDGRVLQLAERFTGDGGTVITAAD 501 Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK-----NKLSHAKKIAEKESSHKSDFLA 590 + + + ++ S D E QEK K A AE + KS+FLA Sbjct: 502 VTAIRRQEVERQRSADSLRKTV--DELEASQEKLSLLARKYEIAMTRAEAANQAKSEFLA 559 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SHE+RTPL AI GFSE++ + FGPLG+ +Y YA+ I +SG +L ++ND+LD++KI Sbjct: 560 NMSHELRTPLNAINGFSEIMAGEMFGPLGHEKYKGYAHDILKSGQHLLSLINDILDMAKI 619 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710 E+GKM LH+E VSL E +AI L++ A + + + A ++P I AD R +KQ+ LN Sbjct: 620 EAGKMTLHYEAVSLTELCEDAIRLMRGKAQDCGLTLSLE-AGDVPEIEADYRGLKQVMLN 678 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 ++SNA+ FTP GG+I +S T + + + V DTG+G+ +L + +PF Q+ Sbjct: 679 LISNAVKFTPEGGEITVSVTRQNAVTMRIAVTDTGIGIAAADLARLAQPFEQVEGQHSKT 738 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +GTGLGL L K++++ + G+ + S P +GT + P+ Sbjct: 739 TQGTGLGLALTKSLIELHGGEMTMVSEPGEGTTVSFDIPI 778 >gi|167647393|ref|YP_001685056.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter sp. K31] gi|167349823|gb|ABZ72558.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter sp. K31] Length = 844 Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 103/240 (42%), Positives = 153/240 (63%), Gaps = 4/240 (1%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE + KS+FLA +SHE+RTPL AI GFSE++ N+ FGPLG+ RY Y+ I SG + Sbjct: 596 AEGANKAKSEFLANMSHELRTPLNAINGFSEIMMNEMFGPLGDQRYKGYSLDIHNSGQHL 655 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ND+LD+SKIE+GKMNL FEP+SL++ +A+ LV+ A + + F +P + Sbjct: 656 LALINDILDMSKIEAGKMNLKFEPLSLEDVTEDAVRLVRNRAEAAGLKLEIDFP-PLPEV 714 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYELE 754 AD R+VKQ+ LN+LSNAI FTP G+I++ + E V + V DTG+G+ +L Sbjct: 715 EADYRAVKQVLLNLLSNAIKFTPRAGRIVVRAEVRRDPLGERVRVSVTDTGIGIAAEDLA 774 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + +PF Q+ + +GTGLGL L K++V+ + G + STP +GT + I P+ + Sbjct: 775 RLARPFEQVESQHAKTTQGTGLGLALTKSLVEMHDGALEMTSTPGEGTTVSFILPISQSG 834 >gi|83311645|ref|YP_421909.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82946486|dbj|BAE51350.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 847 Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 104/250 (41%), Positives = 158/250 (63%), Gaps = 1/250 (0%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I+E + + +L AK+ A+ + K++FLA VSHE+RTPL A+IGFSEV+ + FGPLG Sbjct: 583 EIAEHIRAERELVAAKEQADLANRAKTEFLANVSHELRTPLNAVIGFSEVMAAEMFGPLG 642 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + RY+ Y N I SG +L ++ND+LDI+KIE+G+M E V E V+ AI +V+ A Sbjct: 643 SARYVGYVNDILASGRHLLAVINDILDIAKIEAGQMEFDMELVQPAEVVAAAIRIVESRA 702 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + +++ + A ++P + AD R + QI +N+LSN++ FTP GG + + T + V Sbjct: 703 DAGGLVLGSHIAEDVPALKADRRRLLQILVNLLSNSVKFTPEGGSVEV-TVEVLGDMVGF 761 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+GM++ E+ AM PF Q+ S R +GTGLGLPL +A V+ + G I S Sbjct: 762 TVSDTGIGMSDDEVVVAMLPFRQVDGSLSRRYDGTGLGLPLVRAFVELHGGHLDIVSRKG 821 Query: 800 KGTLIEIIFP 809 +GT + + P Sbjct: 822 EGTQVTVRLP 831 >gi|163867812|ref|YP_001609016.1| hypothetical protein Btr_0574 [Bartonella tribocorum CIP 105476] gi|161017463|emb|CAK01021.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476] Length = 562 Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 127/401 (31%), Positives = 203/401 (50%), Gaps = 41/401 (10%) Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 +P+ +P N IE + E + S+LE +DG+ ++ +G I S +RA Sbjct: 185 YPQTLPVNAIEQALIK----------EPAAVLSLLETATDGVLWLDEQGFIQSASRAALA 234 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS--TKEEKLLSL 541 L GY + ++ +PF+ F + ++ Y I Q L + TK K ++ Sbjct: 235 LMGYEINELRGQPFSSFFTLQSRFLVEKYFKLIRMKGKNQVLNRSETADLMTKSHKNRTV 294 Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 I I L Y++ + D KK+ +E + + + V HEIRTPL Sbjct: 295 LITIVFLAPQGNYAVMLRD------------RTKKVLSEEEKAEENKIVGVVHEIRTPLN 342 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI---------ES 652 A+IGF+E++K RFG + N RY Y I SG +L ++N+LL+ SKI +S Sbjct: 343 ALIGFAEIMKEGRFGSIENERYHGYLRDIISSGKHILSLINELLECSKINYSDSNNQVDS 402 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 ++ F+ +S A I+ ++ AN I++R ++P I + +QI N+L Sbjct: 403 SLISEQFDVISCLRA---TIAFLETQANHNGIIMRIVAPPHVPFIPVSQQMFRQIIWNLL 459 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 SNAI FT GGQII+ ++ E + + V D G+GM+ E+ A++P+GQ+ G+ Sbjct: 460 SNAIRFTSLGGQIIVHVSY-RKERIKISVSDNGIGMSEEEIAHALQPYGQVERKDGRSGD 518 Query: 773 ----GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGLP+ KAMV+ + G+F +FS P GT +E+ FP Sbjct: 519 SVFMGTGLGLPMCKAMVEESGGEFLLFSKPNHGTTVEMFFP 559 Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 80/155 (51%), Gaps = 10/155 (6%) Query: 60 ESVSNTNYLDSENTFVFDP--IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR 117 + +SN + F F P +PR FTW ID +G E+S+EL + +G + ++G Sbjct: 6 DELSNNELKCKQEAFCFIPELLPRP--FTWKIDHNGLFCEVSKELAEVVGPLSSSILGCG 63 Query: 118 LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177 +++ + + + ++ W + WP++G + ++ ++L+ALPI+ ++ G Sbjct: 64 FHELAHQFNDERYLVLSRFIEAAMPWSKEVVQWPVDGCSQWLDVELSALPIFDVKKQLKG 123 Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 FRGFG++ V ++ +L+ + L EI++ Sbjct: 124 FRGFGVLKVQEQRDE------KLETEMPRLTEIER 152 >gi|114707276|ref|ZP_01440173.1| probable two-component sensor histidine kinase protein [Fulvimarina pelagi HTCC2506] gi|114537157|gb|EAU40284.1| probable two-component sensor histidine kinase protein [Fulvimarina pelagi HTCC2506] Length = 507 Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 103/249 (41%), Positives = 155/249 (62%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ISE ++ + A++ AE + KS FLA +SHE+RTPL AI+GFSEV+ N+ FGPLG+ Sbjct: 245 ISELERSRILSDEARRRAEDANRAKSQFLATMSHELRTPLNAILGFSEVMMNEIFGPLGS 304 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P Y EY I SG +L ++N++LD+S++E+G+ L+ E V L ++ S V+L A Sbjct: 305 PNYKEYLTDIHSSGKHLLGVINEILDLSRVEAGQYALNEEAVDLSRIAADCASTVRLRAE 364 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 +KRI I+ F +P + D R+++QI LN+LSNA+ FTP G+II+ T+ + Sbjct: 365 DKRIAIQMHFEEGLPALWGDERALRQIVLNLLSNAVKFTPKSGEIILRVGWTAGGGQYVG 424 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D G G+ E+ + FGQ N+ + +GTGLGLP+ +A+V + G+F + S K Sbjct: 425 VSDNGAGIPQDEIPTVLASFGQGSNAIKNAEQGTGLGLPIVQALVKLHDGQFELSSREGK 484 Query: 801 GTLIEIIFP 809 GT + IFP Sbjct: 485 GTDVIAIFP 493 >gi|300023375|ref|YP_003755986.1| integral membrane sensor signal transduction histidine kinase [Hyphomicrobium denitrificans ATCC 51888] gi|299525196|gb|ADJ23665.1| integral membrane sensor signal transduction histidine kinase [Hyphomicrobium denitrificans ATCC 51888] Length = 553 Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 101/249 (40%), Positives = 159/249 (63%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ISE ++ A++ AE + KS FLA +SHE+RTPL AI+GFSEV++ + GP+G+ Sbjct: 255 ISELEEASAISDEARRRAEAANKAKSRFLATMSHELRTPLNAIMGFSEVMEKEILGPIGS 314 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 Y EYA+ I SGN +L I+N++LD+S+IE+G+ +LH E V L + + L+++ A+ Sbjct: 315 DTYREYAHNIYESGNHLLCIINEILDLSRIEAGRYDLHEETVRLTDIAEDCRRLIKIKAD 374 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K + I FA ++P + AD R+++QI LN+LSNA+ FTP GG+I+I+ HTS+ + Sbjct: 375 AKTLHIVEDFAPDLPHVWADPRAMRQICLNLLSNALKFTPRGGRIVITVGHTSDGGQFVT 434 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 + DTG G+ E+ + ++ FGQ + Q GTGLGLP+ + ++ + G F + S K Sbjct: 435 ISDTGPGIPKDEIPRVLQAFGQGSLAHQTAEGGTGLGLPIVQNLISLHGGTFDLQSELRK 494 Query: 801 GTLIEIIFP 809 GT + + P Sbjct: 495 GTEVTVTLP 503 >gi|218662726|ref|ZP_03518656.1| probable two-component sensor histidine kinase protein [Rhizobium etli IE4771] Length = 570 Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 115/314 (36%), Positives = 179/314 (57%), Gaps = 9/314 (2%) Query: 505 TPSVMNHYLTEILSLDLRQTLEK----ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 TP+V+ + +L+L + L + I+L L+ I +L S+ L+ Sbjct: 118 TPAVLVAFAPAVLALGAKSGLSRDLLEISLTGLFTATLVFFNYISDRLFKSNLRILSYQS 177 Query: 561 -----ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 I+E + K+ A++ AE+ + KS FLA +SHE+RTPL AI+GFSEV+ + Sbjct: 178 EKDDLIAELEVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVM 237 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GPL NP Y EYA I RSG +LD++N++LD+S+IE+GK L E +SL + + I +V Sbjct: 238 GPLANPTYKEYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMV 297 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 QL A K I I F +P I AD +S++Q+ LN+LSNA+ FTP GG+I + T+ Sbjct: 298 QLRARAKNIAISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGG 357 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + ++D G G+ E+ + FGQ + + +GTGLGLP+ +A++ + G+F + Sbjct: 358 GQYISIKDNGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLK 417 Query: 796 STPAKGTLIEIIFP 809 S +GT + I P Sbjct: 418 SKLREGTEVIAILP 431 >gi|209549672|ref|YP_002281589.1| integral membrane sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535428|gb|ACI55363.1| integral membrane sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 511 Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 116/314 (36%), Positives = 179/314 (57%), Gaps = 9/314 (2%) Query: 505 TPSVMNHYLTEILSLDLRQTLEK----ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 TP+V+ + IL+L + L + I+L L+ I +L S+ L+ Sbjct: 173 TPAVLVAFAPAILALAAKSGLSRDLLEISLTGLFTSTLVFFNYISDRLFKSNLRILSYQS 232 Query: 561 -----ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 I+E + K+ A++ AE+ + KS FLA +SHE+RTPL AI+GFSEV+ + Sbjct: 233 EKDDLIAELEVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVM 292 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GPL NP Y EYA I RSG +LD++N++LD+S+IE+GK L E +SL + + I +V Sbjct: 293 GPLANPTYKEYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMV 352 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 QL A K I I F +P I AD +S++Q+ LN+LSNA+ FTP GG+I + T+ Sbjct: 353 QLRARAKNIAISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGG 412 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + ++D G G+ E+ + FGQ + + +GTGLGLP+ +A++ + G+F + Sbjct: 413 GQYISIKDNGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLK 472 Query: 796 STPAKGTLIEIIFP 809 S +GT + I P Sbjct: 473 SKLREGTEVIAILP 486 >gi|83309666|ref|YP_419930.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82944507|dbj|BAE49371.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 755 Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 101/250 (40%), Positives = 156/250 (62%), Gaps = 1/250 (0%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS K+ +++L AK+ AE S KSDFLA +SHE+RTPL AIIGF+E + +Q GP+ Sbjct: 495 DISWRKRAEDELRAAKEQAESASRAKSDFLAGMSHELRTPLNAIIGFAETMYSQVLGPM- 553 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 RY EYA I SG +L I+ D+LD++KIE+G+M L P+ + V A+ L++ Sbjct: 554 PERYREYAGDISASGRHLLGIITDILDLAKIEAGRMELDDRPMEIAPVVDVALRLLRDRG 613 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + + + +P+++AD R ++Q+ +N+L+NA+ FTP GG++ +S + T + + L Sbjct: 614 AAAGLNLISDLPPGLPQVMADERRIRQVVINLLANAVKFTPFGGRVTVSASLTPDGGLEL 673 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+GMT E + ++PF Q+ R EGTGLGLP+ A+++ + G I S P Sbjct: 674 HVSDTGIGMTEEEAAQVIEPFVQVDARIARRHEGTGLGLPMVAAIMEMHGGAIAIASQPD 733 Query: 800 KGTLIEIIFP 809 GT + + FP Sbjct: 734 AGTRVTVTFP 743 >gi|46201797|ref|ZP_00208250.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 641 Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 97/251 (38%), Positives = 145/251 (57%), Gaps = 1/251 (0%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 HD++ + +L A +A+ + K+DFLA +SHE+RTPL AI+GFSE+I + FGP+ Sbjct: 386 HDVTHRHHAEQRLREATAMAQAANRTKTDFLAAMSHELRTPLNAILGFSEIISREMFGPV 445 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 G RY Y I+ +G +L ++ND+LDIS+IE G L EPV E + LV Sbjct: 446 GE-RYRTYGQDINAAGQHLLAMINDILDISRIEIGAFTLCIEPVDPHELAYSCLRLVGSR 504 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A + + ++P ++ D R KQI +N+L NA+ FTP GG++ + + + Sbjct: 505 AEAGNVDLSEDMPESLPHLMIDSRRTKQILINLLGNAVKFTPPGGKVTLRGETRDSGGIA 564 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG+GM+ ++ A+ PFGQ+ R EG GLGLPLAK++ + + G I S P Sbjct: 565 FHVIDTGIGMSEADMAVALSPFGQVDTGLDRRFEGAGLGLPLAKSLAELHGGSLEITSIP 624 Query: 799 AKGTLIEIIFP 809 KGT + + FP Sbjct: 625 GKGTTVSVYFP 635 >gi|86358053|ref|YP_469945.1| two-component sensor histidine kinase protein [Rhizobium etli CFN 42] gi|86282155|gb|ABC91218.1| probable two-component sensor histidine kinase protein [Rhizobium etli CFN 42] Length = 513 Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 115/314 (36%), Positives = 180/314 (57%), Gaps = 9/314 (2%) Query: 505 TPSVMNHYLTEILSLDLRQTLEK----ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 TP+V+ + +L+L + L + I+L + L+ I +L S+ L+ Sbjct: 175 TPAVLVAFAPAVLALGAKSGLSRDLLEISLTALFTTTLVFFNYISDRLFKSNLRILSYQS 234 Query: 561 -----ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 I+E + K+ A++ AE+ + KS FLA +SHE+RTPL AI+GFSEV+ + Sbjct: 235 EKDDLIAELEVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVM 294 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GPL NP Y EYA I RSG +LD++N++LD+S+IE+GK L E +SL + + I +V Sbjct: 295 GPLANPTYKEYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMV 354 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 QL A K I I F +P I AD +S++Q+ LN+LSNA+ FTP GG+I + T+ Sbjct: 355 QLRARAKNIAISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGG 414 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + ++D G G+ E+ + FGQ + + +GTGLGLP+ +A++ + G+F + Sbjct: 415 GQYISIKDNGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLK 474 Query: 796 STPAKGTLIEIIFP 809 S +GT + I P Sbjct: 475 SKLREGTEVIAILP 488 >gi|327189383|gb|EGE56551.1| putative two-component sensor histidine kinase protein [Rhizobium etli CNPAF512] Length = 511 Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 115/314 (36%), Positives = 179/314 (57%), Gaps = 9/314 (2%) Query: 505 TPSVMNHYLTEILSLDLRQTLEK----ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 TP+V+ + +L+L + L + I+L L+ I +L S+ L+ Sbjct: 173 TPAVLVAFAPAVLALGAKSGLSRDLLEISLTGLFTTTLVFFNYISDRLFKSNLRILSYQS 232 Query: 561 -----ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 I+E + K+ A++ AE+ + KS FLA +SHE+RTPL AI+GFSEV+ + Sbjct: 233 EKDDLIAELEVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVM 292 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GPL NP Y EYA I RSG +LD++N++LD+S+IE+GK L E +SL + + I +V Sbjct: 293 GPLANPTYKEYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMV 352 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 QL A K I I F +P I AD +S++Q+ LN+LSNA+ FTP GG+I + T+ Sbjct: 353 QLRARAKNIAISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGG 412 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + ++D G G+ E+ + FGQ + + +GTGLGLP+ +A++ + G+F + Sbjct: 413 GQYISIKDNGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLK 472 Query: 796 STPAKGTLIEIIFP 809 S +GT + I P Sbjct: 473 SKLREGTEVIAILP 486 >gi|116252525|ref|YP_768363.1| two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257173|emb|CAK08268.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 511 Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 115/314 (36%), Positives = 179/314 (57%), Gaps = 9/314 (2%) Query: 505 TPSVMNHYLTEILSLDLRQTLEK----ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 TP+V+ + +L+L + L + I+L L+ I +L S+ L+ Sbjct: 173 TPAVLAAFSPAVLALAAKSGLSRDLLEISLTGLVTTTLVFFNYISDRLFKSNLRILSYQS 232 Query: 561 -----ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 I+E + K+ A++ AE+ + KS FLA +SHE+RTPL AI+GFSEV+ + Sbjct: 233 EKDDLIAELEVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVM 292 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GPL NP Y EYA I RSG +LD++N++LD+S+IE+GK L E +SL + + I +V Sbjct: 293 GPLANPTYKEYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMV 352 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 QL A K I I F +P I AD +S++Q+ LN+LSNA+ FTP GG+I + T+ Sbjct: 353 QLRARAKNIAISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGG 412 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + ++D G G+ E+ + FGQ + + +GTGLGLP+ +A++ + G+F + Sbjct: 413 GQYISIKDNGPGIPEEEIPIVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLK 472 Query: 796 STPAKGTLIEIIFP 809 S +GT + I P Sbjct: 473 SKLREGTEVIAILP 486 >gi|190892130|ref|YP_001978672.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652] gi|190697409|gb|ACE91494.1| probable two-component sensor histidine kinase protein [Rhizobium etli CIAT 652] Length = 511 Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 115/314 (36%), Positives = 179/314 (57%), Gaps = 9/314 (2%) Query: 505 TPSVMNHYLTEILSLDLRQTLEK----ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 TP+V+ + +L+L + L + I+L L+ I +L S+ L+ Sbjct: 173 TPAVLVAFAPAVLALGAKSGLSRDLLEISLTGLFTTTLVFFNYISDRLFKSNLRILSYQS 232 Query: 561 -----ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 I+E + K+ A++ AE+ + KS FLA +SHE+RTPL AI+GFSEV+ + Sbjct: 233 EKDDLIAELEVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVM 292 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GPL NP Y EYA I RSG +LD++N++LD+S+IE+GK L E +SL + + I +V Sbjct: 293 GPLANPTYKEYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMV 352 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 QL A K I I F +P I AD +S++Q+ LN+LSNA+ FTP GG+I + T+ Sbjct: 353 QLRARAKNIAISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGG 412 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + ++D G G+ E+ + FGQ + + +GTGLGLP+ +A++ + G+F + Sbjct: 413 GQYISIKDNGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLK 472 Query: 796 STPAKGTLIEIIFP 809 S +GT + I P Sbjct: 473 SKLREGTEVIAILP 486 >gi|241205034|ref|YP_002976130.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858924|gb|ACS56591.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 511 Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 115/314 (36%), Positives = 179/314 (57%), Gaps = 9/314 (2%) Query: 505 TPSVMNHYLTEILSLDLRQTLEK----ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 TP+V+ + +L+L + L + I+L L+ I +L S+ L+ Sbjct: 173 TPAVLAAFSPAVLALAAKSGLSRDLLEISLTVAFTTTLVFFNYISDRLFKSNLRILSYQS 232 Query: 561 -----ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 I+E + K+ A++ AE+ + KS FLA +SHE+RTPL AI+GFSEV+ + Sbjct: 233 EKDDLIAELEVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVM 292 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GPL NP Y EYA I RSG +LD++N++LD+S+IE+GK L E +SL + + I +V Sbjct: 293 GPLANPTYKEYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMV 352 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 QL A K I I F +P I AD +S++Q+ LN+LSNA+ FTP GG+I + T+ Sbjct: 353 QLRARAKNIAISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGG 412 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + ++D G G+ E+ + FGQ + + +GTGLGLP+ +A++ + G+F + Sbjct: 413 GQYISIKDNGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLK 472 Query: 796 STPAKGTLIEIIFP 809 S +GT + I P Sbjct: 473 SKLREGTEVIAILP 486 >gi|197106142|ref|YP_002131519.1| sensor histidine kinase (non-motile and phage-resistance protein ) [Phenylobacterium zucineum HLK1] gi|196479562|gb|ACG79090.1| sensor histidine kinase (non-motile and phage-resistance protein ) [Phenylobacterium zucineum HLK1] Length = 621 Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 105/245 (42%), Positives = 154/245 (62%), Gaps = 5/245 (2%) Query: 573 HAKKI-AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 A+KI AE S KS+FLA +SHE+RTPL AI GFSE++ + +GPLG+ RY +YA I Sbjct: 363 EAEKIRAEGASQAKSEFLANMSHELRTPLNAINGFSEIMVAEMYGPLGDARYRDYARDIL 422 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 SG +L ++ND+LD+SKIE+GKM+L F+P SL+E +A+ LV+ A + + F Sbjct: 423 NSGQHLLALINDILDMSKIEAGKMSLRFDPCSLEEIAEDALRLVRNRAESAGLTLVLDFV 482 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGM 748 +P + AD R+VKQ+ LN+LSNAI FTP GG+I + + + V + V+DTG+G+ Sbjct: 483 -ELPEVEADYRAVKQVLLNLLSNAIKFTPRGGRITLRAERRDDPLGQRVRVSVQDTGIGI 541 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +LE+ +PF Q+ + +GTGLGL L KA V+ + G + S P +GT Sbjct: 542 APEDLERLARPFEQVESQHAKTQQGTGLGLALTKAFVELHGGLLDLKSAPGQGTTASFSL 601 Query: 809 PLYDT 813 P+ + Sbjct: 602 PVRQS 606 >gi|209885662|ref|YP_002289519.1| periplasmic sensor signal transduction histidine kinase [Oligotropha carboxidovorans OM5] gi|209873858|gb|ACI93654.1| periplasmic sensor signal transduction histidine kinase [Oligotropha carboxidovorans OM5] Length = 523 Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 105/249 (42%), Positives = 160/249 (64%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I E +Q K A+ AE + KS FLA++SHE+RTPL AI+GFSEV+K++ FGP Sbjct: 234 IGELEQAKAISDEARHRAEAANVSKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGPHAV 293 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P Y +Y+ I SG +L+++N++LD+S+IE+G+ L+ EP SL AV++ L++L A+ Sbjct: 294 PVYKDYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEPFSLVHAVADCHHLLKLRAS 353 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + I I +F ++P++ D R+ +QI LN+LSNAI FTP GG+I + T++ L Sbjct: 354 NRGITIHEAFEEDMPKLWGDERATRQIVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLI 413 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+DTG G+ + E+ + FGQ NS + +G GLGLP+AK+++D + G F + S Sbjct: 414 VKDTGSGIPDDEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLKSKLRI 473 Query: 801 GTLIEIIFP 809 GT + I FP Sbjct: 474 GTEVIITFP 482 >gi|154252383|ref|YP_001413207.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154156333|gb|ABS63550.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 523 Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 98/254 (38%), Positives = 163/254 (64%), Gaps = 5/254 (1%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSH----KSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 ++ E +++ K S +A + +S KS FLA +SHE+RTPL AI+GFSE++ + F Sbjct: 255 ELDETRKQLEKTSAELLVALQSASSADQAKSQFLATMSHELRTPLNAILGFSEIMAAETF 314 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GPL N RY +Y I +SG +L ++ND+LD +++++G+++LH E + L+EAV++ I ++ Sbjct: 315 GPLNNARYSDYVQDIFKSGKHLLSLINDVLDFTRVDAGELHLHEEDIDLEEAVTDTIRMI 374 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A + I + A ++P ++AD R ++Q+ LN+LSNA+ FTP GG++ I ++ Sbjct: 375 SAQAKAQNIALDYEIAADLPHLIADHRRIRQVLLNLLSNAVKFTPDGGEVHIGAL-VADG 433 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++LRV DTG+G+ + A++ FGQI + + EGTGLGLPLAK +++ + G I Sbjct: 434 AMLLRVTDTGIGIAAENIPLALERFGQIDSDLSRKYEGTGLGLPLAKCLMEHHGGCLDIA 493 Query: 796 STPAKGTLIEIIFP 809 S +GT + + FP Sbjct: 494 SELGRGTTVTVTFP 507 >gi|154253689|ref|YP_001414513.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154157639|gb|ABS64856.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 377 Score = 194 bits (492), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 100/246 (40%), Positives = 158/246 (64%), Gaps = 1/246 (0%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ +L+ A AE+ + KS+FLA +SHE+RTPL AIIGFS++I+ QRFG +GN RY Sbjct: 111 RKMTERLAWAFDNAERANEAKSNFLANMSHELRTPLNAIIGFSDIIRFQRFGSVGNSRYQ 170 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP-VSLDEAVSEAISLVQLYANEKR 683 +YA I+ SG +L I+ND+LD++KI++G + E S+ A+ A +V+ A + Sbjct: 171 DYAKDINESGIHLLSIINDILDLAKIDAGHGTMEQEAEFSVRSAIDCAERMVRSLAERQE 230 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 I + T+ A ++ R V+Q+ +N+LSNAI FT GG + ++ H N +++ + D Sbjct: 231 ISLSTAAAETSAYLVGVERMVRQVLINVLSNAIKFTERGGSVTVAAEHRPNGNLVVSISD 290 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+GM+ E++ A+ PFGQ ++ + GTGLGLPLAKAM+D + G+ + S KGT Sbjct: 291 TGIGMSPDEVKVALTPFGQSGSALSRKHPGTGLGLPLAKAMMDMHGGRLMVRSMVGKGTT 350 Query: 804 IEIIFP 809 + ++FP Sbjct: 351 VTLVFP 356 >gi|218682383|ref|ZP_03529984.1| probable two-component sensor histidine kinase protein [Rhizobium etli CIAT 894] Length = 468 Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 115/314 (36%), Positives = 179/314 (57%), Gaps = 9/314 (2%) Query: 505 TPSVMNHYLTEILSLDLRQTLEK----ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 TP+V+ + IL+L + L + I+L ++ I +L S+ L+ Sbjct: 130 TPAVLVAFAPAILALAAKSGLSRDLLEISLTGAFTTTVVFFNYISDRLFKSNLKILSYQS 189 Query: 561 -----ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 I+E + K+ A++ AE+ + KS FLA +SHE+RTPL AI+GFSEV+ + Sbjct: 190 EKDDLIAELEVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVM 249 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GPL NP Y EYA I RSG +LD++N++LD+S+IE+GK L E +SL + + I +V Sbjct: 250 GPLANPTYKEYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMV 309 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 QL A K I I F +P I AD +S++Q+ LN+LSNA+ FTP GG+I + T+ Sbjct: 310 QLRARAKNIAISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGG 369 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + ++D G G+ E+ + FGQ + + +GTGLGLP+ +A++ + G+F + Sbjct: 370 GQYISIKDNGPGIPEEEIPIVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLK 429 Query: 796 STPAKGTLIEIIFP 809 S +GT + I P Sbjct: 430 SKLREGTEVIAILP 443 >gi|298290750|ref|YP_003692689.1| multi-sensor signal transduction histidine kinase [Starkeya novella DSM 506] gi|296927261|gb|ADH88070.1| multi-sensor signal transduction histidine kinase [Starkeya novella DSM 506] Length = 770 Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 109/276 (39%), Positives = 173/276 (62%), Gaps = 7/276 (2%) Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 E++L++L ++K S +L M + + +N K AE + KS+FLA +SH Sbjct: 485 EKRLMALVADLRK----SQQTLEMQALQLAELAQNYADEKTK-AEDANRAKSEFLANMSH 539 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 E+RTPL AIIGFSE++++ FGPLG+ +Y EY I SG +LD++ND+LD+S+IE+G+ Sbjct: 540 ELRTPLNAIIGFSELMESGLFGPLGSDKYNEYCRDIRDSGRYLLDVINDILDMSRIEAGR 599 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714 M+L+ +PV LDE V+++I ++ + A+EK+I + + + AD R++KQI LN+LSN Sbjct: 600 MHLNLQPVELDEVVTDSIRVMSVRADEKQITVAADTDGAVS-LEADKRALKQITLNLLSN 658 Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 AI FTP G++ + T S +L + D+G+G+ L K KPF Q+ + +G+ Sbjct: 659 AIKFTPENGRVSVR-TRRSARAALLVIEDSGIGIPKAALAKIGKPFEQVESQFTKTHKGS 717 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GLGL +AK++V+ + G I S+ GT + I PL Sbjct: 718 GLGLAIAKSLVELHGGTMRIRSSEGVGTTVIIRLPL 753 >gi|90423355|ref|YP_531725.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] gi|90105369|gb|ABD87406.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] Length = 775 Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 100/252 (39%), Positives = 158/252 (62%), Gaps = 3/252 (1%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 K S K AE + KS FLA +SHE+RTPL AIIGFSE++ + FG LG+ +Y EY + Sbjct: 523 QKYSEEKNRAEDANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGSLGSEKYQEYCH 582 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I SG+ +L+++ND+LD+SKIE+G+M L EP L +SE++ +V A+ K++++R Sbjct: 583 DILTSGHYLLEVINDILDMSKIEAGRMKLDLEPFDLATTLSESLRVVSGRADNKQLMLRA 642 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 N+IP +LAD R++KQI +N+LSNA+ FTP GG++ + E+++L + DTG+G+ Sbjct: 643 DIDNDIP-VLADRRAIKQILVNLLSNAVKFTPDGGRVTVR-GRVFEEQIVLLIADTGIGI 700 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 L + +PF Q+ + G+GLGL +AK++ + + G + S GT++ + Sbjct: 701 AKQSLRRLGQPFEQVESQLTKTYHGSGLGLAIAKSLTNLHGGSMRLRSQLGVGTVVRVAL 760 Query: 809 PLYDTSHPHDCI 820 P D + D I Sbjct: 761 P-RDAAKAGDKI 771 >gi|220924683|ref|YP_002499985.1| histidine kinase [Methylobacterium nodulans ORS 2060] gi|219949290|gb|ACL59682.1| histidine kinase [Methylobacterium nodulans ORS 2060] Length = 513 Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 104/248 (41%), Positives = 155/248 (62%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E +Q K A++ AE+ + KS FLA +SHE+RTPL AI+GFSEV+KN+ FGP +P Sbjct: 239 GELEQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMKNEVFGPHASP 298 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 Y EY+ I SG +L+++N++LD+S+IE+G+ L+ E V L V E ++ L A Sbjct: 299 SYQEYSTDIHDSGMHLLNLINEILDLSRIEAGRYELNEEAVQLAYVVEECRHMMALRARA 358 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 K + R ++PR+ AD R+V+Q+ LNILSNAI FTP GG+I I TS+ + + Sbjct: 359 KNQVFRELVDPSLPRLWADERAVRQVVLNILSNAIKFTPPGGEITIKVGWTSSGGQYVSI 418 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +DTG G+ E+ M FG+ + + +G+GLGLP+ K +VD + G F + S P +G Sbjct: 419 KDTGPGIPEDEIPTVMSSFGRGSLAIKTAEQGSGLGLPIVKGLVDLHGGGFRLKSKPREG 478 Query: 802 TLIEIIFP 809 T + + FP Sbjct: 479 TEVIVTFP 486 >gi|158424746|ref|YP_001526038.1| PAS protein [Azorhizobium caulinodans ORS 571] gi|158331635|dbj|BAF89120.1| PAS protein [Azorhizobium caulinodans ORS 571] Length = 763 Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 100/258 (38%), Positives = 156/258 (60%), Gaps = 4/258 (1%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H + + K S K AE + KS+FLA +SHE+RTPL AIIGFSE++++ FGPL Sbjct: 505 HQAQQLAELAEKYSEEKTRAEDANRAKSEFLANMSHELRTPLNAIIGFSEIMESGMFGPL 564 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 G+ +Y EY + I SG +LD++ND+LD+SKIE+G+M L E + LDE +++A+ + + Sbjct: 565 GSDKYREYCSDIKGSGTYLLDVINDILDMSKIEAGRMQLELEDIRLDEIIADAMRVTAVK 624 Query: 679 ANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 +EK++ + A + R D R++KQI LN+LSNA+ FTP GG + + V Sbjct: 625 GDEKQLDMTAQVGAGQVMR--GDRRALKQILLNLLSNAVKFTPEGGHVAVRAKVNGGAAV 682 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 I + DTG+G+ + L K +PF Q+ + +G+GLGL +AK++ + + G I ST Sbjct: 683 IA-IEDTGIGIPRHALNKIGRPFEQVESQFTKTHKGSGLGLAIAKSLAELHGGSMRIRST 741 Query: 798 PAKGTLIEIIFPLYDTSH 815 GT + + P++ H Sbjct: 742 EGAGTTVVVRLPIHGVPH 759 >gi|154251811|ref|YP_001412635.1| histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154155761|gb|ABS62978.1| histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 288 Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 107/268 (39%), Positives = 157/268 (58%), Gaps = 4/268 (1%) Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + YS + ++ ++ + L AK A+ S KS+FLA +SHE+RTPL AIIGFSE I Sbjct: 16 AGYSTNLGELMSRQRSEVALRSAKIEADMASRTKSEFLANMSHELRTPLNAIIGFSEFI- 74 Query: 612 NQRFGPLGNP--RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 Q G P + EYA +I +G +L+I++D+LDI+KIESG +L EP + E V Sbjct: 75 -QHIAASGKPSEKTGEYATHIAGAGRHLLNIISDILDIAKIESGTFSLATEPYDVRELVD 133 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 I L++ EK+ ++ ++P + D R +KQ+ +N+LSNA FT GG+I++ Sbjct: 134 ACIVLIEPRIREKKQVLEIKADPSLPEVPVDARRIKQVLINLLSNAHKFTGEGGRIVLVA 193 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 T T + V + V DTG+GMT ++ A+ PFGQ+ S EGTGLGLP+A A+ + Sbjct: 194 TQTPDGGVTIAVADTGIGMTKEQISHALTPFGQVQASYARGHEGTGLGLPIAAALTTLHG 253 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 G+F IFS P KGT + P + P Sbjct: 254 GEFQIFSEPGKGTTVFFTLPPAAPARPQ 281 >gi|154245571|ref|YP_001416529.1| PAS/PAC sensor signal transduction histidine kinase [Xanthobacter autotrophicus Py2] gi|154159656|gb|ABS66872.1| PAS/PAC sensor signal transduction histidine kinase [Xanthobacter autotrophicus Py2] Length = 770 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 97/252 (38%), Positives = 156/252 (61%), Gaps = 2/252 (0%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H + + K S + AE + KS+FLA +SHE+RTPL AIIGFSE++++ FGPL Sbjct: 504 HQAQQLAELAEKYSEERNKAEDANRAKSEFLANMSHELRTPLNAIIGFSEIMESGMFGPL 563 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 G+ +Y EY I SG +LD++ND+LD+SKIE+G+M L E ++LD+ +++A+ + + Sbjct: 564 GSEKYAEYCTDIKGSGTYLLDVINDILDMSKIEAGRMQLEVEDLALDDIIADALRVTAVN 623 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +EK I + + A N+ I D R++KQI LN+LSNA+ FTP GG I + + + Sbjct: 624 GDEKNIAMTMAAAPNLA-IKGDRRALKQILLNLLSNAVKFTPEGGNIAVK-ARINGAAAV 681 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + + DTG+G+ L + +PF Q+ + +G+GLGL +AK++V+ + G I S Sbjct: 682 IAIEDTGIGIAKDALARIGRPFEQVESQFTKTHKGSGLGLAIAKSLVELHGGAMRIRSVE 741 Query: 799 AKGTLIEIIFPL 810 +GT + + P+ Sbjct: 742 GRGTTVIVRLPV 753 >gi|316934854|ref|YP_004109836.1| integral membrane sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] gi|315602568|gb|ADU45103.1| integral membrane sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] Length = 530 Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 104/249 (41%), Positives = 156/249 (62%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E +Q K A+ AE + KS FLA++SHE+RTPL AI+GFSEV+K++ FG Sbjct: 240 IAELEQSKAISDEARHRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHAV 299 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P Y +Y+ I SG +L+++N++LD+S+IE+G+ L+ E +SL VS+ L++L A Sbjct: 300 PAYKDYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAISLVHVVSDCHHLLKLRAT 359 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + I I F +PRI D R+V+Q+ LN+LSNAI FTP GG+I + T++ L Sbjct: 360 SRGITIHEVFEQGMPRIWGDERAVRQVVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLS 419 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+DTG G+ E+ + FGQ NS + +G GLGLP+AK+++D + G F + S Sbjct: 420 VKDTGSGIPEEEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLKSKLRI 479 Query: 801 GTLIEIIFP 809 GT + + FP Sbjct: 480 GTEVIVTFP 488 >gi|295688681|ref|YP_003592374.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter segnis ATCC 21756] gi|295430584|gb|ADG09756.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter segnis ATCC 21756] Length = 843 Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 99/241 (41%), Positives = 150/241 (62%), Gaps = 4/241 (1%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE + KS+FLA +SHE+RTPL AI GFSE++ N+ FGPLG+ RY Y+ I SG + Sbjct: 595 AEGANRAKSEFLANMSHELRTPLNAINGFSEIMMNEMFGPLGDERYKGYSQDIHSSGQHL 654 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ND+LD+SKIE+GKMNL FEP+ +++ +A+ LV+ A + +R F +P I Sbjct: 655 LALINDILDMSKIEAGKMNLKFEPMHVEDVAEDAVRLVRNRAEAAGLNLRIDF-PPLPEI 713 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIIST---THTSNEEVILRVRDTGVGMTNYELE 754 AD R++KQ+ LN+LSNAI FTP G + ++ + V + V DTG+G+ +L Sbjct: 714 EADYRAIKQVLLNLLSNAIKFTPRAGSVTLTAEVRRDAFGDMVRVSVADTGIGIAKEDLA 773 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + +PF Q+ + +GTGLGL L K+++ + G + STP +GT + P+ + Sbjct: 774 RLARPFEQVESQFSKTTQGTGLGLALTKSLISMHDGALEMTSTPGEGTTVSFALPIRQSE 833 Query: 815 H 815 H Sbjct: 834 H 834 >gi|154251412|ref|YP_001412236.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154155362|gb|ABS62579.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 600 Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 103/241 (42%), Positives = 151/241 (62%), Gaps = 2/241 (0%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 K + K AE + KS+FLA +SHE+RTPL AIIGFSE++++ FG LG+P+Y EYA Sbjct: 358 KYASEKTRAEAANRSKSEFLANMSHELRTPLNAIIGFSEIMESGLFGELGSPKYKEYAGD 417 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG +L+++ND+LD+SKIE+G+M L +P+ L E V E++ LV A ++ I Sbjct: 418 IHASGTHLLELINDILDMSKIEAGRMTLETQPLELSEVVEESLRLVSGRAEVAKVHIANE 477 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 +P + AD R+VKQ+ LN+LSNA+ FTP+GG I + TS V + V DTG+G+ Sbjct: 478 M-GPLPTVDADKRAVKQVLLNLLSNAVKFTPAGGSIHLR-GETSGRFVTISVEDTGIGIP 535 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L K +PF Q+ + +GTGLGL L++++V+ + G + ST GT + P Sbjct: 536 ASALPKIGRPFEQVESQHSKSHKGTGLGLALSRSLVELHGGALVLESTEGVGTKVSFTLP 595 Query: 810 L 810 L Sbjct: 596 L 596 >gi|240850020|ref|YP_002971413.1| sensory box histidine kinase [Bartonella grahamii as4aup] gi|240267143|gb|ACS50731.1| sensory box histidine kinase [Bartonella grahamii as4aup] Length = 568 Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 131/405 (32%), Positives = 200/405 (49%), Gaps = 37/405 (9%) Query: 419 EKANQFP--ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 E A Q P + +P N IE V E + S+L+ +DG+ ++ EG I S Sbjct: 184 ETAIQLPYTQTLPVNAIEQALVK----------EPAAVLSLLDTATDGVLWLDEEGFIQS 233 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS--TK 534 +RA L GY + ++ +P + + + Y I + Q L + TK Sbjct: 234 ASRAALALMGYEINELRGQPLSSLFTLQSRFFVEKYFKSIRAEGKNQVLNRRETADLMTK 293 Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 K +++ I I L Y++ + D + + S KK E D + V H Sbjct: 294 NHKNITVLITIVFLAQQGNYAVMLRD-----RTQTVPSGGKKAEE-------DKIVGVVH 341 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 EIRTPL A+IGF+E+++ RFG + N RY Y I SG +L ++N LL+ SKI Sbjct: 342 EIRTPLNALIGFAEIMREGRFGSIENERYRGYLRDIISSGKHILLLINQLLECSKINYSG 401 Query: 655 MNLHFEPVSLDE------AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708 N + + E + I+ ++ AN+ I++R ++P I + +QI Sbjct: 402 SNNQIDSSIISETFDVISCLRATIAFLETQANQNGIIMRIVAPPHVPFIPVSQQVFRQII 461 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 N+LSNAI FTP GGQII+ ++ E V + V D G+GM E+ +A+KP+GQ+ Sbjct: 462 WNLLSNAIRFTPLGGQIIVHVSY-RKERVKISVSDNGIGMNEEEIVQALKPYGQVERKDG 520 Query: 769 IRGE----GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 G+ GTGLGLP+ KAMV+ G+F +FS P GT +E+ FP Sbjct: 521 RSGDSAFIGTGLGLPMCKAMVEERGGQFLLFSKPNHGTTVEMFFP 565 Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 84/161 (52%), Gaps = 9/161 (5%) Query: 64 NTNYLDSEN-TFVFDP--IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD 120 NTN L + F F P +PR FTW ID +G E+S+EL + +G + ++G + Sbjct: 11 NTNELKCQQEAFRFTPELLPRP--FTWEIDHNGLFCEVSKELAEVVGPLSSSILGCSFRE 68 Query: 121 VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG 180 ++ + D + ++ W + WP++G ++ ++L+ALPI+ ++ GFRG Sbjct: 69 LAHQFNDDRYLVLSHFIEAAMPWSKEIVQWPVDGCLQWLDVELSALPIFDVKKQLKGFRG 128 Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG--HSSVEK 219 FG++ + + + R ++L+ + L EI++ H EK Sbjct: 129 FGVLKIRKKVQEKR--DEKLETEMPCLTEIERSAFHEIAEK 167 >gi|299133557|ref|ZP_07026751.1| multi-sensor signal transduction histidine kinase [Afipia sp. 1NLS2] gi|298591393|gb|EFI51594.1| multi-sensor signal transduction histidine kinase [Afipia sp. 1NLS2] Length = 812 Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 103/245 (42%), Positives = 153/245 (62%), Gaps = 2/245 (0%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 K + K+ AE+ + KS FLA +SHE+RTPL AIIGFSEV+ FGPLG+ RY EY Sbjct: 519 QKYAEEKRRAEEANQTKSKFLANMSHELRTPLNAIIGFSEVMGRGMFGPLGSGRYQEYCQ 578 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I SGN +LD++ND+LD+SKIE+G+M L E + L E VSE+ + +A+ KR+ + + Sbjct: 579 DILTSGNYLLDVINDVLDMSKIEAGRMKLDPEKLDLAETVSESTRVASSWADGKRLTLDS 638 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 IP I+AD R++KQI +N+LSNA+ FTP GG+I++ + + V++ + DTG+G+ Sbjct: 639 RIDGAIP-IVADRRAMKQILVNLLSNAVKFTPDGGRIVVR-SRIIGDRVMVTIADTGIGI 696 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 L + PF Q+ + G+GLGL +AK++V + G + S GT++ I Sbjct: 697 PKEALARLGCPFEQVESQLTKSYHGSGLGLAIAKSLVQLHSGSMKLRSQLHIGTVVRINL 756 Query: 809 PLYDT 813 P T Sbjct: 757 PCAVT 761 >gi|192290576|ref|YP_001991181.1| integral membrane sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192284325|gb|ACF00706.1| integral membrane sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 531 Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 103/249 (41%), Positives = 156/249 (62%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E +Q K A+ AE + KS FLA++SHE+RTPL AI+GFSEV+K++ FG Sbjct: 240 IAELEQSKAISDEARHRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHAV 299 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P Y +Y+ I SG +L+++N++LD+S+IE+G+ L+ E +SL V++ L++L A Sbjct: 300 PAYKDYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAISLVHVVTDCHHLLKLRAT 359 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + I I F +PRI D R+V+Q+ LN+LSNAI FTP GG+I + T++ L Sbjct: 360 SRGITIHEVFEQGMPRIWGDERAVRQVVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLS 419 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+DTG G+ E+ + FGQ NS + +G GLGLP+AK+++D + G F + S Sbjct: 420 VKDTGSGIPEEEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLKSKLRI 479 Query: 801 GTLIEIIFP 809 GT + + FP Sbjct: 480 GTEVIVTFP 488 >gi|39935041|ref|NP_947317.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris CGA009] gi|39648892|emb|CAE27413.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] Length = 532 Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 103/249 (41%), Positives = 156/249 (62%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E +Q K A+ AE + KS FLA++SHE+RTPL AI+GFSEV+K++ FG Sbjct: 241 IAELEQSKAISDEARHRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHAV 300 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P Y +Y+ I SG +L+++N++LD+S+IE+G+ L+ E +SL V++ L++L A Sbjct: 301 PAYKDYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAISLVHVVTDCHHLLKLRAT 360 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + I I F +PRI D R+V+Q+ LN+LSNAI FTP GG+I + T++ L Sbjct: 361 SRGITIHEVFEQGMPRIWGDERAVRQVVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLS 420 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+DTG G+ E+ + FGQ NS + +G GLGLP+AK+++D + G F + S Sbjct: 421 VKDTGSGIPEEEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLKSKLRI 480 Query: 801 GTLIEIIFP 809 GT + + FP Sbjct: 481 GTEVIVTFP 489 >gi|170740792|ref|YP_001769447.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] gi|168195066|gb|ACA17013.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] Length = 512 Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 105/248 (42%), Positives = 154/248 (62%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E +Q K A++ AE+ + KS FLA +SHE+RTPL AI+GFSEV+KN+ FGP +P Sbjct: 239 GELEQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMKNEVFGPHASP 298 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 Y EY+ I SG +L+++N++LD+S+IE+G+ L+ E V L V E ++ L A Sbjct: 299 SYQEYSTDIHESGLHLLNLINEILDLSRIEAGRYELNEEAVQLAYVVEECRHMMGLRARA 358 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 K R ++PR+ AD R+V+QI LNILSNAI FTP GG+I I TS+ + + Sbjct: 359 KNQNFRELVDPSLPRLWADERAVRQIVLNILSNAIKFTPPGGEITIKVGWTSSGGQYVSI 418 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +DTG G+ E+ M FG+ + + +G+GLGLP+ K +VD + G F + S P +G Sbjct: 419 KDTGPGIPEDEIPTVMSSFGRGSLAIKTAEQGSGLGLPIVKGLVDLHGGGFQLKSKPREG 478 Query: 802 TLIEIIFP 809 T + + FP Sbjct: 479 TEVIVTFP 486 >gi|86750506|ref|YP_487002.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris HaA2] gi|86573534|gb|ABD08091.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris HaA2] Length = 530 Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 104/249 (41%), Positives = 156/249 (62%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I E +Q K A+ AE + KS FLA++SHE+RTPL AI+GFSEV+K++ FG Sbjct: 240 IGELEQAKAISDEARHRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHAV 299 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P Y EY+ I SG +L+++N++LD+S+IE+G+ L+ E +SL V++ L++L A+ Sbjct: 300 PVYKEYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAISLVHVVTDCHHLLKLRAS 359 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + I I F +PRI D R+V+Q+ LN+LSN+I FTP GG+I + T++ L Sbjct: 360 SRGITIHEVFEQGMPRIWGDERAVRQVVLNLLSNSIKFTPQGGEIWLKVGWTASGGQYLS 419 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+DTG G+ E+ + FGQ NS + +G GLGLP+AK++VD + G F + S Sbjct: 420 VKDTGSGIPEEEIPVVLASFGQGSNSIKSAEQGAGLGLPIAKSLVDMHGGTFTLKSKLRI 479 Query: 801 GTLIEIIFP 809 GT + + FP Sbjct: 480 GTEVIVTFP 488 >gi|192290539|ref|YP_001991144.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192284288|gb|ACF00669.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 769 Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 95/241 (39%), Positives = 155/241 (64%), Gaps = 2/241 (0%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 K + K+ AE+ + KS FLA +SHE+RTPL AIIGFSE++ + FG LG+ +Y EY + Sbjct: 521 RKYADEKRRAEEANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGTLGSEKYQEYCH 580 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I SG+ +L+++ND+LD+SKIE+G+M L EP+ L + + E++ +V A K + +R+ Sbjct: 581 DIMTSGHYLLEVINDILDMSKIEAGRMRLEMEPLDLAKTIGESVKVVAGRAEHKHLELRS 640 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + IP I+AD R++KQI +N+LSNA+ FTP G++ + H + ++L + DTG+G+ Sbjct: 641 ELNDQIP-IVADRRAIKQILINLLSNAVKFTPDAGRVTVR-GHVAGGSIVLMIADTGIGI 698 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 L + +PF Q+ + G+GLGL +AK++V+ + G + ST GT++ + Sbjct: 699 PPQSLRRLGQPFEQVESQLTKSYHGSGLGLAIAKSLVNLHGGSMRLRSTLGAGTVVMVSL 758 Query: 809 P 809 P Sbjct: 759 P 759 >gi|288961571|ref|YP_003451881.1| two-component sensor histidine kinase [Azospirillum sp. B510] gi|288913851|dbj|BAI75337.1| two-component sensor histidine kinase [Azospirillum sp. B510] Length = 552 Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 101/236 (42%), Positives = 150/236 (63%), Gaps = 1/236 (0%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 +A+++A + ++ DFLARVSHE RTPL AIIGFSE+IK+Q FGP PRY +YA I Sbjct: 316 NAERLAAALAVNR-DFLARVSHEFRTPLNAIIGFSEIIKDQMFGPDAGPRYADYARDIHT 374 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG +L +++D+LD+S++++GK L E V A AI +V A +K I + Sbjct: 375 SGQHLLTLIDDILDLSRLQAGKFALLMEDVDPVAAAEWAIRIVTPQAEQKSIHLEIKRPP 434 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 + + AD R++KQ+ LN+LSNA+ FTP G++++S ++ I+R+ DTG+GMT E Sbjct: 435 SPTLVRADERALKQMLLNLLSNALKFTPENGRVLVSVGRGTHGRCIVRITDTGIGMTAEE 494 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 L +A PFGQ G GTGLGLP+ K++++A+ G I S P +G+ I + F Sbjct: 495 LRQASVPFGQTAALVAHPGRGTGLGLPIVKSLIEAHGGSLRIDSRPGQGSQITLEF 550 >gi|39935007|ref|NP_947283.1| sensor histidine kinase pleC [Rhodopseudomonas palustris CGA009] gi|39648858|emb|CAE27379.1| sensor histidine kinase, possible pleC [Rhodopseudomonas palustris CGA009] Length = 779 Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 95/241 (39%), Positives = 155/241 (64%), Gaps = 2/241 (0%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 K + K+ AE+ + KS FLA +SHE+RTPL AIIGFSE++ + FG LG+ +Y EY + Sbjct: 531 RKYADEKRRAEEANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGTLGSEKYQEYCH 590 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I SG+ +L+++ND+LD+SKIE+G+M L EP+ L + + E++ +V A K + +R+ Sbjct: 591 DIMTSGHYLLEVINDILDMSKIEAGRMRLEMEPLDLAKTIGESVKVVAGRAEHKHLELRS 650 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + IP I+AD R++KQI +N+LSNA+ FTP G++ + H + ++L + DTG+G+ Sbjct: 651 ELNDQIP-IVADRRAIKQILINLLSNAVKFTPDAGRVTVR-GHLAGGSIVLMIADTGIGI 708 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 L + +PF Q+ + G+GLGL +AK++V+ + G + ST GT++ + Sbjct: 709 PPQSLRRLGQPFEQVESQLTKSYHGSGLGLAIAKSLVNLHGGSMRLRSTLGAGTVVMVSL 768 Query: 809 P 809 P Sbjct: 769 P 769 >gi|15888325|ref|NP_354006.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] gi|15155995|gb|AAK86791.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] Length = 778 Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 104/264 (39%), Positives = 165/264 (62%), Gaps = 13/264 (4%) Query: 557 TMHDIS----EWKQEKNKLSHAKK--IAEKESSH-----KSDFLARVSHEIRTPLTAIIG 605 T+ D+S + +++K +LS A +AEKE + KS+FLA +SHE+RTPL AI+G Sbjct: 507 TIGDLSASQHKLERQKTELSDANANYLAEKERAQAANRAKSEFLANMSHELRTPLNAILG 566 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE+++N+ FGP+G+P+Y EYA I SG +L+++ND+LD+SKIE+G M ++ E + L Sbjct: 567 FSEILQNEMFGPVGSPKYSEYARDIHDSGKHLLNVINDILDMSKIEAGHMRINRETIDLA 626 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + E + L + A +K I ++ + + D R++KQI LNILSNA+ FT GG+I Sbjct: 627 PLIEETLRLTAIQAEQKNITVQQKVCAGLT-MQGDRRAMKQIMLNILSNAVKFTGDGGRI 685 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + TH +IL + DTG+G+ L+K +PF Q+ + G+GLGL +++++V Sbjct: 686 ALR-THVHEAAMILTIADTGIGIPAQALQKIGQPFEQVQSQYAKSQGGSGLGLAISRSLV 744 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + G I S +GT++ II P Sbjct: 745 KLHGGTMKIRSCEGRGTVVTIIIP 768 >gi|323136675|ref|ZP_08071756.1| integral membrane sensor signal transduction histidine kinase [Methylocystis sp. ATCC 49242] gi|322397992|gb|EFY00513.1| integral membrane sensor signal transduction histidine kinase [Methylocystis sp. ATCC 49242] Length = 511 Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 102/249 (40%), Positives = 155/249 (62%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E +Q K A++ AE+ + KS FLA +SHE+RTPL AI+GFSEV+K + FGP N Sbjct: 239 ITELEQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVLKGELFGPHAN 298 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P Y +Y+N I SG +L ++N++LD+S++E+G+ L E VSL E L+ + A Sbjct: 299 PAYRDYSNDIHSSGQHLLMLINEILDLSRVEAGRYELKEESVSLVGVAQECRHLLTIRAQ 358 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 ++ I + ++PRI AD R+V+Q+ LN+L+NAI FTP GGQ+ I TS + Sbjct: 359 KRDIRMIEVVEPSLPRIWADERAVRQVILNLLTNAIKFTPQGGQVTIKVGWTSAGGQYIA 418 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 ++D G G+ E+ M FG+ +Q+ EGTGLGLP+ K +V+ + G+F + S + Sbjct: 419 IKDNGPGIPEDEIAVVMSSFGRGMLAQKNADEGTGLGLPIVKGLVELHGGQFVLKSKVRE 478 Query: 801 GTLIEIIFP 809 GT ++FP Sbjct: 479 GTDAIVVFP 487 >gi|144901258|emb|CAM78122.1| sensory transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 975 Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 102/263 (38%), Positives = 159/263 (60%), Gaps = 4/263 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT DI++ K+ + L A+ AE+ + K+ FLA +SHE+RTPL AIIGFSE++K++ F Sbjct: 701 LTFTDITDRKKVEVTLREARDAAERGNRAKATFLANISHELRTPLNAIIGFSELMKHEIF 760 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GPL P Y Y + + SG +L+++ND+LD+SK E+G +L PV + V ++ ++ Sbjct: 761 GPLQPPAYRSYVDDVHESGMHLLELINDILDMSKAEAGMTDLVESPVDVAAVVRASLRMM 820 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A+ I + + + + AD R ++QI LN+LSNA+ FT GG + + T Sbjct: 821 DKRASANGISLEADLPDGLAFLRADERRIRQILLNLLSNAVKFTDDGGMVRV-TAQVDGR 879 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +++ V DTG+GMT +++K M+PF Q + EGTGLGLPL KA+V+A+ G + Sbjct: 880 GMVIEVIDTGIGMTPEDMDKVMEPFVQADTRLSRKYEGTGLGLPLTKALVNAHGGTMELH 939 Query: 796 STPAKGTLIEIIFP---LYDTSH 815 S P GT + + FP + D +H Sbjct: 940 SIPDHGTTVTVTFPPERVIDDTH 962 >gi|154252152|ref|YP_001412976.1| multi-sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154156102|gb|ABS63319.1| multi-sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 798 Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 94/249 (37%), Positives = 159/249 (63%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ + L A + AE + K+ FLA +SHE+RTPL AIIGFSE++ + FGPLG+ R Sbjct: 536 ERRRAEEGLRQATETAEMANRAKTKFLANMSHELRTPLNAIIGFSEIMSQEMFGPLGSDR 595 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y EY N I SG +L++++D+LDISKIE+G+ L + + + + ++ +++ EK Sbjct: 596 YREYTNDIHGSGRHLLNVIDDILDISKIEAGRYVLEEDEIDMAHVLKWSVEMMRARTLEK 655 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 R + IP + AD R+++QI LN+LSNA FTP+ G+I ++ + ++++ V Sbjct: 656 RQNVNLHLPEAIPNVRADQRAMRQIMLNLLSNASKFTPAEGRIDLNVSRNDAGDLMVSVA 715 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D+G+G+ +L++ ++PFGQ+ ++ + GTGLGLP+ K++++ + G F + ST GT Sbjct: 716 DSGIGIPRNKLDEVLEPFGQVDDTSARQHGGTGLGLPITKSLIEMHGGSFTLESTLGAGT 775 Query: 803 LIEIIFPLY 811 +IFP + Sbjct: 776 TATMIFPAH 784 >gi|254502393|ref|ZP_05114544.1| hypothetical protein SADFL11_2432 [Labrenzia alexandrii DFL-11] gi|222438464|gb|EEE45143.1| hypothetical protein SADFL11_2432 [Labrenzia alexandrii DFL-11] Length = 756 Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 98/244 (40%), Positives = 153/244 (62%), Gaps = 2/244 (0%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 K K AE + KS+FLA +SHE+RTPL AIIGFS+++ + FGPLG RY +Y Sbjct: 506 KYQEEKTRAEAANQAKSEFLANISHELRTPLNAIIGFSDIMTQEMFGPLGTDRYADYCKD 565 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG +L+++ND+LD+SKIE+G+M++ E V+ EA +A ++ A+EK I+I Sbjct: 566 IYSSGTYLLNVINDILDMSKIEAGRMSIETEVVNASEAAEDAARIITGAASEKNIVISAD 625 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 A+N+ + D R++KQ+ LN+L+NA+ FTP G + + ++V V DTG+G++ Sbjct: 626 VADNL-HVDVDKRALKQVLLNLLANAVKFTPDHGTVTLK-ARPRGDKVRFEVTDTGIGIS 683 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++E+ KPF Q+ N +G+GLGL +A+++V+ + GK I S KGT++ P Sbjct: 684 ERDIERLAKPFVQVENQFTKTHQGSGLGLAIARSLVELHGGKLAIESEVKKGTVVSFSLP 743 Query: 810 LYDT 813 L T Sbjct: 744 LART 747 >gi|163792358|ref|ZP_02186335.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha proteobacterium BAL199] gi|159182063|gb|EDP66572.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha proteobacterium BAL199] Length = 528 Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 101/260 (38%), Positives = 154/260 (59%), Gaps = 1/260 (0%) Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 S +L + K +LS + A KS FLA +SHE+RTPL AIIGFSE++ Sbjct: 229 SDALALLARQNTRLKAASEELSRTRDAALTADRSKSMFLAAMSHELRTPLNAIIGFSEIM 288 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 Q +GP+G+ +Y +YAN I SG+ +L +++D+LD+S++E+GK+ L EP+ + E + Sbjct: 289 ARQLYGPIGHAKYRDYANDIRSSGDHLLALIDDVLDLSRVEAGKLVLRREPLDVVEQIES 348 Query: 671 AISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 LVQ A + I +R + AN IL D +QI LN+L+NA+ FT +GG + + Sbjct: 349 CCRLVQGRATDSGIDLRFAPAANPSATILGDRVRFRQILLNVLTNAVKFTDAGGSVQVDI 408 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + V++RV DTG+GM++ +LE+ +PF Q S EG GLGL L++A+V + Sbjct: 409 GDDTAGTVVIRVADTGIGMSDDDLERVFRPFEQAGVSGARAVEGVGLGLALSRALVREHD 468 Query: 790 GKFYIFSTPAKGTLIEIIFP 809 G I S P +GT + + FP Sbjct: 469 GTLNIASAPGRGTTVTLSFP 488 >gi|27378849|ref|NP_770378.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] gi|27351998|dbj|BAC49003.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] Length = 546 Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 104/249 (41%), Positives = 156/249 (62%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I E +Q K A+ AE + KS FLA++SHE+RTPL AI+GFSEV+K++ FG Sbjct: 254 IGELEQAKAISDEARHRAESANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHAV 313 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P Y EY+ I SG +L+++N++LD+S+IE+G+ L+ E VSL V++ L++L A+ Sbjct: 314 PVYKEYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAVSLVGIVADCHHLMKLRAS 373 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + I I F +PR+ AD R+++Q+ LN+LSN+I FTP GG+I + T++ L Sbjct: 374 SRGITIHEVFEQAMPRLWADERAIRQVVLNLLSNSIKFTPQGGEIWLKAGWTASGGQYLS 433 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 VRDTG G+ E+ + FGQ NS + +G GLGLP+AK ++D + G F + S Sbjct: 434 VRDTGSGIPEDEIPVVLASFGQGSNSIKSAEQGAGLGLPIAKNLIDLHGGTFTLKSKLRI 493 Query: 801 GTLIEIIFP 809 GT + + FP Sbjct: 494 GTEVIVTFP 502 >gi|222148514|ref|YP_002549471.1| two component sensor kinase [Agrobacterium vitis S4] gi|221735500|gb|ACM36463.1| two component sensor kinase [Agrobacterium vitis S4] Length = 511 Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 98/249 (39%), Positives = 156/249 (62%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E + K+ A++ AE+ + KS FLA +SHE+RTPL AI+GFSEV+ + GPL N Sbjct: 238 IAELEVAKSMSDEARRRAEEANMAKSRFLASMSHELRTPLNAILGFSEVMAQEVLGPLNN 297 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P Y EY+ I RSG +L+++N++LD+S+IE+GK +L E +SL E + + +VQL A Sbjct: 298 PLYREYSGDIHRSGQHLLNLINEILDLSRIEAGKYDLSEESISLLEVAEDCVGMVQLRAK 357 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K I I + N+P + AD ++++Q+ LN+LSNA+ FTP GG+I++ T + Sbjct: 358 AKDIKISQQYEINLPALWADEKALRQVVLNLLSNAVKFTPPGGEILVKVGWTVGGGQYVS 417 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 ++D G G+ E+ + FGQ + + +GTGLGLP+ +A++ + G+F + S + Sbjct: 418 IKDNGPGIAEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHGGEFKLKSKLRE 477 Query: 801 GTLIEIIFP 809 GT + I P Sbjct: 478 GTEVIAILP 486 >gi|329888197|ref|ZP_08266795.1| non-motile and phage-resistance protein [Brevundimonas diminuta ATCC 11568] gi|328846753|gb|EGF96315.1| non-motile and phage-resistance protein [Brevundimonas diminuta ATCC 11568] Length = 420 Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 97/243 (39%), Positives = 148/243 (60%), Gaps = 4/243 (1%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE + KS+FLA +SHE+RTPL AI GFSE++ + FGPLG+ RY YA I SG + Sbjct: 167 AEAANQAKSEFLANMSHELRTPLNAINGFSEIMAAEMFGPLGDRRYKGYAADIHGSGQHL 226 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ND+LD++KIE+GK+ LH+EP++LD +EA+ L++ A E ++ + ++ I Sbjct: 227 LSLINDILDMAKIEAGKLTLHYEPMALDVLCAEAVRLMRGKAQEAQLALTLDCPEDL-HI 285 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 AD R +KQ+ LN++SNA+ FTP GG + + V + V DTG+G+ +LE+ Sbjct: 286 EADQRGLKQVLLNLISNAVKFTPEGGAVSVKVAPRDAATVRVSVVDTGIGIAAKDLERLA 345 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 +PF Q+ +GTGLGL L K++++ + G I S P +GT + P T P Sbjct: 346 QPFEQVEGQHSKSTQGTGLGLALTKSLIELHGGAMTIESEPGRGTTVWFDLP---TRAPE 402 Query: 818 DCI 820 + Sbjct: 403 GAV 405 >gi|148254874|ref|YP_001239459.1| putative sensor histidine kinase membrane protein [Bradyrhizobium sp. BTAi1] gi|146407047|gb|ABQ35553.1| putative sensor histidine kinase, putative membrane protein [Bradyrhizobium sp. BTAi1] Length = 532 Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 102/249 (40%), Positives = 157/249 (63%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I E +Q K A+ AE + KS FLA++SHE+RTPL AI+GFSEV+K++ FG Sbjct: 239 IGELEQAKAISDEARYRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHAV 298 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P Y EY+ I SG +L+++N++LD+S+IE+G+ L+ E V+L V++ L++L A+ Sbjct: 299 PVYKEYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAVALVHVVADCHHLLKLRAS 358 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + + I F N+PR+ AD R+++Q+ LN+LSNAI FTP GG+I + T++ L Sbjct: 359 SRGLTIHEVFEQNMPRLWADERAIRQVVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLS 418 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+DTG G+ E+ + FGQ NS + +G GLGLP+AK +++ + G F + S Sbjct: 419 VKDTGSGIPENEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKNLIEMHGGTFTLKSKVRI 478 Query: 801 GTLIEIIFP 809 GT + + FP Sbjct: 479 GTEVIVTFP 487 >gi|239831458|ref|ZP_04679787.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG 3301] gi|239823725|gb|EEQ95293.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG 3301] Length = 783 Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 102/264 (38%), Positives = 160/264 (60%), Gaps = 13/264 (4%) Query: 557 TMHDIS-----------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 T+HD+S E + K K+ AE + KS+FLA +SHE+RTPL AIIG Sbjct: 506 TIHDLSIARKGERDRVRELSELARKYGQEKERAEAANRAKSEFLANMSHELRTPLNAIIG 565 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE+I+ FGPLG+ RY EY N I SGN +L+++ND+LD+SKIE+G +L E + L Sbjct: 566 FSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLC 625 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 ++E + ++ L A+EK I + T + + ++ AD R++KQ+ +N+LSNA+ FT GGQI Sbjct: 626 PLINETVRMISLQADEKNIAVNTRIEDAM-QLYADRRAIKQVLINLLSNAVKFTSYGGQI 684 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + T + + + ++DTGVG+ ++K +PF Q+ N G+GLGL + +++ Sbjct: 685 TVRARKTGS-ALFMTIQDTGVGIPKSAIKKIGQPFEQVENQFTKTHTGSGLGLAITRSLA 743 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + + G I ST GT++ + P Sbjct: 744 ELHGGWLRIRSTEGVGTVVSVCIP 767 >gi|316934884|ref|YP_004109866.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] gi|315602598|gb|ADU45133.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] Length = 769 Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 94/241 (39%), Positives = 155/241 (64%), Gaps = 2/241 (0%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 K K+ AE+ + KS FLA +SHE+RTPL AIIGFSE++ + FG LG+ +Y EY + Sbjct: 521 RKYGDEKRRAEEANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGTLGSEKYQEYCH 580 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I SG+ +L+++ND+LD+SKIE+G+M L EP+ L + + E++ +V A K + +R Sbjct: 581 DIMTSGHYLLEVINDILDMSKIEAGRMRLEMEPLDLSKTIGESLKVVAGRAEHKHLDLRA 640 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + IP I+AD R++KQI +N+LSNA+ FTP G++ + + + + ++L + DTG+G+ Sbjct: 641 EVGDQIP-IVADRRAIKQILINLLSNAVKFTPDAGRVTVR-SRIAGDSIVLMIADTGIGI 698 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 L + +PF Q+ + G+GLGL +AK++V+ + G + ST +GT++ + Sbjct: 699 PPQSLRRLGQPFEQVESQLTKSYHGSGLGLAIAKSLVNLHGGSMRLRSTLGEGTVVMVSL 758 Query: 809 P 809 P Sbjct: 759 P 759 >gi|15889187|ref|NP_354868.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] gi|15157006|gb|AAK87653.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] Length = 511 Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 96/242 (39%), Positives = 156/242 (64%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E + + A++ AE+ + KS FLA +SHE+RTPL AI+GFSEV+ ++ GPL N Sbjct: 238 IAELEVANSVSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSSEVLGPLNN 297 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P Y EY+ I RSG +LD++N++LD+S+IE+G+ +L+ E +S+ E + I ++QL A Sbjct: 298 PLYKEYSGDIHRSGQHLLDLINEILDLSRIEAGRYDLNEESISMLEIAEDCIGMIQLRAR 357 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K I I F ++P++ AD +S++Q+ LN+LSNA+ FTP GG+I++ T+ + Sbjct: 358 AKNIRISQQFEASLPQVWADEKSIRQVILNLLSNAVKFTPQGGEILVKAGWTAGGGQYVS 417 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 +RD G G+ E+ + FGQ + + +GTGLGLP+ +A++ + G+F + S + Sbjct: 418 IRDNGPGIPEDEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFILKSKLRE 477 Query: 801 GT 802 GT Sbjct: 478 GT 479 >gi|148254533|ref|YP_001239118.1| two-component sensor histidine kinase [Bradyrhizobium sp. BTAi1] gi|146406706|gb|ABQ35212.1| putative two-component sensor histidine kinase with a ATP-binding domain (C-term) [Bradyrhizobium sp. BTAi1] Length = 774 Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 95/240 (39%), Positives = 154/240 (64%), Gaps = 2/240 (0%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 K S K AE+ + KS FLA +SHE+RTPL AIIGFSE++ + FG LG+ +Y EY + Sbjct: 523 KYSQEKTRAEEANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGSLGSEKYQEYCHD 582 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG +L+++ND+LD+SKIE+G+M L EP+ L + ++E++ +V A +KR+++ Sbjct: 583 ILTSGQYLLEVINDILDMSKIEAGRMKLDMEPLDLAKTLAESLRVVSGRAQDKRLVLDAD 642 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 NIP I+AD R+ KQI +N+LSNA+ FTP GG++ + + +++V+L + DTG+G+ Sbjct: 643 IEGNIP-IVADRRATKQIMVNLLSNAVKFTPEGGRVTMR-SRVFDDKVVLIIADTGIGIP 700 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L + +PF Q+ + G+GLGL +A+++ + G + S GT++ + P Sbjct: 701 AQSLARLGRPFEQVESQMTKTYHGSGLGLAIARSLTQLHGGSMRLRSRIESGTVVRVTLP 760 >gi|299133494|ref|ZP_07026688.1| multi-sensor signal transduction histidine kinase [Afipia sp. 1NLS2] gi|298591330|gb|EFI51531.1| multi-sensor signal transduction histidine kinase [Afipia sp. 1NLS2] Length = 600 Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 107/257 (41%), Positives = 155/257 (60%), Gaps = 1/257 (0%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M D++E K ++ L A++ AE+ + KS FLA +SHE+RTPL AIIGFSE+I + Sbjct: 317 VMRDVTERKMQEQALEAARQEAEQAGASKSRFLATMSHELRTPLNAIIGFSEMIAREDEM 376 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L R EYA I+ SG +L +VN +LD+SK+ESGK L EP + EA+S +L+ Sbjct: 377 KLDAARRREYAGLINESGLHLLSVVNGILDMSKMESGKFELVSEPFAPREALSSCCNLMV 436 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 L A + I + T +++P++ D R+ KQI LN+LSNAI FT GG + +S E Sbjct: 437 LKARDNGIDLTTRMPSDLPQMTGDARAFKQILLNLLSNAIKFTGEGGSVTVS-AQVEGRE 495 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 ++LRV DTG+G+ +L + PF Q S Q R EGTGLGL + K++V + G+ + S Sbjct: 496 LLLRVADTGIGIGKDDLARLGNPFFQAGASYQGRREGTGLGLSIVKSLVSLHGGEMKVES 555 Query: 797 TPAKGTLIEIIFPLYDT 813 +GT I + P+ T Sbjct: 556 ELDRGTTISVRLPMIFT 572 >gi|91976523|ref|YP_569182.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB5] gi|91682979|gb|ABE39281.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5] Length = 530 Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 104/249 (41%), Positives = 155/249 (62%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I E +Q K A+ AE + KS FLA++SHE+RTPL AI+GFSEV+K++ FG Sbjct: 240 IGELEQAKAISDEARHRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHAV 299 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P Y +Y+ I SG +L+++N++LD+S+IE+G+ L+ E +SL VS+ L++L A+ Sbjct: 300 PVYKDYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAISLVHVVSDCHHLLKLRAS 359 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + I I F +PRI D R+V+Q+ LN+LSNAI FTP GG+I + T++ L Sbjct: 360 SRGITIHEVFEQGMPRIWGDERAVRQVVLNLLSNAIKFTPQGGEIWLKVGWTASGGQYLS 419 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+DTG G+ E+ + FGQ NS + +G GLGLP+AK++VD + G F + S Sbjct: 420 VKDTGSGIPEEEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLVDMHGGTFTLKSKLRI 479 Query: 801 GTLIEIIFP 809 T + + FP Sbjct: 480 STEVIVTFP 488 >gi|92117002|ref|YP_576731.1| periplasmic sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] gi|91799896|gb|ABE62271.1| periplasmic sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] Length = 775 Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 98/241 (40%), Positives = 152/241 (63%), Gaps = 2/241 (0%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 K + K AE + KS FLA +SHE+RTPL AIIGFSE++ N FG LG+ +Y EY + Sbjct: 523 QKYAKEKDRAEDANRAKSKFLANMSHELRTPLNAIIGFSEIMSNGMFGTLGSEKYSEYCH 582 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I SG +L+++ND+LD+SKIE+G+M L EP+ L ++E++ +V ++K++ Sbjct: 583 DILTSGQYLLEVINDVLDMSKIEAGRMKLDMEPLDLSRTLAESLRVVTGRTSDKKLTFDV 642 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 ++I I AD R+VKQI +N+LSNA+ FTP GG+++ + +N V L + DTG+G+ Sbjct: 643 RIDDDIA-ITADHRAVKQIIVNLLSNAVKFTPDGGRVMARSQVFAN-SVALTIADTGIGI 700 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + L K KPF Q+ + G+GLGL +AK++V+ + G + S P GT++ + Sbjct: 701 APHSLRKLGKPFEQVESQLTKTYAGSGLGLAIAKSLVNLHGGSMRLRSKPGTGTVVRVTL 760 Query: 809 P 809 P Sbjct: 761 P 761 >gi|325293290|ref|YP_004279154.1| two component sensor kinase [Agrobacterium sp. H13-3] gi|325061143|gb|ADY64834.1| two component sensor kinase [Agrobacterium sp. H13-3] Length = 511 Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 96/242 (39%), Positives = 156/242 (64%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E + + A++ AE+ + KS FLA +SHE+RTPL AI+GFSEV+ + GPL N Sbjct: 238 IAELEVANSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVLGPLNN 297 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P Y EY+ I RSG +LD++N++LD+S+IE+G+ +L+ E VS+ E + I ++QL A Sbjct: 298 PLYKEYSGDIHRSGQHLLDLINEILDLSRIEAGRYDLNEEAVSMLEIAEDCIGMIQLRAR 357 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K I I F +++P++ AD +S++Q+ LN+LSNA+ FTP GG+I++ T+ + Sbjct: 358 AKTIRISQQFESSLPQVWADEKSIRQVILNLLSNAVKFTPQGGEILVKAGWTAGGGQYVS 417 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 ++D G G+ E+ + FGQ + + +GTGLGLP+ +A++ + G+F + S + Sbjct: 418 IKDNGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFILKSKLRE 477 Query: 801 GT 802 GT Sbjct: 478 GT 479 >gi|49475185|ref|YP_033226.1| hypothetical protein BH03850 [Bartonella henselae str. Houston-1] gi|49237990|emb|CAF27195.1| hypothetical protein BH03850 [Bartonella henselae str. Houston-1] Length = 437 Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 116/379 (30%), Positives = 200/379 (52%), Gaps = 42/379 (11%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 + S+L+ +DG+ +N +G I + +R+ L GY + ++L +P + + S++ Y Sbjct: 78 VLSLLDTATDGVLWLNEQGFIQAVSRSALALTGYEINELLAQPLSSLFTLQSRSLVEKYF 137 Query: 514 TEILSLDLRQTLEKITLGST-----KEEKLLSLRIIIKKLPFSSCYSLTMHDIS------ 562 I +++ + G T K K +++ + + L Y++ + +++ Sbjct: 138 ELI---RMKRKNQAFIRGDTADLVTKNYKSITVSMTMVFLARQDSYAVILRNMTSVVLPL 194 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + K E+NK+ V HE+RTPL A+IGF+E++++ RFG + N R Sbjct: 195 DKKAEENKM------------------VGVVHEMRTPLNALIGFAEIMRDGRFGAIDNER 236 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISK---IESGKMN---LHFEPVSLDEAVSEAISLVQ 676 Y Y I SG +L +VN LL+ SK + S N + E + + +++ ++ Sbjct: 237 YRGYLRDIISSGRHILSLVNQLLECSKANYLSSNHQNNRSVIAETFDVTSCLRASMAFLE 296 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 AN I++R +P I + +QI N+LSNAI FTPSGGQII+ +++ E Sbjct: 297 TQANYNGIIMRIVAPVYVPFICISQQIFRQIIWNLLSNAIRFTPSGGQIIVHVSYSKKER 356 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE----GTGLGLPLAKAMVDANMGKF 792 V + V D GVGM + E+ +A++P+GQ+ G+ GTGLGLP+ KAMV+ + G+F Sbjct: 357 VKISVSDNGVGMNDEEILRALQPYGQVERKDGRSGDSVFVGTGLGLPMCKAMVEESGGQF 416 Query: 793 YIFSTPAKGTLIEIIFPLY 811 +FS P GT +E+ FP++ Sbjct: 417 LLFSKPNHGTTVEMFFPIF 435 >gi|20092217|ref|NP_618292.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19917449|gb|AAM06772.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 761 Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 127/360 (35%), Positives = 198/360 (55%), Gaps = 12/360 (3%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +++ T DGI I+N EG +++ N AV K+F +E I +L + V Sbjct: 395 ALVNNTLDGIIILNFEGEVIAANAAVGKMFNVELEKITGTNIAKYLAPESVPVAIRDQIN 454 Query: 516 ILS-----LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 +L+ L + + + ++G + L +II + P + + + DI+ K+ + Sbjct: 455 VLNNQGGYLSVYKAIS--SMGEHFWIEGLGTKIIYQNQPANI---VVIRDITVRKKAEEA 509 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L +AK AE + KS+FL +SHE++TPL +IIGFS+++K + GPL N + Y +I Sbjct: 510 LINAKTAAEVANRTKSEFLTNMSHELKTPLNSIIGFSDLLKEEIAGPL-NEKQSRYVQFI 568 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG +L+I+ND+LD+SK ESG+ +L+ E S+DE++++ IS+V A EK I++ Sbjct: 569 SSSGKNLLEIINDILDLSKAESGEEDLNVEKFSVDESINKVISVVLPQAQEKNIILNYQS 628 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 N I AD +QI N+LSNAI FTP+GG I + T V + V+DTG+G+ Sbjct: 629 ENRTLWITADEGKFRQIMENLLSNAIKFTPAGGSIDV-TLKQEGLLVTIEVKDTGIGIPE 687 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 EK KPF QI +S EGTGLGL L K V+ + G Y+ S +G+ P+ Sbjct: 688 DSFEKIFKPFIQIDSSLSRNFEGTGLGLTLVKKYVEMHGGNIYVESKIGEGSSFRFELPV 747 >gi|153009989|ref|YP_001371204.1| multi-sensor signal transduction histidine kinase [Ochrobactrum anthropi ATCC 49188] gi|151561877|gb|ABS15375.1| multi-sensor signal transduction histidine kinase [Ochrobactrum anthropi ATCC 49188] Length = 784 Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 102/264 (38%), Positives = 159/264 (60%), Gaps = 13/264 (4%) Query: 557 TMHDIS-----------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 T+HD+S E + K K+ AE + KS+FLA +SHE+RTPL AIIG Sbjct: 506 TIHDLSIARKGERDRVRELSELARKYGQEKERAEAANRAKSEFLANMSHELRTPLNAIIG 565 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE+I+ FGPLG+ RY EY N I SGN +L+++ND+LD+SKIE+G +L E + L Sbjct: 566 FSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDREQIDLC 625 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 ++E + ++ L A+EK I + T + ++ AD R++KQ+ +N+LSNA+ FT GGQI Sbjct: 626 PLINETVRMISLQADEKNIAVNTRIEEAM-QLYADRRAIKQVLINLLSNAVKFTSYGGQI 684 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + T + + + ++DTGVG+ ++K +PF Q+ N G+GLGL + +++ Sbjct: 685 TVRARKTGS-ALFMTIQDTGVGIPKSAIKKIGQPFEQVENQFTKTHTGSGLGLAITRSLA 743 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + + G I ST GT++ + P Sbjct: 744 ELHGGWLRIRSTEGVGTVVSVCIP 767 >gi|188580116|ref|YP_001923561.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium populi BJ001] gi|179343614|gb|ACB79026.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium populi BJ001] Length = 513 Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 101/248 (40%), Positives = 154/248 (62%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E +Q K A++ AE+ + KS FLA +SHE+RTPL AI+GFSEV+KN+ FG P Sbjct: 235 AELEQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMKNEVFGAHAAP 294 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 Y EYA I SG +L+++N++LD+S+IE+G+ +L E V L V E ++ L A Sbjct: 295 AYREYATDIHDSGMHLLNLINEILDLSRIEAGRYDLSEEAVQLAHTVEECRHMMTLRARS 354 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 K + +++PR+ AD R+++QI LN+LSNA+ FTP GG+I I TS+ + V Sbjct: 355 KGQTFASLIDDSLPRLWADERALRQIVLNLLSNAVKFTPPGGEITIKVGWTSSGGQYVSV 414 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +D+G G+ EL M FG+ + + +G+GLGLP+ K ++D + G F + S P +G Sbjct: 415 KDSGPGIPEDELGTVMSSFGRGSLAIKTAEQGSGLGLPIVKGLIDLHGGGFQLKSKPREG 474 Query: 802 TLIEIIFP 809 T + + FP Sbjct: 475 TEVIVTFP 482 >gi|15965635|ref|NP_385988.1| putative sensor histidine kinase transmembrane protein [Sinorhizobium meliloti 1021] gi|307314039|ref|ZP_07593652.1| integral membrane sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] gi|307321216|ref|ZP_07600618.1| integral membrane sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] gi|15074816|emb|CAC46461.1| Putative sensor histidine kinase transmembrane protein [Sinorhizobium meliloti 1021] gi|306893118|gb|EFN23902.1| integral membrane sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] gi|306899161|gb|EFN29800.1| integral membrane sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] Length = 511 Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 101/249 (40%), Positives = 154/249 (61%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E + K+ A++ AE+ + KS FLA +SHE+RTPL AI+GFSEV+ + GPL N Sbjct: 238 IAELEVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSTEVLGPLSN 297 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P Y EY I RSG +L+++N++LD+S+IE+GK L + V+L E V + I +VQL A Sbjct: 298 PTYKEYTLDIHRSGEHLLNLINEILDLSRIEAGKYELSEDAVNLAEIVEDCIGMVQLRAR 357 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K I I F +P + AD ++++Q+ LN+LSNA+ FTPSGG++ + T+ L Sbjct: 358 GKNITIGHQFEQAMPSVWADEKAMRQVTLNLLSNAVKFTPSGGEVSVKVGWTAGGGQYLS 417 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 +RD G G+ E+ + FGQ + + +GTGLGLP+ +A++ + G+F + S + Sbjct: 418 IRDNGPGIPEEEIPIVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHGGQFILRSKLRE 477 Query: 801 GTLIEIIFP 809 GT I P Sbjct: 478 GTEAIAILP 486 >gi|114569501|ref|YP_756181.1| multi-sensor signal transduction histidine kinase [Maricaulis maris MCS10] gi|114339963|gb|ABI65243.1| multi-sensor signal transduction histidine kinase [Maricaulis maris MCS10] Length = 911 Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 98/244 (40%), Positives = 154/244 (63%), Gaps = 3/244 (1%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE+ + KS+FLA +SHE+RTPL AI GFSE++ + FGPLG+ RY+ Y I SG + Sbjct: 613 AEEANRSKSEFLANMSHELRTPLNAINGFSEIMMQEMFGPLGDDRYVGYMKDILSSGRHL 672 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L+++ND+LD+SKIE+GKM L EP E V ++I +V+ A EK++ +R +++P I Sbjct: 673 LELINDILDMSKIEAGKMQLQPEPTDASELVEQSIRIVRGRAEEKQLKLRADV-SDLPEI 731 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D R+ KQ+ +N++SNA+ FTP GG++ + S V +V DTG+G+ +L + Sbjct: 732 EVDPRAFKQVMINLVSNAVKFTPEGGRVTVR-GFLSGLGVAFQVSDTGIGIAKDDLPRLG 790 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL-YDTSHP 816 +PF QI + +G+GLGL L+K++++ + G I S +GT + ++ P+ D P Sbjct: 791 RPFEQIESQHSKSFQGSGLGLALSKSLIELHGGTLSIDSVLGEGTTVSVVLPISQDQPIP 850 Query: 817 HDCI 820 D I Sbjct: 851 RDAI 854 >gi|150396809|ref|YP_001327276.1| integral membrane sensor signal transduction histidine kinase [Sinorhizobium medicae WSM419] gi|150028324|gb|ABR60441.1| integral membrane sensor signal transduction histidine kinase [Sinorhizobium medicae WSM419] Length = 511 Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 101/249 (40%), Positives = 153/249 (61%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E + K+ A++ AE+ + KS FLA +SHE+RTPL AI+GFSEV+ + GPL N Sbjct: 238 IAELEVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSTEVLGPLSN 297 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P Y EY I RSG +L+++N++LD+S+IE+GK L + V+L E V + I +VQL A Sbjct: 298 PTYKEYTLDIHRSGEHLLNLINEILDLSRIEAGKYELSEDAVNLAEIVEDCIGMVQLRAR 357 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K I I F +P + AD ++++Q+ LN+LSNA+ FTPSGG++ + T+ L Sbjct: 358 SKNITIGQQFEQAMPSVWADEKAMRQVTLNLLSNAVKFTPSGGEVSVKVGWTAGGGQYLS 417 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 +RD G G+ E+ + FGQ + + +GTGLGLP+ +A++ + G+F + S Sbjct: 418 IRDNGPGIPEEEIPIVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHNGQFILRSKLRV 477 Query: 801 GTLIEIIFP 809 GT I P Sbjct: 478 GTEAIAILP 486 >gi|296447262|ref|ZP_06889191.1| integral membrane sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] gi|296255224|gb|EFH02322.1| integral membrane sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] Length = 514 Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 105/267 (39%), Positives = 158/267 (59%), Gaps = 10/267 (3%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I E +Q K A++ AE+ + KS FLA +SHE+RTPL AI+GFSEV+KN+ FG Sbjct: 237 IGELEQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVLKNELFGVHAV 296 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 Y +Y+N I SG +L ++N++LD+S++E+G+ L E VSL V + L+ + A Sbjct: 297 AAYKDYSNDIHSSGQHLLMLINEILDLSRVEAGRYELKEESVSLATMVEDCRHLLTIRAQ 356 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 ++ I + ++PR+ AD R+V+QI LN+L+NAI FTP GGQ+ + TS + Sbjct: 357 KRGIEMIEMTEPDLPRLWADERAVRQIVLNLLTNAIKFTPQGGQVTLKVGWTSAGGQYVA 416 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 +RDTG G+ E+ M FG+ +Q+ EGTGLGLP+ K ++D + G F + S + Sbjct: 417 IRDTGPGIPEEEIAVVMSSFGRGTLAQKNAEEGTGLGLPIVKGLIDLHGGLFKLASKVRE 476 Query: 801 GTLIEIIFP----------LYDTSHPH 817 GT ++FP D +HPH Sbjct: 477 GTEAIVVFPPERVMNALPKFDDEAHPH 503 >gi|154251392|ref|YP_001412216.1| multi-sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154155342|gb|ABS62559.1| multi-sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 617 Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 102/255 (40%), Positives = 153/255 (60%), Gaps = 1/255 (0%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + D++ +E L A+ A S KS+FLA +SHE+RTPL AIIGFSE ++ + F Sbjct: 350 IGIQDVTVRHKEAEALREARDQATAASRSKSEFLANMSHELRTPLNAIIGFSEALERELF 409 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GP+GNPRY EYA I SG +L ++ND+LD+SKIE+G LH + LD V+ A +V Sbjct: 410 GPVGNPRYREYAEDIHDSGVHLLSLINDILDLSKIEAGHFKLHEDETDLDHIVAAATRIV 469 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A + I I +L D R++KQ+ +N++SNA+ F+P G I++ T+ + Sbjct: 470 RHRAQQANIAIECRLPQPPLAVLVDERALKQVLINLVSNAVKFSPDGSLILVEANVTT-Q 528 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + + V D GVG+ ++ +A+ PF Q+ S EGTGLGLPLAK + + + GK +I Sbjct: 529 GLRISVADKGVGIAPEDIPRALTPFTQLDGSLSRAHEGTGLGLPLAKHLTELHDGKLFIE 588 Query: 796 STPAKGTLIEIIFPL 810 S GT + + PL Sbjct: 589 SAVDVGTTVYVDLPL 603 >gi|13470769|ref|NP_102338.1| histidine kinase sensor protein [Mesorhizobium loti MAFF303099] gi|14021512|dbj|BAB48124.1| histidine kinase sensor protein [Mesorhizobium loti MAFF303099] Length = 506 Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 100/250 (40%), Positives = 155/250 (62%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E + K+ A++ AE + KS FLA +SHE+RTPL AI+GFSEV+ N+ GP+ N Sbjct: 237 IAELETAKSMSDEARRRAEDANLAKSRFLASMSHELRTPLNAILGFSEVMANEVLGPMSN 296 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P Y +YA+ + SG +LD++N++LD+S+IE+G+ L+ EPV L V + +++L A Sbjct: 297 PTYRDYAHDVHDSGQHLLDLINEILDLSRIEAGRYQLNEEPVMLLNIVEDCCHMMELKAR 356 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K I + F +PR+ AD R+V+QI LN+LSNAI FT +GG+I + T+ + Sbjct: 357 NKDIRVVQDFEQTLPRLFADERAVRQITLNLLSNAIKFTATGGEIRVRVGWTAGGGQYIS 416 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+D G G+ E+ + FGQ + + +GTGLGLP+ + ++ + G+F + S + Sbjct: 417 VKDNGPGIPEDEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQGLLAMHGGEFELHSKLRE 476 Query: 801 GTLIEIIFPL 810 GT IFPL Sbjct: 477 GTEAIAIFPL 486 >gi|319783623|ref|YP_004143099.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169511|gb|ADV13049.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 506 Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 99/250 (39%), Positives = 156/250 (62%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E + K+ A++ AE + KS FLA +SHE+RTPL AI+GFSEV+ N+ GP+ N Sbjct: 237 IAELETAKSMSDEARRRAEDANLAKSRFLASMSHELRTPLNAILGFSEVMSNEVLGPMSN 296 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P Y +YA+ + SG +LD++N++LD+S+IE+G+ L+ EPV L V + +++L A Sbjct: 297 PTYRDYAHDVHESGQHLLDLINEILDLSRIEAGRYQLNEEPVMLLGIVEDCCHMMELRAR 356 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K I + F + +PR+ AD R+V+QI LN+LSNAI FT +GG+I + T+ + Sbjct: 357 NKDIRVVQDFEHELPRLFADERAVRQITLNLLSNAIKFTATGGEIRVRVGWTAGGGQYIS 416 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 ++D G G+ E+ + FGQ + + +GTGLGLP+ + ++ + G+F + S + Sbjct: 417 IKDNGPGIPEDEIPIVLSAFGQGSIAIKSAEQGTGLGLPIVQGLLAMHGGEFELHSKLRE 476 Query: 801 GTLIEIIFPL 810 GT IFPL Sbjct: 477 GTEAIAIFPL 486 >gi|115523991|ref|YP_780902.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] gi|115517938|gb|ABJ05922.1| signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] Length = 545 Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 103/249 (41%), Positives = 155/249 (62%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I E +Q K A+ AE + KS FLA++SHE+RTPL AI+GFSEV+K++ FG Sbjct: 251 IGELEQAKAISDEARHRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHAV 310 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 Y +Y+ I SG +L+++N++LD+S+IE+G+ L+ E VSL V++ L++L A+ Sbjct: 311 AVYKDYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAVSLVHVVADCHHLLKLRAS 370 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + I I F +PRI AD R+ +QI LN+LSN+I FTP GG+I + T++ L Sbjct: 371 NRGITIHEVFEQGMPRIWADERAARQIVLNLLSNSIKFTPQGGEIWLKVGWTASGGQYLS 430 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+DTG G+ E+ + FGQ NS + +G GLGLP+AK+++D + G F + S Sbjct: 431 VKDTGSGIAEDEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLKSKLRI 490 Query: 801 GTLIEIIFP 809 GT + + FP Sbjct: 491 GTEVIVTFP 499 >gi|83945614|ref|ZP_00957960.1| non-motile and phage-resistance protein [Oceanicaulis alexandrii HTCC2633] gi|83850980|gb|EAP88839.1| non-motile and phage-resistance protein [Oceanicaulis alexandrii HTCC2633] Length = 849 Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 94/232 (40%), Positives = 152/232 (65%), Gaps = 2/232 (0%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE+ + KS+FLA +SHE+RTPL AI GFSE++ + FGPLG+ RY +Y I SG + Sbjct: 591 AEEANRSKSEFLANMSHELRTPLNAINGFSEIMAGEMFGPLGHERYQDYVRDILSSGQHL 650 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ND+LD+SKIE+GKM L EP+ E + + + +++ A EK I + T + +P I Sbjct: 651 LSLINDILDMSKIEAGKMQLQPEPLMPAEVIEQCVRIMRARAEEKSIEL-TVEGSELPEI 709 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 AD R++KQ+ LN++SNA+ FTP GG++ + ++ V+L+V DTG+G++ +L++ Sbjct: 710 TADPRALKQVILNLMSNAVKFTPEGGKVKLRGFQAAD-GVVLQVSDTGIGISEDDLQRVG 768 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +PF QI + + +G+GLGL L+K++++ + G I S +GT + P Sbjct: 769 RPFEQIESQHSKKHQGSGLGLALSKSLIEMHGGALRIDSRLGEGTTVSFTLP 820 >gi|255004059|ref|ZP_05278860.1| histidine kinase sensor protein (barA) [Anaplasma marginale str. Virginia] Length = 442 Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 96/240 (40%), Positives = 150/240 (62%), Gaps = 1/240 (0%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L K+ AE+ES KS FLA VSHE+RTPL +IIGFSE+I+++ GP+G+ Y EY N Sbjct: 192 ELQEQKETAERESVSKSQFLANVSHELRTPLNSIIGFSEIIQSESLGPIGSEEYKEYIND 251 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I +SG +L ++ND+LD SK E+ K+ + F L + V + ++V A + ++ ++ Sbjct: 252 IHQSGVHLLSLINDILDFSKAEANKLTVEFVKFDLGKIVDSSFTMVLPRAKDAKVELKKE 311 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 +LAD + +KQ+ +N+LSN++ FTP GG + + E++I+ + DTG+G+ Sbjct: 312 MPEEPIVMLADPKRMKQVIINVLSNSVKFTPEGGLVKL-CAEIRGEQLIVEISDTGIGIA 370 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L K M FGQ ++ + EGTGLGLPL+K +V+ G F I S P GT++ + FP Sbjct: 371 QQDLYKVMSVFGQADSTHSRKYEGTGLGLPLSKKLVELMQGTFSIKSEPNLGTIVTLTFP 430 >gi|163850345|ref|YP_001638388.1| ATPase domain-containing protein [Methylobacterium extorquens PA1] gi|218528903|ref|YP_002419719.1| histidine kinase [Methylobacterium chloromethanicum CM4] gi|240137418|ref|YP_002961889.1| putative integral membrane sensor signal transduction histidine kinase [Methylobacterium extorquens AM1] gi|254559597|ref|YP_003066692.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium extorquens DM4] gi|163661950|gb|ABY29317.1| ATP-binding region ATPase domain protein [Methylobacterium extorquens PA1] gi|218521206|gb|ACK81791.1| histidine kinase [Methylobacterium chloromethanicum CM4] gi|240007386|gb|ACS38612.1| putative integral membrane sensor signal transduction histidine kinase [Methylobacterium extorquens AM1] gi|254266875|emb|CAX22674.1| putative integral membrane sensor signal transduction histidine kinase [Methylobacterium extorquens DM4] Length = 513 Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 102/248 (41%), Positives = 154/248 (62%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E +Q K A++ AE+ + KS FLA +SHE+RTPL AI+GFSEV+KN+ FG P Sbjct: 235 AELEQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMKNEVFGAHVAP 294 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 Y EYA I SG +L+++N++LD+S+IE+G+ +L E V L V E ++ L A Sbjct: 295 AYREYATDIHDSGMHLLNLINEILDLSRIEAGRYDLTEEAVQLAHTVEECRHMMTLRARS 354 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 K + +++PR+ AD R+++QI LN+LSNA+ FTP GG+I I TS+ L V Sbjct: 355 KGQTFASLIDDSLPRLWADERALRQIVLNLLSNAVKFTPPGGEITIKVGWTSSGGQYLSV 414 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +D+G G+ EL M FG+ + + +G+GLGLP+ K ++D + G F + S P +G Sbjct: 415 KDSGPGIPEDELGTVMSSFGRGSLAIKTAEQGSGLGLPIVKGLIDLHGGGFQLKSKPREG 474 Query: 802 TLIEIIFP 809 T + + FP Sbjct: 475 TEVIVTFP 482 >gi|325292361|ref|YP_004278225.1| two component sensor kinase [Agrobacterium sp. H13-3] gi|325060214|gb|ADY63905.1| two component sensor kinase [Agrobacterium sp. H13-3] Length = 775 Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 103/274 (37%), Positives = 168/274 (61%), Gaps = 18/274 (6%) Query: 557 TMHDIS----EWKQEKNKLSHAKK--IAEKESSH-----KSDFLARVSHEIRTPLTAIIG 605 T+ D+S + +++K +LS A +AEKE + KS+FLA +SHE+RTPL AI+G Sbjct: 504 TIGDLSASQHKLERQKTELSDANANYLAEKERAQAANLAKSEFLANMSHELRTPLNAILG 563 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FS++++N+ FGP+G+P+Y EYA I SG +L+++ND+LD+SKIE+G M ++ E + L Sbjct: 564 FSDILQNEMFGPVGSPKYSEYARDIHDSGKHLLNVINDILDMSKIEAGHMRINRETIDLA 623 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + E + L + A +K I ++ + + D R++KQI LN+LSNA+ FT +GG++ Sbjct: 624 PLIEETLRLTAIQAEQKNITVQQKVCAGLT-MQGDRRAMKQIMLNLLSNAVKFTGNGGRV 682 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + TH +IL + DTG+G+ L+K +PF Q+ + G+GLGL +++++V Sbjct: 683 ALR-THVHQAAMILTIADTGIGIPAEALDKIGQPFEQVQSQYAKSQGGSGLGLAISRSLV 741 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 + G I S +GT++ II P H C Sbjct: 742 RLHGGTMKIRSCEGRGTVVTIIIP-----HAAGC 770 >gi|146341638|ref|YP_001206686.1| putative sensor histidine kinase membrane protein [Bradyrhizobium sp. ORS278] gi|146194444|emb|CAL78469.1| putative sensor histidine kinase, putative membrane protein [Bradyrhizobium sp. ORS278] Length = 532 Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 101/249 (40%), Positives = 156/249 (62%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I E +Q K A+ AE + KS FLA++SHE+RTPL AI+GFSEV+K++ FG Sbjct: 239 IGELEQAKAISDEARYRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHAV 298 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P Y EY+ I SG +L+++N++LD+S+IE+G+ L+ E V+L +++ L++L A+ Sbjct: 299 PVYKEYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAVALVHVIADCHHLLKLRAS 358 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + I I F +PR+ AD R+++Q+ LN+LSNAI FTP GG+I + T++ L Sbjct: 359 SRGITIHEVFEQKMPRLWADERAIRQVVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLS 418 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+DTG G+ E+ + FGQ NS + +G GLGLP+AK +++ + G F + S Sbjct: 419 VKDTGSGIPENEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKNLIEMHGGTFTLKSKVRI 478 Query: 801 GTLIEIIFP 809 GT + + FP Sbjct: 479 GTEVIVTFP 487 >gi|56416592|ref|YP_153666.1| histidine kinase sensor protein [Anaplasma marginale str. St. Maries] gi|255002934|ref|ZP_05277898.1| histidine kinase sensor protein (barA) [Anaplasma marginale str. Puerto Rico] gi|56387824|gb|AAV86411.1| histidine kinase sensor protein [Anaplasma marginale str. St. Maries] Length = 468 Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 96/240 (40%), Positives = 150/240 (62%), Gaps = 1/240 (0%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L K+ AE+ES KS FLA VSHE+RTPL +IIGFSE+I+++ GP+G+ Y EY N Sbjct: 218 ELQEQKETAERESVSKSQFLANVSHELRTPLNSIIGFSEIIQSESLGPIGSEEYKEYIND 277 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I +SG +L ++ND+LD SK E+ K+ + F L + V + ++V A + ++ ++ Sbjct: 278 IHQSGVHLLSLINDILDFSKAEANKLTVEFVKFDLGKIVDSSFTMVLPRAKDAKVELKKE 337 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 +LAD + +KQ+ +N+LSN++ FTP GG + + E++I+ + DTG+G+ Sbjct: 338 MPEEPIVMLADPKRMKQVIINVLSNSVKFTPEGGLVKL-CAEIRGEQLIVEISDTGIGIA 396 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L K M FGQ ++ + EGTGLGLPL+K +V+ G F I S P GT++ + FP Sbjct: 397 QQDLYKVMSVFGQADSTHSRKYEGTGLGLPLSKKLVELMQGTFSIKSEPNLGTIVTLTFP 456 >gi|90423567|ref|YP_531937.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] gi|90105581|gb|ABD87618.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] Length = 533 Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 103/249 (41%), Positives = 154/249 (61%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I E +Q K A+ AE + KS FLA++SHE+RTPL AI+GFSEV+K++ FG Sbjct: 240 IGELEQAKAISDEARHRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHAV 299 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 Y +Y+ I SG +L+++N++LD+S+IE+G+ L+ E VSL V++ L++L A+ Sbjct: 300 AVYKDYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAVSLVHVVADCHHLLKLRAS 359 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + I I F +PRI D R+ +QI LN+LSNAI FTP GG+I + T++ L Sbjct: 360 SRGITIHEVFEQGMPRIWGDERAARQIVLNLLSNAIKFTPQGGEIWLKVGWTASGGQYLS 419 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+DTG G+ E+ + FGQ NS + +G GLGLP+AK+++D + G F + S Sbjct: 420 VKDTGSGIAEDEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLKSKLRI 479 Query: 801 GTLIEIIFP 809 GT + + FP Sbjct: 480 GTEVIVTFP 488 >gi|256159347|ref|ZP_05457133.1| PAS domain-containing protein [Brucella ceti M490/95/1] Length = 376 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 103/264 (39%), Positives = 158/264 (59%), Gaps = 13/264 (4%) Query: 557 TMHDIS-----------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 T+HD+S E + K S K+ AE + KS+FLA +SHE+RTPL AIIG Sbjct: 98 TVHDLSIARKGERDRVRELSELARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIG 157 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE+I+ FGPLG+ RY EY N I SGN +L+++ND+LD+SKIE+G +L E + L Sbjct: 158 FSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLC 217 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 ++E + ++ L A EK I + T + + + AD R++KQ+ +N+LSNA+ FT GG+I Sbjct: 218 PLINETVRIISLQAEEKNIAVETRIEDAME-LYADRRAIKQVLINLLSNAVKFTSYGGRI 276 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + T + + ++DTGVG+ L K +PF Q+ N G+GLGL +++++ Sbjct: 277 TVRARKTG-AALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLA 335 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + + G I ST GT++ + P Sbjct: 336 ELHGGWLRIRSTERVGTVVSVCIP 359 >gi|163759717|ref|ZP_02166802.1| probable two-component sensor histidine kinase protein [Hoeflea phototrophica DFL-43] gi|162283314|gb|EDQ33600.1| probable two-component sensor histidine kinase protein [Hoeflea phototrophica DFL-43] Length = 510 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 96/249 (38%), Positives = 156/249 (62%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E + K+ A++ AE+ + KS FLA +SHE+RTPL AI+GFSEV+ + GP+GN Sbjct: 237 IAELEVAKSVSDEARRRAEESNLAKSRFLASMSHELRTPLNAILGFSEVMSGEVLGPVGN 296 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 Y EY I RSG +L+++N++LD+S+IE+G+ +L+ ++L + + I L+QL A Sbjct: 297 ESYKEYVGDIHRSGQHLLNLINEILDLSRIEAGRYDLNESALALSDIAQDCIGLIQLKAR 356 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K I I +F ++P + AD +S++Q+ LN+LSNA+ FTPSGG+I + T+ + Sbjct: 357 SKSITINEAFEEDLPMVWADEKSIRQVVLNLLSNAVKFTPSGGEIRVKLGWTAGGGQYIA 416 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 ++D G G+ E+ + FGQ + + +GTGLGLP+ +A++ + G+F + S + Sbjct: 417 IKDNGPGIAEEEIPVVLSAFGQGSVAIKSAEQGTGLGLPIVQAILAKHGGEFVLKSKLRE 476 Query: 801 GTLIEIIFP 809 GT I P Sbjct: 477 GTEGIAILP 485 >gi|222474959|ref|YP_002563374.1| histidine kinase sensor protein (barA) [Anaplasma marginale str. Florida] gi|222419095|gb|ACM49118.1| histidine kinase sensor protein (barA) [Anaplasma marginale str. Florida] Length = 474 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 96/240 (40%), Positives = 150/240 (62%), Gaps = 1/240 (0%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L K+ AE+ES KS FLA VSHE+RTPL +IIGFSE+I+++ GP+G+ Y EY N Sbjct: 224 ELQEQKETAERESVSKSQFLANVSHELRTPLNSIIGFSEIIQSESLGPIGSEEYKEYIND 283 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I +SG +L ++ND+LD SK E+ K+ + F L + V + ++V A + ++ ++ Sbjct: 284 IHQSGVHLLSLINDILDFSKAEANKLTVEFVKFDLGKIVDSSFTMVLPRAKDAKVELKKE 343 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 +LAD + +KQ+ +N+LSN++ FTP GG + + E++I+ + DTG+G+ Sbjct: 344 MPEEPIVMLADPKRMKQVIINVLSNSVKFTPEGGLVKL-CAEIRGEQLIVEISDTGIGIA 402 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L K M FGQ ++ + EGTGLGLPL+K +V+ G F I S P GT++ + FP Sbjct: 403 QQDLYKVMSVFGQADSTHSRKYEGTGLGLPLSKKLVELMQGTFSIKSEPNLGTIVTLTFP 462 >gi|91976495|ref|YP_569154.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5] gi|91682951|gb|ABE39253.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5] Length = 771 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 104/291 (35%), Positives = 174/291 (59%), Gaps = 18/291 (6%) Query: 528 ITLGSTKEEKL----LSLRIIIKKLPFSSC----YSLTMHDIS-EWKQEKNKLSHAKKIA 578 IT E+KL L LR + L S ++ + D++ ++ +EKN+ A Sbjct: 480 ITRIKAHEQKLVDNDLRLRATVADLKISQVKLERQAIELADLARKYSEEKNR-------A 532 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ + KS FLA +SHE+RTPL AIIGFSE++ + FG LG+ +Y EY + I SG+ +L Sbjct: 533 EEANQAKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGTLGSEKYQEYCHDIMTSGHYLL 592 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++ND+LD+SKIE+G+M L E + L + E++ +V A+ K + +R + IP I+ Sbjct: 593 EVINDILDMSKIEAGRMRLEMEELDLARTLGESLKVVAGRADNKHLELRAEIEDGIP-IV 651 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 AD R++KQI +N+LSNA+ FTP GG++ + + T + +++ + D+G+G+ L + + Sbjct: 652 ADRRAIKQILINLLSNAVKFTPDGGRVTVR-SRTLEDSIVMMIADSGIGIAPQSLRRLGQ 710 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 PF Q+ + G+GLGL +AK++ + G + ST GT++ + P Sbjct: 711 PFEQVESQLTKTYHGSGLGLAIAKSLTRLHGGSMRLRSTLGAGTVVMVTLP 761 >gi|265997787|ref|ZP_06110344.1| multi-sensor signal transduction histidine kinase [Brucella ceti M490/95/1] gi|262552255|gb|EEZ08245.1| multi-sensor signal transduction histidine kinase [Brucella ceti M490/95/1] Length = 367 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 103/264 (39%), Positives = 158/264 (59%), Gaps = 13/264 (4%) Query: 557 TMHDIS-----------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 T+HD+S E + K S K+ AE + KS+FLA +SHE+RTPL AIIG Sbjct: 89 TVHDLSIARKGERDRVRELSELARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIG 148 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE+I+ FGPLG+ RY EY N I SGN +L+++ND+LD+SKIE+G +L E + L Sbjct: 149 FSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLC 208 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 ++E + ++ L A EK I + T + + + AD R++KQ+ +N+LSNA+ FT GG+I Sbjct: 209 PLINETVRIISLQAEEKNIAVETRIEDAME-LYADRRAIKQVLINLLSNAVKFTSYGGRI 267 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + T + + ++DTGVG+ L K +PF Q+ N G+GLGL +++++ Sbjct: 268 TVRARKTG-AALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLA 326 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + + G I ST GT++ + P Sbjct: 327 ELHGGWLRIRSTERVGTVVSVCIP 350 >gi|222086249|ref|YP_002544781.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] gi|221723697|gb|ACM26853.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] Length = 509 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 100/249 (40%), Positives = 153/249 (61%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E + K+ A++ AE+ + KS FLA +SHE+RTPL AI+GFSEV+ + GPL N Sbjct: 236 IAELEVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLNN 295 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 Y EY I RSG +L+++N++LD+S+IE+GK L+ E +SL + + I +VQL A Sbjct: 296 ATYREYTTDIHRSGQHLLNLINEILDLSRIEAGKYELNEEAISLLDVAEDCIGMVQLRAR 355 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K I I F +P + AD +S++Q+ LN+LSNA+ FTP GG+I + TS + Sbjct: 356 GKNISISPQFELQLPSVWADEKSIRQVILNLLSNAVKFTPQGGEITVKVGWTSGGGQYVA 415 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 +RD G G+ E+ + FGQ + + +GTGLGLP+ +A++ + G+F + S + Sbjct: 416 IRDNGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFMLKSKLRE 475 Query: 801 GTLIEIIFP 809 GT + I P Sbjct: 476 GTEVIAILP 484 >gi|83311949|ref|YP_422213.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82946790|dbj|BAE51654.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 676 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 123/374 (32%), Positives = 200/374 (53%), Gaps = 11/374 (2%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-----F 497 +K ++ ++ +L I++ G+A+ + +++ N + ++ G P +I F Sbjct: 293 SKNRLSLQADRLQGIIDNMPQGVAVFASDDALIALNESAVRMLGLPQAEITPGTIDISLF 352 Query: 498 TVFLEQNT--PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 L N P + LT L+ +R+ E + ++ +R +P Sbjct: 353 MALLAANDTPPGRHSAQLTADLAESVRERPEMVFEHFAPSGLIMEVRS--SSMPGGGLI- 409 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L+ D+++ K+ + L AK AE+ + K+ FLA +SHE+RTPL AIIGFSE++K++ F Sbjct: 410 LSFTDVTDRKRVEQTLREAKDEAERGNRAKNTFLANISHELRTPLNAIIGFSEMMKHEIF 469 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GPL Y Y + I SG +L+++ND+LD+SK E+G +L V + + V AI L+ Sbjct: 470 GPLEPASYRTYVDDIHESGMHLLELINDILDMSKAEAGMTDLMEAAVHVPDLVRGAIRLL 529 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A I + +P +LAD R ++Q+ LN+ SNA+ FT GG + I T Sbjct: 530 TRRAENAGITLSEDLPPTLPLLLADERRLRQVILNLGSNAVKFTDDGGAVTIGAKVT-EA 588 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 I+ V DTG+GMT EL + M+PF Q + EG+GLGLPLAKA++ A+ G ++ Sbjct: 589 GFIITVADTGIGMTPEELLRVMEPFVQADTRLSRKYEGSGLGLPLAKALICAHGGTLHLD 648 Query: 796 STPAKGTLIEIIFP 809 S P +GT+ + FP Sbjct: 649 SQPGRGTVATVTFP 662 >gi|269958992|ref|YP_003328781.1| sensor histidine kinase [Anaplasma centrale str. Israel] gi|269848823|gb|ACZ49467.1| sensor histidine kinase [Anaplasma centrale str. Israel] Length = 469 Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 96/240 (40%), Positives = 150/240 (62%), Gaps = 1/240 (0%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L K+ AE+ES KS FLA VSHE+RTPL +IIGFSE+I+++ GP+G+ Y EY + Sbjct: 219 ELQEQKETAERESVSKSQFLANVSHELRTPLNSIIGFSEIIQSESLGPIGSEEYKEYISD 278 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I +SG +L ++ND+LD SK E+ K+ + F L + V + ++V A + ++ ++ Sbjct: 279 IHQSGVHLLSLINDILDFSKAEANKLTVEFVKFDLSKIVDSSFTMVLPRAKDAKVELKKE 338 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 +LAD + +KQ+ +NILSN++ FTP GG + + T E++++ + DTG+G+ Sbjct: 339 MPEEPVVMLADPKRMKQVIINILSNSVKFTPEGGLVKL-CTEIRGEQLVVEISDTGIGIA 397 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L K M FGQ + + EGTGLGLPL+K +V+ G F I S P GT++ + FP Sbjct: 398 QQDLYKVMSVFGQADSKHSRKYEGTGLGLPLSKKLVELMHGTFSIKSEPNLGTIVTLTFP 457 >gi|83309766|ref|YP_420030.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82944607|dbj|BAE49471.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 586 Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 98/244 (40%), Positives = 149/244 (61%), Gaps = 1/244 (0%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + +L A+ AE+ + KS+FLA +SHE+RTPL AIIGFS+V+++ FGP+GN RY E Sbjct: 342 ERTRELDLARCQAEEANRCKSEFLANMSHELRTPLNAIIGFSDVMRSGVFGPVGNARYGE 401 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y +I SG+ +L I+ND+LD++K+E G+ +L E + + AI LV A + Sbjct: 402 YIGWIWDSGHHLLRIINDILDLAKVEVGRFDLSRESTPVLPLLESAIRLVSERATRAEVN 461 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + + + D +KQ+ LN+LSNA+ FTP+GG + + H + V++ V DTG Sbjct: 462 VGCKAEPGLGDAMLDPLRMKQVLLNLLSNAVKFTPAGGSVSLEARHEGTDLVLI-VADTG 520 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +GM LEKA++PF Q+ +S R GTGLGLPLAK+ + + G + S P +GT + Sbjct: 521 IGMDEESLEKALQPFVQVESSLSRRYAGTGLGLPLAKSFSELHGGSLDLVSRPGEGTTVT 580 Query: 806 IIFP 809 + P Sbjct: 581 VRIP 584 >gi|304391854|ref|ZP_07373796.1| two-component sensor histidine kinase protein [Ahrensia sp. R2A130] gi|303296083|gb|EFL90441.1| two-component sensor histidine kinase protein [Ahrensia sp. R2A130] Length = 526 Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 96/225 (42%), Positives = 144/225 (64%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHE+RTPL AI+GFSE++ N+ GP+ N Y EY I RSG +L ++N++ Sbjct: 270 KSRFLATMSHELRTPLNAILGFSEIMSNEVMGPIDNDNYKEYLADIHRSGAHLLKLINEI 329 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+S+IE+G+ L+ EPV L AV E+ +V+L AN+K++ + ++P + AD R+V Sbjct: 330 LDLSRIEAGRYELNEEPVKLGHAVEESQQMVKLKANQKKVQLVIQLQPDMPAVWADARAV 389 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +QI LN+LSNA+ FTPSGG I + TS + +RDTG G+ E+ + FGQ Sbjct: 390 RQIVLNLLSNALKFTPSGGTIWLKCGWTSGGGQYITIRDTGPGIPEEEIPIVLSSFGQGS 449 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + +GTGLGLP+ +A++ + G+F + S GT + FP Sbjct: 450 IAIKSAEQGTGLGLPIVQALMQMHDGRFDLRSKLRAGTEVTATFP 494 >gi|241203816|ref|YP_002974912.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857706|gb|ACS55373.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 769 Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/264 (39%), Positives = 165/264 (62%), Gaps = 13/264 (4%) Query: 557 TMHDISEWKQ----EKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 T+ D+S +Q +K++LS A K+ AE + KS+FLA +SHE+RTPL AI+G Sbjct: 505 TIGDLSASRQTLEIQKSELSTANSNYQAEKERAEAANKAKSEFLANMSHELRTPLNAILG 564 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE+++NQ FGPLG+ +Y EYA I SG +L+++ND+LD+SKIE+G + LH E + L Sbjct: 565 FSEILQNQMFGPLGSLKYDEYARDIHDSGKHLLNVINDILDMSKIEAGHVRLHCERIDLV 624 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + E++ + A EK I+I + + ++AD R++KQ+ LN+LSNA+ FT +GG+I Sbjct: 625 PLIEESLRFTAMPAAEKNIVIEQRICSGLT-LMADRRAMKQVLLNLLSNAVKFTDNGGRI 683 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + T + V++ + DTG+G+ L K +PF Q+ + G+GLGL +++++ Sbjct: 684 AVRTRRV-DGAVVVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAISRSLT 742 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + G+ I S A GT+I + P Sbjct: 743 SLHGGRMKIRSREAVGTVISLRIP 766 >gi|154251573|ref|YP_001412397.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154155523|gb|ABS62740.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 502 Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 99/259 (38%), Positives = 159/259 (61%), Gaps = 6/259 (2%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 SE ++ + LS + E + K+DFLA +SHE+RTPL AIIGFSE+I NQ FGP+G P Sbjct: 242 SEQRRSERLLSRS----EAANRAKNDFLAIMSHELRTPLNAIIGFSEIISNQMFGPVGQP 297 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 +Y++YA I SG +L I+ND+LDISK E+GK+ L EP+ EA++ + + + A+E Sbjct: 298 KYVDYAADIRSSGAHLLSIINDILDISKAEAGKLQLEEEPIDPVEALNSTMRMFRQRASE 357 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + + ++IP I+AD R Q+A+N+ SNA+ FTP G++ + +++L V Sbjct: 358 LGVELSFRVRDDIPWIIADPRLFNQVAINLTSNALKFTPENGEVSVELGLNPAGDMVLAV 417 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RDTG+G+ + + +PF Q+ ++ +GTGLGLPL + +++ + G + S +G Sbjct: 418 RDTGIGIKAADTTRIFEPFVQVEDAMSRTQQGTGLGLPLVRKIMNLHGGSIELESVVDEG 477 Query: 802 TLIEIIFP--LYDTSHPHD 818 T+ FP + + P+D Sbjct: 478 TIARATFPRSRFVAAQPND 496 >gi|319405334|emb|CBI78952.1| two-component sensor histidine kinase [Bartonella sp. AR 15-3] Length = 769 Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 102/243 (41%), Positives = 153/243 (62%), Gaps = 8/243 (3%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L K+ AE + KS+FLA +SHE+RTPL AI+GFSE++ FGPLG+ RY EY + I Sbjct: 529 LQEEKERAESANKAKSEFLANISHELRTPLNAILGFSEIMLQSTFGPLGSQRYKEYVHDI 588 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG +L ++ND+LD+SKIE+G+ L + ++L+ +SE I + A K+I S Sbjct: 589 HNSGTHLLTLINDILDMSKIEAGRFTLDRKNINLEPIISETIRTLTPQAQAKKI----SL 644 Query: 691 ANNIPRIL---ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 NI + L D R++KQI LN++SNA+ FTPSGG I I +N +I ++DTGVG Sbjct: 645 TTNIEQKLHANVDCRAMKQIFLNLISNAVKFTPSGGSIDIRAFQKNN-NLIFSIKDTGVG 703 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + ++K +PF Q+ N G+GLGL +++++++ + GK I S AKGT++ II Sbjct: 704 IPQEAIKKLGQPFEQVENQFTKTHPGSGLGLAISRSLLELHKGKLEITSKEAKGTIVTII 763 Query: 808 FPL 810 P+ Sbjct: 764 MPI 766 >gi|260459403|ref|ZP_05807658.1| histidine kinase [Mesorhizobium opportunistum WSM2075] gi|259034957|gb|EEW36213.1| histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 506 Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 98/250 (39%), Positives = 155/250 (62%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E + K+ A++ AE + KS FLA +SHE+RTPL AI+GFSEV+ N+ GP+ N Sbjct: 237 IAELETAKSMSDEARRRAEDANLAKSRFLASMSHELRTPLNAILGFSEVMANEVLGPMSN 296 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P Y +YA+ + SG +LD++N++LD+S+IE+G+ L+ EPV L V + +++L A Sbjct: 297 PTYRDYAHDVHDSGQHLLDLINEILDLSRIEAGRYQLNEEPVMLLNIVEDCCHMMELKAR 356 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K I + F +PR+ AD R+++QI LN+LSNAI FT +GG+I + T+ + Sbjct: 357 NKDIRVIQDFEQTLPRLFADERALRQITLNLLSNAIKFTATGGEIRVRVGWTAGGGQYIS 416 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 ++D G G+ E+ + FGQ + + +GTGLGLP+ + ++ + G+F + S + Sbjct: 417 IKDNGPGIPEDEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQGLLAMHGGEFELHSKLRE 476 Query: 801 GTLIEIIFPL 810 GT IFPL Sbjct: 477 GTEAIAIFPL 486 >gi|163842891|ref|YP_001627295.1| PAS domain-containing protein [Brucella suis ATCC 23445] gi|163673614|gb|ABY37725.1| PAS domain S-box [Brucella suis ATCC 23445] Length = 783 Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/264 (39%), Positives = 158/264 (59%), Gaps = 13/264 (4%) Query: 557 TMHDIS-----------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 T+HD+S E + K S K+ AE + KS+FLA +SHE+RTPL AIIG Sbjct: 505 TVHDLSIARKGERDRVRELSELARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIG 564 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE+I+ FGPLG+ RY EY N I SGN +L+++ND+LD+SKIE+G +L E + L Sbjct: 565 FSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLC 624 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 ++E + ++ L A EK I + T + + + AD R++KQ+ +N+LSNA+ FT GG+I Sbjct: 625 PLINETVRIISLQAEEKNIAVETRIEDAME-LYADRRAIKQVLINLLSNAVKFTSYGGRI 683 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + T + + ++DTGVG+ L K +PF Q+ N G+GLGL +++++ Sbjct: 684 TVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLA 742 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + + G I ST GT++ + P Sbjct: 743 ELHGGWLRIRSTERVGTVVSVCIP 766 >gi|319898572|ref|YP_004158665.1| two-component sensor histidine kinase [Bartonella clarridgeiae 73] gi|319402536|emb|CBI76079.1| two-component sensor histidine kinase [Bartonella clarridgeiae 73] Length = 769 Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/243 (42%), Positives = 155/243 (63%), Gaps = 8/243 (3%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L K+ AE + KS+FLA +SHE+RTPL AI+GFSE++ FGPLG+ RY EY + I Sbjct: 529 LQEEKEKAESANKAKSEFLANMSHELRTPLNAILGFSEIMLQSTFGPLGSQRYKEYMHDI 588 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG +L ++ND+LD+SKIE+G+ L + ++L+ +SE I + A K+I S Sbjct: 589 HNSGTHLLTLINDILDMSKIEAGRFTLDCKNINLEPIISETIRTLTPQAQAKKI----SL 644 Query: 691 ANNI-PRILADL--RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 NI P++ AD+ R++KQI LN++SNA+ FTPSGG I I +N +I ++DTGVG Sbjct: 645 TTNIEPKLHADVDCRAMKQIFLNLISNAVKFTPSGGSIDIRAFQKNN-NLIFSIKDTGVG 703 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + ++K KPF Q+ N G+GLGL +++++++ + GK I S AKGT++ I Sbjct: 704 IPKEAIKKLGKPFEQVENQFTKTHPGSGLGLAISRSLLELHKGKLEITSKEAKGTIVTIT 763 Query: 808 FPL 810 P+ Sbjct: 764 MPI 766 >gi|306840195|ref|ZP_07472975.1| PAS domain S-box-containing protein [Brucella sp. NF 2653] gi|306404726|gb|EFM61025.1| PAS domain S-box-containing protein [Brucella sp. NF 2653] Length = 769 Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/264 (39%), Positives = 158/264 (59%), Gaps = 13/264 (4%) Query: 557 TMHDIS-----------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 T+HD+S E + K S K+ AE + KS+FLA +SHE+RTPL AIIG Sbjct: 491 TVHDLSIARKGERDRVRELSELARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIG 550 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE+I+ FGPLG+ RY EY N I SGN +L+++ND+LD+SKIE+G +L E + L Sbjct: 551 FSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLC 610 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 ++E + ++ L A EK I + T + + + AD R++KQ+ +N+LSNA+ FT GG+I Sbjct: 611 PLINETVRIISLQAEEKNIAVETRIEDAME-LYADRRAIKQVLINLLSNAVKFTSYGGRI 669 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + T + + ++DTGVG+ L K +PF Q+ N G+GLGL +++++ Sbjct: 670 TVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLA 728 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + + G I ST GT++ + P Sbjct: 729 ELHGGWLRIRSTERVGTVVSVCIP 752 >gi|319406908|emb|CBI80543.1| two-component sensor histidine kinase [Bartonella sp. 1-1C] Length = 769 Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 102/243 (41%), Positives = 153/243 (62%), Gaps = 8/243 (3%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L K+ AE + KS+FLA +SHE+RTPL AI+GFSE++ FGPLG+ RY EY + I Sbjct: 529 LQEEKERAESANKAKSEFLANISHELRTPLNAILGFSEIMLQSTFGPLGSQRYKEYMHDI 588 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG +L ++ND+LD+SKIE+G+ L + ++L+ +SE I + A K+I S Sbjct: 589 HNSGTHLLTLINDILDMSKIEAGRFTLDRKNINLEPIISETIRTLTPQAQAKKI----SL 644 Query: 691 ANNIPRIL---ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 NI + L D R++KQI LN++SNA+ FTPSGG I I +N +I ++DTGVG Sbjct: 645 TTNIEQKLHADVDCRAMKQIFLNLISNAVKFTPSGGSIDIRAFQKNN-NLIFSIKDTGVG 703 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + ++K +PF Q+ N G+GLGL +++++++ + GK I S AKGT++ II Sbjct: 704 IPQEAIKKLGQPFEQVENQFTKTHPGSGLGLAISRSLLELHKGKLEITSKEAKGTIVTII 763 Query: 808 FPL 810 P+ Sbjct: 764 MPI 766 >gi|254713753|ref|ZP_05175564.1| PAS domain S-box-containing protein [Brucella ceti M644/93/1] gi|254717189|ref|ZP_05179000.1| PAS domain S-box-containing protein [Brucella ceti M13/05/1] gi|261219005|ref|ZP_05933286.1| multi-sensor signal transduction histidine kinase [Brucella ceti M13/05/1] gi|261321495|ref|ZP_05960692.1| multi-sensor signal transduction histidine kinase [Brucella ceti M644/93/1] gi|260924094|gb|EEX90662.1| multi-sensor signal transduction histidine kinase [Brucella ceti M13/05/1] gi|261294185|gb|EEX97681.1| multi-sensor signal transduction histidine kinase [Brucella ceti M644/93/1] Length = 783 Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/264 (39%), Positives = 158/264 (59%), Gaps = 13/264 (4%) Query: 557 TMHDIS-----------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 T+HD+S E + K S K+ AE + KS+FLA +SHE+RTPL AIIG Sbjct: 505 TVHDLSIARKGERDRVRELSELARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIG 564 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE+I+ FGPLG+ RY EY N I SGN +L+++ND+LD+SKIE+G +L E + L Sbjct: 565 FSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLC 624 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 ++E + ++ L A EK I + T + + + AD R++KQ+ +N+LSNA+ FT GG+I Sbjct: 625 PLINETVRIISLQAEEKNIAVETRIEDAME-LYADRRAIKQVLINLLSNAVKFTSYGGRI 683 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + T + + ++DTGVG+ L K +PF Q+ N G+GLGL +++++ Sbjct: 684 TVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLA 742 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + + G I ST GT++ + P Sbjct: 743 ELHGGWLRIRSTERVGTVVSVCIP 766 >gi|17987608|ref|NP_540242.1| sensory transduction protein kinase [Brucella melitensis bv. 1 str. 16M] gi|23501503|ref|NP_697630.1| sensory box histidine kinase [Brucella suis 1330] gi|62289578|ref|YP_221371.1| histidine kinase [Brucella abortus bv. 1 str. 9-941] gi|148559697|ref|YP_001258609.1| sensory box histidine kinase [Brucella ovis ATCC 25840] gi|161618591|ref|YP_001592478.1| multi-sensor signal transduction histidine kinase [Brucella canis ATCC 23365] gi|225852141|ref|YP_002732374.1| PAS domain S-box-containing protein [Brucella melitensis ATCC 23457] gi|254688899|ref|ZP_05152153.1| PAS domain S-box-containing protein [Brucella abortus bv. 6 str. 870] gi|254697031|ref|ZP_05158859.1| PAS domain S-box-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|254701410|ref|ZP_05163238.1| PAS domain S-box-containing protein [Brucella suis bv. 5 str. 513] gi|254703955|ref|ZP_05165783.1| PAS domain S-box-containing protein [Brucella suis bv. 3 str. 686] gi|254707666|ref|ZP_05169494.1| PAS domain S-box-containing protein [Brucella pinnipedialis M163/99/10] gi|254709750|ref|ZP_05171561.1| PAS domain S-box-containing protein [Brucella pinnipedialis B2/94] gi|254729930|ref|ZP_05188508.1| PAS domain S-box-containing protein [Brucella abortus bv. 4 str. 292] gi|256031240|ref|ZP_05444854.1| PAS domain S-box-containing protein [Brucella pinnipedialis M292/94/1] gi|256044318|ref|ZP_05447222.1| PAS domain S-box-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|256113155|ref|ZP_05454032.1| PAS domain S-box-containing protein [Brucella melitensis bv. 3 str. Ether] gi|256254648|ref|ZP_05460184.1| PAS domain S-box-containing protein [Brucella ceti B1/94] gi|256257147|ref|ZP_05462683.1| PAS domain S-box-containing protein [Brucella abortus bv. 9 str. C68] gi|256264347|ref|ZP_05466879.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9] gi|256369055|ref|YP_003106563.1| sensory box histidine kinase [Brucella microti CCM 4915] gi|260168376|ref|ZP_05755187.1| sensory box histidine kinase [Brucella sp. F5/99] gi|260563672|ref|ZP_05834158.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M] gi|260566796|ref|ZP_05837266.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40] gi|260754384|ref|ZP_05866732.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 6 str. 870] gi|260757603|ref|ZP_05869951.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 4 str. 292] gi|260761429|ref|ZP_05873772.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 2 str. 86/8/59] gi|260883409|ref|ZP_05895023.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 9 str. C68] gi|261221823|ref|ZP_05936104.1| multi-sensor signal transduction histidine kinase [Brucella ceti B1/94] gi|261315163|ref|ZP_05954360.1| multi-sensor signal transduction histidine kinase [Brucella pinnipedialis M163/99/10] gi|261317281|ref|ZP_05956478.1| multi-sensor signal transduction histidine kinase [Brucella pinnipedialis B2/94] gi|261751949|ref|ZP_05995658.1| multi-sensor signal transduction histidine kinase [Brucella suis bv. 5 str. 513] gi|261754607|ref|ZP_05998316.1| multi-sensor signal transduction histidine kinase [Brucella suis bv. 3 str. 686] gi|261757836|ref|ZP_06001545.1| sensory box histidine kinase [Brucella sp. F5/99] gi|265988319|ref|ZP_06100876.1| multi-sensor signal transduction histidine kinase [Brucella pinnipedialis M292/94/1] gi|265990730|ref|ZP_06103287.1| multi-sensor signal transduction histidine kinase [Brucella melitensis bv. 1 str. Rev.1] gi|265994568|ref|ZP_06107125.1| multi-sensor signal transduction histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|297247993|ref|ZP_06931711.1| two-component system, PleD family, sensor histidine kinase PleC [Brucella abortus bv. 5 str. B3196] gi|17983316|gb|AAL52506.1| sensory transduction protein kinase [Brucella melitensis bv. 1 str. 16M] gi|23347410|gb|AAN29545.1| sensory box histidine kinase [Brucella suis 1330] gi|62195710|gb|AAX74010.1| histidine kinase [Brucella abortus bv. 1 str. 9-941] gi|148370954|gb|ABQ60933.1| sensory box histidine kinase [Brucella ovis ATCC 25840] gi|161335402|gb|ABX61707.1| multi-sensor signal transduction histidine kinase [Brucella canis ATCC 23365] gi|225640506|gb|ACO00420.1| PAS domain S-box-containing protein [Brucella melitensis ATCC 23457] gi|255999215|gb|ACU47614.1| sensory box histidine kinase [Brucella microti CCM 4915] gi|260153688|gb|EEW88780.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M] gi|260156314|gb|EEW91394.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40] gi|260667921|gb|EEX54861.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 4 str. 292] gi|260671861|gb|EEX58682.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 2 str. 86/8/59] gi|260674492|gb|EEX61313.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 6 str. 870] gi|260872937|gb|EEX80006.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 9 str. C68] gi|260920407|gb|EEX87060.1| multi-sensor signal transduction histidine kinase [Brucella ceti B1/94] gi|261296504|gb|EEY00001.1| multi-sensor signal transduction histidine kinase [Brucella pinnipedialis B2/94] gi|261304189|gb|EEY07686.1| multi-sensor signal transduction histidine kinase [Brucella pinnipedialis M163/99/10] gi|261737820|gb|EEY25816.1| sensory box histidine kinase [Brucella sp. F5/99] gi|261741702|gb|EEY29628.1| multi-sensor signal transduction histidine kinase [Brucella suis bv. 5 str. 513] gi|261744360|gb|EEY32286.1| multi-sensor signal transduction histidine kinase [Brucella suis bv. 3 str. 686] gi|262765681|gb|EEZ11470.1| multi-sensor signal transduction histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|263001514|gb|EEZ14089.1| multi-sensor signal transduction histidine kinase [Brucella melitensis bv. 1 str. Rev.1] gi|263094621|gb|EEZ18419.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9] gi|264660516|gb|EEZ30777.1| multi-sensor signal transduction histidine kinase [Brucella pinnipedialis M292/94/1] gi|297175162|gb|EFH34509.1| two-component system, PleD family, sensor histidine kinase PleC [Brucella abortus bv. 5 str. B3196] gi|326408641|gb|ADZ65706.1| PAS domain S-box-containing protein [Brucella melitensis M28] gi|326538363|gb|ADZ86578.1| PAS domain S-box-containing protein [Brucella melitensis M5-90] Length = 783 Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/264 (39%), Positives = 158/264 (59%), Gaps = 13/264 (4%) Query: 557 TMHDIS-----------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 T+HD+S E + K S K+ AE + KS+FLA +SHE+RTPL AIIG Sbjct: 505 TVHDLSIARKGERDRVRELSELARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIG 564 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE+I+ FGPLG+ RY EY N I SGN +L+++ND+LD+SKIE+G +L E + L Sbjct: 565 FSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLC 624 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 ++E + ++ L A EK I + T + + + AD R++KQ+ +N+LSNA+ FT GG+I Sbjct: 625 PLINETVRIISLQAEEKNIAVETRIEDAME-LYADRRAIKQVLINLLSNAVKFTSYGGRI 683 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + T + + ++DTGVG+ L K +PF Q+ N G+GLGL +++++ Sbjct: 684 TVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLA 742 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + + G I ST GT++ + P Sbjct: 743 ELHGGWLRIRSTERVGTVVSVCIP 766 >gi|254693380|ref|ZP_05155208.1| PAS domain S-box-containing protein [Brucella abortus bv. 3 str. Tulya] gi|261213630|ref|ZP_05927911.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 3 str. Tulya] gi|260915237|gb|EEX82098.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 3 str. Tulya] Length = 783 Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/264 (39%), Positives = 158/264 (59%), Gaps = 13/264 (4%) Query: 557 TMHDIS-----------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 T+HD+S E + K S K+ AE + KS+FLA +SHE+RTPL AIIG Sbjct: 505 TVHDLSIARKGERDRVRELSELARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIG 564 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE+I+ FGPLG+ RY EY N I SGN +L+++ND+LD+SKIE+G +L E + L Sbjct: 565 FSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLC 624 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 ++E + ++ L A EK I + T + + + AD R++KQ+ +N+LSNA+ FT GG+I Sbjct: 625 PLINETVRIISLQAEEKNIAVETRIEDAME-LYADRRAIKQVLINLLSNAVKFTSYGGRI 683 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + T + + ++DTGVG+ L K +PF Q+ N G+GLGL +++++ Sbjct: 684 TVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLA 742 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + + G I ST GT++ + P Sbjct: 743 ELHGGWLRIRSTERVGTVVSVCIP 766 >gi|256060749|ref|ZP_05450912.1| PAS domain S-box-containing protein [Brucella neotomae 5K33] gi|261324738|ref|ZP_05963935.1| multi-sensor signal transduction histidine kinase [Brucella neotomae 5K33] gi|261300718|gb|EEY04215.1| multi-sensor signal transduction histidine kinase [Brucella neotomae 5K33] Length = 783 Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/264 (39%), Positives = 158/264 (59%), Gaps = 13/264 (4%) Query: 557 TMHDIS-----------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 T+HD+S E + K S K+ AE + KS+FLA +SHE+RTPL AIIG Sbjct: 505 TVHDLSIARKGERDRVRELSELARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIG 564 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE+I+ FGPLG+ RY EY N I SGN +L+++ND+LD+SKIE+G +L E + L Sbjct: 565 FSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLC 624 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 ++E + ++ L A EK I + T + + + AD R++KQ+ +N+LSNA+ FT GG+I Sbjct: 625 PLINETVRIISLQAEEKNIAVETRIEDAME-LYADRRAIKQVLINLLSNAVKFTSYGGRI 683 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + T + + ++DTGVG+ L K +PF Q+ N G+GLGL +++++ Sbjct: 684 TVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLA 742 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + + G I ST GT++ + P Sbjct: 743 ELHGGWLRIRSTERVGTVVSVCIP 766 >gi|306842114|ref|ZP_07474784.1| PAS domain S-box-containing protein [Brucella sp. BO2] gi|306287787|gb|EFM59215.1| PAS domain S-box-containing protein [Brucella sp. BO2] Length = 783 Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/264 (39%), Positives = 158/264 (59%), Gaps = 13/264 (4%) Query: 557 TMHDIS-----------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 T+HD+S E + K S K+ AE + KS+FLA +SHE+RTPL AIIG Sbjct: 505 TVHDLSIARKGERDRVRELSELARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIG 564 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE+I+ FGPLG+ RY EY N I SGN +L+++ND+LD+SKIE+G +L E + L Sbjct: 565 FSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLC 624 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 ++E + ++ L A EK I + T + + + AD R++KQ+ +N+LSNA+ FT GG+I Sbjct: 625 PLINETVRIISLQAEEKNIAVETRIEDAME-LYADRRAIKQVLINLLSNAVKFTSYGGRI 683 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + T + + ++DTGVG+ L K +PF Q+ N G+GLGL +++++ Sbjct: 684 TVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLA 742 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + + G I ST GT++ + P Sbjct: 743 ELHGGWLRIRSTERVGTVVSVCIP 766 >gi|294851985|ref|ZP_06792658.1| two-component system protein [Brucella sp. NVSL 07-0026] gi|294820574|gb|EFG37573.1| two-component system protein [Brucella sp. NVSL 07-0026] Length = 798 Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/264 (39%), Positives = 158/264 (59%), Gaps = 13/264 (4%) Query: 557 TMHDIS-----------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 T+HD+S E + K S K+ AE + KS+FLA +SHE+RTPL AIIG Sbjct: 520 TVHDLSIARKGERDRVRELSELARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIG 579 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE+I+ FGPLG+ RY EY N I SGN +L+++ND+LD+SKIE+G +L E + L Sbjct: 580 FSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLC 639 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 ++E + ++ L A EK I + T + + + AD R++KQ+ +N+LSNA+ FT GG+I Sbjct: 640 PLINETVRIISLQAEEKNIAVETRIEDAME-LYADRRAIKQVLINLLSNAVKFTSYGGRI 698 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + T + + ++DTGVG+ L K +PF Q+ N G+GLGL +++++ Sbjct: 699 TVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLA 757 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + + G I ST GT++ + P Sbjct: 758 ELHGGWLRIRSTERVGTVVSVCIP 781 >gi|254718765|ref|ZP_05180576.1| PAS domain S-box-containing protein [Brucella sp. 83/13] gi|265983743|ref|ZP_06096478.1| multi-sensor signal transduction histidine kinase [Brucella sp. 83/13] gi|264662335|gb|EEZ32596.1| multi-sensor signal transduction histidine kinase [Brucella sp. 83/13] Length = 783 Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/264 (39%), Positives = 158/264 (59%), Gaps = 13/264 (4%) Query: 557 TMHDIS-----------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 T+HD+S E + K S K+ AE + KS+FLA +SHE+RTPL AIIG Sbjct: 505 TVHDLSIARKGERDRVRELSELARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIG 564 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE+I+ FGPLG+ RY EY N I SGN +L+++ND+LD+SKIE+G +L E + L Sbjct: 565 FSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLC 624 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 ++E + ++ L A EK I + T + + + AD R++KQ+ +N+LSNA+ FT GG+I Sbjct: 625 PLINETVRIISLQAEEKNIAVETRIEDAME-LYADRRAIKQVLINLLSNAVKFTSYGGRI 683 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + T + + ++DTGVG+ L K +PF Q+ N G+GLGL +++++ Sbjct: 684 TVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLA 742 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + + G I ST GT++ + P Sbjct: 743 ELHGGWLRIRSTERVGTVVSVCIP 766 >gi|82699508|ref|YP_414082.1| PAS domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189023837|ref|YP_001934605.1| sensory box histidine kinase [Brucella abortus S19] gi|260545661|ref|ZP_05821402.1| sensory box histidine kinase [Brucella abortus NCTC 8038] gi|82615609|emb|CAJ10596.1| PAS domain:PAC motif:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Bacterial sensor protein, C-terminal:Hist [Brucella melitensis biovar Abortus 2308] gi|189019409|gb|ACD72131.1| sensory box histidine kinase [Brucella abortus S19] gi|260097068|gb|EEW80943.1| sensory box histidine kinase [Brucella abortus NCTC 8038] Length = 783 Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/264 (39%), Positives = 158/264 (59%), Gaps = 13/264 (4%) Query: 557 TMHDIS-----------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 T+HD+S E + K S K+ AE + KS+FLA +SHE+RTPL AIIG Sbjct: 505 TVHDLSIARKGERDRVRELSELARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIG 564 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE+I+ FGPLG+ RY EY N I SGN +L+++ND+LD+SKIE+G +L E + L Sbjct: 565 FSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLC 624 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 ++E + ++ L A EK I + T + + + AD R++KQ+ +N+LSNA+ FT GG+I Sbjct: 625 PLINETVRIISLQAEEKNIAVETRIEDAME-LYADRRAIKQVLINLLSNAVKFTSYGGRI 683 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + T + + ++DTGVG+ L K +PF Q+ N G+GLGL +++++ Sbjct: 684 TVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLA 742 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + + G I ST GT++ + P Sbjct: 743 ELHGGWLRIRSTERVGTVVSVCIP 766 >gi|306845222|ref|ZP_07477798.1| PAS domain S-box-containing protein [Brucella sp. BO1] gi|306274381|gb|EFM56188.1| PAS domain S-box-containing protein [Brucella sp. BO1] Length = 783 Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/264 (39%), Positives = 158/264 (59%), Gaps = 13/264 (4%) Query: 557 TMHDIS-----------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 T+HD+S E + K S K+ AE + KS+FLA +SHE+RTPL AIIG Sbjct: 505 TVHDLSIARKGERDRVRELSELARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIG 564 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE+I+ FGPLG+ RY EY N I SGN +L+++ND+LD+SKIE+G +L E + L Sbjct: 565 FSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLC 624 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 ++E + ++ L A EK I + T + + + AD R++KQ+ +N+LSNA+ FT GG+I Sbjct: 625 PLINETVRIISLQAEEKNIAVETRIEDAME-LYADRRAIKQVLINLLSNAVKFTSYGGRI 683 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + T + + ++DTGVG+ L K +PF Q+ N G+GLGL +++++ Sbjct: 684 TVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLA 742 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + + G I ST GT++ + P Sbjct: 743 ELHGGWLRIRSTERVGTVVSVCIP 766 >gi|225627123|ref|ZP_03785161.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo] gi|225617958|gb|EEH15002.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo] Length = 798 Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/264 (39%), Positives = 158/264 (59%), Gaps = 13/264 (4%) Query: 557 TMHDIS-----------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 T+HD+S E + K S K+ AE + KS+FLA +SHE+RTPL AIIG Sbjct: 520 TVHDLSIARKGERDRVRELSELARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIG 579 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE+I+ FGPLG+ RY EY N I SGN +L+++ND+LD+SKIE+G +L E + L Sbjct: 580 FSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLC 639 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 ++E + ++ L A EK I + T + + + AD R++KQ+ +N+LSNA+ FT GG+I Sbjct: 640 PLINETVRIISLQAEEKNIAVETRIEDAME-LYADRRAIKQVLINLLSNAVKFTSYGGRI 698 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + T + + ++DTGVG+ L K +PF Q+ N G+GLGL +++++ Sbjct: 699 TVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLA 757 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + + G I ST GT++ + P Sbjct: 758 ELHGGWLRIRSTERVGTVVSVCIP 781 >gi|154251880|ref|YP_001412704.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154155830|gb|ABS63047.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 717 Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 97/246 (39%), Positives = 153/246 (62%), Gaps = 1/246 (0%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q N L A+ +AE ++ KS FLA +SHE+RTPL AIIGFSEV+ + FGP+ N RY Sbjct: 459 EQTANDLRDARDVAELANASKSQFLANMSHELRTPLNAIIGFSEVMNGELFGPIENERYK 518 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +Y I +S + +L ++ND+LD+SKIE+ + L+ E + + + V+ +++ A+E + Sbjct: 519 DYVGDIHKSSSHLLSLINDILDLSKIEADRYELYEEELDVMDVVASCERMMRHRADEAGV 578 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 ++ + + +P ++AD R+++QI LN++SNA+ FTP GG I + + + RV DT Sbjct: 579 ALKVTVEDELPLLMADKRALRQIVLNLVSNAVKFTPKGGLIQLGAFMEPDGRMAFRVADT 638 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRG-EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 GVGM+ ++ A++PF QI + EGTGLGLPL +A+ + I S P +GT Sbjct: 639 GVGMSKKDIPIALEPFRQIGKDSNVYSTEGTGLGLPLTRALARLHGASLVIESEPGEGTT 698 Query: 804 IEIIFP 809 I I P Sbjct: 699 ITIRMP 704 >gi|260462368|ref|ZP_05810576.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium opportunistum WSM2075] gi|259031862|gb|EEW33130.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 773 Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 96/233 (41%), Positives = 146/233 (62%), Gaps = 2/233 (0%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE + KS+FLA +SHE+RTPL AIIGFSE+++ FGPLG+ RY EYA I+ SG + Sbjct: 532 AEAANRAKSEFLANMSHELRTPLNAIIGFSELMEQGLFGPLGSSRYEEYATDINSSGKYL 591 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ND+LD+SKIE+G+ +L E + L +SE + +V L A +K I + T A+ + + Sbjct: 592 LGVINDILDMSKIEAGQFSLDQEQIDLGPLISETVRVVSLQAAQKAITVETRIADALT-L 650 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 AD R++KQI +N+LSNA+ FT GG I + +TS ++L + D G G+ L K Sbjct: 651 FADRRAIKQIVINLLSNAVKFTGQGGHISVRARNTSG-ALVLTIEDNGCGIPKEALGKLG 709 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +PF Q+ N G+GLGL +++++ + G I ST GT++ + P+ Sbjct: 710 RPFEQVQNQFSKNHAGSGLGLAISRSLAELQGGALKIRSTEGVGTIVSVRIPV 762 >gi|237815075|ref|ZP_04594073.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A] gi|237789912|gb|EEP64122.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A] Length = 798 Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 103/264 (39%), Positives = 158/264 (59%), Gaps = 13/264 (4%) Query: 557 TMHDIS-----------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 T+HD+S E + K S K+ AE + KS+FLA +SHE+RTPL AIIG Sbjct: 520 TVHDLSIARKGERDRVRELSELARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIG 579 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE+I+ FGPLG+ RY EY N I SGN +L+++ND+LD+SKIE+G +L E + L Sbjct: 580 FSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLC 639 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 ++E + ++ L A EK I + T + + + AD R++KQ+ +N+LSNA+ FT GG+I Sbjct: 640 PLINETVRIISLQAEEKNIAVETRIEDAME-LYADRRAIKQVLINLLSNAVKFTSYGGRI 698 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + T + + ++DTGVG+ L K +PF Q+ N G+GLGL +++++ Sbjct: 699 TVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLA 757 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + + G I ST GT++ + P Sbjct: 758 ELHGGWLRIRSTERVGTVVSVCIP 781 >gi|146341839|ref|YP_001206887.1| two-component sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146194645|emb|CAL78670.1| putative two-component sensor histidine kinase with a ATP-binding domain (C-term) [Bradyrhizobium sp. ORS278] Length = 774 Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 93/240 (38%), Positives = 152/240 (63%), Gaps = 2/240 (0%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 K S K AE+ + KS FLA +SHE+RTPL AIIGFSE++ + FG LG+ +Y EY + Sbjct: 523 KYSQEKTRAEEANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGSLGSEKYQEYCHD 582 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG +L+++ND+LD+SKIE+G+M L EP+ L + ++E++ +V A +K +++ Sbjct: 583 ILTSGQYLLEVINDILDMSKIEAGRMKLDMEPLDLAKTLAESLRVVSGRAQDKSLVLDAD 642 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 NIP ++AD R+ KQI +N+LSNA+ FTP GG++ + + ++V+L + DTG+G+ Sbjct: 643 IEGNIP-VIADRRATKQIMVNLLSNAVKFTPEGGRVTMR-SRVFEDKVVLIIADTGIGIP 700 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L + +PF Q+ + G+GLGL +A+++ + G + S GT++ + P Sbjct: 701 AQSLARLGRPFEQVESQMTKTYHGSGLGLAIARSLAQLHGGSMRLRSRLEHGTVVRVTLP 760 >gi|86750547|ref|YP_487043.1| histidine kinase [Rhodopseudomonas palustris HaA2] gi|86573575|gb|ABD08132.1| histidine kinase [Rhodopseudomonas palustris HaA2] Length = 771 Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 108/286 (37%), Positives = 168/286 (58%), Gaps = 8/286 (2%) Query: 528 ITLGSTKEEKL----LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 IT E+KL L LR + L S Y L I E K S K AE+ + Sbjct: 480 ITRIKAHEQKLVDNDLRLRATVADLKISQ-YKLERQAI-ELADLARKYSEEKTRAEEANQ 537 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS FLA +SHE+RTPL AIIGFSE++ + FG LG+ +Y EY + I SG+ +L+++ND Sbjct: 538 TKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGTLGSEKYQEYCHDIMTSGHYLLEVIND 597 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 +LD+SKIE+G+M L E + L + E++ +V A K++ + + ++IP I+AD R+ Sbjct: 598 ILDMSKIEAGRMRLDMEELDLARTLGESLKVVAGRAEHKQLELLSEIEDDIP-IVADRRA 656 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 VKQI +N+LSNA+ FTP GG++ + + N ++L + D+G+G+ L + +PF Q+ Sbjct: 657 VKQILINLLSNAVKFTPDGGRVTVRSRTLPN-AIVLMIADSGIGIAPQSLRRLGQPFEQV 715 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + G+GLGL +AK++ + G + ST GT++ + P Sbjct: 716 ESQLSKTYHGSGLGLAIAKSLTTLHGGSMRLRSTLGAGTVVMVTLP 761 >gi|75675405|ref|YP_317826.1| Signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] gi|74420275|gb|ABA04474.1| signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] Length = 536 Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 103/249 (41%), Positives = 152/249 (61%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I E +Q K A+ AE + KS FLA++SHE+RTPL AI+GFSEV+K++ FG Sbjct: 240 IGELEQAKAISDEARHRAESANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGEHAV 299 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 Y Y+ I SG +L+++N++LD+S+IE+G+ L+ E VSL V+E L++L A+ Sbjct: 300 AVYKTYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAVSLVHVVTECHHLLKLRAS 359 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + I I F +PRI D R+ +QI LN+LSNAI FTP GG+I + T++ L Sbjct: 360 NRGITIHEIFEQGMPRIWGDERATRQIVLNLLSNAIKFTPQGGEIWLKVGWTASGGQYLS 419 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+D G G+ E+ + FGQ NS + +G GLGLP+AK+++D + G F + S Sbjct: 420 VKDNGSGIAEDEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLRSKLRV 479 Query: 801 GTLIEIIFP 809 GT + + FP Sbjct: 480 GTEVIVTFP 488 >gi|307945461|ref|ZP_07660797.1| Non-motile and phage-resistance protein [Roseibium sp. TrichSKD4] gi|307771334|gb|EFO30559.1| Non-motile and phage-resistance protein [Roseibium sp. TrichSKD4] Length = 790 Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 92/246 (37%), Positives = 153/246 (62%), Gaps = 2/246 (0%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +K S + AE + KS+FLA +SHE+RTPL AIIGFS+++ + FGPLG +Y +Y + Sbjct: 539 DKYSEERNRAENANKAKSEFLANISHELRTPLNAIIGFSDIMNKEMFGPLGTEKYSDYCH 598 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I SG +L+++ND+LD+SKIE+G+M++ E +S EA +A ++ A EK I + Sbjct: 599 DIHNSGTYLLNVINDILDMSKIEAGRMSIETEDLSAKEAAEDAARIMSTAAREKHIDVTC 658 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + + I ++ AD R++KQI LN+L+NA+ FTP G + + H + + DTG+G+ Sbjct: 659 TVEDGI-QVRADRRALKQILLNLLANAVKFTPEHGTVSLK-AHQEKNRICFEISDTGIGI 716 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + ++ + +PF Q+ N +G+GLGL +A+++++ + GK I S +GT + + Sbjct: 717 ADKDIARLAQPFVQVENQFTKTHQGSGLGLAIARSLIEIHGGKLEISSELGEGTHVRFLL 776 Query: 809 PLYDTS 814 P D S Sbjct: 777 PSSDPS 782 >gi|118590259|ref|ZP_01547662.1| periplasmic sensor signal transduction histidine kinase [Stappia aggregata IAM 12614] gi|118437231|gb|EAV43869.1| periplasmic sensor signal transduction histidine kinase [Stappia aggregata IAM 12614] Length = 518 Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 95/251 (37%), Positives = 157/251 (62%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H I E + A++ AE + KS FLA +SHE+RTPL AI+GFSE++K++ G + Sbjct: 237 HLIVELESANAMSDEARRRAEAANLAKSRFLATMSHELRTPLNAILGFSEIMKDEVLGKM 296 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N Y YA I SG +L+++N++LD+S+IE+G+ LH EP+ LD+ V E +++++ Sbjct: 297 HNKNYQSYAEDIHGSGQHLLNLINEILDLSRIEAGRHELHEEPIFLDDIVEECGTMMKVR 356 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A K I + + ++PR+ AD R+++Q+ LN+LSNA+ FTP G++ I TS+ Sbjct: 357 AKAKTISLHHTHEPDLPRVWADERALRQVVLNLLSNAVKFTPVNGEVWIKVGPTSDGGQY 416 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + ++DTG G+ E+ ++ FGQ ++ + GTGLGL + +A+V+ + GKF + S P Sbjct: 417 VSIKDTGPGIPEDEIPTVLEAFGQGSHAIKTAEPGTGLGLSIVQALVNMHDGKFSLKSKP 476 Query: 799 AKGTLIEIIFP 809 +GT + + P Sbjct: 477 GEGTEVIVTLP 487 >gi|16126721|ref|NP_421285.1| non-motile and phage-resistance protein [Caulobacter crescentus CB15] gi|221235503|ref|YP_002517940.1| sensory transduction histidine kinase pleC [Caulobacter crescentus NA1000] gi|13638405|sp|P37894|PLEC_CAUCR RecName: Full=Non-motile and phage-resistance protein gi|13424035|gb|AAK24453.1| non-motile and phage-resistance protein [Caulobacter crescentus CB15] gi|220964676|gb|ACL96032.1| sensory transduction histidine kinase pleC [Caulobacter crescentus NA1000] Length = 842 Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 98/236 (41%), Positives = 146/236 (61%), Gaps = 4/236 (1%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE + KS+FLA +SHE+RTPL AI GFSE++ N+ FGPLG+ RY Y+ I SG + Sbjct: 594 AESANKAKSEFLANMSHELRTPLNAINGFSEIMMNEMFGPLGDQRYKGYSQDIHSSGQHL 653 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ND+LD+SKIE+GKMNL FE + L++ +A+ LV+ A + + F +P I Sbjct: 654 LALINDILDMSKIEAGKMNLKFESMHLEDVAEDAVRLVRNRAEAAGLKLDIDFP-QLPEI 712 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYELE 754 AD R+VKQ+ LN+LSNAI FTP G + + + + + + V DTG+G+ +L Sbjct: 713 EADYRAVKQVLLNLLSNAIKFTPRAGSVTVRAEVRRDPFGDLIKVSVTDTGIGIAKEDLA 772 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + KPF Q+ + +GTGLGL L K+++ + G + STP +GT + P+ Sbjct: 773 RLAKPFEQVESQFSKTTQGTGLGLALTKSLITMHDGVLEMHSTPGEGTTVSFTLPV 828 >gi|57238945|ref|YP_180081.1| putative sensor protein [Ehrlichia ruminantium str. Welgevonden] gi|58578878|ref|YP_197090.1| putative sensor protein [Ehrlichia ruminantium str. Welgevonden] gi|57161024|emb|CAH57930.1| putative histidine kinase sensor component of a two-component regulatory system [Ehrlichia ruminantium str. Welgevonden] gi|58417504|emb|CAI26708.1| Putative sensor protein [Ehrlichia ruminantium str. Welgevonden] Length = 477 Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 97/241 (40%), Positives = 152/241 (63%), Gaps = 1/241 (0%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 KL AK++AE+E+ KS FLA VSHE+RTPL +IIGFSE+IK++ GP+ N Y EY N Sbjct: 227 KLKEAKEMAEQENISKSQFLANVSHELRTPLNSIIGFSEMIKSESLGPIENSDYKEYIND 286 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG +L ++ND+LD SK E+ K+ + F L + VS +++ A + ++ + Sbjct: 287 IHSSGVHLLSLINDILDFSKAEANKLVIEFIKFDLGKIVSSCFNMMIPRAEQAKVHLEKV 346 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVILRVRDTGVGM 748 ++ ++AD + +KQ+ +N+LSN+I FTP G + ++ + ++ +I+ + DTG+G+ Sbjct: 347 LPSDKVVMVADPKRIKQVIINLLSNSIKFTPENGTVKLVVRYNLEDKLIIIEITDTGIGI 406 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L K M FGQ+ + + EGTGLGLPL+K +V+ G F I S P GT+I + F Sbjct: 407 AQQDLYKVMSVFGQVDSKHSRKYEGTGLGLPLSKKLVELMNGIFKIKSEPNSGTVITLTF 466 Query: 809 P 809 P Sbjct: 467 P 467 >gi|121602141|ref|YP_988756.1| putative non-motile and phage-resistance protein [Bartonella bacilliformis KC583] gi|120614318|gb|ABM44919.1| putative non-motile and phage-resistance protein [Bartonella bacilliformis KC583] Length = 773 Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 102/242 (42%), Positives = 152/242 (62%), Gaps = 6/242 (2%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L K+ AE + KS+FLA +SHE+RTPL AI+GFS+++ FGPLG+ RY EY I Sbjct: 533 LQAEKERAESANKAKSEFLANISHELRTPLNAILGFSDIMLQSTFGPLGSQRYEEYMRDI 592 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG +L ++ND+LD+SKIE+G+ L + V L+ +SEAI + A EK+I I Sbjct: 593 HNSGTHLLTLINDILDMSKIEAGRFTLDCKNVDLEPIISEAIRTLTPQAQEKKISIT--- 649 Query: 691 ANNIPRILADL--RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 AN P++ A+L R+++QI LN++SNA+ FTPSGG I I N +I +++DTGVG+ Sbjct: 650 ANIAPKLHAELDCRAMRQIFLNLISNAVKFTPSGGSIDICAFQKKN-NLIFKIKDTGVGI 708 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 ++K KPF Q+ N G+GLGL +++++++ + GK I S GT + I Sbjct: 709 PQSAIKKLGKPFEQVENQFTKTHTGSGLGLAISRSLLELHKGKLEIASEEENGTTVTITI 768 Query: 809 PL 810 P+ Sbjct: 769 PI 770 >gi|116251211|ref|YP_767049.1| two component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255859|emb|CAK06940.1| putative two component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 769 Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 103/264 (39%), Positives = 164/264 (62%), Gaps = 13/264 (4%) Query: 557 TMHDISEWKQ----EKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 T+ D+S +Q +K++LS A K+ AE + KS+FLA +SHE+RTPL AI+G Sbjct: 505 TIGDLSASRQTLEIQKSELSTANANYQAEKERAEAANKAKSEFLANMSHELRTPLNAILG 564 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE+++NQ FGPLG+ +Y EYA I SG +L+++ND+LD+SKIE+G + LH E + L Sbjct: 565 FSEILQNQMFGPLGSLKYDEYARDIHDSGKHLLNVINDILDMSKIEAGHVRLHCERIDLV 624 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + E++ + A EK I+I + + ++AD R++KQ+ LN+LSNA+ FT +GG+I Sbjct: 625 PLIEESLRFTAMPAAEKNIVIEQRICSGLT-LMADRRAMKQVLLNLLSNAVKFTDNGGRI 683 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + T + V + + DTG+G+ L K +PF Q+ + G+GLGL +++++ Sbjct: 684 ALRTRRV-DGAVFVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAISRSLT 742 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + G+ I S A GT+I + P Sbjct: 743 SLHGGRMKIRSREAVGTVISLRIP 766 >gi|73666846|ref|YP_302862.1| sensor histidine kinase [Ehrlichia canis str. Jake] gi|72393987|gb|AAZ68264.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Ehrlichia canis str. Jake] Length = 470 Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 98/245 (40%), Positives = 152/245 (62%), Gaps = 1/245 (0%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 KL AK++AE+E+ KS FLA VSHE+RTPL +IIGFSE++K++ G + N Y EY N Sbjct: 220 KLKEAKEVAEQENISKSQFLANVSHELRTPLNSIIGFSEMMKSESMGAIDNVHYKEYIND 279 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG +L ++ND+LD SK+E+ K+ + F L + +S +++ A + ++ + Sbjct: 280 IHNSGVHLLSLINDILDFSKVEANKLVVEFVKFDLSKIISSCFNMMVPRAEQAKVKLEKV 339 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGM 748 +N ++AD + +KQ+ +N+LSNAI FTP G + + + E++I + V D G+G+ Sbjct: 340 LPSNKVIMVADPKRMKQVIINLLSNAIKFTPENGVVKLVVEYNIEEKLIDIEVIDNGIGI 399 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L K M FGQ+ + + EGTGLGLPL+K +V+ G F I S P GT++ + F Sbjct: 400 AQQDLYKVMSIFGQVDSRHARKYEGTGLGLPLSKKLVELMDGVFKIKSEPNLGTIVTLTF 459 Query: 809 PLYDT 813 P DT Sbjct: 460 PYTDT 464 >gi|163759100|ref|ZP_02166186.1| putative sensor histidine kinase transmembrane protein [Hoeflea phototrophica DFL-43] gi|162283504|gb|EDQ33789.1| putative sensor histidine kinase transmembrane protein [Hoeflea phototrophica DFL-43] Length = 795 Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 132/402 (32%), Positives = 213/402 (52%), Gaps = 38/402 (9%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFT 498 R+ +R ME + +L +E+TS+ + +R+ ++ N+ ++ G P DIL P Sbjct: 375 RLQQRTMEAD-QRLFDAIESTSEAFVLWDRDERLVLWNKHYQEIHGLPA-DILAPGTPRP 432 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG----------STKEEKLLSLRIIIKKL 548 V + T V+ L + D QT E + LG T++ L+S+ I L Sbjct: 433 VVEKAATRPVVERRLAVPCARDSAQTFE-VQLGDGRWLQINERKTRDGGLVSVGTDITPL 491 Query: 549 P-------------FSSCYSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDF 588 ++ LT +E K++ +LS + AE S KS+F Sbjct: 492 KRNQERLRDSEKRLMATIGDLTSSQ-AELKRKAAELSELNMDYQVETERAEAASRAKSEF 550 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 LA +SHE+RTPL AIIGFSEV++ + FGPLG+ +Y EYA+ I SG +L ++ND+LD++ Sbjct: 551 LANMSHELRTPLNAIIGFSEVLQARMFGPLGSDKYGEYADDIHNSGIHLLTVINDILDMA 610 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708 KIE+G+M L E V L + E + LV + A +K I + + + + AD R++KQI Sbjct: 611 KIEAGQMQLEREDVDLAPLLKETLRLVAIQAEQKDIRVDQRISAKLS-LNADRRAMKQIL 669 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 LN+LSNA+ FT GG+I++ TS V L + DTG+G+ L + +PF Q+ N Sbjct: 670 LNLLSNAVKFTEPGGKILVRARKTSC-AVTLTIEDTGIGIPKALLNRIGQPFEQVQNQFS 728 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 G+GLGL +++++ + + G + S GT++ + P+ Sbjct: 729 KSTGGSGLGLAISRSLAELHGGAMKVRSIEGMGTIVSVRVPI 770 >gi|110633259|ref|YP_673467.1| multi-sensor signal transduction histidine kinase [Mesorhizobium sp. BNC1] gi|110284243|gb|ABG62302.1| multi-sensor signal transduction histidine kinase [Chelativorans sp. BNC1] Length = 774 Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 104/268 (38%), Positives = 160/268 (59%), Gaps = 19/268 (7%) Query: 557 TMHDIS---EWKQEKN--------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 T+HD+S +QE+ K + AE + KS+FLA +SHE+RTPL AIIG Sbjct: 504 TIHDLSLARRAEQERGQELVELNRKYMRETERAESANRAKSEFLANMSHELRTPLNAIIG 563 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE+++ FGPLG+ RY EY N I SG +L ++ND+LD+SKIE+G+ ++H E + L Sbjct: 564 FSELMQQGLFGPLGSERYQEYVNDIYSSGTYLLGVINDILDMSKIEAGQFSIHRESIDLS 623 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRIL---ADLRSVKQIALNILSNAIHFTPSG 722 E + E + +V L A +K I +++P L AD R+VKQI +N+L NA+ FT G Sbjct: 624 EVIRETMRVVTLQAGKKNI----ELTSDVPASLSLHADRRAVKQILINLLFNAVKFTGQG 679 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 G++ + SN ++L ++DTG G+ L+K +PF Q+ N G+GLGL +++ Sbjct: 680 GRVTLRARVVSN-SLMLTIKDTGCGIPREALKKLGRPFEQVENQYSRSHNGSGLGLAISR 738 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPL 810 ++ + + G I ST GT++ I P+ Sbjct: 739 SLTELHGGALRIRSTEGVGTIVSIRLPV 766 >gi|144273|gb|AAA23052.1| non-motile and phage-resistance protein [Caulobacter crescentus CB15] Length = 842 Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 98/236 (41%), Positives = 146/236 (61%), Gaps = 4/236 (1%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE + KS+FLA +SHE+RTPL AI GFSE++ N+ FGPLG+ RY Y+ I SG + Sbjct: 594 AESANKAKSEFLANMSHELRTPLNAINGFSEIMMNEMFGPLGDQRYKGYSQDIHSSGQHL 653 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ND+LD+SKIE+GKMNL FE + L++ +A+ LV+ A + + F +P I Sbjct: 654 LALINDILDMSKIEAGKMNLKFESMHLEDVAEDAVRLVRNRAEAAGLKLDIDFP-QLPEI 712 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYELE 754 AD R+VKQ+ LN+LSNAI FTP G + + + + + + V DTG+G+ +L Sbjct: 713 EADYRAVKQVLLNLLSNAIKFTPRAGSVTVRVEVRRDPFGDLIKVSVTDTGIGIAKEDLA 772 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + KPF Q+ + +GTGLGL L K+++ + G + STP +GT + P+ Sbjct: 773 RLAKPFEQVESQFSKTTQGTGLGLALTKSLITMHDGVLEMHSTPGEGTTVSFTLPV 828 >gi|227822277|ref|YP_002826248.1| two component sensor kinase [Sinorhizobium fredii NGR234] gi|227341277|gb|ACP25495.1| two component sensor kinase [Sinorhizobium fredii NGR234] Length = 511 Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 102/277 (36%), Positives = 167/277 (60%), Gaps = 5/277 (1%) Query: 538 LLSLRIIIKKLPFSSCYSLTMHD-----ISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 L+ L + +++ ++ + L+M I+E + K+ A++ AE+ + KS FLA + Sbjct: 210 LVFLAFMTERMNKANVHILSMQSEKDDLIAELEVAKSMSDEARRRAEEANLAKSRFLASM 269 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHE+RTPL AI+GFSEV+ + GPL NP Y EY I RSG +L+++N++LD+S+IE+ Sbjct: 270 SHELRTPLNAILGFSEVMSTEVLGPLNNPTYKEYTVDIHRSGEHLLNLINEILDLSRIEA 329 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 G+ L+ E V+L E + I +VQL A K I I F +P + D ++++Q+ALN+L Sbjct: 330 GRYELNEEAVNLVEIAEDCIGMVQLRARGKNITIEPQFEQAMPSVWIDEKAMRQVALNLL 389 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 SNA+ FTP+GG+I + T+ + ++D G G+ E+ + FGQ + + + Sbjct: 390 SNAVKFTPAGGEITVKVGWTAGGGQYISIKDNGPGIPEEEIPIVLSAFGQGSIAIKSAEQ 449 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGLP+ +A++ + G+F + S +GT I P Sbjct: 450 GTGLGLPIVQAILAKHNGQFILRSKLREGTEAIAILP 486 >gi|319403897|emb|CBI77483.1| two-component sensor histidine kinase [Bartonella rochalimae ATCC BAA-1498] Length = 769 Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 101/243 (41%), Positives = 152/243 (62%), Gaps = 8/243 (3%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L K+ AE + KS+FLA +SHE+RTPL AI+GFSE++ FGPLG+ RY EY + I Sbjct: 529 LQEEKERAESANKAKSEFLANISHELRTPLNAILGFSEIMLQSTFGPLGSQRYKEYMHDI 588 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG +L ++ND+LD+SKIE+G+ L + ++L+ +SE I + A K+I S Sbjct: 589 HNSGTHLLTLINDILDMSKIEAGRFTLDRKNINLEPIISETIRTLTPQAQAKKI----SL 644 Query: 691 ANNIPRIL---ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 NI + L D R++KQI LN++SNA+ FTPSGG I I +N +I ++DTGVG Sbjct: 645 TTNIEQKLHADVDCRAMKQIFLNLISNAVKFTPSGGSIDIRAFQKNN-NLIFSIKDTGVG 703 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + ++K +PF Q+ N G+GLGL +++++++ + GK I S KGT++ II Sbjct: 704 IPQEAIKKLGQPFEQVENQFTKTHPGSGLGLAISRSLLELHKGKLEITSKEGKGTIVTII 763 Query: 808 FPL 810 P+ Sbjct: 764 MPI 766 >gi|49475278|ref|YP_033319.1| two-component sensor histidine kinase [Bartonella henselae str. Houston-1] gi|49238084|emb|CAF27291.1| Two-component sensor histidine kinase [Bartonella henselae str. Houston-1] Length = 773 Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 100/242 (41%), Positives = 153/242 (63%), Gaps = 6/242 (2%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L K+ AE + KS+FLA +SHE+RTPL AI+GFS+++ FGPLG+ RY EY + I Sbjct: 533 LKAEKERAESANKAKSEFLANMSHELRTPLNAILGFSDIMLQSTFGPLGSQRYQEYMHDI 592 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SGN +L ++ND+LD+SKIE+G+ L + + L+ +SEA+ + A EK I + T+ Sbjct: 593 YNSGNHLLTLINDILDMSKIEAGRFTLDRKNIDLEPIISEAVRTLTPQAQEKNISVSTNI 652 Query: 691 ANNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 A P + A D R++KQI LN++SNA+ FTPSGG I + N ++ R++DTGVG+ Sbjct: 653 A---PELHAEVDGRAMKQIFLNLISNAVKFTPSGGSINVCAFKKKN-NLVCRIKDTGVGI 708 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 ++K +PF Q+ N G+GLGL +++++++ + GK I S KGT + I Sbjct: 709 PQSAIKKLGQPFEQVENQLTKTHTGSGLGLAISRSLLELHKGKLEIISKEMKGTTVTITM 768 Query: 809 PL 810 P+ Sbjct: 769 PI 770 >gi|304321187|ref|YP_003854830.1| non-motile and phage-resistance protein [Parvularcula bermudensis HTCC2503] gi|303300089|gb|ADM09688.1| non-motile and phage-resistance protein [Parvularcula bermudensis HTCC2503] Length = 754 Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 99/232 (42%), Positives = 151/232 (65%), Gaps = 2/232 (0%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A++ + KS+FLA +SHE+RTPL AI GFSE++K + FGPLG+ +Y+EY I SG+ + Sbjct: 485 AQEANRAKSEFLANMSHELRTPLNAINGFSELMKEELFGPLGHKKYVEYIKDIHASGSHL 544 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L++++D+LD+SK+E+GK++L V LD + E++ LV++ E + R S ++IP + Sbjct: 545 LNLIDDILDLSKLEAGKLDLDLCQVDLDRLLKESLRLVEMQMREASLEFR-SLTDHIPSV 603 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 AD R+VKQ+ LN+LSNA FTP GG + ++T IL + DTG+GMT +LEK Sbjct: 604 WADPRAVKQVILNVLSNAQKFTPQGGAVTVTTLVDLTTVTIL-IADTGIGMTPEQLEKLG 662 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +PF + GTGLGL L+K++++A G + S P +GT+ I P Sbjct: 663 QPFELADDHFSRASRGTGLGLALSKSLMEAQNGLLAVTSEPRRGTVAAICLP 714 >gi|217977515|ref|YP_002361662.1| integral membrane sensor signal transduction histidine kinase [Methylocella silvestris BL2] gi|217502891|gb|ACK50300.1| integral membrane sensor signal transduction histidine kinase [Methylocella silvestris BL2] Length = 518 Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 109/289 (37%), Positives = 172/289 (59%), Gaps = 8/289 (2%) Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD-----ISEWKQEKNKLSHAKKIAEK 580 + I LG + L ++ +KL S+ +L+ I+E +Q K A++ AE+ Sbjct: 201 QMIVLGFGAQ---LCFLMLARKLYASALEALSFQAEKDDLIAELEQSKANSDLARRRAEE 257 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 + KS FLA +SHE+RTPL AI+GFSEV+K + FG Y EY+N I SG+ +L + Sbjct: 258 ANLAKSHFLATMSHELRTPLNAILGFSEVMKGELFGAHIVASYKEYSNDIHASGHHLLML 317 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700 +N++LD+S+IE+G++ L E V+LD V + L+ L A ++ + I + ++PRI AD Sbjct: 318 INEILDLSRIEAGRLELKEEAVALDHIVEDCHHLLALRAKKRGVTITEAIEADLPRIRAD 377 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 R+V+Q+ LN+LSNA+ FTP GG++ I T+ L VRD+G G+ E+ M F Sbjct: 378 ERAVRQMTLNLLSNAVKFTPPGGRVRIRIGWTAAGGQYLAVRDSGPGIPEEEIPIVMSSF 437 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 G+ +++ EG+GLGLP+ K +V+ + G F + S +G +IFP Sbjct: 438 GRGALARKNAEEGSGLGLPIVKGLVELHEGTFILKSNVGEGAEAIVIFP 486 >gi|304393603|ref|ZP_07375531.1| PAS/PAC sensor signal transduction histidine kinase [Ahrensia sp. R2A130] gi|303294610|gb|EFL88982.1| PAS/PAC sensor signal transduction histidine kinase [Ahrensia sp. R2A130] Length = 814 Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 94/241 (39%), Positives = 152/241 (63%), Gaps = 2/241 (0%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 +K A++ + KS FLA +SHE+RTPL AIIGFS++++ FGPLGN +Y EYAN I SG Sbjct: 553 RKQADEANKSKSQFLANMSHELRTPLNAIIGFSDIMREGMFGPLGNEKYTEYANDIRSSG 612 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L ++ND+LD+SKIE+G+M ++ E +++ + + E + ++ A++ + + T + Sbjct: 613 GFLLGVINDVLDMSKIEAGRMQIYPEELAVSDLLQETLRIIAAQADDGELQVTTEIETGL 672 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 I+AD R+VKQ+ +N+LSNA+ FTP GG I +S ++ V + + D+G+G++ LE Sbjct: 673 D-IIADRRAVKQVLINLLSNAVKFTPKGGSIQVSARRL-DDNVEMEILDSGIGISQDALE 730 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + PF Q + G+GLGL +AK++ + + G I S GT + + PL TS Sbjct: 731 RIGLPFEQAASELTRDHVGSGLGLAIAKSLAELHGGSVDISSIEGIGTTVLVRLPLDCTS 790 Query: 815 H 815 H Sbjct: 791 H 791 >gi|13476392|ref|NP_107962.1| two-component, sensor histidine kinase [Mesorhizobium loti MAFF303099] gi|14027153|dbj|BAB54107.1| two-component, sensor histidine kinase [Mesorhizobium loti MAFF303099] Length = 356 Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 95/229 (41%), Positives = 144/229 (62%), Gaps = 2/229 (0%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE + KS+FLA +SHE+RTPL AIIGFSE+++ FGPLG+ RY EYA I+ SG + Sbjct: 115 AEAANRAKSEFLANMSHELRTPLNAIIGFSELMEQGLFGPLGSARYEEYATDINSSGKYL 174 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ND+LD+SKIE+G+ +L E + L +SE + +V L A +K I + T A+ + + Sbjct: 175 LGVINDILDMSKIEAGQFSLDQEQIDLGPLISETVRVVSLQAAQKAITVETRIADALS-L 233 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 AD R++KQI +N+LSNA+ FT GG I + +TS ++L + D G G+ L K Sbjct: 234 FADRRAIKQIVINLLSNAVKFTGQGGHISVRARNTSG-ALVLTIEDNGCGIPKEALGKLG 292 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 +PF Q+ N G+GLGL +++++ + G I ST GT++ + Sbjct: 293 RPFEQVQNQFSKNHAGSGLGLAISRSLAELQGGALKIRSTEGVGTIVSV 341 >gi|58616936|ref|YP_196135.1| putative sensor protein [Ehrlichia ruminantium str. Gardel] gi|58416548|emb|CAI27661.1| Putative sensor protein [Ehrlichia ruminantium str. Gardel] Length = 477 Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 96/241 (39%), Positives = 152/241 (63%), Gaps = 1/241 (0%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 KL AK++AE+E+ KS FLA VSHE+RTPL +IIGFSE+IK++ GP+ N Y EY N Sbjct: 227 KLKEAKEMAEQENISKSQFLANVSHELRTPLNSIIGFSEMIKSESLGPIENSDYKEYIND 286 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG +L ++ND+LD SK E+ K+ + F L + VS +++ A + ++ + Sbjct: 287 IHSSGVHLLSLINDILDFSKAEANKLVIEFIKFDLGKIVSSCFNMMIPRAEQAKVHLEKV 346 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVILRVRDTGVGM 748 ++ ++AD + +KQ+ +N+LSN++ FTP G + ++ + ++ +I+ + DTG+G+ Sbjct: 347 LPSDKVVMVADPKRIKQVIINLLSNSMKFTPENGTVKLVVRYNLEDKLIIIEITDTGIGI 406 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L K M FGQ+ + + EGTGLGLPL+K +V+ G F I S P GT+I + F Sbjct: 407 AQQDLYKVMSVFGQVDSKHSRKYEGTGLGLPLSKKLVELMNGIFKIKSEPNSGTVITLTF 466 Query: 809 P 809 P Sbjct: 467 P 467 >gi|299133592|ref|ZP_07026786.1| integral membrane sensor signal transduction histidine kinase [Afipia sp. 1NLS2] gi|298591428|gb|EFI51629.1| integral membrane sensor signal transduction histidine kinase [Afipia sp. 1NLS2] Length = 525 Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 102/249 (40%), Positives = 155/249 (62%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I E +Q K A+ AE + KS FLA++SHE+RTPL AI+GFSEV+K++ FG Sbjct: 234 IGELEQAKAISDEARHRAEAANVSKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGSHAV 293 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 Y +Y+ I SG +L+++N++LD+S+IE+G+ L+ EP SL V++ L++L A+ Sbjct: 294 AVYKDYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEPFSLVHVVADCHHLLKLRAS 353 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + I I F + +P++ D R+ +QI LN+LSNAI FTP GG+I + + T++ L Sbjct: 354 SRGITIHEVFEDEMPKLWGDERATRQIVLNLLSNAIKFTPQGGEIWLKSGWTASGGQYLS 413 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+DTG G+ E+ + FGQ NS + +G GLGLP+AK ++D + G F + S Sbjct: 414 VKDTGSGIPEDEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKNLIDMHGGTFTLKSKLRI 473 Query: 801 GTLIEIIFP 809 GT + I FP Sbjct: 474 GTEVIITFP 482 >gi|144900521|emb|CAM77385.1| PAS [Magnetospirillum gryphiswaldense MSR-1] Length = 815 Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 142/493 (28%), Positives = 248/493 (50%), Gaps = 37/493 (7%) Query: 325 TVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 V++ P+ + + G + Y NP+F +T Y D++ L +P++ ++ P Sbjct: 339 AVEQSPVSVLISDAQGLIEYINPAFSAMTGYHR-DEV--------LGHSPRMLRSDQTPP 389 Query: 384 VMLYRSDRTCIAASA--RLHTIQWNRENSL---AMTFIPFEKANQFPENMPQNGIEPEDV 438 ++ I+A R + ++ S+ +MT P + + ++ EDV Sbjct: 390 -EVFADLWASISAGQEWRGEIVNQRKDGSVYWESMTVAPVKDGDGKVDSFIAF---KEDV 445 Query: 439 -DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + R + +E+E L I +T D IA+++ +G N A+ FG PV + Sbjct: 446 TEIRSLRLALELEHANLRRIFASTKDLIALVSTDGRFEYANPALVDTFG-PVMGV----- 499 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS-L 556 ++++ I +L T + S K I P + L Sbjct: 500 ---------RTIDYFQPAIANLGDDNTATRGEWVSDLNGKTYEFSITPVDTPHGEMSALL 550 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 +HDI+ KQ + ++ A++ AE + K++FLA +SHE+RTPL AIIGFSE+I+N+ G Sbjct: 551 ALHDITTRKQAELAMAEAREAAELSNRAKTEFLATMSHELRTPLNAIIGFSEIIENELLG 610 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P+ +Y +YA+ I+ SG +L ++ND+LD++++E G+ L + + + + ++ LV Sbjct: 611 PVETKQYRDYAHDINESGRHLLTLINDILDVARLEVGRFALMESEMDVGQTIRASVQLVG 670 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A + I + +P ++ D R +KQ NILSNA+ FT + G++ + T T Sbjct: 671 ERAKAAGLRIGEQIPDGLPWLMGDERRIKQTIANILSNAVKFTSADGRVTV-TAKTDENG 729 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + V DTG+G+ ++ K M PFGQ +S R +G GLGLPLA+ +D + G I S Sbjct: 730 LDIVVSDTGIGIHADDMTKIMAPFGQAESSLSRRFDGAGLGLPLARRFMDMHGGTLSISS 789 Query: 797 TPAKGTLIEIIFP 809 TP +GT++ + FP Sbjct: 790 TPGQGTVVNLHFP 802 >gi|327193951|gb|EGE60826.1| putative two-component sensor histidine kinase protein [Rhizobium etli CNPAF512] Length = 769 Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 103/264 (39%), Positives = 162/264 (61%), Gaps = 13/264 (4%) Query: 557 TMHDISEWKQ----EKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 T+ D+S +Q +K +LS A K+ AE + KS+FLA +SHE+RTPL AI+G Sbjct: 505 TIGDLSASRQTLELQKAELSTANANYQAEKERAEAANKAKSEFLANMSHELRTPLNAILG 564 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE+++NQ FGPLG+ +Y EYA I SG +L+++ND+LD+SKIE+G + LH E + L Sbjct: 565 FSEILQNQMFGPLGSLKYDEYARDIHDSGKHLLNVINDILDMSKIEAGHLRLHRERIDLV 624 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + E++ + A EK I+I + + ++AD R++KQ+ LN+LSNA+ FT +GG+I Sbjct: 625 PLIEESLRFTAIPAAEKNIVIEQRICSGMA-LMADRRAMKQVLLNLLSNAVKFTDNGGRI 683 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + T V + + DTG+G+ L K +PF Q+ + G+GLGL +++++ Sbjct: 684 AVRTRRVDG-AVTVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAISRSLT 742 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + G+ I S A GT+I + P Sbjct: 743 ALHGGRMKIRSREAVGTVISLRIP 766 >gi|92117022|ref|YP_576751.1| periplasmic sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] gi|91799916|gb|ABE62291.1| signal transduction histidine kinase [Nitrobacter hamburgensis X14] Length = 536 Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 101/249 (40%), Positives = 154/249 (61%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I E +Q K A+ AE + KS FLA++SHE+RTPL AI+GFSEV+K++ FG Sbjct: 240 IGELEQAKAISDEARHRAESANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGEHAV 299 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 Y Y+ I SG +L+++N++LD+S+IE+G+ L+ E VSL V++ L++L A+ Sbjct: 300 AVYKSYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAVSLVHVVADCHHLLKLRAS 359 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + I I F + +PRI D R+ +QI LN+LSN+I FTP GG+I + T++ L Sbjct: 360 SRGITIHEVFEHGMPRIWGDERATRQIVLNLLSNSIKFTPQGGEIWLKVGWTASGGQYLS 419 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+D+G G+ E+ + FGQ NS + +G GLGLP+AK+++D + G F + S Sbjct: 420 VKDSGSGIAEDEIPIVLASFGQGTNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLRSKLRV 479 Query: 801 GTLIEIIFP 809 GT + + FP Sbjct: 480 GTEVIVTFP 488 >gi|114797754|ref|YP_761588.1| non-motile and phage-resistance protein [Hyphomonas neptunium ATCC 15444] gi|114737928|gb|ABI76053.1| non-motile and phage-resistance protein [Hyphomonas neptunium ATCC 15444] Length = 821 Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 96/242 (39%), Positives = 149/242 (61%), Gaps = 1/242 (0%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 K S K+ AE+ + KS FLA +SHE+RTPL A+IGFSE++ N+ GPLG+P Y EYA Sbjct: 566 RKYSEEKEKAERAALAKSAFLANMSHELRTPLNAVIGFSEIMTNELAGPLGDPSYKEYAK 625 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I SG +LD++ND+LD++KIE+GKM + +P+ + V A+ +++ A EK I + Sbjct: 626 DILMSGQHLLDMINDILDMAKIEAGKMTISPQPIDPIDPVDAAMRMIRRKAEEKAIDLVL 685 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 +N+P I AD R+++Q+ LN+LSNAI FT G I + ++ V DTG+G+ Sbjct: 686 EAEDNLPDIDADHRAIRQMMLNLLSNAIKFTDRSGTITVRVEQRGT-DIYFGVTDTGIGI 744 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L + +PF Q+ ++ EGTGLGL L K+ + + G+ + S +GT + + Sbjct: 745 PAEDLPRLAQPFEQVAKTKDRNHEGTGLGLSLTKSFAEMHGGRMLLSSIYGEGTTVAFVL 804 Query: 809 PL 810 P+ Sbjct: 805 PI 806 >gi|170748167|ref|YP_001754427.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170654689|gb|ACB23744.1| integral membrane sensor signal transduction histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 511 Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 101/261 (38%), Positives = 158/261 (60%), Gaps = 3/261 (1%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E +Q K A++ AE+ + KS FLA +SHE+RTPL AI+GFSEV+KN+ FG P Sbjct: 235 GELEQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMKNEVFGTHTAP 294 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 Y EY++ I SG +L+++N++LD+S+IE+G+ L+ EPV L V E ++ L A Sbjct: 295 SYREYSHDIHDSGMHLLNLINEILDLSRIEAGRYELNEEPVQLAHVVEECRHMMGLRAKA 354 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 K ++PR+ AD R+++QI LN+LSNA+ FTP GG+I + T++ + V Sbjct: 355 KNQTFHDLVDGSLPRLWADERALRQIVLNLLSNAVKFTPPGGEIWLKVGWTASGGQYVSV 414 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +D+G G+ EL + FG+ + + +G+GLGLP+ K +V+ + G+F + S P +G Sbjct: 415 KDSGPGIPEDELGTVLSSFGRGSLAIKTAEQGSGLGLPIVKGLVELHGGQFQLSSKPREG 474 Query: 802 TLIEIIFP---LYDTSHPHDC 819 T + + P + DT P D Sbjct: 475 TEVVVTLPASRVMDTLPPVDV 495 >gi|85715377|ref|ZP_01046359.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] gi|85697798|gb|EAQ35673.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] Length = 788 Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 100/251 (39%), Positives = 151/251 (60%), Gaps = 2/251 (0%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 K + K AE + KS FLA +SHE+RTPL AIIGFSE++ N FG LG+ +Y EY Sbjct: 521 QKYADQKNRAEDANRAKSKFLANMSHELRTPLNAIIGFSEIMSNGMFGTLGSKKYSEYCR 580 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I SG +L+++ND+LD+SKIE+G+MNL E L + E++ +V ++K + Sbjct: 581 DILTSGQYLLEVINDVLDMSKIEAGRMNLDMEAFDLTGVLDESLRVVSGRTSDKSLTFDL 640 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + I I+AD R+VKQI +N+LSNAI FTP GG+I+ + N + L + DTG+G+ Sbjct: 641 RNNDGIS-IVADRRAVKQILVNLLSNAIKFTPDGGRIMARSKIFEN-FITLTIADTGIGI 698 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 ++ L K KPF Q+ + G+GLGL +AK++V+ + G + S P GT++ + Sbjct: 699 ASHALRKLGKPFEQVESQLTKTHAGSGLGLAIAKSLVNLHNGSMKLRSKPGVGTVVRVTL 758 Query: 809 PLYDTSHPHDC 819 P + + C Sbjct: 759 PRHCQARTAIC 769 >gi|312113023|ref|YP_004010619.1| integral membrane sensor signal transduction histidine kinase [Rhodomicrobium vannielii ATCC 17100] gi|311218152|gb|ADP69520.1| integral membrane sensor signal transduction histidine kinase [Rhodomicrobium vannielii ATCC 17100] Length = 508 Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 96/249 (38%), Positives = 153/249 (61%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I E ++ K A+ AE + KS FLA +SHE+RTPL AI+GFSE+IK++ GP+ N Sbjct: 225 IEELERAKAASDEARVRAEAANVAKSKFLANMSHELRTPLNAIMGFSEMIKDEVLGPIDN 284 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 Y YA I SG+ +L ++N++LD+S+IE+G+ L +P+ + E++ L+++ A+ Sbjct: 285 ENYRSYAADIHESGSHLLKLINEILDLSRIEAGRYELTEKPIDVAATALESLRLMRIDAH 344 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 +K + + T F ++PRI+AD R+++QI LN+LSNAI FTP G I + + E +L Sbjct: 345 QKNLRVVTDFRPDMPRIMADERALRQICLNLLSNAIKFTPDSGLIAVRAGILPSGEAVLS 404 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 VRD G G+ E+ + ++ FGQ + + GTGLGLP+ + + + G+F + S Sbjct: 405 VRDNGPGIPEEEISQVLRAFGQGSLALKTGESGTGLGLPIVSGLAELHGGRFELRSKLGV 464 Query: 801 GTLIEIIFP 809 GT +I P Sbjct: 465 GTEASLILP 473 >gi|319408254|emb|CBI81907.1| two-component sensor histidine kinase [Bartonella schoenbuchensis R1] Length = 772 Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 97/242 (40%), Positives = 150/242 (61%), Gaps = 6/242 (2%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L K+ AE + KS+FLA +SHE+RTPL AI+GFS+++ FGPLG+ RY EY I Sbjct: 532 LQAEKERAESANKAKSEFLANISHELRTPLNAILGFSDIMLQSTFGPLGSQRYKEYMRDI 591 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG +L ++ND+LD+SKIE+G+ L + + L +SEA+ + A EK++ + + Sbjct: 592 HNSGTHLLTLINDILDMSKIEAGRFTLDCKNIDLGPIISEAVRTLTPQAQEKKVSVTENI 651 Query: 691 ANNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 A P++ A D R+++QI LN++SNA+ FTPSGG I + N +I +++DTGVG+ Sbjct: 652 A---PKLHAEVDCRAIRQIFLNLISNAVKFTPSGGNIDVCAFQKEN-NLIFKIKDTGVGI 707 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 ++K +PF Q+ N G+GLGL +++++V + GK I S KGT + I Sbjct: 708 PQAAIKKLGQPFEQVENQFTKTHTGSGLGLAISRSLVKLHKGKLEITSKEEKGTTVTITM 767 Query: 809 PL 810 P+ Sbjct: 768 PI 769 >gi|209548532|ref|YP_002280449.1| multi-sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534288|gb|ACI54223.1| multi-sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 769 Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 103/264 (39%), Positives = 165/264 (62%), Gaps = 13/264 (4%) Query: 557 TMHDISEWKQ----EKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 T+ D+S +Q +K++LS A K+ AE + KS+FLA +SHE+RTPL AI+G Sbjct: 505 TIGDLSASRQTLEIQKSELSTANANYQAEKERAEAANKAKSEFLANMSHELRTPLNAILG 564 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE+++NQ FGPLG+ +Y EYA I SG +L+++ND+LD+SKIE+G + LH E + L Sbjct: 565 FSEILQNQMFGPLGSLKYDEYARDIHDSGKHLLNVINDILDMSKIEAGHLRLHCERIDLV 624 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + E++ + A EK I+I ++ + + AD R++KQ+ LN+LSNA+ FT +GG+I Sbjct: 625 PLIEESLRFTAIPAAEKNIVIDQRISSGLT-LTADRRAMKQVLLNLLSNAVKFTDNGGRI 683 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + T + V++ + DTG+G+ L K +PF Q+ + G+GLGL +++++ Sbjct: 684 AVRTRRI-DGAVLVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAISRSLT 742 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + G+ I S A GT+I + P Sbjct: 743 ALHGGRMKIRSREAVGTVISLRIP 766 >gi|319784548|ref|YP_004144024.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170436|gb|ADV13974.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 773 Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 95/233 (40%), Positives = 147/233 (63%), Gaps = 2/233 (0%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE + KS+FLA +SHE+RTPL AIIGFSE+++ FGPLG+ RY EYA I+ SG + Sbjct: 532 AEAANRAKSEFLANMSHELRTPLNAIIGFSELMEQGLFGPLGSERYEEYATDINSSGKYL 591 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ND+LD+SKIE+G+ +L E + L +SE + +V L A +K I + T A+ + + Sbjct: 592 LGVINDILDMSKIEAGQFSLDREEIDLGPLISETVRVVSLQAAQKAISVETRIADALT-L 650 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 +AD R++KQI +N+LSNA+ FT GG I + +TS ++L + D G G+ L K Sbjct: 651 VADRRAIKQIVINLLSNAVKFTGHGGHISVRARNTSG-ALVLTIEDNGCGIPKEALGKLG 709 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +PF Q+ N G+GLGL +++++ + G I S+ GT++ + P+ Sbjct: 710 RPFEQVQNQFSKSHAGSGLGLAISRSLAELQGGALKIRSSEGVGTIVSVRIPV 762 >gi|85715579|ref|ZP_01046559.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] gi|85697518|gb|EAQ35395.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] Length = 611 Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 101/260 (38%), Positives = 156/260 (60%), Gaps = 1/260 (0%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M ++++ KQ+++ L A+ AE+ + K+ FLA +SHE+RTPL AIIGFSE+I + Sbjct: 322 VMREVTDRKQQEHALDLARTAAERADAAKTRFLATMSHELRTPLNAIIGFSEMIVQEATL 381 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL R EYA I+ SG +L +VN +LD+SK+ESG + EP + E + +L+ Sbjct: 382 PLDATRRKEYAQLINDSGQHLLSVVNSILDMSKMESGSFEILPEPFAPREVLLNGCNLLA 441 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 L A + I + T N+P+++ D R+ +QI LN++SNAI FT GG++ IS Sbjct: 442 LKARDNGIELVTRVPENLPQMIGDPRAFRQIVLNLVSNAIKFTERGGRVTIS-ARVEGAR 500 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 ++LRV D GVG+ +L++ PF Q + Q R EGTGLGL + K +V+ + G+ + S Sbjct: 501 MVLRVMDDGVGIAQEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKNLVELHRGEIDVQS 560 Query: 797 TPAKGTLIEIIFPLYDTSHP 816 +GT + ++ PL T P Sbjct: 561 KVEEGTTVTVMLPLTLTLVP 580 >gi|307945357|ref|ZP_07660693.1| two-component sensor histidine kinase [Roseibium sp. TrichSKD4] gi|307771230|gb|EFO30455.1| two-component sensor histidine kinase [Roseibium sp. TrichSKD4] Length = 512 Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 96/251 (38%), Positives = 156/251 (62%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H ISE + +++ AE + KS FLA +SHE+RTPL AI+GFSEV+K++ GP+ Sbjct: 241 HLISELETANALSDESRRRAEAANMAKSRFLATMSHELRTPLNAILGFSEVMKDEVLGPM 300 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N +Y YA I SG +L+++N++LD+S+IE+G+ L E +S+ E V E ++++Q+ Sbjct: 301 QNEQYKSYAADIHGSGQHLLNLINEILDLSRIEAGRHELQEEEISVTEIVEECLNMMQIR 360 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A+++ I + +P++ AD R+V+Q+ LN+LSNA+ FTP GG + I+ TS Sbjct: 361 ADDRNITLHNHLEKEMPKVWADERAVRQVVLNLLSNAVKFTPIGGDVRITVGWTSGGGQY 420 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V+D G G+ E+ M+ FGQ + + +GTGLGL + +A+V+ + GKF + S Sbjct: 421 VSVKDNGPGIPEDEIPVVMEAFGQGSMAIKSAEQGTGLGLSIVQALVNMHGGKFTLRSKM 480 Query: 799 AKGTLIEIIFP 809 +GT + P Sbjct: 481 HEGTEALMTLP 491 >gi|283782276|ref|YP_003373031.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068] gi|283440729|gb|ADB19171.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068] Length = 675 Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 126/409 (30%), Positives = 208/409 (50%), Gaps = 40/409 (9%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVM-----QLCSILEATSDGIAIINREGIIL 475 N EN Q + E I++R+ E++ + ++ + +DGI +N + Sbjct: 112 GNTIEENPFQTALAAE-----IDERRRAEELLWNSQARWRAVFDNAADGIITLNESLQVE 166 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFL--------EQNTPSVMNHYLTEILSLDLRQTLEK 527 + N A +LFGY E I+ ++ + P T D L Sbjct: 167 TYNTAAQRLFGYSCEQIVGLQISLLMPGVELDSSNAAAPQAGRRIETLCRRSDGSMFLAD 226 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 ++LG+ + K S Y + DI+ ++++ +L AK+ AE S K + Sbjct: 227 VSLGTVPQSK-------------SHGYIAIIRDITRQRRDQQELEEAKRAAESASHAKDE 273 Query: 588 FLARVSHEIRTPLTAIIGFSE-VIKNQRFGPLGN--PRYIEYANYIDRSGNLVLDIVNDL 644 FLA +SHEIRTP+TAI+GFS+ +I +QR L N P + E A + R+G +L ++ND+ Sbjct: 274 FLANMSHEIRTPITAILGFSDLLIHDQR---LQNEFPNWFESAQTVYRNGEHLLSLINDV 330 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703 LD+SKIE+G++ + S E V + L+ L A+EK + + SF +IP + D Sbjct: 331 LDLSKIEAGRLLIESIRCSPLEIVRDVCQLMSLKASEKDLTLDVSFRTDIPVTAVTDPTR 390 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR--DTGVGMTNYELEKAMKPFG 761 +KQ+ +N++ NA+ FTP G I H+S +L V DTG+GMT+ ++++ +PF Sbjct: 391 IKQVLINLVGNAVKFTPRGSVQITVDIHSSGHATMLAVEVTDTGIGMTSAQIDRLFQPFT 450 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 Q S R GTGLGL ++K +V+A G+ + S +G+ ++ PL Sbjct: 451 QADASTTRRFGGTGLGLVISKRIVEALGGQVSVVSQSGEGSTFRVLLPL 499 >gi|86356937|ref|YP_468829.1| two-component sensor histidine kinase protein [Rhizobium etli CFN 42] gi|86281039|gb|ABC90102.1| probable two-component sensor histidine kinase protein [Rhizobium etli CFN 42] Length = 767 Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 103/264 (39%), Positives = 161/264 (60%), Gaps = 13/264 (4%) Query: 557 TMHDISEWKQ----EKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 T+ D+S +Q +K +LS A K+ AE + KS+FLA +SHE+RTPL AI+G Sbjct: 503 TIGDLSASRQTLELQKAELSTANANYQAEKERAEAANKAKSEFLANMSHELRTPLNAILG 562 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE+++NQ FGPLG+ +Y EYA I SG +L+++ND+LD+SKIE+G + LH E + L Sbjct: 563 FSEILQNQMFGPLGSLKYDEYARDIHDSGKHLLNVINDILDMSKIEAGHLKLHRERIDLV 622 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + E++ + A EK I+I ++ + + AD R++KQ+ LN+LSNA+ FT GG+I Sbjct: 623 PLIEESLRFTAIPAAEKNIVIEQRISSGLT-LTADRRAMKQVLLNLLSNAVKFTDDGGRI 681 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + T V + + DTG+G+ L K +PF Q+ + G+GLGL +++++ Sbjct: 682 AVRTRRVDG-AVFVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAISRSLT 740 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + G+ I S A GT+I + P Sbjct: 741 SLHGGRMKIRSREAVGTVISLRIP 764 >gi|190891008|ref|YP_001977550.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652] gi|190696287|gb|ACE90372.1| probable two-component sensor histidine kinase protein [Rhizobium etli CIAT 652] Length = 761 Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 103/264 (39%), Positives = 164/264 (62%), Gaps = 13/264 (4%) Query: 557 TMHDISEWKQ----EKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 T+ D+S +Q +K++LS A K+ AE + KS+FLA +SHE+RTPL AI+G Sbjct: 497 TIGDLSASRQTLEIQKSELSTANANYQAEKERAEAANKAKSEFLANMSHELRTPLNAILG 556 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE+++NQ FGPLG+ +Y EYA I SG +L++++D+LD+SKIE+G + LH E + L Sbjct: 557 FSEILQNQMFGPLGSAKYDEYARDIHDSGKHLLNVISDILDMSKIEAGHLKLHRERIDLV 616 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + E++ + A EK ILI ++ + + AD R++KQ+ LN+LSNA+ FT +GG+I Sbjct: 617 PLIEESLRFTAIPAAEKNILIDQRISSGLT-LTADRRAMKQVLLNLLSNAVKFTDNGGRI 675 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + T + V + + DTG+G+ L K +PF Q+ + G+GLGL +++++ Sbjct: 676 AVRTRRV-DGAVTVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAISRSLT 734 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + G+ I S A GT+I + P Sbjct: 735 ALHGGRMKIRSREAVGTVISLRIP 758 >gi|118587761|ref|ZP_01545171.1| PAS domain protein [Stappia aggregata IAM 12614] gi|118439383|gb|EAV46014.1| PAS domain protein [Stappia aggregata IAM 12614] Length = 784 Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 94/244 (38%), Positives = 149/244 (61%), Gaps = 2/244 (0%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +K K AE + KS+FLA +SHE+RTPL AIIGFS+++ + FGP+G RY +Y Sbjct: 539 DKYQEEKTRAEAANKAKSEFLANISHELRTPLNAIIGFSDIMTQEMFGPVGTDRYSDYCK 598 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I SG +L+++ND+LD+SKIE+G+M + E V+ E+ +A +V A EK I + T Sbjct: 599 DIYSSGTYLLNVINDILDMSKIEAGRMTIETETVNASESAEDASRIVTGAATEKNITVTT 658 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 N+ + AD R++KQI LN+L+NA+ FTP G + + +++ V DTG+G+ Sbjct: 659 DVVENVS-VHADKRALKQILLNLLANAVKFTPDNGTVTLK-ARPRGDKLHFEVIDTGIGI 716 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + ++E+ +PF Q+ N +G+GLGL +A+++V+ + G I S KGT + Sbjct: 717 SERDIERLAQPFVQVENQFTKTHQGSGLGLAIARSLVELHGGALVIKSEVKKGTTVSFTL 776 Query: 809 PLYD 812 PL + Sbjct: 777 PLAE 780 >gi|328544516|ref|YP_004304625.1| Multi-sensor signal transduction histidine kinase [polymorphum gilvum SL003B-26A1] gi|326414258|gb|ADZ71321.1| Multi-sensor signal transduction histidine kinase [Polymorphum gilvum SL003B-26A1] Length = 787 Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 91/241 (37%), Positives = 146/241 (60%), Gaps = 2/241 (0%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 K + K AE + KS+FLA +SHE+RTPL AIIGFS+++ FGP+G+ RY EY Sbjct: 535 KYAQEKTNAENANRAKSEFLANISHELRTPLNAIIGFSDIMDRGMFGPIGSERYAEYCRD 594 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG +L+++ND+LD+SKIE+G+M + +P+ ++ V EA +++ A EK I + Sbjct: 595 IHESGTYLLNVINDILDMSKIEAGRMEMTVKPLGVEAVVEEAGRIIRAPAQEKAIEVTCE 654 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 + + AD R++KQ+ LN+LSN + FTP G + +S H + + DTG+G+ Sbjct: 655 VEPGLA-VAADRRALKQVLLNLLSNGVKFTPEKGTVRLS-VHRAGGLARFEIADTGIGIR 712 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++++ +PF Q+ N +G+GLGL +A+++V+ G I S P +GT + P Sbjct: 713 KADVDRLAQPFVQVENQFTKTHKGSGLGLAIARSLVELQGGTLTIASVPGQGTRVAFTLP 772 Query: 810 L 810 L Sbjct: 773 L 773 >gi|85715389|ref|ZP_01046371.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] gi|85697810|gb|EAQ35685.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] Length = 536 Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 102/249 (40%), Positives = 152/249 (61%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I E +Q K A+ AE + KS FLA++SHE+RTPL AI+GFSEV+K++ FG Sbjct: 240 IGELEQAKAISDEARHRAESANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGEHAV 299 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 Y Y+ I SG +L+++N++LD+S+IE+G+ L+ E VSL V+E L++L A+ Sbjct: 300 AVYKTYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAVSLVHVVTECHHLLKLRAS 359 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + I I F +PRI D R+ +QI LN++SNAI FTP GG+I + T++ L Sbjct: 360 NRGITIHEVFEQGMPRIWGDERAARQIVLNLVSNAIKFTPQGGEIWLKIGWTASGGQYLG 419 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+D G G+ E+ + FGQ NS + +G GLGLP+AK+++D + G F + S Sbjct: 420 VKDNGSGIAEDEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDLHGGTFTLKSKLRV 479 Query: 801 GTLIEIIFP 809 GT + + FP Sbjct: 480 GTEVIVTFP 488 >gi|240850171|ref|YP_002971564.1| two-component sensor histidine kinase [Bartonella grahamii as4aup] gi|240267294|gb|ACS50882.1| two-component sensor histidine kinase [Bartonella grahamii as4aup] Length = 773 Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 102/251 (40%), Positives = 156/251 (62%), Gaps = 6/251 (2%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 SE ++ L K+ AE + KS+FLA +SHE+RTPL AI+GFS+++ FGPLG+ Sbjct: 524 SEVEKLNKSLKAEKERAESANKAKSEFLANMSHELRTPLNAILGFSDIMLQSTFGPLGSQ 583 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 RY EY + I SG +L ++ND+LD+SKIE+G+ +L + L+ +SEA+ + A E Sbjct: 584 RYKEYMHDIYNSGTHLLTLINDILDMSKIEAGRFSLDCKNTDLEPIISEAVRTLTPQAQE 643 Query: 682 KRILIRTSFANNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K I++ T N P + A D R++KQI LN++SNA+ FTPSGG I + N +I Sbjct: 644 KNIVVTT---NITPELHAEVDGRAMKQIFLNLISNAVKFTPSGGNIDVCAFKKKN-NLIF 699 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 ++ DTGVG+ ++K +PF Q+ N G+GLGL +++++++ + GK I S Sbjct: 700 KITDTGVGIPQSAIKKLGQPFEQVENQLTKSHTGSGLGLAISRSLLELHKGKLEITSKEM 759 Query: 800 KGTLIEIIFPL 810 KGT + II P+ Sbjct: 760 KGTTVTIIMPI 770 >gi|288959456|ref|YP_003449797.1| two-component sensor histidine kinase [Azospirillum sp. B510] gi|288911764|dbj|BAI73253.1| two-component sensor histidine kinase [Azospirillum sp. B510] Length = 680 Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 110/365 (30%), Positives = 195/365 (53%), Gaps = 22/365 (6%) Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 + +++ +G +L NR L G P + + + T+ L+ R + Sbjct: 317 MGLLSPDGQVLGLNRPACALAGLPAD--------ALVGNRAWEIRGWARTDELATAFRHS 368 Query: 525 LEK-------------ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 +EK +T G+T+ + +++ + + + + DI+E + +L Sbjct: 369 IEKAASGRFVRYETDVVTDGATRVMDV-TIKPVFDEKGTVTVLVVEARDITERVEAAERL 427 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 + A AE + KS FLA +SHE+RTPL AIIGFS+++ ++ FGPLG+PRY +Y ++ Sbjct: 428 AAALDQAEAANRAKSAFLATMSHELRTPLNAIIGFSDIMLHELFGPLGSPRYRDYVRHVQ 487 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 SG +LD++ND+LD+SK+E+G+ L + +A+ +L + A+ + + Sbjct: 488 NSGRHLLDLINDVLDMSKLEAGRYTLDESWLEPADAIETCRALAAIPADAGGVTLEVDCP 547 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 +P++LAD R+++Q+ LN+LSNA+ FTP GG++ +S + + + VRDTG+G+ Sbjct: 548 PCLPKLLADERALRQVLLNLLSNAVKFTPRGGRVTVSALREEDGGIAITVRDTGIGIPAD 607 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 L + ++PF Q +S R GTGLGL + + ++ + G + S P GT I FP+ Sbjct: 608 ALARILEPFQQADSSIPARFGGTGLGLSICRDLMALHGGGLSLDSEPGCGTAATIRFPVC 667 Query: 812 DTSHP 816 + P Sbjct: 668 RVAPP 672 >gi|90420832|ref|ZP_01228737.1| putative histidine kinase [Aurantimonas manganoxydans SI85-9A1] gi|90334807|gb|EAS48579.1| putative histidine kinase [Aurantimonas manganoxydans SI85-9A1] Length = 782 Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 94/236 (39%), Positives = 148/236 (62%), Gaps = 2/236 (0%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K+ AE SS K+ FLA +SHE+RTPL AI+GFSE+++ FGP+G P+Y EYA I +SG Sbjct: 533 KERAETASSAKTTFLANMSHELRTPLNAILGFSEIMRQGTFGPIGCPKYGEYAEDIHQSG 592 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 + +L ++ND+LD++KIE+G++ L+ E V L E +E ++++ A++K I + + Sbjct: 593 HYLLKLINDILDMAKIEAGRLVLNHETVDLSEIATETGKIIEVQADQKAICLDADVPERM 652 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 + D R+ KQI LN+LSNA+ FT +GG + + T + ++ + D G+G+ L+ Sbjct: 653 E-LTVDRRATKQIVLNLLSNAVKFTDNGGTVKMK-LRTVGDAALITIADNGMGIPRAALK 710 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 KPF QI N +GTGLGL +A+++V G+ I S +GT++ I PL Sbjct: 711 SLGKPFEQIENELTRTNKGTGLGLAIARSLVALQGGRMRISSQVGEGTIVAIRLPL 766 >gi|254503637|ref|ZP_05115788.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Labrenzia alexandrii DFL-11] gi|222439708|gb|EEE46387.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Labrenzia alexandrii DFL-11] Length = 516 Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 94/244 (38%), Positives = 153/244 (62%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H I+E + A++ AE + KS FLA +SHE+RTPL AI+GFSE++K++ GP+ Sbjct: 237 HLIAELETANAMSDEARRRAEAANVAKSRFLATMSHELRTPLNAILGFSEIMKDEVLGPM 296 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N Y Y+ I SG +L+++N++LD+S+IE+G+ L E + L+E V E S++ + Sbjct: 297 KNDTYKSYSADIHGSGQHLLNLINEILDLSRIEAGRHELQEESLYLEEVVDECGSMMTVR 356 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 AN K I++ + ++PR+ AD R+++Q+ LN++SNA+ FTP GG++ I TS++ Sbjct: 357 ANAKNIMLHHTLEPDMPRVWADERALRQVVLNLISNAVKFTPVGGEVHIKVGRTSDDGQY 416 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + + DTG G+ E+ ++ FGQ ++ + GTGLGL + +A+V + GKF I S Sbjct: 417 VSITDTGPGIPEDEIPTVLEAFGQGSHAIKSAEPGTGLGLSIVQALVGMHDGKFVIKSQL 476 Query: 799 AKGT 802 GT Sbjct: 477 GVGT 480 >gi|75676406|ref|YP_318827.1| Signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] gi|74421276|gb|ABA05475.1| signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] Length = 605 Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 99/254 (38%), Positives = 154/254 (60%), Gaps = 1/254 (0%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M D+++ KQ+++ L A+ AE+ + K+ FLA +SHE+RTPL AIIGFS++I + Sbjct: 318 VMRDVTDRKQQEHALDLARTAAERADAAKTRFLATMSHELRTPLNAIIGFSDMIVQEATL 377 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL R EYA I+ SG +L +VN +LD+SK+ESG + EP + E + +L+ Sbjct: 378 PLDATRRKEYAQLINDSGQHLLSVVNSILDMSKMESGSFEILPEPFAPREVLLSGSNLLA 437 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 L A + I + T N+P+++ D R+ +QI LN++SNAI FT GG++ IS Sbjct: 438 LKARDNDIELVTRVPENLPQMVGDPRAFRQIVLNLVSNAIKFTERGGRVTIS-ARVEGAR 496 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 ++LRV D GVG+ +L++ PF Q + Q R EGTGLGL + K++V + G+ + S Sbjct: 497 MVLRVVDNGVGIAQEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVGLHGGEIDVQS 556 Query: 797 TPAKGTLIEIIFPL 810 +GT + ++ PL Sbjct: 557 KVEEGTTVTVMLPL 570 >gi|222085322|ref|YP_002543852.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] gi|221722770|gb|ACM25926.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] Length = 771 Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 105/264 (39%), Positives = 165/264 (62%), Gaps = 13/264 (4%) Query: 557 TMHDISEWKQ----EKNKLSHAKK--IAEKESSH-----KSDFLARVSHEIRTPLTAIIG 605 T++D+S +Q +K +LS A +AEKE + KS+FLA +SHE+RTPL AI+G Sbjct: 507 TINDLSASRQILERQKAELSTANTNYLAEKERAEAANKAKSEFLANMSHELRTPLNAILG 566 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE++++Q FGPLG+ RY EYA I SG +L+++ND+LD+SKIE+G + L E + L Sbjct: 567 FSEILQDQMFGPLGSSRYNEYAKDIHDSGKHLLNVINDILDMSKIEAGHIKLSCEKIDLA 626 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + E + L + A K I + S ++ I ++ AD R++KQI LN+LSN++ FT +GG+I Sbjct: 627 PLIEECLRLTSIPAACKNIHVEQSISSGI-KLTADRRAMKQILLNLLSNSVKFTNNGGRI 685 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + T ++ V+L + DTG+G+ L K +PF Q+ + G+GLGL +++++ Sbjct: 686 AVRTRKV-DDAVVLTIADTGIGIPKSALSKIGQPFEQVQSQYAKSKGGSGLGLAISRSLT 744 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + G+ I S GT+I I P Sbjct: 745 LLHHGRMRIRSREGIGTVIAIRIP 768 >gi|167043517|gb|ABZ08213.1| putative histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [uncultured marine microorganism HF4000_APKG2J17] Length = 669 Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 127/392 (32%), Positives = 215/392 (54%), Gaps = 34/392 (8%) Query: 437 DVDTRINKRKMEIEV-MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 D+ R+ + EV + +++ + GI++ +R+G L N+ +I K Sbjct: 285 DITARVQAEEARREVESRFRTVVNSAPMGISLKDRDGKFLLVNKTFGTWMDADPAEIEGK 344 Query: 496 PF-TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL----------LSLRII 544 F +F E+ EI SLD R+ E T EE + ++ I Sbjct: 345 TFHELFAEKQA--------GEIESLD-RKIFE------TGEESVDEAIRLFQDGVTRTIF 389 Query: 545 IKKLPFSSC------YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 K P S S M DI++ KQ + L A + AE + K++FLA +SHE+RT Sbjct: 390 THKSPVRSATGGIVAVSTIMIDITDRKQAEESLRKAMERAEFANRAKAEFLAHMSHELRT 449 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PL AI+G+S+++K+Q FGPLGN +Y +Y I +G +L I++D+LD+SK+E+G++++ Sbjct: 450 PLNAILGYSDILKSQVFGPLGNEKYSDYVENISAAGGHLLGILSDILDVSKVEAGELDIE 509 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 + + A+ E ++ A+ ++ + + A ++PR+ AD R ++QI LN+LSNA+ F Sbjct: 510 DSEIDIAAAIKECKIMMLERADIAKVSLASLVAGDLPRLRADRRRLRQILLNLLSNAVKF 569 Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLG 777 + G++ I+ + +++RV DTG+G+ + K ++PFGQ+ S + GEG+GLG Sbjct: 570 SHEKGKVSIAAETDAAGAIVIRVADTGIGIAPENMGKILQPFGQVKESYVGKPGEGSGLG 629 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L L +++D + G I STP +GT + IIFP Sbjct: 630 LSLVNSLMDLHGGTLDIDSTPGEGTTMNIIFP 661 >gi|296447467|ref|ZP_06889391.1| multi-sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] gi|296255005|gb|EFH02108.1| multi-sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] Length = 597 Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 95/265 (35%), Positives = 154/265 (58%), Gaps = 6/265 (2%) Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 C+ + D++ ++ ++ L+ A++ + S+ K+ FLA VSHE+RTPL AIIGFS+++ + Sbjct: 302 CF---LADVTAARRAEDMLAEARRESALASAGKTRFLANVSHELRTPLNAIIGFSDMLAS 358 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 ++ P + EYA I SG +L +VN +LD+SKIESG M + EP S E + + Sbjct: 359 EQLSPADPSKRREYAEIIHNSGQHLLAVVNSILDMSKIESGSMQIVPEPFSAQELADQCV 418 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 ++QL A + RI + +A+ +P I+ D R+ KQI +N+LSNA+ FTP+ G++ + Sbjct: 419 KMMQLKAEQARIALACDYADGLPEIVGDKRACKQILINLLSNAVKFTPADGRVAVRLYPD 478 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 N I V D+G+G+ +L + PF Q + EGTGLGL + + +V + G Sbjct: 479 GNRLAIA-VSDSGIGIAAADLGRLGDPFFQASAAYDRAYEGTGLGLSVVRGLVGLHGGAI 537 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHPH 817 + S P +GT + + PL PH Sbjct: 538 AVESAPQRGTCVTVRLPL--DCRPH 560 >gi|115523964|ref|YP_780875.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] gi|115517911|gb|ABJ05895.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] Length = 771 Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 94/241 (39%), Positives = 149/241 (61%), Gaps = 2/241 (0%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 K + K AE + KS FLA +SHE+RTPL AIIGFSE++ + FG LG+ +Y EY + Sbjct: 519 RKYAEEKYRAEDANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGMFGRLGSEKYQEYCH 578 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I SG+ +L+++ND+LD+SKIE+G+M L EP+ +SE++ +V A K++ + Sbjct: 579 DILTSGHYLLEVINDILDMSKIEAGRMKLDLEPLDFAGTLSESLRVVSGRAENKQLELHA 638 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 I ++AD R+VKQI +N+LSNA+ FTP GGQI + + ++L + DTG+G+ Sbjct: 639 DIEQGIS-VIADRRAVKQILVNLLSNAVKFTPEGGQITVR-GRARADSIVLMIADTGIGI 696 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 L K +PF Q+ + G+GLGL +AK++ + + G + S +GT++ ++ Sbjct: 697 APQSLRKLGQPFEQVESQLTKSYHGSGLGLAIAKSLTNLHGGSMRLRSQLGQGTVVRLVL 756 Query: 809 P 809 P Sbjct: 757 P 757 >gi|209967043|ref|YP_002299958.1| histidine protein kinase DivJ (or putative bacteriophytochrome) [Rhodospirillum centenum SW] gi|209960509|gb|ACJ01146.1| histidine protein kinase DivJ (or putative bacteriophytochrome) [Rhodospirillum centenum SW] Length = 894 Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 93/258 (36%), Positives = 155/258 (60%), Gaps = 4/258 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + ++D++ +KQ + L A++ A + F+A SHE+RTPL AIIGFSE+I+ Q F Sbjct: 633 ICLYDVTAYKQAEEALMAARQQAISAMEQQRKFIAAASHELRTPLNAIIGFSEMIQMQTF 692 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GP+G+ RY EYA I +G +LD++ND+L + +++ G PV L++ + +A+ +V Sbjct: 693 GPVGDTRYQEYATDILNAGRHLLDLINDILTLGRMQPGAAAAADAPVCLNDEIRQALRMV 752 Query: 676 QLYANEKRILIRTSFANNIPRILADL--RSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + A + I + + RIL D+ R+V+QI LN+LSNA+ FTP GGQ+ + Sbjct: 753 EDQARARSIAV--VWEEPPYRILLDMEARAVRQILLNLLSNAVKFTPPGGQVSVVLGGHD 810 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E++ L + DTG+G+ ++E +PF + N EGTGLGL + +A+++A+ G+ Sbjct: 811 GEDLWLEISDTGIGIAEADMEHVFEPFFRAGNVYTRSTEGTGLGLSIVRALMEAHGGRVS 870 Query: 794 IFSTPAKGTLIEIIFPLY 811 + S +GT + I P + Sbjct: 871 LRSRYGQGTTLRITLPSW 888 >gi|75675393|ref|YP_317814.1| Signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] gi|74420263|gb|ABA04462.1| signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] Length = 779 Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 99/256 (38%), Positives = 157/256 (61%), Gaps = 10/256 (3%) Query: 555 SLTMHDISE-WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 ++ + D+++ + EKN+ AE + KS FLA +SHE+RTPL AIIGFSE++ N Sbjct: 513 AIKLADLAQKYADEKNR-------AEDANRAKSKFLANMSHELRTPLNAIIGFSEIMSNG 565 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 FG LG+ +Y EY I SG +L+++ND+LD+SKIE+G+ NL E + L + E++ Sbjct: 566 MFGTLGSTKYSEYCRDILTSGQYLLEVINDVLDMSKIEAGRTNLDMETLDLTGVLDESLR 625 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +V ++K + ++I I+AD R+VKQI +N+LSNA+ FTP+ G+I+ + Sbjct: 626 VVSGRTSDKGLTFDVRSDDDIS-IIADRRAVKQIMVNLLSNAVKFTPASGRIMARSKVFE 684 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 N V L + DTG+G+ + L + KPF Q+ + G+GLGL +AK++V+ + G Sbjct: 685 N-SVTLTIADTGIGIAPHALRRLGKPFEQVESQLTKTHAGSGLGLAIAKSLVNLHSGSMR 743 Query: 794 IFSTPAKGTLIEIIFP 809 I S P GT++ + P Sbjct: 744 IRSKPGAGTVVRVTLP 759 >gi|49474041|ref|YP_032083.1| two-component sensor histidine kinase [Bartonella quintana str. Toulouse] gi|49239545|emb|CAF25902.1| Two-component sensor histidine kinase [Bartonella quintana str. Toulouse] Length = 773 Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 95/240 (39%), Positives = 150/240 (62%), Gaps = 2/240 (0%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L K+ AE + KS+FLA +SHE+RTPL AI+GFS+++ FGPLG+ RY EY I Sbjct: 533 LKAEKERAESANKAKSEFLANMSHELRTPLNAILGFSDIMLQSTFGPLGSKRYKEYMRDI 592 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG+ +L ++ND+LD+SKIE+G+ + + + L+ +SEA+ + A EK I + T+ Sbjct: 593 YNSGSHLLTLINDILDMSKIEAGRFTVDCKNIDLEPIISEALRTLIPQAQEKNIFVTTNI 652 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 A + D R++KQI LN++SNA+ FTPSGG I + N ++ +++DTGVG+ Sbjct: 653 ATKL-HAEVDGRAIKQIFLNLISNAVKFTPSGGNIDVCALKKKN-NLVFKIKDTGVGIPQ 710 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 ++K +PF Q+ N G+GLGL +++++++ + GK I S KGT + I P+ Sbjct: 711 SAIKKLGQPFEQVENQLTKTYTGSGLGLAISRSLLELHKGKLEIISKEMKGTTVTITIPI 770 >gi|319408114|emb|CBI81767.1| Sensor protein (modular protein) [Bartonella schoenbuchensis R1] Length = 755 Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 124/403 (30%), Positives = 204/403 (50%), Gaps = 29/403 (7%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 A + P +P P DV + ++ E+ + S+L+ +DG+ ++ +G + + A Sbjct: 366 AKETPVQLPCAQTLPVDVIKQALIKEPEV----ILSLLDTVTDGVLWLDGQGCVQFASDA 421 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL---EKITLGSTKEEK 537 L GY ++++L + + + ++ Y I Q E L TK + Sbjct: 422 ALALIGYEMDELLAQQLSSLFTFQSRDLIEEYFKLIRMKGKNQVFNHGETADL-MTKNHE 480 Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + + I I L Y + + D++E LS KI+E+ + V HE+R Sbjct: 481 NIKVSITIVPLALQDNYVVMLRDMTEMT-----LSPLDKISEENK------MIEVVHEMR 529 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN- 656 TPL A+IGF+E++K+ RFG + N RY Y I SG +L +VN LL+ SK +N Sbjct: 530 TPLNALIGFAEIMKDGRFGLIENERYRRYLRDIVSSGKHILSLVNQLLEHSKANYSSLNS 589 Query: 657 -----LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 L + + + +I+ ++ AN I++R +P I + +QI N+ Sbjct: 590 TIDAPLMTQKFDVTACLRSSIAFLETQANHNGIIMRIVSPARVPFIGISQQIFQQIIWNL 649 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 LSNAI FTPSGGQI+I ++ E V + + D G+GM++ E+ +AM+P+GQ+ G Sbjct: 650 LSNAIRFTPSGGQIVIHVSYGKKERVKISISDNGLGMSDEEVVRAMQPYGQVERKDGQCG 709 Query: 772 E----GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + GTGLGLP+ K MV+ G+F +FS P GT +E+ FP+ Sbjct: 710 DNIFVGTGLGLPICKTMVEEVGGQFLLFSKPNHGTTVEMFFPM 752 Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 86/176 (48%), Gaps = 21/176 (11%) Query: 64 NTNYLD-SENTFVFDP--IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD 120 N + LD + +F F P +PR RF W +DA GY E+S+EL +T+G + ++IG Sbjct: 195 NEDELDRGQGSFSFKPHLLPR--RFIWKMDADGYFCEVSKELAETVGPISSRIIGSDCHK 252 Query: 121 VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG 180 ++D + + + ++ W + WP++ V ++L+A+P++ NR+ G+ G Sbjct: 253 LADQFNDEGYRSLSSFIEAAIPWREQKVQWPVDDCLERVDVELSAVPVFDTNRQLKGYHG 312 Query: 181 FGIVHV-----NRVDNDPRALGKRLDK-KFSHLHEIKK----------GHSSVEKE 220 FG++ N+ D P L + + S HEI + GH + KE Sbjct: 313 FGVLKAQEKIQNKSDKKPGIKTSGLSEIERSAFHEIAERLRGELHLSLGHENTAKE 368 >gi|163867966|ref|YP_001609170.1| two-component sensor histidine kinase [Bartonella tribocorum CIP 105476] gi|161017617|emb|CAK01175.1| two-component sensor histidine kinase [Bartonella tribocorum CIP 105476] Length = 773 Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 100/242 (41%), Positives = 151/242 (62%), Gaps = 6/242 (2%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L K+ AE + KS+FLA +SHE+RTPL AI+GFS+++ FGPLG+ RY EY + I Sbjct: 533 LKAEKERAESANKAKSEFLANMSHELRTPLNAILGFSDIMLQSTFGPLGSQRYKEYMHDI 592 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG +L ++ND+LD+SKIE+G+ L + L+ +SEA+ + A EK I + T Sbjct: 593 YNSGTHLLTLINDILDMSKIEAGRFTLDCKNTDLEPIISEAVRTLTPQAQEKNIAVTT-- 650 Query: 691 ANNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 N P++ A D R++KQI LN++SNA+ FTPSGG I + N +I ++ DTGVG+ Sbjct: 651 -NITPKLHAEVDGRAMKQIFLNLISNAVKFTPSGGNIDVCAFKKKN-NLIFKITDTGVGI 708 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 ++K +PF Q+ N G+GLGL +++++++ + GK I S KGT + II Sbjct: 709 PQSAIKKLGQPFEQVENQLTKSHTGSGLGLAISRSLLELHKGKLEITSKEMKGTTVTIIM 768 Query: 809 PL 810 P+ Sbjct: 769 PI 770 >gi|88658417|ref|YP_507680.1| sensor histidine kinase [Ehrlichia chaffeensis str. Arkansas] gi|88599874|gb|ABD45343.1| sensor histidine kinase [Ehrlichia chaffeensis str. Arkansas] Length = 470 Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 95/245 (38%), Positives = 150/245 (61%), Gaps = 1/245 (0%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 KL AK++AE+E+ KS FLA VSHE+RTPL +IIGFSE++K + G + N Y EY N Sbjct: 220 KLKEAKEVAEQENVSKSQFLANVSHELRTPLNSIIGFSEMMKAESMGAIENVHYKEYIND 279 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I +G +L ++ND+LD SK E+ K+ + F L + +S +++ A E ++ + Sbjct: 280 IHNAGVHLLSLINDILDFSKAEADKLVVEFVKFDLGKVISSCFNMILPRAEEAKVRLEQV 339 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVILRVRDTGVGM 748 +N ++AD + +KQ+ +N+LSN+I FTP G + ++ N +++ V D G+G+ Sbjct: 340 LPSNQIIMVADPKRMKQVIINLLSNSIKFTPENGCVKLVVEYDLENSMIVIEVIDNGIGI 399 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L K M FGQ+ + + EGTGLGLPL+K +V+ G F I S P GT++ ++F Sbjct: 400 AQQDLYKVMSVFGQVDSRHARKYEGTGLGLPLSKKLVELMDGVFKIKSEPNLGTIVTLMF 459 Query: 809 PLYDT 813 P +T Sbjct: 460 PYTNT 464 >gi|154245353|ref|YP_001416311.1| integral membrane sensor signal transduction histidine kinase [Xanthobacter autotrophicus Py2] gi|154159438|gb|ABS66654.1| integral membrane sensor signal transduction histidine kinase [Xanthobacter autotrophicus Py2] Length = 484 Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 93/226 (41%), Positives = 138/226 (61%), Gaps = 2/226 (0%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHE+RTPL AI+GFSE++ + PL + R +YA I SG +L +VND+ Sbjct: 233 KSHFLAAMSHELRTPLNAILGFSELLATETGAPLDDARKADYARIIHESGQHLLGLVNDI 292 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+S++E+G L E V + V+ +V + A + ++T FA +P I AD R+ Sbjct: 293 LDLSRVEAGAYELEREGVDVAALVAGCAEMVAIDAGRAGVAVKTVFAPRLPAIDADRRAF 352 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 KQI LN+LSNA+ FTP GG++ +S + E V +RVRDTG GM ++ + +PF Q Sbjct: 353 KQIVLNLLSNAVKFTPEGGRVQVS-VRSEGEAVAIRVRDTGPGMRPEDVARLGEPFFQAG 411 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + Q R G+GLG+ + K +V + G F + S P +GT + + PL Sbjct: 412 DCTQ-RARGSGLGIAVVKGLVKLHGGDFRVESAPGRGTSVTVTLPL 456 >gi|163795303|ref|ZP_02189270.1| multi-sensor signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159179289|gb|EDP63820.1| multi-sensor signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 664 Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 93/241 (38%), Positives = 150/241 (62%), Gaps = 1/241 (0%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 + L+ K+ AE S KS FLA +SHE+RTPL A++GFSE++K + FGPLG RY EYA+ Sbjct: 424 DMLTREKERAEAASRTKSQFLANMSHELRTPLNAVLGFSEILKTEAFGPLGAKRYKEYAD 483 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I SG+ +L ++ND+LD+SKIE+GK LH E +L + +++ A E ++++ Sbjct: 484 DIHASGHHLLSLINDILDMSKIEAGKYRLHKEKEALASIIGAVGRMMRGRAAEADLVLQV 543 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + + D+R++KQ+ +N+L+NAI FTP+GG++ + ++ V + V D G+G+ Sbjct: 544 ELPDPALVVNVDVRAIKQVLINLLANAITFTPAGGRVRLG-VRVHDDGVAMYVADNGIGI 602 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 EL + ++PF QI + + EGTGLGL L+ A+V+ + G + S GT + + Sbjct: 603 PEEELPRLLRPFEQIDGADRRGREGTGLGLALSNALVELHSGTLTLESQIGIGTTVTVRL 662 Query: 809 P 809 P Sbjct: 663 P 663 >gi|328544444|ref|YP_004304553.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [polymorphum gilvum SL003B-26A1] gi|326414186|gb|ADZ71249.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Polymorphum gilvum SL003B-26A1] Length = 517 Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 95/251 (37%), Positives = 154/251 (61%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H I+E +Q +++ AE+ + KS FLA +SHE+RTPL AI+GFSE++K++ GP+ Sbjct: 237 HLIAELEQANAVSDESRRRAEEANLAKSRFLATMSHELRTPLNAILGFSEIMKDEVLGPM 296 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 NP Y YA I SG +L+++N++LD+S+IE+G+ L+ E V+L + V + +++Q+ Sbjct: 297 ANPTYRSYAADIHGSGQHLLNLINEILDLSRIEAGRYELNEEAVTLIDIVEDCRTMMQIR 356 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A K I IR S + +PR+ AD R+++Q+ LN+LSNA+ FTPS G++ I Sbjct: 357 AKAKDITIRESHEDGLPRLWADERAIRQVILNLLSNAVKFTPSSGEVTIRIGAAPGGGQF 416 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + +RD G G+ E+ ++ FGQ + + GTGLGL + +A+V + G F + S Sbjct: 417 VSIRDNGPGIPEDEIPIVLQAFGQGAIAIKSAEAGTGLGLSIVQALVAQHGGTFELKSRL 476 Query: 799 AKGTLIEIIFP 809 +GT + P Sbjct: 477 REGTEAIVTLP 487 >gi|163795854|ref|ZP_02189818.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159178887|gb|EDP63423.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 476 Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 95/249 (38%), Positives = 150/249 (60%), Gaps = 1/249 (0%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 ++ K++ + + + KS FLA +SHE+RTPL AIIGFSEV++ + FGP+G RYIEY Sbjct: 228 QRLKITADYAVEHEANRAKSAFLANMSHELRTPLNAIIGFSEVLQTETFGPIGQKRYIEY 287 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 A I+ +G +L +++++LD+SKIE+GK++L+ + ++ A+ ++ + + I Sbjct: 288 ATDINMAGYHLLHVIDEVLDLSKIEAGKVDLNLSTIDPTGVIAAALDMLGPDSERHGVEI 347 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-THTSNEEVILRVRDTG 745 + + IP + D ++QI LN++SN++ +T GG + +ST T + + DTG Sbjct: 348 QRALTATIPVMETDEGKLRQIVLNLVSNSLKYTKPGGSVTVSTEVDTDLSATQITISDTG 407 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 VGM+ EL AM PFG+I ++ GTGLGLPL K+ VD G F I S P GT + Sbjct: 408 VGMSKDELALAMTPFGRIDSAMSYTRGGTGLGLPLTKSFVDLLGGSFQIDSVPGVGTTVS 467 Query: 806 IIFPLYDTS 814 I P+ S Sbjct: 468 IQLPIITAS 476 >gi|196232624|ref|ZP_03131476.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] gi|196223386|gb|EDY17904.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] Length = 375 Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 107/362 (29%), Positives = 182/362 (50%), Gaps = 5/362 (1%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ----NTPSV 508 Q +LEA D + I+N+ G I+ N KLFG+ E++L +P + + Q + PS Sbjct: 8 QFRELLEAAPDAMVIVNQAGEIVLVNSQTEKLFGFAREELLGRPIEILIPQRFRGHHPSH 67 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568 + Y + + +++ L E + + + + P + + D ++ K+ + Sbjct: 68 RDGYFGDPHVRPMGASMDLYGLRKDGTEFPVEISLSPLRTPEGLLVTSAIRDTTDRKRIE 127 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 L E+ + K FLA +SHE+RTPL IIGF+E + + + GP+ N + EY Sbjct: 128 RSLQEKNAELERANQAKDRFLASMSHELRTPLNGIIGFAEFLADGKPGPV-NGKQKEYLE 186 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I G +L ++ND+LD+ K+++GK+ LH +++A+ E + V+ A+ KRI + Sbjct: 187 DILNGGRHLLHLINDMLDLVKVQAGKLELHLATFRIEDAIEEVCAGVRPLADNKRIGVHV 246 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 A I D + KQ+ N+LSNAI FT GGQ+ + + L VRDTG+G+ Sbjct: 247 EIAPGFSPITHDEQRFKQVLYNLLSNAIKFTDDGGQVEVKVEQRGADRFCLSVRDTGIGI 306 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 ++++ F Q+ R GTGLGL L + +V+ G + S +G+ + Sbjct: 307 KPEDIQRLFVEFEQLETGHARRFGGTGLGLALTRKIVELKGGTISVESAVGRGSTFSVTL 366 Query: 809 PL 810 PL Sbjct: 367 PL 368 >gi|312116146|ref|YP_004013742.1| histidine kinase [Rhodomicrobium vannielii ATCC 17100] gi|311221275|gb|ADP72643.1| histidine kinase [Rhodomicrobium vannielii ATCC 17100] Length = 635 Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 99/248 (39%), Positives = 157/248 (63%), Gaps = 3/248 (1%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + ++ +L AK AE+ + KS FLA +SHE+RTPL AI+GFSE+I+++ G R Sbjct: 365 KLRRTNAELVAAKSRAEQANEAKSAFLANMSHELRTPLNAILGFSEIIRDKMIGN-DIDR 423 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y YA + +SG +L+IVND+LD+++IE+GK+ LH + ++LD + ++ VQ A Sbjct: 424 YASYAADVHKSGTHLLNIVNDILDVTRIEAGKLELHEDEINLDTLIHRSLLDVQSQALAG 483 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 +L+ + A N+ +L D +KQI +N+LSNAI FT GG+I+IS T + + +++ Sbjct: 484 GVLL-AAPARNLGVVLRGDKGKLKQILVNLLSNAIKFTAKGGRIVISATPEWDGGLCVKI 542 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RDTG+GM+ E+ +A++ F Q+ N R EG GLGLPLA + + + G + S P +G Sbjct: 543 RDTGIGMSGDEIRQALELFRQVENGLARRYEGAGLGLPLAVRLTELHGGTLTVDSIPGEG 602 Query: 802 TLIEIIFP 809 T + + FP Sbjct: 603 TEVSVRFP 610 >gi|159184529|ref|NP_353940.2| two component sensor kinase [Agrobacterium tumefaciens str. C58] gi|159139836|gb|AAK86725.2| two component sensor kinase [Agrobacterium tumefaciens str. C58] Length = 510 Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 99/254 (38%), Positives = 152/254 (59%), Gaps = 5/254 (1%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + D++E E+ + A+K AE ES++ KS FLA VSHE+RTPL A++GFS+++ + F Sbjct: 211 LSDVTEM--ERLRRDVARKAAEAESANDAKSRFLAAVSHELRTPLNAVLGFSDILAGEYF 268 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L N R EY I +SG +L +VN +LD+SK+E+G+ L E + E ++ +++ Sbjct: 269 GRLENDRQREYVGLIRQSGAHLLSVVNTMLDMSKLEAGRYELLMESFPISETIASCEAML 328 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 L A EK + + + I I AD R+++Q+ +N+ NAI FT +GG + I Sbjct: 329 GLQAKEKGLTLTSRIQRGIGEISADQRAIRQVLINLAGNAIKFTDAGGVVSIDAAREGG- 387 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + L V DTG+G+ + ++E +PF Q+ N R EGTGLGL L K +V + G F I Sbjct: 388 MLKLTVSDTGIGIASDKIELLGQPFMQVQNEYTRRYEGTGLGLSLVKGLVALHGGTFVIT 447 Query: 796 STPAKGTLIEIIFP 809 S PA+GT++ I P Sbjct: 448 SKPAEGTVVTITLP 461 >gi|222148029|ref|YP_002548986.1| two component sensor kinase [Agrobacterium vitis S4] gi|221735017|gb|ACM35980.1| two component sensor kinase [Agrobacterium vitis S4] Length = 790 Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 105/264 (39%), Positives = 160/264 (60%), Gaps = 13/264 (4%) Query: 557 TMHDIS----EWKQEKNKLSHA--KKIAEKESSH-----KSDFLARVSHEIRTPLTAIIG 605 T+ D+S + +++K +LS A K +AEK+ + KS+FLA +SHE+RTPL AI+G Sbjct: 507 TIGDLSSSQKKLERQKAELSEANEKYLAEKQRAEAANKAKSEFLANMSHELRTPLNAILG 566 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE++ FGP+G+P+Y EYA I SG +L+++ND+LD+SKIE+G M L E V Sbjct: 567 FSEILSTGMFGPIGSPKYGEYARDIHDSGKHLLNVINDILDMSKIEAGHMLLKCENVDFA 626 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + E + L + A +K I I A+ + + AD R++KQI LNILSNA+ FT GG+I Sbjct: 627 SLIDETLRLTTISAKDKNIAIEQRIASGLA-MTADRRALKQILLNILSNAVKFTNEGGRI 685 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + H + V L V DTG+G+ + K +PF Q+ + G+GLGL ++++++ Sbjct: 686 SVR-AHKIDGAVRLLVSDTGIGIPKQAISKIGQPFEQVQSQYAKSKGGSGLGLAISRSLI 744 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + G I S KGT++ I P Sbjct: 745 MLHGGSLRIRSREGKGTVVSINVP 768 >gi|288957783|ref|YP_003448124.1| two-component sensor histidine kinase [Azospirillum sp. B510] gi|288910091|dbj|BAI71580.1| two-component sensor histidine kinase [Azospirillum sp. B510] Length = 593 Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 96/245 (39%), Positives = 151/245 (61%), Gaps = 2/245 (0%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 +++ +L K++AE + KS+FLA +SHE+RTPL AIIGF++V+ + FGP P++ E Sbjct: 350 EQRRRLQSEKELAEAANQAKSEFLANMSHELRTPLNAIIGFADVLMSGIFGP-APPKHAE 408 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y I +SG +LD+VN+LLD++KIE+G++ L ++LD+ +++ + LV+ A K + Sbjct: 409 YLTAIHQSGRHLLDLVNELLDMAKIEAGRLELFPTRIALDDFLTDCLGLVEALALRKGVT 468 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII-STTHTSNEEVILRVRDT 744 + + AD ++Q LN+LSNAI FTP+GG + + +T ++ VRD+ Sbjct: 469 LTGDAIAPGLLVTADGVRMRQAVLNLLSNAIKFTPAGGTVRLEATADPDGSGTVITVRDS 528 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+GM E+ AM+PF Q+ N GTGLGLPLA+ V+A+ G + S P GT + Sbjct: 529 GIGMNAEEMLIAMEPFRQVHNYLTKAEAGTGLGLPLARRFVEAHGGTLTLDSRPGAGTTV 588 Query: 805 EIIFP 809 I P Sbjct: 589 TIRLP 593 >gi|254420304|ref|ZP_05034028.1| PAS fold family [Brevundimonas sp. BAL3] gi|196186481|gb|EDX81457.1| PAS fold family [Brevundimonas sp. BAL3] Length = 759 Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 95/236 (40%), Positives = 144/236 (61%), Gaps = 6/236 (2%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE + KS+FLA +SHE+RTPL AI GFSE++ + FGP+G +Y YA I +SG + Sbjct: 509 AEAANQAKSEFLANMSHELRTPLNAINGFSEIMAAELFGPIGE-KYKGYAGDILKSGQHL 567 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ND+LD++KIE+GKM LH+EPVSL + +A L++ E + + A ++P I Sbjct: 568 LSLINDILDMAKIEAGKMTLHYEPVSLRDVCEDAARLMRGKVLESGLTLEIE-AGDLPDI 626 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTT----HTSNEEVILRVRDTGVGMTNYEL 753 AD R VKQ+ LN++SNA+ FTP GG + +S T + V + DTG+G+ + Sbjct: 627 EADHRGVKQVMLNLISNAVKFTPEGGTVTLSLTPFKGAAGEDRVRVACADTGIGIAPEHM 686 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + +PF Q+ +GTGLGL L K++++ + G+ I S P GT++ P Sbjct: 687 VRLARPFEQVEGQHSKTTQGTGLGLALTKSLIEMHGGRLNIESEPGVGTVVSFDLP 742 >gi|325292298|ref|YP_004278162.1| two component sensor sensor histidine kinase [Agrobacterium sp. H13-3] gi|325060151|gb|ADY63842.1| two component sensor sensor histidine kinase [Agrobacterium sp. H13-3] Length = 514 Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 98/254 (38%), Positives = 151/254 (59%), Gaps = 5/254 (1%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + D++E + + + A+K AE ES++ KS FLA VSHE+RTPL A++GFS+++ + F Sbjct: 216 LSDVTEMELLRRDV--ARKAAEAESANDAKSRFLAAVSHELRTPLNAVLGFSDILAGEYF 273 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L N R EY I +SG +L +VN +LD+SK+E+G+ L E + E +S +++ Sbjct: 274 GRLENDRQREYVGLIRQSGAHLLSVVNTMLDMSKLEAGRYELMMESFPIGETISSCEAML 333 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 L A EK + + + I I AD R+++Q+ +N+ NAI FT +GG + I Sbjct: 334 GLQAKEKGLTLTSRIQRGIGEISADQRAIRQVLINLAGNAIKFTDAGGVVSIDAAR-EGR 392 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + L V DTG+G+ + ++E +PF Q+ N R EGTGLGL L K +V + G F I Sbjct: 393 MLKLTVSDTGIGIASDKIELLGQPFMQVQNEYTRRYEGTGLGLSLVKGLVALHGGTFAIT 452 Query: 796 STPAKGTLIEIIFP 809 S P GT++ I+ P Sbjct: 453 SQPGAGTVVTIMLP 466 >gi|144899595|emb|CAM76459.1| sensory transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 565 Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 114/372 (30%), Positives = 189/372 (50%), Gaps = 28/372 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S++EA + I ++ +G + NR ++FG + + ++ L+ N + Sbjct: 192 SLVEAAASIIVVVGADGRVREFNREAERMFGLSAAAAIGRAWSTILDSNRVGQDGDRFDQ 251 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL-PFSSCYSLTM--HDISEWKQEKNKLS 572 L ++R+ + E +L II L P S + + DI++ ++ + L Sbjct: 252 WLD-EVRKGWQ-----VRDRETVLGQHIISWNLAPLSDDDGIVIVGQDITQRRRAETALR 305 Query: 573 HAKKI------------------AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 A + AE+ + KS+FLA +SHE+RTPL AIIGFS+ ++ Sbjct: 306 QANDLLEYRVAARTAEAEAACRQAEEANRGKSEFLANMSHELRTPLNAIIGFSDAMRLGV 365 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 GP+ NP Y EY I SG +L I+ND+LD+SK+E+G +L E + L + I L Sbjct: 366 MGPVENPLYAEYVQAIWESGTHLLSIINDVLDLSKVEAGHFDLAPERLPLTPLAEQVIRL 425 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 + A R+ +R + L D +KQ+ N+L+NA+ FTP+GG +I+S Sbjct: 426 MAEKAMRHRLELRLQVDGDPGHALVDPLRLKQVLFNLLANAVKFTPAGGHVILSLGRDDG 485 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 I +V D+G+GM ++++ ++PF QI + R GTGLGLPLAK ++ + G + Sbjct: 486 GSWI-KVADSGIGMRPEDIDRVLEPFVQIDSHLSRRNMGTGLGLPLAKRFIELHGGTLAL 544 Query: 795 FSTPAKGTLIEI 806 S P +GT++ I Sbjct: 545 ASQPGQGTVVTI 556 >gi|46202456|ref|ZP_00053185.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 1136 Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 92/263 (34%), Positives = 157/263 (59%), Gaps = 6/263 (2%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I + + +L AK IAE + KS+FLA +SHE+RTPL A++GF++++ ++ +G LGN Sbjct: 876 IDSLRSTQGELKEAKNIAESANRAKSEFLANMSHELRTPLNAVLGFAQIMADEMWGSLGN 935 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 RY EY I SG +L ++ +LD+S IE+G+ L V++ + + ++ L+ A Sbjct: 936 DRYKEYIGIIVNSGQHLLALIGQVLDMSVIEAGRTTLRESNVNISDVIVTSMRLLSSQAE 995 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 I + S +++P + DL ++++I LN+L NA+ FTP+GG + ++ +H V + Sbjct: 996 NSEINLTASVPDDLPHMRGDLTAIQRILLNLLGNALKFTPAGGAVTLTASH-DQSGVTIC 1054 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQI---RGEGTGLGLPLAKAMVDANMGKFYIFST 797 VRDTG+G++ ++L++ + PF Q Q+I EG GLGLP+ K++++ + G I S Sbjct: 1055 VRDTGIGISAHDLDRVLMPFEQ--GGQRILRKEREGVGLGLPITKSLMELHGGTLSIDSK 1112 Query: 798 PAKGTLIEIIFPLYDTSHPHDCI 820 KGT + FP + HD + Sbjct: 1113 EGKGTTACVHFPASRSLAAHDVM 1135 >gi|88606773|ref|YP_505514.1| sensor histidine kinase [Anaplasma phagocytophilum HZ] gi|88597836|gb|ABD43306.1| Sensor histidine kinase PleC [Anaplasma phagocytophilum HZ] Length = 470 Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 94/245 (38%), Positives = 147/245 (60%), Gaps = 1/245 (0%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L K+ AEKES KS FLA VSHE+RTPL +IIGFSE+++ + GPLGN +Y EY Sbjct: 220 ELQEKKENAEKESVSKSQFLANVSHELRTPLNSIIGFSEIVQRESLGPLGNAQYKEYIKE 279 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+ +G +L ++ND+LD SK E+ K+++ L + V +++ A E ++ ++ Sbjct: 280 INHAGVHLLSLINDILDFSKAEANKLSVELVKCDLRKIVDSCFNMMLPKAQEAKVELKRD 339 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 + ++ D R +KQ+ LNIL+N++ FTP G + +S EEV++ + D G+G+ Sbjct: 340 MPESQIVLMVDARRMKQVILNILTNSMKFTPEKGFVRLS-VEKKQEEVVIEICDNGIGIA 398 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L K M FGQ ++ + EGTGLGLPL+K +V+ G F I GT++ + FP Sbjct: 399 QQDLYKVMSVFGQADSTHSRKYEGTGLGLPLSKKLVELMNGTFSIKGEANLGTVVTLSFP 458 Query: 810 LYDTS 814 + S Sbjct: 459 CVEES 463 >gi|222085300|ref|YP_002543830.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] gi|221722748|gb|ACM25904.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] Length = 510 Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 101/254 (39%), Positives = 153/254 (60%), Gaps = 5/254 (1%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 DIS +Q +++ +K AE ES++ KS FLA VSHE+RTPL AI+GFS+++ + FG Sbjct: 213 RDISYDQQLRDEAD--RKTAEAESANDAKSRFLAAVSHELRTPLNAILGFSDILSGEYFG 270 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L N R EY I +SG +L +VN +LD+SKIE+G+ L EP ++ ++ +++ Sbjct: 271 KLENNRQREYVGLIRQSGAHLLSVVNTMLDMSKIEAGRYELVPEPFPIEASIGACEAMLA 330 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 L A EK + + + + I+AD R+++Q+ +N++ NAI FT +GG + I ++ Sbjct: 331 LQAKEKGLTLTSRVQRGLGDIVADQRAIQQVLINLVGNAIKFTDAGGAVTIDAA-MADGM 389 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + L V DTG+G+ L +PF QI N R GTGLGL L K +V + G F I S Sbjct: 390 LKLSVCDTGIGIAADRLASLGQPFVQIQNDYTRRYAGTGLGLSLVKGLVGLHGGSFAIAS 449 Query: 797 TPAKGTLIEIIFPL 810 P +GT+I I+ PL Sbjct: 450 APGEGTVITILIPL 463 >gi|254415932|ref|ZP_05029689.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196177359|gb|EDX72366.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1821 Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 142/496 (28%), Positives = 238/496 (47%), Gaps = 32/496 (6%) Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392 F Y+ +F N +L+ +Y S+ A L+ P + + R D T Sbjct: 1075 LFGYNRTEIFGRNIEYLMPPRYHSIHTHHRADYLTH----PSKRTMGKSQDLYAKRQDGT 1130 Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 L TIQ + + + F+ Q E+ E + ++ ++ + E E Sbjct: 1131 EFPIEVGLSTIQ-TKNGTFVIAFLTDITERQQAEH------EIKRLNQKLESQIRETET- 1182 Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 + I+E +GI + + +G N+A++++ GY +IL FL P N + Sbjct: 1183 RYAQIVELAEEGIWVTDVQGNTTYINQAMARMLGYTEVEILGHAIADFL----PPGDNRF 1238 Query: 513 LTEILSLDL------RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566 T S+ L RQ +E T +S ++ ++DI+E KQ Sbjct: 1239 -TSASSIPLHPNQVHRQEVELRTKSGNTIWAYMSTSPVLDDQGNLLWSCALVYDITERKQ 1297 Query: 567 EKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 + +L S A + + K +FLA +SHE+RTPL AI+G +E ++ + +G L Sbjct: 1298 AEKQLRESNERISLANAELARATRLKDEFLASMSHELRTPLNAILGLAEALQEEVYGSL- 1356 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P+ + I++SG +LD++ND+LD+SKIESGKM+L VS+D +++ ++ A Sbjct: 1357 TPKQHKSLATIEQSGKHLLDLINDILDLSKIESGKMSLSVSLVSVDSLCESSLTFIKQQA 1416 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS-TTHTSNEEVI 738 +K I + A + I D R ++Q+ +N+LSNA+ FTP GG++ + TT E++ Sbjct: 1417 QQKNIRLEYHIAPGLSEIEVDERRIRQVLVNLLSNAVKFTPDGGKVSLQVTTDPDGEKLQ 1476 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 L V DTG+G+ L+K KPF Q+ +S R GTGLGL L + +V+ G + S Sbjct: 1477 LSVTDTGIGIAPENLDKLFKPFVQLDSSLSRRYAGTGLGLALVRRIVELQGGSIALESEV 1536 Query: 799 AKGTLIEIIFPLYDTS 814 KG+ + P +S Sbjct: 1537 GKGSCFTVNLPWKHSS 1552 >gi|148254486|ref|YP_001239071.1| multi-sensor signal transduction histidine kinase [Bradyrhizobium sp. BTAi1] gi|146406659|gb|ABQ35165.1| multi-sensor signal transduction histidine kinase [Bradyrhizobium sp. BTAi1] Length = 587 Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 99/264 (37%), Positives = 156/264 (59%), Gaps = 8/264 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M D+++ K ++ L A+ AE+ + K+ FLA +SHE+RTPL AIIGFSE++ ++ Sbjct: 302 VMRDVTDRKLQEQALELARSAAERADAAKTRFLATMSHELRTPLNAIIGFSEMLMQEQAL 361 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L R EYA I+ SG +L +VN +LD+SK+ESG L EP + A+ +L+ Sbjct: 362 VLNAARRREYAQLINDSGQHLLSVVNGILDMSKMESGNFELTPEPFAPRAALINCCNLLA 421 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 L A E + + +++P I D R+ KQI +N++SNAI FT GG++++S + Sbjct: 422 LRARENGVDLSADVPHDLPTITGDPRAFKQIVINLVSNAIKFTERGGRVMVSAA-IEGPQ 480 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 ++LR+ DTGVG+ +L++ PF Q + Q R EGTGLGL + K++V+ + G+ I S Sbjct: 481 LLLRITDTGVGIAADDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVNLHGGEMSIES 540 Query: 797 TPAKGTLIEIIFPLYDTSHPHDCI 820 +GT + I P+ DC+ Sbjct: 541 KLDEGTTVSIALPI-------DCV 557 >gi|154251104|ref|YP_001411928.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154155054|gb|ABS62271.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 661 Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 108/252 (42%), Positives = 156/252 (61%), Gaps = 3/252 (1%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DISE K+ + +L A++ AE S KS FLA +SHE+RTPL AIIGFSE+++ Q FG LG Sbjct: 386 DISERKRHEMELLDARERAETASRTKSRFLANMSHELRTPLNAIIGFSEILRMQMFGALG 445 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +PRY EYA I+ SG L+LD+++D+LD+SKIE+GK LH E V + + LV+ A Sbjct: 446 HPRYTEYAQLINESGALLLDLISDILDMSKIEAGKYELHPETVDAAALIESCVRLVRGRA 505 Query: 680 NEKRILI--RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 E I + + A ++AD R++KQI LN+LSN+ FTP+GG+I ++ T T E + Sbjct: 506 EENGIHLVKKIQCAELGGTLVADERALKQIMLNLLSNSAKFTPAGGRISVALTET-EETI 564 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V DTG G+ ++ + +PF QI + EGTGLGL L +++ + + G I S Sbjct: 565 CFAVADTGRGIPADQIARLGQPFEQIATDAALSKEGTGLGLALVRSLAELHGGSMAIDSE 624 Query: 798 PAKGTLIEIIFP 809 GT + + P Sbjct: 625 LGVGTTVTVTLP 636 >gi|27378251|ref|NP_769780.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] gi|27351398|dbj|BAC48405.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] Length = 776 Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 89/240 (37%), Positives = 149/240 (62%), Gaps = 2/240 (0%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 K K AE+ + KS FLA +SHE+RTPL AIIGFSE++ + FG LG+ +Y EY Sbjct: 525 KYQREKTRAEEANQTKSKFLANMSHELRTPLNAIIGFSEIMGSGLFGELGSEKYQEYCQD 584 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG+ +L+++ND+LD+SKIE+G+M L E + L ++E++ +V A +K + + Sbjct: 585 ILTSGHYLLEVINDILDMSKIEAGRMKLDMEELDLARTLAESLRVVSGRAQDKHLTLDAD 644 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 +I ++AD R+ KQI +N+LSNA+ FTP GG+I++ + ++ ++L + DTG+G+ Sbjct: 645 IEKSIS-VVADRRATKQIIVNLLSNAVKFTPDGGRIVVRSRQL-DDRIVLMIADTGIGIA 702 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + L + +PF Q+ + G+GLGL +A+++ + G + S GT++ + P Sbjct: 703 PHSLARLGRPFEQVESQLTKTYHGSGLGLAIARSLAQLHGGSMRLRSKIDVGTVVRVTLP 762 >gi|315497659|ref|YP_004086463.1| integral membrane sensor signal transduction histidine kinase [Asticcacaulis excentricus CB 48] gi|315415671|gb|ADU12312.1| integral membrane sensor signal transduction histidine kinase [Asticcacaulis excentricus CB 48] Length = 598 Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 97/246 (39%), Positives = 148/246 (60%), Gaps = 2/246 (0%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D S +++L A++ A+ + KS FLA +SHE+RTPL A+IGFS++++ Q FG Sbjct: 292 VLSDASLQHAREDELETARQEAQALNEGKSRFLAGMSHELRTPLNAVIGFSDIMRQQMFG 351 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL +Y EY+ I SG VLD+VND+LD+SKIE+ + L E E VS A+ L+ Sbjct: 352 PLTG-KYAEYSQLIWESGQHVLDLVNDVLDMSKIEASRYELSLERFDAREPVSAALRLIL 410 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A+EK + +++ + AD R++KQ+ LN+LSNA+ FTP GG I + + T Sbjct: 411 ATAHEKGVTVKSVLPPTPLEVTADKRAIKQMCLNLLSNAVKFTPQGGTITLMLSETGQHS 470 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + +++ DTGVG+ +L++ KP+ Q +Q R GTGLGL L +A+ + G+ I S Sbjct: 471 IDIQITDTGVGIAPEDLKRLGKPYEQSGPMEQ-RAMGTGLGLSLVQALAGLHRGRMTIES 529 Query: 797 TPAKGT 802 GT Sbjct: 530 ELGVGT 535 >gi|302382311|ref|YP_003818134.1| integral membrane sensor signal transduction histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302192939|gb|ADL00511.1| integral membrane sensor signal transduction histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 580 Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 94/229 (41%), Positives = 150/229 (65%), Gaps = 3/229 (1%) Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 +++ K+ FLA +SHE+RTPL A++GFS+V++ + FGPL +P+Y EYA+ I +G+ +LD+ Sbjct: 325 QNAGKTRFLANMSHELRTPLNAVLGFSDVMRQRLFGPL-SPKYAEYADNIHEAGSHLLDL 383 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700 + D+LD+SKIE+ + L EP E VS A++LV+ A + + + + ++ + AD Sbjct: 384 IGDVLDVSKIEAERYELSREPFDAREVVSAAVALVRGTATDGGVTLASLLPDDPLAVEAD 443 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 R++KQI LN+LSNAI FTPSGG + + T T + + V DTGVG+ +L++ +PF Sbjct: 444 RRALKQITLNLLSNAIKFTPSGGSVTL-TLETIGPYLEMVVADTGVGIAARDLKRLGRPF 502 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q + Q R +GTGLGL L +A+ + + G+ I ST +GT + + P Sbjct: 503 EQAGEADQ-RAKGTGLGLSLVRALAELHGGRMSIESTLGEGTAVTVRLP 550 >gi|332706440|ref|ZP_08426501.1| PAS domain S-box protein [Lyngbya majuscula 3L] gi|332354324|gb|EGJ33803.1| PAS domain S-box protein [Lyngbya majuscula 3L] Length = 1299 Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 120/392 (30%), Positives = 207/392 (52%), Gaps = 22/392 (5%) Query: 440 TRINKRKMEIEVMQ-LCSILEATSDGIAIINREGIILSTNRAVSKLFGY--PVEDILRKP 496 T I++RK E ++ + LEA +DGIA++N G N+ +LFGY P E + R+ Sbjct: 625 TDISERKKAEEALKSQLTALEAATDGIALVNPAGEYFYLNQTHLELFGYTQPNELVGRQW 684 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL---GSTKEEKLLSLRIIIKKLPFSSC 553 ++ + + ++ + + E + GST E+ SL ++ C Sbjct: 685 HIIYPPEEIERIEKSVFPQLFKTG-KWSGEATAVRKDGSTFAEEF-SLTLLEDGGLIRVC 742 Query: 554 YSLTMHDISEWKQEKN--KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 +T +E + ++N +L+ A E+ + K +FLA +SHE+RTPL AI+G SE ++ Sbjct: 743 RDITQRKQAEEQMQQNHQRLAMANAQLERATRLKDEFLASMSHELRTPLNAILGLSEALQ 802 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + +G + + R + + I SG +L+++NDLLD++KIESGKM LH VSL + + + Sbjct: 803 EEVYGSITD-RQRKSLSTIQGSGQHLLELINDLLDLAKIESGKMELHICAVSLQKLCNSS 861 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + V+ A+ K I + + + I D R ++Q+ +N+LSNA+ FTP+GG +I+ Sbjct: 862 LMFVRNQAHHKNIKLTSQVTEKLWEIEVDERRIRQVLINLLSNAVKFTPTGGSVILKA-- 919 Query: 732 TSNEEVILR------VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 EE +LR V DTG+G+ + K + F QI + R GTGLGL L + + Sbjct: 920 ---EEDLLRNTICFSVMDTGIGIAKENMPKLFQSFVQIDSRLSRRYAGTGLGLALVQRTI 976 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 + + G+ + S +G+ + P+ + P+ Sbjct: 977 EIHGGRVDVESEVGQGSCFRVTLPIKQSGEPN 1008 >gi|254293651|ref|YP_003059674.1| histidine kinase [Hirschia baltica ATCC 49814] gi|254042182|gb|ACT58977.1| histidine kinase [Hirschia baltica ATCC 49814] Length = 752 Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 97/241 (40%), Positives = 147/241 (60%), Gaps = 1/241 (0%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 K + K AEK S KS FLA +SHE+RTPL AI GFSE++ + +GPLG+ RYI YA Sbjct: 501 KYAEEKTKAEKASQAKSVFLANMSHELRTPLNAINGFSEMLIKEIYGPLGDERYIGYAED 560 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG +LD++ND+LD++KIE+GKM++ + EAV A+ +++ A +K I + + Sbjct: 561 ILSSGQHLLDMINDILDMAKIEAGKMSISTREIDPVEAVDSAVRMIRRRAADKDIDLNLT 620 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 ++IP I D R++KQ+ LN++SNAI FT GG I IS N V + V D G+G+ Sbjct: 621 VKDDIPDIEGDHRAIKQMVLNLVSNAIKFTDPGGYINISVVK-ENAFVRVSVADNGIGIP 679 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ + +PF Q + +G+GLGL L K+ + + G+ I S +GT + + P Sbjct: 680 KQDIPRLAQPFEQSSADENRNSKGSGLGLSLTKSFAEMHGGRLEIESEFGEGTTVSFLLP 739 Query: 810 L 810 + Sbjct: 740 V 740 >gi|197106173|ref|YP_002131550.1| sensor histidine kinase DivJ [Phenylobacterium zucineum HLK1] gi|196479593|gb|ACG79121.1| sensor histidine kinase DivJ [Phenylobacterium zucineum HLK1] Length = 553 Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 98/270 (36%), Positives = 162/270 (60%), Gaps = 4/270 (1%) Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 L + ++L + ++ + D + +++L A+ AE++++ KS FLA +SHE+RTPL Sbjct: 271 LEVSFRRLGANRIFA-AVRDARAQRAREHELEKARISAEQQNAGKSRFLANMSHELRTPL 329 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 AI+GFS++++ + FGP+G+ RY EYA I SG+ +L+++ND+LD+SKIE+ + L E Sbjct: 330 NAIMGFSDIMRQRLFGPMGD-RYGEYAELIHESGSHLLELINDVLDMSKIEAERFELARE 388 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 +AV + L++ A + +R AD R+VKQI LN++SNA+ FTP Sbjct: 389 DFDARDAVGAVLRLMRGQAERAGVTLRAVMPPEPLEAEADRRAVKQITLNLISNALKFTP 448 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 GG + + T + E + L V D+GVG+ +LE+ +PF Q ++QQ R G+GLGL L Sbjct: 449 RGGTVTV-TAQGAGETLELIVADSGVGIAPADLERLGRPFEQAGDAQQ-RAAGSGLGLSL 506 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +A + G+ I S +GT + + P+ Sbjct: 507 VRAFAALHGGEMAIESGVGEGTTVTVRMPV 536 >gi|239787541|emb|CAX84010.1| Sensor protein [uncultured bacterium] Length = 834 Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 142/240 (59%), Gaps = 1/240 (0%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK AE + K++FLA +SHE+RTPL +IIGFS+++ NQ FGP+G P Y+EYA I Sbjct: 587 LRAAKDNAEVANRAKTEFLANMSHELRTPLNSIIGFSDILVNQSFGPMGVPEYVEYARDI 646 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + +G+ +L ++ND+LD+S+IE ++L+ + + + LV A ++ + Sbjct: 647 NSAGSHLLSLINDILDVSRIEVEALSLNEQRIDAAHMANSCQRLVLDRAKRAKLNLVLDM 706 Query: 691 ANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 P L AD R VKQ+ LN+L+N+I FT GG + + + V DTG+G+ Sbjct: 707 PKQFPAALYADERRVKQVLLNLLANSIKFTEPGGTVTLKGMLDEEGRFVFAVADTGIGIA 766 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++E AM FGQ+ +S R EG GLGLPL+K +V+ + G + S P GT + I FP Sbjct: 767 PEDIEAAMSTFGQVDSSFTRRYEGAGLGLPLSKKLVELHGGGLSLESQPGVGTTVTIRFP 826 >gi|163792404|ref|ZP_02186381.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha proteobacterium BAL199] gi|159182109|gb|EDP66618.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha proteobacterium BAL199] Length = 374 Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 106/275 (38%), Positives = 161/275 (58%), Gaps = 8/275 (2%) Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 K+ ++L LR + +L S + L D +E +Q + L AK AE + KSDFLA VS Sbjct: 102 KDGQILLLREV--RLEDGSTF-LINSDQTELRQRETDLERAKNEAETANRAKSDFLANVS 158 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HE+RTPL AI+GFSE+IK+ L + RY +YA I +SG +L ++ND+LD++ IESG Sbjct: 159 HELRTPLNAILGFSEIIKSD---TLDSGRYPDYAAAIHKSGQHLLSLINDILDLNAIESG 215 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713 + + E ++L + + +V+ A + I +RT+ + P +L D R+++Q LN+LS Sbjct: 216 RFVISPERLNLHALTTSIVEMVRPIAQDAGIRLRTTVPKDFPAVLLDRRAMEQCLLNLLS 275 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 NAI F+ GG + +S V + V DTGVGM + ++ +PF P + G Sbjct: 276 NAIKFSHRGGAVDLSVGAAPTGGVCIAVVDTGVGMASETIKAIGQPFAS-PGG-HVDKRG 333 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GLGL + K++V A G+ I STP +GT EI+F Sbjct: 334 AGLGLAITKSIVGAMKGELEIQSTPGQGTRAEILF 368 >gi|163793613|ref|ZP_02187588.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159181415|gb|EDP65930.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 649 Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 99/260 (38%), Positives = 151/260 (58%), Gaps = 5/260 (1%) Query: 554 YSLTMHDISEWKQE----KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 Y T D +E+ E + +L A + AE + KS FLA VSHE+RTPL AIIGFS++ Sbjct: 373 YRGTAADETEFSTELTRAQRELQEALRQAEIANRSKSLFLATVSHELRTPLNAIIGFSDL 432 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + FGPLG+ RY YA+ I SG +L ++ D+LD+S+IE G++ L V L + Sbjct: 433 LAQKVFGPLGDERYEGYAHDIQTSGQHLLSLIEDVLDLSRIEMGQIRLRLGLVDLPIEIQ 492 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 A+++V+ ++ I+ A P + AD R ++QI +N++SNA FTP G+I++ T Sbjct: 493 AAVAMVRARRGQEIASIQIEVAEGFPTLNADARLIRQILINLISNAAKFTPPSGRILV-T 551 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 ++ + + V D G+G+ + K ++PF Q N R EG GLGLPL KA V+ + Sbjct: 552 AQVVDDGISIAVIDDGIGIDPADHAKVLRPFEQADNRLSRRYEGVGLGLPLTKAFVEVHN 611 Query: 790 GKFYIFSTPAKGTLIEIIFP 809 G+ + S +GT I I P Sbjct: 612 GQLQLESAIGEGTTITIRLP 631 >gi|110633906|ref|YP_674114.1| periplasmic sensor signal transduction histidine kinase [Mesorhizobium sp. BNC1] gi|110284890|gb|ABG62949.1| periplasmic sensor signal transduction histidine kinase [Chelativorans sp. BNC1] Length = 505 Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 94/249 (37%), Positives = 152/249 (61%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E + K A+ AE+ + KS FLA +SHE+RTPL AI+GFSEV+ + GP+ N Sbjct: 236 IAELETAKAVSDEARHRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMAKEVLGPVQN 295 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 Y EYA + +SG +L+++N++LD+S+IE+G+ L+ EP++L + V E ++ L Sbjct: 296 VTYREYAKDVHQSGQHLLELINEILDLSRIEAGRYQLNEEPLALADIVHECCRMMDLKLK 355 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K I + F ++ ++AD R+V+QI+LN+LSNA+ FTPSGG+I + TS + Sbjct: 356 AKDIKLVQQFEPSLLNLMADERAVRQISLNLLSNAVKFTPSGGEIRVRVGWTSGGGQYIS 415 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 + D G G++ E+ + FGQ + + +GTGLGLP+ + + + G + S + Sbjct: 416 ICDNGPGISEEEMPLVLSAFGQGSVAIKSAEQGTGLGLPIVQGLTHLHGGLLRLKSKLRE 475 Query: 801 GTLIEIIFP 809 GT+ +IFP Sbjct: 476 GTVATVIFP 484 >gi|294496151|ref|YP_003542644.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292667150|gb|ADE36999.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 732 Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 98/251 (39%), Positives = 156/251 (62%), Gaps = 3/251 (1%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K+ + + AK +AE + KS FLA +SHE+RTPL +IIGFS+V+ + FG L Sbjct: 481 DITEKKEAEKAIIEAKGMAEAANQTKSQFLANMSHELRTPLNSIIGFSDVLLEEAFGKL- 539 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N + +Y + I+ SG+ +LDI+ND+LD+SKIE+GKM L+ E L+E +SE + ++ Sbjct: 540 NEKQKKYTHNINTSGHHLLDIINDILDLSKIEAGKMELNPENFGLEEIISELKNTLEPLV 599 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 +K++++ + P + AD +KQ+ N+LSNAI FTP G+I I EE+ + Sbjct: 600 KKKQLILDLDTSLEYP-VYADKLKIKQVLYNLLSNAIKFTPEKGKIAID-IDCGEEEITI 657 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V D+G+G+ E +K +PF QI + + +GTGLGL L K +++ + G+ ++ S Sbjct: 658 SVSDSGIGIPPEEQDKLFQPFRQIDSDSNRQYQGTGLGLALVKNIIEMHGGQIWVESEAG 717 Query: 800 KGTLIEIIFPL 810 KG+ + PL Sbjct: 718 KGSTFKFTLPL 728 >gi|254472050|ref|ZP_05085451.1| multi-sensor signal transduction histidine kinase [Pseudovibrio sp. JE062] gi|211959252|gb|EEA94451.1| multi-sensor signal transduction histidine kinase [Pseudovibrio sp. JE062] Length = 744 Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 95/243 (39%), Positives = 147/243 (60%), Gaps = 6/243 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 K + K AE + KS+FLA +SHE+RTPL AIIGFSE++ FG LG+ +Y EY Sbjct: 487 KYADEKTRAEDANQAKSEFLANISHELRTPLNAIIGFSEIMDQGMFGDLGSDKYKEYCKD 546 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SGN +L+++ND+LD+SKIE+G++ L E V + + V +A ++ A EK I + Sbjct: 547 IHSSGNYLLNVINDILDMSKIEAGRIELSVEDVQIQQIVQDAARIISATAAEKNIKV--- 603 Query: 690 FANNIP--RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 N+P + AD R+VKQI LN+L+N++ FTP G++ +S L++ D G+G Sbjct: 604 VNENLPHMHLQADRRAVKQILLNLLANSVKFTPENGEVRVSARKV-GAFAELKITDNGIG 662 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + ++++ KPF Q+ N +G+GLGL +A+++ + + G I S KGT + I Sbjct: 663 IAKKDIDRLAKPFVQVENQFTKTHKGSGLGLAIARSLSELHGGYMEIDSEVGKGTEVTIK 722 Query: 808 FPL 810 PL Sbjct: 723 LPL 725 >gi|20091132|ref|NP_617207.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19916235|gb|AAM05687.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 572 Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 123/355 (34%), Positives = 192/355 (54%), Gaps = 36/355 (10%) Query: 472 GIILSTNRAVSKLFGYPVEDIL-----------RKPFTVFLEQNTPSVMNH-YLTEILSL 519 G IL N A +GYP E +L ++ LEQ +NH Y T LS Sbjct: 216 GNILDANSAACAFYGYPREKMLGLNIADINILPKEQILEELEQEKSRDINHFYFTHRLSN 275 Query: 520 DLRQTLEK----ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 + + +E+ I +G KKL ++ + DI++ ++ +++L AK Sbjct: 276 GVLRDVERYSYPILMGG-------------KKLLYA-----IVSDITDNRKMQSELVRAK 317 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 AE S KS+FLA +SHE+RTPL +IIGFS+++ Q FGPL N + + Y N I SGN Sbjct: 318 MEAEIASKAKSEFLASMSHELRTPLNSIIGFSDMLLTQNFGPL-NKKQLRYVNNISVSGN 376 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L ++N +LD+SK+E+GKM L E S+ +++SE L+ A++K I I + + Sbjct: 377 HLLKLINGILDLSKVEAGKMELKVEEFSVLDSISEVKVLLTPLASKKDIQILSVVDKELT 436 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 I AD KQI N++ NAI FT G +I+ ++ I+ V+DTG+G++ ++K Sbjct: 437 TIRADRTKFKQILYNLVDNAIKFTHEDGFVIVDARVEGDQAKIM-VKDTGIGISKAGVKK 495 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +PF Q+ NS+ + +GTGLGL L K V+ + GK ++ S +G+ PL Sbjct: 496 IFQPFTQLENSEYGKQKGTGLGLSLVKKFVEMHTGKIWVESEFGEGSKFIFTIPL 550 >gi|91772668|ref|YP_565360.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711683|gb|ABE51610.1| pleC (non-motile and phage-resistance protein) -like multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 456 Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 114/354 (32%), Positives = 185/354 (52%), Gaps = 5/354 (1%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +I + +DGI +I+ G + N K GY +++L+ + + P + + Sbjct: 100 TIFDKANDGIYLIDLHGRFIDVNAMACKQTGYSRDEMLQMAYK---DMGFPEIDYKKQVK 156 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 L + E ++ +R I + + DI+E K+ + + AK Sbjct: 157 ELYKKGYTSFESASILKDDSTAYGQMRSQIIQYGGKTAILSIARDITERKKAEEAILEAK 216 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 AE + KS+FLA +SHE+RTPL +IIGFS+V+ N+ GPL N +Y + + R+G Sbjct: 217 IEAESANRAKSEFLANMSHELRTPLNSIIGFSDVLYNESHGPL-NEYQKKYTSNVLRNGK 275 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +LDI+ND+L IS IE+G M LH + +A+ E SL+ L A+EK I + + +P Sbjct: 276 HLLDIINDILSISNIETGTMELHINEFIVSDAIDEVESLMILIASEKDIDLTCNIDIGMP 335 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 I D+ KQI N++ NAI FT GG + I S++ V + V+D+G+G++ + +K Sbjct: 336 TIKTDMIKFKQILYNLVHNAIKFTDQGGSVTIGGK-ISDDLVHISVKDSGIGVSPEDQDK 394 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 PF Q+ +S + GTGLGL L K V+ + G+ ++ S KG+ I P Sbjct: 395 LFNPFFQLDSSNARKYGGTGLGLALVKKFVEMHGGEIWVESEVGKGSTFTFIIP 448 >gi|16125315|ref|NP_419879.1| sensor histidine kinase DivJ [Caulobacter crescentus CB15] gi|13637937|sp|Q03228|DIVJ_CAUCR RecName: Full=Histidine protein kinase divJ gi|13422363|gb|AAK23047.1| sensor histidine kinase DivJ [Caulobacter crescentus CB15] Length = 597 Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 95/254 (37%), Positives = 154/254 (60%), Gaps = 3/254 (1%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DI+ + ++ L A+ AE ++ ++ FLA +SHE+RTPL AI+GFS++++ + FG Sbjct: 301 VLRDITVERHREHALDQARIDAEALAAGRARFLANMSHELRTPLNAIMGFSDIMRARMFG 360 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + RY EYA I SG +LD++ND+LD+SKIE+ + L EAV A+ L++ Sbjct: 361 PLSD-RYAEYAELIHESGGHLLDLINDVLDMSKIEAERFELQRGVFDAREAVQAAMRLLR 419 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 + ++ + +R + AD R++KQI LN++SNA+ FTP GGQ+ + T H + Sbjct: 420 VQSDTAGVQLRGVLPPGELEVDADRRALKQIVLNLVSNALKFTPRGGQVTV-TAHGYDGV 478 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + V DTGVG++ +LE+ +P+ Q ++Q R GTGLGL L +A + G+ I S Sbjct: 479 LEIVVADTGVGISPEDLERLGRPYEQAGGAEQ-RARGTGLGLSLVRAFAQLHGGEMVIES 537 Query: 797 TPAKGTLIEIIFPL 810 GT + + P+ Sbjct: 538 RLGAGTTVSVRLPV 551 >gi|221234053|ref|YP_002516489.1| histidine protein kinase DivJ [Caulobacter crescentus NA1000] gi|220963225|gb|ACL94581.1| histidine protein kinase DivJ [Caulobacter crescentus NA1000] Length = 600 Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 95/254 (37%), Positives = 154/254 (60%), Gaps = 3/254 (1%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DI+ + ++ L A+ AE ++ ++ FLA +SHE+RTPL AI+GFS++++ + FG Sbjct: 304 VLRDITVERHREHALDQARIDAEALAAGRARFLANMSHELRTPLNAIMGFSDIMRARMFG 363 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + RY EYA I SG +LD++ND+LD+SKIE+ + L EAV A+ L++ Sbjct: 364 PLSD-RYAEYAELIHESGGHLLDLINDVLDMSKIEAERFELQRGVFDAREAVQAAMRLLR 422 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 + ++ + +R + AD R++KQI LN++SNA+ FTP GGQ+ + T H + Sbjct: 423 VQSDTAGVQLRGVLPPGELEVDADRRALKQIVLNLVSNALKFTPRGGQVTV-TAHGYDGV 481 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + V DTGVG++ +LE+ +P+ Q ++Q R GTGLGL L +A + G+ I S Sbjct: 482 LEIVVADTGVGISPEDLERLGRPYEQAGGAEQ-RARGTGLGLSLVRAFAQLHGGEMVIES 540 Query: 797 TPAKGTLIEIIFPL 810 GT + + P+ Sbjct: 541 RLGAGTTVSVRLPV 554 >gi|154253913|ref|YP_001414737.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154157863|gb|ABS65080.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 704 Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 94/245 (38%), Positives = 147/245 (60%), Gaps = 1/245 (0%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + ++L+ A AE+ S KS+FLA +SHE+RTPL AIIGFSE +K + FGPLG+ +Y Sbjct: 445 EARADELTRALMAAEQASLAKSEFLATMSHELRTPLNAIIGFSETMKLEVFGPLGHGKYA 504 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EYA I+ SG +LD+V+D+LDIS++ESG L+ E V ++ ++ A + + Sbjct: 505 EYAKDINNSGTHLLDLVSDILDISRVESGTDALNEEEVCIESVARAVLAATAAQAGKAEV 564 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + R +P + AD R ++QI N++ NAI F GG + ++ + I V DT Sbjct: 565 VCRLDADAGLPPVFADERKIRQILTNLVGNAIKFNVPGGTVAVTLARDESGYRI-AVADT 623 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ ++ KA+ FGQ+ + + + EG GLGLP+ + + + + G F I STP +GT + Sbjct: 624 GIGIVAEDIPKALARFGQLEDQFRRKYEGLGLGLPIVQVLTEQHGGHFAIESTPGRGTTV 683 Query: 805 EIIFP 809 I P Sbjct: 684 TITLP 688 >gi|16331796|ref|NP_442524.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803] gi|1001756|dbj|BAA10594.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803] Length = 806 Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 93/262 (35%), Positives = 157/262 (59%), Gaps = 10/262 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI+E K+ + +L + KI K + K +FLA +SHE+RTPL +I+G E ++NQ +G Sbjct: 390 TIADITEIKKAEEQLKLSNKILAKATQLKDEFLANMSHELRTPLNSILGMIETLQNQVYG 449 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL N + ++ ++ SG +L ++ND+LD+SKIE+G+M+L P S+ V+ +++ VQ Sbjct: 450 PL-NGKQVQSLEIVENSGRHLLSLINDILDLSKIEAGRMDLDLNPTSVSALVNHSLTFVQ 508 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST------- 729 +A +K+I + + N+P +L D R + Q+ +N+L+NAI FTP GG++++ Sbjct: 509 QFAIQKQINLSSEIIPNLPDVLVDKRRLCQVLINLLNNAIKFTPEGGKVVVQADLIKEQG 568 Query: 730 --THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 S ++ V DTG+G+ L +PF QI ++ R +GTGLGL L K +V+ Sbjct: 569 KENSQSPPQLSFTVFDTGIGIEADRLNNIFEPFVQIDSALNRRYDGTGLGLSLVKKIVEL 628 Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809 + G + S +G+ +I P Sbjct: 629 HGGSVTVTSKLNEGSRFKITIP 650 >gi|227821363|ref|YP_002825333.1| two component sensor kinase [Sinorhizobium fredii NGR234] gi|227340362|gb|ACP24580.1| two component sensor kinase [Sinorhizobium fredii NGR234] Length = 775 Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 90/235 (38%), Positives = 144/235 (61%), Gaps = 2/235 (0%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K+ AE + KS+FLA +SHE+RTPL AI+GFSE+++NQ FGPLG+ +Y EY+ I SG Sbjct: 540 KERAEAANRAKSEFLANMSHELRTPLNAILGFSEILQNQMFGPLGSEKYDEYSRDIHESG 599 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L+++ND+LD+SKIE+G M + E + L + E + + A +K I + ++ + Sbjct: 600 KHLLNVINDILDMSKIEAGHMRITRERIDLAPLIEETLRFTTIPAEQKNIRVVQEISSGL 659 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 + AD R++KQ+ LN+LSNA+ FT GG+I + V L + D+G+G+ Y L+ Sbjct: 660 T-MFADRRAMKQVLLNLLSNAVKFTNEGGRISLRARKVRG-AVTLTIADSGIGIPRYALQ 717 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K PF Q+ + G+GLGL +++++ + G+ I S GT+I + P Sbjct: 718 KIGHPFEQVQSQYAKSKGGSGLGLAISRSLTRLHGGRMKIHSAEKVGTIISVRIP 772 >gi|46204504|ref|ZP_00049895.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 349 Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 92/218 (42%), Positives = 138/218 (63%) Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHE+RTPL AI+GFSEV+KN+ FG P Y EYAN I SG +L+++N++LD+S+IE Sbjct: 1 MSHELRTPLNAILGFSEVMKNEVFGVHTAPAYREYANDIHDSGMHLLNLINEILDLSRIE 60 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +G+ +L E V L V E ++ L A K + +++PR+ AD R+++QI LN+ Sbjct: 61 AGRYDLTEEAVQLAHTVEECRHMMTLRARSKGQTFTSLIDDSLPRLWADERALRQIVLNL 120 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 LSNA+ FTP GG+I I TS+ + V+D+G G+ EL M FG+ + + Sbjct: 121 LSNAVKFTPPGGEITIKVGWTSSGGQYVSVKDSGPGIPEDELGTVMSSFGRGSLAIKTAE 180 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +G+GLGLP+ K +VD + G F + S P +GT + + FP Sbjct: 181 QGSGLGLPIVKGLVDLHGGGFQLKSKPREGTEVIVTFP 218 >gi|300021814|ref|YP_003754425.1| histidine kinase [Hyphomicrobium denitrificans ATCC 51888] gi|299523635|gb|ADJ22104.1| histidine kinase [Hyphomicrobium denitrificans ATCC 51888] Length = 294 Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 91/242 (37%), Positives = 147/242 (60%), Gaps = 1/242 (0%) Query: 573 HAKKI-AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 H+ +I E S KS+F+A +SHE++TPL +IGFS+++ + L + +EYA I+ Sbjct: 36 HSARIETELASKVKSEFIANMSHELKTPLNTVIGFSKLLTQHQERRLPDKEIVEYATLIN 95 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 + +L ++ND+LDISK++SGK + ++L + ++++I + I + + A Sbjct: 96 DAAGHLLSVINDILDISKLQSGKYAIDSREINLRDILADSIDAFHHQSRVGDIDVDVAIA 155 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 ++P I D +KQI N+LSNAI FTP+ G + + T++ I+ +RD+GVGM+ Sbjct: 156 ADLPLIRGDAVKLKQIFTNVLSNAIKFTPADGTVAVKAQRTADHGAIVAIRDSGVGMSPD 215 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 E++ AM PFGQ+ + EG GLGLP+AKA+V+ + G YI S +GT + I FP Sbjct: 216 EIDVAMAPFGQVDGGRSRWREGAGLGLPIAKALVELHGGALYIASQQNEGTEVVITFPGR 275 Query: 812 DT 813 DT Sbjct: 276 DT 277 >gi|146339710|ref|YP_001204758.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146192516|emb|CAL76521.1| Putative sensor histidine kinase with a PAS domain [Bradyrhizobium sp. ORS278] Length = 610 Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 97/254 (38%), Positives = 150/254 (59%), Gaps = 1/254 (0%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M D+++ K ++ L A+ AE+ + K+ FLA +SHE+RTPL AIIGFSE++ ++ Sbjct: 325 VMRDVTDRKLQEQALELARSAAERADAAKTRFLATMSHELRTPLNAIIGFSEMLMQEQVL 384 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L R EYA I+ SG +L +VN +LD+SK+ESG L EP + A+ +L+ Sbjct: 385 VLNAARRREYAQLINDSGQHLLSVVNGILDMSKMESGHFELTPEPFAPRTALFNCCNLLA 444 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 L A E + + +++P I D R+ KQI +N++SNAI FT GG++ +S Sbjct: 445 LRARENGVDLAADAPHDLPVITGDPRAFKQIVINLVSNAIKFTERGGRVTVS-AGVDGAR 503 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 ++LR+ DTGVG+ +L++ PF Q + Q R EGTGLGL + K++V + G+ I S Sbjct: 504 LLLRITDTGVGIAADDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVTLHGGEMSIES 563 Query: 797 TPAKGTLIEIIFPL 810 +GT + I P+ Sbjct: 564 KLDEGTTVTIALPI 577 >gi|254420242|ref|ZP_05033966.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Brevundimonas sp. BAL3] gi|196186419|gb|EDX81395.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Brevundimonas sp. BAL3] Length = 549 Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 93/240 (38%), Positives = 155/240 (64%), Gaps = 3/240 (1%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A+ AE +S+ K+ FLA +SHE+RTPL A+IGF+++++ + FGPL + RY YA+ I Sbjct: 293 LESARAEAEAQSAGKTRFLANMSHELRTPLNAVIGFADIMRQRLFGPLPD-RYAGYADSI 351 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 ++G +LD++ND+LD+SKIE+ + L E + + VS A++LV++ A++K + + Sbjct: 352 HQAGGHLLDLINDVLDLSKIEAERYELALESLDARDPVSAAVALVRVQADDKGVDLAPVL 411 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + + AD R++KQ+ALN+LSNA+ FTP+GG + + T + L V DTGVG+ Sbjct: 412 PSIPLTVQADARALKQMALNLLSNAVKFTPTGGSVTL-TLDGVGPYLELVVSDTGVGIAP 470 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +L + +PF Q + Q + +GTGLGL L +++ + + G+ I ST +GT + + P+ Sbjct: 471 EDLRRVGRPFEQAGGADQ-KAQGTGLGLSLVRSLTELHGGRMSIDSTLGEGTAVMVRLPV 529 >gi|13476354|ref|NP_107924.1| two component histidine sensor kinase [Mesorhizobium loti MAFF303099] gi|14027115|dbj|BAB54069.1| two component histidine sensor kinase [Mesorhizobium loti MAFF303099] Length = 541 Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 100/260 (38%), Positives = 147/260 (56%), Gaps = 1/260 (0%) Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 S ++L + + E + + +L+ A + A K FLA VSHE+RTPL AIIGFS+++ Sbjct: 250 SDVFTLVLRENDETARLREELAQANETAAAAEVAKGRFLAVVSHELRTPLNAIIGFSDML 309 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 ++ FG +PR EY + SG +L +V +LD+S+IESG EP EAV Sbjct: 310 LHEMFGAFKDPRQKEYVTLVRDSGQHLLAVVTSILDVSRIESGAYTADPEPFRFMEAVDM 369 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 S+++L A K I ++T A + I AD R+V+Q+ +N++SNAI FTP GG +++ Sbjct: 370 CQSMMRLQAQAKNIDLQTQIAPDAGDINADRRAVQQMLINLVSNAIKFTPDGGDVVVGAK 429 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + VRDTG+G+ + KPF QI N R EGTGLGL L K +V + G Sbjct: 430 RIGS-RLHFWVRDTGIGIAEEDFANLGKPFTQIQNDYTRRFEGTGLGLSLVKGLVALHEG 488 Query: 791 KFYIFSTPAKGTLIEIIFPL 810 I S P +GT + I P+ Sbjct: 489 TMSIESMPGEGTTVTISLPV 508 >gi|312113732|ref|YP_004011328.1| histidine kinase [Rhodomicrobium vannielii ATCC 17100] gi|311218861|gb|ADP70229.1| histidine kinase [Rhodomicrobium vannielii ATCC 17100] Length = 630 Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 90/235 (38%), Positives = 146/235 (62%), Gaps = 2/235 (0%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE + KS+FLA VSHE+RTPL AIIGFSE++++ GP+GNP+Y Y I SG + Sbjct: 388 AEAANQAKSEFLANVSHELRTPLNAIIGFSEMMRDGVLGPIGNPKYESYVKDIHNSGRYL 447 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L+++ND+LD+SKIE+G+ L E ++ + E +S+V A E + + S +I + Sbjct: 448 LEMINDILDMSKIEAGRWTLSPEWFTMSDVFQECLSVVSPVAMEGNVELSQSGNTSIS-L 506 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D R++KQ+ +N+LSNA+ FTP G++ + + + + + DTGVG+ ++L + Sbjct: 507 YGDRRALKQVLINLLSNAVKFTPQDGKVSLR-AYRYRGSIRIAIADTGVGIPKHDLGRLG 565 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 +PF Q+ N +GTGLGL +++++V+ + GK I S +GT + I P+ D Sbjct: 566 RPFEQVSNQLTKGHKGTGLGLAISRSLVEMHGGKLDIKSRVGEGTTVTCILPVQD 620 >gi|182678851|ref|YP_001832997.1| response regulator receiver sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634734|gb|ACB95508.1| response regulator receiver sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 389 Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 98/250 (39%), Positives = 147/250 (58%), Gaps = 4/250 (1%) Query: 564 WKQEKNK----LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 + EK++ L AK+ AE + KS+FLA +SHE+RTPL AIIGFS +I + GPL Sbjct: 127 LRMEKSRMIEALRLAKEGAEAANQAKSNFLATISHELRTPLNAIIGFSNLILMELMGPLS 186 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N RY EY I+ SG +L I+ND+LD++K E+G+ L + +A+ L+ A Sbjct: 187 NERYREYLRDINASGEHLLSIINDILDLTKAEAGQTELFESVIHPRDAIIPVERLLMPKA 246 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 E + + ++ ++P + AD R KQI LN+LSNA+ FTP GG I I T ++ + Sbjct: 247 REAGLTLTSNITEHLPLLRADERKAKQIFLNLLSNAVKFTPPGGSIEIDAHLTHKGDLAI 306 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ +++ +PF QI +S R +GTGLGLPL K+ ++ + G ++ S Sbjct: 307 AVADTGIGIAPEHIDRVCEPFVQIDSSLSRRHDGTGLGLPLVKSFMELHEGSLHLRSKSG 366 Query: 800 KGTLIEIIFP 809 GT + FP Sbjct: 367 IGTCAIVTFP 376 >gi|209885750|ref|YP_002289607.1| histidine protein kinase DivJ [Oligotropha carboxidovorans OM5] gi|209873946|gb|ACI93742.1| histidine protein kinase DivJ [Oligotropha carboxidovorans OM5] Length = 601 Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 100/257 (38%), Positives = 152/257 (59%), Gaps = 1/257 (0%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M D++E K ++ L A++ AE+ + KS FLA +SHE+RTPL AIIGFSE++ ++ Sbjct: 318 VMRDVTERKAQEEALEIARREAEEAGASKSRFLATMSHELRTPLNAIIGFSEMLTHEDEM 377 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + R EYA I+ SG +L +VN +LD+SK+ESGK L EP + E ++ + +L+ Sbjct: 378 KIDAARRHEYAGLINESGLHLLSVVNGILDMSKMESGKFELVAEPFAPRETLASSCNLMV 437 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 L A +K + + +++P++ D R+ KQI LN+LSNAI FT GG + +S + E Sbjct: 438 LKARDKGVELVLRAPSDLPQMTGDARAFKQILLNLLSNAIKFTEEGGSVTVS-AEVAGRE 496 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + LRV DTG+G+ +L K F Q S R EGTGLGL + K +V + G+ + S Sbjct: 497 LALRVTDTGIGIGKDDLAHLGKAFFQAGASYHGRREGTGLGLSIVKNLVALHGGEMRVDS 556 Query: 797 TPAKGTLIEIIFPLYDT 813 GT + + P+ T Sbjct: 557 EIDCGTTVSVRLPIVFT 573 >gi|114569450|ref|YP_756130.1| periplasmic sensor signal transduction histidine kinase [Maricaulis maris MCS10] gi|114339912|gb|ABI65192.1| periplasmic sensor signal transduction histidine kinase [Maricaulis maris MCS10] Length = 562 Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 97/271 (35%), Positives = 158/271 (58%), Gaps = 4/271 (1%) Query: 543 IIIKKLPF--SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 +I+K P S +L+ + + H ++ AE+++ KS FLA VSHE+RTPL Sbjct: 257 VIVKTRPIHGGSVITLSKDSGPALQAALTQARHDREAAEEDARAKSQFLASVSHELRTPL 316 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 AIIGFS+V+K + FGPL RY EYA+ I SG +++++ D+LD+SKIE+ + L E Sbjct: 317 NAIIGFSDVMKARLFGPL-PARYAEYADLIHESGQHLMELIGDVLDMSKIEADRYELVRE 375 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 + E V+ + +++L A E I ++ + + D ++++QI LN+LSNA+ FTP Sbjct: 376 TFDIGEVVNLSAKMMRLQAEEAGINLKIKRHDGPLLVDGDRKALRQILLNLLSNAVKFTP 435 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 GG I++ S ++++ V D+GVG+ E + +P+ Q N++ I GTGLGL L Sbjct: 436 KGGAIVV-MARASGGQLVMAVGDSGVGIDPEETARLGQPYQQAANARDIEKRGTGLGLSL 494 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 +A+ + + G I S +GT + I P+ Sbjct: 495 VRALSELHGGSMNIASRKGEGTTVTISLPIL 525 >gi|7272187|gb|AAA23034.2| histidine protein kinase [Caulobacter crescentus CB15] Length = 597 Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 95/254 (37%), Positives = 153/254 (60%), Gaps = 3/254 (1%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DI+ + ++ L A+ AE ++ ++ FLA +SHE+RTPL AI+GFS++++ + FG Sbjct: 301 VLRDITVERHREHALDQARIDAEALAAGRARFLANMSHELRTPLNAIMGFSDIMRARMFG 360 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + RY EYA I SG +LD++ND+LD+SKIE+ + L EAV A+ L++ Sbjct: 361 PLSD-RYAEYAELIHESGGHLLDLINDVLDMSKIEAERFELQRGVFDAREAVQAAMRLLR 419 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 + ++ + +R + AD R++KQI LN++SNA+ FTP GGQ+ + T H + Sbjct: 420 VQSDTAGVQLRGVLPPGELEVDADRRALKQIVLNLVSNALKFTPRGGQVTV-TAHGYDGV 478 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + V DTGVG++ +LE+ +P+ Q ++Q R GTGLGL L +A G+ I S Sbjct: 479 LEIVVADTGVGISPEDLERLGRPYEQAGGAEQ-RARGTGLGLSLVRAFAQLLGGEMVIES 537 Query: 797 TPAKGTLIEIIFPL 810 GT + + P+ Sbjct: 538 RLGAGTTVSVRLPV 551 >gi|91202234|emb|CAJ75294.1| similar to histidine kinase [Candidatus Kuenenia stuttgartiensis] Length = 395 Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 99/253 (39%), Positives = 151/253 (59%), Gaps = 3/253 (1%) Query: 559 HDISEWKQEKNKLSHAKKIA-EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 H + + QEK IA EK KS+FLA +SHE+RTPL AIIGF+EV+K+ GP Sbjct: 136 HLLEKKVQEKTSDLQKTNIALEKAYRLKSEFLATMSHELRTPLNAIIGFAEVLKDGLVGP 195 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + + + EY + I SG +L+++N++LDISKIE+GK+ L +E + + E + + ++ V Sbjct: 196 INDEQR-EYVDDIYSSGKHLLNMINNVLDISKIEAGKLELKYEEICVKETIDDVLNTVSG 254 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 AN+K I I+ + ++IP + D +KQI N+LSNAI FTP G + I TT + V Sbjct: 255 IANKKNITIKNTIQSDIPTFVVDQLKLKQILFNLLSNAIKFTPKNGNVCIDTT-LKDLYV 313 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + DTG+G+ ++EK + F Q+ +S EG GL L L K +V+ + G+ ++ S Sbjct: 314 QFAIADTGIGIKQEDIEKIFEAFSQVDSSLARNYEGAGLSLALTKRLVELHGGEIWVESF 373 Query: 798 PAKGTLIEIIFPL 810 KG+ I PL Sbjct: 374 YGKGSTFTFILPL 386 >gi|182678896|ref|YP_001833042.1| integral membrane sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634779|gb|ACB95553.1| integral membrane sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 594 Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 101/289 (34%), Positives = 165/289 (57%), Gaps = 5/289 (1%) Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD-----ISEWKQEKNKLSHAKKIAEK 580 + + L LL + +K+ LT+ + I+E +Q + A++ AE+ Sbjct: 229 QAMPLAGLASAVLLYFLVTAQKIRAGVLEKLTIQNEKDELITELEQARVNSDLARRRAEE 288 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 + KS FLA +SHE+RTPL AI+GFSEV+K + FG Y +Y+N I SG +L + Sbjct: 289 ANLAKSRFLATMSHELRTPLNAILGFSEVMKGELFGAHVISSYKDYSNDIHASGQHLLTL 348 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700 +N++LD+S+IE+G + L + V+L V + L+ L A ++ + I ++PR+ AD Sbjct: 349 INEILDLSRIEAGHLELRDDCVALAHVVDDCRHLLALKAKKRGLTIEEHVEPDLPRLRAD 408 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 R+++Q+ALN+L+NA+ FTP GG I I T+N + + D+G G+ E+ M F Sbjct: 409 ERALRQVALNLLTNAVKFTPPGGWIKIKIGWTANGGQYVSIHDSGPGIPEEEMPIVMSSF 468 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 G+ +Q+ EG+GLGLP+ K +VD + G F + S +GT ++ P Sbjct: 469 GRGTLAQKNALEGSGLGLPIVKGLVDLHNGTFSLKSRLHEGTEAIVVLP 517 >gi|209548487|ref|YP_002280404.1| integral membrane sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534243|gb|ACI54178.1| integral membrane sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 513 Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 96/250 (38%), Positives = 147/250 (58%), Gaps = 3/250 (1%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D+S +Q + + + AE + KS FLA VSHE+RTPL AI+GFS+++ + FG Sbjct: 215 LRDVSVEQQLRAEAQNRVADAESANDAKSRFLAAVSHELRTPLNAILGFSDILIGEYFGK 274 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 N R EY + + SG +L +VN +LD+SKIE+G+ L EP + +V S++ L Sbjct: 275 FENDRQREYVSLVRESGAHLLSVVNTMLDMSKIEAGRYELILEPFDIASSVKSCESMLAL 334 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A K + + + + I+AD R+++QI +N++ NAI FT +GG ++S + + + Sbjct: 335 QAKTKGLTLTSRIQRGLGEIVADQRAIQQILINLVGNAIKFTEAGG--VVSVDAAARDGI 392 Query: 738 I-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + L V DTG+G+ +L +PF QI N R EGTGLGL L K +V + G F I S Sbjct: 393 LKLTVSDTGIGIAADKLALLGQPFVQIQNDYTRRFEGTGLGLSLVKGLVALHGGHFAIAS 452 Query: 797 TPAKGTLIEI 806 P +GT+I I Sbjct: 453 QPGEGTIITI 462 >gi|163759054|ref|ZP_02166140.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Hoeflea phototrophica DFL-43] gi|162283458|gb|EDQ33743.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Hoeflea phototrophica DFL-43] Length = 642 Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 95/252 (37%), Positives = 150/252 (59%), Gaps = 3/252 (1%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS+ + + S A+ ++ K+ FLA VSHE+RTPL AI+GFS+++ + FG Sbjct: 347 DISDQVAGRLRASTMADEADMANASKTRFLAAVSHELRTPLNAILGFSDILAREMFGKFN 406 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + R EY I +SG +L +VN +LD+SKIESG+ + EP L E V ++++L A Sbjct: 407 DERQREYVELIHQSGEHLLALVNTMLDMSKIESGRYEVFVEPFLLSEVVERCDAMLRLQA 466 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVI 738 ++ +++ A + ++AD R+V+QI +N++ NAI FT +GG I + + H ++ Sbjct: 467 EQRGVVMTRRMAPGLGEVVADRRAVQQILINLIGNAIKFTEAGGVINVDAGIHEG--LLV 524 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 L V DTG+G+ +L +PF Q+ N EGTGLGL L K +VD + G+F I S Sbjct: 525 LSVSDTGIGIPEEKLALIGQPFVQVQNGLARHFEGTGLGLSLVKGLVDLHGGQFAIASQE 584 Query: 799 AKGTLIEIIFPL 810 +GT++ I P+ Sbjct: 585 GEGTVVTIRLPV 596 >gi|254780701|ref|YP_003065114.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040378|gb|ACT57174.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Candidatus Liberibacter asiaticus str. psy62] Length = 495 Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 97/258 (37%), Positives = 154/258 (59%) Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 SC + I+E + K+ +K AE+E+ KS FLA +SHE+RTPL AI+GFSEVI+ Sbjct: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + GPL N Y EY I RSG +L+++N++LD+S+IE+G+ L +SL + V E Sbjct: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 I ++QL A EK I I ++ + AD + ++Q+ LN+LSNA+ FT GG++ ++ Sbjct: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 TS + ++D G G+ E+ + FGQ + + +G GLGLP+A++++ + G+ Sbjct: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 Query: 792 FYIFSTPAKGTLIEIIFP 809 F I S +G + I P Sbjct: 456 FLIRSKLREGVEVIAILP 473 >gi|90418087|ref|ZP_01225999.1| putative sensor histidine kinase [Aurantimonas manganoxydans SI85-9A1] gi|90337759|gb|EAS51410.1| putative sensor histidine kinase [Aurantimonas manganoxydans SI85-9A1] Length = 501 Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 95/249 (38%), Positives = 148/249 (59%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E + K A+ AE+ + KS FLA +SHE+RTPL AI+GFSEV+ N+ GP+GN Sbjct: 238 IAELEMAKIMSDEARSRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMSNEILGPIGN 297 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 Y +Y I SG +L ++N++LD+S++E+G+ L E V + + + V++ A Sbjct: 298 ESYKDYIADIHASGQHLLGLINEILDLSRVEAGRYALSEEAVDIVAIARDCLGYVRVKAE 357 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K ++I F ++P + AD RS++QI LN+LSNA+ FTP GG+I + T+ L Sbjct: 358 AKDLVIGAEFEADLPAMWADERSLRQIILNLLSNAVKFTPRGGEITLRVGWTAGGGQYLA 417 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+D G G+ E+ + FGQ + + +GTGLGLP+ +A++ + G F + S + Sbjct: 418 VKDNGPGIPEEEIPIVLSSFGQGSIAIKSAEQGTGLGLPIVQALMKMHDGSFELRSRLRE 477 Query: 801 GTLIEIIFP 809 GT IFP Sbjct: 478 GTEAIAIFP 486 >gi|91772955|ref|YP_565647.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711970|gb|ABE51897.1| Multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 765 Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 138/487 (28%), Positives = 237/487 (48%), Gaps = 37/487 (7%) Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397 HGN+ Y N F L Y S D++ I LS +L + + + ++ T I Sbjct: 289 HGNVTYINDYFAYLHGY-SPDEL-IGKNLSIFHSDGQLEEVHRVNEELMENGSYTNIEI- 345 Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 HT + + M+ + + + P+ + + ++ + I R E E + S+ Sbjct: 346 --WHTHKNGTTFPMLMSAVVMKDEGRNPQYLSASAVDITHL-KNIEDRIYESE-KKYSSL 401 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL--------------EQ 503 +E +DGI II ++G+I NR + ++ Y E+++ PF F+ Sbjct: 402 VENGNDGIIII-QDGLIKYANRKMIEMSEYSHEELIENPFIDFVSPKYIEIVKDRYQKRL 460 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 N + +HY EI + D R +++ + LL+ I++ DIS+ Sbjct: 461 NGEDIPSHYEIEIEANDDRTIPVDLSVSIINYQGLLATMAILR-------------DISD 507 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 WKQ K L +A+ AE+ + K++FLA VSHE+RTPL IIGFS+++ + G L N + Sbjct: 508 WKQAKAALIYARLTAEEANRTKTEFLANVSHELRTPLNPIIGFSDILVSGVAGEL-NEKQ 566 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 +YA I ++G+ +L IVN ++D+ I K++L + + E + E L+ A +K+ Sbjct: 567 KKYALNIKQNGSKLLTIVNRIIDMCNIRISKLDLKCDCFKVIEMIIETKDLLNSIALKKK 626 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 IL+ + I+AD ++I N++ NAI FTPSGG + I ++ V + V D Sbjct: 627 ILLDLHIDPELNEIVADKTKTREILYNLIENAIKFTPSGGHVSIHAIQ-KDDYVQISVTD 685 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ + ++ +PF Q+ +S + +G GLGL L K V G ++ S KG+ Sbjct: 686 TGIGIAHSDIGIIFRPFLQVDSSTTRQYDGVGLGLMLVKEYVKLQGGDIWVDSELGKGST 745 Query: 804 IEIIFPL 810 P+ Sbjct: 746 FTFTLPM 752 >gi|258591257|emb|CBE67554.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 981 Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 126/439 (28%), Positives = 211/439 (48%), Gaps = 45/439 (10%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 A+Q + Q + E D R + + +++++T D + + + I++ N Sbjct: 540 ASQLAVALEQTRLREEAKDRRGLEEALYASRQLFQAVVQSTPDAVIVADGSTRIVACNAG 599 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI-LSLDLR---QTLEKITLGSTKEE 536 +LFGY ++ P + + L ++ + R +T+E L + Sbjct: 600 AQRLFGYTEGELQGMPVMALVPERYRETHRQGLDRFEVTGEARVIGRTIEVDALRKDGSD 659 Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQ----------EKNK-LSHAKKIAEKESSHK 585 + L + K YS +HDI+E KQ EK + L A + E S HK Sbjct: 660 VPVELSLAGWKTGDRVFYSAILHDITERKQYTTHLEQTVQEKTRTLRAANQQLEAASRHK 719 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 S+FLA +SHE RTPL +IIGFS+++++ FGPL + +A I SG +L ++NDLL Sbjct: 720 SEFLANMSHEFRTPLNSIIGFSDILRDPAFGPL-TEKQARFAQNIQVSGQHLLSLINDLL 778 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705 D+SK+E+GK++LH EP EA+ A++ VQ A+ K++ + I+AD K Sbjct: 779 DLSKVEAGKIDLHPEPFECREAIRAALAEVQPQADLKQLELTPQTDEAPSTIIADPVRFK 838 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEE----------------------------V 737 QI LN+LSNA+ FTP GG+I ++ + +E + Sbjct: 839 QILLNLLSNAVKFTPEGGRITVTVRRAARQEEGDTSQGAAGQGLEILHSTPHTPHPCDVL 898 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS- 796 + V DTG+G+ +L + + F ++ + R +GTGLGL L K +V+ + G+ S Sbjct: 899 EIAVADTGIGIKPDDLPRLFQEFTRLDAAIAKRTKGTGLGLALTKRLVELHGGEIAAVSD 958 Query: 797 TPAKGTLIEIIFPLYDTSH 815 +G+ + P+ T+H Sbjct: 959 GEGRGSTFTVRLPITPTNH 977 >gi|92118136|ref|YP_577865.1| multi-sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] gi|91801030|gb|ABE63405.1| multi-sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] Length = 614 Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 99/254 (38%), Positives = 151/254 (59%), Gaps = 1/254 (0%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M DI+E K +++ L A AE+ + K+ FLA +SHE+RTPL AIIGFSE++ + Sbjct: 322 VMRDITERKHQEHALDLALTTAERADAAKTRFLATMSHELRTPLNAIIGFSEMMVQEDAL 381 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L R EYA I+ SG +L +VN +LDISK+ESG + EP + E + + +L+ Sbjct: 382 SLDAARRKEYAQLINDSGQHLLSVVNSILDISKMESGNFEILPEPFAPREVLLNSSNLLA 441 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 L A + I + T ++P+I D R+ +QI LN++SNA+ FT GG++ IS Sbjct: 442 LKARDNGIELVTRVPEDLPQITGDPRAFRQIVLNLVSNAVKFTERGGRVTIS-ARVEGSR 500 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 ++LRV D GVG+ +L++ PF Q + Q R EGTGLGL + K++V + G+ + S Sbjct: 501 MVLRVMDNGVGIAQEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVALHRGEIDVQS 560 Query: 797 TPAKGTLIEIIFPL 810 +GT + ++ PL Sbjct: 561 KVEEGTTVTVMLPL 574 >gi|154253591|ref|YP_001414415.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154157541|gb|ABS64758.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 468 Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 88/231 (38%), Positives = 138/231 (59%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+E+ K++FLA +SHE+RTPL AI+GFSE ++ + FGPLG+PRY+EY + I +G +L Sbjct: 226 ERENKAKTEFLANMSHELRTPLNAILGFSEAMQMELFGPLGHPRYVEYMHDIHHAGTHLL 285 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +VND+LD+S+IE M+L + + +++V+ A + + A P + Sbjct: 286 SLVNDILDLSRIELEGMSLTPQRIDFSGVCHNCLAIVRGRAERGGVQLIFECAPPFPEVE 345 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 D R +KQ+ +N+LSNA+ FTP+GG + + + I+R+RDTG+GM+ E+E+A++ Sbjct: 346 TDERRLKQVLINLLSNAVKFTPAGGTVSLDVRPAPDGGGIIRIRDTGIGMSETEVEQALR 405 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 PF Q EG GLGL L ++ G I S GTL+ + P Sbjct: 406 PFWQADAGLDRSFEGAGLGLALVSELLQLMGGSITIESERGAGTLVTVGLP 456 >gi|322421480|ref|YP_004200703.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320127867|gb|ADW15427.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 580 Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 122/380 (32%), Positives = 202/380 (53%), Gaps = 18/380 (4%) Query: 442 INKRKMEIEVM-----QLCSILEATSDG-IAIINREGIILSTNRAVSKLFGYPVEDILRK 495 IN+R+ E + + +I E+ SDG IAI + NRA+ ++ GY +++LR Sbjct: 206 INERRQAEECLKESEQRFRTIFESNSDGLIAIRIEDHKFYMCNRAICRMLGYREDELLRL 265 Query: 496 PFT-VFLEQNTPSVMNHYLTEI---LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 + E P + + E+ +S+ +++ + +S I+ K Sbjct: 266 SIADIHPEDKLPRAIRLFERELQGEISVAEELPVQRKDGSVFYADVNISPIILYGKPHLI 325 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + D++E ++ + A+ AE+ KSDFLA +SHE+RTPL ++IGFSEV++ Sbjct: 326 GAF----RDVTERRKLRES-EIARLAAEEACRTKSDFLANMSHELRTPLNSVIGFSEVLQ 380 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 ++ +GP+ N + EY N I SG +L ++ND+LD+SK+ESGKM L SL + + ++ Sbjct: 381 DELYGPM-NEKQREYVNNIHISGRHLLSLINDILDLSKVESGKMELELSAFSLRDMLGDS 439 Query: 672 ISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 +++ + A + I F I+AD R +KQI N+LSNAI FTP+GG + +S Sbjct: 440 LAMFKEKALRSAVGIHLEFDPEADANIMADQRKLKQIMFNLLSNAIKFTPAGGTLQVSAR 499 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + V + V DTG+G+ ++ K KPF Q+ + EGTGLGL L+K +V+ + G Sbjct: 500 RMPD-FVEIAVADTGIGIKAQDIPKLFKPFTQLGSVYTKGFEGTGLGLALSKRLVELHGG 558 Query: 791 KFYIFSTPAKGTLIEIIFPL 810 + + S G+ PL Sbjct: 559 RIRVKSKFGTGSRFSFTIPL 578 >gi|218674838|ref|ZP_03524507.1| probable two-component sensor histidine kinase protein [Rhizobium etli GR56] Length = 332 Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 94/250 (37%), Positives = 144/250 (57%), Gaps = 3/250 (1%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D+S +Q + + AE + KS FLA VSHE+RTPL AI+GFS+++ + FG Sbjct: 34 LRDVSVEQQLRAEAQSRAADAESANDAKSRFLAAVSHELRTPLNAILGFSDILIGEYFGK 93 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 N R EY + SG +L +VN +LD+SKIE+G+ L E + +V S++ L Sbjct: 94 FENDRQREYVGLVRESGAHLLSVVNTMLDMSKIEAGRYELILEAFDISASVRSCESMLAL 153 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A K + + + + I+AD R+++QI +N++ NA+ FT +GG ++S + + + Sbjct: 154 QAKSKGVTLTSRIQRGLGEIVADQRAIQQILINLVGNAVKFTEAGG--VVSVDAAARDGI 211 Query: 738 I-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + L V DTG+G+ +L +PF QI N R EGTGLGL L K +V + G F I S Sbjct: 212 LKLTVSDTGIGIAADKLAMLGQPFVQIQNDYTRRFEGTGLGLSLVKGLVALHGGNFAIAS 271 Query: 797 TPAKGTLIEI 806 P +GT+I I Sbjct: 272 QPGEGTIITI 281 >gi|288957737|ref|YP_003448078.1| two-component sensor histidine kinase [Azospirillum sp. B510] gi|288910045|dbj|BAI71534.1| two-component sensor histidine kinase [Azospirillum sp. B510] Length = 767 Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 115/360 (31%), Positives = 183/360 (50%), Gaps = 8/360 (2%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 IL++ D + + G I++ NRA +FG P ++ +P + + LT Sbjct: 381 GILDSMLDAVVTFDSNGRIITFNRAAELMFGMPEHRMVGQPIEALIPGARGGADDRDLTA 440 Query: 516 IL----SLDLRQTLEKITL--GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569 + + + T+ + L G L + ++ C + + D++ KQ++ Sbjct: 441 LRRDGHAFPVSFTVGDLRLDGGPCTPAALPAALGGVRPDEPRICVGV-IRDMTRRKQQEA 499 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L +K AE + K++FLA +SHE+RTPL AIIGF+EV+ ++ FG + N R Sbjct: 500 ELIASKTQAELANRAKTEFLANMSHELRTPLNAIIGFAEVLSSEFFGTV-NERQKSCITD 558 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG +LDIVN +LD+SK+E G+ +L E V EA+ + + +V+ A I I Sbjct: 559 IHDSGRHLLDIVNAVLDMSKLEFGQFDLSEESVEAHEAIGQCLMMVRDRAAAAGIAIHNE 618 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 I + D R+ KQ+ LN+LSNA+ FTP GGQI +S ++ L V DTG+G+ Sbjct: 619 VTAAIALLWVDRRAFKQVILNLLSNAVKFTPDGGQITVSAGLEADGGFRLTVADTGIGIP 678 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + +PF Q N+ R EGTGLGL ++K +D + G S GT + + P Sbjct: 679 AAFMADLFQPFRQAENTANRRYEGTGLGLSISKNFIDLHGGTLSCQSGLGAGTSMTVRLP 738 >gi|163793548|ref|ZP_02187523.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha proteobacterium BAL199] gi|159181350|gb|EDP65865.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha proteobacterium BAL199] Length = 514 Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 96/251 (38%), Positives = 148/251 (58%), Gaps = 1/251 (0%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ K + +L A+ A++ S K+ FLA VSHE+RTPL AIIG SE+I+++ +G + Sbjct: 241 RDITPHKAREEELVEAQLAAKEGSESKTRFLANVSHELRTPLNAIIGMSEIIRDEMWGGI 300 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 GNP+Y EYA I+ SG +LD++N +LD S+IE K+ LH + V + + ++ VQ Sbjct: 301 GNPKYREYATDINDSGLHLLDVINAILDYSRIEMDKVTLHDDQVDVVGVLDQSRRTVQRL 360 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +E + A ++AD RSV+Q+ LN+LSNAI TP GG+I ++ + E++ Sbjct: 361 LDEGGLTCELQ-AKGPLVLVADRRSVRQMLLNLLSNAIKHTPPGGRITLTAEAGNEGELV 419 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 L VRD+G G+ L +PF + R GTGLGL + K ++ + G I S Sbjct: 420 LTVRDSGEGIPRERLALVTEPFNLDEDISVSRQGGTGLGLAITKGLIKRHGGAMSINSRV 479 Query: 799 AKGTLIEIIFP 809 +GT + ++FP Sbjct: 480 GEGTTVRLVFP 490 >gi|309791480|ref|ZP_07685984.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308226477|gb|EFO80201.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 690 Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 113/362 (31%), Positives = 186/362 (51%), Gaps = 15/362 (4%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +L+A D + I + + +L N A ++FGYP + L P T + + Y + Sbjct: 196 MLDAAPDAMLIADGDEHVLVWNAAAERMFGYPAAEALGLPITRLIAARDA---HTYFS-- 250 Query: 517 LSLDLRQ------TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 L D RQ T+E E + + ++ + D++E +Q + Sbjct: 251 LIADQRQGPTLDATIEVHARRRDGSEFPSEFGLAAWRSLQGEYFTCVVRDVTERQQNQAA 310 Query: 571 LS--HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 L A E+ + K++FLA +SHE+RTPL I+ +E + +G L N R + + Sbjct: 311 LRTIEASTELERVAQLKNEFLANMSHELRTPLNTILSLTEAVSEGVYGLL-NDRQQQVLD 369 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + SG +L IVND+LD+ KIE+GK+ L EPV ++ + ++ +V+ A KRI I + Sbjct: 370 VVTESGQHLLGIVNDILDMIKIEAGKIELLIEPVEIESICAASMRMVRQIAYAKRIQIAS 429 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVG 747 + + I AD R +KQI +N+LSNA+ FTP GG++ + + +++ L V DTG+G Sbjct: 430 QIDHQVDLIEADPRRLKQILVNLLSNAVKFTPEGGRVTLVVRGDAEAQLVYLSVEDTGIG 489 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + +L + +PF Q+ R EGTGLGL L + + + G I STP G+ I+ Sbjct: 490 IAHTDLPRLFRPFVQLDARLSRRHEGTGLGLALVAHLTELHNGGVRIQSTPGTGSCFTIM 549 Query: 808 FP 809 P Sbjct: 550 LP 551 >gi|295690558|ref|YP_003594251.1| integral membrane sensor signal transduction histidine kinase [Caulobacter segnis ATCC 21756] gi|295432461|gb|ADG11633.1| integral membrane sensor signal transduction histidine kinase [Caulobacter segnis ATCC 21756] Length = 574 Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 93/261 (35%), Positives = 153/261 (58%), Gaps = 5/261 (1%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D++ + L A+ AE ++ ++ FLA +SHE+RTPL AI+GFS++++ + FG Sbjct: 288 VLRDVTAERDRAAALEQARADAEGLAAGRARFLANMSHELRTPLNAIMGFSDIMRARMFG 347 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + RY EYA I SG +LD++ND+LD+SKIE+ + L EA+ A+ L++ Sbjct: 348 PLSD-RYAEYAELIHESGGHLLDLINDVLDMSKIEAERFELQRGVFDAREAIQAAMRLLR 406 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-THTSNE 735 + ++ + +R + AD R++KQI LN++SNA+ FTP GGQ+ ++ + Sbjct: 407 VQSDSAGVQLRGVLPPGELEVDADRRALKQIVLNLVSNALKFTPRGGQVTVTLDGYDGVL 466 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 E++ V DTGVG++ +LE+ +P+ Q ++Q R GTGLGL L +A + G+ I Sbjct: 467 EIV--VADTGVGISPEDLERLGRPYEQAGGAEQ-RARGTGLGLSLVRAFAKLHGGEMAIE 523 Query: 796 STPAKGTLIEIIFPLYDTSHP 816 S GT + + P+ P Sbjct: 524 SRLGAGTTVSVRLPVLLAVLP 544 >gi|27378182|ref|NP_769711.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] gi|27351329|dbj|BAC48336.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] Length = 634 Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 99/258 (38%), Positives = 151/258 (58%), Gaps = 1/258 (0%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M D+++ K + L A+ AE + K+ FLA +SHE+RTPL AIIGFS++I ++ Sbjct: 333 VMRDVTDRKLSEQALDQARSAAEAADAAKTRFLATMSHELRTPLNAIIGFSDMIAQEQAL 392 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 LG + EYA I+ SG +L +VN +LD+SK+ESG + EP + ++ +L+ Sbjct: 393 MLGAAQRKEYAQVINDSGQHLLSVVNGILDMSKMESGNFEIASEPFAPRASLMHCCNLLA 452 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 L A E I + T ++P + D R+ KQI LN+++NAI FT GGQ+ +S S Sbjct: 453 LKARENGIDLITDAPQDLPVMTGDPRAFKQIVLNLVANAIKFTERGGQVSVSAA-VSGSH 511 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + LR+ DTGVG+ +L++ PF Q + Q R EGTGLGL + K++V ++G + S Sbjct: 512 LTLRISDTGVGIAPDDLKRIGAPFFQAGKTYQRRHEGTGLGLSIVKSLVALHLGDLTVQS 571 Query: 797 TPAKGTLIEIIFPLYDTS 814 +GT + + PL TS Sbjct: 572 RLGEGTAVTVKLPLVYTS 589 >gi|329890535|ref|ZP_08268878.1| non-motile and phage-resistance protein [Brevundimonas diminuta ATCC 11568] gi|328845836|gb|EGF95400.1| non-motile and phage-resistance protein [Brevundimonas diminuta ATCC 11568] Length = 250 Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 88/241 (36%), Positives = 150/241 (62%), Gaps = 3/241 (1%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+ AE ++ K+ FLA +SHE+RTPL A++GFS+ ++ + FGP+ PRY +YA Sbjct: 8 ELDAARAEAEAQNLGKTRFLAHMSHELRTPLNAVVGFSDAMRQELFGPV-PPRYADYAAS 66 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I +G +LD++ND+LD+S+IE+ + L E E V A++LV++ A++K + + Sbjct: 67 IHEAGGHLLDLINDVLDVSRIEADRYQLSLERFDAREPVLAALALVRIQADDKGVELAAV 126 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 + AD R++KQ+ALN+L+NA+ FTP GG + +S +++ + + V DTGVG++ Sbjct: 127 LPPEALSVRADRRALKQMALNLLANAVKFTPPGGTVTVS-VQAADDALEVTVADTGVGIS 185 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L + +P+ Q +++Q R +G+GLGL L +A+ + G + S GT + P Sbjct: 186 AEDLARLGRPYEQAGDAEQ-RAQGSGLGLALVRALAGLHGGTLALDSALGVGTAATVRLP 244 Query: 810 L 810 L Sbjct: 245 L 245 >gi|209965184|ref|YP_002298099.1| non-motile and phage-resistance protein [Rhodospirillum centenum SW] gi|209958650|gb|ACI99286.1| non-motile and phage-resistance protein [Rhodospirillum centenum SW] Length = 420 Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 144/246 (58%), Gaps = 5/246 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q +L H+++ E+ KS+FLA +HE+RTPL AI+GF++++ + +GPLGNP Y Sbjct: 165 RQLAEQLEHSRE----ENRRKSEFLANATHELRTPLNAILGFADLLVAEAYGPLGNPHYA 220 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EYA+ I + +L +V +D++K ESG+ + + + V ++I L++ A + Sbjct: 221 EYAHDIHTAAEHLLALVEGTMDLAKAESGQDEIELREIDIGRTVQDSIRLLRQLAEIGGV 280 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRD 743 + S R+ +D ++QI LN+ SNAI FTP GG + + + S+ IL +RD Sbjct: 281 SLTVSVPETPLRLRSDPEKIRQIVLNLASNAIKFTPKGGCVTVDVSADSDGGACILVIRD 340 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ +L A++PFGQ+ + + +GTGLGLPL + V+ G I S P GT+ Sbjct: 341 TGIGIAPQDLATALRPFGQVRSPDRPHPKGTGLGLPLTRRFVEMLGGSMAIDSRPGHGTV 400 Query: 804 IEIIFP 809 + + P Sbjct: 401 VTVRLP 406 >gi|327193898|gb|EGE60773.1| hypothetical protein RHECNPAF_1340019 [Rhizobium etli CNPAF512] Length = 538 Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 94/250 (37%), Positives = 145/250 (58%), Gaps = 3/250 (1%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D+S +Q + + AE + KS FLA VSHE+RTPL AI+GFS+++ + FG Sbjct: 240 LRDVSVEQQLRAEAQSRAADAESANDAKSRFLAAVSHELRTPLNAILGFSDILIGEYFGK 299 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 N R EY + SG +L +VN +LD+SKIE+G+ L E + +V S++ L Sbjct: 300 FENDRQREYVGLVRESGAHLLSVVNTMLDMSKIEAGRYELILEAFDISASVRSCESMLAL 359 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A K + + + ++ I+AD R+++QI +N++ NA+ FT +GG ++S + + + Sbjct: 360 QAKTKGVTLTSRIQRSLGEIVADQRAIQQILINLVGNAVKFTEAGG--VVSIDAAARDGI 417 Query: 738 I-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + L V DTG+G+ +L +PF QI N R EGTGLGL L K +V + G F I S Sbjct: 418 LKLTVSDTGIGIAADKLALLGQPFVQIQNDYTRRFEGTGLGLSLVKGLVALHGGNFAIAS 477 Query: 797 TPAKGTLIEI 806 P +GT+I I Sbjct: 478 QPGEGTIITI 487 >gi|190890965|ref|YP_001977507.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652] gi|190696244|gb|ACE90329.1| probable two-component sensor histidine kinase protein [Rhizobium etli CIAT 652] Length = 513 Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 94/250 (37%), Positives = 144/250 (57%), Gaps = 3/250 (1%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D+S +Q + + AE + KS FLA VSHE+RTPL AI+GFS+++ + FG Sbjct: 215 LRDVSVEQQLRAEAQSRAADAESANDAKSRFLAAVSHELRTPLNAILGFSDILIGEYFGK 274 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 N R EY + SG +L +VN +LD+SKIE+G+ L E + +V S++ L Sbjct: 275 FENDRQREYVGLVRESGAHLLSVVNTMLDMSKIEAGRYELILEAFDISASVRSCESMLAL 334 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A K + + + + I+AD R+++QI +N++ NA+ FT +GG ++S + + + Sbjct: 335 QAKTKGVTLTSRIQRGLGEIVADQRAIQQILINLVGNAVKFTEAGG--VVSIDAAARDGI 392 Query: 738 I-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + L V DTG+G+ +L +PF QI N R EGTGLGL L K +V + G F I S Sbjct: 393 LKLTVSDTGIGIAADKLALLGQPFVQIQNDYTRRFEGTGLGLSLVKGLVALHGGNFAIAS 452 Query: 797 TPAKGTLIEI 806 P +GT+I I Sbjct: 453 QPGEGTIITI 462 >gi|260462410|ref|ZP_05810618.1| histidine kinase [Mesorhizobium opportunistum WSM2075] gi|259031904|gb|EEW33172.1| histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 602 Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 94/226 (41%), Positives = 132/226 (58%), Gaps = 1/226 (0%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K FLA VSHE+RTPL AIIGFS+++ ++ FG +PR EY + SG +L +V + Sbjct: 345 KGRFLAVVSHELRTPLNAIIGFSDMLLHEMFGAFKDPRQKEYVGLVRDSGQHLLAVVTSI 404 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+S+IESG EP EAV S+++L A K I ++T A + I AD R+V Sbjct: 405 LDVSRIESGAYATEPEPFRFMEAVEMCQSMMRLQAQAKNIDLQTQIAPDAGDINADRRAV 464 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +QI +N++SNA+ FTP GG +++ + + VRDTG+G+ + KPF QI Sbjct: 465 QQILINLVSNAVKFTPDGGDVVVGAKRIGS-RLHFWVRDTGIGIAEEDFANLGKPFMQIQ 523 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 N R EGTGLGL L K +V + G I S P +GT + I P+ Sbjct: 524 NDYTRRFEGTGLGLSLVKGLVALHEGTMSIESMPGEGTTVTISLPV 569 >gi|150395865|ref|YP_001326332.1| multi-sensor signal transduction histidine kinase [Sinorhizobium medicae WSM419] gi|150027380|gb|ABR59497.1| multi-sensor signal transduction histidine kinase [Sinorhizobium medicae WSM419] Length = 772 Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 94/252 (37%), Positives = 152/252 (60%), Gaps = 9/252 (3%) Query: 565 KQEKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 +Q+K +LS A K+ AE + KS+FLA +SHE+RTPL AI+GFSE++++Q FGP Sbjct: 520 EQQKAELSVANANYQAEKERAEAANRAKSEFLANMSHELRTPLNAILGFSEILQDQMFGP 579 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 LG+ +Y EY+ I SG +L+++ND+LD+SKIE+G M + E + L + E + + Sbjct: 580 LGSEKYHEYSRDIFESGKHLLNVINDILDMSKIEAGHMRITRERIDLAPLIEETLRFTTI 639 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A +K I + ++ + + AD R++KQ+ LN+LSNA+ FT GG+I + V Sbjct: 640 PAEQKNIRVVQQVSSGLT-MFADRRAMKQVLLNLLSNAVKFTNEGGRISLRARKVRG-AV 697 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 L + D+G+G+ L+K +PF Q+ + G+GLGL +++++ + G I ST Sbjct: 698 TLTIADSGIGIPRDALQKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTRLHGGSIKIHST 757 Query: 798 PAKGTLIEIIFP 809 GT+I + P Sbjct: 758 ENVGTIISVRIP 769 >gi|319784578|ref|YP_004144054.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170466|gb|ADV14004.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 577 Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 94/226 (41%), Positives = 131/226 (57%), Gaps = 1/226 (0%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K FLA VSHE+RTPL AIIGFS+++ ++ FG +PR EY + SG +L +V + Sbjct: 320 KGRFLAVVSHELRTPLNAIIGFSDMLLHEMFGAFKDPRQKEYVGLVRDSGQHLLAVVTSI 379 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+S+IESG EP EAV S++QL A K I ++ A + I AD R+V Sbjct: 380 LDVSRIESGVYATEPEPFRFAEAVDMCQSMMQLQAQAKNIDLQAQIAPDAGDINADQRAV 439 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +Q+ +N++SNAI FTP GG +++ + + VRDTG+G+ + KPF QI Sbjct: 440 QQMLINLVSNAIKFTPDGGDVVVGAKRIGS-RLHFWVRDTGIGIAEEDFANLGKPFMQIQ 498 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 N R EGTGLGL L K +V + G I S P +GT + I P+ Sbjct: 499 NDYTRRFEGTGLGLSLVKGLVALHEGTMSIESMPGEGTTVTISLPV 544 >gi|254473454|ref|ZP_05086851.1| histidine kinase sensor protein [Pseudovibrio sp. JE062] gi|211957570|gb|EEA92773.1| histidine kinase sensor protein [Pseudovibrio sp. JE062] Length = 463 Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 90/251 (35%), Positives = 150/251 (59%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H ISE +Q A++ AE+ + K+ FLA +SHE+RTPL AI+GFSEV+K++ GP+ Sbjct: 184 HLISEMEQVNAISQEARRRAEEANLAKTRFLATMSHELRTPLNAILGFSEVMKDEVLGPM 243 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N Y++Y+ I++SG +L+++N++LD+S+IE+G+ L EPV L + + ++ + Sbjct: 244 HNQTYLDYSKDINQSGQHLLNLINEILDLSRIEAGRYELQEEPVCLRDVAAACKHMMHMR 303 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A K I I + + ++ AD ++++Q+ LN+L+NA+ FTP G+I I Sbjct: 304 AAAKNIEIHEVYEKGLSKVWADEKALRQMVLNLLTNAVKFTPPEGEISIHVGIDGAGGQY 363 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V DTG G+ E+ ++ FGQ + Q +GTGLGL + +A+ + G+F + S Sbjct: 364 ISVSDTGAGIPEEEIPVVLQAFGQGTQAIQDAEQGTGLGLSIVQALAHMHEGEFKLASKL 423 Query: 799 AKGTLIEIIFP 809 +GT I P Sbjct: 424 REGTQATISLP 434 >gi|227821337|ref|YP_002825307.1| two component sensor kinase [Sinorhizobium fredii NGR234] gi|227340336|gb|ACP24554.1| two component sensor kinase [Sinorhizobium fredii NGR234] Length = 527 Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 91/225 (40%), Positives = 137/225 (60%), Gaps = 1/225 (0%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K+ FLA VSHE+RTPL AI+GFS+V+ + FG L N R EY + I RSG +L +VN + Sbjct: 246 KTRFLAAVSHELRTPLNAILGFSDVLTGEYFGKLENDRQREYVSLIHRSGTHLLSVVNTM 305 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+SKIE+G+ L EP + +A++ +++ A EK + + + ++ I AD R+V Sbjct: 306 LDVSKIEAGRYELVPEPFRVADAIAACEAMLSHQAREKGVRLTSRVTRSVGEINADQRAV 365 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +QI +N++ NA+ FT GG + + + L V DTG+G+ +LEK +PF QI Sbjct: 366 QQILINLVGNAVKFTDKGGLVTVD-AEVDGAMLNLTVSDTGIGIAEDKLEKLGQPFVQIQ 424 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 N R EGTGLGL L K +V+ + G I S+ +GT++ + P Sbjct: 425 NDYTRRYEGTGLGLSLVKGLVELHGGGISIRSSEGEGTVVVVSIP 469 >gi|294495111|ref|YP_003541604.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292666110|gb|ADE35959.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 793 Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 116/356 (32%), Positives = 182/356 (51%), Gaps = 13/356 (3%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHY 512 + S+L++ D I + +G+ + N A ++ G P E+I+ K + +F + H Sbjct: 424 ITSLLDSIPDIIFFKDVKGVYMGCNPAFTEFVGRPREEIIGKTDYDLFDKAFADFFRKHD 483 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS------CYSLTMHDISEWKQ 566 + L R E IT ++ L L K P+ DI+E + Sbjct: 484 ERTLELLQPRHNEEWITYPDGRKILLDML-----KTPYRGPDGLLIGILGIGRDITERNR 538 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + L K IAE+ KS+F+ +SHE+RTPL ++IGFS+V+ + G L + + +Y Sbjct: 539 AEQALLKGKLIAEENDRMKSEFITNMSHELRTPLNSVIGFSDVLLKEIKGELNDSQK-KY 597 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + I +SG +L+++ND+LD+SKIE GKM L E L+ +SE S+ A +K I + Sbjct: 598 ISNISKSGRHLLELINDILDLSKIEEGKMELQCEDFDLNSILSEVESIFSPQAAKKDINL 657 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 + + IPRI D +KQ+ N+L+NAI FTP G I + + + + V DTG+ Sbjct: 658 QFVLSEKIPRIKGDKIKIKQVIFNLLTNAIKFTPKNGAISVIAKENDDNIIEVSVSDTGI 717 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+ +LE PF Q+ S GTG+GL LAK V + GKF + S KG+ Sbjct: 718 GIPEAKLEDVFDPFIQVDASTSRNYGGTGVGLSLAKKFVQMHDGKFCVESEVYKGS 773 >gi|217977833|ref|YP_002361980.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella silvestris BL2] gi|217503209|gb|ACK50618.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella silvestris BL2] Length = 494 Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 114/370 (30%), Positives = 185/370 (50%), Gaps = 21/370 (5%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 ++ E+ D + + +R G +LS LFG P D++ + F + + + Sbjct: 93 FAALHESVGDVVLLHDRTGAVLSIAGNRQSLFGLPAADLMGRGFFEHVHVADRPIFLKAI 152 Query: 514 TEI------LSLDLRQTLEKITLGSTKEEKLLSL----RIIIKKLPFSSCYSLTMHDISE 563 E +++ LR + G E L L R K P S ++ ++++ Sbjct: 153 GEASFSDAPITVALRLRASSLDRGDYAEPVFLWLDMRARRCGKHSPERSAVAI-FRNVTD 211 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 +++L A A+ H FLA VSHE+RTPL AIIGFSE++ + P + Sbjct: 212 AHWRQDELDSAGTAADLSKDH---FLANVSHELRTPLNAIIGFSEILGDADQAPRDPAKQ 268 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQLYAN 680 EYA I RSG +L +VN +LD+SKI SG +L HF L E + +V+L A Sbjct: 269 REYAAIIHRSGQHLLSVVNSILDLSKIHSGSFDLSPSHFGVAPLVEVCCD---MVKLEAQ 325 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 ++ I ++ +P I+ D R+ KQI +N+LSNA+ FTP+ G++ IS + +E +++ Sbjct: 326 DRHIELKRVCPEGLPEIVGDKRACKQIVINLLSNAVKFTPAHGEVSISVS-IEDETLLIA 384 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D+GVG+ +L + PF Q + EGTGLGL + +V + G + S P + Sbjct: 385 VADSGVGINEQDLARLGNPFFQARGALDRPFEGTGLGLSIVSGLVGLHGGSIAVASEPDQ 444 Query: 801 GTLIEIIFPL 810 GT + + P+ Sbjct: 445 GTCVLVRLPV 454 >gi|241203748|ref|YP_002974844.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857638|gb|ACS55305.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 503 Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 93/250 (37%), Positives = 147/250 (58%), Gaps = 3/250 (1%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D+S +Q +++ + AE + KS FLA VSHE+RTPL AI+GFS+++ + FG Sbjct: 205 LRDVSVEQQLRDEAQNRAADAESANDAKSRFLAAVSHELRTPLNAILGFSDILIGEYFGK 264 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 N R EY + SG +L +VN +LD+SKIE+G+ L E + +V S++ L Sbjct: 265 FENDRQREYVGLVRESGAHLLSVVNTMLDMSKIEAGRYELILEAFDISSSVKSCESMLAL 324 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A K + + + ++ ++AD R+++QI +N++ NAI FT +GG ++S + + + Sbjct: 325 QAKTKGLTLTSRIQRDLGEVVADQRAIQQILINLVGNAIKFTEAGG--VVSVDAAARDGI 382 Query: 738 I-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + L V DTG+G+ +L +PF QI N R EG+GLGL L K +V + G F I S Sbjct: 383 LKLTVSDTGIGIPADKLALLGQPFVQIQNDYTRRFEGSGLGLSLVKGLVALHGGYFAIAS 442 Query: 797 TPAKGTLIEI 806 P +GT+I I Sbjct: 443 QPGEGTIITI 452 >gi|288962304|ref|YP_003452599.1| two-component sensor histidine kinase [Azospirillum sp. B510] gi|288914570|dbj|BAI76055.1| two-component sensor histidine kinase [Azospirillum sp. B510] Length = 385 Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 138/226 (61%) Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KSD++ +SHE+RTPLTA+IGF+E++++Q GP +PRY E A I +G+ +L+++N+ Sbjct: 146 RKSDYINHLSHELRTPLTAVIGFAEILRDQLLGPPDSPRYGEAAAQIVAAGDYMLELINN 205 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 LLD+++IE+G+++LH E L V +S++ + A + + + P + AD Sbjct: 206 LLDLARIEAGRLDLHEEECPLALIVDATLSMMAVRAERGGVAMSARLPADSPTLWADPSL 265 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 V+Q+ N+++NA+ FT GG + +S ++ +IL V D G GM ++ +A+ F Q+ Sbjct: 266 VRQMLTNLVANALKFTAEGGHVTVSAERDADGGLILAVADDGRGMAPEQIPRALTAFTQL 325 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + G+GLGLPL A++ + G I S P +GT + + FP Sbjct: 326 HDPATVAERGSGLGLPLTAALIALHGGGIAIDSAPGRGTTLRLRFP 371 >gi|309790923|ref|ZP_07685465.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] gi|308227037|gb|EFO80723.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] Length = 1010 Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 112/367 (30%), Positives = 192/367 (52%), Gaps = 11/367 (2%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTE 515 ++E++ D I + + +G ++ NRA ++ GY +L R P + L P M L Sbjct: 508 LIESSPDAIVLFSEQGEVVQLNRAFEQMTGYTSAQMLGRTPEHIGL--IMPD-MTWDLAL 564 Query: 516 ILSLDLRQ----TLEKITLGSTKEEKL-LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 ++S DL + T + + E L +++R+ L Y T+ D++ K + K Sbjct: 565 MVSHDLAEHHYFTTIDLQIQRANGEMLDVAMRVFGLTLQGQPHYLATLRDVTTEKHAEEK 624 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A + K +FLA +SHE+RTPL AI+G SE + GPL N R ++ + I Sbjct: 625 LRQANVALAHAARTKDEFLASMSHELRTPLNAILGLSEALIEGVRGPL-NERQLDALHNI 683 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + SG +L ++ND+LD+SK+E+G+++L E VS+ E ++ V+ A +K + + Sbjct: 684 EASGQHLLALINDILDLSKVEAGRLDLQIEAVSVAEVCQASLLFVKEQALKKSLRLSFHL 743 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-HTSNEEVILRVRDTGVGMT 749 + + + AD R +KQ+ +N+LSNA+ FTP G + + T E+++ V DTG+G+ Sbjct: 744 DDQMAEMDADPRRLKQMLVNLLSNAVKFTPPKGHVNLHVTIDLEAEQIVFVVEDTGIGIA 803 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L + +PF Q+ + + EGTGLGL L + + + + G + S KG+ I P Sbjct: 804 QDDLPRLFQPFKQLDSRLSRQHEGTGLGLALVRRLAEMHGGGVMVESELGKGSRFSIQLP 863 Query: 810 LYDTSHP 816 P Sbjct: 864 YRQPEMP 870 >gi|83591667|ref|YP_425419.1| periplasmic sensor Signal transduction histidine kinase [Rhodospirillum rubrum ATCC 11170] gi|83574581|gb|ABC21132.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Rhodospirillum rubrum ATCC 11170] Length = 620 Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 94/249 (37%), Positives = 147/249 (59%), Gaps = 1/249 (0%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I + L A++ +E+ + K+ FLA +SHE+RTPL AIIGFS+++ N G L + Sbjct: 357 IVALSNREAALVAARRSSEEANRAKTLFLANMSHELRTPLNAIIGFSDMLANGIHGALAD 416 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 R +YA I+ S +LD++ND+LD++KIESG LH P +L + A ++ Sbjct: 417 -RQQDYARDINLSALHLLDLINDILDVAKIESGGYLLHERPCNLAAIIRAAERMLGPRVR 475 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 EK +++ T + ++AD R+++Q+ LN+LSNA+ FTP GG+I +S ++L Sbjct: 476 EKGLVMDTVCVDGEAWVMADERAMQQVLLNLLSNAVKFTPEGGRITVSLGLNEGGGMVLV 535 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG G+ L ++PF Q+ + EGTGLGLPLAKA+V+ + G + S P + Sbjct: 536 VGDTGPGIPAEHLALVLEPFYQVGEVETRSHEGTGLGLPLAKALVEKHEGALRLDSQPGQ 595 Query: 801 GTLIEIIFP 809 GT + + P Sbjct: 596 GTRVSVTLP 604 >gi|46200809|ref|ZP_00056331.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 549 Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 125/383 (32%), Positives = 192/383 (50%), Gaps = 27/383 (7%) Query: 449 IEVMQLCSILEA----TSDGIAIINREGIILSTN----RAVSK-LFGYPVEDILRKPFTV 499 I + QL SIL+A +SD +++ +G IL+ + R V K L G P + R Sbjct: 168 INLEQLASILDAAAPDSSDSALLVSPDGTILARSPDHVRYVGKSLAGQPAFETARTAPEG 227 Query: 500 FLEQNTP-----------SVMNHYLTEILSLDLRQTLEKITLGS-TKEEKLLSLRIIIKK 547 E +P +H + + S D L + L S T L + +II Sbjct: 228 SGEILSPLDGRKRLYAFHKASSHPVIAVASHDQEAQLREWRLHSMTLVASALLVGLIIGA 287 Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 L L D + ++L+ +++ A+ + KS FLA +SHE+RTPL AIIGFS Sbjct: 288 LALFLARQLERMD-----RTLSELARSRREADAANRAKSAFLANMSHELRTPLNAIIGFS 342 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 + + G R +Y ++ S +L ++ND+LD+SKIE+G + P L Sbjct: 343 DALLVGIPGHTCQSRCQDYLGHVQTSSRHLLSLINDILDLSKIEAGSTEIALAPTPLALL 402 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 ++E + +V+ A K I + + + + D R ++QI LN+LSNA+ FTP GG+II+ Sbjct: 403 ITECLEIVRAKAESKNISVALAGPDQDLMVTTDSRRLRQIVLNLLSNAVKFTPEGGRIIL 462 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 S ++ L V DTG+GMT E+ A+ PFGQ + R GTGLGLPL+K + + Sbjct: 463 EAECDSG-QLALTVNDTGIGMTQEEIAVALTPFGQNDSDLARREAGTGLGLPLSKRLTEL 521 Query: 788 NMGKFYIFSTPAKGTLIEIIFPL 810 G + S P +GT + I PL Sbjct: 522 LGGTLSVTSIPGRGTTVTISLPL 544 >gi|20093164|ref|NP_619239.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19918507|gb|AAM07719.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 1028 Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 97/254 (38%), Positives = 148/254 (58%), Gaps = 2/254 (0%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ ++ + KL AK AE S KS+FLA +SHE+RTPL +IIGFS+++ + FG Sbjct: 460 TGLDITAHRRSEEKLLQAKLEAEAASCTKSEFLANMSHELRTPLNSIIGFSDILIERVFG 519 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L N + ++Y N I SG +L ++ND+LD+SK+E+GKM+LH+ ++D E S + Sbjct: 520 EL-NEKQLKYVNNISGSGKHLLGLINDILDLSKVEAGKMDLHYSEFTVDSVFEEVKSTLF 578 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A K + I + I AD + QI N++SNAI FTP GG++ + S Sbjct: 579 PLAQAKSLEINFVVGPDFGDIQADRSRLIQILYNLVSNAIKFTPEGGRVSV-YCKKSGSR 637 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + V DTG+G+++ + +K +PF QI +S + GTGLGL L K +V+ + G ++ S Sbjct: 638 ALFSVTDTGIGISSEDQKKLFQPFTQIDSSSARQYCGTGLGLALVKKIVNLHKGDIWVES 697 Query: 797 TPAKGTLIEIIFPL 810 KG+ PL Sbjct: 698 ELEKGSTFMFTIPL 711 >gi|116251150|ref|YP_766988.1| two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255798|emb|CAK06879.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 526 Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 93/250 (37%), Positives = 146/250 (58%), Gaps = 3/250 (1%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D+S +Q +++ + AE + KS FLA VSHE+RTPL AI+GFS+++ + FG Sbjct: 228 LRDVSVEQQLRDEAQNRAADAESANDAKSRFLAAVSHELRTPLNAILGFSDILIGEYFGK 287 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 N R EY + SG +L +VN +LD+SKIE+G+ L E + +V S++ L Sbjct: 288 FENDRQREYVGLVRESGAHLLSVVNTMLDMSKIEAGRYELILEAFDISSSVKSCESMLAL 347 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A K + + + + ++AD R+++QI +N++ NAI FT +GG ++S + + + Sbjct: 348 QAKTKGLTLTSRIQRGLGEVVADQRAIQQILINLVGNAIKFTEAGG--VVSVDAAARDGI 405 Query: 738 I-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + L V DTG+G+ +L +PF QI N R EG+GLGL L K +V + G F I S Sbjct: 406 LKLTVSDTGIGIPADKLALLGQPFVQIQNDYTRRFEGSGLGLSLVKGLVALHGGYFAIAS 465 Query: 797 TPAKGTLIEI 806 P +GT+I I Sbjct: 466 QPGEGTIITI 475 >gi|182678998|ref|YP_001833144.1| multi-sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634881|gb|ACB95655.1| multi-sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 797 Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 93/237 (39%), Positives = 146/237 (61%), Gaps = 6/237 (2%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K AE + KS+FL +SHE+RTPL AIIGFSE++ + +GPLG+PRY++Y N I +SG Sbjct: 524 KAEAETANRAKSEFLTNMSHELRTPLNAIIGFSELMGQEPYGPLGSPRYLDYCNDIRQSG 583 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L +++D+LD+S++E+G++ L +D VS+AI+ V+ A EK I T A Sbjct: 584 QYLLGVISDVLDMSRLEAGRVRLEKTDFEIDTVVSKAIAGVKATAEEKEI---TLLAETT 640 Query: 695 PR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 P+ + AD ++++I L +L NAI FTP+ G++ + T I V DTG+G+ Sbjct: 641 PQTSVHADRGAIEKILLILLRNAIKFTPAQGRVTVRTRMIQGALNIY-VEDTGMGIPPAP 699 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L + +PF Q+ S +G+GLGL +A+++VD + G I ST GT++ + P Sbjct: 700 LARLGRPFEQLHGSMANGMKGSGLGLAIARSLVDLHGGSMRIRSTVGSGTIVLVRIP 756 >gi|114705118|ref|ZP_01438026.1| putative sensor histidine kinase transmembrane protein [Fulvimarina pelagi HTCC2506] gi|114539903|gb|EAU43023.1| putative sensor histidine kinase transmembrane protein [Fulvimarina pelagi HTCC2506] Length = 774 Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 91/263 (34%), Positives = 156/263 (59%), Gaps = 13/263 (4%) Query: 558 MHDISEWKQEKNK-------LSHAKKI----AEKESSHKSDFLARVSHEIRTPLTAIIGF 606 +H +SE + + + L+H+ +I AE S K+ FLA +SHE+RTPL AI+GF Sbjct: 504 IHALSETRSDAERKAAQLEELNHSFRIEKNKAEAASRAKTTFLANMSHELRTPLNAILGF 563 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 S++++ Q GP+G+ +Y YA+ I SG +L +++D+LD+ KIE+G+ + L E Sbjct: 564 SDIMRQQMLGPIGSEKYTGYAHDIHESGEFLLQLIDDILDMQKIETGRTTMLRRIFDLTE 623 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 AV+E+ +++ ++I + + I AD R+V QI +N++SNA+ F+ +GG++ Sbjct: 624 AVAESARMIEASVARRQIDLVVEQPEKL-NIYADRRAVTQILMNLMSNAVKFSDAGGEVR 682 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 +S S V+L + D G G++ L K +PF Q + +GTGLGL +A+++ + Sbjct: 683 VSVKERSG-AVLLSITDRGEGISQCNLAKIGRPFEQTESEWTRTKKGTGLGLAIARSLTE 741 Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809 + G+F I ST +GT++ I P Sbjct: 742 LHGGRFRIASTLGEGTIVAIRLP 764 >gi|209965987|ref|YP_002298902.1| sensor protein divL [Rhodospirillum centenum SW] gi|209959453|gb|ACJ00090.1| sensor protein divL [Rhodospirillum centenum SW] Length = 821 Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 93/251 (37%), Positives = 149/251 (59%), Gaps = 6/251 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+++ + + L + E KS+F+A VS+++RTPL AI+GF+E++ NQ FGPL Sbjct: 560 DVTDSARVEQALRATNEALETADRLKSEFIANVSYQLRTPLNAIMGFAEILNNQYFGPL- 618 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 NPR IEYA + + +L +VND+LD++ IE+G M L PV + V+ L + +A Sbjct: 619 NPRQIEYARGVLEASRRLLALVNDILDLATIEAGFMVLERAPVDVAGLVNGVAMLTRDWA 678 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 ++ + +RT I + AD + +KQ N++SNA+ FTP+GG+II+S + +EV+L Sbjct: 679 RQQELDLRTDIPAGIGTLEADEKRLKQALFNLVSNAVRFTPAGGRIILS-ARRAGDEVVL 737 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNS-QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 VRDTG+G+ + ++ FG+ + Q R G GLGL L K+ ++ + G+ I S P Sbjct: 738 SVRDTGIGIPQDDQQRV---FGRFERAHHQSRSGGAGLGLSLVKSFIELHGGRVEIDSAP 794 Query: 799 AKGTLIEIIFP 809 GT + P Sbjct: 795 EHGTEVRCHLP 805 >gi|163792987|ref|ZP_02186963.1| sensor/response regulator hybrid [alpha proteobacterium BAL199] gi|159181633|gb|EDP66145.1| sensor/response regulator hybrid [alpha proteobacterium BAL199] Length = 528 Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 93/247 (37%), Positives = 148/247 (59%), Gaps = 3/247 (1%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q L +K E + KS+FLA +SHE+RTPL AIIGFS+++ NQ FG LG+ RY + Sbjct: 264 QTVADLQESKSELESANRFKSEFLANMSHELRTPLNAIIGFSDIMVNQLFGKLGDARYED 323 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI- 684 YA I S N +++I+ D+LD ++IE GK+ L VS+D + +A+ ++ + +RI Sbjct: 324 YAKDIHYSANHLIEIIGDILDTTRIEFGKLELQEATVSVDGLLEDALRIISPSIHAQRIK 383 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 L + + P++ D V+QI +N+LSNA+ FT GG I I E+ + DT Sbjct: 384 LEQQALPLPGPKLRCDPIRVRQILINLLSNAVKFTDPGGAISIGVKIRDGIEIT--ITDT 441 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ +LE+ + PF Q+ ++ + +GTGLGL L+K +++ + GK + S +GT + Sbjct: 442 GIGIDEADLERVVTPFAQVEHAFARKYQGTGLGLSLSKTLMECHQGKLTLSSRLGEGTAV 501 Query: 805 EIIFPLY 811 I FP + Sbjct: 502 TIYFPAF 508 >gi|296122662|ref|YP_003630440.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] gi|296015002|gb|ADG68241.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] Length = 810 Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 125/415 (30%), Positives = 209/415 (50%), Gaps = 16/415 (3%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 A++ E + +E V+ R EV +L I T++G+ I +R+G + N Sbjct: 234 ASKRLERQLREAVESRAVELERQVRNRTSEVNRLAEIARRTANGVVITDRKGRVEWINEG 293 Query: 481 VSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 +++ GY +ED+ +KP V NT + + + + L T E + E + Sbjct: 294 FTRICGYTIEDLRGKKPGDVLQGPNTNPMAIQRIGDAIRQGLPVTEEVVNYSKNGREYYI 353 Query: 540 SLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLS-HAKKI------AEKESSHKSDFLA 590 + I + + S + DI+E Q + +L HA+++ AE + K+DFLA Sbjct: 354 RIEIDPLRDERGEISGFMAIESDITEQHQHQEELKRHAEEMERLRNAAESANRAKTDFLA 413 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLG--NPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 +SHEIRTP+TAI+G++E++ + P G + IE I R+G+ +L+I+ND+LD+S Sbjct: 414 NMSHEIRTPMTAILGYTELLA-ENSDPAGTTSAERIECIETIRRNGDHLLEIINDILDLS 472 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQI 707 KIE+G M + P L V + SL+Q A K I +R + +P I+ D +KQI Sbjct: 473 KIEAGMMTVEKIPTDLAYLVKDVESLMQFKATRKGINLRLNLVEPLPTIIHTDPVRLKQI 532 Query: 708 ALNILSNAIHFTPSG--GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 +N+L NAI FT G + + +T +++ V DTG+GMT ++ + F Q Sbjct: 533 LVNLLGNAIKFTEHGEVSMKVHTDANTFPGLIVIDVVDTGIGMTPQQMSQLFGAFVQADT 592 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 S + GTGLGL ++K++ G I S P KG++ ++ PH+ + Sbjct: 593 STTRKFGGTGLGLRISKSLAQLLGGNITISSEPGKGSVFQLTISTGLAEAPHEVV 647 >gi|315122620|ref|YP_004063109.1| two-component sensor histidine kinase protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496022|gb|ADR52621.1| two-component sensor histidine kinase protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 709 Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 101/266 (37%), Positives = 164/266 (61%), Gaps = 17/266 (6%) Query: 557 TMHDISEWKQ----EKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 T++D+S +Q +K +LS A K+ AE + KS+FLA++SHE+RTPL AI+G Sbjct: 447 TINDLSTSRQILERQKTELSIANAKYQTEKERAEMANRAKSEFLAKMSHELRTPLNAILG 506 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE+IK + FG LG+ +Y EY I SG +L+++N++L++SKIES + ++ + +L Sbjct: 507 FSEIIKGETFGKLGSVKYYEYVKDIHDSGKHLLNLINNILEMSKIESEHIAINKKNTNLI 566 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGG 723 ++E++ + A +K I+I + + P + AD R +K+I I SN+I FT +GG Sbjct: 567 PIINESLQSIASSAQKKNIMIEKNIS---PELFCNADERIIKKILTPIFSNSIKFTNNGG 623 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 ++I+ T+ N+ VI+ V DTG+G+ L+K KPF Q+ N G+GLGL ++ A Sbjct: 624 KMIVQTSRV-NDSVIITVADTGIGIPKSALKKVGKPFEQLHNQYDQNTGGSGLGLAISDA 682 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809 + + + GK I S +GT+I+I P Sbjct: 683 LTNLHGGKLEILSQEGEGTVIKIGMP 708 >gi|91976421|ref|YP_569080.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB5] gi|91682877|gb|ABE39179.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB5] Length = 607 Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 100/258 (38%), Positives = 151/258 (58%), Gaps = 1/258 (0%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M D+++ K ++ L A+ A + + KS FLA +SHE+RTPL AIIGFS++I ++ Sbjct: 325 VMRDVTDRKLQEQALEQARAEASRADASKSRFLATMSHELRTPLNAIIGFSDMILHEDEL 384 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L R EYA I+ SG +L +VN +LD+SK+ESG + EP + A+ +L+ Sbjct: 385 MLAPERRKEYAQLINDSGQHLLSVVNGILDMSKMESGNFEIVPEPFAPRPALLNCCNLLA 444 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 L A E I + T ++P I+ D R+ KQI LN++SNAI FT GG + + Sbjct: 445 LKARENGIELVTRAPEDLPEIVGDARAFKQILLNLVSNAIKFTERGGTVSVEAA-VEAAR 503 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 ++LRVRD GVG+ +L++ PF Q + Q R EGTGLGL + K++V + GK + S Sbjct: 504 LVLRVRDNGVGIAAEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVGLHGGKIDVTS 563 Query: 797 TPAKGTLIEIIFPLYDTS 814 +GT++ I PL ++ Sbjct: 564 EVDRGTIVTISLPLAPSA 581 >gi|21228280|ref|NP_634202.1| two component system histidine kinase [Methanosarcina mazei Go1] gi|20906740|gb|AAM31874.1| Two component system histidine kinase [Methanosarcina mazei Go1] Length = 813 Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 109/351 (31%), Positives = 184/351 (52%), Gaps = 20/351 (5%) Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS---VMNHYLTEILSLDLRQTL 525 +R G+ ++ N+ L +DI+ K F+ M+ L + + +T Sbjct: 439 DRNGVYIACNKGFENLLRVQKQDIIGKHIYDFIPHKIAENYHAMDIGLVKHKRNHVYETS 498 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFS------SCYSLTMHDISEWKQEKNKLSHAKKIAE 579 K GS + +++ K FS S M DI+E KQ + ++ AK +AE Sbjct: 499 LKFPDGSVHQ-------VMLNKFIFSGVTEEDSVLLGIMIDITERKQAEERMLQAKMVAE 551 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 + K+ F+ +SHE+RTPL A+IGFS+++ ++ GPL N + Y I +SGN +LD Sbjct: 552 AANRAKTTFIVNMSHELRTPLNAVIGFSDLLLSETVGPL-NEKQKRYTENISKSGNHLLD 610 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699 ++ND+LDISK+E G + L++E V + + E ++ + +K I+I + ++ ++A Sbjct: 611 VINDVLDISKLELGNIELYYETVDVAGIIEEVQRVLSPLSADKNIIIESYIEKDLKTVIA 670 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMK 758 D +KQI NIL+NAI F+ G++ I E++I + V D G+G+ + EK + Sbjct: 671 DRVKLKQILYNILNNAIKFSSENGKVNIYA--EPREDMIEISVEDEGIGIQESDYEKVFQ 728 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 PF QI S + G GLGL L K V+ + GK ++ ++P G++ P Sbjct: 729 PFVQIDESISRKHGGVGLGLALVKRFVELHGGKVWVKASPGGGSIFTFRIP 779 >gi|288957220|ref|YP_003447561.1| two-component sensor histidine kinase [Azospirillum sp. B510] gi|288909528|dbj|BAI71017.1| two-component sensor histidine kinase [Azospirillum sp. B510] Length = 434 Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 92/264 (34%), Positives = 151/264 (57%) Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + L + L + +L A++ AE+ K+ FLA +SHEIRTPLTA++G Sbjct: 164 RYLGVGTVTGLMARSAEQTDLRARQLEEARQKAERAIRAKTAFLANMSHEIRTPLTAMMG 223 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 F+E+++ + GP P Y EYA I SG +++++NDLLD+SK ++ ++ L V + Sbjct: 224 FAELLEQEVLGPHAIPLYREYARDIAESGRHLMELINDLLDLSKADADRLELVEGTVDVV 283 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 A L+ A + I T+ ++P + AD R ++Q+ LN+LSN + FTP+ G + Sbjct: 284 RVAIGAARLLAERAARHGVRIATTVPLDLPPLRADERKLRQMLLNLLSNGVKFTPADGVV 343 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + ++ + L V DTG+GMT EL KA++P+GQI ++ G+GLGLPL K ++ Sbjct: 344 TLGAHMAADGALWLSVHDTGIGMTGEELAKALEPWGQIDSALARVQVGSGLGLPLTKRLI 403 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + + G+ I S GT + ++FP Sbjct: 404 ELHGGRLDIVSRCDDGTTMSLVFP 427 >gi|329849848|ref|ZP_08264694.1| histidine protein kinase divJ [Asticcacaulis biprosthecum C19] gi|328841759|gb|EGF91329.1| histidine protein kinase divJ [Asticcacaulis biprosthecum C19] Length = 570 Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 94/216 (43%), Positives = 141/216 (65%), Gaps = 11/216 (5%) Query: 571 LSHAKKI------AEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 L HA+++ AE ES K+ FLA +SHE+RTPL A+IGFS++++ + FG L +P+ Sbjct: 295 LIHAREVSLEASRAEAESLNQSKTKFLASMSHELRTPLNAVIGFSDIMRQKLFGDL-SPK 353 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y EYA I SG VLD++ND+LD+SKIE+ K L E L E VS A+ L++ A++K Sbjct: 354 YTEYAQLIWESGQHVLDMINDVLDMSKIEAQKYELTLETFDLREPVSGALRLIRAAAHDK 413 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 I I ++ + + AD R++KQI LN+LSNA+ FTP GG + + H++N EV + +R Sbjct: 414 AIEITSTMPVSSLTVTADKRAIKQICLNLLSNAVKFTPKGGDVALVLGHSAN-EVEITIR 472 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 DTG+G+ +L + +P+ Q ++Q + GTGLGL Sbjct: 473 DTGIGIAPDDLSRLGQPYEQAGPAEQ-KAMGTGLGL 507 >gi|323137204|ref|ZP_08072283.1| multi-sensor signal transduction histidine kinase [Methylocystis sp. ATCC 49242] gi|322397562|gb|EFY00085.1| multi-sensor signal transduction histidine kinase [Methylocystis sp. ATCC 49242] Length = 623 Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 92/229 (40%), Positives = 135/229 (58%), Gaps = 1/229 (0%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 ++ K+ FLA VSHE+RTPL AIIGFSE++ N P + EYA I SG+ +L++V Sbjct: 356 TASKTRFLANVSHELRTPLNAIIGFSEMLANPELAPTDPGKQREYAEIISNSGHHLLEVV 415 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 N +LD+SKIESG M + EP SL + + +VQL A++ + + + +I ++AD Sbjct: 416 NTILDMSKIESGSMQIFPEPFSLPALIDQCCDMVQLKADQSAVTLLRDYRRDIDDLVADK 475 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 R+ KQI LN+LSNA+ FTP+ G++ I N I V D+G+G+ +L + PF Sbjct: 476 RACKQILLNLLSNAVKFTPANGKVKIRLAPEGNHLGI-SVIDSGIGIAPADLARLGDPFF 534 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 Q S EGTGLGL + + +V + G + S P KGT + + PL Sbjct: 535 QASASHDRTHEGTGLGLSVVRGLVGLHGGSITVESAPRKGTSVTVRLPL 583 >gi|288959744|ref|YP_003450084.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288912052|dbj|BAI73540.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1082 Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 95/261 (36%), Positives = 156/261 (59%), Gaps = 5/261 (1%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y DI+ K + +L A++ AE S K++FLA +SHE+RTP+ A+IGF+++I + Sbjct: 494 YVSVERDITSRKIMEAELQDARQAAEAASRGKTEFLASLSHELRTPMNAVIGFADLIARE 553 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 GP+GN +Y ++A I SG +L+++N++LD + E+G++ L EPV LD A + AI Sbjct: 554 AEGPVGNAQYRDFAINIRDSGQHLLELINEILDQVRAEAGQLVLDDEPVDLDAAATFAIR 613 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 L+ A I I + D R ++QI LN+LSNA+ +TP+GG + ++T Sbjct: 614 LLTPRAARAGIAIAAKVEPAARHMRGDERRIRQILLNLLSNAVKYTPAGGSVSLTTGPAP 673 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQI--PNSQQI---RGEGTGLGLPLAKAMVDAN 788 + ++L VRDTGVG+ ELE+ + ++ P+ ++ R EG+GLGLPL + +V+ + Sbjct: 674 DGGLLLEVRDTGVGIPEPELERVPPAYTRVDGPDGRRAESRRIEGSGLGLPLTRRLVELH 733 Query: 789 MGKFYIFSTPAKGTLIEIIFP 809 G + S +GT + + FP Sbjct: 734 GGTLTLASRVGRGTTVTVHFP 754 >gi|86750625|ref|YP_487121.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris HaA2] gi|86573653|gb|ABD08210.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris HaA2] Length = 627 Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 100/254 (39%), Positives = 148/254 (58%), Gaps = 1/254 (0%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M D+++ KQ++ L A+ A + + KS FLA +SHE+RTPL A+IGFS++I ++ Sbjct: 345 VMRDVTDRKQQEQALEEARAEAGRADATKSRFLATMSHELRTPLNAVIGFSDMILHEDEL 404 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L R EYA I+ SG +L +VN +LD+SKIESG + EP + A+ +L+ Sbjct: 405 MLAPERRKEYAQLINDSGQHLLSVVNGILDMSKIESGHFEIAPEPFAPRPALLNCCNLLA 464 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 L A E I + T N+P I+ D R+ KQI LN++SNAI FT GG + + Sbjct: 465 LKARENGIDLVTRAPENLPEIVGDPRAFKQILLNLVSNAIKFTERGGTVSVDAM-VEGAR 523 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 ++LRV DTGVG+ +L++ PF Q + Q R EGTGLGL + K++V + G + S Sbjct: 524 LVLRVSDTGVGIAAEDLKRIGDPFFQAGTTYQRRHEGTGLGLSIVKSLVGMHGGDIEVKS 583 Query: 797 TPAKGTLIEIIFPL 810 +GT + + PL Sbjct: 584 EVDRGTTVTVSLPL 597 >gi|15964778|ref|NP_385131.1| putative sensor histidine kinase transmembrane protein [Sinorhizobium meliloti 1021] gi|15073956|emb|CAC45597.1| Putative sensor histidine kinase transmembrane protein [Sinorhizobium meliloti 1021] Length = 772 Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 93/252 (36%), Positives = 150/252 (59%), Gaps = 9/252 (3%) Query: 565 KQEKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 +Q+K +LS A K+ AE + KS+FLA +SHE+RTPL AI+GFSE++++Q FGP Sbjct: 520 EQQKAELSIANANYQAEKERAEAANRAKSEFLANMSHELRTPLNAILGFSEILQDQMFGP 579 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 LG+ +Y EY+ I SG +L+++ND+LD+SKIE+G M + E + L + E + + Sbjct: 580 LGSEKYHEYSRDIFESGKHLLNVINDILDMSKIEAGHMRITRERIDLAPLIEETLRFTTI 639 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A K I + ++ + + AD R++KQ+ LN+LSNA+ FT GG+I + V Sbjct: 640 PAERKNIRVVQQISSGLT-MFADRRAMKQVLLNLLSNAVKFTNEGGRISLRARKVRG-AV 697 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 L + D+G+G+ L+K +PF Q+ + G+GLGL +++++ + G I S Sbjct: 698 TLTIADSGIGIPKGALQKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTRLHGGTMKIHSA 757 Query: 798 PAKGTLIEIIFP 809 GT+I + P Sbjct: 758 ENVGTIISVRIP 769 >gi|288957536|ref|YP_003447877.1| two-component sensor histidine kinase [Azospirillum sp. B510] gi|288909844|dbj|BAI71333.1| two-component sensor histidine kinase [Azospirillum sp. B510] Length = 423 Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 87/238 (36%), Positives = 145/238 (60%), Gaps = 3/238 (1%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S KS FLA++SHE+RTPL A++GFSE++ + FGPLGNPRY Y I +G +L ++ Sbjct: 174 SRAKSAFLAQMSHELRTPLNAVLGFSEMLLTEAFGPLGNPRYRSYVGDIRDAGTHLLALI 233 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 +D+L++S+++ G M + E V LD ++ ++ A E +++R A ++P + D Sbjct: 234 DDILELSRLDGGGMPMAAEGVDLDMLSLRVVTALREAAAEGGVIMRREVAPDLPLLQGDA 293 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 +S+ Q+ N+LSNA+ T GG+++++ + + + V DTGVG+ +L + + PF Sbjct: 294 QSLTQMLTNLLSNAVTHTRPGGEVVLTAHLMPDGGIGVMVADTGVGIPTADLPRILDPF- 352 Query: 762 QIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 P+S R GTGLGLP+ K +V+ + G+ + S P GT + ++FP + S P D Sbjct: 353 DPPDSTIARNSCGTGLGLPIVKRLVEMHGGRMELTSQPGVGTSVVLVFP-AERSLPRD 409 >gi|46202643|ref|ZP_00052865.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 848 Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 86/200 (43%), Positives = 131/200 (65%), Gaps = 1/200 (0%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I+E + + +L AK+ A+ + K++FLA VSHE+RTPL A+IGFSEV+ ++ FGPLG Sbjct: 568 EIAEHIRAERELVAAKEQADLANRAKTEFLANVSHELRTPLNAVIGFSEVMASEMFGPLG 627 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + RY Y N I SG +L ++ND+LDI+KIE+G+M EPV E V+ AI +V+ A Sbjct: 628 SARYAGYVNDILTSGRHLLAVINDILDIAKIEAGQMEFDMEPVEPAEVVAAAIRIVESRA 687 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + + + T A ++P + AD R + QI +N+LSN++ FTP GG++ + T +V Sbjct: 688 DSGGLFLGTHIAEDVPILRADRRRLLQILVNLLSNSVKFTPEGGRVEV-TVEKIGVDVGF 746 Query: 740 RVRDTGVGMTNYELEKAMKP 759 V DTG+GM+ E+ AM+P Sbjct: 747 TVADTGIGMSEDEVVVAMQP 766 >gi|307309665|ref|ZP_07589317.1| multi-sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] gi|307319462|ref|ZP_07598889.1| multi-sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] gi|306894834|gb|EFN25593.1| multi-sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] gi|306899877|gb|EFN30500.1| multi-sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] Length = 775 Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 93/252 (36%), Positives = 150/252 (59%), Gaps = 9/252 (3%) Query: 565 KQEKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 +Q+K +LS A K+ AE + KS+FLA +SHE+RTPL AI+GFSE++++Q FGP Sbjct: 523 EQQKAELSIANANYQAEKERAEAANRAKSEFLANMSHELRTPLNAILGFSEILQDQMFGP 582 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 LG+ +Y EY+ I SG +L+++ND+LD+SKIE+G M + E + L + E + + Sbjct: 583 LGSEKYHEYSRDIFESGKHLLNVINDILDMSKIEAGHMRITRERIDLAPLIEETLRFTTI 642 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A K I + ++ + + AD R++KQ+ LN+LSNA+ FT GG+I + V Sbjct: 643 PAERKNIRVVQQISSGLT-MFADRRAMKQVLLNLLSNAVKFTNEGGRISLRARKVRG-AV 700 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 L + D+G+G+ L+K +PF Q+ + G+GLGL +++++ + G I S Sbjct: 701 TLTIADSGIGIPKGALQKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTRLHGGTMKIHSA 760 Query: 798 PAKGTLIEIIFP 809 GT+I + P Sbjct: 761 ENVGTIISVRIP 772 >gi|420780|pir||A46414 histidine protein kinase divJ - Caulobacter crescentus Length = 596 Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 91/233 (39%), Positives = 143/233 (61%), Gaps = 3/233 (1%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE ++ ++ FLA +SHE+RTPL AI+GFS++++ + FGPL + RY EYA I SG + Sbjct: 321 AEALAAGRARFLANMSHELRTPLNAIMGFSDIMRARMFGPLSD-RYAEYAELIHESGGHL 379 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 LD++ND+LD+SKIE+ + L EAV A+ L+++ ++ + +R + Sbjct: 380 LDLINDVLDMSKIEAERFELQRGVFDAREAVQAAMRLLRVQSDTAGVQLRGVLPPGELEV 439 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 AD R++KQI LN++SNA+ FTP GGQ+ + T H + + + V DTGVG++ +LE+ Sbjct: 440 DADRRALKQIVLNLVSNALKFTPRGGQVTV-TAHGYDGVLEIVVADTGVGISPEDLERLG 498 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +P+ Q ++Q R GTGLGL L +A G+ I S GT + + P+ Sbjct: 499 RPYEQAGGAEQ-RARGTGLGLSLVRAFAQLLGGEMVIESRLGAGTTVSVRLPV 550 >gi|222147978|ref|YP_002548935.1| two component sensor kinase [Agrobacterium vitis S4] gi|221734966|gb|ACM35929.1| two component sensor kinase [Agrobacterium vitis S4] Length = 599 Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 86/255 (33%), Positives = 146/255 (57%), Gaps = 1/255 (0%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + M D E +Q +L + + KS FLA VSHE+RTPL AI+GFS+++ F Sbjct: 247 VQMLDCREQQQMAQRLVKLDADLQTANEAKSRFLAAVSHELRTPLNAILGFSDILMGDYF 306 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G + + R+ EY I +SG +L +VN +LD+ +IE+G+ L EP SL +A+ + +++ Sbjct: 307 GRMEDERHREYVRLIRQSGGHLLSVVNTMLDMCRIEAGRYELLVEPFSLSQAIHDCENML 366 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 L A EK + + + ++ + AD R+V+QI +N++ NAI FT GG + + + Sbjct: 367 ALQAQEKGVKLTSRIGRDVSELTADPRAVRQILINLVGNAIKFTEPGGVVTVDAARF-GK 425 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++++ V DTG+G+ + +PF Q+ + + +G GLGL L K +V + G F + Sbjct: 426 DLVISVSDTGIGIAQDRILLLGQPFVQVDSDYNRKFDGVGLGLSLVKGLVALHGGTFLLT 485 Query: 796 STPAKGTLIEIIFPL 810 S +GT++ I P+ Sbjct: 486 SREGEGTVVSITLPI 500 >gi|154251517|ref|YP_001412341.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154155467|gb|ABS62684.1| integral membrane sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 509 Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 114/384 (29%), Positives = 194/384 (50%), Gaps = 29/384 (7%) Query: 454 LCSILEATSDG--IAIINRE----GIILSTNRAVSKLFGYPVEDILRKPF--TVFLEQNT 505 + L A +G IAI R + S + A + F + D +++ F T L Sbjct: 113 IAKFLVAAPEGNDIAIWERRFLTVALCFSISIASTVFFFWVPGDPVQQAFVLTALLVTLA 172 Query: 506 PSVM------NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF---SSCYSL 556 P+ + + +L + L L ++ G + L ++ +I L S + Sbjct: 173 PTALITSCYKPAFYARVLPVVLAAGLRLVSYGDVQHLSLAAVLLIFTALLAQLTSRLNGI 232 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKES-----------SHKSDFLARVSHEIRTPLTAIIG 605 +H I+ +++KN L A++ES KS FLA +SHE+RTPL AIIG Sbjct: 233 ILHSIT-LREDKNGLIEQLFKAKRESDAARARAEEANRAKSHFLANMSHELRTPLNAIIG 291 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSEV+ ++ FG G P Y EYAN I+RSG +L ++ND+LD+S+IE+G+ + E V + Sbjct: 292 FSEVMASEIFGKHGVPTYKEYANDINRSGQHLLGLINDVLDLSRIEAGRFQITEEEVDIA 351 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + ++++ A +R+ I FA+ +P + D R+++Q +N+L+NAI F+P ++ Sbjct: 352 HLAEDCRRILEIRAQAQRVSITEDFADGLPIVYGDARALRQTWINLLTNAIKFSPPDSEV 411 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + ++ E+ V D G G+ E++K + F Q + G+G+GLGL + K ++ Sbjct: 412 KMFARMEASGEMRFGVHDNGPGIAESEIDKVLHAFTQGASGLAQPGKGSGLGLSIVKGLL 471 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + G+F + S GT E P Sbjct: 472 AVHGGRFELKSQLGAGTQAECTLP 495 >gi|307319436|ref|ZP_07598863.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] gi|306894808|gb|EFN25567.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] Length = 531 Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 95/250 (38%), Positives = 145/250 (58%), Gaps = 1/250 (0%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+SE + + + + AE + K+ FLA VSHE+RTPL AI+GFS+V+ + FG L Sbjct: 221 DVSEEARLQAEAAAKAAHAESANDAKTRFLAAVSHELRTPLNAILGFSDVLAGEYFGKLE 280 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N R EY + I +SG +L +VN +LD+SKIE+G+ L EP + EA++ +++ A Sbjct: 281 NDRQREYVSLIHQSGTHLLSVVNTMLDMSKIEAGRYELLLEPFRVAEAIAACEAMLSHQA 340 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 EK + + + ++ I AD R+ +QI +N++ NAI FT GG + + N + L Sbjct: 341 REKGVRLTSRVTRSVGEINADQRAFQQILINLIGNAIKFTDRGGLVTVDAALEGN-MLKL 399 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ +L+ +PF QI N R EGTGLGL L K + + + G I S Sbjct: 400 TVSDTGIGIAADKLQMLGQPFVQIQNDYTRRYEGTGLGLSLVKGLAELHGGDVSIRSAEG 459 Query: 800 KGTLIEIIFP 809 +GT+I + P Sbjct: 460 EGTVIVVTIP 469 >gi|15964755|ref|NP_385108.1| putative sensor histidine kinase protein [Sinorhizobium meliloti 1021] gi|7531256|sp|Q52969|Y1002_RHIME RecName: Full=Uncharacterized sensor-like histidine kinase R01002 gi|15073933|emb|CAC45574.1| Putative sensor histidine kinase [Sinorhizobium meliloti 1021] Length = 525 Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 95/250 (38%), Positives = 145/250 (58%), Gaps = 1/250 (0%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+SE + + + + AE + K+ FLA VSHE+RTPL AI+GFS+V+ + FG L Sbjct: 215 DVSEEARLQAEAAAKAAHAESANDAKTRFLAAVSHELRTPLNAILGFSDVLAGEYFGKLE 274 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N R EY + I +SG +L +VN +LD+SKIE+G+ L EP + EA++ +++ A Sbjct: 275 NDRQREYVSLIHQSGTHLLSVVNTMLDMSKIEAGRYELLLEPFRVAEAIAACEAMLSHQA 334 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 EK + + + ++ I AD R+ +QI +N++ NAI FT GG + + N + L Sbjct: 335 REKGVRLTSRVTRSVGEINADQRAFQQILINLIGNAIKFTDRGGLVTVDAALEGN-MLKL 393 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ +L+ +PF QI N R EGTGLGL L K + + + G I S Sbjct: 394 TVSDTGIGIAADKLQMLGQPFVQIQNDYTRRYEGTGLGLSLVKGLAELHGGDVSIRSAEG 453 Query: 800 KGTLIEIIFP 809 +GT+I + P Sbjct: 454 EGTVIVVTIP 463 >gi|86356892|ref|YP_468784.1| two-component sensor histidine kinase protein [Rhizobium etli CFN 42] gi|86280994|gb|ABC90057.1| probable two-component sensor histidine kinase protein [Rhizobium etli CFN 42] Length = 513 Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 91/250 (36%), Positives = 146/250 (58%), Gaps = 3/250 (1%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D+S +Q + + + AE + KS FLA VSHE+RTPL AI+GFS+++ + FG Sbjct: 215 LRDVSIEQQLRAEAQNRAADAESANDAKSRFLAAVSHELRTPLNAILGFSDILIGEYFGK 274 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 N R EY + + SG +L +VN +LD+SKIE+G+ L + + +V S++ L Sbjct: 275 FENDRQREYVSLVRESGAHLLSVVNTMLDMSKIEAGRYELILDAFDISSSVRSCESMLAL 334 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A K + + + + I+AD R+++QI +N++ NA+ FT +GG ++S + + + Sbjct: 335 QAKTKGVTLTSRIQRGLGEIVADQRAIQQILINLVGNAVKFTEAGG--VVSVDAAARDGI 392 Query: 738 I-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + L V DTG+G+ +L +PF QI N R EG+GLGL L K +V + G F I S Sbjct: 393 LKLTVSDTGIGIPADKLAMLGQPFVQIQNDYTRRFEGSGLGLSLVKGLVALHGGNFAIAS 452 Query: 797 TPAKGTLIEI 806 P +GT+I + Sbjct: 453 RPGEGTIITV 462 >gi|209966483|ref|YP_002299398.1| bacteriophytochrome Ppr (contains PYP domain) [Rhodospirillum centenum SW] gi|209959949|gb|ACJ00586.1| bacteriophytochrome Ppr (contains PYP domain) [Rhodospirillum centenum SW] Length = 883 Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 95/241 (39%), Positives = 146/241 (60%), Gaps = 10/241 (4%) Query: 571 LSHAKKIAEKESSH---KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 L H K+++++ ++ KS FLA +SHE+RTPL AIIGFS+++ + G L PR +Y Sbjct: 644 LRHVKELSDQLAASNEAKSRFLANMSHELRTPLNAIIGFSDLMMSGMAGTL-PPRIQDYV 702 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV--SEAISLVQLYANEKRIL 685 I SG +L +VND+LD+S+IE+G+M L P SLD + +E + ++ A +L Sbjct: 703 QSIHASGEHLLRMVNDVLDLSRIEAGRMEL--SPESLDAGILAAECVGMLLPRAVRGEVL 760 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + + +P + AD ++QI LNI+ NA+ FTP GG++ + + + VRDTG Sbjct: 761 LEVQAESPLP-LTADALRLRQILLNIIGNAVKFTPPGGRVDVRARALAGGGAVFTVRDTG 819 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 GMT E+ AM+PF Q+ ++ EGTGLGLP+AK++VD + G I + P GT + Sbjct: 820 PGMTPEEVLTAMEPFRQVAQTRAAV-EGTGLGLPIAKSLVDLHAGNLAIETAPGLGTTVT 878 Query: 806 I 806 I Sbjct: 879 I 879 >gi|110633234|ref|YP_673442.1| multi-sensor signal transduction histidine kinase [Mesorhizobium sp. BNC1] gi|110284218|gb|ABG62277.1| multi-sensor signal transduction histidine kinase [Chelativorans sp. BNC1] Length = 548 Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 96/303 (31%), Positives = 157/303 (51%), Gaps = 24/303 (7%) Query: 529 TLGSTKEE---KLLSLRIIIKK---LPFSSCYSLTMHDISEWKQEKNKLS---------- 572 TLG +E + L LR+ + LP + Y + D++ + ++ Sbjct: 213 TLGDLREGAGPRTLRLRLRVPAAPGLPIQAAYRSFIFDVAALQDAAGVVALLREDVSTAA 272 Query: 573 ------HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 A+ +AE + + LA VSHE+RTPL AI+GF++++ N+ FG N + EY Sbjct: 273 AEEALAEARHVAEAACRSRDEMLASVSHELRTPLNAIVGFADLLANEMFGKFANDKQREY 332 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I +G +L +VN +LD+SK++SG + +P ++AV +++ A K + + Sbjct: 333 VEVIREAGTHLLSVVNAILDVSKVQSGAYGVEAKPFHFEDAVRLCMAMTTHQAQAKSVEL 392 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 + A +I + D +V+Q+ +N+LSNA+ FTPSG + T H S + + V DTG+ Sbjct: 393 KADIAGDIGTVRCDKNAVQQVLINLLSNAVKFTPSGE--VKVTAHRSGDRLEFTVSDTGI 450 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G++ +LE PF Q+ N + EGTGLGL L K +V G I S P +GT + + Sbjct: 451 GISAEDLELVGTPFMQVRNDYTRKCEGTGLGLALVKGLVRLQGGGLSIESAPGRGTRVHV 510 Query: 807 IFP 809 P Sbjct: 511 SLP 513 >gi|163795280|ref|ZP_02189247.1| Sensor protein gacS [alpha proteobacterium BAL199] gi|159179266|gb|EDP63797.1| Sensor protein gacS [alpha proteobacterium BAL199] Length = 727 Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 124/411 (30%), Positives = 211/411 (51%), Gaps = 20/411 (4%) Query: 406 NRENSLAMTFIP-FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 R L+++ +P F++ F G+ + D ++++ QL L+A S+G Sbjct: 307 GRRRCLSISGVPVFDEQGLF---QGYRGVGKDLTDLITAEQRVRATNTQLAQALDARSEG 363 Query: 465 IAIINREGIILSTNRAV--------SKLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +A +R+ ++ N+A S L G ED +R + +L E Sbjct: 364 LAFWDRDDRLVMCNQAYRDQSGKSGSTLVPGISYEDYIRAGIEAGEVPAAVGREDAWLQE 423 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 L++R+ L T+ + ++ L +R ++ P LT DISE K+ ++ L A Sbjct: 424 --RLEVRRNL-PYTVEIFRGDRWLLIRE--QRTPDGGTL-LTATDISELKRREDALVKAV 477 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 + A+ + K FLA +SHE+RTPL AIIGF+E+IK+ + + + EYA YI SG Sbjct: 478 EQAQLANRAKMAFLATMSHELRTPLNAIIGFAEIIKSGQIASNSDVQG-EYAGYIHESGA 536 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L ++NDLLD+S+IE+G++ L +P L + E +++ A + + + + Sbjct: 537 HLLAVINDLLDVSRIEAGRLVLDEKPFGLASLIDECDRMIRQKAEADGLRLAMATVDPGL 596 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 I D R+ KQI +N+LSNA+ FT SGG + ++ + + + VRDTG+G+ + + Sbjct: 597 GIHGDRRAFKQILINLLSNAVKFTESGGAVTLTAERDAGGRLRMVVRDTGIGVEANRVVE 656 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 +PF Q+ N R GTGLGL + K +V+A+ G ST +G+ + I Sbjct: 657 LFEPFRQLENVHARRHHGTGLGLYITKNLVEAHGGSIVFESTVHEGSTVTI 707 >gi|307304331|ref|ZP_07584083.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] gi|306902799|gb|EFN33392.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] Length = 531 Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 95/250 (38%), Positives = 145/250 (58%), Gaps = 1/250 (0%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+SE + + + + AE + K+ FLA VSHE+RTPL AI+GFS+V+ + FG L Sbjct: 221 DVSEEARLQAEAAAKAAHAESANDAKTRFLAAVSHELRTPLNAILGFSDVLAGEYFGKLE 280 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N R EY + I +SG +L +VN +LD+SKIE+G+ L EP + EA++ +++ A Sbjct: 281 NDRQREYVSLIHQSGTHLLSVVNTMLDMSKIEAGRYELLLEPFRVAEAIAACEAMLSHQA 340 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 EK + + + ++ I AD R+ +QI +N++ NAI FT GG + + N + L Sbjct: 341 REKGVRLTSRVTRSVGEINADQRAFQQILINLIGNAIKFTDRGGLVTVDAALEGN-MLKL 399 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ +L+ +PF QI N R EGTGLGL L K + + + G I S Sbjct: 400 TVSDTGIGIAADKLQMLGQPFVQIQNDYTRRYEGTGLGLSLVKGLAELHGGDVSIRSAEG 459 Query: 800 KGTLIEIIFP 809 +GT+I + P Sbjct: 460 EGTVIVVTIP 469 >gi|217976388|ref|YP_002360535.1| multi-sensor signal transduction histidine kinase [Methylocella silvestris BL2] gi|217501764|gb|ACK49173.1| multi-sensor signal transduction histidine kinase [Methylocella silvestris BL2] Length = 795 Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 91/239 (38%), Positives = 145/239 (60%), Gaps = 6/239 (2%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K AE + KS+FLA +SHE+RTPL AIIGFSEV++ + FGPLG+ +Y++Y+N I +SG Sbjct: 528 KAEAETANKAKSEFLANMSHELRTPLNAIIGFSEVMQQETFGPLGSKKYVDYSNDIKQSG 587 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L +++D+LD+S++ESG++ L LD AVS A++ V+ A EK I T A + Sbjct: 588 EYLLGVISDVLDMSRLESGRVRLQKSEFELDAAVSGALATVEQIAREKEI---TLVAEAM 644 Query: 695 P--RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 P R AD + ++I +L NA+ FTP G++ + + + + DTG+G+ Sbjct: 645 PGKRANADRAAFEKILAILLRNAVKFTPKDGRVSVRARFVQG-ALNVYIEDTGIGIAPAA 703 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + +PF Q+ S +G+GLGL +A+++VD + G I ST GT++ + P + Sbjct: 704 QARLGRPFEQMGGSLDNGMKGSGLGLAIARSLVDLHGGSMRIRSTVGSGTIVLVHLPQW 762 >gi|73668585|ref|YP_304600.1| sensory transduction histidine kinase [Methanosarcina barkeri str. Fusaro] gi|72395747|gb|AAZ70020.1| sensory transduction histidine kinase [Methanosarcina barkeri str. Fusaro] Length = 1046 Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 95/254 (37%), Positives = 149/254 (58%), Gaps = 2/254 (0%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ ++ + KL AK AE+ ++ KS+FLA VSHE+RTPL +IIGFS+++ + FG Sbjct: 476 TGLDITAHRRSEEKLIQAKLEAEEANNSKSEFLANVSHELRTPLNSIIGFSDILIEKVFG 535 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L N + Y N I SG +L ++ND+LD+SK+E+GKM LH+ S+D E +++ Sbjct: 536 EL-NEKQFRYVNNISTSGKHLLVLINDILDLSKVEAGKMELHYSEFSIDPVFEEVKAVLF 594 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 K + + + + + AD + QI N++SNAI FTP+GG++ + + N Sbjct: 595 PLIQAKPLEVTFNVEPDFTTLEADRGRLIQILYNLISNAIKFTPNGGKVSVYCKESGNRA 654 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +I V DTG+G++ + K +PF Q+ S + GTGLGL L K +V+ + G ++ S Sbjct: 655 LI-SVIDTGIGISAEDQVKLFQPFTQLDASTSRQYCGTGLGLALVKKIVNLHQGDIWVES 713 Query: 797 TPAKGTLIEIIFPL 810 P KG+ PL Sbjct: 714 DPGKGSNFTFALPL 727 >gi|188579782|ref|YP_001923227.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium populi BJ001] gi|179343280|gb|ACB78692.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium populi BJ001] Length = 786 Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 86/236 (36%), Positives = 144/236 (61%), Gaps = 2/236 (0%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K AE + KS+FLA +SHE+RTPL AI+GF+E+++++ +G LG+PRY +Y I +SG Sbjct: 515 KARAEIANQAKSEFLANMSHELRTPLNAIMGFAELMESEVYGSLGSPRYADYCRDIQQSG 574 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L +++D+L +S+IE+ ++ L + LD A++ A++LV A K + I A + Sbjct: 575 TYLLSVIDDILHMSRIEANRVKLVRREIGLDAAIAAAVTLVSKEAASKSVAIDIELAGTL 634 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 +LAD R++ QI LNI+ NA+ FTP GG++ + + N L + DTG+G+ + Sbjct: 635 -NVLADERALHQILLNIIQNAVKFTPEGGRVALR-GRSCNGFAHLFIGDTGIGIPKAAIS 692 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 K +PF Q+ + +G+GLGL +A++ + + G I S GTL+ + P+ Sbjct: 693 KLGRPFEQVETNLTRSYKGSGLGLAIARSTAELHGGSLRIRSEEGVGTLVLVRLPM 748 >gi|148654385|ref|YP_001274590.1| integral membrane sensor hybrid histidine kinase [Roseiflexus sp. RS-1] gi|148566495|gb|ABQ88640.1| integral membrane sensor hybrid histidine kinase [Roseiflexus sp. RS-1] Length = 687 Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 141/245 (57%), Gaps = 3/245 (1%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 +E +L+ + AE S KS+FLA +SHE+RTPL +II F+ +I GP+ P I+ Sbjct: 176 RENVRLATERAAAEHASQIKSEFLANMSHELRTPLNSIINFTRIISTGARGPV-TPEQID 234 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y N + +SG +L ++ND+LD+SKIE+G+M L E + + + ++ EK I Sbjct: 235 YLNRVRQSGEHLLGLINDILDLSKIEAGRMELFRESFQIGDLIQSVLATASGLVKEKPIE 294 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 +R+ A ++P + AD V+Q+ LN+LSNA FT +G I N E+++ V DTG Sbjct: 295 LRSEIAPHLPPVYADRTRVRQVLLNLLSNAAKFTDAG--TITVHAEGCNGEIVIHVSDTG 352 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ LEK + F Q+ N+ R EGTGLGL + + +VD + G+ ++ S G+ Sbjct: 353 IGIAPEHLEKIFEAFRQLDNASNRRYEGTGLGLAICRRLVDLHGGRLWVESAVGVGSTFS 412 Query: 806 IIFPL 810 PL Sbjct: 413 FSLPL 417 >gi|288957454|ref|YP_003447795.1| two-component sensor histidine kinase [Azospirillum sp. B510] gi|288909762|dbj|BAI71251.1| two-component sensor histidine kinase [Azospirillum sp. B510] Length = 545 Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 105/361 (29%), Positives = 187/361 (51%), Gaps = 10/361 (2%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 IL+ ++ I I+ GI++S NRA +FG +D+L +P + + E Sbjct: 173 GILDTVAEAILTIDEAGILISFNRAAEAMFGVVADDVLWRPLGRLIPLAD---LLEAGGE 229 Query: 516 ILSLDLRQTLEKITLGSTKEEKL-------LSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568 L QT+ +T E + + L + ++ Y+ + D++E ++ + Sbjct: 230 RLDFAPGQTMALVTRDRAAEAERADGTRFPVELSVSASEVEGRRLYTAILRDVTERRRAE 289 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L AK AE KS F+A +SHE+RTPL A+IGFS++++ Q G+ + + + Sbjct: 290 AELLAAKAAAEAGDRAKSTFIAVMSHELRTPLNAVIGFSQLLELQAGDAAGDGQLLSCVD 349 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I ++G +L I++D+LD++++ESG ++L V L V ++ ++ A + + + Sbjct: 350 AIGQAGRRLLAIIDDILDMARVESGGLSLSEGVVDLFALVERCVADLRFQATRQGVTVSV 409 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + ++P + D R + Q N+LSNAI F+ G ++ ++ + V L VRD GVGM Sbjct: 410 ALDGDLPPLRGDWRRLGQALGNLLSNAIKFSHPGAEVALAAAIAEDGWVELSVRDQGVGM 469 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 ++++A+ PF QI + EG GLGLPLA+ +V+A+ G + S P G + Sbjct: 470 RPEDIDRALAPFAQIDQAATHHHEGVGLGLPLARRLVEAHGGVLRLDSAPGLGCTATLRL 529 Query: 809 P 809 P Sbjct: 530 P 530 >gi|158422717|ref|YP_001524009.1| sensor protein [Azorhizobium caulinodans ORS 571] gi|158329606|dbj|BAF87091.1| sensor protein [Azorhizobium caulinodans ORS 571] Length = 553 Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 93/255 (36%), Positives = 149/255 (58%), Gaps = 2/255 (0%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI K + + A+ AE+ + KS FLA +SHE+RTPL I+GFSE++ + Sbjct: 276 DIHAVKIQLEEDHRARTEAERANLAKSRFLAAMSHELRTPLNTILGFSELLATDTEQRID 335 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R +YA I SG +L +VND+LD+S++E+G L FE + + V + +V L A Sbjct: 336 ARRKEDYARIIHESGQHLLGVVNDILDLSRVEAGAYELSFEHIDMAHLVDGCVEMVGLDA 395 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + I + T +PR +AD R+V+Q+ LN+LSNA+ F+ GG + ++ + N V L Sbjct: 396 ARRNIKVTTLLPARLPRPMADQRAVRQMTLNLLSNAVKFSEHGGLVEVNVS-AQNGVVSL 454 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 VRD+G GM+ E+E+ +PF Q ++++ R G+GLGL + +A+V + G F + S+ Sbjct: 455 SVRDSGAGMSPAEVERLGEPFFQAGDAER-RARGSGLGLAVVRALVKLHDGAFEVTSSVG 513 Query: 800 KGTLIEIIFPLYDTS 814 GT + I P+ +S Sbjct: 514 GGTTVTISLPVRRSS 528 >gi|144900563|emb|CAM77427.1| PAS [Magnetospirillum gryphiswaldense MSR-1] Length = 1382 Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 112/356 (31%), Positives = 184/356 (51%), Gaps = 16/356 (4%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +I+EA+SD I + +GI+ S N A LFGY E+++ P + + L Sbjct: 421 AIIEASSDAIMSKSLDGIVTSWNPAAEALFGYTAEEMIGTPMSRLIPPGREDEEAQILAR 480 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL 571 I + E T K ++ + + + + + S DI+E KQ + + Sbjct: 481 IRRGEYIDHFE--TFRQRKNGQVFPISVTLSPIRDETGTLMGASKIARDITERKQAEEET 538 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 A+ AE+ + KSDFLA +SHEIRTP+ AIIG + + QR P P+ Y I Sbjct: 539 RLARIAAEEANRTKSDFLANMSHEIRTPMNAIIGMTHL--AQRTNP--TPKQKGYLTKIG 594 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 + +L I+ND+LD SKIE+GK++L P SLD+ + + +V + A +K + + + A Sbjct: 595 NAAEALLGIINDILDFSKIEAGKLDLESIPFSLDDVLGNLVDMVGIKAGQKGVEVVLAVA 654 Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDTGV 746 ++PR ++ D + QI +N+ +NA+ FT G+III + + +++ VRDTG+ Sbjct: 655 PDVPRTLIGDPLRLGQILINLANNAVKFTDK-GEIIIRVVNAPDIPTAGRLMVSVRDTGI 713 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GMT+ ++ F Q S + GTGLGL ++K + + G + S P KG+ Sbjct: 714 GMTSEQVSNLFHSFNQADTSITRKYGGTGLGLAISKQLCEMMGGTVCVESEPGKGS 769 Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust. Identities = 33/138 (23%), Positives = 64/138 (46%), Gaps = 12/138 (8%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 ++ +IL DGI I+ +GI++S N A LFGY E+++ + + + + S + Y Sbjct: 294 RMRTILNNVMDGIITIDGKGIVISVNPAAISLFGYSGEEVVGQNVKMLMPEPNRSSHDGY 353 Query: 513 LT------EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEW 564 L E ++ + + LE G TK+ ++ + + I ++ + + DI+E Sbjct: 354 LARYQSTGESRAIGVGRELE----GLTKDGRVFPMELTITEVEIDGQRMFVGLVRDITER 409 Query: 565 KQEKNKLSHAKKIAEKES 582 K + + I E S Sbjct: 410 KSIASIQARYMAIIEASS 427 >gi|291567579|dbj|BAI89851.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 1778 Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 121/382 (31%), Positives = 198/382 (51%), Gaps = 29/382 (7%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPFTVFLEQNTPSVMNH 511 QL SI EA DGI I+ ++ + N A +FGY ED++ + +P+ + Sbjct: 1270 QLASI-EAAGDGIGIV-QDDLYQYVNHAHLVMFGYSEPEDLVGHSWRKIY---SPTEIQR 1324 Query: 512 YLTEILSLDLRQ---TLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 + E+ + +R T E I G++ E+L SL + KL C DIS+ + Sbjct: 1325 FENEVFPILMRDRYWTGEAIATRQDGTSFAEEL-SLTLTEDKLLICVC-----RDISDRR 1378 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + KL + + + K +FLA +SHE+RTPL AI+G +E ++ + FG LG+ R + Sbjct: 1379 ETEAKLRQTNQELMRATRLKDEFLANMSHELRTPLNAILGMTEGMQEEVFGTLGD-RQKQ 1437 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I+RS + +L+++ND+LD++KIE+G+M L S+ +I+ ++ A +K I Sbjct: 1438 ALQTIERSASHLLELINDILDLAKIEAGEMKLDLNYTSIRPLCQSSIAFIKQQAFKKGIS 1497 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST------THTSNEEVIL 739 I +P + D R ++Q+ +N+L+NA+ FTPS G+I + + V Sbjct: 1498 INVQIPQALPDLYIDERRLRQVLINLLNNAVKFTPSRGKISLEVKLQPPPIDSDKSRVRF 1557 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ +L K KPF QI ++ + EGTGLGL L K +V+ + G + S Sbjct: 1558 AVIDTGIGINEEQLSKLFKPFTQIDSALNRQYEGTGLGLSLVKRIVEMHGGTVNVISKVG 1617 Query: 800 KGTLIEIIFPLYD----TSHPH 817 G+ P D T+ PH Sbjct: 1618 SGSQFIFEIPCDDILIGTNTPH 1639 >gi|284051659|ref|ZP_06381869.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str. Paraca] Length = 1081 Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 121/382 (31%), Positives = 198/382 (51%), Gaps = 29/382 (7%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPFTVFLEQNTPSVMNH 511 QL SI EA DGIAI+ ++ + N A +FGY ED++ + +P+ + Sbjct: 573 QLASI-EAAGDGIAIV-QDDLYQYVNHAHLVMFGYSEPEDLVGHSWRKIY---SPTEIQR 627 Query: 512 YLTEILSLDLRQ---TLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 + E+ + +R T E I G++ E+L SL + L C DIS+ + Sbjct: 628 FENEVFPIVMRDRYWTGEAIATRQDGTSFAEEL-SLTLTEDNLLICVC-----RDISDRR 681 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + KL + + + K +FLA +SHE+RTPL AI+G +E ++ + FG LG+ R + Sbjct: 682 ETEAKLRQTNQELMRATRLKDEFLANMSHELRTPLNAILGMTEGMQEEVFGTLGD-RQKQ 740 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I+RS + +L+++ND+LD++KIE+G+M L S+ +I+ ++ A +K I Sbjct: 741 ALQTIERSASHLLELINDILDLAKIEAGEMKLDLNYTSIRPLCQSSIAFIKQQAFKKGIS 800 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST------THTSNEEVIL 739 I +P + D R ++Q+ +N+L+NA+ FTPS G+I + + V Sbjct: 801 INVQIPQALPDLYIDERRLRQVLINLLNNAVKFTPSRGKISLEVKLQPPPIDSDKSRVRF 860 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ +L K KPF QI ++ + EGTGLGL L K +V+ + G + S Sbjct: 861 AVIDTGIGINEEQLSKLFKPFTQIDSALNRQYEGTGLGLSLVKRIVEMHGGTVNVISKVG 920 Query: 800 KGTLIEIIFPLYD----TSHPH 817 G+ P D T+ PH Sbjct: 921 SGSQFIFEIPCDDILIGTNTPH 942 >gi|163792591|ref|ZP_02186568.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159182296|gb|EDP66805.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 385 Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 93/256 (36%), Positives = 145/256 (56%), Gaps = 2/256 (0%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y T+ D+++ +LS A++ AE S KS FLA +SHE+R+PL AIIGF+E+I + Sbjct: 120 YEGTVQDVTDRVSADRQLSGARRAAEAASDAKSTFLAVMSHELRSPLNAIIGFAEIIAGR 179 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 GP +PRY EYA I SG +L++++D+LD+SKI +GKM+L + V + Sbjct: 180 LLGPT-DPRYFEYAEDIRVSGTHLLELISDILDLSKIGAGKMHLDEQHVDISNLTRRTAR 238 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 L + ++ + + P + AD + QI +N+++NAI FTP GG I ++ T+ Sbjct: 239 LFAANLSTAQLELVNAVPTGFPILRADPVRLGQIIVNLVANAIKFTPPGGTITVNAEDTT 298 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + V+++V DTG+GMT E+ +A +PF Q GTGLGL + + + + G Sbjct: 299 -DAVLIKVSDTGIGMTAQEVARAPEPFVQSGRPFNKSRGGTGLGLSICRDLTSLHGGTLT 357 Query: 794 IFSTPAKGTLIEIIFP 809 I S GT + I P Sbjct: 358 IDSVKGTGTTVTIHLP 373 >gi|17228038|ref|NP_484586.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] gi|17129887|dbj|BAB72500.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] Length = 573 Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 116/368 (31%), Positives = 195/368 (52%), Gaps = 15/368 (4%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH- 511 Q +I E +S GI +++ + I+ N A+ ++ GY E++ K FT ++ Q V + Sbjct: 206 QFRAIFELSSIGIGLVDMKAQIVDANPALCQILGYQREELCGKSFTDYISQQRGDVERYK 265 Query: 512 -YLTEILSLDLRQTLEKITLGSTK-----EEKLLSLRIIIKKLPFSSC----YSLTMHDI 561 +TEI +D +Q EK L + + +L+ R+ + +P SS + + DI Sbjct: 266 QLMTEI-CIDAQQRHEKPHLEIERAFLHRDGRLVWARLSVSVIPGSSGEPEYFLAIIDDI 324 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E KQ + KL ++ AE S KS+FLA +SHE+RTPL AI+G S++++ + G L N Sbjct: 325 TERKQTEMKLRASQAAAEAGSRAKSEFLATMSHELRTPLNAIMGLSQLLQQEIVGSL-NE 383 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + EY N I SG +L ++ND+LD+SK+E+GK L P+ + + ++ + V+ A Sbjct: 384 KQQEYINCIYSSGEHLLALINDILDLSKVEAGKEELFLIPLLVIDVCNDVLLTVRDRAIS 443 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 K + + +AD R +KQ+ LN+L+NAI FT G +I E + + Sbjct: 444 KGLKLTQEIDPEANICIADDRRIKQMLLNLLTNAIKFTSVGEVSLI--VKRVPEGINFII 501 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ + + +PF Q+ + + EGTGLGL L + + + G + ST G Sbjct: 502 SDTGIGIDSNQFPLLFEPFKQLDSRLNRQYEGTGLGLALTRKLARLHGGDVTVTSTVGVG 561 Query: 802 TLIEIIFP 809 + + P Sbjct: 562 SQFTLFLP 569 >gi|163850140|ref|YP_001638183.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163661745|gb|ABY29112.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 648 Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 140/251 (55%), Gaps = 1/251 (0%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+SE ++ +L A+ AE+ K+ FLA VSHE+RTPL AIIGFS+V+ + L Sbjct: 328 DVSEHRRHAQELDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLGGEGAMSLS 387 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R EYA I +SG +LD+VN LLDIS+I G + EPV ++ + L++L A Sbjct: 388 PERSREYAGIIAQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCCDLMRLKA 447 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + I + ++ ++AD R+ +Q+ +N++SNA+ FTP GG++ + + + Sbjct: 448 DASGIALTSAPVPASCALVADARACRQMLINLISNAVKFTPRGGRVEV-MVRRGGAYLDI 506 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V D G+G+T +L + PF Q+ EGTGLGL + + + + G + S P Sbjct: 507 VVSDDGIGITEADLPRLGDPFFQVGGGYGRSHEGTGLGLSVVRGLAGLHGGAVSVESAPG 566 Query: 800 KGTLIEIIFPL 810 KGT + + PL Sbjct: 567 KGTAVTVTLPL 577 >gi|209523399|ref|ZP_03271954.1| histidine kinase [Arthrospira maxima CS-328] gi|209496141|gb|EDZ96441.1| histidine kinase [Arthrospira maxima CS-328] Length = 728 Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 96/279 (34%), Positives = 155/279 (55%), Gaps = 21/279 (7%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 F++C T+ E + + +L + + E+ S KS+FLA +SHE+RTPL +++GF+++ Sbjct: 292 FAACR--TLGTAIERAEAQERLRQSNEKLERASQLKSEFLASMSHELRTPLNSVLGFADL 349 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 +K Q G L N R + +I++SG +L ++ND+LD+SKIESGK L+ E V + E S Sbjct: 350 LKRQNSGTL-NSRQLNQVQFIEKSGWHLLHLINDILDLSKIESGKTELNLESVDIHELCS 408 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 E + +VQ A++K + + I ++ D R V+QI +N+LSNAI FTP GG++ +S Sbjct: 409 ECLKMVQPRADKKCLALSLESDYRITQVWLDRRRVRQIMINLLSNAIKFTPEGGRVRLSG 468 Query: 730 ------------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 + S + L V+D+G+G+ +PF QI +S R Sbjct: 469 HLAYGSQIEGDYRPDCSPINDSTPYLCLEVQDSGIGIPQDRWHLLFQPFQQIDSSLTRRH 528 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 EGTGLGL L K + + + G + S +G+ + PL Sbjct: 529 EGTGLGLLLTKRLAELHGGTVSLQSQVNQGSRFRVWLPL 567 >gi|91201393|emb|CAJ74453.1| similar to ammonium transport protein amtB possibly fused to histidine kinase [Candidatus Kuenenia stuttgartiensis] Length = 679 Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 97/246 (39%), Positives = 148/246 (60%), Gaps = 3/246 (1%) Query: 566 QEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 QEK L A EK + KS+FL +SHE+RTPL AIIGF+EV++++ G L + Sbjct: 431 QEKTADLQMANVALEKANRLKSEFLTTMSHELRTPLNAIIGFAEVLRDEIAGSLSKDQK- 489 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EY I SG+ +LD++N++LD+SKIE+GKM+L +E +++A+++ ++++ AN K I Sbjct: 490 EYVTDIHSSGHHLLDMINNILDLSKIETGKMHLQYEEFCIEDAINDTLTIINASANNKGI 549 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + T+ +N P + AD +QI N+LSNA+ FTP G+I I+ N + + DT Sbjct: 550 SVHTNIQDNTPLLSADKTKFRQILYNLLSNAVKFTPENGKITINVFQKDN-SLQFEIVDT 608 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + EK + F Q S EGTGLGL L K +V+ + GK + ST KG+ Sbjct: 609 GIGIKPEDKEKLFEAFHQADASLTREYEGTGLGLHLTKRLVELHGGKIWAESTFGKGSTF 668 Query: 805 EIIFPL 810 I P+ Sbjct: 669 FFILPI 674 >gi|291566270|dbj|BAI88542.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 728 Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 98/279 (35%), Positives = 155/279 (55%), Gaps = 21/279 (7%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 F++C T+ E Q + L + + E+ S KS+FLA +SHE+RTPL +++GF+++ Sbjct: 292 FAACR--TLGTAIERAQAQENLRQSNEKLERASQLKSEFLASMSHELRTPLNSVLGFADL 349 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 +K Q G L N R + +I++SG +L ++ND+LD+SKIESGK L+ E V++ E S Sbjct: 350 LKRQNSGTL-NSRQLNQVQFIEKSGLHLLQLINDILDLSKIESGKTELNLELVNIHELCS 408 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 E + +VQ A++K + + I + L D R V+QI +N+LSNAI FTP GG++ +S Sbjct: 409 ECLKMVQPRADKKCLALSLESDYRITQALLDKRRVRQIIINLLSNAIKFTPEGGKVRLSG 468 Query: 730 ------------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 + S + L V+D+G+G+ +PF QI +S R Sbjct: 469 HLAYGSQIDGDYRPDCSPINDSTPYLCLEVQDSGIGIPQDRWHLLFQPFQQIDSSLTRRH 528 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 EGTGLGL L K + + + G + S +G+ + PL Sbjct: 529 EGTGLGLLLTKRLAELHGGTVSLQSQVNQGSRFRVWLPL 567 >gi|298505027|gb|ADI83750.1| sensor histidine kinase [Geobacter sulfurreducens KN400] Length = 456 Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 94/259 (36%), Positives = 155/259 (59%), Gaps = 8/259 (3%) Query: 558 MHDISEWKQEK-NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M + E +E+ ++L A+++AE + KS+FLA +SHE+RTPL A+IGF++V+ ++ +G Sbjct: 188 MQHLEERVRERTSELQAAREMAESANLAKSEFLATMSHELRTPLNAVIGFTDVLLSRIYG 247 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + + E+ Y+ +S +L ++ND+LD+SKIE+ +M L V + + S ++ +V+ Sbjct: 248 EVTDIQA-EFLGYVLQSSRHLLSLINDILDLSKIEADRMELEPSDVDIRQLASGSLVMVK 306 Query: 677 LYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A + RI + A + P I AD R +KQI N+L+NA+ FTP GG + +S E Sbjct: 307 ERAQQHRIRLTEEVAPAVPPTITADERKLKQIVFNLLANAVKFTPDGGSVTLSVGLPPAE 366 Query: 736 E----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 E +++ V+DTG+G+ +LE+ PF Q S R EGTGLGLPL + +V+ + G Sbjct: 367 ECEGGIMIAVQDTGIGLAAGDLERIFDPFVQADGSATRRYEGTGLGLPLTRKLVELHGGT 426 Query: 792 FYIFS-TPAKGTLIEIIFP 809 S P G+ +I P Sbjct: 427 IRAESPGPGLGSTFRVIIP 445 >gi|209528198|ref|ZP_03276667.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209491364|gb|EDZ91750.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1778 Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 121/382 (31%), Positives = 198/382 (51%), Gaps = 29/382 (7%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPFTVFLEQNTPSVMNH 511 QL SI EA DGIAI+ ++ + N A +FGY ED++ + +P+ + Sbjct: 1270 QLASI-EAAGDGIAIV-QDDLYQYVNHAHLVMFGYSEPEDLVGHSWRKIY---SPTEIQR 1324 Query: 512 YLTEILSLDLRQ---TLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 + E+ + +R T E I G++ E+L SL + L C DIS+ + Sbjct: 1325 FENEVFPIVMRDRYWTGEAIATRQDGTSFAEEL-SLTLTEDNLLICVC-----RDISDRR 1378 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + KL + + + K +FLA +SHE+RTPL AI+G +E ++ + FG LG+ R + Sbjct: 1379 ETEAKLRQTNQELMRATRLKDEFLANMSHELRTPLNAILGMTEGMQEEVFGTLGD-RQKQ 1437 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I+RS + +L+++ND+LD++KIE+G+M L S+ +I+ ++ A +K I Sbjct: 1438 ALQTIERSASHLLELINDILDLAKIEAGEMKLDLNYTSIRPLCQSSIAFIKQQAFKKGIS 1497 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST------THTSNEEVIL 739 I +P + D R ++Q+ +N+L+NA+ FTPS G+I + + V Sbjct: 1498 INVQIPQALPDLYIDERRLRQVLINLLNNAVKFTPSRGKISLEVKLQPPPIDSDKSRVRF 1557 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ +L K KPF QI ++ + EGTGLGL L K +V+ + G + S Sbjct: 1558 AVIDTGIGINEEQLSKLFKPFTQIDSALNRQYEGTGLGLSLVKRIVEMHGGTVNVISKVG 1617 Query: 800 KGTLIEIIFPLYD----TSHPH 817 G+ P D T+ PH Sbjct: 1618 SGSQFIFEIPCDDILIGTNTPH 1639 >gi|118581133|ref|YP_902383.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] gi|118503843|gb|ABL00326.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] Length = 568 Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 108/353 (30%), Positives = 182/353 (51%), Gaps = 16/353 (4%) Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFL---EQNTPSVMNHYLTEILS--------- 518 +G I+ NR FGY E++L + L +T + T+I+S Sbjct: 214 DGRIIFFNRFAQSFFGYREEEVLGRSIIGTLIPPADSTGHELTSLATDIVSHPEAYAHNI 273 Query: 519 -LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577 +LR+ E + + T + L + + L + +H ++ ++L+ AK+ Sbjct: 274 NENLRKNGELVWVAWTNKPILAPDGSVAEILSIGIDITQLVHTEQALRRTLDELAWAKER 333 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE KS FLA +SHE+RTPL +IIGF+ ++ GP+ N + + S N + Sbjct: 334 AESADHLKSAFLATMSHELRTPLNSIIGFTGILLQGLSGPI-NDEQAKQLGMVKNSANHL 392 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L +++D+LDISKIE+G++ + EP L E++ + + V+ A +K + + A + I Sbjct: 393 LSLISDVLDISKIEAGQLKVEHEPFDLRESILKVVQSVRPLAEKKGLDLSCDLAEQVGNI 452 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D R V+Q+ LN+LSNA+ FT GG + + + + VRD+G+G+ + ELE+ Sbjct: 453 SGDARRVEQVLLNLLSNALKFTEQGG--VRVSCGREGDAFLTSVRDSGIGIKDEELERLF 510 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 KPF Q+ + EGTGLGL ++K +V+ G+ + S+P KG+ PL Sbjct: 511 KPFHQVDTGLSRKYEGTGLGLSISKKLVELMGGEIRVESSPGKGSTFAFTLPL 563 >gi|240137274|ref|YP_002961743.1| Two-component sensor histidine kinase with a PAS domain [Methylobacterium extorquens AM1] gi|240007240|gb|ACS38466.1| Two-component sensor histidine kinase with a PAS domain [Methylobacterium extorquens AM1] Length = 646 Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 140/251 (55%), Gaps = 1/251 (0%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+SE ++ +L A+ AE+ K+ FLA VSHE+RTPL AIIGFS+V+ + L Sbjct: 326 DVSEHRRHAQELDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLGGEGAVSLS 385 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R EYA I +SG +LD+VN LLDIS+I G + EPV ++ + L++L A Sbjct: 386 PERSREYAGIIAQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCCDLMRLKA 445 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + I + ++ ++AD R+ +Q+ +N++SNA+ FTP GG++ + + + Sbjct: 446 DASGITLTSAPVPAGCALVADARACRQMLINLISNAVKFTPRGGRVEV-MVRRGGAYLDI 504 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V D G+G+T +L + PF Q+ EGTGLGL + + + + G + S P Sbjct: 505 VVSDDGIGITEADLPRLGDPFFQVGGGYGRSHEGTGLGLSVVRGLAGLHGGAVSVESAPG 564 Query: 800 KGTLIEIIFPL 810 KGT + + PL Sbjct: 565 KGTAVTVTLPL 575 >gi|254559285|ref|YP_003066380.1| Two-component sensor histidine kinase with a PAS domain [Methylobacterium extorquens DM4] gi|254266563|emb|CAX22327.1| Two-component sensor histidine kinase with a PAS domain [Methylobacterium extorquens DM4] Length = 646 Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 140/251 (55%), Gaps = 1/251 (0%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+SE ++ +L A+ AE+ K+ FLA VSHE+RTPL AIIGFS+V+ + L Sbjct: 326 DVSEHRRHAQELDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLGGEGAVSLS 385 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R EYA I +SG +LD+VN LLDIS+I G + EPV ++ + L++L A Sbjct: 386 PERSREYAGIIAQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCCDLMRLKA 445 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + I + ++ ++AD R+ +Q+ +N++SNA+ FTP GG++ + + + Sbjct: 446 DASGITLTSAPVPAGCALVADARACRQMLINLISNAVKFTPRGGRVEV-MVRRGGAYLDI 504 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V D G+G+T +L + PF Q+ EGTGLGL + + + + G + S P Sbjct: 505 VVSDDGIGITEADLPRLGDPFFQVGGGYGRSHEGTGLGLSVVRGLAGLHGGAVSVESAPG 564 Query: 800 KGTLIEIIFPL 810 KGT + + PL Sbjct: 565 KGTAVTVTLPL 575 >gi|218528744|ref|YP_002419560.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium chloromethanicum CM4] gi|218521047|gb|ACK81632.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium chloromethanicum CM4] Length = 646 Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 140/251 (55%), Gaps = 1/251 (0%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+SE ++ +L A+ AE+ K+ FLA VSHE+RTPL AIIGFS+V+ + L Sbjct: 326 DVSEHRRHAQELDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLGGEGAVSLS 385 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R EYA I +SG +LD+VN LLDIS+I G + EPV ++ + L++L A Sbjct: 386 PERSREYAGIIAQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCCDLMRLKA 445 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + I + ++ ++AD R+ +Q+ +N++SNA+ FTP GG++ + + + Sbjct: 446 DASGITLTSAPVPAGCALVADARACRQMLINLISNAVKFTPRGGRVEV-MVRRGGAYLDI 504 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V D G+G+T +L + PF Q+ EGTGLGL + + + + G + S P Sbjct: 505 VVSDDGIGITEADLPRLGDPFFQVGGGYGRSHEGTGLGLSVVRGLAGLHGGAVSVESAPG 564 Query: 800 KGTLIEIIFPL 810 KGT + + PL Sbjct: 565 KGTAVTVTLPL 575 >gi|83312147|ref|YP_422411.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82946988|dbj|BAE51852.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 454 Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 93/250 (37%), Positives = 140/250 (56%), Gaps = 1/250 (0%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI++ K+ + L AK+ AE + KS FLA VSHE+RTPL A+IGFSE I GP Sbjct: 200 DITQRKRAEAALVAAKQEAEAANRAKSQFLATVSHELRTPLNAVIGFSEAILAGATGPAS 259 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R +EY + I +G + ++ D+LD+S+IE+G+ L E E V A L++ A Sbjct: 260 LERCVEYMDLIHSAGQHLRALIEDILDVSRIEAGRTELDEEEADPAELVRAAARLLEHKA 319 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + A ++PR+ D R ++Q+ LN+ NA+ FTP+GG++ IS H E + L Sbjct: 320 VVTGVDFTVVIAPDLPRMRLDPRRIRQVLLNLAGNALKFTPAGGRVGISAEHVP-EGLAL 378 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ K + F Q +S R +G+GLGL + + V+A+ G + S Sbjct: 379 TVEDTGIGIAPEHHAKVWQAFYQADSSLSRRHQGSGLGLAIVRHFVEAHGGTVSLASEAG 438 Query: 800 KGTLIEIIFP 809 KGT I ++ P Sbjct: 439 KGTRITVLLP 448 >gi|218886197|ref|YP_002435518.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757151|gb|ACL08050.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1548 Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 117/361 (32%), Positives = 183/361 (50%), Gaps = 23/361 (6%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS----VMNH 511 I+ + D + +++ EG I+ N + +L GY + ++ FL + + N Sbjct: 614 GIVHSAPDAMVVVDGEGRIVLCNPQLERLLGYEMGELTGHLVEQFLPEEVRERHVKLRND 673 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP------FSSCYSLTMHDISEWK 565 +L L + E+ +G K+ L L I + KLP S+C +L DIS K Sbjct: 674 FLASPLQV---IGHEREVIGVRKDGTRLPLEISLSKLPPSDRHPMSACGAL--RDISLRK 728 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + +L AK++AE+ + KSDFLA +SHEIRTP+ AIIG + + +PR + Sbjct: 729 RSEAELRRAKEMAEEATRLKSDFLANMSHEIRTPMNAIIGMAHLALKTEL----DPRQAD 784 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y I SG +L I+ND+LD SKIE+GK+ + L+ + +LV A K + Sbjct: 785 YVRKIRASGQHLLGILNDILDFSKIEAGKLTVENTEFELETVLDTVANLVSEKAATKGLE 844 Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--V 741 A N+P +L D + QI +N +NA+ FT G +I + T T + +V+LR V Sbjct: 845 FVLDVAANVPPVLRGDPLRLGQILINYANNAVKFTEHGEIVIHVETLETGDTDVLLRFAV 904 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RDTG+G+T+ + + F Q S + GTGLGL +AK + D G + S P G Sbjct: 905 RDTGIGLTDEQKARLFVSFQQADTSTTRKYGGTGLGLAIAKKLADLMGGGVGVDSVPGGG 964 Query: 802 T 802 + Sbjct: 965 S 965 >gi|167645203|ref|YP_001682866.1| multi-sensor signal transduction histidine kinase [Caulobacter sp. K31] gi|167347633|gb|ABZ70368.1| multi-sensor signal transduction histidine kinase [Caulobacter sp. K31] Length = 579 Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 101/261 (38%), Positives = 154/261 (59%), Gaps = 4/261 (1%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M D + K + L A+ AE ++ ++ FLA +SHE+RTPL AI+GFS++++ + FG Sbjct: 295 VMRDATIDKARETALQQARAEAEALAAGRARFLANMSHELRTPLNAIMGFSDIMRARMFG 354 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + RY EYA I SG +LD++ND+LD+SKIE+ + L EAV+ A+ L++ Sbjct: 355 PLTD-RYGEYAELIHESGRHLLDLINDVLDMSKIEAERFELQRGEFDAREAVTAAMRLLR 413 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 + A+ + +R + AD R++KQI LN++SNA+ FTP GGQ+ + T + E Sbjct: 414 VQADAAGVQLRGVLPPTDLEVDADRRALKQIVLNLVSNALKFTPRGGQVTV-TADGHDGE 472 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 L V DTGVG++ +LE+ +P+ Q Q R +GTGLGL L +A + G+ +I S Sbjct: 473 FELVVADTGVGISPEDLERLGRPYEQAGGVDQ-RAKGTGLGLSLVRAFAKLHGGEMHIES 531 Query: 797 TPAKGTLIEIIFP-LYDTSHP 816 GT + + P L S P Sbjct: 532 RMGAGTSVSVRMPVLLKPSRP 552 >gi|196232623|ref|ZP_03131475.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] gi|196223385|gb|EDY17903.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] Length = 364 Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 113/370 (30%), Positives = 192/370 (51%), Gaps = 38/370 (10%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S++EA+ D + I+ EG I N A + G P E ++ +V + Y TE Sbjct: 11 SLIEASLDPLVTISGEGKITDVNEASVQATGVPRERLI------------GTVFSDYFTE 58 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL---- 571 R+ +K+ + L++R I ++ + +++ S +K +K ++ Sbjct: 59 --PDKAREGYQKVFSEGFVRDYALAIRHITNRV------TDVLYNASVYKDDKGRVLGVF 110 Query: 572 SHAKKIAEKE---------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + A+ + E++ S KS+FLA +SHE+RTPL IIGF+E + + + G L NP+ Sbjct: 111 AAARDVTERKRFEQSLQEASRMKSEFLANMSHELRTPLNGIIGFAEFLVDGKPGTL-NPK 169 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS--LDEAVSEAISLVQLYAN 680 EY I SG +L ++ND+LD++K+E+GKM+L PVS L +A+ E ++ + A Sbjct: 170 QKEYLGDILNSGKHLLQLINDVLDLAKVEAGKMDL--TPVSFVLSQAIDEVCAVAKPLAQ 227 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 +K I +R + A + + D + KQ+ N+LSN I FT GG + I T L Sbjct: 228 KKHIHVRLTVAPELSCVTLDQQKFKQVLYNLLSNGIKFTDDGGNVGIFATPYDGSRFKLS 287 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+DTG+G+ ++++ + F Q+ + R EGTGLGL L + +V+ G + S Sbjct: 288 VKDTGIGIKPEDIQRLFREFEQLESGASRRYEGTGLGLALTRKLVELQGGAINVESEVGV 347 Query: 801 GTLIEIIFPL 810 G+ ++ PL Sbjct: 348 GSTFSVVLPL 357 >gi|21228875|ref|NP_634797.1| two component system histidine kinase [Methanosarcina mazei Go1] gi|20907403|gb|AAM32469.1| Two component system histidine kinase [Methanosarcina mazei Go1] Length = 807 Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 116/383 (30%), Positives = 199/383 (51%), Gaps = 35/383 (9%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 +K E ++ L + +E+++D I +G I S N+ +++GY E+++ K ++ N Sbjct: 440 KKAEEKIKALANAVESSNDAIITGTLDGTITSWNKGAEQIYGYLAEEVMGKNVSILEPDN 499 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM------ 558 L +++Q +KI G K ++ +LR+ KK + S+T+ Sbjct: 500 ------------LKGEIKQLFDKIKQGK-KVKRYETLRL--KKDGIAVNVSVTLSPIFDV 544 Query: 559 -----------HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 DI+E K +N L H K++AE + KS+FLA +SHE+RTPL +IIGFS Sbjct: 545 SGNPVAFSGIARDITEKKITEN-LLHEKQMAEFANRTKSEFLANMSHELRTPLNSIIGFS 603 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 +++ Q +G L N + + + I SG +L+++N +LD+SKIE+ KM L ++ L + Sbjct: 604 DMLYEQAYGEL-NQKQLRAISNISNSGKHLLNLINGILDLSKIEANKMELDYKEFELASS 662 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 + +++ A++K I I T ++I +I AD +I N++ NAI F+ + I Sbjct: 663 LDLIRNILSPIADKKNIEIETGVDSSISKICADEDRFIRIMFNLVDNAIKFSFENSLVKI 722 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 T E V + V DTG+G+ + K KPF Q+ + + +GTGLGL L K +V+ Sbjct: 723 G-TRKKGELVEITVEDTGIGIKTEDQNKLFKPFSQVNSFSSKKFQGTGLGLSLVKQIVNL 781 Query: 788 NMGKFYIFSTPAKGTLIEIIFPL 810 + G + S KG+ P+ Sbjct: 782 HGGYVWFKSEQGKGSTFAFAIPI 804 >gi|209965762|ref|YP_002298677.1| signal transduction histidine-protein kinase BarA [Rhodospirillum centenum SW] gi|209959228|gb|ACI99864.1| signal transduction histidine-protein kinase BarA [Rhodospirillum centenum SW] Length = 780 Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 105/380 (27%), Positives = 187/380 (49%), Gaps = 16/380 (4%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 Q+ +IL A DGI ++R+ I NRA LFG+P + I+ + V L + Sbjct: 336 QIEAILAAVPDGIMTVDRDLRITRVNRAAEALFGWPADSIVGQTVDVLLPEGQAETHGRL 395 Query: 513 LTEILSL---DLRQTLE--KITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWK 565 D R+ + + G ++ L + + + + + D++ + Sbjct: 396 ARAFFKTEEPDARRQMAGWRAVQGRKRDGSLFPVLVTLSATLIDGQPMVVAALKDMTVIE 455 Query: 566 QEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 Q+K +++ K A+ + K+ FLA +SHE+RTPL AIIGFSE++ + Sbjct: 456 QQKADLRALADEVGEQLKAAQAANHAKNRFLAALSHELRTPLNAIIGFSELVATDTDEHI 515 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + EYA + ++G +L +++DLLD+++IE+ ++ L EP D S+A+ ++ Sbjct: 516 DPEKRREYAADVAQAGTHLLALISDLLDLARIEANRIELEIEPCPPDGLTSDAVRMLGPS 575 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--HTSNEE 736 +K I + + A ++PR+ AD R+V+QI N+L NA FTP GG++ ++ + Sbjct: 576 LRDKGIELEVAVAPDLPRVAADRRAVQQILTNLLGNAGKFTPKGGRVTVTVGLDRAVPGQ 635 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V V DTG G+ +L +PF Q+ + ++ G GLGL +++ +V+ G I S Sbjct: 636 VRFTVEDTGCGVPADKLPLLGQPFVQVGDKRRASAPGLGLGLAISRGLVERMGGMLRIES 695 Query: 797 TPAKGTLIEIIFPLYDTSHP 816 + T + P + P Sbjct: 696 ELGRWTRVSFGLPTPGGATP 715 >gi|163795590|ref|ZP_02189556.1| multi-sensor signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159179189|gb|EDP63722.1| multi-sensor signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 577 Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 93/233 (39%), Positives = 143/233 (61%), Gaps = 3/233 (1%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A+ S KS+FLA VSHE+RTPL AI+GFSE+I Q FGP R YA I+ SGN + Sbjct: 338 ADSASRSKSEFLALVSHELRTPLNAILGFSEIIAQQTFGPSTADRAQSYARDINESGNHL 397 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ND+LD+SKIE+G+ L E L + + +L++ EK I + T +I + Sbjct: 398 LSLINDILDLSKIEAGRYELMEETFVLRDVLDRCATLLRERVAEKNIGL-TCHGTSIC-L 455 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 AD R+V Q+ +N+LSNA+ FT G++ + T +++ + + V DTGVGM++ +L++++ Sbjct: 456 NADRRAVMQVVINLLSNAVKFTSPRGRVELFAT-VAHDAIEIAVSDTGVGMSHEDLQRSL 514 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +PFGQ + GTGLGL +A+ + + G + ST +GT+ I PL Sbjct: 515 QPFGQADSLHTRSSGGTGLGLNIAEMLTKLHGGSLGLRSTLGEGTVATIRLPL 567 >gi|119944259|ref|YP_941939.1| multi-sensor histidine kinase [Psychromonas ingrahamii 37] gi|119862863|gb|ABM02340.1| multi-sensor histidine kinase with CHASE and PAS/PAC sensory domains [Psychromonas ingrahamii 37] Length = 1255 Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 114/388 (29%), Positives = 193/388 (49%), Gaps = 29/388 (7%) Query: 442 INKRKMEIEVMQ-----LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 I K+K E +Q + +IL DGI IN GI+ S N A +FGY +++ Sbjct: 471 ITKQKFATEQLQDSAALIEAILNTVVDGIITINEYGIVESINPAAEHIFGYSATEVIGHN 530 Query: 497 FTVFLEQNTPSVMNHYL--------TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 T+ + ++ S + Y+ +I+ +D +I G K + + + + K+ Sbjct: 531 ITMLMPESYRSQHDGYIEHFNITGEAKIVGID------RIIEGKRKNGSIFPMELGVSKV 584 Query: 549 PFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 ++ + DI+E K+ K L AK AEK + KS FLA +SHEIRTP+ +IG Sbjct: 585 LLGEKKLFASVVRDITEQKRAKQALISAKTEAEKANLAKSQFLAAMSHEIRTPMNGVIGM 644 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 +V++ ++ + I S +L I+ D+LD SKIE+GK+++ + P+++ E Sbjct: 645 VDVLQQSSLKGF----QVDMVDTIRDSAFSLLSIIEDILDFSKIEAGKLDIEYAPMAVAE 700 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG--- 722 V +A ++ A +K++ + IP I L D ++QI +N+ +NAI F+ Sbjct: 701 VVEKACFMLAHLAEKKKVELTLFTDPAIPDITLGDANRLRQIVVNLTNNAIKFSSGSDRP 760 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 G++ + T + +RV D G+GM L K PF Q + R GTGLG+ +A+ Sbjct: 761 GRVSVQALMTDPTMLEIRVIDNGIGMNESALSKLFMPFYQADVTTTRRFGGTGLGITIAR 820 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +V G+ + ST KG++ + PL Sbjct: 821 NLVQLMGGEITVQSTLNKGSIFSVHLPL 848 >gi|332703945|ref|ZP_08424033.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554094|gb|EGJ51138.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 848 Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 116/396 (29%), Positives = 204/396 (51%), Gaps = 16/396 (4%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + +E E + +R + + +++++ SD I + +R+ I N V L G P Sbjct: 213 RGAVERESAGRLVAERAFQQVQQEYKTLMDSASDLILVHDRDLRIRYVNPVVESLAGQPP 272 Query: 490 EDILRKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 E L + V + E+ V N +L ++L ++ L S + ++ + R+ + Sbjct: 273 EHYLGQGIEVIIPEREVAGVFNSHLRQVLQSGKDSSI-SFQLDSVRHKRHMQARLTPVQD 331 Query: 549 PFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 S S+ + DI+ +K+ +++L AK+ AE+ + KS+FLA +SHEIRTPL A++G Sbjct: 332 AAGSMGSVLAVVRDITRFKRLEDRLRQAKREAEESNRAKSEFLANMSHEIRTPLNAVLGL 391 Query: 607 SEVIKNQRFGPLGNPR-YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 +E R + PR EY I S + +L I++D+LD+SKIE+GK+++H + L Sbjct: 392 AE-----RLSFITEPRERDEYVRMIKHSAHALLAIIDDILDLSKIEAGKLDVHEQEFELA 446 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724 + + +S + A EK + + S N +P +LAD Q+ N++SNAI FT G Sbjct: 447 ALLEKVVSPYRYQAQEKGLELAVSVGNAVPAWMLADPDKFSQVLTNLVSNAIKFTEE-GS 505 Query: 725 IIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 + IS T+ + + +++ V DTG+G+ + F Q+ +S GTGLGL + Sbjct: 506 VEISVTNDNRDSRDMGLLVCVHDTGLGIPWDMQARLFNSFSQLDSSYSKSFGGTGLGLAI 565 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 +K +V+ G+ ++ S P KG+ P+ S P Sbjct: 566 SKRLVEMLGGRIWVESMPGKGSSFSFTLPIASVSKP 601 >gi|71908460|ref|YP_286047.1| PAS [Dechloromonas aromatica RCB] gi|71848081|gb|AAZ47577.1| PAS protein [Dechloromonas aromatica RCB] Length = 764 Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 114/395 (28%), Positives = 202/395 (51%), Gaps = 14/395 (3%) Query: 430 QNGIEPEDVDTRINK---RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 Q I E++ R++ RK +E Q+ +L AT+ G+ ++ ++ +I S + +F Sbjct: 229 QKPILAEEIRARLHNLLTRKRAVERSQM--LLAATALGVVVVGQDAVIESMDDNSLDMFR 286 Query: 487 YPVEDILRKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII- 544 + +L +P ++ L E+ P ++ + +++ + L+ + E+ + L II Sbjct: 287 PATQPVLGQPLSILLPEEKNPGLLGQMMQRVMAEERISGLKAVGQRGDGEDFPVELTIIE 346 Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 I ++L DISE + L+ A + AE+ K+ FLA +SHEIRTPL AII Sbjct: 347 INSGDGVRHFALLARDISEEQALATYLTRASEAAERAEQMKTAFLANMSHEIRTPLNAII 406 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G + ++ + +Y +ID +G +L ++ ++LD+SKIE+G++ L P+++ Sbjct: 407 GMAHILSRTEL----DTAQKKYVGHIDAAGEHLLGLITNVLDMSKIEAGRLELENIPLAV 462 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG- 723 + V E +S+V A EK + +R + ++ D ++Q LN +SNAI FT G Sbjct: 463 ENIVFEVLSMVADQAAEKGLDVRIGELDAPSGLVGDPVRLRQALLNYVSNAIKFTADGSI 522 Query: 724 QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 + + T S + V+LR V DTG+G++ ++ F Q NS R GTGLGL + Sbjct: 523 DVRVITQAVSEDSVLLRFEVADTGIGISAEARDEIFSAFRQADNSTTRRYGGTGLGLAIT 582 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + + + G+ + STP +G+L L S P Sbjct: 583 RQLAELMGGEVGVSSTPGQGSLFWFTASLKRASAP 617 >gi|150395841|ref|YP_001326308.1| histidine kinase [Sinorhizobium medicae WSM419] gi|150027356|gb|ABR59473.1| histidine kinase [Sinorhizobium medicae WSM419] Length = 525 Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 96/253 (37%), Positives = 147/253 (58%), Gaps = 5/253 (1%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D+SE + + + + AE + K+ FLA VSHE+RTPL AI+GFS+V+ + FG L Sbjct: 214 RDVSEGARLQAEAAARAAHAESANDAKTRFLAAVSHELRTPLNAILGFSDVLAGEYFGKL 273 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N R EY + I +SG +L +VN +LD+SKIE+G+ L EP + EA++ +++ Sbjct: 274 ENDRQREYVSLIHQSGTHLLSVVNTMLDMSKIEAGRYELLREPFRVAEAIAACEAMLSHQ 333 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A EK + + + ++ I AD R+V+QI +N++ NAI FT GG + T + E + Sbjct: 334 AREKGVRLASRVTRSVGEINADQRAVQQILINLVGNAIKFTDRGGLV---TVDAAREGAL 390 Query: 739 LR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 L+ V DTG+G+ +L+ +PF QI N R EGTGLGL L K + + + G I S Sbjct: 391 LKLTVSDTGIGIAADKLKMLGQPFVQIQNDYTRRYEGTGLGLSLVKGLAELHGGDVSIRS 450 Query: 797 TPAKGTLIEIIFP 809 +GT + + P Sbjct: 451 AEGEGTEVVVSIP 463 >gi|4545094|gb|AAD22391.1|AF064527_1 PPH [Rhodospirillum centenum] Length = 884 Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 95/242 (39%), Positives = 147/242 (60%), Gaps = 11/242 (4%) Query: 571 LSHAKKIAEKESSH---KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 L H K+++++ ++ KS FLA +SHE+RTPL AIIGFS+++ + G L PR +Y Sbjct: 644 LRHVKELSDQLAASNEAKSRFLANMSHELRTPLNAIIGFSDLMMSGMAGTL-PPRIQDYV 702 Query: 628 NYIDRSG-NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV--SEAISLVQLYANEKRI 684 I SG +L+ +VND+LD+S+IE+G+M L P SLD + +E + ++ A + Sbjct: 703 QSIHASGEHLLRMVVNDVLDLSRIEAGRMEL--SPESLDAGILAAECVGMLLPRAVRGEV 760 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 L+ + +P + AD ++QI LNI+ NA+ FTP GG++ + + + VRDT Sbjct: 761 LLEVQAESPLP-LTADALRLRQILLNIIGNAVKFTPPGGRVDVRARALAGGGAVFTVRDT 819 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G GMT E+ AM+PF Q+ ++ EGTGLGLP+AK++VD + G I + P GT + Sbjct: 820 GPGMTPEEVLTAMEPFRQVAQTRAAV-EGTGLGLPIAKSLVDLHAGNLAIETAPGLGTTV 878 Query: 805 EI 806 I Sbjct: 879 TI 880 >gi|294495114|ref|YP_003541607.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292666113|gb|ADE35962.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 1034 Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 125/421 (29%), Positives = 209/421 (49%), Gaps = 34/421 (8%) Query: 416 IPFEKANQFPEN--MPQNGIEP--------------EDVDTRINKRKMEIEVMQ----LC 455 + +E+ +FP M Q + P +D+ RI K E E+ Q Sbjct: 619 VSYEETLEFPAGTRMWQTALTPIFQHGEVRYIVGSSQDITGRI---KAENELRQSKQKYQ 675 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-QNTPSVMNHYLT 514 S++E ++ + +++ + + + GY E+++ K F F+ + M + Sbjct: 676 SLVENLNEIVYTLDQNATVTYVTPNIENISGYKPEEVIGKNFVEFVHPDDIRGRMEQFRK 735 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574 + +D +T + + IIK L M DI++ K+ + +L A Sbjct: 736 VLSGIDEPSEYRFLTKSGDTVWVRTNAKPIIKDDKIVGIQGLLM-DITDVKKAEKQLEDA 794 Query: 575 -------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 AE + KS FLA +SHE+RTPL ++IGFS+++ + G L + + +Y Sbjct: 795 VLRANEMAIQAEYANKTKSQFLANMSHELRTPLNSVIGFSDILLKEIKGELNDSQK-KYI 853 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + I G +LD++ND+LD+SKIE+GKM L E ++LD SE S++ A +K I + Sbjct: 854 SNISNGGRHLLDLINDILDLSKIEAGKMELACEDLNLDSVFSEIESVISPQAQKKSIDLE 913 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 S +I I AD +KQI N+LSNAI FT G++ +S ++V + V+DTG+G Sbjct: 914 ISKPADI-EINADKSKIKQIIFNLLSNAIKFTDENGKVSMSAGEVDRDQVEITVKDTGIG 972 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +L+K PF Q +S + GTGLGLPL K V+ + G+ + S KG++ ++ Sbjct: 973 IPEDKLDKIFDPFMQADSSTSRKYGGTGLGLPLVKEYVEMHGGEILVESEVGKGSVFTLL 1032 Query: 808 F 808 F Sbjct: 1033 F 1033 >gi|316934984|ref|YP_004109966.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] gi|315602698|gb|ADU45233.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] Length = 607 Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 100/254 (39%), Positives = 147/254 (57%), Gaps = 1/254 (0%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M DI+E K + L A+ A++ KS FLA +SHE+RTPL AIIGFS++I + Sbjct: 325 VMRDITERKLHEQALDEARAEADRADDAKSRFLATMSHELRTPLNAIIGFSDMIVQEDEL 384 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 LG R EYA I+ SG +L +VN +LD+SK+ESG + EP + A+ +L+ Sbjct: 385 RLGAERRKEYAQLINDSGQHLLSVVNGILDMSKMESGNFEIVPEPFAPRPALLNCCNLLA 444 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 L A + I + T N+P ++ D R+ KQI LN++SNA+ FT GG + +S S Sbjct: 445 LKARDSGIDLVTRAPENLPDVVGDPRAFKQILLNLVSNAVKFTERGGTVTVSAAVEST-R 503 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 ++L V DTGVG+ +L++ PF Q + Q R EGTGLGL + K++V + G+ + S Sbjct: 504 LVLCVTDTGVGIAEEDLKRLGDPFFQAGKTYQRRHEGTGLGLSIVKSLVRMHGGEIDVRS 563 Query: 797 TPAKGTLIEIIFPL 810 GT + + PL Sbjct: 564 QIDCGTTVTVSLPL 577 >gi|149174913|ref|ZP_01853537.1| ammonium/methylammonium permease [Planctomyces maris DSM 8797] gi|148846250|gb|EDL60589.1| ammonium/methylammonium permease [Planctomyces maris DSM 8797] Length = 989 Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 133/432 (30%), Positives = 217/432 (50%), Gaps = 35/432 (8%) Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM-- 452 AS LH SL T I EK N+ N E V + N+ E++ Sbjct: 401 GASTELH--------SLLETMISHEKGNKQSRADVDNFTEAGIVGYQYNRVLDAQEILLS 452 Query: 453 -------QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + SI++ D I I+ EG I NR LFGY + + K + + Sbjct: 453 DVKDREVRYRSIMDNVMDAIITIDLEGKIEEFNRGAEYLFGYYNHEAIGKSIDLLIPPLH 512 Query: 506 PSVMNHYLTEILSLDLRQTL---EKITL----GSTKEEKLLSLRIIIKKLPFSSCYSLTM 558 + + Y + L+ L + + ++I GST +L +++ ++ + Sbjct: 513 QKIQHKYSSGELNPQLVRAIGSRQEIVAQRNDGSTFPAELAVSSVLLAD---REIFTGII 569 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DISE K + L+ A+K AE S KS+FLA +SHEIRTP+TAI+GF++++ N L Sbjct: 570 QDISERKDYERSLNEARKRAEAASEAKSEFLANMSHEIRTPMTAILGFTDILLNN----L 625 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 IE AN + R+G ++ ++ND+LD+SKIE+ K+ L V+ E + + ++L+Q+ Sbjct: 626 RKKEDIESANIVKRNGEYLIGVINDILDLSKIEARKLELEQVRVNTIELIRDIVALMQIK 685 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSN-- 734 A+ K + + SF N IP I+ D ++QI +N+L NAI FT SG ++ T H + Sbjct: 686 ADLKELELVVSFDNPIPETIVTDPTRLRQILINLLGNAIKFTDSGYVELRTRTIHLEDGF 745 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 ++ V DTG+G++ L + +PF Q +S + GTGLGL ++K + + G+ ++ Sbjct: 746 AQLQFDVIDTGIGISETALAQIYQPFTQADSSTTRKYGGTGLGLAISKRLSEMLGGRIHV 805 Query: 795 FSTPAKGTLIEI 806 ST G+ I Sbjct: 806 TSTIGSGSTFTI 817 >gi|224370415|ref|YP_002604579.1| sensory box histidine kinase (GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] gi|223693132|gb|ACN16415.1| sensory box histidine kinase (GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] Length = 1003 Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 124/435 (28%), Positives = 212/435 (48%), Gaps = 41/435 (9%) Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + +Q + + Q + E VD + K + S + + GIA ++ EG + N Sbjct: 564 QSLSQANDQLKQEILHREKVDKALYKSEARFR-----STFQQAAVGIAHVSPEGKFIRIN 618 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL-RQTLEKITLGSTKEEK 537 + +++GY + ++++K F + + +++ + R ++EK + Sbjct: 619 ERLCQIWGYGLRELIQKNFQEITHSEDLNADLDLVQQVIDGKISRYSMEKRYISKNGYPV 678 Query: 538 LLSLRI-IIKKLPFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 +L + +++ + Y +++ DIS+ K+ + +L AK AEK + KS+FLA + HE Sbjct: 679 WCNLTVSLLRNSDGTPRYFISVVEDISQRKKAEERLLSAKIEAEKANIAKSNFLASMGHE 738 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 +RTPL A+IGFSEV+ +Q FGPL NP+ EY N I SG +L ++ND+LD+SK+E+G M Sbjct: 739 LRTPLNAVIGFSEVLLDQFFGPL-NPQQAEYVNDILHSGRHLLTLINDILDLSKVEAGWM 797 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL--ADLRSVKQIALNILS 713 P LD + E++ + EK+I + +I +D +KQI ++LS Sbjct: 798 RFLPVPTPLDSVMGESLKTIGPMIKEKQIRLIRDLPKEFSKIHLHSDPVKLKQIFNHLLS 857 Query: 714 NAIHFTPSGGQIIIS--------------------------TTHTSNEEVILRVRDTGVG 747 NA FTP GG I I+ T V + +RDTG G Sbjct: 858 NAAKFTPKGGTITITGKIVSDVCLPSNMALKDTPLPDSLRTCTQPGVPGVEICIRDTGTG 917 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-AKGTLIEI 806 +T+ +K + F Q+ + GTGLGL LA+ V+ + G+ ++ S KG+ Sbjct: 918 LTSGHSDKIFESFFQVEGGISDKSPGTGLGLSLARRFVEMHKGRIWVHSDGLGKGSCFYF 977 Query: 807 IFPLY---DTSHPHD 818 PL ++ HP + Sbjct: 978 TIPLALDEESLHPEE 992 >gi|188579941|ref|YP_001923386.1| multi-sensor signal transduction histidine kinase [Methylobacterium populi BJ001] gi|179343439|gb|ACB78851.1| multi-sensor signal transduction histidine kinase [Methylobacterium populi BJ001] Length = 643 Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 139/251 (55%), Gaps = 1/251 (0%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+SE ++ +L A+ AE+ K+ FLA VSHE+RTPL AIIGFS+V+ + L Sbjct: 326 DVSEHRRHAQELDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLSGEGAVSLS 385 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R EYA I +SG +LD+VN LLDIS+I G + EPV ++ + L++L A Sbjct: 386 PERSREYAGIIAQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRSCCDLMRLKA 445 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + I + ++ ++AD R+ +Q+ +N++SNA+ FTP GG++ + + + Sbjct: 446 DASGIALVSAPVPAGCALVADARACRQMLINLISNAVKFTPRGGRVEV-MVRRGGAYLDV 504 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V D G+G+T +L + PF Q EGTGLGL + + + + G + S P Sbjct: 505 VVSDNGIGITEADLPRLGDPFFQAGGGYGRSHEGTGLGLSVVRGLAGLHGGAVSVESAPG 564 Query: 800 KGTLIEIIFPL 810 KGT + + PL Sbjct: 565 KGTAVTVTLPL 575 >gi|309790727|ref|ZP_07685276.1| PAS sensor protein [Oscillochloris trichoides DG6] gi|308227218|gb|EFO80897.1| PAS sensor protein [Oscillochloris trichoides DG6] Length = 1050 Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 123/392 (31%), Positives = 202/392 (51%), Gaps = 35/392 (8%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTN-RAVSKLFGYPVEDILRKPFTVFLE 502 ++ + + QL ++ +A D I+ R+G+I+ + A ++LF P + FL Sbjct: 404 RQALAVSEAQLRALRDAMPDMFFIMRRDGMIIDYHCPASAQLFIQP---------SAFLG 454 Query: 503 QNTPSVMNHYLTE--ILSLDLRQTLEKIT----LGSTKEEKLLSLRIIIKKLPFSSCYSL 556 QN V+ +++ + +LD T + I S +EE+ R++ + Y + Sbjct: 455 QNVVDVLPPDVSQPALTALDQVSTGKVIATFEYCLSMEEERNFEARVVHI---VADRYMV 511 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DI++ K + L AK+ AE KS FLA +SHEIRTPLTAIIG S ++ Sbjct: 512 LVRDITQQKVAERALVQAKEAAETADRAKSTFLAHISHEIRTPLTAIIGMSSLLLE---S 568 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL NP E A I+ G +L ++ D+LD+SKIE+G+++L +P L A+ LVQ Sbjct: 569 PL-NPEQYENAQIINAGGKTLLSLIGDILDVSKIEAGQLDLVMQPFDLRAVCRLALDLVQ 627 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A++KR+ + ++P ++ D ++Q+ +N+L NA+ FT G +I H E Sbjct: 628 QSAHDKRLRLNLQITPDLPASLIGDSGRLRQVLVNLLFNAVKFTEQGVVELIVRGHFQAE 687 Query: 736 E---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 E V + V DTGVG+ ++E+ KPF QI + + G+GLGL +++ +V+ G Sbjct: 688 ERYHVEIIVHDTGVGIPADQIEQIFKPFVQIDHHMTEQTPGSGLGLTISQQLVELMGGTL 747 Query: 793 YIFSTPAKGTLIEI--------IFPLYDTSHP 816 + ST GT + I P+ SHP Sbjct: 748 EVSSTLGVGTTFTLTISMEVAEIAPVRHDSHP 779 >gi|87309080|ref|ZP_01091217.1| sensory box sensor histidine kinase/response regulator [Blastopirellula marina DSM 3645] gi|87288071|gb|EAQ79968.1| sensory box sensor histidine kinase/response regulator [Blastopirellula marina DSM 3645] Length = 1013 Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 112/385 (29%), Positives = 198/385 (51%), Gaps = 10/385 (2%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-R 494 E+ R + K E+ +L + + I ++ G I N A ++L GY + +I+ + Sbjct: 341 EERQAREDLEKSNREIHKLSLVAAKARQSVIIADKFGRIEWVNDAFTQLTGYALPEIIGQ 400 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSS 552 KP T+ T Y+ E L R ++E + + E+ ++L I + + Sbjct: 401 KPGTLLQGPETDPSTAAYIGERLRSRERVSVEIVNYSKSSEKYWIALEIEPVFDEQHRLI 460 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 + T +++ K+ + +L AK+ AE ++ KS+FLA +SHEIRTPL ++GF++++ Sbjct: 461 QFIATQTNVTHRKKHEAELRRAKETAEAANAAKSEFLANMSHEIRTPLNGLLGFTDLLLR 520 Query: 613 QRFGPLGNP-RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 G +P + EY I SG +LD++NDLLD+SKIE+GK+ P V+E Sbjct: 521 ---GAANDPQKRDEYLQIIRTSGRNLLDVINDLLDLSKIEAGKLETESLPCDPQAVVAEV 577 Query: 672 ISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 +S++++ A+EK + + ++ + P+I+ D ++Q+ N++ NAI FT G I + Sbjct: 578 VSILRVKADEKALRLTCDWSGEVPPQIVTDSVRLRQLLTNLIGNAIKFTQFGSVSIDAGW 637 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 H +++ +RDTG+G+ +L+ PF Q + R GTGLGL + + + G Sbjct: 638 HAPLQQLTFVIRDTGIGIPEEKLDLIFDPFTQADATTTRRFGGTGLGLAICRRIARLLGG 697 Query: 791 KFYIFSTPAKGT--LIEIIFPLYDT 813 + S G+ + I PLYD Sbjct: 698 DVSVESEIGAGSTFTVTIAAPLYDA 722 >gi|163795844|ref|ZP_02189808.1| adenylate/guanylate cyclase [alpha proteobacterium BAL199] gi|159178877|gb|EDP63413.1| adenylate/guanylate cyclase [alpha proteobacterium BAL199] Length = 700 Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 97/250 (38%), Positives = 147/250 (58%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D +Q L+ AK AE + KS FLA +SHE+RTPL A+IGFS+++ N+ FG LG Sbjct: 438 DTRRMEQSVEALASAKSEAEAANRAKSAFLANMSHELRTPLNAVIGFSDLLGNEPFGKLG 497 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + RY YA I +G +L +VNDLLD S+IE+GK+ LH V + V +++ A Sbjct: 498 DDRYKTYAEDIRMAGEHLLTLVNDLLDHSRIEAGKVELHEIDVDVRAVVRRVGRMMEDLA 557 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + + + ++PR+ AD R V+Q+ LN++SNA+ FT SGG++ + ++ + L Sbjct: 558 KNRGLTLDLHIDADLPRLHADERLVRQVLLNLVSNAVKFTQSGGRVEVVGRLEPDDRIAL 617 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+GM ++ +AM+PF Q+ + GTGLGLPL +MV + G + S Sbjct: 618 VVADTGIGMDRGDIARAMEPFVQLNDRYDKSYGGTGLGLPLVNSMVRLHGGTLTVDSMKG 677 Query: 800 KGTLIEIIFP 809 GT + + FP Sbjct: 678 HGTTVSVRFP 687 >gi|20091183|ref|NP_617258.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19916292|gb|AAM05738.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 725 Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 94/258 (36%), Positives = 148/258 (57%), Gaps = 4/258 (1%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 ++ DI+E K+ + K+ AK +AE + KS+FL+ +SHE+RTPL A+IGF++++ + FG Sbjct: 468 SILDITEVKKSEEKMLQAKILAENSNRSKSEFLSNMSHELRTPLNAVIGFADILNEEGFG 527 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL N + + I SG +L ++N++LD+SKIE+GKM S+ E E ++ Sbjct: 528 PL-NKKQKRFVGNISTSGKHLLKLINEILDLSKIEAGKMEFKCTEFSVKEKFDEIKDILF 586 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 ++K+I I + I I +D Q+ N++SNAI FT GG + +S + + Sbjct: 587 PVFSKKKIRIEFEIGDGITTIYSDEGKFVQVLYNLVSNAIKFTEEGGFVKVS-ARKNGDM 645 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + L V+DTG+G+T +L K PF Q+ + + EGTGLGL L MV G+ +FS Sbjct: 646 LQLSVKDTGIGITEEDLMKIFHPFVQVDSFSTRQYEGTGLGLALVDQMVQLMGGEICVFS 705 Query: 797 TPAKGTLIEIIFPL--YD 812 P G+ + PL YD Sbjct: 706 QPGIGSEFICMIPLKNYD 723 >gi|163793550|ref|ZP_02187525.1| two component sensor kinase [alpha proteobacterium BAL199] gi|159181352|gb|EDP65867.1| two component sensor kinase [alpha proteobacterium BAL199] Length = 414 Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 112/361 (31%), Positives = 192/361 (53%), Gaps = 14/361 (3%) Query: 456 SILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 +ILE + D I + N E G+I+ N LF +++ + E + + Y Sbjct: 54 AILETSGDAIVLANAETGLIVEANDRAGVLFACDASELVGMHQS---ELHPSEQRDRYRW 110 Query: 515 EILSL--DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNK 570 + + R L +T+ ++ + S+ I + + +L DIS K + + Sbjct: 111 DFRNARNAGRMLLPDVTI-QRRDGTVSSVEITARTIEIDGVLTLVGFYRDISHRKAREYE 169 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A++ A S K+ FLA +SHE+RTPL AIIG SE+I+++ +G +G+P+Y EYA I Sbjct: 170 LIAAREAARAASDSKTRFLANMSHELRTPLNAIIGMSELIRSELWGAVGHPKYAEYATDI 229 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI--LIRT 688 + SG +LD++ND+LD S++E GK+ LH E + + + + ++ + E+ + ++R Sbjct: 230 NDSGLHLLDLINDILDFSRVEMGKVTLHDEDIDVTDLLEQSRRTIAGLLEERDLTCVVRV 289 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 S + P + AD R+++Q+ LN+LSNA+ TP GG++ I++ + + V DTG G+ Sbjct: 290 SGS---PILTADRRAMRQMLLNLLSNAVKHTPPGGRVTITSDVDGQGGLAIVVEDTGRGI 346 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 LE +PF R G GLGL + K +V+ + G+ I S+ GT + + F Sbjct: 347 PAERLEWITEPFNVDEEISVTRQGGAGLGLAITKRLVERHGGQISIDSSEGFGTSVRLSF 406 Query: 809 P 809 P Sbjct: 407 P 407 >gi|315121866|ref|YP_004062355.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495268|gb|ADR51867.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 498 Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 89/249 (35%), Positives = 147/249 (59%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E + K+ ++ AE+ + KS FLA +SHE+RTPL AI+GFSEVI + GPL N Sbjct: 225 IAELEVAKSLSDKTRQRAEEANLAKSRFLASMSHELRTPLNAILGFSEVIGLETMGPLNN 284 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 Y EY I RSG +L+++N++LD+S+IE+G+ L +SL + + E + ++QL A Sbjct: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIMHECMIMLQLRAQ 344 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 EK I I + + AD + ++Q+ LN+LSNA+ FT GG++ + T+ + Sbjct: 345 EKYIEIFQQIDPTLSSVWADEKGMRQVILNLLSNAVKFTSIGGKVRVKVGWTAGGGQYIS 404 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 ++D G G++ E+ + FGQ + + +G GLGLP+ ++++ + G+F I S + Sbjct: 405 IKDNGPGISEGEMPTVLSSFGQGSIAIKSAEQGVGLGLPIVQSIMANHGGQFRIKSKLQE 464 Query: 801 GTLIEIIFP 809 G + I P Sbjct: 465 GVEVIAILP 473 >gi|262173308|ref|ZP_06040985.1| hypothetical protein VII_000398 [Vibrio mimicus MB-451] gi|261890666|gb|EEY36653.1| hypothetical protein VII_000398 [Vibrio mimicus MB-451] Length = 1053 Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 117/385 (30%), Positives = 196/385 (50%), Gaps = 22/385 (5%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTNRAVSKLFGY 487 Q G+E E I KR E+ V + S I+E +AII+ +G+IL N+ +GY Sbjct: 141 QAGLEQE-----IAKRTKELAVSEELSRTIIEGAPSSVAIIDSQGLILLWNKTAITTYGY 195 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS---TKEEKL--LSLR 542 ++ L +P L+ P + LT L +D RQ L + + T++ L + L Sbjct: 196 TADEALGQPLLTLLKMALPPELAAALTLPLRVDQRQLLNEAFYEAETYTRDGTLVPIDLG 255 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + I +L ++ + D++ K + +L+ AK AE+ KS FLA +SHEIRTP+ A Sbjct: 256 VSIFELNGQCQAAMFLRDVTARKAAEQELNEAKAKAEEAVEVKSMFLANMSHEIRTPMNA 315 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 IIG S + P+ +Y + I S L+L I+ND+LD SKIE+GK+++ Sbjct: 316 IIGMSHLALKTEL----TPKQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIEHIEF 371 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPS 721 SL+E + + A +K + + S IP +++ D + Q+ +N+++NA+ FT Sbjct: 372 SLEEVLHNVSMVTGQKAFDKGLELLFSLPREIPHKLIGDPLRIGQVVINLVNNAVKFTEQ 431 Query: 722 GGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 G+I +S + +++ V DTG+GMT + + F Q S + GTGLG Sbjct: 432 -GEISVSVQVGERQPGRIKLLFNVSDTGIGMTEKQTRNLFQAFTQADGSTTRKYGGTGLG 490 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGT 802 L +++ +V+ G+ + S P G+ Sbjct: 491 LSISRRLVELMEGEISVTSKPDAGS 515 >gi|119487927|ref|ZP_01621424.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119455503|gb|EAW36641.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1524 Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 121/376 (32%), Positives = 200/376 (53%), Gaps = 27/376 (7%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 QL +I EA S+GIAI + G L N+A +LFGY + L L +N S+ ++ Sbjct: 1007 QLTAI-EAASEGIAITSPMGDYLYLNKAHLELFGYTEANEL-------LNRNWKSL--YH 1056 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----------HDIS 562 E +D R+ + K+ + L++R F +SLT+ DI+ Sbjct: 1057 PEEGDRID-REVIAKLMEKGYSRGEALAIRK--DGSTFLEEFSLTLTNSGEFVCVCRDIT 1113 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E K+ + +L E+ + K +F+A +SHE+RTPL +I+G SEV++ + +G L N Sbjct: 1114 ERKRAEVELRRTNAQLERATRLKDEFMANMSHELRTPLYSILGLSEVLQQEVYGVL-NAE 1172 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + + I++SG +L+++N++LD+SKIESGKM L V+L + +++ V+ A++K Sbjct: 1173 QLRSLSTIEQSGQHLLELINEILDLSKIESGKMELQLSAVNLTQLCQSSLNFVKPQADQK 1232 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST-THTSNEEVILR 740 I ++ A +P I+ D ++Q+ +N+LSNA+ FTP G I++ T N V L Sbjct: 1233 NIQLQF-IATPVPVIINIDELRIRQVLINLLSNAVKFTPEGNHILLKIETEPQNNCVHLS 1291 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+G+ + + +PF QI +S R GTGLGL L + + + G + S + Sbjct: 1292 VTDTGIGIAPEDQVRLFEPFVQIDSSLSRRYSGTGLGLALVRQITQMHAGTVSLDSEVGR 1351 Query: 801 GTLIEIIFPLYDTSHP 816 G+ + P T P Sbjct: 1352 GSTFIVTLPWNSTVVP 1367 >gi|170740045|ref|YP_001768700.1| multi-sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] gi|168194319|gb|ACA16266.1| multi-sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] Length = 606 Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 97/264 (36%), Positives = 151/264 (57%), Gaps = 3/264 (1%) Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 P S D+SE ++ ++ A+ AE+ + KS FLA VSHE+RTPL AIIGFSE Sbjct: 313 PHHSAVVAVTRDVSEQRRHAEEMEQARAEAERADAVKSRFLAVVSHELRTPLNAIIGFSE 372 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++ + L R EYA I SG +L++VN LLD++KI+SG + EP L V Sbjct: 373 MLSAEANLALPPERQREYAAIIHGSGRHLLEVVNALLDLTKIQSGSFDFAPEPFDLRALV 432 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 + L+QL A++ I + ++P + AD R+ +Q+ +N+LSNA+ FTP GG+I ++ Sbjct: 433 NGCCDLMQLRADQGGIELMRDVPRDLPELTADPRACRQMLINLLSNAVKFTPRGGRITVA 492 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG--EGTGLGLPLAKAMVD 786 + + + V DTGVG+ +L + PF Q +S EGTGLGL + + +V Sbjct: 493 -VRAIYDRIEMSVTDTGVGIAEADLPRLGDPFFQAGDSAAYARMHEGTGLGLSVVRGLVG 551 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPL 810 + G+ + S+ A+GT + ++ PL Sbjct: 552 LHDGELLLESSVARGTRVVVVLPL 575 >gi|94263975|ref|ZP_01287777.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455647|gb|EAT05829.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 1048 Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 143/521 (27%), Positives = 238/521 (45%), Gaps = 61/521 (11%) Query: 325 TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK-LSDNNAIK 382 VD+ P + GN+ YAN +FL T Y+ ++ L P+ L D + ++ Sbjct: 167 AVDQSPSGIIITDLDGNIEYANQAFLACTGYQKME---------VLGRNPRFLKDESTLE 217 Query: 383 PVMLYRSDRTCIAASARLHTIQW----------NRENSLAMTFIPFEKANQFPENMPQNG 432 Y+ IAA HT W RE A T P ++A+ N Sbjct: 218 S--HYQEMWNTIAAG---HT--WKGEFYNRRKDGREYIEANTVAPIKQADGSITNY--LA 268 Query: 433 IEPEDVDTRINKRKMEIEVMQ---------------LCSILEATSDGIAIINREGIILST 477 I+ D +K KME+E+++ + +I+E +DGI I+++G ILS Sbjct: 269 IK----DDVTDKMKMEVELLRHRDHLAELVEEQTVSIKAIVETAADGIITIDQQGKILSF 324 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL----EKITLGST 533 N A +FGYP +++ + + S + YL L + + E + L Sbjct: 325 NPAAEVIFGYPAGEMIGSKINRLMPEPHRSQHDQYLRNYLQSGTAKVINTQVEVMALRRD 384 Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 LSL + ++ ++ DIS K+ + L A++ AE + KSDFLA +S Sbjct: 385 GSTFPLSLAVSAMEIGGEKRFTAIFRDISSQKEAEKALVTARQAAEAANRTKSDFLANMS 444 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HEIRTP+ A+IG S + P+ +Y + S + +L I+ND+LD+SKIESG Sbjct: 445 HEIRTPMNAVIGLSHICLQTEL----TPKQRDYLEKVHNSAHSLLGILNDILDLSKIESG 500 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNIL 712 ++ + P +L+E + +LV K + + +P + D + Q+ N++ Sbjct: 501 RLEVEEIPFNLEEVLDRLHTLVDARIAAKPLQFKLDLPPEVPVNLRGDPLRLGQVLTNLV 560 Query: 713 SNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 NA+ FT G + ++ + +E+ L VRD G+GMT + + +PF Q S Sbjct: 561 GNAVKFTEEGEIAVTVAVVAEAEQEITLSFTVRDNGIGMTQEQCARLFQPFSQADTSTTR 620 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + GTGLGL +++ +V+ G+ + S KG+ PL Sbjct: 621 KYGGTGLGLSISRQLVELMGGEIRVESEAGKGSSFIFTLPL 661 >gi|298676132|ref|YP_003727881.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298289120|gb|ADI75085.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 995 Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 95/252 (37%), Positives = 147/252 (58%), Gaps = 3/252 (1%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DI+ KQ + KL +AK AE + KS+ LA VSHE+RTPLT+IIGFS+VI ++ G Sbjct: 738 VRDITVRKQAEEKLINAKLEAEAANQAKSELLANVSHELRTPLTSIIGFSDVILKRKVGD 797 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 L N Y + I +SG +LD++ND+LD++KIESGK+ LH E +S+ +++ S + Sbjct: 798 L-NDNQTRYLDKIHKSGQHLLDLINDILDLAKIESGKLELHREKISIPALLNDLESKLYP 856 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 +A++K + + + NI I AD ++QI N++ NAI FT G + T N+ Sbjct: 857 FASKKGLSLDSEIDPNIEYIYADEIKLRQILYNLIYNAIKFTNKGS--VTVTVRQKNDAY 914 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V DTG+G+ + ++ + F Q+ R GTGLGL L K +V+ + G+ ++ S Sbjct: 915 QFSVIDTGIGIPEDKQDEIFESFRQLDTGASRRYAGTGLGLALVKRLVEIHGGQIWVESE 974 Query: 798 PAKGTLIEIIFP 809 +KGT P Sbjct: 975 ESKGTTFTFTIP 986 >gi|21229307|ref|NP_635229.1| two component system histidine kinase [Methanosarcina mazei Go1] gi|20907888|gb|AAM32901.1| Two component system histidine kinase [Methanosarcina mazei Go1] Length = 892 Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 99/251 (39%), Positives = 145/251 (57%), Gaps = 3/251 (1%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+SE K+ + +L AK AE + KS+FL +SHE+RTPLTAIIGFS+V+ G Sbjct: 321 DLSERKKTEEELLQAKLAAESANRAKSEFLTNMSHELRTPLTAIIGFSDVMLGGISGEFS 380 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 ++ N I SG +L ++N++LD+SKIE+GKM L FE S+ E ++ ++ A Sbjct: 381 EQNK-KFLNNIANSGKHLLTLINNILDLSKIEAGKMELEFEMFSVSEVFNDTRAVTSALA 439 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 +K I ++ + + I + AD KQI N++SNAI FTP G +I+S T + V + Sbjct: 440 LKKDISMKYNVDSEI-LVYADRVRFKQIIYNLVSNAIKFTPDRGSVIVSALKTED-SVRI 497 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G++ + +PF QI S EGTGLGL L K V+ + G+ + S P Sbjct: 498 SVSDTGIGISEENQKLLFQPFRQIDASINRHYEGTGLGLALVKKFVNLHGGRVWAESEPG 557 Query: 800 KGTLIEIIFPL 810 KG+ E PL Sbjct: 558 KGSTFEFELPL 568 >gi|258593750|emb|CBE70091.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 627 Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 95/255 (37%), Positives = 143/255 (56%), Gaps = 19/255 (7%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E S HKS+FL +SHE+RTPL AI+GFSE+++N G L N + + +I G +L Sbjct: 370 EAASRHKSEFLTHMSHELRTPLNAILGFSELLRNPAIGSL-NEQQARHLTHIQAGGKHLL 428 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 I NDLLD++K+E+GK+ LH EP +D+A+ A++ ++ A++K + + + + Sbjct: 429 VITNDLLDLAKVEAGKLQLHPEPFDIDKAILAALADIRPLADQKHLTLTLHADTALVPLT 488 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----------------VILRVR 742 AD KQI N+LSNAI FTP GG+I + T H + E V + V Sbjct: 489 ADPLRFKQIIYNLLSNAIKFTPEGGRITV-TAHIGSSEGARLNPIPDTLYPGEFVEIAVA 547 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK-G 801 DTG+G+T L + +PF Q+ + + GTGLGL L K +V+ + G+ + S A G Sbjct: 548 DTGIGITAENLSRLFQPFTQLDPTLAKQYHGTGLGLALTKQLVELHGGRIWAASDGAGCG 607 Query: 802 TLIEIIFPLYDTSHP 816 + I FPL + P Sbjct: 608 SCFTICFPLTPPARP 622 >gi|309790134|ref|ZP_07684707.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308227859|gb|EFO81514.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 1034 Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 111/367 (30%), Positives = 197/367 (53%), Gaps = 29/367 (7%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV--MN 510 +L +IL+ DG I++ + L N A + GY ++L T+F + + ++ Sbjct: 492 RLRTILQTAQDGFMILDLQLRFLEVNDAYCGMSGYTRAELL-NGMTIFNVEAFEAYEQIH 550 Query: 511 HYLTEILS--LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568 + I++ +DL +T + GST ++ S+ I C+ DI++ K+ + Sbjct: 551 AHAHRIMTQGIDLFETRHRRKDGSTFHVEI-SVHYIDSDGGVMVCFC---RDITDRKRRE 606 Query: 569 NKLSH-----AKKIAEKESS-------------HKSDFLARVSHEIRTPLTAIIGFSEVI 610 ++ H +++AE+ + K +FLA +SHE+RTPL I+ FSE++ Sbjct: 607 AEIRHLNSELEQRVAERTADLSRTNAELNRALRTKDEFLATMSHELRTPLNGILSFSELL 666 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + + GP+ N + YI+ SG +L ++ND+LD+SK+E+G+M +H E S+ E Sbjct: 667 QEEISGPI-NEQQRRSLQYIESSGRHLLALINDILDLSKVEAGRMEIHSEIYSVVEICEA 725 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 ++ V+ AN K + + S ++N+ I D + +KQ+ +N+LSNA+ FTP GGQ+++ T Sbjct: 726 SLLFVKELANRKGLQVGFSCSDNLAIIEVDAKRLKQMLINLLSNAVKFTPDGGQVLLEVT 785 Query: 731 HTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + VI V DTG+G+ ++E+ +PF Q+ +S + EGTGLGL L + + D Sbjct: 786 TDATAGVIRFVVSDTGIGIKAEDMERLFRPFTQLDSSLSRQHEGTGLGLALVRRLADLMG 845 Query: 790 GKFYIFS 796 G + S Sbjct: 846 GSIGVES 852 >gi|307153867|ref|YP_003889251.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306984095|gb|ADN15976.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1486 Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 86/251 (34%), Positives = 149/251 (59%), Gaps = 9/251 (3%) Query: 565 KQEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 KQ+KN +L A ++ K +FLA +SHE+RTPL AI+G +E ++++ FG + N R Sbjct: 1099 KQQKNAELDRATRL-------KDEFLANMSHELRTPLNAILGMTEGLQDEIFGQI-NERQ 1150 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + I+++GN +L+++ND+LD+SKIESG++ LH + +++ V+ A +KR Sbjct: 1151 RKSLKIIEQAGNHLLELINDILDVSKIESGQLELHCTSTEIIPLCQSSLAFVKQQAVKKR 1210 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 I + + ++NI + D R ++Q+ +N+L+NA+ FTP GG++ + V V+D Sbjct: 1211 IQLDFNISSNILMLTLDERRIRQVIINLLNNAVKFTPEGGKVGLEVVQIGENTVRFAVKD 1270 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ + K +PF QI ++ + GTGLGL L K +VD + G+ + S G+ Sbjct: 1271 TGIGIAAENIPKLFQPFMQIDSALNRQYTGTGLGLALVKRLVDLHGGEVSVTSELGVGSC 1330 Query: 804 IEIIFPLYDTS 814 + PL ++ Sbjct: 1331 FSVDLPLMESC 1341 >gi|225571072|ref|ZP_03780089.1| hypothetical protein CLOHYLEM_07171 [Clostridium hylemonae DSM 15053] gi|225160153|gb|EEG72772.1| hypothetical protein CLOHYLEM_07171 [Clostridium hylemonae DSM 15053] Length = 1117 Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 108/311 (34%), Positives = 161/311 (51%), Gaps = 31/311 (9%) Query: 527 KITLGSTKEEKLLSLR--------------IIIKKLPFSS--CYSLTMHDISEWK----Q 566 K LGSTK+E L +R II P+S L + E + Q Sbjct: 526 KEILGSTKQEVFLEMRQKLSDGNYHWTSTQIIYVDNPYSEDKLAILISRRVDEQRYEEEQ 585 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG-NPRYIE 625 ++ L A A + KS FL+ +SH+IRTP+ AI+G +EV K LG R E Sbjct: 586 QRQALQTALDNARAANEAKSKFLSNMSHDIRTPMNAIVGMTEVAKAH----LGEQDRVRE 641 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + I RSG+ +L ++ND+LD+S+IESGKM+L EP +L E V+EA LV+ A K+I Sbjct: 642 CLDKISRSGSHLLGLINDVLDMSRIESGKMSLSAEPFNLAEMVTEAAELVRPQAENKQIH 701 Query: 686 IRTS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-----EEVIL 739 I + +++ D ++Q+ +NILSNA+ +TP GG + + + + I Sbjct: 702 IDIHLYGLKNEKVIGDELRLRQVGVNILSNAVKYTPEGGSVEVEVRQAKSSRKGYQSFIF 761 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 R DTG+GMT LEK PF + +S + GTGLG+ + K ++D G + S P Sbjct: 762 RCADTGIGMTQEFLEKLFLPFERAKDSTDSKVVGTGLGMAITKNIIDLMNGDIQVESEPG 821 Query: 800 KGTLIEIIFPL 810 G++ + PL Sbjct: 822 AGSVFTVTVPL 832 >gi|254780903|ref|YP_003065316.1| two-component sensor histidine kinase protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040580|gb|ACT57376.1| two-component sensor histidine kinase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 766 Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 103/267 (38%), Positives = 158/267 (59%), Gaps = 19/267 (7%) Query: 557 TMHDISEWKQ----EKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 T++D+S +Q +K +LS A K+ AE + KS+FLA++SHE+RTPL AI+G Sbjct: 504 TINDLSTSRQILERQKTELSIANAKYQVEKERAETANKTKSEFLAKMSHELRTPLNAILG 563 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSEVIK + FG LG+ +Y EYA I SG +L+++N++L++SKIE+ K+++ + L Sbjct: 564 FSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMINNILEMSKIETEKISIDKQNADLI 623 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRIL---ADLRSVKQIALNILSNAIHFTPSG 722 ++E I L+ A K I I IP L AD R +K+I ILSN+I FT + Sbjct: 624 PIINEGIRLIGSSAQSKNIKIE----KKIPSELFFNADKRIIKKILFPILSNSIKFTNNN 679 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 G+++I T+ + VI+ + DTG+G+ LEK +PF + N G GLGL ++ Sbjct: 680 GKMMIRTSKIG-QCVIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISD 738 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 A+ + + G+ I S KGT++ I P Sbjct: 739 ALTNLHGGRLKIISQEGKGTIVTICMP 765 >gi|262164518|ref|ZP_06032256.1| hypothetical protein VMA_000961 [Vibrio mimicus VM223] gi|262026898|gb|EEY45565.1| hypothetical protein VMA_000961 [Vibrio mimicus VM223] Length = 1053 Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 117/385 (30%), Positives = 195/385 (50%), Gaps = 22/385 (5%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTNRAVSKLFGY 487 Q G+E E I KR E+ V + S I+E +AII+ +G+IL N+ +GY Sbjct: 141 QAGLEEE-----IAKRTKELAVSEELSRTIIEGAPSSVAIIDSQGLILLWNKTAITTYGY 195 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS---TKEEKL--LSLR 542 ++ L +P L+ P + LT L +D RQ L + + T++ L + L Sbjct: 196 TADEALGQPLLTLLKMALPPELAAALTLPLRVDQRQLLNEAFYEAETYTRDGTLVPIDLG 255 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + I +L ++ + D++ K + +L+ AK AE KS FLA +SHEIRTP+ A Sbjct: 256 VSIFELNGQCQAAMFLRDVTARKAAEQELNEAKAKAEDAVEVKSMFLANMSHEIRTPMNA 315 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 IIG S + P+ +Y + I S L+L I+ND+LD SKIE+GK+++ Sbjct: 316 IIGMSHLALKTEL----TPKQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIEHIEF 371 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPS 721 SL+E + + A +K + + S IP +++ D + Q+ +N+++NA+ FT Sbjct: 372 SLEEVLHNVSMVTGQKAFDKGLELLFSLPREIPHKLIGDPLRIGQVVINLVNNAVKFTEQ 431 Query: 722 GGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 G+I +S + +++ V DTG+GMT + + F Q S + GTGLG Sbjct: 432 -GEISVSVQVGERQPGRIKLLFHVSDTGIGMTEKQTRNLFQAFTQADGSTTRKYGGTGLG 490 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGT 802 L +++ +V+ G+ + S P G+ Sbjct: 491 LSISRRLVELMEGEISVTSQPDMGS 515 >gi|39934927|ref|NP_947203.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] gi|39648777|emb|CAE27299.1| sensor histidine kinase with a PAS domain [Rhodopseudomonas palustris CGA009] Length = 610 Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 101/254 (39%), Positives = 147/254 (57%), Gaps = 1/254 (0%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M DI+E K + L A+ A++ + KS FLA +SHE+RTPL AIIGFS++I Sbjct: 328 VMRDITERKIHEQALDQARAEADRADAAKSRFLATMSHELRTPLNAIIGFSDMILQDDVL 387 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 LG R EYA I+ SG +L +VN +LD+SK+ESG + EP + A+ +L+ Sbjct: 388 MLGPERRKEYAQLINDSGQHLLSVVNGILDMSKMESGSFEIVPEPFAPRPALLNCCNLLA 447 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 L A + I + T N+P ++ D R+ KQI LN++SNAI FT GG + +S Sbjct: 448 LKARDSGIDLVTRAPENLPEVVGDPRAFKQILLNLVSNAIKFTERGGTVTVSAA-VEGTR 506 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 ++LRV DTGVG+ +L++ PF Q + Q R EGTGLGL + K++V + G+ + S Sbjct: 507 LVLRVTDTGVGIAEEDLKRLGDPFFQAGKTYQRRHEGTGLGLSIVKSLVRMHGGEIEVQS 566 Query: 797 TPAKGTLIEIIFPL 810 GT + + PL Sbjct: 567 QIDCGTTVTVSLPL 580 >gi|224370417|ref|YP_002604581.1| multidomain fusion protein (N:DNA-binding domain/C:signal transduction histidine kinase) [Desulfobacterium autotrophicum HRM2] gi|223693134|gb|ACN16417.1| multidomain fusion protein (N:DNA-binding domain/C:signal transduction histidine kinase) [Desulfobacterium autotrophicum HRM2] Length = 772 Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 99/287 (34%), Positives = 155/287 (54%), Gaps = 27/287 (9%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y D++E K+ +L A++ AE + KSDFL +SHE+RTPL AIIGFSEV++++ Sbjct: 336 YVAVKEDVTETKRILQELEKAREAAEVSNIAKSDFLTSMSHELRTPLNAIIGFSEVLQDR 395 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 FGPL + + EY + I +G +L ++ND+LD+SK+E+GKM L + V + +A+ + Sbjct: 396 FFGPLTD-KQSEYLDDILGAGQHLLSLINDILDLSKVEAGKMMLEIKSVKVSDAIETGLV 454 Query: 674 LVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIII---- 727 +++ I ++T F + + AD R +KQI NILSNA+ FTP GG I I Sbjct: 455 MLKEKIACHGITVKTDFKETCHKLTLAADERKLKQIIFNILSNAVKFTPDGGTITIEMMV 514 Query: 728 ------------------STTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 +T + +I+ + DTG+G+++ +L + F Q + Sbjct: 515 LDPDPIPGTDILPDWMQKATGQVGKQPHLIISIADTGIGISSEDLPHIFEEFYQTLAGIR 574 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTS 814 GTGLGLPL+K M + + G S P KG+ ++ PL S Sbjct: 575 ASTPGTGLGLPLSKRMAELHGGTIMAHSEGPDKGSRFTLLMPLMTVS 621 >gi|192290456|ref|YP_001991061.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192284205|gb|ACF00586.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 610 Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 101/254 (39%), Positives = 147/254 (57%), Gaps = 1/254 (0%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M DI+E K + L A+ A++ + KS FLA +SHE+RTPL AIIGFS++I Sbjct: 328 VMRDITERKIHEQALDQARAEADRADAAKSRFLATMSHELRTPLNAIIGFSDMILQDDVL 387 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 LG R EYA I+ SG +L +VN +LD+SK+ESG + EP + A+ +L+ Sbjct: 388 MLGPERRKEYAQLINDSGQHLLSVVNGILDMSKMESGSFEIVPEPFAPRPALLNCCNLLA 447 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 L A + I + T N+P ++ D R+ KQI LN++SNAI FT GG + +S Sbjct: 448 LKARDSGIDLVTRAPENLPEVVGDPRAFKQILLNLVSNAIKFTERGGTVTVSAA-VEGTR 506 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 ++LRV DTGVG+ +L++ PF Q + Q R EGTGLGL + K++V + G+ + S Sbjct: 507 LVLRVTDTGVGIAEEDLKRLGDPFFQAGKTYQRRHEGTGLGLSIVKSLVRMHGGEIEVQS 566 Query: 797 TPAKGTLIEIIFPL 810 GT + + PL Sbjct: 567 QIDCGTTVTVSLPL 580 >gi|121535347|ref|ZP_01667159.1| PAS/PAC sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] gi|121306039|gb|EAX46969.1| PAS/PAC sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] Length = 664 Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 91/253 (35%), Positives = 150/253 (59%), Gaps = 4/253 (1%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E KQ + KL+ A AE + K FLA +SHE+RTPL AI+GFSEV+ +Q FGPL Sbjct: 400 DITEHKQLEVKLTEALAAAEAANQAKDQFLAAMSHELRTPLNAIMGFSEVLLDQHFGPLN 459 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + + Y N I S +L+I+ND+LD++K+ +GK N + E V + + + + + +++ A Sbjct: 460 DKQQV-YVNDILDSARHLLEIINDVLDLAKLNAGKTNFYPETVDIAKLLRQTLGIIKDRA 518 Query: 680 NEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K I + + + P++ D+R KQI N+LSNA+ FTP GG I + + E + Sbjct: 519 AAKNIAVELAVDAGVPPQVQVDVRRFKQIMYNLLSNAVKFTPDGGAIKVE-CRDAGEWLE 577 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI-FST 797 + V DTG+G+ E +PF Q+ + + GTGLGL + + +V+ + G+ ++ S Sbjct: 578 ISVEDTGIGIAATHAEHIFEPFYQVSGNLTAKTPGTGLGLAITRQLVELHGGRIWLERSE 637 Query: 798 PAKGTLIEIIFPL 810 P +G+ + P+ Sbjct: 638 PGQGSRFTFVLPV 650 >gi|75909154|ref|YP_323450.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75702879|gb|ABA22555.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] Length = 573 Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 113/368 (30%), Positives = 194/368 (52%), Gaps = 15/368 (4%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH- 511 Q +I E +S GI +++ + I+ N A+ ++ GY E++ K FT ++ Q V + Sbjct: 206 QFRAIFELSSIGIGLVDMKAQIVDANPALCQMLGYQREELCGKRFTDYISQQRGDVERYK 265 Query: 512 -YLTEILSLDLRQTLEKITLGSTK-----EEKLLSLRIIIKKLPFS----SCYSLTMHDI 561 +TEI +D +Q EK L + + +L+ R+ + +P S + + DI Sbjct: 266 QLMTEI-CIDAQQHHEKPHLEIERAFLHRDGRLVWTRLSVSVIPGSYGEPEYFLAIIDDI 324 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 ++ KQ + KL ++ AE S KS+FLA +SHE+RTPL AI+G S++++ + G L N Sbjct: 325 TDRKQTEMKLRASQAAAEAGSRAKSEFLATMSHELRTPLNAIMGLSQLLQQEIVGSL-NE 383 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + EY + I SG +L ++ND+LD+SK+E+GK L P+ + + ++ + V+ A Sbjct: 384 KQQEYISCIYSSGEHLLALINDILDLSKVEAGKEELFLIPLLVIDVCNDVLLTVRDRAIS 443 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 K + + +AD R +KQ+ LN+L+NAI FT G + T E + + Sbjct: 444 KGLKLTQEIDPEASICIADDRRIKQMLLNLLTNAIKFTSVGE--VSLTVKRVPEGINFII 501 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ + + +PF Q+ + + EGTGLGL L + + + G + ST G Sbjct: 502 SDTGIGIDSNQFPLLFEPFKQLDSRLNRQYEGTGLGLALTRKLARLHGGDVTVTSTVGVG 561 Query: 802 TLIEIIFP 809 + + P Sbjct: 562 SQFTLFLP 569 >gi|325108211|ref|YP_004269279.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324968479|gb|ADY59257.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 797 Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 98/280 (35%), Positives = 160/280 (57%), Gaps = 25/280 (8%) Query: 561 ISEWKQEKN---------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 IS+ + EKN +L AK+ AE+ + KS+FLA +SHEIRTP+TAI+G+++V+ Sbjct: 361 ISKEQLEKNSRRLQDVVEQLEVAKERAEQSARSKSEFLANMSHEIRTPMTAILGYTDVLL 420 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 ++ NP + + I R+G +L I+ND+LDISKIE+GKM + P S + +++ Sbjct: 421 HE---VADNPHFQDSLTTIKRNGEHLLQIINDILDISKIEAGKMEVEIIPTSPTQLIADV 477 Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 +L+ + A EK + + FA+ +P I D ++QI LN++SNAI FT GG I + Sbjct: 478 YTLMAVRAQEKDVELSYEFASRLPHTIQTDPTRLRQILLNLVSNAIKFTDKGGVRIRAAI 537 Query: 731 H-----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 ++ + + V+D+G+GM++ + K +PF Q S R GTGLGL +++ + Sbjct: 538 EQGLPGQTDPRLAIYVQDSGIGMSDEQKAKLFQPFTQADTSMSRRFGGTGLGLTISQRLA 597 Query: 786 DANMGKFYIFSTPAKGTLI------EIIFPLYDTSHPHDC 819 GK + S P KG+ +++ P+ D HP +C Sbjct: 598 QKLGGKISVESMPGKGSTFCVSIATQVVCPI-DGGHPCNC 636 >gi|163797319|ref|ZP_02191272.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159177410|gb|EDP61966.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 537 Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 90/228 (39%), Positives = 136/228 (59%), Gaps = 6/228 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA VSHE+RTPL +I+GFSE++++Q R EYA I SG+ +L ++ND+ Sbjct: 301 KSEFLALVSHELRTPLNSILGFSELVRDQAVRGADPERMSEYAADIHASGSHLLTLINDI 360 Query: 645 LDISKIESGKMNLHFE---PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 LD+SKIE+G+M +H E P ++ AV E L++ A K + I +I + AD Sbjct: 361 LDLSKIEAGQMEIHSEWVDPAAITRAVVE---LMREQATRKNLTIECRLDPSIGPLRADP 417 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 R +Q+ +N+LSNA+ FT G + I T + + V DTG+GM + ++ +A++PFG Sbjct: 418 RRFRQMLMNLLSNAVKFTDPPGTVTIEGRVTPEGGLTIAVVDTGIGMRSQDVARALEPFG 477 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 QI + +GTGLGLPL M + G+ + S+P GT + FP Sbjct: 478 QIDSPITRSQQGTGLGLPLVSQMARLHGGRLSMDSSPGVGTRATLWFP 525 >gi|90419109|ref|ZP_01227020.1| signal transduction histidine kinase [Aurantimonas manganoxydans SI85-9A1] gi|90337189|gb|EAS50894.1| signal transduction histidine kinase [Aurantimonas manganoxydans SI85-9A1] Length = 653 Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 93/243 (38%), Positives = 134/243 (55%), Gaps = 2/243 (0%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 E L A A + S+ KS FLA VSHE+RTPL AIIGFS+++ + FG + R EY Sbjct: 373 ESADLQTALDAANQSSAAKSQFLAAVSHELRTPLNAIIGFSDILDQEFFGGFESDRQKEY 432 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I +SG +L +VN LLD+SKIE+G+ L E L EA+ A+ +V+ A K + + Sbjct: 433 VGLIRQSGQHLLSVVNSLLDVSKIEAGRYELVPEAFGLGEAMDLAVDVVREEARRKDLRL 492 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 I AD R+ QI LN+LSNA+ FT G ++ + V V DTG+ Sbjct: 493 DVRPGCRDEEITADRRACHQILLNLLSNALKFTEVG--VVTLESRRVGAMVEFSVSDTGI 550 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ ++E+ +PF Q+ + R +GTGLGL L K + + + G I S P GT++ + Sbjct: 551 GIAESDIERLGRPFVQVSSGTTRRYQGTGLGLSLVKGLAELHGGDMTIRSQPGVGTMVTV 610 Query: 807 IFP 809 P Sbjct: 611 RLP 613 >gi|114706954|ref|ZP_01439853.1| putative sensor histidine kinase protein [Fulvimarina pelagi HTCC2506] gi|114537504|gb|EAU40629.1| putative sensor histidine kinase protein [Fulvimarina pelagi HTCC2506] Length = 490 Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 92/238 (38%), Positives = 137/238 (57%), Gaps = 3/238 (1%) Query: 574 AKKIAEKESSHKSD-FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A ++AE E S+ LA VSHE+RTPL AIIGFS +++N+ FG L + + EY I Sbjct: 219 ANQLAEPEPGRLSEAMLATVSHELRTPLNAIIGFSGILENELFGALNSDKQREYVGLIQS 278 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG +L +VND+LD+SKIE+G LH E LDE V EA ++V+ A++K + I + Sbjct: 279 SGRHLLSVVNDILDVSKIEAGAYQLHCEHFLLDEVVEEASAMVRCQADQKGVSIEIACPP 338 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 I D R++ + +N+L+NA+ FT +G + + + ++ L V DTG+G+ + Sbjct: 339 GGTTIHGDRRALNHMLVNLLANAVKFTDAG--TVTLSWERAGRDLRLNVADTGIGIPADQ 396 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + K KPF Q R EGTGLGL + M + + G I ST +GT + + PL Sbjct: 397 IGKLGKPFVQASCGMSRRYEGTGLGLAYVRGMCELHGGAMTIESTEGEGTRVMLDMPL 454 >gi|91774312|ref|YP_567004.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91713327|gb|ABE53254.1| luxQ-like PAS sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 371 Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 113/362 (31%), Positives = 192/362 (53%), Gaps = 9/362 (2%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++ + +DGI II +G L N+ GY ++L+ TV TP E Sbjct: 7 TVFNSVNDGILIITLDGRFLEVNQITCDDLGYQRHELLQ--MTVM--DITPPEFREMARE 62 Query: 516 ILSLDLRQTLEKI-TLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLS 572 + ++Q + T+ K+ L+ + + I + ++ ++ +I+E K+ + + Sbjct: 63 NVIGKMKQGGGIVETISICKDGSLVPIELNIHPIEYNGAPAILAVARNITERKKAEEAML 122 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 AK AE + KS+FLA +SHE+RTPL +IIGFS+VI N+ G L N ++ + + Sbjct: 123 SAKLAAEDANKSKSEFLANMSHELRTPLNSIIGFSDVISNESHGSL-NELQKKFISNVIS 181 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 +G +L+I+ND+L S+IE+GKM LH + E+++E L+ A+EK I ++ + Sbjct: 182 NGKHLLNIINDILSASQIETGKMELHISEFHVSESINEIEVLMIPIASEKNIELKFNIDI 241 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 +P I AD +QI N+++NAI FT G ++ I S++ V + V+D+G+G++ + Sbjct: 242 GMPNIRADATKFEQIIYNLVNNAIKFTNEGEKVEIR-GEISDDFVHISVKDSGIGISPDD 300 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 K PF Q+ +S GTGLGL + K V+ + GK ++ S KG+ P Y Sbjct: 301 QNKLFTPFFQVDSSNTREYGGTGLGLAIVKKYVEMHGGKVWVESEVGKGSTFGFRMPTYP 360 Query: 813 TS 814 S Sbjct: 361 ES 362 >gi|163849986|ref|YP_001638029.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163661591|gb|ABY28958.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 786 Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 86/236 (36%), Positives = 144/236 (61%), Gaps = 2/236 (0%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K AE + KS+FLA +SHE+RTPL AI+GF+E+++++ +G LG+PRY +Y I +SG Sbjct: 515 KARAEIANQAKSEFLANMSHELRTPLNAIMGFAELMESEVYGSLGSPRYADYCRDIQQSG 574 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L +++D+L +S+IE+ ++ L + L A++ A++LV A K + I A + Sbjct: 575 TYLLSVIDDILHMSRIEAKRVKLVRRDIDLGTALTSALTLVAKEAASKSVSIDLELAGTL 634 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 +LAD R+++QI LNI+ NA+ FTP G+I + + N V L + DTG+G+ + Sbjct: 635 -HVLADERALQQILLNIIQNAVKFTPERGRIALR-GRSCNGFVHLFIGDTGIGIPKTAIS 692 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 K +PF Q+ + +G+GLGL +A++ + + G I S GTL+ + P+ Sbjct: 693 KLGRPFEQVETNLTRSYKGSGLGLAIARSTAELHGGSLRIRSEEGIGTLVLVRLPM 748 >gi|91203275|emb|CAJ72914.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 818 Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 98/277 (35%), Positives = 155/277 (55%), Gaps = 18/277 (6%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 S Y++ I+E + K A K A + KS+FLA +SHE+RTPL AIIGF+EV Sbjct: 272 LRSSYAMLEQRITEKTEHLQKAVSALKRANR---MKSEFLANMSHELRTPLNAIIGFAEV 328 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 +K++ G L N ++ I SG +L ++ND+LD+SKIE+GKM L +E + +A+ Sbjct: 329 LKDKLCGEL-NAEQEDFVKDIHSSGRHLLQMINDILDLSKIEAGKMELQYESFLVSDAIE 387 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 + ++++ A +K++ ++T ++ I AD KQI N+LSN+I FTP G I Sbjct: 388 DVYTILKGLAKKKQLQLKTVIQEDVKDIEADRVKFKQILYNLLSNSIKFTPQNGTI---- 443 Query: 730 THTSNEEVI-----LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 T+N ++ + V D+G+G+ + EK K F Q +S + EGTGLGL L + + Sbjct: 444 --TTNAAIVDGKMQVSVSDSGIGIKPEDREKVFKEFWQADSSFSRKYEGTGLGLALTRRI 501 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTS---HPHD 818 V+ + GK ++ S KG+ P+ + HP D Sbjct: 502 VEMHGGKIWLKSEYGKGSTFYFTIPVTKSQRILHPED 538 >gi|119484750|ref|ZP_01619232.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119457568|gb|EAW38692.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 727 Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 92/285 (32%), Positives = 155/285 (54%), Gaps = 21/285 (7%) Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + + +++C T+ E Q +++L + E+ S KS+FLA +SHE+RTPL +I+G Sbjct: 288 RDMLYAACR--TLGTAIERAQAQDRLRQINEDLERASQMKSEFLASMSHELRTPLNSILG 345 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FS+++K Q G L N R I + I++SG +L ++ND+LD+SKIE+GK L+ + V + Sbjct: 346 FSDLLKRQISGEL-NHRQINHVKLIEKSGQHLLQLINDILDLSKIEAGKTELNIQAVEVH 404 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 +E + ++Q A++KR+ + + ++ D R V+QI +N+LSNA+ FTP G I Sbjct: 405 RLCNECLKMIQPRADKKRLALSLELDYRLNQVALDERRVRQIIINLLSNAVKFTPEAGII 464 Query: 726 IIST------------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 +S + S + L V+D+G+G+ +PF Q+ S Sbjct: 465 KLSGRLAYGSQMEGDYRPDCSPVNASTPYLCLEVQDSGIGIPEDRWHLLFRPFQQVDASL 524 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 R EGTGLGL L K + + + G + S +G+ + PL + Sbjct: 525 TRRHEGTGLGLALTKRLAELHGGTVSLQSDVNQGSRFRVWLPLTE 569 >gi|21228620|ref|NP_634542.1| sensory transduction histidine kinase [Methanosarcina mazei Go1] gi|20907118|gb|AAM32214.1| Sensory transduction histidine kinases [Methanosarcina mazei Go1] Length = 702 Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 114/360 (31%), Positives = 195/360 (54%), Gaps = 12/360 (3%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-QNTPSVMNHYLT 514 +++ T DGI I++ EG +L+ N A+ K+ G +E + +L ++ P + + Sbjct: 330 TLVNNTLDGILILDFEGRVLAANAAIGKMLGMELEKVAGIDIMKYLAPESVPVAVEDQIN 389 Query: 515 EILSLDLRQTLEKITLGSTKEEKL----LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 + ++ K T S E L L +II + P + + + DI+ K+ + Sbjct: 390 VLNGRGGYLSVYKST--SCNGEPLWIEGLGTKIIYRGQPANI---VVIRDITARKKAEEA 444 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L +AK AE + KS+FL +SHE++TPL +IIGFS+++ GPL N + YA +I Sbjct: 445 LINAKTAAEAANRTKSEFLTNMSHELKTPLNSIIGFSDLLIEGIAGPL-NEKQSRYAGFI 503 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 +G +L+I+N +L++SK+ES L + S++E+++++IS +K I + + Sbjct: 504 SSNGKNLLNIINGILELSKVESEGDELTLQEFSVNESINKSISTALPQILKKNIKLNYNS 563 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 ++ I AD +QI ++L+NA+ FTP G I IS+ V ++V+DTG+G+ Sbjct: 564 DSDPLCIFADENKFRQIMESLLNNAVKFTPEDGLIDISSKQEGG-IVTIKVKDTGIGIPE 622 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 L+K KPF Q+ +S EGTGLGL LAK V+ + G + S KG+ ++ P+ Sbjct: 623 DSLDKIFKPFIQLESSLSRTFEGTGLGLTLAKKYVEMHGGNISVESKTGKGSSFKVELPV 682 >gi|115523889|ref|YP_780800.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] gi|115517836|gb|ABJ05820.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] Length = 615 Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 99/254 (38%), Positives = 148/254 (58%), Gaps = 1/254 (0%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M D+++ KQ++ L A+ A + + +S FLA VSHE+RTPL AIIGFSE+I ++ Sbjct: 326 VMRDVTDRKQQELALEQARAEAARADASRSRFLATVSHELRTPLNAIIGFSEMIVQEQAL 385 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + R EYA I+ SG +L +VN +LD+SK++SG + EP + A+ +L+ Sbjct: 386 MISAERRREYAQLINDSGQHLLSVVNGILDMSKMDSGNFEILPEPFAPRPALLNCCNLLA 445 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 L A + I + T +++P + D R+ KQI LN++SNAI FT GG + +S Sbjct: 446 LKARDSGIDLVTRAPDDLPEVNGDPRAFKQIVLNLVSNAIKFTERGGTVTVSAA-VEGAH 504 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + LRV DTGVG+ +LE+ PF Q + Q R EGTGLGL + K +V + G+ + S Sbjct: 505 LALRVVDTGVGIAADDLERIGDPFFQAGKTYQRRHEGTGLGLSIVKTLVALHGGELTVAS 564 Query: 797 TPAKGTLIEIIFPL 810 KGT + + PL Sbjct: 565 QLDKGTTVTAMLPL 578 >gi|150019623|ref|YP_001311877.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149906088|gb|ABR36921.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 979 Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 94/256 (36%), Positives = 156/256 (60%), Gaps = 4/256 (1%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K+ + AK+ AEK S KS+FL+ +SHE+RTPL AI+GFS++++ PL Sbjct: 577 DITEQKKMARSIITAKEEAEKASKAKSEFLSSMSHELRTPLNAILGFSQILELDPESPL- 635 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 NP + I ++G+ +L+++N++LD++KIESGK+++ E V + + EAIS+++ +A Sbjct: 636 NPSQSQSVKEISKAGSHLLELINEILDLAKIESGKLSISIESVPIKHVIEEAISIIKPFA 695 Query: 680 NEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 ++ +I +I N+ + AD +KQI LN+LSNAI + GQ+I N++ Sbjct: 696 DKHKIKIINYPIDNSDEFVSADHTRLKQILLNLLSNAIKYNKKDGQVIFYHDKV-NDKYR 754 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG+G++N +LE KPF ++ N EGTG+GL +AK + + G+ ++ S Sbjct: 755 FHVIDTGIGLSNSDLELIFKPFYRL-NRINNSIEGTGIGLAVAKQLTELMNGEIFVTSEK 813 Query: 799 AKGTLIEIIFPLYDTS 814 G+ I P ++S Sbjct: 814 GAGSHFWIELPCIESS 829 >gi|90423287|ref|YP_531657.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] gi|90105301|gb|ABD87338.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] Length = 612 Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 101/262 (38%), Positives = 153/262 (58%), Gaps = 2/262 (0%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M D+++ K+++ L A+ AE+ + +S FLA +SHE+RTPL AIIGFSE+I + Sbjct: 323 VMRDVTDRKEQEQALELARAAAERADASRSHFLATMSHELRTPLNAIIGFSEMIVQEDVL 382 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + R EYA I+ SG +L +VN +LD+SK+ESGK + EP + A+ +L+ Sbjct: 383 MISAARRKEYAQLINDSGQHLLSVVNGILDMSKMESGKFEILPEPFAPRPALLNCCNLLA 442 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 L A E + + T N+P++ D R+ KQI LN++SNAI FT GG + +S Sbjct: 443 LKARENEVDLVTRAPENLPQLTGDPRAFKQIVLNLVSNAIKFTERGGTVTVSAA-VEGAR 501 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + LRV DTGVG+ +L++ + F Q S R EGTGLGL + K++V + G+ + S Sbjct: 502 LALRVSDTGVGIGADDLKRIGEAFFQASKSYHRRHEGTGLGLSIVKSLVALHGGEMSVES 561 Query: 797 TPAKGTLIEIIFPLYDTSHPHD 818 +GT + ++ PL T P D Sbjct: 562 KLDEGTTVTVMLPLAFT-RPQD 582 >gi|218528525|ref|YP_002419341.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium chloromethanicum CM4] gi|218520828|gb|ACK81413.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium chloromethanicum CM4] Length = 786 Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 85/236 (36%), Positives = 144/236 (61%), Gaps = 2/236 (0%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K AE + KS+FLA +SHE+RTPL AI+GF+E+++++ +G LG+PRY +Y I +SG Sbjct: 515 KARAEIANQAKSEFLANMSHELRTPLNAIMGFAELMESEVYGSLGSPRYADYCRDIQQSG 574 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L +++D+L +S+IE+ ++ L + L A++ A++LV A K + I A + Sbjct: 575 TYLLSVIDDILHMSRIEAKRVKLVRRDIDLGTALTAALTLVAKEAASKSVSIDLELAGTL 634 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 +LAD R+++QI LNI+ NA+ FTP G++ + + N V L + DTG+G+ + Sbjct: 635 -HVLADERALQQILLNIIQNAVKFTPERGRVALR-GRSCNGFVHLFIGDTGIGIPKTAIS 692 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 K +PF Q+ + +G+GLGL +A++ + + G I S GTL+ + P+ Sbjct: 693 KLGRPFEQVETNLTRSYKGSGLGLAIARSTAELHGGSLRIRSEEGIGTLVLVRLPM 748 >gi|294494798|ref|YP_003541291.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292665797|gb|ADE35646.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 599 Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 95/245 (38%), Positives = 149/245 (60%), Gaps = 6/245 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI++ K +N + +K +AE+ + KS+FLA +SHE+RTPL +IIG+S+++ G L Sbjct: 346 DITDRKMAENAIIQSKVLAEQANRTKSEFLANMSHELRTPLNSIIGYSQILNQNPSGNL- 404 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + ++Y++ I SG +L+++N +LDISK+E+GKM E V+L E + + I LV+ A Sbjct: 405 DEKELKYSHNILNSGEHLLELINSILDISKVEAGKMEYEPERVNLPETIDDIIGLVKPLA 464 Query: 680 NEKRILIRTSFANN--IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 +K I IR F NN I ++ D KQI N+LSNAI FTP G++ I + T + Sbjct: 465 MKKSIDIR--FINNSAIAKVWVDRVKFKQILHNLLSNAIKFTPEKGEVKIYLS-TDDGTA 521 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V DTG+G+ ++E PF Q+ +S EGTGLGL L K V+ + G+ ++ S Sbjct: 522 QISVADTGIGIPAEKIEDIFDPFKQVNSSSSREYEGTGLGLALVKKYVEMHDGEIWVESE 581 Query: 798 PAKGT 802 G+ Sbjct: 582 VGAGS 586 >gi|182678613|ref|YP_001832759.1| multi-sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634496|gb|ACB95270.1| multi-sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 583 Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 91/252 (36%), Positives = 147/252 (58%), Gaps = 2/252 (0%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS ++ + +L A+ AE + K FLA +SHE+RTPL AIIGFSE++ + + P Sbjct: 292 DISAMRRVEQELDAARVAAETANQAKDRFLANMSHELRTPLNAIIGFSEMLADPQLCPQD 351 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + EYA I SG +L +VN +LD+SKI SG L +P+ L ++ ++++ A Sbjct: 352 PLKQREYAAIIHSSGEHLLHVVNSILDMSKIHSGTFPLQPQPIVLAPLIASCCAMLRPQA 411 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--EEV 737 K I + A+ I+AD ++ KQI LN+LSNA+ FTP G++ I+ + +++ Sbjct: 412 EAKEIELVQIHADPWDEIVADQQACKQILLNLLSNAVKFTPRRGRVTIAVDCVVDCLDDI 471 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V+DTG+G++ +L + +PF Q Q+ EGTGLGL + + +V+ + G I S Sbjct: 472 QIAVQDTGIGISADDLTRLGEPFFQAMVRQERPHEGTGLGLSIVRGLVELHGGTLLIESE 531 Query: 798 PAKGTLIEIIFP 809 P +GT + + P Sbjct: 532 PDQGTSMIVRLP 543 >gi|240137118|ref|YP_002961587.1| putative PAS sensor signal transduction histidine kinase [Methylobacterium extorquens AM1] gi|240007084|gb|ACS38310.1| putative PAS sensor signal transduction histidine kinase [Methylobacterium extorquens AM1] Length = 786 Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 85/236 (36%), Positives = 144/236 (61%), Gaps = 2/236 (0%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K AE + KS+FLA +SHE+RTPL AI+GF+E+++++ +G LG+PRY +Y I +SG Sbjct: 515 KARAEIANQAKSEFLANMSHELRTPLNAIMGFAELMESEVYGSLGSPRYADYCRDIQQSG 574 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L +++D+L +S+IE+ ++ L + L A++ A++LV A K + I A + Sbjct: 575 TYLLSVIDDILHMSRIEAKRVKLVRRDIDLGTALTSALTLVAKEAASKSVSIDLELAGTL 634 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 +LAD R+++QI LNI+ NA+ FTP G++ + + N V L + DTG+G+ + Sbjct: 635 -HVLADERALQQILLNIIQNAVKFTPERGRVALR-GRSCNGFVHLFIGDTGIGIPKTAIS 692 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 K +PF Q+ + +G+GLGL +A++ + + G I S GTL+ + P+ Sbjct: 693 KLGRPFEQVETNLTRSYKGSGLGLAIARSTAELHGGSLRIRSEEGIGTLVLVRLPM 748 >gi|163792969|ref|ZP_02186945.1| multi-sensor signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159181615|gb|EDP66127.1| multi-sensor signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 757 Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 85/258 (32%), Positives = 151/258 (58%), Gaps = 7/258 (2%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE--VIKNQ 613 L D++ K + +L A AE+ ++ KS FLAR+SHE+RTPL AI+G SE ++ Sbjct: 496 LIATDVTHSKDAELELRKAVDTAEEANAAKSGFLARMSHELRTPLNAILGLSETLMLMED 555 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 R P + EY + ++G ++L ++D+L+ +++++ + +P +V+E + Sbjct: 556 RLSP---AKRREYLGDVMQAGRILLSHIDDILNFARLDADGFAVTPQPTDPRRSVAEVVR 612 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 L+++ A + + + + A N+P +LAD RS++QI +N+LSNA+ F+P G + + Sbjct: 613 LMRVVARSRSVRLEAALARNLPSVLADPRSIRQILINLLSNAVKFSPKHGVVQLMVIQDG 672 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPN-SQQIRGEGTGLGLPLAKAMVDANMGKF 792 + + V D G+G+ ++++ +PF Q+ N S + GTGLGL + K++VD N G Sbjct: 673 S-RLRFSVSDHGIGIPADQIDQIFEPFHQVGNPSLAVPDSGTGLGLSIVKSLVDRNAGAV 731 Query: 793 YIFSTPAKGTLIEIIFPL 810 + STP +GT I + FPL Sbjct: 732 AVDSTPGRGTTISVWFPL 749 >gi|268318298|ref|YP_003292017.1| multi-sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] gi|262335832|gb|ACY49629.1| multi-sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] Length = 785 Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 114/377 (30%), Positives = 195/377 (51%), Gaps = 16/377 (4%) Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 + R+++ E +L + TS G+ I + E +L N ++L GY + D+ + FL Sbjct: 408 LETRRLQTENARLAEVARQTSTGVLITDPERRVLWLNEGFTRLTGYTLADVYGRRPPEFL 467 Query: 502 -----EQNTPSVMNHYLTEILSLDLRQTL-EKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 ++NT ++ L E L + R K G E ++ LR +L + Sbjct: 468 AGERTDRNTLEIIGERLREGLPVHTRIYFYRKDGTGFWDELRIEPLRDAEGRL---IGFM 524 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 HDI+ + + +L A+ AE + K+ FLA +SHEIRTPL +I+GF+E++ Q Sbjct: 525 GLNHDITALVEYEQELKRARAEAETAARLKAAFLANMSHEIRTPLNSILGFAELLDEQ-L 583 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G E+ I RSG +L ++ND+L++S++E+ ++ L EP +L V EA++ + Sbjct: 584 AASGQESLREFTGIIQRSGRRLLRLINDILELSRLEADRLVLRTEPCALHTIVKEAVAEL 643 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A +K + + T +P +L D + QI N++ NA+ +T G++ + T+ + Sbjct: 644 EPLACQKGLTL-TVHTEAVPPVLGDPHRLHQIVTNLVGNALKYTEQ-GEVRVEVQETTED 701 Query: 736 ---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 +V+LRV DTG G+ L +PF + P S+ R EG+GLGL + K +V+ G+ Sbjct: 702 GVRQVVLRVTDTGPGIDPDFLPHLFEPFQRAP-SENDRSEGSGLGLAITKRLVEQMNGRI 760 Query: 793 YIFSTPAKGTLIEIIFP 809 + S P GT + FP Sbjct: 761 TVESAPGNGTTFTVTFP 777 >gi|218438074|ref|YP_002376403.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218170802|gb|ACK69535.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 1068 Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 108/371 (29%), Positives = 193/371 (52%), Gaps = 31/371 (8%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 + IL+ ++ I I+ I N A K+FGY ++++ KPF + L HY Sbjct: 468 RFAGILDNANEAIISIDESHHIRLFNHAAEKIFGYGGDEVMGKPFDLLLPSRYTESHRHY 527 Query: 513 LTEILSLDLRQTLEKI-----TLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISEWK 565 L D +T ++ G K+E+ + I KL + ++ + DI+E K Sbjct: 528 LELFEQGD--ETAREMGGREPVFGRRKDEREFLAEVSISKLNQRGKTIFTAIVRDITERK 585 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q + L AK+ A+ + KS+FLA +SHE+RTPL AI+GF++V LG Y+ Sbjct: 586 QAEEALKKAKEAADNANRAKSEFLASMSHELRTPLNAILGFTQV--------LGRNSYLT 637 Query: 626 YA-----NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + I RSG +LD++ND+L++SKIE+G+ + L + + ++++L A Sbjct: 638 EEDKTNLDIISRSGEHLLDLINDILEMSKIEAGRTTFNEGSFDLYQLLDSLENMLRLRAE 697 Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-------ISTTHT 732 K + + +++P+ I D ++Q+ +N+L NAI FT GG + + ++ + Sbjct: 698 AKGLQLIFDRVSDVPQFIQTDEGKLRQVLINLLGNAIKFTEQGGVTLRVKTGGMMPSSLS 757 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++I + DTG+G+ + E++K + FGQ + + +GTGLGLP+++ V+ GK Sbjct: 758 KKIKIIFEIEDTGLGIASEEIDKLFEAFGQTESGRNSH-QGTGLGLPISQKFVELMGGKI 816 Query: 793 YIFSTPAKGTL 803 + S +G++ Sbjct: 817 GVNSILGRGSI 827 >gi|254559131|ref|YP_003066226.1| PAS sensor signal transduction histidine kinase [Methylobacterium extorquens DM4] gi|254266409|emb|CAX22173.1| putative PAS sensor signal transduction histidine kinase [Methylobacterium extorquens DM4] Length = 786 Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 85/236 (36%), Positives = 144/236 (61%), Gaps = 2/236 (0%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K AE + KS+FLA +SHE+RTPL AI+GF+E+++++ +G LG+PRY +Y I +SG Sbjct: 515 KARAEIANQAKSEFLANMSHELRTPLNAIMGFAELMESEVYGSLGSPRYADYCRDIQQSG 574 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L +++D+L +S+IE+ ++ L + L A++ A++LV A K + I A + Sbjct: 575 TYLLSVIDDILHMSRIEAKRVKLVRRDIDLGTALNSALTLVSKEAASKSVSIDLELAGTL 634 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 +LAD R+++QI LNI+ NA+ FTP G++ + + N V L + DTG+G+ + Sbjct: 635 -HVLADERALQQILLNIIQNAVKFTPEQGRVALR-GRSCNGFVHLFIGDTGIGIPKTAIS 692 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 K +PF Q+ + +G+GLGL +A++ + + G I S GTL+ + P+ Sbjct: 693 KLGRPFEQVETNLTRSYKGSGLGLAIARSTAELHGGSLRIRSEEGIGTLVLVRLPM 748 >gi|206889876|ref|YP_002248033.1| two component system histidine kinase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741814|gb|ACI20871.1| two component system histidine kinase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 618 Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 146/247 (59%), Gaps = 3/247 (1%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ +L AK AE + KS+FLA +SHE+RTPL +IIGF+EV+++Q FG L N + + Sbjct: 368 KERTAELEIAKIHAEAANRAKSEFLANMSHELRTPLNSIIGFTEVLQDQLFGTL-NEKQL 426 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EY I S +L+++ND+LD+SKIE GK L + + V+ ++ + + A++ I Sbjct: 427 EYLKDIHDSAKHLLNLINDILDLSKIEEGKTELELSEFRVSDVVNVSLIMFKEKASKHGI 486 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + + + AD R +KQ+ N++SNA+ FTP GG + I T + + + V D Sbjct: 487 KLDAEISKEADITVTADERKIKQVLFNLVSNAVKFTPDGGSVKI-TAERKEDMIEIVVED 545 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ + +K +PF Q+ + + +GTGLGL L+K++V+ + GK + S KG+ Sbjct: 546 TGIGIKKEDRDKLFQPFSQLETTYTKKYQGTGLGLALSKSLVELHGGKIWCESEYGKGSR 605 Query: 804 IEIIFPL 810 FP+ Sbjct: 606 FGFSFPV 612 >gi|219850003|ref|YP_002464436.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219544262|gb|ACL26000.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 1352 Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 97/296 (32%), Positives = 160/296 (54%), Gaps = 22/296 (7%) Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH-----AKKIAEKESSH--- 584 + +E+ RI K +P + + DI+ W+ + +L A+++AE+ + Sbjct: 784 SGQERFFEARI--KAIPTGDEAIVLVRDITAWRVAELQLQAERDLLAQRVAERTAELSRA 841 Query: 585 ----------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K +FLA +SHE+RTPL I+ SE + + GPL N R I+ SG Sbjct: 842 NAELARSVRVKDEFLANMSHELRTPLNTILTLSESLLEELRGPL-NERQRASIQLIETSG 900 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L ++ND+LD++KIE+G+M L E V++ + ++ L++ A +K+I + Sbjct: 901 RHLLTLINDVLDVAKIEAGRMELVKEVVAVSDVCESSLVLIKEQAAKKQIRLHCVIDAPH 960 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVILRVRDTGVGMTNYEL 753 R LAD R +KQI +N+LSNA+ FTP GG + + TT T+ + V DTG+G+ +L Sbjct: 961 TRFLADPRRLKQILVNLLSNAVKFTPEGGSVELRVTTDTAQGTIAFAVSDTGIGIAPDQL 1020 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + +PF Q+ +S EG+GLGL L + +VD + G + STP G++ + P Sbjct: 1021 PRLFQPFVQLDSSLTREHEGSGLGLALVRRLVDLHGGSVSVTSTPGSGSVFTVTLP 1076 >gi|20090015|ref|NP_616090.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19914982|gb|AAM04570.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 849 Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 113/378 (29%), Positives = 182/378 (48%), Gaps = 22/378 (5%) Query: 445 RKMEIEVMQLCSILEATSDGIAI----INREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 +++E +Q L D + + +R GI ++ N A E+IL K F Sbjct: 445 KRLEAVRLQQTECLRKLVDSVPVPAFCKDRNGIYIACNTAFETFMSMQKEEILGKSMHNF 504 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLE---KITLGSTKEEKLLSLRIIIKKLPFS------ 551 + E+L + E K GS + I+ KL FS Sbjct: 505 APSEIAEKCHTMDIELLKHKKTRVYETSIKFADGSIHQ-------IMFNKLVFSGVTEED 557 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 S M DI+E KQ + K+ AK AE + K +F+ +SHE+RTPL A+IGFS+++ Sbjct: 558 SMLLGIMIDITEHKQAEEKMLQAKMAAEAANRAKINFIVNMSHELRTPLNAVIGFSDLLL 617 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 ++ GPL N + Y I +SG+ +LD++ND+LDIS++E G + L++E V + + E Sbjct: 618 SETAGPL-NEKQKRYTENISKSGSHLLDVINDVLDISRLELGNIELYYETVDIPGVIEEV 676 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 ++ + EK I I + I D KQI N+L+NAI F+ G++ I Sbjct: 677 RRVLSSLSAEKNIRIEYKVEQGLKTIDVDRVKFKQILYNLLNNAIKFSSEDGKVNIK-AR 735 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + V + V+D G+G+ + + PF QI S + G GLGL L K V+ + G+ Sbjct: 736 SEGDMVEISVKDEGIGINEADYARVFLPFVQIDESISRKHGGVGLGLALVKRFVELHGGQ 795 Query: 792 FYIFSTPAKGTLIEIIFP 809 ++ ++P KG+ P Sbjct: 796 VWVEASPGKGSTFTFRIP 813 >gi|225677104|ref|ZP_03788106.1| sensor histidine kinase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590863|gb|EEH12088.1| sensor histidine kinase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 472 Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 94/259 (36%), Positives = 147/259 (56%), Gaps = 6/259 (2%) Query: 565 KQEKN--KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 KQ K +L K+ E+E+++K F A V+HE+RTPL AIIGF+E+IKN+ G + N + Sbjct: 215 KQHKTNIELQQIKEALEQENANKLKFFASVTHELRTPLNAIIGFAELIKNETLGSMDNSQ 274 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y EYA+ I +G +L ++ND+LD SK ES + + +L++ V I+++ E Sbjct: 275 YKEYADDIYNAGTHLLALINDVLDFSKAESSSLTVEKVKFNLNKIVDSCINMLLPKLRET 334 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVILRV 741 I ++ N ++AD + +KQ+ +N+LSN+I FTP GG I ++ + + + Sbjct: 335 EINLKKEIPNKQLLVIADPKRMKQVIINLLSNSIKFTPKGGLIRMVVKENIEKNLLTIEF 394 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D G+G+ ++ K M FGQ + R EGTG+GLPL+K +V+ G F I S G Sbjct: 395 HDNGIGIMQQDIYKVMSVFGQADSGY--RNEGTGIGLPLSKKLVELMGGTFDIKSEAKLG 452 Query: 802 TLIEIIFPLYDTSHPHDCI 820 T I + F Y+ D I Sbjct: 453 TTITLNF-FYEEQTCEDSI 470 >gi|294494969|ref|YP_003541462.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292665968|gb|ADE35817.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 625 Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 111/366 (30%), Positives = 190/366 (51%), Gaps = 22/366 (6%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS----V 508 +L +I E GI +I ++ II N ++ GY E+++ + + + + S + Sbjct: 267 KLKTIYENMPGGILMIGQDYIIKDVNYRTCEITGYKREELVGQLCDIVCPKGSSSKQCPI 326 Query: 509 MNHYLTEILSLD----LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM-HDISE 563 E +D + ++K L + +E I IK Y L + DIS+ Sbjct: 327 WEDGQEEFRGMDTSIKCKNGIKKPILKNAQE-------ITIK----GDTYILELFQDISQ 375 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K + AKK AE+ + KS+FLA +SHE+RTPL ++IGFS+++ + G L N Sbjct: 376 RKNAEENAIEAKKAAEQANQTKSEFLANMSHELRTPLNSVIGFSDILSKEVRGKL-NDSQ 434 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 +Y + I +SG+ +L ++ND+LD+SKIE+G+ L + L EA+ E L++ ++K Sbjct: 435 KKYVSNITKSGSHLLSLINDILDLSKIEAGQKQLEYSSFDLHEALDEISILIKPLISKKN 494 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 I ++ R+ AD + KQI N+LSNA FTP G I I + +++ + V+D Sbjct: 495 IDLQMDLPPEDSRVYADRKKFKQIMYNLLSNASKFTPDKGTITI-VANQEKDKLKVAVQD 553 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ + +PF Q+ +++ +GTGLGL LA+ +V+ + G+ + S G+ Sbjct: 554 TGMGIPEADQATIFEPFQQVKSAKSSEYKGTGLGLSLARELVEMHGGQVGLKSEVGMGST 613 Query: 804 IEIIFP 809 P Sbjct: 614 FTFTIP 619 >gi|258625183|ref|ZP_05720099.1| Signal transduction histidine-protein kinase barA, putative [Vibrio mimicus VM603] gi|258582558|gb|EEW07391.1| Signal transduction histidine-protein kinase barA, putative [Vibrio mimicus VM603] Length = 1053 Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 116/385 (30%), Positives = 195/385 (50%), Gaps = 22/385 (5%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTNRAVSKLFGY 487 Q G+E E I KR E+ V + S I+E +AII+ +G+IL N+ +GY Sbjct: 141 QAGLEQE-----IAKRTKELAVSEELSRTIIEGAPSSVAIIDSQGLILLWNKTAITTYGY 195 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS---TKEEKL--LSLR 542 E+ L +P L+ P + LT L + +Q L + + T++ L + L Sbjct: 196 TAEEALGQPLLTLLKMALPPELAAALTLPLRAEQQQLLNEAFYEAETYTRDGTLVPIDLG 255 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + I +L ++ + D++ K + +L+ AK AE+ KS FLA +SHEIRTP+ A Sbjct: 256 VSIFELNGQCQAAMFLRDVTARKAAEQELNEAKAKAEEAVEVKSMFLANMSHEIRTPMNA 315 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 IIG S + P+ +Y + I S L+L I+ND+LD SKIE+GK+++ Sbjct: 316 IIGMSHLALKTEL----TPKQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIEHIEF 371 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPS 721 SL+E + + A +K + + S IP +++ D + Q+ +N+++NA+ FT Sbjct: 372 SLEEVLHNVSMVTGQKAFDKGLELLFSLPREIPHKLIGDPLRIGQVVINLVNNAVKFTEQ 431 Query: 722 GGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 G+I +S + +++ V DTG+GMT + + F Q S + GTGLG Sbjct: 432 -GEISVSVQVGERQPGRIKLLFNVSDTGIGMTEKQTRNLFQAFTQADGSTTRKYGGTGLG 490 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGT 802 L +++ +V+ G+ + S P G+ Sbjct: 491 LSISRRLVELMEGEISVTSKPDAGS 515 >gi|20092182|ref|NP_618257.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19917410|gb|AAM06737.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 1447 Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 108/370 (29%), Positives = 190/370 (51%), Gaps = 9/370 (2%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 +K E ++ L +++E+++D I + +GII S N+ +++GY E+++ K ++ N Sbjct: 1072 KKAEEKIQTLANVVESSNDAIITESLDGIITSWNKGAEQVYGYLAEEVMGKNMSILESDN 1131 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHD 560 + + + Q E TL K+ +L++ + + + S S D Sbjct: 1132 LKGEIKQLVDRVKQGKKVQNHE--TLRLKKDGTILNISVTLSPVFDVSGKLVAISNIAGD 1189 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E K +N L H K++AE + K+DFLA +SHE+RTPL +IIGFS+++ Q +G L N Sbjct: 1190 ITEKKISEN-LLHEKQMAEIANRTKNDFLANMSHELRTPLNSIIGFSDMLYEQAYGEL-N 1247 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + + I SG +L+++N +LD+SKIE+ KM L++ L + +++ A+ Sbjct: 1248 RKQLRAIGNISSSGKHLLNLINGILDLSKIEANKMELNYREFDLATKLELIRNVLYPVAD 1307 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 +K I I + +I AD +I N++ NAI F+ + I N V + Sbjct: 1308 KKNIDIEIDMDTELTKICADEEKFTRIMYNLVDNAIKFSYENSLVKIGARKNGN-LVEIT 1366 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D G+G+ + K KPF Q+ + + +GTGLGL L K +V+ + G + S + Sbjct: 1367 VTDAGIGIKAEDQHKLFKPFSQVNSFPSKKFQGTGLGLSLVKQIVNLHGGYVWFRSEQGE 1426 Query: 801 GTLIEIIFPL 810 G+ P+ Sbjct: 1427 GSTFAFAIPI 1436 >gi|296121939|ref|YP_003629717.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] gi|296014279|gb|ADG67518.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] Length = 823 Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 115/396 (29%), Positives = 187/396 (47%), Gaps = 40/396 (10%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +IL D I I+ G+I S N A K+FGY +++ + + + + YL + Sbjct: 272 AILGTAVDAIITIDESGLIKSLNSAAQKMFGYSHHEMIGENVRMLMPDPYRGEHDGYLQK 331 Query: 516 ILSLDLRQT--LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWK------ 565 R+ + + +G ++ + + + ++ S T + DI+E K Sbjct: 332 YQQTGTRRVIGIGREAVGRRRDGSTFPMELSVSEVRQGSRRYFTGIVRDITERKRYEARL 391 Query: 566 ----------------------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 Q+ LS A+K AE + KSDFLA +SHEIRTP+TAI Sbjct: 392 RESIEESSRSQARLKIQAEELAQQATSLSEARKSAEAANRAKSDFLANMSHEIRTPMTAI 451 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 +GF+E Q L P E + I R+G +L ++ND+LDISKIESG + Sbjct: 452 LGFAE----QVSASLNRPEDCEALSIIRRNGEHLLKLINDILDISKIESGLFEIEKTTCD 507 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG 722 L + + + + A +K+I + +FA N+P + D+ +KQ +N+LSNA+ FT G Sbjct: 508 LRVLIHDLMQSIGPKAAQKKIGLTVNFATNVPVCIETDVLRLKQSLMNLLSNAVKFTEQG 567 Query: 723 G---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 G + ++ T+ + +++ DTG+G+ L+K PF Q S R GTGLGL Sbjct: 568 GVDLSVRMTEEFTTAPRIQMQICDTGIGIAAEHLDKLFIPFSQADTSVSRRFGGTGLGLA 627 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 ++K +++ G + S G+ I P SH Sbjct: 628 ISKRLIELMGGDLQVKSILGSGSSFTITLPTGKISH 663 >gi|163794545|ref|ZP_02188516.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159180269|gb|EDP64792.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 509 Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 87/244 (35%), Positives = 145/244 (59%), Gaps = 3/244 (1%) Query: 567 EKNKLS-HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 E+ +++ +K AE + KS+FLA +SHE+RTPL AIIGFSE++ + GPL PR Sbjct: 238 ERERMAVEGQKAAEAANQAKSEFLAMMSHELRTPLNAIIGFSELMASGLHGPL-PPRQHG 296 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 YA I +SG +L+++ ++LD+++ ES ++NL + L+ + + L+ A+E R+ Sbjct: 297 YAKDIQQSGRHLLNVIGNILDLAEAESKQINLFEVDIELEAVIEPCLRLIAPQASEGRVQ 356 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + + + R+L D+ ++Q LN+LSNA+ FT GG + +S + + + + V DTG Sbjct: 357 VTATLPTGV-RLLCDVTKLRQTLLNLLSNAVKFTDPGGTVRVSVSVQGDGLLDITVADTG 415 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ ++ + +K F Q+ + EG GLGLPLAKA+ +A+ G + S GT Sbjct: 416 IGIRPEDVPRILKRFEQVESQMHRSREGAGLGLPLAKALTEAHGGVLEVTSDFGHGTTAR 475 Query: 806 IIFP 809 II P Sbjct: 476 IILP 479 >gi|302036178|ref|YP_003796500.1| putative histidine kinase [Candidatus Nitrospira defluvii] gi|300604242|emb|CBK40574.1| putative Histidine kinase, containing PAS domain S-box [Candidatus Nitrospira defluvii] Length = 578 Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 108/352 (30%), Positives = 174/352 (49%), Gaps = 10/352 (2%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 I+E D + + G I N +F P + + KP T ++ P+ + +T Sbjct: 193 IIETALDAVITTDATGTINGWNTQAELMFDVPRTEAIGKPLTTYVSAACPASGSTPITPY 252 Query: 517 LSLDLRQTLEKIT--LGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLS 572 L L + + LG T + + I + L +++ + DISE KQ++ +L Sbjct: 253 AGLVPGAILNRRSEMLGLTYQGTSFPVEIAMSCLAAGGTQQFTIFVQDISERKQQEERLC 312 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 AK+ AE S KS FLA +SHEIRTP+ ++G +E++ PL N YA+ + Sbjct: 313 RAKEAAEAASLAKSQFLANMSHEIRTPMNGVLGMTELLLTT---PL-NDTQRRYAHTVHN 368 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG +L I+ND+LD SKIE+G++ L + P L + ++E I L A +K + + + Sbjct: 369 SGTNLLHIINDILDFSKIEAGRLVLEYIPFGLRQLLTETIGLYHEQARKKGLALSVTMTP 428 Query: 693 NIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMTN 750 +IP + D ++QI N++ NA+ FT +G + + V + V DTG+G+ Sbjct: 429 DIPDMAHGDPHRLRQILTNLVGNALKFTETGTVAVFVRPDEGRPGRVRIEVTDTGIGIPL 488 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 EK F Q S + GTGLGL + K +V G+ + STP +GT Sbjct: 489 QAQEKIFDSFSQADGSMTRKYGGTGLGLAIVKQLVGMMGGQLGLTSTPGQGT 540 >gi|258622445|ref|ZP_05717467.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258585145|gb|EEW09872.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 1053 Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 115/385 (29%), Positives = 196/385 (50%), Gaps = 22/385 (5%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTNRAVSKLFGY 487 Q G+E E I KR E+ V + S I+E +AII+ +G+IL N+ +GY Sbjct: 141 QAGLEEE-----IAKRTKELAVSEELSRTIIEGAPSSVAIIDSQGLILLWNKTAITTYGY 195 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS---TKEEKL--LSLR 542 ++ L +P L+ P + LT L ++ +Q L + + T++ L + L Sbjct: 196 TADEALGQPLLTLLKMALPPELAAALTLPLRVEQQQLLNEAFYEAETYTRDGTLVPIDLG 255 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + I +L ++ + D++ K + +L+ AK AE+ KS FLA +SHEIRTP+ A Sbjct: 256 VSIFELNGQCQAAMFLRDVTARKAAEQELNEAKAKAEEAVEVKSMFLANMSHEIRTPMNA 315 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 IIG S + P+ +Y + I S L+L I+ND+LD SKIE+GK+++ Sbjct: 316 IIGMSHLALKTEL----TPKQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIEHIEF 371 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPS 721 SL+E + + A +K + + S IP +++ D + Q+ +N+++NA+ FT Sbjct: 372 SLEEVLHNVSMVTGQKAFDKGLELLFSLPREIPHKLIGDPLRIGQVVINLVNNAVKFTEQ 431 Query: 722 GGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 G+I +S + +++ V DTG+GMT + + F Q S + GTGLG Sbjct: 432 -GEISVSVQVGERQPGRIKLLFNVSDTGIGMTEKQTRNLFQAFTQADGSTTRKYGGTGLG 490 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGT 802 L +++ +V+ G+ + S P G+ Sbjct: 491 LSISRRLVELMEGEISVTSKPDAGS 515 >gi|294496206|ref|YP_003542699.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292667205|gb|ADE37054.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 1108 Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 91/243 (37%), Positives = 141/243 (58%), Gaps = 6/243 (2%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE + KS+FLA +SHE+RTPL +IIGFS+++ + FG L + +Y I++SG + Sbjct: 857 AEYANKSKSEFLANMSHELRTPLNSIIGFSDILNGETFGKLTQKQE-KYTANINKSGKHL 915 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++N++LD+SKIE+GKM + L+ S+ S++ L A +K I + S + +I I Sbjct: 916 LYLINEILDLSKIEAGKMEFVCDDFKLNSVFSDIESIISLQAQKKSIDLEISKSVDI-EI 974 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 AD +KQI N+LSNAI FT G++ +S + V + V+DTG+G+ + E Sbjct: 975 NADKSKIKQIIFNLLSNAIKFTDENGRVSMSARKVDRDRVEIAVKDTGIGIPEDKFETIF 1034 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL----YDT 813 PF Q+ S + GTGLGL L K V+ + G+ ++ S KG+ PL +D+ Sbjct: 1035 DPFMQVDASTSRKYGGTGLGLALVKKYVEKHGGEVWVESEIGKGSTFMFTIPLKQPEFDS 1094 Query: 814 SHP 816 HP Sbjct: 1095 IHP 1097 >gi|283779193|ref|YP_003369948.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068] gi|283437646|gb|ADB16088.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068] Length = 827 Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 100/339 (29%), Positives = 178/339 (52%), Gaps = 21/339 (6%) Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 A+++ +L+ +R ++K GYPVE F F+E H + D Q L Sbjct: 338 AVVHLHSEVLARSRELTKELGYPVEG-----FRTFVELAERDGFEHREWTYIRRDGSQLL 392 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 + + ++ + ++I Y D++EWKQ + +L AK AE + K Sbjct: 393 VNLVVTCVRD---IDGQVI--------GYLGVAVDVTEWKQSERELKLAKIAAEAANHAK 441 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 S+FLA +SHE+RTP+TAI+GF +++ NP+ I+ A I R+G ++ ++ND+L Sbjct: 442 SEFLANMSHELRTPMTAILGFVDIVAEN---VSSNPQLIDAAATIKRNGEHLMGLLNDIL 498 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSV 704 D+SKIE+G++ + ++ ++ I L+++ ++ K + + F IP I D + Sbjct: 499 DLSKIEAGRLEVQKHSCNVRALTADVIQLMRVRSDAKGLELSIEFQGAIPETIETDSTRL 558 Query: 705 KQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 +QI +N++ NAI FT +G QI++ + +RDTG+G+T ++ K +PF Q+ Sbjct: 559 RQILINLIGNAIKFTENGRVQILVRLERRGTPMLEFEIRDTGIGITPEQMTKLFRPFTQV 618 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 S + GTGLGL ++K + + G + S +G+ Sbjct: 619 DTSLTRKFGGTGLGLTISKRLAEILGGTITVSSKAGEGS 657 >gi|258592849|emb|CBE69158.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 731 Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 93/249 (37%), Positives = 138/249 (55%), Gaps = 21/249 (8%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S HK+ FL +SHE+RTPL AI+GFS+++ +Q FGPL + YAN+I SG +L ++ Sbjct: 472 SRHKTAFLTNMSHELRTPLNAILGFSDLLCDQTFGPL-TAKQARYANHIQTSGRHLLALI 530 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 NDLLD+SK+E+GK+ L EP L EA++ A+ +Q A+ KR+ I + AD Sbjct: 531 NDLLDLSKVEAGKLTLRLEPFDLSEALTVAVYEIQPVADAKRLTIVPDIDTAPITLTADP 590 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIIS-------------------TTHTSNEEVILRVR 742 KQI N+LSNA+ FTP GG I +S T H S + V + V Sbjct: 591 VRFKQIIYNLLSNAVKFTPEGGTIRVSASLGRRESGVEAPPHPIPTTLHHSGDFVEIAVT 650 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKG 801 DTG+G+ +L + F Q+ + +G+GLGL L K +V+ + G + S P +G Sbjct: 651 DTGIGIAAEDLSRLFTRFTQLEIETTKQFQGSGLGLALTKQLVELHGGTITVTSAGPGQG 710 Query: 802 TLIEIIFPL 810 + + P+ Sbjct: 711 SRCTVRLPM 719 >gi|255039050|ref|YP_003089671.1| histidine kinase [Dyadobacter fermentans DSM 18053] gi|254951806|gb|ACT96506.1| histidine kinase [Dyadobacter fermentans DSM 18053] Length = 710 Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 90/239 (37%), Positives = 148/239 (61%), Gaps = 10/239 (4%) Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 +A + + K +FLA+V+HEIRTPL AIIGFS+++ QR + + E + I S + Sbjct: 325 MATEAAKQKGEFLAQVTHEIRTPLNAIIGFSQLMDTQRL----DGQEKESVDAIQSSSRI 380 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIP 695 +L +VNDLLD SK+ESGK+ L ++P + +AV+E ++L+++ A+EK I I A N Sbjct: 381 LLTLVNDLLDFSKLESGKLTLQYQPFNPVDAVNEVVALMRVLASEKNIEIEPKIAIGNRV 440 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNY 751 +L D VKQ+ +N+LSNAI FTP+ G++++ + +E + +RV+D+G+G+ Sbjct: 441 CLLGDEFRVKQVVINLLSNAIKFTPARGKVVVEASLDQSEGQKKCLKIRVKDSGIGIAPE 500 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 L++ + F QI + + GTGLGL + K +V+ + GK + S KG+ +I P+ Sbjct: 501 HLKEIFEDFKQIGAASAGK-PGTGLGLAICKRIVELHGGKISVESVVGKGSEFKIGIPM 558 >gi|117924342|ref|YP_864959.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117608098|gb|ABK43553.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1041 Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 111/384 (28%), Positives = 194/384 (50%), Gaps = 29/384 (7%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L +IL+ T +G+ ++ G I N A +++FGY + D + +P +L P Sbjct: 532 RLRAILDNTHEGVVVMEASGQIEMLNPAAARIFGYTLAD-MPQPTIQWLLPEFP------ 584 Query: 513 LTEIL----------SLDLRQT---LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559 LT+IL + D+ E S LL + + L S+ + Sbjct: 585 LTDILNDAHLHEGGGAGDVSHANLYREMAANRSDGSRMLLGVSVSSFHLEESAVCVAVVR 644 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ K E+ +L AK++AE+ S+ K+ FL+ +SHE+RTP+ AI+GF++V+++ PL Sbjct: 645 DITARKMEEIELKQAKEVAERASAAKTRFLSSMSHELRTPMNAILGFAQVMQSDPNEPLS 704 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + E I ++G +L+++ND+LD++KIE +++L PV + E + EA++LV A Sbjct: 705 ESQR-ECTREIIQAGGHLLELINDVLDLAKIEENRISLKMAPVHVQEVIREAVALVTPMA 763 Query: 680 NEKRILIRTSFANNIPR---ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 N K I + + + AD +KQI +N+ +N + + GG++ IS Sbjct: 764 NRKGIRLYHGMGEGVCERCDVQADRTRLKQILINLATNGVKYNREGGEVEISCRLAEAGR 823 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + VRDTG+G+ + +PF ++ I EGTG+GL + K +V+A G + S Sbjct: 824 ARIEVRDTGIGIAALKQGDIFEPFHRLVEDGTI--EGTGIGLSIVKRLVEAMGGTLGLES 881 Query: 797 TPAKGTLIEIIFP---LYDTSHPH 817 +G+ P + + PH Sbjct: 882 QEGQGSRFWFQLPNSGICSPTKPH 905 >gi|294497989|ref|YP_003561689.1| two-component sensor histidine kinase/ response regulator [Bacillus megaterium QM B1551] gi|294347926|gb|ADE68255.1| two-component sensor histidine kinase/ response regulator [Bacillus megaterium QM B1551] Length = 1012 Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 120/377 (31%), Positives = 204/377 (54%), Gaps = 24/377 (6%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-KPFTVFLEQNTPSVMNHYLT 514 S+L S+G+ + EG +++ N +K+ P + IL PF + E P L Sbjct: 502 SVLSTMSEGVVFHDLEGNLIAANAYAAKILNVPYDQILSVNPFGLDWEIIHPDGTPFALE 561 Query: 515 EILSLDLRQTLEKI---TLG-STKEEKLLSLRIIIKKLPFSSCYS---LTMHDISEWKQE 567 +I S+ +T E + +G E+KL L + + L S Y +T +DI++ +++ Sbjct: 562 DIPSVRCLRTKEPVRNTVMGIYLNEKKLTWLSVNAEPLQESKYYKGVVVTFYDITKQQEQ 621 Query: 568 KNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + L H AK+ AEK + KS+FL++VSHE+RTPL +I+G++++++ Q L Sbjct: 622 EQDLLHSNQQMIIAKEEAEKANQAKSEFLSKVSHELRTPLNSILGYAQILEEQGEKDL-T 680 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + + I ++GN +L ++N+ LD+SKIESG + ++ EPVS+ EA+ +A+ +++ A Sbjct: 681 EKQLNRIRKILKAGNHLLYLINETLDLSKIESGHLAINLEPVSVKEAIEDALKIMKPLAK 740 Query: 681 EKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 +K ++ T F A + D +QI LN+L+NAI ++P+ I I T T + IL Sbjct: 741 DKHSILYTRFHAYQEVFVEVDELRFQQILLNLLTNAIKYSPAYRDITIYTEITQHHVTIL 800 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 + D G G+ EL + +PF +I ++ +GTG+GL L K +V G + S Sbjct: 801 -IEDRGFGIPASELNRIFEPFYRI---NRLEKDGTGIGLALVKQLVVLMNGTCGVRSEEG 856 Query: 800 KGTLIEIIFPLYDTSHP 816 KG+ + FPL HP Sbjct: 857 KGSTFWVRFPL---VHP 870 >gi|254456902|ref|ZP_05070330.1| sensory box sensor histidine kinase/response regulator [Campylobacterales bacterium GD 1] gi|207085694|gb|EDZ62978.1| sensory box sensor histidine kinase/response regulator [Campylobacterales bacterium GD 1] Length = 1175 Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 116/367 (31%), Positives = 191/367 (52%), Gaps = 17/367 (4%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF--TVFLEQN--TPSVM 509 L SI + ++G+ +I+ G ++ +N++ S L +++L F V +E T S Sbjct: 415 LNSITDNITEGLMVIDDTGNLIYSNKSASTLLEQRDDELLDSNFYSDVLVENENITLSKF 474 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569 + + + L L K G + ++ ++ ++ + DIS+ K ++ Sbjct: 475 DSLMKKSGVLHSDDVLFKTKNGKNIDIEMSAVSVLRHN---KKSLIVVFKDISDRKILQD 531 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 L AK IAE+ S KS+FLA +SHE+RTPL IIG S + NQ +PR Y + Sbjct: 532 SLIEAKLIAEEASKTKSNFLANMSHELRTPLNGIIGMSYIALNQD----TDPRIKNYLDK 587 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SGN++L I+ND+LD SKIE+GK+++ +LD+ + + + L A EK + + Sbjct: 588 IHTSGNILLKIINDILDFSKIEAGKLDVESIEFNLDDMLKKLSDFIHLKAYEKDLELVIF 647 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVILRVRDT 744 N P ++ D + QI LN+LSN+I FT G+I IS ++ +++ +RDT Sbjct: 648 KDQNTPTSVIGDPLRINQILLNLLSNSIKFTDH-GEIEISVEALILDAADSKLVFTIRDT 706 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 GVGMT EL++ F Q ++ R GTGLGL + K +++ G + S GT Sbjct: 707 GVGMTKEELDRIFNSFSQADSTIARRYGGTGLGLTITKQLIELMDGNISVESEKGVGTTF 766 Query: 805 EIIFPLY 811 ++ PL+ Sbjct: 767 KVELPLH 773 >gi|46202248|ref|ZP_00053520.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 454 Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 90/250 (36%), Positives = 138/250 (55%), Gaps = 1/250 (0%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI++ K+ + L AK+ AE + KS FLA +SHE+RTPL A+IGFSE I GP Sbjct: 200 DITQRKRAEAALVSAKQEAEAANRAKSQFLATMSHELRTPLNAVIGFSEAILAGAAGPAS 259 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R +EY I +G + ++ D+LD+S+IE+G+ L E E V A L++ + Sbjct: 260 LERCVEYMELIHSAGQHLRALIEDILDVSRIEAGRTELDEEDCDPTELVRAAARLLEHKS 319 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + A +PR+ D R ++QI LN+ NA+ FTP+GG++ I T + + L Sbjct: 320 VVSGVDFTVVIAPGLPRMRLDPRRIRQILLNLAGNALKFTPTGGKVGICATLVPD-GLAL 378 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ K + F Q +S R +G+GLGL + + V+A+ G + S P Sbjct: 379 VVSDTGIGIAPEHHAKIWQAFYQADSSLSRRHQGSGLGLAIVRHFVEAHGGTVSLDSAPG 438 Query: 800 KGTLIEIIFP 809 +GT I ++ P Sbjct: 439 QGTRITVLLP 448 >gi|297568619|ref|YP_003689963.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296924534|gb|ADH85344.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 1263 Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 94/270 (34%), Positives = 144/270 (53%), Gaps = 13/270 (4%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 HD++E KQ++ L A++ AE+ S KS+FLA +SHEIRTP+ A+IG S+++ Sbjct: 517 HDVTERKQQQEALEQARREAERASRAKSEFLANMSHEIRTPMNAVIGLSQLLAQTEL--- 573 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N + I +S ++L I+ND+LD SKIESG++ L L+E V + +L Sbjct: 574 -NEEQRDQVRKIHQSSRMLLGIINDILDFSKIESGRLELECRDFRLNEVVEQVATLFGDK 632 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSN 734 + + + ++PR L D + QI +N+LSNA FT GG + I +N Sbjct: 633 VHAGGLELLYDIPPHLPRTLVGDSLRLSQILVNLLSNATKFTERGGTVELGIRVVAPVAN 692 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++ LR VRDTG+GM+ +L + +PF Q S R GTGLGL +++ +V+ G+ Sbjct: 693 DQATLRFHVRDTGIGMSKEQLARLFRPFSQADTSTTRRYGGTGLGLVISRRLVEKMGGEL 752 Query: 793 YIFSTPAKGTLIEIIFPL---YDTSHPHDC 819 + S P KG+ L D DC Sbjct: 753 EVESAPGKGSTFSFTLTLPLGRDRRGAIDC 782 >gi|262403062|ref|ZP_06079622.1| hypothetical protein VOA_001043 [Vibrio sp. RC586] gi|262350561|gb|EEY99694.1| hypothetical protein VOA_001043 [Vibrio sp. RC586] Length = 1045 Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 115/384 (29%), Positives = 190/384 (49%), Gaps = 20/384 (5%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTNRAVSKLFGY 487 Q G+E E I KR E+ V + S I+E + II+ +G+IL N+ +GY Sbjct: 141 QAGLEQE-----IAKRTKELAVSEELSRTIIEGAPSSVVIIDSQGVILLWNKIAMTTYGY 195 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL-----EKITLGSTKEEKLLSLR 542 E+ L +P L+ P + LT L ++ +Q+L E T + L Sbjct: 196 TSEEALGQPLFTLLKMALPPKLATVLTLPLQVEQQQSLNDAFFEADTYTRDGTWVPIDLG 255 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 I I +L ++ + D++ K + +L+ A+ AE+ KS FLA +SHEIRTP+ A Sbjct: 256 ISIFELNGQCQAAMFLRDVTVRKAVEQELNEARAKAEEAVEIKSMFLANMSHEIRTPMNA 315 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 IIG S + + + +Y + I S L+L I+ND+LD SKIE+GK+++ Sbjct: 316 IIGMSHLALKTEL----SAKQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIERIEF 371 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721 SLDE + + A +K + + S IPR ++ D + Q+ +N+++NA+ FT Sbjct: 372 SLDEVLHNVSMVTGQKAFDKGLELLFSLPREIPRKLIGDPLRIGQVVINLVNNAVKFTEQ 431 Query: 722 GG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 G + + T ++ V DTG+GMT + + F Q S + GTGLGL Sbjct: 432 GEISVNVQVGERQTGRIQLQFHVMDTGIGMTEKQTRHLFQAFTQADGSTTRKYGGTGLGL 491 Query: 779 PLAKAMVDANMGKFYIFSTPAKGT 802 +++ +V+ G+ + S P +G+ Sbjct: 492 SISRRLVELMEGEISVISQPEEGS 515 >gi|209522754|ref|ZP_03271312.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209496803|gb|EDZ97100.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1769 Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 83/232 (35%), Positives = 139/232 (59%), Gaps = 8/232 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +FLA +SHE+RTPL AI+G +E + + FGP+ N R ++ ++RS + +L ++ND+ Sbjct: 1376 KDEFLANMSHELRTPLNAILGMTEGLHEEVFGPV-NDRQLKALQTVERSASHLLALINDI 1434 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD++KIESG++ L P ++ +I+ ++ A +KRI + + N+P I+ D R + Sbjct: 1435 LDVAKIESGQVELECSPTAIAPLCKSSIAFIKQQALKKRIQLSVNLPLNLPDIILDERRI 1494 Query: 705 KQIALNILSNAIHFTPSGGQIIISTT-----HTSNEEVILR--VRDTGVGMTNYELEKAM 757 +Q+ +N+L+NA+ FTP GG I + E LR VRDTG+G++ ++K Sbjct: 1495 RQVLINLLNNAVKFTPEGGSITLEVILPPPREAEGESPYLRFSVRDTGIGISPENIKKLF 1554 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +PF QI ++ + +GTGLGL L K +V+ + G+ + S G+ I P Sbjct: 1555 QPFMQIDSALNRQYQGTGLGLALTKQIVELHGGRVGLTSEVGVGSCFSIDLP 1606 >gi|159045886|ref|YP_001534680.1| multi-sensor hybrid histidine kinase [Dinoroseobacter shibae DFL 12] gi|157913646|gb|ABV95079.1| multi-sensor hybrid histidine kinase [Dinoroseobacter shibae DFL 12] Length = 781 Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 121/376 (32%), Positives = 190/376 (50%), Gaps = 22/376 (5%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQ 503 R E E L + +D + + +R G I N + +++ GY VE+ L R P + Sbjct: 246 RAREREARHLAMVAANANDSVIVTDRAGHIEYVNASFTRVTGYTVEEALGRTPAELL--- 302 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYSL---- 556 N P+ + IL + R+T E + L TK K + + I + S + Sbjct: 303 NGPNTDTEAIEAIL--NARRTHEPVRLELINRTKFGKDIWVETNITPMMDSDGNVVGEVA 360 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 DI++ KQ + +L+ AK AE+ + K+ FLA +SHEIRTPL IIG S+V+ + G Sbjct: 361 IERDITQAKQREQELAAAKTAAEEGARAKAQFLAMISHEIRTPLNGIIGMSDVMLS---G 417 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL +P + I SG +L I+ND+LD+SK+E+GKM + P L + A+ LV+ Sbjct: 418 PL-DPEHRGNLQTILASGEGLLTIINDILDLSKLEAGKMEIDQLPFDLRAELQAALDLVR 476 Query: 677 LYANEKRILIRTSFANNIP--RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 ANEK + + + +P RIL D V+Q+ LN++ NAI FT +G + + T Sbjct: 477 PLANEKGLSLSVDV-SGLPEGRILGDPGRVRQVFLNLMGNAIKFTRAGAVSLRAAVDTGA 535 Query: 735 E--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 V L V+DTG+G+ L++ F Q ++ GTGLGL +++ + G Sbjct: 536 APPRVTLAVQDTGIGIPADRLDQIFDAFAQADSATTRDFGGTGLGLAISRQLTQQMGGDI 595 Query: 793 YIFSTPAKGTLIEIIF 808 + S P KG+ + F Sbjct: 596 TVTSVPGKGSCFTMEF 611 >gi|309789734|ref|ZP_07684314.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308228220|gb|EFO81868.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 1491 Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 94/271 (34%), Positives = 153/271 (56%), Gaps = 20/271 (7%) Query: 558 MHDISEWKQEKNKLSH-----AKKIAEKESS-------------HKSDFLARVSHEIRTP 599 + DI+ KQ + L H A+++AE+ K DFLA +SHE+RTP Sbjct: 938 VRDITARKQMERDLLHERQSLARRVAERTEDLSRANQELARAVRAKDDFLANMSHELRTP 997 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 L AI+ SE + Q GPL N R I I+ SG +L ++ND+LD+SKIE+G+M+L Sbjct: 998 LNAILALSEGMLEQLRGPL-NERQIAALRNIESSGRHLLALINDILDLSKIEAGRMDLQI 1056 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 + + + + + ++ ++ A++K+ I + R AD R +KQ+ +N+L+NA+ FT Sbjct: 1057 DQILVSDVCAASMIFIKEQASKKQQKINLIQEESGLRFYADQRRLKQMLVNLLTNAVKFT 1116 Query: 720 PSGGQI-IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 P GGQI +I S + + V DTG+G+++ E+++ KPF Q+ + + EGTGLGL Sbjct: 1117 PVGGQIDLIVKADASQGVLAITVADTGIGISDEEMQRLFKPFIQLDSGLTRQHEGTGLGL 1176 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L + + + + G + STP G+ I+ P Sbjct: 1177 ALVRRLAELHGGSVSLESTPGVGSRFTILLP 1207 >gi|220925321|ref|YP_002500623.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium nodulans ORS 2060] gi|219949928|gb|ACL60320.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium nodulans ORS 2060] Length = 782 Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 83/235 (35%), Positives = 146/235 (62%), Gaps = 2/235 (0%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K AE + KS+FLA +SHE+RTPL AI+GF+EV++++ FG LG+ +Y EY I SG Sbjct: 515 KAQAESANRSKSEFLANMSHELRTPLNAILGFAEVMQDEVFGQLGSEKYREYCRDIRSSG 574 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 + +L +++D+LD+S+IE+ ++ L +PV + EA+ A+ L+ A K + + + + Sbjct: 575 HYLLSVIDDILDMSRIEARRVTLVKQPVPVAEALERALKLIAEPARAKGLTLSVEMSADA 634 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 +LAD R++ QI +N+L NA+ FTP G++ + T + + V + V D+G+G+ L Sbjct: 635 V-VLADERALHQILVNLLQNAVKFTPEAGRVAVR-TRRALDAVHIFVEDSGIGIPKAVLP 692 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K PF Q+ ++ +G+GLGL +++++ + + G+ I S GT++ + P Sbjct: 693 KLGAPFEQVESNFSRSFKGSGLGLAISRSLTELHGGRLRIRSEVGCGTIVLVRLP 747 >gi|146308663|ref|YP_001189128.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] gi|145576864|gb|ABP86396.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] Length = 1237 Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 107/382 (28%), Positives = 198/382 (51%), Gaps = 20/382 (5%) Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 + RK+ E +L ++EA+ + I +++ G I NR ++FGY + +L +P + L Sbjct: 456 LRARKVAEERFRL--VVEASPNAIVLVDGLGRIAMVNRQTEQMFGYERQMLLGEPIEMLL 513 Query: 502 EQNTPSVM--NHYLT----EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SC 553 P+ + H + + R + G +E +L+ L + + + S Sbjct: 514 ----PAALRGGHVALRRGYQAMPEQRRMGGNRELFGQHREGRLIPLEVGLSPIRSGNESL 569 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + DISE + + KL + + +KS+FLA +SHE+RTPL +I+ S+ ++ Sbjct: 570 VQAVIIDISERRAAEQKLREQAEQLLLANRYKSEFLANMSHELRTPLNSILILSDQLRQN 629 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G L + ++A+ + R+G+ +L ++ND+LD++K+ESG+M L EP+++ + + E + Sbjct: 630 LAGNL-TEKQTKHADIVHRAGSDLLQLINDVLDLAKVESGRMQLKLEPINMQDVLVELDA 688 Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 ++ A K + + T +PR++ +D + QI N+LSNA+ FT G + ++ Sbjct: 689 SLRPMAELKGLSLHTQIDAGVPRVIHSDRVRLHQILRNLLSNALKFTDQGEVTLTVSSEG 748 Query: 733 SNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 E+ + VRDTG+G+ + E+ + F QI S R GTGLGL + + +V A Sbjct: 749 RQEDERELLCFSVRDTGIGIDPAQHEQVFQAFQQIDGSTSRRFGGTGLGLAITRQLVLAL 808 Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810 G + STP +G+ + P+ Sbjct: 809 DGDIGLQSTPGQGSTFTVRLPV 830 >gi|330982346|gb|EGH80449.1| PAS protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 637 Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 132/435 (30%), Positives = 227/435 (52%), Gaps = 36/435 (8%) Query: 398 ARLHTIQWNREN-SLAMTFIPFEKANQFPEN--MPQNGIEPEDVDTRINKRKMEI----E 450 AR+H +Q N + +L +P Q PE + Q G + + +R+ + E Sbjct: 215 ARVHQVQRNAQRLALGHPLLP-----QPPEKDEIGQLGTRLVEAGQLLAERERALRDNEE 269 Query: 451 VMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSV 508 ++L I+E D GI ++R G I + N ++ GY ++I+ + F+VF L+Q P Sbjct: 270 RLRL--IIEGVKDYGIFALDRNGYITTWNAGAERIKGYTEQEIIGQHFSVFYLQQECPQH 327 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEW 564 + L E +++ R T E K+ ++I S+ +S DIS+ Sbjct: 328 PDMALHEA-TVNGRYTEEGWR--QRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDR 384 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + + L A++ AE+ S KS+FL+R+SHE+RTPL +I+GF+++++ P I Sbjct: 385 RVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLEMD--SPASQRPQI 442 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +I R+G +L ++N++LDI++IE+G ++L EPVSL + EA+ LV A + I Sbjct: 443 ---GHILRAGQHLLKLINEVLDIARIEAGHVSLILEPVSLSSVLEEALVLVSPMAADANI 499 Query: 685 LIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ N+P ++AD + + Q+ LN+LSNAI + GQ+ I T+ E+V + V Sbjct: 500 ELKP--LPNLPDEIGVVADRQRLIQVLLNLLSNAIKYNRPAGQVRIEIEQTA-EQVTVSV 556 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG G+ + + KPF ++ + + EGTGLGL L+K+M++ G + +TP +G Sbjct: 557 VDTGYGIAPERIGQLFKPFERLDANPSV--EGTGLGLALSKSMLEMMHGTLSVQNTPDEG 614 Query: 802 TLIEIIFPLYDTSHP 816 + P P Sbjct: 615 CRFILALPFVRVQPP 629 >gi|153870226|ref|ZP_01999670.1| Signal transduction histidine kinase [Beggiatoa sp. PS] gi|152073308|gb|EDN70330.1| Signal transduction histidine kinase [Beggiatoa sp. PS] Length = 623 Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 91/256 (35%), Positives = 141/256 (55%), Gaps = 5/256 (1%) Query: 559 HDISEWKQE----KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 H ++E +E KN+ HA+++AE+ + KS FLA +SHE+RTPL AI+G+SE+++ + Sbjct: 99 HRVAERTEELLHAKNQAEHAQRLAEEANVTKSQFLANMSHELRTPLNAILGYSEILQEEA 158 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 LG I I +G +L+++ND+LDISKIE+GKM+L E L + E IS Sbjct: 159 -EELGQSECISDLQRIYSAGKHLLELINDVLDISKIEAGKMDLSLETFDLAIVIKEVISN 217 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 +Q +K ++ A+ + +L+DL ++Q+ LN+LSNA FT G I Sbjct: 218 IQPQVEKKANILEVKIADPLGTMLSDLTKLRQMLLNLLSNAAKFTEQGTISIEVKREQEE 277 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V D G+GMT + +K +PF Q S R GTGLGL + K + G + Sbjct: 278 TWFCFMVTDNGIGMTEEQQKKVFQPFTQADASTTRRFGGTGLGLAITKQFAEMMGGYILV 337 Query: 795 FSTPAKGTLIEIIFPL 810 S KG+ +++ P+ Sbjct: 338 NSEFGKGSTFKLLLPI 353 >gi|302184841|ref|ZP_07261514.1| PAS [Pseudomonas syringae pv. syringae 642] Length = 779 Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 131/440 (29%), Positives = 226/440 (51%), Gaps = 38/440 (8%) Query: 398 ARLHTIQWNREN-SLAMTFIPF----EKANQFPENMPQNG---IEPEDVDTRINKRKMEI 449 AR+H +Q N + +L +P ++ Q + + G +E E R N+ ++ + Sbjct: 215 ARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLVERERA-LRDNEERLRL 273 Query: 450 EVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPS 507 I+E D GI ++R G I + N ++ GY ++I+ + F+VF L+Q P Sbjct: 274 -------IIEGVKDYGIFALDRNGYITTWNAGAERIKGYTEQEIIGQHFSVFYLQQECPQ 326 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISE 563 + L E +++ R T E K+ ++I S +S DIS+ Sbjct: 327 HPDMALHEA-TVNGRYTEEGWR--QRKDGSRFWASVVITAQYDSHDELRGFSKITRDISD 383 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 + + L A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ P Sbjct: 384 RRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMD--SPASQRPQ 441 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 I +I R+G +L ++N++LDI++IE+G ++L EPVSL + EA+ LV A + Sbjct: 442 I---GHILRAGQHLLKLINEVLDIARIEAGHVSLVLEPVSLSSVLEEALVLVSPMAADAN 498 Query: 684 ILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 I ++ N+P ++AD + + Q+ LN+LSNAI + GQ+ I T+ E+V + Sbjct: 499 IELQP--LPNLPDEIGVVADRQRLIQVLLNLLSNAIKYNRPAGQVRIEIEQTA-EQVTVS 555 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG G+ + + KPF ++ + + EGTGLGL L+K+M++ G + +TP + Sbjct: 556 VVDTGYGIAPERIGQLFKPFERLDANPSV--EGTGLGLALSKSMLEMMHGTLSVQNTPDE 613 Query: 801 GTLIEIIFPLYDTSHPHDCI 820 G + PL P + Sbjct: 614 GCRFILALPLVRVQPPAAAL 633 >gi|66045179|ref|YP_235020.1| PAS [Pseudomonas syringae pv. syringae B728a] gi|63255886|gb|AAY36982.1| PAS [Pseudomonas syringae pv. syringae B728a] Length = 779 Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 132/434 (30%), Positives = 227/434 (52%), Gaps = 34/434 (7%) Query: 398 ARLHTIQWNREN-SLAMTFIPFEKANQFPEN--MPQNGIEPEDVDTRINKRKMEI----E 450 AR+H +Q N + +L +P Q PE + Q G + + +R+ + E Sbjct: 215 ARVHQVQRNAQRLALGHPLLP-----QPPEKDEIGQLGTRLVEAGQLLAERERALRDNEE 269 Query: 451 VMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSV 508 ++L I+E D GI ++R G I + N ++ GY ++I+ + F+VF L+Q P Sbjct: 270 RLRL--IIEGVKDYGIFALDRNGFITTWNAGAERIKGYTEQEIIGQHFSVFYLQQECPQH 327 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEW 564 + L E +++ R T E K+ ++I S+ +S DIS+ Sbjct: 328 PDMALHEA-TVNGRYTEEGWR--QRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDR 384 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + + L A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ P I Sbjct: 385 RVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMD--SPASQRPQI 442 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +I R+G +L ++N++LDI++IE+G ++L EPVSL + EA+ LV A + I Sbjct: 443 ---GHILRAGQHLLKLINEVLDIARIEAGHVSLILEPVSLSNVLEEALVLVSPMAADANI 499 Query: 685 LIR--TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 ++ S ++I ++AD + + Q+ LN+LSNAI + GQ+ I + E+V + V Sbjct: 500 ELKPLPSLPDDIG-VVADRQRLIQVLLNLLSNAIKYNRPAGQVRIEIEQIA-EQVTISVV 557 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG G+ + + KPF ++ + + EGTGLGL L+K+M++ G + +TP +G Sbjct: 558 DTGYGIAPERIGQLFKPFERLDANPSV--EGTGLGLALSKSMLEMMHGTLSVQNTPDEGC 615 Query: 803 LIEIIFPLYDTSHP 816 + PL P Sbjct: 616 RFILALPLVRVQPP 629 >gi|163792793|ref|ZP_02186770.1| histidine kinase response regulator hybrid protein [alpha proteobacterium BAL199] gi|159182498|gb|EDP67007.1| histidine kinase response regulator hybrid protein [alpha proteobacterium BAL199] Length = 417 Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 94/244 (38%), Positives = 149/244 (61%), Gaps = 7/244 (2%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 + L+ AK AE KS+FLA +SHE+RTPL A+IGF+++++ Q GP+ P+Y++ Sbjct: 169 SDLARAKMAAEMADRAKSEFLAHMSHELRTPLNAVIGFADMLRLQLHGPM-LPQYLDSVE 227 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I SG +LD++NDLLD+++IE+G + L EPV L +++ A+ + I +R Sbjct: 228 TISTSGRHLLDLINDLLDLARIEAGAIELQTEPVELAALAHATARMLEPLADGRGIGMRI 287 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 PR+ AD R+++Q+ +NI+ NAI F P +II+ T + + V +RVRD G GM Sbjct: 288 E-GRRGPRVQADRRAIQQVLINIIGNAIKFGPEDSEIIV--TFSDGDPVEIRVRDEGPGM 344 Query: 749 TNYELEKAMKPFGQI---PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 T ++E+AM+P+G+ P+ GTGLGLP+A +V+ + G+ I S P GT + Sbjct: 345 TMRQIERAMQPYGRTQIEPSHTSPSNGGTGLGLPIAHRLVELHNGRLRIDSAPGGGTTVV 404 Query: 806 IIFP 809 + P Sbjct: 405 VSLP 408 >gi|309790857|ref|ZP_07685401.1| PAS sensor protein [Oscillochloris trichoides DG6] gi|308227144|gb|EFO80828.1| PAS sensor protein [Oscillochloris trichoides DG6] Length = 899 Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 116/391 (29%), Positives = 193/391 (49%), Gaps = 49/391 (12%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + + E Q+ +IL+ +DG+ + + G +L N A G +ED+L N Sbjct: 525 RQQTEASQIEAILQNLADGVIVCDLYGSVLMANEAAGTTLGRTIEDLLL--------WNL 576 Query: 506 PSVMNHYL---------TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 ++N YL TE+L+ L ++ ST + + +R+I S+ Sbjct: 577 HDIINRYLGSRSPEMPLTELLARPLDALDQRRIFTSTAK---VGMRMI----------SM 623 Query: 557 TMHDI-SEWKQEKNKLSHAKKIA-EKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 TM + E Q L + I E E+ K++F+ +SHE+RTP+TAI GF++++ Sbjct: 624 TMGPVLKEDGQLLGALLVVRDITREIEADRLKTEFIGTMSHELRTPMTAIKGFTQLLAMG 683 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 GPL + + E+ N I + ++ ++ND+LDI+KIESG ++L + + L E +S IS Sbjct: 684 GLGPLNDTQR-EFVNTIHSNTERMIALINDVLDITKIESGSVDLEWRSLHLVEVLSGVIS 742 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 VQ + + + S +P + AD + QI N+LSNAI +TP GG+I + Sbjct: 743 EVQPAVSAREHELTISIPPGMPLVRADAHRLHQILFNLLSNAIKYTPKGGKISVEAYEAR 802 Query: 734 NEE---------------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 +E V + +RDTGVG+ E+ + F + N +I GTGLGL Sbjct: 803 ADELPDYLRSGVTAEKRYVQVNIRDTGVGIDREEIGRIFDRFYRTENPLKIEAGGTGLGL 862 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L K +V+ GK ++ ST +G+ ++ P Sbjct: 863 SLVKPLVELLNGKIWVESTVGQGSTFSLLLP 893 >gi|144897547|emb|CAM74411.1| Signal transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 530 Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 85/233 (36%), Positives = 138/233 (59%), Gaps = 2/233 (0%) Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 +AE S KS FLA +SHE+RTPL AIIGF+E+ ++Q G R + I S + Sbjct: 295 VAEASSRAKSTFLANMSHELRTPLNAIIGFAELAESQ-MGEAEKQRLGSFICDIGESAHH 353 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 +L +++D+LD++++E+GK+NLH + + E + A+ L K+ + TS +++PR Sbjct: 354 LLRVISDILDVARVEAGKINLHESLIFIPEVIQSAVRLTAPSVTAKQQTVLTSCPDDLPR 413 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 + D R +KQ+ LN+++NA FT + GQI I + V L + D G G+ ++ K Sbjct: 414 LKGDERLIKQVLLNLVANASKFTQNNGQITIR-AELVDGCVRLSIADNGCGIAPDDIAKV 472 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++PFGQ+ N + EGTGLGLPLA+ ++ + G + S +GT + + FP Sbjct: 473 LQPFGQVENLLAPKQEGTGLGLPLAREFMELHGGSLDVQSQLNQGTTVILTFP 525 >gi|144899289|emb|CAM76153.1| Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Magnetospirillum gryphiswaldense MSR-1] Length = 753 Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 82/234 (35%), Positives = 142/234 (60%), Gaps = 3/234 (1%) Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 ++AE + + KS FLA +SHE+RTPL A++GFSE++ +G + R E ++ + Sbjct: 517 QLAESDRA-KSRFLAHMSHELRTPLNAVLGFSEMLGMGIYGQVVQ-RQSEAIGHVRDAAR 574 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L+++ND+LD+SKIE+G ++ E + + + A L+ E + IR + +P Sbjct: 575 HLLNMINDVLDLSKIEAGGFDIEDEELEISALATYAQQLLSSLTREAEVTIRVEVPSALP 634 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 R+ AD R + QI +N+LSNAI FTP G + + ++ + L V DTG+G+ +L + Sbjct: 635 RLRADRRMLLQILINLLSNAIKFTPPQGSVHVGCREDAS-GLCLTVHDTGIGIAADQLAR 693 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++PF Q ++ +I +GTGLGLP+ K++V+ + G ++ ST +GT + + FP Sbjct: 694 VLEPFRQTEDNMEIARKGTGLGLPIVKSLVELHGGTIHLSSTLGQGTCVTLTFP 747 >gi|163794299|ref|ZP_02188271.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha proteobacterium BAL199] gi|159180467|gb|EDP64988.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha proteobacterium BAL199] Length = 637 Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 114/363 (31%), Positives = 193/363 (53%), Gaps = 18/363 (4%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL---RKPFTVFLEQNTPSVMNHYL 513 I++ SD + N G I + ++ G P + I+ R+ F + + P + Sbjct: 278 IIDIASDWVWETNAAGQITFVSDRFVEISGIPTDRIVGRTRRELP-FYDWDDPGL----- 331 Query: 514 TEILSLDLRQTL----EKITLGSTKEEKLLSLR---IIIKKLPFSSCYSLTMHDISEWKQ 566 + L DLR+ +I +G+ ++ +SLR I+ F Y T D++ + Sbjct: 332 -QALEEDLRERRPIHGRRIRIGTPSGDRQVSLRGRPILGDDGTFQG-YRGTGTDVTREHE 389 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 +L A A+ + KS FLA +SH++RTPL AI+GFSE+++ + FGP+G+PRY EY Sbjct: 390 YVQRLHDAMVEAQAANRAKSRFLANMSHDLRTPLNAIMGFSEIMQAEVFGPVGHPRYAEY 449 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + I S +L++++DLLD+++IESG++ + EP+ + + V EAI LV + + + Sbjct: 450 SRDIRTSAVHLLELIDDLLDLARIESGRIEMVKEPLVIRDIVDEAIMLVAPRCEARGVSL 509 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 + A + P + +D R+VKQI +N+L+NA FT GG I++ S V + V D G Sbjct: 510 TVTGAADAPVVHSDGRAVKQILVNLLTNASKFTERGGSIVVDIKPDSTGNVWVSVCDDGC 569 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +++ KPF Q + +G GLGL + +++ +A KF I S +GT + Sbjct: 570 GIPTAMIDEVTKPFVQASETASRPRDGVGLGLAIVRSLSEAIGAKFQIESRIGEGTTARV 629 Query: 807 IFP 809 P Sbjct: 630 RLP 632 >gi|172035081|ref|YP_001801582.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142] gi|171696535|gb|ACB49516.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142] Length = 453 Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 90/250 (36%), Positives = 142/250 (56%), Gaps = 7/250 (2%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 +W + NK+ K + S +KSD+ + VSHE+RTPL I+GFS++++ + +G L N + Sbjct: 190 QWLERINKIELENKKLKLSSHNKSDYFSHVSHELRTPLAGILGFSKMLREEIYGTL-NEK 248 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +Y N I SG +L +VND LD+SKIE+ K L E V++++ AIS+VQ ANE+ Sbjct: 249 QKQYVNGIRVSGEHLLALVNDFLDLSKIEANKEELFLETVAVEDICLAAISIVQPKANEQ 308 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR-- 740 + + + + + D R +KQI +N+LSNAI FT G T E +L Sbjct: 309 NLDLILNLSEQVDFCTVDQRKIKQILINLLSNAIKFTEKGS----VTLQVKKIESLLTFC 364 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+G+ + +K +PF QI ++ + +GTGLGL L++ + + G + S K Sbjct: 365 VIDTGIGIKEEDQQKLFQPFQQIHSNLNRKHKGTGLGLALSRKLAQLHQGNLTLTSEYGK 424 Query: 801 GTLIEIIFPL 810 G+ + PL Sbjct: 425 GSCFTLELPL 434 >gi|170738618|ref|YP_001767273.1| multi-sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] gi|168192892|gb|ACA14839.1| multi-sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] Length = 764 Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 83/235 (35%), Positives = 141/235 (60%), Gaps = 2/235 (0%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K AE + KS+FLA +SHE+RTPL AI+GF+EV++++ FG LG +Y EY I SG Sbjct: 510 KAQAESANRSKSEFLANMSHELRTPLNAILGFAEVMQDEVFGHLGCEKYREYCRDIRSSG 569 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L +++D+LD+S+IE+ ++ L +P+ + E + + +V A K + + N Sbjct: 570 QYLLSVIDDILDMSRIEARRVTLAKQPLPVAEVLERVLKVVAEAARAKGLTLSVEM-NAD 628 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 +LAD R++ QI LN+L NA+ FTP G++ + T + + V + V D+G+G+ L Sbjct: 629 AVVLADARALHQILLNLLQNAVKFTPDAGRVAVR-TRRALDAVHIYVEDSGIGIPRTVLP 687 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K PF Q+ ++ +G+GLGL +A+++ + + G+ I S GT++ + P Sbjct: 688 KLGAPFEQVESNLSRSFKGSGLGLAIARSLTELHGGRLRIRSEVGSGTIVLVRLP 742 >gi|288962184|ref|YP_003452479.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288914450|dbj|BAI75935.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 882 Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 137/236 (58%), Gaps = 1/236 (0%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A++ AE + K +FLA +SHE+RTPL A+IGF+++I + GP+G P Y +YA + S Sbjct: 350 ARQAAEAANHAKGEFLAGLSHELRTPLNAVIGFADLIAREAEGPVGTPSYRQYAANVRDS 409 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G VL+++N++LD ++ E+G + + L+ A A+ ++ A +L+ + Sbjct: 410 GQHVLELINEILDHARAEAGALTIEEGRCDLEAAADFAVRMLTPRAERAGVLLTAAVMPA 469 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 + D R ++QI LN++ N + +TPSGG + +S VI RV DTG+G+ ++ Sbjct: 470 ARMLRGDDRRIRQILLNLIGNGVKYTPSGGSVTLSVLLEEGVPVI-RVTDTGLGIPAGDV 528 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ ++PF ++ ++ EG GLGLPL + +V+ + G + ST GT + + P Sbjct: 529 DRVLEPFARVESAANRAVEGAGLGLPLTRRLVELHGGVLTLRSTLGVGTTVTVRLP 584 >gi|163794214|ref|ZP_02188186.1| hypothetical protein BAL199_21144 [alpha proteobacterium BAL199] gi|159180382|gb|EDP64903.1| hypothetical protein BAL199_21144 [alpha proteobacterium BAL199] Length = 517 Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 94/247 (38%), Positives = 144/247 (58%), Gaps = 10/247 (4%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK AE ++ K+ FL +SHE+RTPL AIIGF+++++ GP+ +PRY+E+ + I Sbjct: 254 LERAKLRAELANTSKTQFLRSMSHELRTPLNAIIGFADLMRTGILGPMEHPRYLEFTHDI 313 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--RILIRT 688 SG +L I++DLLDI++IE G+ L E V LD VS+ V A E+ + I Sbjct: 314 HDSGRHLLKIIDDLLDIARIEVGQETLREEAVDLDALVSDCHRTVGPMAIERGLSLHIDA 373 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT------SNEEVILRVR 742 + + RI D +KQ+ LN+LSNAI TP GG++ + + S +V LRV Sbjct: 374 TAPGLVLRI--DRTKIKQVLLNLLSNAIKNTPRGGRVSSAVERSPTDGAGSTGDVELRVT 431 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG GMT ++ A+ F ++ + + +GTGLGLPL++ MV+ + G + S +GT Sbjct: 432 DTGRGMTAEQIPMALTAFTRLDDDPMLPQKGTGLGLPLSRMMVELHGGALTLESEIGRGT 491 Query: 803 LIEIIFP 809 + + P Sbjct: 492 QVTVRLP 498 >gi|94263692|ref|ZP_01287500.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93455891|gb|EAT06050.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 605 Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 107/389 (27%), Positives = 203/389 (52%), Gaps = 12/389 (3%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 ++ ++ +E +L IL+ T +G ++ E +LS N+A ++FGY E++L + + Sbjct: 133 KLARQALEEREKRLALILDNTVEGFITMDAERQVLSFNKAAERIFGYEAEEVLGQNLKML 192 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSS--CYSL 556 + + S + Y+ L+ +++ + + G K ++ L++ + + + Sbjct: 193 MPEPFHSQHDQYVENYLTSGVKKIIGTGREVQGRRKTGEVFPLQLAVSETLVGEERLFVG 252 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRF 615 ++ DI+E K+++ AK+ AE S KS+FLA +SHE+RTP+ IIG ++ +K++ Sbjct: 253 SIQDITERKRQEALQRQAKETAEAASRSKSEFLANMSHEMRTPMNVIIGLGQLALKSE-- 310 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P P+ +Y I S +L ++ND LD++++E+GKM + P L + +++ L+ Sbjct: 311 -PPPPPKLHDYLEKITASATTLLVLINDTLDLARLETGKMAIDQVPFDLSDILNKLEKLM 369 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS 733 A EK + + + A +P +++ D + Q+ +N+ SNAI F+ G + ++ Sbjct: 370 GERAAEKGLQLVFAVAPTVPDQMVGDPHRLSQVLINLTSNAIKFSEKGEVSLSFEMADST 429 Query: 734 NEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + LRV RDTG+G+ +LE +PF Q S + GTGLGL +A +V+ GK Sbjct: 430 ADTFTLRVTVRDTGIGIAPEQLETIFQPFTQADGSSTRKYGGTGLGLSIANRLVELMGGK 489 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 + S P +G+ PL ++ I Sbjct: 490 LEVKSEPGQGSSFFFNCPLRRSAQRKAII 518 >gi|330897590|gb|EGH29009.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 761 Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 132/435 (30%), Positives = 226/435 (51%), Gaps = 36/435 (8%) Query: 398 ARLHTIQWNREN-SLAMTFIPFEKANQFPEN--MPQNGIEPEDVDTRINKRKMEI----E 450 AR+H +Q N + +L +P Q PE + Q G + + +R+ + E Sbjct: 197 ARVHQVQRNAQRLALGHPLLP-----QPPEKDEIGQLGTRLVEAGQLLAERERALRDNEE 251 Query: 451 VMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSV 508 ++L I+E D GI ++R G I + N ++ GY ++I+ + F+VF L+Q P Sbjct: 252 RLRL--IIEGVKDYGIFALDRNGYITTWNAGAERIKGYTEQEIIGQHFSVFYLQQECPQH 309 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEW 564 + L E +++ R T E K+ ++I S+ +S DIS+ Sbjct: 310 PDMALHEA-TVNGRYTEEGWR--QRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDR 366 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + + L A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ P I Sbjct: 367 RVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMD--SPASQRPQI 424 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +I R+G +L ++N++LDI++IE+G ++L EPVSL + EA+ LV A + I Sbjct: 425 ---GHILRAGQHLLKLINEVLDIARIEAGHVSLILEPVSLSSVLEEALVLVSPMAADANI 481 Query: 685 LIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ N+P ++AD + + Q+ LN+LSNAI + GQ+ I T+ E+V + V Sbjct: 482 ELKP--LPNLPDEIGVVADRQRLIQVLLNLLSNAIKYNRPAGQVRIEIEQTA-EQVTVSV 538 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG G+ + + KPF ++ + + EGTGLGL L+K+M++ G + +TP +G Sbjct: 539 VDTGYGIAPERIGQLFKPFERLDANPSV--EGTGLGLALSKSMLEMMHGTLSVQNTPDEG 596 Query: 802 TLIEIIFPLYDTSHP 816 + P P Sbjct: 597 CRFILALPFVRVQPP 611 >gi|254445718|ref|ZP_05059194.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198260026|gb|EDY84334.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 1149 Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 130/487 (26%), Positives = 229/487 (47%), Gaps = 38/487 (7%) Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY---RS 389 V G+ Y N SF + Y+++D + GG+ L KL + ++ + Y + Sbjct: 382 LMVNRDGDALYRNNSFTNIVGYQTIDLLNEKGGVKALF-GEKLVYDKILQETLEYGHWQG 440 Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 D + S R I F + E + + D NKR+ + Sbjct: 441 DVQVMTESGRQLDIY-------------FRSVSVKDEKGRVSALVVTGTDVTHNKRRQNL 487 Query: 450 EVMQLCSIL----EATSDGIAIINREGIILSTNRAVSKLFGYPVE--DILR--KPFTVFL 501 + + S+L EA +DGI ++N GI+ + NR K++G D+ R K + V Sbjct: 488 -LKRYNSVLKAQSEAATDGILVVNERGIVSNFNRRFCKIWGLSTNLMDVGRPEKIWNVAS 546 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MH 559 +Q S +S D +T + + ++ + I P Y H Sbjct: 547 KQVADSEAFFERAMKISEDETETFKDVL--DFEDGRTFERTSIPISSPLGESYGRVWFFH 604 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +++E K+ + +L + AE+ + KS FLA +SHEIRTP+ IIG + ++ L Sbjct: 605 EVTEQKRSEERLRATMREAEEANRAKSYFLANMSHEIRTPMNGIIGMTGLLSET---TLE 661 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N ++ +Y + I S +L ++ND+LD SKIESGK+ + L + + EAI + + A Sbjct: 662 NEQH-DYVDTIRASSEALLVVINDILDFSKIESGKLEIENIMFDLRDCMEEAIDTLAIQA 720 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEV 737 EK + + F +P +L D ++Q+ +N++ NA+ FT GG ++ + H +++V Sbjct: 721 TEKGLDVSYVFGKEVPGSLLGDPTRLRQVIVNLIGNAVKFTAKGGVVVRVDPFHIKDDDV 780 Query: 738 IL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 IL +V DTG+G+ +++ F Q+ S + GTGLGL ++K +V+ G ++ Sbjct: 781 ILHFKVTDTGIGIPADRIDRLFGSFSQVDASTTRKYGGTGLGLAISKNLVELMGGSMWVE 840 Query: 796 STPAKGT 802 S +G+ Sbjct: 841 SEDGEGS 847 >gi|83646440|ref|YP_434875.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83634483|gb|ABC30450.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 418 Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 95/259 (36%), Positives = 152/259 (58%), Gaps = 5/259 (1%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E K+ + +L + + +K +FL+ +SHE+RTPL AI+G+SEV+ + G L NP+ Sbjct: 159 ELKRSQQQLREQNRQLGMSNQYKINFLSSMSHELRTPLNAILGYSEVLLDGMMGEL-NPK 217 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +EY I SG+ +L I+NDLLD+SKIE+GK+ L +P ++ V+ I +++ A+ Sbjct: 218 QLEYCKEIYDSGSYLLIIINDLLDLSKIEAGKLELEIQPTHIEILVNSVIGIIKEKASRH 277 Query: 683 RILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 I++ T +I P L LR VKQI +N+LSNAI FT SG Q+ + + ++E++++V Sbjct: 278 GIILLTDIQEDIGPAELDPLR-VKQILINLLSNAIKFTDSGKQVGLKVSLHDDQELLIQV 336 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRG-EGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 D G G++ +L++ PF Q +S + + EGTGLGL L +V + G + S + Sbjct: 337 FDQGCGVSEQDLQRIFLPFEQAESSIKKKNVEGTGLGLALVHKLVLLHGGSIDVKSELGQ 396 Query: 801 GTLIEIIFPLYDTSHPHDC 819 G+ I P Y S C Sbjct: 397 GSSFFIRLP-YRASAGGSC 414 >gi|144898582|emb|CAM75446.1| Signal transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 822 Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 106/360 (29%), Positives = 190/360 (52%), Gaps = 16/360 (4%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEI 516 LE + + I + G++ N A K GY ++DI+ ++P + + +P+ + T I Sbjct: 322 LEYSGSMVLITDAHGLMEYVNPAFVKATGYDLDDIIGKRPSMLRHPELSPAATGLWST-I 380 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH------DISEWKQEKNK 570 L+ ++ + K+ L + I P + + H D + + + + Sbjct: 381 LAC---RSWTGMFCNQRKDGTPLWVSATIS--PVTDDSGVITHFVAVEEDATSRRDGEEE 435 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK++AE S KS+FL+ +SHE+RTP+ AI+GF++++ N LG R YA+ I Sbjct: 436 LREAKRMAEAASLAKSEFLSSMSHELRTPMNAILGFAQLLTNADNDSLGE-RQRFYADSI 494 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRTS 689 +SGN +L +VND+LD+++IE+G+++L FE V D+ ++E I ++ A +++ LI Sbjct: 495 LKSGNHLLSLVNDILDMARIEAGRLSLSFERVEPDQVMAEIIPMIAATAERRKVTLIDEI 554 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 P + AD +KQ +N+ SNA+ + +GG + S +H V + V DTG+G+ Sbjct: 555 SGRGAPAVEADFTRLKQALINLASNAVKYNRTGGTVRFSISHGETGPVRIAVSDTGIGIP 614 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + +PF ++ ++ EGTG+GL + K +V+A G+ F+ GT + P Sbjct: 615 EKRRTEVFQPFARL-GAEASTVEGTGIGLTITKMLVEAMGGQIGFFTQENLGTTFWLEIP 673 >gi|220920746|ref|YP_002496047.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium nodulans ORS 2060] gi|219945352|gb|ACL55744.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium nodulans ORS 2060] Length = 605 Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 93/266 (34%), Positives = 151/266 (56%), Gaps = 3/266 (1%) Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 +P + D+SE + +L A+ AE+ + KS FLA VSHE+RTPL AIIGF Sbjct: 310 AVPGQAAVVAVTRDVSEHHRHAAELDRARAEAERADAVKSRFLAVVSHELRTPLNAIIGF 369 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 SE++ + L R EYA I SG +L++VN LLD+++I+SG + EP + Sbjct: 370 SEMLSAEAGLTLPVERQREYAVIIQSSGRHLLEVVNALLDLTRIQSGSFDFAPEPFDIRA 429 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 V+ L+QL A++ + + ++P + AD R+ +Q+ +N+LSNA+ FTP GG++ Sbjct: 430 VVNGCCDLMQLRADQVGVELLRDVPRDLPELTADPRACRQMLINLLSNAVKFTPRGGRVT 489 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG--EGTGLGLPLAKAM 784 +S + + + L V DTG+G+ +L + PF Q ++ EGTGLGL + + + Sbjct: 490 VSVRQ-AYDRIELSVTDTGIGIAEADLPRLGDPFFQAGDAAAYARMHEGTGLGLSVVRGL 548 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810 V + G+ + S+ A+GT + + PL Sbjct: 549 VGLHDGEMTLESSVARGTRVVVALPL 574 >gi|83311067|ref|YP_421331.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82945908|dbj|BAE50772.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 535 Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 90/225 (40%), Positives = 133/225 (59%), Gaps = 2/225 (0%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K+ FLA +SHE+RTPL AIIGFSE + N G RY + + I S + +L +++D+ Sbjct: 306 KTIFLANMSHELRTPLNAIIGFSE-LANSIMGKADMDRYGGFLDNISESAHHLLRVISDI 364 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+S++E GK+ L V + EAV A+ LV + KR + S + +P I AD R + Sbjct: 365 LDVSRVEVGKVILRESVVDVAEAVRAAMRLVSHVVSNKRQSLTFSPQDGLPLIRADERLM 424 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 KQI LN+LSNA FTP G I ++ + + V + V D GVG+ ++ ++PFGQ Sbjct: 425 KQIVLNLLSNAAKFTPESGNIRVA-ANLVDGCVTVEVEDDGVGIAAEDIAMVLQPFGQAE 483 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 N+ + EGTGLGLPLAK ++ + G + S +GT + + FP Sbjct: 484 NAISPKHEGTGLGLPLAKGFMELHGGSLTLESRVGEGTKVMLTFP 528 >gi|327542393|gb|EGF28876.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47] Length = 993 Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 115/378 (30%), Positives = 192/378 (50%), Gaps = 47/378 (12%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF----------------L 501 L+ + G+ ++N +G IL TNR +++L D++ K Sbjct: 189 LDTITVGLVLLNSKGRILFTNRRLNQLLSQESADLMGKKIDDLEWQMIADTGAVLPWEEA 248 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561 +QN SVM+ IL D ++L+ + + Y +T DI Sbjct: 249 KQNDDSVMDR----ILQFD-------------NNGRMLTFSVNCTPIA-GQGYLVTFEDI 290 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 + ++ K L+ A+ AE ++ KSDFLA +SHEIRTPL A++GF++V+ R G + N Sbjct: 291 TLIEENKVALAKARDAAENANAAKSDFLANMSHEIRTPLNAVLGFTDVL---RRGLVSNG 347 Query: 622 -RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 +++ N I RSG +L+++ND+LD+SKIESG + SLD+ V++ + +++ A+ Sbjct: 348 DEAVDHLNMIHRSGAHLLELINDILDLSKIESGHLQTETIDTSLDDIVTDVANTLKVKAD 407 Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV- 737 E+ + ++ F IPR I +D ++Q+ N++ NAI FT SG I+ S T + + Sbjct: 408 EQNLALKVDFRTAIPRTIQSDPTRLRQVVTNLVGNAIKFTESGSVSIVTSLLKTPSNALE 467 Query: 738 ----ILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 I+RV DTG+GMT + K F Q +S + GTGLGL +++ + +A G Sbjct: 468 GYDPIIRVDIIDTGIGMTPDQQAKIFDSFVQADSSTTRKFGGTGLGLSISRRLAEAMGGS 527 Query: 792 FYIFSTPAKGTLIEIIFP 809 + S G+ + P Sbjct: 528 LTVHSEVGIGSTFRVELP 545 >gi|254417240|ref|ZP_05030985.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196176046|gb|EDX71065.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1359 Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 91/252 (36%), Positives = 152/252 (60%), Gaps = 11/252 (4%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI++ K + +L AK+ AE + KSDFLA +SHEIRTP+ A+IG + ++ + + Sbjct: 699 TITDITDKKIAQEQLKAAKEEAETANRTKSDFLAMMSHEIRTPMNAVIGMTSLLLDTQL- 757 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + E+ + I S + +L I+ND+LD SKIESGK+NL +P L + E++ L+ Sbjct: 758 ---TAQQGEFVDIIRNSSDALLTIINDILDFSKIESGKLNLEEQPFDLRACIEESLELLS 814 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--- 732 A +K I + + IP I+ D+ ++QI +N++SNA+ FT + G ++IS T T Sbjct: 815 SKARDKGIELAYLMDSQIPESIVGDVTRLRQILVNLVSNAVKFTET-GDVVISVTPTAEI 873 Query: 733 SNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 S E++ L+ VRDTG+G++ +++ KPF Q+ S + GTGLGL +++ + + G Sbjct: 874 SEEQIRLQFAVRDTGIGISRTRMDRLFKPFSQVDASTTRQYGGTGLGLAISQRLSELMGG 933 Query: 791 KFYIFSTPAKGT 802 K ++ S G+ Sbjct: 934 KMWVESEEGVGS 945 >gi|309791477|ref|ZP_07685981.1| PAS fold family protein [Oscillochloris trichoides DG6] gi|308226474|gb|EFO80198.1| PAS fold family protein [Oscillochloris trichoides DG6] Length = 1306 Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 121/380 (31%), Positives = 192/380 (50%), Gaps = 33/380 (8%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED--------ILRKPFTVFLEQN 504 Q+ ILE+ +D ++ N+ +L G P E I KP V +E N Sbjct: 535 QISRILESITDAFFAVDSNWRFTYVNQESERLLGKPREQLIGQDFWSIFPKPLGVDMEPN 594 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 + Y +L + TL+ T + + E+ +R P ++ + DI+ Sbjct: 595 -----HRY-----ALKTQTTLQFETY-TPQYERWFEVR----DYPSPDGLAIYLRDITAQ 639 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K +L AK+ AE + KSDFLA +SHEIRTP+ A+IG + ++ + PL N Sbjct: 640 KHTHMELVEAKEAAEAATRAKSDFLATMSHEIRTPMNAVIGMTGLLLDT---PL-NAEQR 695 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 ++ I SG+ +L I+ND+LD SKIESGK L +P L + + A+ LV A EK+I Sbjct: 696 DFVETIRNSGDALLTIINDILDFSKIESGKFELEQQPFDLRDCLEAALDLVSARAAEKQI 755 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILR 740 + A N+P+ I D+ V+QI +N+L+NA+ FTP+G +++ + EV + Sbjct: 756 DLAYMIARNVPQAIEGDVTRVRQILVNLLANAVKFTPAGEVVVMIEGRRIRDQLFEVHIA 815 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 VRDTG+G+ L + K F Q+ S + GTGLGL +++ + G+ ++ ST Sbjct: 816 VRDTGIGIPADRLNRLFKAFSQVDASTTRQYGGTGLGLAISQRLCALMGGRMWVESTVGV 875 Query: 801 GTLIE--IIFPLYDTSHPHD 818 G+ II P ++ HD Sbjct: 876 GSTFHFTIIAPAAESPQRHD 895 >gi|308050680|ref|YP_003914246.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799] gi|307632870|gb|ADN77172.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799] Length = 1756 Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 115/387 (29%), Positives = 192/387 (49%), Gaps = 25/387 (6%) Query: 442 INKRK-MEIEVMQLCSILEATSD--GIAII--NREGIILSTNRAVSKLFGYPVEDILRKP 496 I++RK ME +++ + A D GIAI+ N+ G+I N + E ++ + Sbjct: 888 ISQRKAMEQQLVNSEAHFRALFDNAGIAIVTLNKLGVIGEANERFQQFAELEPEQLIGQH 947 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL----GSTKEEKLLSLRIIIKKLPFS- 551 + L N L +L+ + R +++ GS + + + +++K Sbjct: 948 ISQLLPAEDRDSFNQSLAPLLAGEQRHLAQEMRYRKPDGSLRWADMRA--VVLKDYQGGL 1005 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 S LTM D++E +Q L AK+ A+ S K+DFLA +SHEIRTP+ AIIG +++ Sbjct: 1006 SALVLTMSDVTERRQINEALRQAKEAADAASKAKTDFLANMSHEIRTPMNAIIGMTQLCL 1065 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 PR +Y ID + +L I+ND+LD SKIE+G++ L EP +LDE + + Sbjct: 1066 QTDL----PPRQADYLRKIDSASQSLLGIINDVLDYSKIEAGRLELEQEPFALDELLEQL 1121 Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII---- 726 L + A EK + + + +P R+ D+ + QI +N+LSNAI FT G ++ Sbjct: 1122 SDLFAVRAKEKGVELLFAVEPEVPARLNGDMLRLGQILINLLSNAIKFTDHGEVVLAIRQ 1181 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + + VRDTG+GM+ + + + F Q +S + GTGLGL +++ +V Sbjct: 1182 LDGAPPGQTRLTFSVRDTGIGMSPEQQARLFQSFSQADSSTTRKYGGTGLGLAISQRLVS 1241 Query: 787 ANMGKFYIFSTPAKGTL----IEIIFP 809 G+ + S G+ IE+ P Sbjct: 1242 LMGGQIQVNSAAGAGSTFHFSIELALP 1268 >gi|126659637|ref|ZP_01730767.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] gi|126619083|gb|EAZ89822.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] Length = 1070 Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 113/365 (30%), Positives = 197/365 (53%), Gaps = 21/365 (5%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 + IL+ ++ I I+ + I N A ++FGY +++L +PF + + P + + Sbjct: 466 RFAGILDNANEAIISIDEQQKITLFNHAAEQIFGYISDEVLGQPFNLLI---PPRFTDDH 522 Query: 513 LTEILSL-DLRQTLEKI-----TLGSTKE--EKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 I + + +T ++ G K+ E L + I KL + ++ + DI+E Sbjct: 523 YQHIQTFQNTSETARQMGGRRPVFGQRKDGTEFLAEVSISKIKLRGKTIFTAIIRDITER 582 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 KQ + L AK+ A+ + KS+FLA +SHE+RTPL AI+GF++V+ QR L + Sbjct: 583 KQAEEALKRAKEQADAANRAKSEFLASMSHELRTPLNAILGFTQVM--QRDHSL-KEEHK 639 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + + I RSG +L+++ND+L+++KIE+G+ L+ L + S++ L A EK + Sbjct: 640 QNLDIIGRSGEHLLELINDILEMTKIEAGRTTLNKTQFDLYRLLDNLESMLHLKAEEKNL 699 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTS--NEEVIL- 739 + ++P+ I D ++Q+ +N+L NAI FT GG I+ I T+ S N+ +IL Sbjct: 700 QLLFEKNPDLPQYIETDEGKLRQVLINLLGNAIKFTQEGGVILRIKTSQQSPNNQAIILT 759 Query: 740 -RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG G+ E+++ + FGQ + EGTGLGLP+++ V+ G+ + S Sbjct: 760 FEVEDTGPGIAIEEVDQLFEAFGQTETGRN-SNEGTGLGLPISRKFVELMGGEISVSSIL 818 Query: 799 AKGTL 803 +G+L Sbjct: 819 GRGSL 823 >gi|163793169|ref|ZP_02187145.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha proteobacterium BAL199] gi|159181815|gb|EDP66327.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha proteobacterium BAL199] Length = 430 Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 81/244 (33%), Positives = 137/244 (56%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 LS ++ AE K + A + HE+RTPL AIIGF++ + + +GPLGNPRY +YA I Sbjct: 179 LSAVREGAEMAERLKRESFANLGHELRTPLNAIIGFAQSLDAELWGPLGNPRYRDYAKAI 238 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG + ++ D+LD+S+ ++G + L V + AV ++ A + + T+ Sbjct: 239 ADSGQHLYVLIQDILDLSRHDAGILELDETTVDVAAAVRTCRKMLGGSAASNGVSLATTV 298 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + + D ++QI +N+ +NAI FTP+GG++ I+ + E LRV DTG+G+ Sbjct: 299 PDEGLWVTGDSTKLRQIVINLAANAIRFTPAGGRVTIAACRLESGETELRVEDTGIGLDP 358 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 ++ +A++PF Q+ + G GLGLPL+K + + + G I S GT++ I+ P Sbjct: 359 EDIPRALEPFVQVSRDRARESGGAGLGLPLSKRLTELHGGVLEIHSRRGTGTVVRIVLPA 418 Query: 811 YDTS 814 + + Sbjct: 419 WRAA 422 >gi|126658520|ref|ZP_01729668.1| sensory transduction histidine kinase [Cyanothece sp. CCY0110] gi|126620262|gb|EAZ90983.1| sensory transduction histidine kinase [Cyanothece sp. CCY0110] Length = 400 Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/231 (37%), Positives = 135/231 (58%), Gaps = 7/231 (3%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S HKSD+L+ VSHE+RTPL I+GFS++++ + +G L N + +Y N I SG +L +V Sbjct: 170 SDHKSDYLSHVSHELRTPLAGILGFSKMLREEIYGTL-NDKQKQYVNGIRISGEHLLALV 228 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 ND LD+SKIE+ K L E V++++ AIS+VQ A+E+ + + ++ + D Sbjct: 229 NDFLDLSKIEANKEELFLETVAVEDICLAAISMVQPKADEQNLNLLLKLSDQVDFCKVDQ 288 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKP 759 R +KQI +N+LSNAI FT G T + +L V DTG+G+ + +K +P Sbjct: 289 RKIKQILINLLSNAIKFTEKGS----VTLEVDKIDCLLTFCVVDTGIGIKEEDQQKLFQP 344 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F QI ++ + +GTGLGL L+K + + G + S KG+ + PL Sbjct: 345 FQQIHSNLSRKHKGTGLGLALSKKLAQLHQGDLTLQSEYGKGSCFTLELPL 395 >gi|159897671|ref|YP_001543918.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159890710|gb|ABX03790.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 631 Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 114/369 (30%), Positives = 193/369 (52%), Gaps = 24/369 (6%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVE----DILRKPFTVFLEQNTPSVMNH 511 +I E T GI I +G +L N A+ +L G+ E D + T+++E P Sbjct: 265 TIFETTKIGIFRITPDGRVLRANPALVRLAGFAHEHELVDYVADLTTMYVE---PQRFE- 320 Query: 512 YLTEILSLD--LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL-----TMHDISEW 564 YL E+L + + ++ +T E +S +L ++ S+ T+ +I+ Sbjct: 321 YLRELLQTNGSYDEIESEVYRPATGERIWISE---TSRLVYAEDGSMLYAEGTIQEITAR 377 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 KQ + L HA+ AE + KS FLA +SHE+RTPL AIIG+SE++ + +P + Sbjct: 378 KQVEEALRHARDAAEAANHAKSTFLANMSHELRTPLNAIIGYSELLMDDT--DFDDPTMV 435 Query: 625 EYANY----IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 E + I+ +G+ +L++VND+LD++K+E+GK + E L+ V + I+ + A Sbjct: 436 EQFRHDIAQINDAGHQLLNLVNDVLDLAKVEAGKYQVAAETFDLNSLVRDLIATINPMAQ 495 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + + ++P I D ++QI LN+LSNA FT +G I + +++ V R Sbjct: 496 KNANSLYFEPNKHLPLIHTDRSMLRQILLNLLSNAAKFTKAGSINISVSFDPASQHVQCR 555 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 VRDTG+GM + ++++ +PF Q S R GTGLGL L + ++ G + S + Sbjct: 556 VRDTGIGMNDEQMQRLFEPFTQGDASTTRRYGGTGLGLALCRHFIELLNGSIQVESVFGQ 615 Query: 801 GTLIEIIFP 809 G++ I+FP Sbjct: 616 GSIFTIVFP 624 >gi|94264869|ref|ZP_01288644.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93454690|gb|EAT04955.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 605 Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 103/371 (27%), Positives = 200/371 (53%), Gaps = 12/371 (3%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 ++ ++ +E +L IL+ T +G I+ E +LS N++ K+FGY +++L + + Sbjct: 133 KLARQALEEREKRLALILDNTVEGFITIDTERRVLSFNKSAEKIFGYRADEVLGRNVKML 192 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSS--CYSL 556 + S + Y++ L+ +++ + + G K ++ L++ + + + Sbjct: 193 MPDPYHSGHDQYVSNYLTSGVKKIIGIGREVQGRRKTGEIFPLQLAVSETLVGEERLFVG 252 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRF 615 ++ DI+E K+++ AK+ AE + KS+FLA +SHE+RTP+ IIG ++ +K++ Sbjct: 253 SIQDITERKRQEALQRQAKEAAEAANRSKSEFLANMSHEMRTPMNVIIGLGQLALKSE-- 310 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P P+ +Y I S +L ++ND LD++++E+GKM + P L + +++ L+ Sbjct: 311 -PPPPPKLHDYLEKITASATTLLVLINDTLDLARLETGKMAIDQIPFDLSDILNKLEKLM 369 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS 733 A EK + + + A +P +++ D + Q+ +N+ SNAI F+ G + ++ Sbjct: 370 GQRAAEKGLQLVFAVAPTVPDQMVGDPHRLSQVLINLTSNAIKFSDKGEVSLNFEMADST 429 Query: 734 NEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + LRV RDTG+G+ +LE ++PF Q S + +GTGLGL +A +V GK Sbjct: 430 ADTLTLRVTVRDTGIGIAPEQLETILQPFTQADGSSTRKYDGTGLGLSIANRLVQLMGGK 489 Query: 792 FYIFSTPAKGT 802 + S P +G+ Sbjct: 490 LEVESEPGQGS 500 >gi|291568305|dbj|BAI90577.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 358 Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 82/232 (35%), Positives = 139/232 (59%), Gaps = 8/232 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +FLA +SHE+RTPL AI+G +E ++ + FGP+ N R ++ ++RS + +L ++ND+ Sbjct: 109 KDEFLANMSHELRTPLNAILGMTEGLQEEVFGPV-NDRQLKALQTVERSASHLLALINDI 167 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD++KIESG++ L P ++ +I+ ++ A +KRI + + +P I+ D R + Sbjct: 168 LDVAKIESGQVELECSPTAIAPLCKSSIAFIKQQALKKRIQLSVNLPLKLPDIILDERRI 227 Query: 705 KQIALNILSNAIHFTPSGGQIIISTT-----HTSNEEVILR--VRDTGVGMTNYELEKAM 757 +Q+ +N+L+NA+ FTP GG I + E LR VRDTG+G++ ++K Sbjct: 228 RQVLINLLNNAVKFTPEGGSITLEVILPQPREAEGESPYLRFSVRDTGIGISPENIKKLF 287 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +PF QI ++ + +GTGLGL L K +V+ + G+ + S G+ I P Sbjct: 288 QPFMQIDSALNRQYQGTGLGLALTKQIVELHGGRVGLTSEVLLGSCFSIDLP 339 >gi|255615580|ref|XP_002539686.1| sensory transduction histidine kinase, putative [Ricinus communis] gi|223503534|gb|EEF22698.1| sensory transduction histidine kinase, putative [Ricinus communis] Length = 217 Score = 153 bits (387), Expect = 1e-34, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 124/206 (60%), Gaps = 4/206 (1%) Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 N+ FGPLG+ RY Y+ I SG +L ++ND+LD+SKIE+GKM L FEP+ L++ +A Sbjct: 3 NEMFGPLGDQRYKGYSLDIHNSGQHLLALINDILDMSKIEAGKMALKFEPLHLEDVTEDA 62 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + LV+ A + + F +P I AD R+VKQ+ LN+LSNAI FTP G++++ Sbjct: 63 VRLVRNRAEAAGLKLEVDFP-PLPEIEADYRAVKQVLLNLLSNAIKFTPRQGRVVVRAEI 121 Query: 732 TSN---EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + E V + V DTG+G+ +L + +PF Q+ + +GTGLGL L K++V+ + Sbjct: 122 RRDPLGERVKVSVTDTGIGIAAEDLARLARPFEQVESQHSKTTQGTGLGLALTKSLVEMH 181 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTS 814 G + STP GT + P+ +S Sbjct: 182 DGALEMVSTPGDGTTVSFTLPISQSS 207 >gi|32470753|ref|NP_863746.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32442898|emb|CAD71417.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 993 Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 115/378 (30%), Positives = 192/378 (50%), Gaps = 47/378 (12%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF----------------L 501 L+ + G+ ++N +G IL TNR +++L D++ K Sbjct: 189 LDTITVGLVLLNSKGRILFTNRRLNQLLSQESADLMGKKIDDLEWQMIADTGAVLPWEEA 248 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561 +QN SVM+ IL D ++L+ + + Y +T DI Sbjct: 249 KQNDDSVMDR----ILQFD-------------NNGRMLTFSVNCTPIA-GQGYLVTFEDI 290 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 + ++ K L+ A+ AE ++ KSDFLA +SHEIRTPL A++GF++V+ R G + N Sbjct: 291 TLIEENKVALAKARDAAENANAAKSDFLANMSHEIRTPLNAVLGFTDVL---RRGLVSNG 347 Query: 622 -RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 +++ N I RSG +L+++ND+LD+SKIESG + SLD+ V++ + +++ A+ Sbjct: 348 DEAVDHLNMIHRSGAHLLELINDILDLSKIESGHLQTETIDTSLDDIVTDVANTLKVKAD 407 Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV- 737 E+ + ++ F IPR I +D ++Q+ N++ NAI FT SG I+ S T + + Sbjct: 408 EQNLALKVDFRTAIPRTIQSDPTRLRQVITNLVGNAIKFTESGSVSIVTSLLKTPSNALE 467 Query: 738 ----ILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 I+RV DTG+GMT + K F Q +S + GTGLGL +++ + +A G Sbjct: 468 GYDPIIRVDIIDTGIGMTPDQQAKIFDSFVQADSSTTRKFGGTGLGLSISRRLAEAMGGS 527 Query: 792 FYIFSTPAKGTLIEIIFP 809 + S G+ + P Sbjct: 528 LTVHSEVGIGSTFRVELP 545 >gi|91772161|ref|YP_564853.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711176|gb|ABE51103.1| HATPase domain-containing multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 763 Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 90/251 (35%), Positives = 145/251 (57%), Gaps = 2/251 (0%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I++ K+ ++ + AK AE + KS+FLA +SHE+RTPL +IIGFSE++ + G + Sbjct: 505 NITKRKKAEDMVIQAKLDAEATNRTKSEFLANMSHELRTPLNSIIGFSELLLEKTIGDIN 564 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N + Y + I G +L ++N++LDISK+ESGKM LH++ ++ +S+ + L+ A Sbjct: 565 NKQE-RYISNILTGGQHLLSLINEILDISKVESGKMELHYDEFAISSMISDIVILLNPLA 623 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 RI I T + I AD +KQI N+LSNAI FT G I I ++ + + Sbjct: 624 ITNRIEIITDIDKRLSLINADKIKIKQILYNLLSNAIKFTNENGTISIEAIF-DDKLMQI 682 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 ++D G+G+ +EK +PF QI ++ + +GTGLGL L K V+ + G ++ S Sbjct: 683 CIKDNGIGIEKENIEKLFQPFQQIDSAASRKYQGTGLGLALVKNFVEMHGGNIWVDSEMG 742 Query: 800 KGTLIEIIFPL 810 KG+ P+ Sbjct: 743 KGSAFTFTIPI 753 >gi|237799882|ref|ZP_04588343.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022737|gb|EGI02794.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 576 Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 108/381 (28%), Positives = 182/381 (47%), Gaps = 30/381 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S++E+ D + + + +GII N+ + L G ++++ P F P+ + + Sbjct: 187 SLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAPCKNFF--TDPASADAAIKR 244 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIII---KKLPFSSCYSLTMHDISEWKQEKNKLS 572 +LS E E ++S + ++ D++E K+ + L Sbjct: 245 VLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFA-AARDVTERKRFERTLE 303 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 E S KS+FLA +SHE+RTPL A+IGFSE +K+ G + + + Y I Sbjct: 304 EKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDDQR-RYIGDIFN 362 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG +L ++ND+LD+SK+E+G M L EPV LDE +S ++ +V+ A +RI ++ Sbjct: 363 SGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQAALQRIQLKLETDA 422 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--------------------- 731 + + D R KQI N+L+NA+ F+ GG +I++ Sbjct: 423 DFGLLELDRRKTKQIVYNLLANAVKFSQPGGWVILAVRQVPRSQAGVLEGDWPTYGFELP 482 Query: 732 -TSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + NE + L V DTG+G+ ++ K K F QI + + EGTGLGL + K + + + Sbjct: 483 SSDNEHFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTGLGLAMVKQLTELHG 542 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G + S GT + P+ Sbjct: 543 GCVAVASVKDLGTRFVVWLPI 563 >gi|127514128|ref|YP_001095325.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4] gi|126639423|gb|ABO25066.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4] Length = 1768 Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 115/380 (30%), Positives = 196/380 (51%), Gaps = 35/380 (9%) Query: 444 KRKMEIEVMQLCSILEATSD--GIAIINRE--GIILSTNRAVSKLFGYPVEDILRKPFTV 499 +++M+ E+ + + A D GI I+N + G+IL N S+ P+E R ++ Sbjct: 892 RKQMDRELAKREAHFRALFDNAGIGIVNVDDRGVILDCNEQFSQYLQLPIE---RLKGSL 948 Query: 500 FLEQNTP-------SVMNHYL---TEILSLDLRQTLEKITLGSTKEEKLLSLRIII---K 546 F + P + H + + + L++R L E + + + + K Sbjct: 949 FFDYQDPEQGLEAKNSFKHLMGDGADSVKLEIR------LLNQAGEARWMDVNMTGLSDK 1002 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 + + S L+M DIS K +L+ AK +A+ S KSDFLA +SHEIRTP+ AIIG Sbjct: 1003 QGEYRSAV-LSMADISSLKLLSEELTQAKDVADAASKAKSDFLANMSHEIRTPMNAIIGM 1061 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 S++ + + Y IDR+ +L I+ND+LD SKIE+GK+++ P LD Sbjct: 1062 SQLCLQTSL----DKKQQNYVEKIDRASKSLLGIINDILDFSKIEAGKLDIEAVPFQLDT 1117 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI 725 + + + + A +K++ + + A NIPR ++ D + Q+ +N+++NAI FT G + Sbjct: 1118 MLEDLSDMFSVKAADKQLELLFAVAPNIPRHLVGDPLRLSQVLINLMNNAIKFTEQGEVM 1177 Query: 726 I-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 + IS +EE++L+ VRD G+G+T + K + F Q +S + GTGLGL + K Sbjct: 1178 LSISQLVREDEEILLKFSVRDNGIGLTEEQRGKLFQSFSQADSSTTRKYGGTGLGLAICK 1237 Query: 783 AMVDANMGKFYIFSTPAKGT 802 +V+ G+ + S G+ Sbjct: 1238 QLVELMGGEIGVESQFGNGS 1257 >gi|222106443|ref|YP_002547234.1| Signal transduction histidine kinase [Agrobacterium vitis S4] gi|221737622|gb|ACM38518.1| Signal transduction histidine kinase [Agrobacterium vitis S4] Length = 784 Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 86/258 (33%), Positives = 151/258 (58%), Gaps = 6/258 (2%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 +S D+++ K+ + L A++ AE+ S KS+FL+R+SHE+RTPL +++GF++++ Sbjct: 386 FSKITRDVTDRKRTEEALLTARRDAERASQAKSEFLSRMSHELRTPLNSVLGFAQILDMD 445 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + + E I R+G +L +++++LDI++IE+G+M L EPV LD+ V+EAI+ Sbjct: 446 ----IEDRDMRESLAQILRAGRHLLSLIDEVLDIARIEAGRMELLIEPVGLDDIVTEAIA 501 Query: 674 LVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 L A K++ IR I+A D R Q+ LN+LSNA+ F GG+I +S Sbjct: 502 LAAPLAEPKQLTIRVEMEAAGQTIVAVDRRRFLQVLLNLLSNAVKFNRDGGEIRLSAQLL 561 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 +N + + + DTG G+ + + ++ KPF ++ + GTGLGL L+ ++ A G Sbjct: 562 TNTMIAIDIADTGCGIADVDRDRLFKPFERLGADRNA-TTGTGLGLALSVNLMQAMDGDL 620 Query: 793 YIFSTPAKGTLIEIIFPL 810 ++ + A G++ I P+ Sbjct: 621 FLTESDATGSVFSIHIPV 638 >gi|51892178|ref|YP_074869.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] gi|51855867|dbj|BAD40025.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] Length = 521 Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 85/246 (34%), Positives = 139/246 (56%), Gaps = 6/246 (2%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + +L A + E+ S +KS+FL +SHE+RTPLT+II F+E++ N P P E Sbjct: 280 ERTRELEEANRELERASRYKSEFLTMISHELRTPLTSIIAFTELLLND---PRLAPEQRE 336 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + + S +L ++ +LLD S++E+GK+ L E + L + + + + +Q A +KRI+ Sbjct: 337 SLSEVLESSQKLLGMITNLLDYSRLEAGKVKLFREVLDLRDLIRDGVRTIQPLAAKKRIM 396 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + A +P + AD + Q+ LN+LSNA+ FTP GG++ + EV + VRDTG Sbjct: 397 LSMDCAPEVPLVHADPLRISQVLLNLLSNAVKFTPEGGRVAVE-CRADQREVRVTVRDTG 455 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 G+ E E +PF Q ++ R EG GLGL L+ ++V A+ G+ ++ S P G Sbjct: 456 PGVPEEEQELIFQPFRQ--GREKGRPEGWGLGLALSASLVRAHDGRIWVESEPGHGAAFT 513 Query: 806 IIFPLY 811 P++ Sbjct: 514 FTLPIW 519 >gi|24215121|ref|NP_712602.1| histidine kinase sensor protein [Leptospira interrogans serovar Lai str. 56601] gi|24196185|gb|AAN49620.1| histidine kinase sensor protein [Leptospira interrogans serovar Lai str. 56601] Length = 731 Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 91/248 (36%), Positives = 146/248 (58%), Gaps = 7/248 (2%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q +L+ K++AEK + KS+FLA +SHE+RTPL +IIGFS +++ P G R Sbjct: 324 QRTEELNLQKEMAEKANKAKSEFLANMSHELRTPLNSIIGFSRLMQ----FPEGMERENR 379 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y + I SG +L+I+ND+LD+S+IE+ K+ L+ L E +S ++ ++ A K++ Sbjct: 380 YLDLIFHSGVHLLNIINDILDLSRIEADKLVLNESDFDLKELISTSVEMILGEAITKKLE 439 Query: 686 IRTSF--ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + F N I AD + ++Q+ LN+L NAI FT S G+I+I+ N L V+D Sbjct: 440 MTFEFFPKNANFEIRADPKRIRQVILNLLGNAIKFTDSTGKILITLNKLENN-FQLAVQD 498 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G+G+ E+ K + F Q+ + EG+GLGLP+ K +V+A+ G + S KG+ Sbjct: 499 SGIGIPTEEISKIFETFYQVKGEDRAAYEGSGLGLPIVKKIVEAHHGSIQVESALGKGSK 558 Query: 804 IEIIFPLY 811 +IFP + Sbjct: 559 FVVIFPFF 566 >gi|42521079|ref|NP_966994.1| sensor histidine kinase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410820|gb|AAS14928.1| sensor histidine kinase [Wolbachia endosymbiont of Drosophila melanogaster] Length = 475 Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 91/259 (35%), Positives = 146/259 (56%), Gaps = 6/259 (2%) Query: 565 KQEKN--KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 KQ K +L K+ E+E+++K F A V+HE+RTPL AIIGF+E+IKN+ G + N + Sbjct: 218 KQHKTNIELQQIKETLEQENANKLKFFASVTHELRTPLNAIIGFAELIKNETLGSMDNSQ 277 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y EYA+ I +G +L ++ND+LD SK ES + + +L++ + ++++ E Sbjct: 278 YKEYADDIYNAGTHLLALINDVLDFSKAESSSLTVEKVKFNLNKIIDSCVNMLLPKLKEA 337 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVILRV 741 I ++ N ++AD + +KQ+ +N+LSN+I FTP G I ++ + + + Sbjct: 338 GINLKKEMTNKQLLVIADPKRMKQVIINLLSNSIKFTPKDGLIRMVIKENIEKNLLTIEF 397 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D G+G+ ++ K M FGQ + R EGTG+GLPL+K +V+ G F I S G Sbjct: 398 HDNGIGIMQQDIYKVMSVFGQADSGY--RNEGTGIGLPLSKKLVELMDGTFDIKSEAKLG 455 Query: 802 TLIEIIFPLYDTSHPHDCI 820 T I + F Y+ D I Sbjct: 456 TTITLNF-FYEEQTCEDSI 473 >gi|91774050|ref|YP_566742.1| multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91713065|gb|ABE52992.1| HATPase domain-containing multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 582 Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 117/386 (30%), Positives = 196/386 (50%), Gaps = 36/386 (9%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINR--EGIILSTNRAV-------SKLFGYPVEDILR 494 KRK E+ I A+ IIN+ +GI++ N + +K+ GY DI+ Sbjct: 207 KRKTEM-------IKSASEKYSVIINKGNDGIVIEQNDKLKFVNPRFAKMVGYDANDIIG 259 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLR--------QTLEKITLGSTKEEKLLSLRIIIK 546 +PF+ + V NH+ E+ +++ + +I+L S E ++ + I Sbjct: 260 QPFSEY-------VQNHHKNELTNINRKLWKSEGPADHRYEISLISN-ENDIIPVEISST 311 Query: 547 KLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 L + S+ + DI+E KQ + +L AK AE ++ +S+F+ +SHE+RTPL + I Sbjct: 312 ILNYEGKSSIVSVIRDITEHKQHEQELLDAKVKAENANTAQSEFIHNISHELRTPLNSTI 371 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 GFSE++ + GPL N + +Y N + SG +L ++N++L+ISKIE+G++ L + V + Sbjct: 372 GFSEMMITEVLGPL-NDKQKKYLNNVKISGKHLLSLINEILNISKIENGEVELELDEVDI 430 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 V + L+ E + + + N+ + AD +KQI NILSNAI F+P Sbjct: 431 YTTVEDVEMLMAPILAENKNELIVNIEANVGKFTADRLKLKQILYNILSNAIKFSPENEN 490 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 II+ + ++ + D G G++ E +PF Q+ + + +GTGLGL + K Sbjct: 491 IIMD-IKVIDGKLQTNITDKGKGLSEKEQANIFQPFVQLDDEHSEKQKGTGLGLTIVKRF 549 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810 V + GK +I S KGT PL Sbjct: 550 VQLHKGKIWIDSEEGKGTTFCFTIPL 575 >gi|171056738|ref|YP_001789087.1| histidine kinase [Leptothrix cholodnii SP-6] gi|170774183|gb|ACB32322.1| histidine kinase [Leptothrix cholodnii SP-6] Length = 508 Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/231 (37%), Positives = 131/231 (56%), Gaps = 1/231 (0%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E + +KS FLA +SHE+RTPL AIIGFSEV+ Q FG + N + +EY I SG+ +L Sbjct: 272 EAANRNKSAFLANMSHELRTPLNAIIGFSEVLIEQMFGEV-NAKQLEYLRDIHASGHHLL 330 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++ND+LD+SKIE+G+M L L E + +++LV+ A + + + + + Sbjct: 331 TLINDVLDLSKIEAGRMELQPSRFHLPELLDNSLTLVRERAANHGLRLTLDVQDGLGDWV 390 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 AD R +KQ+ +N+LSNA+ FTP+GG + + + V DTGVG+ E + + Sbjct: 391 ADPRKIKQVVVNLLSNAVKFTPAGGHVTLRARRIDAGTAEIAVIDTGVGIAPEEQAQVFE 450 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F Q + EGTGLGL LA+ V+ + G + S P +G+ P Sbjct: 451 EFRQAGTDPLRKSEGTGLGLALARRFVELHGGTLRVDSAPGRGSTFAFTLP 501 >gi|91202233|emb|CAJ75293.1| very similar to histidine kinase [Candidatus Kuenenia stuttgartiensis] Length = 542 Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 87/249 (34%), Positives = 143/249 (57%), Gaps = 1/249 (0%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E + L AK + E + K+ FL+ +SHE+RTPL IIG+++++ Q G L N Sbjct: 146 NELRTSYKNLEAAKLLQEHANRAKTQFLSNMSHELRTPLNVIIGYTDLLSEQLPGKL-NE 204 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + + Y I+ SG +L ++NDLLD+SKI++G M L E VS+DE ++ +S++ + Sbjct: 205 KQLRYIGEINSSGKFLLSLINDLLDMSKIDAGAMELELEDVSIDELINGMVSMMSRQFVK 264 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 K+I ++ + ++ADLR KQI +N+L+NA+ FTP G++ I + V + V Sbjct: 265 KKIKVKIIIEPELSVVMADLRKCKQILMNLLTNALKFTPKDGRVEICAVSDGDSGVKIEV 324 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RDTG+G+ +++K F Q N + GTG+GL L + +V+ + GK + S KG Sbjct: 325 RDTGIGIAEDKIDKIFSEFYQAENVIDEQLGGTGIGLALTRRLVELHDGKIGVESKLGKG 384 Query: 802 TLIEIIFPL 810 + PL Sbjct: 385 STFWFTLPL 393 >gi|295703343|ref|YP_003596418.1| two-component sensor histidine kinase/ response regulator [Bacillus megaterium DSM 319] gi|294801002|gb|ADF38068.1| two-component sensor histidine kinase/ response regulator [Bacillus megaterium DSM 319] Length = 1012 Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 119/384 (30%), Positives = 205/384 (53%), Gaps = 38/384 (9%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-KPF-----------TVFLEQ 503 S+L S+G+ + EG +++ N +K+ P + +L PF T F + Sbjct: 502 SVLSTMSEGVVFHDLEGNLIAANAYAAKILNVPYDQMLSVNPFGLDWEIIHPDGTPFALE 561 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS---LTMHD 560 + PSV + E +R T+ I L E+KL L + + L S Y +T +D Sbjct: 562 DIPSVRCLHTKE----PVRNTVMGIYLN---EKKLTWLSVNAEPLQESKYYKGVVVTFYD 614 Query: 561 ISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 I++ ++++ L H AK+ AEK + KS+FL++VSHE+RTPL +I+G++++++ Q Sbjct: 615 ITKQQEQEQDLLHSNQQMIIAKEEAEKANQAKSEFLSKVSHELRTPLNSILGYAQILEEQ 674 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 L + + I ++GN +L ++N+ LD+SKIESG + ++ EPVS+ EA+ +A+ Sbjct: 675 GEKDL-TEKQLNRIRKILKAGNHLLYLINETLDLSKIESGHLAINLEPVSVKEAIEDALK 733 Query: 674 LVQLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +++ A +K ++ T F A I D +QI LN+L+NAI ++P+ I I T T Sbjct: 734 IMKPLAKDKHSILYTRFHAYQEVFIEVDELRFQQILLNLLTNAIKYSPAYRDITIYTDIT 793 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + V + + D G G+ EL + +PF ++ ++ +GTG+GL L K +V G Sbjct: 794 QH-HVTISIEDKGFGIPASELNRIFEPFYRV---NRLEKDGTGIGLALVKQLVVLMNGTC 849 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHP 816 + S KG+ + FP+ HP Sbjct: 850 GVRSEEGKGSTFWVRFPI---VHP 870 >gi|163794580|ref|ZP_02188551.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159180304|gb|EDP64827.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 860 Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 109/340 (32%), Positives = 176/340 (51%), Gaps = 6/340 (1%) Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 GIA I +G L N SK+ + +L F + + + ++L+ +R+ Sbjct: 344 GIANIGLDGKFLMVNERFSKIVDHEPSSLLSMSFDDITHPEDRAASHEGVRDLLN-GVRR 402 Query: 524 T--LEKITLGSTKE--EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579 T EK +GS + L+ ++ K+ + + DIS+ ++ + L A AE Sbjct: 403 TYVAEKRYIGSHGDIVWTQLTGALLTKEDGSPDYFISVIEDISDRRRAQESLRLALVDAE 462 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 + + KS+FLA +SHE RTPL AI GFSE++ + FG LG+P+Y EYA+ I S +L Sbjct: 463 RANQAKSEFLATISHEFRTPLNAISGFSEMLACRYFGDLGSPKYEEYAHNIWSSSQHLLQ 522 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699 +VN LD+S E+G L EPV + E V + + + + I S + P + A Sbjct: 523 LVNATLDLSSAEAGNPALTIEPVDIAEIVDDCVRSLTVEFERGGITTSVSVQPDRPPLHA 582 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759 D +++QI LN+LSNA+ TP GG I + S++ V++ V DTG+G+ + +++ P Sbjct: 583 DAGAIRQILLNLLSNAVKATPPGGSISVRVEANSDKHVLV-VSDTGMGVPEHLVDRMTDP 641 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 F I + +G GLGL + K++V + G I S A Sbjct: 642 FTVIGGNAYHSRDGKGLGLAIVKSLVQRHRGDLRIESRTA 681 >gi|160942539|ref|ZP_02089788.1| hypothetical protein FAEPRAM212_00016 [Faecalibacterium prausnitzii M21/2] gi|158446172|gb|EDP23174.1| hypothetical protein FAEPRAM212_00016 [Faecalibacterium prausnitzii M21/2] Length = 843 Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 91/256 (35%), Positives = 151/256 (58%), Gaps = 9/256 (3%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D ++ Q + A ++AEK S K+DFL+ +SH+IRTP+ AIIG + ++KN+ P Sbjct: 434 LSDRTDEHQTTLAVEAALEVAEKASKAKTDFLSNMSHDIRTPMNAIIGITTLMKNELHQP 493 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + E+ ++ SG L+L I+ND+LD+S+IESGK L+ E ++L +S+ S+++ Sbjct: 494 ---EKLAEHLAKLESSGQLLLGIINDILDMSRIESGKTTLNVEKINLPRQISQLESVIRQ 550 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSN 734 A ++R +L D +KQ+ +NILSNA+ +TP+GG I I THT + Sbjct: 551 QAGQRRQTFTVETHVQHENVLGDPNRLKQVLMNILSNAVKYTPNGGHIRLEIDELTHTEH 610 Query: 735 -EEVILRVRDTGVGMTNYELEKAM-KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + V+D G+GM+ E +K + +PF + S + +GTGLG+ + K++VD G Sbjct: 611 YTKYRFVVQDNGIGMSE-EFQKTLFEPFTREEKSGTNKVQGTGLGMAITKSIVDLMGGTI 669 Query: 793 YIFSTPAKGTLIEIIF 808 ++ ST KGT E++ Sbjct: 670 HVESTTGKGTQFEVVL 685 >gi|117925825|ref|YP_866442.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609581|gb|ABK45036.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 801 Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 107/349 (30%), Positives = 180/349 (51%), Gaps = 19/349 (5%) Query: 478 NRAVSKLFGYPVEDI--------LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 NR+ + LFGY V D+ L P + Q + + E +SL Q + +T Sbjct: 294 NRSFTDLFGYTVADVPDIHHWWPLAYPDPTY-RQEIQQLWQARVEE-MSLKKTQIMHPVT 351 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 T ++R I + ++L + D++ KQE +L AK+ AE + K DF Sbjct: 352 ANVTCNNG--NIRFIEVHMSVIDDHALVIFQDLTHRKQESEELRQAKEAAEAANQAKGDF 409 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 LA +SHEIRTP+ ++G EV++ + E + + ++G +L ++N +LD+S Sbjct: 410 LAVMSHEIRTPMNVMLGMVEVLQESTL----DQEQQEQLHSVQKAGKNLLALINQILDLS 465 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQI 707 K+++G + L E ++L E + E + LV + A+EK +L+ ++P+ ILAD ++QI Sbjct: 466 KLDAGHLQLQPEALNLHELIKEVVGLVAVLASEKNLLLSHQIDTSVPQWILADELRLRQI 525 Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 N+L NAI FT G + I+ + +++ L +RDTG+G+ +PF Q + Sbjct: 526 LFNLLGNAIKFTEKGS-VNITLSMRDPQQLALVIRDTGIGVDPAHHHAIFEPFTQQDGTI 584 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 R GTGLGL L++ +V+ G+ + S GT EI+ P+ T P Sbjct: 585 TRRFGGTGLGLTLSRRLVELMHGQIRMDSQLGCGTQFEILLPVERTQPP 633 >gi|269926146|ref|YP_003322769.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798] gi|269789806|gb|ACZ41947.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798] Length = 617 Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 112/373 (30%), Positives = 195/373 (52%), Gaps = 28/373 (7%) Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 V+ + ++E+E + I A+SD I + + +I N A KL G D L + Sbjct: 271 VNKYLQVHRIELETEKKNLIFNASSDAILVFSDNRLI-QVNPAGKKLLGI---DQLGEHL 326 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 Q+ + + + EIL+LD + T +E L +R + + P + +T Sbjct: 327 -----QDLDKICDVGIDEILNLDSPSIIRIETSIGIRE---LEVRKLEPENPNDNQKIIT 378 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 M D++E ++ L AK S+F++ VSHE+RTPL +++GF+ VI + GP Sbjct: 379 MRDVTEQRE----LDRAK----------SNFISMVSHELRTPLNSVLGFANVILSGATGP 424 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 L + R E+ YI S ++ +V+D+LD+S++++G LH V + + +S + Sbjct: 425 LSD-RQREFLEYIQASSRHLVQLVSDILDLSRMDAGTFTLHKSKVLPEIIAKQVVSQLSG 483 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A E+ I + IP+I AD R V+Q+ +N++ NAI FTP GG++I+ + V Sbjct: 484 LAAEQNIELAFLSDKKIPKIEADGRRVEQVLINLVGNAIKFTPPGGKVIVR-VRNQGDHV 542 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V DTG G++ ++++ + F Q + Q +GTGLGL +AK++V+ + GK ++ ST Sbjct: 543 LFSVSDTGPGISEEDMDRIFERFYQPIMNPQAATKGTGLGLAIAKSLVEQHGGKIWVDST 602 Query: 798 PAKGTLIEIIFPL 810 P +G P+ Sbjct: 603 PGQGATFYFTLPI 615 >gi|330973917|gb|EGH73983.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 504 Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 114/361 (31%), Positives = 194/361 (53%), Gaps = 21/361 (5%) Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLR 522 GI ++R G I + N ++ GY ++I+ + F+VF L+Q P + L E +++ R Sbjct: 7 GIFALDRNGFITTWNAGAERIKGYTEQEIIGQHFSVFYLQQECPQHPDMALHEA-TVNGR 65 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIA 578 T E K+ ++I S+ +S DIS+ + + L A++ A Sbjct: 66 YTEEGWR--QRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDRRVAEIALGTAREEA 123 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ S KS+FL+R+SHE+RTPL +I+GF++++ P I +I R+G +L Sbjct: 124 ERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMD--SPASQRPQI---GHILRAGQHLL 178 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP--- 695 ++N++LDI++IE+G ++L EPVSL + EA+ LV A + I ++ N+P Sbjct: 179 KLINEVLDIARIEAGHVSLILEPVSLSNVLEEALVLVSPMAADANIELKP--LPNLPDEI 236 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 ++AD + + Q+ LN+LSNAI + GQ+ I + E+V + V DTG G+ + + Sbjct: 237 GVVADRQRLIQVLLNLLSNAIKYNRPAGQVRIEIEQIA-EQVTISVVDTGYGIAPERIGQ 295 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 KPF ++ + + EGTGLGL L+K+M++ G + +TP +G + PL Sbjct: 296 LFKPFERLDANPSV--EGTGLGLALSKSMLEMMHGTLSVQNTPDEGCRFILALPLVRVQP 353 Query: 816 P 816 P Sbjct: 354 P 354 >gi|117926226|ref|YP_866843.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609982|gb|ABK45437.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1303 Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 103/364 (28%), Positives = 180/364 (49%), Gaps = 12/364 (3%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L I +A +G+ ++REG + N+ ++ G+ E+I K + +T + Sbjct: 430 LQGITDAMGEGLFAVDREGACIFINKQAERMLGWSAEEIHLKKMQGLIHASTRIADAYQW 489 Query: 514 TEILSLD----LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569 + S+D R E S + + + + +++ + DIS KQ++ Sbjct: 490 PALRSMDEAAPARSEDEHFINRSGQMFPVSMVAVPLEEGERIVGSVVVFQDISVRKQQEQ 549 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 L A + A++ + KSDFLA +SHEIRTP+ AI+G S + +PR Y Sbjct: 550 VLQGAVRAADQANRAKSDFLANMSHEIRTPMNAILGMSHLAIRTS----NDPRQRAYLQK 605 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I + +L I+ND+LD +K+E+GKM + P +LDE + +L + A+EK + + Sbjct: 606 IHGAAQSLLHIINDILDFAKVEAGKMEMEMVPFNLDEVLDTLATLTSVKADEKGLALIFR 665 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTG 745 ++P R++ D + QI LN+ NA+ FT G ++ + ++++LR V+DTG Sbjct: 666 RHLDLPQRVVGDALRLNQILLNLTGNAVKFTEQGSVVVNVEKVQQQGDQIVLRFSVQDTG 725 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +GM ++++ F Q +S R G GLGL + K +V+ G+ + STP G+ Sbjct: 726 IGMDESQIQQLFVAFEQADSSITRRYGGRGLGLAICKQLVNLMAGELSVQSTPEVGSCFT 785 Query: 806 IIFP 809 P Sbjct: 786 FTVP 789 >gi|254490059|ref|ZP_05103252.1| NMT1/THI5 like family [Methylophaga thiooxidans DMS010] gi|224464723|gb|EEF80979.1| NMT1/THI5 like family [Methylophaga thiooxydans DMS010] Length = 896 Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 109/371 (29%), Positives = 193/371 (52%), Gaps = 19/371 (5%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E ++L ++L+ T D + IN+ GII + N+A +LFGY ++++ K T+ + + Sbjct: 382 ESLRLQTLLDNTIDSVITINQSGIIENYNKASVQLFGYQPDEVIGKNITMLMPASYRDQH 441 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLS-------LRIIIKKLPFSSCYSLT--MHD 560 + LS T E +G E + L + + + + Y T D Sbjct: 442 KLGMARFLS-----TEETRIIGKPVEVEALHKSGNTFPIELTLSDFKWEQKYLFTGIARD 496 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 IS+ K E+ L AK AE+ ++ KS+FL+ +SHE+RTPL I+GFS++I + L N Sbjct: 497 ISQQKAEQEALLKAKYEAERANNAKSEFLSSMSHELRTPLNGILGFSQLILSDTEHTL-N 555 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + N I SG +L ++ND+L++S+I+SG++ + V + E L+Q A Sbjct: 556 EKQRHNINQIIHSGKHLLSLINDVLELSEIDSGRIKTSDDHVPIASVFEECQPLLQALAK 615 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-HTSNEEVIL 739 ++ I I + +LAD +KQ+ + ++SNAI + +GG++++S + T N + L Sbjct: 616 QQNINIDFQDGTD-AVVLADFTKLKQVFITLVSNAIKYNKTGGEVLVSASVQTHNNSLKL 674 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 + DTG G++ + F ++ + + EG G+GL ++K +++A G+ ST Sbjct: 675 TITDTGKGISKDRQAQVFTAFERLGQERHV--EGAGIGLSVSKRLIEAMGGQIDFASTEG 732 Query: 800 KGTLIEIIFPL 810 +GT I PL Sbjct: 733 QGTSFWIELPL 743 >gi|17231589|ref|NP_488137.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17133232|dbj|BAB75796.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 965 Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 94/276 (34%), Positives = 146/276 (52%), Gaps = 27/276 (9%) Query: 560 DISEWKQEKNKLSH-----AKKIAE--KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 DI+E KQ + KL AK AE + + K +FLA +SHE+RTPL AI+G SE Sbjct: 528 DINERKQAEEKLLRTNEQLAKANAELARATRLKDEFLANMSHELRTPLNAILGMSEGFIE 587 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 FG + N + + I RSG +L+++ND+LD+SKIESGK+ L VS+ ++ Sbjct: 588 GVFGAI-NQKQAKAIATIKRSGKHLLELINDILDLSKIESGKLELQISDVSVRSICDGSL 646 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI------- 725 + +Q A +K I + T +N+ I D R ++Q+ +N+LSNA+ FTP GG + Sbjct: 647 TFIQQMALKKNICLSTHIGSNLDTIQVDDRRLRQVLINLLSNAVKFTPEGGNVKLTVWLE 706 Query: 726 ------------IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 +IS + + + RV DTG+G+ + ++ K +PF Q+ +S G Sbjct: 707 EVGTNETLGAEKLISQSSIPSPHICFRVTDTGIGIASEDISKLFQPFTQLDSSLNRNYTG 766 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 TGLGL L K + + G + S +G+ + P Sbjct: 767 TGLGLALVKRITTLHGGTILVNSEVGQGSCFTVRIP 802 >gi|117925404|ref|YP_866021.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609160|gb|ABK44615.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 674 Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 101/350 (28%), Positives = 182/350 (52%), Gaps = 10/350 (2%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-EQNTPSVMNHYLTEI 516 L+ SD I +++G ++ N ++FGYP + IL P + +Q + ++H+ I Sbjct: 166 LDRASDAIISADQQGHVIFWNHGAERIFGYPKQTILHTPLLRLIPDQLHETFLSHFSEVI 225 Query: 517 LSLDLRQT---LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 S +++ + E L + E + + + + +S + DIS+ KQ + +L H Sbjct: 226 ASGEIKNSDSIYEFSGLRANGEVFPIEVSVSYWQGAERHFFSAVVRDISQRKQLETQLRH 285 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A++I+E + KS FLA +SHEIRTPL I+G ++++ + + N + S Sbjct: 286 AQQISESANRAKSTFLATMSHEIRTPLNTILGMGQLLEETDLTEMQH----WCVNILGNS 341 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +L ++ND+LD+SKIE G ++L P L + + E L A K I +R F+ + Sbjct: 342 GRALLTLINDILDLSKIEEGHLSLEHTPFDLHQLLQEVEELFTFSALAKGITLRGHFSES 401 Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 +P+ ++ D ++Q+ LN+L NAI FT G + +S + +E+ V D+G G+ Sbjct: 402 LPQWVMGDPTRLRQVLLNLLGNAIKFTKQGF-VELSAQTMAEDEICFSVFDSGPGIAKER 460 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 ++ PF Q +S + G+GLGL +++ +V G+ + S KG+ Sbjct: 461 QQEIFLPFTQADSSTTRKYGGSGLGLTISRRLVKLMHGQIQLESRLGKGS 510 >gi|289623553|ref|ZP_06456507.1| two-component sensor/regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649156|ref|ZP_06480499.1| two-component sensor/regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330867856|gb|EGH02565.1| two-component sensor/regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 576 Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 110/390 (28%), Positives = 183/390 (46%), Gaps = 34/390 (8%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S++E+ D + + + +GII N+ + L G ++++ P F P+ + + Sbjct: 187 SLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAPCKNFF--TDPASADAAIKR 244 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIII---KKLPFSSCYSLTMHDISEWKQEKNKLS 572 +LS E E ++S + ++ D++E K+ + L Sbjct: 245 VLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFA-AARDVTERKRFERTLE 303 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 E S KS+FLA +SHE+RTPL A+IGFSE +K+ G + + + Y I Sbjct: 304 EKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDAQR-RYIGDIFN 362 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG +L ++ND+LD+SK+E+G M L EPV LDE +S ++ +V+ A +RI ++ Sbjct: 363 SGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQAALQRIQLKLETEA 422 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--VI------------ 738 + + D R KQI N+L+NA+ F+ GG + +S S + VI Sbjct: 423 DFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLSVRQVSFAQAGVIEGGWPAHTFPLP 482 Query: 739 ---------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 L V DTG+G+ ++ K K F QI + + EGTGLGL + K + + + Sbjct: 483 SSDYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTGLGLAMVKQLTELHG 542 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 G + S G + P+ P +C Sbjct: 543 GCVAVASVKDLGARFVVWLPI----RPPEC 568 >gi|21228983|ref|NP_634905.1| sensor histidine kinase/response regulator [Methanosarcina mazei Go1] gi|20907524|gb|AAM32577.1| Sensor histidine kinase/response regulator [Methanosarcina mazei Go1] Length = 854 Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 120/369 (32%), Positives = 184/369 (49%), Gaps = 38/369 (10%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 LC IL S IIN I L T GY ++++ ++Q+ Sbjct: 162 LCGILLIESSSRKIINANPIALKTA-------GYSDKELIGMTCYRLIDQH-----GEEN 209 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL-TMHDISEWKQEKNKLS 572 LSLD L + L + + L LR ++ + Y + + D+S+ KQ + +L Sbjct: 210 CAALSLDQAGDLSESILLTATGKTLPILRSVVPVSIGGTGYFVESFIDLSDRKQAEEELL 269 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG--NPRYIEYANYI 630 AK AE + S+FLA +SHE+RTPLTAIIGFSE++ G N +++ I Sbjct: 270 QAKIAAESANRSMSEFLATMSHELRTPLTAIIGFSELMLGGSTGEFDELNKKFL---GNI 326 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG +L ++N +LD+SKIE+GKM L S+ SL +++N K IL + Sbjct: 327 STSGKHLLSLINSILDLSKIEAGKMELQ----------SDYFSLQDIFSNTKNILSPLAL 376 Query: 691 ANNIPR---------ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 NI + AD KQI N++SNA+ FT GG + + S + V + V Sbjct: 377 KKNISMDFNVEPGFFVYADRTRFKQIMYNLVSNAVKFTQKGGSVEVLGI-VSEKGVRVSV 435 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G++ E+++ KPF QI ++ + EGTGLGL L+K V+ + G+ ++ S P KG Sbjct: 436 SDTGIGISKDEIKQLFKPFKQIDSTLSRKYEGTGLGLVLSKKFVEMHGGRIWVESEPGKG 495 Query: 802 TLIEIIFPL 810 + P+ Sbjct: 496 STFTFEVPV 504 >gi|329930043|ref|ZP_08283668.1| PAS domain S-box protein [Paenibacillus sp. HGF5] gi|328935442|gb|EGG31914.1| PAS domain S-box protein [Paenibacillus sp. HGF5] Length = 642 Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 113/373 (30%), Positives = 200/373 (53%), Gaps = 32/373 (8%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 D+++ ++K++ + + S+ + D I N EG I++ N+ +L G+ + +++ + Sbjct: 125 DSKVAEQKLQESIERYTSLKKYNHDAIISFNLEGRIINGNQMAEQLTGFKIPELIGTKIS 184 Query: 499 VFL-EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE----EKLLSLRIII---KKLPF 550 + E+N V++ + D + I K+ E L +L I+ K + F Sbjct: 185 NLIGERNLARVLSS------AADYVAAEKGINCIHHKDGHQVEVLATLAPIVIHGKNVGF 238 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + I++ E+ +L K+ AEK + KS+FLA +SHEIRTP+ +IG +++I Sbjct: 239 --------YIIAKDMTEQKRLIIEKEAAEKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLI 290 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + EY I +SG +L+I+ND+LD SKIESG+ L E SL A+SE Sbjct: 291 LETEL----DEEQQEYVQIIKKSGTTLLNIINDILDFSKIESGRTELVEETFSLRTALSE 346 Query: 671 AISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 ++++ A +K I + TS A+++P ++ D+ ++Q+ +N+LSNAI FTP+G + IS Sbjct: 347 TLNMILPKALDKNIEVTTSVASDVPNQVYGDVTKLRQVLMNLLSNAIKFTPNGA-VSISV 405 Query: 730 THT---SNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 +N E+I V DTG+G+ + ++ + +PF Q+ + + EGTGLGL + K +V Sbjct: 406 QCVRDQANSELIQFSVTDTGIGVPSEKIAQLFEPFYQVDHYMTRQVEGTGLGLAICKKLV 465 Query: 786 DANMGKFYIFSTP 798 G + P Sbjct: 466 QLMGGDIWYERNP 478 >gi|45657401|ref|YP_001487.1| histidine kinase sensor protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600640|gb|AAS70124.1| histidine kinase sensor protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 731 Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 91/248 (36%), Positives = 146/248 (58%), Gaps = 7/248 (2%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q +L+ K++AEK + KS+FLA +SHE+RTPL +IIGFS +++ P G R Sbjct: 324 QRTEELNLQKEMAEKANKAKSEFLANMSHELRTPLNSIIGFSRLMQ----FPEGMERENR 379 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y + I SG +L+I+ND+LD+S+IE+ K+ L+ L E +S ++ ++ A K++ Sbjct: 380 YLDLIFHSGVHLLNIINDILDLSRIEADKLVLNESDFDLKELISTSVEMILGEAITKKLE 439 Query: 686 IRTSF--ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + F N I AD + ++Q+ LN+L NAI FT S G+I+I+ N L V+D Sbjct: 440 MTFEFFPKNANFEIRADPKRIRQVILNLLGNAIKFTDSTGKILITLNKLENN-FQLAVQD 498 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G+G+ E+ K + F Q+ + EG+GLGLP+ K +V+A+ G + S KG+ Sbjct: 499 SGIGIPTEEISKIFETFYQVKGEDRAAYEGSGLGLPIVKKIVEAHHGSIQVESALGKGSK 558 Query: 804 IEIIFPLY 811 +IFP + Sbjct: 559 FVVIFPSF 566 >gi|331013207|gb|EGH93263.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 641 Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 131/438 (29%), Positives = 226/438 (51%), Gaps = 42/438 (9%) Query: 398 ARLHTIQWNREN-SLAMTFIPFEKANQFPEN--MPQNGIEPEDVDTRINKRKMEI----E 450 AR+H +Q N + +L +P Q PE + Q G + + +R+ + E Sbjct: 215 ARVHQVQRNAQRLALGHPLLP-----QPPEKDEIGQLGTRLVEAGQLLAERERALRDNEE 269 Query: 451 VMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSV 508 ++L I+E D GI ++R G + + N ++ GY ++I+ K F+VF L + P Sbjct: 270 RLRL--IIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQH 327 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEW 564 L E +++ R T E + K+ ++I + +S DIS+ Sbjct: 328 PEMALREA-TVNGRYTEE--SWRRRKDGSRFWASVVITAQYDGNDELRGFSKITRDISDR 384 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + + L A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ P I Sbjct: 385 RVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMD--SPASQRPQI 442 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +I R+G +L ++N++LDI++IE+G ++L EPVSL + EA+ LV A + I Sbjct: 443 ---GHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLVSPMAADANI 499 Query: 685 LIRTSFANNIPR------ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 ++ +P+ ++AD + + Q+ LN+LSNAI + GQ+ I S+E V Sbjct: 500 ELKA-----LPQLPDKLGVVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQ-SDERVT 553 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V DTG G+ + + KPF ++ + + EGTGLGL L+K+M++ G + +TP Sbjct: 554 VSVIDTGYGIAPERIGQLFKPFERLDANPSV--EGTGLGLALSKSMLEMMHGTLSVQNTP 611 Query: 799 AKGTLIEIIFPLYDTSHP 816 A+G + PL + P Sbjct: 612 AEGCRFILELPLVLVNAP 629 >gi|313113960|ref|ZP_07799516.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623723|gb|EFQ07122.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 780 Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 88/254 (34%), Positives = 145/254 (57%), Gaps = 9/254 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E +Q ++ + A + AE+ S K+DFLA +SH+IRTP+ AIIG + ++KN+ P + Sbjct: 361 ELRQAQDIAAEALQSAERASKAKTDFLANMSHDIRTPMNAIIGITTLMKNELHQP---EK 417 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 E+ ++ SG L+L I+ND+LD+S+IESGK L+ E ++L + +S+ S+++ A ++ Sbjct: 418 LAEHLGKLENSGQLLLGIINDILDMSRIESGKTTLNVEKMNLPQQISQLDSIIRQQAGQR 477 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR-- 740 R + +LAD + ++ +NILSNA+ +TP+GG I E R Sbjct: 478 RQTFTVNTHLQHENVLADPNRLNRVLMNILSNAVKYTPTGGHIRFEVDELPRNEHYARYR 537 Query: 741 --VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V+D G+GM+ + PF + S + +GTGLG+ + K +VD G + ST Sbjct: 538 FVVQDDGIGMSKAYQKTLFDPFTREERSGTNKVQGTGLGMAITKNIVDLMGGSINVESTT 597 Query: 799 AKGTLIEII--FPL 810 KGT E++ FP+ Sbjct: 598 GKGTRFEVVLEFPV 611 >gi|254785340|ref|YP_003072769.1| signal transduction histidine-protein kinase BarA [Teredinibacter turnerae T7901] gi|237685431|gb|ACR12695.1| signal transduction histidine-protein kinase BarA [Teredinibacter turnerae T7901] Length = 932 Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 92/237 (38%), Positives = 138/237 (58%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA SHEIRTPL I+GFSE++K PL +Y Sbjct: 255 ELDIARKGAIQASKVKSEFLANTSHEIRTPLNGILGFSELLKKTELNPLQE----DYLET 310 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I S +L I+ND+LD S++E+GK+ L ++PV L + + EA+ L A+EK++ + T Sbjct: 311 IYESAKGLLTIINDILDFSRLETGKLTLEYKPVRLRQVLEEALRLQAPAAHEKKLRLLTI 370 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVIL--RVRDTG 745 ++IP +L D +KQ+ N+LSNAI FT G +I +S ++ ++ L R+ D+G Sbjct: 371 VDHDIPEHLLGDPLRLKQVLTNLLSNAIKFTNVGHILISVSKEDRADNQITLQFRITDSG 430 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + EK F Q+ S GTGLGL +AK +VD G+ + S P KG Sbjct: 431 IGLNQDQQEKLFDAFTQLDASDSRTHGGTGLGLAIAKGLVDRMHGEIGVESEPGKGA 487 >gi|213018588|ref|ZP_03334396.1| sensor histidine kinase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995539|gb|EEB56179.1| sensor histidine kinase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 444 Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 87/247 (35%), Positives = 142/247 (57%), Gaps = 5/247 (2%) Query: 565 KQEKN--KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 KQ K +L K+ E+E+++K F A V+HE+RTPL AIIGF+++IKN+ G + + + Sbjct: 187 KQHKTNIELQRVKEALEQENANKIKFFASVTHELRTPLNAIIGFAKLIKNETLGSVDHSK 246 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y EY + I +G +L ++ND+LD SK ES + + +L++ + + ++ E Sbjct: 247 YKEYVDDIYNAGTHLLALINDVLDFSKAESSSLTVEKVKFNLNKIIDSCLKMLSPKLKET 306 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVILRV 741 I ++ ++ ++AD + +KQ+ +N+LSNAI FTP GG I +I + + + Sbjct: 307 GISLKKEISDKQLLVIADPKRMKQVIINLLSNAIKFTPQGGLIRMIIKENIEKNLLTIEF 366 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D G+G+ ++ K M FGQ + R EGTG+GLPL+K +V+ G F I S G Sbjct: 367 HDNGIGIMQQDIYKVMSVFGQADSGY--RNEGTGIGLPLSKKLVELMGGTFNIQSEAKLG 424 Query: 802 TLIEIIF 808 T I + F Sbjct: 425 TTITLSF 431 >gi|190571186|ref|YP_001975544.1| sensor histidine kinase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357458|emb|CAQ54892.1| sensor histidine kinase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 475 Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 87/247 (35%), Positives = 142/247 (57%), Gaps = 5/247 (2%) Query: 565 KQEKN--KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 KQ K +L K+ E+E+++K F A V+HE+RTPL AIIGF+++IKN+ G + + + Sbjct: 218 KQHKTNIELQRVKEALEQENANKIKFFASVTHELRTPLNAIIGFAKLIKNETLGSVDHSK 277 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y EY + I +G +L ++ND+LD SK ES + + +L++ + + ++ E Sbjct: 278 YKEYVDDIYNAGTHLLALINDVLDFSKAESSSLTVEKVKFNLNKIIDSCLKMLSPKLKET 337 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVILRV 741 I ++ ++ ++AD + +KQ+ +N+LSNAI FTP GG I +I + + + Sbjct: 338 GISLKKEISDKQLLVIADPKRMKQVIINLLSNAIKFTPQGGLIRMIIKENIEKNLLTIEF 397 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D G+G+ ++ K M FGQ + R EGTG+GLPL+K +V+ G F I S G Sbjct: 398 HDNGIGIMQQDIYKVMSVFGQADSGY--RNEGTGIGLPLSKKLVELMGGTFNIQSEAKLG 455 Query: 802 TLIEIIF 808 T I + F Sbjct: 456 TTITLSF 462 >gi|197117192|ref|YP_002137619.1| sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197086552|gb|ACH37823.1| sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] Length = 882 Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 90/258 (34%), Positives = 142/258 (55%), Gaps = 14/258 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K+ + L A AE+ + KS+FL+ +SHEIRTP+ +IG +++++ Sbjct: 479 DVTERKEAEEALRQAMDAAERANRAKSEFLSNMSHEIRTPMNGVIGMTQLLELTEL---- 534 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N EY + + G +L ++ND+LDISKIE+G M L E SL +++ + + A Sbjct: 535 NAEQREYVSSLKSCGKNLLTLINDILDISKIEAGMMTLESEQFSLLQSIRDVVMTQNPAA 594 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 EK + ++ A ++P +L D KQI LN+L NA+ FT GG ++ T T E+ + Sbjct: 595 REKALRLQVEVAPDVPDAVLGDQLRFKQILLNLLGNAVKFTEKGG---VTITVTLLEQPV 651 Query: 739 ------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + VRDTGVG+ LE+ KPF Q+ S + GTGLGL +++ + + G Sbjct: 652 APPLFQMAVRDTGVGIAAEALEEIFKPFVQVDGSTTRKYGGTGLGLSISRRLAEMMGGSI 711 Query: 793 YIFSTPAKGTLIEIIFPL 810 I STP G+ + PL Sbjct: 712 SIESTPGVGSCFTLTLPL 729 >gi|88603925|ref|YP_504103.1| multi-sensor signal transduction histidine kinase [Methanospirillum hungatei JF-1] gi|88189387|gb|ABD42384.1| Cache sensor signal transduction histidine kinase [Methanospirillum hungatei JF-1] Length = 646 Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 83/232 (35%), Positives = 136/232 (58%), Gaps = 3/232 (1%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE+ KS FLA +SHE+RTPL +IIGF+ +I GPL N + + S + Sbjct: 412 AEEADQLKSAFLATMSHELRTPLNSIIGFTGIILQGLAGPL-NKEQEKQLGMVQDSARHL 470 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ND+LDISKIE+G++N+ EPV++ +++ + ++ A +K + + + + I Sbjct: 471 LALINDVLDISKIEAGELNISREPVNIQKSIESVCTTLRKSAEDKGLSLHVDISPDTGFI 530 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 + D R ++QI +N+++NAI FT G + S+ N V + V DTG+G++ E++K Sbjct: 531 IGDQRRIEQILINLINNAIKFTERGYVCVKSSLREKN--VCISVSDTGIGISEEEMKKLF 588 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +PF QI + EGTGLGL + K +V+ + G + S P KG+ +I P Sbjct: 589 RPFQQIDTGTTRKHEGTGLGLSICKKLVELHGGTIMVTSEPGKGSEFTVILP 640 >gi|330881741|gb|EGH15890.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 554 Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 116/369 (31%), Positives = 197/369 (53%), Gaps = 22/369 (5%) Query: 457 ILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLT 514 I+E D GI ++R G + + N ++ GY ++I+ K F+VF L + P + L Sbjct: 50 IIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQHPDMALR 109 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNK 570 E +++ R T E + K+ ++I + +S DIS+ + + Sbjct: 110 EA-TVNGRYTEE--SWRRRKDGSRFWASVVITAQYDGNDELRGFSKITRDISDRRVAEIA 166 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ P I +I Sbjct: 167 LGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMD--SPASQRPQI---GHI 221 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 R+G +L ++N++LDI++IE+G ++L EPVSL + EA+ LV A + I ++ Sbjct: 222 LRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLVSPMAADANIELKA-- 279 Query: 691 ANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 +P ++AD + + Q+ LN+LSNAI + GQ+ I S+E V + V DTG G Sbjct: 280 LPQLPDKLGVVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQ-SDERVTVSVIDTGYG 338 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + + KPF ++ + + EGTGLGL L+K+M++ G + +TPA+G + Sbjct: 339 IAPERIGQLFKPFERLDANPSV--EGTGLGLALSKSMLEMMHGTLSVQNTPAEGCRFILE 396 Query: 808 FPLYDTSHP 816 PL P Sbjct: 397 LPLVLVHAP 405 >gi|119487002|ref|ZP_01620874.1| two-component system sensory histidine kinase [Lyngbya sp. PCC 8106] gi|119455931|gb|EAW37065.1| two-component system sensory histidine kinase [Lyngbya sp. PCC 8106] Length = 1236 Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 113/368 (30%), Positives = 179/368 (48%), Gaps = 19/368 (5%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYP-----VEDILRKPFTVFLEQNTPSVMN 510 SI E ++GI +G LS N A++++ GY +E I V+++ P+ Sbjct: 560 SIFENAAEGICQTTPQGRYLSANPALAQILGYATPADLIEGITDIKTQVYIK---PNRRA 616 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEK 568 ++ E+ + + E +S R++ CY T+ DI+E K Sbjct: 617 EFIAEMQANSVVSGFESQVYRQDGNIIWISENARVVRDATGQIICYEGTVEDITERKAAS 676 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 L AK+ A S KS FLA +SHE+RTPL AIIG+SE++ + G + Sbjct: 677 VALKQAKEAAIAASRAKSTFLANMSHELRTPLNAIIGYSEILTEEAEDS-GYRHIVPDLE 735 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +G +L ++ND+LDISKIE+G+M+L+ E S+ + IS Q + + Sbjct: 736 RICTAGRNLLTLINDILDISKIEAGRMDLYLEDFSISALIESVISTAQPLVDRNSNTLEV 795 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-------HTSNEEVILRV 741 ++ I + AD+ V+QI LN+LSNA FT + GQI + + +T+ + +V Sbjct: 796 ECSDQIDILYADITKVRQILLNLLSNAAKFT-TAGQIKLKVSPQPAEFPNTAPSLIQFQV 854 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+GM+ +L+ +PF Q S R GTGLGL +++ G I S G Sbjct: 855 SDTGIGMSPEQLDLLFQPFTQGDASTTRRYGGTGLGLTISQRFCQMMGGTITIDSQLDCG 914 Query: 802 TLIEIIFP 809 + +I P Sbjct: 915 STFTVILP 922 >gi|320324827|gb|EFW80899.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320329193|gb|EFW85190.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 778 Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 131/438 (29%), Positives = 226/438 (51%), Gaps = 42/438 (9%) Query: 398 ARLHTIQWNREN-SLAMTFIPFEKANQFPEN--MPQNGIEPEDVDTRINKRKMEI----E 450 AR+H +Q N + +L +P Q PE + Q G + + +R+ + E Sbjct: 215 ARVHQVQRNAQRLALGHPLLP-----QPPEKDEIGQLGTRLVEAGQLLAERERALRDNEE 269 Query: 451 VMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSV 508 ++L I+E D GI ++R G + + N ++ GY ++I+ K F+VF L + P Sbjct: 270 RLRL--IIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQH 327 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEW 564 + L E +++ R T E + K+ ++I + +S DIS+ Sbjct: 328 PDMALREA-TVNGRYTEE--SWRRRKDGSRFWASVVITAQYDGNDELRGFSKITRDISDR 384 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + + L A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ P I Sbjct: 385 RVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMD--SPASQRPQI 442 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +I R+G +L ++N++LDI++IE+G ++L EPVSL + EA+ LV A + I Sbjct: 443 ---GHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLVSPMAADANI 499 Query: 685 LIRTSFANNIPR------ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 ++ +P+ ++AD + + Q+ LN+LSNAI + GQ+ I S+E V Sbjct: 500 ELKA-----LPQLPDKLGVVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQ-SDERVT 553 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V DTG G+ + + KPF ++ + + EGTGLGL L+K+M++ G + +TP Sbjct: 554 VSVIDTGYGIAPERIGQLFKPFERLDANPSV--EGTGLGLALSKSMLEMMHGTLSVQNTP 611 Query: 799 AKGTLIEIIFPLYDTSHP 816 A+G + PL P Sbjct: 612 AEGCRFILELPLVLVHAP 629 >gi|298486447|ref|ZP_07004507.1| Sensory box histidine kinase/response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158924|gb|EFH99984.1| Sensory box histidine kinase/response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 523 Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 116/372 (31%), Positives = 198/372 (53%), Gaps = 28/372 (7%) Query: 457 ILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLT 514 I+E D GI ++R G + + N ++ GY ++I+ K F+VF L + P + L Sbjct: 19 IIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQHPDMALR 78 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNK 570 E +++ R T E + K+ ++I + +S DIS+ + + Sbjct: 79 EA-TVNGRYTEE--SWRRRKDGSRFWASVVITAQYDGNDELRGFSKITRDISDRRVAEIA 135 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ P I +I Sbjct: 136 LGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMD--SPASQRPQI---GHI 190 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 R+G +L ++N++LDI++IE+G ++L EPVSL + EA+ LV A + I ++ Sbjct: 191 LRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLVSPMAADANIELKA-- 248 Query: 691 ANNIPR------ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 +P+ ++AD + + Q+ LN+LSNAI + GQ+ I S+E V + V DT Sbjct: 249 ---LPQLPDKLGVVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQ-SDERVTVSVIDT 304 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G G+ + + KPF ++ + + EGTGLGL L+K+M++ G + +TPA+G Sbjct: 305 GYGIAPERIGQLFKPFERLDANPSV--EGTGLGLALSKSMLEMMHGTLSVQNTPAEGCRF 362 Query: 805 EIIFPLYDTSHP 816 + PL P Sbjct: 363 ILELPLVLVHAP 374 >gi|225165722|ref|ZP_03727518.1| Histidine kinase [Opitutaceae bacterium TAV2] gi|224800031|gb|EEG18464.1| Histidine kinase [Opitutaceae bacterium TAV2] Length = 508 Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 116/378 (30%), Positives = 186/378 (49%), Gaps = 34/378 (8%) Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS--------KLFGYPVEDIL 493 +++R ++I + +++E D + +++ ++ NRA S + FG P DIL Sbjct: 1 MDRRVIDIAPIARATLVENLDDRLIVLDENDHVIDLNRAASDSLRTTRSQAFGRPARDIL 60 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-KITLGSTKEEKLLSLRIIIKKLPFSS 552 P+ P V+ H L L +ITLG+ + +L+ +L + Sbjct: 61 -APW--------PPVLAH-------LHAHHPLRTEITLGTHTYD--FTLQPATTELHAKA 102 Query: 553 CYS-LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 L + DI+E KQ++++L AK A +S FLA +SHEIRTP+ +IGF+++++ Sbjct: 103 PPRILLLRDITERKQDEHRLRAAKDAAVAADRAQSRFLAMMSHEIRTPMNGVIGFTQLLR 162 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + PL NPR +EY + I RSG +L I++D+LD SK+ +G + L P L + + Sbjct: 163 DT---PL-NPRQMEYVDLITRSGQSLLVIIDDILDYSKVSAGHLQLERAPCELRRLIEQH 218 Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 I L+ A +K I I +P I+ D + QI N++SNAI FT GG + I Sbjct: 219 IQLLHTGARQKNITIDLHIDPLVPSLIIGDAVRIGQIVSNLVSNAIKFTHHGG-VHIHLV 277 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + L V DTG+G+ + +PF Q S R GTGLGLP+ + + G Sbjct: 278 PDGPRCLALHVTDTGIGIPPEAHRRIFEPFSQADGSTTRRYGGTGLGLPITRLLCTLMGG 337 Query: 791 KFYIFSTPAKGTLIEIIF 808 + S P G+ F Sbjct: 338 TLTLSSQPGHGSTFTATF 355 >gi|163792977|ref|ZP_02186953.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159181623|gb|EDP66135.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 388 Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 132/224 (58%), Gaps = 1/224 (0%) Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 +D A ++HE+RTPL A+IGF E++ + FGPL RY +Y+ I +G +L +VN L Sbjct: 149 ADVFANLAHEMRTPLNAVIGFGEILVGEHFGPLA-ARYKDYSRDIVGAGYHLLALVNGAL 207 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705 D+ + +G L PV L ++ I+++Q A K I + + +P I AD ++ Sbjct: 208 DLGRASAGPDTLDERPVELRAVLTSTIAMLQRSATLKSITVEVADLAGLPLIYADETRMR 267 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 Q+ +N++SNAI ++P G + I + +V + V D GVGM+ E+ A+ PFG+ + Sbjct: 268 QLFVNLVSNAIKYSPVGRGVTIKHWIEDDGQVCIDVVDGGVGMSIDEVAIALLPFGRTES 327 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + GTGLGLP+ KA+V+A+ G+ I S P +GT I ++ P Sbjct: 328 AMRTGEAGTGLGLPICKAIVEAHGGRLTIDSAPRRGTTISVVLP 371 >gi|94263978|ref|ZP_01287780.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93455650|gb|EAT05832.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 605 Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 103/371 (27%), Positives = 197/371 (53%), Gaps = 12/371 (3%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 ++ ++ +E +L IL+ T +G I+ E +LS N++ K+FGY +++L + + Sbjct: 133 KLARQALEEREKRLALILDNTVEGFITIDTERRVLSFNKSAEKIFGYRADEVLGRNVKML 192 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSS--CYSL 556 + S + Y++ L+ +++ + + G K ++ L++ + + + Sbjct: 193 MPDPYHSGHDQYVSNYLTSGVKKIIGIGREVQGRRKTGEIFPLQLAVSETLVGEERLFVG 252 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRF 615 ++ DI+E K+++ AK+ AE + KS+FLA +SHE+RTP+ IIG ++ +K++ Sbjct: 253 SIQDITERKRQEALQRQAKEAAEAANRSKSEFLANMSHEMRTPMNVIIGLGQLALKSE-- 310 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P P+ +Y I S +L ++ND LD++++E+GKM + P L + +++ L+ Sbjct: 311 -PPPPPKLHDYLETITASATTLLVLINDTLDLARLETGKMAIDQIPFDLSDILNKLEKLM 369 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS 733 A EK + + + A +P +++ D + Q+ +N+ SNAI F+ G + ++ Sbjct: 370 GQRAAEKGLQLVFAVAPTVPDQMVGDPHRLSQVLINLTSNAIKFSDKGEVSLSFEMADST 429 Query: 734 NEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + LRV RDTG+G+ +LE +PF Q S + GTGLGL +A +V GK Sbjct: 430 ADTFTLRVTVRDTGIGIAPEQLETIFQPFTQADGSSTRKYGGTGLGLSIANRLVQLMGGK 489 Query: 792 FYIFSTPAKGT 802 + S P +G+ Sbjct: 490 LEVESEPGQGS 500 >gi|170751967|ref|YP_001758227.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170658489|gb|ACB27544.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 846 Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 130/481 (27%), Positives = 215/481 (44%), Gaps = 56/481 (11%) Query: 336 YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395 + +G + AN +FL LT Y + + G S LL P L A +P R+ T Sbjct: 408 HRNGTIVAANGAFLDLTGYPDLPSLARVG-FSGLL--PGLPAAEAPEPSA-RRTTVTTAD 463 Query: 396 ASARL-----HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450 AR + W + + P E+A+ + + E R+ + Sbjct: 464 GGARPVELLGGALPWAGATATCLVARPVEEADV------ADALRAE----RLARAAQTER 513 Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 + L+A G+ ++ G I++ NRA + LFG +I+ F + + SV+ Sbjct: 514 TASAEATLDALETGVVTVDAAGRIVALNRAATDLFGCDPREIVGSTFVTLFDGD--SVL- 570 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 T+ G+ +++ L L ++ + I + E + Sbjct: 571 -------------TVADALRGAAPGRRVVRLAGAPVSLTVAAGQGRRVVQIGRAESEAAE 617 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + + + ++D L R+ +R PLT II + + + FGPLG+ RY I Sbjct: 618 RAAEGR--PDPAPARADALGRLEGAVRQPLTGIIDLAAAMLKEPFGPLGDARYRGCLAEI 675 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD--EAVSEAISLVQLYANEKRILIRT 688 SG + + V LLD++ +E+G +LH EP +LD + V+ ++ +Q A RI++RT Sbjct: 676 KASGEAMRERVGKLLDLAAVEAG--SLHLEPRALDLNDVVASCVARLQGEAARGRIVMRT 733 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 SF+ +I + AD RSV + A ++ NAI + +G QII+ST T + +RVRDTG G Sbjct: 734 SFSTDIGDLEADERSVSRAASLVIENAIRRSTAGSQIIVSTGSTERAGIAVRVRDTGAGH 793 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 P + P GL LP +A+V+AN G+ + + P GTL+EII Sbjct: 794 A---------PRSEAPQDDVE----DGLALP--RALVEANGGRLELSARPEDGTLVEIIM 838 Query: 809 P 809 P Sbjct: 839 P 839 Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 8/108 (7%) Query: 78 PIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL 137 P+ R RF W +DA G L ++ P+ + ++G R D++ + + + L Sbjct: 161 PLRRDDRFLWRLDAAGVLTTLTG--PEALSG----LVGQRWQDLAASGRLSGADAVLAAL 214 Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185 + + T+ G+ + GT + +DL+ P+ + FSGF GFG++ Sbjct: 215 RDRRTFRGEPAVL-DAGTGAFR-VDLSGAPLGRGDAAFSGFGGFGLIR 260 >gi|71736179|ref|YP_274133.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556732|gb|AAZ35943.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] Length = 778 Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 131/438 (29%), Positives = 226/438 (51%), Gaps = 42/438 (9%) Query: 398 ARLHTIQWNREN-SLAMTFIPFEKANQFPEN--MPQNGIEPEDVDTRINKRKMEI----E 450 AR+H +Q N + +L +P Q PE + Q G + + +R+ + E Sbjct: 215 ARVHQVQRNAQRLALGHPLLP-----QPPEKDEIGQLGTRLVEAGQLLAERERALRDNEE 269 Query: 451 VMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSV 508 ++L I+E D GI ++R G + + N ++ GY ++I+ K F+VF L + P Sbjct: 270 RLRL--IIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQH 327 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEW 564 + L E +++ R T E + K+ ++I + +S DIS+ Sbjct: 328 PDMALREA-TVNGRYTEE--SWRRRKDGSRFWASVVITAQYDGNDELRGFSKITRDISDR 384 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + + L A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ P I Sbjct: 385 RVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMD--SPASQRPQI 442 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +I R+G +L ++N++LDI++IE+G ++L EPVSL + EA+ LV A + I Sbjct: 443 ---GHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLVSPMAADANI 499 Query: 685 LIRTSFANNIPR------ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 ++ +P+ ++AD + + Q+ LN+LSNAI + GQ+ I S+E V Sbjct: 500 ELKA-----LPQLPDKLGVVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQ-SDERVT 553 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V DTG G+ + + KPF ++ + + EGTGLGL L+K+M++ G + +TP Sbjct: 554 VSVIDTGYGIAPERIGQLFKPFERLDANPSV--EGTGLGLALSKSMLEMMHGTLSVQNTP 611 Query: 799 AKGTLIEIIFPLYDTSHP 816 A+G + PL P Sbjct: 612 AEGCRFILELPLVLVHAP 629 >gi|242280792|ref|YP_002992921.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123686|gb|ACS81382.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 719 Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 120/394 (30%), Positives = 205/394 (52%), Gaps = 16/394 (4%) Query: 436 EDVDTRIN-KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL- 493 ED+ TR + ++ + S+++ I +++ + IL NR +LFG ++L Sbjct: 194 EDITTRKKVEEALKESAYRFRSLVKTAESVIILLSPDKKILEFNRMAEQLFGRTRHEVLG 253 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFS 551 R + +F+ + N +LS + + LE L EE+++ SL ++ + Sbjct: 254 RDYYELFVPERFWPDHNRQFATVLSGNPLRLLENYVLARGGEERMIQWSLSRLLDAKGGA 313 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 DI+E K+ + +L A+ AE+ S KS+FLA +SHEIRTP++AIIG SE+ Sbjct: 314 LGVLAVGQDITERKRSEVELCEARDAAEEASRAKSEFLANMSHEIRTPISAIIGMSEMTL 373 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 N Y + ++ +L I+ND+LDISKIE+ KM L E +L E + + Sbjct: 374 NTNL----TGEQQGYLVTVKKAAESLLHIINDILDISKIEARKMELRPEDFNLYEMLEKQ 429 Query: 672 ISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 +S++++ A EK I +R + ++++ R D + QI +N++ NAI FT G + +S Sbjct: 430 LSVLKVQAEEKGIELRANVSDDVSRCYHGDEYRLGQIIINLVGNAIKFTEK-GYVEVSVD 488 Query: 731 HTSN--EEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 H + E +L RV+DTG+G++ + EK + F Q+ R G+GLGL +++ +V+ Sbjct: 489 HVGSFEEGAVLEFRVKDTGIGISEDKCEKLFESFVQLNAGYSKRHPGSGLGLAISRQLVE 548 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 MG FS+ +G E F + S +CI Sbjct: 549 M-MGGHITFSSR-EGWGSEFKFTVRLKSSVGECI 580 >gi|167622660|ref|YP_001672954.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis HAW-EB4] gi|167352682|gb|ABZ75295.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis HAW-EB4] Length = 1761 Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 92/251 (36%), Positives = 142/251 (56%), Gaps = 8/251 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L+M +I+ KQ +L AK A+ + KSDFLA +SHEIRTP+ AIIG S++ Sbjct: 1008 LSMANITSLKQLSEELKQAKDSADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTEL 1067 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 N + Y IDR+ +L I+ND+LD SKIE+GK+++ P LD + + + Sbjct: 1068 ----NRKQQNYVLKIDRASKSLLGIINDILDFSKIEAGKLDIESVPFQLDTLLEDLSDMF 1123 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTS 733 + A +KR+ + + A NIPR L D + Q+ +N++SNAI FT G ++ IS Sbjct: 1124 SVKATDKRLELLFAVAPNIPRQLQGDPLRLSQVLINLMSNAIKFTEQGEVLLSISQLERI 1183 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 ++++LR VRD G+G+T + E+ K F Q S + GTGLGL ++K +V+ G+ Sbjct: 1184 EDDIVLRFSVRDNGIGLTEEQRERLFKSFSQADTSTTRKYGGTGLGLAISKQLVELMGGE 1243 Query: 792 FYIFSTPAKGT 802 + S G+ Sbjct: 1244 IGVESQFGNGS 1254 >gi|289627276|ref|ZP_06460230.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650434|ref|ZP_06481777.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330869471|gb|EGH04180.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 778 Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 131/438 (29%), Positives = 226/438 (51%), Gaps = 42/438 (9%) Query: 398 ARLHTIQWNREN-SLAMTFIPFEKANQFPEN--MPQNGIEPEDVDTRINKRKMEI----E 450 AR+H +Q N + +L +P Q PE + Q G + + +R+ + E Sbjct: 215 ARVHQVQRNAQRLALGHPLLP-----QPPEKDEIGQLGTRLVEAGQLLAERERALRDNEE 269 Query: 451 VMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSV 508 ++L I+E D GI ++R G + + N ++ GY ++I+ K F+VF L + P Sbjct: 270 RLRL--IIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQH 327 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEW 564 + L E +++ R T E + K+ ++I + +S DIS+ Sbjct: 328 PDMALREA-TVNGRYTEE--SWRRRKDGSRFWASVVITAQYDGNDELRGFSKITRDISDR 384 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + + L A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ P I Sbjct: 385 RVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMD--SPASQRPQI 442 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +I R+G +L ++N++LDI++IE+G ++L EPVSL + EA+ LV A + I Sbjct: 443 ---GHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLVSPMAADANI 499 Query: 685 LIRTSFANNIPR------ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 ++ +P+ ++AD + + Q+ LN+LSNAI + GQ+ I S+E V Sbjct: 500 ELKA-----LPQLPDKLGVVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQ-SDERVT 553 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V DTG G+ + + KPF ++ + + EGTGLGL L+K+M++ G + +TP Sbjct: 554 VSVIDTGYGIAPERIGQLFKPFERLDANPSV--EGTGLGLALSKSMLEMMHGTLSVQNTP 611 Query: 799 AKGTLIEIIFPLYDTSHP 816 A+G + PL P Sbjct: 612 AEGCRFILELPLVLVHAP 629 >gi|58696692|ref|ZP_00372242.1| sensor histidine kinase [Wolbachia endosymbiont of Drosophila simulans] gi|58698386|ref|ZP_00373299.1| sensor histidine kinase [Wolbachia endosymbiont of Drosophila ananassae] gi|225630987|ref|YP_002727778.1| sensor histidine kinase [Wolbachia sp. wRi] gi|58535099|gb|EAL59185.1| sensor histidine kinase [Wolbachia endosymbiont of Drosophila ananassae] gi|58537134|gb|EAL60244.1| sensor histidine kinase [Wolbachia endosymbiont of Drosophila simulans] gi|225592968|gb|ACN95987.1| sensor histidine kinase [Wolbachia sp. wRi] Length = 475 Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 90/259 (34%), Positives = 146/259 (56%), Gaps = 6/259 (2%) Query: 565 KQEKN--KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 KQ K +L K+ E+E+++K F A V+HE+RTPL AIIGF+E+IKN+ G + + + Sbjct: 218 KQHKTNIELQQIKEALEQENANKLKFFASVTHELRTPLNAIIGFAELIKNETLGSMDDSQ 277 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y EYA+ I +G +L ++ND+LD SK ES + + +L++ + ++++ E Sbjct: 278 YKEYADDIYNAGTHLLALINDVLDFSKAESSSLTVEKVKFNLNKIIDSCVNMLLPKLKEA 337 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVILRV 741 I ++ N ++AD + +KQ+ +N+LSN+I FTP G I ++ + + + Sbjct: 338 GINLKKEMTNKQLLVIADPKRMKQVIINLLSNSIKFTPKDGLIRMVIKENIEKNLLTIEF 397 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D G+G+ ++ K M FGQ + R EGTG+GLPL+K +V+ G F I S G Sbjct: 398 HDNGIGIMQQDIYKVMSVFGQADSGY--RNEGTGIGLPLSKKLVELMGGTFDIKSEAKLG 455 Query: 802 TLIEIIFPLYDTSHPHDCI 820 T I + F Y+ D I Sbjct: 456 TTITLNF-FYEEQTCEDSI 473 >gi|330989302|gb|EGH87405.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 778 Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 131/438 (29%), Positives = 226/438 (51%), Gaps = 42/438 (9%) Query: 398 ARLHTIQWNREN-SLAMTFIPFEKANQFPEN--MPQNGIEPEDVDTRINKRKMEI----E 450 AR+H +Q N + +L +P Q PE + Q G + + +R+ + E Sbjct: 215 ARVHQVQRNAQRLALGHPLLP-----QPPEKDEIGQLGTRLVEAGQLLAERERALRDNEE 269 Query: 451 VMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSV 508 ++L I+E D GI ++R G + + N ++ GY ++I+ K F+VF L + P Sbjct: 270 RLRL--IIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQH 327 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEW 564 + L E +++ R T E + K+ ++I + +S DIS+ Sbjct: 328 PDMALREA-TVNGRYTEE--SWRRRKDGSRFWASVVITAQYDGNDELRGFSKITRDISDR 384 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + + L A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ P I Sbjct: 385 RVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMD--SPASQRPQI 442 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +I R+G +L ++N++LDI++IE+G ++L EPVSL + EA+ LV A + I Sbjct: 443 ---GHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLVSPMAADANI 499 Query: 685 LIRTSFANNIPR------ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 ++ +P+ ++AD + + Q+ LN+LSNAI + GQ+ I S+E V Sbjct: 500 ELKA-----LPQLPDKLGVVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQ-SDERVT 553 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V DTG G+ + + KPF ++ + + EGTGLGL L+K+M++ G + +TP Sbjct: 554 VSVIDTGYGIAPERIGQLFKPFERLDANPSV--EGTGLGLALSKSMLEMMHGTLSVQNTP 611 Query: 799 AKGTLIEIIFPLYDTSHP 816 A+G + PL P Sbjct: 612 AEGCRFILELPLVLVHAP 629 >gi|149174997|ref|ZP_01853621.1| ammonium/methylammonium permease [Planctomyces maris DSM 8797] gi|148846334|gb|EDL60673.1| ammonium/methylammonium permease [Planctomyces maris DSM 8797] Length = 883 Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 85/249 (34%), Positives = 147/249 (59%), Gaps = 8/249 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E +++ +L A AE S KS+FLA +SHEIRTP+TA++G+++++ + +G P Sbjct: 464 ELEEKAERLKQANTDAEAASRAKSEFLANMSHEIRTPMTAVLGYTDLLIEESWG---RPG 520 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 I+ + I R+G+ +L+++ND+LD+SKIESG + + SL E + E SL+++ A + Sbjct: 521 SIQLLDVIKRNGHYLLELINDILDLSKIESGNLTIETIQFSLLEKMKEIQSLMKVRAELR 580 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEV 737 + + SF +P I +D +KQI +N++ NAI F+P GG++ + T+ N + Sbjct: 581 GLHFKLSFEGTLPVEIQSDPTRLKQILINLIGNAIKFSPDGGKVSVETSFLNSSADNPLL 640 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 ++ DTG+GMT ++ +PF Q +S + GTGLGL ++K + + G S Sbjct: 641 EFKISDTGIGMTAEQIAMLYQPFVQADSSTTRKFGGTGLGLAISKRLAEMLGGDLTCESV 700 Query: 798 PAKGTLIEI 806 P +GT+ + Sbjct: 701 PGEGTVFTL 709 >gi|320322879|gb|EFW78970.1| two-component sensor/regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320329812|gb|EFW85800.1| two-component sensor/regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330874310|gb|EGH08459.1| two-component sensor/regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330890506|gb|EGH23167.1| two-component sensor/regulator [Pseudomonas syringae pv. mori str. 301020] Length = 576 Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 109/390 (27%), Positives = 183/390 (46%), Gaps = 34/390 (8%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S++E+ D + + + +GII N+ + L G ++++ P F P+ + + Sbjct: 187 SLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAPCKNFF--TDPASADAAIKR 244 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIII---KKLPFSSCYSLTMHDISEWKQEKNKLS 572 +LS E E ++S + ++ D++E K+ + L Sbjct: 245 VLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFA-AARDVTERKRFERTLE 303 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 E S KS+FLA +SHE+RTPL A+IGFSE +K+ G + + + Y I Sbjct: 304 EKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDAQR-RYIGDIFN 362 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG +L ++ND+LD+SK+E+G M L EPV LDE +S ++ +V+ A +RI ++ Sbjct: 363 SGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQAALQRIQLKLETEA 422 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--VI------------ 738 + + D R KQI N+L+NA+ F+ GG + ++ S + VI Sbjct: 423 DFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSFAQAGVIEGDWPAHTFPLP 482 Query: 739 ---------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 L V DTG+G+ ++ K K F QI + + EGTGLGL + K + + + Sbjct: 483 SSEYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTGLGLAMVKQLTELHG 542 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 G + S G + P+ P +C Sbjct: 543 GCVAVASVKDLGARFVVWLPI----RPPEC 568 >gi|309791782|ref|ZP_07686270.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308226188|gb|EFO79928.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 854 Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 84/240 (35%), Positives = 141/240 (58%), Gaps = 9/240 (3%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L+HA ++ K +FLA +SHE+RTPL AI+G +E+ + +GPL + + + I Sbjct: 472 LAHAARV-------KDEFLANMSHELRTPLNAILGRTEMCLDGFYGPLSDG-ATKALHTI 523 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + SG +L+++ND+LD++KIESG +L + +++DE + ++ L+ A +K I I Sbjct: 524 EESGRHLLELINDVLDVAKIESGHADLELQLIAVDEVCAASLRLISQQALKKHIHINQEI 583 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMT 749 + I AD R +KQI +N+L+NA+ FTP GG I ++ T ++++ V DTG+G+ Sbjct: 584 DPQVDLIHADARRIKQILINLLNNAVKFTPQGGNIGLTVTGDREQDLVHFIVWDTGIGIA 643 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ + +PF QI +S EGTGLGL L ++V + G + ST G+ + P Sbjct: 644 PDQIGRLFQPFTQIDSSLSRAHEGTGLGLHLVASLVRLHGGSVQVESTLGTGSRFSFMLP 703 >gi|209966271|ref|YP_002299186.1| non-motile and phage-resistance protein [Rhodospirillum centenum SW] gi|209959737|gb|ACJ00374.1| non-motile and phage-resistance protein [Rhodospirillum centenum SW] Length = 818 Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 91/242 (37%), Positives = 136/242 (56%), Gaps = 6/242 (2%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN---QRFGPLGNPRYIEYA 627 L AK AE S KS+FLA +SHE+RTPL AIIGF+EV+++ Q+ P+ YA Sbjct: 566 LEQAKAAAELGSRTKSEFLANMSHELRTPLNAIIGFAEVLESELKQQGSPIAKA---GYA 622 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + I SG +L+++ND+LD+SK+E+GK+ L E ++ +V+ A E+RI +R Sbjct: 623 SDIAASGRHLLNLINDILDVSKMEAGKVELRERICDPGELLAGCERIVRARAMERRIDLR 682 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 +P +L D KQI LN+LSNAI FT G + + + + V DTG+G Sbjct: 683 LEVPPGLPPVLVDDVKFKQIVLNLLSNAIKFTAPSGSVRVKVQADPARGLSIAVSDTGIG 742 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +LEK PF Q+ N GTGLGL L++ + + + G+ +I S +GT + Sbjct: 743 IRAEDLEKVFIPFNQVDNIYARINPGTGLGLALSRGLAELHGGQLFIESVFGEGTTATLR 802 Query: 808 FP 809 P Sbjct: 803 LP 804 >gi|309791779|ref|ZP_07686267.1| histidine kinase [Oscillochloris trichoides DG6] gi|308226185|gb|EFO79925.1| histidine kinase [Oscillochloris trichoides DG6] Length = 861 Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 88/277 (31%), Positives = 151/277 (54%), Gaps = 16/277 (5%) Query: 548 LPFSSCYSLTMHDIS-------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 L F+S LT+ ++ + Q +L A + A+ KSDFL +SHE+RTPL Sbjct: 585 LMFASMVGLTIQNVQLYHNLEHQVAQRTEELRAALEKAQLADRRKSDFLTGISHELRTPL 644 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 AIIGFS V+ ++ GPL P E A I+R+G +L ++N+LLD+++IE+G ++L Sbjct: 645 NAIIGFSTVLIDELDGPLA-PMQREDAQSINRNGRFLLHLINELLDLARIEAGHLDLDLG 703 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 V L VSE + +Q ++ + + ++P + AD ++QI N+LSNA+ FT Sbjct: 704 RVDLAPLVSEVLDTMQGLLRSGQVSLNQNLPADLPAVCADADRIRQILFNLLSNAVKFTE 763 Query: 721 SGGQII-------ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 G + I + V++ +RDTG+G+ + + F Q+ + +++R G Sbjct: 764 RGTITVSANLRDEIGPDGNAQSMVVMHIRDTGIGIPANRQHEIFEEFVQV-HDKRLRRRG 822 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 TGLGL + + +V+A+ G ++ S+P +G+ P+ Sbjct: 823 TGLGLAIVRRLVEAHQGHIWVESSPNEGSTFSFSLPI 859 >gi|172038636|ref|YP_001805137.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171700090|gb|ACB53071.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 1082 Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 111/362 (30%), Positives = 194/362 (53%), Gaps = 15/362 (4%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-EQNTPSVMNH 511 + IL+ ++ I I+ + I N A ++FGY E++L + F + + + T + H Sbjct: 465 RFAGILDNANEAIISIDEQQNITLFNHAAEEIFGYTSEEVLGRAFNLLIPSRFTDAHYQH 524 Query: 512 YLTEILSLDLRQTL--EKITLGSTKE--EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567 T + + + + + G K+ E L + I KL + ++ + DI+E KQ Sbjct: 525 IKTFQHTAETARQMGGRRPVFGQRKDGTEFLAEVSISKIKLRGKTIFTAIIRDITERKQA 584 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + L AK+ A+ + KS+FLA +SHE+RTPL AI+GF++V+ QR L + + Sbjct: 585 EEALKQAKEQADAANRAKSEFLASMSHELRTPLNAILGFTQVM--QRDHSLKG-EHRQNL 641 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + I RSG +L+++ND+L+++KIE+G+ + L + S++ L A EK + + Sbjct: 642 DIIGRSGEHLLELINDILEMTKIEAGRTTFNQTQFDLYRLLDNLESMLHLKAEEKNLQLL 701 Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTS--NEEVIL--RV 741 ++P+ I D ++Q+ +N+L NAI FT GG I+ I T H++ N +IL + Sbjct: 702 FEKNPDLPQYIETDEGKLRQVLINLLGNAIKFTQEGGVILRIKTNHSTDQNPTIILTFEI 761 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG G+ E+ + + FGQ + EGTGLGLP+++ V+ G+ + S +G Sbjct: 762 EDTGPGIAAEEVNQLFEAFGQTETGRN-SNEGTGLGLPISRKFVELMGGEITVSSILGRG 820 Query: 802 TL 803 +L Sbjct: 821 SL 822 >gi|261210923|ref|ZP_05925213.1| hypothetical protein VCJ_001178 [Vibrio sp. RC341] gi|260839898|gb|EEX66498.1| hypothetical protein VCJ_001178 [Vibrio sp. RC341] Length = 1324 Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 117/379 (30%), Positives = 197/379 (51%), Gaps = 26/379 (6%) Query: 441 RINKRKMEIEVMQLCS-ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFT 498 R+ +RK+ +E QL IL+AT + + +N EG+ L+ N L G ++++ K P+ Sbjct: 461 RLAERKV-LEQSQLNQEILDATPNPMYCLNPEGLYLTVNAKFLDLVGLARQEVIGKSPYD 519 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 +F TP+ + +L L+QT +++L K E+ +++ + F Sbjct: 520 IF----TPAASQCFSEAHRALALQQTSRNYEVSLLDQKGEQR---ELLVYEASFGDQREQ 572 Query: 557 T------MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + D++E K+ + +L AKK+A+ S K DFLA +SHEIRTP+ AI+G + + Sbjct: 573 VHGIVGILLDLTERKRMEEELRDAKKMADAMSQAKGDFLANMSHEIRTPMNAILGMAHLA 632 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 N PL + +Y I+ S +L I+ND+LD SK+E+GK+++ +LD+ + Sbjct: 633 LNT---PLDTTQR-KYVTRINESAKNLLGIINDILDFSKMEAGKLHVERIDFNLDDVLDN 688 Query: 671 AISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 IS++ L A EK I +IP ++ D + Q+ +N+ NA+ FT G +I + Sbjct: 689 LISVISLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTHQGEIVISAR 748 Query: 730 THTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 NE+ + V+DTG+G+T +L F Q NS + GTGLGL ++K +V+ Sbjct: 749 VRQLNEQQVTLFFAVKDTGIGITQEKLAGLFNAFSQADNSITRQYGGTGLGLSISKQLVE 808 Query: 787 ANMGKFYIFSTPAKGTLIE 805 G+ S KG+ E Sbjct: 809 LMGGEISAHSEEGKGSTFE 827 >gi|189423669|ref|YP_001950846.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419928|gb|ACD94326.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 957 Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 115/360 (31%), Positives = 184/360 (51%), Gaps = 18/360 (5%) Query: 468 INR--EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 +NR +G L N + + GY E++L K P+ + E+ + L Sbjct: 461 LNRLSDGTYLEVNEGFTAIAGYQPEEVLGKSSLELNIWANPADRLQLVQELQQHGFVRNL 520 Query: 526 E---KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 E + GS ++ S RII + C DISE K+ + +L A++ AE + Sbjct: 521 EAQFRCKDGSLITGQM-SARII--TVNGEQCLLNITRDISERKRYEEELQQARQAAEAAN 577 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 KS+FLA +SHEIRTP+ +IG ++++ R N EY ++ S +L ++N Sbjct: 578 RAKSEFLANMSHEIRTPMNGVIGMVQLLQFTRL----NSEQQEYLQCLETSAQNLLSLLN 633 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADL 701 D+LD+SKIE+GK++L + SL ++ E ++ ++KR+ + TS A++IP IL D Sbjct: 634 DILDLSKIEAGKISLEYADFSLRHSIQEVVTTQISQIHQKRLKLTTSLADDIPEILHGDP 693 Query: 702 RSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 +KQI LN+L NAI FT +G I I+ + L V DTG+GMT L++ Sbjct: 694 LRLKQILLNLLGNAIKFTAAGSITIAARITDQQNGTLTICLSVSDTGIGMTPEALQRIFA 753 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT--LIEIIFPLYDTSHP 816 PF Q NS R GTGLGL + + + + G+ + S+ G+ +E+ F + + P Sbjct: 754 PFEQADNSTTRRFGGTGLGLTICRRLAELMGGRIWAESSDGHGSSFFVELPFAVRMQTAP 813 >gi|301167704|emb|CBW27287.1| putative histidine kinase/response regulator fusion protein [Bacteriovorax marinus SJ] Length = 628 Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 114/377 (30%), Positives = 186/377 (49%), Gaps = 30/377 (7%) Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 G++ E + R N K++ SI T D +I+ G I S N + KLFG ++ Sbjct: 128 GVKKEAMVNRKNHAKLQ-------SIFRTTPDAFFVIDSSGRIESVNDKLIKLFGLSEKE 180 Query: 492 ILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 +L +L+ + ++ E S D R I +G + E L L II+ Sbjct: 181 LLGTNIDKYLKVDVTKLVGETEELEFTSKDGRVVPISINVGEARTEDGLYLTGIIR---- 236 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 DISE K+ + +L ++ A KS FLA +SHEIRTP+ I+G + ++ Sbjct: 237 ---------DISEQKKYQRELEDSRNKALAAEKAKSLFLANMSHEIRTPMNGILGMASLL 287 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 K+ PL E + I+ G+ +L I+ND+L SKIESGK+++ +L ++V + Sbjct: 288 KDTSLNPLQE----EMLSIINSCGDSLLTIINDILSFSKIESGKLSIEKVSFNLKKSVED 343 Query: 671 AISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 SL+ A+EK I I + N+IP+ L +D+ +KQI N+LSNA+ F+P ++ + Sbjct: 344 VTSLIANIASEKGITIHSKIDNSIPQFLKSDIVRLKQIITNLLSNAVKFSPDEEKVFLDI 403 Query: 730 THTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 T +V+ V+D G+GM+ E + + F Q + GTGLGL ++ + Sbjct: 404 KLTGCNGNIVKVLFSVKDNGIGMSEEEQSRLFQEFTQADEGVTRKFGGTGLGLSISSKLA 463 Query: 786 DANMGKFYIFSTPAKGT 802 GK + S +G+ Sbjct: 464 KLLGGKIKVESRKGEGS 480 >gi|124265292|ref|YP_001019296.1| signal transduction histidine kinase-like protein [Methylibium petroleiphilum PM1] gi|124258067|gb|ABM93061.1| signal transduction histidine kinase-like protein [Methylibium petroleiphilum PM1] Length = 938 Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 86/253 (33%), Positives = 154/253 (60%), Gaps = 5/253 (1%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T D+ E +Q ++LS + AE+ S KS+FL+RVSHE+RTPL I+GF++++ Sbjct: 539 TCRDVHE-QQLADELSRGMQEAERASRAKSEFLSRVSHELRTPLNGILGFTQLMALDEDH 597 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL P+ A+ + R+GN +L+++ND+L+IS+IES ++ + V LD A+ ++SLVQ Sbjct: 598 PLAAPQAQRLAS-VQRAGNRLLNLINDVLEISRIESAEVAVRTLAVDLDAALHASLSLVQ 656 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A + I I + + + + D R+++Q+ +N+LSNAI ++ ++++ S+ Sbjct: 657 SLARGRSITIEPTPPSGL-WVSGDERALEQVLVNLLSNAIKYSGEQSPVVLN-LQRSDGT 714 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V + VRD GVG+T + + +PF ++ +++ R EG+GLGL +A+ + +A G+ + S Sbjct: 715 VKIAVRDRGVGLTAEQQARLFQPFDRL-GAERRRIEGSGLGLVIARQLAEAMGGRIDVVS 773 Query: 797 TPAKGTLIEIIFP 809 P G+ + P Sbjct: 774 VPGAGSTFTLQLP 786 >gi|149176849|ref|ZP_01855459.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] gi|148844286|gb|EDL58639.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] Length = 818 Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 84/258 (32%), Positives = 155/258 (60%), Gaps = 7/258 (2%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 S + DI+ K+ + L +++ A + + KS+FLA +SHEIRTP+ A++G+++V+ Sbjct: 391 SSIVQDITARKEMEEALRDSEQQASQANLAKSEFLANMSHEIRTPMAAVLGYADVL---- 446 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 G L +P + R+G +L+++ND+LD+S+IE+GK+ + SL E V++ +L Sbjct: 447 LGHLKDPDNRNCVMIMKRNGEHLLELINDILDLSRIEAGKLEVDLNEASLRELVADVQTL 506 Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHT 732 +Q+ A+EK +++ F +P +I+ D ++QI +N++ NAI FT G +++I Sbjct: 507 MQVRADEKNLMLNVKFTGQVPEKIVTDATRLRQILINLIGNAIKFTDQGEVRLVIRLLPD 566 Query: 733 SNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 S++ +I V+DTG+GM+ ++++ KPF Q +S G+GLGL ++K +V G+ Sbjct: 567 SDKPIIEFAVQDTGIGMSADQIQRLFKPFSQGDSSVTRAYGGSGLGLAISKRLVQMLKGQ 626 Query: 792 FYIFSTPAKGTLIEIIFP 809 + S +G++ I P Sbjct: 627 LKVKSEVGQGSIFRIRLP 644 >gi|298675091|ref|YP_003726841.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288079|gb|ADI74045.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 996 Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 114/367 (31%), Positives = 187/367 (50%), Gaps = 29/367 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-------------KPFTVFLE 502 ++ E +D I + +G I+ N + GY E++L P TV+ E Sbjct: 644 TLTEQAADAIIAHDFDGNIVYVNNLACENLGYSKEELLSMNIADISAYINSYDPKTVYWE 703 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562 + +PS + YL E LR+ GS ++ RI +K S + +I+ Sbjct: 704 KLSPS--DSYLVET---KLRRKD-----GSYYPAEVKLTRIDLKG---RSVILGFVREIT 750 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 KQ + L ++K AE S KS+ LA VSHE+RTPLT+IIGFS+++ + G L N Sbjct: 751 IRKQAEESLINSKLEAEAASQAKSELLANVSHELRTPLTSIIGFSDILLKGKLGDL-NES 809 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y + + RSG +LD++ D+LD+SKIESGK LH E VS+ + + + + +A++K Sbjct: 810 QKTYLSKVHRSGKHLLDLITDILDLSKIESGKHELHCEKVSIPQLMKDLKENIYPFASQK 869 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + I +I I AD ++QI N++ NA+ FT G + ++ +++ V Sbjct: 870 GLEINIDINRSIEYIYADKIKLRQILYNLVYNAVKFTEQGS--VTVKLDWNDNDMLFSVI 927 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ + ++ F Q+ + R GTGLGL L + +V+ + GK ++ S +G+ Sbjct: 928 DTGIGIPADKQDEIFDSFKQLDSGASRRYSGTGLGLALVERLVEMHGGKIWVESEEREGS 987 Query: 803 LIEIIFP 809 I P Sbjct: 988 RFSFIIP 994 >gi|257059466|ref|YP_003137354.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] gi|256589632|gb|ACV00519.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] Length = 442 Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 86/256 (33%), Positives = 148/256 (57%), Gaps = 4/256 (1%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 ++T+H I ++ K+ S +++ K S +KSD+L+ ++HE+RTPLT I+GF+++++ + Sbjct: 185 AITIHQIQLEERLKDLESENQRL-HKTSQNKSDYLSHINHELRTPLTGILGFAKMLREEL 243 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 +GPL N + +Y N I SG +L +VND LD+SKIE+ + + E +++++ AIS+ Sbjct: 244 YGPL-NEKQKQYINGIAVSGEHLLALVNDFLDLSKIEAEREEIFLETIAVEDICLSAISI 302 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 V A E+ I + N+ D R +KQI LN+LSNAI FT G + + Sbjct: 303 VDSKAKEQGINLIIEIGENVDFCTVDQRRIKQILLNLLSNAIKFTEKGS--VTLAVKSDR 360 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E + + DTG+G+ + +K +PF QI + + +GTGLGL L++ + + G + Sbjct: 361 EMLTFCIIDTGIGIKQDDQKKLFEPFQQIQSHLSRKHKGTGLGLTLSRKLAQLHGGDLTL 420 Query: 795 FSTPAKGTLIEIIFPL 810 S KG+ + P+ Sbjct: 421 TSEMGKGSCFTLHIPI 436 >gi|218246423|ref|YP_002371794.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 8801] gi|218166901|gb|ACK65638.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 8801] Length = 442 Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 86/256 (33%), Positives = 148/256 (57%), Gaps = 4/256 (1%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 ++T+H I ++ K+ S +++ K S +KSD+L+ ++HE+RTPLT I+GF+++++ + Sbjct: 185 AITIHQIQLEERLKDLESENQRL-HKTSQNKSDYLSHINHELRTPLTGILGFAKMLREEL 243 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 +GPL N + +Y N I SG +L +VND LD+SKIE+ + + E +++++ AIS+ Sbjct: 244 YGPL-NEKQKQYINGIAVSGEHLLALVNDFLDLSKIEAEREEIFLETIAVEDICLSAISI 302 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 V A E+ I + N+ D R +KQI LN+LSNAI FT G + + Sbjct: 303 VDSKAKEQGINLIIEIGENVDFCTVDQRRIKQILLNLLSNAIKFTEKGS--VTLAVKSDR 360 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E + + DTG+G+ + +K +PF QI + + +GTGLGL L++ + + G + Sbjct: 361 EMLTFCIIDTGIGIKQDDQKKLFEPFQQIQSHLSRKHKGTGLGLTLSRKLAQLHGGDLTL 420 Query: 795 FSTPAKGTLIEIIFPL 810 S KG+ + P+ Sbjct: 421 TSEMGKGSCFTLHIPI 436 >gi|89901133|ref|YP_523604.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] gi|89345870|gb|ABD70073.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] Length = 602 Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 110/370 (29%), Positives = 197/370 (53%), Gaps = 23/370 (6%) Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 G ++ G+IL N + L G P ++++P + F+ ++ + Y +++ Q Sbjct: 99 GYITVSDAGMILEANLTAATLLGVPRSALVKRPISRFIVKSQQDIYYQYRKQLVETGQAQ 158 Query: 524 TLEKITLGSTKEEKLLSLRIII-KKLPFSSCYSLTMHDISEWK------QEKN-KLSHAK 575 T E L S +SL + ++ ++ + ++DISE K +E N KL A Sbjct: 159 TCELQVLHSEGSALWVSLAATVAQETDGATILRIVLNDISERKLLDQSLRETNVKLESAL 218 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 +A+K + KS+FL+ +SHE+R+PL A++GF+++I+ P P I R G Sbjct: 219 FLADKANLAKSEFLSGMSHELRSPLNAVLGFAQLIETGTPAP--TPGQQASLEQILRGGW 276 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NI 694 +L ++N++LD+S +ESGK++L EPV L E S+ +++ A ++ IR SFA+ + Sbjct: 277 YLLTLINEILDLSLVESGKLSLSMEPVLLSEKFSDCRAMIDPQA--QKAGIRVSFASFDS 334 Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 P + AD +KQ+ +N+LSNAI + +GG + ++ + + + + V DTG G+++ +L Sbjct: 335 PCFVEADRTRLKQVIVNLLSNAIKYNRAGGSVEVTCSTPAAGRIRISVIDTGPGLSDNKL 394 Query: 754 EKAMKPF---GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + +PF GQ +Q EGTG+GL + K +V+ G+ + S G+ E F L Sbjct: 395 AQLFQPFNRLGQEAGTQ----EGTGIGLVVCKRLVEMMGGEIGVHSRVGIGS--EFWFEL 448 Query: 811 YDTSHPHDCI 820 + P + Sbjct: 449 KLAAPPPTAV 458 >gi|159897998|ref|YP_001544245.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159891037|gb|ABX04117.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 1380 Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 85/248 (34%), Positives = 143/248 (57%), Gaps = 2/248 (0%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q+ ++LS A K + K +FLA +SHE+RTPLT I+ F+E ++ ++G L Sbjct: 873 QQQTDELSIANAELAKAARLKDEFLASMSHELRTPLTGILAFTEALRYDQYGALNQ-AQA 931 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + ID + +LD++ND+LD+SKIE+GK+ ++ + + +DE +I +VQ A K++ Sbjct: 932 QALQQIDENSRHLLDLINDILDLSKIEAGKLTINHQSMLIDEICQASIRMVQKLAQNKQL 991 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRD 743 + + AD R +KQ+ +N+LSNA+ FTP+GG+I +S S +V L V D Sbjct: 992 ELLYEPCAADAMLCADSRRLKQMLVNLLSNAVKFTPAGGRIGLSVKLDSQFHQVELTVWD 1051 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ ++ K +PF Q+ + + GTGLGL L M + + G+ + S G+ Sbjct: 1052 TGIGINTQDIPKLFRPFSQLDSKLSRQYAGTGLGLALVYHMANLHGGRVELQSEVGVGSQ 1111 Query: 804 IEIIFPLY 811 ++ P Y Sbjct: 1112 FRLVLPWY 1119 >gi|209528424|ref|ZP_03276859.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira maxima CS-328] gi|209491140|gb|EDZ91560.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira maxima CS-328] Length = 705 Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 109/366 (29%), Positives = 178/366 (48%), Gaps = 14/366 (3%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPFTVFLEQNT-PSVMNHYL 513 SI E ++GI +G +S N A++++ GY ED++ V + P+ ++ Sbjct: 308 SIFENAAEGICQTTPDGRYISANPALARILGYDSPEDLIANLTDVSTQLYVKPTRRAEFV 367 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 I + E +S R + + CY T+ DI+E K L Sbjct: 368 AAIAKSSVISGFESQVYRQDGTTIWISENARAVFDAMGELVCYEGTVEDITEGKTAAEAL 427 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 AK+ AE + KS FLA +SHE+RTPL AIIG+SE++ ++ LG + I Sbjct: 428 ERAKEAAETANRAKSTFLANMSHELRTPLNAIIGYSEIL-SEEAEELGYEDIVPDLERIY 486 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 +G +L ++ND+LDISKIE+G+M+L E + + + Q ++ + Sbjct: 487 TAGKNLLTLINDILDISKIEAGRMDLFLEAFDISSLLESVMGTAQPLMSKNNNTLTVDCP 546 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--------EEVILRVRD 743 +NI + AD+ V+QI LN+LSNA FT + G+I + + S+ + +V D Sbjct: 547 DNIGIMYADVTKVRQILLNLLSNAAKFT-TNGKIKLEVSRVSSLPYSQESGSVLEFKVHD 605 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+GM+ + E+ +PF Q S R GTGLGL ++ G + ST +G+ Sbjct: 606 TGIGMSQEQQEQLFQPFTQGDASTTRRYGGTGLGLAISDRFCQMMGGNIQVESTLGEGST 665 Query: 804 IEIIFP 809 +++ P Sbjct: 666 FKVVIP 671 >gi|158339144|ref|YP_001520321.1| sensory transduction histidine kinase [Acaryochloris marina MBIC11017] gi|158309385|gb|ABW31002.1| sensory transduction histidine kinase, putative [Acaryochloris marina MBIC11017] Length = 551 Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 81/248 (32%), Positives = 140/248 (56%), Gaps = 2/248 (0%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 ++++Q +L E+ + K +FL+ +SHE+RTPLTAIIG +EV++ + +G L NP Sbjct: 165 AQYRQLSEQLVIVNAALERAAGLKDEFLSTMSHELRTPLTAIIGLAEVLREEVYGSL-NP 223 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + ++ I+ SG +L +NDL+D+SKIESG + L VS+ V +++V+ A + Sbjct: 224 KQLKSVCTIEESGETLLTQLNDLIDLSKIESGNLVLERRRVSISALVESCLAMVRPQAQK 283 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + I + ++ + D ++Q+ N++SNA+ FTP GG + + T E+V +RV Sbjct: 284 QNITLSHHIPTDLAEVTGDELRLRQVLQNLISNALKFTPQGGAVSVQAT-ADTEQVQVRV 342 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ +L +PF Q+ +S GTGLGL L + ++ + G + S G Sbjct: 343 TDTGIGIATADLANIFEPFVQLDSSWARPYPGTGLGLTLVQRLIHLHGGTVQVESEVGSG 402 Query: 802 TLIEIIFP 809 + + P Sbjct: 403 STFIVTLP 410 >gi|320354148|ref|YP_004195487.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320122650|gb|ADW18196.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 900 Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 112/374 (29%), Positives = 187/374 (50%), Gaps = 20/374 (5%) Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 + V++L +I A+ GI I+ R G I++ N+ +S +FGY E+IL F Sbjct: 363 VSVLELETIFSASLVGI-ILVRMGKIINVNKRMSDIFGYSREEILSGDIRQFFSDRQS-- 419 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLP---FSSCYSLTMHDISEW 564 H++ E L L +E+I K++ L+ + K + + + DIS Sbjct: 420 FRHFVREHLHLLAEGDVEQIEYQLKKKDGSLIPCTLSGKAISPQDLAKGTVWVIEDISRR 479 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K + +L HA++ AE S KS+FLA +SHEIRTP+ IIG S ++ + L Sbjct: 480 KAVEKELYHAREAAETASIAKSEFLANMSHEIRTPMNGIIGLSNILLREDLPDLQR---- 535 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I RS ++ I+ND+LD SK+E+G+ L SL ++E I ++ A K + Sbjct: 536 QQLELIHRSAIRLMIIINDILDFSKLEAGRFELEQRLFSLRNLLNEVIQPMEPTAQRKNL 595 Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-------TSNEE 736 + A N+P +L D + Q+ N++ N++ FT GQI ++ ++ + + Sbjct: 596 RLHLIVAPNVPDMLVGDQTKIMQVLTNLIDNSLKFT-RKGQITLTVSNQPSPNSFANGDM 654 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 ++ V DTG+G+ +K + F Q +S R GTGLGL ++K +V+ G+ + S Sbjct: 655 LLFEVADTGIGIAPTYYDKVFESFSQADSSHSRRFGGTGLGLSISKGLVELMGGRIWFES 714 Query: 797 TPAKGTLIEIIFPL 810 AKGT P+ Sbjct: 715 ELAKGTRFSFTLPI 728 >gi|261405183|ref|YP_003241424.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10] gi|261281646|gb|ACX63617.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10] Length = 642 Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 111/372 (29%), Positives = 198/372 (53%), Gaps = 30/372 (8%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 D+++ ++K++ + + S+ + D I N EG I++ N+ +L G+ + +++ + Sbjct: 125 DSKVAEQKLQESIERYTSLKKYNHDAIISFNLEGRIINGNQMAEQLTGFKIPELIGTKIS 184 Query: 499 VFL-EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE----EKLLSLRIII---KKLPF 550 + E+N V++ + D + I K+ E L +L I+ K + F Sbjct: 185 NLIGERNLARVLSS------AADYVAAEKGINCIHHKDGHQVEVLATLAPIVIHGKNVGF 238 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + I++ E+ +L K+ AEK + KS+FLA +SHEIRTP+ +IG +++I Sbjct: 239 --------YIIAKDMTEQKRLIIEKEAAEKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLI 290 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + EY I +SG +L+I+ND+LD SKIESG+ L E SL A+SE Sbjct: 291 LETEL----DEEQREYVQIIKKSGTTLLNIINDILDFSKIESGRTELVEETFSLRTALSE 346 Query: 671 AISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII-- 727 ++++ A +K I + TS A+++P ++ D+ ++Q+ +N+LSNAI FTP+G I Sbjct: 347 TLNMILPKALDKNIEVTTSVASDVPNQVYGDVTKLRQVLMNLLSNAIKFTPNGAVSISVQ 406 Query: 728 STTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 +N ++I V DTG+G+ + ++ + +PF Q+ + + EGTGLGL + K +V Sbjct: 407 CVRDQANSKLIQFSVTDTGIGVPSEKIAQLFEPFYQVDHYMTRQVEGTGLGLAICKKLVQ 466 Query: 787 ANMGKFYIFSTP 798 G + P Sbjct: 467 LMGGDIWYERNP 478 >gi|262196389|ref|YP_003267598.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262079736|gb|ACY15705.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 765 Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 138/247 (55%), Gaps = 8/247 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E Q+ L AK+ AE S KSDFLA +SHEIRTPL +IG + ++ + Sbjct: 363 DVTERHQQSELLREAKEAAEVASRVKSDFLATMSHEIRTPLNGVIGMASLLLDTEL---- 418 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + EYA ID SGNL+L ++ND+LD SKIE+G+M L L + E +++V A Sbjct: 419 SDEQREYAETIDVSGNLLLALINDILDFSKIEAGRMELEEVAFELRYLIEETLAIVAPRA 478 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV 737 EK + + +P R++ D + ++Q+ LN++ NAI FT G +I + + + Sbjct: 479 REKNLSLDWQAEAAVPRRVIGDAQRMRQVLLNLVGNAIKFTHDGSVEIRVRVREREGDAL 538 Query: 738 ILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +L V DTG+G++ E+ + +PF Q S + GTGLGL + K +VD G + Sbjct: 539 LLEVAVADTGIGISPGEMMRIFEPFSQADASTTRQYGGTGLGLAICKRLVDRMGGTVVVK 598 Query: 796 STPAKGT 802 S P +G+ Sbjct: 599 SQPGRGS 605 >gi|163845997|ref|YP_001634041.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222523722|ref|YP_002568192.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163667286|gb|ABY33652.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222447601|gb|ACM51867.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 1347 Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 87/277 (31%), Positives = 154/277 (55%), Gaps = 20/277 (7%) Query: 558 MHDISEWKQEKNKLS-----HAKKIAEK-------------ESSHKSDFLARVSHEIRTP 599 + D++ W+ + L A+++AE+ + K +FLA +SHE+RTP Sbjct: 804 VRDVTAWRNAELALQVERDLLAQRVAERTAELHRANAELLRAARTKDEFLANMSHELRTP 863 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 L +I+ SE + + +GPL + + + I+ SG +L ++ND+LD++KIE+ ++ L Sbjct: 864 LNSILALSESLLEELYGPLRDQQQ-KAIRAIEASGRHLLALINDVLDLAKIEANRIELVK 922 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 E V+ + +++LV+ A +K+I + + R +AD R +KQI +N+LSNA+ FT Sbjct: 923 EVVAASDVCEASMALVKEQATKKQIHLSIQLDDPHARFVADPRRLKQILVNLLSNAVKFT 982 Query: 720 PSGGQIIIS-TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 P+GG + + TT T+ + V DTG+G+ +L + +PF Q+ + + EGTGLGL Sbjct: 983 PAGGAVSLQVTTDTTQGTIAFTVSDTGIGIAEEDLSRLFQPFVQLDSGLSRQHEGTGLGL 1042 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 L + +V+ + GK + S P G+ + P +H Sbjct: 1043 VLVRRLVELHGGKVEVESMPGVGSRFTVTLPYQPVTH 1079 >gi|258404324|ref|YP_003197066.1| histidine kinase [Desulfohalobium retbaense DSM 5692] gi|257796551|gb|ACV67488.1| histidine kinase [Desulfohalobium retbaense DSM 5692] Length = 810 Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 84/253 (33%), Positives = 148/253 (58%), Gaps = 8/253 (3%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 LS AK+ AE+ + KSDFL+ +SHEIRTP+ A++G S++++ + R +Y Sbjct: 420 LSKAKEEAERANRAKSDFLSGLSHEIRTPMNALLGASDLLEKTEL----DARQRKYLRMG 475 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG +L ++ +LLD++++E G++ L E SL++ V EAI +V+L A EK +++ Sbjct: 476 KSSGKTLLSLITNLLDVARLERGRLQLAREVFSLEQMVQEAIDVVELAAQEKGLILNKKI 535 Query: 691 ANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 A + L D ++QI +N+L+NA+ FTP G ++++ T V+ RV DTG G+ Sbjct: 536 ALAVRGTYLGDPVRLRQILVNLLNNAMKFTPQG-RVLVEVTPAEQTGVLFRVSDTGEGIP 594 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 LE +PF Q+ +S + G+GLGL +++ +++A G+ ++ S +G+ + P Sbjct: 595 QESLETIFEPFSQLDSSSGLPNSGSGLGLAISRQLLEAMGGRIWVESRLGRGSDFFFLVP 654 Query: 810 L--YDTSHPHDCI 820 L D++ P + Sbjct: 655 LERTDSAAPATVV 667 >gi|85859338|ref|YP_461540.1| phosphate regulon sensor protein [Syntrophus aciditrophicus SB] gi|85722429|gb|ABC77372.1| phosphate regulon sensor protein [Syntrophus aciditrophicus SB] Length = 583 Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 112/363 (30%), Positives = 185/363 (50%), Gaps = 32/363 (8%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT-VFLEQNTPSVMNH 511 +L S L + +G+ I++ I S N+A+ + P +I K FL + + ++ Sbjct: 242 KLESALASMVEGVVILDSRNRIESCNQAIEAILERPETEIREKTLLEAFLNADLQNALDR 301 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYS-LTMHDISEWKQEKN 569 + ++ + L++I LG K+ +++ + I IK LP + L HD++ K Sbjct: 302 F-----RMERKPVLQEIRLGR-KDPRVVDVSISAIKDLPDGVEKTMLVFHDVTRLK---- 351 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 K ++DF+A V+HEI+TPLTAIIGF + + + R ++ Sbjct: 352 ----------KLEQIRTDFVANVTHEIKTPLTAIIGFLQTLLDGALDDRETAR--KFLQT 399 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I + + +V+DLL +S IE + +LH EP+S+D + + +V A K IL+ Sbjct: 400 IATNAERLSRLVDDLLTLSSIELNETSLHLEPLSVDVLIRSILPMVNADAKAKNILLNVD 459 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTG 745 ILAD QI +N+L NA+ FTP+GG I T S EE VI++V DTG Sbjct: 460 LPEAFLNILADRDRAAQILMNVLHNAVKFTPAGG---IVTVSGSEEEKGNFVIIQVVDTG 516 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ E+ + + F ++ ++ GTGLGL + K ++ A+ GK I STP KGT++ Sbjct: 517 IGIPPREIPRLGERFYRVDKARSRELGGTGLGLSIVKHLMAAHGGKMRIESTPGKGTIVS 576 Query: 806 IIF 808 + F Sbjct: 577 LFF 579 >gi|330504864|ref|YP_004381733.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] gi|328919150|gb|AEB59981.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] Length = 1238 Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 108/381 (28%), Positives = 193/381 (50%), Gaps = 18/381 (4%) Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 + RK+ E +L ++EA+ + I +++ G I NR LFGY + +L +P + L Sbjct: 457 LRARKVAEERFRL--VVEASPNAILLVDGLGRIAMVNRQTEVLFGYERQMLLGEPVEMLL 514 Query: 502 --EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYS 555 Q V + + R + G +E +++ L + + P S Sbjct: 515 PAAQRGSHVALRRGYQAMPEQRRMGGNRELFGLHREGRMIPLEVGLS--PIRSGDENLVQ 572 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + DISE K + KL + + +KS+FLA +SHE+RTPL +I+ S+ ++ Sbjct: 573 AVIIDISERKAAEQKLREQAEQLLLANRYKSEFLANMSHELRTPLNSILILSDQLRQNLA 632 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L + ++A+ + R+G+ +L ++ND+LD++K+ESG+M L EP+++ + + E + + Sbjct: 633 GNL-TEKQTKHADIVHRAGSDLLQLINDVLDLAKVESGRMQLKLEPINMQDVLVELDASL 691 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 + A K + + T +PRI+ D + QI N+LSNA+ FT G + +S + Sbjct: 692 RPMAELKGLRLHTQLEAGVPRIIHTDRVRLHQILRNLLSNALKFT-DHGDVTLSVSSQGR 750 Query: 735 EE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 +E + VRD+G+G+ + E+ + F Q+ S R GTGLGL + + +V A Sbjct: 751 QEDERELLCFSVRDSGIGIDPAQHEQIFQAFQQLDGSTSRRFGGTGLGLAITRQLVLALD 810 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G + S P G+ + P+ Sbjct: 811 GDISLQSAPGLGSTFTVRLPV 831 >gi|330962181|gb|EGH62441.1| two-component sensor/regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 576 Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 105/381 (27%), Positives = 179/381 (46%), Gaps = 30/381 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S++E+ D + + + +GII N+ + L G ++++ P F P+ + + Sbjct: 187 SLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAPCKNFF--TDPASADAAIKR 244 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIII---KKLPFSSCYSLTMHDISEWKQEKNKLS 572 ++S E E ++S + ++ D++E K+ + L Sbjct: 245 VISEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFA-AARDVTERKRFERTLE 303 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 E S KS+FLA +SHE+RTPL AIIGFSE +K+ G + + + Y I Sbjct: 304 EKNIELEHASHMKSEFLATMSHELRTPLNAIIGFSEALKDGMVGDMSDAQR-GYIGDIFN 362 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG +L ++ND+LD+SK+E+G M L EPV LDE +S ++ +V+ A +RI ++ Sbjct: 363 SGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQAALQRIQLKLETDA 422 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---------------- 736 + + D R KQI N+L+NA+ F+ GG + +S + + Sbjct: 423 DFGLLELDRRKTKQIVYNLLANAVKFSAPGGWVTLSVRQVPSAQAGVLEGDWPTHVFPVP 482 Query: 737 -------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + L V DTG+G+ ++ K K F QI + + EGTGLGL + K + + + Sbjct: 483 PGDYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTGLGLAMVKQLAELHG 542 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G + S G + P+ Sbjct: 543 GSVAVASVKDLGARFVVWLPI 563 >gi|88858301|ref|ZP_01132943.1| hypothetical protein PTD2_12964 [Pseudoalteromonas tunicata D2] gi|88819918|gb|EAR29731.1| hypothetical protein PTD2_12964 [Pseudoalteromonas tunicata D2] Length = 884 Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/259 (33%), Positives = 146/259 (56%), Gaps = 5/259 (1%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + ++L A AE+ S KS FLA +SHEIRTPLTAI+GF+E Q + + Sbjct: 387 ELAKMNHQLEKAMNQAEQASQLKSRFLANMSHEIRTPLTAIMGFTE----QMLTKEPDDK 442 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 ++ N + R+ +L+++N++LD+SKIE+ K+ + +P+ L + + + S+V + A +K Sbjct: 443 KAQHLNTVLRNSKHLLELINNILDLSKIEAEKLEVERQPLELSQLIEDINSVVHVLAQDK 502 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + + +PR L +D+ +KQ+ LN+ +NA+ FT G + + S ++ +V Sbjct: 503 NLTFAVEYDYPLPRTLNSDITRLKQVLLNVCTNAVKFTAEGSVTLAISAKHSLSQLEFKV 562 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +DTG+GM+N ELE+ KPF Q +S + GTGLGL ++K + G + S +G Sbjct: 563 QDTGIGMSNQELERIFKPFEQADSSTTRKFGGTGLGLCISKNLAQLLGGDITVTSKQTQG 622 Query: 802 TLIEIIFPLYDTSHPHDCI 820 + I ++ P D I Sbjct: 623 SCFLITVACHNEHIPVDII 641 >gi|58584388|ref|YP_197961.1| membrane associated signal transduction histidine kinase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418704|gb|AAW70719.1| Membrane associated signal transduction histidine kinase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 475 Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 90/259 (34%), Positives = 144/259 (55%), Gaps = 6/259 (2%) Query: 565 KQEKN--KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 KQ K +L K+ E+E+++K F A V+HE+RTPL AIIGF+E+IKN+ G + N + Sbjct: 218 KQHKTNIELQQMKEALEQENTNKLKFFASVTHELRTPLNAIIGFAELIKNETLGSMDNYQ 277 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y EY + I +G +L ++ND+LD SK ES + + +L++ + ++++ E Sbjct: 278 YKEYVDDIYNAGTHLLALINDVLDFSKAESSSLTVEKVKFNLNKIIDSCLNMLSPKLKET 337 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVILRV 741 I + N ++AD + +KQ+ +N+LSN+I FTP G I ++ + + + Sbjct: 338 GISLEKEIPNRQLLVIADPKRMKQVIINLLSNSIKFTPKDGLIRMVIKENIEKNLLTIEF 397 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D G+G+ ++ K M FGQ + R EGTG+GLPL+K +V+ G F I S G Sbjct: 398 HDNGIGIMQQDIYKVMSVFGQADSGY--RNEGTGIGLPLSKKLVELMGGTFNIKSEAKLG 455 Query: 802 TLIEIIFPLYDTSHPHDCI 820 T I + F Y+ D I Sbjct: 456 TTITLNF-FYEEQTCEDLI 473 >gi|294495271|ref|YP_003541764.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292666270|gb|ADE36119.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 713 Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 94/282 (33%), Positives = 158/282 (56%), Gaps = 4/282 (1%) Query: 533 TKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 TK+ + ++ I I + + Y+ + DI+E K+ +N L AK AE KS+F+ Sbjct: 430 TKKGRKRNVEIAISNITYEGEYASLGSARDITERKENENALIQAKMKAEVADRTKSEFMT 489 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SHE+RTPL +IIGFS+++ L N + +Y + I +SG +L ++ND+LDISK+ Sbjct: 490 TMSHELRTPLNSIIGFSQMLLEVPGSELTNAHH-KYVSNILKSGKSLLHLINDILDISKV 548 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710 E+GK + E + +A+ + L++ A++K I I + N + AD+ KQ+ N Sbjct: 549 EAGKKEVEAEFFDIHKALYDVEMLIRPLASKKNIDIIVDYENANNLLYADVIMFKQVMYN 608 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 IL+NA FT G++ + T + +E + V+D G+G+ + E +PF QI +++ R Sbjct: 609 ILNNATKFTAEKGKVFV-TAKSGEKETSISVKDNGIGIAEDKKEMVFEPFKQIDSAKNRR 667 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 EGTGLGL L ++ V+ + G ++ S KG+ P D Sbjct: 668 YEGTGLGLALVRSYVEMHGGNVWVESEEGKGSTFIFTIPQQD 709 >gi|189423630|ref|YP_001950807.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419889|gb|ACD94287.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 704 Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 91/254 (35%), Positives = 136/254 (53%), Gaps = 8/254 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS+ KQ + +L A+ AE S KS+FLA +SHEIRTP+ +IG + ++ Sbjct: 309 DISDRKQHEKELLEARYAAEAASRAKSEFLANMSHEIRTPMNGVIGMAHLLGTTEL---- 364 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +P +Y I+ S N ++ ++ D+LD+S+IE+G+M L SL + E + Q Sbjct: 365 SPEQEQYLENIENSANSLITLIGDILDLSRIEAGRMLLENVDFSLRRCIQELLGSQQFQI 424 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 N+K+I I T A ++P +L D +QI LN+L NAI FT GG I + TS E + Sbjct: 425 NQKKISIHTEIAEDVPDLLRGDQLRTRQILLNLLGNAIKFTEHGGVTITAQLVTSEENRV 484 Query: 739 ---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 L V DTG+GM LE+ PF Q NS R G+GLGL + + + + G+ + Sbjct: 485 LIHLAVSDTGIGMPPDLLERIFAPFEQADNSTTRRYGGSGLGLAICRRLAELMGGRIWAE 544 Query: 796 STPAKGTLIEIIFP 809 S G+ + P Sbjct: 545 SGAEGGSTFHVELP 558 >gi|302877991|ref|YP_003846555.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302580780|gb|ADL54791.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 1407 Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 89/255 (34%), Positives = 144/255 (56%), Gaps = 8/255 (3%) Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 S Y + DIS ++ + L +A+ +AE+ S KSDFLA +SHEIRTP+ IIG S + Sbjct: 649 SGYLCVIQDISGRRETEQNLINARTLAEETSRMKSDFLANMSHEIRTPMNGIIGMSHLAL 708 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 N PR +Y I +SG +L I+ND+LDISKIE+GK+++ L+ +++ Sbjct: 709 NTDL----TPRQRDYLKKIQQSGQNLLRIINDILDISKIEAGKLSIEHSEFELENTLADV 764 Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-IST 729 ++L+ EK + + A+++P +L D + Q+ LN SNA+ FT G +I + Sbjct: 765 VALIGEKTTEKGLELILDIASDVPVNLLGDSLRLGQVLLNYASNALKFTEQGEIVIAVRL 824 Query: 730 THTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 S ++V+L VRDTG+G+++ ++ + PF Q S R GTGLGL + + + D Sbjct: 825 RERSEDQVLLYFEVRDTGIGLSSEQISRLFTPFTQGDASTTRRYGGTGLGLAICRQLADL 884 Query: 788 NMGKFYIFSTPAKGT 802 G+ + S +G+ Sbjct: 885 MGGEAGVNSVEGQGS 899 >gi|332524127|ref|ZP_08400357.1| signal transduction histidine kinase-like protein [Rubrivivax benzoatilyticus JA2] gi|332107466|gb|EGJ08690.1| signal transduction histidine kinase-like protein [Rubrivivax benzoatilyticus JA2] Length = 1062 Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 98/360 (27%), Positives = 180/360 (50%), Gaps = 6/360 (1%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L IL+ G+ + +G +L TN + + G E+++R + Sbjct: 556 RLRGILDNVPIGVMFADLDGRLLDTNPCLCTMLGRSAEELVRCSLDDISHPDEREADRQA 615 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 L L T+ + T + L R + L +S + ++E E +L Sbjct: 616 L-RTLRAGGASTVRRQTRLLRADGAALHARTLFTLLHDASGQPWRLAGVAEDITEHRRLE 674 Query: 573 HAKKI---AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +++ AE + K++FL+R+SHE+RTPL A+IGF++++ R PL P E++ Sbjct: 675 ESERALHRAEAANRAKTEFLSRMSHELRTPLNAMIGFAQLLGLDRDPPLA-PHQREWSTQ 733 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + R+G +L ++ND LD++++E+G + L P+ L AV +I ++ A + + Sbjct: 734 MLRAGWHLLAMINDTLDLARLETGAVQLDLRPLDLRSAVGASIEMIATAAERMGVTVDAE 793 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 A +LAD +KQ+ N+LSNA+ + GG +++ + +E V LRVRDTG+GMT Sbjct: 794 LAPEALAVLADDTRLKQVLTNLLSNAVKYNRPGGTVVVESLAPDDEHVQLRVRDTGLGMT 853 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ +P+ ++ +Q EGTG+GL +++ + + G ST G++ + P Sbjct: 854 PEQVAGLFQPYNRL-GREQSTIEGTGIGLVISRRLAELMGGTLDGDSTAGSGSVFTLTLP 912 >gi|114766988|ref|ZP_01445907.1| cytoplasmic sensor hybrid histidine kinase [Pelagibaca bermudensis HTCC2601] gi|114540834|gb|EAU43897.1| cytoplasmic sensor hybrid histidine kinase [Roseovarius sp. HTCC2601] Length = 855 Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 144/506 (28%), Positives = 231/506 (45%), Gaps = 65/506 (12%) Query: 333 FFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391 F +Y+ L ANP+FL ++ +D + P S + ++ ML Sbjct: 92 FAMYNSDALLELANPAFL--APFEDIDSV-----------GPGASYRHVLE--MLVEEGI 136 Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEK----ANQF----PENMPQNGIEPEDVDTRIN 443 + R H + +E M+ IP E QF MP G+ VD Sbjct: 137 VDLQGERRRHWLSRMQER-WEMSPIPPETIRLWTGQFIKIQDRRMPDGGVVSLCVDI--- 192 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF---------GYPVEDILR 494 E+M++ S +E DG I + E +L N L+ G EDILR Sbjct: 193 -----TELMRMWSAIEELPDGFVIYDAEDRLLMCNAPYRNLYSDSAPAIIPGASFEDILR 247 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS---LRIIIKKLPFS 551 + +L E LS R E E++L LRI + L Sbjct: 248 YGLSQGQYAEALGREEDWLEERLSAHRRAEQEM-------EQQLRDGRWLRIYERALSDG 300 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 L + DI+E K+ + +L AK+ AE+ S KS FLA +SHEIRTP+ ++G +E+++ Sbjct: 301 GRVGLRI-DITEAKRIQQELVEAKRRAEEASHAKSAFLANMSHEIRTPMNGVVGMAELLR 359 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 L + + + Y + I SG +L I+ND+LD SKIE+ ++ L EP L+ V E Sbjct: 360 ES---ALSDEQAL-YVDTIRNSGEALLVIINDILDYSKIEAERLQLKPEPFDLERTVHEV 415 Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + ++Q A EK + + + +P R + D V+QI N++ NA+ FT + G ++I T Sbjct: 416 LLMLQPTAREKGLELLVDYDMFLPTRFVGDPGRVRQIFTNLVGNAVKFT-NEGHVLIRIT 474 Query: 731 HTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 EE V V DTG+G+ ++E F Q+ + + + EGTGLGL + K + D Sbjct: 475 GRCVEEGEAAVHATVEDTGIGIPPDKIEHIFGEFNQVEDDRNRQFEGTGLGLAITKRLTD 534 Query: 787 ANMGKFYIFSTPAKGTL--IEIIFPL 810 G+ ++ S +G+ + ++ P+ Sbjct: 535 LMGGEIWVESEAGRGSCFGLRMVLPV 560 >gi|160943149|ref|ZP_02090386.1| hypothetical protein FAEPRAM212_00634 [Faecalibacterium prausnitzii M21/2] gi|158445618|gb|EDP22621.1| hypothetical protein FAEPRAM212_00634 [Faecalibacterium prausnitzii M21/2] Length = 752 Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 145/254 (57%), Gaps = 9/254 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ ++ + A + AE+ S K+DFL+ +SH+IRTP+ AIIG + ++KN+ P + Sbjct: 349 EMRRAQDAAAEALQSAERASKAKTDFLSNMSHDIRTPMNAIIGITALMKNELHEP---EK 405 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 E+ ++ SG L+L I+N++LD+S+IESGK LH E ++L + +S+ S+++ A ++ Sbjct: 406 LAEHLGKLESSGQLLLGIINNILDMSRIESGKTTLHVEKMNLPQQISQLDSIIRQQAGQR 465 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR-- 740 S +LAD + Q+ +NILSNA+ +TP+GG I + E R Sbjct: 466 SQSFTVSTNLQHENVLADPNRLNQVLMNILSNAVKYTPTGGHIRLEVEELPRNEHYARYR 525 Query: 741 --VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V+D G+GM+ + PF + S + +GTGLG+ + K+++D G + S Sbjct: 526 FVVQDDGIGMSADYQKTLFDPFTREERSGTNKVQGTGLGMAITKSVIDLMGGSISVESAT 585 Query: 799 AKGTLIEII--FPL 810 KGT E++ FP+ Sbjct: 586 GKGTRFEVVLEFPI 599 >gi|37676244|ref|NP_936640.1| hypothetical protein VVA0584 [Vibrio vulnificus YJ016] gi|37200785|dbj|BAC96610.1| conserved hypothetical protein [Vibrio vulnificus YJ016] Length = 1072 Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 113/383 (29%), Positives = 191/383 (49%), Gaps = 18/383 (4%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 Q G+E E ++ R K E+ + +I++ +AI+N I N ++GY Sbjct: 143 QAGLEKE-IELRTADLKASEELSR--TIIDGAPSSVAIVNESLFISLWNSTAQNVYGYSS 199 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL---GSTKEEKL--LSLRII 544 E+ + L + P ++H L+ L+L + +E +TKE + + L + Sbjct: 200 EEATGENILTLLNMSLPDALSHVLSAPLALQNQPDVEGGFFEVETTTKEGHMVPIDLGVS 259 Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 I +L + +L + D++ K + +L+ AK AE+ KS FLA +SHEIRTP+ AII Sbjct: 260 IFELNGACHAALFLRDVTSRKAVEKELNDAKAKAEEAVEVKSMFLANMSHEIRTPMNAII 319 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G S + P+ +Y + I S L+L I+ND+LD SKIE+GK+++ L Sbjct: 320 GMSHLALKTDL----TPKQHDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIETTEFYL 375 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723 D+ + A EK + + PR +L D + QI +N+++N++ FT G Sbjct: 376 DDVFHNVSMVTGQKAFEKGLELIFDLPRETPRCLLGDPLRLGQIIINLVNNSVKFTEK-G 434 Query: 724 QIIISTTHTSNEEVIL----RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 +I +S H N E ++ R+ DTG+GMT+ +++ F Q S + GTGLGL Sbjct: 435 EITVSVHHIRNVEDLVELEFRISDTGIGMTDKQMKSLFTAFTQADGSTTRKYGGTGLGLS 494 Query: 780 LAKAMVDANMGKFYIFSTPAKGT 802 + + +V+ G+ + S KG+ Sbjct: 495 ICRRLVELMGGQIRVESEAGKGS 517 >gi|32477877|ref|NP_870871.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32448434|emb|CAD77949.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 697 Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 83/247 (33%), Positives = 143/247 (57%), Gaps = 5/247 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 TM DI++ K + L A+ AE + + +FLA +SHEIRTP+ AI+G ++++++ Sbjct: 299 TMQDITDRKLFEQSLQDARDAAEAANRSRGEFLANMSHEIRTPMAAILGHADILRDH--- 355 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L +P ++ + I R+GN +L I+ND+LD+SKI++GK+ + +PV D V+E SL+ Sbjct: 356 -LRDPDNLQVVDTIRRNGNFLLGIINDILDLSKIDAGKLEVAKQPVRPDAIVAEVRSLMD 414 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A EK++ ++ F +P ++ D ++QI +N++ NAI FT G + +N Sbjct: 415 VRAAEKKLPLQIEFDGPVPAVIHTDAIRIRQILVNLVGNAIKFTDEGVVRLTVRFDEANS 474 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V DTG+G+ + E++K PF Q+ N+ GTGLGL + + A G+ + Sbjct: 475 CLQFHVIDTGIGIQSDEIDKLFDPFVQVDNTSTRSFGGTGLGLAICHRLAHALNGQVDVE 534 Query: 796 STPAKGT 802 S G+ Sbjct: 535 SQYGVGS 541 >gi|163797314|ref|ZP_02191267.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159177405|gb|EDP61961.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 485 Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 88/238 (36%), Positives = 139/238 (58%), Gaps = 6/238 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHE+RTPL AI+GFSE Q GP+ + RY +YAN I S + +L ++ND+ Sbjct: 239 KSTFLATMSHELRTPLNAIMGFSEAQAKQLLGPVPS-RYRDYANDIHTSASHLLAVLNDI 297 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI--PRILADLR 702 LD++++++ ++ L+ E + +AV A+ ++ + KR I S N + AD R Sbjct: 298 LDMARMDARRLTLYEEEFNPSKAVDMAVRMID--PDRKRAGIVLSIENRAMGSTLRADER 355 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 ++QI LN+LSNA+ FT GG + ++ +++ + L VRDTG G++ L++ +PF Q Sbjct: 356 LLRQIVLNLLSNAVKFTSPGGTVTVALDQSASG-LTLSVRDTGTGISPDLLKRVAEPFFQ 414 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 S R +GTGLGL L K + + G I ST +GT++ + FP D + Sbjct: 415 ADQSYARRHQGTGLGLSLVKGFAELHGGSIAIESTLGEGTMVAVRFPAARVGKSADTV 472 >gi|189183162|ref|YP_001936947.1| histidine kinase sensor protein [Orientia tsutsugamushi str. Ikeda] gi|189179933|dbj|BAG39713.1| histidine kinase sensor protein [Orientia tsutsugamushi str. Ikeda] Length = 503 Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 101/318 (31%), Positives = 168/318 (52%), Gaps = 8/318 (2%) Query: 496 PFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL--LSLRIIIKKLPFS 551 PF+ V + +P +++H + L + T + + + + ++ L L L +I Sbjct: 181 PFSANVLIHCESPIILDHTVIAFLKITYNATQQWMYINNISKQVLTILLLMSLIFFFIIK 240 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 S S I+ L A++ AEKE+ K+ FLA VSHE+RTPL+AIIG +E+I Sbjct: 241 SSISNVQQIINVQLNANKYLEQARQKAEKENIAKNKFLANVSHELRTPLSAIIGLTEIIL 300 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + + Y Y I SG +L ++ND+LD SK + K+ + V L++ + + Sbjct: 301 SNSHCKIN---YYNYIRDIHNSGKHLLAVINDILDFSKASANKLTVENVAVDLNKLAASS 357 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + L+ A + I + + F + I AD + +KQ N+LSN+I FTPS G I + + Sbjct: 358 LRLMYTKAKKAGIKLISKFPPDQIIINADAKRLKQALFNLLSNSIKFTPSKGSITLEISM 417 Query: 732 TSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + ++ ++V DTG+G+ +++ KA+ F Q+ N+ + EGTGLGLPL K ++ G Sbjct: 418 NELKSLVYIKVIDTGIGIAEHDIPKALSSFEQVNNNLSNQREGTGLGLPLTKKLIYLMEG 477 Query: 791 KFYIFSTPAKGTLIEIIF 808 F I S +GT + I F Sbjct: 478 DFEITSNIGQGTTVTITF 495 >gi|108805455|ref|YP_645392.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM 9941] gi|108766698|gb|ABG05580.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM 9941] Length = 1369 Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 109/360 (30%), Positives = 191/360 (53%), Gaps = 29/360 (8%) Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 G+A++ +G L NRA+ ++ GYP E +L+K F P ++ L + L R+ Sbjct: 509 GMALVGLDGRWLQANRALCEIVGYPRERLLQKTFQDI---THPEDLDADLELLRRLVARE 565 Query: 524 ----TLEKITLGSTKE--EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577 +EK + ++ LLS+ ++ + + DI+E K+ + +L AK+ Sbjct: 566 IPGYQMEKRYIHASGRIVWVLLSVSLVTGENDEPLYVIAQVQDITERKRIEEELREAKEQ 625 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE S KS+F+A +SHEIRTP+ +IG +E++ + PL P EYA I SG + Sbjct: 626 AEAASRAKSEFVANMSHEIRTPMNGVIGMAELLLDT---PL-TPEQREYARTIRSSGEAL 681 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L I+ND+LD SKIE+G+++L P + + V E +SL+ A+ K + + +P + Sbjct: 682 LAILNDILDFSKIEAGRLSLERIPFEIHKEVEEVVSLLAPRAHAKGLELICFIEPGVPPL 741 Query: 698 L-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------------EVILR--VR 742 + D ++Q+ N++ NAI FT G++++S + + E E+ LR V+ Sbjct: 742 IKGDPFRLRQVLTNLIGNAIKFTEE-GEVVVSASLSKEEKKKSAPAGERGGEIELRFEVK 800 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D+G+G+ + + + F Q S R GTGLGL +++ +V+ G+ + S+P +G+ Sbjct: 801 DSGIGIQEEQQKHLFEAFSQADASTTRRYGGTGLGLAISRQLVEMMGGEIGLKSSPKEGS 860 >gi|254411816|ref|ZP_05025592.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196181538|gb|EDX76526.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1478 Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 107/373 (28%), Positives = 200/373 (53%), Gaps = 19/373 (5%) Query: 442 INKRKMEIEVMQLCSIL-EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 I+ RK E ++ +++ E DG+ + + +G IL N A ++FGY ++L + + Sbjct: 383 ISARKRADEALRRQALMFETIYDGVIVTDLKGHILDWNPAAERIFGYEKTEVLGQTCGMV 442 Query: 501 LEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTK---EEKLLSLRIIIKKLPFSSCYS 555 + + + + + + L + R T +E I K E ++ LR + + P ++ Sbjct: 443 YQPDEATALTQQMLDSLLHEGRWTREIEFIRKDGNKGVCETVVVPLRDDLGR-PIAAIG- 500 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 D++E K+ +NKL A++ A + + K+ FLA +SHEIRTP+ ++G SE++ Sbjct: 501 -VNRDVTERKEYENKLVEAREAAVEAARAKAQFLANMSHEIRTPMNGVLGMSELLLTTDL 559 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 NPR +++ + SG +L ++ND+LD SK+E+G+M L + ++++ ++ + + L Sbjct: 560 ----NPRQLDFVKTLQVSGEHLLGVINDILDFSKLEAGEMRLDVDELNINRSLEDVLDLC 615 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A K + + ++P R++ D+ ++QI N++SN+I FT SG +I + H Sbjct: 616 SPQAEAKDLELALLVDTDVPRRLMGDVGRLRQICTNLVSNSIKFTESGEVVIRVSVHQEL 675 Query: 735 EE---VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 EE + LR VRDTG+G+ + K + F Q+ +S + GTGLGL + K +V+ Sbjct: 676 EEQDKLQLRFAVRDTGIGINPEDKSKLFQAFSQVDSSTTRKYGGTGLGLAICKQLVEMMG 735 Query: 790 GKFYIFSTPAKGT 802 G+ + S G+ Sbjct: 736 GEIGVESQLGVGS 748 >gi|327538058|gb|EGF24748.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47] Length = 638 Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 83/247 (33%), Positives = 143/247 (57%), Gaps = 5/247 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 TM DI++ K + L A+ AE + + +FLA +SHEIRTP+ AI+G ++++++ Sbjct: 240 TMQDITDRKLFEQSLQDARDAAEAANRSRGEFLANMSHEIRTPMAAILGHADILRDH--- 296 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L +P ++ + I R+GN +L I+ND+LD+SKI++GK+ + +PV D V+E SL+ Sbjct: 297 -LRDPDNLQVVDTIRRNGNFLLGIINDILDLSKIDAGKLEVAKQPVRPDAIVAEVRSLMD 355 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A EK++ ++ F +P ++ D ++QI +N++ NAI FT G + +N Sbjct: 356 VRAAEKKLPLQIEFDGPVPAVIHTDAIRIRQILVNLVGNAIKFTDEGVVRLTVRFDEANS 415 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V DTG+G+ + E++K PF Q+ N+ GTGLGL + + A G+ + Sbjct: 416 CLQFHVIDTGIGIQSDEIDKLFDPFVQVDNTSTRSFGGTGLGLAICHRLAHALNGQVDVE 475 Query: 796 STPAKGT 802 S G+ Sbjct: 476 SQYGVGS 482 >gi|313672986|ref|YP_004051097.1| multi-sensor hybrid histidine kinase [Calditerrivibrio nitroreducens DSM 19672] gi|312939742|gb|ADR18934.1| multi-sensor hybrid histidine kinase [Calditerrivibrio nitroreducens DSM 19672] Length = 1095 Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 90/262 (34%), Positives = 152/262 (58%), Gaps = 12/262 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I++ K + +L AK+ AE+ + KS FLA +SHEIRTPL IIG ++++KN+ Sbjct: 378 NINDKKVAEQELIKAKENAERANQAKSTFLANMSHEIRTPLNGIIGIAQLLKNENL---- 433 Query: 620 NPRY-IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P++ +EY +++ + + +LD++ND+ D S+IESG+M + + SL + ++E + ++ Sbjct: 434 -PKHVVEYVKHLNMASHHLLDLINDIFDFSRIESGEMKIINDIFSLKDTINEVVKVLYYR 492 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSN 734 A EK I + IP +I+ D VKQI N+L NAI FT G + I + + Sbjct: 493 AKEKNIELTVFVDPLIPSKIIGDSLRVKQILTNLLGNAIKFTEVGYVSLDVFIKNSTEKS 552 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +++ ++DTG+G++ + +K PF Q S + GTGLGL + K ++DA G Sbjct: 553 VDILFVIKDTGIGISGDKKQKLFTPFFQGDQSVTKKYGGTGLGLTIVKRLIDAMNGDINF 612 Query: 795 FSTPAKGT--LIEIIFPLYDTS 814 S P KGT + + F +Y++S Sbjct: 613 ISEPGKGTTFYVTLKFGIYESS 634 >gi|317486965|ref|ZP_07945775.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316921840|gb|EFV43116.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 1084 Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 93/255 (36%), Positives = 142/255 (55%), Gaps = 13/255 (5%) Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 C+ + D ++ K+ + +L AK+ AE S KSDFLA +SHEIRTP+ IIG + + Sbjct: 538 CW---LVDDTQNKELEKQLVLAKEEAETASRAKSDFLANMSHEIRTPMNGIIGMTHLTLQ 594 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 R +Y I S N +L IVND+LD SKIE+GK+ + L++ + E Sbjct: 595 TEL----TSRQRDYLTQISTSANTLLRIVNDILDFSKIEAGKLEMEHADFQLEQVLEEVA 650 Query: 673 SLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 S+ L A EK + + + + ++P +L D + QI LN++ NAI FT S G +++S T Sbjct: 651 SIADLSAAEKGLELLSRISPDVPPVLEGDALRLSQILLNLVGNAIKFTQS-GHVLVSVTQ 709 Query: 732 TSNEEVILRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 +E R+R DTG+GMT+ ++ + F Q NS R GTGLGL + K +V+ Sbjct: 710 ERHEGSKTRLRFSVSDTGIGMTSEQIGNLFESFTQADNSTTRRYGGTGLGLAICKRLVNL 769 Query: 788 NMGKFYIFSTPAKGT 802 G+ ++ STP G+ Sbjct: 770 MGGEIHVRSTPGHGS 784 >gi|149177491|ref|ZP_01856094.1| sensory box histidine kinase/response regulator [Planctomyces maris DSM 8797] gi|148843641|gb|EDL58001.1| sensory box histidine kinase/response regulator [Planctomyces maris DSM 8797] Length = 1362 Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 111/377 (29%), Positives = 191/377 (50%), Gaps = 21/377 (5%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF- 497 ++R N+ +++ + +IL T + IN + +I N FG+ + + + Sbjct: 538 ESRANQEELQSRDEKNRAILATTHESYIAINEKSLICEWNEQAEVTFGWSYAEAIGRSLE 597 Query: 498 -TVFLE----QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 T+ E Q+T + HYL L + LE + E + + I +P S Sbjct: 598 ETIIPERYWLQHTHGI-EHYLRSGEGPFLNKRLELSAMHRDGHE--FPVELTITPVPQGS 654 Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 ++ +HDI+ KQ + +L AK+ AE S KS FLA +SHEIRTP+ A+IG +E++ Sbjct: 655 GFLFAAFIHDITVEKQAEEELRQAKEAAEAASRAKSAFLATMSHEIRTPMNAVIGMTELL 714 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + N EY + SG +L ++ND+LD SKIE+G+ +L P L E + + Sbjct: 715 LDTDL----NSTQREYLTMVQESGESLLSVINDILDFSKIEAGRFDLEKAPFHLRENLGD 770 Query: 671 AISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 + + + A+ K + + ++P I+ D ++QI +N++ NAI FT G+I++ Sbjct: 771 TMRSLAVRAHHKHLELAFHLDADVPDTIVGDRFRLRQIIVNLVGNAIKFTEE-GEIVLDV 829 Query: 730 TH--TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + S E+ L VRDTG+G+ + ++ + F Q+ S R GTGLGL +A ++ Sbjct: 830 NYDFQSKNELQLHFVVRDTGIGIPEDKQQQIFQAFEQVDESMARRFSGTGLGLAIASRLI 889 Query: 786 DANMGKFYIFSTPAKGT 802 + GK ++ S KG+ Sbjct: 890 EMMGGKIWVNSEVGKGS 906 >gi|149189097|ref|ZP_01867385.1| RscS; sensor kinase protein [Vibrio shilonii AK1] gi|148837060|gb|EDL54009.1| RscS; sensor kinase protein [Vibrio shilonii AK1] Length = 792 Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 106/367 (28%), Positives = 185/367 (50%), Gaps = 21/367 (5%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-QNTPSVMNHY 512 L ++++A D + I +++G I NRA ++ GY +E + K FL+ + T Sbjct: 289 LATVVKAARDAVVITDQKGTIEWVNRAFEEMTGYALESVQGKKPGHFLQGEKTEESTRQR 348 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS------CYSLTMHDISEWKQ 566 + + L+ L E + S E + + I P S + D++E+K+ Sbjct: 349 IAKSLAQGLPIKAEILNYDSQGREYWVDIDIT----PISDENGNLDRFIAIERDVTEYKR 404 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 +NKL++ + A + KS FLA +SHEIRTP+ ++G +++++ + + +P + E Sbjct: 405 LENKLTNTARDANAANEAKSAFLATMSHEIRTPMNGVLGLTQILEKE----ITDPNHREV 460 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I SGN ++ I+ND+LDISKIE+ + L P + E +S + Q +EK +L Sbjct: 461 LQLILSSGNHLVSILNDILDISKIENEALTLEHSPFKMIEILSPVKNTYQSLCSEKGLLF 520 Query: 687 RTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 +N P + + D ++QI LN++ NA+ FT G I+IS V+D Sbjct: 521 EV--IDNTPPYTQFIGDEVRLRQILLNLVGNALKFTQK-GSIVISVEVNVGGMCRFEVKD 577 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+T L+ + F Q S + GTGLGL + K++V+ G+ + S +G+ Sbjct: 578 TGIGITPDRLDSVFEKFEQAEASTTRQFGGTGLGLSIVKSLVELMGGEILVDSKVGRGST 637 Query: 804 IEIIFPL 810 ++ PL Sbjct: 638 FTVLLPL 644 >gi|189424781|ref|YP_001951958.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189421040|gb|ACD95438.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1007 Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 86/254 (33%), Positives = 140/254 (55%), Gaps = 8/254 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI+ KQ + +L AK+ AE +S KS FLA +SHEIRTP+ IIG + +++ Sbjct: 601 TVIDITARKQAEQQLRSAKEAAEAANSAKSAFLANMSHEIRTPMNGIIGMTHLLQTTVI- 659 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P Y I+ S N + +++D+LD+SKIESGK+ L + SL + E ++ Q Sbjct: 660 ---TPEQEHYLENIENSANSLTTLISDILDLSKIESGKLELEYSDFSLRRCIRELLASQQ 716 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K ++++T A+N+P IL D +QI LN++ NAI FT G I + + Sbjct: 717 FQIQHKELMVQTDIADNVPDILRGDQLRTRQILLNLIGNAIKFTEQGSIAITARLVAQQD 776 Query: 736 EVI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++ L + DTG+GM+ ++++ PF Q NS + G+GLGL + + +++ G+ Sbjct: 777 DLALIRLSISDTGIGMSPQQVDRIFAPFEQADNSITRKYGGSGLGLAICQRLIELMGGRI 836 Query: 793 YIFSTPAKGTLIEI 806 + ST G+ I Sbjct: 837 WAESTEGNGSSFHI 850 >gi|91772450|ref|YP_565142.1| PAS sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711465|gb|ABE51392.1| Signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 436 Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 143/251 (56%), Gaps = 2/251 (0%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS+ K + L +K I E S KS+F+ VSHE+RTPL +IIGFS ++K L Sbjct: 183 DISDRKMAEISLLKSKDILENASRIKSNFIGNVSHELRTPLNSIIGFSHILKENNENNLT 242 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + ++Y + ++ SG +L ++ND+LDISKIESG+ E L+ + E + + +A Sbjct: 243 ENQ-LKYCSNVEISGKHLLALINDVLDISKIESGEARFEPELFKLNLLIHEVVESLAPFA 301 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 N+K I + + + + AD +KQI LN+L+N+I FTP+ G+I++ T E + + Sbjct: 302 NKKSIELEMTLKHKNIGVHADRTKIKQILLNLLNNSIKFTPACGKIML-TVGVDEENINI 360 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 + D G+G+ Y ++ +PF Q + EGTGLGL +AK V+ + G+ ++ S Sbjct: 361 SISDNGIGIAKYNYDRIFEPFNQADMLLTKQYEGTGLGLSIAKKYVEMHKGQIWVKSELG 420 Query: 800 KGTLIEIIFPL 810 GT I P+ Sbjct: 421 VGTTFNIKIPI 431 >gi|300867967|ref|ZP_07112606.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300333988|emb|CBN57784.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1102 Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 132/224 (58%), Gaps = 2/224 (0%) Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 +FLA +SHE+RTPLTAI+G SE ++++ FGPL ++ + A I++SG +L+++ND+LD Sbjct: 598 EFLANMSHELRTPLTAILGLSEALRDEVFGPLTAKQHQKLAT-IEQSGQHLLELINDVLD 656 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706 +SKIESGKM LH + +++ V+ A++K+I + I ++ D R ++Q Sbjct: 657 LSKIESGKMELHLSNTDIQGLCDASLAFVRQQAHQKQIKLSAHVPPRIGKVKIDERRMRQ 716 Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPN 765 + +N+LSNA+ FTP G + I E + V DTG+G+ + K +PF Q+ + Sbjct: 717 LLINLLSNAVKFTPESGAVWIEVKGDLEHETLQFIVADTGIGIAPENIGKLFQPFVQVDS 776 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 S R GTGLGL L + +++ + G + S G+ + P Sbjct: 777 SFTRRYAGTGLGLALVRQVIELHGGSVSLESELGSGSRFTVSLP 820 >gi|260427268|ref|ZP_05781247.1| cytoplasmic sensor hybrid histidine kinase [Citreicella sp. SE45] gi|260421760|gb|EEX15011.1| cytoplasmic sensor hybrid histidine kinase [Citreicella sp. SE45] Length = 861 Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 122/377 (32%), Positives = 192/377 (50%), Gaps = 28/377 (7%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTN---RAVSK------LFGYPVEDILRKPFTVF 500 E+M++ S LE DG I + E +L N RA+ K + G EDILR + + Sbjct: 194 ELMRMWSALEELPDGFVIYDAEDRMLMCNEPYRAIYKASAPAIVPGASFEDILR--YGLE 251 Query: 501 LEQNTPSVMNH--YLTEILSLDLRQTLE-KITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 Q +V +L E LS + E + LG + LRI + L L Sbjct: 252 RGQYAAAVGREEDWLEERLSAHRHASHEMEQQLGDGR-----WLRIYERPLRDGGRVGLR 306 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DI++ K + +L A+ AE S KS FLA +SHEIRTP+ ++G +E+++ P Sbjct: 307 I-DITDVKDTQRELEEARIRAETASRAKSSFLANMSHEIRTPMNGVVGMAELLRES---P 362 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 L + + + Y + I SG +L I+ND+LD SKIE+ K+ L E L+ AV E + L+Q Sbjct: 363 LTDEQRL-YVDTIRGSGEALLVIINDILDYSKIEADKLKLSAESFDLERAVHEVLLLLQP 421 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI--IISTTHTSN 734 A EK + + + +P R++ D V+QI N++ NA+ FT G + ++ H Sbjct: 422 TAREKGLEMLAEYDMFLPQRVVGDPGRVRQILTNLVGNAVKFTNEGHVLVRVLGLRHAHG 481 Query: 735 E-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +V + V DTGVG+ ++E F Q + + EGTGLGL + K +V+ G+ + Sbjct: 482 ALDVRITVEDTGVGVPADKIEHIFGEFNQAEDDRNRPFEGTGLGLAITKRLVEMMEGEIW 541 Query: 794 IFSTPAKGTLIEIIFPL 810 + S P +G+ + PL Sbjct: 542 VKSEPGQGSCFGLRIPL 558 >gi|113474471|ref|YP_720532.1| response regulator receiver sensor signal transduction histidine kinase [Trichodesmium erythraeum IMS101] gi|110165519|gb|ABG50059.1| response regulator receiver sensor signal transduction histidine kinase [Trichodesmium erythraeum IMS101] Length = 395 Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 91/269 (33%), Positives = 150/269 (55%), Gaps = 18/269 (6%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ ++ + K+ K +L K AE + KS FLA +SHE+RTPL AIIG+SE++ Sbjct: 122 TLENVQQLKENK-RLKQEKHEAEAANRAKSVFLANMSHELRTPLNAIIGYSEILLEDAHS 180 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 LG+ +I N I SG +L I+ND+LD+SKIE+GKM++H+E V++ + ++ +Q Sbjct: 181 -LGSKDFIHDINNIHTSGKHLLTIINDILDLSKIEAGKMDVHWESVNIMVLIENVLATIQ 239 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 + ++ +N I+AD ++Q+ LN+LSNA FT + G+II+ +N+E Sbjct: 240 PLIEQNNNILEIICEDNQEPIMADPNKMRQVILNLLSNAAKFTEN-GKIILKVKVANNDE 298 Query: 737 ---------------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 +IL V DTG+G++ +++ +PF Q NS + GTGLGL ++ Sbjct: 299 DFISQNRDCNFTDKVLILSVADTGIGISEEKIDSLFQPFTQADNSTTRKYGGTGLGLAIS 358 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + G + S KG++ + FP+ Sbjct: 359 RHFCKMMGGDITVVSEVNKGSIFTVKFPV 387 >gi|170748787|ref|YP_001755047.1| multi-sensor signal transduction histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170655309|gb|ACB24364.1| multi-sensor signal transduction histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 793 Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 135/229 (58%), Gaps = 2/229 (0%) Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHE+RTPL AIIGF++V++N GPLG PRY EY I SG+ +L +++D+LD+ Sbjct: 530 FLANMSHELRTPLNAIIGFADVMENAVLGPLGTPRYTEYCRDIRESGSHLLSMIDDILDM 589 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707 +++E+ ++ L +S + AVS A++ V+ A EK I + + +LAD +++ QI Sbjct: 590 ARLEARRVRLSPRAISAETAVSAALAPVEAAAREKAITVSVDVVPGL-ELLADPQAIGQI 648 Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 N++ NA+ FTP+GG++ + + L + D G+G+ +L + +PF Q+ Sbjct: 649 LANLVQNAVKFTPAGGRVAVR-GRRAGACTHLYIEDNGIGIPRTDLARLGRPFTQVERQM 707 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 +G+GLGL + ++MV+ + G I S GT++ + P P Sbjct: 708 TRCHKGSGLGLAITRSMVELHGGSLRIRSEETVGTIVLVRLPATPAERP 756 >gi|209809121|ref|YP_002264659.1| response regulator, histidine kinase [Aliivibrio salmonicida LFI1238] gi|208010683|emb|CAQ81070.1| response regulator, histidine kinase [Aliivibrio salmonicida LFI1238] Length = 891 Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 96/264 (36%), Positives = 150/264 (56%), Gaps = 10/264 (3%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ISE ++K+ AK+ AE+ + KS FLA +SHEIRTPL IIG S ++ + P+ + Sbjct: 359 ISERAMNEDKIVGAKEEAEQANLAKSTFLANMSHEIRTPLNGIIGMSGILSETKLTPIQH 418 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 +Y N I+ S +L ++ND+LDISKIESG ++LH L E + + +S++ AN Sbjct: 419 ----DYLNTIETSSQTLLILINDILDISKIESGNLSLHPHSTDLREIIFDTVSIIISKAN 474 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--E 736 EK + + + ++P +L D ++QI +N+ SNA+ FTP G Q+ + T N E Sbjct: 475 EKHLNLIINIPPDLPSSLLLDDHRLRQILMNLASNAVKFTPKGHVQLDVEFTKKENNTVE 534 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + V D+GVG+ +L +PF Q +S + GTGLGL ++K +VD G+F + S Sbjct: 535 LTISVSDSGVGIEQNKLNSIFEPFVQEDSSITRQFGGTGLGLAISKQLVDLMDGEFTVKS 594 Query: 797 TPAKGTLIEIIFPLYDTSHPHDCI 820 T +G+ F L H+ I Sbjct: 595 TKGEGSTFS--FSLITEVLEHNVI 616 >gi|254796403|ref|YP_003081239.1| Sensor histidine kinase PleC [Neorickettsia risticii str. Illinois] gi|254589640|gb|ACT69002.1| Sensor histidine kinase PleC [Neorickettsia risticii str. Illinois] Length = 447 Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 97/240 (40%), Positives = 135/240 (56%), Gaps = 6/240 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 KL AK+ E+ SS KS FLA VSHE++TPL AIIGFS++I R + + EYAN Sbjct: 207 KLKKAKESIEEISSQKSQFLANVSHELKTPLNAIIGFSDLI---RTAEVLGTEHREYAND 263 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SGN +L+++ND+LD SK E NL +P D + K+I I S Sbjct: 264 IYYSGNHLLNLINDILDFSKSELN--NLEIKPTLFDLVRLTETCIRMTTTKRKKIKIVKS 321 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 F +N I +D + VKQ+ LNILSN+I FT G I IS +E + + + D GVG+ Sbjct: 322 FFSNKILIKSDHKRVKQVILNILSNSIKFTNEDGLIKISIIRLPSE-IEIEISDNGVGIP 380 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ KA+ FGQ + +G G+GLPL+K +V+ G F I S GT+++I P Sbjct: 381 EKDIAKALSVFGQSNTELSRKYDGAGIGLPLSKKLVELMGGAFEIESKEGSGTVVKIRLP 440 >gi|167746413|ref|ZP_02418540.1| hypothetical protein ANACAC_01123 [Anaerostipes caccae DSM 14662] gi|167653373|gb|EDR97502.1| hypothetical protein ANACAC_01123 [Anaerostipes caccae DSM 14662] Length = 1116 Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 86/256 (33%), Positives = 140/256 (54%), Gaps = 13/256 (5%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E +Q++ L A A + K FL+ +SH+IRTP+ AIIG S + R Sbjct: 582 EEEQQRQALQTALDNANAANKAKGQFLSNMSHDIRTPMNAIIGMSAIASAHLDD---RER 638 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +E I+ SG +L ++ND+LD+SKIESGK++L EP +L E +++ + L++ A+ + Sbjct: 639 IMECLGKINLSGKHLLSLINDILDMSKIESGKLSLRKEPFNLAELITDTVELIRPQADSR 698 Query: 683 RILIRT---SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----- 734 RI ++ S N ++ D ++Q+ +NILSNA+ +TP GG+I I + Sbjct: 699 RIRVKVRLRSLKNE--NVIGDPLRIRQVCINILSNAVKYTPEGGKIDIQVRQEDSVRREY 756 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + I DTG+GM L+K PF + +S + GTGLG+ + K ++D G + Sbjct: 757 QNFIFCCSDTGIGMDRQFLKKLFHPFERASDSTSSKMTGTGLGMAITKNIIDLMSGDIQV 816 Query: 795 FSTPAKGTLIEIIFPL 810 S+P KG++ + PL Sbjct: 817 ESSPGKGSVFTVTLPL 832 >gi|317471229|ref|ZP_07930594.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316901276|gb|EFV23225.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 1090 Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 86/256 (33%), Positives = 140/256 (54%), Gaps = 13/256 (5%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E +Q++ L A A + K FL+ +SH+IRTP+ AIIG S + R Sbjct: 556 EEEQQRQALQTALDNANAANKAKGQFLSNMSHDIRTPMNAIIGMSAIASAHLDD---RER 612 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +E I+ SG +L ++ND+LD+SKIESGK++L EP +L E +++ + L++ A+ + Sbjct: 613 IMECLGKINLSGKHLLSLINDILDMSKIESGKLSLRKEPFNLAELITDTVELIRPQADSR 672 Query: 683 RILIRT---SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----- 734 RI ++ S N ++ D ++Q+ +NILSNA+ +TP GG+I I + Sbjct: 673 RIRVKVRLRSLKNE--NVIGDPLRIRQVCINILSNAVKYTPEGGKIDIQVRQEDSVRREY 730 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + I DTG+GM L+K PF + +S + GTGLG+ + K ++D G + Sbjct: 731 QNFIFCCSDTGIGMDRQFLKKLFHPFERASDSTSSKMTGTGLGMAITKNIIDLMSGDIQV 790 Query: 795 FSTPAKGTLIEIIFPL 810 S+P KG++ + PL Sbjct: 791 ESSPGKGSVFTVTLPL 806 >gi|153007303|ref|YP_001381628.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152030876|gb|ABS28644.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 464 Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 89/252 (35%), Positives = 139/252 (55%), Gaps = 3/252 (1%) Query: 566 QEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 QEKN+ L + ++ KS+FLA +SHE+RTPLT++IG+SE++ GPL + Sbjct: 200 QEKNRELEDSYAKLKELDRLKSNFLATMSHELRTPLTSVIGYSEMMLEGLGGPLTAEQR- 258 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EY I G +L ++ +LDISKIE+G++ L V + + +AI+ V A +K + Sbjct: 259 EYLGIIMEKGENLLQLITSILDISKIEAGRVRLVLSDVDATQIMRDAIATVLPLARKKGL 318 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + A +PR+ AD ++Q +N+ SNA+ FTP+GG I +S + + + V DT Sbjct: 319 KVACD-AGAMPRVQADRDKLRQCLVNLCSNAVKFTPAGGTIAVSAEALPGDRLAIHVADT 377 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ L K F Q+ S G GLGL + K+ V+A+ G+ + S P GT Sbjct: 378 GIGIGEEHLGKVFDVFYQVDGSSTREYGGAGLGLAIVKSFVEAHGGEVGVRSIPGVGTTF 437 Query: 805 EIIFPLYDTSHP 816 +I PL + P Sbjct: 438 TVILPLRPSLVP 449 >gi|330873086|gb|EGH07235.1| two-component sensor/regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 576 Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 105/381 (27%), Positives = 179/381 (46%), Gaps = 30/381 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S++E+ D + + + +GII N+ + L G ++++ P F P+ + + Sbjct: 187 SLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAPCKNFF--TDPASADAAIKR 244 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIII---KKLPFSSCYSLTMHDISEWKQEKNKLS 572 +LS E E ++S + ++ D++E K+ + L Sbjct: 245 VLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFA-AARDVTERKRFERTLE 303 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 E S KS+FLA +SHE+RTPL A+IGFSE +K+ G + + + Y I Sbjct: 304 EKNIELEHASHMKSEFLATMSHELRTPLDAVIGFSEALKDGMVGDMTDAQR-RYIGDIFN 362 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG +L ++ND+LD+SK+E+G M L E V LDE +S ++ +V+ A +RI ++ Sbjct: 363 SGQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQAALQRIQLKLETEA 422 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL------------- 739 + + D R KQI N+L+NA+ F+ GG + ++ S +V + Sbjct: 423 DFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSRAQVSILDGDWPVHSVPLP 482 Query: 740 ----------RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 V DTG+G+ ++ K K F QI +S + EGTGLGL + K + + + Sbjct: 483 PGDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLARKFEGTGLGLAMVKQLTELHG 542 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G + S G + P+ Sbjct: 543 GCVAVASVKDLGARFVVWLPI 563 >gi|213968375|ref|ZP_03396519.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato T1] gi|301384641|ref|ZP_07233059.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato Max13] gi|302058906|ref|ZP_07250447.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato K40] gi|302133019|ref|ZP_07259009.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927013|gb|EEB60564.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato T1] Length = 576 Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 105/381 (27%), Positives = 179/381 (46%), Gaps = 30/381 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S++E+ D + + + +GII N+ + L G ++++ P F P+ + + Sbjct: 187 SLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAPCKNFF--TDPASADAAIKR 244 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIII---KKLPFSSCYSLTMHDISEWKQEKNKLS 572 +LS E E ++S + ++ D++E K+ + L Sbjct: 245 VLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFA-AARDVTERKRFERTLE 303 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 E S KS+FLA +SHE+RTPL A+IGFSE +K+ G + + + Y I Sbjct: 304 EKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDAQR-RYIGDIFN 362 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG +L ++ND+LD+SK+E+G M L E V LDE +S ++ +V+ A +RI ++ Sbjct: 363 SGQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQAALQRIQLKLETEA 422 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL------------- 739 + + D R KQI N+L+NA+ F+ GG + ++ S +V + Sbjct: 423 DFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSRAQVGILDGDWPVHSFPLP 482 Query: 740 ----------RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 V DTG+G+ ++ K K F QI +S + EGTGLGL + K + + + Sbjct: 483 PGDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLARKFEGTGLGLAMVKQLTELHG 542 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G + S G + P+ Sbjct: 543 GCVAVASVKDLGARFVVWLPI 563 >gi|281354822|ref|ZP_06241316.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] gi|281317702|gb|EFB01722.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] Length = 1137 Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 86/254 (33%), Positives = 142/254 (55%), Gaps = 14/254 (5%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DI+E +++ KL A + A KS FLA VSHE+RTPL A+IGFSE+++ Sbjct: 731 VIQDITELAEQQEKLQQALEQARAADRAKSYFLATVSHELRTPLNAVIGFSELLQGADVE 790 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P Y+ N+ +GN +L+++ND+LD+S++E+ ++ L PV + V E + + + Sbjct: 791 PQEQQEYLGSINF---AGNALLNLINDVLDLSRLEADQVELDCRPVDVKRLVREIVGVFK 847 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A EK + ++ ++ N P + D +KQI LN+ NA+ FT GG + + + E Sbjct: 848 QKAVEKNLSLQMTYTNLPPTLYLDDLRIKQILLNLTGNALKFTHDGGVTVSAVFRLAEEA 907 Query: 737 ----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG----EGTGLGLPLAKAMVDAN 788 +I + DTG+G+ ++ + +PF Q +RG EG+GLGL ++K +V+ Sbjct: 908 GQGTLIFSITDTGIGILPEKISQIFEPFVQ---DSGVRGHRIYEGSGLGLAISKRLVEKM 964 Query: 789 MGKFYIFSTPAKGT 802 GK STP KG+ Sbjct: 965 GGKLSAESTPGKGS 978 >gi|220908654|ref|YP_002483965.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865265|gb|ACL45604.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1433 Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 95/279 (34%), Positives = 153/279 (54%), Gaps = 24/279 (8%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS+ KQ + +L AK+ AE + K DFLA +SHEIRTP+ A+IG + ++ N PL Sbjct: 862 DISDRKQAEAELLQAKETAEAATRAKGDFLATMSHEIRTPMNAVIGMTGLLLNT---PL- 917 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +P +Y I +G +L ++ND+LD S+IESG ++L P L V+E I L+ A Sbjct: 918 SPEQRQYGETIRNAGESLLSVINDILDFSRIESGHLDLEEHPFELPHCVAEVIDLLANRA 977 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII----ISTTHTSN 734 EK + + +P I+AD ++QI +N+++NA+ FT G +I ++ + Sbjct: 978 VEKSLHLEVQIDPGVPAVIVADSARLRQILVNLVANALKFTDQGEVMIRVKSVAVSPDGQ 1037 Query: 735 EEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD------- 786 ++ + V+DTG+G+ +LE +PF Q+ +S R G+GLGL ++K + + Sbjct: 1038 QQTLEFSVQDTGIGIAPKQLEHLFQPFSQVDSSSTRRYGGSGLGLVISKRLCERMGGQIR 1097 Query: 787 ----ANMGKFYIFSTPAKGTLIEI---IFPLYDTSHPHD 818 A +G + F+ P + +L I I P TS P D Sbjct: 1098 VQSRAGVGSTFSFTLPVRVSLTPIMPRIDPPSLTSQPWD 1136 >gi|153870999|ref|ZP_02000277.1| Signal transduction histidine kinase [Beggiatoa sp. PS] gi|152072537|gb|EDN69725.1| Signal transduction histidine kinase [Beggiatoa sp. PS] Length = 673 Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 98/264 (37%), Positives = 141/264 (53%), Gaps = 10/264 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSE 608 L +I E +Q + LS AK+IAE KS FLA +SHE+RTPL AIIG+SE Sbjct: 145 LLQQEIVERQQIEKALSEAKEIAEHARQEAETANITKSQFLANMSHELRTPLNAIIGYSE 204 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 +++ + L +I ID +G +L ++ND+LD+SKIESGKM+L EPV+LD + Sbjct: 205 ILR-EDAEDLEQEDFIPDLKKIDTAGRHLLGLINDVLDLSKIESGKMDLLIEPVNLDMLI 263 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG--GQII 726 + + VQ +K L++ + +I D+ + QI LN+LSNA FT G I Sbjct: 264 DKVLGTVQPLIEKKANLLKIERPTVLGKIQTDMTKLCQILLNLLSNAAKFTEQGIIEFQI 323 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 +T ++VI V D G+GMT + EK PF Q +S R GTGLGL + K + Sbjct: 324 YHQINTEGDKVIFCVTDNGIGMTEKQQEKLFHPFTQADSSTTRRYGGTGLGLTITKDFAE 383 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPL 810 G + S G+ + P+ Sbjct: 384 MMGGHIKVASDFGFGSTFTLSLPI 407 >gi|331015224|gb|EGH95280.1| two-component sensor/regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 576 Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 105/381 (27%), Positives = 179/381 (46%), Gaps = 30/381 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S++E+ D + + + +GII N+ + L G ++++ P F P+ + + Sbjct: 187 SLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAPCKNFF--TDPASADAAIKR 244 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIII---KKLPFSSCYSLTMHDISEWKQEKNKLS 572 +LS E E ++S + ++ D++E K+ + L Sbjct: 245 VLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFA-AARDVTERKRFERTLE 303 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 E S KS+FLA +SHE+RTPL A+IGFSE +K+ G + + + Y I Sbjct: 304 EKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDAQR-RYIGDIFN 362 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG +L ++ND+LD+SK+E+G M L E V LDE +S ++ +V+ A +RI ++ Sbjct: 363 SGQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQAALQRIQLKLETEA 422 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL------------- 739 + + D R KQI N+L+NA+ F+ GG + ++ S +V + Sbjct: 423 DFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSRAQVGILDGDWPVHSFSLP 482 Query: 740 ----------RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 V DTG+G+ ++ K K F QI +S + EGTGLGL + K + + + Sbjct: 483 PSDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLARKFEGTGLGLAMVKQLTELHG 542 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G + S G + P+ Sbjct: 543 GCVAVASVKDLGARFVVWLPI 563 >gi|325109469|ref|YP_004270537.1| response regulator receiver sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324969737|gb|ADY60515.1| response regulator receiver sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 543 Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 92/263 (34%), Positives = 154/263 (58%), Gaps = 10/263 (3%) Query: 554 YSLTMHDIS-EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 YS+ H ++ E ++ +L + AE + KS+FLA VSHE+RTPLTAI+GF++++ + Sbjct: 124 YSVERHAMAREMERANQELQELSRQAEAANQLKSEFLANVSHELRTPLTAILGFTDLVLD 183 Query: 613 QRFGPLGNPRYIEYANY-IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 P +E A+ I ++G +L I+ND+LD+SKIE+G + + S + + E Sbjct: 184 HELEP-----EVERASLTIKQNGQHLLSILNDILDLSKIEAGHLRIERSDCSPGQIIEEV 238 Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG-GQIIIST 729 ISL+++ A K I +R ++P RI +D ++QI LN++ NAI FT G Q+ +ST Sbjct: 239 ISLLRVRATAKGIDLRFHSKPDVPARIQSDPLRIRQIMLNLIGNAIKFTERGFVQVNMST 298 Query: 730 THTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + ++ + V DTG+GMT +L++ +PF Q S + GTGLGL + + +++ Sbjct: 299 VELEGKPQLRIDVSDTGIGMTPEQLDRLFQPFVQADASITRQFGGTGLGLTICRRLLELM 358 Query: 789 MGKFYIFSTPAKGTLIEIIFPLY 811 G S P G+ +++FPL+ Sbjct: 359 DGHISASSRPELGSTFQVVFPLH 381 >gi|298485838|ref|ZP_07003916.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159662|gb|EFI00705.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 576 Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 106/390 (27%), Positives = 181/390 (46%), Gaps = 34/390 (8%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S++E+ D + + + +GII N+ + L ++++ P F P+ + + Sbjct: 187 SLIESNIDALMMTDPQGIISDVNKQMMALTARTRDELIGAPCKNFF--TDPASADAAIKR 244 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIII---KKLPFSSCYSLTMHDISEWKQEKNKLS 572 +LS E E ++S + ++ D++E K+ + L Sbjct: 245 VLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFA-AARDVTERKRFERTLE 303 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 E S KS+FLA +SHE+RTPL A+IGFSE +K+ G + + + Y I Sbjct: 304 EKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGNMTDAQR-RYIGDIFN 362 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG +L ++ND+LD+SK+E+G M L EPV LDE +S ++ +V+ A +RI ++ Sbjct: 363 SGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQAALQRIQLKLETEA 422 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS------------------- 733 + + D R KQI N+L+NA+ F+ GG + ++ S Sbjct: 423 DFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSFARTGVIEGDWPAHTFPLP 482 Query: 734 ----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + + L V DTG+G+ ++ K K F QI + + EGTGLGL + K + + + Sbjct: 483 SGDYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTGLGLAMVKQLTELHG 542 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 G + S G + P+ P +C Sbjct: 543 GCVAVASVKDLGARFVVWLPI----RPPEC 568 >gi|16125314|ref|NP_419878.1| sensor histidine kinase [Caulobacter crescentus CB15] gi|221234052|ref|YP_002516488.1| two component sensor histidine kinase [Caulobacter crescentus NA1000] gi|13422360|gb|AAK23046.1| sensor histidine kinase [Caulobacter crescentus CB15] gi|220963224|gb|ACL94580.1| two component sensor histidine kinase [Caulobacter crescentus NA1000] Length = 263 Score = 147 bits (372), Expect = 5e-33, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 129/224 (57%), Gaps = 1/224 (0%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K FL VSHE+RTPL A+IGFSE++ + +GPLG+P+Y EYA + SG +L +VN + Sbjct: 38 KRSFLRMVSHELRTPLNAVIGFSEILSQELYGPLGSPQYREYATIVHDSGLKLLKLVNQI 97 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 ++++++E ++ P SLDEA+ + + ++ + +++ A +P + AD R + Sbjct: 98 VELARLEGQASDIEMTPESLDEAIEDVVDSLRAEIARRDVIVHVVGAGALPSVQADSRGL 157 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 + + N+L NA+ +P+GG I ++ E+ + +RD G G+ + EL + ++PF Q Sbjct: 158 RTMLTNLLQNAVTHSPAGGVIHVTAARVDG-EIEIAIRDQGPGVESAELPRLLQPFEQGG 216 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + EG GLGLP+ + A G+ + S+ G L +I Sbjct: 217 CALTRTHEGAGLGLPIVDLLSRAMGGQLKLSSSLGAGFLARLIL 260 >gi|16124905|ref|NP_419469.1| sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] gi|221233626|ref|YP_002516062.1| PAS-family hybrid histidine kinase/receiver protein [Caulobacter crescentus NA1000] gi|13421867|gb|AAK22637.1| sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] gi|220962798|gb|ACL94154.1| PAS-family hybrid histidine kinase/receiver protein [Caulobacter crescentus NA1000] Length = 776 Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 100/356 (28%), Positives = 184/356 (51%), Gaps = 8/356 (2%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTE 515 + +AT D + ++R G IL + AV + GY ++L RK + + P ++ + Sbjct: 283 LAKATRDIVIEVDRRGNILFVSAAVEPVLGYAEGELLGRKAAKLTHPNDLPGLVQAFGAV 342 Query: 516 ILSLD-LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574 + + L LE L L R ++ + + + DI+E+K+ +++L+ Sbjct: 343 LADPEGLPPVLEARALHKDGHWVWLQGRPVLNRT--AGRIEGVIQDITEYKRARDELAAE 400 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 + AE+ +S FLA +SHE+RTPLTA+IGF+ +++ P +Y I +G Sbjct: 401 QARAEQALEARSAFLANMSHELRTPLTAVIGFAALVEGLDDLP---ETARDYVGRISTAG 457 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L ++ND+L++SK+E+G++ H P +L + + + + L+A EK + I + Sbjct: 458 KALLSVINDVLEMSKLETGQVQAHLAPCALAPLIDDTVRMFGLHAAEKNLQIAVRMVDPP 517 Query: 695 PRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 PR+L D V+Q+ +N++ NAI +T +G + EE+ + V+DTG+G+ + Sbjct: 518 PRVLMIDPDRVRQVLINLIGNAIRYTDAGSITLEVIWRGELEELFVAVKDTGIGIDPADQ 577 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K F QI +++ G+GLGL ++K +V+A G+ S P +G+ P Sbjct: 578 AHLFKRFSQIESARARSRGGSGLGLVISKGLVEAMGGRIGASSKPGEGSTFWFAIP 633 >gi|298675432|ref|YP_003727182.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288420|gb|ADI74386.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 851 Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 91/251 (36%), Positives = 140/251 (55%), Gaps = 2/251 (0%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+++ KQ ++ L AK IAE + K++FLA VSHE+RTPL +IIGFSE++ +R G L Sbjct: 602 DVTDKKQAEHALIEAKMIAESANRTKNEFLANVSHELRTPLNSIIGFSELMLTERRGEL- 660 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N Y N + SG +L ++N +LDISKIE+GKM+ + + + + + V++ + + A Sbjct: 661 NEYQKHYLNNVKNSGYHLLSLINKILDISKIEAGKMDYNPQNLPIIDLVNDVSNTMHPQA 720 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K I + T + I AD +K+ N+++NAI FTP G++ + + Sbjct: 721 LNKNIELETITDKYLGNIYADENKLKEALYNLVTNAIKFTPERGKVTLQVNKLDG-NIRF 779 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V+DTG+G+ + KPF QI S G GLGL L K V+ + G+ +I S Sbjct: 780 AVKDTGIGIPEDKQSDLFKPFTQIDTSASREYGGAGLGLALVKKFVEMHNGRIWIESEVN 839 Query: 800 KGTLIEIIFPL 810 KGT I P+ Sbjct: 840 KGTAIYFTIPV 850 >gi|309791219|ref|ZP_07685751.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] gi|308226781|gb|EFO80477.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] Length = 657 Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 83/240 (34%), Positives = 134/240 (55%), Gaps = 5/240 (2%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ S K +FLA +SHE+RTPL I+G +E++ +GP+ ++ E + SG +L Sbjct: 263 ERASRLKDEFLANMSHELRTPLNTILGRAEILAEGIYGPINQEQH-EAVRSMSESGRHLL 321 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++ND+LD+SKIE+GK+ L V + +I +V A +K I + +S + + I Sbjct: 322 ALINDILDLSKIEAGKLELQLSLVDMVTLCEASIRMVAQSALKKEIRLHSSISPQVDVIY 381 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAM 757 AD R +KQI +N+LSNA+ FTP+GGQ+ + T + V V DTG+G+ ++ + Sbjct: 382 ADERRLKQILVNLLSNAVKFTPAGGQVELEVQTDPDQQSVSFTVSDTGIGIAEADMARLF 441 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 +PF QI + +GTGLGL L + + +A+ G + S G+ + P HP Sbjct: 442 QPFVQIDAGLTRQHDGTGLGLVLVQRLTEAHGGSVAVQSQEGLGSSFTVRLPWL---HPQ 498 >gi|157803446|ref|YP_001491995.1| histidine kinase sensor protein [Rickettsia canadensis str. McKiel] gi|157784709|gb|ABV73210.1| Histidine kinase sensor protein [Rickettsia canadensis str. McKiel] Length = 497 Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 85/237 (35%), Positives = 141/237 (59%), Gaps = 6/237 (2%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ SS + F A +SHE+RTPL +IIGFSE++ ++R + Y I+ +G +L Sbjct: 263 ERTSSSNTKFFANISHELRTPLNSIIGFSEILMSER----DAEKSKNYIKDINDAGKHLL 318 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++ND+LD+SK + K+ + + L++ +S +++LV+ A++ + + + I Sbjct: 319 SMINDILDLSKASADKLKVDSMDLDLNKLISSSLALVKSRADQAEVALISKLPKEHVVIK 378 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAM 757 AD + +KQ+ LN+LSNA+ FT SGG + I+ +++ ++V DTG+G+ ++ K + Sbjct: 379 ADPKRLKQVLLNLLSNAVKFTNSGGSVTIALKKDELAKLVYIKVIDTGIGIEEKDIPKTL 438 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 FGQI + + EGTGLGLPL K +V+ GKF + S KGT + I F YD S Sbjct: 439 SVFGQIDSELSRKYEGTGLGLPLTKKLVELMKGKFDLQSKINKGTTVTITFT-YDDS 494 >gi|239908871|ref|YP_002955613.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798738|dbj|BAH77727.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1069 Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 118/384 (30%), Positives = 188/384 (48%), Gaps = 42/384 (10%) Query: 444 KRKMEIEVMQLCS----ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 +R+ E E+ Q + +L T G+A + N + L GY E IL + V Sbjct: 413 RRRTEAELRQTLAQRDALLGNTRIGLAT-TENAVCTDINAQGAALLGYTREAILGQSIAV 471 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--------KLLSLRIIIKKL-PF 550 + + + L E D +T G T+ E +++ LR+ K + P Sbjct: 472 LIPD---AAVYQSLAESSDHDF------VTQGFTRRECQVQRGDGEMIWLRLHGKSVRPE 522 Query: 551 SSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 + S+ DI+E K+ + L A+ AE+ S K FLA +SHEIRTPL A+IG S+ Sbjct: 523 APTISVVWAFDDITEEKRRQQHLEQARDQAEEASRAKGAFLAVMSHEIRTPLNAVIGLSD 582 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLD 665 + + P I++ I S +L +VND+LD SKIE+GK+ L HF+P +L Sbjct: 583 ALLEGQ----AAPEQIDHLRAIRESAGHLLGVVNDILDFSKIEAGKLVLERRHFDPRAL- 637 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ 724 V+EA+ V+L A++KR+ + + A N+P L D ++QI LN+L NA+ FT +G Sbjct: 638 --VAEALRAVELVASQKRLALSATIAPNVPAALRGDPGRLRQILLNLLGNAVKFTAAGSV 695 Query: 725 IIISTTHTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 + T +++ + + V DTG+G+ + + F Q P R GTGLGL Sbjct: 696 AVTVETVPADQTPAGRIGLAVAVTDTGIGLDPTRASELFERFNQGPGKAARRFGGTGLGL 755 Query: 779 PLAKAMVDANMGKFYIFSTPAKGT 802 ++K +V+ G + S G+ Sbjct: 756 AISKELVERMGGHIGVTSRQGAGS 779 >gi|71281538|ref|YP_270817.1| sensory box histidine kinase/response regulator [Colwellia psychrerythraea 34H] gi|71147278|gb|AAZ27751.1| sensory box histidine kinase/response regulator [Colwellia psychrerythraea 34H] Length = 1683 Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 108/387 (27%), Positives = 203/387 (52%), Gaps = 31/387 (8%) Query: 433 IEPEDVDTRINK-RKME--IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 I +D+ R+ + ++E +E + +C ++ +D + IN+ GI +L G+ Sbjct: 794 IALQDITLRVQETERLEKMLEHLPVCMVIMNQNDEVEQINQTGI---------ELLGFER 844 Query: 490 EDILRKPFTVFLEQNT----PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 ++I+ P +F+ Q +++ + E +D R +LE+ K KL+ ++ + Sbjct: 845 DEIVGNPVDLFIPQEQVESHKALLKKFFQEETVIDTR-SLERDFKVKHKSGKLIEIQAVY 903 Query: 546 KKLPF-SSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 + F + Y+ M DI+ +Q + L AK+I++ S KSDFLA +SHEIRTP+ AI Sbjct: 904 TPVHFHNGLYAAVMVRDITLDRQAEFALLEAKRISDDASKAKSDFLANMSHEIRTPMNAI 963 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 +G S + G + + Y + ++ +L I+ND+LD SKIE+GK+++ S Sbjct: 964 MGMSHL----ALGCELDRKPKNYVTKVYKAAESLLGIINDILDFSKIEAGKLDIEVIEFS 1019 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG 722 L + ++ +++ L A EK + + + ++P L D + QI +N+ NA+ FT G Sbjct: 1020 LHDTFADLANIIGLKAGEKNLELLFDISPDVPVNLKGDPLRLNQILINLAGNAVKFTEQG 1079 Query: 723 GQII-------ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 +I +ST+H + + V+D+G+GM + + +K + F Q +S + GTG Sbjct: 1080 QVVISVNVVTNVSTSHCDDINLEFSVKDSGIGMDDEQQKKLFQSFSQADSSTTRKYGGTG 1139 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGT 802 LGL ++K +V+ G+ ++ S +G+ Sbjct: 1140 LGLTISKKLVELMNGQIWLESKAGEGS 1166 >gi|197334363|ref|YP_002156093.1| sensor protein LuxQ [Vibrio fischeri MJ11] gi|197315853|gb|ACH65300.1| sensor protein LuxQ [Vibrio fischeri MJ11] Length = 692 Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 87/258 (33%), Positives = 144/258 (55%), Gaps = 6/258 (2%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y T DIS K+ + AK AEK + KS FLA +SHEIRTPL +I+G ++ Sbjct: 297 YRGTAKDISARKKRIKDIQTAKTEAEKANKAKSQFLAMMSHEIRTPLNSILGLVDIFH-- 354 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G L + +++ N ++ S L+L I++D+LDIS+IE+G L+ +P+ L +++ +I+ Sbjct: 355 --GSLLSEEQLDWLNQMESSSQLLLTIISDVLDISRIEAGTFVLNEQPIDLLRSLNTSIN 412 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + A +K I + + + N+P+ + AD + Q+ N++ NAI FT + G + + Sbjct: 413 FLDTRAKDKGITLTVTASQNVPKYVFADATRLSQVIFNLVGNAIKFT-NHGHVAVKIEKL 471 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 N + + V DTG+G+ + LE+ KPF Q +S + GTGLGL + K +V+ G Sbjct: 472 PNNSISISVSDTGIGIASTTLEQLFKPFVQADSSITRKYGGTGLGLAIIKRLVELMQGTI 531 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S G+ +I PL Sbjct: 532 TVESRLNVGSTFKITLPL 549 >gi|21228731|ref|NP_634653.1| sensory transduction histidine kinase [Methanosarcina mazei Go1] gi|20907241|gb|AAM32325.1| hypothetical sensory transduction histidine kinase [Methanosarcina mazei Go1] Length = 716 Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 88/254 (34%), Positives = 142/254 (55%), Gaps = 3/254 (1%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+E ++ KL K++AE + KS+FLA +SHE+RTPL +IIGFS+++ +Q +G Sbjct: 460 TFRDITE-RKAIEKLLQEKQVAEIANRTKSEFLANMSHELRTPLNSIIGFSDLLCDQIYG 518 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L N + ++Y N I +SG +L+++ND+LD+SK+E+GKM L + L + ++ SL+ Sbjct: 519 KL-NEKQLKYTNNISKSGKHLLNLINDILDLSKVEAGKMELDYREFELADRLNSVKSLLS 577 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A K I I + ++ I AD QI N++ NAI F+ + I E Sbjct: 578 PIAARKNIKIEINVNKDLTTICADEARFVQIMYNLVDNAIKFSFENNPVRIE-ARRKGEF 636 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + V D G+G+ + K +PF Q+ + +GTGLGL L K +V+ + G + S Sbjct: 637 LETTVTDIGIGIKPEDQHKLFQPFSQVAAFSSKKFQGTGLGLSLVKQIVNLHGGYVWFRS 696 Query: 797 TPAKGTLIEIIFPL 810 P +G+ P+ Sbjct: 697 IPGEGSTFAFAIPI 710 >gi|298674344|ref|YP_003726094.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298287332|gb|ADI73298.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 837 Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 109/356 (30%), Positives = 180/356 (50%), Gaps = 10/356 (2%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY---L 513 + E +D I + +G IL N + GY ++L T +N Y L Sbjct: 486 VTEQAADVIIAYDFDGNILYVNNLACEKLGYTKNELLSMNITDIDPENNIETYRKYWYGL 545 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 ++ S+ + +T K GS +L I + P +S D++ K+ + L + Sbjct: 546 SQNNSVHI-ETSRKRKDGSVYPAELRMTLIDLNGKPVILGFS---RDMTVQKEAEENLIN 601 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK AE S KSD LA V+HE+RTPLT+IIGFS+V+ + G L + + Y + + + Sbjct: 602 AKLEAEAASQAKSDILANVNHELRTPLTSIIGFSDVLLKGKAGDLNESQKM-YLSRVHNN 660 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +LD++ D+LD+SKIESGK L++E +S+ E V++ +Q + + K +++ + + Sbjct: 661 GKHLLDLITDILDLSKIESGKSGLNYERISIIELVNDLKEYIQPFVSNKVLILHSRVDSG 720 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 + I AD +KQI N+L NA+ FT G I + ++V V DTG+G+ Sbjct: 721 LNYIYADYIKIKQILSNLLYNAVKFTEEGS--ITLEVSQNEDDVQFSVIDTGIGIPKGSH 778 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 E F Q+ + + +GTGLGL L +V+ + G+ ++ S KG+ P Sbjct: 779 EAIFDSFKQLDSGPARKYQGTGLGLALVNKLVNMHGGQIWVESEIKKGSRFTFTIP 834 >gi|302878541|ref|YP_003847105.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302581330|gb|ADL55341.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 1115 Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 134/480 (27%), Positives = 221/480 (46%), Gaps = 72/480 (15%) Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 +T LD NN + L+R D T IA H + R+ + T + FE Sbjct: 424 ATSLDGIPRKINNEV----LWRRDGTSIAVEYSTHPMY--RDGRIEGTVVVFE------- 470 Query: 427 NMPQNGIEPEDVDTRIN-KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 D+ R +R+M+ + ++ + DG ++ EG +L N A + Sbjct: 471 ----------DITERQRMERQMQERDAVYSAAIKTSVDGFWTVDLEGYLLEVNDAYVQAS 520 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL-GS--------TKEE 536 GY +++L + ++ + D+ +EKI GS TK Sbjct: 521 GYTRDELLSMRVSQLEVIDSEA------------DVETRIEKIRREGSDEFESRHRTKAG 568 Query: 537 KLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 ++ + + + P + C+ + DI+E KQ+ L A++ AE + KSDFLA + Sbjct: 569 RIWDVSVAVSYAPIAGGRLFCF---VKDITERKQQAKLLEAAREKAESANRAKSDFLANM 625 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR---SGNLVLDIVNDLLDISK 649 SHEIRTP+ A+IGFSE+ L +P + ++ + S +L I+ND+LD SK Sbjct: 626 SHEIRTPMNAVIGFSEL-------ALDDPNPVSQRAHLQQIIESSRSLLGILNDILDFSK 678 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIA 708 IES +M L E ++LDE + + + + A E+ + + + +P IL D ++QI Sbjct: 679 IESRQMTLEMEVLNLDELLGQVRRMFVMQAKERTLDLVVAREAGVPNILTGDPLRLRQIL 738 Query: 709 LNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPN 765 N+L NAI FT G + + T++E V L V+D+G+GM+ +L +PF Q N Sbjct: 739 TNLLGNAIKFTNQGAVSLNVRAIQTNSENVTLDFCVKDSGIGMSAAQLASLFQPFVQADN 798 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYD----TSHPHDC 819 S R GTGLGL +++ + G + S G+ E+ P+ + SH D Sbjct: 799 SITRRFGGTGLGLTISRNLARLMDGDIRVDSVAGTGSEFHFEVTLPIANAMQLASHVKDV 858 >gi|213970477|ref|ZP_03398605.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] gi|213924795|gb|EEB58362.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] Length = 746 Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 129/438 (29%), Positives = 221/438 (50%), Gaps = 42/438 (9%) Query: 398 ARLHTIQWNREN-SLAMTFIPFEKANQFPEN--MPQNGIEPEDVDTRINKRKMEI----E 450 AR+H +Q N + +L +P Q PE + Q G + + +R+ + E Sbjct: 186 ARVHQVQRNAQRLALGHPLLP-----QPPEKDEIGQLGTRLVEAGQLLAERERALRDNEE 240 Query: 451 VMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSV 508 ++L I+E D GI ++R G + + N ++ GY ++I+ + F+VF L Q P Sbjct: 241 RLRL--IIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQH 298 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEW 564 + L E +++ R T E + K+ ++I S+ +S DIS+ Sbjct: 299 PDMALHEA-TVNGRYTEE--SWRRRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDR 355 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQRFGPLG 619 + + L A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ +QR Sbjct: 356 RVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQR----- 410 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +I R+G +L ++N++LDI++IE+G ++L EPVSL + E + LV A Sbjct: 411 -----PQVGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMA 465 Query: 680 NEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + I L + + ++AD + + Q+ LN+LSNAI + GQ+ I S E V Sbjct: 466 ADGNIELKELPYLPDELGVIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDR-SAEHVT 524 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V DTG G+ L + KPF ++ + + EGTGLGL L+K+M++ G + +T Sbjct: 525 VSVVDTGYGIAPERLGQLFKPFERLDANPSV--EGTGLGLALSKSMLEMMKGTLSVQTTQ 582 Query: 799 AKGTLIEIIFPLYDTSHP 816 +G + P P Sbjct: 583 NEGCRFTLALPFVAVHAP 600 >gi|117929307|ref|YP_873858.1| PAS/PAC sensor hybrid histidine kinase [Acidothermus cellulolyticus 11B] gi|117649770|gb|ABK53872.1| PAS/PAC sensor hybrid histidine kinase [Acidothermus cellulolyticus 11B] Length = 637 Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 87/259 (33%), Positives = 151/259 (58%), Gaps = 6/259 (2%) Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + + DISE + +L AK+ A+ S+ KSDFL+R+SHE+RTPL I+GFS++++ Sbjct: 234 TAAVIVFRDISERLALEAELVRAKEAADAASAAKSDFLSRMSHELRTPLNVILGFSQLLQ 293 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 +R E+ N I ++G +LD++N++LDI++IESG++ L E VSL + + E Sbjct: 294 MERL----TDEQQEWVNQIFKAGRHLLDLINEVLDITRIESGRLALSLEAVSLRDVIGET 349 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + + A E+ + ++ + AD + ++Q+ LN++ NAI + GG +++S Sbjct: 350 MVALAPLAAEREVTADWVIEDDDVTVRADRQRLRQVMLNLVVNAIKYNRRGGTVLVSARR 409 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 ++ +I RV DTG+G+ +E+ PF ++ + I EGTG+GLPL +V G+ Sbjct: 410 CADRALI-RVADTGIGIAPEHIERLFVPFDRL-GADAIDAEGTGVGLPLTLRLVQVMDGE 467 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + STP G++ + PL Sbjct: 468 LTVDSTPGDGSVFTVALPL 486 >gi|329910831|ref|ZP_08275387.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium IMCC9480] gi|327546070|gb|EGF31141.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium IMCC9480] Length = 1228 Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 124/401 (30%), Positives = 202/401 (50%), Gaps = 45/401 (11%) Query: 438 VDTRINK-RKMEIEVMQ--LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 VD RI K R+ +I + L +LE+ G+A++N + ++ NR L GYP D+ + Sbjct: 424 VDNRIGKARQQQIASLNEFLNEVLESLPFGVAVLNGQQQVILRNRLFGSLQGYP-PDLFQ 482 Query: 495 KPFTVFLE-------------QNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLL 539 K +F E ++ V+ YL I S RQ+ +E+ G+ E Sbjct: 483 KSPLMFAEMVRFSYEQGHYPQRSYDDVLAEYLAMIGS---RQSVRIERSLPGNQYLE--- 536 Query: 540 SLRIIIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 I+ P S+ + LT DI+ +++ + LS A+ AE + KSDFLA ++HE+RT Sbjct: 537 -----IRGQPISADWILLTYTDITAFRRAEQALSQARTEAETANLAKSDFLANMTHELRT 591 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PL A+IG + ++ PL N +YA+ I S + ++ND+LD+SK+E+ ++ + Sbjct: 592 PLNAVIGLARLLTES---PL-NAWQRDYADKIALSAQSLQVLINDILDLSKMEANQLRIE 647 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIH 717 P SL+ + A S++ + +K I + A ++P ++ D V+QI LN++SNA+ Sbjct: 648 QIPFSLNLLLRTAASVLGVGVGQKAIAVVLDLAPDVPDALVGDPLRVQQILLNLISNALK 707 Query: 718 FTPSGGQIIISTTHTSNEEVI--------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 FT G+I++S S V + VRDTG+G+ LE F Q S Sbjct: 708 FTER-GEIVVSVRCQSMMPVAAGAPILLQIAVRDTGIGIAVAALETIFNAFIQADASTSR 766 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL ++ +V G+ + STP +G+ PL Sbjct: 767 LYGGTGLGLTISNRLVTMMGGQISVDSTPGQGSEFRFSLPL 807 >gi|20091382|ref|NP_617457.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19916518|gb|AAM05937.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 740 Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 86/254 (33%), Positives = 144/254 (56%), Gaps = 3/254 (1%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T D++E ++E KL K++AE + KS+FLA +SHE+RTPL +IIGFS+++ + +G Sbjct: 464 TCRDVTE-RKEAEKLLQEKQVAEVANRTKSEFLANMSHELRTPLNSIIGFSDLLYEKIYG 522 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L N + ++ I RSG +L+++ND+LD+SK+E+GK+ L ++ L ++ +L+ Sbjct: 523 DL-NEKQLKAVGNISRSGKHLLNLINDILDLSKVEAGKLELEYKEFELSSKLNSIKNLLS 581 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A+ K I ++ ++ I AD QI N+L NAI F+ G + I + Sbjct: 582 PIADRKMIEVQIQVDESLNTIRADEARFAQIMYNLLDNAIKFSKENGLVEIDAKR-KGDT 640 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V + V+D G+G+ + K KPF QI + + +GTGLGL L K +V+ + G + S Sbjct: 641 VEITVKDYGIGIKVEDQSKLFKPFSQIASFSSKKVQGTGLGLALVKQIVNLHGGYIWFNS 700 Query: 797 TPAKGTLIEIIFPL 810 +G+ P+ Sbjct: 701 RIGEGSTFAFTIPI 714 >gi|312960964|ref|ZP_07775469.1| two-component sensor/regulator [Pseudomonas fluorescens WH6] gi|311284622|gb|EFQ63198.1| two-component sensor/regulator [Pseudomonas fluorescens WH6] Length = 470 Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 88/270 (32%), Positives = 144/270 (53%), Gaps = 32/270 (11%) Query: 566 QEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +EKN +L HA ++ KS+FLA +SHE+RTPL A+IGFSE +K+ G + + + Sbjct: 197 EEKNLELEHASRM-------KSEFLATMSHELRTPLNAVIGFSEALKDGLVGAMSDTQR- 248 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EY I SG +L ++ND+LD+SK+E+G M+L EPV L ++ ++ +V+ A ++RI Sbjct: 249 EYIGDIFTSGQHLLSLINDILDLSKVEAGMMDLELEPVELAGLLANSLLIVREKAAQQRI 308 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI------ 738 ++ ++ ++ D R KQI N+L+NA+ F+ G + ++ ++V Sbjct: 309 QLKLDSQGDLGTLMLDQRKTKQIVYNLLANAVKFSAHAGFVHLAVCEVDRDQVGLVPGDW 368 Query: 739 -----------------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 L V DTG+G+ ++ K K F QI +S + EGTGLGL + Sbjct: 369 PVYGFALQPSVHQRFLELSVSDTGIGIAADDMGKLFKAFSQIDSSLARKFEGTGLGLAMV 428 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 K + D + G + S G + PL+ Sbjct: 429 KQLTDLHGGSVAVASREGLGARFVVWLPLH 458 >gi|209966659|ref|YP_002299574.1| histidine protein kinase DivJ [Rhodospirillum centenum SW] gi|209960125|gb|ACJ00762.1| histidine protein kinase DivJ [Rhodospirillum centenum SW] Length = 710 Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 90/257 (35%), Positives = 137/257 (53%), Gaps = 9/257 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D+SE + +L + AE+ +S FL+ V HE+RTPL AIIGFSE+++++ G L Sbjct: 445 RDLSELSGLRERLQEVEAAAERAGRARSRFLSAVGHELRTPLNAIIGFSEILRDELLGSL 504 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 GN RY +YA I G +L + NDL+D+++IE+G+++L + V + L Sbjct: 505 GNNRYRDYAQDIHDGGLHLLRLTNDLVDLARIEAGQLDLRESWTDVQGLVDRCLRLGATR 564 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A + + R+LAD ++QI N+L NAI + G + + S E I Sbjct: 565 AAGLGVTLGADIRPPGLRVLADEARLRQILANLLDNAIRHSERGSHVQV---RASGEGGI 621 Query: 739 --LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT----GLGLPLAKAMVDANMGKF 792 L+V D GVGMT E+ A++PFG+ P + + G GLGLPL + V+A+ G Sbjct: 622 FTLQVADQGVGMTEKEVRAALRPFGEAPAAGEAEGTARQTAPGLGLPLVRGYVEAHGGHL 681 Query: 793 YIFSTPAKGTLIEIIFP 809 I S P GT + + P Sbjct: 682 AIASDPGAGTTVTVTLP 698 >gi|301383865|ref|ZP_07232283.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato Max13] gi|302060595|ref|ZP_07252136.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato K40] gi|302134767|ref|ZP_07260757.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 775 Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 129/438 (29%), Positives = 221/438 (50%), Gaps = 42/438 (9%) Query: 398 ARLHTIQWNREN-SLAMTFIPFEKANQFPEN--MPQNGIEPEDVDTRINKRKMEI----E 450 AR+H +Q N + +L +P Q PE + Q G + + +R+ + E Sbjct: 215 ARVHQVQRNAQRLALGHPLLP-----QPPEKDEIGQLGTRLVEAGQLLAERERALRDNEE 269 Query: 451 VMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSV 508 ++L I+E D GI ++R G + + N ++ GY ++I+ + F+VF L Q P Sbjct: 270 RLRL--IIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQH 327 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEW 564 + L E +++ R T E + K+ ++I S+ +S DIS+ Sbjct: 328 PDMALHEA-TVNGRYTEE--SWRRRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDR 384 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQRFGPLG 619 + + L A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ +QR Sbjct: 385 RVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQR----- 439 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +I R+G +L ++N++LDI++IE+G ++L EPVSL + E + LV A Sbjct: 440 -----PQVGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMA 494 Query: 680 NEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + I L + + ++AD + + Q+ LN+LSNAI + GQ+ I S E V Sbjct: 495 ADGNIELKELPYLPDELGVIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDR-SAEHVT 553 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V DTG G+ L + KPF ++ + + EGTGLGL L+K+M++ G + +T Sbjct: 554 VSVVDTGYGIAPERLGQLFKPFERLDANPSV--EGTGLGLALSKSMLEMMKGTLSVQTTQ 611 Query: 799 AKGTLIEIIFPLYDTSHP 816 +G + P P Sbjct: 612 NEGCRFTLALPFVAVHAP 629 >gi|152992352|ref|YP_001358073.1| hypothetical protein SUN_0758 [Sulfurovum sp. NBC37-1] gi|151424213|dbj|BAF71716.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 501 Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 89/242 (36%), Positives = 132/242 (54%), Gaps = 6/242 (2%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A A+ S KS+FLA +SHEIRTP+T I+GF E + + +P + N I Sbjct: 112 LQQANIDAQIASETKSEFLANMSHEIRTPMTGILGFVEQLAKKE----NDPERLRQFNII 167 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 +SG +L I+ND+LD+SKIESGKM L +P L + + I+L K I + Sbjct: 168 TKSGQTLLSIINDILDLSKIESGKMTLEPQPTDLHKLFDDTITLFDELIKSKNIDLHKEI 227 Query: 691 ANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGM 748 +P+ L D KQ+ LN+LSNAI FTPSGG I + ++ +++ V+DTG+G+ Sbjct: 228 DEKLPKCLIIDQLRFKQVILNLLSNAIKFTPSGGSISLQASYDHTTQILQCAVQDTGLGI 287 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 LEK F Q S R GTGLGL ++ ++ G+ ++ ST +G+ + Sbjct: 288 GKEHLEKIFHAFAQEDTSTTRRYGGTGLGLTISSKLLHMMKGQIHVQSTLGEGSRFYLDV 347 Query: 809 PL 810 P+ Sbjct: 348 PV 349 >gi|83311112|ref|YP_421376.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82945953|dbj|BAE50817.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 848 Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 93/248 (37%), Positives = 141/248 (56%), Gaps = 7/248 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K AE+ S KS+FLA +SHE+RTPL IIGFSE+I+++ + E A+ Sbjct: 606 RLDEARKRAEEASRMKSEFLANMSHELRTPLNGIIGFSELIRDE----AADDETRENADI 661 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S +L++VN +LDI+KIE+G M L + V L V+EA ++ Q A K I + + Sbjct: 662 IEKSSRHLLELVNSILDIAKIEAGAMTLSIQEVKLAPLVAEAAAVHQSAAQGKGITLSSR 721 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 A + P I AD ++QI N+LSNA+ FT + G++ +S + ++ +V DTG G+ Sbjct: 722 VAGDCPATIQADPLRLRQILHNLLSNAVKFTET-GEVALS-VDLQPDHLVFKVSDTGAGI 779 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 L + F Q+ + GTGLGL LA+ +V+ G + ST KGT Sbjct: 780 PEAMLHAIFEKFRQVDSFLTRSHSGTGLGLTLARHLVELMGGVIGVESTVGKGTTFHFTL 839 Query: 809 PLYDTSHP 816 PL+ T P Sbjct: 840 PLHQTETP 847 >gi|332702880|ref|ZP_08422968.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553029|gb|EGJ50073.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 558 Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 112/379 (29%), Positives = 191/379 (50%), Gaps = 31/379 (8%) Query: 457 ILEATSDGIAII----NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L+A SD I ++ NR I+ N+A +L G + +R L T + Sbjct: 45 LLDAVSDAILLVDIASNR---IIDLNKAACRLIGRCKPEAVRISLRDALPGETADAWGEH 101 Query: 513 LTEILSLDLRQTLEKITLG-STKEEKLLSLRIIIKKLPFSSC-YSLTM-HDISEWKQEKN 569 L+ L T E+ + + ++ L I + F S Y++ + DI++ K+ ++ Sbjct: 102 LSAGGEAGL-PTEERFQMSMRASDGHIVPLEINLSLHYFESKRYAVAVVRDITDRKKAED 160 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK+ AE S KS+FLA +SHEIRTP+ IIG E+ + + EY + Sbjct: 161 ELKQAKEAAESASRTKSEFLANISHEIRTPMNGIIGMVELA----LLTASDVQTREYLGF 216 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQLYANEKRILI 686 I +SG +L+I+ND+LD SKIE+G++ L F+P + E +S + A EK + + Sbjct: 217 IKQSGLALLNIINDILDFSKIEAGRLQLDLREFDPRHMVETTLRPLSYM---AKEKDLPL 273 Query: 687 RTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--------EV 737 R S ++P R+ D ++Q+ N++ NAI FT G +++ T E ++ Sbjct: 274 RWSIDPDVPERLAGDQGRIRQVLTNVVGNAIKFTER-GSVVVRVDRTEPEGLAGGESVQL 332 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + VRDTG+G+ + EK + F Q+ S ++ G GLGL +++ +V+ G+ ++ S Sbjct: 333 LFSVRDTGIGIPADKQEKIFESFSQVGTSAHMKYGGAGLGLSISRQLVEMMGGRIWVESD 392 Query: 798 PAKGTLIEIIFPLYDTSHP 816 P KG+ L + P Sbjct: 393 PGKGSTFHFTVRLSRAAGP 411 >gi|322421479|ref|YP_004200702.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320127866|gb|ADW15426.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 484 Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 92/276 (33%), Positives = 151/276 (54%), Gaps = 30/276 (10%) Query: 560 DISEWKQEKNKLSHAKKI-AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++ +++ ++H KI AE+ S KSDFLA +SHE+RTPL +++GFSE++ ++ FG L Sbjct: 205 DMNAELEKQQIIAHEAKIQAEEASRAKSDFLANMSHELRTPLNSVLGFSELLTDELFGHL 264 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N + EY I SG +L+++ND+LD+SK+E+GK L V E ++ ++L+Q Sbjct: 265 -NAKQHEYVKNILFSGRHLLNLINDILDLSKVEAGKSVLEPSMVKFREVIAGTLTLLQ-- 321 Query: 679 ANEKRILIRTSFANNIP-----RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 EK + +P ++AD R +KQI N+LSNA+ FTP+GG I ++ S Sbjct: 322 --EKALKHDVHLGLELPVDCDIELMADERKLKQIMFNLLSNAVKFTPAGGTIRVTAQRMS 379 Query: 734 NEEVI-------------------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 +++ + V D+G+G+ ++ K K F Q+ + EGT Sbjct: 380 RSDLLAAGKYQPGERQPEAEDFVEITVEDSGIGIKREDIPKLFKEFSQLDSPYTKEYEGT 439 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GLGL L K +V+ + G+ + S +G+ PL Sbjct: 440 GLGLALTKRLVELHGGQVGVESEIGQGSRFYFAIPL 475 >gi|124268351|ref|YP_001022355.1| signal transduction histidine kinase-like protein [Methylibium petroleiphilum PM1] gi|124261126|gb|ABM96120.1| signal transduction histidine kinase-like protein [Methylibium petroleiphilum PM1] Length = 1077 Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 86/264 (32%), Positives = 156/264 (59%), Gaps = 8/264 (3%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DISE + HA++ AE + K++FL+R+SHE+RTPL A++GF++++ R P Sbjct: 673 VEDISE-HLRLEEAEHARESAETANRAKNEFLSRMSHELRTPLNAMLGFAQLLDLDRGEP 731 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 L + R+ + I ++G +L+++ND+LD+S+IESG ++L E +SL+ ++ +++LV+ Sbjct: 732 L-HERHRMWVTQIQQAGWHLLEMINDVLDLSRIESGTLSLQVESLSLEPLIAASMALVEP 790 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A + + + + A + P ++L D VKQI N+LSNA+ + G++ +ST T + + Sbjct: 791 QARGRGLTLVRTMAEHAPLQVLGDATRVKQILTNLLSNAVKYNREAGEVRVSTRRTEDRD 850 Query: 737 ----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + L V DTG+G+ L + +PF ++ ++ EGTG+GL +AK + + G Sbjct: 851 GTPMLELDVCDTGLGIEPQLLTQLFQPFNRL-GRERGATEGTGIGLVIAKLLAERQGGSL 909 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHP 816 + S P G+ + PL + P Sbjct: 910 KVRSEPGVGSTFTLRLPLDSQARP 933 >gi|163760978|ref|ZP_02168056.1| two component sensor kinase/response regulator hybrid [Hoeflea phototrophica DFL-43] gi|162281759|gb|EDQ32052.1| two component sensor kinase/response regulator hybrid [Hoeflea phototrophica DFL-43] Length = 1337 Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 90/270 (33%), Positives = 146/270 (54%), Gaps = 10/270 (3%) Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 K+ S+ T DI+ KQ + +L AE KS+FLA +SHEIRTP+ ++G Sbjct: 731 KVGSSNAIIATFSDITATKQREAELHDLLGKAETADRAKSEFLANMSHEIRTPMNGVLGM 790 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 +E++ + R +A+ I +SG +L I+ND+LD SKI++G++ L +P L E Sbjct: 791 AELLSRTEL----DTRQRTFADIIVKSGTALLTIINDILDFSKIDAGQLTLESQPFDLRE 846 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQI 725 A+ + +L+ A EK I + +P L D+ ++Q+ N++ NAI FT +G + Sbjct: 847 AIEDVATLISSRAAEKDIELIVRIDPALPDCLVGDVGRIRQVMTNLVGNAIKFTETGHVL 906 Query: 726 IISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 I T ++E ++ LRV DTG+G+ +L+ F Q+ S R EGTGLGL + Sbjct: 907 IEVTGSPASEGSVDLTLRVHDTGIGIPPEKLDAVFDKFSQVDTSSTRRHEGTGLGLAITS 966 Query: 783 AMVDANMGKFYIFSTPAKGTL--IEIIFPL 810 +V G STP +G++ ++I P+ Sbjct: 967 RLVALMDGTISAESTPGEGSVFCVKITMPV 996 >gi|212637156|ref|YP_002313681.1| sensory box histidine kinase/response regulator [Shewanella piezotolerans WP3] gi|212558640|gb|ACJ31094.1| Sensory box histidine kinase/response regulator [Shewanella piezotolerans WP3] Length = 1771 Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 107/376 (28%), Positives = 185/376 (49%), Gaps = 16/376 (4%) Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 E + +D + KR+ ++ + GI ++ G+IL N S+ +++ Sbjct: 899 ERKQIDKELAKREAHFR-----ALFDNAGIGIVNVDERGLILDCNEQFSQYVQLSSDELN 953 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL---LSLRIIIKKLPF 550 F + ++ ++++ D +I L S + + L+L + K Sbjct: 954 GSSFFDYQHRDDQQTAKQLFSQLMGNDDSSMTAEIRLLSQSGDVMWMDLTLTGLQDKHGT 1013 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + L+M +I+ KQ N+L AK A+ S KSDFLA +SHEIRTP+ AIIG S++ Sbjct: 1014 LNSAVLSMANITSLKQISNELKQAKDSADAASKAKSDFLANMSHEIRTPMNAIIGMSQLC 1073 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + + Y IDR+ +L I+ND+LD SKIE+GK+++ L+ + + Sbjct: 1074 LQTEL----DKKQQNYVQKIDRASKSLLGIINDILDFSKIEAGKLDIESVSFQLETMLED 1129 Query: 671 AISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-IS 728 + + A +K++ + + A NIPR L D + Q+ +N+++NA+ FT G ++ IS Sbjct: 1130 LSDMFSVKAADKQLELLFAVAPNIPRQLEGDPLRLSQVLINLMNNAVKFTDQGEVLLSIS 1189 Query: 729 TTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 ++ + LR VRD G+G+T + K K F Q S + GTGLGL + K +V+ Sbjct: 1190 QLERVDDAITLRFSVRDNGIGLTEDQRNKLFKSFSQADTSTTRKYGGTGLGLAICKQLVE 1249 Query: 787 ANMGKFYIFSTPAKGT 802 G+ + S G+ Sbjct: 1250 LMGGEIGVESQFGNGS 1265 >gi|90021885|ref|YP_527712.1| sensor/response regulator hybrid [Saccharophagus degradans 2-40] gi|89951485|gb|ABD81500.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans 2-40] Length = 942 Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 87/236 (36%), Positives = 138/236 (58%), Gaps = 8/236 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA SHEIRTPL I+GFSE+++ N + ++Y Sbjct: 257 ELDIARKSALQASRVKSEFLANTSHEIRTPLNGILGFSELLRKTEL----NNQQVDYLTT 312 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+ S +L I+ND+LD S++E G + L ++PV + + + + + L ANEK I + T Sbjct: 313 IEESAKGLLTIINDILDFSRLEIGTLTLEYKPVKIRQLIEDTLKLQTPAANEKNIRMLTI 372 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVIL--RVRDTG 745 +++P +L D +KQ+ N++SNAI FT G ++ +S +S + L RV D+G Sbjct: 373 IDHDVPENLLGDPLRLKQVLSNLVSNAIKFTDVGYILLGVSKDQSSENQFTLKFRVTDSG 432 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +G++ + E+ PF Q+ +S+ GTGLGL +AK +VD G + ST KG Sbjct: 433 IGLSQDQQERLFDPFTQLDSSESRLHGGTGLGLAIAKGLVDRMNGTIGVESTLGKG 488 >gi|85703660|ref|ZP_01034764.1| two-component hybrid sensor and regulator [Roseovarius sp. 217] gi|85672588|gb|EAQ27445.1| two-component hybrid sensor and regulator [Roseovarius sp. 217] Length = 711 Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/243 (34%), Positives = 136/243 (55%), Gaps = 6/243 (2%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L A+++A + KSDFLA++SHEIRTP+ IIG ++++ P Y + Sbjct: 193 TRLEEAREVAVIANDAKSDFLAKMSHEIRTPMNGIIGMADMLSETDL----TPEQDSYVS 248 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + RSG+ +L I+ND+LD SKIE+GK+ L EP L E V + L+ A K +++ + Sbjct: 249 TMVRSGDALLTIINDILDFSKIEAGKLTLASEPYRLREIVEDVTQLLAPLAARKGLMLYS 308 Query: 689 SFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 A ++P I L D ++QI +NI NA+ FT G + + + ++++RV D+GVG Sbjct: 309 DVAPDLPEIMLGDAGRLRQILVNIAGNAVKFTLE-GHVALRASAGGPGQIVIRVHDSGVG 367 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + + +K F Q+ N+ GTGLGL +++ +V G + S +GT +I Sbjct: 368 IPSDQQDKVFTAFEQVDNTATRSFGGTGLGLAVSRQLVTLMGGTLTLHSREGEGTRFDIT 427 Query: 808 FPL 810 PL Sbjct: 428 LPL 430 >gi|148284508|ref|YP_001248598.1| PleC-like histidine kinase [Orientia tsutsugamushi str. Boryong] gi|146739947|emb|CAM79973.1| PleC-like histidine kinase [Orientia tsutsugamushi str. Boryong] Length = 515 Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 99/313 (31%), Positives = 168/313 (53%), Gaps = 6/313 (1%) Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT- 557 V + +P +++H + L + T + + + + ++ L L ++ F S++ Sbjct: 203 VLIHCESPIILDHAVIAFLKITYNATQQWMYINNISKQVLTILLLMSLIFFFIIKSSISN 262 Query: 558 MHDISEWKQEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + I + NK L A++ AEKE+ K+ FLA VSHE+RTPL+AIIG +E+I + Sbjct: 263 VQKIINVQLNANKYLEQARQKAEKENIAKNKFLANVSHELRTPLSAIIGLTEIILSNSHC 322 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + Y Y I SG +L ++ND+LD SK + K+ + V L++ + ++ L+ Sbjct: 323 KIN---YYNYIRDIHNSGKHLLAVINDILDFSKASANKLTVENVAVDLNKLAASSLRLMY 379 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A + I + + F + I AD + +KQ N+LSN+I FTPS G I + + + Sbjct: 380 TKAKKAGIKLISKFPPDQIIINADAKRLKQALFNLLSNSIKFTPSKGSITLEISMNELKS 439 Query: 737 VI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++ ++V DTG+G+ ++ KA+ F Q+ N+ + EGTGLGLPL K ++ G F I Sbjct: 440 LVYIKVIDTGIGIAEQDIPKALSSFEQVNNNLSNQREGTGLGLPLTKKLIYLMEGDFEIT 499 Query: 796 STPAKGTLIEIIF 808 S +GT + I F Sbjct: 500 SNIGQGTTVTITF 512 >gi|251778814|ref|ZP_04821734.1| Two component system histidine kinase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083129|gb|EES49019.1| Two component system histidine kinase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 681 Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 91/240 (37%), Positives = 139/240 (57%), Gaps = 2/240 (0%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A K ++ KS FLA +SHE+RTPL+AII SE++K + FG L N + +++ I Sbjct: 430 LREAIKGLKEADKIKSLFLANMSHELRTPLSAIITCSEILKEEIFGEL-NSKQLKHVTNI 488 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SGN +L ++N++LDISKIE+GKM L S+ + E+ S+++ A K I I + Sbjct: 489 LNSGNHLLHLINNVLDISKIEAGKMKLTIGEYSISDIAMESFSVLKSLAYRKNIEINLNI 548 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + I D +KQI N++SN+I FT GG+I I+ T + L + D G+G+ Sbjct: 549 EPSDFIIKIDANKLKQILYNLISNSIKFTEEGGKIQINITKNL-AYMKLIIEDNGIGIKK 607 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + ++ F Q+ NS + + EGTGLGLPL K +V+ + G+ ++ S GT I I P Sbjct: 608 EDQKRIFNEFEQVDNSYERKYEGTGLGLPLTKKLVEMHGGEIFLISNIGTGTKIIITIPF 667 >gi|218670486|ref|ZP_03520157.1| putative two-component regulator sensor histidine kinase protein [Rhizobium etli GR56] Length = 278 Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 61/124 (49%), Positives = 84/124 (67%) Query: 74 FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133 FVF P R RF W IDA G E+S E + +G +A +IG D++ + ++DP+ + Sbjct: 88 FVFRPNSRATRFVWKIDAEGRFNEVSHEFAEAVGPHASAIIGSAFSDIAALFNLDPDGKL 147 Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 + L R++TW GKT LWP+EGT+L VP+DLAALP Y+RNR+F GFRGFG+V ++ DP Sbjct: 148 SEALARRDTWSGKTILWPVEGTSLVVPVDLAALPTYTRNRDFDGFRGFGVVRLSDAQEDP 207 Query: 194 RALG 197 ALG Sbjct: 208 LALG 211 >gi|17230612|ref|NP_487160.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132215|dbj|BAB74819.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1286 Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 80/250 (32%), Positives = 142/250 (56%), Gaps = 7/250 (2%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q +L+ + + + + K +FLA +SHE+RTPL AI+G +E ++ FG + N ++ + Sbjct: 880 QSNQQLAISNQELARATRLKDEFLANMSHELRTPLNAILGMTEGLQEGVFGMINNKQF-K 938 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I+RS + +LD++ND+LD++KIE+G++ L +S+ ++ ++ A +KRI Sbjct: 939 ALETIERSSSHLLDLINDILDVAKIEAGQIKLDCTTISVANLCESSLVFIKQQALQKRIQ 998 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH------TSNEEVIL 739 + N+P + D R ++Q+ +N+L+NA+ FTP G+I + T T + + Sbjct: 999 VEIKIPFNLPDLFVDERRIRQVLINLLNNAVKFTPEAGRISLEVTQLSPDISTVQNFLQI 1058 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ + K +PF QI ++ + EGTGLGL L K +V+ + G+ + S Sbjct: 1059 AVIDTGIGIMQENINKLFQPFIQIDSALNRQYEGTGLGLALVKKIVELHGGRVGLTSELG 1118 Query: 800 KGTLIEIIFP 809 G+ I P Sbjct: 1119 IGSCFTIELP 1128 >gi|218780746|ref|YP_002432064.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218762130|gb|ACL04596.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 485 Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 92/260 (35%), Positives = 148/260 (56%), Gaps = 20/260 (7%) Query: 556 LTMH--DISEWKQEKNKLSHAKKIA-EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 LT+H + E ++E+++ H ++A E KSDFL+ VSHE+RTPL AI+GFS+V++ Sbjct: 196 LTVHYKKLQEREEEQSQRVHRLRLALEHAKRAKSDFLSSVSHELRTPLNAILGFSQVLQE 255 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + FG L N + +Y N I SG +LD++ND+LD+S++ESG+M L EP+ + + ++ Sbjct: 256 EYFGGL-NTKQKQYVNDILESGKHLLDLINDILDLSRVESGEMKLEVEPLLISFILESSL 314 Query: 673 SLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 L++ A + I I ++ I ILAD +KQI N+LSNA FTP G I + Sbjct: 315 HLIREKAFKHGIEITVDVSDEIREMAILADHTKLKQILFNLLSNAAKFTPDKGAICVGAR 374 Query: 731 HTSN--------------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 + + + VRD+G+G+ + ++ F Q+ + GTGL Sbjct: 375 VIHDPVDGGGSQDLDDNPGWIEVFVRDSGIGIEGDDKKRVFDDFYQVSAGLSGKTPGTGL 434 Query: 777 GLPLAKAMVDANMGKFYIFS 796 GLPLAK +V+ + G+ ++ S Sbjct: 435 GLPLAKRLVELHGGRIWVES 454 >gi|254505648|ref|ZP_05117794.1| sensor protein GacS [Vibrio parahaemolyticus 16] gi|219551301|gb|EED28280.1| sensor protein GacS [Vibrio parahaemolyticus 16] Length = 870 Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 92/255 (36%), Positives = 145/255 (56%), Gaps = 14/255 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+ K + KL AK+ AE + KS FLA +SHEIRTPL IIG +E++ + + N Sbjct: 356 IARQKAYQTKLVEAKEHAEAANQAKSVFLANMSHEIRTPLNGIIGMTEILSDSQL----N 411 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 E N ID S + +L ++ND+LD+SKIESG + L +L E + + +++V A Sbjct: 412 GSQKEILNDIDASSHALLVLINDILDLSKIESGNLVLSPHTANLREIIFDTMNMVNAQAL 471 Query: 681 EKRILIRTSFANNIPRILADLRS--VKQIALNILSNAIHFTPSGGQII---ISTTHTSNE 735 ++ + + FA+++P + A++ VKQI +N+LSNAI F+ +G ++ + T H N Sbjct: 472 KQEVTLEVEFADDVP-VYAEMDEFRVKQILMNLLSNAIKFSANGSVLVRHSVDTQHRLNI 530 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 EV+ DTGVG+ +L KPF Q + R GTGLGL + + +V+ G+ + Sbjct: 531 EVL----DTGVGIAADKLSDIFKPFTQEDGTITRRFGGTGLGLAICRQLVELMRGELVVE 586 Query: 796 STPAKGTLIEIIFPL 810 S +G+ +I PL Sbjct: 587 SNVGEGSRFTVILPL 601 >gi|152995670|ref|YP_001340505.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150836594|gb|ABR70570.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 789 Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 92/282 (32%), Positives = 155/282 (54%), Gaps = 9/282 (3%) Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK-LSHAKKIAEKESSHKSDFLARV 592 KE + ++L+ K L +S+ ++ QE+ K L +AK+I E+ KS F+AR+ Sbjct: 138 KEAETVALKANEKLLEYSTALETINQELDRKVQERTKELENAKRIVEESLEAKSSFVARM 197 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHEIRTP+ A+IG S + N +Y N I SG +L +VND+LD SKIE+ Sbjct: 198 SHEIRTPINAVIGLSHLALKTSL----NHEQQDYINTILSSGENLLSLVNDVLDFSKIEA 253 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNI 711 GKM + P S V AI++ + A EK++ + + ++ P +L D ++Q+ +N+ Sbjct: 254 GKMGIEEVPFSPKSIVQHAINMNAIKAEEKKLTVTVDISPSLPPMLLGDPLHIQQVLVNL 313 Query: 712 LSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 ++NA+ FT GG + + T ++ V+LR V DTG+G++ L++ + F Q +S Sbjct: 314 VTNAVKFTERGGVCVRMYTDENDDKSVLLRCDVIDTGIGISKAYLDQLFQSFHQADDSVT 373 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + GTGLGL +++ + G ++ S +G+ + PL Sbjct: 374 RKFGGTGLGLTISRQLCSLMSGDIWVHSELGQGSTFSFVLPL 415 >gi|70731183|ref|YP_260924.1| sensory box histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] gi|68345482|gb|AAY93088.1| sensory box histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] Length = 775 Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 104/360 (28%), Positives = 192/360 (53%), Gaps = 18/360 (5%) Query: 457 ILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLT 514 I++ D GI ++ G + + N ++ GY ++I+ + F++F L + P + L Sbjct: 274 IIDGVKDYGIFALDTAGRVTTWNVGAERIKGYSEQEIIGRHFSLFYLPEECPQHPDMALR 333 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKL 571 E + +E+ + + +I + S +S DI++ + + L Sbjct: 334 EATAHG--HYMEEAWRCRKDGSRFWASVVITAQYDASGALRGFSKITRDITDRRAAEIAL 391 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 A++ AE S KS+FL+R+SHE+RTPL AI+GF++++ N +I Sbjct: 392 GTAREEAESASRAKSEFLSRMSHELRTPLNAILGFAQLLDMD-----SNAGQRPQVGHIL 446 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR--TS 689 R+G +L ++N++LDI++IE+G++ L+ EP++L + EA++LV A + I + Sbjct: 447 RAGQHLLGLINEVLDIARIEAGRLPLNVEPMALAAVLHEALTLVSPMAADAGITLAPLPE 506 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 A + ++AD + + Q+ LN+LSNAI + +GG++ I ++ + L V DTG G+T Sbjct: 507 LAAD-SGVIADRQRLIQVLLNLLSNAIKYNRAGGRVSIDVAIEAS-RLRLSVLDTGAGIT 564 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 LE+ KPF ++ ++ EGTGLGL L++++++ G + STP G+ + P Sbjct: 565 AERLERLFKPFERLDADPRV--EGTGLGLALSRSLLEMMDGSLGVQSTPGSGSCFTLELP 622 >gi|320158373|ref|YP_004190751.1| two-component system sensor protein [Vibrio vulnificus MO6-24/O] gi|319933685|gb|ADV88548.1| two-component system sensor protein [Vibrio vulnificus MO6-24/O] Length = 1072 Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 112/383 (29%), Positives = 191/383 (49%), Gaps = 18/383 (4%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 Q G+E E ++ R K E+ + +I++ +AI++ I N ++GY Sbjct: 143 QAGLEKE-IELRTADLKASEELSR--TIIDGAPSSVAIVDESLSISLWNSTAQNVYGYSS 199 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL---GSTKEEKL--LSLRII 544 E+ + L + P ++H L+ L+L + +E +TKE + + L + Sbjct: 200 EEATGENILTLLNMSLPDALSHVLSAPLALQNQPDVEGGFFEVETTTKEGHMVPIDLGVS 259 Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 I +L + +L + D++ K + +L+ AK AE+ KS FLA +SHEIRTP+ AII Sbjct: 260 IFELNGACHAALFLRDVTSRKAVEKELNDAKAKAEEAVEVKSMFLANMSHEIRTPMNAII 319 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G S + P+ +Y + I S L+L I+ND+LD SKIE+GK+++ L Sbjct: 320 GMSHLALKTDL----TPKQHDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIETTEFYL 375 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723 D+ + A EK + + PR +L D + QI +N+++N++ FT G Sbjct: 376 DDVFHNVSMVTGQKAFEKGLELIFDLPRETPRCLLGDPLRLGQIIINLVNNSVKFTEK-G 434 Query: 724 QIIISTTHTSNEEVIL----RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 +I +S H N E ++ R+ DTG+GMT+ +++ F Q S + GTGLGL Sbjct: 435 EITVSVHHIRNVEDLVELEFRISDTGIGMTDKQMKSLFTAFTQADGSTTRKYGGTGLGLS 494 Query: 780 LAKAMVDANMGKFYIFSTPAKGT 802 + + +V+ G+ + S KG+ Sbjct: 495 ICRRLVELMGGQIRVESEAGKGS 517 >gi|67459382|ref|YP_247006.1| histidine kinase sensor protein [Rickettsia felis URRWXCal2] gi|67004915|gb|AAY61841.1| Histidine kinase sensor protein [Rickettsia felis URRWXCal2] Length = 497 Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 94/256 (36%), Positives = 151/256 (58%), Gaps = 7/256 (2%) Query: 561 ISEWKQEKNKLSHAKKI-AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 I E + E N+ A+ + EK SS + F A +SHE+RTPL AIIGFSE++ ++R Sbjct: 244 IIEEQLETNRNLKAQIVKVEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSERDAE-K 302 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N YI+ I+ +G +L ++ND+LD+SK + K+ + + L++ +S ++ LV+ A Sbjct: 303 NKNYIKD---INDAGKHLLSMINDILDLSKASADKLKVDSIDLDLNKLISSSLILVKPRA 359 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI- 738 ++ + + + I AD + +KQ+ LN+LSNA+ FT SGG + I+ +++ Sbjct: 360 DQAEVALISRLPKEHVVIKADPKRLKQVFLNLLSNAVKFTNSGGSVTIALEKDELAKLVY 419 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 ++V DTG+G+ ++ K + FGQI + + EGTGLGLPL K +V+ GKF + S Sbjct: 420 IKVIDTGIGIEEKDIPKTLSAFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQSKI 479 Query: 799 AKGTLIEIIFPLYDTS 814 +GT I I F YD S Sbjct: 480 NEGTTITITFT-YDGS 494 >gi|309790815|ref|ZP_07685359.1| PAS fold family protein [Oscillochloris trichoides DG6] gi|308227102|gb|EFO80786.1| PAS fold family protein [Oscillochloris trichoides DG6] Length = 1149 Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 104/384 (27%), Positives = 191/384 (49%), Gaps = 25/384 (6%) Query: 436 EDVDTRINKRKMEIEVMQ-----LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 E + + +N+R E ++ + SILE+ +D ++ E + N ++L G P Sbjct: 367 EALQSELNERMRVEEALRQSSARVTSILESIADAFFAVDMEWKFVYVNDEAARLLGQPTT 426 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 ++ + + T+ + L+ +++ L + + ++ P+ Sbjct: 427 SLIGQSIWDSAADRVGLLYAELYTQAME-SLKPIRDEVYFAP------LDVWLAMRIYPW 479 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 S ++ + D++ + L AK+ AE + +S+FLA +SHEIRTP+ +IG + ++ Sbjct: 480 SDGLAIYIQDVTAAHAAQAALIEAKEAAEHATRARSEFLANMSHEIRTPMNGVIGMTGLL 539 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + PL N R EYA I SG +L I+ND+LD+SKIESG+M L +P + E V Sbjct: 540 LDT---PL-NERQREYAETIRSSGESLLTIINDILDLSKIESGRMELEQQPFEIQECVES 595 Query: 671 AISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 A+ LV A K + + A ++P +L +D+ ++QI +N+L NA+ FT G++ + Sbjct: 596 ALDLVAPTAFAKGLDLAYLIAADVPMMLISDVTRLRQILVNLLGNAVKFT-EHGEVTLQV 654 Query: 730 TH-------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 + +++ VRDTG+G+ +L++ + F Q+ S GTGLGL + K Sbjct: 655 SRYPDFDLEADQVHLVIEVRDTGIGIPPDKLDRLFRAFSQVDASTTRTYGGTGLGLVICK 714 Query: 783 AMVDANMGKFYIFSTPAKGTLIEI 806 + + G + S P +G+ + Sbjct: 715 RLSEMLGGGISVESAPGQGSTFRV 738 >gi|27366536|ref|NP_762063.1| Two-component system sensor protein [Vibrio vulnificus CMCP6] gi|27358102|gb|AAO07053.1| Two-component system sensor protein [Vibrio vulnificus CMCP6] Length = 1072 Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 112/383 (29%), Positives = 191/383 (49%), Gaps = 18/383 (4%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 Q G+E E ++ R K E+ + +I++ +AI++ I N ++GY Sbjct: 143 QAGLEKE-IELRTADLKASEELSR--TIIDGAPSSVAIVDESLSISLWNSTAQNVYGYSS 199 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL---GSTKEEKL--LSLRII 544 E+ + L + P ++H L+ L+L + +E +TKE + + L + Sbjct: 200 EEATGENILTLLNMSLPDALSHVLSAPLALQNQPDVEGGFFEVETTTKEGHMVPIDLGVS 259 Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 I +L + +L + D++ K + +L+ AK AE+ KS FLA +SHEIRTP+ AII Sbjct: 260 IFELNGACHAALFLRDVTSRKAVEKELNDAKAKAEEAVEVKSMFLANMSHEIRTPMNAII 319 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G S + P+ +Y + I S L+L I+ND+LD SKIE+GK+++ L Sbjct: 320 GMSHLALKTDL----TPKQHDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIETTEFYL 375 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723 D+ + A EK + + PR +L D + QI +N+++N++ FT G Sbjct: 376 DDVFHNVSMVTGQKAFEKGLELIFDLPRETPRCLLGDPLRLGQIIINLVNNSVKFTEK-G 434 Query: 724 QIIISTTHTSNEEVIL----RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 +I +S H N E ++ R+ DTG+GMT+ +++ F Q S + GTGLGL Sbjct: 435 EITVSVHHIRNVEDLVELEFRISDTGIGMTDKQMKSLFTAFTQADGSTTRKYGGTGLGLS 494 Query: 780 LAKAMVDANMGKFYIFSTPAKGT 802 + + +V+ G+ + S KG+ Sbjct: 495 ICRRLVELMGGQIRVESEAGKGS 517 >gi|309790686|ref|ZP_07685237.1| histidine kinase [Oscillochloris trichoides DG6] gi|308227280|gb|EFO80957.1| histidine kinase [Oscillochloris trichoides DG6] Length = 830 Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 86/257 (33%), Positives = 150/257 (58%), Gaps = 7/257 (2%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D++E L AK+ AE + KS FL+ +SHE+RTPLTAIIG+S+++ + Sbjct: 432 VQDVTERHYRSEALLRAKEDAEAANRAKSTFLSMMSHELRTPLTAIIGYSQLLG--QLMT 489 Query: 618 LGNPRYIEY-ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 +G+ ++ ++I SG +L ++ND++++S+I+SG+ NL PV++ + V+EA+S+V+ Sbjct: 490 VGDYEGVKSDLHHIYTSGKHLLALINDVIELSRIDSGQRNLDMRPVNIVDLVTEAVSMVR 549 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 R ++ +IP ++ D V+QI LN+L+NA FT G+I +T + E Sbjct: 550 PLVTRNRNTLQIECPLDIPIVITDSLKVRQIILNLLNNAAKFT-ENGEITFTTIYDPQGE 608 Query: 737 V---ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 V I ++ DTG+G+ ++ + PF Q+ + R EGTGLGL L + + + G+ Sbjct: 609 VPTLIFQIADTGIGIDQRQIPRIFDPFVQVDEALNRRYEGTGLGLALCRRLCEVLGGEIS 668 Query: 794 IFSTPAKGTLIEIIFPL 810 + ST G++ + PL Sbjct: 669 VQSTLGVGSIFTVRLPL 685 >gi|157825438|ref|YP_001493158.1| histidine kinase sensor protein [Rickettsia akari str. Hartford] gi|157799396|gb|ABV74650.1| Histidine kinase sensor protein [Rickettsia akari str. Hartford] Length = 497 Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 86/238 (36%), Positives = 141/238 (59%), Gaps = 6/238 (2%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 E+ SS + F A +SHE+RTPL AIIGFSE++ ++R + Y I+ +G + Sbjct: 262 VEQTSSSNTKFFANISHELRTPLNAIIGFSEILMSER----DAEKSKNYIKDINDAGKHL 317 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ND+LD+SK + K+ + + L++ +S +++LV+ A++ + + + I Sbjct: 318 LSMINDILDLSKASADKLKVDSIDLDLNKLISSSLALVKPRADQAEVALMSRLPKEHVVI 377 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKA 756 AD + +KQ+ LN+LSNA+ FT SGG + I+ +++ ++V DTG+G+ ++ K Sbjct: 378 KADPKRLKQVFLNLLSNAVKFTNSGGSVAITLEKDELAKLVYIKVIDTGIGIEEKDIPKT 437 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + FGQI + + EGTGLGLPL K +V+ GKF + S +GT I I F YD S Sbjct: 438 LSAFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQSKINEGTTITITFT-YDGS 494 >gi|117925683|ref|YP_866300.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609439|gb|ABK44894.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1788 Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 106/371 (28%), Positives = 189/371 (50%), Gaps = 20/371 (5%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 ++++E E+ +L +E T + I + EG + N G+ +++L + + Sbjct: 794 QRKRVEEELSKLYRAVEQTPVSVVITDLEGRVEYVNPTFCHNSGFAEDEVLGRTNGLIPS 853 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTM 558 +T L + ++ + E L TK L+ R+ I + + + Y Sbjct: 854 DHTSGAEYQALWQQITAGGEWSGE--FLNRTKSGGLVWERVSISAVRSADGQITHYLGIK 911 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DIS+ K+++ +L+HAK+ A+ + KS FLA +SHEIRTP+ AI+G + + Sbjct: 912 EDISQMKEDQERLAHAKESADLANRAKSSFLANMSHEIRTPINAIVGMCHLAQRMTV--- 968 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE--PVSLDEAVSEAISLVQ 676 P+ +Y +I + + +L I+ND+LD+SKIE+GK LHFE P LDE +S + L Sbjct: 969 -EPKLRDYLGHIQVAADTLLGIINDILDVSKIEAGK--LHFEDIPFKLDELISRVMRLQG 1025 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST----TH 731 L A +K + + +P+ ++ D + QI N+++NA+ FT G++++S Sbjct: 1026 LKAQDKNVELVIDLEPQVPQTVVGDPLRISQILTNLVNNAVKFTEQ-GEVVLSVKLQGVF 1084 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + VRD+G+GM + +L++ PF Q +S R GTGLGL + + +V G Sbjct: 1085 DGRVTLYFEVRDSGIGMEDAQLQRLFTPFQQGDDSMTRRYGGTGLGLSICQNLVKMMGGH 1144 Query: 792 FYIFSTPAKGT 802 + S ++G+ Sbjct: 1145 LQVESRLSEGS 1155 >gi|186684847|ref|YP_001868043.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186467299|gb|ACC83100.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 738 Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 113/378 (29%), Positives = 197/378 (52%), Gaps = 27/378 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT--VFLEQNTPSVMNHYL 513 +I E +S GI +I+ + I+ TN + ++ GY E++ K FT + +++ + + Sbjct: 209 AIFERSSIGIGLIDMKAQIVDTNPVLCEILGYSREELYAKRFTDYISIQKGDLKLYKQLV 268 Query: 514 TEI-------------LSLDLRQTLEKITLGST-----KEEKLLSLRIIIKKLPFSSC-- 553 +EI +S Q ++K + K+ L+ I + +P S+ Sbjct: 269 SEIGKNSGKTSRFGFQISKLEEQAVDKHRIEMERRCLHKDGSLVWTHISVSVIPDSNGEP 328 Query: 554 -YSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + L M DI+E K+ + KL +++ AE S K++FLA +SHE+RTPL AI+G S++++ Sbjct: 329 EFFLAMIEDITERKETELKLRASQEAAEAASRAKTEFLATMSHELRTPLNAIMGLSQLLQ 388 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + G L N + EY + I SG +L ++ND+LD+SK+E GK L P+ + + + A Sbjct: 389 QEIVGSL-NEKQNEYVSCIYSSGEHLLALINDILDLSKVEEGKEELLLSPLPVSDLCNYA 447 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 I V+ A+EK + + +AD R +KQ+ LN+L+NAI FTP G ++ Sbjct: 448 IWTVRDRASEKGLKLTYKIDLQEDICIADERRIKQMLLNLLTNAIKFTPVGNVSLV--VK 505 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + V DTG+G+ + + +PF Q+ + + EGTGLGL L + + + G Sbjct: 506 KVPQGITFTVSDTGIGIDPNQFQFLFEPFKQLDSRLNRQYEGTGLGLALTRKLARLHGGD 565 Query: 792 FYIFSTPAKGTLIEIIFP 809 + ST +G+ + P Sbjct: 566 VTVTSTLGEGSQFTLFLP 583 >gi|170738563|ref|YP_001767218.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168192837|gb|ACA14784.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 708 Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 92/262 (35%), Positives = 135/262 (51%), Gaps = 9/262 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +I+E + L A+ AE S KS FLA VSHE RTPL I+G ++++ PL Sbjct: 180 REITERVEAVRSLDEARSRAEAASVAKSRFLATVSHEFRTPLNGILGMADLVLET---PL 236 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 +P Y I SG +L +++ +LD SKIE+G+++L EP V + L+ Sbjct: 237 -SPEQETYIRAIKTSGEALLTLIDGILDFSKIEAGRLDLACEPFDPAALVESVVELLAPR 295 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A +K + I A+++P R+L D V+QI LN+ NA+ FT +GG I T E++ Sbjct: 296 AQDKGLEIAADLADDLPPRVLGDGDRVRQILLNLAGNAVKFTEAGGVGI--TAERVGEDL 353 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 +L V DTG G+ L + F Q S R EGTGLGL + + +VD G+ S Sbjct: 354 VLAVHDTGPGIPEERLPLLFEEFEQGDGSASRRHEGTGLGLAITRRLVDRMGGRIETTSR 413 Query: 798 PAKGTLIEIIFPL--YDTSHPH 817 P G+ ++ PL D P Sbjct: 414 PGAGSCFRVVLPLRALDGERPR 435 >gi|331019216|gb|EGH99272.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 775 Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 129/440 (29%), Positives = 223/440 (50%), Gaps = 46/440 (10%) Query: 398 ARLHTIQWNREN-SLAMTFIPFEKANQFPEN--MPQNGIEPEDVDTRINKRKMEI----E 450 AR+H +Q N + +L +P Q PE + Q G + + +R+ + E Sbjct: 215 ARVHQVQRNAQRLALGHPLLP-----QPPEKDEIGQLGTRLVEAGQLLAERERALRDNEE 269 Query: 451 VMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSV 508 ++L I+E D GI ++R G + + N ++ GY ++I+ + F+VF L Q P Sbjct: 270 RLRL--IIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQH 327 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEW 564 + L E +++ R T E + K+ ++I S+ +S DIS+ Sbjct: 328 PDMALHEA-TVNGRYTEE--SWRRRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDR 384 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQRFGPLG 619 + + L A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ +QR Sbjct: 385 RVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQR----- 439 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +I R+G +L ++N++LDI++IE+G ++L EPVSL + E + LV A Sbjct: 440 -----PQVGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMA 494 Query: 680 NEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 + I ++ ++P ++AD + + Q+ LN+LSNAI + GQ+ I S E Sbjct: 495 ADGNIELKE--LPHLPDELGVIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDR-SAEH 551 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V + V DTG G+ L + KPF ++ + + EGTGLGL L+K+M++ G + + Sbjct: 552 VTVSVVDTGYGIAPERLGQLFKPFERLDANPSV--EGTGLGLALSKSMLEMMKGTLSVQT 609 Query: 797 TPAKGTLIEIIFPLYDTSHP 816 T +G + P P Sbjct: 610 TQNEGCRFTLALPFVAVHAP 629 >gi|28869332|ref|NP_791951.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28852573|gb|AAO55646.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] Length = 746 Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 129/440 (29%), Positives = 223/440 (50%), Gaps = 46/440 (10%) Query: 398 ARLHTIQWNREN-SLAMTFIPFEKANQFPEN--MPQNGIEPEDVDTRINKRKMEI----E 450 AR+H +Q N + +L +P Q PE + Q G + + +R+ + E Sbjct: 186 ARVHQVQRNAQRLALGHPLLP-----QPPEKDEIGQLGTRLVEAGQLLAERERALRDNEE 240 Query: 451 VMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSV 508 ++L I+E D GI ++R G + + N ++ GY ++I+ + F+VF L Q P Sbjct: 241 RLRL--IIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQH 298 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEW 564 + L E +++ R T E + K+ ++I S+ +S DIS+ Sbjct: 299 PDMALHEA-TVNGRYTEE--SWRRRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDR 355 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQRFGPLG 619 + + L A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ +QR Sbjct: 356 RVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQR----- 410 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +I R+G +L ++N++LDI++IE+G ++L EPVSL + E + LV A Sbjct: 411 -----PQVGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMA 465 Query: 680 NEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 + I ++ ++P ++AD + + Q+ LN+LSNAI + GQ+ I S E Sbjct: 466 ADGNIELKE--LPHLPDELGVIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDR-SAEH 522 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V + V DTG G+ L + KPF ++ + + EGTGLGL L+K+M++ G + + Sbjct: 523 VTVSVVDTGYGIAPERLGQLFKPFERLDANPSV--EGTGLGLALSKSMLEMMKGTLSVQT 580 Query: 797 TPAKGTLIEIIFPLYDTSHP 816 T +G + P P Sbjct: 581 TQNEGCRFTLALPFVAVHAP 600 >gi|59711903|ref|YP_204679.1| hybrid sensory histidine kinase [Vibrio fischeri ES114] gi|59480004|gb|AAW85791.1| hybrid sensory histidine kinase [Vibrio fischeri ES114] Length = 692 Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 88/262 (33%), Positives = 146/262 (55%), Gaps = 6/262 (2%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y T DIS K+ + AK AEK + KS FLA +SHEIRTPL +I+G +V + Sbjct: 297 YRGTAKDISARKKRIRDIQTAKTEAEKANKAKSQFLAMMSHEIRTPLNSILGLVDVFHS- 355 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 L + +++ N ++ S L+L I++D+LDIS+IE+G L+ +P+ L +++ +I+ Sbjct: 356 ---SLLSEEQLDWLNQMESSSQLLLTIISDVLDISRIEAGTFVLNEQPIDLLRSLNTSIN 412 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + A +K I + + + N+P+ + AD + Q+ N++ NAI FT + G + + Sbjct: 413 FLDTRAKDKGITLTVTASQNVPKYVFADATRLSQVIFNLVGNAIKFT-NHGHVAVKIEKL 471 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 N + + V DTG+G+ + LE+ KPF Q +S + GTGLGL + K +V+ G Sbjct: 472 PNNSISISVSDTGIGIASTTLEQLFKPFVQADSSITRKYGGTGLGLAIIKRLVELMQGTI 531 Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814 + S G+ +I PL + S Sbjct: 532 TVESRLNIGSTFKITLPLKEIS 553 >gi|21229201|ref|NP_635123.1| two component system histidine kinase [Methanosarcina mazei Go1] gi|20907770|gb|AAM32795.1| Two component system histidine kinase [Methanosarcina mazei Go1] Length = 707 Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 88/274 (32%), Positives = 152/274 (55%), Gaps = 2/274 (0%) Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 LL L+ I + Y T +I+E K+ + +L AK+ AE + KS+FLA +SHE+R Sbjct: 435 LLRLKPICGETGNIIAYLETGVEITERKKYEIELFRAKQDAEVANYAKSEFLANMSHELR 494 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TPL +IIGFS+++ ++ +G L N R ++ I SG +L+++N++LD+SK+E+G L Sbjct: 495 TPLNSIIGFSDLLHDKVYGEL-NARQLKAVGNISGSGKHLLNLINEILDLSKVEAGGFEL 553 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717 H+ L + +E ++ +A K I + ++P I D + Q+ N+++NA+ Sbjct: 554 HYSTFWLADVFAEVRDMLFPFAASKGIKLELEIEKDLPGIYGDRERITQVLSNLMTNAVK 613 Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 F+ + + + +N + + V D G+G+ + +K KPF QI +S + +GTGLG Sbjct: 614 FSNENSCVRVKASQNNN-FIEVSVSDEGIGIAAEDHDKLFKPFSQIDSSSSRKYQGTGLG 672 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 L L K +V + G + S KG+ PL+ Sbjct: 673 LALVKEIVQLHGGAVWFKSEVGKGSTFGFSIPLH 706 >gi|295690559|ref|YP_003594252.1| histidine kinase [Caulobacter segnis ATCC 21756] gi|295432462|gb|ADG11634.1| histidine kinase [Caulobacter segnis ATCC 21756] Length = 264 Score = 146 bits (368), Expect = 2e-32, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 129/224 (57%), Gaps = 1/224 (0%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K FL VSHE+RTPL A+IGFSE++ ++ +GPLG P+Y EYA + SG +L +VN + Sbjct: 39 KRSFLRMVSHELRTPLNAVIGFSEILSHELYGPLGAPQYREYAQIVHESGVKLLKLVNQI 98 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 ++I+++E ++ P SLDEA+ + I ++ + ++I +P ++AD R + Sbjct: 99 VEIARLEGHVTDIKMTPESLDEALEDVIEGLRPEIARREVIIHIIGQGALPLVIADSRGL 158 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 + + N+L NA+ +P+GG + ++ EV + +RD G G+ + EL + ++PF Q Sbjct: 159 RTMLSNLLQNAVTHSPAGGVVHVAAGRIG-AEVEVTIRDQGPGVDSAELPRLLQPFEQGG 217 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + EG GLGLP+ + A G+ + S+ G L +I Sbjct: 218 SPLTRANEGVGLGLPIVDLLSRAMGGRLKLSSSLGAGFLARLIL 261 >gi|302337012|ref|YP_003802218.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301634197|gb|ADK79624.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 944 Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 110/378 (29%), Positives = 193/378 (51%), Gaps = 22/378 (5%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK---PFTVFLEQNTPSVMNHY 512 S++++ G+ NR+GII N A +L G + ++ K P +F +++ H+ Sbjct: 292 SLIKSMPSGLITRNRDGIITHFNLAAEQLLGIKGDTVIGKRDLPDALFFFDEKGNIIEHF 351 Query: 513 -LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS------CYSLTMHDISEWK 565 L L+ + L + + + + + ++ + + P +TM D+S+ Sbjct: 352 DAPTFLVLESGKPLRNVLVRAIRPDGS-TVWLSVNGEPLFGKDEEPVAAVITMKDVSDHL 410 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + ++L A+++A S KS FLA +SHEIRTPL+ I+G ++++ + GPL + E Sbjct: 411 RLVDELEQARQMAVTASDSKSRFLANISHEIRTPLSGIMGMTDLLLS---GPLTEDQR-E 466 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + + L+LDI+N +L+ISKIESGK++L EP L A+++A + + EK I+ Sbjct: 467 NLFLMKEAEELLLDIINKVLEISKIESGKLSLELEPFRLRGAINKAALPIFMGCKEKGIV 526 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILR 740 + + +IP R++ D + Q+ N LSNA+ FT SG + + NE E+ Sbjct: 527 LDIDVSPSIPDRLIGDGSRLTQVLTNFLSNALKFTESGTITLTVVETSRNENGKIELFFS 586 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+DTG+G+ + F QI + R +GTGLGL ++K +V+ G + S + Sbjct: 587 VKDTGIGIPSDAQTTIFDDFRQIDSGPAKRHQGTGLGLAISKKLVELMDGSIGVESEGGQ 646 Query: 801 GT--LIEIIFPLYDTSHP 816 G+ +F L D P Sbjct: 647 GSRFFFSAMFTLLDEGEP 664 >gi|88608550|ref|YP_505906.1| sensor histidine kinase [Neorickettsia sennetsu str. Miyayama] gi|88600719|gb|ABD46187.1| sensor histidine kinase [Neorickettsia sennetsu str. Miyayama] Length = 447 Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 97/240 (40%), Positives = 134/240 (55%), Gaps = 6/240 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 KL AK+ E+ SS KS FLA VSHE++TPL AIIGFS++I R + + EYAN Sbjct: 207 KLKKAKESIEEISSQKSQFLANVSHELKTPLNAIIGFSDLI---RTAEVLGTEHREYAND 263 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SGN +L+++ND+LD SK E NL +P D + K I I S Sbjct: 264 IYYSGNHLLNLINDILDFSKSELN--NLEIKPTLFDLVRLTETCIRMTTTKRKEIKIVKS 321 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 F +N I +D + VKQ+ LNILSN+I FT G I IS +E + + + D GVG+ Sbjct: 322 FFSNKILIKSDHKRVKQVILNILSNSIKFTNEDGLIRISIIRLPSE-IEIEISDNGVGIP 380 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ KA+ FGQ + +G G+GLPL+K +V+ G F I S GT+++I P Sbjct: 381 EKDIAKALSVFGQSNTELSRKYDGAGIGLPLSKKLVELMGGVFEIESKEGSGTVVKIRLP 440 >gi|288941879|ref|YP_003444119.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897251|gb|ADC63087.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1253 Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 87/256 (33%), Positives = 148/256 (57%), Gaps = 10/256 (3%) Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + + L+ ++ + ++ A++ AE+ S KS FLA +SHEIRTP+ A+IG S+++ Sbjct: 495 TIFKLSSGEVVAVYNDLTEIKRAQEAAERASRAKSQFLANMSHEIRTPMNAVIGLSDLLL 554 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 PL + + +Y I S L+L I+ND+LD SKIE+GK++L +P SLD+ + + Sbjct: 555 ET---PL-DAKQRDYLGKIRESSRLLLGIINDILDYSKIEAGKLDLSLQPFSLDDLLDQM 610 Query: 672 ISLVQLYANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 +L A+ + I LI +++ R+ D ++Q+ +N+LSNA+ FT G Q+++S Sbjct: 611 RTLFGNEADARDIELIFDLAVSSLHRVEGDALRLRQVLINLLSNAVKFTEQG-QVVLSIR 669 Query: 731 H----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 T++ + VRDTG+G+ + + KPF Q +S R GTGLGL +++ +V+ Sbjct: 670 QLDAGTASARLRFEVRDTGIGIAPEQQTRLFKPFSQADSSTTRRYGGTGLGLVISQKLVE 729 Query: 787 ANMGKFYIFSTPAKGT 802 G + STP G+ Sbjct: 730 KMGGTLVLESTPGAGS 745 >gi|67924012|ref|ZP_00517464.1| PAS [Crocosphaera watsonii WH 8501] gi|67854152|gb|EAM49459.1| PAS [Crocosphaera watsonii WH 8501] Length = 1068 Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 114/366 (31%), Positives = 191/366 (52%), Gaps = 23/366 (6%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM--N 510 + IL+ ++ I I+ I N A + FGY ++L +PF + + PS N Sbjct: 465 RFAGILDNANEAIISIDENQKITLFNHAAEQTFGYTSNEVLGQPFNLLI----PSRFTNN 520 Query: 511 HYLTEILSLDLRQTLEKI-----TLGSTKEEKLLSLRIIIKKLP--FSSCYSLTMHDISE 563 HY + ++T ++ G K+ + I K+ + ++ + DI+E Sbjct: 521 HYQYINSFKNTQETARQMGGRRPVFGQRKDGTEFLAEVSISKIKPRGKTIFTAIIRDITE 580 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 KQ + L AK+ A+ + KS+FLA +SHE+RTPL AI+GF++V+ QR L NP + Sbjct: 581 RKQAEEALKKAKEKADAANCAKSEFLASMSHELRTPLNAILGFTQVM--QRDQEL-NPDH 637 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + I RSG +L+++ND+L+++KIE+G+ + L + S++ L A EK Sbjct: 638 KQNLEIIGRSGEHLLELINDILEMTKIEAGRTTFNRTQFDLYRLLDNLESMLHLKAEEKN 697 Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVIL 739 + + N+P+ I D ++Q+ +N+L NAI FT GG I+ T+ N+E+IL Sbjct: 698 LQLLFEKIENLPQYIETDESKLRQVLINLLGNAIKFTQEGGVILRIKTNEMIGDNQEIIL 757 Query: 740 --RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V DTG G+ E+++ + FGQ + EGTGLGLP+++ V G+ + S Sbjct: 758 TFEVEDTGPGIAPEEVDQLFEAFGQTETGRN-SNEGTGLGLPISQKFVQLMGGEISVSSV 816 Query: 798 PAKGTL 803 +G+L Sbjct: 817 LGRGSL 822 >gi|183220306|ref|YP_001838302.1| two-component sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910423|ref|YP_001961978.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775099|gb|ABZ93400.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778728|gb|ABZ97026.1| Putative two-component sensor protein with CheY-like receiver domain [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 655 Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 108/354 (30%), Positives = 181/354 (51%), Gaps = 15/354 (4%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 E G+ +++ +G L N+ + + GY +++ +P F + S+ + Y L Sbjct: 141 FENAGIGVCLLDLDGKFLRVNKKIQSMLGYSEVELIGRPSKEFAYKEDQSIFHQYRESAL 200 Query: 518 -SLDLRQTLEKITLGSTKEEKLLSLRI---IIKKLPFSSCYSLT-MHDISEWKQEKNKLS 572 D+ EK + T + +L + I ++K S Y + +DI++ K + L Sbjct: 201 KGKDVDVVYEKRYVSKTNQ--ILWIEISNSLVKDRNGSPLYFVVHFNDITDRKNAEIHLI 258 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 AKK AE+ + KSDF+A +SHEIRTPL +IGF+E++ + EY Sbjct: 259 QAKKEAERANQAKSDFVANMSHEIRTPLNGVIGFNELLMTTNL----DSDQKEYVKNAIS 314 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 S + +L I+ND+LDISKIE+GK+ L+ +L V +++ ++Q A EK I + Sbjct: 315 SAHGLLGIINDILDISKIEAGKLVLNETISNLKHIVKDSLGVLQWRAKEKNIQLDFEVNP 374 Query: 693 NIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGM 748 +P I+ D ++QI +N+L NA+ FT G I+ I + NE++ L ++DTG+G+ Sbjct: 375 KLPEWIVVDATRLRQILINLLGNAVKFTEKGSVILKIDSEIAENEKIKLNFSIKDTGIGI 434 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + F Q ++ R GTGLGL + K+++D G+ S KGT Sbjct: 435 PESHKPNLFQSFWQGESNSTRRFGGTGLGLRITKSLLDLMGGQIDFSSEEGKGT 488 >gi|269839224|ref|YP_003323916.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC BAA-798] gi|269790954|gb|ACZ43094.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC BAA-798] Length = 1363 Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 96/251 (38%), Positives = 143/251 (56%), Gaps = 14/251 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+E ++ +L A+ A + S KS+F+A +SHEIRTPL AIIG +E++++ PL Sbjct: 818 RDITESRRVAEELRRARDQAIEASRLKSEFVANMSHEIRTPLNAIIGMTELLQDT---PL 874 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLV 675 + R E+ I S +L I+ND+LD SKIE+GKM L F+ VSL E SE ++ Sbjct: 875 -SERQREFVQTIQTSSQSLLSIINDILDFSKIEAGKMVLEEVDFDLVSLVEGTSEMLAGA 933 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A K I + T IPR ++ D ++Q+ LN+LSNA+ FT G ++ H + Sbjct: 934 ---ARGKGISLMTFVDPTIPRTLIGDPARLRQVLLNLLSNAVKFTEQGEVLLRVLPHRAA 990 Query: 735 E---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + E++ VRDTG+G+ + L K +PF Q S R GTGLGL ++K +V+ G Sbjct: 991 DSEVELLFEVRDTGIGIDSAHLGKLFQPFTQADASTTRRYGGTGLGLTISKTLVELMGGT 1050 Query: 792 FYIFSTPAKGT 802 + S P G+ Sbjct: 1051 IWAESQPGVGS 1061 >gi|307824658|ref|ZP_07654882.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307734312|gb|EFO05165.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 1278 Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 102/363 (28%), Positives = 188/363 (51%), Gaps = 22/363 (6%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 I+E +D + I+ G I S N A KLFGY +I+ + + + + S Y+ Sbjct: 775 IIENVADAVITIDSVGTISSFNPAAEKLFGYSAAEIINRNVNLLMPEPYRSKHGRYI--- 831 Query: 517 LSLDLRQTLEKITL--------GSTKEEKLLSLRIIIKKLPF--SSCYSLTMHDISEWKQ 566 DL + + G K+ + SL + + + S + + DISE KQ Sbjct: 832 ---DLHNAGQPSGIIGKQLELPGQHKDGTIFSLELAVTLMEIDDSKHFVGILRDISERKQ 888 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + ++ A+ AE ++ KS+FL+ +SHE+RTP+ AI+GF ++++ + N +Y Sbjct: 889 YEQEIIAARDEAESANNAKSEFLSNMSHELRTPMNAILGFGQLLEIEAG---LNEDQADY 945 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + I ++G+ +L+++N++LD+++IESG +NL EP+S E + E ++L++ A + I I Sbjct: 946 VDEILKAGHHLLELINEVLDLARIESGNINLSLEPLSCAELIGECLTLIKPIAQVRGITI 1005 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 + + I AD +KQ+ +N+LSNAI + G++++ + V L V DTG Sbjct: 1006 NDAAIGDYV-IRADRTRLKQVLINLLSNAIKYNRPQGEVLVQVA-VQDGFVRLEVSDTGY 1063 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ ++ +PF ++ + EGTG+GL +++ ++ G + S +G I Sbjct: 1064 GIPATRRQELFQPFSRL-GVEDADIEGTGIGLTISRRLMKMMGGAIGMDSEEGRGCTFWI 1122 Query: 807 IFP 809 P Sbjct: 1123 ELP 1125 >gi|110636005|ref|YP_676213.1| multi-sensor hybrid histidine kinase [Mesorhizobium sp. BNC1] gi|110286989|gb|ABG65048.1| multi-sensor hybrid histidine kinase [Chelativorans sp. BNC1] Length = 744 Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 116/382 (30%), Positives = 183/382 (47%), Gaps = 20/382 (5%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIILSTNRAVSKLFGYPVEDIL 493 E++ R+++ M+ + +LE D +INR EG IL NR +L +D+ Sbjct: 94 EELADRVSQ--MQEAEQRFYGLLETLGD--LVINRDGEGRILYANRIFGELMECEPQDLF 149 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 K TP I + R + + + + + S I ++ SS Sbjct: 150 GKTLHQLGVDITPPSAG-----IFPEEERLSSTDVAIHTRNGLRWFSWTEISRREGESSS 204 Query: 554 YS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 S DI+ K+ + L +A++ AE+ S KS FLA VSHEIRTP+ IIG + ++ Sbjct: 205 VSHWAIARDITARKRAETALVNARERAEQASIAKSRFLATVSHEIRTPMNGIIGMATLLS 264 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + R + Y I S + +L ++ DLLD SKIE+G++ L + ++ E + Sbjct: 265 DTRL----SSEQRTYVAAISTSASALLALIEDLLDYSKIEAGRLELEPQRMAARELIESV 320 Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 I L+ + A K+I + A +P ILAD ++QI LN+L NAI FT GG ++ TT Sbjct: 321 IELMAVRAFTKKIGLGCHIAPTVPDTILADPGRLRQILLNLLGNAIKFTDEGGVLMTVTT 380 Query: 731 --HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 H ++ RV DTG G+ L + + F Q S + G GLGL + + ++DA Sbjct: 381 TIHDGAPKLAFRVDDTGPGIEKDSLSRIFQEFEQADTSSTRKHGGAGLGLAITRRLIDAM 440 Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810 G + S P +G + PL Sbjct: 441 EGTVTVDSAPGEGATFTVYIPL 462 >gi|260574258|ref|ZP_05842263.1| histidine kinase [Rhodobacter sp. SW2] gi|259023724|gb|EEW27015.1| histidine kinase [Rhodobacter sp. SW2] Length = 854 Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 104/376 (27%), Positives = 186/376 (49%), Gaps = 42/376 (11%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF---------GYPVEDILRKPFTVF 500 E M++ + +EA DG + +RE +++ N+ L+ G E ILR Sbjct: 200 EQMRIWAAIEAIPDGFVLFDREDRLMTCNQRYRDLYPESAEAMVPGASYESILRYGLEQG 259 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS----LRIIIKKLPFSSCYSL 556 + V +L E L+ + L S + E+ ++ LR+I ++ P L Sbjct: 260 AYADALGVEEDWLKERLA--------RRRLKSDQFEQQMADGRWLRVIEQETPDGGHVGL 311 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI------ 610 + D++ ++++ L A+ AE + KS FLA +SHEIRTP+ ++G +E++ Sbjct: 312 RV-DVTAAREQQTLLETARMAAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLCDTNLT 370 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + QR +A+ I SG +L I+ND+LD SKIE+ ++ LH EP L+ + E Sbjct: 371 EEQRL----------FADTIRSSGEALLVIINDILDYSKIEAERLTLHPEPFDLERTIHE 420 Query: 671 AISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QII 726 L+Q A K + + F +P R + D ++Q+ N++ NA+ FT +G +++ Sbjct: 421 VTMLLQPRARAKGLDLMIDFDMFLPTRYIGDAGRLRQVLTNLMGNAVKFTETGHVLVRVV 480 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 ++++ + V DTG+G+ L+ F Q+ + + EGTGLGL + + +V+ Sbjct: 481 GIEAEPGSQQLHITVEDTGIGIAPEHLDHIFGEFNQVESETNRKFEGTGLGLAITQRLVE 540 Query: 787 ANMGKFYIFSTPAKGT 802 G ++ S P KG+ Sbjct: 541 RMGGAVWVDSEPGKGS 556 >gi|75910897|ref|YP_325193.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704622|gb|ABA24298.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1274 Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/264 (31%), Positives = 152/264 (57%), Gaps = 14/264 (5%) Query: 559 HDISEWKQEKNKLSHAKK---IAEKESSH----KSDFLARVSHEIRTPLTAIIGFSEVIK 611 +++E +Q + KL+ + + I+ +E + K +FLA +SHE+RTPL AI+G +E ++ Sbjct: 854 QELAERQQAELKLTQSNQQLAISNQELARATRLKDEFLANMSHELRTPLNAILGMTEGLQ 913 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 FG + + ++ + I+RS + +LD++ND+LD++KIE+G++ L +S+ + Sbjct: 914 EGVFGMINDKQF-KALETIERSSSHLLDLINDILDVAKIEAGQIKLDCTAISVAALCQSS 972 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + ++ A +KRI + N+P + D R ++Q+ +N+L+NA+ FTP G+I + T Sbjct: 973 LVFIKQQALQKRIQVEIKIPLNLPDLFVDERRIRQVLINLLNNAVKFTPETGRISLEVTQ 1032 Query: 732 TSNEEVILR------VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 S + ++ V DTG+G+ + K +PF QI ++ + EGTGLGL L K +V Sbjct: 1033 VSPDISTVQNFLQIAVIDTGIGIMQENINKLFQPFIQIDSALNRQYEGTGLGLALVKKIV 1092 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + + G+ + S G+ I P Sbjct: 1093 ELHGGRVGLTSELGVGSCFTIELP 1116 >gi|307150289|ref|YP_003885673.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306980517|gb|ADN12398.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1093 Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 110/362 (30%), Positives = 181/362 (50%), Gaps = 24/362 (6%) Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 G ++ N SK GY E++L + P+ +N SL Q+ + I + Sbjct: 599 GKLIEVNEQASKKLGYSREELLSMSVKDII---NPASVNPEA----SLKKLQSAKHIVVE 651 Query: 532 S---TKEEKLLSLRI-----IIKKLPFSSCYSLTMHDISEWKQEKNKL----SHAKKIAE 579 S TKE + + + + + LP + + + +QE+ +L A++ AE Sbjct: 652 SVHITKEGQEIPVEVSATLFTLNGLPTVQAICRDITERKQIEQEREQLLIREQAAREAAE 711 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 + K +FLA +SHE+R+PL I+G+++++KN L P + I+R+ L + Sbjct: 712 SANRIKDEFLAVLSHELRSPLNPILGWAQMLKNYE---LDQPTTQKALCIIERNARLQAE 768 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699 ++ DLLD+S+I GK+NL+ VSL + A+ V+L A K I +RT + R+L Sbjct: 769 LIEDLLDVSRILRGKLNLNTTSVSLVVVIEAALETVRLAAQAKSIELRTQLETPVGRVLG 828 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759 D ++Q+ N+LSNA+ FTPSGGQ+ I V +RV+DTG G+T L Sbjct: 829 DAARLQQVVWNLLSNAVKFTPSGGQVEIELEQIHG-GVEIRVKDTGKGITPEFLPYIFDY 887 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA-KGTLIEIIFPLYDTSHPHD 818 F Q +S + G GLGL +A+ +V+ + GK + S +G + PL P+D Sbjct: 888 FRQADSSTTRKFGGLGLGLAIARHLVELHGGKIWAESLGENQGATFIVNLPLLPQEFPND 947 Query: 819 CI 820 + Sbjct: 948 TL 949 >gi|157964296|ref|YP_001499120.1| histidine kinase sensor protein [Rickettsia massiliae MTU5] gi|157844072|gb|ABV84573.1| Histidine kinase sensor protein [Rickettsia massiliae MTU5] Length = 498 Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 92/256 (35%), Positives = 149/256 (58%), Gaps = 7/256 (2%) Query: 561 ISEWKQEKNKLSHAKKI-AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 I E + E N+ A+ + EK SS + F A +SHE+RTPL AIIGFSE++ ++R Sbjct: 245 IIEEQLETNRNLKARIVKVEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSER----D 300 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + Y I+ +G +L ++ND+LD+SK + K+ + + L++ +S ++ LV+ A Sbjct: 301 AEKSKNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSMDLDLNKLISSSLILVKPRA 360 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI- 738 ++ + + + I AD + +KQ+ LN+LSNA+ FT SGG + I+ +++ Sbjct: 361 DQAEVALISRLPKEHVVIKADPKRLKQVFLNLLSNAVKFTNSGGSVTIALEKDELAKLVY 420 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 ++V DTG+G+ ++ K + FGQI + + EGTGLGLPL K +V+ GKF + S Sbjct: 421 IKVIDTGIGIEEKDIPKTLSVFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQSKI 480 Query: 799 AKGTLIEIIFPLYDTS 814 +GT I I F YD S Sbjct: 481 NEGTTITITFT-YDGS 495 >gi|91788257|ref|YP_549209.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666] gi|91697482|gb|ABE44311.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666] Length = 618 Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 92/269 (34%), Positives = 157/269 (58%), Gaps = 13/269 (4%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y L D S KQ + L A +AEK + KSDFL+ +SHE+RTPL+AI+GF+++I++ Sbjct: 202 YLLIGTDNSVRKQVEVALKEAMAVAEKANLAKSDFLSSMSHELRTPLSAILGFAQLIESG 261 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 P P + I ++G +L+++N++LD++ IESG+++L EPVSL E + E + Sbjct: 262 T--PQPTPSQKRSVDQILQAGWYLLELINEILDLALIESGRLSLSLEPVSLAEVMLECET 319 Query: 674 LVQLYANEKRILIRTSFAN-NIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 LV+ A ++ IR +F ++P + AD +KQ+ +N+LSNAI + SGG +++ + Sbjct: 320 LVESQAAKRG--IRVTFPQFSLPCFVKADRTRLKQVLINLLSNAIKYNTSGGTVVLKCVN 377 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPF---GQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 S + + + V DTG G+ ++ + +PF GQ N++Q GTG+GL + K +++ Sbjct: 378 VSPQRIRICVEDTGEGLNPAKIAQLFQPFNRLGQEANTEQ----GTGIGLVMTKRLIELM 433 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 G + S +G++ I L + H Sbjct: 434 GGAIGVESIVGQGSVFWIEMDLTEERELH 462 >gi|197106174|ref|YP_002131551.1| sensor histidine kinase [Phenylobacterium zucineum HLK1] gi|196479594|gb|ACG79122.1| sensor histidine kinase [Phenylobacterium zucineum HLK1] Length = 257 Score = 145 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 128/232 (55%), Gaps = 1/232 (0%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A + K FL VSHE+RTPL +I+GFSE++ ++ +GPLG P+Y EYA I SG + Sbjct: 25 AAATDAQKRSFLRMVSHELRTPLNSILGFSEILTSELYGPLGAPQYKEYAGIIRESGQKL 84 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L +VN +L+I+++E+ ++ P L+ A+ + ++ + + + + + ++P + Sbjct: 85 LKLVNQVLEIARLENQSVDFDPRPEPLEAALDDVLAGLADEIEARHVAVEVTGRGDLPVV 144 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 AD R ++ + ++L NA+ F+P GG + + + I+ +RD G G+ EL + M Sbjct: 145 TADPRGLRTVLHHLLHNAVAFSPEGGTVWVGAQALAGGVEIV-IRDEGEGIDPAELPRLM 203 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 PF Q N+ EG GLGLP+A A G+ + S P KG + P Sbjct: 204 TPFEQGENALTRHTEGAGLGLPIADLTCKAMGGRLTLASKPGKGLTAGLRLP 255 >gi|309778817|ref|ZP_07673590.1| sensory box histidine kinase/response regulator [Ralstonia sp. 5_7_47FAA] gi|308922525|gb|EFP68149.1| sensory box histidine kinase/response regulator [Ralstonia sp. 5_7_47FAA] Length = 683 Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 96/260 (36%), Positives = 145/260 (55%), Gaps = 13/260 (5%) Query: 560 DISEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 DISE +Q + + S A++ AE+ S K DFLA VSHE+RTPL A++G+++++ Sbjct: 272 DISERRQAEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLNM 331 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + + R IE I+RS + +++DLLD+S I SGK+ L PV L + + A Sbjct: 332 RAYDEAMFKRGIE---AIERSARTQVHLIDDLLDMSAILSGKVPLEVGPVDLADVLERAR 388 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 ++ A +K I I T F +P + D +KQ+ N+L+NA+ FTP GG I +S H Sbjct: 389 ETIEPMARQKNITIDTEFL-PVPMLQGDAGRLKQVFWNLLANAVKFTPEGGHIRLS-VHP 446 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 S E V+ VRDTG+G+ L F Q S R G GLGL +AK +V+ + G+ Sbjct: 447 SPEGVVATVRDTGIGIEPAFLPHIFDRFQQADLSNTRRHGGLGLGLAIAKQLVELHHGRI 506 Query: 793 YIFSTPA-KGTLIEIIFPLY 811 S+ A +GT + + PL+ Sbjct: 507 TAASSGADRGTTMAVSLPLH 526 >gi|188588291|ref|YP_001921255.1| Two component system histidine kinase [Clostridium botulinum E3 str. Alaska E43] gi|188498572|gb|ACD51708.1| Two component system histidine kinase [Clostridium botulinum E3 str. Alaska E43] Length = 681 Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 91/240 (37%), Positives = 139/240 (57%), Gaps = 2/240 (0%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A K ++ KS FLA +SHE+RTPL+AII SE++K + FG L N + +++ I Sbjct: 430 LREAIKGLKEADKIKSLFLANMSHELRTPLSAIITCSEILKEEIFGEL-NSKQLKHITNI 488 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SGN +L ++N++LDISKIE+GKM L S+ + E+ S+++ A K I I + Sbjct: 489 LNSGNHLLHLINNVLDISKIEAGKMKLTIGEYSISDIAMESFSVLKSLAYRKNIEINLNI 548 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + I D +KQI N++SN+I FT GG+I I+ T + L + D G+G+ Sbjct: 549 EPSDFIIKIDANKLKQILYNLISNSIKFTEEGGKIQINITKNL-AYMKLIIEDNGIGIKK 607 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + ++ F Q+ NS + + EGTGLGLPL K +V+ + G+ ++ S GT I I P Sbjct: 608 EDQKRIFNEFEQVDNSYERKYEGTGLGLPLTKKLVEMHGGEIFLISNIGTGTKIIITIPF 667 >gi|20091095|ref|NP_617170.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19916193|gb|AAM05650.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 887 Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 90/243 (37%), Positives = 144/243 (59%), Gaps = 3/243 (1%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+SE K+ + +L AK AE + S+FLA +SHE+RTPLTAIIGFSE++ + G Sbjct: 312 DLSERKKVEEELLQAKLAAEGANRAMSEFLATMSHELRTPLTAIIGFSELMLGEATGEFD 371 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 ++ +I SG +L ++N ++D+S+IE+GKM+L + SL + ++ S+ A Sbjct: 372 ELNR-KFLGHISNSGKHLLSLINSVIDLSRIEAGKMDLEPDFFSLYDIFADTKSISSPLA 430 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 +K I + + ++ I AD KQI N++SNAI FTP+GG + + + N + + Sbjct: 431 LKKNISMDFNVESDF-LIYADRTRFKQIMYNLVSNAIKFTPAGGSVEVVGRRSEN-RIRV 488 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G++ E++ KPF QI + E TGLGL L+K V+ + G+ ++ S P Sbjct: 489 TVSDTGIGISQDEIKHLFKPFKQINFALSREYESTGLGLVLSKNFVEMHGGRIWVESEPG 548 Query: 800 KGT 802 KG+ Sbjct: 549 KGS 551 >gi|315645559|ref|ZP_07898683.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus vortex V453] gi|315279037|gb|EFU42347.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus vortex V453] Length = 639 Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 104/361 (28%), Positives = 189/361 (52%), Gaps = 18/361 (4%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 D+++ +++++ + + S+ + D I N EG I++ N+ +L G+ + +++ + Sbjct: 125 DSKVAEQRLQESIERYTSLKKYNHDAIISFNLEGKIINGNQMAEQLTGFKIPELIGTKIS 184 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLT 557 + + L+ ILS + + ++ ++ P ++ Sbjct: 185 RLIGERN-------LSRILSSAADYVAVEKGINGIHHRDGHTVEVLATLAPIVIHNQNVG 237 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + I++ E+ +L K+ AEK + KS+FLA +SHEIRTP+ +IG +++I Sbjct: 238 FYIIAKDMTEQKRLIIEKEAAEKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLILETEL-- 295 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + +Y I +SG +L+I+ND+LD SKIESG+ L E SL A+SE ++++ Sbjct: 296 --DEEQRDYVQIIKKSGTTLLNIINDILDFSKIESGRTELVEETFSLRIALSETMNMILP 353 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST---THTS 733 A EK I + TS A+ +P ++ D+ ++Q+ +N+LSNAI FTP+G + IS H Sbjct: 354 KALEKNIEVTTSVASEVPDQVHGDVTKLRQVLMNLLSNAIKFTPNGA-VSISVQCLNHEG 412 Query: 734 NEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 N +I V DTG+G+ ++ +PF Q+ + + EGTGLGL + K +V G Sbjct: 413 NPPLIQFSVVDTGIGVPEEKVAHLFEPFYQVDHYMTRKVEGTGLGLAICKKLVKLMGGDI 472 Query: 793 Y 793 + Sbjct: 473 W 473 >gi|323139256|ref|ZP_08074310.1| integral membrane sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242] gi|322395477|gb|EFX98024.1| integral membrane sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242] Length = 923 Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 90/247 (36%), Positives = 135/247 (54%), Gaps = 2/247 (0%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + +LS A+ AE+ S KS FLA +SHE+RTPL AIIG+SE+++ G+ Sbjct: 408 ELQMANEELSVARVAAEEASKTKSAFLANMSHELRTPLNAIIGYSEMLQEDALDK-GDAE 466 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +E I+ +G +L ++ND+LD+SKIE+GKM + E V + V+E +S+VQ A + Sbjct: 467 PLEDLKKIEGAGRHLLGLINDILDLSKIEAGKMEVFIEKVDIRPLVNEVMSIVQPLAEKN 526 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + ++ +D VKQ LN++SNA FT S G++ + + V+ RV Sbjct: 527 GNALELVCPDDAGSFHSDETKVKQCLLNLMSNANKFT-SKGKVTLIVERDAQASVVFRVS 585 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+GMT +L + F Q S R GTGLGL + K +A G+ + S P G+ Sbjct: 586 DTGLGMTEEQLGRLFLAFTQADASTTKRFGGTGLGLAITKHFCNALGGQISVQSAPDAGS 645 Query: 803 LIEIIFP 809 I P Sbjct: 646 TFTITLP 652 >gi|330878543|gb|EGH12692.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 775 Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 129/443 (29%), Positives = 221/443 (49%), Gaps = 52/443 (11%) Query: 398 ARLHTIQWNREN-SLAMTFIPFEKANQFPEN--MPQNGIEPEDVDTRINKRKMEI----E 450 AR+H +Q N + +L +P Q PE + Q G + + +R+ + E Sbjct: 215 ARVHQVQRNAQRLALGHPLLP-----QPPEKDEIGQLGTRLVEAGQLLAERERALRDNEE 269 Query: 451 VMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSV 508 ++L I+E D GI ++R G + + N ++ GY ++I+ + F+VF L Q P Sbjct: 270 RLRL--IIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQH 327 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEW 564 + L E +++ R T E + K+ ++I S+ +S DIS+ Sbjct: 328 PDMALHEA-TVNGRYTEE--SWRRRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDR 384 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQRFGPLG 619 + + L A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ +QR Sbjct: 385 RVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQR----- 439 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +I R+G +L ++N++LDI++IE+G ++L EPVSL + E + LV A Sbjct: 440 -----PQVGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMA 494 Query: 680 NEKRILIRTSFANNIPR------ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + I + +P ++AD + + Q+ LN+LSNAI + GQ+ I S Sbjct: 495 ADGNIEL-----EELPHLPDELGVIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDR-S 548 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E V + V DTG G+ L + KPF ++ + + EGTGLGL L+K+M++ G Sbjct: 549 AERVTVSVVDTGYGIAPERLGQLFKPFERLDANPSV--EGTGLGLALSKSMLEMMNGTLS 606 Query: 794 IFSTPAKGTLIEIIFPLYDTSHP 816 + +T +G + P P Sbjct: 607 VQTTQNEGCCFTLALPFVAVHAP 629 >gi|241762807|ref|ZP_04760871.1| histidine kinase [Acidovorax delafieldii 2AN] gi|241368226|gb|EER62418.1| histidine kinase [Acidovorax delafieldii 2AN] Length = 844 Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 91/269 (33%), Positives = 143/269 (53%), Gaps = 25/269 (9%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 N L+ + ++ S KSDFLA +SHE+RTPL AIIGFSEV+K+ G + P+ E+ + Sbjct: 306 NLLAEKNQQLQEVSQLKSDFLANMSHELRTPLNAIIGFSEVLKDGLVGEI-TPKQHEFVS 364 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I SG +L ++ND+LD+SKIE+GKM L + +D + ++S+V+ A+ IL++ Sbjct: 365 DIFASGQHLLSLINDILDLSKIEAGKMTLDLDTQDVDAMLRNSLSIVKEKASAHAILLQF 424 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST---------THTSNEEVIL 739 A + L D R KQI N+LSNA+ F+ + G++ + T + + L Sbjct: 425 DVAEPLGMALLDARKTKQIVFNLLSNAVKFSANNGKVTLQARKVQRAAIETWATQQPTSL 484 Query: 740 R---------------VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 R V DTG+G++ ++ + + F Q+ +S EGTGLGL L + Sbjct: 485 RMPLPPSAFADFLEIAVVDTGLGISAADVPRLFQAFSQLDSSLSRVSEGTGLGLALVLKL 544 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 V + G + STP G+ + P T Sbjct: 545 VQLHGGTVALASTPGHGSTFTVWLPWRKT 573 >gi|330962291|gb|EGH62551.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 775 Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 127/439 (28%), Positives = 223/439 (50%), Gaps = 46/439 (10%) Query: 398 ARLHTIQWNREN-SLAMTFIPFEKANQFPEN--MPQNGIEPEDVDTRINKRKMEI----E 450 AR+H +Q N + +L +P Q PE + Q G + + +R+ + E Sbjct: 215 ARVHQVQRNAQRLALGHPLLP-----QPPEKDEIGQLGTRLVEAGQLLAERERALRDNEE 269 Query: 451 VMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSV 508 ++L I+E D GI ++R G +++ N ++ GY ++I+ + F+VF L Q P Sbjct: 270 RLRL--IIEGVKDYGIFALDRNGYVITWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQH 327 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEW 564 + L E +++ R T E + K+ ++I S+ +S DIS+ Sbjct: 328 PDMALHEA-TVNGRYTEE--SWRRRKDGSRFWASVVITAQYDSNDQLRGFSKITRDISDR 384 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK-----NQRFGPLG 619 + + L A++ AE+ S KS+FL+R+SHE+RTPL +I+GF+++++ +QR Sbjct: 385 RVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLEMDSPASQR----- 439 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +I R+G +L ++N++LDI++IE+G ++L EPV L + EA+ LV A Sbjct: 440 -----PQVGHILRAGQHLLKLINEVLDIARIEAGHISLSLEPVPLSNVLQEALVLVSPMA 494 Query: 680 NEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 + I +P ++AD + + Q+ LN+LSNAI + GQ+ I S E Sbjct: 495 ADGN--IELPALPQLPDELGVVADRQRLIQVLLNLLSNAIKYNRPNGQVRIEVEQ-SAER 551 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V + V D+G G+ +++ KPF ++ + EGTGLGL L+K+M++ G + S Sbjct: 552 VAVSVVDSGHGIAPELIDQLFKPFERLNADPSV--EGTGLGLALSKSMLEMMHGTLSVHS 609 Query: 797 TPAKGTLIEIIFPLYDTSH 815 P +G+ + P+ Sbjct: 610 VPGEGSRFTLELPVVQVQQ 628 >gi|303327943|ref|ZP_07358382.1| sensory box sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] gi|302861769|gb|EFL84704.1| sensory box sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] Length = 825 Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 91/260 (35%), Positives = 146/260 (56%), Gaps = 13/260 (5%) Query: 565 KQEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 ++E N+ L AK+ AE + KSDFLAR+SHEIRTP+ AI+G ++ N + + Sbjct: 433 RRELNRALRLAKEEAEAGTRAKSDFLARMSHEIRTPMNAILGMCHLLLNTGL----SEQQ 488 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 +Y ++ +LDI+ND+LD SKIESGK ++ P L E + ++ + A EK Sbjct: 489 RDYLCKTRQAARNLLDIINDILDFSKIESGKFDVETAPFPLAEMLDGIRNVAGVRAAEKG 548 Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VI 738 I + + + ++P ++ D V Q+ +N++SNA+ FT G ++ +S + E + Sbjct: 549 IRLSVAASPDMPGELVGDALRVSQVLINLVSNAVKFTERG-EVAVSVSPRHRREDSLLAL 607 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 VRDTG+GM+ E+ + +PF Q S R GTGLGL + K +V+ GK + S P Sbjct: 608 FEVRDTGIGMSREEVARIFRPFTQTDTSITRRYGGTGLGLVICKELVEMMGGKISVSSEP 667 Query: 799 AKGTL--IEIIFPLYDTSHP 816 +G++ E+ F L D + P Sbjct: 668 GRGSIFCFELPFKLPDAAIP 687 >gi|22298419|ref|NP_681666.1| two-component hybrid sensor and regulator [Thermosynechococcus elongatus BP-1] gi|22294598|dbj|BAC08428.1| two-component hybrid sensor and regulator [Thermosynechococcus elongatus BP-1] Length = 1035 Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 85/259 (32%), Positives = 143/259 (55%), Gaps = 15/259 (5%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DIS+ Q++ L A++ AE+ S KS+FLA +SHEIRTP+ AIIG + ++ + Sbjct: 466 TWEDISQMMQQQELLEVARQAAEEASRAKSEFLATMSHEIRTPMNAIIGLTGLLLDT--- 522 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL NP+ E+ N I SG+ +L ++ND+LD SKIESGK+ L P +L V E + L+ Sbjct: 523 PL-NPQQQEFVNTIRLSGDALLGVINDILDFSKIESGKLELESYPFNLRTCVEEVLDLLA 581 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---- 731 A E+ + + + +P ++ D+ ++Q+ +N++ NAI FT G + Sbjct: 582 SRAAEREVELAAHIDSGVPCAVIGDMGRLRQVLVNLIGNAIKFTQKGNVTLYVKAKPMPM 641 Query: 732 ------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 S + ++DTG+G++ + + KPF Q+ S + GTGLGL + + +V Sbjct: 642 SQYEFMPSYYSYLFAIQDTGIGISAAGMNRLFKPFSQVDASTTRQYGGTGLGLVICQRLV 701 Query: 786 DANMGKFYIFSTPAKGTLI 804 + G+ ++ S +L+ Sbjct: 702 ERMGGQIWVESKKTGESLV 720 >gi|289207719|ref|YP_003459785.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio sp. K90mix] gi|288943350|gb|ADC71049.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio sp. K90mix] Length = 697 Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 104/384 (27%), Positives = 194/384 (50%), Gaps = 24/384 (6%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 ++ ++ + +L ++LE + GI I+ G I N A +LF YP E +L ++ + Sbjct: 170 SRSALDAQGQRLAAVLETAAAGIIQIDHTGHIEQFNSAAERLFDYPAEQVLGHNVSMLMP 229 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKL--------LSLRIIIKKLPFSSC 553 + YL R+T + +GS +E E L + L + ++ Sbjct: 230 ARWAHEHDDYLRHY-----RETGQARVIGSGREVEGLRRDGSTFPMQLAVSEVRIEEQPH 284 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSEVIK 611 Y + D+++ + S +++AE E ++ KS+FL+ +SHE+RTPL +I+GFS++++ Sbjct: 285 YIGIVTDLTDLHE-----SQRRELAEAERANRAKSEFLSSMSHELRTPLNSILGFSQLMR 339 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 R PL R +I+RSG +L ++ND+LD+S+IE+G+M + EP ++E Sbjct: 340 ADRTHPLPE-RQQRQVEHIERSGQHLLALINDILDLSRIEAGRMAMSLEPTDPAMTLAEC 398 Query: 672 ISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 +++ A E+ I + +P + AD +KQ+ LN++SNAI + G + + T Sbjct: 399 HGMIEGEARERGIQLDFPPPEPALPAVQADHTRLKQVLLNLVSNAIKYNRDKGIVRVRVT 458 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + RVRDTG+G+ + +PF ++ + +G+G+GL +++ +V G Sbjct: 459 PMPEGRMEFRVRDTGLGIPEDRRAELFRPFSRL-GHETGAIQGSGIGLVISRELVRHMGG 517 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTS 814 + S +GT P+ T+ Sbjct: 518 ELEYQSREGEGTDFFFTLPMSCTA 541 >gi|254410199|ref|ZP_05023979.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196183235|gb|EDX78219.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1855 Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 93/299 (31%), Positives = 149/299 (49%), Gaps = 62/299 (20%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L+HA ++ K +FLA +SHE+RTPL AI+G SE ++ + +G + + A Sbjct: 1417 ELAHATRL-------KDEFLANMSHELRTPLNAILGLSESLQEEVYGEITEKQRKSLAT- 1468 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++SG +L+++ND+LD++KIESGK+ L+ V + + ++SL++ A EK I + + Sbjct: 1469 IEKSGRHLLELINDILDLAKIESGKLELNLTAVRISQLCDASLSLIKPLALEKNITLSGN 1528 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS--------------------- 728 A + IL D R ++Q+ +N+LSNA+ FTP GGQ+ + Sbjct: 1529 IAAGLGTILGDERRLQQVLINLLSNAVKFTPEGGQVTVEIRKQDGGDERDKEVNATFSQG 1588 Query: 729 -------------------TTHT------------SNEEVILRVRDTGVGMTNYELEKAM 757 T HT NE + + V DTG+G+ EK Sbjct: 1589 GFCSNVTISSQKKIPKPAPTNHTLEGEEELTFNTSPNEMLYISVSDTGIGIAKEHREKLF 1648 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + F QI +S R +GTGLGL L + +V+ + G + S KG+ + P SHP Sbjct: 1649 QSFVQIDSSLSRRHQGTGLGLALVRRIVELHGGWVTVESEIGKGSCFTVRLPW--RSHP 1705 >gi|220908073|ref|YP_002483384.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219864684|gb|ACL45023.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1305 Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 88/247 (35%), Positives = 139/247 (56%), Gaps = 15/247 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 ++ +L+ AK AE ++ KS+FLA VSHEIRTP+ A+IG S ++ + P + Sbjct: 600 RQNEELTAAKHAAEVANAAKSNFLAIVSHEIRTPMNAVIGMSGLLLDTCL----TPEQFD 655 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y I S + +L I+ND+LD SKIESGK+ L +P L + EA+ L+ A K + Sbjct: 656 YVETIRNSSDTLLTIINDILDFSKIESGKLELEEQPFDLRICIEEALDLLAPQAASKGLD 715 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---------HTSNE 735 + ++P +I+ D+ ++QI N+LSNA+ FT + G+++IS S Sbjct: 716 LVYFIDPHLPTQIIGDITRLRQILWNLLSNAVKFT-AMGEVVISVQGRELEFYPPFISTY 774 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 E+ V+DTGVG+ ++E+ KPF Q S R GTGLGL ++K + + G+ ++ Sbjct: 775 EIQFAVQDTGVGIAREQMERLFKPFSQGDASMTRRYGGTGLGLAISKRLSELMRGRMWVA 834 Query: 796 STPAKGT 802 S KG+ Sbjct: 835 SQEGKGS 841 >gi|187926379|ref|YP_001892724.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J] gi|187728133|gb|ACD29297.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J] Length = 678 Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 95/260 (36%), Positives = 145/260 (55%), Gaps = 13/260 (5%) Query: 560 DISEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 DISE +Q + + S A++ AE+ S K DFLA VSHE+RTPL A++G+++++ Sbjct: 267 DISERRQAEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLNM 326 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + + R IE I+RS + +++DLLD+S I SGK+ L PV L + + A Sbjct: 327 RAYDEAMFKRGIE---AIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERAR 383 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 ++ A +K I I T F +P + D +KQ+ N+L+NA+ FTP GG I +S H Sbjct: 384 ETIEPMARQKNITIETEFL-PVPMLQGDAGRLKQVFWNLLANAVKFTPEGGHIRLS-VHP 441 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + E V+ VRDTG+G+ L F Q S R G GLGL +AK +V+ + G+ Sbjct: 442 APEGVVATVRDTGIGIEPTFLPHIFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRI 501 Query: 793 YIFSTPA-KGTLIEIIFPLY 811 S+ A +GT + + PL+ Sbjct: 502 TAASSGADRGTTMAVSLPLH 521 >gi|295399495|ref|ZP_06809477.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|312109947|ref|YP_003988263.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] gi|294978961|gb|EFG54557.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|311215048|gb|ADP73652.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] Length = 585 Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 111/379 (29%), Positives = 184/379 (48%), Gaps = 48/379 (12%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 + E++ +L +++E G+ +I+R G I NRA ++F D L +P+ Sbjct: 235 KAQEMQTDRLHTLIENVGSGLILIDRRGYINLINRAFKEIFHIRPVDYLYRPYAEAFAHK 294 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS------------- 551 ++ Q + +I + TK K + L I I++ F Sbjct: 295 ---------------EIVQLVNEIFMKETKVRKQMLLTIGIERKHFEVYGAPIIGTNDEW 339 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 L HDI+E K KL +K DF+A VSHE++TP+T+I GF+E + Sbjct: 340 KGIVLVFHDITELK----KLEQMRK----------DFVANVSHELKTPITSIKGFAETLL 385 Query: 612 NQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + G + + R +E + + I + + +V DLLD+SKIE + LH E V L + E Sbjct: 386 D---GAMKDERTLEHFLSIIWKESERLQTLVQDLLDLSKIEQQEFQLHMETVDLTHLLHE 442 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + Q A EK I R A +I + D +KQI +N+++NA+ +TP GGQ+ + Sbjct: 443 IAIMFQRKAEEKGIDFRMHAAKSIY-MEGDANRLKQIFINLITNALTYTPKGGQVEV-IA 500 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 EE ++ V+DTG+G+ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 501 EEQEEETLVHVKDTGIGIEEAEIPRIFERFYRVDKARSRHSGGTGLGLAIVKHLVEAHHG 560 Query: 791 KFYIFSTPAKGTLIEIIFP 809 + S KGT + FP Sbjct: 561 HITVKSAVGKGTTFTVHFP 579 >gi|269104721|ref|ZP_06157417.1| sensor protein LuxQ [Photobacterium damselae subsp. damselae CIP 102761] gi|268161361|gb|EEZ39858.1| sensor protein LuxQ [Photobacterium damselae subsp. damselae CIP 102761] Length = 570 Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 84/246 (34%), Positives = 141/246 (57%), Gaps = 7/246 (2%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A+K AE DFLA ++HE+RTPL ++G +E++ + + + + ++ S Sbjct: 201 AQKRAENSERSTRDFLAMINHELRTPLNGLLGAAELLADTSL----SSEQKKLLDTLNNS 256 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G L+ I+NDLLD SKI +G + L +P + + ++ +++ A EK++L+ N Sbjct: 257 GELLRAIINDLLDYSKISAGMLELIIKPFNPHQIINNLADIMRYQAQEKQLLLTLVIDNT 316 Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 +P +L D +KQI +N+++NAI FT + G II++TT +++I +V+DTG+G+T + Sbjct: 317 VPNCLLGDEDRIKQIFVNLINNAIKFT-NRGSIILNTTWCE-DKLIFQVKDTGIGITEGQ 374 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 K KPF Q+ S Q EGTGLGL + K + + G+ + S P +G+ +I PL Sbjct: 375 QLKLFKPFSQVDISSQRIHEGTGLGLAICKQLCELMSGEIKLISIPEQGSTFTVILPLKL 434 Query: 813 TSHPHD 818 P D Sbjct: 435 CDTPLD 440 >gi|307151259|ref|YP_003886643.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306981487|gb|ADN13368.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1067 Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 102/368 (27%), Positives = 182/368 (49%), Gaps = 25/368 (6%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 + IL+ ++ I I+ I N A K FGY ++++ + F + L + + Y Sbjct: 468 RFAGILDNANEAIISIDENQQITLFNHAAEKTFGYQAQEVIGQSFNLLLPSDYGEIHQQY 527 Query: 513 LTEILSLDLRQTLEKI-----TLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWK 565 + QT +++ G ++ + I KL ++ + DI+E K Sbjct: 528 INTFAKAS--QTAKQMGGRNPVFGRRQDGTAFLAEVSISKLVQRGKILFTAIVRDITERK 585 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q + L AK+ A+ + KS+FLA +SHE+RTPL AI+GF++V+ +E Sbjct: 586 QAEEALKQAKEAADNANRAKSEFLASMSHELRTPLNAILGFTQVLARNSALKEEEKTNLE 645 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I RSG +LD++ND+L++SKIE+G+ + L + +++L A K + Sbjct: 646 ---IISRSGEHLLDLINDILEMSKIEAGRTTFNQSSFDLYRLLDSLEDMLRLRAEAKGLQ 702 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT---------PSGGQIIISTTHTSNE 735 + A+++P+ I D ++Q+ +N++ NAI FT SGG++ + + + Sbjct: 703 LIFDSASDVPQYIQTDEGKLRQVLINLIGNAIKFTDEGGVTLRVKSGGKVPLESPKMAT- 761 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V DTG G+ E++ + FGQ ++ +GTGLGLP++K V+ G+ + Sbjct: 762 -ITFEVEDTGPGIALDEIDNLFEAFGQTETGRK-SNQGTGLGLPISKKFVELMGGEIRVS 819 Query: 796 STPAKGTL 803 S P G+L Sbjct: 820 SVPGNGSL 827 >gi|153868800|ref|ZP_01998541.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS] gi|152074617|gb|EDN71454.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS] Length = 1054 Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 111/386 (28%), Positives = 198/386 (51%), Gaps = 30/386 (7%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILR 494 ED+ R + E + + + L+ ++D I I++R+ + + N+ GY ++L Sbjct: 641 EDITER---KHAEESLRRFRAALDNSADAIFIVDRQTMNFVDMNKIACDSIGYSYNELLS 697 Query: 495 ------KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 KP+ T + + EI+ + + T+E T+ K+ + ++ L Sbjct: 698 MGPQDIKPYF------TKAQLATKFDEIIQSECQGTIE--TVHQRKDGTEFPVENFLQSL 749 Query: 549 PFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 F Y L + DI+E KQ + L AK+ A+ + KS+FLA +SHEIRTP+ A+IGF Sbjct: 750 KFDEGYLLISSARDITEHKQAEIALIQAKEQADSANRAKSEFLANMSHEIRTPMNAVIGF 809 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 S+++ ++ + + + Y + I +G +L ++ND+LD+SKIE+G++++ +EPV+L Sbjct: 810 SDILASK----VTDKKQKTYLDSIQTAGKSLLTLINDILDLSKIEAGRLDIQYEPVNLQL 865 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-Q 724 +E + L EK + +P +L D ++Q+ LN++ NAI FT SG + Sbjct: 866 IFTELQQIFSLKMAEKNLEFILETDETLPPVLFLDETRLRQMLLNLMGNAIKFTDSGYIK 925 Query: 725 IIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 + + T N+ ++IL V D+G+G+ + + F Q + GTGLGL + Sbjct: 926 LCANKGSTENDHSQVDLILAVEDSGIGIPAEQQALIFESFRQQDGQSTRQYGGTGLGLAI 985 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEI 806 K +V+ G + S P KG+ EI Sbjct: 986 TKRLVEMMNGHITVESHPGKGSRFEI 1011 >gi|20091380|ref|NP_617455.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19916516|gb|AAM05935.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 726 Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 85/251 (33%), Positives = 140/251 (55%), Gaps = 2/251 (0%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I+E K + +L AK+ AE + KS FLA +SHE+RTPL +IIGFS+++ + +G L Sbjct: 473 EITERKNYEIELFRAKQDAEVANRAKSAFLANMSHELRTPLNSIIGFSDLLYEKVYGEL- 531 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N + + I SG +L+++N++LD+SK+E+G LH+ L E +E ++ +A Sbjct: 532 NLKQTKAVGNISNSGKHLLNLINEILDLSKVEAGSFELHYSTFWLAEVFAEVRDMIFPFA 591 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K + I +N+ R+ AD + Q+ N+++NA+ F+ G + + + + Sbjct: 592 TSKGLKIELEIDSNLSRVYADKERILQVLSNLVTNAVKFSNENGCVKVKAVQMDG-FLKI 650 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V D G+G+ + EK KPF QI +S R +GTGLGL L K +V + G + S Sbjct: 651 TVADDGIGIAAADHEKLFKPFSQIDSSFSKRYQGTGLGLALVKEIVQLHGGTVWFESEVG 710 Query: 800 KGTLIEIIFPL 810 KG++ PL Sbjct: 711 KGSVFGFSIPL 721 >gi|294495506|ref|YP_003541999.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292666505|gb|ADE36354.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 962 Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 100/364 (27%), Positives = 194/364 (53%), Gaps = 15/364 (4%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLF--GYPVEDILRKPFTVFLEQNTPSVMNH 511 L SI+E+ DG++I++ + I+ N A++K + P+E +K + + ++++P Sbjct: 604 LNSIIESIKDGVSILDADMNIVRVNDAMNKWYEKNTPLEG--KKCYEAYHDRDSPCTP-- 659 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-----MHDISEWKQ 566 I ++ +T I G E ++ L S+ +T + DI++ K+ Sbjct: 660 -CPVIRCMETGETERNIVQGLPDPEPQW-FELLAYPLKDSTTGEITGTVEFVKDITDHKR 717 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + +L+ A+ + S S+ A + HE+RT L IIGF++++ N +G L NP+ ++ Sbjct: 718 AEAELAEARLHGREVSKTNSELKANLGHELRTSLGNIIGFTQMLHNNIYGRL-NPKQQKH 776 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I +S ++++++D+L+IS +E+GKM L+ E S+ E ++E + ++ +A ++ + I Sbjct: 777 IQGIQKSAEHLMNLIDDILEISDVEAGKMELNIEMFSIIELLNEILIFLKPFAEDRNVEI 836 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T IP I D +KQ N++ NAIHFTP G + IS ++S ++ V D+G+ Sbjct: 837 TTDIPEYIPEINVDKAKIKQAIYNLIINAIHFTPEGRNVHISMEYSSY-DLKFEVNDSGI 895 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G++ +LE+ +PF +I + ++ + LGL LAK ++ + G+ + S G Sbjct: 896 GISPTQLEELFRPFKEIYSESGVKPPDSNLGLSLAKEYIELHGGEIEVESESGAGNSFVF 955 Query: 807 IFPL 810 P+ Sbjct: 956 TIPI 959 >gi|239947837|ref|ZP_04699590.1| histidine kinase sensor protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239922113|gb|EER22137.1| histidine kinase sensor protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 497 Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 87/237 (36%), Positives = 140/237 (59%), Gaps = 6/237 (2%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 EK SS + F A +SHE+RTPL AIIGFSE++ ++R + Y I+ +G +L Sbjct: 263 EKTSSSNTKFFANISHELRTPLNAIIGFSEILMSER----DAEKSKNYIKDINDAGKHLL 318 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++ND+LD+SK + K+ + + L++ +S ++ LV+ A++ + + + I Sbjct: 319 SMINDILDLSKASADKLKVDSIDLDLNKLISSSLILVKPRADQAEVALISRLPKEHVVIK 378 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAM 757 AD + +KQ+ LN+LSNA+ FT SGG + I+ +++ ++V DTG+G+ ++ K + Sbjct: 379 ADPKRLKQVFLNLLSNAVKFTNSGGSVTIALEKDELAKLVYIKVIDTGIGIEEKDIPKTL 438 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 FGQI + + EGTGLGLPL K +V+ GKF + S +GT I I F YD S Sbjct: 439 SAFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQSKINEGTTITITFT-YDGS 494 >gi|330963166|gb|EGH63426.1| two-component sensor/regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 576 Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 104/381 (27%), Positives = 178/381 (46%), Gaps = 30/381 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S++E+ D + + + +GII N+ + L G ++++ P F P+ + + Sbjct: 187 SLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAPCKNFF--TDPASADAAIKR 244 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIII---KKLPFSSCYSLTMHDISEWKQEKNKLS 572 +LS E E ++S + ++ D++E K+ + L Sbjct: 245 VLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFA-AARDVTERKRFERTLE 303 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 E S KS+FLA +SHE+RTPL A+IGFSE +K+ G + + + Y I Sbjct: 304 EKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDAQR-RYIGDIFN 362 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 S +L ++ND+LD+SK+E+G M L E V LDE +S ++ +V+ A +RI ++ Sbjct: 363 SSQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQAALQRIQLKLETEA 422 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL------------- 739 + + D R KQI N+L+NA+ F+ GG + ++ S +V + Sbjct: 423 DFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSRAQVGILGGDWPVHSFPLP 482 Query: 740 ----------RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 V DTG+G+ ++ K K F QI +S + EGTGLGL + K + + + Sbjct: 483 PGDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLARKFEGTGLGLAMVKQLTELHG 542 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G + S G + P+ Sbjct: 543 GCVAVASVKDLGARFVVWLPI 563 >gi|326326124|ref|YP_004250934.1| putative sensor protein [Vibrio nigripulchritudo] gi|323669176|emb|CBJ93233.1| Putative sensor protein [Vibrio nigripulchritudo] Length = 688 Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 90/262 (34%), Positives = 144/262 (54%), Gaps = 6/262 (2%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y T+ DIS+ K +L A+ AEK + KS FLA +SHEIRTPL AI+G +V+ Sbjct: 296 YRGTVKDISQSKLRYLELKRARSEAEKANQAKSQFLATMSHEIRTPLNAILGLIDVL--- 352 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + + ++ S L+L I++D+LD+SKIESG++ L + V++ + VS + Sbjct: 353 -LSKCTDKNNTDVLRMMESSAELLLAIISDVLDLSKIESGRVELSVKSVNVRDVVSGNLQ 411 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 QL ANEK + + A++IP +I D + QI N++ NA+ FT + G+I + Sbjct: 412 HYQLVANEKGLKLSLDLADDIPHQIHTDATRLSQILFNLVGNAVKFTEA-GEIRVKVIRQ 470 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + +++RV DTG+G+ LEK KPF Q S R G+GLGL ++K + G Sbjct: 471 PGQTLVIRVTDTGLGIDESVLEKVFKPFIQADGSITRRFGGSGLGLAISKQLAKLLGGDI 530 Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814 + S +G+ + P+ ++ Sbjct: 531 TVKSQRHQGSEFTLTLPIIHSA 552 >gi|241665866|ref|YP_002984225.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D] gi|240867893|gb|ACS65553.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D] Length = 631 Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 95/260 (36%), Positives = 145/260 (55%), Gaps = 13/260 (5%) Query: 560 DISEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 DISE +Q + + S A++ AE+ S K DFLA VSHE+RTPL A++G+++++ Sbjct: 220 DISERRQAEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLNM 279 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + + R IE I+RS + +++DLLD+S I SGK+ L PV L + + A Sbjct: 280 RAYDEAMFKRGIE---AIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERAR 336 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 ++ A +K I I T F +P + D +KQ+ N+L+NA+ FTP GG I +S H Sbjct: 337 ETIEPMARQKNITIETEFL-PVPMLQGDAGRLKQVFWNLLANAVKFTPEGGHIRLS-VHP 394 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + E V+ VRDTG+G+ L F Q S R G GLGL +AK +V+ + G+ Sbjct: 395 APEGVVATVRDTGIGIEPTFLPHIFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRI 454 Query: 793 YIFSTPA-KGTLIEIIFPLY 811 S+ A +GT + + PL+ Sbjct: 455 TAASSGADRGTTMAVSLPLH 474 >gi|330967781|gb|EGH68041.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 775 Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 129/443 (29%), Positives = 221/443 (49%), Gaps = 52/443 (11%) Query: 398 ARLHTIQWNREN-SLAMTFIPFEKANQFPEN--MPQNGIEPEDVDTRINKRKMEI----E 450 AR+H +Q N + +L +P Q PE + Q G + + +R+ + E Sbjct: 215 ARVHQVQRNAQRLALGHPLLP-----QPPEKDEIGQLGTRLVEAGQLLAERERALRDNEE 269 Query: 451 VMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSV 508 ++L I+E D GI ++R G + + N ++ GY ++I+ + F+VF L Q P Sbjct: 270 RLRL--IIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQH 327 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEW 564 + L E +++ R T E + K+ ++I S+ +S DIS+ Sbjct: 328 PDMALHEA-TVNGRYTEE--SWRRRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDR 384 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQRFGPLG 619 + + L A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ +QR Sbjct: 385 RVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQR----- 439 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +I R+G +L ++N++LDI++IE+G ++L EPVSL + E + LV A Sbjct: 440 -----PQVGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMA 494 Query: 680 NEKRILIRTSFANNIPR------ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + I + +P ++AD + + Q+ LN+LSNAI + GQ+ I S Sbjct: 495 ADGNIEL-----EELPHLPDELGVIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDR-S 548 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E V + V DTG G+ L + KPF ++ + + EGTGLGL L+K+M++ G Sbjct: 549 AERVTVSVVDTGYGIAPERLGQLFKPFERLDANPSV--EGTGLGLALSKSMLEMMNGTLS 606 Query: 794 IFSTPAKGTLIEIIFPLYDTSHP 816 + +T +G + P P Sbjct: 607 VQTTQNEGCRFTLALPFVAVHAP 629 >gi|260221054|emb|CBA29236.1| hypothetical protein Csp_A11130 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 1191 Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 90/264 (34%), Positives = 145/264 (54%), Gaps = 9/264 (3%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D+++ + +L AK AE + KSDFLA +SHEIRTP+ +IG +E++ + Sbjct: 517 LTDVTQARHISEELQKAKDAAEAANHAKSDFLANMSHEIRTPMNGVIGMTELLLDTTL-- 574 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + EY N + S +L ++ND+LD SKIE+GKM++ P +L+ V++ + V L Sbjct: 575 --DAEQQEYLNIVKSSSEALLRVINDILDFSKIEAGKMDIESIPFNLERTVADTLKTVVL 632 Query: 678 YANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNE 735 A++K + + A ++PR L D ++Q+ +NIL NAI FT G ++ I SN Sbjct: 633 RAHDKGLEVVWDVAPDVPRALVGDPGRLRQVLVNILGNAIKFTERGEVVLRIRQEVASNG 692 Query: 736 EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + +L V DTG+G+ +L F Q +S + GTGLGL + +V+ G + Sbjct: 693 KPLLHLAVSDTGIGIPANKLGSIFDAFSQEDSSTTRKYGGTGLGLTICARLVEGMGGTIW 752 Query: 794 IFSTPAKGTLIEIIFPLY-DTSHP 816 + STP +G++ L DTS P Sbjct: 753 VESTPGQGSVFHFTVALVKDTSAP 776 >gi|156741626|ref|YP_001431755.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156232954|gb|ABU57737.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 906 Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 134/246 (54%), Gaps = 24/246 (9%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K FLA VSHE+RTPL AIIGFS V+ ++ GP+ P E I+R+G +L ++++L Sbjct: 630 KGQFLAAVSHELRTPLNAIIGFSTVMLDEIDGPI-TPLQREDLKIINRNGRFLLHLIDEL 688 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+++IE+GK++L P+ + + E VQ + ++I + +P D + Sbjct: 689 LDLARIEAGKIDLELAPLDMRALIVEVTETVQGLLHNRQIALNLLLPERLPYACGDAARI 748 Query: 705 KQIALNILSNAIHFTPSG---------------------GQIIISTTHTSNEEVILRVRD 743 +Q+ LN+LSNA+ FTP G G +I+ + + + VRD Sbjct: 749 RQVLLNLLSNAVKFTPQGSITVSARCVAAPENHPGATGSGAVIVRNGQRLHPYIAVSVRD 808 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ +L + + F Q+ + R G+GLGL +++ +++A+ G+ ++ S P KG++ Sbjct: 809 TGIGIAAEDLTRIFEAFNQVRSGN--RQHGSGLGLAISRRLIEAHGGRIWVESEPGKGSV 866 Query: 804 IEIIFP 809 I P Sbjct: 867 FTFILP 872 >gi|153870360|ref|ZP_01999777.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS] gi|152073175|gb|EDN70224.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS] Length = 1105 Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 110/386 (28%), Positives = 197/386 (51%), Gaps = 27/386 (6%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--- 500 +++ E +++ ILE ++G+ + G++L TNR ++++FGY +++ + ++ Sbjct: 478 RKRAEEKLLIQAKILENMAEGVNLTTESGLMLLTNRLLTRMFGYDENELIGQHVSILNSL 537 Query: 501 -LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII----IKKLPFSSC-Y 554 E+N V NH + ++ QT E I G +K I I L S Y Sbjct: 538 SPEENMVFV-NHVIADL------QTKE-IWEGEFNNQKKDGTHFISYAYISALDISGQHY 589 Query: 555 SLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 +T+ DI+E KQ + L AK+ AE + KS+FLA +SHEIRTP+ A++GFSE++ Sbjct: 590 FVTVQEDITERKQAEIALQQAKEQAESANRAKSEFLATMSHEIRTPMNAVLGFSELLSE- 648 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + N + Y + I +G +L +++D+LD++KIE+G++++ +E V+ E Sbjct: 649 ---LVTNKQQKSYLDSIKMAGKTLLTLIDDILDLAKIEAGRLDIQYEAVNPYNIFEELKQ 705 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG----GQIIIS 728 + L +K++ N+P ++ D ++Q+ LN++ NA+ FT G G I Sbjct: 706 IFVLKIVDKQLDFIVDIDENLPLALILDETRLRQVLLNLIGNAVKFTEKGYIKLGAQKID 765 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 S ++++ V DTG+G+ + E + F Q + GTGLGL + + +V+ Sbjct: 766 KMDKSKIDLLISVEDTGIGIPLAQQEMIFEAFRQQDGQSNRKYGGTGLGLAITRRLVEMM 825 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTS 814 G + T KG++ I D S Sbjct: 826 NGDISVTGTVGKGSIFNISLQDVDIS 851 >gi|99080183|ref|YP_612337.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040] gi|99036463|gb|ABF63075.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040] Length = 827 Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 106/377 (28%), Positives = 195/377 (51%), Gaps = 19/377 (5%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPF 497 +T + + + E+E QL ++ + SD I + + I N A S++ GY V E + ++P Sbjct: 304 ETELERNQAELE--QLSTVAQNASDSIVLSGPDQRIFWVNEAFSRMTGYTVDEAVGKRPG 361 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYSL 556 + T ++E +S R L + L TK K + + ++ L ++ Sbjct: 362 ELLNGPETDPATIREISEYISRGER--LHREILNYTKSGKTIWVDTNLVPVLDEDGEINM 419 Query: 557 TM---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + D++ KQ +L+ AK AE+ K++FLA +SHEIRTP+ IIG ++++ Sbjct: 420 VIGIERDVTSQKQNAAELAVAKVAAEQADRTKTEFLANMSHEIRTPMNGIIGMADLLSET 479 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD--EAVSEA 671 + +Y I S +L I+ND+LD++++ESGK++L EPV D + A Sbjct: 480 EL----HEDQEQYVQIIRTSSKALLKIINDILDLTRMESGKLSL--EPVDFDLESCIENA 533 Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIIST 729 + +++ A+EK + + ++A+ +PR + AD ++QI +N++ NA+ FT SG + + Sbjct: 534 VDILRPVASEKGLDLTVNYASGLPRTVRADDGRLRQILVNLVGNAVKFTASGRVDVRVLC 593 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 T+ + + V+DTG+GMT+ +L F Q + GTGLGL +++ + Sbjct: 594 ASTNPYRLTIDVQDTGIGMTSAQLHNIFDRFSQADAATTRSFGGTGLGLTISRLLAKQMD 653 Query: 790 GKFYIFSTPAKGTLIEI 806 G ++S P +G+ + Sbjct: 654 GDITVYSDPGRGSCFSL 670 >gi|220925264|ref|YP_002500566.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219949871|gb|ACL60263.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 713 Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 88/253 (34%), Positives = 135/253 (53%), Gaps = 7/253 (2%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +I+E + L A+ AE S KS FLA VSHE RTPL I+G ++++ + PL Sbjct: 177 REITERIEAVRSLDEARSRAEAASVAKSRFLATVSHEFRTPLNGILGMADLVLDT---PL 233 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 +P Y + SG +L +++ +LD SKIE+G+++L EP V + L+ Sbjct: 234 -SPEQETYIRAVKTSGEALLSLIDGILDFSKIEAGRLDLAAEPFDPAGLVESVVELLAPR 292 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A +K + I A ++P +++ D V+QI LN+ NA+ FT SGG + T + E+ Sbjct: 293 AQDKGLEIAADLAEDLPLQVVGDSDRVRQILLNLAGNAVKFTESGG--VGVTAERAGAEI 350 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 L VRDTG G+ L + F Q S R EGTGLGL + + +VD G+ + S Sbjct: 351 ALTVRDTGPGIPEERLPLLFEEFEQGDGSASRRHEGTGLGLAITRRLVDRMGGRIEVTSR 410 Query: 798 PAKGTLIEIIFPL 810 P +G+ ++ PL Sbjct: 411 PDEGSCFRVVLPL 423 >gi|254445464|ref|ZP_05058940.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198259772|gb|EDY84080.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 1321 Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 121/391 (30%), Positives = 196/391 (50%), Gaps = 37/391 (9%) Query: 440 TRINKRKMEIEVM---QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-K 495 T + + KME E + Q ++ + SD I I+ +G LS N+A L GY ED Sbjct: 799 TEVIREKMEHEALLEIQHRQLVNSASDFIFTIDFQGRFLSYNKAGEDLTGYSSEDFKAID 858 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----S 551 +T+ E++ V N L R+++ I+L K +LR + F S Sbjct: 859 IYTIMDERHCLLVKNL-------LRRRRSIPNISLEMQIRRKDGTLRWVEVSAGFIRNES 911 Query: 552 SCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-- 607 S +HDI K+ + L+ AK+ AE+ + KS FLA +SHE+RTP+ IIG + Sbjct: 912 EAVSAFGVIHDIEVRKKTEQNLTRAKEAAEENTRAKSAFLATMSHELRTPMNGIIGMTGL 971 Query: 608 ----EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 E+ ++ R + I S +L ++ND+LD+SK E+GK+ P + Sbjct: 972 LLELELTRDAR----------NFGETIRDSAASLLVLLNDILDLSKAEAGKLTFDPHPFN 1021 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG 722 L +AV++ ++L++ AN K + + + +P +L D ++Q+ LN++ NAI FT SG Sbjct: 1022 LRDAVNQTVTLLETTANSKNLELLSEIPEKLPDSLLGDAGRLRQVLLNLIGNAIKFTESG 1081 Query: 723 G-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 ++ +S NE+ I R + DTG+G++ K + F Q NS R GTGLGL Sbjct: 1082 HVKVSVSKISDDNEKEIYRFQIMDTGIGISEKAKPKLFQSFEQADNSLARRFGGTGLGLK 1141 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 ++K +V G+ + ST +G+ PL Sbjct: 1142 ISKEIVTLMGGEIGMESTEGEGSTFWFTLPL 1172 >gi|20090591|ref|NP_616666.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19915625|gb|AAM05146.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 742 Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 88/254 (34%), Positives = 136/254 (53%), Gaps = 3/254 (1%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ K+ KL K+IAE + KS+FLA +SHE+RTPL +IIGFS+++ Q FG Sbjct: 473 TFRDIT-GKKAVEKLIQEKQIAEIANRTKSEFLANISHELRTPLNSIIGFSDLLCEQIFG 531 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L N + + YA I +SG +L ++ND+LD+SK+E+GKM L + L ++ +L+ Sbjct: 532 EL-NEKQLRYAGNISKSGKHLLSLINDILDLSKVEAGKMELDYTEFELAGKLNTIKNLLA 590 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A+ K I I + + + AD QI N++ NAI F + + ++ Sbjct: 591 PIADRKSIQIEIEVDSRLTNLYADEAKFAQIMYNLVDNAIKFASENSPVNVG-ARMKGDK 649 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V + V D G G+ + K KPF Q+ + +GTGLGL L K +V + G + S Sbjct: 650 VEITVTDIGAGIKPEDQHKLFKPFSQVDYFASKQHQGTGLGLYLVKQIVQMHRGYVWFRS 709 Query: 797 TPAKGTLIEIIFPL 810 P +G+ P+ Sbjct: 710 VPGEGSTFAFAIPI 723 >gi|296188236|ref|ZP_06856628.1| PAS domain S-box domain-containing protein [Clostridium carboxidivorans P7] gi|296047362|gb|EFG86804.1| PAS domain S-box domain-containing protein [Clostridium carboxidivorans P7] Length = 859 Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 107/364 (29%), Positives = 183/364 (50%), Gaps = 12/364 (3%) Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 + D +I + +G L + ++K+ + +D+L K F F+ + + + +L Sbjct: 380 SDDIFSIFDYDGKFLQVSAGMNKILEWSEKDVLYKNFKDFVHLDDIQGCVNDFSYMLKCG 439 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 R + + K + + K +S YS+ DI++ + +++L AK AE+ Sbjct: 440 -RHIFKNRYICKNGTYKWIEWNSFVIK-EYSLIYSIG-RDITKRMESEDELKKAKIAAEE 496 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 + KS FLA +SHEIRTP+ I+G +++ L N + EY N + S + +LDI Sbjct: 497 ANIEKSRFLANMSHEIRTPINGIMGMTDL---TLMTELTNEQR-EYLNMVKASSSHLLDI 552 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--IL 698 +ND+LDISKIESGK L P +L+E +S+ + + + A +K I + NI I+ Sbjct: 553 INDILDISKIESGKFKLDLVPFNLEERISKMVKNISVLAYKKFIEVMYFIDPNISEGNII 612 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTGVGMTNYELEK 755 D + QI +N+LSNAI FT G I+ + ++ I V DTG+G+ +++K Sbjct: 613 GDPSKLDQILMNLLSNAIKFTDRGNIIVCAKKVEGPKDKIKIQFSVSDTGIGIPEDKMDK 672 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 K F QI +S + GTGLGL ++K +V+ G ++ S +G+ + + Sbjct: 673 LFKTFSQIDDSYTKKYGGTGLGLSISKHLVNMMNGDIWVTSKHNEGSCFYFTAEFFPDEN 732 Query: 816 PHDC 819 C Sbjct: 733 SSKC 736 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 72/141 (51%), Gaps = 6/141 (4%) Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 ++ R+ K + + +QL SI +A+ D I +G I+S N+A ++FGY +++L K F Sbjct: 113 INYRLQKDEYTKKALQLASIADASEDAIIGKTLDGKIISWNKAAERIFGYSEQELLGKKF 172 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFSS-CYS 555 ++ L+ N N L +S + + E + E LS+ I +K + C S Sbjct: 173 SI-LDNNEN---NKVLCSTISKNGIKDYEIEMINRNNEVIYLSISISPVKNYSGDTVCES 228 Query: 556 LTMHDISEWKQEKNKLSHAKK 576 + DI+E K+ +L +++K Sbjct: 229 VIARDITENKKLHKELYNSEK 249 >gi|78486517|ref|YP_392442.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena XCL-2] gi|78364803|gb|ABB42768.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena XCL-2] Length = 1410 Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 110/381 (28%), Positives = 186/381 (48%), Gaps = 38/381 (9%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 QL ++++ I + N +G ILS NR K + +++ T F + P Sbjct: 794 QLQGLIDSIPLMIMVTNHQGKILSANRQTLKNYQLNFQELSELNSTTFY--SDPD----- 846 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLR--------IIIKKLPFS-----SCYSLTMH 559 D +Q L + G +K++S++ +++ LP + S+ + Sbjct: 847 -------DRQQILNALQAGEQIHQKIISMKDADGIPRKMMLSVLPIHFNQQPANLSIAI- 898 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E Q + +L AK+ AE S KS FLA +SHEIRTP+ AIIGF+E++ Q + Sbjct: 899 DLTERIQFEKELQQAKEQAESASQTKSQFLANMSHEIRTPMNAIIGFTELLNEQ----VT 954 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 PR Y I +G +L ++ND+LD+SKIE+GKM+L + V+ E + + Sbjct: 955 EPRLKRYIRTIQAAGKTLLTLINDILDLSKIEAGKMDLDKKAVNPHSLFDEIGQIFMINI 1014 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-GQIIISTT----HTS 733 K + +P +L D ++QI N+L NA+ FT G ++ +S H S Sbjct: 1015 QRKGLDFLVDIDKTLPEGLLLDGVRLRQILFNLLGNAVKFTEQGYVKLKVSACDVDEHHS 1074 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +++++V DTG+G+ + + F Q N + GTGLGL + + +V+ G + Sbjct: 1075 KLDILIQVSDTGIGIPEDQQARIFNAFEQRENQDVQKFGGTGLGLAITQRLVNMMGGDIW 1134 Query: 794 IFSTPAKGTLIEIIFPLYDTS 814 + STP +GT ++ D S Sbjct: 1135 VESTPGQGTTFNLLIHHVDIS 1155 >gi|149187193|ref|ZP_01865491.1| RscS; sensor kinase protein [Vibrio shilonii AK1] gi|148838729|gb|EDL55668.1| RscS; sensor kinase protein [Vibrio shilonii AK1] Length = 934 Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 119/382 (31%), Positives = 190/382 (49%), Gaps = 27/382 (7%) Query: 438 VDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILR 494 V+ ++NK + E E QL ++E SD I I NR+G+ N A KL GY + E I + Sbjct: 262 VEAKLNKELLDNEKERSQLAMVVEHASDAIVITNRDGLTTWVNSAFEKLSGYQLTETIGK 321 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554 KP + +T +++ LS T++ L K+ + + I+I P + + Sbjct: 322 KPGDLLQGIDTSKEEIKRISDELSQG--HTVQSELLNYHKDGRPYWIDIVIT--PIRNIH 377 Query: 555 S------LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 + D S+ KQ + L A ++A+ + KS FLA +SHE+RTPL I+G ++ Sbjct: 378 NQIEQFIAVERDSSDRKQLEQNLQQAVQVADASNRAKSTFLATMSHELRTPLNGILGMAQ 437 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++++ + ++ E + + SGN +L ++ND+LDISKIE GK+ L ++DE Sbjct: 438 ILES----SVTQAQHKEQLSVLLESGNHLLSLLNDILDISKIEEGKLELEDIDFAIDELC 493 Query: 669 SEAISLVQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQI 725 S IS NEK I + N +P D ++Q+ N+L NA+ FT G Sbjct: 494 SPIISTYSAICNEKGIQFK--LNNQLPSGKSFRGDKSRIRQLIFNLLGNAVKFTERGSVE 551 Query: 726 II-----STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 ++ S+ S E++ + V DTGVG+ N L PF Q S + GTGLGL + Sbjct: 552 LVFSNSQSSMSKSKEQLNIDVIDTGVGIPNDRLATIFDPFTQAEASTTRQFGGTGLGLAI 611 Query: 781 AKAMVDANMGKFYIFSTPAKGT 802 K + + G Y+ S KG+ Sbjct: 612 VKKLSNLMGGDAYVSSELGKGS 633 >gi|114800173|ref|YP_759993.1| sensory box sensor histidine kinase/response regulator [Hyphomonas neptunium ATCC 15444] gi|114740347|gb|ABI78472.1| sensory box sensor histidine kinase/response regulator [Hyphomonas neptunium ATCC 15444] Length = 655 Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 111/368 (30%), Positives = 184/368 (50%), Gaps = 27/368 (7%) Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKP----FTVFLEQNTPSVMNHYLTEILSL 519 GI + +RE I N A+ +L GY E++L K F V Q ++ N ++EI S Sbjct: 142 GIVVTDRESRIHYVNHAICELIGYSEEELLGKDVGILFGVKAFQPQKALGNQVVSEIESG 201 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---------CYSLTMHDISEWKQEKNK 570 L + I+ + +R+ + SS + + D+ E +++ ++ Sbjct: 202 KL---IRHISDAEAYTRDGVKIRV---QASTSSTHWGEDDDMVFITYIRDVREERRKAHE 255 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A AE+ + KS+FLA +SHEIRTPL ++G ++V+ + + E I Sbjct: 256 LRDALNRAEQATRLKSEFLANMSHEIRTPLNGVLGMAQVLAHGKL----TEAQAEQVGVI 311 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SGN ++ ++ND+LD+SKIE+G+M+L P L +S L + ANEK I IR Sbjct: 312 LDSGNTLMVLLNDILDLSKIEAGRMDLSPVPGDLRHKLSGLFKLHEAAANEKGIGIRLFV 371 Query: 691 ANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---HTSNEEVILRVRDTGV 746 ++P R+L D V+Q N+LSNAI FT G +++ T+ + VI+ V DTGV Sbjct: 372 DPSVPSRLLFDPVRVRQCVSNLLSNAIKFTSQGEVMLVVTSEPVQSGAHRVIMHVSDTGV 431 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ ++++ + F Q S + GTGLGL + + + G S KG++ + Sbjct: 432 GIAADKVDRIFESFAQEDGSTTRKFGGTGLGLSITRRLARMMGGDVTAVSQVGKGSIFTL 491 Query: 807 IFPLYDTS 814 F + ++ Sbjct: 492 KFIAHSSA 499 >gi|307155071|ref|YP_003890455.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306985299|gb|ADN17180.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1200 Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 89/259 (34%), Positives = 144/259 (55%), Gaps = 10/259 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI+ KQ + +L AK+ AE + KS F+A +SHEIRTP+ AI+GF E++ N Sbjct: 687 TITDITAKKQAEEELKAAKEAAEIANRIKSQFIANISHEIRTPMNAILGFCELLLNIH-- 744 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 +PR + Y I SG +L ++ND+LD+SKIE+GK+ L++EP++L E + + + Sbjct: 745 --NDPRTLSYIQSISSSGRTLLALINDILDLSKIEAGKLELNYEPINLRELIIDVCQIFS 802 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG--GQIIISTTHTS 733 A K++ + T F N+P ++ D ++QI NI+ NA+ FT G + S + Sbjct: 803 TQAQTKKLQLLTEFEPNVPHVINFDEVRLRQILFNIIGNALKFTEKGYVKVTVFSENLAT 862 Query: 734 NEEVI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 N I + V DTG+G+ + ++ F Q + GTGLGL + K + + G Sbjct: 863 NNNYIQLKISVEDTGIGIATGQQDRIFDMFTQSEGQSTRKYGGTGLGLSITKRLTEMLGG 922 Query: 791 KFYIFSTPAKGTLIEIIFP 809 + + S KG++ +IFP Sbjct: 923 QIILQSELGKGSIFTLIFP 941 >gi|21229203|ref|NP_635125.1| two component system histidine kinase [Methanosarcina mazei Go1] gi|20907772|gb|AAM32797.1| Two component system histidine kinase [Methanosarcina mazei Go1] Length = 715 Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 87/254 (34%), Positives = 141/254 (55%), Gaps = 3/254 (1%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T D++E ++E +L H K+IAE + KS+FLA +SHE+RTPL +IIGFS+++ + +G Sbjct: 460 TCRDVTE-RKEAERLLHEKQIAEIANRTKSEFLANMSHELRTPLNSIIGFSDLLYEKVYG 518 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L N + I RSG +L+++ND+LD+SK+E+GKM L ++ L ++ SL+ Sbjct: 519 EL-NEKQARAVGNISRSGKHLLNLINDILDLSKVEAGKMELDYKEFELAGKLNAIKSLLS 577 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A+ K I I + I AD QI N++ NAI F+ G + + + Sbjct: 578 PIADRKNIEIDIEVDKGLTHIRADEARFVQIMYNLMDNAIKFSHENGLVKVRAER-KGDL 636 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V + V+D G+G+ + K KPF Q+ + +GTGLGL L K +V+ + G+ + S Sbjct: 637 VEITVKDKGIGIKEEDQCKLFKPFSQVDSFSSKTFQGTGLGLSLVKQIVNLHGGEVWFNS 696 Query: 797 TPAKGTLIEIIFPL 810 +G+ P+ Sbjct: 697 KIGEGSTFAFTVPI 710 >gi|302381789|ref|YP_003817612.1| multi-sensor signal transduction histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302192417|gb|ADK99988.1| multi-sensor signal transduction histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 643 Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 106/366 (28%), Positives = 182/366 (49%), Gaps = 39/366 (10%) Query: 457 ILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++E D GI ++ EG ++S N ++ G+ ++IL + F+ F + L E Sbjct: 285 VIEGVRDYGIFALDLEGRVVSWNTGAERIKGWTADEILGQHFSTFYPAEARAETPMRLLE 344 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL----PFSSCYSLTMHDISEWKQEKNKL 571 D R E + ++ ++I L + +S D++E +Q + L Sbjct: 345 AARRDGRVEDEGWRV--RRDGGRFWANVVITALHDETGTLTGFSKVTRDVTERRQAEEAL 402 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK--------NQRFGPLGNPRY 623 HA+ AE+ S KSDFL+R+SHE+RTPLTAI+GF++++ +QR G Sbjct: 403 GHARAEAERASRAKSDFLSRMSHELRTPLTAILGFNQLLGMDGETLTDDQRHG------- 455 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA--VSEAISLVQLYANE 681 + I R+G +L ++ ++LDI++IE+G L PV LD A +++ L+ A Sbjct: 456 ---VDQISRAGGHLLAMIEEVLDIARIEAGGHAL--APVPLDPAPLLADVRDLIAPQAQA 510 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + +R + +LAD R+ QI LN+LSNAI + P+GG + ++ S V + V Sbjct: 511 AGVEVRIEGDAGLS-VLADRRATVQIVLNLLSNAIKYGPAGGVVTVTLVGASG-RVRIEV 568 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF--------Y 793 RD G G+ +++ PF ++ + +G+GLGL L++ + A G+ + Sbjct: 569 RDEGPGVPPELVDRLFIPFDRLDAERWSGAQGSGLGLALSRGLARAQGGEVSYHPPGATF 628 Query: 794 IFSTPA 799 I PA Sbjct: 629 ILELPA 634 >gi|163842855|ref|YP_001627259.1| integral membrane sensor signal transduction histidine kinase [Brucella suis ATCC 23445] gi|163673578|gb|ABY37689.1| integral membrane sensor signal transduction histidine kinase [Brucella suis ATCC 23445] Length = 609 Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 84/245 (34%), Positives = 139/245 (56%), Gaps = 3/245 (1%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++++ K E E K LA VSHE+RTPL +IIGFS+++ ++ G L + R EYA Sbjct: 313 DEIAMLKAELESERIGKGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAG 372 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +SG+ +L++VN +LD S++E+G ++ + +AV +++ A +K + Sbjct: 373 LIHQSGHYLLELVNAVLDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCH 432 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---RVRDTG 745 N + ++AD R+V+QI LN+ SNA+ FT SGG + I + + V DTG Sbjct: 433 RVGNGVGELVADRRAVQQILLNLASNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTG 492 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ +L++ PF + NS EG+GLGL + K +V+ + G + S P +GT++ Sbjct: 493 IGIEPEDLQRIGTPFVRAGNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVM 552 Query: 806 IIFPL 810 I PL Sbjct: 553 IRLPL 557 >gi|157960457|ref|YP_001500491.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] gi|157845457|gb|ABV85956.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] Length = 1765 Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 141/251 (56%), Gaps = 8/251 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L+M +I+ KQ L AK A+ + KSDFLA +SHEIRTP+ AIIG S++ Sbjct: 1008 LSMANITSLKQLSVALKQAKDSADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTEL 1067 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + + Y IDR+ +L I+ND+LD SKIE+GK+++ LD + + + Sbjct: 1068 ----DAKQQNYIQKIDRASKSLLGIINDILDFSKIEAGKLDIESVDFQLDTLLEDLSDMF 1123 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTS 733 + A++KR+ + + A NIPR +L D + Q+ +N+++NAI FT G ++ IS Sbjct: 1124 SVKASDKRLELLFAVAPNIPRHLLGDPLRLSQVLINLMNNAIKFTEQGEVLLSISQLERV 1183 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 ++++LR VRD G+G+T + + K F Q S + GTGLGL ++K +V+ G+ Sbjct: 1184 EDDIVLRFSVRDNGIGLTEEQRNRLFKSFSQADTSTTRKYGGTGLGLAISKQLVELMGGE 1243 Query: 792 FYIFSTPAKGT 802 + S G+ Sbjct: 1244 IGVESQFGNGS 1254 >gi|116749638|ref|YP_846325.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116698702|gb|ABK17890.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 823 Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 83/234 (35%), Positives = 137/234 (58%), Gaps = 9/234 (3%) Query: 581 ESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 E+ H +S+F+A +SHE+RTPL +IIGFS ++ R G L + YA I+R+G +L+ Sbjct: 314 EADHLRSEFVANMSHELRTPLNSIIGFSGLLMKNRGGNL-VATDLSYAEKINRNGKHLLN 372 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699 ++ND+LD+SKIE+G+M L P +D E + +++ A+E+ + + A IP Sbjct: 373 LINDILDLSKIEAGRMELQIGPTRIDVLTKEVVDMLRPQADERNLSLTFETAGEIPMFET 432 Query: 700 DLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 D +K++ +N+L NAI FT GG ++I + H N E V D+G+G+ +LE Sbjct: 433 DGEKLKRVLINLLGNAIKFTHKGGVKVRLISQSGHRLNIE----VNDSGIGIPQDKLETI 488 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +PF Q+ +S GTGLGL + +++V+ G+ + S P +G+ + PL Sbjct: 489 FQPFRQVDSSTSREYGGTGLGLTITRSIVEMLRGEISVSSKPGEGSTFTVSLPL 542 >gi|169334578|ref|ZP_02861771.1| hypothetical protein ANASTE_00981 [Anaerofustis stercorihominis DSM 17244] gi|169259295|gb|EDS73261.1| hypothetical protein ANASTE_00981 [Anaerofustis stercorihominis DSM 17244] Length = 591 Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 98/260 (37%), Positives = 143/260 (55%), Gaps = 18/260 (6%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y M+ I E + K KL+ K +S KS+FL+R+SH++RTPL IIG S + N Sbjct: 192 YKAYMNSILEQESLKAKLNEEKS----ANSAKSEFLSRMSHDLRTPLNGIIGSSYLALND 247 Query: 614 RFGPLGNPR--YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 PR +Y N I++SG +L ++ND+LD+SKIES KM LH EP +L E + Sbjct: 248 DI-----PREEVNDYLNKINQSGKYLLSLINDVLDMSKIESDKMELHPEPYTLSEFLDTV 302 Query: 672 ISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 S+++ +E I +I ++ D QI LN+LSN++ FTP GG+I + Sbjct: 303 NSIIKEQCSENDIDFDIVCKEVDIKCVMLDRLRFNQIFLNLLSNSVKFTPKGGKIDLIIE 362 Query: 731 HTSNEEVILR----VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 H S ++ ++ VRDTG+GM+ L A +PF Q EGTGLGL + +V+ Sbjct: 363 HLSKDDDKIKKRFIVRDTGIGMSKEFLAHAFEPFTQEKAGDT--SEGTGLGLSIVYKIVE 420 Query: 787 ANMGKFYIFSTPAKGTLIEI 806 G+ YI S P KGT + + Sbjct: 421 LMNGRIYIESEPGKGTSVTV 440 >gi|17229771|ref|NP_486319.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17131370|dbj|BAB73978.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1299 Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 88/246 (35%), Positives = 134/246 (54%), Gaps = 13/246 (5%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + +L+ AK++AEK + KS+FLA +SHEIRTP+ AIIG S ++ + P +Y Sbjct: 608 QNEELNVAKQVAEKANMAKSNFLATMSHEIRTPMNAIIGMSGLLLDTTL----KPEQFDY 663 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I S + +L I+ND+LD SKIESGK+ L +P L V EA+ L+ A K I + Sbjct: 664 VETIRNSSHTLLTIINDILDFSKIESGKLELEEQPFDLRLCVEEALDLLAPQAASKGIEL 723 Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG--------GQIIISTTHTSNEEV 737 + P ++ D+ ++QI N++SNA+ FT G Q I T + E Sbjct: 724 MYQLEPDTPTLVVGDITRIRQILWNLVSNAVKFTKIGEICITIGAKQKIYKQTDPTRYEF 783 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V+DTG+G+ L + KPF Q+ S R GTGLGL ++K + + GK ++ S Sbjct: 784 QFAVQDTGIGIERDRLHRLFKPFSQVDASMTRRYGGTGLGLAISKRLSEIMGGKMWVESQ 843 Query: 798 PAKGTL 803 +G++ Sbjct: 844 SHQGSI 849 >gi|116624972|ref|YP_827128.1| multi-sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116228134|gb|ABJ86843.1| multi-sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 614 Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 85/248 (34%), Positives = 136/248 (54%), Gaps = 3/248 (1%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + + +L+ A + A + KS FLA VSHE+RTPL IIGFSE++ + + G L + Sbjct: 360 ELRSKNEQLARALEGARAATVAKSRFLASVSHELRTPLNGIIGFSELLYDAKLGHLSGEQ 419 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 IE I S +L ++ND+LD+SK+E+G+M E L V E +++ A K Sbjct: 420 -IEVMGDILTSARHLLQLINDILDLSKVEAGRMEFRPERSRLQPLVFEVRDVIRPLAERK 478 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 +++ T ++ L D +Q+ N LSNA+ FTP+GG + + L V Sbjct: 479 NLVLATEVPEDLVAHL-DPGRFRQVLYNYLSNAVKFTPAGGSVTVRIARERQLWFQLEVE 537 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ E+ + + F Q+PNS++ +GTGLGL L + +V+A G + S +G+ Sbjct: 538 DTGIGIAAEEIPRLFQEFSQLPNSRKA-DQGTGLGLALTRHIVEAQGGSVTVRSELGRGS 596 Query: 803 LIEIIFPL 810 + + PL Sbjct: 597 VFSALLPL 604 >gi|162210777|ref|YP_562200.2| hybrid sensory histidine kinase BarA [Shewanella denitrificans OS217] Length = 950 Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 94/246 (38%), Positives = 140/246 (56%), Gaps = 10/246 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ S KS+FLA +SHE+RTPL +IGF+ ++IK PL + ++Y Sbjct: 306 ELDLAKKRAQEASQIKSEFLANMSHELRTPLNGVIGFARQLIKT----PL-HASQLDYIK 360 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 IDRS +L I+ND+LD SK+E+GKM L P SL E V+E I+++ A K + + Sbjct: 361 TIDRSATNLLGIINDILDFSKLEAGKMELEKMPFSLRETVAETITIIAPSAQAKGLELVI 420 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDT 744 N+P + D V QI N++ NAI FT SG + + +++ V LR V DT Sbjct: 421 DIDENVPEHVSGDAMRVNQIITNLVGNAIKFTDSGSVVFKVILVAETDDRVTLRCEVIDT 480 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + E + FGQ +S R GTGLGL + K +++ G+ S+ KG+ Sbjct: 481 GIGIDDSQQEYLFQAFGQADSSISRRFGGTGLGLVITKRLINKMGGQIGFTSSSEKGSNF 540 Query: 805 EIIFPL 810 I PL Sbjct: 541 WFILPL 546 >gi|159185161|ref|NP_355290.2| two component sensor kinase/response regulator hybrid [Agrobacterium tumefaciens str. C58] gi|159140432|gb|AAK88075.2| two component sensor kinase/response regulator hybrid [Agrobacterium tumefaciens str. C58] Length = 1231 Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 90/261 (34%), Positives = 140/261 (53%), Gaps = 8/261 (3%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + + + D++E K + +L AE KS+FLA +SHEIRTP+ ++G +E++ Sbjct: 651 WLIIVTDVTEMKVREEELQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKS 710 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + + R + + I +SGN +L I+ND+LD SKIE+G+M L P EAV + +S Sbjct: 711 KL----DTRQKTFTDIIVKSGNALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVS 766 Query: 674 LVQLYANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTH 731 L+ A EK I LI A+ +++ D +QI NI+ NA+ FT +G ++ +S Sbjct: 767 LLSSAALEKDIELIVRIDASVSGKVIGDAGRFRQIVTNIVGNAVKFTETGHVLVELSAQS 826 Query: 732 TSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 E I LRV D+G+G+ +LE F Q+ S R EGTGLGL + +V Sbjct: 827 AEASESIFSLRVEDSGIGIPVDKLETIFDKFSQVDGSATRRHEGTGLGLAITVGLVGLFD 886 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 GK + S +G+ E+ P Sbjct: 887 GKINVVSEVGRGSAFEVDIPF 907 >gi|219849497|ref|YP_002463930.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543756|gb|ACL25494.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 875 Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 95/290 (32%), Positives = 151/290 (52%), Gaps = 21/290 (7%) Query: 548 LPFSSCYSLTMHDIS-------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 L F+S LT+ ++ + Q +L A + A+ KSDFLA +SHE+RTPL Sbjct: 584 LTFASMVGLTIENVQLYNELERQVAQRTEELRAALERAQLADRRKSDFLASISHELRTPL 643 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 AIIGFS V+ + PL P E I+R+G +L ++N+LLD+++IE+G +NL Sbjct: 644 NAIIGFSTVLLDDTEQPL-TPTQREDVQSINRNGRFLLHLINELLDLARIEAGHLNLELG 702 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 V L + +E VQ + + +R + +P ++AD ++QI N+LSNAI FT Sbjct: 703 SVDLCQVTAEVCDTVQTLLRNRPVTLRNALPMVLPDVVADSDRLRQILFNLLSNAIKFTE 762 Query: 721 SGGQIIISTT--HTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 G I +S NE+ V + V DTG+G+ + + F QI + ++ R Sbjct: 763 R-GTITVSAQVLDEVNEDGKLCRYVAVSVSDTGIGIPHERQQDIFGEFVQI-HGRRSRLG 820 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD---TSHPHDC 819 GTGLGL + + +V+A G+ ++ S P G+ P+ T+ P + Sbjct: 821 GTGLGLAITRKLVEAQGGRIWVDSIPGIGSTFTFTLPVAQPAFTTEPDEA 870 >gi|218246123|ref|YP_002371494.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] gi|218166601|gb|ACK65338.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] Length = 1090 Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 104/387 (26%), Positives = 185/387 (47%), Gaps = 40/387 (10%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 + IL+ ++ I I+ + I N A K FGY ++L +PF + Y Sbjct: 457 RFAGILDNANEAIISIDEQQQITLFNHAAEKTFGYQAVNVLGQPFNQLIPPRFQDSHYQY 516 Query: 513 LTEI---LSLDLRQTLEKITLGSTKE--EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567 + + L + + G ++ E L + I +L ++ + DI+E +Q Sbjct: 517 VEDFSTCLETSRQMVGRRPVFGRRQDGSEFLAEVSISKIQLKGRKLFTAIVRDITERQQA 576 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + L AK+ A+ + KS+FLA +SHE+RTPL AI+GF++V++ R NP + + Sbjct: 577 EEALKQAKEAADAANRAKSEFLASMSHELRTPLNAILGFTQVMRRDR---TLNPEHQQNL 633 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + I RSG +L+++ND+L++SKIE+G+ H L + +++ L A EK + + Sbjct: 634 SIISRSGEHLLELINDILEMSKIEAGRTTFHSNSFDLYRLLDNLEAMLHLKAQEKGLQLI 693 Query: 688 TSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-------------------- 726 +P+ L D ++Q+ +N+L NAI FT GG + Sbjct: 694 FERTPEVPQYLETDEGKLRQVLINLLGNAIKFTEEGGVTLRVKSEVRSRKGGFRESATLR 753 Query: 727 --------ISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 ++ +E++++ V D+G G+ E+++ FGQ +Q + EGTGL Sbjct: 754 TIDLEKPALTPIIADSEQIVITFEVEDSGPGIAPEEVDQLFAAFGQTETGRQAQ-EGTGL 812 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTL 803 GLP+++ V G + S +G+L Sbjct: 813 GLPISRKFVQLMGGNISVSSILGQGSL 839 >gi|254470855|ref|ZP_05084258.1| alkaline phosphatase synthesis sensor protein phor [Pseudovibrio sp. JE062] gi|211959997|gb|EEA95194.1| alkaline phosphatase synthesis sensor protein phor [Pseudovibrio sp. JE062] Length = 817 Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 88/249 (35%), Positives = 141/249 (56%), Gaps = 15/249 (6%) Query: 573 HAKKIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 HA A +E+ K+ F+ VS+E+R+PLT IIGF++++ + +FG L +P+ EY +YI Sbjct: 572 HATNDALQEADQLKNAFIQHVSYELRSPLTTIIGFAQLLGDAKFGDL-SPKQEEYTDYIL 630 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 S + +L I+ND+LD++ +++G M L V + + VSEA+ ++ E I +RT Sbjct: 631 SSSSALLHIINDILDLATVDAGIMELEISEVDVAQTVSEAVEGLKDRLVESDITLRTHMP 690 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 ++I + AD R ++Q+ N+LSNAI ++ GG + IS N E+ R++D G G+ Sbjct: 691 DDIGILKADERRLRQVLFNLLSNAIRYSDKGGLVDISCQREEN-EIRFRIKDHGAGIPQE 749 Query: 752 ELEKAMKPF---GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 LE+ F G N Q G GLGL + K+ V+ + G I S +GT ++ F Sbjct: 750 MLEQVFSRFVGRGAGGNRQ-----GVGLGLSIVKSFVELHGGTVDITSEEGQGTTVDCTF 804 Query: 809 PLYDTSHPH 817 PL PH Sbjct: 805 PL----EPH 809 >gi|157374424|ref|YP_001473024.1| hybrid sensory histidine kinase BarA [Shewanella sediminis HAW-EB3] gi|157316798|gb|ABV35896.1| Histidine kinase [Shewanella sediminis HAW-EB3] Length = 937 Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 94/252 (37%), Positives = 145/252 (57%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A + S KS+FLA +SHE+RTPL +IGF+ +++K PL + + +Y N Sbjct: 287 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKT----PLHSSQQ-DYIN 341 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S +L I+ND+LD SK+E+GKM L P +L E + + I+L+ A EK I + Sbjct: 342 TIEKSATTLLGIINDILDFSKLEAGKMVLENMPFALREMLDDTITLLSNSAREKDIELVV 401 Query: 689 SFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDT 744 +++P L+ D + QI N++ NAI FT G + + T ++NE+V LR V DT Sbjct: 402 DIESDVPEDLSGDAMRISQIMTNLVGNAIKFTDQGSVHLKLQLTESNNEQVHLRCEVTDT 461 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + E + FGQ +S R GTGLGL + K +V+ G+ S KG+ Sbjct: 462 GIGIDDSQKEVLFQAFGQADSSISRRFGGTGLGLIITKRLVNRMGGQIGCISKLDKGSTF 521 Query: 805 EIIFPLYDTSHP 816 PL + +P Sbjct: 522 WFTLPLQTSQYP 533 >gi|156743113|ref|YP_001433242.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156234441|gb|ABU59224.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 911 Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 110/387 (28%), Positives = 195/387 (50%), Gaps = 38/387 (9%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +++ E V Q +IL++ SDG+ + ++ G +L+ N A K+ P+E+++ T LE Sbjct: 540 QQRQEQAVSQSTAILQSLSDGVIVCDQSGSVLTANLAAEKILERPIEELV----TWNLED 595 Query: 504 NTPSVMNHYLTEILSLD--LRQTLEKI----TLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 ++ + E LSL+ LR + TL +T + ++ I + P S Sbjct: 596 LLRRLLGRRVDE-LSLNDLLRNPWDDQHRPRTLSTTFQIGPRTINITLD--PVISSKETL 652 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + ++ ++ + E ES K++F+ VSHE+RTP+T+I GF++++ G Sbjct: 653 IGAVAVFR---------DRTREVESDRLKTEFIGTVSHELRTPMTSIKGFTQLLAMGGLG 703 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL N E+ I + ++ I+NDLLDI+KIE+G + L P+ + E +S + +Q Sbjct: 704 PL-NETQKEFLGIIQSNAERMIAIINDLLDITKIETGSVELEIRPLHVAETLSTVMLDLQ 762 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--- 733 +++ + S +P + AD R QI NI+SNA+ +TP GG I + + Sbjct: 763 PKIQDRQQHLSLSIPAGLPLVRADARRFNQILFNIVSNAVKYTPRGGSITVEAREVTADA 822 Query: 734 --NEE---------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 +EE V + VRDTGVG+ +L + + F + N ++ GTGLGL L K Sbjct: 823 VPDEERDGLRPGRYVQIDVRDTGVGIAPEDLPRIWERFYRTENPLKVEAGGTGLGLSLVK 882 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ G+ ++ S +G++ + P Sbjct: 883 PLIRLLGGRIWVESCINEGSVFSFVIP 909 >gi|298675067|ref|YP_003726817.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288055|gb|ADI74021.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 1104 Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 107/368 (29%), Positives = 186/368 (50%), Gaps = 17/368 (4%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI-LRKPFTVFL-EQNTPSVM-NHY 512 +I E T AI + L NR KL GY E+I RK +T F+ E++ P + N+Y Sbjct: 735 TIFETTGSATAIADENSTFLLVNREFEKLSGYSKEEIEKRKNWTDFIVEEDLPYLRENYY 794 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN--- 569 S + + E + +K +S+ + +P T+ DI+E KQ + Sbjct: 795 KLLANSTSVPRKYEFRFIDRNNNQKYISM--AVNSIPERKIAIATLLDITERKQSEETLR 852 Query: 570 ----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 KLS + + K +F++ +SHE+RTP+T+I GFSE+I N++ G L N + E Sbjct: 853 IYSEKLSKTNEELRELDKMKDEFISNLSHELRTPITSIKGFSELIYNEKLGTL-NEKQKE 911 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + I +S + + ++ LL ++K+++ K+ FEPV ++ + +S + L EK I Sbjct: 912 GMDSIVKSCDRLRWLIESLLYVNKLQTEKIQYKFEPVDVETLIDGVVSNLSLQIKEKEIS 971 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRV 741 I N+P + D ++Q+ ++++ NA FT SGG+I I + +++ V + V Sbjct: 972 IEKYVDENLPYVNGDKDYLRQVLVHLMDNARKFTSSGGKIQIHAFNDADKSMDNFVHIIV 1031 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +D G+G+ + K F QI S + EGTGLG+ L +++ + G ++ S G Sbjct: 1032 KDNGIGIKKESIPDIFKLFYQIDGSMTRKYEGTGLGMYLCNKIIETHNGYIWVDSEENAG 1091 Query: 802 TLIEIIFP 809 T + + P Sbjct: 1092 TDVHVKLP 1099 >gi|91714551|gb|ABE54477.1| Hpt sensor hybrid histidine kinase [Shewanella denitrificans OS217] Length = 972 Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 94/246 (38%), Positives = 140/246 (56%), Gaps = 10/246 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ S KS+FLA +SHE+RTPL +IGF+ ++IK PL + ++Y Sbjct: 328 ELDLAKKRAQEASQIKSEFLANMSHELRTPLNGVIGFARQLIKT----PL-HASQLDYIK 382 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 IDRS +L I+ND+LD SK+E+GKM L P SL E V+E I+++ A K + + Sbjct: 383 TIDRSATNLLGIINDILDFSKLEAGKMELEKMPFSLRETVAETITIIAPSAQAKGLELVI 442 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDT 744 N+P + D V QI N++ NAI FT SG + + +++ V LR V DT Sbjct: 443 DIDENVPEHVSGDAMRVNQIITNLVGNAIKFTDSGSVVFKVILVAETDDRVTLRCEVIDT 502 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + E + FGQ +S R GTGLGL + K +++ G+ S+ KG+ Sbjct: 503 GIGIDDSQQEYLFQAFGQADSSISRRFGGTGLGLVITKRLINKMGGQIGFTSSSEKGSNF 562 Query: 805 EIIFPL 810 I PL Sbjct: 563 WFILPL 568 >gi|307293713|ref|ZP_07573557.1| integral membrane sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] gi|306879864|gb|EFN11081.1| integral membrane sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] Length = 764 Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 88/276 (31%), Positives = 157/276 (56%), Gaps = 10/276 (3%) Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 L ++ L +L + + ++E ++L AK AE ++ KSDFLA +SHE+RTPL Sbjct: 261 LGAVVTALETFRLQALEAQRVRQMEEESHRLQLAKSAAESANNAKSDFLANMSHELRTPL 320 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 AI+G++++++ P + R A ID SG+ +L +++D+LD+SKIE+GK + Sbjct: 321 NAILGYAQLLRRD---PKLDERQSNAARIIDESGSHLLTLIDDILDLSKIEAGKFEICPA 377 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFT 719 + L S ++++ A EK + + ++P +L D + ++Q+ +N+L NAI FT Sbjct: 378 ALDLRGFASGIADIIRIRAEEKALAFSCEVSPDLPIMMLVDAKRLRQVLINLLGNAIKFT 437 Query: 720 PSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 G + +S T S+ E +R VRDTGVG++ +++ +PF Q+ + Q+ R GTGL Sbjct: 438 DRGHVGLQVSLTSRSDTEARVRFEVRDTGVGISADKIDAIFQPFEQVGDVQR-RAGGTGL 496 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGT--LIEIIFPL 810 GL +++ +V +F + S +G+ E+ P+ Sbjct: 497 GLSISRQLVRLMGSEFEVMSESGRGSQFAFELTLPI 532 >gi|295134137|ref|YP_003584813.1| two-component system sensor histidine kinase/response regulator hybrid [Zunongwangia profunda SM-A87] gi|294982152|gb|ADF52617.1| two-component system sensor histidine kinase/response regulator hybrid [Zunongwangia profunda SM-A87] Length = 1567 Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 110/380 (28%), Positives = 192/380 (50%), Gaps = 15/380 (3%) Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVE 490 G + + D +I +RK++ ++ S+ E + GI +I+ E G + N+++ GY E Sbjct: 785 GTQSDITDRKIAERKIKENEVRFRSLYELSPIGIGLIDVENGTFIEANQSLITSSGYTKE 844 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL---GSTKEEKLLSLRIIIKK 547 + + + + +++ +++ + + EK + G+T + +I K Sbjct: 845 EFTGISYRKIVPKEFIPLVSDKFKKVVLNEKVEAFEKSFIKKDGTTFPALVNGAKI--KD 902 Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 T+ DI+ K+ +N L AK AE S KS+FLA +SHEIRTPL +IGF+ Sbjct: 903 TNGKDIILATIQDITRRKEMENSLVEAKLKAEAASKSKSEFLANMSHEIRTPLNGVIGFT 962 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 +++ N +Y + S N +LD++ND+LD SKIE+GK+ L E +++ E Sbjct: 963 DLLMKTEL----NTSQKQYMETVYNSANTLLDLINDILDFSKIEAGKLELSVEKINIIEL 1018 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QI 725 + I +V+ A+EK + + + + + R I D ++QI N+L NA+ FT G ++ Sbjct: 1019 CGQTIDVVKHKAHEKGLEVLLNISQKVDRYIYGDSVRIRQILTNLLGNAVKFTNKGEIEL 1078 Query: 726 IISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 I + + E E VRDTG+G+ LE+ K F Q +S + GTGLGL ++ Sbjct: 1079 RIEAGNKNTEHQREYTFIVRDTGIGIAPQNLERIFKAFDQEDSSTTRKYGGTGLGLTISN 1138 Query: 783 AMVDANMGKFYIFSTPAKGT 802 ++ K + S P G+ Sbjct: 1139 KLLYLMNSKLDVQSEPGIGS 1158 >gi|257059172|ref|YP_003137060.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] gi|256589338|gb|ACV00225.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] Length = 1090 Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 104/387 (26%), Positives = 185/387 (47%), Gaps = 40/387 (10%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 + IL+ ++ I I+ + I N A K FGY ++L +PF + Y Sbjct: 457 RFAGILDNANEAIISIDEQQQITLFNHAAEKTFGYQAVNVLGQPFNQLIPPRFQDSHYQY 516 Query: 513 LTEI---LSLDLRQTLEKITLGSTKE--EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567 + + L + + G ++ E L + I +L ++ + DI+E +Q Sbjct: 517 VEDFSTCLETSRQMVGRRPVFGRRQDGSEFLAEVSISKIQLKGRKLFTAIVRDITERQQA 576 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + L AK+ A+ + KS+FLA +SHE+RTPL AI+GF++V++ R NP + + Sbjct: 577 EEALKQAKEAADAANRAKSEFLASMSHELRTPLNAILGFTQVMRRDR---TLNPEHQQNL 633 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + I RSG +L+++ND+L++SKIE+G+ H L + +++ L A EK + + Sbjct: 634 SIISRSGEHLLELINDILEMSKIEAGRTTFHSNSFDLYRLLDNLEAMLHLKAQEKGLQLI 693 Query: 688 TSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-------------------- 726 +P+ L D ++Q+ +N+L NAI FT GG + Sbjct: 694 FERTPEVPQYLETDEGKLRQVLINLLGNAIKFTEEGGVTLRVKSEVRSRKGGFRESATLR 753 Query: 727 --------ISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 ++ +E++++ V D+G G+ E+++ FGQ +Q + EGTGL Sbjct: 754 TIDLEKPALTPIIADSEQIVITFEVEDSGPGIAPEEVDQLFAAFGQTETGRQAQ-EGTGL 812 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTL 803 GLP+++ V G + S +G+L Sbjct: 813 GLPISRKFVQLMGGNISVSSILGQGSL 839 >gi|78778121|ref|YP_394436.1| histidine kinase [Sulfurimonas denitrificans DSM 1251] gi|78498661|gb|ABB45201.1| histidine kinase [Sulfurimonas denitrificans DSM 1251] Length = 775 Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 97/275 (35%), Positives = 151/275 (54%), Gaps = 13/275 (4%) Query: 545 IKKLPFSSCYSLTMHDISEW-------KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 IKK+P+SS +H E +++++KL+ AE + K FLA +SHE+R Sbjct: 373 IKKIPYSSFIFDILHIFLEILKITLINREKEHKLTIFADKAESANRSKDMFLANMSHELR 432 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TPL AIIGFS++++ + P YIE I +GN +L++VN +LD +K+E+GK++ Sbjct: 433 TPLNAIIGFSQILQTREEIPQNMRSYIE---KISIAGNNLLNLVNTILDFAKLEAGKISY 489 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717 H L + E ++ A K I + T A+ + D + +KQ +NILSNAI Sbjct: 490 HPRMTLLSDIAKEISIIISPLAEAKNITL-TMPADISLALFIDAQLMKQSLINILSNAIK 548 Query: 718 FTPSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 FTP+ G++I S T + +L + D GVGM + + PF QI N Q +GTGL Sbjct: 549 FTPNDGEVIFSITFDKQRNQYVLSICDNGVGMDKESISQLFTPFTQIDNHLQTASKGTGL 608 Query: 777 GLPLAKAMV-DANMGKFYIFSTPAKGTLIEIIFPL 810 GL + K +V D + GK ++ S+ +G+ I P+ Sbjct: 609 GLVITKKIVEDLHGGKIWVESSVGEGSCFYIAVPI 643 >gi|17987640|ref|NP_540274.1| histidine protein kinase DIVJ [Brucella melitensis bv. 1 str. 16M] gi|17983351|gb|AAL52538.1| histidine protein kinase divj [Brucella melitensis bv. 1 str. 16M] Length = 435 Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 139/245 (56%), Gaps = 3/245 (1%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++++ K E E K LA VSHE+RTPL +IIGFS+++ ++ G L + R EYA Sbjct: 139 DEIAMLKAELESERIGKGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAG 198 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +SG+ +L++VN +LD S++E+G ++ + +AV +++ A +K + Sbjct: 199 LIHQSGHYLLELVNAVLDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVDFCH 258 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---RVRDTG 745 N + ++AD R+V+QI LN+ +NA+ FT SGG + I + + V DTG Sbjct: 259 RVGNGVGELVADRRAVQQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTG 318 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ +L++ PF + NS EG+GLGL + K +V+ + G + S P +GT++ Sbjct: 319 IGIEPEDLQRIGTPFVRAGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVM 378 Query: 806 IIFPL 810 I PL Sbjct: 379 IRLPL 383 >gi|209527419|ref|ZP_03275925.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209492154|gb|EDZ92503.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 954 Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 89/266 (33%), Positives = 148/266 (55%), Gaps = 11/266 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DISE K + KL ++ + K +FLA +SHE+RTPL I+G SE +K G L Sbjct: 546 DISERKLMEIKLQKTVAELDRATRLKDEFLANMSHELRTPLNGILGMSEALKQGILGTL- 604 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 NP I++SG +L++++D+LD+SKIE+GK+ L+ VS+ E + +++LV A Sbjct: 605 NPNQHHAIAMIEKSGKHLLELISDILDLSKIEAGKLELYLTEVSVQELCNSSLTLVNHLA 664 Query: 680 NEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIIST-------- 729 K+I I ++ + + I D R ++Q+ +N+LSNA+ FT G+I ++ Sbjct: 665 FTKQINIESNIPQQLQKTFIKVDNRRLRQVLINLLSNAVKFTHKAGKINLNVGIKPSTNL 724 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 ++ + + V D G+G+ +L+K PF QI +S + GTGLGL L K +++ + Sbjct: 725 AISTPQSIYFSVVDNGIGIATDDLDKLFLPFTQIDSSLNRQYSGTGLGLALVKQIIELHG 784 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSH 815 G + S KG+ + P +TS+ Sbjct: 785 GCVEVSSQLGKGSCFTVYLPYNETSN 810 >gi|189423631|ref|YP_001950808.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419890|gb|ACD94288.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 940 Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 91/268 (33%), Positives = 143/268 (53%), Gaps = 9/268 (3%) Query: 554 YSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 Y+L + DISE K+ + L AK+ AE S K++FLA +SHEIRTP+ II + +++ Sbjct: 533 YNLGLARDISERKKTEAVLQEAKERAEAASRAKTEFLANMSHEIRTPMNGIISMAHLLRM 592 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 EY + S +L +++D+LDISKIE+GK+ L + S+ + E + Sbjct: 593 TEL----TSEQQEYLASLQISSKNLLALISDILDISKIEAGKLELEYADFSVRATIEEVV 648 Query: 673 SLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTT 730 + +KR+ I T ++ +P IL D KQI LN+L NAI FT GG I+ + Sbjct: 649 ASQMPRITQKRLDICTELSDGLPEILLGDSLRFKQILLNLLGNAIKFTEQGGISIVAKPS 708 Query: 731 HTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + ++I+R+ DTG+GM+ LE+ PF Q +S + GTGLGL + + +V+ Sbjct: 709 ARHDNQLIMRIMIADTGIGMSPEVLERVFSPFEQADSSTTRKYGGTGLGLSICRRLVELM 768 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 G+ + S P G+ + P P Sbjct: 769 GGRIWAASRPGSGSTFFVELPFVVREAP 796 >gi|221124430|ref|XP_002164506.1| PREDICTED: similar to sensory histidine protein kinase [Hydra magnipapillata] Length = 566 Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 90/262 (34%), Positives = 144/262 (54%), Gaps = 9/262 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+++ + +L AK AE + KSDFLA +SHEIRTP+ +IG +E++ + Sbjct: 34 DVTQARHISEELQKAKDAAEAANHAKSDFLANMSHEIRTPMNGVIGMTELLLDTTL---- 89 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + EY N + S +L ++ND+LD SKIE+GKM++ P +L+ V++ + V L A Sbjct: 90 DAEQQEYLNIVKSSSEALLRVINDILDFSKIEAGKMDIESIPFNLERTVADTLKTVVLRA 149 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEV 737 ++K + + A ++PR L D ++Q+ +NIL NAI FT G ++ I SN + Sbjct: 150 HDKGLEVVWDVAPDVPRALVGDPGRLRQVLVNILGNAIKFTERGEVVLRIRQEVASNGKP 209 Query: 738 ILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +L V DTG+G+ +L F Q +S + GTGLGL + +V+ G ++ Sbjct: 210 LLHLAVSDTGIGIPANKLGSIFDAFSQEDSSTTRKYGGTGLGLTICARLVEGMGGTIWVE 269 Query: 796 STPAKGTLIEIIFPLY-DTSHP 816 STP +G++ L DTS P Sbjct: 270 STPGQGSVFHFTVALVKDTSAP 291 >gi|167645202|ref|YP_001682865.1| histidine kinase [Caulobacter sp. K31] gi|167347632|gb|ABZ70367.1| histidine kinase [Caulobacter sp. K31] Length = 287 Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 122/226 (53%) Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 K FL VSHE+RTPL A+IGFSE++ + +GPLG P+Y EYA + SG +L +VN Sbjct: 49 QKRSFLRMVSHELRTPLNAVIGFSEILSCELYGPLGAPQYKEYATLVHESGLKLLRLVNQ 108 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 +++I+++E +L LD+A+ + I ++ + I I +P + AD R Sbjct: 109 IVEIARLEGHVTDLDLGAEDLDDAIEDVILQLRAETKARDISIVAPEVGAVPCLRADGRG 168 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 ++ I N+L NAI +P GG+I+I + V + +RD G G+ EL + ++PF Q Sbjct: 169 LRTILTNLLQNAITHSPQGGRIVIEASRIDGAMVEIEIRDQGEGVDPAELNRLVRPFEQG 228 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ EG GLGLP+ + A G + ST G + P Sbjct: 229 GSTLTRSTEGAGLGLPIVDLLTRAMDGSLRLKSTQGHGFTATVALP 274 >gi|294494881|ref|YP_003541374.1| GAF sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292665880|gb|ADE35729.1| GAF sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 621 Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 88/255 (34%), Positives = 145/255 (56%), Gaps = 4/255 (1%) Query: 565 KQEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K++ NK AK + E + K++F+A +SHE+RTPL AIIGFS+++ + R+G + N + Sbjct: 370 KEKANKAFLRAKSLEEDVKTTKTEFIATMSHELRTPLNAIIGFSQLLSSNRYGNM-NEKE 428 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 ++Y+ I + G +L+++ND+LD SKI S KM L+ E ++L E E + + A +K Sbjct: 429 LKYSFSILKGGKHLLNLINDILDFSKIHSNKMELNIETINLKEICDEIKTFITPLATKKG 488 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 I + + +I L L+ + QI N+LSNA+ FTP G++ + + E V + V D Sbjct: 489 ITVEYNNKFDIDINLDKLKFI-QIMSNLLSNAVKFTPDKGKVSVDIDFVA-EYVQVSVTD 546 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G+G+ ++L PF Q +S + GTGLGL L K V+ + G ++ S KG+ Sbjct: 547 SGIGIPEHKLNMIFDPFIQADSSNTRKYGGTGLGLALVKEYVEMHGGTIWVESELGKGST 606 Query: 804 IEIIFPLYDTSHPHD 818 P+ D +D Sbjct: 607 FTFTIPVNDNDFVND 621 >gi|91773147|ref|YP_565839.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91712162|gb|ABE52089.1| pleC-like multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 507 Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 104/348 (29%), Positives = 180/348 (51%), Gaps = 6/348 (1%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF--TVFLEQNTPSVMNHYLTE 515 L+ I +I+ + I N+ L GY ++L + + V E+ SV + Sbjct: 162 LDVAGVAIIVIDNDHRISLVNKKACGLLGYKEHELLNRNWFEMVVPEEIRDSVAQTFTFS 221 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF--SSCYSLTMHDISEWKQEKNKLSH 573 L E K+ KL S + K ++ Y L DI+E KQ + L + Sbjct: 222 CSENALSTPFECAINTKEKQNKLCSWKCTQLKDENGNTNGYILAGEDITERKQVEEALLN 281 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK +AE + KS+F+A +SHE+RTPL AIIGFSE++ ++FG L N + +Y N I S Sbjct: 282 AKHMAEDANRTKSEFIANMSHELRTPLNAIIGFSEILIEKKFGDL-NDKQDKYLNNIFIS 340 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +L+I+N +L+ISKIESG + ++++ +SL + + + ++ ++ ++ N Sbjct: 341 GKKLLEIINSILEISKIESGNIEINYKTISLGDLIEDLKEDIKEKLPDQAEMVSFEILTN 400 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 I I+ D+ V++ L+++ NAI F+ + +S + +E + +V D G+G+T ++ Sbjct: 401 IENIIVDINKVEKSVLHLIENAIKFSDKTQHVEVS-LESVDEMIAFKVTDRGIGITEEDI 459 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 ++ KPF Q+ S G G+GL + K + + + G I S KG Sbjct: 460 KRLFKPFNQLDASSTRVYGGLGIGLYIIKKIAELHGGGLAIKSELEKG 507 >gi|153871118|ref|ZP_02000369.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152072417|gb|EDN69632.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 866 Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 107/358 (29%), Positives = 178/358 (49%), Gaps = 9/358 (2%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +ILE GI +I+ GII N A ++FGY +++ + + S + YL Sbjct: 204 AILETMIGGIVVIDSNGIIELFNPAAEEMFGYLAPEVIGYNVNRLMPEPYHSEHDQYLNN 263 Query: 516 ILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKL 571 L+ R+ + + + K+ + + + ++ + + DI+E K + L Sbjct: 264 YLTTSQRKIIGIGREVVAKRKDGSFFPIELAVSEMYEGNALKFVGRIIDITERKAAEFAL 323 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 AK+ AE+ + KS+FL +SHE+RTPLT ++G ++ + P + A I+ Sbjct: 324 IKAKEQAEESNRLKSEFLNVISHELRTPLTIMLGNLPLLTDPNDLP-DAEEIADIATDIE 382 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 SG +L ++NDLLD+SKIE+GKM + E +S+ + I+ +Q+ A+EK + I T Sbjct: 383 DSGQHLLTLINDLLDLSKIEAGKMTIQQELLSVAALTQDVITSIQVMAHEKNLTIETEID 442 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 + + AD +KQI LN+L NAI FT +G I +V V D G G+ Sbjct: 443 D--IEVFADPIRLKQILLNLLGNAIKFTENG--FIKVKIKPMAHQVCFFVEDCGCGIDEK 498 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ F Q +S R +GTGLGL + K +V+ + GK + S KG++ P Sbjct: 499 DVPFIFDAFRQSDSSAARRADGTGLGLAITKKLVELHNGKISVQSLLGKGSVFSFSIP 556 >gi|152993440|ref|YP_001359161.1| hypothetical protein SUN_1857 [Sulfurovum sp. NBC37-1] gi|151425301|dbj|BAF72804.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 1156 Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 119/379 (31%), Positives = 190/379 (50%), Gaps = 33/379 (8%) Query: 440 TRINKRK-MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 T I K K +I+ Q I+E DGI + EG + S N+ +LFGY +I+ K + Sbjct: 644 TDITKEKESQIKYFQQVQIMEQIHDGIVTTDLEGNVTSWNKGAEELFGYSQSEIIGKHIS 703 Query: 499 -VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS------TKEEKL----LSLRIIIKK 547 ++ +++ P + +R +LE+ L TK +K+ LSL ++ + Sbjct: 704 LIYRKKDIPGIKER---------IRASLEETGLYQGDLTFITKSKKIIPVSLSLSLLKDE 754 Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + DI++ K+++ L AK+ AE+ + KS+FLA +SHEIRTPL+AI+GF Sbjct: 755 HGNVAGRIGINQDITQRKKDEKSLLKAKRKAEESAKSKSEFLANMSHEIRTPLSAILGFI 814 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM---NLHFEPVSL 664 +++K + + EY + ID S +L I+ D+LD SKIESGK+ + F P Sbjct: 815 DLLKKENI----EKKAKEYVDIIDTSSKGLLKIIEDILDFSKIESGKLEIDKIDFSPKIE 870 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723 E + I L EK I + ++P I D +KQI N+LSNAI FT G Sbjct: 871 FETI---IHLFLAKCAEKDIALTLILDESLPETIHTDPLRIKQIISNLLSNAIKFTDQGK 927 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 +I + T + N + + V+D G G+ +L + F Q +S GTGLGL ++ Sbjct: 928 KITV-TINYKNGFLNVSVKDEGKGIAKEKLSHIFESFAQEDSSTTREYGGTGLGLTISYR 986 Query: 784 MVDANMGKFYIFSTPAKGT 802 +V G+ ++ S G+ Sbjct: 987 LVKILGGELHVKSKVGAGS 1005 >gi|218506120|ref|ZP_03503998.1| probable two-component sensor histidine kinase protein [Rhizobium etli Brasil 5] Length = 199 Score = 144 bits (363), Expect = 7e-32, Method: Composition-based stats. Identities = 78/197 (39%), Positives = 118/197 (59%), Gaps = 3/197 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA VSHE+RTPL AI+GFS+++ + FG N R EY + SG +L +VN + Sbjct: 5 KSRFLAAVSHELRTPLNAILGFSDILIGEYFGKFENDRQREYVGLVRESGAHLLSVVNTM 64 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+SKIE+G+ L E + +V S++ L A K + + + + I+AD R++ Sbjct: 65 LDMSKIEAGRYELILEAFDISASVRSCESMLALQAKTKGVTLTSRIQRGLGEIVADQRAI 124 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQI 763 +QI +N++ NA+ FT +GG ++S + + ++ L V DTG+G+ +L +PF QI Sbjct: 125 QQILINLVGNAVKFTEAGG--VVSIDAAARDGILKLTVSDTGIGIAADKLALLGQPFVQI 182 Query: 764 PNSQQIRGEGTGLGLPL 780 N R EGTGLGL L Sbjct: 183 QNDYTRRFEGTGLGLSL 199 >gi|67923164|ref|ZP_00516653.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] gi|67855006|gb|EAM50276.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] Length = 445 Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 83/248 (33%), Positives = 138/248 (55%), Gaps = 3/248 (1%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 ++++ K+ K + ++KSD+ + VSHE+RT L I+G S+++K + +GPL N + Sbjct: 190 KYQERIKKIELENKQLKSSKNNKSDYFSHVSHELRTTLAGILGLSKMLKQELYGPL-NEK 248 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 EY N I SG +L +VND LD+SKIE+ K L E V++++ IS++Q A+E+ Sbjct: 249 QKEYVNGIRVSGEHLLALVNDFLDLSKIEADKEELFLENVTVEDICLATISIIQPKADEQ 308 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 I I + + D R +KQI +N++SNAI FT G + + + V Sbjct: 309 NIDIILKVSEQVDFCTVDQRKIKQILINLMSNAIKFTEEGS--VTLQVEKVDNWLKFCVI 366 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ + +K +PF QI + + +GTGLGL L++ + + G+ + S KG+ Sbjct: 367 DTGIGIKEEDQKKLFQPFQQIHSKLSRQHKGTGLGLALSRKLAQLHEGELTLTSEYGKGS 426 Query: 803 LIEIIFPL 810 + PL Sbjct: 427 CFTLELPL 434 >gi|303246216|ref|ZP_07332496.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492279|gb|EFL52151.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 928 Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 118/403 (29%), Positives = 192/403 (47%), Gaps = 36/403 (8%) Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP--- 496 TR +R ++ + QL I+E + I++++GII+ N+A+ + E I+ K Sbjct: 127 TRQRERYLQDSIRQLTDIIEFLPEPTMIVDKDGIIVVWNKAIEDVTEVKKEAIVGKGNYE 186 Query: 497 -FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS--------------L 541 F + P +++ L D R +E+ T K E L L Sbjct: 187 YALPFYNERRPILIDWVL------DDRVPIEQYTFVQRKGEMLFGEIYTPNAFGGKGAYL 240 Query: 542 RIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + L SS + M +++E K + +L AK AE + KS+FLAR+SHEIR Sbjct: 241 WGVAAPLKDSSGNIVGAVECMRNVTERKMVEQELHRAKLAAEAATRAKSEFLARMSHEIR 300 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ +I+G SE+++ + Y + SG ++L I+ND+LD SKIE+G+++L Sbjct: 301 TPMNSILGMSELLEETSL----DFDQKNYVQTLHSSGEMLLAIINDILDFSKIEAGQVDL 356 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716 P L + V ++ L A EK + + A + R +L D ++QI +N+LSNAI Sbjct: 357 ECVPFDLIDLVEGIGRILGLKAQEKGLKLTCWVAPEVHRHVLGDPTRLQQILINLLSNAI 416 Query: 717 HFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 FT G I+ E +++ V DTG+G+ + E + F Q S + G Sbjct: 417 KFTEHGEVTLHILPGPLPADKETILVTVSDTGIGIPKDKQESVFESFSQADTSTTRKFGG 476 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 TGLGL ++K +++ G I S GT + L T+ P Sbjct: 477 TGLGLAISKKLIELMDGGIRIESNEGAGTTFLLTVRLKHTNEP 519 >gi|325103345|ref|YP_004272999.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] gi|324972193|gb|ADY51177.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] Length = 1304 Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 89/249 (35%), Positives = 144/249 (57%), Gaps = 8/249 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +ISE + +L AK A+ S KS+FLA +SHEIRTPL +IGFS+++ PL Sbjct: 653 QNISESVKVNEELKKAKTFADLASKAKSEFLANMSHEIRTPLNGVIGFSDLLLKT---PL 709 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N +Y NYI+ SGN +L I+ND+LD SKIE+GK+ L + ++ + ++ I++V Sbjct: 710 -NETQKQYLNYINESGNSLLSIINDILDFSKIEAGKLELFIDKFNIYDIANQVINIVLYQ 768 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE 736 A K + + + +P I D +KQ+ +N+L NA+ FT G ++ I + N++ Sbjct: 769 AQRKDVELLLNIEQGLPSSIWVDESRIKQVLINLLGNAVKFTEHGEIELKIEKLSSYNDK 828 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + LR VRDTG+G+ + ++ + F Q +S R GTGLGL ++ +++ K + Sbjct: 829 ITLRFSVRDTGIGIPKDKQQRIFEAFTQEDSSVSKRYGGTGLGLTISNNLLNYMKSKLQL 888 Query: 795 FSTPAKGTL 803 S P KG++ Sbjct: 889 KSEPGKGSI 897 >gi|153868900|ref|ZP_01998629.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152074529|gb|EDN71374.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 934 Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 95/249 (38%), Positives = 141/249 (56%), Gaps = 14/249 (5%) Query: 564 WKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 W +EK +L AK+IAE + KS FLA +SHE+RTPL AI+GF++++ R L Sbjct: 444 WLKEKTTQLEQAKEIAEAANQAKSLFLANMSHELRTPLNAILGFAQIM--HRSQTLSQ-E 500 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + E N I+RSG +L ++ND+LD+SKIE+GK+ L + L + E L L A K Sbjct: 501 HQENVNVINRSGEYLLSLINDVLDMSKIEAGKITLDETNIDLYRLLDEVHDLFYLRAESK 560 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG------QIIISTTHTSNE 735 ++ + NN+PR L D + ++Q+ +N+LSNA+ FT GG I + + Sbjct: 561 QLQLDIERDNNVPRYLYTDGKKLRQVLINLLSNALKFTQEGGIHLYINDITPPLSKETMT 620 Query: 736 EVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 EVIL +VRDTG G+ E++K + F Q + EGTGLGLP+++ V G Sbjct: 621 EVILEFQVRDTGPGIAENEMDKLFEAFTQTATGIASQ-EGTGLGLPISRKFVQLMGGDIS 679 Query: 794 IFSTPAKGT 802 + S +GT Sbjct: 680 VQSKVGEGT 688 >gi|46201957|ref|ZP_00208322.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 413 Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 93/243 (38%), Positives = 138/243 (56%), Gaps = 7/243 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K AE+ S KS+FLA +SHE+RTPL IIGFSE+I+++ + E A+ Sbjct: 171 RLDEARKRAEEASRMKSEFLANMSHELRTPLNGIIGFSELIRDEA----ADDETRENADI 226 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S +L++VN +LDI+KIE+G M L + V L V+EA S+ A K I + + Sbjct: 227 IEKSSRHLLELVNSILDIAKIEAGAMTLAVQDVKLAPLVAEAASVHHSAAQAKGITLSSQ 286 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 ++N P I AD ++QI N+LSNA+ FT G++ +S +I RV DTG G+ Sbjct: 287 VSDNCPETIRADPLRLRQIIHNLLSNAVKFTEK-GEVSLS-VELEPGHLIFRVSDTGAGI 344 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 L + F Q+ + GTGLGL LA+ +V+ G + ST KGT+ Sbjct: 345 PEGMLHAIFEKFRQVDSFLTRSHSGTGLGLTLARHLVELMGGTIGVQSTVGKGTVFHFTL 404 Query: 809 PLY 811 PL+ Sbjct: 405 PLH 407 >gi|303327105|ref|ZP_07357547.1| sensory box histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] gi|302863093|gb|EFL86025.1| sensory box histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] Length = 696 Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 84/232 (36%), Positives = 131/232 (56%), Gaps = 7/232 (3%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K++AE + KS+FLAR+SHEIRTP+ I+G + + + P R EY I S Sbjct: 307 KELAEAATRAKSEFLARMSHEIRTPMNGILGMTYLALDDNPAP----RQREYLRKIRLSA 362 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L I+ND+LD SKIE+GK+++ E +LDE V +++ +EK++ + A ++ Sbjct: 363 KSLLGIINDILDFSKIEAGKLDISEEDFALDELVQNLRAMLSAQVHEKQLSFSVNLARDV 422 Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VRDTGVGMTNY 751 P L D + ++ +N+L NA+ FT GG + T + V L VRDTG+G++ Sbjct: 423 PLWLRGDALRITEVLINLLGNALKFTSQGGISLDVGTDCRDGAVFLHFMVRDTGIGISAG 482 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 ELE +PF Q +S R GTGLGL +++ + GK + S P KG++ Sbjct: 483 ELENLFQPFTQADSSISRRFGGTGLGLAISRQLARLMDGKLWCESEPGKGSV 534 >gi|220924453|ref|YP_002499755.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219949060|gb|ACL59452.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 1350 Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 92/255 (36%), Positives = 142/255 (55%), Gaps = 7/255 (2%) Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 S Y ++ D+SE +Q+ L A+ AE+ S K+DFLA +SHEIRTPL I+G+++++ Sbjct: 826 SGYVASLRDVSERQQQAEALEQARDAAEQASRAKTDFLALMSHEIRTPLNGILGYTDLLL 885 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 G R A I +G +L IVND+LD SKIE+G++ L P LD V Sbjct: 886 EDATLGEGQRR---QAERIQSAGAALLTIVNDILDFSKIEAGQVELDPRPFLLDALVDNT 942 Query: 672 ISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-IST 729 IS+V+ + +K I I T ++PR L D ++Q+ LN+L+NA+ FT +G + +S Sbjct: 943 ISVVRGFVGKKAIAISTVVDPDVPRTLVGDQDRLRQVLLNLLNNAVKFTHAGSVTLSVSC 1002 Query: 730 THTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + LR V DTG+G+ + + + F Q+ +S GTGLGL ++K +V+ Sbjct: 1003 LEPAGATAALRFSVTDTGIGIPEDKRGRLFQRFSQLDSSIGRDFGGTGLGLAISKNLVEL 1062 Query: 788 NMGKFYIFSTPAKGT 802 G + S +KGT Sbjct: 1063 MGGTIDVESEVSKGT 1077 >gi|153869151|ref|ZP_01998829.1| Signal Transduction Histidine Kinase [Beggiatoa sp. PS] gi|152074304|gb|EDN71172.1| Signal Transduction Histidine Kinase [Beggiatoa sp. PS] Length = 1630 Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 90/256 (35%), Positives = 147/256 (57%), Gaps = 7/256 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E KQ + KL AK+ AE + KS FLA +SHE+RTPL I+G+++++ R L Sbjct: 1338 DITERKQAEEKLQEAKEAAEAANRAKSAFLANMSHELRTPLNGILGYAQIMG--RDSHLC 1395 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 Y E I+RSGN +L ++ND+LD+SKIE+GK+ L+ ++ + + Q+ A Sbjct: 1396 E-NYREGIGIIERSGNYLLTLINDILDLSKIEAGKIELYPTDFYFNQFIQAITEIFQMRA 1454 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +K I +++P + AD + ++QI +N+L NA+ FT GG I+ E++ Sbjct: 1455 EQKSISFNYQPLSSLPLAVHADEKRLRQILINLLGNAVKFTKQGG--IVLKVGLEKEKIR 1512 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +V DTG+G+ +L+ PF Q+ N R EGTGLGL + + +VD G+ ++ S Sbjct: 1513 FQVEDTGIGIATEDLDNIFSPFLQVGNP-NYRAEGTGLGLSITQKLVDMMGGELHVESVL 1571 Query: 799 AKGTLIEIIFPLYDTS 814 +G+ ++ L + S Sbjct: 1572 GQGSRFWMVLDLPEVS 1587 >gi|157828187|ref|YP_001494429.1| histidine kinase sensor protein [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932889|ref|YP_001649678.1| sensory transduction protein kinase [Rickettsia rickettsii str. Iowa] gi|157800668|gb|ABV75921.1| histidine kinase sensor protein [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907976|gb|ABY72272.1| sensory transduction protein kinase [Rickettsia rickettsii str. Iowa] Length = 497 Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 86/238 (36%), Positives = 139/238 (58%), Gaps = 6/238 (2%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 EK SS + F A +SHE+RTPL AIIGFSE++ ++R + Y I+ +G + Sbjct: 262 VEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSER----DEEKSKNYIKDINDAGKHL 317 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ND+LD+SK + K+ + + L++ + ++ LV+ A++ + + + I Sbjct: 318 LSMINDILDLSKASADKLKVDSIDLDLNKLIRSSLILVKPRADQAAVALISRLPKEHVVI 377 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKA 756 AD + +KQ+ LN+LSNA+ FT SGG + I+ +++ ++V DTG+G+ ++ K Sbjct: 378 KADPKRLKQVFLNLLSNAVKFTNSGGSVTIALEKDELAKLVYIKVIDTGIGIEEKDIPKT 437 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + FGQI + + EGTGLGLPL K +V+ GKF + S +GT I I F YD S Sbjct: 438 LSAFGQIDSELSRKYEGTGLGLPLTKKLVELMKGKFDLQSKINEGTTITITFT-YDGS 494 >gi|224371411|ref|YP_002605575.1| putative two-component system sensor protein [Desulfobacterium autotrophicum HRM2] gi|223694128|gb|ACN17411.1| putative two-component system sensor protein [Desulfobacterium autotrophicum HRM2] Length = 1272 Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 108/359 (30%), Positives = 184/359 (51%), Gaps = 16/359 (4%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 L SIL T++G +N I+S N + K+ ED+L + FL++ +++N Sbjct: 377 HLKSILMTTNEGFLWVNNGAHIVSVNDTMCKISSRAREDLLGRALFEFLDEENIAILNEQ 436 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLS---LRIIIKKLPFSSCYSLTMHDISEWKQEKN 569 L L + ++ +I L K++ + K + + DI+ K+ + Sbjct: 437 LR--LRNTGQTSVYEIALNRPDGSKVICEFHATPLYDKNGVKTGSFAMVSDITHRKKMEE 494 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+ AE + KSDFLA +SHEIRTP+ A++G + + P+ +Y + Sbjct: 495 ELIVARDKAEAATRAKSDFLANMSHEIRTPMNAVMGMTHLALQTDL----TPKQRDYLHK 550 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR-ILIRT 688 I S N +L ++ND+LD SKIE+GKM + +LDE + +++ + EK I + Sbjct: 551 IQISANSLLGVINDILDFSKIEAGKMGMESIDFNLDEVLENLSTMIAVKLREKEGIEVLF 610 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--NEEVILR--VRD 743 ++PR ++ D + QI +N+ +N+I FT S G+I++ST S N ++L+ VRD Sbjct: 611 DTGADVPRQLVGDPLRLSQILVNLANNSIKFTES-GEIVVSTKVVSQGNHVIVLQFSVRD 669 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TG+G+T + + F Q S R G+GLGL + + +V GK ++ S KG+ Sbjct: 670 TGIGLTEEHMVQLFTAFSQADTSITRRYGGSGLGLSICQRLVKMMGGKIWVESIYGKGS 728 >gi|229586477|ref|YP_002844978.1| Histidine kinase sensor protein [Rickettsia africae ESF-5] gi|228021527|gb|ACP53235.1| Histidine kinase sensor protein [Rickettsia africae ESF-5] Length = 497 Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 90/256 (35%), Positives = 147/256 (57%), Gaps = 7/256 (2%) Query: 561 ISEWKQEKNKLSHAKKI-AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 I E + E N+ A+ + EK SS + F +SHE+RTPL AIIGFSE++ ++R Sbjct: 244 IIEEQLETNRNLKAQIVKVEKTSSSNTKFFTNISHELRTPLNAIIGFSEILMSER----D 299 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + Y I+ +G +L ++ND+LD+SK + K+ + + L++ + ++ LV+ A Sbjct: 300 AEKSKNYIKDINDAGKHLLSMINDILDLSKASADKLKVDSIDLDLNKLIRSSLILVKTRA 359 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI- 738 ++ + + + I AD + +KQ+ LN+LSNA+ FT SGG + I+ +++ Sbjct: 360 DQAEVALISRLPKEHVVIKADPKRLKQVFLNLLSNAVKFTNSGGSVTIALEKDELAKLVY 419 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 ++V DTG+G+ ++ K + FGQI + + EGTGLGLPL K +V+ GKF + S Sbjct: 420 IKVIDTGIGIEEKDIPKTLSAFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQSKI 479 Query: 799 AKGTLIEIIFPLYDTS 814 +GT I I F YD S Sbjct: 480 NEGTTITITFT-YDCS 494 >gi|189423633|ref|YP_001950810.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419892|gb|ACD94290.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 743 Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 141/255 (55%), Gaps = 8/255 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H +S+ +Q ++L+ A+ AE + KS+FLA +SHE+RTP+ +IG +++++ Sbjct: 340 HLMSQVRQSHHQLTAARDAAESANRTKSEFLANMSHELRTPMNGVIGTAQLLRMTEL--- 396 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N EY I+ S + ++ ++ND+LD+S+IE+G++ L P L E + + + Sbjct: 397 -NAEQAEYLASIEHSADSLMALLNDILDLSRIEAGRLELENRPFGLQEVIGNVVDSLSAQ 455 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A K + + F N+P+ +L D +QI LN+ NAI FT G ++ + +++E+ Sbjct: 456 ARLKWLQLSVEFDRNLPQLVLGDSLRFRQILLNLTGNAIKFTDQGAVLVTAALSSADEDS 515 Query: 738 I---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + L V+DTG+G+T +++ PF Q +S + G+GLGL +++ + G+ + Sbjct: 516 VTLHLCVQDTGIGITAEAMQRIFAPFTQADSSNTRKYGGSGLGLTISRHLTGLMGGRLWA 575 Query: 795 FSTPAKGTLIEIIFP 809 S P GT + P Sbjct: 576 ESEPGIGTTFHLELP 590 >gi|313674518|ref|YP_004052514.1| pas/pac sensor hybrid histidine kinase [Marivirga tractuosa DSM 4126] gi|312941216|gb|ADR20406.1| PAS/PAC sensor hybrid histidine kinase [Marivirga tractuosa DSM 4126] Length = 1296 Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 106/361 (29%), Positives = 191/361 (52%), Gaps = 17/361 (4%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKL-----FGYPVEDILRKPFTVF-LEQNTP 506 QL +I+ + ++ + + +GII S N + +K+ F + ++ P + + N Sbjct: 526 QLQNIISSMNEALLFYDSKGIIRSMNDSAAKILELDKFEVVGKRLMSTPIKLLDVNGNFI 585 Query: 507 SVMNHYLTEILSLDLRQTLEKIT--LGSTKEEKLLSLRIIIKKLPFSSC-YSL-TMHDIS 562 S H + ++L+ +++L +T L +TK EK + + IK + ++L T +DIS Sbjct: 586 SAEQHPVA--IALEEKKSLNDVTVQLLNTKTEKTIWIAANIKIIEEEDAQWALVTFNDIS 643 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + + +L AKK AE + KS FLA +SHEIRTPL +IGFS++++ L Sbjct: 644 NRVKSEKQLLEAKKSAEAANQAKSTFLANMSHEIRTPLNGVIGFSDLLRKTNLNILQT-- 701 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +Y +I S + +L I+ND+LD SKIE+GK+ L E ++ E V A+S + A++K Sbjct: 702 --DYTQHIYNSAHSLLGIINDILDFSKIEAGKLKLQMEEINGLELVESAVSFITFQASQK 759 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + + + ++P AD ++QI +N+L NA+ FT SG + T +++ V Sbjct: 760 NLELLIEYDPDVPIYFEADELRLRQILINLLGNAVKFTESGNIALKVTKLHKEDKLKFEV 819 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G++ + + + F Q S + G+GLGL ++ ++ + ++ S KG Sbjct: 820 IDTGIGISAKQQKNIFRAFEQADVSTTRKFGGSGLGLTISNKLLKMMQSRLHLESEVNKG 879 Query: 802 T 802 + Sbjct: 880 S 880 >gi|325293689|ref|YP_004279553.1| two component sensor kinase/response regulator hybrid [Agrobacterium sp. H13-3] gi|325061542|gb|ADY65233.1| two component sensor kinase/response regulator hybrid [Agrobacterium sp. H13-3] Length = 1223 Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 88/270 (32%), Positives = 139/270 (51%), Gaps = 8/270 (2%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + + + D++E K + +L AE KS+FLA +SHEIRTP+ ++G +E++ Sbjct: 640 WLIIVTDVTEMKMREEELQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKS 699 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + R + + I +SGN +L I+ND+LD SKIE+G+M L P EAV + +S Sbjct: 700 NL----DTRQKTFTDIIVKSGNALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVS 755 Query: 674 LVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTH 731 L+ A EK I + ++ +++ D +Q+ N++ NA+ FT G +I +S Sbjct: 756 LLSSAALEKNIELVVRIDPSVFGKVMGDAGRFRQVVTNLVGNAVKFTEMGHVLIELSAQS 815 Query: 732 TSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 E I LRV D+G+G+ +LE F Q+ S R EGTGLGL + +V Sbjct: 816 AEASETILSLRVEDSGIGIPADKLETIFDKFSQVDGSATRRHEGTGLGLAITVGLVGLFD 875 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 G + S KG+ E+ P + T D Sbjct: 876 GTINVVSEVGKGSTFEVNIPFHVTEKRRDA 905 >gi|220908294|ref|YP_002483605.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219864905|gb|ACL45244.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 733 Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 82/232 (35%), Positives = 133/232 (57%), Gaps = 6/232 (2%) Query: 582 SSH--KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 S+H KSDFLA ++HE+RTPLT +IG S + GPL N + Y I SG +L+ Sbjct: 355 SAHRAKSDFLATINHELRTPLTCVIGMSATLLRWSLGPL-NDKQRSYLKTIHDSGEHLLE 413 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR--TSFANNIPRI 697 ++ND+LD+S++E+GK L SL++ +A+ + + A E + ++ + + R Sbjct: 414 LINDILDLSQVEAGKAVLSLSEFSLNQLCRQALRVFREKAQEAEVELKLESLIPSEFERF 473 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 AD R V+QI N+LSNAI FTP+GG++ + + N + + +V DTG+G++ + Sbjct: 474 CADQRRVRQILFNLLSNAIKFTPAGGRVTLRS-WVENGKALFQVEDTGIGISLSQQPLLF 532 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q+ S EG GLGL L K +V+ + G+ + ST G++ + P Sbjct: 533 QKFQQLDTSYTRSYEGVGLGLALTKQLVELHRGRIEVESTEGIGSIFTVELP 584 >gi|15604100|ref|NP_220615.1| histidine kinase sensor protein (barA) [Rickettsia prowazekii str. Madrid E] gi|3860792|emb|CAA14692.1| HISTIDINE KINASE SENSOR PROTEIN (barA) [Rickettsia prowazekii] gi|292571826|gb|ADE29741.1| Histidine kinase sensor protein [Rickettsia prowazekii Rp22] Length = 497 Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 87/238 (36%), Positives = 138/238 (57%), Gaps = 6/238 (2%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 EK SS + F A +SHE+RTPL AIIGFSE++ ++R + Y I +G + Sbjct: 262 VEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSER----DTEKSKNYIKDIHDAGKHL 317 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ND+LD+SK + K+ + + L++ +S ++ L++ A + + + + I Sbjct: 318 LSMINDILDLSKASADKLKVDNIDLDLNKLISSSLILIKPRAYQAEVELISRLPKEHVVI 377 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKA 756 AD + +KQ+ LN+LSNA+ FT SGG + IS +++ ++V DTG+G+ ++ K Sbjct: 378 NADPKRLKQVLLNLLSNAVKFTNSGGSVTISLEKDELAKLVYIKVIDTGIGIEEKDIPKT 437 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + FGQI + + EGTGLGLPL K +V+ GKF + S KGT + I F YD S Sbjct: 438 LSAFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQSKINKGTTVTITFK-YDGS 494 >gi|17228780|ref|NP_485328.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130632|dbj|BAB73242.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 603 Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 89/261 (34%), Positives = 141/261 (54%), Gaps = 7/261 (2%) Query: 553 CYSLTMH--DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 C +H I +Q+ L + + E+ + K+ FLA SHEIRTPL++IIGF+ ++ Sbjct: 199 CVKALVHLKKIQSLQQKSQNLGISNQELERTNQLKNQFLANTSHEIRTPLSSIIGFTHLL 258 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 Q + P R+ EY N I SG +L ++ND+LD+SKIE+ ++ + +E V++ E Sbjct: 259 LAQGYDP-TRERHHEYLNIIQSSGKHLLALINDILDLSKIEANQLEVQWEKVNVPELCQN 317 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 ++L++ A K + + NI +AD +KQ+ LN+L NA+ FT G + Sbjct: 318 VLTLIKEKAANKGVKLSLELDPNIKTFVADPLRLKQMLLNLLFNALKFTNQG---TVGLK 374 Query: 731 HTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 T + I V DTG G++ L +P+ QIPNS + EGTGLGL + + + + + Sbjct: 375 VTQQDSFIHFTVWDTGSGISPENLALLFQPYFQIPNSSVAQHEGTGLGLVVTRKLAEIHN 434 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G + S A G+ II PL Sbjct: 435 GSVEVESQVAHGSRFTIILPL 455 >gi|126658667|ref|ZP_01729813.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. CCY0110] gi|126620104|gb|EAZ90827.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. CCY0110] Length = 826 Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 99/351 (28%), Positives = 182/351 (51%), Gaps = 24/351 (6%) Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522 +GI I+N+EG I N A K+F P+ +L F + + + P Sbjct: 244 NGIIIVNQEGKIKFANPAALKIFEQPLHSLLDYEFGLPIINDKP---------------- 287 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 +E L S + ++ + I + + S Y ++ +I+ K+ + ++ AK A+ + Sbjct: 288 --VELEILKSNNQTGIVEMNITLTEWENESVYLVSFREITMRKKAEEEIIKAKLEADSAN 345 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 K++FL VSHE+RTP+ AI+GFS+++K + + +P EY + I + N++L ++N Sbjct: 346 QAKTEFLTNVSHELRTPMNAILGFSQLLKLKL--KVDDPLIYEYIDTIYNNSNILLSLIN 403 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DL 701 +LLDI++ E+GK+ L++ S+ + + E I L ++K + + +N+P+ + D Sbjct: 404 ELLDINQAEAGKIELNYCGFSVRQFLGETIKLFSSQLSKKTVNLLIDIEDNVPKFINFDS 463 Query: 702 RSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMK 758 ++QI +N++SN++ FT G +I+IS L+ V DTG+G+ + + E+ + Sbjct: 464 LRLRQILINLISNSLKFTTKGHIKILISIQELYLNSCTLKIFVEDTGIGIKDEDKERIFQ 523 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F Q R G GLGL + + + + G + S KG+ IIFP Sbjct: 524 VFTQSKGQDNYRYGGNGLGLFITQKITECLGGTITLESEWGKGSTFTIIFP 574 >gi|261218576|ref|ZP_05932857.1| integral membrane sensor signal transduction histidine kinase [Brucella ceti M13/05/1] gi|261221784|ref|ZP_05936065.1| integral membrane sensor signal transduction histidine kinase [Brucella ceti B1/94] gi|261315201|ref|ZP_05954398.1| integral membrane sensor signal transduction histidine kinase [Brucella pinnipedialis M163/99/10] gi|261317242|ref|ZP_05956439.1| integral membrane sensor signal transduction histidine kinase [Brucella pinnipedialis B2/94] gi|261320575|ref|ZP_05959772.1| integral membrane sensor signal transduction histidine kinase [Brucella ceti M644/93/1] gi|261751910|ref|ZP_05995619.1| integral membrane sensor signal transduction histidine kinase [Brucella suis bv. 5 str. 513] gi|261754568|ref|ZP_05998277.1| integral membrane sensor signal transduction histidine kinase [Brucella suis bv. 3 str. 686] gi|265988281|ref|ZP_06100838.1| integral membrane sensor signal transduction histidine kinase [Brucella pinnipedialis M292/94/1] gi|265997748|ref|ZP_06110305.1| integral membrane sensor signal transduction histidine kinase [Brucella ceti M490/95/1] gi|260920368|gb|EEX87021.1| integral membrane sensor signal transduction histidine kinase [Brucella ceti B1/94] gi|260923665|gb|EEX90233.1| integral membrane sensor signal transduction histidine kinase [Brucella ceti M13/05/1] gi|261293265|gb|EEX96761.1| integral membrane sensor signal transduction histidine kinase [Brucella ceti M644/93/1] gi|261296465|gb|EEX99961.1| integral membrane sensor signal transduction histidine kinase [Brucella pinnipedialis B2/94] gi|261304227|gb|EEY07724.1| integral membrane sensor signal transduction histidine kinase [Brucella pinnipedialis M163/99/10] gi|261741663|gb|EEY29589.1| integral membrane sensor signal transduction histidine kinase [Brucella suis bv. 5 str. 513] gi|261744321|gb|EEY32247.1| integral membrane sensor signal transduction histidine kinase [Brucella suis bv. 3 str. 686] gi|262552216|gb|EEZ08206.1| integral membrane sensor signal transduction histidine kinase [Brucella ceti M490/95/1] gi|264660478|gb|EEZ30739.1| integral membrane sensor signal transduction histidine kinase [Brucella pinnipedialis M292/94/1] Length = 532 Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 139/245 (56%), Gaps = 3/245 (1%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++++ K E E K LA VSHE+RTPL +IIGFS+++ ++ G L + R EYA Sbjct: 236 DEIAMLKAELESERIGKGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAG 295 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +SG+ +L++VN +LD S++E+G ++ + +AV +++ A +K + Sbjct: 296 LIHQSGHYLLELVNAVLDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCH 355 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---RVRDTG 745 N + ++AD R+V+QI LN+ +NA+ FT SGG + I + + V DTG Sbjct: 356 RVGNGVGELVADRRAVQQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTG 415 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ +L++ PF + NS EG+GLGL + K +V+ + G + S P +GT++ Sbjct: 416 IGIEPEDLQRIGTPFVRAGNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVM 475 Query: 806 IIFPL 810 I PL Sbjct: 476 IRLPL 480 >gi|256060709|ref|ZP_05450873.1| integral membrane sensor signal transduction histidine kinase [Brucella neotomae 5K33] Length = 609 Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 139/245 (56%), Gaps = 3/245 (1%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++++ K E E K LA VSHE+RTPL +IIGFS+++ ++ G L + R EYA Sbjct: 313 DEIAMLKAELESERIGKGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAG 372 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +SG+ +L++VN +LD S++E+G ++ + +AV +++ A +K + Sbjct: 373 LIHQSGHYLLELVNAVLDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCH 432 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---RVRDTG 745 N + ++AD R+V+QI LN+ +NA+ FT SGG + I + + V DTG Sbjct: 433 RVGNGVGELVADRRAVQQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTG 492 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ +L++ PF + NS EG+GLGL + K +V+ + G + S P +GT++ Sbjct: 493 IGIEPEDLQRIGTPFVRAGNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVM 552 Query: 806 IIFPL 810 I PL Sbjct: 553 IRLPL 557 >gi|306845191|ref|ZP_07477767.1| integral membrane sensor signal transduction histidine kinase [Brucella sp. BO1] gi|306274350|gb|EFM56157.1| integral membrane sensor signal transduction histidine kinase [Brucella sp. BO1] Length = 609 Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 139/245 (56%), Gaps = 3/245 (1%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++++ K E E K LA VSHE+RTPL +IIGFS+++ ++ G L + R EYA Sbjct: 313 DEIAMLKAELESERIGKGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAG 372 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +SG+ +L++VN +LD S++E+G ++ + +AV +++ A +K + Sbjct: 373 LIHQSGHYLLELVNAVLDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCH 432 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---RVRDTG 745 N + ++AD R+V+QI LN+ +NA+ FT SGG + I + + V DTG Sbjct: 433 RVGNGVGELVADRRAVQQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTG 492 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ +L++ PF + NS EG+GLGL + K +V+ + G + S P +GT++ Sbjct: 493 IGIEPEDLQRIGTPFVRADNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVM 552 Query: 806 IIFPL 810 I PL Sbjct: 553 IRLPL 557 >gi|163797148|ref|ZP_02191103.1| PAS/PAC domain [alpha proteobacterium BAL199] gi|159177664|gb|EDP62217.1| PAS/PAC domain [alpha proteobacterium BAL199] Length = 666 Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 90/250 (36%), Positives = 138/250 (55%), Gaps = 13/250 (5%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L+ D+++ + L + E KS+FLA VS+E+RTPL AIIGFSE+++ + Sbjct: 410 LSFRDVTDTLAVQRALQERTEALEMADRLKSEFLANVSYELRTPLNAIIGFSEILEQEYA 469 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAI 672 GP+ N R EYA I +S N ++ +VND+LD++ IE+G + L +P+ L EAV Sbjct: 470 GPM-NDRQKEYARAILQSSNRLVRLVNDILDLASIEAGYLELERIEVDPLRLIEAVE--- 525 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 L + A +RI + I+ D R + Q N++SNA FTP GG++++ T Sbjct: 526 GLGRERARARRIDFSVRIDGTVAPIMVDERRLTQALYNLVSNAFAFTPDGGRVLV-TVED 584 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++ V+ RV DTGVG+ LE + F + + R G GLGL L K++V+ + G Sbjct: 585 DDDMVLFRVADTGVGIA---LEDQGRVFDRFERAG--RDAGAGLGLALVKSLVELHHGTV 639 Query: 793 YIFSTPAKGT 802 + S P GT Sbjct: 640 ELLSEPGHGT 649 >gi|62289544|ref|YP_221337.1| sensor histidine kinase [Brucella abortus bv. 1 str. 9-941] gi|82699473|ref|YP_414047.1| ATPase-like ATP-binding protein [Brucella melitensis biovar Abortus 2308] gi|189023801|ref|YP_001934569.1| sensor histidine kinase [Brucella abortus S19] gi|237815042|ref|ZP_04594040.1| sensor histidine kinase [Brucella abortus str. 2308 A] gi|254688862|ref|ZP_05152116.1| sensor histidine kinase [Brucella abortus bv. 6 str. 870] gi|254696993|ref|ZP_05158821.1| sensor histidine kinase [Brucella abortus bv. 2 str. 86/8/59] gi|254729894|ref|ZP_05188472.1| sensor histidine kinase [Brucella abortus bv. 4 str. 292] gi|256257110|ref|ZP_05462646.1| sensor histidine kinase [Brucella abortus bv. 9 str. C68] gi|260545699|ref|ZP_05821440.1| sensor histidine kinase [Brucella abortus NCTC 8038] gi|297247957|ref|ZP_06931675.1| two-component system, PleD family, sensor histidine kinase DivJ [Brucella abortus bv. 5 str. B3196] gi|62195676|gb|AAX73976.1| sensor histidine kinase [Brucella abortus bv. 1 str. 9-941] gi|82615574|emb|CAJ10557.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Bacterial sensor protein, C-terminal:Histidine kinase [Brucella melitensis biovar Abortus 2308] gi|189019373|gb|ACD72095.1| sensor histidine kinase [Brucella abortus S19] gi|237789879|gb|EEP64089.1| sensor histidine kinase [Brucella abortus str. 2308 A] gi|260097106|gb|EEW80981.1| sensor histidine kinase [Brucella abortus NCTC 8038] gi|297175126|gb|EFH34473.1| two-component system, PleD family, sensor histidine kinase DivJ [Brucella abortus bv. 5 str. B3196] Length = 609 Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 139/245 (56%), Gaps = 3/245 (1%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++++ K E E K LA VSHE+RTPL +IIGFS+++ ++ G L + R EYA Sbjct: 313 DEIAMLKAELESERIGKGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAG 372 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +SG+ +L++VN +LD S++E+G ++ + +AV +++ A +K + Sbjct: 373 LIHQSGHYLLELVNAVLDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCH 432 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---RVRDTG 745 N + ++AD R+V+QI LN+ +NA+ FT SGG + I + + V DTG Sbjct: 433 RVGNGVGELVADRRAVQQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTG 492 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ +L++ PF + NS EG+GLGL + K +V+ + G + S P +GT++ Sbjct: 493 IGIEPEDLQRIGTPFVRAGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVM 552 Query: 806 IIFPL 810 I PL Sbjct: 553 IRLPL 557 >gi|261324700|ref|ZP_05963897.1| integral membrane sensor signal transduction histidine kinase [Brucella neotomae 5K33] gi|261300680|gb|EEY04177.1| integral membrane sensor signal transduction histidine kinase [Brucella neotomae 5K33] Length = 532 Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 139/245 (56%), Gaps = 3/245 (1%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++++ K E E K LA VSHE+RTPL +IIGFS+++ ++ G L + R EYA Sbjct: 236 DEIAMLKAELESERIGKGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAG 295 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +SG+ +L++VN +LD S++E+G ++ + +AV +++ A +K + Sbjct: 296 LIHQSGHYLLELVNAVLDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCH 355 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---RVRDTG 745 N + ++AD R+V+QI LN+ +NA+ FT SGG + I + + V DTG Sbjct: 356 RVGNGVGELVADRRAVQQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTG 415 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ +L++ PF + NS EG+GLGL + K +V+ + G + S P +GT++ Sbjct: 416 IGIEPEDLQRIGTPFVRAGNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVM 475 Query: 806 IIFPL 810 I PL Sbjct: 476 IRLPL 480 >gi|148559005|ref|YP_001258574.1| sensor histidine kinase [Brucella ovis ATCC 25840] gi|148370262|gb|ABQ60241.1| sensor histidine kinase [Brucella ovis ATCC 25840] Length = 609 Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 139/245 (56%), Gaps = 3/245 (1%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++++ K E E K LA VSHE+RTPL +IIGFS+++ ++ G L + R EYA Sbjct: 313 DEIAMLKAELESERIGKGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAG 372 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +SG+ +L++VN +LD S++E+G ++ + +AV +++ A +K + Sbjct: 373 LIHQSGHYLLELVNAVLDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCH 432 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---RVRDTG 745 N + ++AD R+V+QI LN+ +NA+ FT SGG + I + + V DTG Sbjct: 433 RVGNGVGELVADRRAVQQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTG 492 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ +L++ PF + NS EG+GLGL + K +V+ + G + S P +GT++ Sbjct: 493 IGIEPEDLQRIGTPFVRAGNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVM 552 Query: 806 IIFPL 810 I PL Sbjct: 553 IRLPL 557 >gi|23501466|ref|NP_697593.1| sensor histidine kinase [Brucella suis 1330] gi|161618552|ref|YP_001592439.1| integral membrane sensor signal transduction histidine kinase [Brucella canis ATCC 23365] gi|225627084|ref|ZP_03785122.1| sensor histidine kinase [Brucella ceti str. Cudo] gi|254701372|ref|ZP_05163200.1| integral membrane sensor signal transduction histidine kinase [Brucella suis bv. 5 str. 513] gi|254703917|ref|ZP_05165745.1| integral membrane sensor signal transduction histidine kinase [Brucella suis bv. 3 str. 686] gi|254707707|ref|ZP_05169535.1| integral membrane sensor signal transduction histidine kinase [Brucella pinnipedialis M163/99/10] gi|254709710|ref|ZP_05171521.1| integral membrane sensor signal transduction histidine kinase [Brucella pinnipedialis B2/94] gi|254712867|ref|ZP_05174678.1| integral membrane sensor signal transduction histidine kinase [Brucella ceti M644/93/1] gi|254716779|ref|ZP_05178590.1| integral membrane sensor signal transduction histidine kinase [Brucella ceti M13/05/1] gi|256031201|ref|ZP_05444815.1| integral membrane sensor signal transduction histidine kinase [Brucella pinnipedialis M292/94/1] gi|256159299|ref|ZP_05457094.1| integral membrane sensor signal transduction histidine kinase [Brucella ceti M490/95/1] gi|256254609|ref|ZP_05460145.1| integral membrane sensor signal transduction histidine kinase [Brucella ceti B1/94] gi|256369016|ref|YP_003106524.1| sensor histidine kinase [Brucella microti CCM 4915] gi|260168337|ref|ZP_05755148.1| sensor histidine kinase [Brucella sp. F5/99] gi|260566834|ref|ZP_05837304.1| sensor histidine kinase [Brucella suis bv. 4 str. 40] gi|261757798|ref|ZP_06001507.1| sensor histidine kinase [Brucella sp. F5/99] gi|294851947|ref|ZP_06792620.1| two-component system protein [Brucella sp. NVSL 07-0026] gi|23347370|gb|AAN29508.1| sensor histidine kinase [Brucella suis 1330] gi|161335363|gb|ABX61668.1| integral membrane sensor signal transduction histidine kinase [Brucella canis ATCC 23365] gi|225617919|gb|EEH14963.1| sensor histidine kinase [Brucella ceti str. Cudo] gi|255999176|gb|ACU47575.1| sensor histidine kinase [Brucella microti CCM 4915] gi|260156352|gb|EEW91432.1| sensor histidine kinase [Brucella suis bv. 4 str. 40] gi|261737782|gb|EEY25778.1| sensor histidine kinase [Brucella sp. F5/99] gi|294820536|gb|EFG37535.1| two-component system protein [Brucella sp. NVSL 07-0026] Length = 609 Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 139/245 (56%), Gaps = 3/245 (1%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++++ K E E K LA VSHE+RTPL +IIGFS+++ ++ G L + R EYA Sbjct: 313 DEIAMLKAELESERIGKGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAG 372 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +SG+ +L++VN +LD S++E+G ++ + +AV +++ A +K + Sbjct: 373 LIHQSGHYLLELVNAVLDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCH 432 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---RVRDTG 745 N + ++AD R+V+QI LN+ +NA+ FT SGG + I + + V DTG Sbjct: 433 RVGNGVGELVADRRAVQQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTG 492 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ +L++ PF + NS EG+GLGL + K +V+ + G + S P +GT++ Sbjct: 493 IGIEPEDLQRIGTPFVRAGNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVM 552 Query: 806 IIFPL 810 I PL Sbjct: 553 IRLPL 557 >gi|281354910|ref|ZP_06241404.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] gi|281317790|gb|EFB01810.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] Length = 1480 Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 96/339 (28%), Positives = 172/339 (50%), Gaps = 12/339 (3%) Query: 474 ILSTNRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 ++ N A KL G IL +P + F + P + + L L Q E LG Sbjct: 1000 VVRVNAAAEKLAGRSRAKILAEPCYRSFCRREAPPP-DCMVRLTLQTGLPQQGEAQILGK 1058 Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 T + ++ R + ++ + + D++E +Q+ KL A + A+ KS FLA + Sbjct: 1059 TYQ---VASRPLFEEGKLVNVLQ-SFVDMTEARQQSEKLKAAMESAQAADRAKSFFLATM 1114 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHEIRTPL A+IGFSE+++NQ P +EY + I+ +G +L ++ND+LD+SKIE+ Sbjct: 1115 SHEIRTPLNAVIGFSELLQNQSLSP---EEQVEYLHSINLAGTALLRLINDILDLSKIEA 1171 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 G++ + E + E ++ EK++ + + +P + D + ++Q+ LN++ Sbjct: 1172 GEVRIVAEKIDFTALCGEINAIFTQKVMEKKLYFKLEVPSGLPFLWLDGQQMRQVLLNLV 1231 Query: 713 SNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 NA+ FT GG + E + + + DTG+G++ +K +PF Q + Sbjct: 1232 GNAVKFTGEGGVTLKVEFRREGPEAGTLEIAIIDTGIGISREYQQKVFQPFIQDNAVRDR 1291 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 EGTGLGL +++ ++ G+ + S P +G+ ++ Sbjct: 1292 AYEGTGLGLSISQRLIRKMDGRLLLESEPGRGSCFTVVL 1330 >gi|260754346|ref|ZP_05866694.1| integral membrane sensor signal transduction histidine kinase [Brucella abortus bv. 6 str. 870] gi|260757565|ref|ZP_05869913.1| integral membrane sensor signal transduction histidine kinase [Brucella abortus bv. 4 str. 292] gi|260761390|ref|ZP_05873733.1| integral membrane sensor signal transduction histidine kinase [Brucella abortus bv. 2 str. 86/8/59] gi|260883371|ref|ZP_05894985.1| integral membrane sensor signal transduction histidine kinase [Brucella abortus bv. 9 str. C68] gi|260667883|gb|EEX54823.1| integral membrane sensor signal transduction histidine kinase [Brucella abortus bv. 4 str. 292] gi|260671822|gb|EEX58643.1| integral membrane sensor signal transduction histidine kinase [Brucella abortus bv. 2 str. 86/8/59] gi|260674454|gb|EEX61275.1| integral membrane sensor signal transduction histidine kinase [Brucella abortus bv. 6 str. 870] gi|260872899|gb|EEX79968.1| integral membrane sensor signal transduction histidine kinase [Brucella abortus bv. 9 str. C68] Length = 532 Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 139/245 (56%), Gaps = 3/245 (1%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++++ K E E K LA VSHE+RTPL +IIGFS+++ ++ G L + R EYA Sbjct: 236 DEIAMLKAELESERIGKGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAG 295 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +SG+ +L++VN +LD S++E+G ++ + +AV +++ A +K + Sbjct: 296 LIHQSGHYLLELVNAVLDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCH 355 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---RVRDTG 745 N + ++AD R+V+QI LN+ +NA+ FT SGG + I + + V DTG Sbjct: 356 RVGNGVGELVADRRAVQQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTG 415 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ +L++ PF + NS EG+GLGL + K +V+ + G + S P +GT++ Sbjct: 416 IGIEPEDLQRIGTPFVRAGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVM 475 Query: 806 IIFPL 810 I PL Sbjct: 476 IRLPL 480 >gi|90856146|gb|ABE01358.1| sensory histidine kinase/response regulator hybrid [Allochromatium vinosum] Length = 742 Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/253 (33%), Positives = 146/253 (57%), Gaps = 10/253 (3%) Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + + L+ ++ + ++ A++ AE+ S KS FLA +SHEIRTP+ A+IG S+++ Sbjct: 495 TIFKLSSGEVVAVYNDLTEIKRAQEAAERASRAKSQFLANMSHEIRTPMNAVIGLSDLLL 554 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 PL + + +Y I S L+L I+ND+LD SKIE+GK++L +P SLD+ + + Sbjct: 555 ET---PL-DAKQRDYLGKIRESSRLLLGIINDILDYSKIEAGKLDLSLQPFSLDDLLDQM 610 Query: 672 ISLVQLYANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 +L A+ + I LI +++ R+ D ++Q+ +N+LSNA+ FT GQ+++S Sbjct: 611 RTLFGNEADARDIELIFDLAVSSLHRVEGDALRLRQVLINLLSNAVKFTEQ-GQVVLSIR 669 Query: 731 H----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 T++ + VRDTG+G+ + + KPF Q +S R GTGLGL +++ +V+ Sbjct: 670 QLDAGTASARLRFEVRDTGIGIAPEQQTRLFKPFSQADSSTTRRYGGTGLGLVISQKLVE 729 Query: 787 ANMGKFYIFSTPA 799 G + STP Sbjct: 730 KMGGTLVLESTPG 742 >gi|296271900|ref|YP_003654531.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM 7299] gi|296096075|gb|ADG92025.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM 7299] Length = 1420 Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 110/373 (29%), Positives = 193/373 (51%), Gaps = 20/373 (5%) Query: 444 KRKMEIEVMQ----LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 ++K+E E++ + +I++ + IA+I+ G ++ N+ GY E+I +P+ Sbjct: 570 QKKLEKEILSEKDFISTIIDNANAIIAVIDSMGRMIKINKYAQDFVGYAEEEIASEPY-- 627 Query: 500 FLEQNTPSVMNHYLTEILSL----DLRQTLEKITLGSTKEEKLLSL-RIIIKKLPFSSCY 554 F + P + EI+ ++ + + + EEK+ ++++K S Y Sbjct: 628 FWSRFLPKDKKQKVLEIVKKANKGEIVKNFKNSWISKDGEEKVFEWSNMLVQKDDGSMNY 687 Query: 555 SLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 T+ D++E + +L AKK AEK + KS+FLA +SHEIRTP++ + G +I + Sbjct: 688 IATIGIDVTENHELLEELKGAKKNAEKANVVKSEFLANMSHEIRTPISGVTGLISLILDM 747 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 PL +Y N +S N +L I+ND+LD SKIE+GK+++ + SL+E + Sbjct: 748 PLEPLQR----DYLNKAKKSSNALLSIINDILDYSKIEAGKLDIIEQDFSLEEIFKNISN 803 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 L +K++ NIP I+ D + QI N++ NAI FT +G + S Sbjct: 804 LFGYETYKKQLEFTFVLDGNIPSLIIGDSLRLTQILNNLVGNAIKFTENGYVALKSEIKE 863 Query: 733 SNEE-VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 NE+ V+LR + DTG+G++ +K F Q+ S + + G+GLGL + K +++ Sbjct: 864 INEDVVVLRFCIEDTGIGISKEGQKKLFNTFEQLDTSNKRKYSGSGLGLSITKQLIELMH 923 Query: 790 GKFYIFSTPAKGT 802 GK ++ S KG+ Sbjct: 924 GKIWLESEEGKGS 936 >gi|254718728|ref|ZP_05180539.1| integral membrane sensor signal transduction histidine kinase [Brucella sp. 83/13] gi|306838706|ref|ZP_07471541.1| integral membrane sensor signal transduction histidine kinase [Brucella sp. NF 2653] gi|306406193|gb|EFM62437.1| integral membrane sensor signal transduction histidine kinase [Brucella sp. NF 2653] Length = 609 Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 139/245 (56%), Gaps = 3/245 (1%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++++ K E E K LA VSHE+RTPL +IIGFS+++ ++ G L + R EYA Sbjct: 313 DEIAMLKAELESERIGKGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAG 372 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +SG+ +L++VN +LD S++E+G ++ + +AV +++ A +K + Sbjct: 373 LIHQSGHYLLELVNAVLDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCH 432 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---RVRDTG 745 N + ++AD R+V+QI LN+ +NA+ FT SGG + I + + V DTG Sbjct: 433 RVGNGVGELVADRRAVQQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTG 492 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ +L++ PF + NS EG+GLGL + K +V+ + G + S P +GT++ Sbjct: 493 IGIEPEDLQRIGTPFVRADNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVM 552 Query: 806 IIFPL 810 I PL Sbjct: 553 IRLPL 557 >gi|78223984|ref|YP_385731.1| histidine kinase [Geobacter metallireducens GS-15] gi|78195239|gb|ABB33006.1| amino acid-binding domain sensor histidine kinase [Geobacter metallireducens GS-15] Length = 576 Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 137/245 (55%), Gaps = 3/245 (1%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ +L+ AK+ AE KS FLA +SHE+RTPL +IIGF+ ++ GP+ N Sbjct: 331 RERTAELAVAKERAEAADQLKSAFLATMSHELRTPLNSIIGFTGILLQGLGGPI-NDEQA 389 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + + S N +L +++D+LDISKIE+G++ + EP L E+V + V ++K + Sbjct: 390 KQLTMVRHSANHLLSLISDVLDISKIEAGQLKISPEPFQLRESVQKVTQSVAGLVDKKGL 449 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + A+++ I++D R V+Q+ LN+LSNA+ FT G I +E + V D+ Sbjct: 450 RLILEIADDVGSIVSDQRRVEQVLLNLLSNAVKFTEQG--TISVRCSRESEWYVTSVADS 507 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ +LE+ KPF Q+ + EGTGLGL + K +V+ G + S +G+ Sbjct: 508 GIGIKEEDLERLFKPFHQVDTGLSRKYEGTGLGLSICKRLVELMGGSITVESRQGEGSTF 567 Query: 805 EIIFP 809 + P Sbjct: 568 CFLLP 572 >gi|291569600|dbj|BAI91872.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 897 Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 121/384 (31%), Positives = 203/384 (52%), Gaps = 39/384 (10%) Query: 442 INKRKMEIEVMQLCSI-LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 I +RK E ++L ++ + D + + G N A K+ GY E++L T+ Sbjct: 279 ITERKEIDEKLRLTQFSIDKSRDYVLFSDINGRFFYVNEAACKILGYSQEELL----TME 334 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGS---TKEEKLLSLRIIIKKLPFS----SC 553 +E P + + I DLR T S TK + +++ I + L ++ C Sbjct: 335 VEDIDP-LASPGGWSIAWDDLRDQ-GSFTFESSHYTKTGQAIAVEITLSYLEYNHREYGC 392 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + DI + KQ + L AK+ AE S KS+FLAR+SHE+RTPL AI+GF+++++ + Sbjct: 393 A--VVRDIRDRKQTEIALQQAKEAAETASRAKSEFLARMSHELRTPLNAILGFTQLMERE 450 Query: 614 RFG----PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDE 666 + PL + + E+ I RSG +L+++ND+L++SKIE+G+++L +F +SL Sbjct: 451 LYHSPNIPLSDHK--EHLEIIGRSGEHLLELINDVLEMSKIEAGRVSLNPTNFNLISLLN 508 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI 725 ++ E +++L A+ K++ + + +NIP I AD + ++Q N+L NAI FT GG I Sbjct: 509 SLRE---MLELPASSKKLTLDFAIDDNIPTYIYADEQKLRQCLTNLLGNAIKFTLQGGVI 565 Query: 726 IISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIP---NSQQIRGEGTGLGLP 779 + N ++ V+DTG G+ E++ +PF Q NSQQ GTGLGL Sbjct: 566 LRVKLGKFNHDLGQLCFEVQDTGPGIDASEMDLLFEPFSQTETGRNSQQ----GTGLGLS 621 Query: 780 LAKAMVDANMGKFYIFSTPAKGTL 803 + + + G+ + S KGT+ Sbjct: 622 ITQKFIGLMGGEIQVSSERGKGTI 645 >gi|238650409|ref|YP_002916261.1| sensory transduction protein kinase [Rickettsia peacockii str. Rustic] gi|238624507|gb|ACR47213.1| sensory transduction protein kinase [Rickettsia peacockii str. Rustic] Length = 497 Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/238 (36%), Positives = 139/238 (58%), Gaps = 6/238 (2%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 EK SS + F A +SHE+RTPL AIIGFSE++ ++R + Y I+ +G + Sbjct: 262 VEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSER----DAEKSKNYIKDINDAGKHL 317 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ND+LD+SK + K+ + + L++ + ++ LV+ A++ + + + I Sbjct: 318 LSMINDILDLSKASADKLKVDSIDLDLNKLIRSSLILVKPRADQAEVALISRLPKEHVVI 377 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKA 756 AD + +KQ+ LN+LSNA+ FT SGG + I+ +++ ++V DTG+G+ ++ K Sbjct: 378 KADPKRLKQVFLNLLSNAVKFTNSGGSVTIALEKDELAKLVYIKVIDTGIGIEEKDIPKT 437 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + FGQI + + EGTGLGLPL K +V+ GKF + S +GT I I F YD S Sbjct: 438 LSAFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQSKINEGTTITITFT-YDGS 494 >gi|220903475|ref|YP_002478787.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867774|gb|ACL48109.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 666 Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 90/260 (34%), Positives = 143/260 (55%), Gaps = 14/260 (5%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 +HD+++ +Q + L AK+ AE ++ KS FLA +SHEIRTP+ I+G + ++ N Sbjct: 258 VHDVTKQRQHECMLREAKESAEAANAAKSIFLANMSHEIRTPMNGIMGMAHLVLNTDL-- 315 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISL 674 +P+ +Y I + +LDI+NDLLD SKIE+ M+L F+PV+ EAV ++L Sbjct: 316 --SPQQRDYVEKIHSTCESLLDIINDLLDFSKIEANHMDLEALPFQPVNEMEAV---LAL 370 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHT 732 ++ K ++ + +IP+ L D ++QI LN+ NAI F+ G ++ + H Sbjct: 371 LRPRTQHKNCVLESHIDPDIPQTLVGDALRLRQILLNLGGNAIKFSERGVVRVDLQLLHR 430 Query: 733 SNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 V L V D G+GM+ E E+ PF Q S R GTGLGL L + +V+ G Sbjct: 431 EGNSVTLACLVSDEGIGMSEEEQERIFTPFSQADTSITRRFGGTGLGLALCRRLVELMGG 490 Query: 791 KFYIFSTPAKGTLIEIIFPL 810 + ++ S P KG++ + P Sbjct: 491 RIHVQSAPGKGSVFRVELPF 510 >gi|51473428|ref|YP_067185.1| histidine kinase sensor protein [Rickettsia typhi str. Wilmington] gi|51459740|gb|AAU03703.1| histidine kinase sensor protein [Rickettsia typhi str. Wilmington] Length = 498 Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 85/238 (35%), Positives = 140/238 (58%), Gaps = 6/238 (2%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 EK SS + F A +SHE+RTPL AIIGFSE++ ++R + Y I +G + Sbjct: 262 VEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSER----DTEKSKNYIKDIHDAGKHL 317 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ND+LD+SK + K+ + + L++ +S ++ L++ A++ + + + I Sbjct: 318 LSMINDILDLSKASADKLKVDNIDLDLNKLISSSLILIKPRADQAEVELISRLPKEHIVI 377 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKA 756 AD + +KQ+ LN+LSNA+ FT +GG + I+ +++ ++V DTG+G+ ++ K Sbjct: 378 NADPKRLKQVLLNLLSNAVKFTNTGGSVTIALEKDELAKLVYIKVIDTGIGIEEKDIPKT 437 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + FGQI + + EGTGLGLPL K +V+ GKF + S KGT + I F +YD S Sbjct: 438 LSEFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQSQINKGTTVTITF-VYDGS 494 >gi|119897783|ref|YP_932996.1| putative histidine protein kinase [Azoarcus sp. BH72] gi|119670196|emb|CAL94109.1| putative histidine protein kinase [Azoarcus sp. BH72] Length = 613 Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 101/360 (28%), Positives = 174/360 (48%), Gaps = 7/360 (1%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ----NTPSVMNH 511 +LE+ D I I+NR+G I+ N +LFGY +++ + + + + P N Sbjct: 252 GLLESAPDAIVIVNRDGRIVLVNSQAERLFGYARSELIDQQIEMLMPERFRAQHPGHRNS 311 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 + T+ + LE EE + + + + + S + DI+E K+ + L Sbjct: 312 FFTDPRVRPMGVGLELFGRRRNGEEFPVEISLSPLETEEGTLVSSAIRDITERKRFERAL 371 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 + ++ K FLA +SHE+RTPL AIIGF+ + + GPL N + + Sbjct: 372 QEKNVELAQANAAKDHFLASMSHELRTPLNAIIGFTGTLLMKLPGPL-NEDQEKQLRTVQ 430 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 RS + +L ++NDLLD+++IE+GK FEPV L + E +++ A K + + Sbjct: 431 RSASHLLSLINDLLDVARIEAGKFEPVFEPVDLCATLEELAVVLRPQAEAKGLRLELKLP 490 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI-LRVRDTGVGMT 749 + D R+ QI +N+L NAI FT G ++ ++ + L+V D+G+G+ Sbjct: 491 GGSCVVETDQRAFSQIVINLLQNAIKFTEHGRIELALARIEADGRPAVELQVADSGIGIQ 550 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + PF +I + EGTGLGL L + G+ + ST +G++ +I P Sbjct: 551 PDDQTRLFAPFARITPAAGPAQEGTGLGLHLCLKLAAQLGGQIAMHSTYGEGSVFSLILP 610 >gi|91795067|ref|YP_564718.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans OS217] gi|91717069|gb|ABE56995.1| multi-sensor hybrid histidine kinase [Shewanella denitrificans OS217] Length = 1120 Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 90/254 (35%), Positives = 141/254 (55%), Gaps = 10/254 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ KQ + L AK+ AE + KS FLA +SHEIRTP+ AIIGFS+V+ + Sbjct: 516 DITPRKQMEQDLQKAKEAAELATEAKSAFLANMSHEIRTPMNAIIGFSDVMLTTDL--VA 573 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R +Y I+ S N +L ++ND+LD +K+E G++ L + SL E + S + + Sbjct: 574 AQR--KYVTTINASANSLLHLLNDILDSAKLEKGQLQLEMQDFSLAEVIDMVTSTLSIQT 631 Query: 680 NEKRILIRTSFANNIPRI---LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 +KR+ I S A + AD ++Q+ +NI+ NA+ FT G Q+ +S T + + Sbjct: 632 RKKRLDIELSLAPELAEYYYGAAD--RLRQVLMNIVGNAVKFTEKG-QVHLSIKPTQDGK 688 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V+ V+DTG+G+ + ++ +PF Q S R GTGLG ++K +V+ G+ + S Sbjct: 689 VLFSVQDTGIGIASDRIQHIFEPFTQADASMSRRFGGTGLGTSISKQLVNLMGGEIWASS 748 Query: 797 TPAKGTLIEIIFPL 810 KG+ E I PL Sbjct: 749 ELGKGSCFEFILPL 762 Score = 37.7 bits (86), Expect = 7.9, Method: Compositional matrix adjust. Identities = 33/143 (23%), Positives = 68/143 (47%), Gaps = 20/143 (13%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L +++E +DGI IN +GII S N+A++ + G+ ++ + ++ + + + Y Sbjct: 277 RLEAMMETAADGIVSINAKGIITSINQAITAMLGWDKAQLIGQNVSLLMPEPDKGRHDSY 336 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLS-------LRIII--KKLPFSSCYSLTMHDISE 563 L+ L+ T E +G+ +E L +R+ I +LP + + DIS+ Sbjct: 337 LSRYLA-----TNEPHIIGNAREVTALHKLGHTVPVRLAIGHARLPNEDVFVGFISDISQ 391 Query: 564 WKQEKNKLSHAKKIAEKESSHKS 586 +L +++ E E +S Sbjct: 392 ------RLKMERELKENEEKFRS 408 >gi|146307980|ref|YP_001188445.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina ymp] gi|145576181|gb|ABP85713.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina ymp] Length = 914 Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 88/265 (33%), Positives = 145/265 (54%), Gaps = 22/265 (8%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK------NQRFGPL 618 K+E + A + A ES KS FLA++SHEIRTPL ++G ++++ +QRF Sbjct: 388 KEEGFQSRRAAEQAAFESQAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPLDRSQRF--- 444 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 Y + I SG+ ++ ++ND+LD ++IESGK++L L++ +SE +SL Sbjct: 445 -------YVDTISSSGSSLMAVINDILDYARIESGKLSLEQIEFDLEDMISETLSLFTGQ 497 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-- 735 A +KR+ + S +P RI D +KQ+ +N+LSNA+ FT G + +S + S+ Sbjct: 498 ALDKRLRLYVSLEGGVPRRIQGDPTRLKQVLMNLLSNALKFTAE-GHVAVSVSRRSDSHG 556 Query: 736 --EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ V D+G+G++ L K + F Q +S R G+GLGL ++K +V+ G+ Sbjct: 557 QPHLVFAVSDSGIGISEQALAKLFESFAQGDSSTTRRYGGSGLGLAISKELVEMMGGRIE 616 Query: 794 IFSTPAKGTLIEIIFPLYDTSHPHD 818 + STP +GT PL + D Sbjct: 617 VQSTPGQGTRFAFDIPLLEAPEAPD 641 >gi|15892234|ref|NP_359948.1| histidine kinase sensor protein [Rickettsia conorii str. Malish 7] gi|15619371|gb|AAL02849.1| histidine kinase sensor protein [Rickettsia conorii str. Malish 7] Length = 497 Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 85/238 (35%), Positives = 138/238 (57%), Gaps = 6/238 (2%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 EK SS + F +SHE+RTPL AIIGFSE++ ++R + Y I+ +G + Sbjct: 262 VEKTSSSNTKFFTNISHELRTPLNAIIGFSEILMSER----DAEKSKNYIKDINDAGKHL 317 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ND+LD+SK + K+ + + L++ + ++ LV+ A++ + + + I Sbjct: 318 LSMINDILDLSKASADKLKVDSIDLDLNKLIRSSLILVKTRADQAEVALISRLPKEHVVI 377 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKA 756 AD + +KQ+ LN+LSNA+ FT SGG + I+ +++ ++V DTG+G+ ++ K Sbjct: 378 KADPKRLKQVFLNLLSNAVKFTNSGGSVTIALEKDELAKLVYIKVIDTGIGIEEKDIPKT 437 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + FGQI + + EGTGLGLPL K +V+ GKF + S +GT I I F YD S Sbjct: 438 LSAFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQSKINEGTTITITFT-YDCS 494 >gi|323698341|ref|ZP_08110253.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323458273|gb|EGB14138.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 1141 Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 95/279 (34%), Positives = 151/279 (54%), Gaps = 10/279 (3%) Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 L R++ + + L +I KQ + ++ AK+ AEK + KS+FLA +SHEIRT Sbjct: 355 LEKRVVERTDELNKTNRLLTSEIHIRKQTEKEIIKAKEAAEKATLAKSEFLANMSHEIRT 414 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 P+ AIIG + +IK +Y N ID S +L I+ND+LD+SKIE+G + + Sbjct: 415 PMNAIIGMTHLIKMTELSATQR----DYLNKIDISAKSLLGIINDVLDLSKIEAGMLTVE 470 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIH 717 L++ + + ++V ANEK++ S ++ P I D + QI +N+ +NA+ Sbjct: 471 SVGFKLEQVLEQLTTIVSPRANEKKLEFLISVGKDVPPAIQGDPMRMAQILINLCNNAVK 530 Query: 718 FTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 FT G ++ IST ++ LR V+D G+G+ ++++ +PF Q S + GT Sbjct: 531 FTDEGSVVVGISTLEKDADKARLRFTVKDDGIGIKPGKIQELFQPFTQADASTTRKYGGT 590 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLY 811 GLGL L K +VD G+ S KG+L E+ FP+Y Sbjct: 591 GLGLSLCKQLVDLMGGEIGAESEFGKGSLFWFEVTFPIY 629 >gi|265983704|ref|ZP_06096439.1| integral membrane sensor signal transduction histidine kinase [Brucella sp. 83/13] gi|264662296|gb|EEZ32557.1| integral membrane sensor signal transduction histidine kinase [Brucella sp. 83/13] Length = 532 Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 139/245 (56%), Gaps = 3/245 (1%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++++ K E E K LA VSHE+RTPL +IIGFS+++ ++ G L + R EYA Sbjct: 236 DEIAMLKAELESERIGKGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAG 295 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +SG+ +L++VN +LD S++E+G ++ + +AV +++ A +K + Sbjct: 296 LIHQSGHYLLELVNAVLDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCH 355 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---RVRDTG 745 N + ++AD R+V+QI LN+ +NA+ FT SGG + I + + V DTG Sbjct: 356 RVGNGVGELVADRRAVQQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTG 415 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ +L++ PF + NS EG+GLGL + K +V+ + G + S P +GT++ Sbjct: 416 IGIEPEDLQRIGTPFVRADNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVM 475 Query: 806 IIFPL 810 I PL Sbjct: 476 IRLPL 480 >gi|294496643|ref|YP_003543136.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292667642|gb|ADE37491.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 632 Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 136/250 (54%), Gaps = 2/250 (0%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI++ K + L +AK +AE + K++FLA VSHE+RTPL AIIGFS+++ + G L Sbjct: 380 DITKNKNAEKSLINAKLLAENANRAKTEFLANVSHELRTPLNAIIGFSQILSTNKSGNL- 438 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N + ++Y + I +SGN +L+++N +LDISK+++GK +L E V E + + Sbjct: 439 NDKELKYVSNILKSGNHLLELINKILDISKLQAGKQDLEIEYVDFAEICEDIKPFIDPLI 498 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 +K + I AD + QI N+L NAI FTP G I I+ + + Sbjct: 499 AKKNLSFECILDCTDTNIKADKTKMLQIMHNLLGNAIKFTPENGSIAIN-ARCIGDNFQV 557 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V+DTG+G+ + F Q+ +S + EGTGLGL L K ++ + G ++ S Sbjct: 558 SVKDTGIGIPEASHKDIFHSFKQVDSSATRKYEGTGLGLALVKEYIEMHGGDIWVESEVG 617 Query: 800 KGTLIEIIFP 809 KG+ + P Sbjct: 618 KGSTFTFVIP 627 >gi|114776707|ref|ZP_01451750.1| two-component hybrid sensor and regulator alr3120 [Mariprofundus ferrooxydans PV-1] gi|114552793|gb|EAU55224.1| two-component hybrid sensor and regulator alr3120 [Mariprofundus ferrooxydans PV-1] Length = 701 Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 107/361 (29%), Positives = 188/361 (52%), Gaps = 29/361 (8%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL------EQNTPSVM 509 S++E+ D I + GII N+ + L G ++++ P F E V+ Sbjct: 181 SLIESNIDAIIATDPSGIISDVNKQMEALTGCTRDELIGAPMKNFFTDPQRAEAGIKRVL 240 Query: 510 NHYLTEILSLDLRQTLEKITLGS-------TKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562 N L R K T+ S ++ KL + F++ D++ Sbjct: 241 NEKKVTDYELTARAWDGKETVVSYNATTFYDRDRKLQGV--------FAAA-----RDVT 287 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + K +L AK +AEK S KSDFL+ +SHE+R+PL AI+GF ++++++ P + + Sbjct: 288 DRKHLDVELEDAKSVAEKASLAKSDFLSSMSHELRSPLNAILGFGQLMESESPPPTDSQK 347 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 E I ++G +L ++N++LD+SK+ESGK+ L EPV L E + E S+V+ A E+ Sbjct: 348 --ESIAQILQAGWHLLTLINEILDLSKVESGKVPLSREPVLLSEVMLECQSMVEPQAQER 405 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 I + ++ I AD VKQI +N+L+NAI + + G+I + T ++ + + ++ Sbjct: 406 GIRMTFPQSDTPYFIHADRTRVKQIMINLLTNAIKYNSAKGEIEVEYTESAPGRLRISIK 465 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D+G G+T +LE+ +PF ++ + EGTG+GL ++K +V+ G S+ G+ Sbjct: 466 DSGAGLTPEQLEQLFEPFNRL-GQENGSEEGTGVGLVVSKRLVELMGGTIGAESSLGAGS 524 Query: 803 L 803 + Sbjct: 525 V 525 >gi|209550469|ref|YP_002282386.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536225|gb|ACI56160.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 1126 Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 136/255 (53%), Gaps = 8/255 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K + +L H AE KS+FLA +SHEIRTP+ ++G +E++ Sbjct: 565 DVTELKSREEELRHLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNL---- 620 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + R + + I +SGN +L I+ND+LD SKI++G+M L + EAV + +L+ +A Sbjct: 621 DTRQKTFVDIIVKSGNALLTIINDILDFSKIDAGQMKLRRAAFDITEAVEDVATLLSSHA 680 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEV 737 EK I + A ++P ++ D +QI N++ NA+ FT G + + + E+ Sbjct: 681 AEKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVGFEAAAGGEI 740 Query: 738 I--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +R+ DTG+G+ +LE F Q+ S R EGTGLGL + +VD G + Sbjct: 741 MASIRIEDTGIGIPAEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYLNVE 800 Query: 796 STPAKGTLIEIIFPL 810 S KG++ + P Sbjct: 801 SEWGKGSVFTVNLPF 815 >gi|256830078|ref|YP_003158806.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256579254|gb|ACU90390.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1055 Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 104/381 (27%), Positives = 189/381 (49%), Gaps = 24/381 (6%) Query: 441 RINKRKMEI-EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 ++ KR E+ E + +L S G I+ +GIIL N+ +S++ GY ++++ + Sbjct: 541 QVKKRTRELQESEERFKVLHNASFGGIAIHDQGIILDCNQGLSEITGYSADELIGMNGLM 600 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-- 557 + +++ ++ ++ IL D E + L EE +R+ + +P+ + + Sbjct: 601 LISEDSRDMV---MSNILFGD-DGPYEALGLRKNGEE--YPVRLEARNIPYKAKHVRVTE 654 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 DI+E K+ + L AK AE + KS+FLA +SHEIRTP+ ++G ++++ Sbjct: 655 FRDITEQKRAEEALLQAKTQAETANQAKSEFLANMSHEIRTPINGVMGMLQLLET----- 709 Query: 618 LGNPRYIEYANYI---DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P E A+YI + N + ++ D+LD+S++E+GKM + P + + + L Sbjct: 710 --TPLDAEQASYIHMATEAANRLTRLLTDILDLSRVEAGKMEIREAPFQIQDIIDSVSGL 767 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + A K + + A +P +L D V+Q+ N++ NA+ FT G ++ T + Sbjct: 768 FAVTARNKNVALECRLAPGMPEVLVGDEMRVRQVLFNLVGNALKFTERGRVVMDITALPA 827 Query: 734 NEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 ++ V RV DTG+G+ L +PF Q+ NS +G GLGL + + +V Sbjct: 828 KDDGDYRVHFRVTDTGIGIAEDRLGDIFEPFRQVENSLTRNYQGAGLGLSIVQRLVGLMG 887 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G I ST +GT ++ P Sbjct: 888 GTITIESTLGQGTSAHVVLPF 908 >gi|153010009|ref|YP_001371224.1| integral membrane sensor signal transduction histidine kinase [Ochrobactrum anthropi ATCC 49188] gi|151561897|gb|ABS15395.1| integral membrane sensor signal transduction histidine kinase [Ochrobactrum anthropi ATCC 49188] Length = 614 Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 81/235 (34%), Positives = 136/235 (57%), Gaps = 3/235 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E E K LA VSHE+RTPL +IIGFS+++ ++ G L N + EYA I +SG+ +L Sbjct: 323 ESERIGKGRLLAAVSHELRTPLNSIIGFSDMLSHEMGGKLANEKQREYAGLIHQSGHYLL 382 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++VN +LD S++E+G ++ + + +A S++ A +K + I ++ Sbjct: 383 ELVNAVLDNSRLETGNYSIDPQNFAFRDAAEMCTSVMLPQAEKKGVAFCHRVGAGIGELV 442 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEVI-LRVRDTGVGMTNYELEK 755 AD R+++QI LN+ SNA+ FT SGG + I T S ++ + V DTG+G+ ++++ Sbjct: 443 ADRRAIQQILLNLASNAVKFTQSGGCVTIDATRVMASGRAMLEISVSDTGIGIEPEDMQR 502 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 PF + N+ EG+GLGL + K +V+ + G + S P +GT++ I P+ Sbjct: 503 IGTPFVRADNNYTRAQEGSGLGLSVVKGLVELHQGSMQLKSCPGEGTIVTIRLPV 557 >gi|297621362|ref|YP_003709499.1| putative sensory histidine kinase [Waddlia chondrophila WSU 86-1044] gi|297376663|gb|ADI38493.1| putative sensory histidine kinase [Waddlia chondrophila WSU 86-1044] Length = 1005 Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 6/247 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q L A+K AE+ + KS FLA +SHEIRTPL +IG + ++ N PL + Sbjct: 761 EQSNQDLEIARKKAEEANIAKSTFLANMSHEIRTPLNGVIGMTSLLLNT---PLDKSQE- 816 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +YAN ID SG ++L+I+ND+LD SKIE+G++NL P +L+E V E L+Q A EK + Sbjct: 817 KYANRIDLSGKVLLEIINDILDFSKIEAGELNLEKIPCNLEEIVEEVGELMQPKAEEKGL 876 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + S+A++ P+ ++ D ++Q+ +N+ SNAI FT G + I ++ + + V D Sbjct: 877 NLEISYAHDTPKHLIGDPTRIRQVIMNLTSNAIKFTQE-GSVAIKVSNPKKAFIRVEVTD 935 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ + + F Q S + GTGLGL + K +++ GK S KG+ Sbjct: 936 TGIGIPQEKKMHIFEKFSQADVSTTRKFGGTGLGLAICKQLIEIMEGKIGCESIENKGST 995 Query: 804 IEIIFPL 810 PL Sbjct: 996 FWFEIPL 1002 >gi|242280788|ref|YP_002992917.1| histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123682|gb|ACS81378.1| histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 1375 Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/256 (33%), Positives = 141/256 (55%), Gaps = 8/256 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +I E K+ + +L A E+ + KS FLA +SHEIRTPL +I+G ++++KN Sbjct: 844 QEIEEHKKTEKRLEQAILRTEEANEAKSAFLASMSHEIRTPLNSILGVADLLKNTDL--- 900 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + EY N + SG ++L I+ND+LD SKIE+ + L PV L + + L Sbjct: 901 -SDEQGEYVNIFESSGEILLTIINDILDFSKIEANHVKLENIPVDLLQETESLMQLQATA 959 Query: 679 ANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN-- 734 A+ + + + + ++P I L D ++QI LNIL+NA+ FT SG I++S + SN Sbjct: 960 ASSRHVELVMRYKPDVPEIVLGDSTRIRQILLNILANAVKFTSSGEVSIVVSRSPESNST 1019 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + + + DTG+G+ +L+ +PF Q +S + G+GLGL +++ + + G Sbjct: 1020 DNITFTISDTGIGIAPEKLDSIFEPFSQADSSTTRKYGGSGLGLSISRKLAELMGGTITA 1079 Query: 795 FSTPAKGTLIEIIFPL 810 STP KG+ + PL Sbjct: 1080 SSTPGKGSTFMVTLPL 1095 >gi|148656419|ref|YP_001276624.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148568529|gb|ABQ90674.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 905 Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 104/379 (27%), Positives = 186/379 (49%), Gaps = 30/379 (7%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E V Q +IL++ SDG+ + ++ G +++ N A K+ P+++++ L + Sbjct: 538 EKAVSQSTAILQSLSDGVIVCDQNGAVITVNLAAEKILDRPIDELVTWNLGDLLRRLLGR 597 Query: 508 VMNHY-LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL-PFSSCYSLTMHDISEWK 565 ++ L ++L+ + TL +T + L R I L P S + ++ ++ Sbjct: 598 RVSELPLEDLLAHPWDERARPRTLSTTFQ---LGPRTISVTLDPVISTKEELLGAVAVFR 654 Query: 566 QEKNKLSHAKKIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + E ES K++F+ VSHE+RTP+T+I GF++++ GP+ N Sbjct: 655 ---------DRTREVESDRLKTEFIGTVSHELRTPMTSIKGFTQLLVMGNLGPV-NETQR 704 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E+ N I + ++ I+NDLLDI+KIE+G + L P+ + E +S+ + +Q +E++ Sbjct: 705 EFLNIIQSNAERMIAIINDLLDITKIETGSVELEIRPIHVAETLSKVLLDLQTKVHERQQ 764 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV------- 737 + S +P + AD QI N++SNA+ +TP GG I I + E V Sbjct: 765 TLTLSLPAGLPLVRADAHRFNQILFNLVSNAVKYTPRGGSITIEAREVTAEAVPEDERDG 824 Query: 738 -------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + VRDTGVG+ ++ + + F + N ++ GTGLGL L K +V G Sbjct: 825 LRPGRYIQIDVRDTGVGIAPDDVPRIWERFYRTENPLKVEAGGTGLGLSLVKPLVRLLGG 884 Query: 791 KFYIFSTPAKGTLIEIIFP 809 + ++ S G+ + P Sbjct: 885 RIWVESRINVGSTFSFVLP 903 >gi|304312499|ref|YP_003812097.1| Response regulator receiver [gamma proteobacterium HdN1] gi|301798232|emb|CBL46454.1| Response regulator receiver [gamma proteobacterium HdN1] Length = 994 Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 102/379 (26%), Positives = 199/379 (52%), Gaps = 14/379 (3%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 R+++ +L ++ T D + I +G++ + + ++LFGY ++++ + + + + Sbjct: 275 REIQAARQRLEAVFSTTVDAMITITPKGMVQEFSPSATRLFGYLAQEVVGQNVKMLMPEP 334 Query: 505 TPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSL---TMH 559 + + YL ++ R+ + + +G K+ + +R+ + + SS +L + Sbjct: 335 YRTEHDGYLQRYMTTRERRVIGIGREVVGLRKDGSIFPMRLAVGQADLSSGETLFVGMVS 394 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S+ K ++ L A + AE+ ++ K+ FL +SHEIRTP+ AIIGF++V+ Sbjct: 395 DLSQRKAMEDSLREAAEHAERAAAAKTRFLGNMSHEIRTPMNAIIGFTDVLLQTEL---- 450 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI-SLVQLY 678 P+ Y + +S +L ++ND+LD++K++SGK+ L SL AVSE + + +++ Sbjct: 451 TPKQRGYLTTVSQSSRTLLALLNDILDVTKLDSGKVVLESTDFSL-RAVSELVDATLRVS 509 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A K ++ + + +P D + Q+ N++ NAI FT S G++ + + S +V Sbjct: 510 AERKGLVFSCVYPDQVPEFFKGDSLRIGQVLTNLVGNAIKFTES-GEVRLLFGYESG-QV 567 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 ++V DTG+GM+ + PF Q S R GTGLG +++ +VD G+ + S Sbjct: 568 HIQVSDTGIGMSQAQAATIFDPFTQADASISRRFGGTGLGTTISRQLVDVMGGRIEVESE 627 Query: 798 PAKGTLIEIIFPLYDTSHP 816 KG++ + PL S P Sbjct: 628 LGKGSIFHVWLPLAVGSKP 646 >gi|304407983|ref|ZP_07389633.1| multi-sensor hybrid histidine kinase [Paenibacillus curdlanolyticus YK9] gi|304343002|gb|EFM08846.1| multi-sensor hybrid histidine kinase [Paenibacillus curdlanolyticus YK9] Length = 1091 Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 95/262 (36%), Positives = 146/262 (55%), Gaps = 21/262 (8%) Query: 547 KLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 K P S S+ +MH+I+E KQ A++E+ KS FLARVSHEIRTPL II Sbjct: 414 KGPMESSKSMICSMHEITELKQ-----------ADQENRAKSRFLARVSHEIRTPLNGII 462 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G ++++++ +YA+ I S +L+L I+ D+LD+SKIE+GK+N+ + Sbjct: 463 GMTQLMQHTELTDTQQ----DYAHKILSSSHLLLGIITDILDLSKIEAGKLNMEQLEFQI 518 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG 723 DE + E S V + K+I + +P +++ D +KQI +N+ SNAI FT G Sbjct: 519 DELLYELTSTVGVLKGIKQIEVILESEAGLPDKVIGDPLRLKQILMNLCSNAIKFTEHGH 578 Query: 724 QII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 ++ + N V LR VRDTG+GMT +++ +PF Q + + GTGLGLP+ Sbjct: 579 VLVRVERVIEMNGIVRLRFTVRDTGIGMTEDQIDMLYEPFWQAEYASASKLAGTGLGLPI 638 Query: 781 AKAMVDANMGKFYIFSTPAKGT 802 K +V G+ + S+P G+ Sbjct: 639 VKELVQLLGGELQVESSPGIGS 660 >gi|84385848|ref|ZP_00988878.1| putative histidine kinase [Vibrio splendidus 12B01] gi|84379164|gb|EAP96017.1| putative histidine kinase [Vibrio splendidus 12B01] Length = 1059 Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 143/251 (56%), Gaps = 15/251 (5%) Query: 563 EWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 E + K KL+ A + AEK H KS FLA +SHEIRTPL +IG SE++ + Sbjct: 366 EREHAKEKLTLAVEDAEKAKDHAIQASKAKSSFLANMSHEIRTPLNGVIGISEILAD--- 422 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 PL P +Y + I+ S L+L ++ND+LD SKIESG + + S+ E++ + S+V Sbjct: 423 TPL-TPTQRDYVDTIETSSQLLLSLINDILDFSKIESGMLLISPHSASIRESIYDIASIV 481 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTS 733 A E++I + + + P R++ D ++QI +N +SNA+ FT GG + I T S Sbjct: 482 APKAKEQKISVNVDISPDTPARVMIDDHRLRQILMNFMSNAVKFTAEGGVTLSIKTLEQS 541 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 ++ V +R VRDTG+G+ + ++ +PF Q +S + GTGLGL ++ +V+ G+ Sbjct: 542 DDNVTIRFAVRDTGIGIDKQQQKQIFEPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGQ 601 Query: 792 FYIFSTPAKGT 802 + S +G+ Sbjct: 602 IQLDSVKGEGS 612 >gi|239831437|ref|ZP_04679766.1| integral membrane sensor signal transduction histidine kinase [Ochrobactrum intermedium LMG 3301] gi|239823704|gb|EEQ95272.1| integral membrane sensor signal transduction histidine kinase [Ochrobactrum intermedium LMG 3301] Length = 610 Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 84/265 (31%), Positives = 149/265 (56%), Gaps = 5/265 (1%) Query: 551 SSCYSLTMHDISEWKQEK--NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 +S +++T+ S ++K +++ K E E K LA VSHE+RTPL +IIGFS+ Sbjct: 293 ASAHAITLIGRSLEGEQKLLEEIATLKAELESERIGKGRLLAAVSHELRTPLNSIIGFSD 352 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++ ++ G L + + EYA I +SG+ +L++VN +LD S++E+G ++ + ++ EA Sbjct: 353 MLSHEMGGKLASEKQREYAGLIHQSGHYLLELVNAVLDNSRLETGNYSIDPQTLAFREAA 412 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 +++ A +K + N I ++AD R+V+QI LN+ NA+ FT SGG + I Sbjct: 413 EMCTAVMLPLAEKKGVAFCHRVGNGIGELVADRRAVQQILLNLAGNAVKFTQSGGCVTID 472 Query: 729 TTHTSNEEVIL---RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 E + V DTG+G+ ++++ PF + N+ EG+GLGL + K +V Sbjct: 473 AARVMAEGRAMLEFSVSDTGIGIEPEDMQRIGTPFVRANNNYARAQEGSGLGLSVVKGLV 532 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810 + + G + S P +GT++ + P+ Sbjct: 533 ELHQGTMQLKSCPGEGTVVTVRLPV 557 >gi|167644688|ref|YP_001682351.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167347118|gb|ABZ69853.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 882 Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 104/371 (28%), Positives = 190/371 (51%), Gaps = 32/371 (8%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT-VFLEQNTPSV------ 508 S++E+ D + + GII N+ L G ++++ PF F + + Sbjct: 275 SLIESNIDALITTDPAGIITDVNKQTEALTGSTRDELIGAPFKDCFTDPDRAEAAIRRVL 334 Query: 509 ----MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 + Y + S D +QT+ +T ++ +L+ + F++ D++E Sbjct: 335 GEKSLTDYELTVRSRDGKQTVVSYN-ATTFYDRGRTLQGV-----FAAA-----RDVTER 383 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ + +L AK AE S KSDFLA +SHEIRTP+ A++G ++++ P Sbjct: 384 KRVEAELQQAKAAAESASRTKSDFLASMSHEIRTPMNAVMGIADLLAKTAL----TPEQD 439 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +Y RSG+ +L+++ND+LD+SK+E+ +++L SL + + +AI +V A EK + Sbjct: 440 KYVQIFRRSGDNLLNLINDILDLSKVEASQLDLEQTGFSLSDHLEKAIEMVAPKAQEKGL 499 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV--ILR- 740 ++ + A ++ ++ D ++Q+ LN+L NAI FT GQ+ + ++ V LR Sbjct: 500 ILISEIAPDVSNDLVGDPTRLRQVLLNLLGNAIKFT-QAGQVSLKVERDADGSVPTALRF 558 Query: 741 -VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ +L + + F Q +S R G+GLGL ++K +V+ G+ + ST Sbjct: 559 SVADTGIGIAGDKLARVFERFTQADSSTTRRFGGSGLGLTISKRLVELMGGRIGVTSTLG 618 Query: 800 KGTLIEIIFPL 810 +G++ P Sbjct: 619 QGSVFAFSVPF 629 >gi|91772950|ref|YP_565642.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711965|gb|ABE51892.1| fixL-like, HATPase domain-containing PAS sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 396 Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 101/349 (28%), Positives = 178/349 (51%), Gaps = 4/349 (1%) Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL-- 521 GI++++ +G I+ N A S+L GY +++L F +F + + L ++LS D Sbjct: 49 GISVLDMDGNIIYANEAFSQLHGYSADELLNINFLMFYHEGQVPHLKRLLDKLLSSDGCE 108 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 + + + + +L +I+ S + + D++ K+ ++ L A IA+ Sbjct: 109 NEDVWHMRKDGSIFPAILECNLILDGDNEPSYIFVALRDLTVTKKAEDALKRAMSIADAA 168 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + KS+FLA VSHE+RTPL +I+GFSE++ + R G L + + Y + +GN + +I+ Sbjct: 169 NCSKSEFLANVSHELRTPLNSIVGFSEILLDGRCGGLNDVQR-RYVQNVSNNGNHLSEII 227 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 N++L+ISKIE+GK ++ E + +V E + + K I + I D Sbjct: 228 NEILEISKIEAGKAEVNLEDFCILPSVMEVKESLMHSISLKNISFVCDVNPELHPIRLDK 287 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 K I ++L NA+ FT G + I + S+ I+ + D G+G+ +L F Sbjct: 288 TKFKHILHHLLINAVKFTSDHGSVGIHASAISDMMHIV-IFDDGIGIPREQLPHLYDKFY 346 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 Q+ S + + GTGLGL L K +V N G+ ++ S GT + ++ PL Sbjct: 347 QVDGSTKRKYGGTGLGLALTKKLVILNSGQMWVESEVNVGTKVHMMLPL 395 >gi|186686077|ref|YP_001869273.1| multi-sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186468529|gb|ACC84330.1| multi-sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 886 Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 147/256 (57%), Gaps = 3/256 (1%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 +LT+ ++ + K ++ L AK+ AE + K FL +SHE+RTPL++I+ +E ++N+ Sbjct: 627 ALTL-EVCDRKSAESALREAKEAAEVANRAKKTFLVNMSHELRTPLSSILEIAEALQNEV 685 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 +G + + ++ N ++ SG +L+++N +L+++ IES K+ L + E ++S Sbjct: 686 YGTVTEEQR-QFLNTLESSGKNLLELINQILELTDIESSKIELQLAATFIPELCDSSLSF 744 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-HTS 733 V+ A +K I + + I D R ++Q+ +N+LSNAI FT GG++ I +++ Sbjct: 745 VKNLALQKNIQLSVQIPEELEPIQVDERRIRQVFINLLSNAIKFTHDGGKVWIEVQPNST 804 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 NE + V DTG+GM + +L + +PF Q+ N+ R GTGLGL + + +V+ + G + Sbjct: 805 NEYIFFSVVDTGIGMLSDDLFRLFQPFIQVENASTRRSAGTGLGLVMVQKIVELHGGTVH 864 Query: 794 IFSTPAKGTLIEIIFP 809 S KG+ + P Sbjct: 865 AESQLGKGSRFTVKLP 880 >gi|13473249|ref|NP_104816.1| hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099] gi|14023997|dbj|BAB50602.1| Hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099] Length = 786 Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 84/236 (35%), Positives = 127/236 (53%), Gaps = 7/236 (2%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE KS+FLA +SHEIRTP+ ++G +E++ PR + + I +SGN + Sbjct: 232 AEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTEL----TPRQKTFTDVIVKSGNAL 287 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696 L I+ND+LD SKI +G++ L P L EAV + +LV EK + + +P Sbjct: 288 LTIINDILDFSKINAGQLTLDPAPFRLTEAVEDVATLVSARVAEKNLELIVRVDPRLPAH 347 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR--DTGVGMTNYELE 754 ++ D +QI N++ NA+ FT G +I T N+ V LR+R DTG+G+ +L+ Sbjct: 348 VVGDAGRFRQIVTNLVGNAVKFTEKGHVLIDVGGETVNDVVQLRLRVEDTGIGIPAEKLQ 407 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F Q+ S R EGTGLGL +A +VD GK + S +G++ PL Sbjct: 408 NVFEKFAQVDGSSTRRHEGTGLGLAIAARLVDLMAGKIGVESEIGRGSVFWFAVPL 463 >gi|258514818|ref|YP_003191040.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257778523|gb|ACV62417.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 1172 Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 87/260 (33%), Positives = 143/260 (55%), Gaps = 14/260 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E + + + AK+ AE + KSDFLA +SHEIRTP+ I+GF+E++ NQ Sbjct: 406 DVTELSRARIEAERAKEQAESANRAKSDFLAVMSHEIRTPMNGILGFAEILLNQAL---- 461 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + E I G +LD++N++LD+SKIESGKM L SL+ + + I+ V+ A Sbjct: 462 SSEQKESVQAISLCGEQLLDLINEILDLSKIESGKMVLEETDFSLENIIKDVITTVRQKA 521 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--- 735 +K + IR +F ++IP R + D ++QI N+L NA+ FT G +IIS + E Sbjct: 522 QDKGLEIRVNFLDDIPQRFIGDSIRIRQILSNLLFNAVKFTMQ-GSVIISVSKRQEECHE 580 Query: 736 -----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + V DTG+G++ + E F Q + G+GLGL + ++++D G Sbjct: 581 RDDIFPLQIEVADTGIGISQDKRELIFDAFTQAEGVIAQKFGGSGLGLTICRSLLDLMGG 640 Query: 791 KFYIFSTPAKGTLIEIIFPL 810 + ++ S +GT+ P+ Sbjct: 641 EIWVNSNKPQGTIFTFCLPV 660 >gi|294495585|ref|YP_003542078.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292666584|gb|ADE36433.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 736 Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 90/277 (32%), Positives = 155/277 (55%), Gaps = 6/277 (2%) Query: 535 EEKLLSL-RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 +E+++SL + ++ + FS Y+L + + +E L + +AE+ + KS+FLA +S Sbjct: 464 DEEIISLSKEVVGDISFS-LYNLELEATRQKGEES--LIEGRIVAEEANRTKSEFLANMS 520 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HE+RTPL ++IGFS+V++ L + +Y I SG+ +L+++N++LDISK+ESG Sbjct: 521 HELRTPLNSVIGFSQVLETNSSNHLDDKEQ-KYVKNIYESGSHLLELINNILDISKVESG 579 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713 KM+ E V+L E + + I LV+ A +K + + + + I D K+I N+LS Sbjct: 580 KMDYLPETVNLTEIIDDTIVLVEPMAKKKSVDLHLNIKSEDLEIHVDRLKFKEIMYNLLS 639 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 NAI FTP G + ++ + N+ + V DTG+G+ + E PF Q+ ++ G Sbjct: 640 NAIKFTPEKGTVSVN-SKCVNKNFQISVSDTGIGVPKEKFESIFDPFKQVDSTSSRSFGG 698 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 TGLGL L + V+ + G+ ++ S G+ P Sbjct: 699 TGLGLALVRKYVEMHGGEIWVESEVGVGSTFTFTLPF 735 >gi|256424548|ref|YP_003125201.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] gi|256039456|gb|ACU63000.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] Length = 1203 Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 116/394 (29%), Positives = 190/394 (48%), Gaps = 35/394 (8%) Query: 436 EDVDTRINKRKMEIEVMQ----LCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVE 490 +D+D K+K ++ + Q L +LE+ S+ I + EGII N+ +L GY Sbjct: 524 QDID---EKKKADLAIQQSRQLLEDVLESASEVSIIATDHEGIITLFNKGAERLLGYKAG 580 Query: 491 DILRKPFTVFLEQNTPSVMNHYL----------------TEILSLDLRQTLEKITLGSTK 534 ++ K L +MN + T + L+ + E + Sbjct: 581 EVTGKESWTILHAE-EEIMNRSIELSALSGQHIEGFEVFTYVPELEGSERREWTYIRKDG 639 Query: 535 EEKLLSLRII-IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 + ++S+ + I+ + Y DI+E K+ + L AK AE S KS+FLA +S Sbjct: 640 SQIIISMVVTPIRDNAVITGYLGIAVDITERKKAERDLKEAKIQAEYASKAKSEFLANMS 699 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HEIRTPL +IGF++++ N +Y +++S N +L I+ND+LD SKIE+G Sbjct: 700 HEIRTPLNGVIGFTDLVLKTAL----NETQQQYVAIVNQSANSLLSIINDILDFSKIEAG 755 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNIL 712 K+ L + E S+A ++ A +K + + + + +PR + AD+ +KQI LN+L Sbjct: 756 KIELDISKCDIYEFSSQASDILSFQAQQKGLEMLLNVSPELPRFMWADIVRLKQILLNLL 815 Query: 713 SNAIHFTPSGGQII----ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 SNA+ FT G + I+ + VRDTG+G+ + EK + F Q S Sbjct: 816 SNAVKFTEKGEIELEIKPIAYPSVGMTTIRFEVRDTGIGIRKNKQEKIFEAFLQEDISTT 875 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 R GTGLGL ++ ++ K + ST KG+ Sbjct: 876 KRYGGTGLGLSISNKLLALMGSKLQLESTTGKGS 909 >gi|118579861|ref|YP_901111.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118502571|gb|ABK99053.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 785 Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 106/361 (29%), Positives = 180/361 (49%), Gaps = 22/361 (6%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LTE 515 I+ + +D + +++ EGII N A L GY +++ L + + + + Sbjct: 274 IIRSMNDAMIVVSPEGIIDRVNTATLNLLGYDERELIGSNIDKILASDAATGEGAAPVPD 333 Query: 516 ILSLDLRQTLEKI-TLGSTKEEKLLSLRIIIKKLPFSS-------CYSLTMHDISEWKQE 567 + L R + K+ T ++ +L+ + + + C +L DI+E KQ Sbjct: 334 LAGLIPRGFINKVETFYRARDGRLIPVIFSASVMHGAGKSAQGIVCVAL---DITERKQA 390 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + L AK+ AE + KS FLA +SHEIRTP+ ++G +++ + R + + A Sbjct: 391 EEALRIAKENAEAANRAKSQFLANMSHEIRTPMNGVLGMLDLLMDSRL----DENQLRLA 446 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + S + +L+I+ND+LD SKIE+G+ LH +L E V E + + A +K I + Sbjct: 447 SMAHGSADKLLEIINDILDFSKIEAGRFQLHMADFALRETVREVADMFWVKAQDKNIRLI 506 Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII--ISTTHTSNEEVILR--VR 742 +++P + D ++Q+ +N++ NA+ FT + GQI +S T+ E LR VR Sbjct: 507 CQIDDSVPNTVRGDGVRLRQVLINLVGNAVKFTEN-GQIFLGVSLMETTAENTQLRFEVR 565 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG G+ F Q NS R EGTGLGL +++ +V+A G + S P G+ Sbjct: 566 DTGTGIPLDAQPYIFDAFSQADNSMARRHEGTGLGLAISRELVEAMGGTIGVRSEPGTGS 625 Query: 803 L 803 L Sbjct: 626 L 626 >gi|254293600|ref|YP_003059623.1| histidine kinase [Hirschia baltica ATCC 49814] gi|254042131|gb|ACT58926.1| histidine kinase [Hirschia baltica ATCC 49814] Length = 474 Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 123/227 (54%), Gaps = 1/227 (0%) Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 + ++ F A+ SHE+R+ L AI+GFSEV+K FG L + +Y EYA I G + V+ Sbjct: 234 AQRTLFFAKTSHELRSSLNAILGFSEVMKEGVFGELSD-KYKEYAQMIHEGGKSLQMTVD 292 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702 D+LD+SKI++G+ + VSL E + + + + A I + S + AD R Sbjct: 293 DILDLSKIDAGQYKISPVQVSLTELMWDMVKFMSDQARRSDIKLSVSSLDRDVEAYADPR 352 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 +V+ IA N++SNAI FTP GG + IS + + VRDTG GM E EK +KPF Q Sbjct: 353 AVRHIAQNLVSNAIKFTPHGGAVAISVREDEDGGSWMSVRDTGPGMDPAEFEKILKPFIQ 412 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 S GTGLGL + + G + S +G++I + FP Sbjct: 413 TDESSTSGKHGTGLGLSVVNGFAQLHGGHIQLDSQAGEGSIISVYFP 459 >gi|189426162|ref|YP_001953339.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189422421|gb|ACD96819.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 898 Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 91/258 (35%), Positives = 147/258 (56%), Gaps = 8/258 (3%) Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 P +++ +DI+E + + +L+ AK AE + KSDFLA +SHEIRTP+ ++G ++ Sbjct: 490 PEPGLFAVVFNDITERFKSQQELAEAKDAAEAANQAKSDFLANMSHEIRTPMNGVVGLTQ 549 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++ RF L + +EY + I+ S + +L ++ND+LD+SKIESGK+ L F SL +A+ Sbjct: 550 LL---RFTELTTEQ-VEYLDSIETSADNLLSLINDILDLSKIESGKVELEFTDFSLRKAI 605 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QII 726 + I + EK + I+ A ++P ++ D VKQ+ +N+L NAI FT G I Sbjct: 606 QDIIITQKSRIFEKGLQIKQEIAADLPELVNGDQLRVKQVFINLLGNAIKFTERGTITIA 665 Query: 727 ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 +S + ++R V DTG+GM+ L+K PF Q +S R GTGLGL + + + Sbjct: 666 VSILERESNRALIRITVSDTGIGMSQETLQKIFDPFAQADSSTTRRFGGTGLGLSICRKL 725 Query: 785 VDANMGKFYIFSTPAKGT 802 + G + S P G+ Sbjct: 726 AELMGGAITVESIPGSGS 743 >gi|94265011|ref|ZP_01288780.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93454500|gb|EAT04785.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 581 Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/245 (34%), Positives = 135/245 (55%), Gaps = 8/245 (3%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 SE ++ +L A E+ S KS+FLA +SHE+RTP+ AI GF+E++ PL N Sbjct: 174 SEIARQTAELRQANARLEESSRLKSEFLANMSHELRTPMNAITGFAELLAET---PL-NQ 229 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 EY I ++ +L+++ND+LD++KIE+GK++L P SLDE + ++ L A + Sbjct: 230 EQDEYCRTIRQAAAALLNLINDILDLAKIEAGKLDLEAVPFSLDELLEGVRAMFTLAARK 289 Query: 682 KRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEV 737 K I I +P L D ++Q+ +N+L NAI FT GG ++ +T + Sbjct: 290 KGIEITIKRGEGLPDTLRGDSHRLRQVLINLLGNAIKFTEQGGVELEVAAGSTAADKVRL 349 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 VRD+G+G++ + LE + F Q S R GTGLGL + + +V+ G+ + S Sbjct: 350 FFAVRDSGMGISPHRLEAIFEKFTQADGSTTRRFGGTGLGLAICRQLVELMGGQIEVSSQ 409 Query: 798 PAKGT 802 KG+ Sbjct: 410 QGKGS 414 >gi|256828233|ref|YP_003156961.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577409|gb|ACU88545.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1260 Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 107/375 (28%), Positives = 184/375 (49%), Gaps = 25/375 (6%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI-LRKPFTVFLE-QNTPSVMN 510 +L +I + + GI++++ + ++ NR + +FGY V +I L P + +N Sbjct: 251 ELQAIFDNSLVGISVLSSDHKVIRANRRFATIFGYSVAEIPLISPEKFHVSGRNFDEFSE 310 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP---FSSCYSLTMHDISEWK-- 565 + + ++ Q + K+ + ++ K + S + DIS+ K Sbjct: 311 KFFNRLAEREIAQLEYQF---RRKDGSVFWSQVSAKAIDPQDLSRGVIFVIEDISDRKKA 367 Query: 566 -----QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 Q L AK A+K + KS+FLAR+SHEIRTP+ AI+G +E+++ N Sbjct: 368 SELLRQHAEDLRVAKDQADKATRSKSEFLARMSHEIRTPMNAILGMAEMLQETSL----N 423 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 EY +G L+L I+ND+LD SKIE G++ L P +L E V + L A Sbjct: 424 EDQQEYVKTFSSAGELLLGIINDILDFSKIEVGQIKLESIPFNLRELVDDVNKLFVYRAE 483 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 EK + + + + R + D ++QI +N++ NA+ FT GG + +S T + ++ Sbjct: 484 EKALRLEKKVSEGLAQRYIGDPTRIRQIIINLVGNALKFTSVGG-VTMSVTESVMDDGAP 542 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V+DTG+G+ +L + F Q +S GTGLGL ++K +V+ G+ ++ Sbjct: 543 CCLFAVKDTGIGIPKSKLGTVFESFAQADSSTTREFGGTGLGLAISKKLVELMGGQIWVE 602 Query: 796 STPAKGTLIEIIFPL 810 S P +GT PL Sbjct: 603 SEPGQGTTFFFKLPL 617 >gi|323137189|ref|ZP_08072268.1| multi-sensor signal transduction histidine kinase [Methylocystis sp. ATCC 49242] gi|322397547|gb|EFY00070.1| multi-sensor signal transduction histidine kinase [Methylocystis sp. ATCC 49242] Length = 814 Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/237 (35%), Positives = 138/237 (58%), Gaps = 2/237 (0%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H K AE KS+FLA +SHE+RTPL AIIGFSE+++ + FG LG+P+Y+EY N I + Sbjct: 518 HQKAEAEAAYLAKSEFLANMSHELRTPLNAIIGFSEMMQAEPFGSLGSPKYVEYCNNIRQ 577 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 G + ++++D+LD+S++E+G + L V++ +A AI+ + A+ K I I + A+ Sbjct: 578 GGAYLNEVLSDILDMSRLEAGLVRLAEREVNVADATRRAIASWRSRADAKNIQI-VAEAD 636 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 + R + D ++ + +LSN+I FT +GG I + I V DTG G+ Sbjct: 637 DRLRCIGDESAIVKALGVLLSNSIKFTDAGGFIRLRARRHGAAIAIF-VEDTGRGIDPRA 695 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + +PF Q + + +G+GLGL +A+A+VD + G I S GT+ + P Sbjct: 696 ISRLGRPFEQSADLMENGMKGSGLGLAIARALVDLHGGALRIRSRLGLGTIAMMRLP 752 >gi|87310159|ref|ZP_01092291.1| sensory box sensor histidine kinase/response regulator [Blastopirellula marina DSM 3645] gi|87287149|gb|EAQ79051.1| sensory box sensor histidine kinase/response regulator [Blastopirellula marina DSM 3645] Length = 845 Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 110/362 (30%), Positives = 186/362 (51%), Gaps = 16/362 (4%) Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQNTPSVM 509 V +L + +T + I N+ G N A ++L GY E+ I RKP ++ T Sbjct: 318 VKKLSLVASSTRHSVVITNQAGETEWVNNAFTQLTGYSAEEAIGRKPGSLLQGPET---- 373 Query: 510 NHYLTEILSLDLRQ----TLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISE 563 N EI+ L++ + E + ++L I + + S + T DI++ Sbjct: 374 NQETIEIVRRALQKQEQVSAELLNYAKDGHSYWIALEIEPVFDQEGRLSNFIATQIDITD 433 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 + +L A + AE + KS FLA +SHEIRTPL I+GF++++ + R Sbjct: 434 QVRRTEELIEAMETAESANHAKSQFLANMSHEIRTPLNGIMGFTDLLLYDIESTEADRR- 492 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 EY + SG +L ++N++LD+SKIESG++ + P S + +++ IS+++ EK+ Sbjct: 493 -EYLETVRSSGEHLLALINEILDLSKIESGQLLIEKFPCSPQQILTDVISVLRPKFEEKK 551 Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST--THTSNEEVILR 740 I IR + ++IP ++L D +KQ+ LNI+ NAI FT +G I++ + +I Sbjct: 552 IQIRRHWDSDIPTQVLTDAPRLKQLLLNIVGNAIKFTQTGEVRIVARLEAEATRSRLIFD 611 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+G+ +LE +PF Q +S R GTGLGL +++ + + G + S Sbjct: 612 VIDTGIGIPQGKLEMIFQPFSQADSSVTRRFGGTGLGLTISRNLAELLGGSLHAESVEGL 671 Query: 801 GT 802 G+ Sbjct: 672 GS 673 >gi|330506779|ref|YP_004383207.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] gi|328927587|gb|AEB67389.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] Length = 1103 Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 114/374 (30%), Positives = 186/374 (49%), Gaps = 31/374 (8%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL--------------RKPFT 498 ++ I+ D +IN+EG++++ NRA+ + EDIL R+P Sbjct: 442 RMADIINFLPDATFVINKEGVVIAWNRAIEMMTQVKAEDILGKGEYEYSLPFYKKRRPIL 501 Query: 499 VFLEQNTP-SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYS 555 + L N V Y E L +L ++ S KL L+ L S + Y Sbjct: 502 IDLVTNQDLDVKGCY--EELKWHEDGSLAGVSFISNLNGKLTYLQGSAAVLYDSEGNIYG 559 Query: 556 L--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 ++ DI++ K + L ++K+ AE + KS+FLA +SHEIRTP+ A++G + ++ Sbjct: 560 AIESIRDITDQKMVEEDLKNSKERAELATRSKSNFLANMSHEIRTPMNAVVGMTGLLLET 619 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 P EY I GN +L I+N++LD SKIE KM L P L + E++ Sbjct: 620 DL----KPEQREYLETIRTGGNTLLAIINNILDYSKIEGEKMELEILPFDLLGCIEESMD 675 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +V A EK + I +++PR IL D ++QI +N+L NA FT G+I++S + T Sbjct: 676 MVAANAAEKGLEIAYFQDDDVPRFILGDQIRLRQILVNLLGNATKFTEK-GEIVLSLSTT 734 Query: 733 ----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 E+ RV DTG+G++ L + + F Q+ +S GTGLGL +++ +V+ Sbjct: 735 PLDDGRIELHFRVMDTGIGISQENLSRLFQFFTQVDSSTTRHYGGTGLGLAISRRLVEMM 794 Query: 789 MGKFYIFSTPAKGT 802 G+ ++ S G+ Sbjct: 795 EGRIWVESEKGVGS 808 >gi|254409964|ref|ZP_05023744.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196183000|gb|EDX77984.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1946 Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/263 (33%), Positives = 146/263 (55%), Gaps = 23/263 (8%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H + ++ + AK+IAE + KSDFLA +SHEIRTP+ A+IG + ++ + + Sbjct: 1230 HQRQQLAEQNVAMEKAKQIAEAANRAKSDFLATMSHEIRTPMNAVIGMTGLLLDTQL--- 1286 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + E+A I SG +L I+ND+LD SKIESGK+ L +P +L + E++ L+ Sbjct: 1287 -SHEQAEFAETIRNSGEALLTIINDILDFSKIESGKLELEEQPFNLRTCIEESLDLLTPK 1345 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST-------- 729 A EK I + F + P I D+ ++QI +N+LSNA+ FT G++ +S Sbjct: 1346 AAEKAIELAYLFDPHTPNTIRGDITRLRQILVNLLSNALKFTHQ-GEVTVSVSSKRVSPQ 1404 Query: 730 -----THTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 +H +N+ E++ V+DTG+G+ L++ K F Q+ +S GTGLGL + Sbjct: 1405 SLEQLSHRTNKEQQYEILFAVKDTGIGIPPDRLDRLFKAFSQVDSSTSRHYGGTGLGLVI 1464 Query: 781 AKAMVDANMGKFYIFSTPAKGTL 803 +K + + G+ ++ S KG++ Sbjct: 1465 SKRLSEMMGGRIWVESEVGKGSI 1487 >gi|126730008|ref|ZP_01745820.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata E-37] gi|126709388|gb|EBA08442.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata E-37] Length = 841 Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 114/410 (27%), Positives = 194/410 (47%), Gaps = 44/410 (10%) Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR------- 479 ++P GI VD ++M++ S +E DG I + E +L N+ Sbjct: 179 HLPDGGIVSLTVDI--------TDLMRMWSAVEELPDGFVIYDAEDRLLMCNQPYRDYYK 230 Query: 480 --AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD---LRQTLEKITLGSTK 534 A + + G EDILR + N E + + L L K + Sbjct: 231 ASAPAMVPGTTFEDILRY-----------GLKNGQYAEAVGREEEWLEDRLTKHRFAELE 279 Query: 535 EEKLLS----LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 E+ L LRI ++ L + DI++ K+++ +L A AE + KS FLA Sbjct: 280 HEQQLDDGRWLRIYERETTDGGRVGLRV-DITQIKEDQQRLKEATIRAEAANRAKSAFLA 338 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SHEIRTP+ ++G +++++ N YA+ I SG +L I+ND+LD SKI Sbjct: 339 NMSHEIRTPMNGVVGMADLLRETEL----NDEQKLYADTIRSSGEALLVIINDILDYSKI 394 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIAL 709 E+ K+ L+ EP L+ A+ + + L+Q A +K I + + +P + D V+QI Sbjct: 395 EAEKLVLNPEPFDLERAIHDVVMLLQPTARDKDITLLVDYDMFLPTHFVGDPGRVRQILT 454 Query: 710 NILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 N++ NA+ FT G +++ + V + V DTG+G+ ++E F Q+ + Sbjct: 455 NLVGNAVKFTVQGYVLVRVVGVMEDGGSTAVHITVEDTGIGIPADKVEHVFGEFNQVEDE 514 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + + EGTGLGL + + +V+ G+ ++ S P +G+ + L HP Sbjct: 515 RNRKFEGTGLGLAITRRLVELMGGEVWVESEPGRGSFFGLRIMLRTDEHP 564 >gi|325914780|ref|ZP_08177118.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937] gi|325539057|gb|EGD10715.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937] Length = 1364 Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 106/378 (28%), Positives = 182/378 (48%), Gaps = 29/378 (7%) Query: 464 GIAII--NREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLD 520 G AII + G + NRA KL GY ED++ R+ + F+E H L+E + Sbjct: 503 GYAIIATDSSGFVTLFNRAAEKLLGYNAEDVIGRRKASQFVEPEELQDRAHLLSEQTGVP 562 Query: 521 LRQTLEKI----TLGSTKEEKLLSLRIIIKKLP----FSSC---------YSLTMHDISE 563 + QTLE + +LG + + + ++LP S+ Y D++E Sbjct: 563 VAQTLEAVAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDNDQVIGYLGVAVDLTE 622 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K + +L A A+ + KSDFLA +SHEIRTP+ AI+G +++ Sbjct: 623 QKMHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQ--- 679 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + IDRS +L+I+ND+LD SKIE+G+++L P L++ L++ + K Sbjct: 680 -DMVTKIDRSARTLLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSLSAKP 738 Query: 684 I-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVI 738 + +I + +L D + Q+ +N++ NAI FT G ++ S + +++ Sbjct: 739 VEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKVKLL 798 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 VRDTG+G++ + PF Q S R G+GLGL +++ +++ G+ + S P Sbjct: 799 FSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEVESVP 858 Query: 799 AKGTLIEIIFPLYDTSHP 816 +G+ + L + P Sbjct: 859 GRGSEFYFVVTLEKAASP 876 >gi|225852106|ref|YP_002732339.1| integral membrane sensor signal transduction histidine kinase [Brucella melitensis ATCC 23457] gi|256264384|ref|ZP_05466916.1| sensor histidine kinase [Brucella melitensis bv. 2 str. 63/9] gi|225640471|gb|ACO00385.1| integral membrane sensor signal transduction histidine kinase [Brucella melitensis ATCC 23457] gi|263094678|gb|EEZ18457.1| sensor histidine kinase [Brucella melitensis bv. 2 str. 63/9] gi|326408601|gb|ADZ65666.1| integral membrane sensor signal transduction histidine kinase [Brucella melitensis M28] gi|326538322|gb|ADZ86537.1| integral membrane sensor signal transduction histidine kinase [Brucella melitensis M5-90] Length = 609 Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 139/245 (56%), Gaps = 3/245 (1%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++++ K E E K LA VSHE+RTPL +IIGFS+++ ++ G L + R EYA Sbjct: 313 DEIAMLKAELESERIGKGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAG 372 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +SG+ +L++VN +LD S++E+G ++ + +AV +++ A +K + Sbjct: 373 LIHQSGHYLLELVNAVLDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVDFCH 432 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---RVRDTG 745 N + ++AD R+V+QI LN+ +NA+ FT SGG + I + + V DTG Sbjct: 433 RVGNGVGELVADRRAVQQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTG 492 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ +L++ PF + NS EG+GLGL + K +V+ + G + S P +GT++ Sbjct: 493 IGIEPEDLQRIGTPFVRAGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVM 552 Query: 806 IIFPL 810 I PL Sbjct: 553 IRLPL 557 >gi|149178788|ref|ZP_01857370.1| probable sensor/response regulator hybrid [Planctomyces maris DSM 8797] gi|148842405|gb|EDL56786.1| probable sensor/response regulator hybrid [Planctomyces maris DSM 8797] Length = 1780 Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 145/246 (58%), Gaps = 7/246 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D ++ ++ + L ++K A++ + KS FLA +SHEIRTP+TA++G+++++ G Sbjct: 1374 DFTQEREGEEALRRSEKQAKQANVAKSAFLANMSHEIRTPMTAVLGYTDLL----IGMEQ 1429 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 EY I R+GN +L+I+ND+LD+SKIE+GK+ + E SL+E +++ S++++ A Sbjct: 1430 EQEKAEYLQNIKRNGNFLLEIINDILDLSKIEAGKLEISQESFSLNEMLADLQSMMRVRA 1489 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 EK + F +++P RI D + ++QI LN++SNAI FT +G ++ + + Sbjct: 1490 EEKNLEFGIEFISDLPERIETDPKRLRQILLNLISNAIKFTETGSVKVVINFLREKADAV 1549 Query: 739 LR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 L+ V DTG+G+T + + + F Q S GTGLGL +++ + G + S Sbjct: 1550 LKFDVIDTGIGITPKQQSRLFQSFSQGDASVTRNYGGTGLGLAISQRLAGMLNGNISVSS 1609 Query: 797 TPAKGT 802 P +G+ Sbjct: 1610 KPGEGS 1615 >gi|268316575|ref|YP_003290294.1| multi-sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] gi|262334109|gb|ACY47906.1| multi-sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] Length = 1029 Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/256 (34%), Positives = 140/256 (54%), Gaps = 4/256 (1%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y M D++E + + +L AK+ AE+ S KS FLA +SHEIRTPLT I+GF+E++ ++ Sbjct: 769 YIGLMADVTELVEAERQLKAAKERAEEASRLKSAFLANMSHEIRTPLTGILGFAELL-DE 827 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 E+ + IDRS +L ++ND+LD+SKIE+ ++ L +P + + +A+ Sbjct: 828 ELETRQQEDLREFTHIIDRSARRLLTLLNDILDLSKIEANRLELKLQPTDVVDVARQAVQ 887 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 L+Q A EK + + N+ AD + Q+ +N+LSNAI FT G + + Sbjct: 888 LMQPLAEEKGLKLELHAEENLT-ARADPNRLHQVLVNLLSNAIKFTDE-GHVRVELGQKK 945 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 V+L V DTG G++ L +PF Q + +G GLGL + K ++D G+ Sbjct: 946 G-WVLLAVEDTGCGISPEFLPHLFEPFRQEHEGLTQKHQGVGLGLAIVKRLIDLMSGQIT 1004 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT EI+ P Sbjct: 1005 VQSEVGRGTRFEILLP 1020 >gi|257093441|ref|YP_003167082.1| integral membrane sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045965|gb|ACV35153.1| integral membrane sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 681 Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/246 (32%), Positives = 138/246 (56%), Gaps = 7/246 (2%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A+ AE+ S KSDF++R+SHE+RTPL AI+GF++V+ + PL + +Y I RS Sbjct: 291 ARDEAERASRAKSDFVSRMSHELRTPLNAILGFAQVLDRE---PL-QASHQDYVRLIMRS 346 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +L++VN +LD++KIE+G++ L + ++E +V A +K + A + Sbjct: 347 GQHLLELVNQVLDLAKIEAGRLTLEAIVFDFRQTIAEVGGIVAQRAADKGLDFIPKVAED 406 Query: 694 IP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 +P ++ D ++Q+ +N+ +NA+ FT +G + H ++ ++ +RDTG+GM Sbjct: 407 LPSHVIGDPTRLRQVLINLTANAVKFTEAGSVELAIDAH--DQRLLFSIRDTGIGMDEAA 464 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 L + PFGQ S + GTGLGL +A+ +V A G+ + S P G+ PL+ Sbjct: 465 LGRLFLPFGQGDESITRKYGGTGLGLMIARELVQAMGGEIEVDSKPGAGSCFRFSLPLHL 524 Query: 813 TSHPHD 818 P + Sbjct: 525 ADAPRE 530 >gi|265990697|ref|ZP_06103254.1| integral membrane sensor signal transduction histidine kinase [Brucella melitensis bv. 1 str. Rev.1] gi|265994529|ref|ZP_06107086.1| integral membrane sensor signal transduction histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|262765642|gb|EEZ11431.1| integral membrane sensor signal transduction histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|263001481|gb|EEZ14056.1| integral membrane sensor signal transduction histidine kinase [Brucella melitensis bv. 1 str. Rev.1] Length = 532 Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 139/245 (56%), Gaps = 3/245 (1%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++++ K E E K LA VSHE+RTPL +IIGFS+++ ++ G L + R EYA Sbjct: 236 DEIAMLKAELESERIGKGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAG 295 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +SG+ +L++VN +LD S++E+G ++ + +AV +++ A +K + Sbjct: 296 LIHQSGHYLLELVNAVLDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVDFCH 355 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---RVRDTG 745 N + ++AD R+V+QI LN+ +NA+ FT SGG + I + + V DTG Sbjct: 356 RVGNGVGELVADRRAVQQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTG 415 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ +L++ PF + NS EG+GLGL + K +V+ + G + S P +GT++ Sbjct: 416 IGIEPEDLQRIGTPFVRAGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVM 475 Query: 806 IIFPL 810 I PL Sbjct: 476 IRLPL 480 >gi|189425062|ref|YP_001952239.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189421321|gb|ACD95719.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 1109 Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/251 (33%), Positives = 135/251 (53%), Gaps = 8/251 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ KQ + +L AK A+ + KS+FLA +SHEIRTP+ ++G + +++ Sbjct: 844 DITHRKQSEQELIEAKLSADAANLAKSEFLANMSHEIRTPMNGVVGMTHLLRTTDL---- 899 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P +Y I+ S N + +++D+LD+SKIESGKM L SL + + +S Q + Sbjct: 900 TPEQEQYLANIEISANSLTTLISDILDLSKIESGKMVLESTAFSLRSCIQDILSSQQFFI 959 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS---TTHTSNE 735 +K I + T A+ +P ++ D +QI LNIL NAI FT G I++ H + Sbjct: 960 QQKAIRVTTEIADELPNTLIGDQLRTRQILLNILGNAIKFTEQGQINIVAELVEQHDRDI 1019 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V + +RDTG+GM+ E+ PF Q +S R G+GLGL + + + D G+ ++ Sbjct: 1020 HVRMAIRDTGIGMSEQLQEQIFAPFVQADSSTTRRYGGSGLGLAICRRLADLMGGRIWVE 1079 Query: 796 STPAKGTLIEI 806 S G+ I Sbjct: 1080 SREGAGSCFYI 1090 >gi|189425046|ref|YP_001952223.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189421305|gb|ACD95703.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 767 Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 108/363 (29%), Positives = 177/363 (48%), Gaps = 16/363 (4%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S++E D I I + G ILS N+ GY ++++L P ++ Q + Sbjct: 252 SMIENAGDAIYIHDHNGKILSANQVCCCQTGYTLDELLMSPVSLVDRQIDVQTLEEICRL 311 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSH 573 + R + T+ + K+ + + + LP + + DI+E K+ +++L Sbjct: 312 ATAAPARFPMTLKTVHTRKDGSSFPVEVRLSLLPAGDDVHFVAMVRDITERKRAEDELLR 371 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG--NPRYIEYANYID 631 AK AE ++ KS+FLA +SHEIRTP+ +IG ++++ RF L RY+E YI+ Sbjct: 372 AKAAAETANTTKSEFLANMSHEIRTPMNGVIGNAQLL---RFTDLTEEQSRYLE---YIE 425 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 ++ ++NDLLDISKIE+GKM L SL +++ + + K ++ T A Sbjct: 426 ADAKHLVSVINDLLDISKIEAGKMELEQTSFSLRGCINDLLKPMTPRIATKGLIFNTEIA 485 Query: 692 NNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST---THTSNEEVI-LRVRDTGV 746 N +P L D +KQI N++ NAI FT G I + H+ N+ + V DTG+ Sbjct: 486 NTVPDALTGDQLRLKQILRNLVGNAIKFTDQ-GSITLRVELLEHSENKALFYFSVIDTGI 544 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ LE+ PF Q +S + GTGLGL + + G + S+ G+ + Sbjct: 545 GIPQEALERLFTPFTQADSSVTRKFGGTGLGLSICNRLAGLMGGNISVESSEGAGSCFHV 604 Query: 807 IFP 809 P Sbjct: 605 TLP 607 >gi|94269400|ref|ZP_01291450.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93451231|gb|EAT02132.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 539 Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/245 (34%), Positives = 135/245 (55%), Gaps = 8/245 (3%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 SE ++ +L A E+ S KS+FLA +SHE+RTP+ AI GF+E++ PL N Sbjct: 174 SEIARQTAELRQANARLEESSRLKSEFLANMSHELRTPMNAITGFAELLAET---PL-NQ 229 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 EY I ++ +L+++ND+LD++KIE+GK++L P SLDE + ++ L A + Sbjct: 230 EQDEYCRTIRQAAAALLNLINDILDLAKIEAGKLDLETVPFSLDELLEGVRAMFTLAARK 289 Query: 682 KRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEV 737 K I I +P L D ++Q+ +N+L NAI FT GG ++ +T + Sbjct: 290 KGIEITIKRGEGLPDTLRGDSHRLRQVLINLLGNAIKFTEQGGVELEVAAGSTAADKVRL 349 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 VRD+G+G++ + LE + F Q S R GTGLGL + + +V+ G+ + S Sbjct: 350 FFAVRDSGMGISPHRLEAIFEKFTQADGSTTRRFGGTGLGLAICRQLVELMGGQIEVSSQ 409 Query: 798 PAKGT 802 KG+ Sbjct: 410 QGKGS 414 >gi|257484380|ref|ZP_05638421.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 283 Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 91/263 (34%), Positives = 152/263 (57%), Gaps = 19/263 (7%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 +S DIS+ + + L A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ Sbjct: 29 FSKITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMD 88 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 P I +I R+G +L ++N++LDI++IE+G ++L EPVSL + EA+ Sbjct: 89 --SPASQRPQI---GHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALV 143 Query: 674 LVQLYANEKRILIRTSFANNIPR------ILADLRSVKQIALNILSNAIHFTPSGGQIII 727 LV A + I ++ +P+ ++AD + + Q+ LN+LSNAI + GQ+ I Sbjct: 144 LVSPMAADANIELKA-----LPQLPDKLGVVADRQRLIQVLLNLLSNAIKYNRPEGQVRI 198 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 S+E V + V DTG G+ + + KPF ++ + + EGTGLGL L+K+M++ Sbjct: 199 EVEQ-SDERVTVSVIDTGYGIAPERIGQLFKPFERLDANPSV--EGTGLGLALSKSMLEM 255 Query: 788 NMGKFYIFSTPAKGTLIEIIFPL 810 G + +TPA+G + PL Sbjct: 256 MHGTLSVQNTPAEGCRFILELPL 278 >gi|256044286|ref|ZP_05447190.1| integral membrane sensor signal transduction histidine kinase [Brucella melitensis bv. 1 str. Rev.1] gi|256113119|ref|ZP_05453996.1| integral membrane sensor signal transduction histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|260563640|ref|ZP_05834126.1| sensor histidine kinase [Brucella melitensis bv. 1 str. 16M] gi|260153656|gb|EEW88748.1| sensor histidine kinase [Brucella melitensis bv. 1 str. 16M] Length = 609 Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 139/245 (56%), Gaps = 3/245 (1%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++++ K E E K LA VSHE+RTPL +IIGFS+++ ++ G L + R EYA Sbjct: 313 DEIAMLKAELESERIGKGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAG 372 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +SG+ +L++VN +LD S++E+G ++ + +AV +++ A +K + Sbjct: 373 LIHQSGHYLLELVNAVLDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVDFCH 432 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---RVRDTG 745 N + ++AD R+V+QI LN+ +NA+ FT SGG + I + + V DTG Sbjct: 433 RVGNGVGELVADRRAVQQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTG 492 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ +L++ PF + NS EG+GLGL + K +V+ + G + S P +GT++ Sbjct: 493 IGIEPEDLQRIGTPFVRAGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVM 552 Query: 806 IIFPL 810 I PL Sbjct: 553 IRLPL 557 >gi|163795290|ref|ZP_02189257.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159179276|gb|EDP63807.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 377 Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 146/252 (57%), Gaps = 3/252 (1%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DIS ++ + ++ +K+ E S K+DFLA +SHE+RTPL A+IGF+E++ +R G Sbjct: 122 RDISAQREAELEMRRSKESTELASRAKADFLALMSHELRTPLNAVIGFAELL--ERSGGT 179 Query: 619 GNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 P + EYA I SG +L ++ND+LD++++ + L + + L+ + + + + Sbjct: 180 MQPETLGEYAGLIRTSGEQLLRMINDILDLTRLGGNEAALPMDLIRLESITATCLRITEP 239 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 +A +++ + + ++P + A++ S++++ +++LSNA+ +P+G + ++ N + Sbjct: 240 FARPRQVTLVDAVPTDLPPLRAEVASLRRMIIHLLSNAVKVSPAGSTVTLTVERRPNNAL 299 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + + D G GM+ ++ A++PF Q + R G GLGLPL K +++ + G+ + S Sbjct: 300 SVIIVDDGPGMSEEQIAAAVQPFSQNDEVRSRRLTGAGLGLPLVKTLIELHGGRLVLDSE 359 Query: 798 PAKGTLIEIIFP 809 +GT + FP Sbjct: 360 LGRGTRARLEFP 371 >gi|254412939|ref|ZP_05026711.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196180103|gb|EDX75095.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1055 Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 113/374 (30%), Positives = 199/374 (53%), Gaps = 28/374 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +I E + GIA+ G ++ N+ L GY ++L+ F + + + LT+ Sbjct: 459 AIFEQAAVGIALGTPSGQLIRVNQRFCDLVGYEESELLQLSFPDITHPDDRAAELNDLTQ 518 Query: 516 ILSLDLRQTL--EKITLGSTKEEKLLSLRI-IIKKLPFSSCYSL-TMHDISEWKQEKNKL 571 +L+ R T EK + + + +++ + +++ + Y + + DI + KQ + L Sbjct: 519 LLA-GQRSTYSREKRFIRKDGQWQWVNVAVSLVRTWMDTPNYIIGVVEDIQQRKQTEVAL 577 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 A AE + KS+FLA +SHE+RTPL AI+GF++++ R L N +Y I Sbjct: 578 QQALDAAEAANHGKSEFLANMSHELRTPLNAILGFTQLMA--RDASL-NQDQQDYLGIIT 634 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 RSG +LD++N++L++SKIE+G+++L F+ SL ++++E + L L + ++ RT Sbjct: 635 RSGEHLLDLINNVLNMSKIEAGRISLSENSFDLYSLVDSIAEMLRLKALSKGVQLMVERT 694 Query: 689 SFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----------E 736 + N+P +AD ++QI +N++ NA+ FT S G++I+ S+ Sbjct: 695 A---NVPNYGMADEGKLRQILINLVGNAVKFT-SQGRVILRVQEISDRITAPTNTDTQSR 750 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + V DTGVG+ EL+ + F Q SQ+ + GTGLGL +++ V G I S Sbjct: 751 LFFEVEDTGVGIPPDELDTLFQAFVQTKTSQRSQS-GTGLGLAISRRFVQLMGGDITINS 809 Query: 797 TPAKGTLIEIIFPL 810 TP +GTL++ P+ Sbjct: 810 TPGQGTLVKFDIPI 823 Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 36/184 (19%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 D ++ + ++ +L +I+ +TSDGI I++R+G +L TN A + L VE++L F Sbjct: 336 DCKLTEARLRQSEARLNAIVSSTSDGIMIVDRQGQVLFTNPAAANLLNQDVENLLNYNFG 395 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS---LRIIIKKLPFSSCYS 555 L + + QT E LG + + LS + ++ + S + Sbjct: 396 ------------------LPVGVNQTTE---LGIVRADGQLSFAEMSVVETEWEGESVFE 434 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF-LARVSHEIRTPLTAIIGFSEVIKNQR 614 + + D++E ++ + L E E ++ F A V + TP +I NQR Sbjct: 435 ICLRDVTERQRAEAALR------ESEERFRAIFEQAAVGIALGTPSGQLIRV-----NQR 483 Query: 615 FGPL 618 F L Sbjct: 484 FCDL 487 >gi|117920460|ref|YP_869652.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3] gi|117612792|gb|ABK48246.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3] Length = 1119 Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 109/369 (29%), Positives = 186/369 (50%), Gaps = 35/369 (9%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-----EQNTPSV 508 L + L A+ D + I+ G ++ N A ++LFGY E+ + + +Q Sbjct: 362 LLATLAASQDCLITIDMSGKVIEFNLAATRLFGYSREEAVGALLEDLIIPEDKQQGHKRG 421 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEWKQ 566 + Y L + +E L K L+ L ++ +L ++ + DISE K Sbjct: 422 IERYRRTGEGKMLNKRVE--LLARCKAGNLIPIELEVVPIQLGDEVLFTAFLRDISERKA 479 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI------KNQRFGPLGN 620 + KL AK+ AE+ S KS FLA +SHEIR+PL AI+G E++ K+QR Sbjct: 480 NEQKLQQAKEQAEQGSKVKSRFLATMSHEIRSPLNAILGGVELLLDSSLSKDQRI----- 534 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQL 677 +AN +G+ +L +ND+LD SKIE+G+M L FEP D+ V++ + +++ Sbjct: 535 -----HANIAREAGSALLHTINDILDFSKIEAGQMVLESHEFEP---DKLVAQVLQILEP 586 Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTS 733 A EK + + + N+PR ++ D + ++Q+ N++ NAI FT SG ++ I H + Sbjct: 587 KAFEKGLELVSFVNRNVPRTVVGDQQRLRQVLHNLVDNAIKFTASGTITVEMWIPDNHQT 646 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ RV D+G+G++ K K F Q+ ++ +GTGLGL + ++ G Sbjct: 647 EVQLYCRVTDSGIGISAEAQSKLFKEFSQVHDTHNTNYKGTGLGLAICSELITMMGGTIE 706 Query: 794 IFSTPAKGT 802 + S +G+ Sbjct: 707 LQSELGQGS 715 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 2/66 (3%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + VD R + +E ++L +ILE+ DG IIN GII N AVS+LFGY +++ + Sbjct: 218 DKVDAR--TKALEAANIRLNTILESAVDGFVIINEFGIITDINPAVSRLFGYAHNELIGQ 275 Query: 496 PFTVFL 501 ++F+ Sbjct: 276 NVSIFM 281 >gi|284038192|ref|YP_003388122.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283817485|gb|ADB39323.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 1226 Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 109/384 (28%), Positives = 191/384 (49%), Gaps = 20/384 (5%) Query: 443 NKRKMEIEVMQ----LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 N+++ EI Q I E D A ++R+G I + +V K GY +++L + T Sbjct: 569 NRKRAEIATRQSEEKFRGIFENLQDIYARVDRKGRITMISPSVFKRMGYTPDEVLGQEIT 628 Query: 499 -VFLEQNTPSVMNHYLTEI-LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYS 555 F+++N + H + ++ + LR + E + + +++ + P S S + Sbjct: 629 RFFIDEND---IRHAMFKLGRNRSLRNFEASMRRKDGSERQFMFNMLMLNEGPGSDSVVA 685 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + DI+E K++ +L AK AE+ K FLA +SHEIRTP+ +IG +++ + + Sbjct: 686 VLARDITELKRQSAELVKAKNEAERSLKVKEQFLANMSHEIRTPMNGVIGMIDLLNDTKL 745 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + Y + RS +L+I+ND+LD+SKIE+GKM LH PV+ E + I+L Sbjct: 746 ----DEEQRSYVKTVKRSSETLLNILNDILDLSKIEAGKMVLHEAPVAFKEIFEKLIALF 801 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 AN K + +++P ++AD + Q+ N+ SNAI FT + G I + + S Sbjct: 802 GQQANSKNNELTYHLGSDLPTFVIADQTRLLQVLSNLTSNAIKFTEN-GTIRVEASLISK 860 Query: 735 E----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + V+D+G+G++ + F Q+ S + GTGLGL ++K + G Sbjct: 861 RGKFNRIRIEVKDSGIGISQQNINLLFNSFSQVDTSSRKSFGGTGLGLAISKELASLMKG 920 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTS 814 + + ST G+ L +TS Sbjct: 921 EIGVDSTVGMGSTFWFTIELKETS 944 >gi|119898741|ref|YP_933954.1| putative two-component system sensor protein [Azoarcus sp. BH72] gi|119671154|emb|CAL95067.1| putative two-component system sensor protein [Azoarcus sp. BH72] Length = 916 Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 99/368 (26%), Positives = 191/368 (51%), Gaps = 24/368 (6%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +++A+S + I + G +L NRA ++L GY ++I P L + V+ + + Sbjct: 411 VIDASSQCVGIADGTGRLLYQNRAHARLLGYEDDEIAGMPVARLLPLDDGGVLAAQIFGM 470 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLPFSSCYSLTMH-DISEWKQEKNKLSH 573 + D R + ++ + S I +K + Y + D +E +N+L+ Sbjct: 471 VQ-DARGLVGQLPMRRKDGTVFTSFSNIGFVKDARGQTQYIFNIFTDFTEELARRNELAE 529 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK-------NQRFGPLGNPRYIEY 626 AK AE+ + KSDFL+ +SHE+RTP+ A++GF+++++ +QR + Sbjct: 530 AKDTAERANQAKSDFLSSMSHELRTPMNAVLGFAQLLECDDTLTADQR----------DN 579 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I ++G +L ++N++LD+++IE+G+++L EPV+L EAV + L+Q A + I++ Sbjct: 580 VAEILKAGGHLLTLINEVLDLARIEAGRIDLSLEPVALREAVDDCRQLIQPLAAARAIVL 639 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 S + + + AD +KQ+ LN+LSNA+ + GG++ ++ + L V DTG Sbjct: 640 EMSLPDELV-VRADRTRLKQVLLNLLSNAVKYNREGGRVSLA-AQCREGRLRLSVSDTGA 697 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ + +PF ++ ++ EGTG+GL + + +++ G+ S +G+ I Sbjct: 698 GIAPERMAALFEPFERL-GAEASAIEGTGIGLTITRRLMELMGGEIGAESRVGEGSTFWI 756 Query: 807 IFPLYDTS 814 L D + Sbjct: 757 ELFLDDPA 764 >gi|83643743|ref|YP_432178.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83631786|gb|ABC27753.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 834 Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 90/251 (35%), Positives = 140/251 (55%), Gaps = 13/251 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I KQ + +L AK+ AE S KS F+A VSHEIRTP+ AI+G +++ Sbjct: 197 EIDARKQTEKELILAKEQAETASEAKSFFVANVSHEIRTPMNAILGMCYLMQRTDL---- 252 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + R ++ N I+ + +L ++ND+LD SKIE+GK+ + P SLD + + + A Sbjct: 253 DARQTDFLNRINVAAKSLLALINDILDFSKIEAGKLKIENRPFSLDGVLQQLAQMEAAKA 312 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 EK++ + S + ++P R+ D + QI LN+++NAI FT G +I+++ E Sbjct: 313 AEKQLELIFSVSQDVPQRLKGDPDRLGQILLNLVNNAIKFTERG-KIVVTVRLYKKEAGD 371 Query: 737 ---VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 V+LR +RDTGVG+ L + F Q+ + R EGTGLGL + K +V GK Sbjct: 372 EGPVMLRFSIRDTGVGIAPKNLSRLFAAFSQVDSRLSRRYEGTGLGLAICKQLVQLMGGK 431 Query: 792 FYIFSTPAKGT 802 + STP KG+ Sbjct: 432 IWAKSTPGKGS 442 >gi|83310211|ref|YP_420475.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82945052|dbj|BAE49916.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 687 Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 89/255 (34%), Positives = 132/255 (51%), Gaps = 3/255 (1%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K + + AK+ AE + KS FLA +SHE+RTPL AIIG+SE+++ + LG Sbjct: 178 DITERKWAEEEAHRAKQAAEAANQAKSSFLANMSHELRTPLNAIIGYSEMLQEE-MEDLG 236 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 I I +G +L ++ND+LDISKIE+GKM+L E + V++ ++ + Sbjct: 237 QDDLIPDLAKIHSAGRHLLTLINDVLDISKIEAGKMDLFVEAFEIAPMVADVVATISPLI 296 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + + A I + ADL V+Q N+LSNA FT G I +T E + Sbjct: 297 QKNGNTLVVDGAGEIGAMEADLTKVRQTLFNLLSNASKFTSDG--TITLSTRRQGEWIEF 354 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+GM EL++ + F Q S + GTGLGL +++ G + S P Sbjct: 355 AVADTGIGMAPAELDRLFQAFSQADASTTRKFGGTGLGLAISRTFCRMMGGDIAVASEPG 414 Query: 800 KGTLIEIIFPLYDTS 814 +GT + P S Sbjct: 415 RGTTFTVRLPAVSAS 429 >gi|159898358|ref|YP_001544605.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159891397|gb|ABX04477.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 569 Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 86/236 (36%), Positives = 136/236 (57%), Gaps = 5/236 (2%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A+++AE+ + KS FLA +SHE+RTPL AII +E I FGPL N + Y + + + Sbjct: 198 AQRLAEQANLRKSQFLATMSHELRTPLNAIINMTEFID--WFGPL-NSQQKSYQDQVRGA 254 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +L ++ND+LD+SKIE+G++ L F V + E + V+ A K + I A+ Sbjct: 255 GEHLLHLINDILDLSKIEAGRIELQFGQVDCGDIAQEVLETVRPLAESKGLQIAYHHADG 314 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 AD +++KQI LN+LSNAI FT + GQI ++ ++ V + V DTG+G+ + Sbjct: 315 TGLAWADSKAIKQIVLNLLSNAIKFTET-GQIRVALEFSAT-TVNISVHDTGIGIAREQQ 372 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + F QI ++ EGTGLG+ + K +VD + G + S +GT ++ P Sbjct: 373 QFIWESFRQIQSADDREYEGTGLGMSITKQLVDLHGGNITVESELGQGTQFQVCLP 428 >gi|306842152|ref|ZP_07474821.1| integral membrane sensor signal transduction histidine kinase [Brucella sp. BO2] gi|306287739|gb|EFM59170.1| integral membrane sensor signal transduction histidine kinase [Brucella sp. BO2] Length = 522 Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 139/245 (56%), Gaps = 3/245 (1%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++++ K E E K LA VSHE+RTPL +IIGFS+++ ++ G L + R EYA Sbjct: 226 DEIAMLKAELESERIGKGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAG 285 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +SG+ +L++VN +LD S++E+G ++ + +AV +++ A +K + Sbjct: 286 LIHQSGHYLLELVNAVLDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCH 345 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 N + ++AD R+V+QI LN+ +NA+ FT SGG + I + + V DTG Sbjct: 346 RVGNGVGELVADRRAVQQILLNLATNAVKFTQSGGCVTIDAARVMADGGPMLEFSVSDTG 405 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ +L++ PF + NS EG+GLGL + K +V+ + G + S P +GT++ Sbjct: 406 IGIDLEDLQRIGTPFVRAGNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVM 465 Query: 806 IIFPL 810 I PL Sbjct: 466 IRLPL 470 >gi|157376000|ref|YP_001474600.1| Signal transduction histidine kinase-like protein [Shewanella sediminis HAW-EB3] gi|157318374|gb|ABV37472.1| Signal transduction histidine kinase-like protein [Shewanella sediminis HAW-EB3] Length = 2213 Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/248 (33%), Positives = 141/248 (56%), Gaps = 8/248 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI++ KQ + +L AK++AE + KSDFLA +SHEIRTP+ AIIG S + Sbjct: 1456 QDITDRKQAEEELMRAKRVAENATRAKSDFLANMSHEIRTPMNAIIGMSHLALQTGL--- 1512 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + +Y N I + +L ++ND+LD SK+E+GKM + +P +L++ + + L+ + Sbjct: 1513 -DRKQRDYINKIQSASESLLALINDILDFSKVEAGKMEIERKPFNLNDTLDKLAQLITVK 1571 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEE 736 EK++ + ++P ++ D + QI +N+ +NA+ FT G ++ I +E+ Sbjct: 1572 TREKKLELLIDTHKDVPCGLIGDSLRLGQILINLTNNAVKFTEKGEVVVSIEKVCVDDEQ 1631 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V L+ V+DTG+GMT ++ K + F Q S + GTGLGL ++K + + G + Sbjct: 1632 VTLKFTVKDTGIGMTKEQMGKLFQSFSQADASTTRKYGGTGLGLTISKKLTELMGGAISV 1691 Query: 795 FSTPAKGT 802 ST KG+ Sbjct: 1692 ESTFGKGS 1699 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 44/211 (20%), Positives = 96/211 (45%), Gaps = 16/211 (7%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 E+++ R+ +R M+L SI+E +DGI ++N GI+ + + A +FG+ +++ Sbjct: 1185 EELEERVKER-----TMRLRSIIENAADGIIVMNSRGIVQNFSPAAETIFGFCASEVVGN 1239 Query: 496 PFTVFLEQNT----PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 + + + T + HY+ ++ + + +T E + L E + L + + Sbjct: 1240 NIKMLMPEPTRKEHDGYLKHYIDDVKTKVVGKTREVVGLRKNGETFDMDLAVGEFFIDGE 1299 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA-----IIGF 606 ++ + DI+E K+ +L +K+ EK K+ ++ + T I F Sbjct: 1300 HLFTGMVRDITERKRMDKELRLSKEDLEKTLYEKTSLEEKLKQNVAYMTTLLENLPIAVF 1359 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 ++ +KN L N +E + +SG ++ Sbjct: 1360 AKDVKNDYRFTLWNHVAVEIFGF--KSGQII 1388 >gi|21227050|ref|NP_632972.1| sensory transduction histidine kinase [Methanosarcina mazei Go1] gi|20905373|gb|AAM30644.1| Sensory transduction histidine kinases [Methanosarcina mazei Go1] Length = 397 Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 90/270 (33%), Positives = 150/270 (55%), Gaps = 9/270 (3%) Query: 543 IIIKKLPFSSCYSLTMH--DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 +++K+ C MH +I+ K+ + L AKK AE + K+ F+ +SHE+RTPL Sbjct: 110 VLVKRKGGWECL---MHTCNINGQKELETTLLRAKKDAEATNRAKNSFIMNMSHELRTPL 166 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 ++IGFS+++ FGP+ N + +Y N I SG +L+I+N+LLDIS++E+G+ L +E Sbjct: 167 NSVIGFSDLLLEGAFGPM-NTKQSKYVNNILISGKNLLEIINNLLDISRLEAGEKTLKYE 225 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 V + + E + A+ K+I + ++ + AD+ ++QI N++SNAI FTP Sbjct: 226 DVDVASLIGEVRMNLLSPASVKKINVELKIDPSVGNVEADISKLRQILYNLVSNAIKFTP 285 Query: 721 SGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 + G+++IS E V+ ++V D G+G++ EK PF Q +S G GLGL Sbjct: 286 ARGKVVISACK--KEGVLEVKVSDNGIGISEDSYEKIFMPFTQADSSAARGYGGAGLGLF 343 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + VD + G + S KG+ P Sbjct: 344 IVRNFVDLHGGDISVNSEVGKGSTFTFTIP 373 >gi|152992222|ref|YP_001357943.1| hypothetical protein SUN_0627 [Sulfurovum sp. NBC37-1] gi|151424083|dbj|BAF71586.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 535 Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 90/251 (35%), Positives = 141/251 (56%), Gaps = 10/251 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 +++Q L+ +KK+AE+ + KS FLA +SHEIRTPL AI GF ++++ + Sbjct: 144 QYRQMHEDLARSKKLAEEATEQKSRFLANMSHEIRTPLNAITGFIKLLEENE----KDET 199 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD--EAVSEAISLVQLYAN 680 ++Y ++ S +L I+ND+LDISKIESG NL EP + + E + L Q A Sbjct: 200 KLKYLKIVENSSESLLQIINDILDISKIESG--NLMIEPYNFNPYEDLIMIAELFQTRAA 257 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 EK I+ + + NN+P+IL D +KQI N+LSNAI FTP G ++ N ++ + Sbjct: 258 EKNIIFQIRYNNNMPKILFGDALRIKQIFTNLLSNAIKFTPEGS-VVKCIIWYKNGQLNI 316 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 RV+D G+G++ + + +PF Q +S GTGLGL ++ + G + S Sbjct: 317 RVKDYGIGISEKKQKAIFEPFMQADSSTVRNYGGTGLGLSISLELTRMLGGTLTLKSEKE 376 Query: 800 KGTLIEIIFPL 810 KG++ + PL Sbjct: 377 KGSIFTLSIPL 387 >gi|34556655|ref|NP_906470.1| hybrid sensory histidine kinase [Wolinella succinogenes DSM 1740] gi|34482369|emb|CAE09370.1| HYBRID SENSORY HISTIDINE KINASE [Wolinella succinogenes] Length = 538 Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 114/358 (31%), Positives = 168/358 (46%), Gaps = 37/358 (10%) Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP-SVMNHYLTEILSLDLRQ 523 ++I + G I+ N + ++ GY E++L P ++F +TP V + IL Sbjct: 151 LSISDLSGNIIFANEKLCEITGYTREELLGHPHSMFRHPDTPKEVFERLWSTILE----- 205 Query: 524 TLEKITLGSTKEEK--------------LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569 KI G K K L+ I + CY +I+ + +N Sbjct: 206 --GKIWKGMLKNRKKNGEPYYVDATVVPLMDENNQITQF-LGLCY-----EITSLIRAQN 257 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 L A K AE+ K FLA +SHE+RTPL IIGF ++ + N EY Sbjct: 258 ALRVALKRAEEADRVKGVFLANMSHEMRTPLNGIIGFGRLLLEENL----NQEQREYVEI 313 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 ID+SG +L I+ND+LD+SKIESGK L P+ L E + ++ A EK + + Sbjct: 314 IDKSGEHLLGIINDILDLSKIESGKFELESLPMKLSEELRAVADFCEVKAREKGVKLLCL 373 Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST-THTSNEEVI---LRVRDT 744 F I+ D+ +KQ+ N+L NAI FTP GG++ + EE I V DT Sbjct: 374 FKEIEGLIIQGDVMRLKQVTANLLGNAIKFTPEGGEVRLGVEVLEEREEAIALDFSVSDT 433 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G+ LEK +PF Q +S GTGLGL +++ +V G+ S KG+ Sbjct: 434 GIGIAPEYLEKIFRPFEQAESSTARNYGGTGLGLSISQELVRLMGGEMRCQSEEGKGS 491 >gi|298491151|ref|YP_003721328.1| histidine kinase ['Nostoc azollae' 0708] gi|298233069|gb|ADI64205.1| histidine kinase ['Nostoc azollae' 0708] Length = 613 Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 83/265 (31%), Positives = 144/265 (54%), Gaps = 7/265 (2%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + I W+Q +L++ + E+ + K+ FLA SHEIRTPL++IIGF+ ++ Q + P Sbjct: 205 LRQIQFWQQRCQQLANFNQELERTNQLKNQFLANTSHEIRTPLSSIIGFTHLLLAQGYEP 264 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 R+ EY + I SG +LD++ND+LD+SKIE+ ++ + +E V + ++LV+ Sbjct: 265 -ERQRHQEYLHIIQSSGKHLLDLINDILDLSKIEANQLEVQWEIVEVSTLCRNVLALVKE 323 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A K + +R N++ ++ D +KQ+ LN+L NA+ FT G S +++ Sbjct: 324 KAANKGLKLRLEIENDVTNLVVDPLRLKQMLLNLLFNAVKFTNLGS----VGLRVSIKDL 379 Query: 738 ILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 LR V DTG+G++ + +P+ QI N EG+GLGL + + + + + G + Sbjct: 380 YLRFSVWDTGIGISQENQTRLFRPYSQIINPGAGSNEGSGLGLVVTQQLAEIHGGYLELE 439 Query: 796 STPAKGTLIEIIFPLYDTSHPHDCI 820 S +G+ I+ PL + I Sbjct: 440 SAIDQGSCFTIVLPLKPQGRASEAI 464 >gi|117926443|ref|YP_867060.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610199|gb|ABK45654.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1245 Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 86/268 (32%), Positives = 149/268 (55%), Gaps = 9/268 (3%) Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 Y +T DI+ + + ++ AK+IAE+ + KSDFLA +SHEIRTP+ AIIG S + Sbjct: 401 VYGVT-QDITTRRAAEREILRAKEIAEEATQAKSDFLANMSHEIRTPMNAIIGMSYLALQ 459 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + + +Y N I + N +L I+ND+LD SKIE+GK+++ P L + + Sbjct: 460 TEL----SRKQQDYINKIHNAANALLGIINDILDFSKIEAGKLDMENLPFLLSDTLESLT 515 Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTT 730 +L+ + A EK + + + +P ++ D + QI +N+++NA+ FT +G ++ + Sbjct: 516 NLIAVKAREKGLELLIAMDPAVPDGLIGDDLRLGQILVNLVNNAVKFTDTGEIVVRVKQV 575 Query: 731 HTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 ++ EV+L+ + D+G+GMT ++ K F Q S + GTGLGL ++K + + Sbjct: 576 EANDREVMLQFSISDSGIGMTEAQVAKLFNSFSQADASTTRKYGGTGLGLTISKKLTEMM 635 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 GK ++ STP G+ ++HP Sbjct: 636 HGKIWVESTPGVGSTFLFTARFGLSTHP 663 >gi|212710083|ref|ZP_03318211.1| hypothetical protein PROVALCAL_01136 [Providencia alcalifaciens DSM 30120] gi|212687290|gb|EEB46818.1| hypothetical protein PROVALCAL_01136 [Providencia alcalifaciens DSM 30120] Length = 1042 Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 88/255 (34%), Positives = 145/255 (56%), Gaps = 13/255 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ + + +L+HAK++AE+ + KS+FLA +SHEIRTPL IIG E+++N P Sbjct: 451 DITIQAETEKQLNHAKRLAEEANQAKSNFLATMSHEIRTPLYGIIGTLELLENTALSP-- 508 Query: 620 NPRYIEYANYIDR---SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + ++IDR + L++ ++ D+LDISKIE+ ++++ L + + + L Q Sbjct: 509 -----KQKHFIDRMSTTSQLLMHLIGDILDISKIEANQIHIQHISFDLLDLIQHTVQLYQ 563 Query: 677 LYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A +K++L+ NI + + D ++QI N+LSNAI FT G++ + + +N Sbjct: 564 GLAQQKKLLLFAIIDPNIYAVRIGDAARLQQIFGNLLSNAIKFT-HNGKVTVELRNGTNN 622 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +IL V DTGVG++ + EK +PF Q + Q G GTGLGL + +V G+ + Sbjct: 623 NIILFVNDTGVGISQEQQEKLFEPFYQAHSGQHTYG-GTGLGLFICAELVKLMGGEISVT 681 Query: 796 STPAKGTLIEIIFPL 810 S G+ +I PL Sbjct: 682 SNLTVGSSFQITLPL 696 >gi|284035554|ref|YP_003385484.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283814847|gb|ADB36685.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 1309 Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 87/250 (34%), Positives = 138/250 (55%), Gaps = 11/250 (4%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+E ++++L AK +AE+ S KS+FLA +SHEIRTPL +IGF++++ P Sbjct: 644 QDITEICLQRDELKKAKLVAEQASQAKSEFLANMSHEIRTPLNGVIGFTDLVLKTTLTPT 703 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + +Y +++S N +L +ND+LD SKIE+GK+ L E V + E S+A ++ Sbjct: 704 QH----QYLTIVNQSANALLTTINDILDFSKIEAGKLELTIEKVDIYELTSQAAEIITYQ 759 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736 A K + + + A ++PR I D +KQ+ +N+L NA+ FT G+I + T TS E Sbjct: 760 AQTKGLEVLLNVAPDVPRFIYTDSVRLKQVLVNLLGNAVKFTQQ-GEIELKVTATSVSEP 818 Query: 737 ----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + VRDTG+G+ +K F Q S + GTGLGL +A ++ + Sbjct: 819 GEGAIRFAVRDTGMGIRADMQQKIFHAFSQEDPSTTKKFGGTGLGLTIANKLLGLMGSQL 878 Query: 793 YIFSTPAKGT 802 + S P G+ Sbjct: 879 ELISEPGAGS 888 >gi|153006633|ref|YP_001380958.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152030206|gb|ABS27974.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 725 Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 135/247 (54%), Gaps = 11/247 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP-RY 623 ++E++ +HA E + K +FLA +SHE+RTPL AI+G+S ++++ G+P R Sbjct: 311 RREQDARAHA----ESANRAKDEFLATLSHELRTPLNAILGWSGLLRDAG----GDPERL 362 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 IDR+G + +V+DLLD+S+I +G++ + V L V +AI V+ A K Sbjct: 363 ARGLAVIDRNGRTLAQLVSDLLDMSRIAAGRIEVEHADVDLLAVVDDAIEAVRAAARAKG 422 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + I S +PR++ D ++Q+A N++SNA+ FTP GG + + V L V+D Sbjct: 423 VAISRSAGPELPRVVGDAGRLRQVAWNLVSNAVKFTPPGGSVDVRLGREGGAAV-LEVKD 481 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGT 802 TGVGM+ L PF Q S R G GLGL + K +V + G + S P +G+ Sbjct: 482 TGVGMSRDFLPIMFDPFVQAEGSSVRRHGGLGLGLAITKQLVALHGGTIHAESDGPGRGS 541 Query: 803 LIEIIFP 809 ++ P Sbjct: 542 TFRVLVP 548 >gi|309790318|ref|ZP_07684885.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308227652|gb|EFO81313.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 987 Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 96/281 (34%), Positives = 156/281 (55%), Gaps = 10/281 (3%) Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 GS E +LL+L + + P L + +I+E K+ + L AK+ A+ + KS FLA Sbjct: 433 GSVIEAELLALAFVDEDTP---ATELIVRNITERKEVERTLREAKEAADSANRAKSQFLA 489 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SHE+RTPLT+IIG++E++ N+ P+ N + I +G +L I+ND+LD+SKI Sbjct: 490 TMSHELRTPLTSIIGYAELL-NRALTPIANDEVMHDLRRIQVAGAHLLAIINDVLDLSKI 548 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQ--LYANEKRILIRTSFANNIPRILADLRSVKQIA 708 E+G M +H PV LD+ V + VQ + N ++L++ ++ ++ D V+QI Sbjct: 549 EAGHMQVHPAPVRLDKLVQAVVDTVQPVIVRNTNQLLVQG--LDDAGLMVTDEVHVRQIL 606 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 LN+LSNA FT + GQI + + T E V V DTG+G+ + ++ + F Q+ S Sbjct: 607 LNLLSNAGKFT-TNGQITLRISGTP-EMVYFAVHDTGIGIHPEQAKQLFRDFVQVDASTT 664 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + GTGLGL L++ + G + S +G+ + P Sbjct: 665 RKYGGTGLGLALSRRLARLLGGDITLESALGEGSTFTLSLP 705 >gi|34580746|ref|ZP_00142226.1| histidine kinase sensor protein [Rickettsia sibirica 246] gi|28262131|gb|EAA25635.1| histidine kinase sensor protein [Rickettsia sibirica 246] Length = 468 Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 84/238 (35%), Positives = 137/238 (57%), Gaps = 6/238 (2%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 EK SS + F +SHE+RTPL AIIGFSE++ ++R + Y I+ +G + Sbjct: 233 VEKTSSSNTKFFTNISHELRTPLNAIIGFSEILMSER----DAEKSKNYIKDINDAGKHL 288 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ND+LD+SK + K+ + + L++ + ++ LV+ A++ + + + I Sbjct: 289 LSMINDILDLSKASADKLKVDSIDLDLNKLIRSSLILVKTRADQAEVALISRLPKEHVVI 348 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKA 756 AD + +KQ+ LN+LSNA+ FT GG + I+ +++ ++V DTG+G+ ++ K Sbjct: 349 KADPKRLKQVFLNLLSNAVKFTNPGGSVTIALEKDELAKLVYIKVIDTGIGIEEKDIPKT 408 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + FGQI + + EGTGLGLPL K +V+ GKF + S +GT I I F YD S Sbjct: 409 LSAFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQSKINEGTTITITFT-YDCS 465 >gi|239626628|ref|ZP_04669659.1| two-component system protein sensor histidine kinase [Clostridiales bacterium 1_7_47_FAA] gi|239516774|gb|EEQ56640.1| two-component system protein sensor histidine kinase [Clostridiales bacterium 1_7_47FAA] Length = 961 Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 86/264 (32%), Positives = 142/264 (53%), Gaps = 9/264 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E +Q++ L A A+ S+ KS FL+ +SH+IRTP+ AIIG + + R Sbjct: 427 EEEQQRLALESALDSAKAASNAKSRFLSNMSHDIRTPMNAIIGMTAIAAAH---IDDRDR 483 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +E I+ SG +L ++ND+LD+SKIE+GK+++ EP + E V++A L++ AN Sbjct: 484 VLECLKKINLSGKHLLSLINDVLDMSKIENGKLSMRDEPFNFPELVADAAELIRSQANAG 543 Query: 683 RILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-----EE 736 R+ + + ++ D ++Q+ +NILSNA+ +TP GG + I + Sbjct: 544 RLAMDVCLSPMKHENVVGDPLRMRQVCINILSNAVKYTPPGGFVRIEAWQEESPVLGYAN 603 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + R DTGVGM LE +PF + + +R GTGLG+ + K ++D G ++ S Sbjct: 604 YVFRCTDTGVGMEPSFLEHIFQPFERARDHAGMRVAGTGLGMAITKNIIDLMNGDIHVES 663 Query: 797 TPAKGTLIEIIFPLYDTSHPHDCI 820 +P KG++ I PL P + + Sbjct: 664 SPGKGSVFTISIPLKLQDAPKEQV 687 >gi|118580477|ref|YP_901727.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118503187|gb|ABK99669.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 738 Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 110/370 (29%), Positives = 187/370 (50%), Gaps = 30/370 (8%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL--RKPFTVFLEQNTPSVMNHYL 513 S++E + D + IN + I+ N A +LFG L + PF + + V+ + Sbjct: 132 SLVELSPDAV-FINLKNRIVFVNPAAVRLFGAASAQQLLGKSPFD-LMHPDCHDVIRARI 189 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIKKLPF----SSCYSLTMHDISEW 564 + + + Q +E EK+L L + + P + + + + DIS+ Sbjct: 190 EQQRAGQIAQLIE---------EKVLRLDSSVIDVEVSAAPLNTEEGTAFQVILRDISDR 240 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ + L+ AK+ AE S KS+FLA +SHEIR+P+ I+G +++++ + L + + Sbjct: 241 KRAEQALATAKEQAEAASRAKSEFLANMSHEIRSPMNGIMGMAQLME---YTELTDEQR- 296 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EY N I S + +L ++N++LD+SKIE+GK+ L SL ++ + + ++K + Sbjct: 297 EYLNVIRSSSHGLLSLINNILDLSKIEAGKIELERSDFSLRASIDDIVKAHLSQIHDKGL 356 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR-- 740 IRT P ++ D +KQI LN+L NAI FT GG I ++ + +E V LR Sbjct: 357 TIRTDIPAAAPDTLIGDQLRLKQILLNLLGNAIKFTCRGGIGISVAVSERRDERVRLRID 416 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+G+ +E+ KPF Q +S + GTGLGL + + + GK + S Sbjct: 417 VTDTGIGIPTDAMERIFKPFTQADSSTTRQYGGTGLGLSICSRLAELMDGKITVESREGS 476 Query: 801 GTLIEIIFPL 810 G+ + P Sbjct: 477 GSTFSVHLPF 486 >gi|291571976|dbj|BAI94248.1| putative PAS/PAC sensor protein [Arthrospira platensis NIES-39] Length = 959 Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 114/385 (29%), Positives = 183/385 (47%), Gaps = 20/385 (5%) Query: 442 INKRKMEIEVMQLC-----SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 I +R+ E EV++ SI E ++GI +G +S N A++++ GY + L Sbjct: 544 IERRRTE-EVLRQTEAKYRSIFENAAEGICQTTPDGRYISANPALARILGYDSPEDLIAN 602 Query: 497 FTVFLEQ--NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFSS 552 T Q P+ ++ I + E +S R + + Sbjct: 603 LTDVSTQLYVKPTRRAEFVAAIAKSSVISGFESQVYRQDGTTIWISENARAVFDAIGELV 662 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 CY T+ DI+E K+ L AK+ AE + KS FLA +SHE+RTPL AIIG+SE++ Sbjct: 663 CYEGTVEDITEGKRAAEALERAKEAAETANRAKSTFLANMSHELRTPLNAIIGYSEILLE 722 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + + I +G +L ++ND+LDISKIE+G+M+L E + + + Sbjct: 723 EAEELGYED-IVPDLERIYTAGKNLLTLINDILDISKIEAGRMDLFVEAFDVSGLLESVM 781 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 Q ++ + +NI + AD+ V+QI LN+LSNA FT + G+I I + Sbjct: 782 GTAQPLMSKNNNTLTVDCPDNIGIMYADVTKVRQILLNLLSNAAKFT-TDGKIKIEVSRV 840 Query: 733 SN--------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 S+ V +V DTG+GM+ + E+ +PF Q S R GTGLGL ++ Sbjct: 841 SSLPYSQESGSVVEFKVHDTGIGMSAEQQEQLFQPFTQGDASTTRRYGGTGLGLAISDRF 900 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809 G + ST +G+ +++ P Sbjct: 901 CQMMGGNIQVQSTLGEGSTFKVVIP 925 >gi|219850111|ref|YP_002464544.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219544370|gb|ACL26108.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 880 Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 105/393 (26%), Positives = 197/393 (50%), Gaps = 51/393 (12%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + + E Q+ +IL++ DG+ + + G ILS N+A ++ P+E++L N Sbjct: 506 RQQRETSQITAILQSLLDGVLVCDIHGSILSVNQAAGRILHRPIEELLL--------WNM 557 Query: 506 PSVMNHYL-TEILSLDLRQTLEK--ITLGSTKEEKL----------LSLRIIIKKLPFSS 552 ++ H L T L L + + T G+ + +SL ++ + + Sbjct: 558 HDLIQHCLSTHAADLPLEELFRRPLTTDGTPRTFSTTTTIGNATINVSLSPVLNENDRTL 617 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 L + DI+ + E +++ K++F+ +SHE+RTP+TAI GF++++ Sbjct: 618 GALLVLRDITR-EVEADRM-------------KNEFIGTMSHELRTPMTAIKGFTQLLAM 663 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 G L + + E+ N I + +++++ND+L+I+KIESG + L + + L EA+S I Sbjct: 664 GGLGQLNDTQR-EFVNTIYNNTERMINLINDVLEITKIESGSIELEWRSLHLAEALSGVI 722 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII----- 727 + +Q + ++++ + S +P I AD + QI ++L NA+ +TP+GG+I I Sbjct: 723 AELQSHISQRQHQLTISIPPGLPLIRADAMRLHQILYHVLLNAVKYTPAGGKITIAAREI 782 Query: 728 ----------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 S HT++ ++L + DTGVG+ +L + F + N ++ GTGLG Sbjct: 783 LNVDFPEPVRSILHTNHRYLLLSISDTGVGIRPEDLPRIFDRFFRAENPLKVEAGGTGLG 842 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 L + K +V G ++ ST +G+ I P+ Sbjct: 843 LSIVKPLVQLLGGHIWVESTVGQGSTFYIALPV 875 >gi|253996018|ref|YP_003048082.1| multi-sensor hybrid histidine kinase [Methylotenera mobilis JLW8] gi|253982697|gb|ACT47555.1| multi-sensor hybrid histidine kinase [Methylotenera mobilis JLW8] Length = 1230 Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 113/363 (31%), Positives = 182/363 (50%), Gaps = 29/363 (7%) Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-EQNTPSVMNHYLTEILSLD 520 S IA + +G+IL+ N+ L GY +E+++ ++F E++ S Y + SL Sbjct: 536 STSIAEFSVDGLILTANQNFLSLLGYTLEEVIGLHHSIFCSEEDAKSA--RYKNKWRSLR 593 Query: 521 LRQTL--EKITLGSTKEEKLLSL---------RIIIKKLPFSSCYSLTMHDISEWKQEKN 569 + + E + LG + E ++ I K + F M DI+E K+ +N Sbjct: 594 NGEFVHGEFLRLGKDRREVWINAFYSPVKDFDNKIDKVIMF-------MIDITERKKMEN 646 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 L AK IAE+ +S KS FLA +SHEIRTP+ AIIGF+E++ + P Y + Sbjct: 647 DLREAKNIAEQAASVKSTFLANMSHEIRTPMNAIIGFTELMLDTEM----KPDQQNYVST 702 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+ S +L ++ND+LD +K+E G + L F S++ V IS + L A +K + ++ Sbjct: 703 INNSAKSLLHLLNDILDSAKLEKGMLELEFFDFSMNTLVDSVISTLWLQARKKELDLQLE 762 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVG 747 + + ++Q+ +N++ NAI FT G + + N++VI V DTG+G Sbjct: 763 ICDEVSGYYYGPSHRIRQVLMNLVGNAIKFTDIGS--VKLKVYAQNQDVIHFDVVDTGIG 820 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + L+ +PF Q S R GTGLG ++K +V+A G S KG+ I Sbjct: 821 IAADRLDAIFEPFTQADASMSRRFGGTGLGTTISKQLVEAMGGTIKATSQLGKGSCFSIN 880 Query: 808 FPL 810 PL Sbjct: 881 LPL 883 Score = 38.1 bits (87), Expect = 6.5, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL----EQNTPSV 508 +L +IL DGI IN +G ILS N +LFG+ ++++ + + + N Sbjct: 274 RLSTILNTAIDGIITINTKGNILSFNTVAEQLFGWTADEVIGRNINILMPNPHHSNHDEY 333 Query: 509 MNHYL 513 +N+YL Sbjct: 334 LNNYL 338 >gi|149174179|ref|ZP_01852807.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] gi|148847159|gb|EDL61494.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] Length = 739 Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 84/231 (36%), Positives = 136/231 (58%), Gaps = 9/231 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHEIRTP+TAI+GF++++ N L IE I ++G +L ++ND+ Sbjct: 344 KSEFLANMSHEIRTPMTAILGFTDILIND----LNQTEEIEVVRTIHQNGEYLLGLINDI 399 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRS 703 LD+SKIE GK+++ + S E V++ ISL+Q+ A K I + +F +P ++ D Sbjct: 400 LDLSKIEDGKLDVEWLDCSPHEIVNDVISLLQVRAVAKGIPLEVNFEGPVPELIHTDPAR 459 Query: 704 VKQIALNILSNAIHFTPSGG-QIII---STTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759 ++QI +N++ NAI FT G Q++I S + +++ V DTG+G+ ++E P Sbjct: 460 LRQILINLIGNAIKFTEHGSVQLVIRLVSNQQSDQQKLHFDVFDTGIGIAAEQIENLFLP 519 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F Q +S + GTGLGL + K +V+ G + ST KG+ +I P+ Sbjct: 520 FTQADSSTTRQYGGTGLGLAICKRLVELLGGTIQVSSTVGKGSTFSVIIPV 570 >gi|83312715|ref|YP_422979.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82947556|dbj|BAE52420.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 870 Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 114/436 (26%), Positives = 208/436 (47%), Gaps = 38/436 (8%) Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 ++R +A + + H Q R + A+ I +P G D R+ E Sbjct: 450 AERMDLARNFQPHRFQRQRADGTALEVIG--------NPLPGGGFVATHTDI-TEARRAE 500 Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 + L +E + + I + G I N ++ GY +E++ P + Sbjct: 501 EALRTLSRAVEQSPVSVIITDPRGNIDYVNPKFMEVCGYTLEEV---------RGLNPRL 551 Query: 509 MNHYLTE-ILSLDLRQTLEKITLGSTKEEKLLSLR----IIIKKL---PFSSCYSLTMH- 559 + LT+ + DL +T IT G T E +L + R + ++ P S +H Sbjct: 552 LKSGLTQDAVYADLWRT---ITAGGTWEGELQNRRKNGELYWERASISPIRSPDGAILHY 608 Query: 560 -----DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 DI+ K ++ L A + AE + K+ FL+ +SHE+RTPLTA++G++E++++ Sbjct: 609 LAVKEDITARKAAEDALVAAMQAAEDANRAKTVFLSHMSHELRTPLTAVLGYTEMLESGM 668 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 GPL + ++ ++ I SG +L I++++LDIS+IE G + P L E + + Sbjct: 669 AGPLPS-QHADFVAAISDSGRHLLSIIDEVLDISRIELGSYRIATGPTDLRSIAQECVGM 727 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 ++ K I + +P ++ D R+V+Q+ +N+L NA+ +T +GG+I + T + Sbjct: 728 LRPQCVAKDIQLDLEEGGAMP-LVTDSRAVRQVLINLLGNAVKYTEAGGRISVGLTR-AG 785 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + + + V DTG G+ +L +PF ++ + G GLGL + + +V+ G I Sbjct: 786 QTLRVVVADTGCGIATDKLAHVFEPFQRVDPLRADPARGVGLGLAICRRIVELLHGDIAI 845 Query: 795 FSTPAKGTLIEIIFPL 810 S P +GT + + PL Sbjct: 846 QSEPGRGTAVTLTLPL 861 >gi|288959269|ref|YP_003449610.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288911577|dbj|BAI73066.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1300 Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 117/401 (29%), Positives = 188/401 (46%), Gaps = 52/401 (12%) Query: 437 DVDTRINKRKMEIEVM---------QLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 D + ++ +K E+E +L IL + SD I ++R G++ N A S L GY Sbjct: 329 DTNAELDAKKRELESANEAFASANRRLNLILRSASDSICGVDRNGLVTFANPATSALTGY 388 Query: 488 PVEDILRKPFTVFLEQNT------PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 E++L + P++ +LS + R+ LE TK K Sbjct: 389 ANEELLGGNLHELIHARRADGGHFPALECPVTEVLLSGESRRGLEDTYW--TKGGK---- 442 Query: 542 RIIIKKLPFSSCYS--------------LTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 PF Y+ L H+I+E K+ + + A+ AE S KS+ Sbjct: 443 -------PFLVEYTASPMLADGKVEGAVLVFHEIAERKRAEAAMQRARLAAEAASRAKSE 495 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHEIRTP+ AI+G +++ R +Y + S +L I+ND+LD Sbjct: 496 FLANMSHEIRTPMNAILGLIHLLQQTEL----TGRQADYVQKVRVSAQSLLGILNDILDF 551 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQ 706 SK+E+GK+ L LD+ + +V A EK I + S A ++P ++ D ++Q Sbjct: 552 SKVEAGKLELERADFRLDDLLQTLAVIVGSAAQEKDIDVLFSVAPDVPLELVGDPLRLQQ 611 Query: 707 IALNILSNAIHFTPSGGQIIIST---THTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQ 762 I +N+ NAI FT + G++++S T + V+ VRDTG+G+ + E+ + F Q Sbjct: 612 ILINLAGNAIKFTET-GEVVVSVRLRTLADDGAVLDFSVRDTGIGIAPEQRERLFEAFSQ 670 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +S R GTGLGL + +V G + S P KG++ Sbjct: 671 GDSSTTRRFGGTGLGLAICARLVRLMNGAMDVESEPGKGSV 711 >gi|87119494|ref|ZP_01075391.1| two-component system sensory histidine kinase [Marinomonas sp. MED121] gi|86164970|gb|EAQ66238.1| two-component system sensory histidine kinase [Marinomonas sp. MED121] Length = 910 Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 83/254 (32%), Positives = 143/254 (56%), Gaps = 4/254 (1%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 E+ + +A+ A K + KS+FLA++SHE+RTPL AIIG +E++ + Y+E Sbjct: 401 ERKEAENARAEAVKANEVKSEFLAKMSHELRTPLNAIIGLTEMMHEDAI-EFDDEDYVEP 459 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + + R+G +L+++ND+LDISKIE+GKM LH E +L A+ + I+ ++ +++K I + Sbjct: 460 LDRVLRAGKHLLNLINDILDISKIEAGKMELHRENFNLIMALEDVIASIKPLSDKKSIKL 519 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 F + D +KQI LN++SNA+ FT G ++ + T N+ + + V D+G+ Sbjct: 520 EGDF-EVLGDHFNDQTRLKQILLNLMSNAVKFTDEG--VVTLSARTENDRLNIAVTDSGI 576 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 GM + + F Q+ +S + +GTGLGL +++ G ++ S KG+ + Sbjct: 577 GMNEEQCAGLFQDFVQVDSSSVRKHQGTGLGLAISRKFSRMMGGDIFVTSEVGKGSTFTL 636 Query: 807 IFPLYDTSHPHDCI 820 PL P D + Sbjct: 637 SIPLNQEDVPADLV 650 >gi|156743538|ref|YP_001433667.1| histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156234866|gb|ABU59649.1| histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 548 Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 130/226 (57%), Gaps = 2/226 (0%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +FLA +SHE+RTPL+AI+G +E+++ + GPL N +E + I+ SG +L ++NDL Sbjct: 166 KDEFLAGISHEVRTPLSAILGLAELLRAKIVGPL-NDEQVEMLSRIEASGRHLLAVINDL 224 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD++KIE+G+ L V+ + ++ +V+ A K + + + + AD R + Sbjct: 225 LDLAKIEAGRFELEPRLVAAHQVCRSSLLMVKELALRKHQRVHINLDPKVEVLHADERRL 284 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQI 763 +Q +N+LSNA+ FTP GG + + +E++ + V DTG+G+ ++ + +PF QI Sbjct: 285 RQALINLLSNAVKFTPPGGDVGLDLEGDPEQEIVRITVWDTGIGIAAEDIPRLFQPFSQI 344 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 N Q G+GLGL + + + + G + S P KG+ + P Sbjct: 345 QNKYQHDQAGSGLGLVMVARLAELHGGGVSLVSEPGKGSRFTMTLP 390 >gi|296533733|ref|ZP_06896283.1| possible sensor histidine kinase [Roseomonas cervicalis ATCC 49957] gi|296265955|gb|EFH12030.1| possible sensor histidine kinase [Roseomonas cervicalis ATCC 49957] Length = 726 Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 82/248 (33%), Positives = 143/248 (57%), Gaps = 5/248 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E ++ + +L A+ +AE+ ++ K+ FLA +SHE+RTPL A+IGFSE + GP Sbjct: 465 DVTEERRARAELERARAVAEEANAAKNRFLATMSHELRTPLNAVIGFSEALAADPSGP-- 522 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 E+A I +G +L +++++L+++K +G + + + L + A L++ A Sbjct: 523 --DTAEFATAIHDAGRHLLALIDEILEVAKAGAGTVRVETRALYLPSVLEGAARLMRQSA 580 Query: 680 NEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 I L ++PR A+ R ++Q+ LN+LSNA+ FTP+GG++ + V Sbjct: 581 EAAGITLTLAPPPADLPRARAEERRLRQVLLNLLSNAVKFTPAGGEVALEAEALPGGAVE 640 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRD+G+G+ +LE+A +PF Q+ S R G+GLGL LA+A+ + + S Sbjct: 641 IRVRDSGIGIEPGQLERAFEPFVQLETSHARRYGGSGLGLYLARALAQSMGATLALESRR 700 Query: 799 AKGTLIEI 806 +GTL + Sbjct: 701 GEGTLARL 708 >gi|148263614|ref|YP_001230320.1| multi-sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146397114|gb|ABQ25747.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 832 Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 116/424 (27%), Positives = 200/424 (47%), Gaps = 58/424 (13%) Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 + ++++E + L +I+E + D I I+ EG I+S NR +L+GYP E++ P ++ + Sbjct: 409 VERKRIEEALSLLAAIVEFSDDAIIGISPEGTIVSWNRGAERLYGYPAEEVKVCPVSILI 468 Query: 502 EQNTPSVMNHYLTEIL---------SLDLRQ----------------TLEKITLGSTKEE 536 + P M + L + ++ LR+ + KI ST Sbjct: 469 PDDHPEEMAYILDHVRQGKPIERHETVRLRKDGSRVEVSVTISPICNSGGKIIGASTIAR 528 Query: 537 KLLSLR---IIIKKL--------------------PFSSCYSLTMHDISEWKQEKNKLSH 573 + L+ I ++KL S M+ + + ++ ++L Sbjct: 529 DITELKKAEIELRKLNEELEQRVIERTADLNRRSTELSESQQALMNIVEDLNEKTDELEG 588 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A ++ KS F+A +SHE+RTPL +IIGFS VI N+ GP+ N E I R Sbjct: 589 ANTKLKEFDRLKSMFIASMSHELRTPLNSIIGFSSVILNEWIGPV-NAEQKENLAIILRC 647 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +L+++ND++D+SKIE+GK+ E + +SEA+ LV+ EK + ++ + + Sbjct: 648 GKHLLNLINDVIDVSKIEAGKIESVAEEFDFYDLISEAVGLVRKDMEEKGLDLQVAATHQ 707 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI------LRVRDTGVG 747 ++ D R + Q LN+LSNA+ FT GG + + E + V DTG+G Sbjct: 708 --QMHMDRRRLLQCVLNLLSNALKFTEHGGLTVETRIMPCPGEAPEAGVAEISVTDTGIG 765 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM-GKFYIFSTPAKGTLIEI 806 + +L K +PF ++ + Q GTGLGL L + + + G + S KG+ + Sbjct: 766 IREEDLPKMFQPFVRLASPLQATVPGTGLGLYLTRKLAAEVLKGDILLTSEYGKGSRFTL 825 Query: 807 IFPL 810 P+ Sbjct: 826 RIPV 829 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 36/58 (62%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 +++ E E++QL +I+E + D I +GII S N+ +++GY ++I+ KP + + Sbjct: 125 RKRAEREIVQLAAIVEFSDDAIIGKTPDGIITSWNKGAERIYGYTADEIVGKPISTLV 182 >gi|307298320|ref|ZP_07578124.1| Hpt sensor hybrid histidine kinase [Thermotogales bacterium mesG1.Ag.4.2] gi|306916406|gb|EFN46789.1| Hpt sensor hybrid histidine kinase [Thermotogales bacterium mesG1.Ag.4.2] Length = 776 Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 87/237 (36%), Positives = 133/237 (56%), Gaps = 10/237 (4%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK+ AE + KS F+AR+SHEIRTPL AI G + ++K + Y + I Sbjct: 126 LERAKREAEDANEFKSSFMARMSHEIRTPLNAITGMAYLLKKTEISLTQSM----YVDRI 181 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 ++ N +L I+ND+LD SKIE+GK+ L S+D+ + + +++V E+ I R S Sbjct: 182 TQASNNMLSIINDILDFSKIEAGKVELEITSFSMDQIIQDVVNIVSYKIEEQGIGFRLSK 241 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTG 745 IP D + ++QI LNIL+NA FT S G++ + + E + VRDTG Sbjct: 242 DPLIPNWFFGDQKRIEQILLNILNNAAKFT-SAGEVSLDVRLVAKENEKYHLSFSVRDTG 300 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +GMT +++ PF Q ++ R G+GLGL + K +V+ GK +FSTP +G+ Sbjct: 301 IGMTEEQIKNLFMPFIQGDSTINRRFGGSGLGLSIVKNLVEMMGGKIEVFSTPGEGS 357 >gi|158425532|ref|YP_001526824.1| periplasmic sensor signal transduction histidine kinase [Azorhizobium caulinodans ORS 571] gi|158332421|dbj|BAF89906.1| periplasmic sensor signal transduction histidine kinase [Azorhizobium caulinodans ORS 571] Length = 352 Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 125/229 (54%), Gaps = 1/229 (0%) Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 E+ KS FLA +SHE+RTPL A+IGFSEV+ + GP N Y +YA I SG +L + Sbjct: 105 ENQAKSRFLAEMSHELRTPLNAVIGFSEVMAQEVLGPHANAAYRDYAQDIHASGRHLLAL 164 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700 +D+LD+++IE+G + V+L + +++L A E+ I + + N PR+ AD Sbjct: 165 ADDILDLARIETGHRQVLETAVNLGALAQDCAHMMRLGAAERDITLIVTL-NARPRLWAD 223 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 R+V+Q+ LN+++NA+ FTP+GG + + + V D G G+ + EL A+ Sbjct: 224 ERAVRQMVLNLMANAVKFTPAGGTVELFVDSDAEGAPFCAVEDNGPGLADAELPLALSAH 283 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + G+G GLGL + +A+ + + + GT + FP Sbjct: 284 HRESRLDPASGQGAGLGLAIVRALAQMHEARLDLTERATGGTRATLSFP 332 >gi|82703807|ref|YP_413373.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] gi|82411872|gb|ABB75981.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] Length = 1118 Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 106/348 (30%), Positives = 171/348 (49%), Gaps = 30/348 (8%) Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS--TK 534 N A +K+FGY E++L KPF + + + D L+K+ +GS + Sbjct: 317 VNTAWTKVFGYSEEELLSKPFMDLVFSGSRA------------DTAAELDKLVMGSNVSF 364 Query: 535 EEKLL----SLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 E ++ S R ++ + + + + DI+ K + +L +A+K AE + KS+ Sbjct: 365 ESQMRCKDGSFRWVLWNIAAAQDVREFYFSGQDITARKNIERELQNARKAAEAANRAKSE 424 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHEIRTP+ ++G ++ N P E A SG +L I+ND+LD Sbjct: 425 FLANMSHEIRTPMNGVLGAVGLLLNTTL----TPSQRELAGLARASGETLLCIINDILDF 480 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLY-ANEKRILIRTSFANNIPR-ILADLRSVK 705 SKIE+GK+ + P L +AV E +V + A + + + + N+PR + DL ++ Sbjct: 481 SKIEAGKLVISPVPFDLLQAVEEVAGMVAMQPARKANVNVIVRYLPNVPRYVFGDLGRIR 540 Query: 706 QIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQ 762 Q+ +N+ +NAI FT G +I + S +EV LR V D+G+G+ +L+ F Q Sbjct: 541 QVLINLTNNAIKFTDKGHVLIDVEAEALSEDEVSLRISVEDSGLGIAPDKLQSIFDKFTQ 600 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 S R GTGLGL ++K +V G S G+ PL Sbjct: 601 ADASTTRRYGGTGLGLAISKQLVQLMGGTIAAKSRVGAGSTFWFTLPL 648 >gi|260426521|ref|ZP_05780500.1| sensory box histidine kinase/response regulator [Citreicella sp. SE45] gi|260421013|gb|EEX14264.1| sensory box histidine kinase/response regulator [Citreicella sp. SE45] Length = 858 Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 102/386 (26%), Positives = 185/386 (47%), Gaps = 16/386 (4%) Query: 441 RINKRK---MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 R+ +R+ +EI +L +I+E + D I + + +G++ N A ++ GY +D+ KP Sbjct: 210 RVARRRADAIEIAGARLRTIVETSPDAIVVTDEDGLVRGFNTAAERMLGYGRDDVFGKPA 269 Query: 498 -TVFLEQNTP----SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 +F P + + + E + +I+L ++ +L I + Sbjct: 270 RQLFAPTELPDERTATLFAFADERRRPTPEERRFEISL-RDRDGRLFPAEFSIDRAGTDD 328 Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 Y + DIS WK+ + +L+ A+ A KS+FLA +SHE+RTPL ++G ++++ Sbjct: 329 PLYVAYIRDISRWKEVEEQLTEARDRALAGERSKSEFLAVMSHEMRTPLNGLLGTLQLLR 388 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 ++ R + + SG L+L++VND+LD++K E+GKM P SL V Sbjct: 389 DEEL----TERQCAMIDRTEASGRLLLELVNDVLDLTKFEAGKMTAEHAPFSLTALVGGV 444 Query: 672 ISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIIST 729 + V+ A+ R + + + D R ++Q+ LN++ NA+ FT G +I Sbjct: 445 VETVRPIADRYRNALSWRWVGPEGDWVDGDARRLRQVLLNLVGNALKFTRDGTVEIEAEY 504 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + LRV D+G+G+ +L + + F + +S GTGLGL +A+ Sbjct: 505 LDDVGNALELRVIDSGIGIREEDLARIFRDFETLDSSYAREAGGTGLGLGIAQRFARLMG 564 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSH 815 G S P +G+L + P+ T+ Sbjct: 565 GSIGAESEPGEGSLFWVRLPMPQTAR 590 >gi|254428255|ref|ZP_05041962.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] gi|196194424|gb|EDX89383.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] Length = 699 Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 82/244 (33%), Positives = 135/244 (55%), Gaps = 4/244 (1%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + +L+ A+ AE S KS FLA +SHEIRTP+TAI+G++E++++ RY+ Sbjct: 302 QTQLAQARMQAEDASQTKSQFLANISHEIRTPMTAILGYTELLRDGSLNATDKRRYL--- 358 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I +G+ +L ++ND+LD+S+IE+G+++ S + E I +QL A EK I +R Sbjct: 359 TIIQHNGDALLALINDVLDLSRIEAGQLHPEQRLFSARVLLDEVIDSLQLRATEKDIDLR 418 Query: 688 TSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 + ++ P + D ++QI +N++ NA+ FT G + + + V DTG+ Sbjct: 419 IHYLTDLPPTVSGDAFRLRQILVNLIGNAVKFTERGRVHVGVNWDEEASRLNVSVEDTGI 478 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G++ EL + PF Q S R GTGLGL +A+ + A G +FST +G+ + Sbjct: 479 GISEGELSRIFLPFSQADASHTRRYTGTGLGLSIARQLARAQDGDIQVFSTLNQGSCFVL 538 Query: 807 IFPL 810 PL Sbjct: 539 DIPL 542 >gi|189424785|ref|YP_001951962.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189421044|gb|ACD95442.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 881 Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 114/375 (30%), Positives = 190/375 (50%), Gaps = 25/375 (6%) Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 ++L SI ++ D I +++ +G I N A + GY E+ L K + L P Sbjct: 369 VRLRSITDSAQDAILMMDDQGAITFWNPAAETILGYKAEEALGKDLHLLL---APLRYQQ 425 Query: 512 YLTEILSLDLRQTLEKITLGSTKE--EKLLSLRIIIKKLPFSSC------YSLTM-HDIS 562 + S+ + QT +G T E K + I+ L S+ Y++ + DI+ Sbjct: 426 AFQKAFSVFV-QTGRGHAVGKTVELAAKRKDGQEIVVSLSLSAVFLNGRWYAVGLLRDIT 484 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E K + +L A+ AE + KS+FLA +SHEIRTP+ ++G +++++ + P Sbjct: 485 ESKHYQEELLEARHSAEAANRAKSEFLANMSHEIRTPMNGVVGMAQLLRYTQ--PTREQE 542 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 EY + ++ S +L+++ND+LD+S+IESGK+ L SL + E +S +K Sbjct: 543 --EYLDNLELSCKNLLELINDILDLSRIESGKLELEAAVFSLRSCIQEVVSNQASRIEQK 600 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV---- 737 + + TS +P +++ D KQI LN+L NAI FT + G I +S +S +E Sbjct: 601 GLQLLTSLDEQVPEQVVGDSLRFKQILLNLLGNAIKFTEA-GSITVSGQISSRQETGCTF 659 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 L V DTG+GMT L++ F Q +S G+GLGL + + + + G+ + ST Sbjct: 660 RLMVSDTGIGMTEETLQRIFNSFEQADSSTTRVYGGSGLGLAICRRLTELMGGRIWAEST 719 Query: 798 PAKGT--LIEIIFPL 810 KG+ +E+ F L Sbjct: 720 FGKGSAFFVELPFAL 734 >gi|307943987|ref|ZP_07659329.1| multi-sensor hybrid histidine kinase [Roseibium sp. TrichSKD4] gi|307772828|gb|EFO32047.1| multi-sensor hybrid histidine kinase [Roseibium sp. TrichSKD4] Length = 1168 Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 108/387 (27%), Positives = 195/387 (50%), Gaps = 25/387 (6%) Query: 440 TRINKRKMEIEVMQ--LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 T + R+ E+ Q L +++ A+ DG+ ++N EG++L N A +FG+ ++I+ + Sbjct: 514 TELKHREQELLRSQGLLQNVVSASFDGVIVMNAEGVVLDFNPAAEDVFGWTSDEIVGERL 573 Query: 498 TVF-----LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL---- 548 + F L + + ++HYL + + +E G K+ +L + + I++ Sbjct: 574 SDFIIPEHLREAHEAGLSHYLATGEGPVIGKRIE--IQGLHKQGHILEVELAIRQTTSDT 631 Query: 549 -PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 P Y + DI+E K L AK+ AE + K+ FLA +SHEIRTP+ ++G Sbjct: 632 GPLFLGY---VRDITERKAADEALRDAKERAEAANEAKAKFLAMMSHEIRTPMNGVLGIL 688 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 ++++ NP Y SG +L+++ND+LD SK+E+ ++ L P +L A Sbjct: 689 SLLRDTNL----NPAQEIYVKTARESGRSLLELINDILDFSKLEASRVELDQAPFNLRTA 744 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QI 725 V + L A EK + + F +++PR ++ D ++Q+ LN +SNAI FT G ++ Sbjct: 745 VKSVVDLFTPIAQEKALELNWRFPSDLPRNVVGDAGRLRQVLLNFVSNAIKFTELGSVEV 804 Query: 726 IISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + + ++ + R V+DTG+G+ + + F + + R GTGLGL ++K Sbjct: 805 NVGLEKSDPQKPVFRFSVKDTGIGIPAEKHDALFGDFVTVDGASTKRYGGTGLGLAISKQ 864 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL 810 + D G+ + S P G+ PL Sbjct: 865 IADLMEGEITLESLPGAGSTFHFFVPL 891 >gi|206889312|ref|YP_002248455.1| two-component hybrid sensor and regulator [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741250|gb|ACI20307.1| two-component hybrid sensor and regulator [Thermodesulfovibrio yellowstonii DSM 11347] Length = 620 Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 105/378 (27%), Positives = 197/378 (52%), Gaps = 45/378 (11%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L +I++ +DG+ +++++G+I N A S++FG +++ K + Sbjct: 255 LTTIIDNMADGLIVVDKDGVINHINPAASEMFGKAEFEMIGKNVKI-------------- 300 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 L + L+K+ S E+++S + ++ +++ + S+ SE + K L Sbjct: 301 -------LGKELDKLVKKSLNTEEIVSNEINLVNERVGKAVAKSIKKEYFSEESEAKGIL 353 Query: 572 SHAKKI----AEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP-------LG 619 I EKE K++F+ VSHE+RTPLT+I+GF E+I N++F + Sbjct: 354 GSVILIRDITQEKEVDRLKTEFITVVSHELRTPLTSILGFIEII-NKKFTENILPHLDMN 412 Query: 620 NPRYIEYANYIDRSGNLVLD-------IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 N R + N I+++ ++L ++ND+LDISK+ESGK +F+ +S+ +++A Sbjct: 413 NFRLSKAVNKINKNFKIILSEGERITSLINDVLDISKLESGKAIWNFKEISIQGVITDAY 472 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + +K I ++P I AD + Q+ +N+LSNA+ FT G + T Sbjct: 473 KALSSLFEQKGIPCYIEIQPSLPFINADRERLIQVVINLLSNALKFTEKG--YVKCKTAL 530 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + +E+++ V D+G+G+ E E+ + F Q+ + + + +GTGLGL ++K +V+A+ GK Sbjct: 531 NADEIVVSVEDSGIGIPEEEKERIFEKFKQVGDLIRGKPKGTGLGLAISKQIVEAHGGKI 590 Query: 793 YIFSTPAKGTLIEIIFPL 810 ++ S KG+ PL Sbjct: 591 WVESELGKGSTFYFTIPL 608 >gi|153873278|ref|ZP_02001912.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152070256|gb|EDN68088.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 617 Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 95/300 (31%), Positives = 161/300 (53%), Gaps = 11/300 (3%) Query: 522 RQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYSLTMHDISEWKQ-----EKNKLSHAK 575 +Q LE+ T E LL R I+ +++ + LT +++E Q ++ K ++ Sbjct: 52 KQDLEQKVKERTAE--LLEARNILEQRVEERTAELLTAKNLAEQAQKMADADRVKAEQSQ 109 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 KIAE+ + KS FLA +SHE+RTPL AIIG+SE+++ + L + I +G Sbjct: 110 KIAEEANYAKSHFLANMSHELRTPLNAIIGYSEMLQ-EDAEDLNQESCVLDLKKIQGAGK 168 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L ++N +LD+SKIE+G+M L+ E L+ ++E +S +Q +K +++T F +N+ Sbjct: 169 HLLGLINTVLDLSKIEAGRMELYIETFELNPVLNEIVSTIQPLVEKKANVLKTVFDDNLG 228 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 ++ DL ++Q+ LN+LSN FT G I E + + D G+GMT + +K Sbjct: 229 QMHTDLTKLRQMLLNLLSNTAKFTEQGQ--IRMEVRRDGEWINFCIADNGIGMTEEQQKK 286 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 +PF Q S R GTGLGL + K + G ++ S +G++ + P+ +H Sbjct: 287 IFQPFTQADASTTRRYGGTGLGLAITKQFSEMMGGVIWVESEFGQGSIFMMSLPIQAKTH 346 >gi|170751052|ref|YP_001757312.1| multi-sensor signal transduction histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170657574|gb|ACB26629.1| multi-sensor signal transduction histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 630 Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 130/228 (57%), Gaps = 3/228 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K FLA V+HE+RTPL AIIGFSEV+ + LG + EYA I SG+ +L +VN L Sbjct: 352 KGRFLANVTHELRTPLNAIIGFSEVLAGEGAVSLGPVQAREYAGIIGASGHHLLGVVNTL 411 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+S+I+SG + E + + + L++L A+ + + + + + I AD + Sbjct: 412 LDMSRIQSGNFDCAPETFDVADLLRGCCDLMRLKADAAGVALTAAPSGPV-EITADPAAC 470 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +Q+ +N++SNA+ FTPSGG+I +S + I+ V DTGVG+ +L K PF Q Sbjct: 471 RQVLINLISNAVKFTPSGGRIDLSLRRGAGSLDIV-VADTGVGIGADDLPKLGTPFFQAG 529 Query: 765 NSQQIRG-EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + R EGTGLGL + + +V + G I S P GT++ + PL Sbjct: 530 SGGYKRQHEGTGLGLSVVQGLVGLHGGSLLIESAPQAGTVVTVTLPLV 577 >gi|163847652|ref|YP_001635696.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222525511|ref|YP_002569982.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163668941|gb|ABY35307.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222449390|gb|ACM53656.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 876 Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 93/277 (33%), Positives = 143/277 (51%), Gaps = 16/277 (5%) Query: 548 LPFSSCYSLTMHDIS-------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 L F+S LT+ ++ + + +L A + A+ KSDFLA +SHE+RTPL Sbjct: 585 LTFASMVGLTIENVQLYNDLEQQVARRTEELRVALERAQLADRRKSDFLASISHELRTPL 644 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 AIIGFS V+ + PL P E I+R+G +L ++N+LLD+++IE+G +NL Sbjct: 645 NAIIGFSTVLLDDTDQPL-TPTQREDIQSINRNGRFLLHLINELLDLARIEAGHLNLEIS 703 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 V+L SE VQ + + +R + +P I AD ++QI N+LSNAI FT Sbjct: 704 NVNLYNITSEVCDTVQTLLRNRPVTLRNAVPVTLPDIAADGDRLRQILFNLLSNAIKFTE 763 Query: 721 SGGQIIISTTHTSNEE-------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 G + + H E V + V DTG+G+ + F QI + ++ R G Sbjct: 764 RGTITVSARVHDEVNEDGKVGRYVAVSVSDTGIGIPLERQHEIFNEFVQI-HGRRSRLSG 822 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 TGLGL + + +V A G+ ++ STP G+ P+ Sbjct: 823 TGLGLAITRKLVLAQGGRIWVDSTPGIGSTFTFTIPV 859 >gi|254411326|ref|ZP_05025103.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196181827|gb|EDX76814.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1210 Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 115/399 (28%), Positives = 197/399 (49%), Gaps = 58/399 (14%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 + K++ +L +I+ AT DGI I++R+G + N A ++LF + +L + + L + Sbjct: 598 EEKLQQSETRLKTIITATCDGIMIVDRQGQVCFANPAAAQLFDMTPDALLNYQWGMPLGE 657 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 T EI + ++ +G T E K ++ K S Y + + DI++ Sbjct: 658 TT---------EI------ELMQSSGIGRTAEMKATPIQWFSK-----SAYVIALRDITK 697 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 KQ L AK AE + KS FLA +SHE+RTPL I+GF++V+ P P Sbjct: 698 RKQADLSLQQAKADAEAANQAKSMFLANMSHELRTPLNIILGFTQVMSRD---PAITPEE 754 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQLYAN 680 E + I++SGN +L ++ND+LD+SKIE+G +++ F+ ++L ++ E + Q A Sbjct: 755 QENLDIINKSGNHLLSLINDVLDLSKIEAGCISVEESRFDLIALMRSLQE---MFQHKAR 811 Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIII----STTHT 732 K + + + A ++P I AD ++Q+ +N+LSNAI FT +G ++ + H Sbjct: 812 AKGLQLHLNIAADVPHYIQADSNKLRQVLINLLSNAIKFTQNGSINLRVALLKAEGNDHG 871 Query: 733 SNEEVIL--------------------RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 S+ E ++ V DTGVG+ EL F Q ++ ++ E Sbjct: 872 SDAEDMITPPSSQTRHGTSLQASHLHFEVSDTGVGIAPTELGSIFDAFIQT-HAGKVANE 930 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 GTGLGL +++ V G + S +G+ P++ Sbjct: 931 GTGLGLAISRKFVQLMGGDIQVSSQLNQGSTFSFEIPVH 969 Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 7/129 (5%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 + ILE SDGI ++ I+ N+ K+FGY V ++L +P + L N ++ +H Sbjct: 478 RFAGILEIASDGIISVDANQRIILFNQGAEKMFGYRVSEVLGQPLDLLLP-NRYTIAHHQ 536 Query: 513 LTEILSLD----LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQ 566 + S R + G K+ I KL ++ + DI+E KQ Sbjct: 537 HIKTFSHSQGKARRMGERQAIFGRRKDGTEFPAEASISKLTLGDQVVFTAFVQDITERKQ 596 Query: 567 EKNKLSHAK 575 + KL ++ Sbjct: 597 FEEKLQQSE 605 >gi|330507467|ref|YP_004383895.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6] gi|328928275|gb|AEB68077.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6] Length = 1090 Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 104/378 (27%), Positives = 184/378 (48%), Gaps = 32/378 (8%) Query: 442 INKRKM-EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 I +RKM E V S+L+ + + + +G I+ NR L+ + E++L Sbjct: 568 ITERKMAEERVAFQASLLDQVRNAVIATDFDGRIIYWNRFAESLYQWKAEEVL------- 620 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH- 559 S+ + L + ++ ++I E + L R + P S +S Sbjct: 621 ----GASIKDTILPPEMKYNVEMVTKEILAKGYLECEYLVKRKDGSRFPASYIFSTICDN 676 Query: 560 ------------DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 D++E K+ + L AK+ AE + KS+FLA +SHEIRTP+ A+IGF+ Sbjct: 677 RQRRIGIISVSTDLTERKKVEQDLRDAKERAESATKAKSEFLANMSHEIRTPMNAVIGFT 736 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 ++ N + +Y I SG+ +L +++D+LD SKIE G M L E + L E Sbjct: 737 SLLLNTNIDSVQR----DYIETIHSSGDSLLKVISDILDFSKIEGGMMELEKERIDLIEC 792 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-GQI 725 + +++LV A+ K + + +PR ++ D+ ++QI +N+L NA+ FT G ++ Sbjct: 793 LETSLNLVAEDASRKGLSVSYEVEPQVPRYLMGDMTRLRQILVNLLGNAVKFTDKGFVRL 852 Query: 726 IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 +S + E+ RV D+G+G++ + + + F Q+ S + GTGLGL + K + Sbjct: 853 DVSALPVEDGHEIQFRVTDSGIGISQDRMSRLFQSFSQVDASTTRKYGGTGLGLAICKHL 912 Query: 785 VDANMGKFYIFSTPAKGT 802 + G + S P +G+ Sbjct: 913 AELMGGGIWAESVPGEGS 930 >gi|160876397|ref|YP_001555713.1| hybrid sensory histidine kinase BarA [Shewanella baltica OS195] gi|160861919|gb|ABX50453.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195] gi|315268587|gb|ADT95440.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678] Length = 933 Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 94/246 (38%), Positives = 140/246 (56%), Gaps = 10/246 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A + S KS+FLA +SHE+RTPL +IGF+ +++K PL + + ++Y Sbjct: 284 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKT----PLHSSQ-VDYIK 338 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS +L I+ND+LD SK+E+GKM L P L E + + I+L+ A K + + Sbjct: 339 TIERSATNLLGIINDILDFSKLEAGKMVLENMPFGLRETIGDTITLISGSAQAKGLELVV 398 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDT 744 A N+P + D V QI N++ NAI FT SG ++ I S E+V+LR V DT Sbjct: 399 DIAPNVPDNVNGDAMRVCQIINNLVGNAIKFTDSGSVMVKIELQSQSEEQVVLRCDVVDT 458 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + + FGQ +S R GTGLGL + K +V+ G+ S+P KG+ Sbjct: 459 GIGIDESQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSPEKGSNF 518 Query: 805 EIIFPL 810 PL Sbjct: 519 WFSLPL 524 >gi|32475597|ref|NP_868591.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32446139|emb|CAD75968.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 801 Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 155/263 (58%), Gaps = 7/263 (2%) Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + + T+ D++E K+++ +L +++IA + KS+FLA +SHEIRTP+ AI+G+++V+ Sbjct: 361 TSFDGTVADVTERKRQEERLQRSEQIALAANQSKSEFLANMSHEIRTPMAAILGYADVL- 419 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 G L +P I R+G +L ++ND+LD+S+IE+GK+++ E V L V + Sbjct: 420 ---LGHLEDPDNRNCVMIIKRNGEHLLSLINDILDLSRIEAGKLSVDAESVPLPRLVGDI 476 Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIIST 729 SL+Q+ A+EK + + F +P+ I D ++Q+ +N++ NAI FT G ++ + Sbjct: 477 QSLMQVRADEKNVDFQVEFEGRVPQSIETDPTRLRQVLINLIGNAIKFTDEGSVRLKVRF 536 Query: 730 THTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 ++ V+ + DTG+G++ + ++ KPF Q S + G+GLGL +++ +++ Sbjct: 537 MKGADPPVVEFSIVDTGIGISKEQQDRLFKPFSQGDASVTRKYGGSGLGLAISQRLIEMM 596 Query: 789 MGKFYIFSTPAKGTLIEIIFPLY 811 G+ + S +G+ + P++ Sbjct: 597 DGEMSLESELGEGSTFFVRLPVH 619 >gi|16331636|ref|NP_442364.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803] gi|1001697|dbj|BAA10434.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803] Length = 417 Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 124/222 (55%), Gaps = 3/222 (1%) Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 L+ + HE RTPLTAIIGF+ +++++ +G L NP+ +Y S +L +VND LD+S Sbjct: 190 LSHIHHEFRTPLTAIIGFARMLRDELYGKL-NPKQHQYVQGTLNSAEHLLSLVNDFLDLS 248 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708 KI++ L +E V++++ IS+VQ A EK++ + + + + D R KQI Sbjct: 249 KIDARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDGVDFCYVDQRRWKQIL 308 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 +N+LSN + FTP G + +++ +I V DTG+G+ + +PF QI + Sbjct: 309 INLLSNGVKFTPKGS--VTLAVKATDKALIFSVIDTGIGIDPEDQRDLFQPFKQISHPPS 366 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +GTGLGL L++ + + G + STP G+ I PL Sbjct: 367 FAEKGTGLGLALSRRLAQLHGGDIQLTSTPGVGSCFSAILPL 408 >gi|323493472|ref|ZP_08098594.1| CheY-like receiver protein [Vibrio brasiliensis LMG 20546] gi|323312295|gb|EGA65437.1| CheY-like receiver protein [Vibrio brasiliensis LMG 20546] Length = 1052 Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 121/390 (31%), Positives = 196/390 (50%), Gaps = 32/390 (8%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAII-NREGIILSTNRAVSKLFG 486 Q G+E E I R +++ + S I+E +AII N++ IIL N A + +G Sbjct: 146 QEGLEQE-----IELRTRDLQASEALSRTIIEGAPSSVAIIDNKQRIILWNNTA-EQTYG 199 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLG--------STKEEK 537 Y EDI L P L +ILS +LR + K++ G ST Sbjct: 200 YRFEDIEGSNLCELLRIELP----EELKDILSGELRFEDQSKVSGGFFEVETYTSTGRMI 255 Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + L I I ++ + D++ K +++L+ A+ AE+ KS FLA +SHEIR Sbjct: 256 PIDLGITIFLFDDQCRAAMFLRDVTSRKAVEDELNQARSKAEEAVEVKSMFLANMSHEIR 315 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ AIIG S + P+ +Y + I S +L+L I+ND+LD SKIE+GK+++ Sbjct: 316 TPMNAIIGMSHLALKTEL----TPKQHDYISKIHNSASLLLGIINDILDFSKIEAGKLSI 371 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAI 716 LD+ + + A EK + + ++P++L D + QI +N+++NA+ Sbjct: 372 ETIEFHLDDVLHNVSMVTGQKAFEKGLELIFQIDRDVPKVLYGDPLRLGQIIINLVNNAV 431 Query: 717 HFTPSGGQIIISTTHT--SNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 FT G+I + T T S+++V L+ V+DTG+GM+ + +K F Q S R Sbjct: 432 KFTEQ-GEITVHVTRTPHSDQKVELKFSVQDTGIGMSPEQSDKLFSAFTQADGSTTRRYG 490 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GTGLGL + + +V+ G + S +G+ Sbjct: 491 GTGLGLSICRRLVELMGGSIQVESILGQGS 520 >gi|229590396|ref|YP_002872515.1| putative aerobic respiration sensor-response protein; histidine protein kinase/phosphatase, sensor for arcA [Pseudomonas fluorescens SBW25] gi|229362262|emb|CAY49164.1| putative aerobic respiration sensor-response protein; histidine protein kinase/phosphatase, sensor for arcA [Pseudomonas fluorescens SBW25] Length = 771 Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 110/373 (29%), Positives = 193/373 (51%), Gaps = 44/373 (11%) Query: 457 ILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTP-------- 506 I++ D GI ++ G + S N ++ GY ++I+ + F+VF L Q P Sbjct: 270 IIDGVKDYGIFALDTAGHVTSWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPAMALD 329 Query: 507 --SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDI 561 + HY+ E LRQ + + +I + + +S DI Sbjct: 330 EATRHGHYMEE--GWRLRQ----------DGTRFWASVVITAQFDATGALRGFSKITRDI 377 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 ++ + + L +A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ G G Sbjct: 378 TDRRAAEMALGNAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSAG--GQK 435 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 ++ +I R+G +L ++N++LDI+KIE+G++ L+ EP+ L A+ EA++LV A + Sbjct: 436 AHV---GHILRAGQHLLTLINEVLDIAKIEAGRLPLNIEPIRLAGALQEALALVSPMAAD 492 Query: 682 KRILIR--TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 I ++ + A +I I AD + + Q+ LN+LSNAI + GQ+ I + + Sbjct: 493 AGIQLQPLPALAADIG-IAADPQRLTQVLLNLLSNAIKYNQPQGQVSIE-VKVEGPRIGV 550 Query: 740 RVRDTGVGMTNYELEKAMKPF---GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V DTG G+ +L + KPF G PN EG+GLGL L+K++++ G+ + + Sbjct: 551 AVCDTGKGIPADKLGQLFKPFERLGADPNV-----EGSGLGLALSKSLLEKMDGQLSVHT 605 Query: 797 TPAKGTLIEIIFP 809 G+ + P Sbjct: 606 QQGIGSRFTLELP 618 >gi|126175349|ref|YP_001051498.1| hybrid sensory histidine kinase BarA [Shewanella baltica OS155] gi|125998554|gb|ABN62629.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155] Length = 932 Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 94/246 (38%), Positives = 140/246 (56%), Gaps = 10/246 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A + S KS+FLA +SHE+RTPL +IGF+ +++K PL + + ++Y Sbjct: 283 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKT----PLHSSQ-VDYIK 337 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS +L I+ND+LD SK+E+GKM L P L E + + I+L+ A K + + Sbjct: 338 TIERSATNLLGIINDILDFSKLEAGKMVLENMPFGLRETIGDTITLISGSAQAKGLELVV 397 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDT 744 A N+P + D V QI N++ NAI FT SG ++ I S E+V+LR V DT Sbjct: 398 DIAPNVPDNVNGDAMRVCQIINNLVGNAIKFTDSGSVMVKIELQSQSEEQVVLRCDVVDT 457 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + + FGQ +S R GTGLGL + K +V+ G+ S+P KG+ Sbjct: 458 GIGIDESQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSPEKGSNF 517 Query: 805 EIIFPL 810 PL Sbjct: 518 WFSLPL 523 >gi|86145206|ref|ZP_01063537.1| putative histidine kinase [Vibrio sp. MED222] gi|85836783|gb|EAQ54903.1| putative histidine kinase [Vibrio sp. MED222] Length = 1067 Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 99/293 (33%), Positives = 161/293 (54%), Gaps = 21/293 (7%) Query: 520 DLRQTLEKITLGSTKEEKLLSL------RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 D R +L+K+ G K+E LSL R+ I++ ++ D K++ + Sbjct: 339 DTRPSLDKLIQG--KDE--LSLFAQQVERLTIEREHAKEKLTIAKEDAERAKEDAEE--- 391 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK A + S KS FLA +SHEIRTPL +IG SE++ + PL P +Y + I+ S Sbjct: 392 AKDHAIQASKAKSSFLANMSHEIRTPLNGVIGISEILSD---TPL-TPTQRDYVDTIETS 447 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 L+L ++ND+LD SKIESG + + S+ E++ + S+V A E++I + + + Sbjct: 448 SQLLLSLINDILDFSKIESGMLLISPHSASIRESIYDIASIVAPKAKEQKISVNVDISPD 507 Query: 694 IP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMT 749 P R++ D ++QI +N +SNA+ FT GG + I T + + V LR VRDTG+G+ Sbjct: 508 TPARVMIDDHRLRQILMNFMSNAVKFTAEGGVTLSIQTLNKAENNVTLRFSVRDTGIGID 567 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + ++ +PF Q +S + GTGLGL ++ +V+ G+ + S KG+ Sbjct: 568 KQQQKQIFEPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGQIQLDSVKGKGS 620 >gi|304321087|ref|YP_003854730.1| sensory box histidine kinase/response regulator [Parvularcula bermudensis HTCC2503] gi|303299989|gb|ADM09588.1| sensory box histidine kinase/response regulator [Parvularcula bermudensis HTCC2503] Length = 662 Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 106/370 (28%), Positives = 178/370 (48%), Gaps = 30/370 (8%) Query: 457 ILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++E D GI + EG + S N ++ G+ ++IL K F F PS YL Sbjct: 284 VVEGVQDYGIFALTPEGEVASWNTGAERIKGWQADEILGKHFARFY----PSETRGYLPT 339 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLR---------IIIKKLPFSSC----YSLTMHDIS 562 Q LE+ T E++ +R +I+ L + ++ DI+ Sbjct: 340 -------QMLERARDHGTAEDEGWRVRKDGSRFWANVIVTALRDEAGELRGFAKVTRDIT 392 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E KQ + L A++ A S KS+FL+R SHE+RTP++AIIGF++V++ PR Sbjct: 393 ERKQSEEALKAAREAAVLASQAKSEFLSRTSHELRTPMSAIIGFAQVLELDHDDL--APR 450 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + I ++ +L ++NDLLD+S IE+G L E VSL + + EA SL Sbjct: 451 HQTATTQILKAARHLLSLINDLLDVSSIEAGTQALKLEEVSLLDVLEEAYSLAAPIVKAA 510 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + + + + D R Q+ LN+L+NA + G + ++ N +V++ V Sbjct: 511 NLSFQFDQESAQYTVQCDRRRTIQVVLNLLTNAAKYNREGAYVALTVQPDGN-DVVVSVT 569 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK--FYIFSTPAK 800 D G G+ + + + PF ++ +Q R +G+GLGL L+K++V+ G+ F + P + Sbjct: 570 DDGAGIPDERIPRLFTPFDRLGQEKQRRTDGSGLGLALSKSLVETMGGRIGFRNATPPDR 629 Query: 801 GTLIEIIFPL 810 G P+ Sbjct: 630 GASFWFTLPI 639 >gi|237797729|ref|ZP_04586190.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020579|gb|EGI00636.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 782 Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 126/428 (29%), Positives = 221/428 (51%), Gaps = 36/428 (8%) Query: 398 ARLHTIQWNREN-SLAMTFIPFEKANQFPEN--MPQNGIEPEDVDTRINKRKMEI----E 450 AR+H +Q N + +L +P Q PE + Q G + + +R+ + E Sbjct: 222 ARVHQVQRNAQRLALGHPLLP-----QPPEKDEIGQLGTRLIEAGQLLAERERALRDNEE 276 Query: 451 VMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSV 508 ++L I+E D GI ++R+G + + N ++ GY ++I+ + F+VF L Q P Sbjct: 277 RLRL--IIEGVKDYGIFALDRDGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQH 334 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEW 564 + L E +++ R T E + K+ ++I S +S DIS+ Sbjct: 335 PDMALHEA-TVNGRYTEE--SWRRRKDGSRFWASVVITAQYDSHDELRGFSKITRDISDR 391 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + + LS A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ P I Sbjct: 392 RVAEIALSTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMD--SPASQRPQI 449 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +I R+G +L ++N++LDI++IE+G ++L+ EPV L + EA+ LV A + Sbjct: 450 ---GHILRAGQHLLKLINEVLDIARIEAGHVSLNLEPVPLSSVLREALVLVSPMATDAS- 505 Query: 685 LIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 I S +P ++AD + + Q+ LN+LSNAI + G++ I ++ V + V Sbjct: 506 -IELSELPQLPDELGVVADRQRLIQVLLNLLSNAIKYNRPDGKVRIEVGQSAG-RVTVSV 563 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG G+ + + KPF ++ + + EGTGLGL L+K+M++ G + +T +G Sbjct: 564 VDTGYGIAPERIGQLFKPFERLDANPSV--EGTGLGLALSKSMLEMMHGGLSVDTTLNEG 621 Query: 802 TLIEIIFP 809 + P Sbjct: 622 CRFTLELP 629 >gi|124009958|ref|ZP_01694623.1| MmoS [Microscilla marina ATCC 23134] gi|123984042|gb|EAY24420.1| MmoS [Microscilla marina ATCC 23134] Length = 670 Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 85/256 (33%), Positives = 143/256 (55%), Gaps = 6/256 (2%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y DI+E K + +L AK AE+ + KS+FLA +SHEIRTPL I+G ++I+ + Sbjct: 410 YLFIRFDITERKNAEKQLIVAKDKAEEANRLKSNFLANMSHEIRTPLNGILGVVQLIEIE 469 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 N + YA+ I +SG +L+ +N +LD+S+IE+ + + +E V++ E VS + Sbjct: 470 S----DNETMLHYAHLIGQSGQRLLNTINGILDLSRIEANRAEVSWEQVNIIELVSALVQ 525 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +++ AN + I + F ++L D ++Q+ N+L NAI FT GG + + Sbjct: 526 SLEVLANSRNIYLNIEFNLAQKQVLIDPYLLEQVLNNLLGNAIKFTERGG--VTLRLNDE 583 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 N + + V DTG+G+ + L++ +PF Q + R +G+GLGL +AK +V+ G Sbjct: 584 NNCLTIEVIDTGIGIEEHFLKEIFEPFKQESTGMERRFQGSGLGLAIAKKIVELMGGDIK 643 Query: 794 IFSTPAKGTLIEIIFP 809 + S G+ +IFP Sbjct: 644 VHSKKNLGSCFTVIFP 659 >gi|117925512|ref|YP_866129.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609268|gb|ABK44723.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1120 Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 82/260 (31%), Positives = 140/260 (53%), Gaps = 10/260 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ KQ + L AK++AE + KSDFLA +SH+IRTP+ A++G E++ Sbjct: 710 DINSLKQSEQALLQAKELAESANRAKSDFLATMSHDIRTPMNAVLGMVELLGESSL---- 765 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +P Y I R+G+ +L ++ND+LD+SKIE+G++ L + +L E V + +++ A Sbjct: 766 DPEQSHYLKIIRRAGSTLLSLINDILDLSKIEAGQLKLELDDFTLAETVEHVMDILRHKA 825 Query: 680 NEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 +EK + ++T +IP R+ D + ++QI LN+L NA+ FT G + ++ + + Sbjct: 826 SEKGLQLQTHL--HIPPQQRVRGDAQRLRQILLNLLGNAVKFTQQGS-VSLTLQQQPDGQ 882 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +V DTG G+ + + +PF Q + G+GLGL + +V A G ++ S Sbjct: 883 YSFQVADTGPGIAPHRQKIIFEPFVQEESGTHRHFGGSGLGLSICHKLVTAMRGTLWLKS 942 Query: 797 TPAKGTLIEIIFPLYDTSHP 816 G++ PL P Sbjct: 943 QLGHGSIFYFTLPLATAMEP 962 >gi|71907997|ref|YP_285584.1| PAS [Dechloromonas aromatica RCB] gi|71847618|gb|AAZ47114.1| PAS protein [Dechloromonas aromatica RCB] Length = 901 Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 94/280 (33%), Positives = 151/280 (53%), Gaps = 24/280 (8%) Query: 551 SSCYSLTMHDISEWKQEKNKLSH------------------AKKIAEKESSHKSDFLARV 592 S+ + + DISE K +L H ++ AE+ + KS+FLA++ Sbjct: 480 STLWHGFIADISEMKAMSAELEHYRDHLEQLVKVRTADLEASRAEAERLALAKSEFLAKM 539 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHEIRTPL ++G + + R G+ + +A I SGNL+L I+ND+LD SK+E+ Sbjct: 540 SHEIRTPLHGVLGMAHI--GGRNTSEGSKAHEAFAK-ITHSGNLLLGIINDILDFSKMEA 596 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNI 711 G + + + L ++E++ L+Q AN K++ ++ A N+P +D ++QI LN+ Sbjct: 597 GMLKIESTDIDLPAILAESMELMQERANAKKLSLQLRVAENLPAHCQSDSLRLRQILLNL 656 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 LSNA+ FT SG + ++ ++I +V DTG+G+T+ + K PF Q NS R Sbjct: 657 LSNAVKFTVSGSVTLDAS--FDGHQLIFKVSDTGIGITHEQSSKIFNPFEQGDNSTTRRF 714 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 GTGLGL + +V G ++ STP G+ EI P + Sbjct: 715 GGTGLGLAITSHLVKLMEGTIHLESTPDNGSRFEIRLPYH 754 >gi|304410179|ref|ZP_07391798.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|307302110|ref|ZP_07581868.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] gi|304351588|gb|EFM15987.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|306914148|gb|EFN44569.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] Length = 933 Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 94/246 (38%), Positives = 140/246 (56%), Gaps = 10/246 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A + S KS+FLA +SHE+RTPL +IGF+ +++K PL + + ++Y Sbjct: 284 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKT----PLHSSQ-VDYIK 338 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS +L I+ND+LD SK+E+GKM L P L E + + I+L+ A K + + Sbjct: 339 TIERSATNLLGIINDILDFSKLEAGKMVLENMPFGLRETIGDTITLISGSAQAKGLELVV 398 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDT 744 A N+P + D V QI N++ NAI FT SG ++ I S E+V+LR V DT Sbjct: 399 DIAPNVPDNVNGDAMRVCQIINNLVGNAIKFTDSGSVMVKIELQSQSEEQVVLRCDVVDT 458 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + + FGQ +S R GTGLGL + K +V+ G+ S+P KG+ Sbjct: 459 GIGIDESQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSPEKGSNF 518 Query: 805 EIIFPL 810 PL Sbjct: 519 WFSLPL 524 >gi|153001659|ref|YP_001367340.1| hybrid sensory histidine kinase BarA [Shewanella baltica OS185] gi|151366277|gb|ABS09277.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185] Length = 933 Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 94/246 (38%), Positives = 140/246 (56%), Gaps = 10/246 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A + S KS+FLA +SHE+RTPL +IGF+ +++K PL + + ++Y Sbjct: 284 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKT----PLHSSQ-VDYIK 338 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS +L I+ND+LD SK+E+GKM L P L E + + I+L+ A K + + Sbjct: 339 TIERSATNLLGIINDILDFSKLEAGKMVLENMPFGLRETIGDTITLISGSAQAKGLELVV 398 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDT 744 A N+P + D V QI N++ NAI FT SG ++ I S E+V+LR V DT Sbjct: 399 DIAPNVPDNVNGDAMRVCQIINNLVGNAIKFTDSGSVMVKIELQSQSEEQVVLRCDVVDT 458 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + + FGQ +S R GTGLGL + K +V+ G+ S+P KG+ Sbjct: 459 GIGIDESQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSPEKGSNF 518 Query: 805 EIIFPL 810 PL Sbjct: 519 WFSLPL 524 >gi|217972408|ref|YP_002357159.1| hybrid sensory histidine kinase BarA [Shewanella baltica OS223] gi|217497543|gb|ACK45736.1| Hpt sensor hybrid histidine kinase [Shewanella baltica OS223] Length = 933 Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 94/246 (38%), Positives = 140/246 (56%), Gaps = 10/246 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A + S KS+FLA +SHE+RTPL +IGF+ +++K PL + + ++Y Sbjct: 284 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKT----PLHSSQ-VDYIK 338 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS +L I+ND+LD SK+E+GKM L P L E + + I+L+ A K + + Sbjct: 339 TIERSATNLLGIINDILDFSKLEAGKMVLENMPFGLRETIGDTITLISGSAQAKGLELVV 398 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDT 744 A N+P + D V QI N++ NAI FT SG ++ I S E+V+LR V DT Sbjct: 399 DIAPNVPDNVNGDAMRVCQIINNLVGNAIKFTDSGSVMVKIELQSQSEEQVVLRCDVVDT 458 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + + FGQ +S R GTGLGL + K +V+ G+ S+P KG+ Sbjct: 459 GIGIDESQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSPEKGSNF 518 Query: 805 EIIFPL 810 PL Sbjct: 519 WFSLPL 524 >gi|217972048|ref|YP_002356799.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223] gi|217497183|gb|ACK45376.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223] Length = 1792 Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 142/251 (56%), Gaps = 8/251 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 ++M D++E K ++L AK+ A+ S K DFLA +SHEIRTP+ AIIG S++ Sbjct: 1014 ISMVDMTELKLLSDELLLAKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTEL 1073 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + + Y I+R+ +L I+ND+LD SKIE+GK+++ P LD + + + Sbjct: 1074 ----DKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMF 1129 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTS 733 A K+I + + A N+PR +L D + Q+ +N+++NAI FT G ++ +S Sbjct: 1130 SEKAAHKQIELLFAVAPNVPRYLLGDSLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQ 1189 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 +++V+LR VRD+G+G+T + K K F Q S + GTGLGL + K +V+ GK Sbjct: 1190 DDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGGK 1249 Query: 792 FYIFSTPAKGT 802 + S G+ Sbjct: 1250 IGVESQLGHGS 1260 >gi|218676627|ref|YP_002395446.1| putative histidine kinase [Vibrio splendidus LGP32] gi|218324895|emb|CAV26666.1| putative histidine kinase [Vibrio splendidus LGP32] Length = 1067 Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 99/293 (33%), Positives = 161/293 (54%), Gaps = 21/293 (7%) Query: 520 DLRQTLEKITLGSTKEEKLLSL------RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 D R +L+K+ G K+E LSL R+ I++ ++ D K++ + Sbjct: 339 DTRPSLDKLIQG--KDE--LSLFAQQVERLTIEREHAKEKLTIAKEDAERAKEDAEE--- 391 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK A + S KS FLA +SHEIRTPL +IG SE++ + PL P +Y + I+ S Sbjct: 392 AKDHAIQASKAKSSFLANMSHEIRTPLNGVIGISEILSD---TPL-TPTQRDYVDTIETS 447 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 L+L ++ND+LD SKIESG + + S+ E++ + S+V A E++I + + + Sbjct: 448 SQLLLSLINDILDFSKIESGMLLISPHSASIRESIYDIASIVAPKAKEQKISVNVDISPD 507 Query: 694 IP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMT 749 P R++ D ++QI +N +SNA+ FT GG + I T + + V LR VRDTG+G+ Sbjct: 508 TPARVMIDDHRLRQILMNFMSNAVKFTAEGGVTLSIQTLNKAENNVTLRFSVRDTGIGID 567 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + ++ +PF Q +S + GTGLGL ++ +V+ G+ + S KG+ Sbjct: 568 KQQQKQIFEPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGQIQLDSVKGKGS 620 >gi|289678178|ref|ZP_06499068.1| PAS [Pseudomonas syringae pv. syringae FF5] Length = 425 Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 101/381 (26%), Positives = 176/381 (46%), Gaps = 30/381 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S++E+ D + + + +GII N+ + L G ++++ P F P+ + + Sbjct: 36 SLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAPCKNFF--TDPASADAAIKR 93 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIII---KKLPFSSCYSLTMHDISEWKQEKNKLS 572 +LS E E ++S + ++ D++E K+ + L Sbjct: 94 VLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFA-AARDVTERKRFERTLE 152 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 E S KS+FLA +SHE+RTPL A+IGFSE +++ G + + + Y I Sbjct: 153 EKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDMTDAQR-RYIGDIFN 211 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG +L ++ND+LD+SK+E+G M L E V LDE +S ++ +V+ A + I ++ Sbjct: 212 SGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAALQHIQLKLETEA 271 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST----------------------- 729 + D R KQI N+L+NA+ F+ GG + ++ Sbjct: 272 EFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAGLIDGDWPAYGFALP 331 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + + + L V DTG+G+ ++ K K F QI + + EGTGLGL + K + + + Sbjct: 332 SGNCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTGLGLAMVKQLTELHG 391 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G + S G + P+ Sbjct: 392 GCVAVASVKDLGARFVVWLPI 412 >gi|217969790|ref|YP_002355024.1| GAF sensor signal transduction histidine kinase [Thauera sp. MZ1T] gi|217507117|gb|ACK54128.1| GAF sensor signal transduction histidine kinase [Thauera sp. MZ1T] Length = 767 Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 88/263 (33%), Positives = 145/263 (55%), Gaps = 13/263 (4%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E + L AK AE KS FLA +SHE+RTPL +IIGF+ ++ + GPL + Sbjct: 498 AELAETNCALLAAKHAAESADRLKSAFLATMSHELRTPLNSIIGFTGILLQRLAGPLNDE 557 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + + D + +L L ++ND+LDISKIE+G++ + E + ++ + ++V+ A Sbjct: 558 QSRQLGMVQDSARHL-LALINDVLDISKIEAGELRIAHEAFDIAASIDKVAAIVRPLAER 616 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNE--- 735 KR+ ++ + D+R V+QIALN+L+NAI FT G + + + H ++ Sbjct: 617 KRLCLQVERMTGPLVMTGDMRRVEQIALNLLTNAIKFTEHGRVTVTLELESQHAADAGPE 676 Query: 736 -----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 V L V DTG+G+ + +LE +PF QI ++ + EGTGLGL + K +V G Sbjct: 677 RAGRPAVRLCVADTGMGIRHEDLELLFQPFRQIDSTLSRQHEGTGLGLTICKRLVALMGG 736 Query: 791 KFYIFSTPAKGTLIEIIFPLYDT 813 + + S P +G+ + P Y+T Sbjct: 737 EITVDSEPGRGSRFTVTLP-YET 758 >gi|298531136|ref|ZP_07018537.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509159|gb|EFI33064.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 840 Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 106/377 (28%), Positives = 175/377 (46%), Gaps = 21/377 (5%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL------EQNTP 506 QL +I ++ D I ++ EG I N +FGY E+I+ K L EQ+ Sbjct: 276 QLQAITDSAQDAIVLMGPEGEIAYWNPMAESIFGYTAEEIVGKDLHNILAPARYHEQHLK 335 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566 + H+ + +T+E L E +SL + L + DI+ K Sbjct: 336 A-FQHFQQTGRGDAIGKTIELSALDRDGREFPISLSLSAVSLQNRWHAVGIVRDITRQKD 394 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + K+ A+ AE + KS+FLA +SHEIRTP+ I+G ++++ +E Sbjct: 395 AEEKIVKARDEAEAANRAKSEFLANMSHEIRTPINGIMGMMQLLEATSLD-------VEQ 447 Query: 627 ANYIDR---SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 A Y+ S + +++D+LD+S+IE+G+M + E + + L + EK Sbjct: 448 AQYVQMGLTSARRLTRLLSDILDLSRIEAGQMEIRQEEFDVRKLCFSVTELFMVTCREKN 507 Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVIL 739 I + S +P IL D ++QI N++ NA+ FT G + + + +V+L Sbjct: 508 IALEYSLDPQLPEILLGDETRLQQILFNLVGNALKFTEQGRVQVNWHLMKRRERDIQVLL 567 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+GMT + KPF Q N+ + +G GLGL + K +V+ G+ + S P Sbjct: 568 TVSDTGIGMTPHRAGDLFKPFVQAENAYTRKYQGAGLGLSIVKRLVELMHGEVTVESMPD 627 Query: 800 KGTLIEIIFPLYDTSHP 816 G+ I+ PL P Sbjct: 628 AGSTFNILLPLKVPEQP 644 >gi|296133877|ref|YP_003641124.1| integral membrane sensor signal transduction histidine kinase [Thermincola sp. JR] gi|296032455|gb|ADG83223.1| integral membrane sensor signal transduction histidine kinase [Thermincola potens JR] Length = 534 Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 85/245 (34%), Positives = 142/245 (57%), Gaps = 2/245 (0%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 +K +++ EK + K++FLA SHE+RTPLTAII F+E++ ++ GPL N + +Y Sbjct: 284 QKRQMAEINLQLEKANRLKNEFLANTSHELRTPLTAIIAFTELLLDEETGPLNNMQR-DY 342 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 N I+ S +L+ +N+LLD++KIE+GK +H E VS+ + S + + K+ + Sbjct: 343 INEINESSQQLLNYINNLLDLAKIEAGKFEVHREAVSISDLCSSVLRKTEPIFKVKKQQV 402 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVILRVRDTG 745 +NIP + D + Q+ +N+LSNA FTP G+I + + + ++VI+ V D G Sbjct: 403 IIDVEDNIPPVYVDPPKMMQVLINLLSNAHKFTPEDGRIELRARMNDRRDQVIVSVSDNG 462 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 VG+++ LE + F Q+ N + +GTGLGL L K +V+ + G+ + S +G+ Sbjct: 463 VGISSENLELIFEKFRQVNNRPEPLYQGTGLGLALVKHIVEMHGGQVKVESILGQGSTFY 522 Query: 806 IIFPL 810 PL Sbjct: 523 FSIPL 527 >gi|24372448|ref|NP_716490.1| sensory box histidine kinase/response regulator [Shewanella oneidensis MR-1] gi|24346431|gb|AAN53935.1|AE015531_1 sensory box histidine kinase/response regulator [Shewanella oneidensis MR-1] Length = 1765 Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 87/251 (34%), Positives = 142/251 (56%), Gaps = 8/251 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 ++M D++E K ++L AK A+ S K DFLA +SHEIRTP+ AIIG S++ + Sbjct: 1011 VSMVDMTELKLLSDELLVAKDEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTQL 1070 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + + Y I+R+ +L I+ND+LD SKIE+GK+++ LD + + + Sbjct: 1071 ----DKKQKNYLEKIERASQSLLSIINDILDFSKIEAGKLDIENVSFQLDTMLEDLSDMF 1126 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTS 733 A +K+I + + A N+PR +L D + Q+ +N+++NAI FT G ++ +S Sbjct: 1127 SERAAQKQIELLFAVAPNVPRHLLGDPLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQ 1186 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 N++V+LR VRD+G+G+T + K K F Q S + GTGLGL ++K +V+ G Sbjct: 1187 NDDVVLRFSVRDSGIGLTQEQQSKLFKSFTQADTSTTRKYGGTGLGLAISKQLVELMGGS 1246 Query: 792 FYIFSTPAKGT 802 + S G+ Sbjct: 1247 IGVESQLGHGS 1257 >gi|327542873|gb|EGF29329.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47] Length = 784 Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 155/263 (58%), Gaps = 7/263 (2%) Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + + T+ D++E K+++ +L +++IA + KS+FLA +SHEIRTP+ AI+G+++V+ Sbjct: 344 TSFDGTVADVTERKRQEERLQRSEQIALAANQSKSEFLANMSHEIRTPMAAILGYADVL- 402 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 G L +P I R+G +L ++ND+LD+S+IE+GK+++ E V L V + Sbjct: 403 ---LGHLEDPDNRNCVMIIKRNGEHLLSLINDILDLSRIEAGKLSVDAESVPLPRLVGDI 459 Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIIST 729 SL+Q+ A+EK + + F +P+ I D ++Q+ +N++ NAI FT G ++ + Sbjct: 460 QSLMQVRADEKNVDFQVEFEGRVPQSIETDPTRLRQVLINLIGNAIKFTDEGSVRLKVRF 519 Query: 730 THTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 ++ V+ + DTG+G++ + ++ KPF Q S + G+GLGL +++ +++ Sbjct: 520 MKGADPPVVEFSIVDTGIGISKEQQDRLFKPFSQGDASVTRKYGGSGLGLAISQRLIEMM 579 Query: 789 MGKFYIFSTPAKGTLIEIIFPLY 811 G+ + S +G+ + P++ Sbjct: 580 DGEMSLESELGEGSTFFVRLPVH 602 >gi|298675081|ref|YP_003726831.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288069|gb|ADI74035.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 747 Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 139/513 (27%), Positives = 226/513 (44%), Gaps = 54/513 (10%) Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYK-------SVDDIEIAGGLST 368 E EN VD P FV HGN NP+ +T+Y ++ D+ + Sbjct: 253 ESENKFRSYVDYAPFWIFVIDRHGNYVDVNPTASSMTEYTMNELLSMNIVDLHPSDAYEQ 312 Query: 369 L-LDAPKLSDNNAIK---PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 + L +L D +I P + DR A ++ N + L T Sbjct: 313 VNLVFNELVDTGSISTELPFITKNGDRRIWIVEA----VKLNEDRFLGFT---------- 358 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQ-----LCSILEATSDGIAIINREGIILSTNR 479 T I +RK+E + ++ +++E +D I + + +G IL N Sbjct: 359 ---------------TDITERKIEEDKVKESEQRFRTLIEHAADAIIVHDFDGNILYVNE 403 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD---LRQTLEKITLGSTKEE 536 + GY + +L T F V S D L +T K + G+ Sbjct: 404 LACESLGYIKDKLLSMNVTDFDPYVDVDVFRDKYWNKTSPDTSYLVETYHKRSDGTIYPV 463 Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 ++ RI + P + + DI+ KQ ++ L +AK A + KSD +A VSHE+ Sbjct: 464 EVRLTRIDLGGKPAILGF---VRDITMQKQTEDNLVYAKMEAYAANQAKSDMIANVSHEL 520 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPLT IIGFS+V+ + G L + + +Y + I G + +I+N++LD+SKI+SG+++ Sbjct: 521 RTPLTTIIGFSDVLLKGKAGDLNDSQE-KYLSKIHDRGQQLHNIINEMLDLSKIDSGELD 579 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716 + E +++ E S V A++K + I T + I AD +K I N+L N++ Sbjct: 580 VSCEYIAVHELFENLKSNVYPIASKKGLTIETKINQRVDYIYADELKLKHILYNLLYNSV 639 Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 FT G I I N V D+G+G+ N +L + +PF Q+ + GTGL Sbjct: 640 KFTDDGS-ITIKLDLDENNNYKFSVVDSGIGIPNEKLNQIFEPFKQLDTGTSRKYSGTGL 698 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GL L K +V+ + G ++ S G+ P Sbjct: 699 GLTLVKRLVELHGGNIWVESEVGTGSKFTFTIP 731 >gi|196229798|ref|ZP_03128662.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196226124|gb|EDY20630.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 528 Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 104/365 (28%), Positives = 184/365 (50%), Gaps = 8/365 (2%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L +I++++ D I N I+ S N++ ++FG+ E+++ +P + + H L Sbjct: 20 LPAIIDSSEDAIVSKNLHSIVTSWNKSAERIFGFTAEEMIGQPISRLFPPDRMEEETHIL 79 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKL 571 + I + + + E I + +E +SL I + K S DI+ K +L Sbjct: 80 SRITAGERVEHFETIRVRKDGKEIDVSLTISPVRDKTGKIVGASKIARDITGQKDAARRL 139 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 + A + ++ K DFLA +SHE+RTPLTAI+G+ +++K + P + +E I+ Sbjct: 140 AQAHEDLKRADRLKIDFLATLSHELRTPLTAILGWIQILKEEAT-PADLAQGLEV---IE 195 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 R+ L ++ DLLD+S+IE+GK++L + V L V+ A+ V+ A+ K I + + A Sbjct: 196 RNVRLQSQLIEDLLDMSRIEAGKVSLDLQRVDLSAVVNAAVQTVRPTADAKDIRLTSLLA 255 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 + + D ++QI N+L+NAI FTP+ G+I + T H + V + V D G G+ Sbjct: 256 DVDGVTMGDKNRLQQIVWNLLTNAIKFTPTHGRIQV-TMHRAKSNVEVIVSDNGQGIAPE 314 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-AKGTLIEIIFPL 810 L+ F Q S + G G+GL +A+ + + + G + S KG + P+ Sbjct: 315 FLDHVFDRFRQADASTTRKHGGLGIGLSIARHLAELHGGHLKVSSLGLGKGASFTLSLPM 374 Query: 811 YDTSH 815 H Sbjct: 375 LSAHH 379 >gi|222086713|ref|YP_002545247.1| two-component sensor histidine kinase/response regulator hybrid protein [Agrobacterium radiobacter K84] gi|221724161|gb|ACM27317.1| two-component sensor histidine kinase/response regulator hybrid protein [Agrobacterium radiobacter K84] Length = 1092 Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 106/367 (28%), Positives = 185/367 (50%), Gaps = 31/367 (8%) Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDI-LRKPFTVFLEQNT--------PSVMN 510 A S G+ I+ ++GII+ N A++ + P + + + K ++ + P + Sbjct: 423 AMSQGLLIL-QDGIIMLANDALTDMLLVPADCLAVGKHWSAAFDHCAARGDFGADPEALR 481 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 E ++ D ++ +G E+ + L + + S +++ + D++E K+ + + Sbjct: 482 FAWRENMAADKPVSMIFRVVG----ERWIQLEAAVSE---SRRWTVVLTDVTEMKKREAE 534 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L +E KS+FLA +SHEIRTP+ ++G +E++ + R + + I Sbjct: 535 LQLLLARSEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTDL----DARQKTFIDII 590 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRILIR 687 +SGN +L I+ND+LD SKI++G+M L F+P EAV + +L+ A EK I + Sbjct: 591 VKSGNALLTIINDILDFSKIDAGQMRLRKAAFDPA---EAVEDVATLLSSPAAEKDIELL 647 Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVIL--RVRD 743 +P +L D +QI N+L NAI FT G ++ + + N EV+L RV D Sbjct: 648 VRATPAVPAMVLGDAGRFRQIVTNLLGNAIKFTERGHVLVEVDSQPIDNGEVMLTLRVED 707 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G++ +L+ + F Q+ S R EGTGLGL + +VD G + S KG+ Sbjct: 708 TGLGISKEKLDSIFEKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYLEVDSEWGKGST 767 Query: 804 IEIIFPL 810 + P+ Sbjct: 768 FTVHLPM 774 >gi|302188804|ref|ZP_07265477.1| PAS [Pseudomonas syringae pv. syringae 642] Length = 576 Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 104/381 (27%), Positives = 177/381 (46%), Gaps = 30/381 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S++E+ D + + + +GII N+ + L G ++++ P F P+ + + Sbjct: 187 SLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAPCKNFF--TDPASADAAIKR 244 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIII---KKLPFSSCYSLTMHDISEWKQEKNKLS 572 +LS E E ++S + ++ D++E K+ + L Sbjct: 245 VLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFA-AARDVTERKRFERTLE 303 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 E S KS+FLA +SHE+RTPL A+IGFSE +K+ G + + + Y I Sbjct: 304 EKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDAQR-RYIGDIFN 362 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG +L ++ND+LD+SK+E+G M L E V LDE +S ++ +V+ A + I ++ Sbjct: 363 SGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAALQHIQLKLETEA 422 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST--THTSNEEVI------------ 738 + + D R KQI N+L+NA+ F+ GG + ++ S +I Sbjct: 423 DFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAGLIDGDWPTYGFALP 482 Query: 739 ---------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 L V DTG+G+ ++ K K F QI + + EGTGLGL + K + + + Sbjct: 483 SGDCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTGLGLAMVKQLAELHG 542 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G + S G + P+ Sbjct: 543 GCVAVASVKDLGARFVVWLPI 563 >gi|149277505|ref|ZP_01883646.1| GAF sensor hybrid histidine kinase [Pedobacter sp. BAL39] gi|149231738|gb|EDM37116.1| GAF sensor hybrid histidine kinase [Pedobacter sp. BAL39] Length = 938 Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 141/252 (55%), Gaps = 11/252 (4%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T +I E +++ +L AK++AE+ S KS+FLA +SHEIRTPL +IGF++++ + Sbjct: 522 TFQNIHEHTKQRTELKKAKELAEQASMAKSEFLANMSHEIRTPLNGVIGFTDLVLKTKLS 581 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P+ +Y+ AN S N +L I+ND+LD SKIESGK+ L E +L E ++A++++ Sbjct: 582 PV-QEQYLRIAN---ESANALLGIINDILDFSKIESGKLELDIESCNLYELGNQAVNIIT 637 Query: 677 LYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQI-----IISTT 730 A K + + S ++ P I AD ++Q+ +N+L NA+ FT GQI + Sbjct: 638 FQAQSKDLKVLFSIPGDLPPYIYADSLRLRQVLINLLGNAVKFTDH-GQIELKIKFVGVK 696 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + VRDTG+G+ + + + F Q R GTGLGL ++ ++ Sbjct: 697 DSGHFVFRFEVRDTGIGIKLDKQGQIFEAFSQEDGYTTKRYGGTGLGLTISNQLLGLMGS 756 Query: 791 KFYIFSTPAKGT 802 K + S+P KG+ Sbjct: 757 KLQVKSSPGKGS 768 >gi|257487363|ref|ZP_05641404.1| two-component sensor/regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330988052|gb|EGH86155.1| two-component sensor/regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009038|gb|EGH89094.1| two-component sensor/regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 576 Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 108/390 (27%), Positives = 183/390 (46%), Gaps = 34/390 (8%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S++E+ D + + + +GII N+ + L G ++++ P F P+ + + Sbjct: 187 SLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAPCKNFF--TDPASADAAIKR 244 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIII---KKLPFSSCYSLTMHDISEWKQEKNKLS 572 +LS E E ++S + ++ D++E K+ + L Sbjct: 245 VLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFA-AARDVTERKRFERTLE 303 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 E S KS+FLA +SHE+RTPL A+IGFSE +K+ G + + + Y I Sbjct: 304 EKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDAQR-RYIGDIFN 362 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG +L ++ND+LD+SK+E+G M L EPV L+E +S ++ +V+ A +RI ++ Sbjct: 363 SGQHLLSLINDILDLSKVEAGMMTLELEPVDLEELLSNSLLIVREQAALQRIQLKLETEA 422 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--VI------------ 738 + + D R KQI N+L+NA+ F+ GG + ++ S + VI Sbjct: 423 DFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSFAQAGVIEGDWPAHTFPLP 482 Query: 739 ---------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 L V DTG+G+ ++ K K F QI + + EGTGLGL + K + + + Sbjct: 483 SSEYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTGLGLAMVKQLTELHG 542 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 G + S G + P+ P +C Sbjct: 543 GCVAVASVKDLGARFVVWLPI----RPPEC 568 >gi|254693343|ref|ZP_05155171.1| sensor histidine kinase [Brucella abortus bv. 3 str. Tulya] Length = 609 Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 138/245 (56%), Gaps = 3/245 (1%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++++ K E E K LA VSHE+RTPL +IIGFS+++ ++ L + R EYA Sbjct: 313 DEIAMLKAELESERIGKGRLLATVSHELRTPLNSIIGFSDMLTHEIGSKLASDRQREYAG 372 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +SG+ +L++VN +LD S++E+G ++ + +AV +++ A +K + Sbjct: 373 LIHQSGHYLLELVNAVLDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCH 432 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---RVRDTG 745 N + ++AD R+V+QI LN+ +NA+ FT SGG + I + + V DTG Sbjct: 433 RVGNGVGELVADRRAVQQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTG 492 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ +L++ PF + NS EG+GLGL + K +V+ + G + S P +GT++ Sbjct: 493 IGIEPEDLQRIGTPFVRAGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVM 552 Query: 806 IIFPL 810 I PL Sbjct: 553 IRLPL 557 >gi|110639166|ref|YP_679375.1| multi-sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC 33406] gi|110281847|gb|ABG60033.1| multi-sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC 33406] Length = 1222 Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 112/376 (29%), Positives = 189/376 (50%), Gaps = 18/376 (4%) Query: 444 KRKMEIEVMQ----LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 K++ EI + + +I E+ D + G I + + +L GY E+I+ K + Sbjct: 571 KKQWEITIQESEEKFRNIFESFQDIYYRTDLSGYITMISPSGCELSGYTQEEIIGKHISE 630 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLE-KITL-GSTKEEKLLSLRIIIKKLPFSSCYSLT 557 F TP + + E+L + E + + G + + ++R+I Sbjct: 631 FF--TTPKQQVNLIREVLKTGRVKNYETNVNIKGGESIQSISNIRLIYNNEGKPIGVDGV 688 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 DI+ K+ +L HAK+IAEK K +FLA +SHEIRTP+ +IG +++ P Sbjct: 689 ARDITFLKKASQELYHAKEIAEKSLKVKENFLANMSHEIRTPMNGVIGMIDLLNET---P 745 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 L + +Y I +S +L+I+ND+LD+SKIE+GKM L P+S+++ V + +L Sbjct: 746 LMEEQR-KYVQTIKKSSETLLNILNDILDLSKIEAGKMQLRLAPISIEQTVEKLHALFYQ 804 Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A K I + S +N+P+ +LAD + QI N+ SNAI FT G + I + S ++ Sbjct: 805 QATLKNIDLLYSIDSNVPKVVLADETRLLQILSNLTSNAIKFTDQGS-VRIQISLQSKKD 863 Query: 737 VILRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++ ++R DTG+G+ +L F Q+ NS GTGLGL ++K + G+ Sbjct: 864 LVNKIRVNISDTGIGIAQDKLNVLFGYFNQVDNSSSKSYGGTGLGLAISKELSKLMNGEI 923 Query: 793 YIFSTPAKGTLIEIIF 808 + + KG++ F Sbjct: 924 GVQTEANKGSVFWFTF 939 >gi|220908923|ref|YP_002484234.1| Cache sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865534|gb|ACL45873.1| Cache sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 970 Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 85/246 (34%), Positives = 131/246 (53%), Gaps = 5/246 (2%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q +L HA++ AE + KS FLA +SHE+RTP+ AIIG+SE++ + L ++ Sbjct: 459 QRTAELEHARQAAEAANQAKSTFLANMSHELRTPMNAIIGYSEMLIEEA-ADLEPEEFVP 517 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I +G +L ++ND+LD+SKIE+G+M+L+ E SL + I+ +Q + Sbjct: 518 DLQKIQAAGKHLLSLINDILDLSKIEAGRMDLYLETFSLQSLLDGVIATIQPLLEKNSNT 577 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDT 744 + ++ + ADL V+Q N+LSNA FT G I+ T T ++ I +V DT Sbjct: 578 LEVKAPTDLGSMHADLTKVRQSLFNLLSNACKFTDRG---TITLTVTRQDDAINFKVSDT 634 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+GMT ++ + +PF Q S + GTGLGL + G + STP GT Sbjct: 635 GIGMTPDQMARLFQPFTQADASTTRKYGGTGLGLTITNRFCQMMGGNITLESTPGVGTTF 694 Query: 805 EIIFPL 810 + PL Sbjct: 695 TVSLPL 700 >gi|194292534|ref|YP_002008441.1| two-component sensor response receiver component, histidine kinase [Cupriavidus taiwanensis LMG 19424] gi|193226438|emb|CAQ72387.1| two-component sensor response receiver component, histidine kinase [Cupriavidus taiwanensis LMG 19424] Length = 1102 Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 89/285 (31%), Positives = 147/285 (51%), Gaps = 16/285 (5%) Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 E + L +R++ + ++D++E ++ + +L A + A+ + KS FLA +SH Sbjct: 468 ETRYLEVRLVQITYDVRAALLCALNDVTEARRGEARLREAIRAADAANRAKSSFLATMSH 527 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 EIRTPL ++G E++ R +PR + + + ++DI+ND+LD SKIE+G+ Sbjct: 528 EIRTPLNGMLGSIELLSLSRL----DPRQRDQLAVMQHASQSLIDIINDVLDFSKIEAGQ 583 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR----ILADLRSVKQIALN 710 M+L P LDE V E A KR+ + N P ++AD ++QI N Sbjct: 584 MSLQPRPCRLDEVVEEVTRNFAAEAARKRLRL---LCINDPSLSEPVMADAVKLEQILNN 640 Query: 711 ILSNAIHFTPSGGQIIIS----TTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPN 765 ++SNA+ FT G I+ + + H E V LRV DTG+G+ ++ + +PF Q Sbjct: 641 LISNAVKFTEQGKVIVTARRKRSAHGGGAEGVELRVVDTGIGIAAHDQRRLFEPFVQAEQ 700 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 S GTGLGL + + +V+ G+ + S P G+ + PL Sbjct: 701 SDTRHYGGTGLGLSICRRLVELMRGEIRVVSEPGLGSCFIVSLPL 745 >gi|23016213|ref|ZP_00055971.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 788 Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 90/262 (34%), Positives = 143/262 (54%), Gaps = 8/262 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ K ++ + AK+IAE+ + KSDFLA +SHEIRTP+ AIIG S + + Sbjct: 31 QDITAVKAAEDAIRAAKEIAEEATKAKSDFLANMSHEIRTPMNAIIGMSHLALQTKL--- 87 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + Y + RSG +L I+ND+LD SKIE+GKM + L++ + +LV L Sbjct: 88 -DKKQRNYIEKVHRSGENLLGIINDILDFSKIEAGKMTMESIDFRLEDVMDNLANLVGLK 146 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-- 735 A ++ + + + A +IP ++ D + QI +N+ +NA+ FT G I+ + +E Sbjct: 147 AEDRGLELLFNVAPDIPSALIGDPLRLGQILINLGNNAVKFTEKGEIIVGAELVERSEDQ 206 Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E+ VRD+G+GMT + K K F Q S + GTGLGL ++K +V+ G+ ++ Sbjct: 207 AELHFWVRDSGIGMTPEQCGKMFKSFSQADTSTTRKYGGTGLGLAISKTLVELMDGRIWV 266 Query: 795 FSTPAKGTLIEIIFPLYDTSHP 816 S KG+ + SHP Sbjct: 267 ESEAGKGSTFHFHVRVGVQSHP 288 >gi|71736609|ref|YP_273435.1| two-component sensor/regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557162|gb|AAZ36373.1| two-component hybrid sensor and regulator alr3120 [Pseudomonas syringae pv. phaseolicola 1448A] Length = 576 Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 108/390 (27%), Positives = 183/390 (46%), Gaps = 34/390 (8%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S++E+ D + + + +GII N+ + L G ++++ P F P+ + + Sbjct: 187 SLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAPCKNFF--TDPASADAAIKR 244 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIII---KKLPFSSCYSLTMHDISEWKQEKNKLS 572 +LS E E ++S + ++ D++E K+ + L Sbjct: 245 VLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFA-AARDVTERKRFERTLE 303 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 E S KS+FLA +SHE+RTPL A+IGFSE +K+ G + + + Y I Sbjct: 304 EKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDAQR-RYIGDIFN 362 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG +L ++ND+LD+SK+E+G M L EPV L+E +S ++ +V+ A +RI ++ Sbjct: 363 SGQHLLSLINDILDLSKVEAGMMTLELEPVDLEELLSNSLLIVREQAALQRIQLKLETEA 422 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--NEEVI------------ 738 + + D R KQI N+L+NA+ F+ GG + ++ S + VI Sbjct: 423 DFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSFAHAGVIEGDWPAHTFPLP 482 Query: 739 ---------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 L V DTG+G+ ++ K K F QI + + EGTGLGL + K + + + Sbjct: 483 SSDYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTGLGLAMVKQLTELHG 542 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 G + S G + P+ P +C Sbjct: 543 GCVAVASVKDLGARFVVWLPI----RPPEC 568 >gi|87309014|ref|ZP_01091152.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] gi|87288357|gb|EAQ80253.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] Length = 618 Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 85/258 (32%), Positives = 141/258 (54%), Gaps = 4/258 (1%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E K +L A + AE + KS+FLA +SHEIRTP+TAIIG++E ++ Sbjct: 195 TELKLTNEQLVEASRAAEAANRSKSEFLANMSHEIRTPMTAIIGYAEELRETGEIERAPK 254 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + + I R+G+ +L ++ND+LD+SKIE+GK++++ +P S VS+ ++L+ L A++ Sbjct: 255 ERVFALDTILRNGHHLLQVINDVLDLSKIEAGKLDVYMQPASPVRIVSDVLALMHLRASQ 314 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEV 737 K + + F +P I+ D+ ++QI +N++ NAI FT G + + + N + Sbjct: 315 KGLRLENEFCGPLPETIVTDVTRLRQILINLIGNAIKFTDKGTVSLRTKLIDIGSDNPRL 374 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V D+G+GMT EL + PF Q NS R GTGLGL ++ + + G S+ Sbjct: 375 EFEVVDSGIGMTEDELRRVFVPFEQANNSMSRRYGGTGLGLSISIRLTELLGGSMRCESS 434 Query: 798 PAKGTLIEIIFPLYDTSH 815 G+ D S+ Sbjct: 435 LGHGSYFHFTIATGDLSN 452 >gi|186686369|ref|YP_001869565.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186468821|gb|ACC84622.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 878 Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 110/366 (30%), Positives = 184/366 (50%), Gaps = 38/366 (10%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN----TPSVMNHY 512 + E+ G+A N +G ++ N A +L GY E+ FT+ + N TP Sbjct: 372 LFESNLIGVAFWNVDGFVIDANDAFLQLAGYTHEE-----FTLLGKVNWQEFTP------ 420 Query: 513 LTEILSLDLRQTLEKITLGSTK-EEK------------LLSLRIIIKKLPFSSCYSLTMH 559 E LD R LE T G +K EK +L + ++ + L + Sbjct: 421 -IEYKYLDDRAILEVQTTGVSKIYEKEYIHRNGKRVPIVLGIALLNDSQEHGVAFVLDIT 479 Query: 560 DISEWKQEKNKLSHAKKIAEKES----SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 D ++E ++L ++ A +E+ K +FLA +SHE+RTPL I+G+S++++ ++F Sbjct: 480 DRKLAEKECDRLLQCERTARQEAEIANQIKDEFLAVLSHELRTPLNPILGWSKMLRTRKF 539 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 R +E I+R+ L ++ DLLD+S+I GK+NL+ PV+L V A+ V Sbjct: 540 DQQTTNRALET---IERNAKLQTQLIEDLLDVSRILQGKLNLNICPVNLVMVVEAALETV 596 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +L A K I I+T F ++ +++ D ++Q+ N+LSNA+ FTP+GG++ I SN Sbjct: 597 RLAAQAKSIQIQTIFDASLGQVMGDPNRLQQVVWNLLSNAVKFTPTGGRVGIRLMEASN- 655 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++ ++V DTG G+ L F Q + G GLGL + + +V+ + GK Sbjct: 656 QIQIQVSDTGKGINPDFLPYVFDYFRQADGTTTRTFGGLGLGLAIVRKVVEMHGGKVQA- 714 Query: 796 STPAKG 801 +P G Sbjct: 715 ESPGDG 720 >gi|160873991|ref|YP_001553307.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195] gi|160859513|gb|ABX48047.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195] gi|315266220|gb|ADT93073.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678] Length = 1786 Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 142/251 (56%), Gaps = 8/251 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 ++M D++E K ++L AK+ A+ S K DFLA +SHEIRTP+ AIIG S++ Sbjct: 1014 ISMVDMTELKLLSDELLLAKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTEL 1073 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + + Y I+R+ +L I+ND+LD SKIE+GK+++ P LD + + + Sbjct: 1074 ----DKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMF 1129 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTS 733 A K+I + + A N+PR +L D + Q+ +N+++NAI FT G ++ +S Sbjct: 1130 SEKAAHKQIELLFAVAPNVPRYLLGDSLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQ 1189 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 +++V+LR VRD+G+G+T + K K F Q S + GTGLGL + K +V+ GK Sbjct: 1190 DDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGGK 1249 Query: 792 FYIFSTPAKGT 802 + S G+ Sbjct: 1250 IGVESQFGHGS 1260 >gi|114046681|ref|YP_737231.1| hybrid sensory histidine kinase BarA [Shewanella sp. MR-7] gi|113888123|gb|ABI42174.1| Hpt sensor hybrid histidine kinase [Shewanella sp. MR-7] Length = 935 Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 93/246 (37%), Positives = 142/246 (57%), Gaps = 10/246 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A + S KS+FLA +SHE+RTPL +IGF+ +++K PL + + ++Y N Sbjct: 286 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKT----PLHSSQ-VDYIN 340 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS +L I+ND+LD SK+E+GKM L P L E + E I+L+ A K + + Sbjct: 341 TIERSATNLLAIINDILDFSKLEAGKMVLEKMPFGLRETLGETITLISGSAQAKGLELVV 400 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDT 744 A N+P + D V QI N++ NAI FT SG ++ + + ++E+V+LR V DT Sbjct: 401 DIAPNVPDNVNGDAMRVCQIINNLVGNAIKFTDSGSVLVKLELQNQTDEQVVLRCDVIDT 460 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + + + FGQ +S R GTGLGL + K +V+ G+ S KG+ Sbjct: 461 GIGIDDSQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSAVDKGSNF 520 Query: 805 EIIFPL 810 PL Sbjct: 521 WFTLPL 526 >gi|254457993|ref|ZP_05071420.1| sensor histidine kinase/response regulator fusion protein [Campylobacterales bacterium GD 1] gi|207085386|gb|EDZ62671.1| sensor histidine kinase/response regulator fusion protein [Campylobacterales bacterium GD 1] Length = 798 Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 110/383 (28%), Positives = 191/383 (49%), Gaps = 33/383 (8%) Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV-FLEQNTPS 507 +++ Q+ ++ + + +IN EG +KL GY ++I+ K + FL +N Sbjct: 300 LDIAQVLIMVLDNNKNVTMINTEG---------AKLLGYSKDEIIGKNWIENFLPKNIQL 350 Query: 508 VMNHYLTEILSLDLRQ-TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS---------LT 557 +N ++I+ + E L + E KL+ + +S+ + + Sbjct: 351 EINELASDIIEEKEKYPNYENYVLTKSGELKLILWK-------YSTLFDDQGNTIGLLTS 403 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 DI+E K+ +L+ AK AEK + KS+FLA +SHEIRTPL I+GF ++ + Sbjct: 404 GQDITEQKRTYLELNKAKYEAEKANKSKSEFLANMSHEIRTPLNGIMGFVNLL----YKD 459 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + + E I S ++DIVND+LD SKIESG +++ P ++ +A+S+ I L + Sbjct: 460 EKDIKKQEKLKIIKDSSYTLIDIVNDILDFSKIESGMLSIEKVPFNILDAISQTILLFRQ 519 Query: 678 YANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-E 735 A EK I I+ S + IP+ + D+ KQ+ N+LSNA+ F+ + ++ + N Sbjct: 520 RAKEKNITIKLSIDDKIPKFIEGDITRTKQVFSNLLSNALKFSNEDSDVKVNVNYLDNTN 579 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 E+ V D+GVG++ + + + F Q +S + GTGLGL + K +V+ GK + Sbjct: 580 EIYCEVLDSGVGISPSKTDTIFEAFEQEDSSTTRKYGGTGLGLSIVKQLVELMGGKIGVN 639 Query: 796 STPAKGTLIEIIFPLYDTSHPHD 818 S G+ P+ + D Sbjct: 640 SELGVGSTFYFTLPIIEAKEDID 662 >gi|126175702|ref|YP_001051851.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155] gi|125998907|gb|ABN62982.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155] Length = 1784 Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 142/251 (56%), Gaps = 8/251 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 ++M D++E K ++L AK+ A+ S K DFLA +SHEIRTP+ AIIG S++ Sbjct: 1014 ISMVDMTELKLLSDELLLAKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTEL 1073 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + + Y I+R+ +L I+ND+LD SKIE+GK+++ P LD + + + Sbjct: 1074 ----DKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMF 1129 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTS 733 A K+I + + A N+PR +L D + Q+ +N+++NAI FT G ++ +S Sbjct: 1130 SEKAAHKQIELLFAVAPNVPRYLLGDSLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQ 1189 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 +++V+LR VRD+G+G+T + K K F Q S + GTGLGL + K +V+ GK Sbjct: 1190 DDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGGK 1249 Query: 792 FYIFSTPAKGT 802 + S G+ Sbjct: 1250 IGVESQFGHGS 1260 >gi|113969453|ref|YP_733246.1| hybrid sensory histidine kinase BarA [Shewanella sp. MR-4] gi|113884137|gb|ABI38189.1| Hpt sensor hybrid histidine kinase [Shewanella sp. MR-4] Length = 935 Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 93/246 (37%), Positives = 142/246 (57%), Gaps = 10/246 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A + S KS+FLA +SHE+RTPL +IGF+ +++K PL + + ++Y N Sbjct: 286 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKT----PLHSSQ-VDYIN 340 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS +L I+ND+LD SK+E+GKM L P L E + E I+L+ A K + + Sbjct: 341 TIERSATNLLAIINDILDFSKLEAGKMVLEKMPFGLRETLGETITLISGSAQAKGLELVV 400 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDT 744 A N+P + D V QI N++ NAI FT SG ++ + + ++E+V+LR V DT Sbjct: 401 DIAPNVPDNVNGDAMRVCQIINNLVGNAIKFTDSGSVLVKLELQNQTDEQVVLRCDVIDT 460 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + + + FGQ +S R GTGLGL + K +V+ G+ S KG+ Sbjct: 461 GIGIDDSQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSAVDKGSNF 520 Query: 805 EIIFPL 810 PL Sbjct: 521 WFTLPL 526 >gi|254415523|ref|ZP_05029283.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196177704|gb|EDX72708.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1568 Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 86/253 (33%), Positives = 142/253 (56%), Gaps = 25/253 (9%) Query: 564 WKQEKNK----------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 W+QE + L A++ AE + KS+FLA +SHEIRTP+ A+IG + ++ + Sbjct: 877 WEQETRQRQQLTEQNVALEKARQTAEAATQAKSEFLATMSHEIRTPMNAVIGMTGLLLDT 936 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + RY +A I SG+ +L I+ND+LD SKIESGKM L +P L + EA+ Sbjct: 937 EL--TSDQRY--FAETIRNSGDALLTIINDILDFSKIESGKMELEEQPFELRTCIEEALD 992 Query: 674 LVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 L+ A EK + + + P +A D+ ++QI +N++SNA+ FTP+ G++++S T Sbjct: 993 LLTTKAAEKNLELAYLIDSQTPNWIAGDVTRLRQILVNLISNAVKFTPT-GEVLVSVTAQ 1051 Query: 733 --SNEE-------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 ++EE + V+DTG+G+ + + K F Q+ +S + GTGLGL + K Sbjct: 1052 ILADEEDRGDRYQLQFAVKDTGIGIPVDRIHRLFKSFSQVDSSTSRQYGGTGLGLAICKR 1111 Query: 784 MVDANMGKFYIFS 796 + + G+ ++ S Sbjct: 1112 LCEMMGGQMWVES 1124 >gi|117926677|ref|YP_867294.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610433|gb|ABK45888.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 874 Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 99/362 (27%), Positives = 177/362 (48%), Gaps = 23/362 (6%) Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 +I+ DG+ ++ G +LS N A +FGY +++ + T+ + + S + Y+ Sbjct: 242 ATIMHTVMDGLITMDSSGKVLSFNHAAEGIFGYAAAEVVGEQITMLMPEPYRSQHDDYVQ 301 Query: 515 EILSLDLRQTLEKITLGST--------KEEKLLSLRIIIKKLPFSS--CYSLTMHDISEW 564 L Q +GS K+ LL +R+ + ++ F + + D+SE Sbjct: 302 RYL-----QGAAPRVIGSAGRHVTAQRKDGALLPIRLSVNEMVFEGERLFVGLVADVSER 356 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 QE+ L AK+ AE + KS FLA +SHE+RTP+ I+G ++ ++R + + Sbjct: 357 LQEERALIEAKEQAEAANMAKSRFLAVMSHEVRTPMNGILGMLGLLNDRRL----DGQQQ 412 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E+ S +L ++ND+LD SKIE+G + L S ++ + L A K I Sbjct: 413 EWLATAQESAESMLTLLNDILDFSKIEAGHLELEQSAFSPEQILKGVHDLFLPRATAKGI 472 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---R 740 + N+P + D ++Q+ +N++SN I FT GG + E+ +L Sbjct: 473 TLELEQGANLPAWVQGDPGRLRQVLMNLVSNGIKFTHQGGVTMRVAQQAKREDSLLLQFE 532 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+D+G+G+ +L + +PF Q+ S + G+GLGL + + +VD G+ + S P+ Sbjct: 533 VQDSGIGIPPQQLTQLFQPFNQLDPSYSRKYGGSGLGLAICRHLVDLMGGEIRLESPPSG 592 Query: 801 GT 802 G+ Sbjct: 593 GS 594 >gi|307822230|ref|ZP_07652462.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307736796|gb|EFO07641.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 1268 Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 105/363 (28%), Positives = 191/363 (52%), Gaps = 33/363 (9%) Query: 457 ILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-----LEQNTPSVMN 510 ++E+ +D I +++ EG ++S N ++ GY E+I+ + F+ F +E+ TP Sbjct: 751 MVESVTDYAIVMLDPEGRVVSWNSGAQRIKGYSAEEIVGQHFSRFYPLEDIERGTPQRDL 810 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQ 566 +T R E K ++ + S Y+ D++E K+ Sbjct: 811 DIVTA------RGRFEDEGWRVRKNGSTFWANVVYTAIRDQSGNLRGYAKLTRDLTERKR 864 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 +L AK +AEK + KSDFL+ +SHE+RTPL AI+GF+++++ P + Sbjct: 865 LDQELERAKSVAEKANLAKSDFLSSMSHELRTPLNAILGFAQLLEAGSPPPTDAQKI--R 922 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + I ++G +L+++N++LD++ IESGK++L EPV+L + + E ++++ A ++ I + Sbjct: 923 LHQIIKAGWYLLELINEILDLALIESGKLSLSREPVALIDVIIECQAMIEPQAQQRDIKL 982 Query: 687 ------RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 T FA+ AD VKQ+ +N+LSNAI + G + + ++ E + + Sbjct: 983 TFIPFDETWFAS------ADRTRVKQVLINLLSNAIKYNREHGTVEVKCIESTPERLRIS 1036 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRG-EGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V+DTG G+ +L + +PF ++ Q+ G EGTG+GL + K +V+ G + ST Sbjct: 1037 VKDTGEGLAPEKLAQLFQPFNRL--GQESSGKEGTGIGLVVTKQLVELMGGAIGVESTVG 1094 Query: 800 KGT 802 G+ Sbjct: 1095 VGS 1097 >gi|254488875|ref|ZP_05102080.1| sensor histidine kinase/response regulator [Roseobacter sp. GAI101] gi|214045744|gb|EEB86382.1| sensor histidine kinase/response regulator [Roseobacter sp. GAI101] Length = 723 Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 114/406 (28%), Positives = 187/406 (46%), Gaps = 46/406 (11%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG-----------Y 487 D + K+E+ +L +E DG A N ++ NRA +F Sbjct: 66 DLTAAREKIELTERRLWQSIETIKDGFAFFNANNEMIMANRAYLAIFDGLEIICPGVNYV 125 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 + +L V P +TE L D I L + + KL+ ++ Sbjct: 126 TILQVLTDEGIVNTGNLCPKSWRRLMTERLQ-DTAPEPTVIHLWNGQHIKLID-----QR 179 Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 P SL + DI+ + + +L A IAE + KS FLA +SHEIRTP+ ++G + Sbjct: 180 SPSGDMVSLGL-DITATVEYERQLQEAHSIAESANRAKSAFLANMSHEIRTPMNGVVGMA 238 Query: 608 EVIK------NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 +V++ +QR Y + I SG +L I+ND+LD SKIE+ K++LH EP Sbjct: 239 DVLRDTDLTEDQRL----------YVDTIKNSGEALLVIINDVLDYSKIEAKKLDLHPEP 288 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTP 720 L+ A+ E I L+Q A EK + + + +P L D ++Q+ N+L NA+ FT Sbjct: 289 FDLERAIQEVIMLLQPLAREKGLEMALDYDLFMPTTLVGDPGRIRQVLTNLLGNAVKFT- 347 Query: 721 SGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 S G +++ T ++E V + + DTG+G+ ++ F Q+ N + + +GTG Sbjct: 348 SDGHVLVRVTGVPDKETGKVQVNIAIEDTGIGIAPDMVDHIFGEFNQVENERNRKFDGTG 407 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL-----YDTSHP 816 LGL +++ ++ G ++ S G+ PL T HP Sbjct: 408 LGLAISQRLIQMMEGDIWVTSEEQAGSCFGFKLPLEAHGEITTPHP 453 >gi|218512783|ref|ZP_03509623.1| probable two-component sensor histidine kinase protein [Rhizobium etli 8C-3] Length = 172 Score = 140 bits (353), Expect = 8e-31, Method: Composition-based stats. Identities = 59/122 (48%), Positives = 83/122 (68%) Query: 74 FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133 FVF P R RF W IDA G E+S E + +G +A +IG D++ + ++DP+ + Sbjct: 51 FVFRPNSRATRFVWKIDAEGRFNEVSHEFAEAVGPHASAIIGSAFSDIAALFNLDPDGKL 110 Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 ++L R++TW GKT LWP+EGT+L VP+DLAALP Y+RNR+F GFRGFG+V ++ DP Sbjct: 111 SEVLARRDTWSGKTILWPVEGTSLVVPVDLAALPTYTRNRDFDGFRGFGVVRLSDAQEDP 170 Query: 194 RA 195 A Sbjct: 171 LA 172 >gi|148251757|ref|YP_001236342.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1] gi|146403930|gb|ABQ32436.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1] Length = 745 Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 100/358 (27%), Positives = 167/358 (46%), Gaps = 16/358 (4%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S+ E D I + +G I+ N A ++ G E++L F+ L + S + T Sbjct: 112 SLFEQQGDLIVMRESDGTIIFVNDAYCRMAGLDRENLLGSQFSFDLLEQGDSALEPSGTR 171 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 + D R + S + ++ R ++ + D+++ + + L+ Sbjct: 172 VH--DQR-------IDSAIGPRWIAWREALVRSDAGHPAVQQCVGRDVTDRTETERALAE 222 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A+ A + KS FLA SHEIRTPL I+G S ++ + P YA + S Sbjct: 223 ARDQANAANRAKSRFLAMASHEIRTPLNGILGMSGLLLETQL----TPEQTTYAKAVRSS 278 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G ++ ++N+LLD SKIE+GK+ L +P +L + E L+ A K++ I Sbjct: 279 GEALMSLINELLDYSKIEAGKLALEAQPFALTALIEEITELLAPRAQGKQLEIAAYLDER 338 Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 +P + D ++Q+ LN+ NAI FT GG +I+ E+ +VRDTG+G+ Sbjct: 339 LPTWVTGDAARLRQVLLNLAGNAIKFTSKGGVALIAEPGIWPNEISFQVRDTGIGIAADA 398 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 E+ + F Q +S GTGLGL ++ +V G+ + S P G+ E+ PL Sbjct: 399 QERIFREFEQADDSVARSFGGTGLGLAISDRIVKRMGGRIALQSQPGAGSTFEVSVPL 456 >gi|20092758|ref|NP_618833.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19918052|gb|AAM07313.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 375 Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 90/257 (35%), Positives = 148/257 (57%), Gaps = 4/257 (1%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y + D++ K+ + L AKK AE + K+ F+ +SHE+RTPL ++IGFS+++ Sbjct: 120 YLVNTCDVNGQKELEITLLKAKKDAEATNRAKNSFIMNMSHELRTPLNSVIGFSDLLLEG 179 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 FGPL N + +Y N I SG +L+I+N+LLDIS++E+G+ L +E V + + + Sbjct: 180 AFGPL-NTKQSKYVNNILISGKNLLEIINNLLDISRLEAGEKTLKYENVDIASLIGDVRM 238 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + A+ KRI + ++ + AD+ ++QI N++SNAI FTP+ G+++IS Sbjct: 239 SLLSPASVKRITVELKIDPSVGNVRADITKLRQILYNLVSNAIKFTPAKGKVVISACK-- 296 Query: 734 NEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 E V+ ++V DTG+G++ EK PF Q +S G GLGL + + VD + GK Sbjct: 297 KEGVLEVKVSDTGIGLSKDSHEKIFMPFTQADSSAARGYGGAGLGLYIVRNFVDLHGGKI 356 Query: 793 YIFSTPAKGTLIEIIFP 809 ++ S KG++ P Sbjct: 357 WVDSEVGKGSIFTFTLP 373 >gi|304411121|ref|ZP_07392737.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|307301756|ref|ZP_07581514.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] gi|304350656|gb|EFM15058.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|306913794|gb|EFN44215.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] Length = 1784 Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 142/251 (56%), Gaps = 8/251 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 ++M D++E K ++L AK+ A+ S K DFLA +SHEIRTP+ AIIG S++ Sbjct: 1014 ISMVDMTELKLLSDELLLAKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTEL 1073 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + + Y I+R+ +L I+ND+LD SKIE+GK+++ P LD + + + Sbjct: 1074 ----DKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMF 1129 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTS 733 A K+I + + A N+PR +L D + Q+ +N+++NAI FT G ++ +S Sbjct: 1130 SEKAAHKQIELLFAVAPNVPRYLLGDSLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQ 1189 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 +++V+LR VRD+G+G+T + K K F Q S + GTGLGL + K +V+ GK Sbjct: 1190 DDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGGK 1249 Query: 792 FYIFSTPAKGT 802 + S G+ Sbjct: 1250 IGVESQFGHGS 1260 >gi|261213592|ref|ZP_05927873.1| integral membrane sensor signal transduction histidine kinase [Brucella abortus bv. 3 str. Tulya] gi|260915199|gb|EEX82060.1| integral membrane sensor signal transduction histidine kinase [Brucella abortus bv. 3 str. Tulya] Length = 532 Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 138/245 (56%), Gaps = 3/245 (1%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++++ K E E K LA VSHE+RTPL +IIGFS+++ ++ L + R EYA Sbjct: 236 DEIAMLKAELESERIGKGRLLATVSHELRTPLNSIIGFSDMLTHEIGSKLASDRQREYAG 295 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +SG+ +L++VN +LD S++E+G ++ + +AV +++ A +K + Sbjct: 296 LIHQSGHYLLELVNAVLDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCH 355 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---RVRDTG 745 N + ++AD R+V+QI LN+ +NA+ FT SGG + I + + V DTG Sbjct: 356 RVGNGVGELVADRRAVQQILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTG 415 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ +L++ PF + NS EG+GLGL + K +V+ + G + S P +GT++ Sbjct: 416 IGIEPEDLQRIGTPFVRAGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVM 475 Query: 806 IIFPL 810 I PL Sbjct: 476 IRLPL 480 >gi|56478892|ref|YP_160481.1| sensory transduction histidine kinase [Aromatoleum aromaticum EbN1] gi|56314935|emb|CAI09580.1| putative sensory transduction histidine kinase of highly complex domain structure [Aromatoleum aromaticum EbN1] Length = 1519 Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 108/393 (27%), Positives = 193/393 (49%), Gaps = 34/393 (8%) Query: 441 RINKRKMEIEVM-----QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 R+++R+ +E + ++ ++L+ + + IN +GI+ N AV +FGYP+ +++ + Sbjct: 713 RVDEREAALEALGAKKDEIRAVLDNLIECVVTINAQGIVQGANAAVEAVFGYPLGEVIGR 772 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE----EKL-----LSLRIIIK 546 ++ + + YL L R + GST+E KL + L + Sbjct: 773 NVSLLMPSPERERHDDYLARYLDTGARHVI-----GSTREVEGQHKLGHRIPMELSVAEY 827 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 ++ + T+ DISE K L+ A++ AE+ S KS FLA +SHEIRTP+ ++G Sbjct: 828 RVRDEQFFVGTLRDISERKAFIAALTRAREDAEQASRAKSAFLAAMSHEIRTPMNGVMGL 887 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 EV+ + + I S + +L I++D+LD SKIE+G++ L PVS+ + Sbjct: 888 IEVLARTSL----SEHQADLVATICGSSSTLLRIIDDILDFSKIEAGRLKLDVRPVSIGD 943 Query: 667 AV-SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ 724 V S A SL+ L A + + + +P R+ AD ++Q+ N++ NA+ F+ +G Q Sbjct: 944 LVESLAGSLLPLAARLD-VDLSVFVSPEVPERVEADEVRLRQVLYNLVGNAVKFS-AGRQ 1001 Query: 725 IIISTTHTSNE-------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 + ++ + + D G+G+ ++E+ PF Q S R GTGLG Sbjct: 1002 NVRGRVAVRVAVADVVPLQLAVSIVDNGIGIDPEKVEELFNPFTQAEASTTRRFGGTGLG 1061 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 L + + +VD G + S P +G+ + P Sbjct: 1062 LAICRRLVDLMEGGIKVRSEPGQGSTFTVTIPF 1094 >gi|288573392|ref|ZP_06391749.1| multi-sensor hybrid histidine kinase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569133|gb|EFC90690.1| multi-sensor hybrid histidine kinase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 1129 Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 87/259 (33%), Positives = 137/259 (52%), Gaps = 10/259 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M D++ Q +L AK+ AE+ + KS FLA +SHEIRTP+ A++G +E+ + Sbjct: 462 VMEDVTALIQNAVELRKAKEEAERANRAKSAFLANMSHEIRTPMNAVLGMTELALETTY- 520 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + EY I + ++DI+ND+LDISKIESG M + P L E ++ S + Sbjct: 521 ---DEDQREYLETIHEASCSLMDIINDILDISKIESGHMEIDSHPFDLGEVAWKSASYLA 577 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN- 734 A+ K + + + + D ++QI +N+LSNA+ FT G +I++S Sbjct: 578 KEAHGKGLELNVDIDEELAESYIGDSVRIRQIMVNLLSNAVKFTDEG-EILMSVKAMEKT 636 Query: 735 ---EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + V +R+ DTG+G++ E+ + PF Q S R GTGLGL + K +V+ GK Sbjct: 637 AKMDSVEIRIEDTGIGLSEKEIARIFSPFIQADVSTTKRYGGTGLGLSICKKLVEIMGGK 696 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + S P KG++ PL Sbjct: 697 LEVQSAPGKGSVFSFTIPL 715 >gi|114321577|ref|YP_743260.1| histidine kinase [Alkalilimnicola ehrlichii MLHE-1] gi|114227971|gb|ABI57770.1| histidine kinase [Alkalilimnicola ehrlichii MLHE-1] Length = 629 Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 145/253 (57%), Gaps = 13/253 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ +L A++ AE+ + KS FLA +SHE+RTPL AI+GF+ + P P Sbjct: 271 RERTAELEQARQSAEEANRAKSVFLANMSHELRTPLNAILGFARLAGQ---APQATPDQR 327 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E +++R+G +L ++ND+LD++KIESG+ L V L + +A+ ++ A K + Sbjct: 328 EQLGFVERNGEHLLSLINDVLDMAKIESGRQTLEEGVVDLPRTLEDAVEALRHRAEGKGL 387 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------V 737 + A ++PR IL+D R ++QI +N++SNA+ +T + G++++S S E + Sbjct: 388 TLTLEVAEDLPRHILSDGRKLRQILINLVSNAVKYTDA-GRVVLSARRQSAEPSGGHDGL 446 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 +L V DTG G+ + ++ +PF + + + EGTGLGLP+ + V+ G+ + ST Sbjct: 447 LLAVADTGRGIPVEDQDRVFEPF--VQSGRVGTTEGTGLGLPITREFVELMGGEIGLEST 504 Query: 798 PAKGTLIEIIFPL 810 +G+ + PL Sbjct: 505 SGEGSRFTVSLPL 517 >gi|298675480|ref|YP_003727230.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288468|gb|ADI74434.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 754 Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 116/390 (29%), Positives = 193/390 (49%), Gaps = 35/390 (8%) Query: 442 INKRKMEIEVMQ-----LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI---- 492 I +RK E ++ S+ E +D I I + +G IL N+ S+ GY +++ Sbjct: 374 ITERKQAEEALKESEKKFRSLFENANDAIFIHDLKGNILEVNQLASQRLGYSKDELTNIK 433 Query: 493 ---LRKPF---TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 L PF + NT H + E + +IT + LS RII Sbjct: 434 SMDLISPFYADNMKNRLNTIQKKGHGIFETV---------QITKNGSSIPVELSSRII-- 482 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLS-HAKKIAEKESSHKS------DFLARVSHEIRTP 599 + + DI+E K+ + KL+ +A ++A+ KS +FL+ VSHE++TP Sbjct: 483 EYEGKTAILALARDITERKRAERKLNEYANELAKANEELKSLDKMKDEFLSNVSHELKTP 542 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 LT+I G+S +I + G L N + N I R+ + +V+ L+ +S ++GK+ F Sbjct: 543 LTSIKGYSNIIYEETLGKL-NDEQKKTMNTIVRNSERLRRLVDSLIYMSMSQAGKIEYSF 601 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 EPV + + + +AI N+K +++ + + NIP+I D + + N+L NA FT Sbjct: 602 EPVQISKVIDDAIEDTNFEINKKGLILNKNVSENIPQINGDKAKLTDMLTNLLDNATKFT 661 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 SGG+I + +E + ++V DTGVG+ + + F QI +S + + GTGLGL Sbjct: 662 SSGGEITVE-AFEEDEHIHIKVTDTGVGIPEDLIPYLFQRFYQIDSSIRRKYGGTGLGLY 720 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + K +VDA+ G +I S KGT + + P Sbjct: 721 ICKLIVDAHYGNIWIDSIEGKGTTVHVKLP 750 >gi|158333425|ref|YP_001514597.1| two-component hybrid histidine kinase sensor and regulator [Acaryochloris marina MBIC11017] gi|158303666|gb|ABW25283.1| two-component hybrid histidine kinase sensor and regulator [Acaryochloris marina MBIC11017] Length = 905 Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 92/259 (35%), Positives = 147/259 (56%), Gaps = 10/259 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q +LS AK+ AE + K++FLA +SHE+RTPL AI+GFS++++++ G L + Sbjct: 412 EQRTEELSAAKEKAEIANHAKTEFLANMSHELRTPLNAILGFSQLLQSE--GNLTEAHH- 468 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I+RSG +L ++ND+L++SKIE+G+ ++ + L E + S++QL AN K I Sbjct: 469 SHVGIINRSGEHLLTLINDVLELSKIEAGQTVVNVSSLDLIELLETLQSMMQLKANAKSI 528 Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--- 739 + T++ +IP + D ++QI +N+L NAI FT G + + T T N E ++ Sbjct: 529 HLSTTYNPDIPHFIETDTIKLRQILINLLGNAIKFTKQGQVNLNVRTLETPNTEGLICLQ 588 Query: 740 -RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG G+ + LE PF Q QQ + EGTGLGLP+++ G + STP Sbjct: 589 FTVSDTGPGIDSSGLEAIFTPFVQTRTGQQSQ-EGTGLGLPISRKFARLLGGDITVDSTP 647 Query: 799 AKGTLIEIIFPLYDTSHPH 817 +G+ T+ P Sbjct: 648 NEGSAFHCTIQAKQTTMPQ 666 >gi|319781102|ref|YP_004140578.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166990|gb|ADV10528.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 779 Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 83/236 (35%), Positives = 126/236 (53%), Gaps = 7/236 (2%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE KS+FLA +SHEIRTP+ ++G +E++ PR + + I +SGN + Sbjct: 227 AEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTDL----TPRQKTFTDVIVKSGNAL 282 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696 L I+ND+LD SKI +G++ L P L EAV + +LV EK + + +P Sbjct: 283 LTIINDILDFSKINAGQLTLDPAPFRLSEAVEDVATLVSARVAEKNLELIVRVDPRLPAH 342 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR--DTGVGMTNYELE 754 ++ D +QI N+L NA+ FT G +I N+ V L++R DTG+G+ +L+ Sbjct: 343 VVGDAGRFRQIITNLLGNAVKFTEKGHVLIDVGGEIVNDVVQLKIRVEDTGIGIPAEKLQ 402 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F Q+ S R EGTGLGL +A +VD GK + S +G++ PL Sbjct: 403 NVFEKFAQVDGSSTRRHEGTGLGLAIAARLVDLMAGKIGVESEIGRGSVFWFAVPL 458 >gi|170741220|ref|YP_001769875.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168195494|gb|ACA17441.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 1596 Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 88/253 (34%), Positives = 142/253 (56%), Gaps = 7/253 (2%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y ++ D+SE +++ L A+ AE+ S K+DFLA +SHEIRTPL I+G+++++ + Sbjct: 1074 YVASVRDVSERQRQAEALELARDAAEQASRAKTDFLASMSHEIRTPLNGILGYTDLLLDD 1133 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G R A I +G +L IVND+LD SKIE+G++ L +P LD + +S Sbjct: 1134 PSLGGGQRR---QAERIQSAGAALLTIVNDILDFSKIEAGQIELDPQPFLLDALLDNTVS 1190 Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH 731 +V+ +A +K I + PR L D ++QI LN+L+NA+ FT +G + ++ Sbjct: 1191 VVRGFARKKAIAVAVRLDGAAPRTLVGDQDRLRQILLNLLNNAVKFTHAGSVTLAVACES 1250 Query: 732 TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 LR V DTG+G+ + E+ + F Q+ NS + GTGLGL ++K +V+ Sbjct: 1251 PPGATACLRFAVSDTGIGIPRDKHERLFQRFSQVDNSIRRDFGGTGLGLAISKNLVELMG 1310 Query: 790 GKFYIFSTPAKGT 802 G + S ++GT Sbjct: 1311 GTIGVESVVSEGT 1323 >gi|289663522|ref|ZP_06485103.1| two-component system sensor protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 636 Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 81/238 (34%), Positives = 144/238 (60%), Gaps = 7/238 (2%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE + K++FL+R SHE+RTPL AI+G+++V++ L P + + +I +G + Sbjct: 269 AETANRAKTEFLSRSSHELRTPLNAILGYAQVLEMD----LPEPGHRRHLQHILGAGRHL 324 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ +LLDI++IE+ +++L EP+S+ AV EA+ L+ A++ I +R S + + Sbjct: 325 LGLITELLDIARIEADQLDLSPEPISVRAAVHEALGLIAPDADKYGITLRPSSIDGPWTV 384 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 AD + ++Q+ LN+LSNA+ F +GGQ+ +S E+V + V D G G+T ++E+ Sbjct: 385 RADAQRLRQVLLNLLSNAVKFNRTGGQVQVS-AQADGEQVRITVADQGAGLTPAQIERLF 443 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 PF ++ +++ EGTGLGL L+K +++A G+ + S+ + G I P + H Sbjct: 444 TPFERL-GAERSAVEGTGLGLALSKRLIEAMGGQIGVDSS-SDGARFWISLPQGEHQH 499 >gi|116253334|ref|YP_769172.1| two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257982|emb|CAK09080.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 1118 Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 136/255 (53%), Gaps = 8/255 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K + +L AE KS+FLA +SHEIRTP+ ++G +E++ Sbjct: 559 DVTELKGREEELRQLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNL---- 614 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + R + + I +SGN +L I+ND+LD SKI++G+M L + EAV + +L+ +A Sbjct: 615 DTRQKTFVDIIVKSGNALLTIINDILDFSKIDAGQMKLRKAAFDITEAVEDVATLLSSHA 674 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEV 737 EK I + A ++P ++ D +QI N++ NA+ FT G + + + E+ Sbjct: 675 AEKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVGFQPAAGGEI 734 Query: 738 I--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +R+ DTG+G+ + +LE F Q+ S R EGTGLGL + +VD G + Sbjct: 735 MACIRIEDTGIGIPSEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYLNVE 794 Query: 796 STPAKGTLIEIIFPL 810 S KG++ I P Sbjct: 795 SEWGKGSVFTINLPF 809 >gi|332142599|ref|YP_004428337.1| Response regulator receiver:ATP-binding region, ATPase-like protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327552621|gb|AEA99339.1| Response regulator receiver:ATP-binding region, ATPase-like protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 891 Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 138/246 (56%), Gaps = 11/246 (4%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L+ +K AEK ++ KS FLA +SHEIRTP+ IIG E+ + Q P Y++ A Y Sbjct: 379 LTESKIKAEKATASKSIFLANMSHEIRTPMNGIIGLIELAQQQELSPTVRG-YLDKAAY- 436 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG +++ ++ND+LD SKIE+GK+ + SL I+++ L A EK + + + Sbjct: 437 --SGQILISVINDILDFSKIEAGKLKIEEVSFSLHSLFDNLIAVIALRAKEKNLSVHFNV 494 Query: 691 ANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDT 744 +P +++ D + QI +NI +NA+ FT G +I I+ T NE+ + +R+ D+ Sbjct: 495 NPMLPPQVIGDPLRIAQIIMNIGNNAVKFTEQG-RIEIAFDGTLNEKGNRLNLTMRITDS 553 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+GM+ +L+K KPF Q S + GTGLGL + + + G+ ST KG+ Sbjct: 554 GIGMSKAQLDKIFKPFTQADGSTNRKYGGTGLGLAIVSQLTELMNGRIDASSTMGKGSTF 613 Query: 805 EIIFPL 810 E+ PL Sbjct: 614 EVNLPL 619 >gi|237809486|ref|YP_002893926.1| hybrid sensory histidine kinase BarA [Tolumonas auensis DSM 9187] gi|237501747|gb|ACQ94340.1| Hpt sensor hybrid histidine kinase [Tolumonas auensis DSM 9187] Length = 908 Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 147/246 (59%), Gaps = 9/246 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ Q F + +Y + Sbjct: 276 ELDMAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT----RQLFKTQLSLHQRDYLST 331 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+ S +L I+ND+LD SK+E+GK+ L P ++ E +++ ++L+ A++K++ + Sbjct: 332 IEHSAKNLLSIINDILDFSKLEAGKLTLENIPFNIREMINDTVTLLAPSAHDKKLELSLL 391 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL---RVRDT 744 + IP ++A D ++QI NI+ NAI FT G I +STT + +++ +L R+RDT Sbjct: 392 VSQPIPDLVAGDPLRLQQIITNIVGNAIKFTEQGMVNIHVSTTPSIDQQKVLLRFRIRDT 451 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+GM + +L + +PF Q +S R GTGLGL +++ +++ G + S P +G+ Sbjct: 452 GIGMDDEQLMRLFQPFIQGDSSISRRYGGTGLGLVISQKLIEQMDGSMQVHSEPNQGSEF 511 Query: 805 EIIFPL 810 I PL Sbjct: 512 TITMPL 517 >gi|170741016|ref|YP_001769671.1| integral membrane sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168195290|gb|ACA17237.1| integral membrane sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 927 Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 108/388 (27%), Positives = 198/388 (51%), Gaps = 31/388 (7%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 R+ E + + L + +G A+ +R+ ++++ R L G + PF ++Q Sbjct: 264 REAEHQRLILEDAVACMQEGFALYDRDDRLVMANARYSEMLMGQSAAAAMGLPFETLIQQ 323 Query: 504 --------NTPSVMNH--YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 + + ++H ++ + L+ R GST E ++ + I K Sbjct: 324 VAARRDESDAEADLDHDAWIAQRLAEHRRS-------GSTTETRVRGRWLQIAKHRTHDG 376 Query: 554 YSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 ++T+ DI++ KQ + +L A+ AE+ + KS+FLA +SHE+RTPL AIIG+S++++ Sbjct: 377 GTVTLVMDITDLKQREIELDQARAEAERANQVKSEFLANMSHELRTPLNAIIGYSQMLRE 436 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 GN + I+ +G +LD++ND+LD+SKIE+GKM++ E +++ E + + Sbjct: 437 DAADD-GNDGAVADLTKIEGAGKHLLDLINDILDLSKIEAGKMDVFLEEINIPELLEDVR 495 Query: 673 SLVQLYA--NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 L++ A N+ R+++ + A R++ D+ +KQ LN+LSNA FT GG + +S Sbjct: 496 LLIEPVAARNDNRLVV--ACAAGASRMVTDVTKLKQSLLNLLSNAAKFT-KGGLLTLSVD 552 Query: 731 HTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + + V DTG+G++ ++ + + F Q NS + GTGLGL + ++ Sbjct: 553 PDPDRAGNLCFAVSDTGIGLSPEQVGRLFQAFQQADNSTTRKFGGTGLGLAITRSFARML 612 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 G + S G+ I P +HP Sbjct: 613 GGDIAVTSALGAGSTFVITLP----AHP 636 >gi|298529315|ref|ZP_07016718.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510751|gb|EFI34654.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 806 Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 84/265 (31%), Positives = 144/265 (54%), Gaps = 20/265 (7%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L D++ WK+ + +L A++ AE S K++FLA +SHEIRTPL I G +++K Sbjct: 407 LIREDLTAWKKTEQELVKARQEAEAASRVKTEFLANMSHEIRTPLNGIAGMLQLLKETSL 466 Query: 616 GPLGNPRYIEYANYID---RSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVS 669 +E Y+D +S + + +++D+LD+S+IE+G M +H F+P+ L +V+ Sbjct: 467 D-------MEQKEYVDLGIKSSHRLTRLLSDILDLSRIEAGHMTIHQEEFDPLELCSSVN 519 Query: 670 EAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 E L + K + + F P R++ D ++QI N++ NA+ FT GG + Sbjct: 520 E---LFAVTTRNKHLSLECIFQEGFPSRLVGDEARIQQILFNLVGNALKFTEKGGVQVSW 576 Query: 729 TTHTSN---EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + + + ++V + V+DTG+GM L++ KPF Q NS + +G GLGL + K +V Sbjct: 577 SLYAGDDTEQQVRITVQDTGIGMEQEVLQELFKPFVQAENSYTRKYQGAGLGLSIVKRLV 636 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810 + G + S P +G+ + PL Sbjct: 637 ELMHGNISVKSVPGQGSTFYVDLPL 661 >gi|152999371|ref|YP_001365052.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185] gi|151363989|gb|ABS06989.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185] Length = 1782 Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 142/251 (56%), Gaps = 8/251 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 ++M D++E K ++L AK+ A+ S K DFLA +SHEIRTP+ AIIG S++ Sbjct: 1014 ISMVDMTELKLLSDELLLAKEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTEL 1073 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + + Y I+R+ +L I+ND+LD SKIE+GK+++ P LD + + + Sbjct: 1074 ----DKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDSIPFQLDTMLEDLSDMF 1129 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTS 733 A K+I + + A N+PR +L D + Q+ +N+++NAI FT G ++ +S Sbjct: 1130 SEKAAHKQIELLFAVAPNVPRYLLGDSLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQ 1189 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 +++V+LR VRD+G+G+T + K K F Q S + GTGLGL + K +V+ GK Sbjct: 1190 DDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTGLGLAICKQLVELMGGK 1249 Query: 792 FYIFSTPAKGT 802 + S G+ Sbjct: 1250 IGVESQFGHGS 1260 >gi|157827614|ref|YP_001496678.1| histidine kinase sensor protein [Rickettsia bellii OSU 85-389] gi|157802918|gb|ABV79641.1| Histidine kinase sensor protein [Rickettsia bellii OSU 85-389] Length = 498 Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 89/242 (36%), Positives = 144/242 (59%), Gaps = 14/242 (5%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 EK SS + F A +SHE+RTPL AIIGFSE++ +++ P + YI+ I+ +G + Sbjct: 263 VEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSEK-DPEKSRNYIKD---INDAGKHL 318 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696 L ++ND+LD+SK + K+ + + L++ VS ++ LV+ A++ + N P+ Sbjct: 319 LSMINDILDLSKASADKLKVDSIDLDLNKLVSSSLILVKPRADQAGV----ELVNKSPKE 374 Query: 697 ---ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYE 752 I AD + +KQ+ LN+LSNA+ FT +GG + I+ +++ ++V DTG+G+ + Sbjct: 375 HIVIKADPKRLKQVFLNLLSNAVKFTNAGGSVTITMEKDELAKLVYIKVIDTGIGIEEKD 434 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 + K + FGQI + + EGTGLGLPL K +V+ GKF + S +GT I + F YD Sbjct: 435 IPKTLSTFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQSKINEGTTIILTFA-YD 493 Query: 813 TS 814 S Sbjct: 494 GS 495 >gi|121591221|ref|ZP_01678522.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 2740-80] gi|153818352|ref|ZP_01971019.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae NCTC 8457] gi|227081520|ref|YP_002810071.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae M66-2] gi|229505068|ref|ZP_04394578.1| hypothetical protein VCF_000274 [Vibrio cholerae BX 330286] gi|298498565|ref|ZP_07008372.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MAK 757] gi|121546919|gb|EAX57070.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 2740-80] gi|126511099|gb|EAZ73693.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae NCTC 8457] gi|227009408|gb|ACP05620.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae M66-2] gi|229357291|gb|EEO22208.1| hypothetical protein VCF_000274 [Vibrio cholerae BX 330286] gi|297542898|gb|EFH78948.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MAK 757] Length = 1331 Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 117/380 (30%), Positives = 199/380 (52%), Gaps = 28/380 (7%) Query: 441 RINKRKMEIEVMQLCS-ILEATSDGIAIINREGIILSTNRAVSKLFG-YPVEDILRKPFT 498 R+ +RK+ +E QL IL+AT + + ++ +G L+ N L G Y E I ++P Sbjct: 461 RLAERKV-LEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQE 519 Query: 499 VFLEQNTP--SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 +F + + +H LT+ S Q E + T ++ +++ + FS Sbjct: 520 IFPAEVAERFAAAHHVLTQQQS---SQNYEVSLVDYTGVQR----EMLVYEASFSDRADK 572 Query: 557 T------MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + D++E K+ +++L AK+ A+ S K DFLA +SHEIRTP+ AI+G + + Sbjct: 573 VNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLA 632 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 N PL + +Y I+ S +L I+ND+LD SK+E+GK+N+ +LD+ + Sbjct: 633 LNT---PLDTTQR-KYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDN 688 Query: 671 AISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS- 728 ++V L A EK I +IP ++ D + Q+ +N+ NA+ FT S G+I++S Sbjct: 689 VTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSA 747 Query: 729 -TTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + + ++V LR V+DTG+G+ +L+ F Q NS + GTGLGL ++K +V Sbjct: 748 RVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLV 807 Query: 786 DANMGKFYIFSTPAKGTLIE 805 + G+ + S KG+ E Sbjct: 808 ELMGGQITVHSEEGKGSTFE 827 >gi|163846054|ref|YP_001634098.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222523787|ref|YP_002568257.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163667343|gb|ABY33709.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222447666|gb|ACM51932.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 878 Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 104/381 (27%), Positives = 188/381 (49%), Gaps = 27/381 (7%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + + E Q+ +IL++ DG+ + + G ++S N A S++ P+E++L N Sbjct: 504 RQQKETSQIAAILQSLLDGVIVCDLYGGVISINPAASRILHRPLEELLL--------WNL 555 Query: 506 PSVMNHYL-TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 V+ YL + L L L + L E + + I+ + S + + E Sbjct: 556 RDVIQRYLGSHAAELPLDDLLRR-PLSVNGEARTFTTTAIVGGKTVNFSLSPVLKENDEL 614 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 L + E + K++F+ +SHE+RTP+TAI GF++++ G L + + Sbjct: 615 LGALLVLRDITREVEADRM-KNEFIGTMSHELRTPMTAIKGFTQLLAMGGLGQLNDTQR- 672 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E+ N I + +++++ND+L+I+KIESG ++L + + L EA+S I+ +Q + R Sbjct: 673 EFVNTIYSNTERMINLINDVLEITKIESGSIDLEWRSLHLAEALSGVIAELQPQITQHRH 732 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV------- 737 + S +P I AD + QI ++L NA+ +TP+GG I I+ N ++ Sbjct: 733 QLTISIPPGLPLIRADAMRLHQILYHVLLNAVKYTPAGGSITIAAREVMNIDIPEPIRST 792 Query: 738 --------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 +L + DTGVG+ +L + F + N ++ GTGLGL + K +V+ Sbjct: 793 LSDNRRYLLLSISDTGVGIRPEDLPRIFDRFFRGENLLKVEAGGTGLGLSIVKPLVELLG 852 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G+ ++ ST G+ II P+ Sbjct: 853 GRIWVESTVGVGSTFSIIMPI 873 >gi|315649482|ref|ZP_07902567.1| histidine kinase [Paenibacillus vortex V453] gi|315274955|gb|EFU38330.1| histidine kinase [Paenibacillus vortex V453] Length = 559 Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 141/253 (55%), Gaps = 9/253 (3%) Query: 555 SLTMHDIS-EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 S+ +H + E ++ ++L AK+ AE K++FLA +SHEIRTP+ +IG +++ + Sbjct: 138 SMQLHQKTLELEKINHELVQAKEAAEIAVKAKTEFLAMMSHEIRTPMNGVIGMIDLLMDS 197 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 EYA I S + +++I+ND+LD SK+ESGKM L P L V E Sbjct: 198 EL----QEEQREYATIIRNSADALVNIINDILDFSKMESGKMELEEYPFDLKSCVQEVFG 253 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH 731 L A++K + + IP + D+ ++Q+ +N++SNA+ FT GG +++S T Sbjct: 254 LFSGEASKKNLQLSYYIEERIPSMVFGDMGRLRQVLVNLVSNAVKFTNEGGVYLVVSLTQ 313 Query: 732 TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + + L V+DTG+G+++ ++++ KPF Q+ +S + GTGLGL + +++V Sbjct: 314 VEEDRLTLEFTVKDTGIGISSEKIDRLFKPFSQLDSSMTRKYGGTGLGLAICRSLVQMMG 373 Query: 790 GKFYIFSTPAKGT 802 G + S KG Sbjct: 374 GDITVESKENKGA 386 >gi|209966096|ref|YP_002299011.1| non-motile and phage-resistance protein [Rhodospirillum centenum SW] gi|209959562|gb|ACJ00199.1| non-motile and phage-resistance protein [Rhodospirillum centenum SW] Length = 744 Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 87/254 (34%), Positives = 134/254 (52%), Gaps = 2/254 (0%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI+ K + +L A AE + K+ FLA +SHE+RTPL AI+GFSE+I++ FG Sbjct: 472 TVQDITPQKAVQARLDQAVAQAEAANRAKTQFLATMSHELRTPLNAILGFSEIIRDGTFG 531 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + Y EYA ++ S + +LDI+ND+LD++K+ES + L EPV L+E V A+ V+ Sbjct: 532 QVSPGIYQEYAGHVFDSASHLLDIINDVLDLAKVESATVTLTPEPVPLEETVRRAVQTVR 591 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A ++RI + +LAD R++ Q NILSNA+ +P G + + + Sbjct: 592 PIARDRRISFAVQGGPAV-TVLADRRALLQSLYNILSNALRHSPENGTVEVR-LEPEDGF 649 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 L +RD G G L + +P+ N TGLG + A++ A G+ + Sbjct: 650 GALTIRDFGPGFPPDVLAELGQPYPGRRNVYVSAARSTGLGYAITAALLGAMGGEIEACN 709 Query: 797 TPAKGTLIEIIFPL 810 P G + PL Sbjct: 710 APDGGACVTFRLPL 723 >gi|42524006|ref|NP_969386.1| two-component hybrid histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39576214|emb|CAE80379.1| two-component hybrid histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 603 Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 81/252 (32%), Positives = 144/252 (57%), Gaps = 7/252 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E + + +L AK+ AE + KS+FLA +SHEIRTP+ +I+G SE++ + P Sbjct: 355 DITELHRYQQELERAKEAAEAGTRAKSEFLANMSHEIRTPMNSIMGMSELLLDTELSP-- 412 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + R ++ + R+ + +L+++ND+LD+SKIESG M + P S+ E+V A+ L+ + A Sbjct: 413 DQR--QFVTILTRASSSLLNLINDILDLSKIESGLMVIEKVPFSVRESVRRALELLMIRA 470 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 EK++ ++ +P +IL D +Q+ +N++ N + FT G + + ++ Sbjct: 471 VEKKLDLKLEIDPQVPEKILGDATRFQQVLINLIGNGLKFTTHGE--VRVQLKVNGHQLW 528 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V+DTG+GM +++ F Q +S R GTGLGL ++K +V+ G + S Sbjct: 529 VGVKDTGIGMAPEQMQGLFTRFSQGDSSITRRFGGTGLGLSISKQLVEKMGGTIGVTSEI 588 Query: 799 AKGTLIEIIFPL 810 +G++ PL Sbjct: 589 GQGSVFYFTLPL 600 >gi|330938948|gb|EGH42439.1| PAS protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 576 Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 101/381 (26%), Positives = 176/381 (46%), Gaps = 30/381 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S++E+ D + + + +GII N+ + L G ++++ P F P+ + + Sbjct: 187 SLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAPCKNFF--TDPASADAAIKR 244 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIII---KKLPFSSCYSLTMHDISEWKQEKNKLS 572 +LS E E ++S + ++ D++E K+ + L Sbjct: 245 VLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFA-AARDVTERKRFERTLE 303 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 E S KS+FLA +SHE+RTPL A+IGFSE +++ G + + + Y I Sbjct: 304 EKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDMTDAQR-RYIGDIFN 362 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG +L ++ND+LD+SK+E+G M L E V LDE +S ++ +V+ A + I ++ Sbjct: 363 SGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAALQHIQLKLETEA 422 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST----------------------- 729 + D R KQI N+L+NA+ F+ GG + ++ Sbjct: 423 EFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAGLIDGDWPTYGFALP 482 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + + + L V DTG+G+ ++ K K F QI + + EGTGLGL + K + + + Sbjct: 483 SGNCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTGLGLAMVKQLTELHG 542 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G + S G + P+ Sbjct: 543 GCVAVASVKDLGARFVVWLPI 563 >gi|149280707|ref|ZP_01886817.1| sensor histidine kinase/response regulator fusion protein [Pedobacter sp. BAL39] gi|149228531|gb|EDM33940.1| sensor histidine kinase/response regulator fusion protein [Pedobacter sp. BAL39] Length = 1160 Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 91/260 (35%), Positives = 136/260 (52%), Gaps = 16/260 (6%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q + +S K E S +KS+FLA +SHE+RTPL +I+ + ++K R L N I Sbjct: 469 EQAREAISLKAKELEVSSKYKSEFLANMSHELRTPLNSILILARILKENRPENL-NEDQI 527 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +YA I +GN +L ++ND+LD+SKIESGK++L EPV + SL A K I Sbjct: 528 KYAGVIHNAGNDLLTLINDILDLSKIESGKVDLILEPVKPESVAYSMESLFSELAKSKHI 587 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH------------ 731 T NN+P I+ D V+Q+A N+LSNA FTP G+I S Sbjct: 588 EFSTLLGNNLPDSIITDQSRVEQVAKNLLSNAFKFTPEQGKITFSIQRAAAGTLFYSDQL 647 Query: 732 --TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 TS + + + V DTG+G+ + + + F Q S + GTGLGL ++K + + Sbjct: 648 KDTSEDILAIAVTDTGIGIAESKQKLIFEAFQQEDGSTSRKYGGTGLGLSISKELANIMG 707 Query: 790 GKFYIFSTPAKGTLIEIIFP 809 G+ + S P +G+ P Sbjct: 708 GEIQLKSKPGEGSTFTFFIP 727 >gi|258517266|ref|YP_003193488.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257780971|gb|ACV64865.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 679 Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 101/360 (28%), Positives = 191/360 (53%), Gaps = 26/360 (7%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L +++++ D I ++ GI + K+ PV+ ++ P + P + YL Sbjct: 318 LQALIKSIDDIIFEVDENGIFKNVWTNSEKILLMPVDQVIGNPIQSII---APDKSDIYL 374 Query: 514 TEILSLDLRQTLE-------KITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISE 563 ++I +Q +E + + + + +RI P +S S++M DISE Sbjct: 375 SKI-----KQVIENQEPDVFEYMMDTLYGRRWYLVRIA----PIASELKSVSVSMRDISE 425 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K+ + + AK+ EK S KS FL+ +SHE+RTPL A++GFS++++ + PL N + Sbjct: 426 RKEMEKSIIAAKEETEKASMAKSQFLSNMSHELRTPLNAVLGFSQILQMDKSAPLDNSQS 485 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 E I ++GN +L ++N++LD++KIESGK+N+ EPV + + E ++ ++ A E Sbjct: 486 -ESVKEIVKAGNHLLMLINEILDLAKIESGKLNILIEPVKILPIIEETVAFIKPLAKEND 544 Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 I I + + + + +LAD ++Q+ LN+ SNA+ + + G++ ++ + + Sbjct: 545 IEIAINPRDCMEQYVLADSIRLRQVLLNLFSNAVKYNYNSGKVSFYCEKI-DKFIRFNIL 603 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D+G+G+ + +L PF ++P + EGTG+GL AK +V+ G + S +G+ Sbjct: 604 DSGLGIPSAQLPAIFDPFYRLPITAN-NVEGTGIGLAAAKQLVELMGGNINVKSQEGQGS 662 >gi|56750891|ref|YP_171592.1| two-component sensor kinase [Synechococcus elongatus PCC 6301] gi|81299455|ref|YP_399663.1| GAF sensor hybrid histidine kinase [Synechococcus elongatus PCC 7942] gi|8953946|gb|AAF82192.1|AF258464_1 circadian input kinase [Synechococcus elongatus PCC 7942] gi|56685850|dbj|BAD79072.1| two-component sensor kinase [Synechococcus elongatus PCC 6301] gi|81168336|gb|ABB56676.1| GAF sensor hybrid histidine kinase [Synechococcus elongatus PCC 7942] Length = 754 Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 126/227 (55%), Gaps = 4/227 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +FLA +SHE+RTPLT +IG S + FGPL R EY I SG +L+++ND+ Sbjct: 384 KGEFLATMSHELRTPLTCVIGMSSTLLRWAFGPLTE-RQREYIKAIHDSGEHLLELINDI 442 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA--NEKRILIRTSFANNIPRILADLR 702 LD+S+IE+GK L P SL ++ ++ +Q A E ++++ N + AD + Sbjct: 443 LDLSQIEAGKAALQVRPFSLSRLATQTLNTLQEKARLGEIQLMLDLQLNNRVDVFRADPK 502 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 ++QI +N+LSNA+ FT G + + + I +V DTG+G+ E + + F Q Sbjct: 503 RLRQILINLLSNAVKFTEPQGTVFLRVWR-EGDRAIFQVSDTGIGIPESEQAQLFQKFQQ 561 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + S + + GTGLGL L K +V+ + G I ST +G+ + P Sbjct: 562 LDTSIRRQYGGTGLGLALTKQLVELHGGHIQIESTVGQGSTFTVWIP 608 >gi|330975736|gb|EGH75802.1| PAS protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 576 Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 101/381 (26%), Positives = 176/381 (46%), Gaps = 30/381 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S++E+ D + + + +GII N+ + L G ++++ P F P+ + + Sbjct: 187 SLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAPCKNFF--TDPASADAAIKR 244 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIII---KKLPFSSCYSLTMHDISEWKQEKNKLS 572 +LS E E ++S + ++ D++E K+ + L Sbjct: 245 VLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFA-AARDVTERKRFERTLE 303 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 E S KS+FLA +SHE+RTPL A+IGFSE +++ G + + + Y I Sbjct: 304 EKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDMTDAQR-RYIGDIFN 362 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG +L ++ND+LD+SK+E+G M L E V LDE +S ++ +V+ A + I ++ Sbjct: 363 SGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAALQHIQLKLETEA 422 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST----------------------- 729 + D R KQI N+L+NA+ F+ GG + ++ Sbjct: 423 EFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAGLIDGDWPAYGFALP 482 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + + + L V DTG+G+ ++ K K F QI + + EGTGLGL + K + + + Sbjct: 483 SGNCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTGLGLAMVKQLTELHG 542 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G + S G + P+ Sbjct: 543 GCVAVASVKDLGARFVVWLPI 563 >gi|116749734|ref|YP_846421.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116698798|gb|ABK17986.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 870 Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/275 (33%), Positives = 149/275 (54%), Gaps = 18/275 (6%) Query: 546 KKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 +++P +S Y + D++E ++EK K AK AE S KS+FLA +SHEIRTP+ Sbjct: 346 RRVPGTSGGGYYYEGLLVDVTE-RREKEKAERAKDTAEAASKAKSEFLANMSHEIRTPMN 404 Query: 602 AIIGFSEVIKNQRFGPL-GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 AI+GF+ ++ PL +PR Y I SG ++ ++ND+LD+SKIE+GKM + +E Sbjct: 405 AILGFTSLLS-----PLITDPRQKNYLQSIQSSGKNLMSLINDILDLSKIEAGKMEIQYE 459 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719 PV L + + +K + TS A+++P +L D ++QI N++ NA+ FT Sbjct: 460 PVVLRSVFVDLEKVFSWIIQDKGLQFITSIASDVPECVLLDEVRLRQILFNLVGNALRFT 519 Query: 720 PSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 S G I +S + +++ V DTG+G+ + + F Q + GT Sbjct: 520 ES-GWIRLSAWREAGAGDGSFCLVMVVEDTGMGIQPEAHNRIFESFRQQSGQRARVYGGT 578 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GLGL ++K++V+ G + S P G++ EI P Sbjct: 579 GLGLTISKSLVEMLGGTISVQSRPGAGSVFEIRLP 613 >gi|91205043|ref|YP_537398.1| histidine kinase sensor protein [Rickettsia bellii RML369-C] gi|91068587|gb|ABE04309.1| Histidine kinase sensor protein [Rickettsia bellii RML369-C] Length = 498 Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 89/242 (36%), Positives = 144/242 (59%), Gaps = 14/242 (5%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 EK SS + F A +SHE+RTPL AIIGFSE++ +++ P + YI+ I+ +G + Sbjct: 263 VEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSEK-DPEKSRNYIKD---INDAGKHL 318 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696 L ++ND+LD+SK + K+ + + L++ VS ++ LV+ A++ + N P+ Sbjct: 319 LSMINDILDLSKASADKLKVDSIDLDLNKLVSSSLILVKPRADQAGV----ELVNKSPKE 374 Query: 697 ---ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYE 752 I AD + +KQ+ LN+LSNA+ FT +GG + I+ +++ ++V DTG+G+ + Sbjct: 375 HIVIKADPKRLKQVFLNLLSNAVKFTNAGGSVTITMEKDELAKLVYIKVIDTGIGIEEKD 434 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 + K + FGQI + + EGTGLGLPL K +V+ GKF + S +GT I + F YD Sbjct: 435 IPKTLSTFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQSKINEGTTIILTFA-YD 493 Query: 813 TS 814 S Sbjct: 494 GS 495 >gi|154254026|ref|YP_001414850.1| PAS/PAC sensor hybrid histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154157976|gb|ABS65193.1| PAS/PAC sensor hybrid histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 744 Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 94/277 (33%), Positives = 148/277 (53%), Gaps = 24/277 (8%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D+++ K + KL+ A + A++ + KS FLA +SHEIRTP+ +IG ++++ + + Sbjct: 171 RDVTDRKDAEEKLAIALEQAKEANRAKSLFLATMSHEIRTPMNGVIGMTKLLLDTKL--- 227 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLV 675 +P YA + SG +L+I+ND+LD SKIE+GK+ L F+P ++ E+V+E L+ Sbjct: 228 -DPAQRSYAEAVRASGEALLNIINDILDYSKIEAGKVTLDEAAFDPRNVLESVAE---LL 283 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTH 731 A +K + I T + ++PR+L D ++QI LN+ NAI FT GG +++ T Sbjct: 284 APRAFDKGLEIVTEISPSVPRMLMGDEARIRQILLNLAGNAIKFTGRGGVALRLLREETS 343 Query: 732 TSNEEV----------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 + + IL V DTG+GM E F Q S R EGTGLGL + Sbjct: 344 PAGRRIDGKREGRIGLILEVEDTGIGMDEQAREHIFDDFAQADQSHARRYEGTGLGLAIT 403 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 K +V A G+ + S +G++ PL HD Sbjct: 404 KRLVGAMEGRIEVESEEGRGSVFRAHLPLRLALGEHD 440 >gi|261250888|ref|ZP_05943462.1| hypothetical protein VIA_000906 [Vibrio orientalis CIP 102891] gi|260937761|gb|EEX93749.1| hypothetical protein VIA_000906 [Vibrio orientalis CIP 102891] Length = 1053 Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 110/384 (28%), Positives = 188/384 (48%), Gaps = 15/384 (3%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTNRAVSKLFGY 487 Q + E ++ I R +++ + S I+E +AII+ + I+ N+ + +GY Sbjct: 139 QLALHQEGLEHEIELRTRDLQANEALSRTIIEGAPSSVAIIDSQQRIILWNKTAEETYGY 198 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL-----EKITLGSTKEEKLLSLR 542 +++ + L+ + P + L+ LS+D + + E T S + L Sbjct: 199 SFDEVEGQNLCDLLQIDLPEELRDVLSGELSIDDQIKVSGGFFEVETYTSQGHMIPIDLG 258 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 I I ++ + D++ K +++L+ A+ AE+ KS FLA +SHEIRTP+ A Sbjct: 259 ITIFLFDEQCRAAMFLRDVTSRKIVEDELNKARSKAEEAVEVKSMFLANMSHEIRTPMNA 318 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 IIG S + P+ +Y I S +L+L I+ND+LD SKIE+GK+++ Sbjct: 319 IIGMSHLALKTDL----TPKQHDYILKIHNSASLLLGIINDILDFSKIEAGKLSIEHIEF 374 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPS 721 LD+ + + A EK + + N+P++L D + QI +N+++NA+ FT Sbjct: 375 HLDDVLHNVSMVTGQKAFEKGLELIFQIDRNVPKVLFGDPLRLGQIIINLVNNAVKFTDQ 434 Query: 722 GGQIIISTTHTSNEEVI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 G + T +EE I V+DTG+GM+ + EK F Q S R GTGLGL Sbjct: 435 GEITVHVTKKPYSEEKIELNFTVQDTGIGMSPEQSEKLFSAFTQADGSTTRRYGGTGLGL 494 Query: 779 PLAKAMVDANMGKFYIFSTPAKGT 802 + + +V+ G ++ S KG+ Sbjct: 495 SICRRLVELMGGDIHVESAVGKGS 518 >gi|332535394|ref|ZP_08411185.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas haloplanktis ANT/505] gi|332035187|gb|EGI71697.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas haloplanktis ANT/505] Length = 892 Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 109/393 (27%), Positives = 190/393 (48%), Gaps = 25/393 (6%) Query: 438 VDTRINKRKMEIEVMQLC--SILEATSDGIAIINREGIILSTNRAVSKLFGYPVED---- 491 +++ + +R EI M + SIL + S I + G+I N A KL GY +D Sbjct: 364 LESEVKQRTQEIADMNMLQQSILNSASYSIIATDTNGLITLFNPASEKLLGYKAQDVIGI 423 Query: 492 -----------ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL-- 538 I++K + E N P + + + + + T S+ E++ Sbjct: 424 KNPGIFHLKEEIIKKAKLLSAELNKPVTPGFEVFILKATATEPDINQWTYISSTGEQIQV 483 Query: 539 -LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 LS+ ++ + Y +D++E + L H+K++AE+ S KS+FLA +SHEIR Sbjct: 484 NLSVTSLLNNEGDTVGYLGIAYDLTEQIDHEQALGHSKELAEQASQAKSEFLANMSHEIR 543 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ I+G ++++ Q PL N + EY S + I+ND+LD SKIE+GK++L Sbjct: 544 TPMNGILGTLQLLQEQ---PL-NEKSKEYLKKSLYSTRALTTIINDILDFSKIEAGKLSL 599 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717 +P E + S + + A +K I ++ + D ++Q+ LN++SNAI Sbjct: 600 EHKPFDFFELIHHLESDLGVQATDKNIYLKFVIDIEHKHWVGDPVRLRQVFLNLISNAIK 659 Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 FT GG + ++ T + + DTG+G++ +++ + F Q S GTGLG Sbjct: 660 FTSQGG-VTVTFRLTDESRICCCISDTGIGISEQAIDRLFERFEQAEQSTTREYGGTGLG 718 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 LP+ K+++ G+ + S G+ + PL Sbjct: 719 LPITKSLIGLMNGEIKVTSQLGSGSQFYVYLPL 751 >gi|117926619|ref|YP_867236.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610375|gb|ABK45830.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1390 Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 89/249 (35%), Positives = 134/249 (53%), Gaps = 8/249 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ +LS AK+ AE+ + KSDFLA +SHEIR P+ AII S + Q + R Sbjct: 705 RRAAKELSCAKQRAERANHAKSDFLATMSHEIRNPMNAIIALSHLALEQSH----DQRQR 760 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +Y + I +G +L I+ND+LD SKIE+GK+ + LD+ +S +L + A EK+I Sbjct: 761 DYLSKIHTAGQSLLRIINDILDFSKIEAGKLEIEQTDFQLDDVLSNLATLTAVKAQEKQI 820 Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LR 740 + A +P L D + QI LN++ NAI FT G + T HT E++ Sbjct: 821 ELIFDKAPALPHALRGDPLRLSQILLNVVGNAIKFTEQGEVEMSITRHTQRGELLELCFT 880 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 VRDTG+GM ++ + +P+ Q +S R G+GLGL ++ +V G + STP Sbjct: 881 VRDTGIGMNEAQIAELFRPYQQAESSTSRRFGGSGLGLSISHQLVTLMNGTIQVSSTPGV 940 Query: 801 GTLIEIIFP 809 G+ I P Sbjct: 941 GSQFVITLP 949 >gi|217970145|ref|YP_002355379.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] gi|217507472|gb|ACK54483.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] Length = 833 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 87/264 (32%), Positives = 138/264 (52%), Gaps = 8/264 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T D++E K + +L AK+ AE S K DFLA +SHEIRTP+ IIG ++++ + Sbjct: 147 TYRDVTERKLREIELLQAKEAAEAASRAKGDFLANMSHEIRTPMNGIIGMTDLLLDSTIA 206 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 G R EY + S +L I+ND+LD S+IE+G++++ SL VSE + Sbjct: 207 --GEQR--EYLQTVKSSAEALLTIINDILDFSRIEAGRLSVEQIDFSLHSVVSETCRALA 262 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHT 732 L A++K + + A ++P +L D ++QI +N++ NAI FT G ++ + Sbjct: 263 LRASQKGLELYYDVAPDVPSVLRGDPTRLRQILVNLIGNAIKFTEHGEVEVRVRCVQRNG 322 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + VRDTG G+ +LE F Q NS + GTGLGL + + + + G+ Sbjct: 323 GAASIEFLVRDTGCGIAPDKLEAIFGAFSQADNSTTRKYGGTGLGLAICRQLTELMGGRI 382 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHP 816 + S P G+ E+ PL + P Sbjct: 383 GVDSVPGAGSRFEVTLPLRAVADP 406 >gi|254467598|ref|ZP_05081007.1| periplasmic sensor hybrid histidine kinase [Rhodobacterales bacterium Y4I] gi|206684346|gb|EDZ44830.1| periplasmic sensor hybrid histidine kinase [Rhodobacterales bacterium Y4I] Length = 761 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 89/289 (30%), Positives = 150/289 (51%), Gaps = 19/289 (6%) Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDIS---------EWKQEKNKLSHAKKIAEKESSHKS 586 + + LR ++ LP+ + D S E + + L A++ A+ + KS Sbjct: 182 DAIAGLRSPLRPLPWFASREFRALDFSVGVLEETFAERDEREFALEQAREAADIANRAKS 241 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 +FLA +SHEIRTP+ +IG +E+++ R + YA I +SG+ +L I+ND+L+ Sbjct: 242 EFLANMSHEIRTPMNGVIGMAELLQETRL----DDDQRMYAETIGKSGSALLTIINDILN 297 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVK 705 SKIE+GK+ L P +L AV + ++L+ A EK + + + +P + D ++ Sbjct: 298 FSKIEAGKLELSCAPFNLQTAVEDVVTLLSPKAAEKGVEVTMRYDPALPELFEGDAGRIR 357 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFG 761 Q+ NI NA+ FT G + I T T+ + V L+V DTG+G+ + + + F Sbjct: 358 QVITNIAGNAVKFTCE-GYVFIEVTGTAQPDGGLLVRLQVTDTGIGIAQDRIGRIFRAFE 416 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 Q N+ EGTGLGL ++ +++ G + S P KG++ I PL Sbjct: 417 QADNAATRNFEGTGLGLAISSRLLELMGGSVEVQSVPGKGSVFTIQIPL 465 >gi|158337549|ref|YP_001518724.1| circadian input kinase [Acaryochloris marina MBIC11017] gi|158307790|gb|ABW29407.1| circadian input kinase [Acaryochloris marina MBIC11017] Length = 735 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 140/249 (56%), Gaps = 9/249 (3%) Query: 566 QEKNKLSHAKKIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +++ + HA +A + S+ KSDFLA +SHE+RTPLT +IG S + GPL + + Sbjct: 350 EQRTQELHAALLAAQSSNQAKSDFLATMSHELRTPLTCVIGMSATLLRWSLGPLTDKQR- 408 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 I SG +L+++ND+LD S ++SGK L+ SL V + + +++ A+ ++ Sbjct: 409 SCLQTIHDSGEHLLELINDILDFSHVQSGKATLNVSDFSLTTLVQQLLQVMRDKADAHQV 468 Query: 685 LIRTSFANNIP----RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 ++ + IP R +ADLR V+QI +++ NAI FTP GG++ + +N V+ + Sbjct: 469 QLKANL--KIPPERDRFIADLRRVQQILISLTDNAIKFTPMGGKVTLRVWVETN-TVVFQ 525 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+G+++ +L + F Q+ S EG GLGL LA+ V + G + S + Sbjct: 526 VEDTGIGISSSQLPHLFEKFQQLDGSYHRTYEGAGLGLALAQQCVTLHQGWIDVSSEEGQ 585 Query: 801 GTLIEIIFP 809 G++ + P Sbjct: 586 GSIFTVQLP 594 >gi|261418255|ref|YP_003251937.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|319767785|ref|YP_004133286.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] gi|261374712|gb|ACX77455.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|317112651|gb|ADU95143.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] Length = 582 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 103/366 (28%), Positives = 181/366 (49%), Gaps = 22/366 (6%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 R EI+ +L +++E G+ I+ G I NRA F D L +P+ L Sbjct: 234 RAREIQTDRLHTLIENVGSGLLFIDHRGHISLINRAFQTQFHLDPSDCLHRPYADVLPHG 293 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 D+ + ++ I + T + + L I I++ F + + +EW Sbjct: 294 ---------------DIVRFIDDIFITETTMRRHMRLTIGIERKHFDVYGAPIIGTNAEW 338 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K ++ E K DF+A VSHE++TP+T+I GF+E + + G + + + Sbjct: 339 KGIVVVFHDITELKRLEQIRK-DFVANVSHELKTPVTSIKGFAETLLD---GAMKDEAAL 394 Query: 625 E-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 E + I + + +V +LLD+SKIE L E V + + ++EA ++ + A EK+ Sbjct: 395 EHFLTIILKESERLQTLVEELLDLSKIEQHGFQLQLEDVDIAQVIAEAAAVFRQKAAEKQ 454 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 I + + + I D +KQI LN+L+NAI +TP G++ + T +EV++ V+D Sbjct: 455 IDLHIESPSGLV-IRGDRNRMKQILLNLLANAITYTPEHGRVAVEAEET-EKEVLIHVKD 512 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ E+ + + F ++ ++ GTGLGL + K +V+A+ G + S +GT+ Sbjct: 513 TGIGIEEKEIPRIFERFYRVDKARSRDSGGTGLGLAIVKHLVEAHHGYITVASKVGRGTV 572 Query: 804 IEIIFP 809 I FP Sbjct: 573 FTIHFP 578 >gi|237748106|ref|ZP_04578586.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes OXCC13] gi|229379468|gb|EEO29559.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes OXCC13] Length = 1068 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 90/265 (33%), Positives = 149/265 (56%), Gaps = 13/265 (4%) Query: 556 LTMHDISEWKQEKNK----LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 LT+ DI E + ++ + L+ A +AEK ++ KSDFL+++SH++RTP+ IIG + + + Sbjct: 532 LTVRDIHEMRLKEERVRQTLTDALMVAEKANNAKSDFLSKMSHDMRTPMNGIIGLAMIAE 591 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 R P R EY + I + + +L ++ND+LD+SKI+SGK+ L E +L + + Sbjct: 592 KYRHDP---DRMKEYFSKITVASHHLLGLINDVLDMSKIDSGKIVLVSERFNLVSLLKDV 648 Query: 672 ISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIIS-- 728 + +V ++ +R S A+++ R+ D ++Q+ +NILSNA+ FTP+GG I I Sbjct: 649 VDIVMPDLKSRQHAVRMSVASDVHERVEGDQLRLQQVFMNILSNAVKFTPAGGHIGIDVS 708 Query: 729 ---TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 +T L D G+GM+ L+K PF + NS + GTGLG+P++KA+V Sbjct: 709 ESPSTFAGYGCYRLVFSDDGIGMSKEYLKKIFVPFEREDNSMTSKISGTGLGMPISKAIV 768 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810 + G F + S G+ I L Sbjct: 769 EMMNGSFDVESERGVGSTFTITVHL 793 >gi|262195449|ref|YP_003266658.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262078796|gb|ACY14765.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 928 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 138/255 (54%), Gaps = 6/255 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DI++ Q +++L A++ A+ S KS FLA +SHEIRTPL ++G ++++ + Sbjct: 271 CLSDIADRMQIEDELVQAREDAQAASRVKSQFLANMSHEIRTPLNGVLGMADLLLDTGL- 329 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 +P E + + S N + ++ D+LDISKIE+GK+ + L E V EA + Sbjct: 330 ---SPEQRELLDALQSSANALRGLIEDVLDISKIEAGKLEIEAVSFPLLELVYEAARAIA 386 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A E+ + + +P R+L D +QI LN+LSNA+ FTP+G ++++ ++E Sbjct: 387 VRAQEQGLELIVDAEPALPARVLGDPVRFRQIVLNLLSNAVKFTPAG-EVVVRVRQRADE 445 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + L VRDTGVG+ E + F Q S R GTGLGL + + + + GK + Sbjct: 446 HIELSVRDTGVGVPEERREAIFESFTQSDGSTTRRFGGTGLGLTICRELAERMGGKLWYE 505 Query: 796 STPAKGTLIEIIFPL 810 G++ + PL Sbjct: 506 PGDQGGSVFSVSLPL 520 >gi|261251052|ref|ZP_05943626.1| hypothetical protein VIA_001071 [Vibrio orientalis CIP 102891] gi|260937925|gb|EEX93913.1| hypothetical protein VIA_001071 [Vibrio orientalis CIP 102891] Length = 1319 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 107/374 (28%), Positives = 188/374 (50%), Gaps = 23/374 (6%) Query: 444 KRKMEIEVMQLCS----ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFT 498 +RK E +V++ IL AT + + ++ +G L+ N +L G P+++I+ K P Sbjct: 459 QRKAEQKVLEQSQLNQEILNATPNPMYCLSSQGNYLTINAKFCELCGLPMQEIIGKTPQD 518 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT- 557 VF +Q+ + + L L+Q + L S ++ L + +++ + FS+ + Sbjct: 519 VFSQQDASQCFSEAHQQ---LTLKQGSKNYEL-SVLDQHLQTRDMLVCEASFSNSHGKVS 574 Query: 558 -----MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 + D++E K + +L AK+ A+ S K +FLA +SHEIRTP+ I+G + N Sbjct: 575 GIVGILLDLTERKLMETELRDAKETADAMSRAKGEFLANMSHEIRTPMNGILGMVHLALN 634 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 P + +Y I+ S +L I+ND+LD SKIE GK+N+ SLDE Sbjct: 635 TELDPAQH----KYLTRINESAKNLLGIINDILDFSKIEVGKLNIETIDFSLDEVFDNLT 690 Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTT 730 +++ L A EK+I +P ++ D + Q+ +N+ NA+ FT G ++ + Sbjct: 691 NVISLKAQEKKIEFLLDIEPQVPTGLIGDPLRIGQVLVNLCGNAVKFTEQGEVVVAVRIE 750 Query: 731 HTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + +V+L V+DTG+G+ ++ F Q +S GTGLGL ++K +V+ Sbjct: 751 MLTERDVVLHFSVKDTGIGIDKEKIAHLFDAFSQADSSITREFGGTGLGLSISKQLVELM 810 Query: 789 MGKFYIFSTPAKGT 802 G+ + ST G+ Sbjct: 811 GGQLSVSSTLGAGS 824 >gi|99078255|ref|YP_611513.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040] gi|99035393|gb|ABF62251.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040] Length = 741 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 128/498 (25%), Positives = 216/498 (43%), Gaps = 50/498 (10%) Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392 F ++ HG LF+A + L + + IA GL L L +P M T Sbjct: 144 FVIFDHGPLFFAVAATLYVF-------LMIALGL---LGFAFLKAKKIFRPFMGALIIIT 193 Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 A L I W +T F+ P + I + +N M+ Sbjct: 194 AAPVVANLAYIGWG------VTVFGFDPT---PFTFAVSLIALSWL--LVNNSMMDTAAQ 242 Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 + AT D + +++ G +S N A +L G + D + +EQ Sbjct: 243 GRTLMFYATQDPVILVDAGGQFVSANPAARQLIGDRIPD-----YGEPIEQ--------- 288 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---------CYSLTMHDISE 563 L E+ L ++ ++ LG +L + +P S + +++ DI+E Sbjct: 289 LPEVGPL-VKDLVKAGGLGKPGPIRLAGRAFDPRAVPIDSPIQAQIPLLGWCISLVDITE 347 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 ++ L A +AE + K+ FLA VSHEIRTPL ++G + V+ + + Sbjct: 348 RERAAEALREALSLAEAANRAKTQFLANVSHEIRTPLNGVLGMASVLGETKL----DEEQ 403 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 E+ I+ SG ++L + D+LD+SK+E+GKM L +P +L A+ A +L A EK Sbjct: 404 QEFLQVIEDSGQVLLTTIGDVLDLSKVEAGKMTLETKPFTLRNALEGARALFSARAKEKG 463 Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 I + +++PR IL D +Q+ N++SNAI FT +G I + + +++RV Sbjct: 464 IGLHLEMHDDLPRVILGDDHRFRQVVHNLVSNAIKFTETGAVTISAAPAENGSILLVRVS 523 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG G+ + +PF Q+ + GTGLGL +++ + G + +G Sbjct: 524 DTGPGIPAEARDMIFQPFQQVEGGDARKFGGTGLGLSISRQLCHLMGGSLQVADDEPQGA 583 Query: 803 LIEIIFPLYDTSHPHDCI 820 EI PL + + + Sbjct: 584 TFEIRLPLLPANEAQELL 601 >gi|39995824|ref|NP_951775.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39982588|gb|AAR34048.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|298504836|gb|ADI83559.1| sensor histidine kinase response receiver, PAS domain-containing [Geobacter sulfurreducens KN400] Length = 589 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 104/373 (27%), Positives = 185/373 (49%), Gaps = 42/373 (11%) Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 G A I+ G+I NR ++ + G +++ F+ F+ ++ +T +S R Sbjct: 63 GYATIDAVGVIADANRTLAGMIGADCREMVGLLFSDFVHKDD-------VTSFVSHLARC 115 Query: 524 TLEKITLGSTKEEKL-----LSLRIIIKKLPFS------SCYSLTMHDIS-------EWK 565 T ++ G T E +L +S+ + + +P + SC + + DI+ E Sbjct: 116 TGQR--EGVTGEFRLSGRNGISVDVQLSSMPLTPPGGRVSCRT-AITDITMIKRKERELN 172 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY-I 624 + + +L AK+ AE S KS+FLA +SHEIRTP+ ++G +++ + G R+ + Sbjct: 173 ESREELCWAKEAAEDASRAKSEFLANMSHEIRTPINGVLGMLQLVLDTELGD--EQRHCL 230 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E A RS + +L +VND+LD S+IE+ KM P L V+ A+ ++ A K + Sbjct: 231 EMAK---RSADALLRLVNDILDFSRIEARKMVFESRPFDLTACVNSAVEILAFEARRKGL 287 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--- 740 + ++P ++ D ++Q+ +N++ NA+ FT G ++ ++ + LR Sbjct: 288 AVMVRMGPDVPAAVVGDEARLRQVLVNLIGNAVKFTDRG-KVEVTAARAERQSDPLRTAI 346 Query: 741 ---VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 VRDTG+G+ E E+ + F Q+ + R GTGLGL L + +V+A G + S Sbjct: 347 RISVRDTGIGIAPQERERLFRVFSQVDGACNRRFGGTGLGLALTRDIVEAMGGAIDVESQ 406 Query: 798 PAKGTLIEIIFPL 810 +G+ I PL Sbjct: 407 SGQGSTFTITIPL 419 >gi|237746428|ref|ZP_04576908.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes HOxBLS] gi|229377779|gb|EEO27870.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes HOxBLS] Length = 1070 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 87/261 (33%), Positives = 145/261 (55%), Gaps = 12/261 (4%) Query: 558 MHDISEWKQEKNK--LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +HD+ E K+E+ + L+ A K+AEK ++ KSDFL+++SH++RTP+ IIG + + R Sbjct: 536 IHDVRE-KEERVRQTLTDALKVAEKANNAKSDFLSKMSHDMRTPMNGIIGLAMIAGQHRH 594 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P R EY I + +L ++ND+LD+SKIE+G++ L E + + + + +V Sbjct: 595 EP---ERMKEYLTKISVASRHLLGLINDVLDMSKIEAGRIVLVEEDFDVVALLRDVVDIV 651 Query: 676 QLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A +R IR + P + D ++Q+ +N+LSNA+ FTP GG I +S + T++ Sbjct: 652 APDARGRRHAIRFEVDETVFPFVKGDSLRLQQVFMNLLSNALKFTPEGGHIGVSVSETAS 711 Query: 735 -----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 D G+GM+ ++K PF + NS R GTGLG+P++KA+V+ Sbjct: 712 PFDGYGAYRFVFSDDGIGMSPAFMDKLFSPFEREENSMTSRVSGTGLGMPISKAIVEMMN 771 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G + S +GT+ + L Sbjct: 772 GTIDVESERGRGTVFTVTVHL 792 >gi|134299991|ref|YP_001113487.1| multi-sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1] gi|134052691|gb|ABO50662.1| PAS/PAC sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1] Length = 1271 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 104/377 (27%), Positives = 189/377 (50%), Gaps = 20/377 (5%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 + + E E +L +I+ + IA+++ EGII N + G ED++ K Sbjct: 401 REETEREAAKLRAIISIMNAAIALVDAEGIITEINEQCLTITGKVREDLIGKKLESL--- 457 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS---LTMHD 560 + ++ I + L + +T+ T+ + + + I+ + Y L + D Sbjct: 458 HNGKILEKIQKMIANFRLNRNSSPVTI--TRRVGGMDVIMNIQPVYRDKTYDGVLLMVVD 515 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ++E + K + A +AEK S KS+FLA +SHEIRTP+ I+GF+EV+ Q + Sbjct: 516 VTEVAKAKRQAEQALLVAEKASKAKSEFLANMSHEIRTPMNGILGFAEVLIQQEL----S 571 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P+ E I + G ++D++ND+LD+SKIESGK+ + SL + + EA+++++ Sbjct: 572 PQQQESVKIIQQCGEQLMDLINDILDLSKIESGKLVMEETSFSLRKLIHEAVNVIESKFL 631 Query: 681 EKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NE 735 E+ + ++ N+ ++ D ++Q+ N++SNA FT G + IS S + Sbjct: 632 EQNVEMKIDIEQNLHDQLKGDPTRIRQVLYNLISNAAKFTHQ-GYVKISVAEESISGADH 690 Query: 736 EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ LR + DTG+G+ +L+ F Q S + GTGLGL + K++ G+ Sbjct: 691 QIKLRFCIEDTGIGIPKEKLKLIFDAFTQADGSTTRKYGGTGLGLTICKSLTQLMGGEIN 750 Query: 794 IFSTPAKGTLIEIIFPL 810 + S KG++ P+ Sbjct: 751 VESQVNKGSIFSFYIPV 767 >gi|87311452|ref|ZP_01093572.1| sensor histidine kinase/response regulator [Blastopirellula marina DSM 3645] gi|87285864|gb|EAQ77778.1| sensor histidine kinase/response regulator [Blastopirellula marina DSM 3645] Length = 1006 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 81/243 (33%), Positives = 140/243 (57%), Gaps = 3/243 (1%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 K L H E+ S +KSDFLA +SHE+RTPL + + ++++ + G L + +++A Sbjct: 310 KLSLQHQAADLERASRYKSDFLANMSHELRTPLNSSLILAKLLADNPQGNLSEEQ-VKFA 368 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I +GN +L++++D+LD+SKIE+G+M L E + + + + E +Q A +K + Sbjct: 369 KTIQSAGNDLLNLISDILDLSKIEAGQMELRLEQLRVQKLIDEVSRTMQPLARQKELRFE 428 Query: 688 TSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T A + P+I+ D + ++Q+ N+LSNAI FT G++ +S T SN+ + L V DTG+ Sbjct: 429 TQIAPDCPKIIFTDRQRLEQVLKNLLSNAIKFTEQ-GEVKLSVTPLSNQRLALAVSDTGI 487 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G++ + + + F Q +S + GTGLGL ++K G+ + S P G+ + Sbjct: 488 GISEEQQQIVFEAFRQADSSSHRKHGGTGLGLSISKEFSRLLGGELRLESKPGDGSTFTL 547 Query: 807 IFP 809 I P Sbjct: 548 IIP 550 >gi|330969226|gb|EGH69292.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 576 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 103/381 (27%), Positives = 176/381 (46%), Gaps = 30/381 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S++E+ D + + + +GII N+ + L G ++++ P F P+ + + Sbjct: 187 SLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAPCKNFF--TDPASADAAIKR 244 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIII---KKLPFSSCYSLTMHDISEWKQEKNKLS 572 +LS E E ++S + ++ D++E K+ + L Sbjct: 245 VLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFA-AARDVTERKRFERTLE 303 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 E S KS+FLA +SHE+RTPL A+IGFSE +++ G + + + Y I Sbjct: 304 EKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDMTDAQR-RYIGDIFN 362 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG +L ++ND+LD+SK+E+G M L E V LDE +S ++ +V+ A + I ++ Sbjct: 363 SGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAALQHIQLKLETEA 422 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST--THTSNEEVI------------ 738 + D R KQI N+L+NA+ F+ GG + ++ S +I Sbjct: 423 EFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAGLIDGDWPTYGFALP 482 Query: 739 ---------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 L V DTG+G+ ++ K K F QI + + EGTGLGL + K + + + Sbjct: 483 SGDCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTGLGLAMVKQLTELHG 542 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G + S G + P+ Sbjct: 543 GCVAVASVKDLGARFVVWLPI 563 >gi|310658354|ref|YP_003936075.1| histidine kinase [Clostridium sticklandii DSM 519] gi|308825132|emb|CBH21170.1| putative Histidine kinase [Clostridium sticklandii] Length = 965 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 137/243 (56%), Gaps = 10/243 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q + L AKK A++ + KS F+AR+SHEIRTPL AI G + ++K + Sbjct: 304 EQIQKDLKKAKKEADEANEFKSGFMARMSHEIRTPLNAITGMAYLLKKTDISLTQSM--- 360 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 Y + I ++ N +L I+ND+LD SKIE+GK+ + S+D+ + +++V E+ I Sbjct: 361 -YVDRITQASNNMLSIINDILDFSKIEAGKVEIEEASFSIDDIIQNVVNIVSYKIEEQEI 419 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI----L 739 R S + +P + D + ++Q+ LNIL+NA FT G ++ + + E I Sbjct: 420 GFRLSKDSQLPNWFIGDPKRIEQVLLNILNNAAKFTQKG-EVALDIRLIAKESDIYHISF 478 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 ++DTG+GMT ++EK PF Q +S R G+GLGL + K +V+ G +FSTP Sbjct: 479 NIKDTGIGMTQQQVEKLFSPFVQGDSSINRRFGGSGLGLSIVKNLVEMMGGSINVFSTPD 538 Query: 800 KGT 802 +G+ Sbjct: 539 EGS 541 >gi|261409327|ref|YP_003245568.1| histidine kinase [Paenibacillus sp. Y412MC10] gi|261285790|gb|ACX67761.1| histidine kinase [Paenibacillus sp. Y412MC10] Length = 559 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 83/261 (31%), Positives = 142/261 (54%), Gaps = 10/261 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ +L AK+ AE + K++FLA +SHEIRTP+ +IG +++ + Sbjct: 147 ELEKINQELVLAKEEAEIAAKAKTEFLAMMSHEIRTPMNGVIGMIDLLMDSEL----QDE 202 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 EYA I S + +++I+ND+LD SK+ESGKM L P L V E L A++K Sbjct: 203 QREYATIIRNSADALVNIINDILDFSKMESGKMELEEYPFDLKSCVQEVFGLFSGEASKK 262 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI--- 738 + + + IP + D+ ++Q+ +N++SNA+ FT GG ++ + + E + Sbjct: 263 NLELTYYIEDQIPSMVFGDMGRLRQVLVNLVSNAVKFTNEGGVYLVVSLAKAEENRLTLE 322 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V+DTG+G+++ +L++ KPF Q+ +S R GTGLGL + K++V G+ + S Sbjct: 323 FTVKDTGIGISSKKLDRLFKPFSQLDSSMTRRYGGTGLGLAICKSLVQMMGGEIEVDSKE 382 Query: 799 AKGT--LIEIIFPLYDTSHPH 817 +G + I ++ HP Sbjct: 383 GEGATFVFTICVHTHEEEHPR 403 >gi|218245995|ref|YP_002371366.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] gi|218166473|gb|ACK65210.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] Length = 1193 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 89/287 (31%), Positives = 148/287 (51%), Gaps = 29/287 (10%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI++ K+ + L AK+ AE + KS+FLA +SHEIRTP+ AI+GF E+++ G Sbjct: 670 TITDITQKKEAQEALRKAKESAEIANRAKSEFLANMSHEIRTPMNAILGFCELLQ----G 725 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + +PR Y N I SG ++L ++ND+LD+SKI+SGK+ +++EP+ L + E + Sbjct: 726 IIDDPRSRSYLNSIASSGKILLALINDILDLSKIDSGKLQINYEPIHLRALIEEIYQIFV 785 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTT---- 730 A +K++ + A++IP I+ D ++QI N+L NA+ FT G +I + T Sbjct: 786 EDAQKKKVTLSLFIADDIPSTIIFDEVRLRQILFNVLGNALKFTHEGAVKIAVKATKKLP 845 Query: 731 -------HTSNEEVI------------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 H + ++ + V DTG+G+ + + F Q + Sbjct: 846 ENREKIDHVYHNRLVNQQSKADCYCLTISVEDTGIGIAPEQQDYIFDAFTQSEGQSTRKY 905 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 GTGLGL + + + G ++ S KG+ FP + HD Sbjct: 906 GGTGLGLTITRRLTQMLGGTIHLQSQLGKGSTFTFYFPNVSFAETHD 952 >gi|229590584|ref|YP_002872703.1| putative two-component system sensory histidine kinase [Pseudomonas fluorescens SBW25] gi|229362450|emb|CAY49356.1| putative two-component system, sensory histidine kinase [Pseudomonas fluorescens SBW25] Length = 464 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 90/270 (33%), Positives = 138/270 (51%), Gaps = 32/270 (11%) Query: 566 QEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +EKN +L HA S KS+FLA +SHE+RTPL A+IGFSE +K+ G + + + Sbjct: 193 EEKNLELEHA-------SHMKSEFLATMSHELRTPLNAVIGFSEALKDGLVGEMSDTQR- 244 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EY I SG +L ++ND+LD+SK+E+G M L E V L ++ ++ +V+ A RI Sbjct: 245 EYIGDIFTSGQHLLSLINDILDLSKVEAGMMELELEAVELAGLLANSLLIVREKAALHRI 304 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI------ 738 ++ ++ + DLR KQI N+L+NA+ F+ G + ++ E+V Sbjct: 305 QLKLESPEDLGCLALDLRKTKQIVYNLLANAVKFSEHGSSVTLTVRQVPREQVGQIPGEW 364 Query: 739 -----------------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 L V DTG+G+ ++ K K F QI +S + EGTGLGL + Sbjct: 365 PVYNFALPDSPHQQFLELSVSDTGIGIAEDDMGKLFKAFSQIDSSLARKFEGTGLGLAMV 424 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 K + D + G + S G PL+ Sbjct: 425 KQLTDLHGGSVAVASREGCGARFVAWLPLH 454 >gi|320354604|ref|YP_004195943.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320123106|gb|ADW18652.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 1626 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 90/257 (35%), Positives = 141/257 (54%), Gaps = 9/257 (3%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DI++ ++ L AK+ AE + KS+FLA +SHEIRTP+ AI+GF+ +IK P Sbjct: 865 LEDITDEREASAALHAAKERAEAATRAKSEFLANMSHEIRTPMNAILGFAHLIKRD---P 921 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 L P + + + + +L+I+ND+LDISKIE+ KM L E L + +LV Sbjct: 922 L-TPSQLAQLEKLSAATHHLLNIINDILDISKIEANKMELGVEDFDLARIIDRIAALVAD 980 Query: 678 YANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE 735 K + + +++P +L D + QI LN++SNAI FT G I + + Sbjct: 981 SVLAKHLELFVDL-DHVPSMLRGDGSRLGQILLNVVSNAIKFTEQGAVDITVRVVDARED 1039 Query: 736 EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +LR +RDTG+GM+ ++E+A PF Q +S R GTGLGL +++ +V+ G+ Sbjct: 1040 RPVLRFEIRDTGIGMSAEQVERAFLPFEQADSSMTRRFGGTGLGLTISRQLVELMGGRMG 1099 Query: 794 IFSTPAKGTLIEIIFPL 810 + S GTL + P Sbjct: 1100 VESELGHGTLCWLEIPF 1116 >gi|239906948|ref|YP_002953689.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239796814|dbj|BAH75803.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1419 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 88/256 (34%), Positives = 144/256 (56%), Gaps = 11/256 (4%) Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 C + + DI+E K +++L A++ AE+ S KSDFLA +SHEIRTP+ AI+G ++++ + Sbjct: 1011 CLLMLIVDITERKALESELLAARERAEQGSRAKSDFLANMSHEIRTPMNAIMGMADLLAD 1070 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 PL PR Y + SG +++ ++ND+LD+SK+E+GK+ L EP L EA+ + Sbjct: 1071 T---PL-TPRQKRYVDIFQHSGQILMRVINDILDLSKLEAGKLTLEPEPFDLPEALFQTC 1126 Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTT 730 ++ A EK + + +P R+ D + QI N+L+NA FT G ++ S T Sbjct: 1127 AVFTPQAEEKGLPLFCDLDPGLPRRVYGDPIRLTQIVANLLANACKFTHEGEIRLSASAT 1186 Query: 731 HTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 +LR+ RDTGVG+ ++ + F Q+ +Q+ GTGLGL ++K + + Sbjct: 1187 LLGPSAFLLRLTCRDTGVGIAPDDIARVCDNFFQVGGNQR---RGTGLGLAISKRLTELM 1243 Query: 789 MGKFYIFSTPAKGTLI 804 G+ I S +G I Sbjct: 1244 QGELSIQSILGQGATI 1259 >gi|66044351|ref|YP_234192.1| PAS [Pseudomonas syringae pv. syringae B728a] gi|63255058|gb|AAY36154.1| PAS [Pseudomonas syringae pv. syringae B728a] Length = 576 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 103/381 (27%), Positives = 176/381 (46%), Gaps = 30/381 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S++E+ D + + + +GII N+ + L G ++++ P F P+ + + Sbjct: 187 SLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAPCKNFF--TDPASADAAIKR 244 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIII---KKLPFSSCYSLTMHDISEWKQEKNKLS 572 +LS E E ++S + ++ D++E K+ + L Sbjct: 245 VLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFA-AARDVTERKRFERTLE 303 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 E S KS+FLA +SHE+RTPL A+IGFSE +++ G + + + Y I Sbjct: 304 EKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDMTDAQR-RYIGDIFN 362 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG +L ++ND+LD+SK+E+G M L E V LDE +S ++ +V+ A + I ++ Sbjct: 363 SGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAALQHIQLKLETEA 422 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST--THTSNEEVI------------ 738 + D R KQI N+L+NA+ F+ GG + ++ S +I Sbjct: 423 EFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAGLIDGDWPTYGFALA 482 Query: 739 ---------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 L V DTG+G+ ++ K K F QI + + EGTGLGL + K + + + Sbjct: 483 SGDCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTGLGLAMVKQLTELHG 542 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G + S G + P+ Sbjct: 543 GCVAVASVKDLGARFVVWLPI 563 >gi|83646964|ref|YP_435399.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83635007|gb|ABC30974.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 792 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 86/259 (33%), Positives = 146/259 (56%), Gaps = 16/259 (6%) Query: 563 EWKQEKNKLSHAKKIA-----EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 EW+ ++ K+ IA E+ + KS FLA +SHE+RTPL AIIG+SE+++ Sbjct: 252 EWEIQERKVVEKDLIATRNRAEEANKAKSRFLANMSHELRTPLNAIIGYSEMLQE----V 307 Query: 618 LGNPRY-----IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + Y ++ + +G +L ++ND+LDISKIE+GKM + E S+++ V E Sbjct: 308 VAEDDYEREEILDDIGKVRSAGKHLLSLINDILDISKIEAGKMQISIEAFSMEDLVDEVA 367 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTH 731 ++L A+E+R + A ++ + +DL V+QI N+LSNA+ FT G ++I Sbjct: 368 GALRLLADERRNKLVVRGAGDVGVVHSDLVKVRQILFNLLSNAVKFTEDGVVELICERES 427 Query: 732 TSNEEVIL-RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + E+ +L +VRDTG+G+++ +++ +PF Q S R GTGLGL ++++ G Sbjct: 428 VAGEDWMLCKVRDTGIGISDRAIKELFRPFSQADPSTTRRYGGTGLGLAISRSYATMLGG 487 Query: 791 KFYIFSTPAKGTLIEIIFP 809 + + S +G+ I P Sbjct: 488 EITVSSKEGEGSEFCIRLP 506 >gi|56421266|ref|YP_148584.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] gi|56381108|dbj|BAD77016.1| two-component sensor histidine kinase (phosphate regulation) [Geobacillus kaustophilus HTA426] Length = 582 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 103/366 (28%), Positives = 181/366 (49%), Gaps = 22/366 (6%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 R EI+ +L +++E G+ I+ G I NRA F D L +P+ L Sbjct: 234 RAREIQTDRLHTLIENVGSGLLFIDHRGHISLINRAFQTQFHLDPSDCLHRPYADVLPHG 293 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 D+ + ++ I + T + + L I I++ F + + +EW Sbjct: 294 ---------------DIVRFIDDIFITETTMRRHMRLTIGIERKHFDVYGAPIIGTNAEW 338 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K ++ E K DF+A VSHE++TP+T+I GF+E + + G + + + Sbjct: 339 KGIVVVFHDITELKRLEQIRK-DFVANVSHELKTPVTSIKGFAETLLD---GAMKDEAAL 394 Query: 625 E-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 E + I + + +V +LLD+SKIE L E V + + ++EA ++ + A EK+ Sbjct: 395 EHFLTIILKESERLQTLVEELLDLSKIEQHGFQLQLEDVDIAQVIAEAAAVFRQKAAEKQ 454 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 I + + + I D +KQI LN+L+NAI +TP G++ + T +EV++ V+D Sbjct: 455 IDLHIESPSGLV-IRGDRNRMKQILLNLLANAITYTPEHGRVAVEAEET-EKEVLIHVKD 512 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ E+ + + F ++ ++ GTGLGL + K +V+A+ G + S +GT+ Sbjct: 513 TGIGIEEKEIPRIFERFYRVDKARSRDSGGTGLGLSIVKHLVEAHHGYITVASKVGRGTV 572 Query: 804 IEIIFP 809 I FP Sbjct: 573 FTIHFP 578 >gi|223939410|ref|ZP_03631288.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] gi|223891902|gb|EEF58385.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] Length = 1436 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 87/247 (35%), Positives = 135/247 (54%), Gaps = 8/247 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS+ K+ +L AK AE+ + KS FLA +SHEIRTP+ AIIG S + + Sbjct: 679 DISDQKRVAEELRLAKAKAEEATQMKSMFLANMSHEIRTPMNAIIGLSHLALKTQL---- 734 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P+ +Y + +G +L ++ND+LD SKIE+GK++L LDE ++ +L A Sbjct: 735 TPKQRDYIGKVHNAGTSLLAVINDILDFSKIEAGKLDLEVVDFKLDEVITSVTTLTAQKA 794 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV 737 +EK + IP +L D + QI N ++NA+ FT G ++ I + E++ Sbjct: 795 HEKGLEFLAHVTPGIPEFLLGDPLRLGQILTNFVNNAVKFTERGEIRLNIELIERTGEKL 854 Query: 738 ILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 L+ VRDTG+GMT + K +PF Q S + GTGLGL + + +V+ G+ ++ Sbjct: 855 QLKFSVRDTGIGMTTEQAAKLFQPFTQADMSTTRKHGGTGLGLTICRRLVELMGGRIWLE 914 Query: 796 STPAKGT 802 S P G+ Sbjct: 915 SEPGAGS 921 >gi|312222273|emb|CBY02213.1| similar to two-component sensor protein histidine protein kinase [Leptosphaeria maculans] Length = 2472 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 87/235 (37%), Positives = 134/235 (57%), Gaps = 11/235 (4%) Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 K+ E+ + KS FLA VSHE+RTPL +IG SE++K PL N YA+ I + Sbjct: 1966 KLKEEAAKAKSLFLANVSHELRTPLNGVIGMSELLKA---SPL-NGEQAGYADSIRVCAD 2021 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL--IRTSFANN 693 +L I+NDLLD SK+E+GKMN+ P+SL+E ++E + + Y N +R L I + + Sbjct: 2022 TLLSIINDLLDYSKLEAGKMNVMEMPLSLNETITEVVRALA-YTNAERGLKTIEELYLDP 2080 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTN 750 ++ D + Q+ +N+LSN+ FTP G + + + ++ V DTG+G+ Sbjct: 2081 EMLVMGDPVRLHQVMMNLLSNSYKFTPRGSVTVRAVVDQEADDWVDITCSVIDTGIGIPE 2140 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM-GKFYIFSTPAKGTLI 804 + +K PF QI +S GTGLGL + KA+++ M GK ++ S P KGT + Sbjct: 2141 EQKKKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHGKVWLDSVPGKGTTV 2195 >gi|257059046|ref|YP_003136934.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] gi|256589212|gb|ACV00099.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] Length = 1193 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 89/287 (31%), Positives = 148/287 (51%), Gaps = 29/287 (10%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI++ K+ + L AK+ AE + KS+FLA +SHEIRTP+ AI+GF E+++ G Sbjct: 670 TITDITQKKEAQEALRKAKESAEIANRAKSEFLANMSHEIRTPMNAILGFCELLQ----G 725 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + +PR Y N I SG ++L ++ND+LD+SKI+SGK+ +++EP+ L + E + Sbjct: 726 IIDDPRSRSYLNSIASSGKILLALINDILDLSKIDSGKLQINYEPIHLRALIEEIYQIFV 785 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTT---- 730 A +K++ + A++IP I+ D ++QI N+L NA+ FT G +I + T Sbjct: 786 EDAQKKKVTLSLFIADDIPSTIIFDEVRLRQILFNVLGNALKFTHEGAVKIAVKATKKLP 845 Query: 731 -------HTSNEEVI------------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 H + ++ + V DTG+G+ + + F Q + Sbjct: 846 ENREKIDHVYHNRLVNQQSKADCYCLTISVEDTGIGIAPEQQDYIFDAFTQSEGQSTRKY 905 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 GTGLGL + + + G ++ S KG+ FP + HD Sbjct: 906 GGTGLGLTITRRLTQMLGGTIHLQSQLGKGSTFTFYFPNVSFAETHD 952 >gi|88857165|ref|ZP_01131808.1| hypothetical protein PTD2_01356 [Pseudoalteromonas tunicata D2] gi|88820362|gb|EAR30174.1| hypothetical protein PTD2_01356 [Pseudoalteromonas tunicata D2] Length = 781 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 111/367 (30%), Positives = 177/367 (48%), Gaps = 20/367 (5%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +IL +D I I + +G IL + +++FGY ++++ T + + + Y+ Sbjct: 283 AILACLTDAIIICDAKGNILFFSEQATEMFGYSAKEMIGVNVTKLMINDHAKHHHDYIKG 342 Query: 516 ILSLDLRQTLEK----ITLGSTKEEKLLSLRII----IKKLPFSSCYSLTMHDISEWKQE 567 + + + K I + + +E +SL I I KL F S DIS KQ Sbjct: 343 YQASGTSKVIGKNRDLIAVKKSGDEFPISLVIKELANISKLTFVGIIS----DISHIKQR 398 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + +L AK AE + KS FLA SHEIRTP+ I G ++++ + G ++ A Sbjct: 399 EKELQDAKNSAESAALAKSAFLANTSHEIRTPMNGIYGILQLLECEPLTQNGQ-NLLKQA 457 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 Y S ++ IVND+LD SKIE+GK+NL + ++ S + L +K I ++ Sbjct: 458 TY---STQALMTIVNDILDFSKIEAGKLNLEHTHFKVSALLAHLESDMSLQTKDKNITLK 514 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRD 743 D ++QI +NI+SNAI FT GG +I + +N +V + D Sbjct: 515 IHNTITHDDWYGDALRIRQILINIISNAIKFTQQGGIVISCYCNQANNASINQVTFEITD 574 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+GM+ L+K + F Q NS R GTGLG+ + ++ GK + S GT Sbjct: 575 TGIGMSKMALDKLFERFEQADNSTTRRFGGTGLGMSIVHSLTTLMEGKINVQSEEGVGTK 634 Query: 804 IEIIFPL 810 +I+ PL Sbjct: 635 FQIMLPL 641 >gi|329928573|ref|ZP_08282440.1| signal transduction histidine-protein kinase BarA [Paenibacillus sp. HGF5] gi|328937689|gb|EGG34098.1| signal transduction histidine-protein kinase BarA [Paenibacillus sp. HGF5] Length = 559 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 83/261 (31%), Positives = 142/261 (54%), Gaps = 10/261 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ +L AK+ AE + K++FLA +SHEIRTP+ +IG +++ + Sbjct: 147 ELEKINQELVLAKEEAEIAAKAKTEFLAMMSHEIRTPMNGVIGMIDLLMDSEL----QDE 202 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 EYA I S + +++I+ND+LD SK+ESGKM L P L V E L A++K Sbjct: 203 QREYATIIRNSADALVNIINDILDFSKMESGKMELEEYPFDLKSCVQEVFGLFSGEASKK 262 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI--- 738 + + + IP + D+ ++Q+ +N++SNA+ FT GG ++ + + E + Sbjct: 263 NLELTYFIEDQIPSMVFGDMGRLRQVLVNLVSNAVKFTNEGGVYLVVSLAKAEENRLTLE 322 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V+DTG+G+++ +L++ KPF Q+ +S R GTGLGL + K++V G+ + S Sbjct: 323 FTVKDTGIGISSKKLDRLFKPFSQLDSSMTRRYGGTGLGLAICKSLVQMMGGEIEVDSKE 382 Query: 799 AKGT--LIEIIFPLYDTSHPH 817 +G + I ++ HP Sbjct: 383 GEGATFVFTICVHTHEEEHPR 403 >gi|156743247|ref|YP_001433376.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156234575|gb|ABU59358.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 1003 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/269 (31%), Positives = 143/269 (53%), Gaps = 12/269 (4%) Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 +S + + H+I+E KQ + L +A+ AE+ S KS FLA +SHE+RTPLT IIG++++I Sbjct: 451 ASVWQVVAHNITERKQTEEALRNARDWAEEASRAKSRFLANMSHELRTPLTTIIGYADLI 510 Query: 611 K-NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + G R + + +G +L I+NDLLD+SKIE+G+M +H P S+ Sbjct: 511 TLATQQGEFNRIR--DDITRVRNAGKHLLAIINDLLDLSKIEAGRMEIHIAPFSVPALAE 568 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII-- 727 E ++ + L A +R + + + + +D V+Q+ N++ NA FT G + Sbjct: 569 EVVASMDLLAQTRRNTLILTIDPTVGVMHSDDVRVRQVLYNLVHNACKFTEDGVVTVTIA 628 Query: 728 -----STTHTS--NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 ST H + + ++ + DTG+GMT+ ++ + + F Q + + GTGLGL L Sbjct: 629 RSALESTVHVNGHSARIVFTISDTGIGMTDDQMARLFQEFTQADPTTMRKYGGTGLGLAL 688 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ +V G + S P GT + P Sbjct: 689 SRHLVRMLGGDITVTSKPGVGTTFVVTLP 717 >gi|258541259|ref|YP_003186692.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-01] gi|256632337|dbj|BAH98312.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-01] gi|256635394|dbj|BAI01363.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-03] gi|256638449|dbj|BAI04411.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-07] gi|256641503|dbj|BAI07458.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-22] gi|256644558|dbj|BAI10506.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-26] gi|256647613|dbj|BAI13554.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-32] gi|256650666|dbj|BAI16600.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653657|dbj|BAI19584.1| two component hybrid sensor histidine kinase and regulator [Acetobacter pasteurianus IFO 3283-12] Length = 1160 Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/260 (32%), Positives = 145/260 (55%), Gaps = 8/260 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L M +I K+ +L AK+ AE + KS F+ VSHEIRTPL +I+G++ +++N+ Sbjct: 690 LLMKEIRAHKRTDQELKKAKERAEAANLSKSRFMVGVSHEIRTPLNSIMGYAYLLENKML 749 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P + E I RS + ++ L DISKIE+G++++ + ++ E + ++ Sbjct: 750 AP---EKQNEGLKVIQRSAEHLSGLIEGLFDISKIEAGRLDILHDKINFQEFLKHLTGML 806 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 + N K+++ N+P ++ D R ++QI +N+LSNAI FTPSG +S + N Sbjct: 807 RFQVNNKKLVFIEDIPENLPEYVMTDQRRLRQILINLLSNAIKFTPSGS---VSFSVRWN 863 Query: 735 EEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E+ +RDTG+G+ + ++E+ +PF + + R +GTGLGL + + +V G+F Sbjct: 864 MEIATFEIRDTGIGIPDSDIERIQEPFQRSSHPDSHRIQGTGLGLTITRLLVQILGGEFT 923 Query: 794 IFSTPAKGTLIEIIFPLYDT 813 I ST +GT + L T Sbjct: 924 IKSTVGQGTTCRVRLMLSQT 943 >gi|13473203|ref|NP_104770.1| hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099] gi|14023951|dbj|BAB50556.1| Hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099] Length = 1391 Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 139/252 (55%), Gaps = 19/252 (7%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K + +LS A++ A KS+FLA +SHEIRTP+ ++G +E++ Sbjct: 815 DITELKMREAELSEARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNL---- 870 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +P+ + + I +SGN +L I+ND+LD SKI++G+M L P +L EA+ + +LV A Sbjct: 871 DPKQKTFTDIIVKSGNALLTIINDILDFSKIDAGQMVLDPAPFNLAEAIEDVATLVSTRA 930 Query: 680 NEK--RILIRTSFANNIPRI----LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT- 732 EK +++R PR+ + D+ ++QI N+L NA+ FT G +++ T Sbjct: 931 KEKDLELIVRVE-----PRLESLFVGDVGRIRQIVTNLLGNAVKFTDE-GHVLVDVTGER 984 Query: 733 --SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + + V DTG+G+ +L+ + F Q+ S R EGTGLGL + +V+ G Sbjct: 985 VPTGTRLTISVTDTGIGIPEEKLKLVFEKFSQVDTSSTRRHEGTGLGLAITSRLVELMGG 1044 Query: 791 KFYIFSTPAKGT 802 + S KG+ Sbjct: 1045 TIGVESAEGKGS 1056 >gi|304412838|ref|ZP_07394438.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|304348801|gb|EFM13219.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] Length = 964 Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 110/378 (29%), Positives = 193/378 (51%), Gaps = 23/378 (6%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPFTVFLEQNTPSV---- 508 L + L A+ D + I+ +G ++ N A ++LFGY E I R + + ++ S Sbjct: 206 LLATLAASLDSLITIDIDGRVVEFNLAATRLFGYSRHEAIGRYLEELIIPKSQHSSHRGG 265 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568 M Y + + +E + E + L ++ KL ++ + DISE K + Sbjct: 266 MERYRQTGSGNIINKRIELLATCKAGNEIPIELEVVPIKLGNEILFTAFLRDISERKASE 325 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 KL AK+ AE + KS FLA +SHEIR+PL AI+G E++ + + N +AN Sbjct: 326 LKLQLAKEQAELGNKVKSRFLATMSHEIRSPLNAILGGVELLLHSKL----NKEQRIHAN 381 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQLYANEKRIL 685 +G+ +L+ +ND+LD SKIE+G+M L FEP D+ V++ + +++ A +K + Sbjct: 382 ITREAGSALLNTINDILDFSKIEAGQMVLESNEFEP---DKLVAQVLQILEPKAYDKGLQ 438 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRV 741 + + N+P+ +L D + + Q+ N++ NAI F+ SG ++ I+ S ++ RV Sbjct: 439 LVSFVDRNVPQTLLGDRQRLNQVIHNLVDNAIKFSVSGTITVEMWIADNQQSLMQLFCRV 498 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G+G++ K K F Q+ ++ +GTGLGL + + ++ G+ + S KG Sbjct: 499 TDSGIGISEEAQSKLFKEFSQVHDTHNTNYKGTGLGLAICRELITMMGGEIELESELDKG 558 Query: 802 TLIEIIFPLYDTSHPHDC 819 F Y + PH+ Sbjct: 559 C----CFTFYVSLQPHEA 572 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 2/66 (3%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + VD R + +E ++L +IL++ DG IIN +G I N A+S+LFGY +++ + Sbjct: 62 DKVDAR--TKALEAANIRLNTILDSAVDGFVIINDKGTITDINPAISRLFGYAHNELIGQ 119 Query: 496 PFTVFL 501 +FL Sbjct: 120 NVAIFL 125 >gi|323493551|ref|ZP_08098673.1| hypothetical protein VIBR0546_14560 [Vibrio brasiliensis LMG 20546] gi|323312374|gb|EGA65516.1| hypothetical protein VIBR0546_14560 [Vibrio brasiliensis LMG 20546] Length = 878 Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 87/251 (34%), Positives = 137/251 (54%), Gaps = 7/251 (2%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I + K+ + L AK+ AE S KS FLA +SHEIRTPL IIG +E++ + Sbjct: 364 IDQQKEYERNLVSAKENAEAASQAKSVFLANMSHEIRTPLNGIIGMAEILSDSHLSSSQK 423 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 E + ID S + +L ++ND+LD+SKIESG + L V L E V + ++++ A Sbjct: 424 ----EILSDIDTSSHALLVLINDILDLSKIESGNLILSVHTVCLREMVFDTVNMLTSKAL 479 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 ++ + ++ FA+N+P I D KQ+ +N+LSNA+ FT G + ++++ Sbjct: 480 KQDVELKVDFADNLPDNIEIDDFRFKQVLMNLLSNAVKFTQQGS--VSVELLIEGQQLVC 537 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V D+GVG++ +L + KPF Q S R GTGLGL + +++ G + STP Sbjct: 538 HVADSGVGISPEKLTEIFKPFTQEDGSITRRFGGTGLGLAICNQLIEIMQGTISVSSTPG 597 Query: 800 KGTLIEIIFPL 810 G+ + PL Sbjct: 598 VGSRFTVSVPL 608 >gi|149177489|ref|ZP_01856092.1| probable sensor/response regulator hybrid [Planctomyces maris DSM 8797] gi|148843639|gb|EDL57999.1| probable sensor/response regulator hybrid [Planctomyces maris DSM 8797] Length = 844 Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 136/230 (59%), Gaps = 7/230 (3%) Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 KI ++ S+ KS+F+A +SHEIRTP+TA++G+++++ G +P +++ I ++G+ Sbjct: 460 KIGQQASAAKSEFVANMSHEIRTPMTAVLGYADLLA----GSENDPEKLKHLRMIQKNGS 515 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +LDI+ND+LD+SKIE+GKM E + +E +++ S++ + A EK++ +A IP Sbjct: 516 FLLDIINDILDLSKIEAGKMECVTEYFAANELIADVYSMMHIRAAEKKLDFSVEYATTIP 575 Query: 696 -RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--EVILRVRDTGVGMTNYE 752 +I +D + ++QI +N++ NA+ FT G ++ + S E + V DTG+G+T+ + Sbjct: 576 SQIESDPKRLRQILVNLIGNAVKFTSEGSIRLVISYDASGEPPAIQFEVIDTGIGITDAQ 635 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 L + + F Q S GTGLGL ++ + G + S GT Sbjct: 636 LSQLFQEFSQGDTSVTRAFGGTGLGLAISARLARMLGGSIEVHSKSGSGT 685 >gi|171317076|ref|ZP_02906280.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] gi|171097777|gb|EDT42601.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] Length = 1093 Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 88/248 (35%), Positives = 140/248 (56%), Gaps = 11/248 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ + L+ A ++AE S KS FLA +SHEIRTP+ A++G E++K R G + + Sbjct: 559 KRAEGDLAAAIEVAEDASRAKSTFLATMSHEIRTPMNAVLGVLELLKQSR-GTIESQSAS 617 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 A Y S + +L ++ D+LD+SKIESGK+ L EP+ D V ++ + A ++ + Sbjct: 618 IDAAY--DSAHALLSLIEDILDLSKIESGKLELAPEPIDCDALVRSVANVFEGLARQRHL 675 Query: 685 LIRTSFANNIPRILA---DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI--- 738 L S N PR L+ D ++QI N+LSNA+ FT +GG + + ++ + Sbjct: 676 LFSVSIDN--PRRLSVTIDPIRLRQILSNLLSNAVKFTHTGGVSLEAMLRADAQDQVHIE 733 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 LRV+DTG+G+ E EK +PF Q + + G+GLGL + + +V+ G + STP Sbjct: 734 LRVKDTGIGIAAGEQEKLFQPFVQADRTIGAKFGGSGLGLAICRRLVELMGGALTLKSTP 793 Query: 799 AKGTLIEI 806 GT +E+ Sbjct: 794 GVGTTVEV 801 >gi|300697811|ref|YP_003748472.1| sensory histidine kinase in two-component regulatory system [Ralstonia solanacearum CFBP2957] gi|299074535|emb|CBJ54086.1| sensory histidine kinase in two-component regulatory system [Ralstonia solanacearum CFBP2957] Length = 675 Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 91/259 (35%), Positives = 140/259 (54%), Gaps = 13/259 (5%) Query: 560 DISEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 DI+E +Q + + S A++ AE+ S K DFLA VSHE+RTPL A++G+++++ Sbjct: 266 DITEHRQAEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLAM 325 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + P + I+RS + +++DLLD+S I SGK+ L PV L + + A Sbjct: 326 R---PYDEAMFRRGLAAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERAR 382 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 ++ A EK+I I T + +P + D +KQ+ N+L+NA+ FTP GG I +S H Sbjct: 383 ETIEPMAREKQITIDTEY-PPVPLLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVS-VHA 440 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 S E ++ VRDTG+G+ L F Q S R G GLGL +AK +V+ + G+ Sbjct: 441 SPEGLVATVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRI 500 Query: 793 YIFSTPAK-GTLIEIIFPL 810 S GT + + PL Sbjct: 501 TATSNGTNLGTTMTVTLPL 519 >gi|326424323|ref|NP_762902.2| CheY-like receiver [Vibrio vulnificus CMCP6] gi|319999709|gb|AAO07892.2| FOG: CheY-like receiver [Vibrio vulnificus CMCP6] Length = 1328 Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 111/380 (29%), Positives = 190/380 (50%), Gaps = 35/380 (9%) Query: 444 KRKMEIEVMQLCS----ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFT 498 +RK E +V++ IL AT + + ++ +G L+ N S+L G + +I+ R P Sbjct: 459 QRKAEQKVLEQSQLNQEILNATPNPMYCLSAQGKYLTVNAKFSELTGLAMHEIVGRTPIE 518 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIKKLPFSSC 553 VF +Q+ +H+ T++ Q L + E LL + +++ + F++ Sbjct: 519 VFSQQDA----SHHFTQV-----HQELSQEQCSKNYELSLLDSQGGCRDMLVCEASFNNS 569 Query: 554 YSLT------MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + D++E KQ +++L AK A+ S K DFLA +SHEIRTP+ AI+G + Sbjct: 570 QGRVSGIVGILLDLTERKQMESELRDAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMA 629 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 + N +P +Y I+ S +L I+ND+LD SKIE+GK+++ SLDE Sbjct: 630 HLALNTEL----DPSQRKYLTRINESAKNLLGIINDILDFSKIEAGKLSVESIDFSLDEV 685 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII 726 +++ A EK I +P ++ D + Q+ +N+ NA+ FT G+I+ Sbjct: 686 FENLTNVISFKAQEKGIEFLLDIDPRVPVGLVGDPLRLGQVLVNLCGNAVKFTEK-GEIL 744 Query: 727 ISTT--HTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 +S S+++V LR V+DTG+G+ ++ F Q S GTGLGL ++K Sbjct: 745 VSVMPESQSSDDVTLRFSVKDTGIGIDKEKIADLFNAFSQADTSITREFGGTGLGLSISK 804 Query: 783 AMVDANMGKFYIFSTPAKGT 802 +V+ G+ + S G+ Sbjct: 805 QLVELMGGQLSVSSAVGMGS 824 >gi|307307214|ref|ZP_07586951.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] gi|306910269|gb|EFN40701.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] Length = 1139 Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 110/382 (28%), Positives = 192/382 (50%), Gaps = 31/382 (8%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L + L A+ D + I+ +G ++ N A ++LFGY + + + +LE+ H Sbjct: 381 LLATLAASLDSLITIDIDGRVVEFNLAATRLFGYSRHEAIGR----YLEELIIPKSQHSS 436 Query: 514 TEILSLDLRQT---------LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 RQT +E + E + L ++ KL ++ + DISE Sbjct: 437 HRGGMERYRQTGSGNIINKRIELLATCKAGNEIPIELEVVPIKLGNEILFTAFLRDISER 496 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K + KL AK+ AE + KS FLA +SHEIR+PL AI+G E++ + + N Sbjct: 497 KASELKLQLAKEQAELGNKVKSRFLATMSHEIRSPLNAILGGVELLLHSKL----NKEQR 552 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQLYANE 681 +AN +G+ +L+ +ND+LD SKIE+G+M L FEP D+ V++ + +++ A + Sbjct: 553 IHANITREAGSALLNTINDILDFSKIEAGQMVLESNEFEP---DKLVAQVLQILEPKAYD 609 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEV 737 K + + + N+P+ +L D + + Q+ N++ NAI F+ SG ++ I+ S ++ Sbjct: 610 KGLQLVSFVDRNVPQTLLGDRQRLNQVIHNLVDNAIKFSVSGTITVEMWIADNQQSLMQL 669 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 RV D+G+G++ K K F Q+ ++ +GTGLGL + + ++ G+ + S Sbjct: 670 FCRVTDSGIGISEEAQSKLFKEFSQVHDTHNTNYKGTGLGLAICRELITMMGGEIELESE 729 Query: 798 PAKGTLIEIIFPLYDTSHPHDC 819 KG F Y + PH+ Sbjct: 730 LDKGC----CFTFYVSLQPHEA 747 Score = 44.3 bits (103), Expect = 0.092, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 2/66 (3%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + VD R + +E ++L +IL++ DG IIN +G I N A+S+LFGY +++ + Sbjct: 237 DKVDAR--TKALEAANIRLNTILDSAVDGFVIINDKGTITDINPAISRLFGYAHNELIGQ 294 Query: 496 PFTVFL 501 +FL Sbjct: 295 NVAIFL 300 >gi|78778120|ref|YP_394435.1| PAS/PAC sensor signal transduction histidine kinase [Sulfurimonas denitrificans DSM 1251] gi|78498660|gb|ABB45200.1| PAS/PAC sensor signal transduction histidine kinase [Sulfurimonas denitrificans DSM 1251] Length = 697 Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 91/242 (37%), Positives = 140/242 (57%), Gaps = 6/242 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L +A A KS FLA +SHE+RTPL A+IGFS+++ + P R + Sbjct: 458 ELENAMIAALSAEKAKSTFLATMSHELRTPLNAVIGFSQILMAKDDMPKEKIR--TFVEK 515 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRT 688 I+ SG +L++VN++LD SKIESG+MNL+ + L+ ++E I LV+ A +K I +I+ Sbjct: 516 INISGKHLLNLVNNILDFSKIESGRMNLNKREILLENFINETILLVENEALKKDIEIIKK 575 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 F + AD + +KQ+ LNILSNAI F+ I IS + E I+ + D GVG+ Sbjct: 576 GFFE--ISLSADEQLLKQVILNILSNAIKFSNQNSAINISYKN-DEENHIISICDEGVGL 632 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + +LEK KPF Q+ Q +GTGLGL +++ +V+ + G + + KG+ I Sbjct: 633 SQEQLEKLFKPFSQVQEHQNTALKGTGLGLVISQKIVELHNGNIEVKTQSGKGSCFYISI 692 Query: 809 PL 810 P+ Sbjct: 693 PI 694 >gi|256829408|ref|YP_003158136.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578584|gb|ACU89720.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1070 Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/263 (31%), Positives = 141/263 (53%), Gaps = 15/263 (5%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 ++ D++E +Q + L AK+IAE + KS+FLA +SHE+RTPL I+G ++ Sbjct: 670 AVAFEDVTERQQVQQALVRAKEIAESANRAKSEFLANISHEVRTPLNGIMGMLQLAMQSE 729 Query: 615 FGPLGNPRYIEYANYI----DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 P E +YI + S NL L ++ND+LD +K+++GKM + SLD+ +S+ Sbjct: 730 VPP-------ELEDYIRTALESSRNL-LRVLNDVLDFTKVDAGKMEIVDRDFSLDDLLSQ 781 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS-- 728 A++ + A +K+I + S +I R + D ++QI N++ NA+ FT +G + + Sbjct: 782 AVNFFRALAMDKKISLVLSAPRDIGRFVGDEGRLRQILFNLMGNALKFTDTGSVTLEAWP 841 Query: 729 -TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 ++ VRD G+G+ +L + F Q+ + R +GTGLGLP+ K +V Sbjct: 842 VGEQGDATRILFAVRDEGIGIPTDKLGYVFESFTQVDGTYSRRYQGTGLGLPIVKRLVTL 901 Query: 788 NMGKFYIFSTPAKGTLIEIIFPL 810 G + S +GT I + PL Sbjct: 902 MGGNISVESMEGEGTTIFFVLPL 924 >gi|114562197|ref|YP_749710.1| PAS/PAC sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] gi|114333490|gb|ABI70872.1| PAS/PAC sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] Length = 869 Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 108/372 (29%), Positives = 193/372 (51%), Gaps = 22/372 (5%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 ++E+ D + + GII N+ + +L G + ++ PF + P + + Sbjct: 351 LIESNIDALTTTDPSGIITDVNKQMEELTGNNRDSLIGTPFKDYF--TDPEFAAAGIKRV 408 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIII-----KKLP--FSSCYSLTMHD-ISEWKQEK 568 LS + E +E ++S+ KL F +T + +++ EK Sbjct: 409 LSEKIISDYELTARTKNGKETVVSINATTFYHRDNKLQGIFYGARDVTERNRLNQKLLEK 468 Query: 569 N-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 N +L +AK +AEK + KSDFL+ +SHE+RTPL AI+GF++++++ P P Sbjct: 469 NIELENAKAVAEKANLAKSDFLSSMSHELRTPLGAILGFAQLMESSTPAP--PPAQKRSI 526 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I ++G +L+++N++LD++ IESGK+ + E VSL E + E + + + A I + Sbjct: 527 AQILKAGWYLLELINEILDLALIESGKLPMSLEAVSLSEVMQECVLMSEPQAQLHDIKVV 586 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 + + + D +KQ+ +N+LSNAI + GG +I+ + +S++ + VRDTG G Sbjct: 587 FTRSTTKDFLNVDRTRLKQVIINLLSNAIKYNRKGGSVILEHSQSSDDMMRFSVRDTGEG 646 Query: 748 MTNYELEKAMKPF---GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 ++ +L + +PF GQ N+Q EGTG+GL ++K +V++ G + ST G++ Sbjct: 647 LSAEQLGQLFQPFNRLGQEANNQ----EGTGIGLVVSKRLVESMGGVIGVQSTVGVGSV- 701 Query: 805 EIIFPLYDTSHP 816 F L T P Sbjct: 702 -FWFELKRTDEP 712 >gi|288942776|ref|YP_003445016.1| integral membrane sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288898148|gb|ADC63984.1| integral membrane sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 623 Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 92/329 (27%), Positives = 166/329 (50%), Gaps = 21/329 (6%) Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL---RQTLEKITL-GSTKEEKLLSLRII 544 V I R+P T L++ S + H T + L L R L + L G+ L L + Sbjct: 148 VRGIDREP-TDLLDRVVESALEHRRTTLAQLQLAARRHQLWTLILTGALMSGAALLLMWL 206 Query: 545 IKK---LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 + + P ++ ++ ++ A + + K +FLA +SHE+RTPLT Sbjct: 207 VDRNIGRPMATATAVA-----------RQMDRANAELARAAQAKDEFLAAMSHELRTPLT 255 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 +I+G SE + + GPL + + + + +G +L+++ND+LD+S++ SG+M+L ++ Sbjct: 256 SILGLSETMGDGLLGPL-SAQQEKAIRMVHENGTHLLELINDILDMSRVASGQMHLRWDQ 314 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V +D+ ++ L+ A K + + + + D R +KQ+ +N+L NA+ FTP Sbjct: 315 VPVDQLCEASLRLIGPSAKRKGLKVSLTIDPQARLVRGDSRRLKQMLVNLLGNAVKFTPE 374 Query: 722 GGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 GG I + + E+ + DTGVG+ + E+ +PF Q+ + + +GTGLGL L Sbjct: 375 GGAIGLDVQADPEHGELRFGIWDTGVGIPREQFERLFQPFVQLDSRPARQYDGTGLGLAL 434 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 M + + G+ + S +G+ EI P Sbjct: 435 VSGMAELHQGRIQVESEVGRGSRFEIRLP 463 >gi|241205856|ref|YP_002976952.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859746|gb|ACS57413.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1131 Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 135/255 (52%), Gaps = 8/255 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K + +L AE KS+FLA +SHEIRTP+ ++G +E++ Sbjct: 572 DVTELKSREEELRQLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNL---- 627 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + R + + I +SGN +L I+ND+LD SKI++G+M L + EAV + +L+ +A Sbjct: 628 DTRQKTFVDIIVKSGNALLTIINDILDFSKIDAGQMKLRKAAFDITEAVEDVATLLSSHA 687 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEV 737 EK I + A ++P ++ D +QI N++ NA+ FT G + + + E+ Sbjct: 688 AEKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVGFQPAAGGEI 747 Query: 738 I--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +R+ DTG+G+ +LE F Q+ S R EGTGLGL + +VD G + Sbjct: 748 MASIRIEDTGIGIPPEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYLNVE 807 Query: 796 STPAKGTLIEIIFPL 810 S KG++ I P Sbjct: 808 SEWGKGSVFTINLPF 822 >gi|39996404|ref|NP_952355.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39983284|gb|AAR34678.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] Length = 835 Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 91/270 (33%), Positives = 141/270 (52%), Gaps = 15/270 (5%) Query: 558 MHDISEWKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 +H++ E +EK +L A+K AE+ S KSDFLA +SHEIRTP+ AIIG ++++ + Sbjct: 300 IHNLEEKVEEKTAELILARKDAEEASRAKSDFLATMSHEIRTPMNAIIGINQLLVD---- 355 Query: 617 PLGNPRYIEYANYIDRS---GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 P E +D S +L I+ND+LD+S++E+ ++ L E V L V Sbjct: 356 ---TPLTQEQRRLLDDSTTAAESLLIIINDILDLSRVEARRLELFPEAVELRSFVESLRR 412 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTH 731 L + A K+I + S PR + D ++QI N+LSNA+ FTP+GG + +++ Sbjct: 413 LFAVQATRKQISLSVSVGEGTPRFVWCDPARLRQILTNLLSNALKFTPTGGVVTMVADQA 472 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + ++ V DTG+G+ + E + F Q +S GTGLGL + K +V+ G Sbjct: 473 PAGAGLVFTVSDTGIGIDKAKQESIFEMFRQADSSTTRIYGGTGLGLAITKGLVELMGGT 532 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHP--HDC 819 + S P G + PL P HDC Sbjct: 533 IAVESEPGSGATFSVCLPLEPADGPQFHDC 562 >gi|254506216|ref|ZP_05118360.1| PAS fold family protein [Vibrio parahaemolyticus 16] gi|219551034|gb|EED28015.1| PAS fold family protein [Vibrio parahaemolyticus 16] Length = 1319 Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 109/377 (28%), Positives = 193/377 (51%), Gaps = 28/377 (7%) Query: 444 KRKMEIEVMQLCS----ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFT 498 +RK E +V++ IL AT + + ++ G L+ N ++FG +++I+ R P Sbjct: 461 QRKAEKKVLEQSQLNQEILNATPNPMYCLSPHGKYLTVNAKFCEMFGLTMQEIVGRTPNE 520 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLE-KITLGSTKEEKLLSLRIIIKKLPFS------ 551 VF +T V E+ + E + GS++ ++L + + FS Sbjct: 521 VF-NASTGQVFTTVHQELRQTKGSRNYELSLCDGSSQNREML-----VYEASFSNGDGEI 574 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 S + D++E KQ +N+L AK++A+ S K DFLA +SHEIRTP+ AI+G + + Sbjct: 575 SGIVGILLDLTERKQFENELREAKELADAMSQAKGDFLANMSHEIRTPMNAILGMAHLAL 634 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 N +P +Y I+ S +L I+ND+LD SKIE+GK+ + SLDE Sbjct: 635 NTEL----DPSQKKYLTRINESAKNLLGIINDILDFSKIEAGKLTVESIDFSLDEVFDNL 690 Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 +++V A+EK + +P ++ D + Q+ +N+ SN++ FT G+I++S Sbjct: 691 VNVVSYKAHEKGVEFLLDIDPKVPIGLVGDPLRLGQVLVNLCSNSVKFTEK-GEIVVSAL 749 Query: 731 HTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 +E + V+DTG+G+ +++ + F Q +S + GTGLGL ++K +V+ Sbjct: 750 VEQLDENRATIRFSVKDTGIGIAKEKIQHLFRAFSQADSSITRQFGGTGLGLSISKQLVE 809 Query: 787 ANMGKFYIFSTPAKGTL 803 G+ + S+ G++ Sbjct: 810 LMGGELVVSSSEGTGSV 826 >gi|163757825|ref|ZP_02164914.1| putative sensor histidine kinase transmembrane protein [Hoeflea phototrophica DFL-43] gi|162285327|gb|EDQ35609.1| putative sensor histidine kinase transmembrane protein [Hoeflea phototrophica DFL-43] Length = 788 Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 96/298 (32%), Positives = 151/298 (50%), Gaps = 21/298 (7%) Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 ++ LG + + + + R I + P S C +++ ++ + +L A + AE Sbjct: 210 ELVLGEGEAQSVWTWRETIARDPVSGKMFVHCVG---RNVTATRKAEAELVEALERAEAA 266 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID---RSGNLVL 638 S K+ FLA VSHEIRTPL I+G + ++ P E A+YI SG +L Sbjct: 267 SHAKTRFLATVSHEIRTPLNGILGMTHLLSQTETTP-------EQASYIRNARESGQSLL 319 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RI 697 ++ DLLD++ IE+G++NL E L E V L+ A+EK I I A + P RI Sbjct: 320 SLIEDLLDVTSIEAGRLNLREEEGDLSELVHGVCELMASKAHEKNIEIAVHIAVDAPQRI 379 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 +D+ V+QI N++ NAI FT SGG ++ N ++ V DTG G+ + K Sbjct: 380 ASDIGRVRQILFNLVGNAIKFTESGG--VLVEVSLENAALVFSVTDTGPGLKETDKAKIF 437 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 + F + N + G GLGL ++ +V+A G+ + STP KG+ P+ D S+ Sbjct: 438 EEFERADNGPTRKHGGAGLGLSISARIVEALGGEIGVDSTPGKGSKFHFSVPIADISN 495 >gi|75909218|ref|YP_323514.1| histidine kinase [Anabaena variabilis ATCC 29413] gi|75702943|gb|ABA22619.1| histidine kinase [Anabaena variabilis ATCC 29413] Length = 603 Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 86/254 (33%), Positives = 138/254 (54%), Gaps = 5/254 (1%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + I +Q+ L + + E+ + K+ FLA SHEIRTPL++IIGF+ ++ Q + P Sbjct: 206 LKKIQSLQQKSQNLGISNQELERTNQLKNQFLANTSHEIRTPLSSIIGFTHLLLAQGYDP 265 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 R+ EY N I SG +L ++ND+LD+SKIE+ ++ + +E V++ E ++L++ Sbjct: 266 -TRERHHEYLNIIQSSGKHLLALINDILDLSKIEANQLEVQWEKVNVPELCQNVLTLIKE 324 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A K + + +I +AD +KQ+ LN+L NA+ FT G + T E Sbjct: 325 KAANKGVKLSLELDPHIKTFVADPLRLKQMLLNLLFNALKFTNQG---TVGLKVTQRESF 381 Query: 738 I-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 I V DTG G++ L +P+ QIPNS + EGTGLGL + + + + + G + S Sbjct: 382 IHFTVWDTGSGISPENLALLFQPYFQIPNSSVAQHEGTGLGLVVTRKLAEIHNGSVEVES 441 Query: 797 TPAKGTLIEIIFPL 810 G+ II PL Sbjct: 442 QVDHGSRFTIILPL 455 >gi|298505413|gb|ADI84136.1| sensor histidine kinase response regulator, HAMP domain-containing, putative heme-binding site [Geobacter sulfurreducens KN400] Length = 835 Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 91/270 (33%), Positives = 141/270 (52%), Gaps = 15/270 (5%) Query: 558 MHDISEWKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 +H++ E +EK +L A+K AE+ S KSDFLA +SHEIRTP+ AIIG ++++ + Sbjct: 300 IHNLEEKVEEKTAELILARKDAEEASRAKSDFLATMSHEIRTPMNAIIGINQLLVD---- 355 Query: 617 PLGNPRYIEYANYIDRS---GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 P E +D S +L I+ND+LD+S++E+ ++ L E V L V Sbjct: 356 ---TPLTQEQRRLLDDSTTAAESLLIIINDILDLSRVEARRLELFPEAVELRSFVESLRR 412 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTH 731 L + A K+I + S PR + D ++QI N+LSNA+ FTP+GG + +++ Sbjct: 413 LFAVQATRKQISLSVSVGEGTPRFVWCDPARLRQILTNLLSNALKFTPTGGVVTMVADQA 472 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + ++ V DTG+G+ + E + F Q +S GTGLGL + K +V+ G Sbjct: 473 PAGAGLVFTVSDTGIGIDKAKQESIFEMFRQADSSTTRIYGGTGLGLAITKGLVELMGGT 532 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHP--HDC 819 + S P G + PL P HDC Sbjct: 533 IAVESEPGSGATFSVCLPLEPADGPQFHDC 562 >gi|2439990|gb|AAB71342.1| two component sensor regulator; ORF2 [Pseudomonas tolaasii] Length = 706 Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/239 (34%), Positives = 145/239 (60%), Gaps = 12/239 (5%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ +PR+++Y Sbjct: 66 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----SPRHVDYLGT 121 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRT 688 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ Sbjct: 122 IEKSADNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSL 181 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILR--VRD 743 + + ++ D +KQI N++SNAI FT G I++ +EE V LR V+D Sbjct: 182 VYRDTPLAVVGDPLRLKQILTNLISNAIKFTREG--TIVARAMVEDEEEDSVQLRISVQD 239 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TG+G++N ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 240 TGIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 298 >gi|239828009|ref|YP_002950633.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. WCH70] gi|239808302|gb|ACS25367.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. WCH70] Length = 585 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 110/379 (29%), Positives = 183/379 (48%), Gaps = 54/379 (14%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E+E +L +++E G+ +I+ G I NRA + F D L +P+T Sbjct: 238 EMETDRLHTLIENVGIGLILIDSRGYINLINRAFKESFHIHPVDYLYRPYTEAFAHK--- 294 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 ++ Q + +I + TK K L L I I + F Sbjct: 295 ------------EIVQLVNEIFMKETKIRKQLLLTIGIDRKHFEVYGAPIIGTNDEWKGI 342 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DF+A VSHE++TP+T+I GF+E + + Sbjct: 343 VLVFHDITELK----KLEQMRK----------DFVANVSHELKTPITSIKGFAETLLD-- 386 Query: 615 FGPLGNPRYIEY-ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + + + +EY + I + + +V DLLD+SKIE LH E V L + + E Sbjct: 387 -GAMKDEQTLEYFLSIIWKESERLQTLVQDLLDLSKIEQQGFRLHLETVDLADLLREIAV 445 Query: 674 LVQLYANEKRILIRTSFANNIPRIL---ADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + Q + EK I F + P+ + D +KQI +N+++NA+ +TP GG++ + Sbjct: 446 MFQQKSEEKGI----DFYLHAPKSVYMEGDANRIKQIFINLITNALTYTPKGGKVEL-MI 500 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 +E+++ V+DTG+G+ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 501 EEKEKEILVHVKDTGIGIDEQEIPRIFERFYRVDKARGRNSGGTGLGLAIVKHLVEAHHG 560 Query: 791 KFYIFSTPAKGTLIEIIFP 809 + ST KGT + FP Sbjct: 561 HITVKSTVGKGTTFTVHFP 579 >gi|153874109|ref|ZP_02002450.1| sensory transduction histidine kinase [Beggiatoa sp. PS] gi|152069427|gb|EDN67550.1| sensory transduction histidine kinase [Beggiatoa sp. PS] Length = 403 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/242 (35%), Positives = 139/242 (57%), Gaps = 3/242 (1%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK+ AE+ +S KS F+A +SHE+RTP+ AIIG+SE++K + L ++ + I Sbjct: 157 LQKAKQAAEEANSVKSQFMANISHELRTPMNAIIGYSELLKEEA-EDLQITGLVDDIDNI 215 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 +++G +LDI+ND+LD SKIE+GKM L E + +++ +VQ + + Sbjct: 216 EKAGRHLLDIINDVLDFSKIETGKMTLSLENFEILILINDIKMIVQPLVKNQLNHLEIDC 275 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI-LRVRDTGVGM 748 A+NI + ADL V++I LN+LSNA FT +G ++I+S N + I +V DTG+G+ Sbjct: 276 ADNIGAMYADLSKVRRILLNLLSNASKFTENGTIKLIVSKESEENTQWIKFKVNDTGIGI 335 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 T+ + ++ F Q S + G G+GL + K VD G ++ S +G+ + Sbjct: 336 TDEQQQQIFHTFTQADGSSTRKYGGIGMGLTVTKRFVDIMQGTIHVESQLGQGSTFTVRL 395 Query: 809 PL 810 P+ Sbjct: 396 PI 397 >gi|241763479|ref|ZP_04761532.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN] gi|241367320|gb|EER61651.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN] Length = 1618 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 88/258 (34%), Positives = 140/258 (54%), Gaps = 8/258 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI++ ++ + L AK++AE+ ++ KS+FLA +SHEIRTP+ AIIG S + Sbjct: 845 TFVDITDRQKAEQDLRLAKELAEETTALKSNFLANMSHEIRTPMNAIIGMSHLALKSGL- 903 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 NPR +Y + I ++G +L ++ND+LD SKIE+GK+ + P LD + +V Sbjct: 904 ---NPRQHDYVSKIQQAGQHLLGVINDILDFSKIEAGKLTVEKHPFVLDRMLEGVADVVG 960 Query: 677 LYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 A K + + A ++ P ++ D + QI +N +NAI FT G I + Sbjct: 961 YKAGAKGLELVCDVAADVPPNLVGDSLRLGQILINFSNNAIKFTERGEISIAVRVQEQDA 1020 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + V LR VRDTG+G+T ++ + + F Q S R GTGLGL + K++ + G+ Sbjct: 1021 QRVRLRFEVRDTGIGLTPEQMGRLFESFQQADASTTRRYGGTGLGLAICKSLAELMGGEV 1080 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S KG+ + PL Sbjct: 1081 GVDSEYGKGSTFWVSLPL 1098 >gi|237653646|ref|YP_002889960.1| PAS sensor protein [Thauera sp. MZ1T] gi|237624893|gb|ACR01583.1| PAS sensor protein [Thauera sp. MZ1T] Length = 2109 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 105/384 (27%), Positives = 182/384 (47%), Gaps = 28/384 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGY--------PVEDILRKPFTVFLEQNTPS 507 S+ E +GI ++ +G LS N A+ +L G+ + D+ + F +Q Sbjct: 1485 SLYENAIEGIFRVDPDGRFLSANPALVRLLGHDSAAEFLTGITDVSTQCFARAEDQRRFL 1544 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567 + +++ + R ++ E +S R ++ CY ++ DI E ++ Sbjct: 1545 GRLNMEEKVVGFETRWRRRD----GSEVEVSISARRVLDDGGRLRCYEGSLTDIGE-RKA 1599 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 K + A++ AE S KSDFLA +SHEIRTP+ I+G ++++ P E+ Sbjct: 1600 KERAELARERAEAASRAKSDFLAAMSHEIRTPMNGILGMAQLLARSGLA----PGQAEWV 1655 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + I SG+ +L I++D+LD SKIE+G++ L P S EA++ ++ + +K +++R Sbjct: 1656 DAIRASGSTLLGILDDVLDFSKIEAGQLTLESAPFSPAEALAALRPMLATMSAQKGLVLR 1715 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST---THTSNEEVILRVRD 743 +P +L D R++ QI LN+ NA+ FT G + + + L V D Sbjct: 1716 LEIDPALPGGVLGDRRALHQIVLNLAGNAVKFTARGFVAVRARCLPARAGRCRLGLEVED 1775 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G+G+ + F Q S R GTGLGL + + +VD G + S P +G+ Sbjct: 1776 SGIGIAEEAQRRIFTEFTQADGSITRRFGGTGLGLAICRRLVDLQGGSLGVRSRPGEGST 1835 Query: 804 --IEIIFPLYDTS-----HPHDCI 820 E+ +PL + PH I Sbjct: 1836 FSCELEYPLATPAPRASPRPHAAI 1859 >gi|24349687|gb|AAN56450.1|AE015782_2 sensor histidine kinase/response regulator [Shewanella oneidensis MR-1] Length = 929 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 93/246 (37%), Positives = 141/246 (57%), Gaps = 10/246 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A + S KS+FLA +SHE+RTPL +IGF+ +++K PL + + ++Y N Sbjct: 280 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKT----PLHSSQ-VDYIN 334 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS +L I+ND+LD SK+E+GKM L P L E + E I+L+ A K + + Sbjct: 335 TIERSATNLLAIINDILDFSKLEAGKMVLESMPFGLRETLGETITLISGSAQAKGLELVV 394 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDT 744 A N+P + D V QI N++ NAI FT SG ++ + ++E+V+LR V DT Sbjct: 395 DIAPNVPDNVNGDSMRVCQIINNLVGNAIKFTDSGSVLVKLELQAQTDEQVVLRCDVIDT 454 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + + FGQ +S R GTGLGL + K +V+ G+ S+ KG+ Sbjct: 455 GIGIDESQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSVDKGSNF 514 Query: 805 EIIFPL 810 PL Sbjct: 515 WFTLPL 520 >gi|254443730|ref|ZP_05057206.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198258038|gb|EDY82346.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 572 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 136/234 (58%), Gaps = 10/234 (4%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK AE+ + KS+FLA +SHE+RTP+ +IGF+ ++ + + ++ I S Sbjct: 188 AKDEAEQANMAKSEFLAMMSHELRTPMNGVIGFASLLLETQM----DDEQTDFVETIRNS 243 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G+ +L I+ND+LD SKIE+G+ L +L + E IS+ A+EK + + +++ Sbjct: 244 GDSLLSIINDILDFSKIEAGREELELVSFNLQNTLQEVISITTPIASEKELKLDLEYSDA 303 Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGM 748 +P ++ D ++Q+ LN++SNAI FTP GG + I+ T SN + V + V DTG+G+ Sbjct: 304 LPEYVIGDPGKLRQVVLNLVSNAIKFTPDGG-VTITATPNSNSDTHSMVRIAVSDTGIGI 362 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + ++ PF Q +S + + GTGLGL ++K + + G I S+P +G+ Sbjct: 363 SKEVQKRLFHPFTQADSSTRRKHGGTGLGLVISKRLSEMMGGDITIDSSPGEGS 416 >gi|114048796|ref|YP_739346.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] gi|113890238|gb|ABI44289.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] Length = 1767 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/251 (33%), Positives = 140/251 (55%), Gaps = 8/251 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 ++M D++E K ++L AK+ A+ S K DFLA +SHEIRTP+ AIIG S++ Sbjct: 1011 VSMVDMTELKLLSDELLVAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTEL 1070 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + + Y I+R+ +L I+ND+LD SKIE+GK+++ P LD + + + Sbjct: 1071 ----DKKQKNYVEKIERASKSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMF 1126 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTS 733 A K++ + + A N+PR + D + Q+ +N+++NAI FT G ++ ++ Sbjct: 1127 SEKAAHKQLELLFAVAPNVPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLLSLNLVEQQ 1186 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 N++V+LR VRD+G+G+T + K K F Q S + GTGLGL + K +V+ G Sbjct: 1187 NDDVVLRFSVRDSGIGLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGT 1246 Query: 792 FYIFSTPAKGT 802 + S G+ Sbjct: 1247 IGVESQFGHGS 1257 >gi|146337252|ref|YP_001202300.1| putative sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146190058|emb|CAL74050.1| Putative sensor histidine kinase [Bradyrhizobium sp. ORS278] Length = 835 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 105/362 (29%), Positives = 175/362 (48%), Gaps = 23/362 (6%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 L++ ++G+A+ G + N A +K++ + + P +E S+ + Sbjct: 476 LDSLAEGVAVFGSNGRVELFNPAFAKMWRLSPDSLREHPHIDTVESWCRSIYDD------ 529 Query: 518 SLDLRQTLEKITLGSTKEEKL-LSLRIIIKKLPFSSCYS---------LTMHDISEWKQE 567 S+ R E IT + E +L ++L++ K C S LT DI++ + Sbjct: 530 SVAWRTIREAIT---SIENRLDVALKLERKDGSVLDCMSRPLPDGATMLTFQDITDTENV 586 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + L + + E K DF+ VS+E+R PLT IIGF+ + + GPL P+ EY Sbjct: 587 ERALRESNEALEAAGQMKIDFVHHVSYELRAPLTTIIGFAHFLSDPSTGPL-TPKQAEYL 645 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 +Y+ +S N +L + N++LD++ I++G M L PV +A+ A VQ RI +R Sbjct: 646 DYVTKSTNALLALTNNILDLATIDAGAMKLELGPVDAAKAIEAAAEGVQDRLATDRIRLR 705 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 A ++ + D R V Q+ N+L+NA+ F+P +I+S T + V V D G G Sbjct: 706 VEVAPDVGSFVGDERRVVQVLYNLLANAVGFSPQDSTVIVSARRT-DHSVAFAVTDCGPG 764 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + ++ F + SQ R G GLGL L ++ V+ + GK + S KGT + Sbjct: 765 IPADIKDQMFDWF--VSRSQGSRHRGAGLGLSLVRSFVELHGGKVRMDSVVGKGTTVTCD 822 Query: 808 FP 809 FP Sbjct: 823 FP 824 >gi|262164440|ref|ZP_06032178.1| hypothetical protein VMA_000882 [Vibrio mimicus VM223] gi|262026820|gb|EEY45487.1| hypothetical protein VMA_000882 [Vibrio mimicus VM223] Length = 1576 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 114/416 (27%), Positives = 201/416 (48%), Gaps = 20/416 (4%) Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 ++ M F+ + Q+ + + E+ + ++ +K E EV++ ++LE++ + I++ Sbjct: 659 AIMMVFVLMSVSIQYWLWLTSMVKQREEWNLQLQNQK-EKEVLRFKALLESSPEATLIVD 717 Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPF-TVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 GII N K+FGY +++ P +FL + H +LR ++I Sbjct: 718 TSGIIKMVNEEAEKVFGYGRDELEGYPMHRLFLHDLESARAKHAQW----YELRPGNQRI 773 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 + +E + I + S+++ +I++ + L A + AE+ + KS Sbjct: 774 EIAVRSDETEFPVEISSSSVQMDDGLLISVSIRNITDRLAFEQTLKKALRDAEQATQAKS 833 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 FLA SHEIRTPL AI+G + ++ ++ R + + I SG +L IVND+LD Sbjct: 834 VFLANTSHEIRTPLNAILGLTHLLSDESLTE-SQHRLV---DKIGISGKSLLGIVNDVLD 889 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705 +SKIE+ +M L P+ L E + E S+ A K + + ++P ++AD ++ Sbjct: 890 LSKIEANEMILEALPLDLKEFLEEVASVFSTQAEAKNLDFKLEMGADLPHWVIADSMRLR 949 Query: 706 QIALNILSNAIHFTPSG-----GQIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMK 758 QI N+LSNA+ FT G ++I E+ I+R + DTG+G++ ++ K Sbjct: 950 QILTNLLSNALKFTSVGHIALHAEVIDKFIWKGAEKNIVRFSITDTGIGISEEAQKRLFK 1009 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 PF Q S R GTGLGL + ++ GK + S+ +G+ PL S Sbjct: 1010 PFSQADTSTSRRFGGTGLGLSIVHKLLGLMEGKIGVESSEGQGSTFWTEMPLQTLS 1065 >gi|254444627|ref|ZP_05058103.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198258935|gb|EDY83243.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 561 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 86/242 (35%), Positives = 139/242 (57%), Gaps = 4/242 (1%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + +L AK++AE+ +++KS+FLA +SHE+R+PL +IGFS++I+ Q R EYA Sbjct: 178 REELISAKEMAERTNAYKSEFLANMSHELRSPLNCVIGFSDLIE-QDVEEKCFERIGEYA 236 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I +G +L ++ ++LD+++I++GKM L V LDE + S+++L A EKR+ I Sbjct: 237 GLIKAAGKHLLGMITEILDLARIDTGKMRLEKREVHLDELLELIASMLKLPAREKRLSIE 296 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 + R AD R + Q+ N+LSNAI F+ G +I +S E V + V D G G Sbjct: 297 LDC--DPIRFEADERRLHQVLHNLLSNAIKFSSEGSRIGVS-AQGQGEIVEIVVWDEGRG 353 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + L++ +PF Q+ + GEG GLGL + K +VD + G+ + S G+ + Sbjct: 354 IAPDWLDRIFEPFEQVESGDSELGEGAGLGLAIVKRIVDLHGGQVSVESELGVGSRFSVR 413 Query: 808 FP 809 P Sbjct: 414 LP 415 >gi|161486828|ref|NP_719006.2| hybrid sensory histidine kinase BarA [Shewanella oneidensis MR-1] Length = 935 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 93/246 (37%), Positives = 141/246 (57%), Gaps = 10/246 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A + S KS+FLA +SHE+RTPL +IGF+ +++K PL + + ++Y N Sbjct: 286 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKT----PLHSSQ-VDYIN 340 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS +L I+ND+LD SK+E+GKM L P L E + E I+L+ A K + + Sbjct: 341 TIERSATNLLAIINDILDFSKLEAGKMVLESMPFGLRETLGETITLISGSAQAKGLELVV 400 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDT 744 A N+P + D V QI N++ NAI FT SG ++ + ++E+V+LR V DT Sbjct: 401 DIAPNVPDNVNGDSMRVCQIINNLVGNAIKFTDSGSVLVKLELQAQTDEQVVLRCDVIDT 460 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + + FGQ +S R GTGLGL + K +V+ G+ S+ KG+ Sbjct: 461 GIGIDESQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSVDKGSNF 520 Query: 805 EIIFPL 810 PL Sbjct: 521 WFTLPL 526 >gi|226227266|ref|YP_002761372.1| two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] gi|226090457|dbj|BAH38902.1| two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] Length = 745 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 113/389 (29%), Positives = 189/389 (48%), Gaps = 33/389 (8%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 R+ E+ +L + L+ DGI + G I+ N A +LFG+ +I + N Sbjct: 13 RRAEMSESRLRATLDTAVDGIVTTDAIGTIVGFNPAAERLFGWDSAEITGR--------N 64 Query: 505 TPSVMNHYLTEILSLDLRQ------TLEKI-----TLGSTKEEKLLSLRIIIKKLPF--S 551 VM +I+ L +Q E + LG ++ L+ LR+ + ++ Sbjct: 65 IKEVMPSR-DQIMQLREQQHGLIARAQEYVGSSSEILGRRRDGSLVPLRLALGRMQLHDE 123 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 Y + DISE + ++ L A AE+ ++ KS FLA +SHEIRTP+ AIIGF+E++ Sbjct: 124 MLYVGFVSDISERRAMESSLREAAAQAERAAAAKSTFLANMSHEIRTPMNAIIGFTELLL 183 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + + + +S +L ++ND+LD +++E G M L SL + Sbjct: 184 QSDL----TTTQRNHLSTVRQSSRSLLGLINDILDTTRLEKGGMVLEMIDFSLKGISMQI 239 Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 S ++L A + + + TS+ N+P L D + Q+ N++ NAI FT GG + + Sbjct: 240 ESSLRLSAQARGLSLTTSYPANLPEYFLGDPLRILQVLTNLVGNAIKFTERGG--VELSF 297 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + +E+VI+ VRDTG+GMT ++ PF Q S R GTGLG +++ +V+ G Sbjct: 298 SSEDEQVIIMVRDTGIGMTQEQVASIFTPFTQADASISRRFGGTGLGTTISRQLVELMDG 357 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 + + S +G+ + PL P C Sbjct: 358 QIEVESALGQGSCFRVRLPLA----PGKC 382 >gi|162448655|ref|YP_001611022.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161159237|emb|CAN90542.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 534 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 94/293 (32%), Positives = 155/293 (52%), Gaps = 25/293 (8%) Query: 541 LRIIIKKLPFSSCYSL---TMHDIS------EWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 LR ++ + FS SL TMH S E Q+ +L A + ++ KS+FLA Sbjct: 227 LRSVLDLILFSGHKSLLTSTMHVASIRESFRELSQKNAELEQAYERLKELDRLKSNFLAT 286 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 VSHE+RTPLT+I+G+SE++ GPL + + E+ + I +L ++ LLD+SK+E Sbjct: 287 VSHELRTPLTSIMGYSEMLAEGIGGPLTDEQR-EFIDTIRSKSEQLLGLIMSLLDLSKLE 345 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 SG + +H V++ + EA S + A++K + +R +++P +L D ++Q+ +N+ Sbjct: 346 SGTLIVHRTEVAVGPVLVEAASTIAPAASKKGVELRIQAEDDLPPVLGDGDRLRQVFINL 405 Query: 712 LSNAIHFTPSGGQIIISTTHTS---------------NEEVILRVRDTGVGMTNYELEKA 756 + NA+ FT +GG++++ S + V +RV DTG+G+ E K Sbjct: 406 VENAVKFTEAGGEVLLVARAVSEDMDDLPGLVLVAPLQQAVEIRVVDTGIGIPAGERLKV 465 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 PF QI S GTGLGL + K +V+A+ G I +GT+ + P Sbjct: 466 FDPFYQIDQSSTREHGGTGLGLSIVKRLVEAHSGTVRIEPNDPRGTVFVVKLP 518 >gi|87307413|ref|ZP_01089558.1| probable sensor/response regulator hybrid [Blastopirellula marina DSM 3645] gi|87290153|gb|EAQ82042.1| probable sensor/response regulator hybrid [Blastopirellula marina DSM 3645] Length = 672 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/255 (32%), Positives = 149/255 (58%), Gaps = 9/255 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI + K + KL+ A + A + K++FLA +SHEIRTP+TAI+G++E++ Q Sbjct: 259 TVTDIHKQKLIEEKLNLALQQAAAANVVKTEFLANMSHEIRTPMTAILGYAELLAQQE-- 316 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + + I ++G +++I+ND+LD+SKIE+GK+++ EP+ L + E SL+ Sbjct: 317 --TDLEKLHFLKVIRQNGEFLVEIINDILDLSKIEAGKLDITLEPLELSRMIEEIQSLML 374 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 + A E I FA +P RI +D + ++QI +N++ NA+ FT G ++++S Sbjct: 375 VRAAENDIEFNVDFAATVPERIRSDSKRLRQILINLIGNAVKFTQEGSVRLVVS---PDA 431 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E + V DTG+GMT ++E+ PF Q +S + G+GLGL +++ + G+ + Sbjct: 432 ERIQFDVIDTGIGMTQQQVEQLFLPFQQADSSVSRKFGGSGLGLAISQRLAVMLGGEITV 491 Query: 795 FSTPAKGTLIEIIFP 809 S +G++ + P Sbjct: 492 QSQQGQGSVFTLSIP 506 >gi|254227799|ref|ZP_04921230.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|151939841|gb|EDN58668.1| conserved hypothetical protein [Vibrio sp. Ex25] Length = 790 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 138/250 (55%), Gaps = 9/250 (3%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + E +++ +++ HAK+ A + KS FLA +SHEIRTPL I+G +E++ + Sbjct: 267 VEEKQRQTDEILHAKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSEL----S 322 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 E + ID S +L ++ND+LD+SKIESG++ L + E V +++ L Q A Sbjct: 323 SHQQEVVDDIDSSSQTLLTLLNDILDLSKIESGRLELSLVEADIREVVYQSMVLFQSKAT 382 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE-- 736 K++ + + A NIP R++ D +KQ+ N++SNA+ FT SG ++ +S S +E Sbjct: 383 SKQLELGINLAENIPTRVMVDDHRIKQVITNLVSNAVKFTESGHIRVDVSYDELSEKECG 442 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++ +V DTG+G+ +L +PF Q + GTGLGL + + +V G+ Sbjct: 443 VLMFKVEDTGIGIEQDKLTTIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGQLIAT 502 Query: 796 STPAKGTLIE 805 ST GT E Sbjct: 503 STKGVGTCFE 512 >gi|308275109|emb|CBX31708.1| hypothetical protein N47_E52200 [uncultured Desulfobacterium sp.] Length = 1266 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 87/252 (34%), Positives = 139/252 (55%), Gaps = 12/252 (4%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ K+ + +L AK+ AE + K +FLA +SHEIRTP+ II SE++ N+ Sbjct: 494 RDITNMKRLEKELIKAKEKAEVATGAKDEFLANMSHEIRTPMNGIIAASELLSNEDI--- 550 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + Y I S +L+I+ND+LD+SKIE+GK++L +++ + + +++ Sbjct: 551 -SDKAKHYLRIITTSAYSLLEIINDILDVSKIEAGKLDLEIRDFKIEDVIDKLVNMFFHR 609 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-- 735 ++K I + IPR L D + QI +N++SNA+ FT GG II+ N Sbjct: 610 TSKKFIELLVDIDPEIPRALRGDELRLYQILVNLVSNAVKFTKKGGIIIVGVKELENRSA 669 Query: 736 ---EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 EV LR ++DTG+G+ + +EK +PF Q S GTGLGL + K +V+ G Sbjct: 670 ESGEVKLRFFIKDTGIGIAHENIEKIFEPFSQADASTTRNYGGTGLGLCICKQLVEMMGG 729 Query: 791 KFYIFSTPAKGT 802 + + S P KG+ Sbjct: 730 EIRVESEPEKGS 741 >gi|119488052|ref|ZP_01621496.1| Periplasmic Sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] gi|119455341|gb|EAW36480.1| Periplasmic Sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] Length = 1106 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 106/399 (26%), Positives = 199/399 (49%), Gaps = 41/399 (10%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 + IL+ + I I+ I N+ K+FGY ++L + + L + + Sbjct: 496 RFAGILDNADEAIISIDETQHITLFNQGAEKIFGYSQAEVLGQALDILLPLRFVDAHHQH 555 Query: 513 LTEILS--LDLRQTLEKITL-GSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQE 567 + + L R+ E+ T+ G ++ + + I KL + Y+ + DI++ K+ Sbjct: 556 IQDFTQAPLSARKMSERNTVFGRRRDGEEFPIEASISKLELGNKRIYTAFVRDITKRKRA 615 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + +L AK A+ S KS+FLA +SHE+RTPL I+G++++++ + P+ + Sbjct: 616 EEELKRAKAAADSASRAKSEFLANMSHELRTPLNGILGYAQILQRDKN---ITPQQRKGL 672 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRI 684 I + G+ +L ++ND+LD+SKIE+ K+ LH F+ ++ VSE + ++ A +K I Sbjct: 673 GVIKQCGSHLLTLINDILDLSKIEAQKLELHPTDFDFLTFLCGVSE---ICRVRAEQKNI 729 Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTT------------- 730 + ++P+ L AD + V+Q+ +N++SNAI FT +G +I TT Sbjct: 730 SFTYQTSQHLPKSLHADEKRVRQVLINLISNAIKFTDTG--CVIFTTELIENGMAKVCDV 787 Query: 731 ----------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 + ++ V+DTG+G+ + ++EK PF Q+ + + + EGTGLGL + Sbjct: 788 GHPDQCFTPPQCATHKIRFLVQDTGIGIPSEQIEKIFIPFEQVGDRFR-KAEGTGLGLAI 846 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 + +V + S KG+ + L+++S D Sbjct: 847 TQKIVSMMGSTLNVESVVGKGSKFWVDLDLHESSEWVDA 885 >gi|332703725|ref|ZP_08423813.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553874|gb|EGJ50918.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 946 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 108/372 (29%), Positives = 184/372 (49%), Gaps = 33/372 (8%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLT 514 +++E + DGI +++ L N +++ G P + I+ + L + + Sbjct: 446 ALVENSPDGIVRYDKDLRYLYVNPCFARMTGLPAQAIVGNKLGILGLSLEMQQRVAGAVR 505 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574 E L+ Q+ E I +E KL+ +R + P S M + ++ L+ A Sbjct: 506 EALATGQEQSCE-IAWEGPREIKLIDIRFV----PEVGRDS-EMKTVLAVSRDITDLAQA 559 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K+ AE+ + KS+FLA +SHEIRTP+ IIG +E+ QR P R +Y + +S Sbjct: 560 KQEAERANRAKSEFLASMSHEIRTPMNGIIGLTELALMQR--PKAKVR--DYLGMVKQSA 615 Query: 635 NLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 + +L I+ND+LD+SKIE+G++ L F P + E + E + ++ A K I T Sbjct: 616 DSLLGIINDILDLSKIEAGRIELEKSFFSPREMLEGLFETM---RIEAERKGITFSTKID 672 Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------EVILRVRD 743 +P + D ++QI +N++SNA+ FT +G + T + E+I +RD Sbjct: 673 PRVPASLFGDEGRLRQIFVNLISNALKFTEAGSVSVQVTAEDHMDLAKPGPVEIIASIRD 732 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT- 802 TG+G+ LE +PF ++ R GTGLGL + K ++D G+ + S P KG+ Sbjct: 733 TGIGIPANRLESIFEPFDT--GTRSTRHGGTGLGLTITKGLIDLMGGRITVKSRPGKGST 790 Query: 803 -----LIEIIFP 809 ++E+ P Sbjct: 791 FSFSVMLELAIP 802 >gi|126658538|ref|ZP_01729685.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110] gi|126620125|gb|EAZ90847.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110] Length = 746 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 88/266 (33%), Positives = 150/266 (56%), Gaps = 14/266 (5%) Query: 558 MHDISEWKQE-KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KNQRF 615 M ++ + KQE +L AKK+A++ + KSDFL+ +SHE+RTPL I+G+++++ +N Sbjct: 267 MKELLQEKQEYTEQLEKAKKMADEANQAKSDFLSNISHELRTPLNGILGYAQILERNSNL 326 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 PL + I SGN +L ++NDLLD+SKIE+ K++L+ + ++ + ++ Sbjct: 327 TPLQT----DGLRIIHNSGNHLLTLINDLLDLSKIEARKLDLYPTDIDFHTFLNTVVEMI 382 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI----IISTT 730 A +K I++ N+P+ + D + ++QI LN+L N + FT G I + + Sbjct: 383 HTKARQKDIVLVYLPDPNLPKAVQVDEKRLRQILLNLLGNGVKFTDQGKVIFKVQVTPLS 442 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 T N+ + DTGVG+ LE KPF Q+ N Q R EGTGLGL ++K +++ G Sbjct: 443 LTINQTFRFEIIDTGVGINEEYLETVFKPFEQVGNVQH-RSEGTGLGLAISKQLIELMGG 501 Query: 791 KFYIFSTPAKGT--LIEIIFPLYDTS 814 + + S +G+ +I P+ T+ Sbjct: 502 ELKVESKVNQGSKFWFDIALPVIKTN 527 >gi|113969059|ref|YP_732852.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] gi|113883743|gb|ABI37795.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] Length = 1767 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/251 (33%), Positives = 140/251 (55%), Gaps = 8/251 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 ++M D++E K ++L AK+ A+ S K DFLA +SHEIRTP+ AIIG S++ Sbjct: 1011 VSMVDMTELKLLSDELLVAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTEL 1070 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + + Y I+R+ +L I+ND+LD SKIE+GK+++ P LD + + + Sbjct: 1071 ----DKKQKNYVEKIERASKSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMF 1126 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTS 733 A K++ + + A N+PR + D + Q+ +N+++NAI FT G ++ ++ Sbjct: 1127 SEKAAHKQLELLFAVAPNVPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLLSLNLVEQQ 1186 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 N++V+LR VRD+G+G+T + K K F Q S + GTGLGL + K +V+ G Sbjct: 1187 NDDVVLRFSVRDSGIGLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGT 1246 Query: 792 FYIFSTPAKGT 802 + S G+ Sbjct: 1247 IGVESQFGHGS 1257 >gi|262395842|ref|YP_003287695.1| hypothetical protein VEA_000544 [Vibrio sp. Ex25] gi|262339436|gb|ACY53230.1| hypothetical protein VEA_000544 [Vibrio sp. Ex25] Length = 828 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 138/250 (55%), Gaps = 9/250 (3%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + E +++ +++ HAK+ A + KS FLA +SHEIRTPL I+G +E++ + Sbjct: 305 VEEKQRQTDEILHAKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSEL----S 360 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 E + ID S +L ++ND+LD+SKIESG++ L + E V +++ L Q A Sbjct: 361 SHQQEVVDDIDSSSQTLLTLLNDILDLSKIESGRLELSLVEADIREVVYQSMVLFQSKAT 420 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE-- 736 K++ + + A NIP R++ D +KQ+ N++SNA+ FT SG ++ +S S +E Sbjct: 421 SKQLELGINLAENIPTRVMVDDHRIKQVITNLVSNAVKFTESGHIRVDVSYDELSEKECG 480 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++ +V DTG+G+ +L +PF Q + GTGLGL + + +V G+ Sbjct: 481 VLMFKVEDTGIGIEQDKLTTIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGQLIAT 540 Query: 796 STPAKGTLIE 805 ST GT E Sbjct: 541 STKGVGTCFE 550 >gi|163793384|ref|ZP_02187359.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159181186|gb|EDP65701.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 458 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 79/268 (29%), Positives = 144/268 (53%) Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 +I + FS T+ + E+ +L + + + HK LA +SH +RTP+ A Sbjct: 173 LIATSVSFSRQLQETLQLQGTLEDEREELDNVRADLGLAARHKWQTLAYLSHHLRTPMNA 232 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 +IGFS+++ + G LG+P+Y EYA I SG L +N +LD+++IE+G M L Sbjct: 233 VIGFSDLMARESLGKLGHPKYREYAEGIQFSGVEALRAINAILDVAEIETGTMTLSLSDE 292 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 +L V+E ++ A +++++R + + + D + ++QI ++SNAI FTP Sbjct: 293 NLCVLVAECVAEQSSNATSRKVVLRCTLPDMPASVRGDPKRLRQILDGLISNAIRFTPKK 352 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 G + +S + E ++V DTG+GM+ ++++A PF ++ N G G+ L LA+ Sbjct: 353 GSVTVSVSAEDEEWWTVQVSDTGIGMSADKVKEAFIPFVRLDNPLTQEFSGIGVSLTLAR 412 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + G+F + S +GT + + P+ Sbjct: 413 RLTTLHGGEFDLDSGTGRGTTVVVRLPV 440 >gi|77918661|ref|YP_356476.1| two component hybrid sensor histidine kinase [Pelobacter carbinolicus DSM 2380] gi|77544744|gb|ABA88306.1| Hpt sensor hybrid histidine kinase [Pelobacter carbinolicus DSM 2380] Length = 1014 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 134/238 (56%), Gaps = 8/238 (3%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L A++ AE+ S KS FL +SHEIRTP+ +IG +E++ + PL + + A+ Sbjct: 343 QELQQARQHAEEASRAKSQFLVNMSHEIRTPMNGVIGMTELLLDS---PLAEEQR-QIAD 398 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + SG +L I+ND+LD SK+E+GK+ L P + V EA L A K + + Sbjct: 399 TVAESGRALLQIINDILDFSKLEAGKLQLENIPFDICGIVEEAAGLFAAKAQTKGLELVV 458 Query: 689 SFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDT 744 A+++ P +L D ++Q+ +N+LSNA+ FT G ++ H E+ +++ +RD+ Sbjct: 459 DMADDVPPLLLGDPGRLRQVLVNLLSNALKFTKQGYVLVTLRAHHITEQSATIVVSIRDS 518 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G+ + + +PF Q S + GTGLGL + + ++ G+ ++FS P +G+ Sbjct: 519 GIGIEPQHIPQLFRPFSQADGSTTRKYGGTGLGLSICQDLIGHMGGQIHVFSQPGQGS 576 >gi|260461547|ref|ZP_05809794.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum WSM2075] gi|259032617|gb|EEW33881.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 1255 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/261 (32%), Positives = 143/261 (54%), Gaps = 21/261 (8%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K + +L A++ A KS+FLA +SHEIRTP+ ++G +E++ Sbjct: 679 DITELKMREAELREARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNL---- 734 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +P+ + + I +SGN +L I+ND+LD SKI++G++ L P +L EA+ + +LV A Sbjct: 735 DPKQKTFTDIIVKSGNALLTIINDILDFSKIDAGQLVLDPAPFNLAEAIEDVATLVSTRA 794 Query: 680 NEK--RILIRTSFANNIPRI----LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT- 732 EK +++R PR+ + D+ ++QI N+L NA+ FT G +++ T Sbjct: 795 KEKDLELIVRIE-----PRLGSLFIGDVGRIRQIVTNLLGNAVKFTDE-GHVLVDVTGER 848 Query: 733 --SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + ++ + V DTG+G+ +L+ + F Q+ S R EGTGLGL + +V+ G Sbjct: 849 MPTGTKLTISVTDTGIGIPEEKLKLVFEKFSQVDTSSTRRHEGTGLGLAITSRLVELMGG 908 Query: 791 KFYIFSTPAKGT--LIEIIFP 809 K + S KG+ E+ P Sbjct: 909 KIGVESAEGKGSTFWFEVTLP 929 >gi|288962966|ref|YP_003453260.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288915232|dbj|BAI76716.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1175 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 89/268 (33%), Positives = 144/268 (53%), Gaps = 14/268 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +DI+ ++ + +L AK+ AE+ + K++FLA VSHE+RTPL I+G ++ R Sbjct: 634 NDITASRRAREELRQAKERAERADAAKTEFLATVSHEMRTPLNGILGLCRLLLTGRLES- 692 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 G RY A I R G+ +LD VND+LD+ KIE GK+ L P +L + E ++ V+ Sbjct: 693 GERRY---AMSIMRCGHGLLDQVNDILDLRKIEDGKLELDPAPCALLPVLEEVVATVEGL 749 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTT--HT 732 ANEK I + A +P ++ D + ++QI +N++ NA+ FT GG ++ I T H+ Sbjct: 750 ANEKGIGLGLDIAPAVPALVVVDRQRLRQILVNLVGNAVKFTERGGVDLRVDIETAPEHS 809 Query: 733 SN----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + E + L VRDTG+G+ + Q ++ R G+GLGL + + ++DA Sbjct: 810 GSGMIGERLRLAVRDTGIGVPADRRAAIFEKLEQADSTIARRFGGSGLGLAIVRHLLDAM 869 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 G + S G++ + PL P Sbjct: 870 QGSIRVDSVEGLGSVFTVTIPLLRVEEP 897 >gi|186473345|ref|YP_001860687.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184195677|gb|ACC73641.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 989 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 145/249 (58%), Gaps = 6/249 (2%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + DIS K ++ + AK+ AE + K FLA +SHE+RTPL I+G+++++ QR Sbjct: 511 VIIQDISARKALEDTVRVAKEAAEAANRAKDQFLANISHELRTPLNGILGYAQML--QRD 568 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 L + R + I++SG +L ++ND+LD +++ +GK+ L VSL + +V Sbjct: 569 ARL-DARQLASVGVIEQSGQHLLTLINDILDFARLGAGKLELQVGEVSLRGFLETIAEIV 627 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 + A +KR+++ A ++P ++ D R ++Q+ LN+L+NA+ FT G++ +S + + Sbjct: 628 AVRAQQKRLVLNYVAAPDLPAVVRVDERRLRQVLLNLLANAVKFTDR-GEVTLSVSRGAA 686 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V VRDTG+G++ LE +PF Q + + R G GLGL +++ +V G+ + Sbjct: 687 GRVRFEVRDTGIGVSADRLEAIFQPFEQAGDHTR-RSGGAGLGLAISRQLVRMMGGEIEV 745 Query: 795 FSTPAKGTL 803 S+ +G++ Sbjct: 746 TSSAGEGSV 754 >gi|330504152|ref|YP_004381021.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] gi|328918438|gb|AEB59269.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] Length = 916 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 87/265 (32%), Positives = 145/265 (54%), Gaps = 22/265 (8%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK------NQRFGPL 618 K+E + A + A ES KS FLA++SHEIRTPL ++G ++++ +QRF Sbjct: 388 KEEGFQSRRAAEQAAFESQAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPMDRSQRF--- 444 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 Y + I SG+ ++ ++ND+LD ++IESGK++L L++ +SE +SL Sbjct: 445 -------YVDTISSSGSSLMAVINDILDYARIESGKLSLEQIEFDLEDMISETLSLFTGQ 497 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-- 735 A +KR+ + S N +P RI D +KQ+ +N+LSNA+ FT G + +S + S+ Sbjct: 498 ALDKRLRLYVSLENGVPRRIQGDPTRLKQVLMNLLSNALKFTAE-GHVAVSVSRRSDSHG 556 Query: 736 --EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ V D+G+G++ L + + F Q +S R G+GLGL ++K +V+ G+ Sbjct: 557 KPHLVFAVSDSGIGISEQALAQLFESFAQGDSSTTRRYGGSGLGLAISKELVEMMGGRIE 616 Query: 794 IFSTPAKGTLIEIIFPLYDTSHPHD 818 + ST +GT PL + D Sbjct: 617 VQSTLGQGTRFAFDIPLLNEQDAPD 641 >gi|254413786|ref|ZP_05027555.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196179383|gb|EDX74378.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1038 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 117/405 (28%), Positives = 198/405 (48%), Gaps = 66/405 (16%) Query: 438 VDTRINKRKMEIEVMQLC-------SILEATSDGIAIINREGIILSTNRAVSKLFGY--P 488 ++ R+N K+E ++ L SI E +GI +G +S N A+++++GY P Sbjct: 211 IELRLNVDKLERQMQALQKAENNYRSIFENAVEGIYQTTPDGHYISANPALARIYGYNSP 270 Query: 489 VEDIL---------------RKPFTVFLEQNTPSVMNHYLTEILSLD--LRQTLEKITLG 531 E I R F ++Q ++H+ ++ D L +E Sbjct: 271 AELIASVTDIGQQLYVDPSKRAEFINRMQQQ--GAVSHFEVQVYRRDRSLIWIMENARAV 328 Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH-------AKKIAEKESSH 584 + LL Y ++ DI++ KQ + L A+++AEK + Sbjct: 329 RDRNGTLLY-------------YEGSVEDITQQKQAQTALEQQNRALKDARQVAEKANKA 375 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHEIRTP+ +IG + ++ + P + R+ +A I SG+ +L I+ND+ Sbjct: 376 KSEFLAMMSHEIRTPMNGVIGMTGLLLDTELTP--DQRH--FAETIRNSGDALLTIINDI 431 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703 LD SKIESGK++L +P L + V +A+ L+ A K++ + F ++IP ++ D+ Sbjct: 432 LDFSKIESGKLDLEEQPFELRDCVEDALDLLAAKAAAKKLELGYRFDSHIPDQVRGDVTR 491 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNE------------EVILRVRDTGVGMTNY 751 V+QI +N+LSNA+ FT G+I++S T E + V DTG+G+ Sbjct: 492 VRQILVNLLSNAVKFT-EAGEIVVSVTGRKLENEADSHPDSNRYHIQFAVNDTGIGIAPQ 550 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + KPF Q+ +S + GTGLGL + K + G ++ S Sbjct: 551 RMHRLFKPFSQVDSSTSRQYGGTGLGLAICKQLSAMMGGTMWVES 595 >gi|291613628|ref|YP_003523785.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus ES-1] gi|291583740|gb|ADE11398.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus ES-1] Length = 908 Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 86/248 (34%), Positives = 139/248 (56%), Gaps = 11/248 (4%) Query: 562 SEWKQEKNKLSHAKKI---AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 SE +QE KL A++ AE S K +FLA +SHE+RTP+ A+IG S + Sbjct: 229 SELEQEIQKLKSAEEARSHAEAASHIKDEFLANMSHELRTPMNAVIGLSHLCLQTEL--- 285 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + +Y I S +L I+ND+LD+SKIE+GKM L LDE + +++ Sbjct: 286 -SDKQQDYLQKIHSSAKSLLGILNDILDVSKIEAGKMELDRIAFELDEVLGNLSTILWAK 344 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEE 736 ++EK + + A ++P +L D + Q+ +N+ NA+ FT G ++ I ++ Sbjct: 345 SHEKNLELLLETAPDVPSVLVGDPLRLGQVLINLAGNAVKFTAKGEVVVSIDLEKEEGDQ 404 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V+LR V+DTG+GM+ E++K +PF Q S + GTGLGL ++K +++ GK ++ Sbjct: 405 VVLRFAVKDTGIGMSQSEIDKLFRPFTQADTSITRKFGGTGLGLTISKRLIEMMGGKIWV 464 Query: 795 FSTPAKGT 802 STP G+ Sbjct: 465 ESTPGSGS 472 >gi|115377149|ref|ZP_01464363.1| histidine kinase PhoR1 [Stigmatella aurantiaca DW4/3-1] gi|310822860|ref|YP_003955218.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115365858|gb|EAU64879.1| histidine kinase PhoR1 [Stigmatella aurantiaca DW4/3-1] gi|309395932|gb|ADO73391.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 452 Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 105/364 (28%), Positives = 183/364 (50%), Gaps = 32/364 (8%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSV 508 E L ++L+ +GI I + EG ++ N A+ + I+ ++P + ++ Sbjct: 108 EARTLTAVLDGMVEGIWITDAEGTVIRHNDALRVMLQPGRGAIVGQRPLALIRDEALNDA 167 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQ 566 + E S L TLE + L++R+ + + LP S+ +D++E ++ Sbjct: 168 VARACREGTSSRLELTLEGLF------PLTLAIRVTPLGRDLPGSAAV---FNDVTELRR 218 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGNPRYIE 625 +N + DF+A VSHE+RTP+TAI G++E ++ P P+ +E Sbjct: 219 LENV--------------RKDFVANVSHELRTPITAIRGYAETLQTGALQDPTVAPKMVE 264 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I R + ++V DLL++S++ES +M L F VSL A S A V+ A K I Sbjct: 265 I---IHRQSERLSELVEDLLELSRLESREMKLRFADVSLAVAASRAADTVKPKAEGKNIR 321 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + +++ R D R+V+Q+ LN+L NA+ +TP+GG++ + T N ++RV+DTG Sbjct: 322 LELHVPSDL-RARGDERAVEQVLLNLLDNAVKYTPAGGRVDVRGTQ-ENGRCVVRVKDTG 379 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 VG+ L + + F ++ + GTGLGL + K ++ A G+ + S P G++ Sbjct: 380 VGIEPKHLSRIFERFYRVDKGRSRDMGGTGLGLSIVKHLLGAMEGEVKVESQPNVGSVFV 439 Query: 806 IIFP 809 I P Sbjct: 440 IFLP 443 >gi|90420581|ref|ZP_01228488.1| putative sensor histidine kinase [Aurantimonas manganoxydans SI85-9A1] gi|90335309|gb|EAS49062.1| putative sensor histidine kinase [Aurantimonas manganoxydans SI85-9A1] Length = 809 Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 120/424 (28%), Positives = 198/424 (46%), Gaps = 52/424 (12%) Query: 429 PQNGIEP--EDVDTRINKRKMEIEVMQLC-SILEATSDGIAIINREGIILSTNRAVSKLF 485 PQ G ED+ +++ +QL ++ S+ +A+ +G + +N + ++LF Sbjct: 393 PQGGATWIFEDITEKLDLESQVKATVQLQRETIDYLSEAVAVFGSDGRLRLSNPSFAELF 452 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI-TLGS------------ 532 G + +L +P H L+++ S+ +R+T+ T G+ Sbjct: 453 GLKPDYLLSRPRI------------HTLSDLASVAIRRTISSADTDGTASAVGGWPLFCQ 500 Query: 533 -------------TKEEKLLSLRII---IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576 T E L S R I I LP LT DIS+ +Q + L + Sbjct: 501 SVTAFDETRRDTETGEMILSSGRTIAFAIVPLPNGQTM-LTFSDISDARQAERMLREKNE 559 Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 E+ + K+DF+ V++E+R+PLT IIGFS ++++ GPL N R EY +YI S + Sbjct: 560 ALEQANQIKNDFVQHVNYELRSPLTNIIGFSALLRSTETGPL-NERQSEYLDYIAVSTSS 618 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 +L IVND+LD++ +++G M L V + V A ++ E + +R A Sbjct: 619 LLTIVNDILDLATVDAGIMELDLSEVDIVSTVEHAADGIRERLEEAEVTLRIDLAKAGET 678 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 +AD + QI N+LSNA +F P+G + + T + V D G G+ ++++ Sbjct: 679 FMADSHRLTQILFNLLSNAANFAPAGTAVDVVATR-GPRAISFAVTDRGPGIPADQIDRV 737 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + F P R G GLGL + K+ V+ + G I S P +GT + FPL D + P Sbjct: 738 FERFESNPAGG--RHSGAGLGLSIVKSFVELHRGTICIQSAPDEGTTVICDFPL-DPAAP 794 Query: 817 --HD 818 HD Sbjct: 795 LRHD 798 >gi|317496915|ref|ZP_07955245.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316895927|gb|EFV18079.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 462 Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/239 (34%), Positives = 137/239 (57%), Gaps = 6/239 (2%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +KL A K AE S K+ FL +SH+IRTP+ I+G +++++N+ G G P +E+ Sbjct: 182 DKLEIALKKAEDASLAKTRFLNNMSHDIRTPMNVILGHAQLMENELKGK-GMPEMLEHLE 240 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + +SGNL+L I+N++LD++KIESG+M L ++ ++ A +K I + Sbjct: 241 KLQQSGNLLLAIINNVLDMAKIESGRMELDENYCRIEAVWKSLFAVFDEKARKKNIALHY 300 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVR--D 743 + +L D+ VK+I +NILSN+I +TP GG +++ S +E +I R+R D Sbjct: 301 TMNVEHEHVLTDVTKVKEILVNILSNSIKYTPVGGSVMVDVDELSCDESGYMIERIRVSD 360 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TG+GM+ L+K + F + N+ + + GTGLG+ + K VD G + S KG+ Sbjct: 361 TGIGMSQDYLKKIFEAFTREKNTTKSKIAGTGLGMSIVKKYVDLLGGTINVESELGKGS 419 >gi|186475127|ref|YP_001856597.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184191586|gb|ACC69551.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 1485 Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 108/350 (30%), Positives = 178/350 (50%), Gaps = 33/350 (9%) Query: 484 LFGYPVEDILRKP---FTVFLEQNTPSVM-----NHYLTEILSLDLRQTLEKITLGSTKE 535 L GY ++R F + P V+ + L+E L L+ R + E Sbjct: 744 LLGYDSAALMRSAALDFGTIFADDRPGVVAALGRSAELSEPLHLEFR-------INCPAE 796 Query: 536 EKLLSLRIIIKKLP-FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 ++ + + ++ P ++ +S D S + ++L+HA+ +AE S K DFLA +SH Sbjct: 797 QRWVRAELAPRREPSGATVWSGYWVDASIERLRADELAHARDLAEAASRAKDDFLAMMSH 856 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 EIRTP+ ++G EV++ R + E I S +L I++DLLD SKIE+G+ Sbjct: 857 EIRTPMNGVLGLVEVLERTRL----DADQGEMLGMIHESAGALLQILDDLLDYSKIEAGR 912 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS----VKQIALN 710 + + EP+ L + V A+ L+ A+EK + +R P++ A LR ++QI N Sbjct: 913 LTIESEPIDLRDLVDTAVGLLAGRAHEKGLKVRVDVD---PQVAATLRGDSVRLRQILFN 969 Query: 711 ILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 +L NAI FTP G Q+ ++ + S + V + V DTG+G+ + +PF Q +S Sbjct: 970 LLGNAIKFTPQGEVDVQVQVAEQNASGQTVEITVDDTGIGIAPDVQARLFEPFVQAESST 1029 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT--LIEIIFPLYDTSH 815 R GTGLGL + + +V G ++STP +GT + ++ P+ DT H Sbjct: 1030 TRRFGGTGLGLTICRKLVALMGGTLSLYSTPGEGTRMTLRLLMPV-DTQH 1078 >gi|327538028|gb|EGF24718.1| two-component hybrid sensor and regulator [Rhodopirellula baltica WH47] Length = 953 Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 88/271 (32%), Positives = 144/271 (53%), Gaps = 26/271 (9%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y+ + D+ + K + L AK IAE + + +FLA +SHEIRTP+ AI+G ++++K+ Sbjct: 531 YTGYVIDVDDRKAFEQSLEQAKVIAENANRSRGEFLANMSHEIRTPMAAILGHADILKDH 590 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 L +P I+ I R+GN +L+I+ND+LD+SKI+SGKM L + V D ++E S Sbjct: 591 ----LKDPDNIQVVETIRRNGNFLLNIINDILDLSKIDSGKMQLETDRVRPDGLLAEVRS 646 Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII------ 726 L+ + A+EK + ++ F IP ++ D ++QI LN++ NAI FT SG I Sbjct: 647 LMDVRASEKHLPLKIEFDGPIPDLIETDAVRLRQILLNLVGNAIKFTDSGEVKILVGYDG 706 Query: 727 ---------------ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 + + +I ++ DTG+G+ + +PF Q ++ Sbjct: 707 PGKRPAEIDQSDPSKLQSPVAGTCRLIFQIVDTGIGIKPEDQASLFEPFVQADSTSTRSF 766 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GTGLGL + + + A G + ST KG+ Sbjct: 767 GGTGLGLAICRRLAHALGGDVSVESTYGKGS 797 >gi|253580705|ref|ZP_04857969.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848076|gb|EES76042.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 927 Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 138/234 (58%), Gaps = 9/234 (3%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK AEK ++ KS+FL +SH+IRTP+ A++G+SE+IK + L +P+ ++Y +++S Sbjct: 535 AKIQAEKANAAKSEFLFNMSHDIRTPMNALLGYSELIKRE----LTDPKLLDYQEKMEQS 590 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 GNL+L I+N++LD+++IESGK+ L + V + + + Q A +K I ++ + Sbjct: 591 GNLLLSIINNVLDMARIESGKVELDEDYVKIRDIYQGIYKIFQAEAEKKCIHLKMEYDVK 650 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEEVILRVR----DTGVGM 748 ++ D K+I LN++SNA+ +T SGG++ I T + + +R+R DTG+GM Sbjct: 651 HEHVICDETKNKEIFLNLISNAVKYTASGGRVTIRITELDCDRKDYVRIRTQVIDTGIGM 710 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + L + F + N+ + GTGLG+P+ K +D G + S +G+ Sbjct: 711 SEEFLPSLFEAFARERNTTDGKIAGTGLGMPIIKKYIDMMYGTIEVESKQGEGS 764 >gi|323494892|ref|ZP_08099984.1| sensory box sensor histidine kinase/response regulator [Vibrio brasiliensis LMG 20546] gi|323310856|gb|EGA64028.1| sensory box sensor histidine kinase/response regulator [Vibrio brasiliensis LMG 20546] Length = 1318 Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 106/374 (28%), Positives = 190/374 (50%), Gaps = 23/374 (6%) Query: 444 KRKMEIEVMQLCS----ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFT 498 +RK E +V++ IL AT + + ++ +G L+ N S+L G P+++I+ K P Sbjct: 459 QRKAEQKVLEQSQLNQEILNATPNPMYCLSPQGKYLTVNAKFSELCGLPMQEIIGKTPQQ 518 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT- 557 VF +Q+ + +++ L+Q + L S ++ L + +++ + F++ + Sbjct: 519 VFSQQDASQCFSETHQQLI---LQQGSKNYEL-SLLDQHLQTRDMLVCEASFNNSHGKVS 574 Query: 558 -----MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 + D++E K + +L AK+ A+ S K +FLA +SHEIRTP+ I+G + N Sbjct: 575 GIVGILLDLTERKLMETELRDAKETADAMSRAKGEFLANMSHEIRTPMNGILGMVHLALN 634 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 P + +Y I+ S +L I+ND+LD SKIE GK+N+ SLDE Sbjct: 635 TELDPAQH----KYLTRINESAKNLLGIINDILDFSKIEVGKLNIETIDFSLDEVFDNLT 690 Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTT 730 +++ L A EK+I +P ++ D + Q+ +N+ NA+ FT G ++ + Sbjct: 691 NVISLKAQEKKIEFLLDIDPQVPTGLIGDPLRIGQVLVNLCGNAVKFTEQGEVVVAVRIE 750 Query: 731 HTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + +V+L V+DTG+G+ ++ F Q +S GTGLGL ++K +V+ Sbjct: 751 LLTERDVVLHFSVKDTGIGIDKEKIAHLFDAFSQADSSITREFGGTGLGLSISKQLVELM 810 Query: 789 MGKFYIFSTPAKGT 802 G+ + ST G+ Sbjct: 811 GGQLSVSSTLGAGS 824 >gi|117923548|ref|YP_864165.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607304|gb|ABK42759.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1116 Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 106/371 (28%), Positives = 189/371 (50%), Gaps = 24/371 (6%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L S+++ D I + + EG+ L+ N A + G + I K F++Q + Sbjct: 602 LQSLVQNLPDLIWMKDPEGVFLTCNPAFERFVGSQEQQIKGKTDYDFVDQKLADFFR--M 659 Query: 514 TEILSLDLRQTL---EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM------HDISEW 564 ++L+++ + E +T + + LL K P + HDI+ Sbjct: 660 NDLLAIEKGGPVINQEWVTFAADGHKALLE----TTKTPMFDKQGRIIGVLGVAHDITAT 715 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 KQ + L HAK+ AE KS+FLA +SHEIRTP+ IIG S+++ P+ + + Sbjct: 716 KQAEQDLIHAKEKAEAAYQAKSEFLATMSHEIRTPMNVIIGLSDILMET---PIDHEQR- 771 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK-- 682 ++ + ++ +LD+V+ +LD+S+IE+ +++L EP++L V E +S++ + A++K Sbjct: 772 DHLLRLQKANKTLLDLVDSILDLSRIEANQISLKQEPLNLALMVEETMSMMSIVADQKGL 831 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VIL 739 R+ + + A + L D ++QI +N++ NA+ FT G + T E V L Sbjct: 832 RLESQVTQATDDYWSLGDESRIRQILVNLIGNAVKFTEKGSIWVTLELFTDTLERTLVRL 891 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V+DTG+G+ LE F Q+ +S R GTGLGL + + ++ GK ++ S P+ Sbjct: 892 CVKDTGIGIGPEHLETIFDKFTQVDSSYARRYSGTGLGLAITRRIIQLMGGKVWVESNPS 951 Query: 800 KGTLIEIIFPL 810 +G+L + P Sbjct: 952 QGSLFCVELPF 962 >gi|281355046|ref|ZP_06241540.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] gi|281317926|gb|EFB01946.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] Length = 1559 Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 80/254 (31%), Positives = 143/254 (56%), Gaps = 11/254 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I++ Q + KL+ + A+ KS FLA +SHE+RTPL A+IGFSE++++ GP+ Sbjct: 1148 EITQLNQRQKKLTETMEAAQAADRAKSYFLATMSHELRTPLNAVIGFSELLQS---GPMP 1204 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + I+ +G +L+++ND+LD+SK+E+GKM++ E + E + ++ A Sbjct: 1205 DQEQQNALRAINVAGATLLELINDILDLSKLEAGKMDIIPELLDPQEFLQTVSAIFTHTA 1264 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 +++ + + +P + D + ++Q+ +N+L NA FT +GG ++ + T N+ Sbjct: 1265 RTRKLSLTVTVPPAMPHLKFDRKRLRQVLVNLLGNAFKFTETGGVLLEAAFETVNDHFGT 1324 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG-EGTGLGLPLAKAMVDANMGKFYIF 795 +IL+V DTG+GM+ + + PF Q R EGTGLGL +++ +V G + Sbjct: 1325 LILKVSDTGIGMSPETVRQLFDPFRQ----HHTRDYEGTGLGLAISQRLVARMGGSIEVT 1380 Query: 796 STPAKGTLIEIIFP 809 S P G+ I+ P Sbjct: 1381 SEPEHGSTFRIVLP 1394 >gi|332706978|ref|ZP_08427038.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332354243|gb|EGJ33723.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 779 Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 132/232 (56%), Gaps = 8/232 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY-IE----YANYIDRSGNLVLD 639 KS+FLA +SHE+RTPLT +IG + + FG + R +E Y I +G +L+ Sbjct: 401 KSEFLATMSHELRTPLTCVIGMAATLLRWCFGQDSSQRLPVEKQQRYLKTIQENGQHLLE 460 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--I 697 ++ND+LD+S++E+GK+ L SL + ++ +S + A ++++ ++ + R Sbjct: 461 LINDILDLSQVEAGKLVLTISKFSLSKLANQLLSSLNEQAYQQQVTLQLDWRVPPERDCF 520 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 AD R VKQI N+LSN I FTP GG++I+ N V+ +V DTG+G+ +L Sbjct: 521 SADQRRVKQILFNLLSNGIKFTPEGGKVILRV-WPENHLVVFQVEDTGIGIAQDQLPLLF 579 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q+ + + EGTGLGL L K +++ + GK + S A+G+ + P Sbjct: 580 QKFQQLETPYRRKYEGTGLGLALTKQLIELHRGKIEVESVVAEGSCFTVWLP 631 >gi|330508806|ref|YP_004385234.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] gi|328929614|gb|AEB69416.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] Length = 1026 Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 103/380 (27%), Positives = 195/380 (51%), Gaps = 33/380 (8%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK---PFTV-FLEQNTPSV 508 +L I+E D ++++ G ++S NRA+ K+ G E IL K +++ F + P++ Sbjct: 491 RLADIIEFLPDATFVVDKNGKVISWNRAIEKITGVKAELILGKGDYEYSLPFYGERRPTL 550 Query: 509 MNHYLTEILSLDLRQTLEKI--TLGSTKEEKLLSLRIIIKKLPFSSCYSL---------- 556 ++ + + + + EK L +E LL + Y L Sbjct: 551 ID--MAKGIDPKIDPEFEKKYENLKRDEENNLLVGEAYMPLQGKGDAYLLGSASALYDSN 608 Query: 557 --------TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 ++ DI++ K+ + +L +K++AE + KS+FLA +SHEIRTP+ A+IG +E Sbjct: 609 GDYWGAIESIRDITDRKRVEEELQRSKEMAESATRAKSEFLANMSHEIRTPMNAVIGLTE 668 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++ +++ L + + E I SG+ +L I+N++LD++KIE+ L P+ + + Sbjct: 669 LLMDEKDEKLTSAQR-ECVEMIRISGDTLLSIINNILDLTKIEANMTELEHRPIDVKGCI 727 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII 727 ++ LV +KRI N+P+ I+ D + QI +N+L+NA+ FT G+I + Sbjct: 728 ESSMDLVSGSVGDKRIKFSYKIEENVPQFIMGDPTRLCQILINLLNNAVKFTEQ-GEIAV 786 Query: 728 STTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 S ++T E+ V+DTG+G+ ++ + + F Q+ S + GTGLGL ++K Sbjct: 787 SVSNTNLDDGGYEIHFAVKDTGIGIPEDKMSRLFRSFSQVDASTARKYGGTGLGLAISKK 846 Query: 784 MVDANMGKFYIFSTPAKGTL 803 + + G+ ++ S G++ Sbjct: 847 LTEMMNGRMWVESAVGVGSV 866 >gi|153832421|ref|ZP_01985088.1| sensory transduction protein kinase [Vibrio harveyi HY01] gi|148871450|gb|EDL70313.1| sensory transduction protein kinase [Vibrio harveyi HY01] Length = 1000 Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 102/304 (33%), Positives = 159/304 (52%), Gaps = 20/304 (6%) Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS-EWKQEKNKLSHAKKIA 578 +L+ LE + S EE LR +IK S ++ + +S E +Q K KL+ AK+ A Sbjct: 271 NLQLVLEFLRRDSYSEES--PLRELIKGKDELSKFAQEVERLSYEREQAKVKLTQAKEDA 328 Query: 579 E-------KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 E K S KS FLA +SHEIRTPL +IG SEV+ + +Y I+ Sbjct: 329 EQAKDDAIKASKAKSSFLANMSHEIRTPLNGVIGISEVLSDTSLTATQK----DYVGTIE 384 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 S L+L ++ND+LD SKIESG + + + E++ + S+V A EK I ++ S + Sbjct: 385 TSSQLLLSLINDILDFSKIESGMLLISPHSTCVRESIYDIASIVSPKAKEKGIDLKVSIS 444 Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVILRVRDTGVG 747 N P R++ D ++Q+ +N +SNA+ FT G + TTH +N + V+D+G+G Sbjct: 445 RNTPYRLMIDDHRLRQVIMNFMSNAVKFTEKGSVHLSVTTHGVSGANAVMEFSVQDSGIG 504 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + + +PF Q NS + GTGLGL ++ +V+ GK + S G+ Sbjct: 505 IDEQQQKNIFEPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGKIQLESEKGHGS--RFF 562 Query: 808 FPLY 811 F +Y Sbjct: 563 FQIY 566 >gi|297578936|ref|ZP_06940864.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae RC385] gi|297536530|gb|EFH75363.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae RC385] Length = 1331 Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 145/251 (57%), Gaps = 10/251 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K+ +++L AK+ A+ S K DFLA +SHEIRTP+ AI+G + + N PL Sbjct: 582 DMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---PLD 638 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + +Y + I+ S +L I+ND+LD SK+E+GK+N+ +LD+ + ++V L A Sbjct: 639 TTQR-KYVSRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKA 697 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS--TTHTSNEE 736 EK I +IP ++ D + Q+ +N+ NA+ FT S G+I++S + + ++ Sbjct: 698 QEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQ 756 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V LR V+DTG+G+ +L+ F Q NS + GTGLGL ++K +V+ G+ + Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 816 Query: 795 FSTPAKGTLIE 805 S KG+ E Sbjct: 817 HSEEGKGSTFE 827 >gi|71909483|ref|YP_287070.1| PAS [Dechloromonas aromatica RCB] gi|71849104|gb|AAZ48600.1| PAS protein [Dechloromonas aromatica RCB] Length = 853 Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 106/371 (28%), Positives = 186/371 (50%), Gaps = 26/371 (7%) Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 +++ Q ++ GI ++ +G + NR + + GY V++++R + P + Sbjct: 337 VQLEQTIFAMDRVGIGIHWVDTQGYFIYVNRVAAAMLGYSVDEMMR--------LSVPDI 388 Query: 509 MNHYLTEILSL---DLRQTLEKITLGST---KEEKLLSLRIIIKKLPFSSC----YSLTM 558 + E +RQ +++L + ++ ++ + I I P ++ Y + Sbjct: 389 HPDFTIEGFGAATEKIRQA-GRVSLDAQHRHRDGHMVPVSINIYYRPETAQEPARYITFV 447 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DISE K+ + +L AK++AE+ + KS FLA +SHEIRTP+ AI+G + +++ L Sbjct: 448 SDISERKRAEQELREAKELAEQATKAKSAFLANMSHEIRTPMNAILGSTYLMRRG----L 503 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + E I+ SG +L I++D+LD+SKIE+GK+ L P+ L + + E +++ Sbjct: 504 TDAALNEPLERIEASGKHLLSIIDDILDLSKIEAGKLVLEEAPLMLPQLLGEVAEMLRGR 563 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A EK + +R A +L D ++Q +N +NAI FT G + S N+E I Sbjct: 564 AQEKNLAVRVESAGWPLNVLGDATRLRQALINYANNAIKFTDHGAITLRSRVIEENDESI 623 Query: 739 ---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 L V DTG+G++ L + PF Q +S + GTGLGL + + + G Sbjct: 624 LVRLEVEDTGIGISPEALGRLFTPFEQADSSTTRKYGGTGLGLAITRHLAILMGGAAGAE 683 Query: 796 STPAKGTLIEI 806 S+ KG+L I Sbjct: 684 SSLGKGSLFWI 694 >gi|229529572|ref|ZP_04418962.1| hypothetical protein VCG_002667 [Vibrio cholerae 12129(1)] gi|229333346|gb|EEN98832.1| hypothetical protein VCG_002667 [Vibrio cholerae 12129(1)] Length = 1342 Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 144/251 (57%), Gaps = 10/251 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K+ +++L AK+ A+ S K DFLA +SHEIRTP+ AI+G + + N PL Sbjct: 593 DMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---PLD 649 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + +Y I+ S +L I+ND+LD SK+E+GK+N+ +LD+ + ++V L A Sbjct: 650 TTQR-KYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKA 708 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS--TTHTSNEE 736 EK I +IP ++ D + Q+ +N+ NA+ FT S G+I++S + + ++ Sbjct: 709 QEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQ 767 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V LR V+DTG+G+ +L+ F Q NS + GTGLGL ++K +V+ G+ + Sbjct: 768 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 827 Query: 795 FSTPAKGTLIE 805 S KG+ E Sbjct: 828 HSEEGKGSTFE 838 >gi|269960026|ref|ZP_06174403.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835325|gb|EEZ89407.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 1187 Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 88/246 (35%), Positives = 131/246 (53%), Gaps = 12/246 (4%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A+ AE + KS FLA +SHEIRTP+ AIIG S ++ N Y + Sbjct: 469 LQEARDDAESANQAKSSFLANMSHEIRTPMNAIIGMSHLVLESEL----NKHQKNYIEKV 524 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 RS +L ++ND+LD SK+E+GK+ L P SLDE + +AI ++ + + +K + + S Sbjct: 525 HRSAKSLLRLLNDILDFSKVEAGKLELERTPFSLDELLDQAIDILSVKSQDKSLDLLLSV 584 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHTSNEEVILRVRDT 744 N+P+ ++ D VKQI LN+ NAI FT G ++ T S E++ V D Sbjct: 585 DQNLPQTLIGDPYRVKQIILNLGFNAIKFTHQGKVTLRLNLLHKTKQYSTLELV--VEDE 642 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+GMT +L K F Q S + G+GLGL + K ++D G + ST KG+ Sbjct: 643 GIGMTPGQLNKLFNSFSQADTSTTRKYGGSGLGLAITKNIIDLMKGTISVTSTLGKGSTF 702 Query: 805 EIIFPL 810 ++ F L Sbjct: 703 KVQFEL 708 >gi|209883557|ref|YP_002287414.1| MmoS [Oligotropha carboxidovorans OM5] gi|209871753|gb|ACI91549.1| MmoS [Oligotropha carboxidovorans OM5] Length = 740 Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 84/261 (32%), Positives = 135/261 (51%), Gaps = 7/261 (2%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D+++ + ++ L A+ A + KS FLA SHEIRTPL I+G S ++ + + Sbjct: 208 RDVTDRAESEHALGLARDHAVSANRAKSKFLAVASHEIRTPLNGILGMSNLLLDTQL--- 264 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 NP YA + SG ++ +V +LLD SKIE+GK++L P L + E L+ Sbjct: 265 -NPEQAAYAKAVKDSGEALVSLVEELLDFSKIEAGKIDLEHRPFHLGAMIEEITELLAPR 323 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A ++I I + +PR ++ D ++Q+ LN+ SNA+ FT GG +I+ E+ Sbjct: 324 AQARQIEIASYVDERLPREVIGDAARLRQVLLNLASNAVKFTAEGGVALIAEPGIWPNEI 383 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 +RDTG+G+ ++ + F Q GTGLGL +++ +V G+ + S Sbjct: 384 SFLIRDTGIGIAPDAQQRIFREFEQAGEEIAREYGGTGLGLAISERIVRRMGGRIALESA 443 Query: 798 PAKGTLIEIIFPL--YDTSHP 816 +GT E+ PL DTS P Sbjct: 444 IGRGTTFEVSIPLEAADTSAP 464 >gi|117921856|ref|YP_871048.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3] gi|117614188|gb|ABK49642.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3] Length = 1767 Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 85/251 (33%), Positives = 140/251 (55%), Gaps = 8/251 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 ++M D++E K ++L AK+ A+ S K DFLA +SHEIRTP+ AIIG S++ Sbjct: 1011 VSMVDMTELKLLSDELLVAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTAL 1070 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + + Y I+R+ +L I+ND+LD SKIE+GK+++ P LD + + + Sbjct: 1071 ----DKKQKNYVEKIERASKSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMF 1126 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTS 733 A K++ + + A N+PR + D + Q+ +N+++NAI FT G ++ ++ Sbjct: 1127 SEKAAHKQLELLFAVAPNVPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLLSLNLVEQQ 1186 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 N++V+LR VRD+G+G+T + K K F Q S + GTGLGL + K +V+ G Sbjct: 1187 NDDVVLRFSVRDSGIGLTADQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGT 1246 Query: 792 FYIFSTPAKGT 802 + S G+ Sbjct: 1247 IGVESQFGHGS 1257 >gi|121728768|ref|ZP_01681782.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V52] gi|121628945|gb|EAX61398.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V52] Length = 1113 Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 144/251 (57%), Gaps = 10/251 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K+ +++L AK+ A+ S K DFLA +SHEIRTP+ AI+G + + N PL Sbjct: 364 DMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---PLD 420 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + +Y I+ S +L I+ND+LD SK+E+GK+N+ +LD+ + ++V L A Sbjct: 421 TTQR-KYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKA 479 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS--TTHTSNEE 736 EK I +IP ++ D + Q+ +N+ NA+ FT S G+I++S + + ++ Sbjct: 480 QEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQ 538 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V LR V+DTG+G+ +L+ F Q NS + GTGLGL ++K +V+ G+ + Sbjct: 539 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 598 Query: 795 FSTPAKGTLIE 805 S KG+ E Sbjct: 599 HSEEGKGSTFE 609 >gi|114564282|ref|YP_751796.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] gi|114335575|gb|ABI72957.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] Length = 752 Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 136/252 (53%), Gaps = 6/252 (2%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H +E KL+ + AE S KSDF+A +SHE+RTPL AI+G +++ + + L Sbjct: 214 HMATEVASNHQKLNTLRIQAESASKAKSDFMASMSHELRTPLNAILGLAQLYE---YDVL 270 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N + A I R+G +L ++ND+LD++ IESG M F+ S+ V E+++LV Sbjct: 271 ANKVQKDNAKSIYRAGEHLLLLINDVLDLTAIESGNMQFSFDYASIKRVVEESVALVSEL 330 Query: 679 ANEKRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 + + I T N + + D R KQ+ LN+LSNAI + G I IS + +SN + Sbjct: 331 VKAQSMTIHTEGFNELEGLCFYIDERRFKQVMLNLLSNAIKYNKPHGDIFISCSVSSNNQ 390 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + V DTG G ++ + KPF ++ ++ GTG+GL + + +V+ G+ + S Sbjct: 391 CTINVADTGYGFAADDVSRLFKPFDRL-GAETSNINGTGIGLVITRELVERMQGEIRVQS 449 Query: 797 TPAKGTLIEIIF 808 KG+ +IF Sbjct: 450 ELNKGSCFSLIF 461 >gi|291568899|dbj|BAI91171.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 953 Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 87/266 (32%), Positives = 147/266 (55%), Gaps = 11/266 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DISE K + +L ++ + K +FLA +SHE+RTPL I+G SE +K G L Sbjct: 545 DISERKLMEIELQKTVAELDRATRLKDEFLANMSHELRTPLNGILGMSEALKEGILGALN 604 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + ++ A I++SG +L++++D+LDISKIE+GK+ L+ V + E + +++LV A Sbjct: 605 SNQHHAIA-MIEKSGKHLLELISDILDISKIEAGKLELYLTEVRVQELCTSSLTLVNHLA 663 Query: 680 NEKRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIIST-------- 729 K+I I + + + L D R ++Q+ +N+LSNA+ FT G+I ++ Sbjct: 664 FTKQINIEINIPQALEKTLIKVDNRRLRQVLINLLSNALKFTHKSGKINLNVGIKTSPNA 723 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 ++ + + V D G+G+ +L K PF QI +S + GTGLGL L K +++ + Sbjct: 724 AISTPQSIYFSVIDNGIGIAPDDLNKLFLPFTQIDSSLNRQYSGTGLGLALVKQIIELHG 783 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSH 815 G + S KG+ + P + TS+ Sbjct: 784 GCVEVSSQLGKGSCFTVYLPYHKTSN 809 >gi|262171619|ref|ZP_06039297.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451] gi|261892695|gb|EEY38681.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451] Length = 1325 Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 108/376 (28%), Positives = 184/376 (48%), Gaps = 20/376 (5%) Query: 441 RINKRKMEIEVMQLCS-ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 R+ +RK+ +E QL IL+AT + + ++ G L+ N +L G D++ KP Sbjct: 461 RLAERKV-LEQSQLNQEILDATPNPMYCLSANGTFLTVNAKFLELMGLYNNDVIGKP--- 516 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQT------LEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 ++ PS + + + +Q + I + E L+ + + Sbjct: 517 -PQEIFPSSVAERFAQAHQILTQQQSSQNYEISLIDYAGVQREMLVYEASFSDRADKVNG 575 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + D++E K+ + +L AK A+ S K DFLA +SHEIRTP+ AI+G + + N Sbjct: 576 IVGILLDMTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT 635 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + + +Y I+ S +L I+ND+LD SKIE+GK+N+ SLD+ + + Sbjct: 636 QL----DATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTA 691 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 ++ L A EK I +IP ++ D + Q+ +N+ NA+ FT G +I + Sbjct: 692 VISLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISARVRQ 751 Query: 733 SNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 NE+ ++ V+DTG+G+ +L F Q NS + GTGLGL ++K +V+ Sbjct: 752 LNEQQVMLLFAVKDTGIGIAQEKLNDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMG 811 Query: 790 GKFYIFSTPAKGTLIE 805 G+ + S KG+ E Sbjct: 812 GQISVHSEEGKGSTFE 827 >gi|30248080|ref|NP_840150.1| sensory transduction histidine kinase [Nitrosomonas europaea ATCC 19718] gi|30179965|emb|CAD83960.1| Sensory transduction histidine kinases [Nitrosomonas europaea ATCC 19718] Length = 1229 Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 113/441 (25%), Positives = 194/441 (43%), Gaps = 49/441 (11%) Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM---------QLC 455 W+ LA F N E + I ++ R+ +R +E + + Sbjct: 369 WDEIGQLASAF------NMMTERLD---ISYRHLEARVAERTARLEQLNAELAIKEEETR 419 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S++E D + + G++LS N + KLFGY VE+ + + V + + + +Y+ Sbjct: 420 SVVEHMVDCVVTTDERGVMLSVNPVMEKLFGYTVEEAIGQNVAVLVPKPDRDMHEYYMQR 479 Query: 516 ILSLDLRQT--------------LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MH 559 Q L + G K+ LL + + + + T M Sbjct: 480 YCHTGYGQQYVGRPQQPGGHHVGLGREVEGVHKDGTLLPVYLAVSEYFVGDKRHFTGIMR 539 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+ E + + L A++ AE + KS FLA +SHEIRTP+ +IG +V+ Sbjct: 540 DMREHVKIRQDLEQARRDAELANQAKSAFLAAMSHEIRTPMNGVIGMIDVLSQTSLSSYQ 599 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 E + I S ++L+I+ D+LD SKIE+G++ + P+SL++ V A + A Sbjct: 600 K----EMTDLIRESAFVLLEIIEDILDFSKIEAGRLEIEQRPISLEKVVERACGTLTHMA 655 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG----GQIIISTTHTSN 734 K + + +P+ + D ++QI +N+++NAI F+ SG G +I+ Sbjct: 656 ASKEVELILFVDPALPKNVAGDALRLRQILINLINNAIKFS-SGMSRPGCVIVKAVPADR 714 Query: 735 EE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 V+ +V D G+GM + E+ PF Q S R GTGLGL + + +V+ Sbjct: 715 ANGDVVTVLFQVIDNGIGMDDATRERLFTPFSQGDTSTTRRFGGTGLGLTICRRLVELMK 774 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G + S P KG+ + P Sbjct: 775 GDITVESQPGKGSTFKARIPF 795 >gi|229523546|ref|ZP_04412951.1| hypothetical protein VCA_001112 [Vibrio cholerae bv. albensis VL426] gi|229337127|gb|EEO02144.1| hypothetical protein VCA_001112 [Vibrio cholerae bv. albensis VL426] Length = 1342 Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 144/251 (57%), Gaps = 10/251 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K+ +++L AK+ A+ S K DFLA +SHEIRTP+ AI+G + + N PL Sbjct: 593 DMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---PLD 649 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + +Y I+ S +L I+ND+LD SK+E+GK+N+ +LD+ + ++V L A Sbjct: 650 TTQR-KYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKA 708 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS--TTHTSNEE 736 EK I +IP ++ D + Q+ +N+ NA+ FT S G+I++S + + ++ Sbjct: 709 QEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQ 767 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V LR V+DTG+G+ +L+ F Q NS + GTGLGL ++K +V+ G+ + Sbjct: 768 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 827 Query: 795 FSTPAKGTLIE 805 S KG+ E Sbjct: 828 HSEEGKGSTFE 838 >gi|197124838|ref|YP_002136789.1| histidine kinase [Anaeromyxobacter sp. K] gi|196174687|gb|ACG75660.1| histidine kinase [Anaeromyxobacter sp. K] Length = 461 Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/254 (32%), Positives = 136/254 (53%), Gaps = 2/254 (0%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + + KL + ++ KS+FLA +SHE+RTPLT++IG+SE++ GPL + Sbjct: 197 ELQDKNQKLEDSYAKLKELDRLKSNFLATMSHELRTPLTSVIGYSEMMLEGLGGPLTAEQ 256 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 EY I G +L ++ +LDISKIE+G++ L V + + +A++ + A +K Sbjct: 257 R-EYLGIIMEKGENLLQLITSILDISKIEAGRVRLVLSEVDAVQLMRDAVATLLPIARKK 315 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + + +PRI AD ++Q +N+ SNA+ FTP GG I +S E + + V Sbjct: 316 GLKVSCD-TTPLPRIHADRDKLRQCLVNLCSNAVKFTPPGGSITVSAEVLPAERLAIHVV 374 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D+G+G+ L K F Q+ S G GLGL + K+ V+A+ G+ + S G+ Sbjct: 375 DSGIGIPEEHLGKVFDVFYQVDGSSTREYGGAGLGLAIVKSFVEAHGGEIRVRSAAGTGS 434 Query: 803 LIEIIFPLYDTSHP 816 + ++ P+ T P Sbjct: 435 VFTVLLPIRATPAP 448 >gi|189423637|ref|YP_001950814.1| chemotaxis protein CheR [Geobacter lovleyi SZ] gi|189419896|gb|ACD94294.1| MCP methyltransferase, CheR-type with PAS/PAC sensor [Geobacter lovleyi SZ] Length = 1193 Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 98/366 (26%), Positives = 183/366 (50%), Gaps = 21/366 (5%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 + +E + G + + + + N A+ + GY E++L + F++ S+ + + Sbjct: 681 AFIENSGQGFWQLGPDRLTIDLNPALCSMLGYRREEMLGRSPLEFVDAENRSIFLYQMGR 740 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSL------RIIIKKLPFSSCYSLTMHDISEWKQEKN 569 I + R +ITL + + R + K+ + + + D+SE K+ + Sbjct: 741 IDGTEHRNY--EITLLHKDGHPVPVMFSATTHRTVEGKVDSAFAF---ITDLSEQKRVEQ 795 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 ++ AK+ AE + K+ FLA +SHE+RTPL I+G S ++ PL + + +Y + Sbjct: 796 EIRAAKEAAESANRAKTQFLANISHEVRTPLNGIMGMSHLLH---MTPLADEQQ-DYLRH 851 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 +D S +L ++NDLLD+++IESG LD+ + + + Q A K +L++ Sbjct: 852 LDDSAQSLLSVINDLLDLTRIESGGFGTEQADFQLDQLARDILRIHQPVAQRKGVLLQLE 911 Query: 690 FANNIPRILADL-RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR----DT 744 A+ +P +L + +KQ+ N++ NA+ FT G++++S + LRVR D+ Sbjct: 912 LADGMPGLLRGVPLRLKQVLHNLVGNAVKFTDQ-GRVVLSISPIIVPGQSLRVRFAVCDS 970 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+GM +++ PF Q S R GTGLGL + + + + G + STP +G+ Sbjct: 971 GIGMEPETIKRIFDPFSQADESISRRYGGTGLGLTICRRLTELMGGTIEVESTPGQGSCF 1030 Query: 805 EIIFPL 810 +I P+ Sbjct: 1031 TVILPM 1036 >gi|254225353|ref|ZP_04918965.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V51] gi|125622194|gb|EAZ50516.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V51] Length = 1331 Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 144/251 (57%), Gaps = 10/251 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K+ +++L AK+ A+ S K DFLA +SHEIRTP+ AI+G + + N PL Sbjct: 582 DMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---PLD 638 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + +Y I+ S +L I+ND+LD SK+E+GK+N+ +LD+ + ++V L A Sbjct: 639 TTQR-KYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKA 697 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS--TTHTSNEE 736 EK I +IP ++ D + Q+ +N+ NA+ FT S G+I++S + + ++ Sbjct: 698 QEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQ 756 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V LR V+DTG+G+ +L+ F Q NS + GTGLGL ++K +V+ G+ + Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 816 Query: 795 FSTPAKGTLIE 805 S KG+ E Sbjct: 817 HSEEGKGSTFE 827 >gi|262192397|ref|ZP_06050550.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae CT 5369-93] gi|262031750|gb|EEY50335.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae CT 5369-93] Length = 1331 Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 144/251 (57%), Gaps = 10/251 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K+ +++L AK+ A+ S K DFLA +SHEIRTP+ AI+G + + N PL Sbjct: 582 DMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---PLD 638 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + +Y I+ S +L I+ND+LD SK+E+GK+N+ +LD+ + ++V L A Sbjct: 639 TTQR-KYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKA 697 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS--TTHTSNEE 736 EK I +IP ++ D + Q+ +N+ NA+ FT S G+I++S + + ++ Sbjct: 698 QEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQ 756 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V LR V+DTG+G+ +L+ F Q NS + GTGLGL ++K +V+ G+ + Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 816 Query: 795 FSTPAKGTLIE 805 S KG+ E Sbjct: 817 HSEEGKGSTFE 827 >gi|119485363|ref|ZP_01619691.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] gi|119457119|gb|EAW38245.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] Length = 402 Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 83/247 (33%), Positives = 142/247 (57%), Gaps = 3/247 (1%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q K +K+AE S KS FLA +SHE+RTP+ AI+GFS+++ Q PL P+ + Sbjct: 155 RQRKQIERQNRKLAEA-SRLKSQFLATMSHELRTPMNAIMGFSQLLLRQYPDPLV-PQQL 212 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I + +L ++N++LD SKIE+G L +L + V ++ A EK++ Sbjct: 213 DMVQRIFNNAQHLLTMLNEVLDFSKIEAGHFQLEPTEFNLAQFVELTTQELRSLAVEKQL 272 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + + P I+ D S++Q+ +N++SNAI FT SGG + I+ +N+++I+ V+DT Sbjct: 273 TLEVNINLEEPMIINDQNSIRQVLVNLISNAIKFTDSGG-VWINVQEQANDQLIIAVKDT 331 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 GVG+ + L++ + F QI + + GTGLGL + ++V G+ + S G++ Sbjct: 332 GVGIASDHLQEIFEAFRQINQTNTRKHYGTGLGLAIVDSLVKLMHGQVTVESQLGCGSIF 391 Query: 805 EIIFPLY 811 ++ FP Y Sbjct: 392 QVEFPRY 398 >gi|119487282|ref|ZP_01621033.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] gi|119455837|gb|EAW36972.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] Length = 1259 Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 93/262 (35%), Positives = 142/262 (54%), Gaps = 16/262 (6%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS+ K + +L AK+ AE + KS FLA +SHE+R+PL AI+GF++VI Sbjct: 757 DISDRKAAETELVKAKEAAEVANQAKSIFLANMSHELRSPLNAILGFTQVINGSSNLTTQ 816 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + N I RSG +L ++N++LD+SKIE+GK+ L EP L + + E L ++ A Sbjct: 817 QQNNL---NIIQRSGEHLLGLINEILDLSKIEAGKIILIQEPFDLWKLIEELQDLFRIKA 873 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-----------GQIII 727 ++K + + N+PR I D ++QI +N+LSNAI FT G + + Sbjct: 874 SQKNLKLTVIINPNLPRYIQTDRVKLRQILINLLSNAIKFTQKGTVCLEADLSETSPVCL 933 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 T T ++ RV DTGVG+ E++ PF Q + Q + +GTGLGL + K + Sbjct: 934 IGTETLPVQLHFRVSDTGVGIEPDEIDNLFSPFVQTQSGIQSQ-QGTGLGLAICKGYIKL 992 Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809 GK + S P GT+ ++ P Sbjct: 993 FGGKIEVHSQPRVGTVFDLEMP 1014 >gi|327538030|gb|EGF24720.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47] Length = 1122 Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 84/256 (32%), Positives = 149/256 (58%), Gaps = 14/256 (5%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + + +L A+ +AE S KS F+A +SHEIRTP+TAI+G+++++++ + +P+ Sbjct: 702 ERAESQLELEQARAVAEAASQSKSAFVANMSHEIRTPMTAILGYADLVRDM----IEDPQ 757 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYA 679 IE+ I R+G+ +L+I+ND+LD+SKIE+GK+ ++ FEP L E V S++++ A Sbjct: 758 AIEHLETIRRNGDYLLEIINDILDLSKIEAGKLEVNHEKFEPARLIEDVR---SIMEVRA 814 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 E + + + +P+ I +D + +KQI +N++ NAI FT G + N+ + Sbjct: 815 KEGGLSLDVQYIGLLPKTIESDGKRLKQILINLVGNAIKFTQKG---WVQIRVRFNKWLH 871 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + + DTG+GM++ + ++ KPF Q S GTGLGL ++K + + G ST Sbjct: 872 IDIVDTGIGMSDEQQKRLFKPFSQGDASVTRTFGGTGLGLAISKRLTEMLGGTIIASSTE 931 Query: 799 AKGTLIEIIFPLYDTS 814 G+ + + D + Sbjct: 932 GVGSTFTVSVAVGDLA 947 >gi|170726058|ref|YP_001760084.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169811405|gb|ACA85989.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 1168 Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 103/358 (28%), Positives = 179/358 (50%), Gaps = 13/358 (3%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT-VFLEQNTPSVMNHY 512 L + LEA+ D + I+ G I N A S+LFG+ E ++ + V + Sbjct: 368 LLATLEASQDALITIDIAGKIQEFNEAASQLFGHDKESVIGEQLAEVIFTDIEKACFKEG 427 Query: 513 LTEILSLD----LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568 L E +++++E +++ + L++I +L + +HDIS+ + + Sbjct: 428 LEEFRQTGDGPAIKKSIELMSMKLDGSTLPIELKMIPVQLGDDIFLTAFIHDISKRMEYE 487 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L +AK+ AE S KS FLA +SHEIR+PL A++G E++ + N YA Sbjct: 488 LQLKNAKEEAESGSKAKSRFLATMSHEIRSPLNAVLGSVELLLDSML----NKEQRLYAQ 543 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 +G +L +ND+LD SKIE+G+M L E S + VS+ + ++ A EK + + T Sbjct: 544 TAREAGTALLSTINDILDFSKIEAGQMALETESFSPAKLVSQVMQILAPKAAEKGVNLAT 603 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDT 744 N+P I+ D + ++Q+ N++ NAI F+ SG ++ I +H ++ V D Sbjct: 604 FINRNVPEIVKGDAQRLRQVLHNLVDNAIKFSDSGCISVEMWIPDSHHQEVQLYCTVTDE 663 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G++ EK + F Q+ + +GTGLGL + ++ GK + S G+ Sbjct: 664 GIGVSLSAQEKLFQEFSQVHDQHNTSYKGTGLGLAICSELITMMGGKIELSSRLGHGS 721 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 16/90 (17%) Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 N+ E + E E +TR+N +IL A DG II+ G+I N A+ Sbjct: 220 NRMIEKVEGKAKELEGANTRLN------------TILSAAVDGFIIIDVYGVITQVNPAI 267 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 +LFGY ++I+ K ++F+ PS H Sbjct: 268 CRLFGYMEDEIVGKNVSIFM----PSYERH 293 >gi|15641361|ref|NP_230993.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153822062|ref|ZP_01974729.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae B33] gi|229511262|ref|ZP_04400741.1| hypothetical protein VCE_002669 [Vibrio cholerae B33] gi|229518380|ref|ZP_04407824.1| hypothetical protein VCC_002404 [Vibrio cholerae RC9] gi|229608072|ref|YP_002878720.1| hypothetical protein VCD_002990 [Vibrio cholerae MJ-1236] gi|254848471|ref|ZP_05237821.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MO10] gi|255745740|ref|ZP_05419688.1| hypothetical protein VCH_002101 [Vibrio cholera CIRS 101] gi|262158982|ref|ZP_06030094.1| hypothetical protein VIG_002222 [Vibrio cholerae INDRE 91/1] gi|9655841|gb|AAF94507.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126520395|gb|EAZ77618.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae B33] gi|229345095|gb|EEO10069.1| hypothetical protein VCC_002404 [Vibrio cholerae RC9] gi|229351227|gb|EEO16168.1| hypothetical protein VCE_002669 [Vibrio cholerae B33] gi|229370727|gb|ACQ61150.1| hypothetical protein VCD_002990 [Vibrio cholerae MJ-1236] gi|254844176|gb|EET22590.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MO10] gi|255736815|gb|EET92212.1| hypothetical protein VCH_002101 [Vibrio cholera CIRS 101] gi|262029167|gb|EEY47819.1| hypothetical protein VIG_002222 [Vibrio cholerae INDRE 91/1] Length = 1331 Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 144/251 (57%), Gaps = 10/251 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K+ +++L AK+ A+ S K DFLA +SHEIRTP+ AI+G + + N PL Sbjct: 582 DMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---PLD 638 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + +Y I+ S +L I+ND+LD SK+E+GK+N+ +LD+ + ++V L A Sbjct: 639 TTQR-KYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKA 697 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS--TTHTSNEE 736 EK I +IP ++ D + Q+ +N+ NA+ FT S G+I++S + + ++ Sbjct: 698 QEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQ 756 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V LR V+DTG+G+ +L+ F Q NS + GTGLGL ++K +V+ G+ + Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 816 Query: 795 FSTPAKGTLIE 805 S KG+ E Sbjct: 817 HSEEGKGSTFE 827 >gi|229515723|ref|ZP_04405182.1| hypothetical protein VCB_003381 [Vibrio cholerae TMA 21] gi|229347492|gb|EEO12452.1| hypothetical protein VCB_003381 [Vibrio cholerae TMA 21] Length = 1331 Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 144/251 (57%), Gaps = 10/251 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K+ +++L AK+ A+ S K DFLA +SHEIRTP+ AI+G + + N PL Sbjct: 582 DMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---PLD 638 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + +Y I+ S +L I+ND+LD SK+E+GK+N+ +LD+ + ++V L A Sbjct: 639 TTQR-KYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKA 697 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS--TTHTSNEE 736 EK I +IP ++ D + Q+ +N+ NA+ FT S G+I++S + + ++ Sbjct: 698 QEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQ 756 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V LR V+DTG+G+ +L+ F Q NS + GTGLGL ++K +V+ G+ + Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 816 Query: 795 FSTPAKGTLIE 805 S KG+ E Sbjct: 817 HSEEGKGSTFE 827 >gi|147674561|ref|YP_001216911.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O395] gi|262169340|ref|ZP_06037032.1| hypothetical protein VIJ_002565 [Vibrio cholerae RC27] gi|146316444|gb|ABQ20983.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O395] gi|227013266|gb|ACP09476.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O395] gi|262022153|gb|EEY40862.1| hypothetical protein VIJ_002565 [Vibrio cholerae RC27] Length = 1331 Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 144/251 (57%), Gaps = 10/251 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K+ +++L AK+ A+ S K DFLA +SHEIRTP+ AI+G + + N PL Sbjct: 582 DMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---PLD 638 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + +Y I+ S +L I+ND+LD SK+E+GK+N+ +LD+ + ++V L A Sbjct: 639 TTQR-KYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKA 697 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST--THTSNEE 736 EK I +IP ++ D + Q+ +N+ NA+ FT S G+I++S + + ++ Sbjct: 698 QEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQ 756 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V LR V+DTG+G+ +L+ F Q NS + GTGLGL ++K +V+ G+ + Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 816 Query: 795 FSTPAKGTLIE 805 S KG+ E Sbjct: 817 HSEEGKGSTFE 827 >gi|194364516|ref|YP_002027126.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas maltophilia R551-3] gi|194347320|gb|ACF50443.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas maltophilia R551-3] Length = 925 Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 86/260 (33%), Positives = 142/260 (54%), Gaps = 18/260 (6%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 HDIS +Q + LS A++ A+ + KS FLA +SHEIRTPL ++G E++ + Sbjct: 425 HDISRHRQAQAALSSARQAADAANQAKSAFLATMSHEIRTPLYGVLGTLELLGHTTL--- 481 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLV 675 +PR +Y I+ S +++L +++D+LD+SKIESG+++L F P L E+V + + Sbjct: 482 -DPRQSQYLRTIESSSSVLLQLISDVLDVSKIESGQLSLEPAAFSPRELTESVLRSFA-- 538 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A K + I +P R+L D ++Q+ N+LSNAI FT G++++ Sbjct: 539 -ASATCKGLQILVCTDPRLPTRVLGDADRIRQVLGNLLSNAIKFTEH-GRVVLRVRQVQR 596 Query: 735 EE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 E ++ +V DTGVG+ E + +PF Q+ + +GTGLGL ++ +V G Sbjct: 597 EAESSVLVWQVTDTGVGIAAEEQARLFEPFRQVRGAAS--AQGTGLGLSISDRLVRLMSG 654 Query: 791 KFYIFSTPAKGTLIEIIFPL 810 + + S P G+ + PL Sbjct: 655 ELQVVSEPGLGSSFSVRLPL 674 >gi|37677132|ref|NP_937528.1| sensory box sensor histidine kinase/response regulator [Vibrio vulnificus YJ016] gi|37201677|dbj|BAC97498.1| sensory box sensor histidine kinase/response regulator [Vibrio vulnificus YJ016] Length = 1328 Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 110/380 (28%), Positives = 189/380 (49%), Gaps = 35/380 (9%) Query: 444 KRKMEIEVMQLCS----ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFT 498 +RK E +V++ IL AT + + ++ +G L+ N S+L G + +I+ R P Sbjct: 459 QRKAEQKVLEQSQLNQEILNATPNPMYCLSAQGKYLTVNAKFSELTGLAMHEIVGRTPIE 518 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIKKLPFSSC 553 VF +Q+ +H+ T++ Q L + E L + +++ + F++ Sbjct: 519 VFSQQDA----SHHFTQV-----HQELSQEQCSKNYELSLFDSQGGCRDMLVCEASFNNS 569 Query: 554 YSLT------MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + D++E KQ +++L AK A+ S K DFLA +SHEIRTP+ AI+G + Sbjct: 570 QGRVSGIVGILLDLTERKQMESELREAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMA 629 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 + N +P +Y I+ S +L I+ND+LD SKIE+GK+++ SLDE Sbjct: 630 HLALNTEL----DPSQRKYLTRINESAKNLLGIINDILDFSKIEAGKLSVESIDFSLDEV 685 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII 726 +++ A EK I +P ++ D + Q+ +N+ NA+ FT G+I+ Sbjct: 686 FENLTNVISFKAQEKGIEFLLDIDPRVPVGLVGDPLRLGQVLVNLCGNAVKFTEK-GEIL 744 Query: 727 ISTT--HTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 +S S+++V LR V+DTG+G+ ++ F Q S GTGLGL ++K Sbjct: 745 VSVMPESQSSDDVTLRFSVKDTGIGIDKEKIADLFNAFSQADTSITREFGGTGLGLSISK 804 Query: 783 AMVDANMGKFYIFSTPAKGT 802 +V+ G+ + S G+ Sbjct: 805 QLVELMGGQLSVSSAVGMGS 824 >gi|32477914|ref|NP_870908.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32448471|emb|CAD77986.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 953 Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 88/271 (32%), Positives = 144/271 (53%), Gaps = 26/271 (9%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y+ + D+ + K + L AK IAE + + +FLA +SHEIRTP+ AI+G ++++K+ Sbjct: 531 YTGYVIDVDDRKAFEQSLEQAKVIAENANRSRGEFLANMSHEIRTPMAAILGHADILKDH 590 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 L +P I+ I R+GN +L+I+ND+LD+SKI+SGKM L + V D ++E S Sbjct: 591 ----LRDPDNIQVVETIRRNGNFLLNIINDILDLSKIDSGKMQLETDRVRPDGLLAEVRS 646 Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII------ 726 L+ + A+EK + ++ F IP ++ D ++QI LN++ NAI FT SG I Sbjct: 647 LMDVRASEKHLPLKIEFDGPIPDLIETDAVRLRQILLNLVGNAIKFTDSGEVKILVGYDG 706 Query: 727 ---------------ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 + + +I ++ DTG+G+ + +PF Q ++ Sbjct: 707 PGKRAAEIDQSDPSKLQSPVAGTCRLIFQIVDTGIGIKPEDQASLFEPFVQADSTSTRSF 766 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GTGLGL + + + A G + ST KG+ Sbjct: 767 GGTGLGLAICRRLAHALGGDVSVESTYGKGS 797 >gi|117919558|ref|YP_868750.1| hybrid sensory histidine kinase BarA [Shewanella sp. ANA-3] gi|117611890|gb|ABK47344.1| Hpt sensor hybrid histidine kinase [Shewanella sp. ANA-3] Length = 935 Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 92/246 (37%), Positives = 142/246 (57%), Gaps = 10/246 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A + S KS+FLA +SHE+RTPL +IGF+ +++K PL + + ++Y N Sbjct: 286 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKT----PLHSSQ-VDYIN 340 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS +L I+ND+LD SK+E+GKM L P L E + E I+L+ A K + + Sbjct: 341 TIERSATNLLAIINDILDFSKLEAGKMVLENMPFGLRETLGETITLISGSAQAKGLELVV 400 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDT 744 A N+P + D V QI N++ NAI FT SG ++ + + ++++V+LR V DT Sbjct: 401 DIAPNVPDNVNGDAMRVCQIINNLVGNAIKFTDSGSVLVKLELQNQTDDQVVLRCDVIDT 460 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + + FGQ +S R GTGLGL + K +V+ G+ S+ KG+ Sbjct: 461 GIGIDENQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSVDKGSNF 520 Query: 805 EIIFPL 810 PL Sbjct: 521 WFTLPL 526 >gi|258621553|ref|ZP_05716586.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus VM573] gi|258586171|gb|EEW10887.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus VM573] Length = 1325 Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 108/376 (28%), Positives = 184/376 (48%), Gaps = 20/376 (5%) Query: 441 RINKRKMEIEVMQLCS-ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 R+ +RK+ +E QL IL+AT + + ++ G L+ N +L G D++ KP Sbjct: 461 RLAERKV-LEQSQLNQEILDATPNPMYCLSANGTFLTVNAKFLELMGLYNNDVIGKP--- 516 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQT------LEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 ++ PS + + + +Q + I + E L+ + + Sbjct: 517 -PQEIFPSSVAERFAQAHQILTQQQSSQNYEISLIDYAGVQREMLVYEASFSDRADKVNG 575 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + D++E K+ + +L AK A+ S K DFLA +SHEIRTP+ AI+G + + N Sbjct: 576 IVGILLDMTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT 635 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + + +Y I+ S +L I+ND+LD SKIE+GK+N+ SLD+ + + Sbjct: 636 QL----DATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTA 691 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 ++ L A EK I +IP ++ D + Q+ +N+ NA+ FT G +I + Sbjct: 692 VISLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISARVRQ 751 Query: 733 SNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 NE+ ++ V+DTG+G+ +L F Q NS + GTGLGL ++K +V+ Sbjct: 752 LNEQQVMLLFAVKDTGIGIAQEKLNDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMG 811 Query: 790 GKFYIFSTPAKGTLIE 805 G+ + S KG+ E Sbjct: 812 GQISVHSEEGKGSTFE 827 >gi|90577498|ref|ZP_01233309.1| sensor protein LuxQ [Vibrio angustum S14] gi|90440584|gb|EAS65764.1| sensor protein LuxQ [Vibrio angustum S14] Length = 576 Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 81/250 (32%), Positives = 137/250 (54%), Gaps = 7/250 (2%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 N+ AKK AE DFLA ++HE+RTPL ++G +E++++ PL N + + Sbjct: 198 NQAIDAKKRAEDSEQSTRDFLAMINHELRTPLNGLLGAAELLQDT---PLDNDQQ-KLLT 253 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 ++ SG L+ I+NDLLD SKI +G + L +P + + ++EKR+ Sbjct: 254 TLNHSGELLRAIINDLLDYSKINAGMLELIEKPFDCHLLAVKLEDIFTHRSHEKRLDFNI 313 Query: 689 SFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 ++N++P+I + D +KQI +N++SNAI FTP+G + + N+ + V+D+G G Sbjct: 314 YYSNDLPKIFIGDEDRIKQIFVNLISNAIKFTPAG--FVHAKLWWQNKHLQFTVKDSGCG 371 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + + K KPF Q+ N+ + EGTGLGL + K + + G + S+ +G + Sbjct: 372 IDHSDQHKLFKPFSQVDNTSKRSHEGTGLGLVICKQLCEQMGGSIRVESSLGRGACFNVS 431 Query: 808 FPLYDTSHPH 817 PL + H H Sbjct: 432 LPLAISDHAH 441 >gi|153825247|ref|ZP_01977914.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-2] gi|149741075|gb|EDM55134.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-2] Length = 1331 Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 144/251 (57%), Gaps = 10/251 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K+ +++L AK+ A+ S K DFLA +SHEIRTP+ AI+G + + N PL Sbjct: 582 DMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---PLD 638 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + +Y I+ S +L I+ND+LD SK+E+GK+N+ +LD+ + ++V L A Sbjct: 639 TTQR-KYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKA 697 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS--TTHTSNEE 736 EK I +IP ++ D + Q+ +N+ NA+ FT S G+I++S + + ++ Sbjct: 698 QEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQ 756 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V LR V+DTG+G+ +L+ F Q NS + GTGLGL ++K +V+ G+ + Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 816 Query: 795 FSTPAKGTLIE 805 S KG+ E Sbjct: 817 HSEEGKGSTFE 827 >gi|258627567|ref|ZP_05722344.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus VM603] gi|258580149|gb|EEW05121.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus VM603] Length = 1325 Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 108/376 (28%), Positives = 184/376 (48%), Gaps = 20/376 (5%) Query: 441 RINKRKMEIEVMQLCS-ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 R+ +RK+ +E QL IL+AT + + ++ G L+ N +L G D++ KP Sbjct: 461 RLAERKV-LEQSQLNQEILDATPNPMYCLSANGTFLTVNAKFLELMGLYNNDVIGKP--- 516 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQT------LEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 ++ PS + + + +Q + I + E L+ + + Sbjct: 517 -PQEIFPSSVAERFAQAHQILTQQQSSQNYEISLIDYAGVQREMLVYEASFSDRADKVNG 575 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + D++E K+ + +L AK A+ S K DFLA +SHEIRTP+ AI+G + + N Sbjct: 576 IVGILLDMTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT 635 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + + +Y I+ S +L I+ND+LD SKIE+GK+N+ SLD+ + + Sbjct: 636 QL----DATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTA 691 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 ++ L A EK I +IP ++ D + Q+ +N+ NA+ FT G +I + Sbjct: 692 VISLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISARVRQ 751 Query: 733 SNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 NE+ ++ V+DTG+G+ +L F Q NS + GTGLGL ++K +V+ Sbjct: 752 INEQQVMLLFAVKDTGIGIAQEKLNDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMG 811 Query: 790 GKFYIFSTPAKGTLIE 805 G+ + S KG+ E Sbjct: 812 GQISVHSEEGKGSTFE 827 >gi|257792718|ref|YP_003183324.1| histidine kinase [Eggerthella lenta DSM 2243] gi|317489005|ref|ZP_07947532.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA] gi|325831168|ref|ZP_08164492.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Eggerthella sp. HGA1] gi|257476615|gb|ACV56935.1| histidine kinase [Eggerthella lenta DSM 2243] gi|316911872|gb|EFV33454.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA] gi|325487089|gb|EGC89535.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Eggerthella sp. HGA1] Length = 908 Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 90/276 (32%), Positives = 143/276 (51%), Gaps = 18/276 (6%) Query: 545 IKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 +K+L F L M D++ K+ + + A +AE ++ KS+FL+R+SHEIRTP+ Sbjct: 442 VKRLTFEDKPQLLVVMRDVTADKEIQLSMKDAMDVAEAANAAKSEFLSRMSHEIRTPMNV 501 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 I+G ++ R P + E I + + +L ++ND+LDISKIE+GKM L EP Sbjct: 502 ILG---TLQLARSNPDDREKVAETLKKIGDASDHLLGLINDVLDISKIENGKMTLASEPF 558 Query: 663 SLDEAVSEAISLVQLYANEKR---ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 L +S S V++ ++ ++ A+ + + D R +KQ+ LN+L+NA+ +T Sbjct: 559 RLSAVLSHVASAVRVQCEQRAQEFVVTTPPCADAV--FVGDARRIKQLLLNLLTNAVKYT 616 Query: 720 PSGGQIIISTTHTSN-----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 P GG + TT +V V D G+GM+ E +PF S R +GT Sbjct: 617 PCGGCVRFETTVAKGAAMGYRQVKFTVSDNGIGMSEEFKEHIFEPFSMEGRS---REQGT 673 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GLG+P+ K +V G + ST +GT + F L Sbjct: 674 GLGMPIVKNIVTMMAGDIAVESTKGQGTTFTVTFNL 709 >gi|303248462|ref|ZP_07334721.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490173|gb|EFL50092.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 1324 Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 109/395 (27%), Positives = 185/395 (46%), Gaps = 28/395 (7%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 E ++R+ + + ++ ++L DGI ++ + + S+N+A+ L+ E + RK Sbjct: 671 EQAESRLRRERRFLD-----TVLSGIQDGICVLTPDLTVTSSNKAMRALYAERGEMVGRK 725 Query: 496 PFTVFLEQNTPS----VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 F +F + P + T L++ L + KI GS L + Sbjct: 726 CFDLFHGRGMPCNDCPSLRALATSKLAISL---VPKIESGSASGWVELFCYPLFDDDGVV 782 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 S + DI+ K+ + +L+ A + AE S K FLA +SHEIRTPL A++G+ +++ Sbjct: 783 SGVVEIVRDITAGKRLEAELADALERAEGASQAKGAFLANMSHEIRTPLNAVLGYVQLML 842 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 R PR E ++ S +L I+ND+LD SKIE+G+M L EP L + Sbjct: 843 ADRL----EPRQRERLTVVEESAGTLLSIINDILDYSKIEAGRMELKAEPFDLVRGLEGV 898 Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-----QI 725 + ++ A K + + A N+P + D ++Q+ N+++NA+ +T GG I Sbjct: 899 LKEQEVLAKAKGLDLVLDIAENVPGAVRGDGLRLRQVLRNLVNNAVKYTDKGGVRLGVAI 958 Query: 726 IISTTHTSNEE---VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 + S E + LR V DTG+G+ + E F QI R GTGLGL + Sbjct: 959 ADAPCAASGGEGGRLWLRFTVADTGIGIPYEQQETIFDSFTQIDGGLTKRQAGTGLGLAI 1018 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 + + G + STP +G+ + P +D + Sbjct: 1019 CRRLAGLMGGTISLESTPGQGSAFRLECP-FDAAR 1052 >gi|170078867|ref|YP_001735505.1| hybrid sensory kinase [Synechococcus sp. PCC 7002] gi|169886536|gb|ACB00250.1| hybrid sensory kinase [Synechococcus sp. PCC 7002] Length = 631 Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 83/233 (35%), Positives = 132/233 (56%), Gaps = 14/233 (6%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK+ AE + KS+FLA +SHEIRTPL +IG ++++ E I Sbjct: 356 LIQAKQAAEMAAQEKSEFLANMSHEIRTPLNGVIGVAQLLLTMDL----KDDQAELVAII 411 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + SG +L+I+ND+LD +IESG + L S E + +L+++ A++K I ++ Sbjct: 412 EDSGKTLLNIINDILDFLRIESGSLRLEARCFSFQELLKSVFTLLKVQADQKDIDLQYCV 471 Query: 691 ANNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-------NEEVILRV 741 A++IP IL DLR ++QI N+L NA+ FT +G ++ T+HT EE+ ++ Sbjct: 472 ADSIPNILMGDDLR-LRQILFNLLGNALKFTATGSVQLVITSHTVPSLSDPPTEELSFQI 530 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 DTG+G+ +L + +PF Q S R G+GLGL +AK +V+ GK ++ Sbjct: 531 LDTGIGIQVAQLNQLFQPFIQADASISRRYGGSGLGLAIAKRLVNLMGGKIWV 583 >gi|319781148|ref|YP_004140624.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167036|gb|ADV10574.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 1545 Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 97/337 (28%), Positives = 170/337 (50%), Gaps = 23/337 (6%) Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL--GSTK 534 N+ L G+ E+ + K + + +N L + + + ++ E +TL GS + Sbjct: 885 VNKGWCDLTGFSKEEAIGKTDIEIFGPDGEAFVNGDLAVLRTGETQEVEETVTLADGSVR 944 Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 + +I S T DI+E K + +L A++ A KS+FLA +SH Sbjct: 945 HQFARKGAMIASDGSLYLIGSTT--DITELKMREAELREARQRAVLADRAKSEFLANMSH 1002 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 EIRTP+ ++G +E++ +P+ + + I +SGN +L I+ND+LD SKI++G+ Sbjct: 1003 EIRTPMNGVLGMAELLAKSDL----DPKQKTFTDIIVKSGNALLTIINDILDFSKIDAGQ 1058 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEK--RILIRTSFANNIPRI----LADLRSVKQIA 708 + L P +L EA+ + +LV A EK +++R PR+ + D+ ++QI Sbjct: 1059 LVLDPAPFNLAEAIEDVATLVSTRAKEKDLELIVRVE-----PRLESLFIGDVGRIRQIV 1113 Query: 709 LNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 N+L NA+ FT G +++ T + ++ + V DTG+G+ +L+ + F Q+ Sbjct: 1114 TNLLGNAVKFTDE-GHVLVDVTGERVPTGTKLTISVTDTGIGIPEEKLKLVFEKFSQVDT 1172 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 S R EGTGLGL + +V+ G + S KG+ Sbjct: 1173 SSTRRHEGTGLGLAITSRLVELMGGDIGVESAEGKGS 1209 >gi|153213464|ref|ZP_01948775.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 1587] gi|124115928|gb|EAY34748.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 1587] Length = 1331 Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 144/251 (57%), Gaps = 10/251 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K+ +++L AK+ A+ S K DFLA +SHEIRTP+ AI+G + + N PL Sbjct: 582 DMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---PLD 638 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + +Y I+ S +L I+ND+LD SK+E+GK+N+ +LD+ + ++V L A Sbjct: 639 TTQR-KYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKA 697 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS--TTHTSNEE 736 EK I +IP ++ D + Q+ +N+ NA+ FT S G+I++S + + ++ Sbjct: 698 QEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQ 756 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V LR V+DTG+G+ +L+ F Q NS + GTGLGL ++K +V+ G+ + Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 816 Query: 795 FSTPAKGTLIE 805 S KG+ E Sbjct: 817 HSEEGKGSTFE 827 >gi|266622770|ref|ZP_06115705.1| putative response regulator receiver domain protein [Clostridium hathewayi DSM 13479] gi|288865493|gb|EFC97791.1| putative response regulator receiver domain protein [Clostridium hathewayi DSM 13479] Length = 1052 Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 84/258 (32%), Positives = 137/258 (53%), Gaps = 11/258 (4%) Query: 560 DISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 DI+E ++ ++KL A + A++ + KSDFL+R+SH+IRTP+ I G +E+ + Sbjct: 521 DITELRELQSKLEERTVMLNTALEEAKQANEAKSDFLSRMSHDIRTPMNVIAGMTEIAGS 580 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + P R + I S + +L ++ND+LD+S+IE+G +++ PVSL + E I Sbjct: 581 HVYEP---ERVKDCLQKIRLSSHHLLGLINDVLDMSRIENGNFHINMVPVSLPAVLREVI 637 Query: 673 SLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + EK + N + +D ++QI LN+LSNA FTP G+I+ Sbjct: 638 MITLAGIREKAQIFDVHLVNLEDEQFYSDALRLRQILLNLLSNACKFTPVSGRIVFEVEQ 697 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 +I V DTG GM+ LE + F + +S+ + EG+GLG+ + K +VD G Sbjct: 698 KDRTALIFTVSDTGAGMSPEFLEHIFEAFTREQDSRTDQIEGSGLGMCITKRLVDMMEGT 757 Query: 792 FYIFSTPAKGTLIEIIFP 809 + S P KGT ++ P Sbjct: 758 ITVSSCPGKGTTFQVTLP 775 >gi|32477912|ref|NP_870906.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32448469|emb|CAD77984.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 1122 Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 84/256 (32%), Positives = 149/256 (58%), Gaps = 14/256 (5%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + + +L A+ +AE S KS F+A +SHEIRTP+TAI+G+++++++ + +P+ Sbjct: 702 ERAESQLELEQARAVAEAASQSKSAFVANMSHEIRTPMTAILGYADLVRDM----IEDPQ 757 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYA 679 IE+ I R+G+ +L+I+ND+LD+SKIE+GK+ ++ FEP L E V S++++ A Sbjct: 758 AIEHLETIRRNGDYLLEIINDILDLSKIEAGKLEVNHEKFEPARLIEDVR---SIMEVRA 814 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 E + + + +P+ I +D + +KQI +N++ NAI FT G + N+ + Sbjct: 815 KEGGLSLDVQYIGLLPKTIESDGKRLKQILINLVGNAIKFTQKG---WVQIRVRFNKLLH 871 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + + DTG+GM++ + ++ KPF Q S GTGLGL ++K + + G ST Sbjct: 872 IDIVDTGIGMSDEQQKRLFKPFSQGDASVTRTFGGTGLGLAISKRLTEMLGGTIIASSTE 931 Query: 799 AKGTLIEIIFPLYDTS 814 G+ + + D + Sbjct: 932 GVGSTFTVSVAVGDLA 947 >gi|254286552|ref|ZP_04961508.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae AM-19226] gi|150423310|gb|EDN15255.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae AM-19226] Length = 1331 Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 144/251 (57%), Gaps = 10/251 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K+ +++L AK+ A+ S K DFLA +SHEIRTP+ AI+G + + N PL Sbjct: 582 DMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---PLD 638 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + +Y I+ S +L I+ND+LD SK+E+GK+N+ +LD+ + ++V L A Sbjct: 639 TTQR-KYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKA 697 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS--TTHTSNEE 736 EK I +IP ++ D + Q+ +N+ NA+ FT S G+I++S + + ++ Sbjct: 698 QEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQ 756 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V LR V+DTG+G+ +L+ F Q NS + GTGLGL ++K +V+ G+ + Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITV 816 Query: 795 FSTPAKGTLIE 805 S KG+ E Sbjct: 817 HSEEGKGSTFE 827 >gi|332666984|ref|YP_004449772.1| signal transduction histidine kinase with CheB and CheR activity [Haliscomenobacter hydrossis DSM 1100] gi|332335798|gb|AEE52899.1| signal transduction histidine kinase with CheB and CheR activity [Haliscomenobacter hydrossis DSM 1100] Length = 1316 Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 97/289 (33%), Positives = 152/289 (52%), Gaps = 30/289 (10%) Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEW-----------KQEKNKLSHAKKIAEKESS--- 583 LL+ I++K LTM DI++ KQ ++L AK+IAE+++ Sbjct: 874 LLNAHRIVQKSKNEELIVLTMVDITDARKLALELQKKEKQVLDELMEAKRIAEQKTKIAE 933 Query: 584 ----HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 K FL+ +SHEIRTP+ AIIGF+ V+ + N EY N I SG ++ Sbjct: 934 EAVKAKQQFLSNMSHEIRTPMNAIIGFTNVVMKTKL----NEAQKEYINAIKVSGESLII 989 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL- 698 ++ND+LD++K+E+GKM P L +VS+ + L + EK +++ + N+P IL Sbjct: 990 LINDILDLAKVEAGKMVFEHSPFRLFSSVSDMLHLFETKMQEKNLVLIKQYDTNVPEILV 1049 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELE 754 D ++QI LN++SNA+ FT + G+I + ++ V V DTG+G+ L+ Sbjct: 1050 GDPVRLRQIMLNLISNAVKFT-NAGKITVRVDLLKEDQDHVSVEFSVSDTGIGIPENNLK 1108 Query: 755 KAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + F QI P + ++ G GTGLGL + K MV G + S KG+ Sbjct: 1109 QIFDAFEQIAPETTRLNG-GTGLGLAIVKQMVKLQGGNVKVKSKVDKGS 1156 >gi|323499281|ref|ZP_08104258.1| hypothetical protein VISI1226_03645 [Vibrio sinaloensis DSM 21326] gi|323315669|gb|EGA68703.1| hypothetical protein VISI1226_03645 [Vibrio sinaloensis DSM 21326] Length = 872 Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 84/255 (32%), Positives = 141/255 (55%), Gaps = 6/255 (2%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 + I++ K + L AK+ AE + KS FLA +SHEIRTPL IIG +E++ + Sbjct: 355 YTIAKQKAYEQDLVKAKEHAEAANQAKSIFLANMSHEIRTPLNGIIGMTEILADSHLSAA 414 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + N +D S + +L ++ND+LD+SKIESG + L S+ E + + +++V + Sbjct: 415 QK----DILNDVDASSHALLVLINDILDLSKIESGNLALSPHMASVREIIFDTVNMVNSH 470 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A ++ + + FA+++P L D VKQ+ +N++SNAI F+P G +I+ + + + Sbjct: 471 ALKQEVTLHVEFADHVPNHLELDEFRVKQVLMNLMSNAIKFSPQGN-VIMRVSVVEHHGL 529 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V DTGVG+ +L + KPF Q + R GTGLGL + +VD G+ + S Sbjct: 530 SIEVADTGVGIAEDKLAEIFKPFTQEDGTITRRFGGTGLGLTICNQLVDLMNGQISVESG 589 Query: 798 PAKGTLIEIIFPLYD 812 +G+ P+ + Sbjct: 590 LGEGSRFTFTLPMVE 604 >gi|71907563|ref|YP_285150.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71847184|gb|AAZ46680.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 1015 Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 104/362 (28%), Positives = 177/362 (48%), Gaps = 15/362 (4%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 ILE+++DG+ I+ GII N A + GY E ++ P + + + Sbjct: 510 ILESSADGLYGIDCNGIITFINPAACAILGYGAEQVIGLPAHSLFHHSKQDGSPYSAADC 569 Query: 517 LSLDLRQTLEKITLGSTK--EEKLLSLRIIIKKLPFSSCYSLT-----MHDISEWKQEKN 569 S + + +K+ + ++ ++ P +T D+S + Sbjct: 570 PSYNALRLGQKVRVDDEVYWHADGHAVPVMYATHPMLQNGQITGAVTSFIDVSVQRAAAQ 629 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPLGNPRYIEYAN 628 A AE + KS+FLA +SHEIRTPL ++GF+++ +N + + Sbjct: 630 AREQALIAAESLAKIKSEFLANMSHEIRTPLNGVLGFAQIGYRNAENSEKARDSFAK--- 686 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I SGN +L ++ND+LD SKIE+GK+ + V L E V A+ L++ A K+I ++ Sbjct: 687 -IQLSGNRLLGVINDILDFSKIEAGKLRIEQTEVVLSEVVEHALDLLRERARAKQIELQV 745 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 A ++P ++D + Q+ LNILSNA+ FT G + + + + ++ +V DTG+G Sbjct: 746 ELAPDLPLTCISDPLRMGQVLLNILSNAVKFTEVGS--VTLSVNCRDGMLLFKVADTGIG 803 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 M+ ++ PF Q+ S + GTGLGL ++K +++ GK I S P GT +E Sbjct: 804 MSAEQIGTLFNPFHQVDASASRKFGGTGLGLAISKRILELMNGKVSIDSLPGVGTSVEFC 863 Query: 808 FP 809 P Sbjct: 864 LP 865 >gi|304321161|ref|YP_003854804.1| two-component sensor histidine kinase [Parvularcula bermudensis HTCC2503] gi|303300063|gb|ADM09662.1| two-component sensor histidine kinase [Parvularcula bermudensis HTCC2503] Length = 397 Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 113/366 (30%), Positives = 183/366 (50%), Gaps = 29/366 (7%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI- 516 L D +A +G L + + +FG P E ++ P + + L ++ Sbjct: 20 LSGGGDVLAAHGPDGRFLVASEGAAAMFGLPAEKLIGAPIMDVVATGDQEKLLSALGQVA 79 Query: 517 -------LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569 +S D R +G E I S + +I E + E+ Sbjct: 80 APGGRDQVSFDCRTRARPGHVGQMVE---------ISLSRTGSGFRSVTRNI-EHRLERE 129 Query: 570 KLSHAKKIAEKE---SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + AK AE+E + + D LA VSHEIRTPL A+IGF++ I ++FGPL N RY +Y Sbjct: 130 TV--AKTRAEQEIQATMRRRDQLANVSHEIRTPLNAVIGFADAIYGEQFGPLSNDRYRDY 187 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 A I SG +L +++D+LD+SK E+ + L EP E + + ++QL A+E + + Sbjct: 188 ARIIHDSGQHLLSLLSDILDLSKAEANETPLQLEPEDPAELIRFCVDIMQLRASEAGLTL 247 Query: 687 RTSFANNI--PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 R ++ R+ D + V+QI LN+LSNA+ FT G+I +++ E +++ V DT Sbjct: 248 RFDGGSDQLGDRVFLDAKIVRQIILNLLSNALKFTEK-GEITLASKR-EGESLVMTVSDT 305 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRG-EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 GVGM+ +L + + F Q S+ +RG GTG+GL L+KA+ + G+ + S +GT Sbjct: 306 GVGMSPDDLSRVGRRFHQ-ARSEGVRGARGTGIGLSLSKALARVHGGELTLMSRLGEGTT 364 Query: 804 IEIIFP 809 + P Sbjct: 365 ATLRLP 370 >gi|284052794|ref|ZP_06383004.1| two-component hybrid sensor and regulator [Arthrospira platensis str. Paraca] Length = 549 Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 87/266 (32%), Positives = 147/266 (55%), Gaps = 11/266 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DISE K + +L ++ + K +FLA +SHE+RTPL I+G SE +K G L Sbjct: 141 DISERKLMEIELQKTVAELDRATRLKDEFLANMSHELRTPLNGILGMSEALKEGILGALN 200 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + ++ A I++SG +L++++D+LDISKIE+GK+ L+ V + E + +++LV A Sbjct: 201 SNQHHAIA-MIEKSGKHLLELISDILDISKIEAGKLELYLTEVRVQELCTSSLTLVNHLA 259 Query: 680 NEKRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIIST-------- 729 K+I I + + + L D R ++Q+ +N+LSNA+ FT G+I ++ Sbjct: 260 FTKQINIEINIPQALEKTLIKVDNRRLRQVLINLLSNALKFTHKSGKINLNVGIKTSPNA 319 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 ++ + + V D G+G+ +L K PF QI +S + GTGLGL L K +++ + Sbjct: 320 AISTPQSIYFSVIDNGIGIAPDDLNKLFLPFTQIDSSLNRQYSGTGLGLALVKQIIELHG 379 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSH 815 G + S KG+ + P +TS+ Sbjct: 380 GCVEVSSQLGKGSCFTVYLPYQETSN 405 >gi|153869805|ref|ZP_01999330.1| sensor histidine kinase FexB [Beggiatoa sp. PS] gi|152073733|gb|EDN70674.1| sensor histidine kinase FexB [Beggiatoa sp. PS] Length = 681 Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 87/273 (31%), Positives = 148/273 (54%), Gaps = 22/273 (8%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DI+E KQ + +L A + AE + KS FLA +SHE+RTPL A++G++++ + Sbjct: 311 SFEDITERKQAEVQLQKALQTAETANHTKSVFLANMSHELRTPLNAVLGYTQIFQQ---D 367 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 N + E + I R+G +L ++ND+LDISK+E+G++ + + + L + + + L Q Sbjct: 368 DTLNKQQREGIDIIHRNGEYLLTLINDILDISKVEAGQLEFYPKDMKLSQFLQGIVQLFQ 427 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG--------QIII 727 + +K+I + +P I+ AD + ++QI +N+LSNAI FT G Q I Sbjct: 428 MRTQQKKIEFSYKPLSALPEIIHADEKRLRQIFINLLSNAIKFTDKGSVTFTVKTEQAKI 487 Query: 728 S----------TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 +T S + ++ DTG+G+ ++EL+K PF Q + + GTGLG Sbjct: 488 KNEPSWVKNTLSTFYSYSRLHFQIEDTGIGIASHELDKIFLPFQQADKNHYNKPMGTGLG 547 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 L + K +VD G ++ S KG++ + F L Sbjct: 548 LSITKNLVDMMDGSIHVESLLGKGSIFWVEFDL 580 >gi|172060290|ref|YP_001807942.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] gi|171992807|gb|ACB63726.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] Length = 989 Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 94/362 (25%), Positives = 182/362 (50%), Gaps = 33/362 (9%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYP--------VEDILRKPFTVFLEQN----T 505 E + G+A + +G L N ++ G+P + D++ F+V + T Sbjct: 410 FENAAVGVAHCDLDGRFLRVNHRSGEIVGWPRDALQHRRLHDLIHADFSVASIERFRLLT 469 Query: 506 PSVMNHYLTEI--LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 + HY E+ + D + +++ + + +I+ + DISE Sbjct: 470 EGKLKHYSEEVPLVRFDGERVWVTLSVALQHDASGQTAHVIV-----------IIQDISE 518 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KNQRFGPLGNPR 622 K + + AK AE S K FLA +SHE+RTPL I+G+++++ ++ R + R Sbjct: 519 RKALEETVRVAKDAAEAASRAKDQFLANISHELRTPLNGILGYAQILQRDVRL----DTR 574 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + I++SG +L ++ND+LD +++ +GK+ L V L + +V + A +K Sbjct: 575 QLASVGVIEQSGQHLLTLINDILDFARLGAGKLELQVGEVPLRGFLETIAEIVAVRAQQK 634 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 R+++ A ++P ++ D R ++Q+ LN+L+NA+ FT G++ +S + + + V Sbjct: 635 RLVLNYVAAPDLPAVVRVDERRLRQVLLNLLANAVQFTDR-GEVTLSVSRGAAGRLRFEV 693 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RDTG+G++ LE +PF Q + + R G GLGL +++ +V G+ + S+ +G Sbjct: 694 RDTGIGVSADRLEAIFQPFEQAGDHTR-RSGGAGLGLAISQQLVRMMGGEIEVTSSAGEG 752 Query: 802 TL 803 ++ Sbjct: 753 SV 754 >gi|297538157|ref|YP_003673926.1| PAS/PAC sensor hybrid histidine kinase [Methylotenera sp. 301] gi|297257504|gb|ADI29349.1| PAS/PAC sensor hybrid histidine kinase [Methylotenera sp. 301] Length = 873 Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 145/247 (58%), Gaps = 8/247 (3%) Query: 557 TMHDISEWKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 T+H E Q KN +L A +AEK + KSDFL+ +SHE+RTPL AI+GF+++I++ Sbjct: 471 TLH---EALQLKNVELERATFVAEKANLAKSDFLSSMSHELRTPLGAILGFAQLIESGTP 527 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P + + + + I ++G +L+++N++LD++ IESGK+ L EPV L + + E +++ Sbjct: 528 APTASQK--KSIDQILKAGWYLLELINEVLDLALIESGKLALSLEPVLLADVMHECEAMI 585 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A + I + + D VKQI +N+LSNAI + G + + + T ++ Sbjct: 586 EPQAQSREINVIFKQPEVPYCVRGDRTRVKQIVINLLSNAIKYNRVNGTVTVECSITPHD 645 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V + V+DTG G+T+ EL + +PF ++ Q + EGTG+GL + K + D GK + Sbjct: 646 TVRISVQDTGAGLTDEELTQLFQPFNRL--GQNTKEEGTGIGLVVCKRLTDLMKGKIGVE 703 Query: 796 STPAKGT 802 S +G+ Sbjct: 704 SIVGEGS 710 >gi|86160736|ref|YP_467521.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85777247|gb|ABC84084.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 461 Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 81/254 (31%), Positives = 137/254 (53%), Gaps = 2/254 (0%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + + KL + ++ KS+FLA +SHE+RTPLT++IG+SE++ GPL + Sbjct: 197 ELQDKNQKLEDSYAKLKELDRLKSNFLATMSHELRTPLTSVIGYSEMMLEGLGGPLTAEQ 256 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 EY I G +L ++ +LDISKIE+G++ L V + + +A++ + A +K Sbjct: 257 R-EYLGIIMEKGENLLQLITSILDISKIEAGRVRLVLSEVDAVQLMRDAVATLLPIARKK 315 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + + + +PRI AD ++Q +N+ SNA+ FTP GG I ++ E + + V Sbjct: 316 GLKVSCD-PSPLPRIHADRDKLRQCLVNLCSNAVKFTPPGGSITVNAEVLQGERLAIHVV 374 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D+G+G+ L K F Q+ S G GLGL + K+ V+A+ G+ + S G+ Sbjct: 375 DSGIGIPEEHLAKVFDVFYQVDGSSTREYGGAGLGLAIVKSFVEAHGGEIRVRSAAGTGS 434 Query: 803 LIEIIFPLYDTSHP 816 + ++ P+ T P Sbjct: 435 IFTVLLPIRATPAP 448 >gi|330916933|ref|XP_003297614.1| hypothetical protein PTT_08080 [Pyrenophora teres f. teres 0-1] gi|311329607|gb|EFQ94291.1| hypothetical protein PTT_08080 [Pyrenophora teres f. teres 0-1] Length = 2379 Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 89/235 (37%), Positives = 133/235 (56%), Gaps = 11/235 (4%) Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 K+ E+ + KS FLA VSHE+RTPL +IG SE++K PL N YA+ I + Sbjct: 1881 KLKEEAARAKSLFLANVSHELRTPLNGVIGMSELLKA---SPL-NGEQTGYADSIRVCAD 1936 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL--IRTSFANN 693 +L I+NDLLD SK+E+GKMN+ P+SL+E ++E + + Y N +R L I N Sbjct: 1937 TLLSIINDLLDYSKLEAGKMNVMEMPISLNETIAEVVRALA-YTNAERGLKTIEQLELNP 1995 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTN 750 ++AD + QI +N+LSN+ FTP G + + + +V V DTG+G+ + Sbjct: 1996 EMLVMADPVRLHQILMNLLSNSYKFTPRGSVTVRAVVDREGDDWVDVTCSVIDTGIGIPD 2055 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM-GKFYIFSTPAKGTLI 804 + +K PF QI +S GTGLGL + KA+++ M G + S P +GT + Sbjct: 2056 EQKQKLFLPFSQIESSSTRSYGGTGLGLSICKALIENVMHGTVRLESQPGQGTTV 2110 >gi|87118404|ref|ZP_01074303.1| probable sensor/response regulator hybrid [Marinomonas sp. MED121] gi|86166038|gb|EAQ67304.1| probable sensor/response regulator hybrid [Marinomonas sp. MED121] Length = 1317 Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 109/362 (30%), Positives = 178/362 (49%), Gaps = 25/362 (6%) Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEIL 517 E+TSD + ++ G ++ N+A G + +L RK F +F ++ S Y E+ Sbjct: 649 ESTSDAVLWMDDVGAMIKVNQAACDALGVKSQVLLGRKLFDIF-PDHSYSWWRPYQIEL- 706 Query: 518 SLDLRQTLEKITLGST-----KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 Q +K+ ++ EE +S+ + L L DI++ +++++L+ Sbjct: 707 -----QQYKKVWFDTSFHNVHGEEVHVSVNANLIYLDGKEYVHLVARDINDRLKKEHELA 761 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 AK+ A+ S KS FLA +SHE+RTP+ A+IG E++K P+ +++ID+ Sbjct: 762 TAKERADIASEAKSHFLANMSHELRTPMNAVIGLLELVKKTSLSPVQ-------SDFIDK 814 Query: 633 ---SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + + +L I+ND+LD SKIE+ M + L + E ++ K I + Sbjct: 815 TQVAAHSLLKILNDILDFSKIEANSMLVEKHEFQLSSLIDEMALILSASLTTKDIEVLFD 874 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 +N+P I D +KQI LN+ SNAI FT G ++IS S E+ + V D+G+GM Sbjct: 875 IDDNLPETIQTDALKLKQILLNLGSNAIKFTQK-GHVLISIKMLSENEISMCVEDSGIGM 933 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +LE F Q S R GTGLGL + K +++ G + S KGT + Sbjct: 934 NPEQLEHIFTDFKQAEASINRRFGGTGLGLAITKKLIELMDGSIRVESHLGKGTSFHVQL 993 Query: 809 PL 810 PL Sbjct: 994 PL 995 >gi|315185412|gb|EFU19184.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta thermophila DSM 6578] Length = 1278 Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 106/361 (29%), Positives = 178/361 (49%), Gaps = 11/361 (3%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT- 514 +I + G II+ I+ N ++++ GY +E+++ + ++F + + LT Sbjct: 667 AIADTAPYGTVIIDANHTIVYANPYMARIHGYRLEEVMGQHLSIFHTEEQYEKLIEELTR 726 Query: 515 -EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 E + + Q + + G L + I + + + D+S K+ + KL Sbjct: 727 AEDVGVMPSQEIWHVYQGQLPFPMLTTATFIKDEEGHVTYIGIVSLDMSLQKEAEQKLKE 786 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK+ AE+ KS+FLA +SHEIRTPL AIIGF++++ + P G + Y + I S Sbjct: 787 AKEEAERAMRAKSEFLANMSHEIRTPLNAIIGFTDLLASS--FPSG--KEASYLDAIRSS 842 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +L ++ND+LD+SKIE+GKM L + PV L + E ++ + K + +A Sbjct: 843 GKNLLMLINDILDLSKIEAGKMTLSYSPVDLRSFIEEIANIFRTQVENKGLSFILDYAPA 902 Query: 694 I-PRILADLRSVKQIALNILSNAIHFTPSG--GQIIISTTHTSNEEV--ILRVRDTGVGM 748 + P + D ++Q+ N++ NAI FT G + T HT +V + V DTG+G+ Sbjct: 903 LPPTVEIDELRLRQVLFNLIGNAIKFTEQGHVKVQVRGTLHTEESKVDLTISVEDTGIGI 962 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 E E + F Q + GTGLGL ++K +V+ G + S KGT + Sbjct: 963 RPEEREAIFQSFHQSSGQDSRKYGGTGLGLTISKRLVEMMGGTISVESEYGKGTTFTVRI 1022 Query: 809 P 809 P Sbjct: 1023 P 1023 >gi|332526490|ref|ZP_08402602.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332110758|gb|EGJ10935.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 669 Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 99/373 (26%), Positives = 186/373 (49%), Gaps = 20/373 (5%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY--PVEDILRKPFT 498 R + ++ ++ Q +L +DG +++ +G I+ N A + + G P + L P T Sbjct: 215 RALQHQLALQTRQFDEVLRRMADGAGVVDADGRIVVCNPAWAAMLGAAGPAQ-ALGLPAT 273 Query: 499 VFLEQNTPSVMNHYLTEILSL---DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-Y 554 +L + + + L + +L DL +L + G+ E S + + + Sbjct: 274 AWLAEPSWDTLAARLAQAGTLPAEDL--SLRRADGGTLATEA--SFAVFARADAGAPARV 329 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L + D+S ++ + L A++ AE + KSDFLA +SHEIRTP+ AI+G + + Sbjct: 330 QLVLRDVSARRETERTLVAAREAAEAATRAKSDFLANMSHEIRTPMNAILGMTALALRTE 389 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 +PR +Y + +L IVN +LD SKIE+G++ L + LD + ++ Sbjct: 390 L----DPRQRDYLEKTRAAAQSLLGIVNVILDFSKIEAGRLELEHDEFELDAVLDGVAAI 445 Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 V L A+++ + + +P R++ D + Q+ +N+ NA+ F+ G ++ + Sbjct: 446 VALQAHDRGLGFLLDVSEQVPRRLVGDALRLSQVLVNLCGNAVKFSERGEVLVRVEALDA 505 Query: 734 NEEVILRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + + R+R D G+G++ +LE+ +PF Q+ S R GTGLGL +++ +V A Sbjct: 506 ADPHLQRLRFVVHDEGIGLSPQDLERLFRPFSQVDASTTRRYGGTGLGLAISRQLVQAMG 565 Query: 790 GKFYIFSTPAKGT 802 G + S+P +G+ Sbjct: 566 GDIAVRSSPGRGS 578 >gi|150018231|ref|YP_001310485.1| integral membrane sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149904696|gb|ABR35529.1| integral membrane sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 748 Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 84/244 (34%), Positives = 134/244 (54%), Gaps = 9/244 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L +AK AEK + KS+FLA +SHEIRTPL A+IGFSE++KN + + ++ Y Sbjct: 427 ELKYAKIEAEKANEAKSEFLANMSHEIRTPLNAVIGFSELLKN----TIKDEKHKSYIET 482 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+ +GN +L I+ND+LD+SKIE+G++ L ++P+ L E + + K I Sbjct: 483 INVAGNSLLTIINDILDLSKIEAGRIELQYKPLKLSNIFREIKYIFKQKTKSKNIEFLLD 542 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEEVI---LRVRDT 744 + IL D ++QI LN++ NA+ FT G ++ + T + N+ + + + DT Sbjct: 543 IQEDFDESILLDEVRIRQILLNLVGNAVKFTDKGYVKLSLKGTTSQNKSSVDFRISIEDT 602 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ E EK F Q + GTGLGL + K + + GK ++ S KG+ Sbjct: 603 GIGIAEGEREKIFDAFKQASGQSIKKFGGTGLGLSITKKLTEIMQGKIFVESIEGKGSTF 662 Query: 805 EIIF 808 + F Sbjct: 663 YVEF 666 >gi|86609102|ref|YP_477864.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557644|gb|ABD02601.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 1442 Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 113/391 (28%), Positives = 192/391 (49%), Gaps = 28/391 (7%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE- 502 ++ E E+ Q S+ D + I + +G NRA GY ++++ +PF ++ Sbjct: 682 RKSAEAELEQFFSV---ALDLLCIADAQGYFRRLNRAWETTLGYSLQELQSRPFLEWVHP 738 Query: 503 QNTPSVMN--HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 ++ P+ L E LD + GS + + R + S + D Sbjct: 739 EDVPATQAAMQQLIEEKRLDHFVNRYRTQDGSYR---FIEWRASLA----GSLFYAAGRD 791 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+ K + ++ AK+ AE S KS+FLA +SHEIRTP+ AI+G + ++ + + Sbjct: 792 ITVAKLAEEQMKAAKEAAEAASRAKSEFLATISHEIRTPINAILGMTSLLLDTSL----D 847 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P+ ++ I G ++L+++ND+LD SKIES K+ L P SL + V E + L+ A Sbjct: 848 PQQQDWVQTIRYGGEVLLNLINDILDFSKIESQKLELEEIPFSLPQLVEELLDLMAAQAQ 907 Query: 681 EKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 K + L+ + P ++ D ++QI N+LSNAI FTP G ++ + E Sbjct: 908 SKDLELVAWVDPSLPPTLIGDPNRLRQILANLLSNAIKFTPQGEVVVTVEAGERDPEKQW 967 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V ++VRDTG+G+ +L++ KPF Q+ +S + GTGLGL +++ + G + S Sbjct: 968 VNVQVRDTGIGIPPEKLDRLFKPFSQVDSSISRQFGGTGLGLAISQRLCQLMGGAIGVES 1027 Query: 797 TPAKGTLIEIIFP-------LYDTSHPHDCI 820 P +G+ P L T+ P C+ Sbjct: 1028 QPGQGSTFRFRIPLKRPDQELLPTAAPDPCL 1058 >gi|303246258|ref|ZP_07332538.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492321|gb|EFL52193.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 1229 Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 101/356 (28%), Positives = 170/356 (47%), Gaps = 25/356 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL--EQNTPSVMNHYL 513 ++E + D I + +G++ + ++LFG P ++ K F+ + P Sbjct: 368 GLVETSPDLIWETDMDGVVTYASPRAAELFGEPPNALVGKKMAQFIPPAGDAPE------ 421 Query: 514 TEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNK 570 D +T E G+ + K L + + ++ P DI+E K + Sbjct: 422 ------DTPETWEATLPGAGEGGGKALEVSCVPRRTPEGEALGRRGVARDITERKNAQCL 475 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A++ A + + KS+FLAR+SHEIRTPL A+IG S + PR +Y I Sbjct: 476 LDAARQEAVRANQAKSEFLARMSHEIRTPLNAVIGMSHLALKTEL----TPRQEDYLTKI 531 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 S + +L ++ND+LD SKIE+G+ + P LD + + ++ A EK++ S Sbjct: 532 RSSADTLLAVINDILDYSKIEAGRFVIERIPFDLDAVLGNVVDIMGPGAAEKQLEFLLSV 591 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGV 746 +++P ++ D + Q+ LN++ NA+ FT SG ++ + + LR VRDTG+ Sbjct: 592 GDDVPSWLVGDPLRLGQVLLNLVGNAVKFTDSGEVLVEVRLEKAVADAARLRFAVRDTGI 651 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GMT + +PF Q S R GTGLGL + +V+ G + S +G+ Sbjct: 652 GMTPEQKHNLFRPFAQADGSISRRYGGTGLGLSICHRLVELMGGNLAVESVSGQGS 707 >gi|297529109|ref|YP_003670384.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] gi|297252361|gb|ADI25807.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] Length = 582 Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 102/366 (27%), Positives = 180/366 (49%), Gaps = 22/366 (6%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 R EI+ +L +++E G+ I+ G I NRA F D L +P+ L Sbjct: 234 RAREIQTDRLHTLIENVGSGLLFIDHRGHISLINRAFQTQFHLDPSDCLHRPYADVLPHG 293 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 D+ + ++ I + T + + L I I++ F + + +EW Sbjct: 294 ---------------DIVRFIDDIFITETTMRRHMRLTIGIERKHFDVYGAPIIGTNAEW 338 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K ++ E K DF+A VSHE++TP+T+I GF+E + + G + + + Sbjct: 339 KGIVVVFHDITELKRLEQIRK-DFVANVSHELKTPVTSIKGFAETLLD---GAMKDEAAL 394 Query: 625 E-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 E + I + + +V +LLD+SKIE L E V + + ++EA ++ + A EK+ Sbjct: 395 EHFLTIILKESERLQTLVEELLDLSKIEQHGFQLQLEDVDIAQVIAEAAAVFRQKAAEKQ 454 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 I + + + I D +KQI LN+L+NAI +TP G++ + +EV++ V+D Sbjct: 455 IDLHIESPSGLV-IRGDRNRMKQILLNLLANAITYTPEHGRVAVEAEE-REKEVLIHVKD 512 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ E+ + + F ++ ++ GTGLGL + K +V+A+ G + S +GT+ Sbjct: 513 TGIGIEEKEIPRIFERFYRVDKARSRDSGGTGLGLAIVKHLVEAHHGYITVASKVGRGTV 572 Query: 804 IEIIFP 809 I FP Sbjct: 573 FTIHFP 578 >gi|169334065|ref|ZP_02861258.1| hypothetical protein ANASTE_00458 [Anaerofustis stercorihominis DSM 17244] gi|169258782|gb|EDS72748.1| hypothetical protein ANASTE_00458 [Anaerofustis stercorihominis DSM 17244] Length = 734 Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 89/266 (33%), Positives = 148/266 (55%), Gaps = 14/266 (5%) Query: 555 SLTMHDISEWKQEK----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 ++T+ ++S+ K E+ L A ++A ++ K+DFL+ +SH+IRTP+ AI+G + + Sbjct: 440 TVTIRNVSDIKVEQEAHNQALKDAYEMARNANNAKTDFLSSMSHDIRTPMNAIMGMTVIA 499 Query: 611 KNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 KN + N +E + I+ S N +LD++ND+LD+SKIESGK+ L+ EP+ LD + Sbjct: 500 KNNK----DNVEKLEDCLDKIETSSNHLLDLINDVLDMSKIESGKVTLNEEPLDLDSIID 555 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 + ++++ A +K I ++ + N + D+ + QI LNILSN++ FTP G I I Sbjct: 556 DVLNIILPTARDKHITVKLNKEINHAFVQGDVLRINQIFLNILSNSVKFTPKNGNIQIFI 615 Query: 730 THTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + E + D G+GM+ +K PF + S EGTGLG+ + K + Sbjct: 616 REITPEYKNYISYEFKFIDNGIGMSEEFKDKIFTPFARSEESIIKNVEGTGLGMSIVKNI 675 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810 VD G+ Y+ S KG+ +I L Sbjct: 676 VDMMNGEIYVKSKINKGSEFTVILHL 701 >gi|156974495|ref|YP_001445401.1| Signal transduction histidine kinase [Vibrio harveyi ATCC BAA-1116] gi|156526089|gb|ABU71175.1| hypothetical protein VIBHAR_02212 [Vibrio harveyi ATCC BAA-1116] Length = 1054 Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 137/251 (54%), Gaps = 15/251 (5%) Query: 563 EWKQEKNKLSHAKKIAE-------KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 E +Q K KL+ AK+ AE K S KS FLA +SHEIRTPL +IG SEV+ + Sbjct: 367 EREQAKVKLTQAKEDAEQAKDDAIKASKAKSSFLANMSHEIRTPLNGVIGISEVLSDTSL 426 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 +Y + I+ S L+L ++ND+LD SKIESG + + + E++ + S+V Sbjct: 427 TATQK----DYVDTIETSSQLLLSLINDILDFSKIESGMLLISPHSTCVRESIYDIASIV 482 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--- 731 A EK I ++ S + N P R++ D ++Q+ +N +SNA+ FT G + TTH Sbjct: 483 SPKAKEKGINLKVSISRNTPYRLMIDDHRLRQVIMNFMSNAVKFTEKGSVHLSVTTHGVS 542 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 +N + V+D+G+G+ + + +PF Q NS + GTGLGL ++ +V+ GK Sbjct: 543 GANAVMEFSVQDSGIGIDEQQQKNIFEPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGK 602 Query: 792 FYIFSTPAKGT 802 + S G+ Sbjct: 603 IQLESEKEHGS 613 >gi|83816271|ref|YP_444615.1| sensory histidine protein kinase [Salinibacter ruber DSM 13855] gi|83757665|gb|ABC45778.1| sensory histidine protein kinase [Salinibacter ruber DSM 13855] Length = 2002 Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 91/299 (30%), Positives = 154/299 (51%), Gaps = 14/299 (4%) Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577 +L+ QT +I +G + L + ++ + ++ + DI+E +++ +L AKK Sbjct: 1694 ALEGEQTDRRIGVGG----RTLRVHVVPLQGDTNAKGLMLAQDITENVRKERELMSAKKA 1749 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-------EYANYI 630 AE+ + KS LA +SHEIRTPLT+I+GF+E+I+ + G L P E+A I Sbjct: 1750 AEEANRMKSSLLANMSHEIRTPLTSILGFAEMIEEE-IGSLEPPAEAGDLKPLGEFAGLI 1808 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 +SG ++D + +L++S++E+G+M+L EPV L E E ++ A + + ++ Sbjct: 1809 QKSGQRLMDTLTGVLNLSRLEAGEMDLAAEPVDLSEQAREVAGELRPQAEAEGLRLQVQA 1868 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 AD V+ + N++SNAI +T G I + N ++ V D+G+GM Sbjct: 1869 GGEPIWAQADGGGVQIVLRNLVSNAIKYTDDGE--IRLRVYRENGSAMIEVEDSGIGMDP 1926 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++E KPF Q EGTGLGL + + V+ G + + KGT I + P Sbjct: 1927 EKIEDLFKPFRQASEGMAREYEGTGLGLAVTREAVEQMDGSIEVETEKGKGTTIRVQLP 1985 >gi|319427233|gb|ADV55307.1| hybrid periplasmic sensor histidine kinase, BarA [Shewanella putrefaciens 200] Length = 933 Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 93/246 (37%), Positives = 140/246 (56%), Gaps = 10/246 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A + S KS+FLA +SHE+RTPL +IGF+ +++K PL + + ++Y N Sbjct: 284 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKT----PLHSSQ-VDYIN 338 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS +L I+ND+LD SK+E+GKM L P L E + + ++L+ A K + + Sbjct: 339 TIERSATNLLAIINDILDFSKLEAGKMVLENMPFGLRETLGDTMTLISGSAQAKGLELVV 398 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDT 744 A N+P + D V QI N++ NAI FT SG ++ + S E+VILR V DT Sbjct: 399 DIAPNVPDHVNGDAMRVCQIINNLVGNAIKFTDSGSVLVKLELQSQSEEQVILRCDVIDT 458 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + + FGQ +S R GTGLGL + K +V+ G+ S+ KG+ Sbjct: 459 GIGIDESQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSVDKGSNF 518 Query: 805 EIIFPL 810 PL Sbjct: 519 WFTLPL 524 >gi|83313245|ref|YP_423509.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82948086|dbj|BAE52950.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 1258 Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 114/419 (27%), Positives = 206/419 (49%), Gaps = 35/419 (8%) Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINKRKMEIEVM--QLCS-------IL 458 LAM+ E+ + + + ++ + + ++ RK E+E + QL IL Sbjct: 420 LAMSLEILERGAKTAALLEETRVQAATLAASERQVAARKEELEAINGQLAEAEERSRLIL 479 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 + +GI + ++G + N A +++ GY +++I+ KP P + E S Sbjct: 480 GSVDEGICGLAQDGTMSFVNPAGARMLGYGLDEIVGKPLHALAHHTYPD-GTPFPRECCS 538 Query: 519 LDL-------RQTLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568 + L R ++++ G++ + + ++ + +T DI+E K+ Sbjct: 539 MFLTSQDGQPRTEVDEVLWRKDGTSFPVEYSTTPVLKDGTVVGTV--VTFRDITERKRAD 596 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 L A AE S K+DFLA +SHEIRTP+ AIIG S + NPR +Y Sbjct: 597 ALLHQALDRAEAASQAKADFLANMSHEIRTPMNAIIGMSHLALKTEL----NPRQRDYVR 652 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +SG +L I+ND+LD SKIE+GK+++ V LD + +L+ K + + Sbjct: 653 KIQQSGQHLLGIINDILDFSKIEAGKLSVEKTAVHLDTVLDNVANLISEKTIAKGLELIF 712 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--EEVILR--VRD 743 A+++P ++ D + QI +N +NA+ FT + G+I+++ + E V LR VRD Sbjct: 713 DVASDVPNDMVGDPLRLGQILINYANNAVKFTET-GEIVVAVRLAEDLGEAVRLRFEVRD 771 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TG+G++ ++ + + F Q S + GTGLGL +++ + + G+ + S P +G+ Sbjct: 772 TGIGLSAEQMGRLFQSFQQADTSTTRKYGGTGLGLAISRKLAELMDGEVGVESQPGRGS 830 >gi|300867853|ref|ZP_07112495.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300334184|emb|CBN57671.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1145 Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 113/391 (28%), Positives = 189/391 (48%), Gaps = 40/391 (10%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 SI E T++G+ + EG LS N A+++++GY + LR+ + Q V H E Sbjct: 752 SIFENTAEGLFQTSLEGHFLSANPALARIYGYSSPEELRELVSDIKSQ--VYVDPHRRDE 809 Query: 516 ILSLDLRQT----LEKITLGSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEKN 569 + L +++ E + +S +R ++ + Y ++ DIS+ K ++ Sbjct: 810 LTRLIIQRGAVSGFESQVYRADGSIIWISENVRSVLDRDGNVLYYEGSIEDISDRKHFES 869 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 L AK+ AE S KS FLA +SHE+RTPL AIIG+SE+++ + LG + Sbjct: 870 VLQLAKEAAEAASMAKSSFLANMSHELRTPLNAIIGYSEMLQEET-EDLGYQELTPDLHK 928 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG +L ++ND+LDISKIE+G+M+L+ E S+D+ + + + + A + ++ Sbjct: 929 IHISGKHLLSLINDILDISKIEAGRMDLYLETFSVDDLIDDVAATAKPLAEKNGNILEVI 988 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--------------- 734 ++I + AD+ V+QI LN+LSNA FT +G + + + Sbjct: 989 KNSDIDTMHADITKVRQILLNLLSNAAKFTHNGKITLAVSREIAAIDAEESMTTAEVIID 1048 Query: 735 ----------------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 E +I DTG+GMT+ +L++ +PF Q S + GTGLGL Sbjct: 1049 NQSNINNNNSSAISNFECLIFNCTDTGIGMTSEQLQQIFQPFTQGDASTTRKYGGTGLGL 1108 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ GK + S G+ + P Sbjct: 1109 AISHCFCQMMGGKIAVESQIGIGSTFSVKLP 1139 >gi|258514826|ref|YP_003191048.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257778531|gb|ACV62425.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 531 Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 83/259 (32%), Positives = 142/259 (54%), Gaps = 2/259 (0%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 IS K ++ L+ + ++ K +FLA SHE+R+PLTA+I F+E++ ++ G L + Sbjct: 274 ISTLKSQREMLAETNRQLQETDRIKDEFLANTSHELRSPLTAVIAFTELLMDESSGELND 333 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + +Y + I+ SG +L ++N LD+SKI +GK L+ E +DE + + ++ N Sbjct: 334 LQR-DYVHEINDSGRELLGMINGFLDLSKIAAGKTFLYREHFKIDELIEDIFLRMRHLFN 392 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII-STTHTSNEEVIL 739 K I + + N + AD Q+ N+LSNA+ FT +GG++++ S + S +VI+ Sbjct: 393 NKGITLEVARNKNQLPVWADRGKTGQVLTNLLSNALKFTTTGGKVVVESNSGDSGRDVII 452 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 VRDTG+G+ + EK +PF Q+ + G G+GL LAK +V+ + G + S Sbjct: 453 TVRDTGIGIDIRDQEKIFQPFYQVDGTSTRNYGGMGIGLNLAKKLVELHGGTIRVSSQQN 512 Query: 800 KGTLIEIIFPLYDTSHPHD 818 G++ P +T D Sbjct: 513 AGSIFTFTLPTEETGDLRD 531 >gi|120598068|ref|YP_962642.1| hybrid sensory histidine kinase BarA [Shewanella sp. W3-18-1] gi|146293861|ref|YP_001184285.1| hybrid sensory histidine kinase BarA [Shewanella putrefaciens CN-32] gi|120558161|gb|ABM24088.1| Hpt sensor hybrid histidine kinase [Shewanella sp. W3-18-1] gi|145565551|gb|ABP76486.1| Hpt sensor hybrid histidine kinase [Shewanella putrefaciens CN-32] Length = 933 Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 93/246 (37%), Positives = 140/246 (56%), Gaps = 10/246 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A + S KS+FLA +SHE+RTPL +IGF+ +++K PL + + ++Y N Sbjct: 284 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKT----PLHSSQ-VDYIN 338 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS +L I+ND+LD SK+E+GKM L P L E + + ++L+ A K + + Sbjct: 339 TIERSATNLLAIINDILDFSKLEAGKMVLENMPFGLRETLGDTMTLISGSAQAKGLELVV 398 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDT 744 A N+P + D V QI N++ NAI FT SG ++ + S E+VILR V DT Sbjct: 399 DIAPNVPDHVNGDAMRVCQIINNLVGNAIKFTDSGSVLVKLELQSQSEEQVILRCDVIDT 458 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + + FGQ +S R GTGLGL + K +V+ G+ S+ KG+ Sbjct: 459 GIGIDESQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSVDKGSNF 518 Query: 805 EIIFPL 810 PL Sbjct: 519 WFTLPL 524 >gi|307546290|ref|YP_003898769.1| signal transduction histidine kinase [Halomonas elongata DSM 2581] gi|307218314|emb|CBV43584.1| signal transduction histidine kinase [Halomonas elongata DSM 2581] Length = 725 Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 91/234 (38%), Positives = 133/234 (56%), Gaps = 6/234 (2%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE S KS+FLA VSHEIRTPL +IG SE++ P G R+ YA+ I S + Sbjct: 223 AESASQAKSEFLATVSHEIRTPLNGVIGMSELLSEHHL-PDG-ARH--YADTIHDSAQRL 278 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696 L+++ND+LD SKIE+G+++L +SL E V+ A+SL +A K I + +P Sbjct: 279 LELINDILDFSKIEAGRLDLETRSLSLSELVNGALSLFAPHAEAKGIHLVAWIDPALPTH 338 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 I++D ++QI LN+LSNAI FT G++ +S + E+ + V DTG G+ + Sbjct: 339 IVSDPGRLRQILLNLLSNAIKFTER-GEVRVSAFVADDGELGIDVVDTGCGIDEQRQAQL 397 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +PF Q S R GTGLGL + K +V+A G+ + S P G+ + PL Sbjct: 398 FEPFRQGDPSTARRFGGTGLGLAICKRLVEALRGRIGMESQPHLGSRCWVRLPL 451 >gi|262394408|ref|YP_003286262.1| hypothetical protein VEA_003637 [Vibrio sp. Ex25] gi|262338002|gb|ACY51797.1| hypothetical protein VEA_003637 [Vibrio sp. Ex25] Length = 1055 Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 140/251 (55%), Gaps = 15/251 (5%) Query: 563 EWKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 E +Q + KL+ AK+ AEK S KS FLA +SHEIRTPL +IG SEV+ + Sbjct: 370 EREQSRQKLTQAKEDAEKAKDDAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLSD--- 426 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 PL + +Y + I+ S L+L ++ND+LD SKIESG + + + E++ + S++ Sbjct: 427 TPLTATQR-DYVDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASII 485 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS 733 A EK I ++ S + N P ++ D ++QI +N +SNA+ FT G ++ + T Sbjct: 486 SPKAKEKGIDVQVSISRNTPYHVMLDDHRIRQIIMNFMSNAVKFTEQGCVELSVITREIK 545 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 N E + V+D+G+G+ + +K PF Q NS + GTGLGL ++ +V+ G+ Sbjct: 546 NGEASIEFSVKDSGIGIDEQQQKKIFAPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGE 605 Query: 792 FYIFSTPAKGT 802 + S KG+ Sbjct: 606 IQLESEKGKGS 616 >gi|209523774|ref|ZP_03272327.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209495806|gb|EDZ96108.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 885 Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 109/365 (29%), Positives = 188/365 (51%), Gaps = 34/365 (9%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 ++ + D + + G N A ++ GY E++L +P + + Sbjct: 284 IDKSRDYVLFSDINGRFFYVNEAACQILGYSKEELLTMEVGDIDPLASPGGWS------I 337 Query: 518 SLDLRQTLEKITLGST---KEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNK 570 S D + T ST K + +++ I + L ++ C + DI + KQ + Sbjct: 338 SWDDLRDQGSFTFESTHYTKTGQAIAVEITLSHLEYNHREYGCA--VVRDIRDRKQTEIA 395 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY--IEYAN 628 L AK+ AE S KS+FLAR+SHE+RTPL AI+GF+++++ + + P + E+ Sbjct: 396 LQQAKEAAETASRAKSEFLARMSHELRTPLNAILGFTQLMERELYHNPNIPLFDHKEHLE 455 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQLYANEKRIL 685 I RSG +L+++ND+L++SKIE+G+++L +F +SL ++ E +++L A+ K++ Sbjct: 456 IIGRSGEHLLELINDVLEMSKIEAGRVSLNPTNFNLISLLNSLRE---MLELPASSKKLT 512 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRV 741 + + + IP I AD + ++Q +N+L NAI FT GG I+ N ++ V Sbjct: 513 LDFAIDDQIPTYIYADEQKLRQCLINLLGNAIKFTVKGGVILRVKLGKFNHDFGQLWFEV 572 Query: 742 RDTGVGMTNYELEKAMKPFGQIP---NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 DTG G+ E++ +PF Q NSQQ GTGLGL + + + G+ + S Sbjct: 573 EDTGPGIDPSEMDLLFEPFSQTETGRNSQQ----GTGLGLSITQKFIGLMGGEIQVSSER 628 Query: 799 AKGTL 803 KGT+ Sbjct: 629 GKGTI 633 >gi|149174846|ref|ZP_01853470.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] gi|148846183|gb|EDL60522.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] Length = 788 Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 85/233 (36%), Positives = 142/233 (60%), Gaps = 8/233 (3%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A++ AEK S KS FLA +SHEIRTP+TAI+GF+E++K + +P + + I ++ Sbjct: 384 AQQDAEKASHIKSSFLANMSHEIRTPMTAILGFAEIMKQRN----DDPEMSRHIDTIRKN 439 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +L+++ND+LD+SKIE+ K+ + SL E + + +L+++ A ++ + + + Sbjct: 440 GEYLLELINDILDVSKIEADKLEVEAIHCSLIELLDDVKTLMEIRAIDRGLDLSVKIDGS 499 Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHT-SNEEVI-LRVRDTGVGMT 749 IPR I +D ++QI +N+LSNAI FT G Q+I++ + +NE VI V D+G+GMT Sbjct: 500 IPRWIQSDPVRLRQILINLLSNAIKFTRQGHVQLIVTASSIDTNEPVIQFDVIDSGIGMT 559 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + ++ + +PF Q +S + GTGLGL + K + G+ + S GT Sbjct: 560 DEQISRLFQPFMQADSSTTRQYGGTGLGLTICKRLTHILGGEISVNSEYGNGT 612 >gi|254228337|ref|ZP_04921764.1| response regulator receiver domain protein [Vibrio sp. Ex25] gi|151939143|gb|EDN57974.1| response regulator receiver domain protein [Vibrio sp. Ex25] Length = 1059 Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 140/251 (55%), Gaps = 15/251 (5%) Query: 563 EWKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 E +Q + KL+ AK+ AEK S KS FLA +SHEIRTPL +IG SEV+ + Sbjct: 374 EREQSRQKLTQAKEDAEKAKDDAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLSD--- 430 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 PL + +Y + I+ S L+L ++ND+LD SKIESG + + + E++ + S++ Sbjct: 431 TPLTATQR-DYVDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASII 489 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS 733 A EK I ++ S + N P ++ D ++QI +N +SNA+ FT G ++ + T Sbjct: 490 SPKAKEKGIDVQVSISRNTPYHVMLDDHRIRQIIMNFMSNAVKFTEQGCVELSVITREIK 549 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 N E + V+D+G+G+ + +K PF Q NS + GTGLGL ++ +V+ G+ Sbjct: 550 NGEASIEFSVKDSGIGIDEQQQKKIFAPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGE 609 Query: 792 FYIFSTPAKGT 802 + S KG+ Sbjct: 610 IQLESEKGKGS 620 >gi|220906813|ref|YP_002482124.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219863424|gb|ACL43763.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1977 Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 88/277 (31%), Positives = 144/277 (51%), Gaps = 44/277 (15%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 KL+HA ++ K +FLA +SHE+RTPL AI+G +E + + FG + N + + Sbjct: 1561 QKLAHATRL-------KDEFLANMSHELRTPLNAILGMTEGLTDVIFGSI-NTQQKKALQ 1612 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 IDRS + +L+++ND+LD++KIESG++ L+ S+ ++S ++ A K I + Sbjct: 1613 TIDRSAHHLLELINDILDVAKIESGQIELNCAATSVLLLCQSSLSFIKQQALRKNIHLEV 1672 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------------------ 730 ++P + D R ++Q+ +N+L+NA+ FTP GG + +S Sbjct: 1673 QIPPHVPDVWVDERRIRQVLINLLNNAVKFTPEGGSVTLSVQRQLIVQDPPPLQGITKVR 1732 Query: 731 --------------HTSNEEV--ILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 TS EV LR V DTG+G+ ++ L K +PF QI ++ + Sbjct: 1733 VHRTPIEQQLGIQLQTSQFEVHNYLRIAVTDTGIGIPSHYLHKLFQPFVQIDSALNRQYT 1792 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL L K +V+ + G+ + ST G+ I P Sbjct: 1793 GTGLGLALVKRIVELHGGEVGVTSTEGAGSCFTIDLP 1829 >gi|281356981|ref|ZP_06243471.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] gi|281316539|gb|EFB00563.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] Length = 1816 Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 89/259 (34%), Positives = 144/259 (55%), Gaps = 13/259 (5%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 TM DI+E+ Q + KL+ A A+ S KS FLA +SHE+RTPL A+IGFSE+++N Sbjct: 1409 TMLDITEFNQIQQKLTRAVLDAQNASKAKSYFLATMSHELRTPLNAVIGFSELLRND--- 1465 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L EY I+ +GN +L ++ND+LD+SKIE+G++ + E E S+ + Sbjct: 1466 TLPRSEQNEYLQSINFAGNALLKLINDILDLSKIEAGQIVITPERNDFQALCREIYSIFR 1525 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE 735 L A EK++ +P + D ++QI LN+ NA+ FT +G +I+I S+E Sbjct: 1526 LQAAEKKLEFTLECDPELPYLYLDNLRLRQILLNLTGNAMKFTKAGSIRIVIDFRPESDE 1585 Query: 736 E--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG----EGTGLGLPLAKAMVDANM 789 + +RV DTG+G++ + +PF Q ++RG +GTGLGL ++ ++ Sbjct: 1586 AGTLTIRVIDTGIGISEQGQKTIFEPFVQ---DHEVRGSHAYQGTGLGLTISSRLIGQMG 1642 Query: 790 GKFYIFSTPAKGTLIEIIF 808 G+ + S +G+ +I Sbjct: 1643 GRMALDSKVGEGSCFTVIL 1661 >gi|119899974|ref|YP_935187.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72] gi|119672387|emb|CAL96301.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72] Length = 1208 Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 111/422 (26%), Positives = 201/422 (47%), Gaps = 29/422 (6%) Query: 411 LAMTFIPFEKANQFPE---NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 ++ T +P A+ PE ++ + E +D++ R+ ++ E++ LE+ I + Sbjct: 383 VSATIVPLPDADGVPERFISIRTDITERKDIEARLAEQLHFTELL-----LESIPTAIYL 437 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 + +G L NRA +++G E + + + +M+ E+L Q+ E Sbjct: 438 KDADGRYLRFNRAFEEMYGIDREKWYGRRVLELVPGDEGRLMHKKDLELLQEGGHQSYEA 497 Query: 528 ITL----GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + G ++ R+ + + DI++ K+ + +L A+++AE S Sbjct: 498 RIVNRRTGQHRDGLFWKARLTRADGTVTGLVGAVI-DITDRKRVEQELESARQLAEAASQ 556 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KSDFLA +SHEIRTP+ IIG +E+ + R +P +Y N + S +L IVND Sbjct: 557 AKSDFLANMSHEIRTPMNGIIGMTELALDTRL----DPTQRDYLNIVLSSAESLLVIVND 612 Query: 644 LLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA- 699 +LD SKIE+GK+ + F P AV+EA+ + A K++ + ++P ++A Sbjct: 613 ILDFSKIEAGKLAIEEIDFNPAV---AVTEALKSISTRAERKKLRFAYELSPDLPAVVAG 669 Query: 700 DLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVI--LRVRDTGVGMTNYELE 754 D ++Q+ N+ NA+ FT +G ++ + + +I V DTG+G+ + Sbjct: 670 DSGRIRQVLTNLCDNALKFTKAGEIAVRVRAEPSAAGGDALIAHFEVSDTGIGIDPEQQA 729 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + + F Q S R GTGLGL ++ +V G+ ++ STP G+ L + Sbjct: 730 QIFEAFTQADTSTTRRFGGTGLGLTISARLVGLMGGRIWVDSTPGVGSTFHFTVRLKRRA 789 Query: 815 HP 816 P Sbjct: 790 EP 791 >gi|309792210|ref|ZP_07686682.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308225751|gb|EFO79507.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 921 Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 87/263 (33%), Positives = 137/263 (52%), Gaps = 11/263 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I +W+ N L AE + KS FLA +SHEIRTPL A+IG + +++ R L Sbjct: 409 IQQWEM-ANALRARNDAAEAATRAKSAFLANMSHEIRTPLNAVIGMAALLQESR---LDQ 464 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + I + + I G +L +++D+LD S+IESG++ L L + + LV A Sbjct: 465 EQRI-FVDTIRTGGEALLAVISDILDFSRIESGQLELELAAFDLHHYLKTTVDLVAHSAY 523 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NE 735 K + + A ++P+I+ D ++QI LN+L NA+ FT G + T H Sbjct: 524 TKNLAMTCHIAPDVPQIVQGDAARLRQILLNLLGNAVKFTSQGEVALEVTLHDQPNPDGV 583 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 E+ +VRDTG+GM+ +LE+ PF Q +S R GTGLGL +++ +V G Sbjct: 584 EITFQVRDTGIGMSAEQLERVFAPFVQADSSTARRYGGTGLGLAISQQLVHLMGGTISAT 643 Query: 796 STPAKGTLIEIIFPLYDTSHPHD 818 S+ G++ + P + +HP D Sbjct: 644 SSLGHGSIFSLNLP-FTHAHPAD 665 >gi|295705734|ref|YP_003598809.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium DSM 319] gi|294803393|gb|ADF40459.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium DSM 319] Length = 995 Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 91/258 (35%), Positives = 143/258 (55%), Gaps = 10/258 (3%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y DI+E K+ + + AK+ AEK + KS FL+++SHE+RTPL I+GF+++++ Sbjct: 238 YLWEFEDITEQKKMERVIVQAKEEAEKVNMAKSSFLSKMSHELRTPLNGILGFAQLLE-- 295 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 N + ++ I G+ +L ++ND+LD+S+IE+G + + E V L + E I+ Sbjct: 296 -MDESLNEQQHDFVQEILSGGSHLLSLINDILDVSRIETGNLKISVEEVHLLTVIKECIN 354 Query: 674 LVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +VQ A +K I I + +LAD +KQI LN+L NAI + G++I+ Sbjct: 355 IVQPLAKKKNISIYSQLDQWEDMMVLADPIRLKQILLNLLDNAIKYNQENGKVIVFCRLQ 414 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 N++ I + DTGVG + E K PF +I N+++ EGTG+GL L K +V G Sbjct: 415 ENKQYI-HIVDTGVGFSVEEYTKVFVPFYRIENTKE---EGTGIGLSLVKQLVHLMGGDI 470 Query: 793 YIFSTPAKGTLIEIIFPL 810 + T KGT E F L Sbjct: 471 NV--TSNKGTGSEFCFSL 486 >gi|218437127|ref|YP_002375456.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218169855|gb|ACK68588.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 1927 Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 89/291 (30%), Positives = 162/291 (55%), Gaps = 14/291 (4%) Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 +IT S KE K + + + +KLP + ++ D++ KQ + +L AK++A+ + K Sbjct: 1380 QITTPSGKE-KWVRVSSVPQKLPDQTVIWNGVTIDLTVEKQREAELKQAKEVADLANRAK 1438 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 S+FLA +SHEIRTP+ AI+GF +++ + + + R Y + I +G +L ++ND+L Sbjct: 1439 SEFLANMSHEIRTPMNAILGFCDLLNH----LVTDNRGQFYLSAIASAGKTLLALINDIL 1494 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSV 704 D+SKIE+GK+ L++EPV+L + E + A EK+I + +++P I+ D + Sbjct: 1495 DLSKIEAGKLQLYYEPVNLPTLIQEIYQIFSQKAEEKQIKLLMEIDSSVPTGIIFDEVRL 1554 Query: 705 KQIALNILSNAIHFTPSG-GQIIISTTHTSNEE------VILRVRDTGVGMTNYELEKAM 757 +QI N++ NA+ FT G +I +++ H+ ++ + + + DTG+G+ + + Sbjct: 1555 RQILFNVVGNALKFTEEGYVKISLNSYHSETQDQEDSITLKITIEDTGIGIAPEQQTQIF 1614 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 F Q + GTGLGL + K + GK ++S P +G++ F Sbjct: 1615 DAFIQSDGQNNRKYGGTGLGLAITKRLTTILGGKIELYSQPNQGSIFSFTF 1665 >gi|42523313|ref|NP_968693.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39575519|emb|CAE79686.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 720 Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 86/264 (32%), Positives = 136/264 (51%), Gaps = 8/264 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L ++++E + L AK AE + KS FLA +SHEIRTPL I+GF+E+I Q Sbjct: 320 LAANNVTEQVMAERALQAAKSAAENANQAKSAFLANMSHEIRTPLGVILGFAEIIGTQDL 379 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 Y E I R+G + I++D+LD+SKIE+GK + PV L + + E +++ Sbjct: 380 DESERKNYFE---IIHRNGLSLTRIIDDILDLSKIEAGKFEIEKSPVKLKKLLQEVLTMF 436 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--- 731 A+ K I + P IL+D+ ++Q+ +N++ NAI FT G + Sbjct: 437 FDQASRKNIYLNYELGEIAPLIILSDVVRIRQVLVNLIGNAIKFTMKGSVKVSCRAEQVT 496 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + ++++ + DTG+GMT + E+ +PF Q + + GTGLGL L++ + A G Sbjct: 497 ATRKKIVFSIEDTGIGMTQEQAERLFQPFTQADATSTRQFGGTGLGLALSRNLARALGGD 556 Query: 792 FYIFST-PAKGTLIEIIFPLYDTS 814 I P +G E F D S Sbjct: 557 VSIVRCEPRQGCTFEFSFQAEDVS 580 >gi|193084072|gb|ACF09742.1| integral membrane sensor signal transduction histidine kinase [uncultured marine group III euryarchaeote AD1000-40-D7] Length = 752 Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 92/263 (34%), Positives = 143/263 (54%), Gaps = 10/263 (3%) Query: 554 YSLTMHDISE----WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 Y++ M+ + E +++K+ L A + A+ + KSDFLA +SHE+RTPL AIIG+SE+ Sbjct: 488 YNILMNSLEESDKIMRKQKDDLKIAMQKAQTANQAKSDFLANMSHELRTPLNAIIGYSEM 547 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + G Y E + I+ SG +L ++ND+LD+SKIE+GKM+LH E E + Sbjct: 548 LIEEADDD-GLDTYSEDLSKINSSGEHLLTLINDILDLSKIEAGKMDLHIEEFDFAELLK 606 Query: 670 --EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 EA + + N+ + +I+ ++ D ++QI N+LSNA FT G + + Sbjct: 607 QIEATAKPLVEKNKNKFIIKCQ--TKKLKLKNDQTKLRQILFNMLSNAAKFTKEG-MVTL 663 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + V DTG+GM +LEK + F Q +S GTGLGLP++K M + Sbjct: 664 QINPEKKNHLKFEVLDTGIGMNGKQLEKVFEEFTQAKSSTSKDYGGTGLGLPISKKMTEM 723 Query: 788 NMGKFYIFSTPAKGTLIEIIFPL 810 G+ + S KGT II P+ Sbjct: 724 MGGRMGVESKEGKGTTFSIIIPI 746 >gi|119483262|ref|ZP_01618676.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106] gi|119458029|gb|EAW39151.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106] Length = 1710 Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 87/255 (34%), Positives = 142/255 (55%), Gaps = 14/255 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ-RFGPLGNPRY 623 +Q +L K+ AE + KS FLA +SHE+RTPL AI+GF++++ Q +F G P Sbjct: 1226 RQRARELQREKEAAESANLAKSRFLANMSHELRTPLNAILGFTQLLLRQPQFS--GEPS- 1282 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 EY N I RSG +L ++ND+L +SK+E+G++ L +P L + ++ L A KR Sbjct: 1283 -EYLNIIHRSGKHLLGLINDILTLSKVEAGRIYLKTKPFDLSLLLKTLENMFSLKAANKR 1341 Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-------GQIIISTTHTSNE 735 + + N+PR ++ D + Q+ +N+LSNAI FT G Q + + +++ Sbjct: 1342 LQLEIKADANVPRGLIGDEDKLHQVLINLLSNAIKFTSFGEVCLTVRSQPVPAEMSSNSC 1401 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + VRDTG G+ ELEK +PF Q ++++ + TGLGL +++ V+ GK + Sbjct: 1402 YLQFEVRDTGAGINFDELEKIFEPFIQTEAGEKVK-QSTGLGLAISREFVELMGGKITVE 1460 Query: 796 STPAKGTLIEIIFPL 810 S G++ + PL Sbjct: 1461 SQLKHGSVFQFTIPL 1475 >gi|194333102|ref|YP_002014962.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM 271] gi|194310920|gb|ACF45315.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM 271] Length = 1040 Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 108/380 (28%), Positives = 189/380 (49%), Gaps = 30/380 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++L A D + ++++EG+ L + + P + + K + S + H + E Sbjct: 377 AMLNALPDMLFVLDKEGVCLDFHARNNNEPHPPAKQFIGKSLKEIFPEAHSSALQHLIHE 436 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM-HDISEWKQEKNKL--- 571 + S + + + + + +R++ P + +L + ++++ K+ +NKL Sbjct: 437 V-SESGAPKIHEYQMKRSGKTSHYEIRVV----PLGTDKTLNIVRNMTDQKETENKLLRT 491 Query: 572 --------SHAKKIAEKE---SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 AKK+AE+ S KS+FLA +SHEIRTP+ +IG + ++ Sbjct: 492 NRKLENASRKAKKLAEQAQEASKAKSEFLANISHEIRTPMNGVIGMTGLLLETDL----T 547 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P+ YA I S +LD++ND+LD+SKIE+GK+ L L E + + + + A Sbjct: 548 PQQHRYAGTIASSAQSLLDLINDILDVSKIEAGKLTLEILDFDLQELMDDFAASFAIQAE 607 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--NEEV 737 +K + S IP R+ D ++QI +NI NA+ FT S G+I I T S +++V Sbjct: 608 QKNLEFLCSIEPGIPTRLTGDPGRLRQILMNIAGNAVKFT-SKGEIAIYVTLDSDCDDQV 666 Query: 738 ILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +LR +RDTG+G+ +++ + F QI S + GTGLGL +AK +V+ G + Sbjct: 667 VLRFCIRDTGIGIAKEKIDTLFEKFTQIDASATRQYGGTGLGLSIAKDLVELMQGSIGVE 726 Query: 796 STPAKGTLIEIIFPLYDTSH 815 ST +G+L L +H Sbjct: 727 STVNQGSLFWFTAKLNRQTH 746 >gi|320159220|ref|YP_004191598.1| CheY-like receiver [Vibrio vulnificus MO6-24/O] gi|319934532|gb|ADV89395.1| CheY-like receiver [Vibrio vulnificus MO6-24/O] Length = 1320 Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 110/380 (28%), Positives = 188/380 (49%), Gaps = 35/380 (9%) Query: 444 KRKMEIEVMQLCS----ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFT 498 +RK E +V++ IL AT + + ++ +G L+ N S+L G + +I+ R P Sbjct: 451 QRKAEQKVLEQSQLNQEILNATPNPMYCLSAQGKYLTVNAKFSELTGLAMHEIVGRTPIE 510 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIKKLPFSSC 553 VF +Q +H+ T++ Q L + E L + +++ + F++ Sbjct: 511 VFSQQEA----SHHFTQV-----HQELSQEQCSKNYELSLFDSQGGCRDMLVCEASFNNS 561 Query: 554 YSLT------MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + D++E KQ +++L AK A+ S K DFLA +SHEIRTP+ AI+G + Sbjct: 562 QGRVSGIVGILLDLTERKQMESELREAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMA 621 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 + N +P +Y I+ S +L I+ND+LD SKIE+GK+++ SLDE Sbjct: 622 HLALNTEL----DPSQRKYLTRINESAKNLLGIINDILDFSKIEAGKLSVESIDFSLDEV 677 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII 726 +++ A EK I +P ++ D + Q+ +N+ NA+ FT G+I+ Sbjct: 678 FENLTNVISFKAQEKGIEFLLDIDPRVPVGLVGDPLRLGQVLVNLCGNAVKFTEK-GEIL 736 Query: 727 ISTT--HTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 +S S+++V LR V+DTG+G+ ++ F Q S GTGLGL ++K Sbjct: 737 VSVMPESQSSDDVTLRFSVKDTGIGIDKEKIADLFNAFSQADTSITREFGGTGLGLSISK 796 Query: 783 AMVDANMGKFYIFSTPAKGT 802 +V+ G+ + S G+ Sbjct: 797 QLVELMGGQLSVSSAVGMGS 816 >gi|288940464|ref|YP_003442704.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288895836|gb|ADC61672.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 963 Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 103/367 (28%), Positives = 179/367 (48%), Gaps = 37/367 (10%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL----------------RKPF 497 L +L A D + + + +G+ LS N +++ G V+ I+ R Sbjct: 459 LQCLLSAIPDAVWMKDPQGVFLSCNPEFAQMLGQDVDRIIGTSDDDYFPPEVAEAFRADD 518 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--KLLSLRIIIKKLPFSSCYS 555 E TP ++ + D R+ L + + E +LL + I + Sbjct: 519 RRAAESTTPIRCEEWIDYVS--DARRVLWATVKSAVRAEDGRLLGVLGIAR--------- 567 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 DI+ +L A+ A + S KS FLA +SHE+RTPL AIIGFS+++ Sbjct: 568 ----DITSQHTVLTELEEARNAALQASEAKSRFLAHMSHELRTPLNAIIGFSQMLDMGAL 623 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 PL + ++I SG +L+++ND+LD+++IESG+ L+ + + LD + E ++L Sbjct: 624 DPL-TAQQQTAVSHIRDSGRHLLELINDILDLARIESGQSELNLDAIPLDPLIDEVMALS 682 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A+ +RI I + + AD ++Q+ LN+ SNAI + GG++ I + E Sbjct: 683 RPAADGRRICIDRGGEAGL-HVYADRTRLRQVLLNLTSNAIKYNRLGGRVTID-VEPAGE 740 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V +RV DTG G+ E+ +PF ++ +++ EGTG+GL + K +++ G Sbjct: 741 WVRIRVSDTGAGIDESLREEIFQPFQRL-GAEKTAIEGTGIGLIICKHLIEVMGGSIDFD 799 Query: 796 STPAKGT 802 S P +G+ Sbjct: 800 SVPGQGS 806 >gi|86358747|ref|YP_470639.1| two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CFN 42] gi|86282849|gb|ABC91912.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CFN 42] Length = 1133 Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 135/255 (52%), Gaps = 8/255 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K + +L AE KS+FLA +SHEIRTP+ ++G +E++ Sbjct: 570 DVTELKSREEELRQLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNL---- 625 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + R + + I +SGN +L I+ND+LD SKI++G+M L L EAV + +L+ +A Sbjct: 626 DTRQKTFIDIIVKSGNALLTIINDILDFSKIDAGQMKLRKAAFDLVEAVEDVATLLSSHA 685 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEV 737 EK I + A ++P ++ D +QI N++ NA+ FT G + + + E+ Sbjct: 686 AEKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVGFQAAAGGEI 745 Query: 738 I--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 I +R+ DTG+G+ +L+ + F Q+ S R EGTGLGL + +VD G Sbjct: 746 IASIRIEDTGIGIPREKLDSVFEKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYINAE 805 Query: 796 STPAKGTLIEIIFPL 810 S +G++ + P Sbjct: 806 SEWGRGSVFTVNLPF 820 >gi|300867388|ref|ZP_07112044.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300334639|emb|CBN57212.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1120 Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 139/252 (55%), Gaps = 9/252 (3%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 N+L A++ A + S KS FLA +SHEIRTP+ ++G ++++ R PR EYA Sbjct: 398 NELVEAREAAIEASRVKSQFLANMSHEIRTPMNGVLGMAQLLL--RLSLEAKPR--EYAQ 453 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I RS +L ++ND+LD SKIE+G+M L LD + + +V A EK + + Sbjct: 454 TIYRSAEHLLSVINDILDFSKIEAGEMRLETLDFDLDVCIESMVEMVVATAEEKGLELNV 513 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST---THTSNEEVILRVRDT 744 +++PR L D +KQI LN+++NAI FT GQ+++ + T + ++I VRD+ Sbjct: 514 LIESSVPRQLQGDPGRLKQILLNLVNNAIKFTDR-GQVLVRVSLKSSTVDRKLIFSVRDS 572 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ +K + F Q+ S + GTGLGL + K +V+ G+ + ++ KG+ Sbjct: 573 GIGISPEGQKKLFQSFSQVDGSPTRQYGGTGLGLVICKQLVEMMGGEIGVRTSVGKGSNF 632 Query: 805 EIIFPLYDTSHP 816 PL P Sbjct: 633 WFTIPLQMQPQP 644 >gi|255033986|ref|YP_003084607.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254946742|gb|ACT91442.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 868 Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 91/269 (33%), Positives = 141/269 (52%), Gaps = 11/269 (4%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+E + L A+ +AEK K FL+ VSHEIRTPL AIIGF+ ++ G + Sbjct: 343 RDITERANYEATLEKARSLAEKSVRVKDIFLSNVSHEIRTPLNAIIGFTNLL----MGEV 398 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + EY YI +G +L+++ND+LD SKIE+G+++L PVS+ E E +++ Sbjct: 399 TDQKSQEYVGYIQYAGKNLLELINDILDFSKIEAGQVHLEKAPVSIRELADEISAIMHHR 458 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII----ISTTHTS 733 A EK I+ A+ +P + D + QI LN+ NA+ FT G + I Sbjct: 459 AVEKGIVYEALLADGLPEFIETDKLRLTQILLNVCGNAVKFTEKGSVKLRVAPIGEPLND 518 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + + V+DTGVG+ +L++ F Q S GTGLGL + K++V G Sbjct: 519 VQNIRFEVKDTGVGIPKDKLKEVFNRFVQATESTTRVFGGTGLGLSIVKSLVQLFEGTLN 578 Query: 794 IFSTPAKGTLIEIIFP--LYDTSHPHDCI 820 + S +GT+ + FP + + + HD I Sbjct: 579 LESELGQGTVFTMDFPFRIVNDAGLHDDI 607 >gi|251794485|ref|YP_003009216.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] gi|247542111|gb|ACS99129.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] Length = 1267 Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 113/378 (29%), Positives = 189/378 (50%), Gaps = 39/378 (10%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L I+ + D IA I+ G + N+A ++ G P+ D K + ++E PS M YL Sbjct: 483 LLDIIGSAKDLIASIDHNGKVAYINKAGKRMLGLPL-DYKPKDYKSYVE---PS-MYLYL 537 Query: 514 TEILSLDLRQTL-----EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEW 564 + + ++ E +T K +++ ++I P+ + +S DI+E Sbjct: 538 IKGSRIAMKMGYWEGEAELLTQAGDK----VNVSLVIVAHPYRNTGELYFSCIARDITEQ 593 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K + +L A + AE+ ++ KS FLA VSHEIRTPL IIG S++++ P Sbjct: 594 KHIQEELIQATQEAEQANAAKSRFLAMVSHEIRTPLNGIIGLSQLMRRTGLSP------- 646 Query: 625 EYANYIDRSGN---LVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLY 678 +Y+D+ GN +L I+NDLLD SKIE+GK+ + F+P + +++ +S+ Sbjct: 647 SQKDYMDKLGNSSESLLRIINDLLDFSKIEAGKVEVERVAFQPQEMLSRLTDQLSV--FM 704 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE 736 +++ +P +L D V+QI LN+ NA+ FT G ++ + ++ Sbjct: 705 GGKEQFEFILEVPEQLPTTLLGDQMRVEQILLNLCMNAVKFTERGHVKLALEVMEQCSDG 764 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + L+ V DTG+GMT +++K PF Q S + GTGLGL +A +V GK + Sbjct: 765 LKLQFTVEDTGIGMTKKQIDKLFTPFTQADGSTTRKYGGTGLGLVIANGLVKMMGGKIQV 824 Query: 795 FSTPAKGTLIEII--FPL 810 S P G+ + FP+ Sbjct: 825 DSEPGLGSRFSFVLSFPV 842 >gi|39656315|gb|AAR29880.1| putative histidine kinase HHK1p [Cochliobolus heterostrophus] Length = 2370 Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 90/235 (38%), Positives = 130/235 (55%), Gaps = 11/235 (4%) Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 K+ E+ + KS FLA VSHE+RTPL +IG SE++K PL N YA+ I + Sbjct: 1879 KLKEEAAKAKSLFLANVSHELRTPLNGVIGMSELLKA---SPL-NGEQSGYADSIRVCAD 1934 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L I+NDLLD SK+E+GKMN+ P+SL+E ++E + + Y N +R L P Sbjct: 1935 TLLSIINDLLDYSKLEAGKMNVMEMPISLNETIAEVVRALA-YTNAERGLKTIEQLELDP 1993 Query: 696 RIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTN 750 +L D + QI +N+LSN+ FTP G + + E V V DTG+G+ + Sbjct: 1994 EMLVMGDPVRLHQILMNLLSNSYKFTPRGSVTVRAVVDQETSEWADVTCSVIDTGIGIPD 2053 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM-GKFYIFSTPAKGTLI 804 + +K PF QI +S GTGLGL + KA+++ M G + S P KGT + Sbjct: 2054 EQKQKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHGTVRLDSQPGKGTTV 2108 >gi|21241667|ref|NP_641249.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri str. 306] gi|21107031|gb|AAM35785.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri str. 306] Length = 636 Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 144/238 (60%), Gaps = 7/238 (2%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE + K++FL+R SHE+RTPL AI+G+++V++ L P + + +I +G + Sbjct: 269 AETANRAKTEFLSRSSHELRTPLNAILGYAQVLEMD----LPEPGHRRHLRHILGAGRHL 324 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ +LLDI++IE+ +++L EP+S+ AV EA+ L+ A++ I ++ + + + Sbjct: 325 LGLITELLDIARIEADQLDLSPEPISVRAAVHEALGLIAPDADKHGIALQPASIDGPWTV 384 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 AD + ++Q+ LN+LSNA+ F +GGQ+ +S E+V + V D G G+T ++E+ Sbjct: 385 RADAQRLRQVLLNLLSNAVKFNRTGGQVQVS-AQADGEQVRITVADQGAGLTPAQIERLF 443 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 PF ++ +++ EGTGLGL L+K +++A G+ + S+ + G I P + H Sbjct: 444 TPFERL-GAERSAVEGTGLGLALSKRLIEAMGGQIGVDSS-SDGARFWISLPQGEHQH 499 >gi|294498535|ref|YP_003562235.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium QM B1551] gi|294348472|gb|ADE68801.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium QM B1551] Length = 995 Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 92/258 (35%), Positives = 145/258 (56%), Gaps = 10/258 (3%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y DI+E K+ + + AK+ AEK + KS FL+++SHE+RTPL I+GF+++++ Sbjct: 238 YLWEFEDITEQKKMERVIIQAKEEAEKVNMAKSSFLSKMSHELRTPLNGILGFAQLLE-- 295 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 N + ++A I G+ +L ++ND+LD+S+IE+G + + E V L + E I+ Sbjct: 296 -MDESLNEQQRDFAQEILSGGSHLLSLINDILDVSRIETGNLKISVEEVHLLTVIKECIN 354 Query: 674 LVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +VQ A +K I I + I LAD +KQI LN+L NAI + G++I+ Sbjct: 355 IVQPLAKKKNISIYSQLDQWEDMIVLADPIRLKQILLNLLDNAIKYNQENGKVIVFCRLQ 414 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 N++ I + DTGVG + E K PF +I ++++ EGTG+GL L K +V G+ Sbjct: 415 ENKQYI-HIVDTGVGFSVEEYTKVFVPFYRIESTKE---EGTGIGLSLVKQLVHLMGGEI 470 Query: 793 YIFSTPAKGTLIEIIFPL 810 + T KGT E F L Sbjct: 471 NV--TSNKGTGSEFCFSL 486 >gi|262402984|ref|ZP_06079544.1| hypothetical protein VOA_000965 [Vibrio sp. RC586] gi|262350483|gb|EEY99616.1| hypothetical protein VOA_000965 [Vibrio sp. RC586] Length = 1586 Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 114/416 (27%), Positives = 201/416 (48%), Gaps = 20/416 (4%) Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 ++ M F+ + Q+ + + E+ + ++ +K E EV++ ++LE++ + I++ Sbjct: 669 AIMMVFVLMSVSIQYWLWLTSMVKQREEWNLQLQNQK-EKEVLRFKALLESSPEATLIVD 727 Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPF-TVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 GII N K+FGY +++ P +FL + H +LR ++I Sbjct: 728 TSGIIKMVNEEAEKVFGYGRDELEGYPMHRLFLHDLESARAKHARW----YELRPGNQRI 783 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 + +E + I + S+++ +I++ + L A AE+ + KS Sbjct: 784 EIAVRSDETEFPVEISSSSVQMDDGLLISVSIRNITDRLAFEQTLKKALHDAEQATQAKS 843 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 FLA SHEIRTPL AI+G + ++ ++ R + + I SG +L IVND+LD Sbjct: 844 VFLANTSHEIRTPLNAILGLTHLLSDESLTE-SQHRLV---DKIGISGKSLLGIVNDVLD 899 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705 +SKIE+ +M L P+ L E + E S+ A K + + ++P ++AD ++ Sbjct: 900 LSKIEANEMILEALPLDLKEFLEEVASVFSTQAEAKNLDFKLEMGADLPHWVIADSMRLR 959 Query: 706 QIALNILSNAIHFTPSGG-----QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMK 758 QI N+LSNA+ FT G ++I + E+ I+R + DTG+G++ ++ K Sbjct: 960 QILTNLLSNALKFTSVGHIALRVEVIDKFSWNGAEKNIVRFSITDTGIGISEEAQKRLFK 1019 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 PF Q S R GTGLGL + ++ GK + S+ +G+ PL S Sbjct: 1020 PFSQADTSTSRRFGGTGLGLSIVHKLLGLMEGKIGVESSEGQGSTFWAEMPLQTLS 1075 >gi|218282519|ref|ZP_03488769.1| hypothetical protein EUBIFOR_01351 [Eubacterium biforme DSM 3989] gi|218216506|gb|EEC90044.1| hypothetical protein EUBIFOR_01351 [Eubacterium biforme DSM 3989] Length = 950 Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 83/234 (35%), Positives = 137/234 (58%), Gaps = 7/234 (2%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A K AE S K+ FL VSH+IRTP+ AI+G+SE++KN+ P+ E+ N + ++ Sbjct: 558 ALKSAEDASLAKTQFLHNVSHDIRTPMNAILGYSELMKNE-LKDNDLPKVFEHLNKLQKA 616 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 GN++L I+N++LD+++IESG M L ++++ I + + A +K I +R +F Sbjct: 617 GNILLSIINNVLDMARIESGHMELDENYANIEDIRQRLIEMFEDEAKKKNIHVRYTFNVE 676 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILR--VRDTGVGM 748 ++AD+ V++I +NILSNA+ +TPS G + ++ S +E +I+R + DTG+GM Sbjct: 677 HKHVMADVTKVEEIFVNILSNALKYTPSNGSVEVNVDELSCDEPGYMIVRTSIMDTGIGM 736 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + LEK + F + + GTGLG+ + K VD G + S KG+ Sbjct: 737 SQEYLEKIFESFSR-ERMISSKISGTGLGMAIVKKYVDLLGGTIDVKSVLGKGS 789 >gi|193084071|gb|ACF09741.1| two-component system sensory histidine kinase [uncultured marine group III euryarchaeote AD1000-40-D7] Length = 441 Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 89/235 (37%), Positives = 134/235 (57%), Gaps = 7/235 (2%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A+ S KSDFLA +SHE+RTPL AIIG+SE++ + G Y + + I+ SG + Sbjct: 206 AQNASKAKSDFLANMSHELRTPLNAIIGYSEMLMEEAEDD-GLDTYSDDLSKINSSGEHL 264 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVS--EAISLVQLYANEKRILIRTSFANNIP 695 L ++ND+LD+SKIE+GKM LH E L++ +S EA + + N + +I +NI Sbjct: 265 LTLINDILDLSKIEAGKMELHIEVFELEKHLSQIEATAKPLVEKNGNKFVIEK--PDNIK 322 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 ++ D ++QI N+LSNA FT G + ++ T S +++ V DTG+GM +L K Sbjct: 323 KLTNDQTKLRQILFNMLSNAAKFTKKG-TVTLAITK-SGDDIKFAVVDTGIGMNEGQLGK 380 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F Q +S GTGLGLP++K M + G+ + S KGT I P+ Sbjct: 381 VFEEFTQAESSTSKDYGGTGLGLPISKMMTEMMGGRMDVESEEGKGTTFSITIPI 435 >gi|303248204|ref|ZP_07334468.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490468|gb|EFL50377.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 820 Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 137/247 (55%), Gaps = 18/247 (7%) Query: 579 EKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA---------- 627 EKE K++F++ VSHE+RTPLT+++GF+++I+ ++F L P E Sbjct: 354 EKEVDRMKTEFISTVSHELRTPLTSVLGFAKIIR-RKFTDLVAPALTEATPKTWRGAQQI 412 Query: 628 ----NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + I G + ++V+D+LDI+K+ESG+ + PVSL E A+ V A K Sbjct: 413 RENLDIIVAEGQRLTELVDDVLDIAKMESGRCEWNMAPVSLAETAGHAVRAVAGLAARKG 472 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 I + N+PRIL D + Q+ +N+L NA+ FT G ++ + S E+ + VRD Sbjct: 473 ISLENKLPANLPRILGDRDRLIQVFVNLLGNAVKFTEHGAIVVEGSVDGS--EIRVAVRD 530 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G G+ +LE+ + F Q ++ + +GTGLGLP+ + +++ + G+ + S P +G++ Sbjct: 531 SGSGIAPADLERIFEKFKQAGDTLTEKPKGTGLGLPICRQIIERHGGRIWAESEPGQGSV 590 Query: 804 IEIIFPL 810 P+ Sbjct: 591 FRFTLPI 597 >gi|289665595|ref|ZP_06487176.1| two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 1364 Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 105/379 (27%), Positives = 180/379 (47%), Gaps = 29/379 (7%) Query: 464 GIAII--NREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLD 520 G AII + G + N A KL GY +++ R+ + F+EQ+ H L + Sbjct: 503 GYAIIATDSSGFVTLFNPAAEKLLGYSAAEVIGRRKASQFIEQDELQARAHMLADQTGTP 562 Query: 521 LRQTLEKI----TLGSTKEEKLLSLRIIIKKLP----FSSC---------YSLTMHDISE 563 + TLE I +LG + + + ++LP S+ Y D++E Sbjct: 563 VAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAVDLTE 622 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K + +L A A+ + KSDFLA +SHEIRTP+ AI+G +++ Sbjct: 623 QKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQ--- 679 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 E IDRS +L+I+ND+LD SKIE+G+++L P L++ L++ + K Sbjct: 680 -EMVTKIDRSARALLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSLSAKP 738 Query: 684 I-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVI 738 + +I + +L D + Q+ +N++ NAI FT G ++ S + +++ Sbjct: 739 VEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKLKLL 798 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 VRDTG+G++ + PF Q S R G+GLGL +++ +V+ G+ + S P Sbjct: 799 FSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGELEVESVP 858 Query: 799 AKGTLIEIIFPLYDTSHPH 817 +G+ + L ++ P Sbjct: 859 GRGSEFYFVITLEKSAPPQ 877 >gi|167749659|ref|ZP_02421786.1| hypothetical protein EUBSIR_00617 [Eubacterium siraeum DSM 15702] gi|167657412|gb|EDS01542.1| hypothetical protein EUBSIR_00617 [Eubacterium siraeum DSM 15702] Length = 967 Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 98/302 (32%), Positives = 158/302 (52%), Gaps = 25/302 (8%) Query: 520 DLRQTLEKITLGSTKEEK------------LLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567 ++R+ L ++++G KE + L + K+ Y L M D ++ ++ Sbjct: 385 NIRENLIRMSVGERKEWERKYVCRNSGNTCLFHITAFRNKIDGEDRYILAMSDRTKERKT 444 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EY 626 L A A+K ++ KS F++ +SH+IRTPL+AIIGF+ + N+ GN EY Sbjct: 445 NLALHSAVNEAKKANNAKSSFISGISHDIRTPLSAIIGFASLAANEE----GNSEATKEY 500 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 N I SGN +L +++D+LDIS IESG++ + V L E +++ A EK+ + Sbjct: 501 INKIITSGNQLLGLISDILDISVIESGRLTFNITNVDLSRMFYEIRTVISSIAAEKQHNL 560 Query: 687 RTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EVILR 740 S N I+ D +Q+ +N LSNAI FT +GG I ++ T T + E +R Sbjct: 561 TISMHNVTHEIVRCDKHRFEQLIMNFLSNAIKFTHNGGNISLTLTETDDGKKGVPEYEIR 620 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 VRD G+GM+ +K +P+ + + I GTGLG+P++K +VDA G + + Sbjct: 621 VRDNGIGMSEEFTKKIFEPYEREMTDKNI--GGTGLGMPISKRIVDAAGGSITVNTKKGA 678 Query: 801 GT 802 GT Sbjct: 679 GT 680 >gi|218460506|ref|ZP_03500597.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli Kim 5] Length = 590 Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 135/255 (52%), Gaps = 8/255 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K + +L AE KS+FLA +SHEIRTP+ ++G +E++ Sbjct: 168 DVTELKSREEELRELLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNL---- 223 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + R + + I +SGN +L I+ND+LD SKI++G+M L + EAV + +L+ +A Sbjct: 224 DTRQKTFIDIIVKSGNALLTIINDILDFSKIDAGQMTLRKAAFDITEAVEDVATLLSSHA 283 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEV 737 EK I + A ++P ++ D +QI N++ NA+ FT G + + E+ Sbjct: 284 AEKNIELLGRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVGFETVVGGEI 343 Query: 738 I--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +R+ DTG+G+ + +LE F Q+ S R EGTGLGL + +VD G + Sbjct: 344 MANIRIEDTGIGIPHEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYIKVE 403 Query: 796 STPAKGTLIEIIFPL 810 S KG++ + P Sbjct: 404 SQWGKGSVFTVKLPF 418 >gi|114776540|ref|ZP_01451585.1| Two component system histidine kinase [Mariprofundus ferrooxydans PV-1] gi|114553370|gb|EAU55768.1| Two component system histidine kinase [Mariprofundus ferrooxydans PV-1] Length = 1017 Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 87/269 (32%), Positives = 139/269 (51%), Gaps = 14/269 (5%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 SL H + + L+ A + + + KS F++ +SHE+RTPLT+I GFSE + + Sbjct: 292 SLNEHLEARIMERTADLTSANEALTRANQAKSQFISNMSHELRTPLTSINGFSEFLIDGF 351 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 GPL N +Y I+ SG +L+++N +LD++KIE+GKM L E V + + E + + Sbjct: 352 VGPL-NETQTKYLKNINISGKHLLELINGILDLAKIEAGKMTLKLEKVDVAALLDEILLV 410 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII------- 727 +Q YA + + + IP I+ D KQI N+ SNAI F+P GG++ I Sbjct: 411 LQGYATKTSVRLLLECDAAIPGIVLDRTKFKQILYNLCSNAIKFSPQGGEVRIVVDYNNS 470 Query: 728 -STTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 + H +E + + + D G+G++ + PF Q S EGTGLGL L Sbjct: 471 AAGQHNDDELESYARLTVAIHDEGIGISPEDQVHIFNPFEQADGSHSRNYEGTGLGLTLT 530 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + +V+ + G + S P KG+ P+ Sbjct: 531 QRLVEMHGGSIEVNSAPDKGSCFVFTLPV 559 >gi|71909298|ref|YP_286885.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal [Dechloromonas aromatica RCB] gi|71848919|gb|AAZ48415.1| signal transduction histidine kinase [Dechloromonas aromatica RCB] Length = 620 Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 87/247 (35%), Positives = 137/247 (55%), Gaps = 10/247 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 IS ++ K KL AK+ AE ++ KS FLA +SHE+RTP+T IIG S ++ + Sbjct: 222 ISSLRESKAKLRQAKEEAESANAAKSQFLANMSHELRTPMTGIIGMSFLMMRTEL----D 277 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + ++A+ I RS N +L I+ND+LD+S IE+ K+ L S + + E ++L+ A+ Sbjct: 278 EQQRDFADTIQRSANALLIIINDILDLSAIEAEKLRLAHANYSARKVIGEVLALISPSAD 337 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K I + + A+++P IL D ++Q+ LN+L NAI FT G + + H ++ Sbjct: 338 AKNISLISQIADDLPEILVGDAIRLRQVLLNLLGNAIKFTEQ-GSVTLEVAHQPTDDGRQ 396 Query: 740 R----VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 R VRDTG+GMT + PF Q S R GTGLGL +++ +++ G+ Sbjct: 397 RLNFVVRDTGIGMTPGVVNALFTPFFQADLSNTRRFGGTGLGLSISRRLIELMHGEISAE 456 Query: 796 STPAKGT 802 S P G+ Sbjct: 457 SEPDVGS 463 >gi|78046490|ref|YP_362665.1| two-component system sensor protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325926044|ref|ZP_08187408.1| signal transduction histidine kinase [Xanthomonas perforans 91-118] gi|78034920|emb|CAJ22565.1| two-component system sensor protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543570|gb|EGD14989.1| signal transduction histidine kinase [Xanthomonas perforans 91-118] Length = 636 Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 144/238 (60%), Gaps = 7/238 (2%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE + K++FL+R SHE+RTPL AI+G+++V++ L P + + +I +G + Sbjct: 269 AETANRAKTEFLSRSSHELRTPLNAILGYAQVLEMD----LPEPGHRRHLQHILGAGRHL 324 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ +LLDI++IE+ +++L EPVS+ AV EA+ L+ A++ I ++ + + + Sbjct: 325 LGLITELLDIARIEADQLDLSPEPVSVRAAVHEALGLIAPDADKHGIALQPASIDGPWTV 384 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 AD + ++Q+ LN+LSNA+ F +GGQ+ +S E+V + V D G G+T ++++ Sbjct: 385 RADAQRLRQVLLNLLSNAVKFNRTGGQVQVS-AQADGEQVRITVADQGAGLTPAQIDRLF 443 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 PF ++ +++ EGTGLGL L+K +++A G+ + S+ + G I P + H Sbjct: 444 TPFERL-GAERSAVEGTGLGLALSKRLIEAMGGQIGVHSS-SDGARFWISLPQGEHRH 499 >gi|38505595|ref|NP_942216.1| two-component hybrid sensor and regulator [Synechocystis sp. PCC 6803] gi|38423619|dbj|BAD01830.1| two-component hybrid sensor and regulator [Synechocystis sp. PCC 6803] Length = 1209 Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 83/237 (35%), Positives = 132/237 (55%), Gaps = 11/237 (4%) Query: 567 EKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 E+NK L A K AE + KSDFLA +SHEIRTP+ A+IG + ++ + N + + Sbjct: 489 EQNKALMTATKAAEDANRAKSDFLATMSHEIRTPMNAVIGMTGLLLDTHL----NTQQQQ 544 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + I SG +L ++ND+LD SKIESG+ L P + + V E + LV A K++ Sbjct: 545 FTETIRSSGEALLSLINDILDFSKIESGQFKLEIHPFEIQQCVEECLDLVAPQAFAKKLD 604 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE----VIL 739 + +P IL DL V+Q+ +NIL+NA+ FT SG Q+ +S T + ++ + Sbjct: 605 LVYQIEPQVPMAILGDLTRVRQVLVNILANAVKFTTSGSIQVRVSATVANQQQNKYTIQF 664 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 ++DTG+G++ + K F Q+ S + GTGLGL + K + + G+ ++ S Sbjct: 665 SIKDTGIGISPDQQSALFKSFSQVNTSIARKYGGTGLGLAICKRLTEMMGGQIWVES 721 >gi|260777312|ref|ZP_05886206.1| hypothetical protein VIC_002706 [Vibrio coralliilyticus ATCC BAA-450] gi|260606978|gb|EEX33252.1| hypothetical protein VIC_002706 [Vibrio coralliilyticus ATCC BAA-450] Length = 882 Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 89/252 (35%), Positives = 136/252 (53%), Gaps = 7/252 (2%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I K + L AK+ AE + KS FLA +SHEIRTPL I+G +E++ + R N Sbjct: 364 IQAQKDHERDLVVAKENAEAANQAKSVFLANMSHEIRTPLNGIMGMTEILSDSRL----N 419 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + + ID S + +L ++ND+LD+SKIESG + L + EAV EA+++V A Sbjct: 420 SSQKDILSDIDVSSHALLVLINDILDLSKIESGNLTLSPSHADVREAVFEAMNMVSTKAL 479 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 ++++ +R + + +IP + D KQI +N+LSNA+ FT G ++ E+ L Sbjct: 480 KQQVELRATLSPDIPDSLYIDEFRFKQILMNLLSNAVKFTQDGSVSVVVKLMNEGEKAYL 539 Query: 740 R--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V DTGVG+ +LE+ +PF Q S R GTGLGL + + + + G ST Sbjct: 540 HCSVVDTGVGINEEKLEEIFEPFTQEDGSITRRYGGTGLGLAICRQIAELMGGSITASST 599 Query: 798 PAKGTLIEIIFP 809 P G+ + P Sbjct: 600 PGLGSRFSFVIP 611 >gi|190892952|ref|YP_001979494.1| two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] gi|190698231|gb|ACE92316.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] Length = 1126 Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 81/255 (31%), Positives = 135/255 (52%), Gaps = 8/255 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K + +L AE KS+FLA +SHEIRTP+ ++G +E++ Sbjct: 567 DVTELKSREEELRELLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNL---- 622 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + R + + I +SGN +L I+ND+LD SKI++G+M L + EAV + +L+ +A Sbjct: 623 DTRQKTFIDIIVKSGNALLTIINDILDFSKIDAGQMKLRKAAFDITEAVEDVATLLSSHA 682 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEV 737 EK I + A ++P ++ D +QI N++ NA+ FT G + + + E+ Sbjct: 683 AEKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVGFETVAGGEI 742 Query: 738 I--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +R+ DTG+G+ +LE F Q+ S R EGTGLGL + +VD G + Sbjct: 743 MANIRIEDTGIGIPEEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYIKVE 802 Query: 796 STPAKGTLIEIIFPL 810 S +G++ + P Sbjct: 803 SQWGEGSVFTVNLPF 817 >gi|153828763|ref|ZP_01981430.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 623-39] gi|148875716|gb|EDL73851.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 623-39] Length = 1331 Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 143/251 (56%), Gaps = 10/251 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K+ +++L AK+ A+ S K DFLA +SHEIRTP+ AI+G + + N PL Sbjct: 582 DMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---PLD 638 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + +Y I+ S +L I+ND+LD SK+E+GK+N+ +LD+ + ++V L A Sbjct: 639 TTQR-KYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKA 697 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS--TTHTSNEE 736 EK I +IP ++ D + Q+ +N+ NA+ FT S G+I++S + + ++ Sbjct: 698 QEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQ 756 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V LR V+DTG+G+ +L+ F Q NS + GTGLGL ++K +V+ G + Sbjct: 757 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGHITV 816 Query: 795 FSTPAKGTLIE 805 S KG+ E Sbjct: 817 HSEEGKGSTFE 827 >gi|260461500|ref|ZP_05809747.1| histidine kinase [Mesorhizobium opportunistum WSM2075] gi|259032570|gb|EEW33834.1| histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 779 Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 129/247 (52%), Gaps = 8/247 (3%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE KS+FLA +SHEIRTP+ ++G +E++ R + + I +SGN + Sbjct: 227 AEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTEL----TARQKTFTDVIVKSGNAL 282 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696 L I+ND+LD SKI +G++ L P L EAV + +LV EK + + +P Sbjct: 283 LTIINDILDFSKINAGQLTLDPAPFRLAEAVEDVATLVSARVAEKNLELIVRVDPRLPTY 342 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--EVILRVRDTGVGMTNYELE 754 ++ D +QI N++ NA+ FT G +I T N ++ LRV DTG+G+ +L+ Sbjct: 343 VVGDAGRFRQIVTNLVGNAVKFTEKGHVLIDVGGETVNGVVQLKLRVEDTGIGIPAEKLQ 402 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL-YDT 813 + F Q+ S R EGTGLGL +A +VD GK + S +G++ PL T Sbjct: 403 NVFEKFAQVDGSSTRRHEGTGLGLAIAARLVDLMAGKIGVESEIGRGSVFWFAVPLPLHT 462 Query: 814 SHPHDCI 820 + D I Sbjct: 463 AQARDEI 469 >gi|294665212|ref|ZP_06730511.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605035|gb|EFF48387.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 636 Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 144/238 (60%), Gaps = 7/238 (2%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE + K++FL+R SHE+RTPL AI+G+++V++ L P + + +I +G + Sbjct: 269 AETANRAKTEFLSRSSHELRTPLNAILGYAQVLEMD----LPEPDHRRHLQHILGAGRHL 324 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ +LLDI++IE+ +++L EP+S+ AV EA+ L+ A++ I ++ + + + Sbjct: 325 LGLITELLDIARIEADQLDLSPEPISVRAAVHEALGLIAPDADKHGIALQPTSIDGPWTV 384 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 AD + ++Q+ LN+LSNA+ F +GGQ+ +S E+V + V D G G+T ++E+ Sbjct: 385 RADAQRLRQVLLNLLSNAVKFNRTGGQVQVS-AQADGEQVRITVADQGAGLTPAQIERLF 443 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 PF ++ +++ EGTGLGL L+K +++A G+ + S+ + G I P + H Sbjct: 444 TPFERL-GAERSAVEGTGLGLALSKRLIEAMGGQIGVDSS-SNGARFWISLPQGEHQH 499 >gi|114562225|ref|YP_749738.1| hybrid sensory histidine kinase BarA [Shewanella frigidimarina NCIMB 400] gi|114333518|gb|ABI70900.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] Length = 952 Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 91/246 (36%), Positives = 138/246 (56%), Gaps = 10/246 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A + S KS+FLA +SHE+RTPL +IGF+ +++K PL + ++Y Sbjct: 306 ELDIAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLLKT----PLHTSQ-LDYIK 360 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS + +L I+ND+LD SK+E+GKM L P +L E ++E ++++ A EK + + Sbjct: 361 TIERSASNLLGIINDILDFSKLEAGKMILEKMPFALRETLTETLTIIAGSAQEKGLELVI 420 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDT 744 N+P + D V QI N++ NAI FT G I+ I + + LR V DT Sbjct: 421 DIDANVPESVSGDAMRVSQIITNLVGNAIKFTDKGSVILKIHLVGQDEDNITLRCEVIDT 480 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + E + FGQ +S R GTGLGL + K +++ G+ S P KG+ Sbjct: 481 GIGIDESQQEYLFQAFGQADSSISRRFGGTGLGLVITKRLINQMGGQIGFTSAPNKGSNF 540 Query: 805 EIIFPL 810 I PL Sbjct: 541 WFILPL 546 >gi|294626148|ref|ZP_06704755.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599597|gb|EFF43727.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 636 Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 144/238 (60%), Gaps = 7/238 (2%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE + K++FL+R SHE+RTPL AI+G+++V++ L P + + +I +G + Sbjct: 269 AETANRAKTEFLSRSSHELRTPLNAILGYAQVLEMD----LPEPDHRRHLQHILGAGRHL 324 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ +LLDI++IE+ +++L EP+S+ AV EA+ L+ A++ I ++ + + + Sbjct: 325 LGLITELLDIARIEADQLDLSPEPISVRAAVHEALGLIAPDADKHGIALQPTSIDGPWTV 384 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 AD + ++Q+ LN+LSNA+ F +GGQ+ +S E+V + V D G G+T ++E+ Sbjct: 385 RADAQRLRQVLLNLLSNAVKFNRTGGQVQVS-AQADGEQVRITVADQGAGLTPAQIERLF 443 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 PF ++ +++ EGTGLGL L+K +++A G+ + S+ + G I P + H Sbjct: 444 TPFERL-GAERSAVEGTGLGLALSKRLIEAMGGQIGVDSS-SNGARFWISLPQGEHQH 499 >gi|328544566|ref|YP_004304675.1| Sensor histidine kinase with a PAS domain [polymorphum gilvum SL003B-26A1] gi|326414308|gb|ADZ71371.1| Sensor histidine kinase with a PAS domain [Polymorphum gilvum SL003B-26A1] Length = 588 Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 83/259 (32%), Positives = 139/259 (53%), Gaps = 3/259 (1%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DIS + + L+ + AE S+ ++ FLA + E+RTPL AI+GF+++++ Sbjct: 319 VLRDISARRLHDDALAAERSAAEATSAARTRFLASIGQELRTPLNAILGFADLLRAGSSP 378 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + R +Y + I +SG +L +V DLLD+SKIE+G+ +L EP L + + ++ Sbjct: 379 SD-DSRSRKYIDLIHQSGTHLLQMVEDLLDMSKIEAGRYDLSIEPFDLPQCLETCRHMLA 437 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A+ K I I T N + AD R+ QI L++LSNA+ F SG ++++ + Sbjct: 438 TEASGKGIEIVTEVDNGLGAFPADRRACMQIVLSLLSNAVKFGASGSRMVL-CARRDRDR 496 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V L VRD+G G+ +L + + + + + GTGLGL + KA+ + G + S Sbjct: 497 VELSVRDSGPGIAATDLPRLGQSYFRTRDPALCEAPGTGLGLSVVKALAELYGGAMTVDS 556 Query: 797 TPAKGTLIEIIFPLYDTSH 815 P GT + + PL T+H Sbjct: 557 LPGTGTCVTVTLPLR-TAH 574 >gi|323698578|ref|ZP_08110490.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323458510|gb|EGB14375.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 1118 Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 86/257 (33%), Positives = 138/257 (53%), Gaps = 14/257 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+ ++ +L A++ AE+ + KSDFLAR+SHEIRTP+ AIIG + + + Sbjct: 346 IAARERNGRELETARRAAEEANRAKSDFLARMSHEIRTPMNAIIGLTHLALKTQL----T 401 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + +Y + S N +L I+ND+LD SKIE+G++ + LD+ ++ I+++ L A Sbjct: 402 AKQADYLAKVSLSANSLLGIINDILDFSKIEAGRLTVDEADFLLDDVLNNIINMLGLSAE 461 Query: 681 EKRI----LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNE 735 +K I L+R++ N R+ D + Q+ LN+ +NAI FT G I+ Sbjct: 462 QKGIEFLLLVRSTVPN---RVRGDALRLGQVLLNLTNNAIKFTEKGEVILQADLLEQDGT 518 Query: 736 EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++R VRDTG+G+ L++ +PF Q S + GTGLGL ++K +V G Sbjct: 519 TAVIRFSVRDTGIGIGPEHLDQLFQPFSQADGSITRQFGGTGLGLSISKRLVKMMGGDMA 578 Query: 794 IFSTPAKGTLIEIIFPL 810 + S P KG+ PL Sbjct: 579 VVSEPGKGSEFSFTLPL 595 >gi|320353526|ref|YP_004194865.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320122028|gb|ADW17574.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 930 Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 95/265 (35%), Positives = 142/265 (53%), Gaps = 11/265 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E KQ + +L A++ AE S KSDFLA +SHEIRTPL AI+GFS + + G Sbjct: 417 DITEQKQHQAELQAAREAAEAASRAKSDFLALISHEIRTPLNAIVGFSALARRTADG--- 473 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + EY + +D+S L++D+VND+LD+SK+E+G++ L P +L EAV A Sbjct: 474 -VQLREYVDILDQSSRLLMDLVNDVLDMSKVEAGQLQLESIPFNLPEAVDLLQWQFAPVA 532 Query: 680 NEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 K++ + + P I D +QIA N+LSNA+ FT SG ++ T Sbjct: 533 ARKQLDFQVIREETLPPWIQGDPIRFRQIASNLLSNAMKFTESGCVLLRVTAQDQAPGVE 592 Query: 737 ----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 V L VRDTG+G+ ++ +PF Q+ + GTGLGL + +V+ G+ Sbjct: 593 GRCLVRLEVRDTGIGIEARQIASLFQPFQQLDPGISRKYGGTGLGLAIVHRLVELMQGRV 652 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHPH 817 + STP G+ + P +S P Sbjct: 653 EVASTPGTGSSFTVELPFVLSSPPQ 677 >gi|91772785|ref|YP_565477.1| signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711800|gb|ABE51727.1| pleC-like signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 383 Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 82/236 (34%), Positives = 135/236 (57%), Gaps = 5/236 (2%) Query: 576 KIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 KI ++ H KSDFLA +S+E+RTPL +IIGFS+V++ + GPL N + ++Y + SG Sbjct: 147 KIDLDDACHVKSDFLASMSYELRTPLNSIIGFSDVLRTEEIGPL-NEKQLKYLKNVSTSG 205 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L+++N LL++ KIESGK+ L E V + E + E L++ EK I + + +++ Sbjct: 206 KELLELINGLLELLKIESGKVQLQVEDVDVSEVIQEVKVLLEPRTVEKNISLVCNVRSDV 265 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVILRVRDTGVGMTNYEL 753 I AD K + ++++NAI+F I +T H S+ + + + TGVG+ EL Sbjct: 266 GSIKADRAKFKDVLYDLINNAINFVSDDETIRCYATVHESD--LYVTIHYTGVGIPEEEL 323 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + +PF + N + +GTGL LP+ K +V+ + G +I S P G+ P Sbjct: 324 KNVFQPFINVRNFHVQKYQGTGLRLPIVKKIVELHGGAIWIESKPENGSTFTFTIP 379 >gi|189192132|ref|XP_001932405.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187974011|gb|EDU41510.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 389 Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 89/235 (37%), Positives = 133/235 (56%), Gaps = 11/235 (4%) Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 K+ E+ + KS FLA VSHE+RTPL +IG SE++K PL N YA+ I + Sbjct: 28 KLKEEAARAKSLFLANVSHELRTPLNGVIGMSELLKAS---PL-NGEQTGYADSIRVCAD 83 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL--IRTSFANN 693 +L I+NDLLD SK+E+GKMN+ P+SL+E ++E + + Y N +R L I N Sbjct: 84 TLLSIINDLLDYSKLEAGKMNVMEMPISLNETIAEVVRALA-YTNAERGLKTIEQLELNP 142 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTN 750 ++AD + QI +N+LSN+ FTP G + + + +V V DTG+G+ + Sbjct: 143 EMLVMADPVRLHQILMNLLSNSYKFTPRGSVTVRAVVDREGDDWVDVTCSVIDTGIGIPD 202 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM-GKFYIFSTPAKGTLI 804 + +K PF QI +S GTGLGL + KA+++ M G + S P +GT + Sbjct: 203 EQKQKLFLPFSQIESSSTRSYGGTGLGLSICKALIENVMHGTVRLESQPGQGTTV 257 >gi|117926800|ref|YP_867417.1| Hpt sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610556|gb|ABK46011.1| Hpt sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 920 Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 87/261 (33%), Positives = 139/261 (53%), Gaps = 16/261 (6%) Query: 553 CYSLTMHDISE-------WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 C L +HDI+ + + +L AK A++ + KSDFLA +SHEIRTP+ AIIG Sbjct: 122 CVIL-IHDITNTVSREQMLRNQARELHSAKDEAQQANRAKSDFLANMSHEIRTPMNAIIG 180 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 S + N + +Y I S L+L I+ND+LD SKIE+GK+++ LD Sbjct: 181 MSHLALKTDL----NAKQRDYVGKIHDSALLLLGIINDILDFSKIEAGKLSMESVAFYLD 236 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ 724 + +S +LV + EK + I +P ++ D + QI +N+++NA+ FT G Sbjct: 237 DVLSNVANLVSMKVEEKGLEISFQVDRGVPLHLVGDPLRLGQILINLVNNAVKFTEQGNI 296 Query: 725 IIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 ++ T E V +VRD+G+GMT ++++ + F Q +S R G+GLGL + Sbjct: 297 VVAITAELDCESHVVVQFQVRDSGIGMTKQQIDRLFQAFSQADSSTTRRYGGSGLGLSIC 356 Query: 782 KAMVDANMGKFYIFSTPAKGT 802 K +V G ++ S P +G+ Sbjct: 357 KRLVGMMDGDIWVESQPGRGS 377 >gi|144901059|emb|CAM77923.1| Sensor histidine kinase/response regulator [Magnetospirillum gryphiswaldense MSR-1] Length = 896 Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 89/266 (33%), Positives = 146/266 (54%), Gaps = 13/266 (4%) Query: 559 HDISEWKQEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 H + +++ K L AK AE + K+DFLA +SHE+RTP+ IIG +E+++ +R Sbjct: 377 HGLERMVEDRTKELRAAKDTAEAATRAKTDFLAVMSHELRTPMNGIIGMAELLR-RRLEN 435 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISL 674 G + +A I +SG + ++ND+LDIS+IE G + F P+ L E + ++L Sbjct: 436 DGEAQ--RWAGTIKQSGETLTVLLNDILDISRIEGGHLTFERRAFAPLRLAE---DLVAL 490 Query: 675 VQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++L A EK + +R A ++P + LAD ++Q+ LN+L NAI FT G I++S ++ Sbjct: 491 MRLPAAEKGLSLRLDAAPDLPDLALADPARLRQVLLNLLGNAIKFTDHG-DIVLSLAMST 549 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + V DTG+G+ + ++ +PF Q +S R G GLGL + K ++D G Sbjct: 550 PHSLRFSVADTGIGVAAADRDRLFEPFFQADSSASRRHGGAGLGLAICKRLLDGMGGAIS 609 Query: 794 IFSTPAKGTLIEIIFPL-YDTSHPHD 818 + P G+L+ + P T P D Sbjct: 610 YEARPGGGSLLVVDLPFTAATDTPED 635 >gi|27375868|ref|NP_767397.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27349006|dbj|BAC46022.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 862 Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 82/260 (31%), Positives = 135/260 (51%), Gaps = 4/260 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT DI++ + + L + E K DF+ VS+E+R+PLT IIGF+ + + Sbjct: 602 LTFQDITDTENVERALRERNEALEAADQMKVDFVHHVSYELRSPLTTIIGFAHFLSDPST 661 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GPL P+ EY +Y+ +S N +L + N++LD++ I++G M L PV + + + A + Sbjct: 662 GPL-TPKQAEYLDYVTKSTNALLALTNNILDLATIDAGAMKLELGPVDVSKTIELAAEGI 720 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 Q RI ++ A +I + D + V Q+ N+L+NA+ F+P + IS T + Sbjct: 721 QDRLATDRIRLKVEIAPDIGSFIGDEKRVVQVLYNLLANAVGFSPQDSTVGISARRTEH- 779 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V+ V D+G G+ +K F SQ R G GLGL L ++ V+ + GK + Sbjct: 780 SVVFTVTDSGPGIPADMKDKVFNWFES--RSQGSRHRGAGLGLSLVRSFVELHGGKVRVD 837 Query: 796 STPAKGTLIEIIFPLYDTSH 815 S +GT++ FP +H Sbjct: 838 SIVGRGTVVICDFPTDQAAH 857 >gi|218440934|ref|YP_002379263.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218173662|gb|ACK72395.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 1013 Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 132/237 (55%), Gaps = 17/237 (7%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHEIRTP+ AI+GF +++K++ + P+ Y + I SG +L+++ND+ Sbjct: 531 KSEFLANMSHEIRTPMNAILGFCDLLKDR----ITEPQTRGYVDLISASGKTLLELINDI 586 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703 LD+SKIE+GK+ L+FEP+ L E + E + A +K + + N+P IL D Sbjct: 587 LDLSKIEAGKLELNFEPLYLRELIQEIQQIFFQKALKKNLSLLVEIQENVPNTILFDEIR 646 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----------VILRVRDTGVGMTNYE 752 ++QI N++ NA+ FT G + IS +N++ +IL V D+G+G+ + Sbjct: 647 LRQILFNVVGNALKFTEQ-GYVKISVDAQTNDDNCESNQTNTINLILSVEDSGIGIAQDQ 705 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q + GTGLGL + + + + GK + S KGT+ + IFP Sbjct: 706 QIRIFDAFKQTEGQSTRKYGGTGLGLAITRRLTEMLEGKIDLQSEVGKGTIFKFIFP 762 >gi|87307297|ref|ZP_01089442.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] gi|87290037|gb|EAQ81926.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] Length = 1138 Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 109/394 (27%), Positives = 195/394 (49%), Gaps = 19/394 (4%) Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 +A E+M Q E + T+ + E +L I+ TS+G+ I + +G I N Sbjct: 578 RAMALAEDMTQELRASEKIATQSAE-----EAERLAKIIRRTSNGVIITDIDGKIEWIND 632 Query: 480 AVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 +++ GY +E+ L K P + N+ L + L E + E + Sbjct: 633 GFTRISGYQLEEALGKSPRDLLYGPNSNLDAIARLEDAFRLQAPTNSEIVNYAKDGREYV 692 Query: 539 LSLRI--IIKKLPFSSCYSLTMHDISE-------WKQEKNKLSHAKKIAEKESSHKSDFL 589 ++ I ++ + + + +DI+E K +L A + AE+ S KS+FL Sbjct: 693 VATEIAPLLDTSGTLTGFMMIENDITEKCAAEARLKAVNAELMLAHQDAERASKIKSEFL 752 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 A +SHEIRTP+TAI+GFS+++ Q + + I R+GN +L+++ND+LD+SK Sbjct: 753 ANMSHEIRTPMTAIVGFSDLLLEQ---GMSEEEKRKSVGTIQRNGNHLLELINDILDLSK 809 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIA 708 +ESGK ++ + E + + L+ A + ++ +P+ + +D +KQ Sbjct: 810 VESGKFDIELRDMDPTEVIRDVHELLNERAITQENRLQIELKGALPQTIHSDSTRLKQAL 869 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 N++ NAI FT +G +I+ ++E++I +V D+G+GM+ +LE+ +PF Q S Sbjct: 870 FNLVGNAIKFTQNGVVKVIAECDFAHEQMIFQVIDSGIGMSPEQLEQIFQPFRQADASTT 929 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + GTGLGL + K + + G + S G+ Sbjct: 930 RKFGGTGLGLTITKQIAELLGGDVRVESQSGVGS 963 >gi|51244735|ref|YP_064619.1| two-component system sensory/regulatory protein [Desulfotalea psychrophila LSv54] gi|50875772|emb|CAG35612.1| related to two-component system sensory/regulatory protein (hybrid family) [Desulfotalea psychrophila LSv54] Length = 1041 Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 105/372 (28%), Positives = 183/372 (49%), Gaps = 11/372 (2%) Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 +IL+ S+ I I+ + +LS N + F Y E+I+ + + L + + T Sbjct: 313 VAILDTASNPIITIDEDETVLSFNLGAERSFAYSAEEIIGQKVKILLPDLYEKYEDEFAT 372 Query: 515 EILSLDLRQT--LEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNK 570 + D +++ K + + + + ++ S + + + D+S KQ + Sbjct: 373 SFFAKDDAHLIDMDREIDARRKNGTIFPIHLSVGEMIVSGKRMFVIILVDLSVQKQRNLE 432 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A+ AE K+ FLA +SHEIRTP+ AI+GF ++ P ++I A+ Sbjct: 433 LELARDAAEAAMEAKAIFLANMSHEIRTPMNAILGFLAIVLESSSLPADLRKHIVTAH-- 490 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 S +L I+ND+LD+SK +SG+M L F L + +A+ + + A EK + I ++ Sbjct: 491 -GSAESLLVIINDVLDVSKFDSGRMELVFSVFHLPRTIGKALQTLYMPAQEKELNIHLNY 549 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--VILRVRDTGVG 747 ++P L D ++Q+ +N+++NAI FT G I I TS E+ ++ V DTG+G Sbjct: 550 DEDLPYCFLGDSVRLRQVIINLVANAIKFTEEG-SITIEVKGTSGEDDLLLFTVVDTGIG 608 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + ++ + +PF Q +S GTGLGL + K +VD G+ ++ S KG+ + Sbjct: 609 IRPEQVARIFEPFTQADDSSTRNIGGTGLGLAICKEIVDLMGGRIWVESEKGKGSSFNFM 668 Query: 808 FPLYDTSHPHDC 819 PL DC Sbjct: 669 VPLPRAECIKDC 680 >gi|255535913|ref|YP_003096284.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10] gi|255342109|gb|ACU08222.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10] Length = 1298 Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 87/251 (34%), Positives = 144/251 (57%), Gaps = 8/251 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +++ +I+E + +L +A+++A + S KS+FLA +SHEIRTPL +IGFS+++ Sbjct: 642 VSVQNITERVRTTVELKNAQQLAVRASKAKSEFLANMSHEIRTPLNGVIGFSDLLLKT-- 699 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 PL N +Y NYI+ SG +L I+ND+LD SKIESGKM L + + + V + I+++ Sbjct: 700 -PL-NEMQTQYLNYINESGESLLTIINDILDFSKIESGKMELMIDRTPVYDMVGQVINVI 757 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS 733 + +K + + + +P IL D VKQI +N+L NA+ FT G ++ + Sbjct: 758 LFQSQKKDLELLLNIEPGLPEILFLDESRVKQILINLLGNAVKFTLRGEIELKVQKLRMD 817 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 E + LR VRDTG+G+ + ++ F Q +S + GTGLGL ++ ++ Sbjct: 818 AERIALRFAVRDTGIGIPKDKQKRIFDAFTQEDSSVSKKYGGTGLGLTISNNILKYMGTS 877 Query: 792 FYIFSTPAKGT 802 + STP +G+ Sbjct: 878 LSLKSTPGEGS 888 >gi|307152913|ref|YP_003888297.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306983141|gb|ADN15022.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1613 Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 87/251 (34%), Positives = 140/251 (55%), Gaps = 13/251 (5%) Query: 567 EKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 EKNK L AKK A+ + KS+FLA +SHEIRTP+ A++GFS+++++ + P E Sbjct: 1101 EKNKALGRAKKEADIANKAKSEFLANMSHEIRTPMNAVLGFSDLLQD----IITEPEAKE 1156 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y I SG +L ++ND+LD+SKIE+GK+ LH+EP++L ++E + + A EK + Sbjct: 1157 YLEAISASGKTLLRLINDILDLSKIEAGKLTLHYEPINLRILIAEIEQIFRHQATEKGLN 1216 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VI 738 +++ +P + D ++QI LN++ NA FT + GQI I+ +N E + Sbjct: 1217 LKSEIDPKLPCGVELDEVRLRQILLNVVGNAFKFTDT-GQIKITVNCRANPEHSEKIDLK 1275 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V DTG+G++ K F Q + GTGLGL + + +V G ++ S Sbjct: 1276 ISVEDTGIGISPDNQTKIFNAFTQSEGQSNRKYGGTGLGLAITQRLVQMMGGTVHLQSQQ 1335 Query: 799 AKGTLIEIIFP 809 +G+ FP Sbjct: 1336 GQGSKFTFYFP 1346 >gi|297539506|ref|YP_003675275.1| PAS/PAC sensor hybrid histidine kinase [Methylotenera sp. 301] gi|297258853|gb|ADI30698.1| PAS/PAC sensor hybrid histidine kinase [Methylotenera sp. 301] Length = 681 Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 103/386 (26%), Positives = 190/386 (49%), Gaps = 38/386 (9%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S+L A+ D + I+ EG I N A G P E ++ F +Y T+ Sbjct: 168 SLLGASLDPLVTIDAEGKITDVNEASEHATGIPRERLIGTDFC------------NYFTD 215 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP-------------------FSSCYSL 556 ++ R+ +K+ + L++R + ++ F++ + Sbjct: 216 --TVKAREGYQKVFFDGFVRDYPLAIRHVSGRIMDVLYNASIYKDESGNVLGIFAAARDV 273 Query: 557 TMHDISEWK-QEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 T +I + K +EKN +L +K AE+ + KSDFL+ +SHE+RTPL AI+GF+++++ Sbjct: 274 TQQNILDQKLREKNIELERSKIAAEQANLAKSDFLSNMSHELRTPLNAILGFAQLLEGGT 333 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P + I ++G + D++N++LD++KIESG+ + EPV L + E S+ Sbjct: 334 PAP--TETQTKRLKEILKAGWYLTDMINEILDLAKIESGQTPMLLEPVLLTNLLFECQSM 391 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 + A E I + S N + + AD +KQ+ N+LSNAI + G + + + ++ Sbjct: 392 FEPNALESGIKLLFSMVNRMWSVRADQTKLKQVVSNLLSNAIKYNSEQGTVEVKCSESAL 451 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + + V+D G G++ +L + +PF ++ ++ EGTG+GL ++K +++ G + Sbjct: 452 GRIRISVKDNGAGLSAEKLAQLFQPFNRLGQEVGVK-EGTGIGLAVSKKLIEMMGGTIGV 510 Query: 795 FSTPAKGTLIEIIFPLYDTSHPHDCI 820 S G+ I D+ H H+ I Sbjct: 511 ESAVGVGSEFWIELDKDDSLHAHELI 536 >gi|71908921|ref|YP_286508.1| sensor histidine kinase [Dechloromonas aromatica RCB] gi|71848542|gb|AAZ48038.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 845 Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 84/241 (34%), Positives = 134/241 (55%), Gaps = 7/241 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A++ AE+ S KS FLA +SHE+RTPL I+GF+E++K + L NP + EYA Sbjct: 605 RLDDAREKAEEASRQKSAFLATMSHELRTPLNGILGFAELLKYE----LDNPSHQEYATV 660 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I +SG +L++VN++LD++KIE+G+M P L VSE ++ Q+ A K + + Sbjct: 661 IQQSGEHLLNLVNEILDLAKIEAGEMLFKRVPTPLAGLVSECVAGHQVTATAKGLGFDLN 720 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 A +P +++ D ++QI N+LSNA+ FT G I T + +E+ V DTG G+ Sbjct: 721 VAEGLPEQLVTDPLRLRQILNNLLSNAVKFTEQGK--ISLTVRPAGQEIAFAVSDTGAGI 778 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 L+ + F Q+ + GTGLGL L + + + G+ + S G+ + Sbjct: 779 PPESLDMVFEKFKQLESFLTREHGGTGLGLSLVRQLAEHMGGRVTLESAVGVGSTFTVYL 838 Query: 809 P 809 P Sbjct: 839 P 839 >gi|330811212|ref|YP_004355674.1| Two-component system, sensor kinase GacS [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379320|gb|AEA70670.1| Two-component system, sensor kinase GacS [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 916 Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 142/237 (59%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQLDYLGT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRT 688 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ Sbjct: 326 IEKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTG 745 + + ++ D +KQI N++SNAI FT G + ++ H + ++ + ++DTG Sbjct: 386 VYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEDEHEDSVQLRISIQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++N ++ + F Q NS + GTGLGL ++K +V+ G+ + STP +G+ Sbjct: 446 IGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLVEQMGGEIGVDSTPGEGS 502 >gi|149174262|ref|ZP_01852889.1| probable sensor/response regulator hybrid [Planctomyces maris DSM 8797] gi|148846807|gb|EDL61143.1| probable sensor/response regulator hybrid [Planctomyces maris DSM 8797] Length = 2453 Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 83/259 (32%), Positives = 146/259 (56%), Gaps = 7/259 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI+ +Q + L A+++AE + KS FLA +SHEIRTP+TAI+G+ ++I Sbjct: 2047 TLLDITSQRQFEQSLKEARQMAEAANESKSAFLANMSHEIRTPMTAIMGYIDLIDEL--- 2103 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + Y + + R+G +LDI+ND+LD+SKIE+GK+++ E S + + + S++ Sbjct: 2104 -IDHKIATAYLSTVRRNGEFLLDIINDILDLSKIEAGKLDIIRERFSPHQLLEDVCSIMD 2162 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A E R+ + + IP I +D + +KQI +N++ NAI FT G I + + Sbjct: 2163 VRAAENRLELDIFYYGKIPAEIESDPKRLKQILINLVGNAIKFTMKGSVKIFVSCNDQQL 2222 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + I + DTG+G+T + ++ +PF Q ++ GTGLGL +++ + + G+ + Sbjct: 2223 QFI--IVDTGIGITTRQQKRLFRPFSQGDHTVNREFGGTGLGLAISQRLANMLGGEICVE 2280 Query: 796 STPAKGTLIEIIFPLYDTS 814 S KG+ + D S Sbjct: 2281 SEKDKGSKFTVTIATGDIS 2299 >gi|303246259|ref|ZP_07332539.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492322|gb|EFL52194.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 992 Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 85/249 (34%), Positives = 139/249 (55%), Gaps = 15/249 (6%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 E +L+ K A+K KS+FLAR+SHEIRTPL A+IG S ++ R P+ +Y Sbjct: 244 ESIRLAELAKAADK---AKSEFLARMSHEIRTPLNAVIGMSHLLLKTRL----TPKQEDY 296 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I S + +L ++ND+LD SKIE+G + + P L+ + + ++++ L A EK++ Sbjct: 297 LAKIRSSADTLLRVINDILDFSKIEAGGLTIERIPFDLETVLGDVVNIMSLGAAEKQLEF 356 Query: 687 RTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVILRV 741 S +++P ++ D + Q+ LN++ NA+ FT S G++++ + + N + V Sbjct: 357 LLSVEDDVPFGLVGDPLRLGQVLLNLVGNAVKFTES-GEVLLEVRRQPSTSQNARLRFAV 415 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RDTGVG+T + E +PF Q S R GTGLGL +++ +V G + S P +G Sbjct: 416 RDTGVGLTAEQQEGLFRPFSQADESISRRYGGTGLGLSISQRLVALMGGDLEVRSVPGEG 475 Query: 802 TLIEIIFPL 810 + E F L Sbjct: 476 S--EFFFSL 482 >gi|126732976|ref|ZP_01748737.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata E-37] gi|126706593|gb|EBA05669.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata E-37] Length = 740 Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 90/261 (34%), Positives = 137/261 (52%), Gaps = 9/261 (3%) Query: 564 WKQEKNK---LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 W Q K L HA+K AE+ KS FLA +SHEIRTP+ II SE+++ G L N Sbjct: 197 WVQLKKTAAGLDHARKRAEEAERIKSAFLANMSHEIRTPMNGIIAMSELLEQ---GTL-N 252 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P + I S +L I+ND+LD SKIE+GKM +H EP V E +L A Sbjct: 253 PEQRSMTSTISSSAVALLAIINDILDFSKIEAGKMLVHAEPFDPINLVEEVATLFSPAAA 312 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K + I +P ++ D ++Q LN++ NA+ FT +G + I + + ++++ Sbjct: 313 AKGVEICVESVLEMPLMVMGDSARLRQCLLNVIGNAVKFTATG-NVHIWLNRSEDGQIVV 371 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 +V DTGVG+ +L+ + F QI ++ R +GTGLGL ++ ++ G S P Sbjct: 372 KVTDTGVGIAEDKLDHIFEEFSQIDSTHTRRYDGTGLGLAISLRLIRLMGGSLSARSRPD 431 Query: 800 KGTLIEIIFPLYDTSHPHDCI 820 +G++ E+ P T P I Sbjct: 432 EGSVFEMRLPFPATETPPGTI 452 >gi|158335122|ref|YP_001516294.1| two-component signal transduction sensor histidine kinase [Acaryochloris marina MBIC11017] gi|158305363|gb|ABW26980.1| two-component signal transduction sensor histidine kinase [Acaryochloris marina MBIC11017] Length = 927 Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 127/225 (56%), Gaps = 2/225 (0%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHE+RTPL AIIG+SE+++ + +G ++ I S +L+++N + Sbjct: 425 KSEFLANMSHELRTPLNAIIGYSEMLE-EDAEDMGQDDFVPDLQKISGSAKHLLELINAV 483 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+SK+E+G+M L+ E + V + +Q A+++ +I NI + AD V Sbjct: 484 LDLSKVEAGRMELYLESFEIAPMVKTIAATLQPIADKQSNMISLHCPENIGTLYADQTKV 543 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +Q N+LSNA FT S G++ ++ + + EEV+ ++DTG+GMT +LEK K F Q Sbjct: 544 RQSLYNLLSNACKFTES-GEVSLTISEDAGEEVVFSIKDTGIGMTPEQLEKVFKAFTQAD 602 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 S + GTGLGL + K ++ G + S GT I P Sbjct: 603 ASTTRKYGGTGLGLTITKQFIEMMGGHISVTSQYGYGTEFTIHLP 647 >gi|256831239|ref|YP_003159967.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256580415|gb|ACU91551.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1078 Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 89/268 (33%), Positives = 141/268 (52%), Gaps = 12/268 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K+ + L AK+ AE + K++FLA +SHEIRTPL I+G ++++ P Sbjct: 678 DITELKKTEAALLEAKETAETANRVKTEFLANMSHEIRTPLNGILGMMQLLRQTSLEP-E 736 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +Y+E + I + L ++ D+LDIS+IE+GKM+L P S E V + L + A Sbjct: 737 QEKYVELS--ITSAARLT-RLLADILDISRIEAGKMSLFNAPFSAAELVDSVVELFAVPA 793 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---- 734 EK + +R + +P +L D V+QI N++ NA+ +T G + ++ Sbjct: 794 REKGLRLRCAIHPGLPPLLVGDEARVRQILFNLVGNALKYTEQGDITLELFARDADLCRS 853 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E + +RV DTGVG+ + L +PF Q+ S EG GLGL + + +V+ G+ + Sbjct: 854 ECMCIRVVDTGVGIPAHMLSGVFEPFRQVEGSHTRSYEGAGLGLAIVQRLVELMQGEISV 913 Query: 795 FSTPAKGTLIEIIFPLYDTSH---PHDC 819 S P GT + + PL S P D Sbjct: 914 QSEPGAGTAVLVSLPLRAASEYCIPQDV 941 >gi|83312029|ref|YP_422293.1| sensor protein barA [Magnetospirillum magneticum AMB-1] gi|82946870|dbj|BAE51734.1| Sensor protein barA [Magnetospirillum magneticum AMB-1] Length = 1248 Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 104/356 (29%), Positives = 177/356 (49%), Gaps = 18/356 (5%) Query: 456 SILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 +I EA + GIA + NR +I+ N + KLFGY +++ + ++ + Sbjct: 591 AIFEAATVGIAFLKNR--VIVRGNPRLDKLFGYGPGELVGQSTRIWFADDAAFADVGGAY 648 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRI---IIKKLPFSSCYSLTMHDISEWKQEKNKL 571 E LS E+ L K++ RI I S + D+++ + Sbjct: 649 EALSRGEVHQREQEYL--RKDQSRFWCRISGSAIDPSDLSRGTVWMLEDVTQARATAEAQ 706 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 + AK AE + KSDFLA +SHEIRTP+ AIIG + + +PR +Y I Sbjct: 707 ARAKDAAEDAARTKSDFLANMSHEIRTPMNAIIGMAHLALKTDL----DPRQKDYVRKIQ 762 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 +SG +L I+ND+LD SKIE+GK+ + + LD+ + +L+ A K + + Sbjct: 763 QSGQHLLGIINDILDFSKIEAGKLEVEATEIHLDKVLENVGNLISEKATAKGLELLFDVG 822 Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--EEVILR--VRDTGV 746 +P ++ D + Q+ +N +NA+ FT + G+I+++ + +V+LR VRDTG+ Sbjct: 823 AGVPLDLMGDALRLGQVLINYANNAVKFTEA-GEIVVAVRLMEDLGPDVMLRFEVRDTGI 881 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+T+ + + + F Q S + GTGLGL ++K + + G + S P +G+ Sbjct: 882 GLTDEQKARLFQSFSQADTSTTRKFGGTGLGLAISKKLAELMGGSVGVDSVPGQGS 937 >gi|182412630|ref|YP_001817696.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839844|gb|ACB74096.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 929 Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 81/244 (33%), Positives = 138/244 (56%), Gaps = 6/244 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI++ ++ L AK+ A+ S KS FLA VSHE+RTPL I+G++++++ PL Sbjct: 448 DITQQREAARALQAAKEAADAASGAKSQFLASVSHELRTPLNGILGYTQILRRD---PLL 504 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + E I S +L ++ND+LD+SKIE+G++ LH +L E + A + A Sbjct: 505 GEKQREGIRVIHESAEHLLVLINDVLDLSKIEAGRIELHPGDFALAEFAAGAERVFAPRA 564 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 EK +L+ T+ A ++P + D ++Q+ N+L NA+ FT GG ++ S + ++ + Sbjct: 565 REKNLLLETALAPDLPEFVRGDEARLRQVVFNLLGNAVKFTAQGG-VVFSISSSAGGGLR 623 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG G+ +L + +PF Q+ S GTGLGL +++++V+ G+ + S P Sbjct: 624 FSVSDTGRGIAAADLSRIFEPFTQVGESTGA-ATGTGLGLAISRSLVERMGGRLQVESKP 682 Query: 799 AKGT 802 G+ Sbjct: 683 GWGS 686 >gi|86141300|ref|ZP_01059846.1| multi-sensor hybrid histidine kinase [Leeuwenhoekiella blandensis MED217] gi|85831859|gb|EAQ50314.1| multi-sensor hybrid histidine kinase [Leeuwenhoekiella blandensis MED217] Length = 906 Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 115/361 (31%), Positives = 183/361 (50%), Gaps = 24/361 (6%) Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 +LE DG + + +G I N + +FG ++++ L Q+ S + + Sbjct: 263 VDVLENLLDGYILFDAQGTIKDCNTLSTNIFGLSKKELIGSSIYALLPQDVTSA---FKS 319 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDISEWKQ---EKN 569 +I SL + L K+ LG+ KE L + + I+ ++ FS+ YS + S + + ++N Sbjct: 320 DISSLH-QNKLPKL-LGNRKEVDLKNKKGNIEPYEISFSNNYSEPVETFSIFIRDITQRN 377 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPLGNPRYIEY-A 627 AK AE+ + KS FL+ +SHEIRTPL I+G SE+ IKN L + + +E Sbjct: 378 DTLRAKASAERAAEAKSTFLSNMSHEIRTPLNVILGLSELLIKNG----LDDKKLLEKNL 433 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I S +L IV+D+LD SKIE+GK++L +L E +S S ++ A EK + + Sbjct: 434 EGISFSAKNLLSIVDDILDFSKIEAGKLSLQALDFNLKEVLSNLTSTFEIKAREKGLQLI 493 Query: 688 TSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHTSNEEVILRV 741 T+ IP I+ D + QI N++ NAI FT G Q+I TT I V Sbjct: 494 TTIDERIPDIIVGDQYRLNQIITNLIGNAIKFTKQGKITLELQLIEETTDKVTINFI--V 551 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ +L K F Q+ + + GTGLGL + +++ G ++ S P KG Sbjct: 552 TDTGIGIPKNQLPHIFKSFYQVDEPEHAKINGTGLGLSITHELINLQGGSLFVESEPGKG 611 Query: 802 T 802 + Sbjct: 612 S 612 >gi|332707075|ref|ZP_08427133.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332354100|gb|EGJ33582.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 907 Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 137/237 (57%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +++ AK AE + KS+FL+ +SHE+RTPL I+G+++++K + R + Sbjct: 434 EIAEAKDKAEVANQAKSEFLSNMSHELRTPLNGILGYAQILKREHNLSF---RQTDGLEI 490 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I +SG +L ++ND+LD+SKIE+ KM L+ + + + + ++++ A EK IL + Sbjct: 491 IHKSGIHLLTLINDILDLSKIEARKMELYPDDIHFANFLDSVVGVIKMRALEKDILFKYQ 550 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTG 745 +N+P I+AD + ++Q+ LN+L NAI FT G + + + + + DTG Sbjct: 551 TESNLPIGIIADEKRLRQVLLNLLGNAIKFTEQGQVTLGVRVKEYQVNTSTICFDIIDTG 610 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 VGM +L K PF Q+ ++Q+ R EGTGLGL + K +V+ G+ + S KG+ Sbjct: 611 VGMNPQQLHKIFLPFEQVGDTQR-RSEGTGLGLAITKQLVELMGGELKVTSELGKGS 666 >gi|168703357|ref|ZP_02735634.1| GAF sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 1156 Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 80/255 (31%), Positives = 139/255 (54%), Gaps = 4/255 (1%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + K++L + E+ S +KSDFLA +SHE+RTPL + + ++++ + R G L Sbjct: 452 EATRAKSELQVQARELERASRYKSDFLANMSHELRTPLNSSLILAKLLADNRDGNL-TAE 510 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + YA I +GN +L ++ND+LD+SKIE+G M + PV L + + Q A+EK Sbjct: 511 QVRYAETIRAAGNDLLALINDILDLSKIEAGHMEVRPGPVPLASLAEDLTRVFQPIADEK 570 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ A P I D + ++Q+ N+LSNA+ FT SG ++ + + + + V Sbjct: 571 KLGFAVRLAPGCPEGIETDRQRLEQVLKNLLSNALKFTESG-EVALEASAAPGDRIAFAV 629 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RDTG+G+ ++ + + F Q + + GTGLGL +A+ + G ++ S P +G Sbjct: 630 RDTGIGIAEHQQQMVFEAFRQADGTTNRKHGGTGLGLSIARELARLLGGDIHLASEPGRG 689 Query: 802 TLIEIIFP-LYDTSH 815 + + P Y+ +H Sbjct: 690 STFTVTIPTTYNPAH 704 >gi|167623151|ref|YP_001673445.1| hybrid sensory histidine kinase BarA [Shewanella halifaxensis HAW-EB4] gi|167353173|gb|ABZ75786.1| Hpt sensor hybrid histidine kinase [Shewanella halifaxensis HAW-EB4] Length = 929 Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 91/257 (35%), Positives = 141/257 (54%), Gaps = 11/257 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ S KS+FLA +SHE+RTPL +IGF+ +++K PL + + +Y Sbjct: 286 ELDMAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKT----PLHSSQQ-DYIR 340 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS +L I+ND+LD SK+E+GKM L P SL E + E ++L+ A EK + Sbjct: 341 TIERSATNLLSIINDILDFSKLEAGKMVLENIPFSLRETLEETVTLLSSSAREKELEFVI 400 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDT 744 + IP + D QI N++ NAI FT G Q+ + ++V LR + DT Sbjct: 401 DVDSRIPEDVTGDAMRFSQIITNLVGNAIKFTDKGSVQLKLQLEEIKEQKVHLRCEIIDT 460 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + FGQ +S R GTGLGL + K +++ G+ +S P +G+ Sbjct: 461 GIGIDKQQQSSLFQAFGQADSSISRRFGGTGLGLVITKRLINRMGGQIGCYSEPKQGSTF 520 Query: 805 EIIFPLYDTSHP-HDCI 820 PL + +P HD + Sbjct: 521 WFSLPLNISQYPIHDTL 537 >gi|251797083|ref|YP_003011814.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] gi|247544709|gb|ACT01728.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] Length = 642 Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 113/379 (29%), Positives = 190/379 (50%), Gaps = 36/379 (9%) Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS--------TNRAVSKLFGYPVED 491 T+++++K++ V + S+ + D I + +G I+ T R VS+L G + Sbjct: 126 TKMSEQKLQESVERYTSLKKYNHDTIISFDLQGKIIGGNVMAEKLTGRLVSELIGTSIAS 185 Query: 492 ILRK-PFTVFLEQNTP-SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 ++ + L N P + + + ++L +D GS E + II+ Sbjct: 186 VIGEDKLARILADNEPYTEIESSINDVLHVD----------GSYVEVLVTIAPIIVNNR- 234 Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 S + L + DI+E K KL K+ A + + KS+F+A +SHEIRTP+ +IG +++ Sbjct: 235 -SIGFYLLIKDITEQK----KLLIEKETAVRTNEVKSEFMAMMSHEIRTPMNGVIGMTDL 289 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + PL + EY I +SG +L I+ND+LD SK+ESG L EP +L+ A++ Sbjct: 290 LLDT---PLDEEQK-EYVTIIRKSGETLLGIINDILDFSKVESGNAELTEEPFNLNTAIA 345 Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 E + A EK + + + IP+ I+ D ++QI LN++ NAI FTP G I +S Sbjct: 346 ETFDTLMPKAMEKNLEFKVCISPGIPQNIIGDSLKIRQIMLNLIGNAIKFTPR-GSIGVS 404 Query: 729 TTHTSNEEVILR----VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 E +R V+DTG+G+ ++ +PF Q + + GTGLGL + + + Sbjct: 405 IDKAEAEGANVRLHFAVKDTGIGVPEDKVPYLFEPFYQADHFMVRQEGGTGLGLAITRKL 464 Query: 785 VDANMGKFYIFSTPAKGTL 803 V G+ Y P GT+ Sbjct: 465 VQLMDGQIYCEPNPGGGTI 483 >gi|91792026|ref|YP_561677.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans OS217] gi|91714028|gb|ABE53954.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans OS217] Length = 853 Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 88/271 (32%), Positives = 153/271 (56%), Gaps = 18/271 (6%) Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 +K+E ++SL +SLT +I+ KQ + +L + + AE+ + KSDFLA + Sbjct: 237 SKQESIISLN-----------HSLTA-EIAVRKQTEQELINMRDSAEQANRSKSDFLANM 284 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHEIRTP+ AIIGF +++ G L + + ++ + S + +++ND+LD++K+E+ Sbjct: 285 SHEIRTPMNAIIGFVDIVLE---GDL-DQKQSKHLMTVRNSAKDLHNLLNDILDVAKLEA 340 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNI 711 GK+ L P S+ + + + I +L A +K ++ A ++P + L D +KQ+ +N+ Sbjct: 341 GKVELESAPFSVKKLLGQVIKTFELKAKDKGLVFIQRIAEDLPAQFLGDALRLKQVLMNL 400 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 + NAI FT SG I I+ + E++ +RDTG+G+ +LE + F Q S + Sbjct: 401 IGNAIKFTASGS-ITIAVEQINQEQLQFIIRDTGIGIAKDKLEHIFESFTQADTSTSRKY 459 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GTGLG ++K +V+ GK ++ S GT Sbjct: 460 GGTGLGTTISKRLVELMGGKIWLESDEGVGT 490 >gi|316931476|ref|YP_004106458.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] gi|315599190|gb|ADU41725.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] Length = 837 Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 84/276 (30%), Positives = 139/276 (50%), Gaps = 5/276 (1%) Query: 543 IIIKKLPF-SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 + K +P LT D+++ + + L + E K DF+ VS+E+R+PLT Sbjct: 563 LACKTMPLPDGATMLTFQDLTDTENVERALRERNEALETADRIKIDFVHHVSYELRSPLT 622 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 IIGF+ + + GPL + + EY NYI S N ++ I+N++LD++ I++G M L+ P Sbjct: 623 TIIGFAHFLSDSSTGPLTD-KQAEYVNYITTSTNALMAIINNILDLASIDAGAMTLNLGP 681 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 + + +A+ A +Q +I ++ I R + D R V Q+ N+L+NA+ F+P Sbjct: 682 IDIRKAIDAAAEGIQDRLARDQIALQVDVDPEIDRFVGDERRVVQVLYNLLANAVDFSPP 741 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 G + + T V V D G G+ ++ F P Q R G GLGL L Sbjct: 742 QGTVRL-TVRRGETRVAFTVADAGPGIAPAFKDRMFDLFESDP--QGSRHRGAGLGLSLV 798 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 ++ V+ + GK + ST +GT + FPL ++ H Sbjct: 799 RSFVELHGGKVEVESTVGRGTSVTCEFPLEQSAQRH 834 >gi|6166489|gb|AAF04854.1|AF197912_1 histidine protein kinase homolog GacS [Azotobacter vinelandii] Length = 905 Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 141/251 (56%), Gaps = 10/251 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L ++ A + S KS+FLA +SHEIRTPL IIGF+ +++ PR +Y N Sbjct: 257 ELDMVRREALEASRIKSEFLANMSHEIRTPLNGIIGFTNLLQKCEL----TPRQHDYLNT 312 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I +S + +LDI+N++LD SKIE+GK+ L P +L E + + ++++ A+ K + + + Sbjct: 313 IQKSADSLLDIINEILDFSKIEAGKLVLEHTPFNLRELIQDTLTILAPAAHAKHLELVSL 372 Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 + P L D + ++Q+ N++SNAI FT G + + EE + + V DTG Sbjct: 373 IYRDTPLALNGDPQRLRQVLTNLISNAIKFTNEGTIAVRAMVEDIGEEFAQLRISVHDTG 432 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT--L 803 +G++ +L + F Q NS + GTGLGL ++K +++ G+ + S P +G+ Sbjct: 433 IGLSQEDLNALFQAFSQADNSLTRQAGGTGLGLVISKRLIEQMGGEIGVNSVPGEGSEFW 492 Query: 804 IEIIFPLYDTS 814 I + PL D S Sbjct: 493 IRLSLPLDDHS 503 >gi|260177204|gb|ACX33927.1| putative response regulator receiver sensor signal transduction histidine kinase [uncultured prokaryote AT5] Length = 378 Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 88/268 (32%), Positives = 146/268 (54%), Gaps = 11/268 (4%) Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 L F S + T+ + ++ + + + +++ E S +KS FLA +SHE+RTPL AIIG + Sbjct: 113 LDFESTITKTIRHVEVLREARRREAENQRL-EAASHNKSQFLADMSHELRTPLNAIIGLT 171 Query: 608 EVIKN--QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 E++ + RFG + +E ++ +G +L ++N++LD+SKIE+GK+ L+ EPV+L Sbjct: 172 EMMVSNAARFG---TEKALEPLRRVNAAGTHLLSLINEVLDLSKIEAGKLELNPEPVNLA 228 Query: 666 EAVSEAISLVQLYA--NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 + E I A N+ R+++ +N+ AD +KQI LN+LSNA FT G Sbjct: 229 RVIDEVIGTAGQLAEKNQNRLIVEAQ--DNLGAFTADPLRLKQILLNLLSNACKFTKEGD 286 Query: 724 QII-ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 + + + V L V DTG+G+T + K + F Q + R GTGLGL L++ Sbjct: 287 VALRVRKVADGRDWVELAVADTGIGLTAEQQAKLFQEFTQADSLTARRYGGTGLGLALSR 346 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + G + S P KG++ + P+ Sbjct: 347 KLARMMGGDVTVASEPGKGSVFTVRLPV 374 >gi|83950813|ref|ZP_00959546.1| sensor histidine kinase/response regulator [Roseovarius nubinhibens ISM] gi|83838712|gb|EAP78008.1| sensor histidine kinase/response regulator [Roseovarius nubinhibens ISM] Length = 729 Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 103/380 (27%), Positives = 184/380 (48%), Gaps = 28/380 (7%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLF--------GYPVEDILR---KPFTVFL 501 +L +E DG A+ + +G ++ NRA F G ++L+ + V + Sbjct: 80 RLWQSIETIPDGFALFDEDGRLVMANRAYLLPFDGLTAVGPGVSYMEMLQFCTEEGIVDI 139 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561 P+ Y+ E D + L + + ++R++ ++ P SL + DI Sbjct: 140 GDMAPAAWREYMRERWQSDAPGP-RIVRLWNGR-----AIRLLDQRAPSGDMVSLAL-DI 192 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 + + K L AK AE S KS FLA +SHEIRTP+ ++G +++++ + Sbjct: 193 TAEVRSKEVLRRAKHRAEAASRAKSAFLANMSHEIRTPMNGVMGMADLLRETDL----DE 248 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 YA I S +L I+ND+LD SK+E+ +++L + L+ + E I L+Q A + Sbjct: 249 DQALYATTIRNSAEALLGIINDVLDYSKVEADRLSLQLDGFDLERCLHEIILLMQPKARD 308 Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EV 737 + + + + +P R+ D ++Q+ N++ NA+ FTP G ++I S E E+ Sbjct: 309 QGVDVWLDYDLFLPTRLRGDGGRIRQVLTNLIGNAVKFTPE-GHVLIRVVGVSAEGRAEI 367 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V DTG+G+ ++ F Q+ +Q R EGTGLGL +A+ ++ G+ ++ S Sbjct: 368 HVTVEDTGIGIAPDKIGHVFGEFNQVEEAQNRRFEGTGLGLAIAQKLIRLMGGEIWVESA 427 Query: 798 PAKGTLIEIIFPLYDTSHPH 817 P +G++ L D P Sbjct: 428 PGQGSVFGFTITL-DIEEPQ 446 >gi|51891981|ref|YP_074672.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] gi|51855670|dbj|BAD39828.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] Length = 837 Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 127/225 (56%), Gaps = 3/225 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+F+ VSHE+RTPLT+I+G+ ++ GPL + E+ N + R+ N + +++NDL Sbjct: 610 KSEFVNTVSHELRTPLTSIMGYLSLVLAGTAGPLQEQQR-EFLNIVARNTNRLANLINDL 668 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LDI +IESG+M +H P SL V + ++ A +K + + +P I AD + Sbjct: 669 LDIQRIESGRMPIHLSPTSLASVVKQVAETFRVQAEQKGLSFTVNVPEEVPLINADPDRL 728 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 QI N++SNA+ +T GG + + ++V L V DTG+G++ + ++ + F + Sbjct: 729 TQIIANLVSNAVKYTKEGG--VTVSVSAVGDQVELEVADTGIGISPADQKRIFEKFYRAE 786 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + GTGLGLP+ K MV+ + G + S P +G+ + FP Sbjct: 787 HPYVREVGGTGLGLPIVKTMVEEHGGDLQLESQPGRGSRFIVSFP 831 >gi|325923492|ref|ZP_08185146.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC 19865] gi|325546028|gb|EGD17228.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC 19865] Length = 537 Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 145/245 (59%), Gaps = 9/245 (3%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE + K++FL+R SHE+RTPL AI+G+++V++ L P + + +I +G + Sbjct: 170 AETANRAKTEFLSRSSHELRTPLNAILGYAQVLEMD----LPEPAHRRHLQHILGAGRHL 225 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ +LLDI++IE+ +++L EP+S+ AV EA+ L+ A++ I ++ + + + Sbjct: 226 LGLITELLDIARIEADQLDLSPEPISVRAAVHEALGLIAPDADKYGIALQPAAIDGPWTV 285 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 AD + ++Q+ LN+LSNA+ F +GGQ+ +S E+V + V D G G+T ++E+ Sbjct: 286 RADAQRLRQVLLNLLSNAVKFNRTGGQVQVS-AQPDGEQVRITVADQGAGLTPAQIERLF 344 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD--TSH 815 PF ++ +++ EGTGLGL L+K +++A G+ + S+ G I P D S Sbjct: 345 TPFERL-GAERSAVEGTGLGLALSKRLIEAMGGRIGVDSS-RDGARFWIALPQGDPQRSE 402 Query: 816 PHDCI 820 P I Sbjct: 403 PARTI 407 >gi|108804107|ref|YP_644044.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM 9941] gi|108765350|gb|ABG04232.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM 9941] Length = 1069 Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 109/385 (28%), Positives = 189/385 (49%), Gaps = 30/385 (7%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR---KPF 497 R + +E Q + E + D + + + EG I+ N + GY +++LR + F Sbjct: 177 RRQQEALEESQRQFRDLFERSVDALLVHDGEGNIVDCNAEACRSLGYTRQELLRMNVRDF 236 Query: 498 TVFL---EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF---- 550 L E TP L E + + LG + + + ++ P Sbjct: 237 ATNLLRREDRTPG--EPTLWERALSGEPGVVAGVHLGEHRRRDGTTFPVEVRVGPVVYGG 294 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 DI+E K+ + +L AK+ AE S KS+F+A +SHEIRTP+ +IG +E++ Sbjct: 295 RRMILAAARDITERKRIEEELREAKEQAEAASRAKSEFVANMSHEIRTPMNGVIGMAELL 354 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + PL P EYA I SG +L I+ND+LD SKIE+G+++L P + + V E Sbjct: 355 LDT---PL-TPEQREYARTIRSSGEALLAILNDILDFSKIEAGRLSLERIPFEIHKEVEE 410 Query: 671 AISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 +SL+ A+ K + + +P ++ D ++Q+ N++ NAI FT G++++S Sbjct: 411 VVSLLAPRAHAKGLELICFIEPGVPPLIKGDPFRLRQVLTNLIGNAIKFTEE-GEVVVSV 469 Query: 730 THTSNE----------EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 + + E E+ LR V+D+G+G+ + + + F Q S R GTGLG Sbjct: 470 SLSKEEKSAPAGERGGEIELRFEVKDSGIGIQEEQQKHLFEAFSQADASTTRRYGGTGLG 529 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGT 802 L +++ +V+ G+ + S+P +G+ Sbjct: 530 LAISRQLVEMMGGEIGLKSSPKEGS 554 >gi|41016070|dbj|BAD07401.1| histidine kinase [Cochliobolus heterostrophus] Length = 359 Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 90/235 (38%), Positives = 130/235 (55%), Gaps = 11/235 (4%) Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 K+ E+ + KS FLA VSHE+RTPL +IG SE++K PL N YA+ I + Sbjct: 11 KLKEEAAKAKSLFLANVSHELRTPLNGVIGMSELLKAS---PL-NGEQSGYADSIRVCAD 66 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L I+NDLLD SK+E+GKMN+ P+SL+E ++E + + Y N +R L P Sbjct: 67 TLLSIINDLLDYSKLEAGKMNVMEMPISLNETIAEVVRALA-YTNAERGLKTIEQLELDP 125 Query: 696 RIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTN 750 +L D + QI +N+LSN+ FTP G + + E V V DTG+G+ + Sbjct: 126 EMLVMGDPVRLHQILMNLLSNSYKFTPRGSVTVRAVVDQETSEWADVTCSVIDTGIGIPD 185 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM-GKFYIFSTPAKGTLI 804 + +K PF QI +S GTGLGL + KA+++ M G + S P KGT + Sbjct: 186 EQKQKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHGTVRLDSQPGKGTTV 240 >gi|192360517|ref|YP_001982372.1| putative sensory box histidine kinase/response regulator [Cellvibrio japonicus Ueda107] gi|190686682|gb|ACE84360.1| putative sensory box histidine kinase/response regulator [Cellvibrio japonicus Ueda107] Length = 1232 Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 81/252 (32%), Positives = 141/252 (55%), Gaps = 7/252 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+SE K + L AK+ AE+ S K FLA +SHEIRTP+ AIIGF+E++ + Sbjct: 653 DLSERKAMEQDLVAAKERAEQASIAKGMFLANMSHEIRTPMNAIIGFTELLLDSAL---- 708 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +P +++ + +S +L ++ND+LD +K+E G + L SL + + ++ +Q+ A Sbjct: 709 DPVQLKHMQTVRQSARSLLGLLNDILDTAKLERGALELDMHVFSLKQLCQQIMAELQIQA 768 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 ++K + + + + P ++L D ++Q+ +N+L NAI FT + G++ +S E V Sbjct: 769 DKKGLGLHLDYVHTTPDQVLGDELRIRQVLVNLLGNAIKFTLT-GEVRLSVD-VLGEGVR 826 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 ++V+DTG+G+ +E PF Q S R GTGLG +A+ + + GK + S Sbjct: 827 MQVQDTGIGIAVERIEHIFTPFTQADASMARRFGGTGLGTTIARQLTELMGGKISVTSVE 886 Query: 799 AKGTLIEIIFPL 810 +G+ + PL Sbjct: 887 GQGSCFVVWLPL 898 >gi|307942838|ref|ZP_07658183.1| multi-sensor signal transduction histidine kinase [Roseibium sp. TrichSKD4] gi|307773634|gb|EFO32850.1| multi-sensor signal transduction histidine kinase [Roseibium sp. TrichSKD4] Length = 812 Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 98/354 (27%), Positives = 181/354 (51%), Gaps = 6/354 (1%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP-SVMNHYLTEI 516 LE S+ +A+ +G + N A S+++ + + + + P LE S + Sbjct: 451 LENLSEAVAVFGSDGRLRLWNPAFSRIWNFEEDRLSQLPHVNQLESTCALSPAEQEAWDR 510 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL-TMHDISEWKQEKNKLSHAK 575 LS ++ LE T + + E+ + +P +L T D+++ + L Sbjct: 511 LSANVTSLLENRTPVANRMERHDGAVLDYATVPLPDGGTLVTFVDVTDSVNVERALVEKN 570 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 + E+ K+ F+ VS+E+R+PLT IIGF++++ + +FG L + + EYA+YI S + Sbjct: 571 EALEQADELKNAFIQHVSYELRSPLTNIIGFAQLLTDPKFGDL-SEKQGEYADYIRSSSS 629 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L I+ND+LD++ +++G M L V + V A+ ++ E RI +RT +NI Sbjct: 630 ALLAIINDILDLATLDAGIMELELSEVDVAATVEAAVEGLKDRLAESRINLRTDVPDNIG 689 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 ++AD + ++Q+ N++SNA+ ++ G ++ + +E V V+D G G+ L + Sbjct: 690 SMVADEKRLRQVLYNLISNAVRYSEEEG-VVDVVCNRKDEAVEFVVKDHGCGIPADILTQ 748 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F + ++ R +G GLGL + K+ V+ + GK I S KGT + FP Sbjct: 749 VFNRF--VGHNAGARRQGAGLGLSIVKSFVELHGGKVDINSVEGKGTTVTCSFP 800 >gi|291279597|ref|YP_003496432.1| hypothetical protein DEFDS_1208 [Deferribacter desulfuricans SSM1] gi|290754299|dbj|BAI80676.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 816 Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 84/248 (33%), Positives = 138/248 (55%), Gaps = 8/248 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KNQRFGPLGNP 621 E K +K +L K K +K++F+A +SHE+RTPL +I+G +E+I KN + + Sbjct: 265 ELKVQKIELEEYSKRLNKLQQYKNEFIANMSHELRTPLNSIVGLTELILKNNQL----DN 320 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 E I+ SG +L+I+ND+LD+SKIESGK++L E + L E + ++++ NE Sbjct: 321 ELKEKLKIINLSGKQLLNIINDILDLSKIESGKIDLEIEEIDLTETIDYVSNIIKPQCNE 380 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 K I + F I D + QI LN+LSN++ +T G +I + +I+ V Sbjct: 381 KNISFKVIFKAKNYLINTDKYKLTQILLNLLSNSVKYTEENG-LIELIIEEDTKYIIIHV 439 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +DTG+G+ ++ +PF + ++ +GTGLGLPL K +V+ GK + S +G Sbjct: 440 KDTGIGIPEDLMQNLFEPF--VTMGRKFNVQGTGLGLPLTKKLVNLLGGKIAVKSKVGEG 497 Query: 802 TLIEIIFP 809 T+ + P Sbjct: 498 TIFTVYIP 505 >gi|170077617|ref|YP_001734255.1| two-component hybrid sensor kinase/response regulator [Synechococcus sp. PCC 7002] gi|169885286|gb|ACA98999.1| two-component hybrid sensor kinase and response regulator with PAS and HAMP domains [Synechococcus sp. PCC 7002] Length = 1280 Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 139/245 (56%), Gaps = 11/245 (4%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI++ + + +L AK+ AE+ + KS+FLA +SHEIRTP+ A+IG +E++++ Sbjct: 703 TITDITDKVEAEIQLKLAKEDAEQANRAKSEFLATMSHEIRTPMNAVIGMAELLRDTDL- 761 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + E+ + I SG+ +L I+ND+LD SKIESGK L +P +L + + L+ Sbjct: 762 ---TAQQQEFIDIIRNSGSNLLAIINDILDFSKIESGKFELELQPFNLQTCLENCLDLMS 818 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII----ISTTH 731 A K I + ++P ++ D+ +QI LN+L NA+ FT G + + T Sbjct: 819 TRAIAKPIYLSYILDPDVPHHLMGDVTRFQQIMLNLLGNAVKFTNRGDVSLWVQKVPTAT 878 Query: 732 TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 ++V LR + DTG+G+ ++ + +PF Q S R GTGLGL ++K +V+ Sbjct: 879 GDGDQVCLRFAILDTGIGIPAQQMTRLFQPFSQGDASTSRRYGGTGLGLVISKRLVELMG 938 Query: 790 GKFYI 794 GK ++ Sbjct: 939 GKLWV 943 >gi|167625908|ref|YP_001676202.1| histidine kinase [Shewanella halifaxensis HAW-EB4] gi|167355930|gb|ABZ78543.1| histidine kinase [Shewanella halifaxensis HAW-EB4] Length = 885 Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 140/249 (56%), Gaps = 7/249 (2%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E Q K+ AK+ AEK + KS FLA +SHEIRTPL IIG S+++ + N Sbjct: 359 INERHQNVLKILQAKQEAEKANQAKSSFLANMSHEIRTPLNGIIGMSDIMAGTKLTATQN 418 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 EY I+ S +L ++ND+LD+SKIESG +++ + E V + +++V Sbjct: 419 ----EYLQTIETSSQTLLILINDILDLSKIESGNLSITNTDADITEVVYDTLTIVLAKIA 474 Query: 681 EKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE-EV 737 EK + + N+ P +++ D ++Q+ +N+LSNA+ FT GG +++IS ++T++ ++ Sbjct: 475 EKNLTLEVEIDNDTPYLISLDEHRMRQVLVNLLSNAVKFTHEGGVKVVISCSNTADYCDL 534 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 ++ + D+G+G+ + + PF Q ++ GTGLGL + K ++ G+ + S Sbjct: 535 LISIHDSGIGIAKEKQQHIFSPFTQEDDTTTREFGGTGLGLAICKQLITLMGGEISLISE 594 Query: 798 PAKGTLIEI 806 +G I Sbjct: 595 KGEGCCFSI 603 >gi|258593327|emb|CBE69666.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 571 Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 84/269 (31%), Positives = 141/269 (52%), Gaps = 24/269 (8%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ ++L + + S HKS+FLA +SHE+RTPL AI+GF+++I + +G + N Sbjct: 296 RERTSQLEETNRDLSRASRHKSEFLANMSHELRTPLNAILGFTDLIIDGIYGQVPN-ELR 354 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E I +G +L ++ND+LD+SKIE+G+M L+ SL + IS + A EKR+ Sbjct: 355 ESMEDIRINGRHLLRLINDVLDLSKIEAGQMRLNLGEYSLQSLIDSVISATRSLATEKRL 414 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST--------------- 729 + ++P L D + + Q+ +N++ NAI FTP GG + ++ Sbjct: 415 ELVARVEADLPPALGDSKRMTQVLMNLVGNAIKFTPGGGSVNVTAKSVSSSEFQVSSSQP 474 Query: 730 --------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 T TS + + + V DTG+G+ EL+ F Q+ +S G+GLGL +A Sbjct: 475 ETRNPKPETPTSPDFIEISVADTGIGIPAEELKSIFGEFRQVDSSITREYGGSGLGLSIA 534 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 K +V+ + G + S +G+ + PL Sbjct: 535 KRLVEMHRGSIWADSQVGRGSTFYVRIPL 563 >gi|226945757|ref|YP_002800830.1| alginate regulatory hybrid histidine protein kinase GacS [Azotobacter vinelandii DJ] gi|226720684|gb|ACO79855.1| alginate regulatory hybrid histidine protein kinase GacS [Azotobacter vinelandii DJ] Length = 905 Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 141/251 (56%), Gaps = 10/251 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L ++ A + S KS+FLA +SHEIRTPL IIGF+ +++ PR +Y N Sbjct: 257 ELDMVRREALEASRIKSEFLANMSHEIRTPLNGIIGFTNLLQKCEL----TPRQHDYLNT 312 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I +S + +LDI+N++LD SKIE+GK+ L P +L E + + ++++ A+ K + + + Sbjct: 313 IQKSADSLLDIINEILDFSKIEAGKLVLEHTPFNLRELIQDTLTILAPAAHAKHLELVSL 372 Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 + P L D + ++Q+ N++SNAI FT G + + EE + + V DTG Sbjct: 373 IYRDTPLALNGDPQRLRQVLTNLISNAIKFTNEGTIAVRAMVEDIGEEFAQLRISVHDTG 432 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT--L 803 +G++ +L + F Q NS + GTGLGL ++K +++ G+ + S P +G+ Sbjct: 433 IGLSQEDLNALFQAFSQADNSLTRQAGGTGLGLVISKRLIEQMGGEIGVNSVPGEGSEFW 492 Query: 804 IEIIFPLYDTS 814 I + PL D S Sbjct: 493 IRLSLPLDDHS 503 >gi|209525380|ref|ZP_03273921.1| GAF sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209494231|gb|EDZ94545.1| GAF sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 625 Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 83/251 (33%), Positives = 134/251 (53%), Gaps = 6/251 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQRFGPLG 619 K+ L A A+ + KS+FLA +SHE+RTPLT +IG S + + F L Sbjct: 227 KERTQALHDALLAAQCANRAKSEFLATMSHELRTPLTHVIGISSTLLRLYSQPDNFPALP 286 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + Y I SG +L ++ND+LD+S++ESGK L F SL + + + ++ +A Sbjct: 287 LEKQKHYLQTIHDSGENLLALINDILDLSQVESGKTVLKFSEFSLQKLAQQCLHTLRDFA 346 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 EK + + + AD R V+QI LN+LSNAI FTP GG++ ++ + ++ I Sbjct: 347 KEKGVNVNLQIKVDQDLFRADYRRVRQILLNLLSNAIKFTPKGGRVTLTVSR-KDKTAIF 405 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 +V+DTG+G++ + + F Q+ + + + GTGLGL L K +V+ + G S Sbjct: 406 QVKDTGIGISKEQQSLLFEKFQQLDSPYRRQYGGTGLGLALTKQLVELHGGSIQFESEVG 465 Query: 800 KGTLIEIIFPL 810 GT + P+ Sbjct: 466 LGTKFTVYIPI 476 >gi|332521563|ref|ZP_08398017.1| PAS sensor protein [Lacinutrix algicola 5H-3-7-4] gi|332042962|gb|EGI79161.1| PAS sensor protein [Lacinutrix algicola 5H-3-7-4] Length = 1514 Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 134/241 (55%), Gaps = 3/241 (1%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L K+ A+ KS FLA +SHE+RTP+ +IIGF+ ++ Q GPL N + Sbjct: 1273 ELEKEKEKAQSADLMKSAFLATMSHELRTPMNSIIGFTGILLKQLAGPL-NDEQKKQLTM 1331 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + SG +L ++ND+LD+SKIE+GK+N+ + E + + I+ + A +K + I+T Sbjct: 1332 VKSSGESLLSLINDILDVSKIEAGKLNVAYSAFKYLEILEKTIAFLTPQAEKKGLKIKTE 1391 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 +N I +D R V+QI LN++SNAI F+ G II VI ++ D G+G+ Sbjct: 1392 ISNFDIVIESDERRVEQILLNLISNAIKFSNKG--IISIKVKLEGNFVITKIIDQGIGIE 1449 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ +PF Q+ R EGTGLGL ++K++V+ G+ + S +G+ P Sbjct: 1450 AKHIKTLFEPFVQLEAGLSRRHEGTGLGLSISKSLVEKLGGEILVKSQLGEGSTFTFKLP 1509 Query: 810 L 810 L Sbjct: 1510 L 1510 >gi|309790216|ref|ZP_07684788.1| sensory box histidine kinase/response regulator [Oscillochloris trichoides DG6] gi|308227801|gb|EFO81457.1| sensory box histidine kinase/response regulator [Oscillochloris trichoides DG6] Length = 906 Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 86/264 (32%), Positives = 142/264 (53%), Gaps = 25/264 (9%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS------EVIKN 612 D+SE + +L AK+ AE + KS FLA +SHEIRTP+ A+IG + ++ + Sbjct: 376 RDVSERVRGTAELVRAKEAAEAATMAKSSFLATMSHEIRTPMNAVIGMTTLMLDTDLTRE 435 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 QR +YA I SG+++L ++N++LD SKIESG M L +P SL + E Sbjct: 436 QR----------QYAETIRTSGDMLLALINNILDFSKIESGHMELEQQPFSLHACIEEVN 485 Query: 673 SLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 L+ A EK I++ + +P +++ D V+QI +N++SNAI FT + G++ + + Sbjct: 486 ELLGPKAAEKGIVLTGMVSGQVPAMISGDSTRVRQILVNLISNAIKFT-NVGEVTVRASA 544 Query: 732 TSNEE-------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 +E + + V DTG+G+ +++ +PF QI S R GTGLGL +++ + Sbjct: 545 RPDEALSGEHLIITITVADTGIGIPEDRMDRLFRPFSQIDASTTRRFGGTGLGLAISRRL 604 Query: 785 VDANMGKFYIFSTPAKGTLIEIIF 808 + G + S G+ + F Sbjct: 605 SELMGGSITVQSKVGVGSSFRVTF 628 >gi|73670466|ref|YP_306481.1| two component system histidine kinase [Methanosarcina barkeri str. Fusaro] gi|72397628|gb|AAZ71901.1| two component system histidine kinase [Methanosarcina barkeri str. Fusaro] Length = 729 Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 88/252 (34%), Positives = 142/252 (56%), Gaps = 3/252 (1%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+E K + L K+IAE + KS+FLA +SHE+RTPL +IIGF++++ Q +G L Sbjct: 463 RDITESKAAET-LLQEKQIAEAANRTKSEFLANMSHELRTPLNSIIGFADLLYEQVYGEL 521 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N R ++ I +SG +L+++N +LD+SKIE+GKM L ++ L ++ +L+ Sbjct: 522 -NERQLKSVGNISKSGKHLLNLINGILDLSKIEAGKMELSYKQFELASKLNIIKNLLSPI 580 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A+ K + I S +++ I AD QI N++ NAI F+ G + I + V Sbjct: 581 ADRKNVQIEISIDSSLSSIYADEARFVQIMYNLVDNAIKFSYENGLVKIE-ARKKGDLVE 639 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V DTG+G+ + K KPF Q+ + + +GTGLGL L K +V + G + S P Sbjct: 640 ITVTDTGIGIKPEDQSKLFKPFSQVDSFLSKQFQGTGLGLSLVKQIVQLHGGDIWFRSKP 699 Query: 799 AKGTLIEIIFPL 810 +G+ + P+ Sbjct: 700 GEGSTFAFVIPI 711 >gi|83309724|ref|YP_419988.1| PAS/PAC domain-containing protein [Magnetospirillum magneticum AMB-1] gi|82944565|dbj|BAE49429.1| PAS/PAC domain [Magnetospirillum magneticum AMB-1] Length = 844 Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 79/259 (30%), Positives = 142/259 (54%), Gaps = 6/259 (2%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT D+++ + + L + KS+F+A VS E+R PLT +IGFSE++ + F Sbjct: 583 LTWLDVTDSARVERALRERNEALAAADLLKSEFIANVSAEVRKPLTTVIGFSEMLAAEYF 642 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L N R EYA I +G + +++D+LD++ IE+G+M L + V + +S + LV Sbjct: 643 GKL-NKRQHEYARGITEAGQGLQALISDILDLAAIEAGQMALELDTVDVHPMLSGVLGLV 701 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + EK++ + +I I+AD R ++Q+ N+L NA+ TPSGG++ + + Sbjct: 702 RERVREKKVTLDFDCPLDIGWIVADERRLRQVLFNLLGNALKRTPSGGKVSVRAERRPS- 760 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG----EGTGLGLPLAKAMVDANMGK 791 E+ L + DTG G+++ + E+ F + + + +G+GL L + VD + G+ Sbjct: 761 ELALTISDTGTGLSDEQRERLFGGFATGGRREALPAGRADDDSGIGLALVQRFVDLHGGR 820 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + S P +GT++ + P+ Sbjct: 821 VELASAPGEGTVVTVRLPV 839 >gi|114566147|ref|YP_753301.1| signal transduction histidine kinase-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337082|gb|ABI67930.1| multi-sensor hybrid histidine kinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 1442 Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 84/254 (33%), Positives = 139/254 (54%), Gaps = 8/254 (3%) Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 +S ++ + E Q + KL+ AK+IAE + KS FLA +SHEIRTP+ I+GF E++ Sbjct: 787 AFSNSIAEAIERSQMEQKLAQAKEIAESANYAKSLFLANMSHEIRTPMNGILGFLELLGE 846 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + +Y R+ ++L ++ND+LD SKIE+GK+ + P + V +A+ Sbjct: 847 TEL----STEQQDYVQEAHRASEILLYLINDILDFSKIEAGKLAMEEIPFRVRTVVEDAV 902 Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT- 730 SL A EK + + T +N+P ++ D ++QI N+LSNA+ FT +G ++I T Sbjct: 903 SLQAPKAREKGLEMHTLIKSNVPDEVVGDPARLRQILNNLLSNAVKFTHTGEILVIVETI 962 Query: 731 --HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + E+ V D+G+G+ ++EK +PF Q S + GTGLGL ++ +V Sbjct: 963 NESSDKAEIAFEVSDSGIGIAPEDMEKLFQPFTQADASTTRKYGGTGLGLAISYELVRLM 1022 Query: 789 MGKFYIFSTPAKGT 802 G + S +G+ Sbjct: 1023 EGTMQVKSKLGQGS 1036 >gi|48256736|gb|AAT41590.1| GacS [Pseudomonas fluorescens] Length = 917 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 142/237 (59%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQLDYLGT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRT 688 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ Sbjct: 326 IEKSADSLLGIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTG 745 + + ++ D +KQI N++SNAI FT G + ++ H + ++ + ++DTG Sbjct: 386 VYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEDEHEDSVQLRISIQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++N ++ + F Q NS + GTGLGL ++K +V+ G+ + STP +G+ Sbjct: 446 IGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLVEQMGGEIGVDSTPGEGS 502 >gi|283852288|ref|ZP_06369560.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio sp. FW1012B] gi|283572370|gb|EFC20358.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio sp. FW1012B] Length = 735 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 83/254 (32%), Positives = 139/254 (54%), Gaps = 12/254 (4%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DIS+ K+ L AK+ AE+ S KSDF+A +SHEIRTP+ I+G + + + Sbjct: 463 VIQDISQRKELTAALCQAKETAERASRAKSDFMANMSHEIRTPMNGIMGMIHLARLK--S 520 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P +P +Y + D S +L IVND+LD++K+E+GK+ L EP +L + AI +Q Sbjct: 521 P--DPALAQYLDLADLSARHLLGIVNDVLDLAKMEAGKVRLLREPFALRREIRAAIEPMQ 578 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHT 732 A EK + + + A ++P + D ++Q+ N++ NA+ FT +G ++ + Sbjct: 579 AAAGEKGLALALAVAPDVPDAVTGDAGRLRQVLANVVGNAVKFTGTGHVDIRVELDDDAA 638 Query: 733 SNEEVILR----VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 +E V+ R VRDTG+G+ L+ + F Q S + G GLGLP+++ +V+ Sbjct: 639 GDEAVVRRLRFTVRDTGIGIPADRLDDIFESFEQAHTSAHVLYGGAGLGLPISRRLVEFM 698 Query: 789 MGKFYIFSTPAKGT 802 G + S +G+ Sbjct: 699 GGTIDVASREGEGS 712 >gi|320104503|ref|YP_004180094.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] gi|319751785|gb|ADV63545.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] Length = 867 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 86/266 (32%), Positives = 147/266 (55%), Gaps = 21/266 (7%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+++ ++ + +L A++ AE+ + K+ FLA HEIRTPLTAI+GF+EV+ ++R G Sbjct: 283 DLTDLRRAQAELEQARRTAEQANQAKTAFLAHFGHEIRTPLTAILGFTEVL-HERLG--H 339 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD--EAVSEAISLVQL 677 +P+ E I +G+ + ++ND LD+SKIESGK+ L P S+D E E ++ Q Sbjct: 340 DPQSAEALEAIQSAGSHLKMLLNDFLDLSKIESGKLEL--APTSIDPWELAVEVATINQG 397 Query: 678 YANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---- 732 A K I + + P ++ D ++Q+ N++ NAI F+ GG + IS + Sbjct: 398 QAQAKGIRLGVEANASTPLLVHVDTTRLRQVLFNLVGNAIKFS-QGGDVTISLIGSEPNA 456 Query: 733 ------SNEEVILRVRDTGVGMTNYELEKAMKPFGQI--PNSQQIRGEGTGLGLPLAKAM 784 ++ +VRD G GMT ++ + +PF Q+ N + G+GLGL ++K++ Sbjct: 457 SDSDTDGRSTLVWQVRDQGPGMTADQVARLFEPFHQVGTANPRDTLSSGSGLGLVISKSL 516 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810 V+ G + S P +GT ++ P+ Sbjct: 517 VELMGGTIQVVSHPGRGTTVQFELPI 542 >gi|312114352|ref|YP_004011948.1| multi-sensor signal transduction histidine kinase [Rhodomicrobium vannielii ATCC 17100] gi|311219481|gb|ADP70849.1| multi-sensor signal transduction histidine kinase [Rhodomicrobium vannielii ATCC 17100] Length = 875 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 85/286 (29%), Positives = 150/286 (52%), Gaps = 8/286 (2%) Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 G+ + L ++ LP +T D+++ K+ + L + E K+ FL+ Sbjct: 578 GTVAKSDGAHLAYVVTPLPDGGTL-VTFADVTDRKRFEEVLLERNEALEASDRLKTAFLS 636 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 VS+E+RTPLT IIGF++++ FG L N + EY ++I S ++L+I+ND++D++ + Sbjct: 637 HVSYELRTPLTTIIGFTDMLAEPAFGALNNKQR-EYLDHIKTSSEVLLNIINDIIDLAAL 695 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710 ++G ++L PV ++ + A V+ + + + A+ ++AD + Q+ N Sbjct: 696 DAGALDLKLAPVEIESLIEAAELGVRERLSRANVNLDVHIASGAGTVMADANRLIQVLYN 755 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 +LSNAI F+P G I ++ N V + V+DTG+G+ E F S+ R Sbjct: 756 LLSNAIGFSPEDGTITLACRREKN-GVAISVQDTGLGIPEEEQATVFDRFES--RSKGSR 812 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 G GLGL L K++V+ + G+ + STP GT + + P +HP Sbjct: 813 HRGAGLGLTLVKSIVELHKGRIDLRSTPGAGTTVTVFLP---DNHP 855 >gi|294141952|ref|YP_003557930.1| sensor histidine kinase/response regulator [Shewanella violacea DSS12] gi|293328421|dbj|BAJ03152.1| sensor histidine kinase/response regulator [Shewanella violacea DSS12] Length = 931 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 93/252 (36%), Positives = 142/252 (56%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A + S KS+FLA +SHE+RTPL +IGF+ +++K PL + + +Y N Sbjct: 281 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKT----PLHSSQQ-DYVN 335 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S +L I+ND+LD SK+E+GKM L P +L E + + I+L+ A EK I + Sbjct: 336 TIEKSATNLLGIINDILDFSKLEAGKMVLENMPFALRETLDDTITLLSNSAREKDIELVV 395 Query: 689 SFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDT 744 +IP L+ D QI N++ NAI FT G + + T ++N++V LR V DT Sbjct: 396 DIDQSIPEDLSGDAMRFSQIITNLVGNAIKFTDIGSVHLRLQLTESTNDKVNLRCEVIDT 455 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + E + FGQ +S R GTGLGL + K +++ G+ S P G+ Sbjct: 456 GIGIDESQQELLFQAFGQADSSISRRFGGTGLGLIITKRLINRMGGQIGCHSKPNTGSSF 515 Query: 805 EIIFPLYDTSHP 816 PL + +P Sbjct: 516 WFTLPLSTSIYP 527 >gi|262165591|ref|ZP_06033328.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223] gi|262025307|gb|EEY43975.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223] Length = 1325 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 107/376 (28%), Positives = 184/376 (48%), Gaps = 20/376 (5%) Query: 441 RINKRKMEIEVMQLCS-ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 R+ +RK+ +E QL IL+AT + + ++ G L+ N +L G D++ KP Sbjct: 461 RLAERKV-LEQSQLNQEILDATPNPMYCLSANGTFLTVNAKFLELMGLYNNDVIGKP--- 516 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQT------LEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 ++ PS + + + +Q + I + E L+ + + Sbjct: 517 -PQEIFPSSVAERFAQAHQILTQQQSSQNYEISLIDYAGVQREMLVYEASFSDRADKVNG 575 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + D++E K+ + +L AK A+ S K DFLA +SHEIRTP+ AI+G + + N Sbjct: 576 IVGILLDMTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT 635 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + + +Y I+ S +L I+ND+LD SKIE+GK+++ SLD+ + + Sbjct: 636 QL----DATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLDVERIDFSLDDVLDNVTA 691 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 ++ L A EK I +IP ++ D + Q+ +N+ NA+ FT G +I + Sbjct: 692 VISLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISARVRQ 751 Query: 733 SNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 NE+ ++ V+DTG+G+ +L F Q NS + GTGLGL ++K +V+ Sbjct: 752 LNEQQVMLLFAVKDTGIGIAQEKLSDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMG 811 Query: 790 GKFYIFSTPAKGTLIE 805 G+ + S KG+ E Sbjct: 812 GQISVHSEEGKGSTFE 827 >gi|268325504|emb|CBH39092.1| putative histidine kinase [uncultured archaeon] Length = 476 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/219 (36%), Positives = 126/219 (57%), Gaps = 6/219 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA-NYIDRSGNLVLDIVND 643 KSDF++ VSHE++TPLTA+ ++V++ ++ IDR NLV ND Sbjct: 252 KSDFVSMVSHELKTPLTAMRTSAQVLEAAGIATETKREMLDIILRNIDRQTNLV----ND 307 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 LLD+S+IESG+M L FE VSLD ++++I V+ A+EK I + + + D Sbjct: 308 LLDLSRIESGRMKLKFESVSLDSLIADSIESVKHAASEKGIKLNVKLPEGLSSVKGDREK 367 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 + Q+ +N+L+NAI FTP G+I I N +V ++V DTG+G+ +LEK F Q+ Sbjct: 368 LTQVVINLLNNAIKFTPRSGEISIKAIEL-NGQVEVKVSDTGIGIPPEDLEKVFDKFYQV 426 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 ++ GTGLGL + K +++A+ G + S KG+ Sbjct: 427 DSTLTREAGGTGLGLAICKGIIEAHNGHIWAESELGKGS 465 >gi|254443535|ref|ZP_05057011.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198257843|gb|EDY82151.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 1302 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 105/362 (29%), Positives = 186/362 (51%), Gaps = 31/362 (8%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 ++EA +D I ++ +G S N + G+ ++I K V+ ++N ++ Sbjct: 794 LIEAATDFIFTLDLQGNFTSFNSTCESITGFSRDEI--KTMLVY------DLLNKADAKL 845 Query: 517 LSLDLRQTLEKITLGSTKEEKL----------LSLRIIIKKLPFSSCYSLTMHDISEWKQ 566 L L + K S + E + SLR + + + + + M DI+ K+ Sbjct: 846 ARLALTRRKTKAETKSLQSEIIRKDGSKLWVETSLRFLRTEGKVTGMFCI-MRDITLRKK 904 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 +L+ A+ AE + KS FLA +SHE+RTP+ +I + ++ + + +Y Sbjct: 905 VHQELTRARDAAESNTKAKSAFLATMSHELRTPMNGVISMANILLDTDL----DETQRDY 960 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD--EAVSEAISLVQLYANEKRI 684 + I SG +L ++ND+LD+SK E+GK+++ EP LD E +++++SL+ A +K I Sbjct: 961 TSTIRDSGESLLTLLNDILDLSKAEAGKLSI--EPFELDLKELLNQSVSLLSTTAQQKNI 1018 Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR-- 740 + T+ ++ P +L D +KQ+ LN+ NAI FT G +I +S +N+ V +R Sbjct: 1019 QLETNVTDDTPTLLIGDAGRIKQVILNLTGNAIKFTEDGHVKINVSKLEDTNKHVNIRIE 1078 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 + DTGVG++ + +PF Q S R GTGLGL ++K +V+ G+ + S K Sbjct: 1079 IEDTGVGISETAASRLFRPFEQADGSHSRRFGGTGLGLAISKEIVELMDGEIGVDSVLGK 1138 Query: 801 GT 802 G+ Sbjct: 1139 GS 1140 >gi|298491734|ref|YP_003721911.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] gi|298233652|gb|ADI64788.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] Length = 1002 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 89/265 (33%), Positives = 145/265 (54%), Gaps = 9/265 (3%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSH---AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 F SC + H SE + +N L A + AE + K +FLA +SHE+RTPL I+G+ Sbjct: 589 FGSCTDIDDHKRSE-EALRNALQEKQAAYEAAETANRVKDEFLAILSHELRTPLNPILGW 647 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 S+++K G L + E I+R+ L +D+++DLLD+S+I GK+ L+ V+L + Sbjct: 648 SQLLKT---GKLDKDKTDEALKSIERNAKLQVDLIDDLLDVSRILRGKLTLNVTTVNLAD 704 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 +S A+ + L A+ K+I ++T NI ++ D ++QI N+LSNAI FTP GG+++ Sbjct: 705 IISAALETMSLAASVKQIAVQTLIEPNIGKVRGDPARLQQIVWNLLSNAIKFTPQGGEVV 764 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + + I+ V D G G+ L + F Q S + G GLGL + + +V+ Sbjct: 765 VQLEQIGSMAHII-VSDQGKGINRKFLPHIFEHFRQEDGSTTRKFGGLGLGLAIVRHLVE 823 Query: 787 ANMGKFYIFS-TPAKGTLIEIIFPL 810 + G S +GT +++I PL Sbjct: 824 LHGGTVEADSPGEGQGTTLKVILPL 848 >gi|220919555|ref|YP_002494859.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] gi|219957409|gb|ACL67793.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1] Length = 461 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/254 (31%), Positives = 135/254 (53%), Gaps = 2/254 (0%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + + KL + ++ KS+FLA +SHE+RTPLT++IG+SE++ GPL + Sbjct: 197 ELQDKNQKLEDSYAKLKELDRLKSNFLATMSHELRTPLTSVIGYSEMMLEGLGGPLTAEQ 256 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 EY I G +L ++ +LDISKIE+G++ L V + + +A++ + A +K Sbjct: 257 R-EYLGIIMEKGENLLQLITSILDISKIEAGRVRLVLSEVDAVQLMRDAVATLLPIARKK 315 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + + +PRI AD ++Q +N+ SNA+ FTP GG I +S E + + V Sbjct: 316 GLKVSCD-TTPLPRIHADRDKLRQCLVNLCSNAVKFTPPGGSITVSAEVLPAERLAIHVV 374 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D+G+G+ L K F Q+ S G GLGL + K+ V+A+ G+ + S G+ Sbjct: 375 DSGIGIPEEHLGKVFDVFYQVDGSSTREYGGAGLGLAIVKSFVEAHGGEIRVRSAAGTGS 434 Query: 803 LIEIIFPLYDTSHP 816 + ++ P+ P Sbjct: 435 VFTVLLPIRAAPAP 448 >gi|120597632|ref|YP_962206.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1] gi|120557725|gb|ABM23652.1| PAS/PAC sensor hybrid histidine kinase [Shewanella sp. W3-18-1] Length = 1771 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 85/251 (33%), Positives = 139/251 (55%), Gaps = 8/251 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 ++M D++E K ++L AK+ A+ S K DFLA +SHEIRTP+ AIIG S++ Sbjct: 1011 VSMVDMTELKLLSDELLIAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTAL 1070 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + + Y I+R+ +L I+ND+LD SKIE+GK+++ P LD + + + Sbjct: 1071 ----DKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLSDMF 1126 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTS 733 K++ + + A N+PR + D + Q+ +N+++NAI FT G ++ I+ Sbjct: 1127 SEKVVHKQLELLFAVAPNVPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLLSINLVEQQ 1186 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 N++V LR VRD+G+G+T+ + K K F Q S + GTGLGL + K +V+ G Sbjct: 1187 NDDVTLRFSVRDSGIGLTDEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGN 1246 Query: 792 FYIFSTPAKGT 802 + S G+ Sbjct: 1247 IGVESQFGHGS 1257 >gi|91787248|ref|YP_548200.1| periplasmic sensor hybrid histidine kinase [Polaromonas sp. JS666] gi|91696473|gb|ABE43302.1| periplasmic sensor hybrid histidine kinase [Polaromonas sp. JS666] Length = 1197 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 131/237 (55%), Gaps = 8/237 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 HA+ A++ + KS +++ +SHE+RTPL +I+G+++++ P P + + I R Sbjct: 720 HARHAADQANQAKSRYISAISHELRTPLNSILGYAQLMGEDAAIP---PHRKQAVSVIRR 776 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 G +L ++ LDI++IE+GK+ L +P+ + V E + +L A K + R A Sbjct: 777 GGEHLLSLIEGTLDIARIEAGKLTLTVKPMQFADCVHEMAGMFELQAAAKGLGFRFETAG 836 Query: 693 NIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 N+P ++ AD + V+QI +N+L NAI FT GQ+I H + E + + DTG GM+ Sbjct: 837 NLPELVRADEKRVRQILINLLGNAIKFTAQ-GQVIFRLRH-AREMAYIDIEDTGPGMSEA 894 Query: 752 ELEKAMKPF--GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 EL + +PF G G GLGL +AK + D G+ + STP +G++ + Sbjct: 895 ELAQIFEPFARGAAAGHSAEGTPGAGLGLTIAKMLTDLMGGEMTVLSTPGQGSVFRV 951 >gi|808104|gb|AAA82924.1| regulator of multiple functions [Pseudomonas tolaasii] Length = 909 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 82/239 (34%), Positives = 145/239 (60%), Gaps = 12/239 (5%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ +PR+++Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----SPRHVDYLGT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRT 688 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ Sbjct: 326 IEKSADNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSL 385 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILR--VRD 743 + + ++ D +KQI N++SNAI FT G I++ +EE V LR V+D Sbjct: 386 VYRDTPLAVVGDPLRLKQILTNLISNAIKFTREG--TIVARAMVEDEEEDSVQLRISVQD 443 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TG+G++N ++ + F + NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 444 TGIGLSNQDVRALFQAFTEADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|6273355|gb|AAF06332.1|AF192795_1 two component histidine sensor kinase GacS [Pseudomonas chlororaphis] gi|88604817|gb|ABD46754.1| two-component histidine kinase [Pseudomonas chlororaphis] Length = 917 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 142/237 (59%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQLDYLGT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRT 688 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ Sbjct: 326 IEKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTG 745 + + ++ D +KQI N++SNAI FT G + ++ H + ++ + ++DTG Sbjct: 386 VYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISIQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++N ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 446 IGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|209517665|ref|ZP_03266502.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. H160] gi|209501840|gb|EEA01859.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. H160] Length = 789 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 139/245 (56%), Gaps = 6/245 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ +L+ AK+ A+ + KSDFLA +SHE+RTPL AI+G+++++K + R I Sbjct: 306 RERTAELAVAKEHADAANQAKSDFLAHMSHELRTPLNAILGYAQILK---LDTTLDQRQI 362 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 I RSG +L ++ND+LDI+KIE+G+M L+ VSL++ V +++ A EK + Sbjct: 363 NGLTVIQRSGEHLLMLINDILDIAKIEAGRMELNLSDVSLEQLVHFIAESIRVKATEKGL 422 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 ++P + D ++Q LN+LSNAI FT G + +S T + V+D Sbjct: 423 AFACEMPPDLPAGVRVDEIRLRQALLNLLSNAIRFTEQ-GSVRLSVAFTPPTRLCFEVQD 481 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ LE+ +PF Q+ + + R GTGLGL +++ +V G+ ++ S G+ Sbjct: 482 TGIGIDEGRLEEIFRPFEQVSDERH-RFGGTGLGLAISRQLVRLMGGEIHVESRRDIGST 540 Query: 804 IEIIF 808 I+ Sbjct: 541 FSIVL 545 >gi|262275440|ref|ZP_06053250.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP 101886] gi|262220685|gb|EEY72000.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP 101886] Length = 1306 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 91/254 (35%), Positives = 140/254 (55%), Gaps = 14/254 (5%) Query: 562 SEWKQEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ++ QE N+ L AK+ AE+ + KS+FLA +SHEIRTP+ IIG SEV+ + Sbjct: 622 AQLNQEVNEALRRAKEDAEQANDAKSNFLAMMSHEIRTPINGIIGMSEVLSHTELAF--- 678 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 Y + I S N +LDI+ND+LD+SKIE+GKM + E + E V ++V Sbjct: 679 -EQRRYNDTITTSANALLDIINDVLDLSKIEAGKMTVRHETFCIHELVENVTNIVA--PR 735 Query: 681 EKRILIRTSFANNI--PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---- 734 K + T++ + + +I +D ++QI +N+ NA FT SG + +S T S Sbjct: 736 VKSNVTFTTYTDPLLPHQITSDFSKLRQILVNLAGNAAKFTDSG-YVDVSITQVSRIENR 794 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E+ L+V DTG+G+ +L+KA + F QI NS + R +GTGLGLP+ + + G Sbjct: 795 CEIALKVTDTGIGIEKAQLDKAFENFSQIDNSSKRRYQGTGLGLPICRKFTELLNGDIKA 854 Query: 795 FSTPAKGTLIEIIF 808 S+ +G+ F Sbjct: 855 ESSIGQGSTFSARF 868 >gi|254679644|gb|ACT78509.1| GacS [Pseudomonas sp. DF41] Length = 916 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 142/237 (59%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQLDYLGT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRT 688 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ Sbjct: 326 IEKSADSLLGIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTG 745 + + ++ D +KQI N++SNAI FT G + ++ H + ++ + ++DTG Sbjct: 386 VYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEDEHEDSVQLRISIQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++N ++ + F Q NS + GTGLGL ++K +V+ G+ + STP +G+ Sbjct: 446 IGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLVEQMGGEIGVDSTPGEGS 502 >gi|121998929|ref|YP_001003716.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1] gi|121590334|gb|ABM62914.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1] Length = 1643 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 91/265 (34%), Positives = 139/265 (52%), Gaps = 19/265 (7%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E KQ A++ AE+ S KS+FLA +SHEIRTPL A+IG S+++ Sbjct: 910 DLTEIKQ-------AQEQAEQASRAKSEFLANMSHEIRTPLNAVIGLSQLLLETSL---- 958 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + R ++ N + S ++L I+ND+LD SKIESG++ L L E V +L Sbjct: 959 DKRQQDHLNKVLSSSRMLLGIINDILDFSKIESGQLELDTHTFDLHEVVDHLAALFGEVG 1018 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS---NE 735 + K++ + S IP +L D + Q+ N+LSNA FTP GG++ + + Sbjct: 1019 HRKQLELVYSLPPQIPCVLVGDSLRITQVLTNLLSNATKFTPEGGEVEMGIQLVEPPKAD 1078 Query: 736 EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 V LR VRDTG+GM+ +L + + F Q S R G+GLGL +++ +V+ G Sbjct: 1079 SVTLRFFVRDTGIGMSEEQLGRLFRAFTQADTSTTRRYGGSGLGLVISRRLVERMGGALE 1138 Query: 794 IFSTPAKGT--LIEIIFPLYDTSHP 816 S P +G+ E+ PL P Sbjct: 1139 ATSKPGQGSTFAFELTLPLGTPQAP 1163 >gi|20090805|ref|NP_616880.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19915870|gb|AAM05360.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 499 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 114/387 (29%), Positives = 179/387 (46%), Gaps = 20/387 (5%) Query: 436 EDVDTRINKRK-----MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 E + + KRK + E L +L + D + + EG L N + P E Sbjct: 94 EKLKAEVEKRKEMQEKLSRERSMLSGLLNSIPDAVFFKDPEGTYLGCNPVFCEFVKRPTE 153 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP- 549 ++ K F + S +N EI E+ + LL K P Sbjct: 154 GVVGKKNPDFYSKEVASFLNAEDKEIFETGKAIIRERWATRPDGRKVLLQ----TVKAPL 209 Query: 550 ------FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 F ++ DI+E ++ ++ L + IAE S KS+F+A VSHE++TPL +I Sbjct: 210 YDETGNFIGLVGVS-RDITERQRAEDALLKVR-IAEDASQAKSEFIATVSHELKTPLNSI 267 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 IGFS+++ G L + R Y N I SG +L ++D+LD+SKIE+GK L E Sbjct: 268 IGFSDLLLEDSSGKL-SERQARYINNISISGKHLLQFIDDILDLSKIEAGKTFLEPENFE 326 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 + + + + + K++ + + I AD KQI N++SNA+ FTP G Sbjct: 327 FTKIFKDIEKVFRPRVSGKKLSLNFEVDSGIKSFYADKMMFKQILYNLISNAVKFTPEEG 386 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 I +S N V + V+DTG+G++ +++ +PF Q + + R E TGLGL L K Sbjct: 387 SITVSAAKIGN-MVRICVKDTGIGISREDMDSFFQPFKQPDSFFKRRYERTGLGLFLVKR 445 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL 810 V+ + G S P +G+ I PL Sbjct: 446 FVEMHGGNIQAESVPGEGSSFIIELPL 472 >gi|329896809|ref|ZP_08271725.1| two-component system sensory histidine kinase [gamma proteobacterium IMCC3088] gi|328921564|gb|EGG28944.1| two-component system sensory histidine kinase [gamma proteobacterium IMCC3088] Length = 508 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 90/257 (35%), Positives = 138/257 (53%), Gaps = 10/257 (3%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ--RFGPLGNPRYIEY 626 ++ AK+ A+ ++ KS FLA VSHE+RTPL AIIG+SE+I+ + + + E Sbjct: 256 GEVQMAKEQADSANAAKSTFLANVSHELRTPLNAIIGYSEMIQEEVNDGEAINKDQLQED 315 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAIS-LVQLYANEK 682 I SG +L ++ND+LD++KIE+GKM +H F+P++ V+++++ L+ NE Sbjct: 316 LTKIVFSGRQLLTLINDVLDLAKIETGKMTIHPESFDPIATLHTVADSMAPLLNTQGNEM 375 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 I+ +P I D +QI N+LSNA FT +G I + S E++ + VR Sbjct: 376 CWDIQ----GPLPCIHTDATKFRQIVTNLLSNANKFTEAGSITIRAGITDSQEQIWIEVR 431 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+GMT+ +L + + F Q S R GTGLGL L + G STP G+ Sbjct: 432 DTGIGMTDQQLGRIFEAFEQAERSTSSRYGGTGLGLSLCQEFAHMLGGDITASSTPNVGS 491 Query: 803 LIEIIFPLYDTSHPHDC 819 + P+ P D Sbjct: 492 SFIVTLPVNLELDPEDA 508 >gi|308270675|emb|CBX27286.1| hypothetical protein N47_I07060 [uncultured Desulfobacterium sp.] Length = 701 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/240 (35%), Positives = 131/240 (54%), Gaps = 3/240 (1%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK+ AE K FLA +SHE+RTPL +IIGF+ ++ + GPL N + Sbjct: 458 ELVIAKERAESADRIKPAFLATMSHELRTPLNSIIGFTGIMLQELAGPL-NEEQRKQLTM 516 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + S +L ++ND+LDISKIE+G++ L L ++ + + LV A +K + +R Sbjct: 517 VQSSSRHLLSLINDVLDISKIEAGQLELSVTSFELRPSIEKMVKLVLPMAKKKGLDLRVY 576 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 A++I D R ++Q+ LN+L+NA+ FT G + + N++ +L V DTG G+ Sbjct: 577 IADDINTAATDQRRLEQVVLNLLNNAVKFTEKG--YVHISCRIENDKYLLSVSDTGTGIR 634 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 EL +PF QI + EGTGLGL + K ++D G + S KG+ + FP Sbjct: 635 PEELSGLFQPFHQIDTGLTRKYEGTGLGLSICKRLLDMMGGTIDVQSQWGKGSTFIVRFP 694 >gi|21702685|gb|AAM76053.1| two-component sensor kinase [Pseudomonas chlororaphis] Length = 917 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 142/237 (59%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQLDYLGT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRT 688 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ Sbjct: 326 IEKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTG 745 + + ++ D +KQI N++SNAI FT G + ++ H + ++ + ++DTG Sbjct: 386 VYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISIQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++N ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 446 IGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|146291410|ref|YP_001181834.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32] gi|145563100|gb|ABP74035.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32] Length = 1196 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 86/257 (33%), Positives = 148/257 (57%), Gaps = 10/257 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S+ + +L AK++A+ S K+ FLA +SHEIRTP+ AIIG E+ + Sbjct: 682 DVSDRVKLMAQLREAKELADSASKAKTQFLATMSHEIRTPMNAIIGLLELAIKRSHENQF 741 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + I A+ S +L ++ D+LDI KIE+G++ L+ + L + +S I + + A Sbjct: 742 DFNSIRVAH---DSAKGLLALIGDILDIVKIEAGELTLNPTKIDLKQTISSTIQIFEGIA 798 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--SNEE 736 EK++ ++ F + +P+ +L D +KQI N++SNAI FT + G + +S NE+ Sbjct: 799 LEKKLPLKLIFDHKLPQYVLLDPLRLKQILSNLISNAIKFT-NQGMVTVSAEQQLELNEQ 857 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 ++L+V DTG+G++ + +K +PF Q+ + +G GTGLGL + ++ D G+ + Sbjct: 858 MYLLLKVSDTGIGISKDDQQKLFRPFAQVQHGADNKG-GTGLGLAICSSLCDMMGGELRM 916 Query: 795 FSTPAKGTLIEIIFPLY 811 S P +GT + + PLY Sbjct: 917 ISEPEQGTTLSMRLPLY 933 >gi|258592021|emb|CBE68326.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 528 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 92/277 (33%), Positives = 146/277 (52%), Gaps = 26/277 (9%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ +L AK+ AE+ S HKS FL+ +SHE+RTPL +IIGF+ ++++ L + + Sbjct: 249 EERTRQLLEAKQQAEEASRHKSLFLSNMSHELRTPLNSIIGFASLLQDPIVSSLPE-KEL 307 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + +I SG +L ++NDLLDISK+E+GK+ L + L EA+ A+ + A +K+ Sbjct: 308 QLMRHISTSGEHLLALINDLLDISKVEAGKLILQPQAFPLGEAIEAAVYTFRPQAAQKQQ 367 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST--------------- 729 + S +++P I AD KQI N+LSNA+ FTP GG+I ++ Sbjct: 368 DLGLSMDHDMPIIKADPIRFKQILYNLLSNAVKFTPVGGRIKVAARIAPGVGHQKAGSND 427 Query: 730 ---------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 T E V + V DTG+G+ +L K + F Q+ + + +GTGLGL L Sbjct: 428 VDPLHPIPCTQYPGECVEIAVSDTGIGIRCEDLSKLFQLFTQLEPTLTKQFQGTGLGLAL 487 Query: 781 AKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTSHP 816 K +V+ + G S P +G+ + PL P Sbjct: 488 TKQLVELHGGTIGAASEGPGRGSTFTVRLPLPSPERP 524 >gi|117926671|ref|YP_867288.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610427|gb|ABK45882.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 927 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 115/386 (29%), Positives = 188/386 (48%), Gaps = 18/386 (4%) Query: 442 INKRKMEIEVMQLCS-ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTV 499 I R + E ++L S +E I I + EG I N K+ GY E+++ KP + Sbjct: 263 ITDRVHQEERLRLLSRAVEYGPASIVITDAEGHIQYVNPKFEKITGYGAEEVIGNKPSLL 322 Query: 500 FLEQNTPSVMNHYLTEI-LSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 Q P++ + I + R + + K GS E ++ K + + Sbjct: 323 KSGQTEPAIYDALWDSISRGHEWRGELINKRKDGSLYWEMAHISPVLSKTSGKITHFVGI 382 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 DI+ K+ + L +K AE S KS+FLA +SHEIRTP+ AI+G +E++ + Sbjct: 383 KEDITSLKETEAHLELTQKKAEAASLAKSEFLATMSHEIRTPMNAILGMTELLGETQLS- 441 Query: 618 LGNPRYIEYANYID---RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 IE ++ +G +L I+ND+LDISK+ESG + L P +L V +A + Sbjct: 442 ------IEQRGFLSVCRSAGENLLQIINDILDISKVESGGLELQHVPFNLRRIVYDAGEV 495 Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTT-- 730 ++ ++EK + ++P +L D ++QI +N L NAI FT +G ++STT Sbjct: 496 IRFRSHEKGLHQLIFIDESVPEWLLGDPARIRQILINFLGNAIKFTEAGTIATVVSTTAG 555 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 S E++ RV DTG+G+ + F Q+ +S Q R GTGLGL ++K + D G Sbjct: 556 KGSQVEIVFRVIDTGIGIPESKQSVVFDAFKQLDSSTQRRYGGTGLGLTISKKLADLMGG 615 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHP 816 + + S G+ + L ++ P Sbjct: 616 QLGLKSQEGHGSTFTLSLRLSRSTGP 641 >gi|167629693|ref|YP_001680192.1| sensor histidine kinase, putative [Heliobacterium modesticaldum Ice1] gi|167592433|gb|ABZ84181.1| sensor histidine kinase, putative [Heliobacterium modesticaldum Ice1] Length = 940 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 93/261 (35%), Positives = 142/261 (54%), Gaps = 16/261 (6%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DI+E KQ +L AK AE+ S KS FLA +SHEIRTP+ IIG +E++ R Sbjct: 520 LMDITEKKQVDMELRIAKVRAEEASLAKSSFLAMMSHEIRTPMNGIIGMNELLLGTRL-- 577 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISL 674 ++YA + S L+L ++ND+LD SK+E+GKM L F+PV + + V+ L Sbjct: 578 --TSEQLDYAQAVQESAELLLTVINDILDYSKVEAGKMELESIDFDPVPVVDGVAR---L 632 Query: 675 VQLYANEKRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH 731 +Q A EK + I T A+ R L D ++Q+ LN++SNA+ FT G I + Sbjct: 633 LQGKAREKGLTISTFIADE-ARFLFQGDPGRLRQVLLNLVSNAVKFTERGTIDIRVFPVS 691 Query: 732 TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + +V +R V DTG+G+ + +PF Q S + GTGLGL +++ +V+ Sbjct: 692 DTGSQVTIRFEVIDTGIGIAPEIRDCLFQPFSQGNTSMTRKYGGTGLGLAISRNLVELMG 751 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 GK + S P +G+ P+ Sbjct: 752 GKIGVQSKPGEGSTFWFTLPV 772 >gi|46200979|ref|ZP_00055969.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 1666 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 108/358 (30%), Positives = 183/358 (51%), Gaps = 22/358 (6%) Query: 456 SILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFL--EQNTPSVMNHY 512 +I EA + GIA + NR +I+ N + +LFGY +++ + ++ +++ V + Y Sbjct: 825 AIFEAATVGIAFLKNR--VIVRGNPQLDRLFGYEPGELVGQSTRIWFPDDESFADVGDAY 882 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRI---IIKKLPFSSCYSLTMHDISEWKQEKN 569 E LS E+ + K+ RI I S + D+++ + Sbjct: 883 --EALSRGEVHQREQCYV--RKDGTRFWCRISGSAIDPSDLSRGAVWMLEDVTDARAAAE 938 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 L+ A+ +AE + KSDFLA +SHEIRTP+ AIIG S + NPR +Y Sbjct: 939 ALAKARDVAEDAAKTKSDFLANMSHEIRTPMNAIIGMSHLALKTEL----NPRQRDYVKK 994 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I +SG +L I+ND+LD SKIE+GK+ + V LD+ + +L+ A+ K + + Sbjct: 995 IQQSGQHLLGIINDILDFSKIEAGKLEVEVTEVHLDKVLENVGNLISDKASAKGLELLFD 1054 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--EEVILR--VRDT 744 +P ++ D + Q+ +N +NA+ FT G+I+++ + EV+LR VRDT Sbjct: 1055 LGAGVPLDLMGDSLRLGQVLINYANNAVKFTEE-GEIVVAVRLLEDLGAEVMLRFEVRDT 1113 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G+T + + + F Q S + GTGLGL ++K + + G+ + S P +G+ Sbjct: 1114 GIGLTEEQKARLFQSFQQADTSTTRKFGGTGLGLAISKKLAELMGGEVGVDSVPGEGS 1171 >gi|255034653|ref|YP_003085274.1| ATP-binding region ATPase domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254947409|gb|ACT92109.1| ATP-binding region ATPase domain protein [Dyadobacter fermentans DSM 18053] Length = 1871 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 85/263 (32%), Positives = 147/263 (55%), Gaps = 10/263 (3%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E + +K ++ K++ E++S K F A +SHEIRTP+TAI+G SE+I + PL N Sbjct: 1465 AEIQVQKEEIERQKQLVEQKSRFKEQFFANMSHEIRTPMTAILGMSELIFDT---PL-NE 1520 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + +EYA I S +L I+ND+LD SKIE+GK + +P + + + ++++ A E Sbjct: 1521 KQLEYARGIRYSSENLLAIINDVLDYSKIEAGKFSFINKPFQVGDRMERLGYILRVIAEE 1580 Query: 682 KRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEV 737 K + +R + +++ P+++ D + QI LN+ NA+ FT +G + + + E++ Sbjct: 1581 KGLELRITVDSDVSPQVIGDPIRLHQILLNLAGNAVKFTENGSVSIHVAVLSRDAGQEQL 1640 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V DTG+G+ +LE + F +I + R GTGLGL +A+ +V+ G+ + S Sbjct: 1641 QFSVADTGIGIAEDKLEYIFETFTRIDDDSNSRQSGTGLGLFIARKLVEEQGGRMQVTSR 1700 Query: 798 PAKGT--LIEIIFPLYDTSHPHD 818 GT ++ F + T HD Sbjct: 1701 VGHGTEFRFDLTFEICSTLEDHD 1723 >gi|939724|gb|AAA87840.1| putative sensor kinase; regulatory protein for production of antifungal antibiotics [Pseudomonas fluorescens Pf-5] Length = 917 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 142/237 (59%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQLDYLGT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRT 688 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ Sbjct: 326 IEKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTG 745 + + ++ D +KQI N++SNAI FT G + ++ H + ++ + ++DTG Sbjct: 386 VYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISIQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++N ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 446 IGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|296534470|ref|ZP_06896898.1| sensor histidine kinase [Roseomonas cervicalis ATCC 49957] gi|296265204|gb|EFH11401.1| sensor histidine kinase [Roseomonas cervicalis ATCC 49957] Length = 467 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 137/241 (56%), Gaps = 6/241 (2%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ + KS FLAR+SHE+RTPL ++G ++++ ++ P P E I+ +G +L Sbjct: 230 EQANEAKSRFLARMSHELRTPLNGVLGLAQLLAARQDVP---PAVREQLAMIEGAGRHLL 286 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRI 697 +VND+LD++++E+G++ L P++L + EA++LV+ A KR+ + A + P + Sbjct: 287 ALVNDVLDLAQVEAGRLGLQCAPLALQPLLQEALALVRPEAERKRLALALEAAPGLPPAV 346 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D R ++QI LN+L NA+ FTP+GG++ ++ + + + L V D G G+ + + Sbjct: 347 HGDARRIRQILLNLLGNAVKFTPAGGRVTLAASPLPGQGLRLEVVDNGPGIPPGQAARLF 406 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-AKGTLIEIIFPLYDTSHP 816 + F ++ + R EG+GLGL + + A G+ + + P +G+ + PL + P Sbjct: 407 RDFQRLEGGAE-REEGSGLGLAICAGLALAMQGRIGVEAGPDGRGSRFWVELPLPPAALP 465 Query: 817 H 817 Sbjct: 466 Q 466 >gi|14906039|gb|AAK72489.1| GacS [Pseudomonas chlororaphis subsp. aureofaciens] Length = 917 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 142/237 (59%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQLDYLGT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRT 688 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ Sbjct: 326 IEKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTG 745 + + ++ D +KQI N++SNAI FT G + ++ H + ++ + ++DTG Sbjct: 386 VYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISIQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++N ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 446 IGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|146294229|ref|YP_001184653.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32] gi|145565919|gb|ABP76854.1| PAS/PAC sensor hybrid histidine kinase [Shewanella putrefaciens CN-32] Length = 1771 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 85/251 (33%), Positives = 139/251 (55%), Gaps = 8/251 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 ++M D++E K ++L AK+ A+ S K DFLA +SHEIRTP+ AIIG S++ Sbjct: 1011 VSMVDMTELKLLSDELLIAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTAL 1070 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + + Y I+R+ +L I+ND+LD SKIE+GK+++ P LD + + + Sbjct: 1071 ----DKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLSDMF 1126 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTS 733 K++ + + A N+PR + D + Q+ +N+++NAI FT G ++ I+ Sbjct: 1127 SEKVVHKQLELLFAVAPNVPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLLSINLVEQQ 1186 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 N++V LR VRD+G+G+T+ + K K F Q S + GTGLGL + K +V+ G Sbjct: 1187 NDDVTLRFSVRDSGIGLTDEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGN 1246 Query: 792 FYIFSTPAKGT 802 + S G+ Sbjct: 1247 IGVESQFGHGS 1257 >gi|117925672|ref|YP_866289.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609428|gb|ABK44883.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1177 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 126/506 (24%), Positives = 225/506 (44%), Gaps = 43/506 (8%) Query: 329 CPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 P+ F H G Y N T ++S+ LS+ D D+ +P + Sbjct: 540 SPVGIFQTDHDGEYIYVN------TTWESITGTTSPQALSSQWDIHLHPDD---QPRVQQ 590 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK- 446 R T + +A ++ R + I + P+ + Q + T I +RK Sbjct: 591 RWQETVLHGNAFHEEYRFLRGDGTIRWVIGSAAPQRDPDRVIQGFV---GTLTDITERKQ 647 Query: 447 MEIEVMQ----LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 ME+E+ + L S++++ D I +G + NRA E ++P + Sbjct: 648 MELELGKERALLRSLIDSIPDLIFYKRADGTYMGCNRAF--------ELFCKRPEAALIG 699 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS----LRIIIKKLPFSSCYSLTM 558 ++ + L ++L + K + S + L + +I+K P + Sbjct: 700 HTDQALFSPELAQLLKSGDELVINKNSCFSHEATGLFGDGHQVPFLIQKSPMHGYQGELL 759 Query: 559 ------HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 DI++ + + +L AK+ AE + KS+FLA +SHEIRTP+ +IG E++ Sbjct: 760 GLIGVARDITQRLRVEQELQQAKEDAEAANRSKSEFLAAMSHEIRTPMNVVIGMGEILLE 819 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 PL N Y N + +G+ +L++++++LD+SKIE+G+M L LD V Sbjct: 820 T---PL-NAEQTRYINSMQHAGDALLELIDNILDLSKIEAGRMTLEERAFRLDTMVISIT 875 Query: 673 SLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 +L A + + A + + +L D V+Q+ N+L NA+ FT GG + + + Sbjct: 876 DFFRLQALNHNLSLVVEIAPELEQQYVLGDAGRVRQVLYNLLGNALKFTEEGG-VSLHLS 934 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 +N+ + RV DTG+G+ +LE+ F Q +S R GTGLGL + + + G Sbjct: 935 LDANQHIHTRVSDTGIGIAPQQLERIFDNFTQEDSSVTRRFGGTGLGLAICRRFTELMGG 994 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHP 816 + ++ S +G+ + PL + P Sbjct: 995 RIWVESIEGQGSTFHMTLPLVLSHTP 1020 >gi|197311343|gb|ACH61904.1| putative blue light receptor protein [bacterium enrichment culture clone pWThLOV] Length = 1204 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 82/270 (30%), Positives = 153/270 (56%), Gaps = 13/270 (4%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ K+ + L K+ AE S K++FL+R+SHE+RTPL A+IGFS+++K Sbjct: 801 TYSDITRLKEAEKALRD-KQAAELASRSKTEFLSRMSHEMRTPLNAMIGFSQLLKLSATN 859 Query: 617 PLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + + YA+++ ++G +L ++ND+LD+ ++E+G++ ++ E +SL + +A+ L+ Sbjct: 860 AQPSASQVRHYADHMLQAGQHLLALINDVLDLQRVETGQLTINIETISLRRTIEQALELL 919 Query: 676 QLYANEKRILIRTSFANNIPR---ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 A+ + SF N I + AD + ++Q+ +NI+SNAI + G + ++ Sbjct: 920 APLAHASAV----SFDNRIDEDVLVRADAQRLRQVLINIISNAIKYNRPDGVVRLTLGDR 975 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + + + + DTG G+ +L + +PF ++ + EGTGLGL +AK ++D G Sbjct: 976 QGDAIDVLIEDTGEGLRPDQLARLFQPFERL-GRETSPIEGTGLGLIIAKRLIDEMKGSI 1034 Query: 793 YIFSTPAKGTLIEIIFPLYD---TSHPHDC 819 + S P KGT + ++ L + + PH+ Sbjct: 1035 EVSSEPGKGTCVTLMVRLAEQAPAALPHEA 1064 >gi|327479684|gb|AEA82994.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri DSM 4166] Length = 1239 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 103/372 (27%), Positives = 189/372 (50%), Gaps = 28/372 (7%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 ++EA+ + +++ +G I+ NR LFGY +++L +P + L + Sbjct: 472 VVEASPNAFVLVDTQGSIVMVNRQTELLFGYTRQELLGQPVELLLPEALRDAHR------ 525 Query: 517 LSLDLRQTL----EKITLGSTKEEKLL-----SLRIIIKKLPFSS----CYSLTMHDISE 563 LRQ E +GS +E L +L + I P S + DIS Sbjct: 526 ---GLRQGYTEHPEPRRMGSNRELFGLHRDGSALPVEIGLSPLRSGDEQLVQAVIIDISH 582 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K + +L + +KS+FLA +SHE+RTPL +I+ S+ ++ G L N + Sbjct: 583 RKAAERRLREQADQLAVANRYKSEFLANMSHELRTPLNSILILSDQLRQNGAGNL-NDKQ 641 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + +A+ I R+G+ +L ++ND+LD++KIESG M L EP++L + + + + + A +K Sbjct: 642 VRHADIIHRAGHELLQLINDVLDLAKIESGHMQLKLEPLNLRDLLRDLEASLGSMAAQKG 701 Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VI 738 + + +P L +D ++QI N+L+NA+ FT G ++++ ++++ V Sbjct: 702 LSLTMEVDPAVPLTLNSDRARLQQILNNLLTNALKFTEKGQVELMASLLPADQDGRQMVQ 761 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 L+VRD+G+G+ + E+ + F QI S GTGLGL + + +V+ G+ + S Sbjct: 762 LQVRDSGIGIAKDQQERIFQAFQQIDGSISRHYGGTGLGLAITRQLVEVLGGQVMVNSEL 821 Query: 799 AKGTLIEIIFPL 810 +G ++ P+ Sbjct: 822 GQGATFTVLLPV 833 >gi|307718270|ref|YP_003873802.1| hypothetical protein STHERM_c05640 [Spirochaeta thermophila DSM 6192] gi|306531995|gb|ADN01529.1| hypothetical protein STHERM_c05640 [Spirochaeta thermophila DSM 6192] Length = 1272 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 106/374 (28%), Positives = 183/374 (48%), Gaps = 11/374 (2%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 + +E ++ +I + G II+ I+ N ++++ GY +E+++ + ++F Sbjct: 648 QRATVERQMRLFKAIADTAPYGTVIIDANHTIVYANPYMARIHGYRLEEVMGQHLSIFHT 707 Query: 503 QNTPSVMNHYLT--EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 + + LT E + + Q + + G L + I + + + D Sbjct: 708 EEQYEKLIEELTRAEDVGVMPSQEIWHVYQGQLPFPMLTTATFIKDEEGHVTYIGIVSLD 767 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 +S K+ + KL AK+ AE+ KS+FLA +SHEIRTPL AIIGF++++ + P G Sbjct: 768 MSLQKEAEQKLKEAKEEAERAMRAKSEFLANMSHEIRTPLNAIIGFTDLLASS--FPSG- 824 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + Y + I SG +L ++ND+LD+SKIE+GKM L + PV L + E ++ + Sbjct: 825 -KEASYLDAIRSSGKNLLMLINDILDLSKIEAGKMTLSYSPVDLRSFIEEIANIFRTQVE 883 Query: 681 EKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSG--GQIIISTTHTSNEEV 737 K + +A + P + D ++Q+ N++ NAI FT G + + HT +V Sbjct: 884 HKGLSFILDYAPALPPTVEIDELRLRQVLFNLIGNAIKFTEQGHVKVQVRGSLHTEESKV 943 Query: 738 --ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V DTG+G+ E E + F Q + GTGLGL ++K +V+ G + Sbjct: 944 DLTISVEDTGIGIRPEEREAIFQSFHQSSGQDTRKYGGTGLGLTISKRLVEMMGGTISVE 1003 Query: 796 STPAKGTLIEIIFP 809 S KGT + P Sbjct: 1004 SEYGKGTTFTVNIP 1017 >gi|170727319|ref|YP_001761345.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169812666|gb|ACA87250.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 1340 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/247 (34%), Positives = 136/247 (55%), Gaps = 8/247 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E KQ + +L AK+ A++ S K DFLA +SHEIRTP+ AIIG S + N Sbjct: 576 DVTERKQMEVELRKAKEAADEVSKAKGDFLANMSHEIRTPMNAIIGMSHLALNADL---- 631 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 NP+ Y + ID + +L I+ND+LD SK+E+GK+ LDE + +++ + A Sbjct: 632 NPKQRGYVSKIDMAAKSLLGIINDILDFSKMEAGKLVTEDVDFRLDEVLDNLTNIIAVKA 691 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 EK + +IP ++ D + Q+ +N+ NAI FT SG ++ +E+ + Sbjct: 692 EEKGLEFLFDIDPHIPLALVGDPLRIGQVLINLCGNAIKFTDSGEVVVGVKLLNKSEDGL 751 Query: 739 ---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 VRD+G+G++ + +K K F Q S + GTGLGL ++K +V+ GK ++ Sbjct: 752 NLQFNVRDSGIGLSQEQQDKLFKSFSQADASITRKYGGTGLGLTISKRLVEIMGGKIWVT 811 Query: 796 STPAKGT 802 S +G+ Sbjct: 812 SDEGQGS 818 >gi|225026716|ref|ZP_03715908.1| hypothetical protein EUBHAL_00968 [Eubacterium hallii DSM 3353] gi|224955977|gb|EEG37186.1| hypothetical protein EUBHAL_00968 [Eubacterium hallii DSM 3353] Length = 961 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 135/238 (56%), Gaps = 6/238 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 KL A K AE S K+ FL +SH+IRTP+ I+G++++++N+ G P +E+ Sbjct: 557 KLEIALKKAEDASLAKTSFLNNMSHDIRTPMNVILGYAQLMENELNGK-DIPEVLEHLEK 615 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + +SGNL+L I+N++LD+++IESG+M + +++ ++ A +K I + + Sbjct: 616 LQQSGNLLLSIINNVLDMARIESGRMEIDENYCRIEDVWKSLFAVFDEKARKKNISLHYT 675 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDT 744 +L D+ VK+I +NILSNAI +TP+GG +++ +E V +R+ DT Sbjct: 676 MNVEHEHVLTDVTKVKEILVNILSNAIKYTPAGGSVMVYVDELPCDESGYMIVRIRISDT 735 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+GM+ L K + F + N+ + + GTGLG+ + K VD G + S KG+ Sbjct: 736 GIGMSQDYLTKIFEAFTREKNTTKSKIAGTGLGMSIVKNYVDLLGGTIDVESELGKGS 793 >gi|144898961|emb|CAM75825.1| PAS [Magnetospirillum gryphiswaldense MSR-1] Length = 1444 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 90/254 (35%), Positives = 137/254 (53%), Gaps = 8/254 (3%) Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 ++ DI+ KQ + +L+ AK++AE + KSDFLA +SHEIRTP+ AIIG S + Sbjct: 681 VWAGFFQDITAVKQAEAELTRAKELAEDATRMKSDFLANMSHEIRTPMNAIIGMSHLTLK 740 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 PL PR +Y I +G +L I+ND+LD SKIE+GK+ + LD+ + Sbjct: 741 T---PL-TPRQHDYVKKIQGAGQHLLGIINDILDFSKIEAGKLTVEHIGFDLDKVLDNIA 796 Query: 673 SLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTT 730 SL+ N K + + +++PR L D + QI +N +NA+ FT G II+ Sbjct: 797 SLLTEKTNAKNLELVFDVPSDVPRALVGDSLRLGQILINYANNAVKFTEKGEIDIIVRVQ 856 Query: 731 HTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + EV+L VRDTG+G+T + + + F Q S + GTGLGL ++K + + Sbjct: 857 ERTQTEVVLYFAVRDTGIGITPEQKARLFQSFEQADTSTTRKFGGTGLGLAISKKLAELM 916 Query: 789 MGKFYIFSTPAKGT 802 G + S KG+ Sbjct: 917 DGAVGVESEYGKGS 930 >gi|90021056|ref|YP_526883.1| Signal transduction histidine kinase-like protein [Saccharophagus degradans 2-40] gi|89950656|gb|ABD80671.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans 2-40] Length = 685 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 86/264 (32%), Positives = 151/264 (57%), Gaps = 11/264 (4%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI---K 611 S T DI++ KQ + K+ AK++AEK + KS+FL+ +SHE+RTPL AI+GF+++ K Sbjct: 274 SGTNMDITQLKQAEEKVVKAKELAEKANKAKSEFLSSMSHELRTPLNAILGFAQLFELDK 333 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 N NP E I+++G +L+++ D+LD++KIE+GKM+ E ++ V E Sbjct: 334 NL------NPAQRENIGEIEKAGKHLLELIGDVLDLAKIEAGKMDFELEQLNPMRLVDEC 387 Query: 672 ISLVQLYANEKRILIRT-SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 I L++ A + R+ I +F + AD +KQ+ +N++SNAI + G++ I + Sbjct: 388 IPLMRPLAVKNRVEINVHNFELGNASVRADSVRLKQVFINLISNAIKYNRKDGRVDIVFS 447 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 T + + V+DTG G+ + + +PF ++ +++ EG+G+GL + + +V+ G Sbjct: 448 ETEEGHLRVSVQDTGFGIPLKQQKYMFQPFNRL-GAERGEIEGSGVGLVITRQLVEQMGG 506 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTS 814 + S KG+ + PLY S Sbjct: 507 ELGFSSDEGKGSKFWVQLPLYSES 530 >gi|117619924|ref|YP_857513.1| virulence sensor protein BvgS [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561331|gb|ABK38279.1| virulence sensor protein BvgS [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1089 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 114/395 (28%), Positives = 181/395 (45%), Gaps = 35/395 (8%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 ++R++E V + ++ E+ I + ++ G ++ N + P+E +L F L+ Sbjct: 558 SRRQLEEHVRFIEALGESLPHPIVVRDKSGKVILCNSKYLAILNAPIERVLGTSFAEGLK 617 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH--- 559 ++ L D +Q L+ GS +LS RI ++ P Y + Sbjct: 618 ----GLLGAEAITTLEQDFQQVLQS---GS----PILSDRIFSQRGPRQFVYHWMVPYFD 666 Query: 560 -------------DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 DI+E K + L AK+ A++ S KSDFLA +SHEIRTP+ AI+G Sbjct: 667 YRGAISGVINGWIDITERKTMEEALRRAKEQADRASRAKSDFLATMSHEIRTPMNAILGM 726 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 E+ P P E S N +LD++ D+LDIS IESG++ L EP L Sbjct: 727 LELASQD---PALAPYTGEQLRIASESANGLLDLIGDVLDISSIESGQLTLAPEPCELAP 783 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 + A +K + R + +PR+L D ++QI N+L NAI FT G + Sbjct: 784 LLHSVARAFAGMAKQKGLSYRVEL-DPLPRVLIDGPRLRQIVFNLLGNAIKFTERGEVSL 842 Query: 727 ISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 ++ S + ++ L +RD+GVG+ +L PF + + Q GTGLGL +A+ + Sbjct: 843 QASLVGSAQQPQLHLLIRDSGVGIAPDKLPGLFNPFYRAHDPYQF--AGTGLGLNIARML 900 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 GK + S GT + I PL + C Sbjct: 901 CQLMGGKIAVSSELGAGTELRIRLPLTPLAPEPAC 935 >gi|120601365|ref|YP_965765.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] gi|120561594|gb|ABM27338.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] Length = 1080 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 141/247 (57%), Gaps = 12/247 (4%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPLGNP 621 E + + A++ AE+ES +DFLA ++HE+RTP+T IIG ++ ++ Q P Sbjct: 244 EVSERTAEFVGARERAERESKAMADFLAAITHEVRTPMTGIIGLLDISLRGQL-----EP 298 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 R E+ + S + +LD++N +LD S+IE+GK+ + P +L E+V + + L + + E Sbjct: 299 RLREHLEIVRSSSHALLDVINGVLDFSRIEAGKLRIERIPFALRESVEDVLDLFRAHLAE 358 Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEVI 738 + + + A+++P ++ D ++Q+ +NI+ NA FT G+I++ +H + V+ Sbjct: 359 RDVALVLDMASDLPCKVAGDPTRLRQVLVNIVGNAFKFTEQ-GEIVVRISHERQGDGSVL 417 Query: 739 LR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 LR VRDTGVG+ ++ + F Q S R G+GLGL +A+ +V G + S Sbjct: 418 LRFAVRDTGVGIPAEARKRLFEMFSQADASVARRFGGSGLGLAIARELVRLMGGSIEVDS 477 Query: 797 TPAKGTL 803 TP +GT+ Sbjct: 478 TPGRGTV 484 >gi|83745642|ref|ZP_00942700.1| Two component system histidine kinase / Two component response regulator [Ralstonia solanacearum UW551] gi|83727719|gb|EAP74839.1| Two component system histidine kinase / Two component response regulator [Ralstonia solanacearum UW551] Length = 668 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 89/259 (34%), Positives = 139/259 (53%), Gaps = 13/259 (5%) Query: 560 DISEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 DI+E +Q + + S A++ AE+ S K DFLA VSHE+RTPL A++G+++++ Sbjct: 259 DITEHRQTEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLAM 318 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + P + I+RS + +++DLLD+S I SGK+ L PV L + + A Sbjct: 319 R---PYDEAMFRRGLEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERAR 375 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 ++ A +K+I I T + +P + D +KQ+ N+L+NA+ FTP GG I + Sbjct: 376 ETIEPMARQKQIAIDTEY-PPVPLLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVC-VQA 433 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 S E ++ VRDTG+G+ L F Q S R G GLGL +AK +V+ + G+ Sbjct: 434 SPEGLVATVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRI 493 Query: 793 YIFSTPAK-GTLIEIIFPL 810 S A GT + + PL Sbjct: 494 TAASNGANLGTTMAVTLPL 512 >gi|307154390|ref|YP_003889774.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306984618|gb|ADN16499.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 561 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/260 (30%), Positives = 139/260 (53%), Gaps = 7/260 (2%) Query: 555 SLTMHDIS---EW-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 +L +H + +W Q+ KL K+ E S+FL HE+R+PLT I+ FS+++ Sbjct: 305 ALAIHHLQYQDQWLTQQIEKLEAQKQQLEFAKKKTSEFLDHTIHELRSPLTGILSFSQIL 364 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 Q +G L N + +Y + I SG +L +VND LD+SKI + + + E +++++ Sbjct: 365 HEQIYGSL-NAKQSQYVDVIVSSGQYMLSLVNDFLDLSKISAQREEIVLEAMAVEDVCLA 423 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 A+++V++ A ++ ++ A ++ AD R +KQI +N+L+NAI FT G + Sbjct: 424 ALAMVEVRAVASQLTLKLDIAPDVDFCKADQRRIKQILVNLLTNAIKFTEKGS--VTLKV 481 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + V DTG+G+ + K +PF QI N + +GTGLGL L++ + + G Sbjct: 482 ERKQDYLDFSVIDTGIGIKTEDQNKLFQPFQQIKNHLSRKHKGTGLGLALSRQLAQLHGG 541 Query: 791 KFYIFSTPAKGTLIEIIFPL 810 + S +G+ + P+ Sbjct: 542 DITLVSQEGQGSCFTLHLPI 561 >gi|292492033|ref|YP_003527472.1| PAS sensor protein [Nitrosococcus halophilus Nc4] gi|291580628|gb|ADE15085.1| PAS sensor protein [Nitrosococcus halophilus Nc4] Length = 788 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 105/360 (29%), Positives = 178/360 (49%), Gaps = 28/360 (7%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 RK+ QL +I+E+++D I + GII S N+ LFGY E+++ +P Sbjct: 261 RKLSERAAQLSAIVESSTDAILSQDLNGIIQSWNQGAEHLFGYKAEEMIGQPI------- 313 Query: 505 TPSVMNHYLTEILSLDLR-QTLEKI----TLGSTKEEKLLSLRIIIKKLPFSS----CYS 555 P + +H E + + R + E++ T+ K+ +++ + I L S S Sbjct: 314 APLIPSHRKKEEIQMRKRIKRGERVAPYETVRLHKDGSEVTISLTISPLQDSQGRLIGAS 373 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 DI+E+K ++ +L ++ + K +FLA ++HE+R PL I +++K Sbjct: 374 KIARDITEYKHQQEQLRRQAELLTETDRRKDEFLATLAHELRNPLAPIANSLQILKQ--- 430 Query: 616 GPLG-NPRYIEYANYI-DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA-- 671 +G NP +E A I +R ++ +V DLLD+S+I GK+ L EPV+LD + A Sbjct: 431 --VGNNPEALEKAVSISERQLQHLVHLVEDLLDVSRITRGKIQLRKEPVTLDTIIKSALE 488 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 IS + A E + + + + ADL + Q N+L NA +TP GG I + T Sbjct: 489 ISRSHIKAGEHTLCVEVPETQVL--LQADLTRLAQAVSNLLINAAKYTPPGGHIKL-TAR 545 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 N++V++ V+D G+G+ L + F Q G G+GLPL K +V+ + G+ Sbjct: 546 CENQQVVIAVQDDGIGIAQELLPRIFDMFVQAERPGGYAPGGLGIGLPLVKGLVELHGGQ 605 >gi|34558037|ref|NP_907852.1| sensor/response regulator hybrid [Wolinella succinogenes DSM 1740] gi|34483755|emb|CAE10752.1| SENSOR/RESPONSE REGULATOR HYBRID [Wolinella succinogenes] Length = 1263 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 83/239 (34%), Positives = 134/239 (56%), Gaps = 11/239 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK++AE + KS+FL+ +SHEIRTPL +I+GF+E++++ G + RY A Sbjct: 784 ELLKAKELAESANRAKSEFLSNMSHEIRTPLNSILGFAEILQHSSLG-IKEQRY---AEN 839 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I +SG +++DI+ND+LD+S++E+GKM + PV L+ V E L + A EK + + Sbjct: 840 ILKSGKVLMDIINDILDLSRVEAGKMLIQKHPVELEALVREVYGLFLMKAKEKNLDLDLV 899 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EVILRVRD 743 +P+IL D V+QI N++ NAI FT G + IS E E++LR++D Sbjct: 900 IDERLPKILVIDGTRVRQILFNLVGNAIKFTHK-GYVRISVERGERESEGGIELVLRIKD 958 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+G+ + K + F Q GTGLGL + + + G+ + S G+ Sbjct: 959 SGIGIAQADSNKIFEAFEQQSGQDNRLYGGTGLGLAICQRLARLMDGEISLVSQEGLGS 1017 >gi|319427574|gb|ADV55648.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens 200] Length = 1770 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 85/251 (33%), Positives = 139/251 (55%), Gaps = 8/251 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 ++M D++E K ++L AK+ A+ S K DFLA +SHEIRTP+ AIIG S++ Sbjct: 1011 VSMVDMTELKLLSDELLIAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTAL 1070 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + + Y I+R+ +L I+ND+LD SKIE+GK+++ P LD + + + Sbjct: 1071 ----DKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLSDMF 1126 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTS 733 K++ + + A N+PR + D + Q+ +N+++NAI FT G ++ I+ Sbjct: 1127 SEKVVHKQLELLFAVAPNVPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLLSINLVEQQ 1186 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 N++V LR VRD+G+G+T+ + K K F Q S + GTGLGL + K +V+ G Sbjct: 1187 NDDVTLRFSVRDSGIGLTDEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGN 1246 Query: 792 FYIFSTPAKGT 802 + S G+ Sbjct: 1247 IGVESQFGHGS 1257 >gi|46581465|ref|YP_012273.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46450887|gb|AAS97533.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|311235117|gb|ADP87971.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1] Length = 1080 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 141/247 (57%), Gaps = 12/247 (4%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPLGNP 621 E + + A++ AE+ES +DFLA ++HE+RTP+T IIG ++ ++ Q P Sbjct: 244 EVSERTAEFVGARERAERESKAMADFLAAITHEVRTPMTGIIGLLDISLRGQL-----EP 298 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 R E+ + S + +LD++N +LD S+IE+GK+ + P +L E+V + + L + + E Sbjct: 299 RLREHLEIVRSSSHALLDVINGVLDFSRIEAGKLRIERIPFALRESVEDVLDLFRAHLAE 358 Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEVI 738 + + + A+++P ++ D ++Q+ +NI+ NA FT G+I++ +H + V+ Sbjct: 359 RDVALVLDMASDLPCKVAGDPTRLRQVLVNIVGNAFKFTEQ-GEIVVRISHERQGDGSVL 417 Query: 739 LR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 LR VRDTGVG+ ++ + F Q S R G+GLGL +A+ +V G + S Sbjct: 418 LRFAVRDTGVGIPAEARKRLFEMFSQADASVARRFGGSGLGLAIARELVRLMGGSIEVDS 477 Query: 797 TPAKGTL 803 TP +GT+ Sbjct: 478 TPGRGTV 484 >gi|326796477|ref|YP_004314297.1| integral membrane sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] gi|326547241|gb|ADZ92461.1| integral membrane sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] Length = 854 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 87/255 (34%), Positives = 139/255 (54%), Gaps = 4/255 (1%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ + A+ AEK S+ KS+FLA++SHE+RTPL AIIG SE++ G+ Sbjct: 354 EAEEHRESAERARDDAEKASAVKSEFLAKMSHELRTPLNAIIGLSEMMHEDAV-EFGDED 412 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 YIE + RS +L+++N++LDISKIE+GKM L + D + E V+ A K Sbjct: 413 YIEPLERVVRSSKHLLNLINEILDISKIEAGKMELSEAELDFDAVLEEVFQTVEPIAKGK 472 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + A ++ I+ D +KQI N+LSNA+ FT S G++ + S+ ++ + V Sbjct: 473 PLSFEYESA-SVGVIVGDALRIKQIFFNLLSNAVKFTES-GKVKLKVVEQSD-QLQVDVI 529 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+GM+ + E + F Q+ +S + EGTGLGL +++ G + S KG+ Sbjct: 530 DTGLGMSIEQTETLFQDFVQVDSSVNRKFEGTGLGLAISRRFARMMNGDITVQSEVGKGS 589 Query: 803 LIEIIFPLYDTSHPH 817 + + P+ S Sbjct: 590 VFSVRLPVKRVSQTQ 604 >gi|117926642|ref|YP_867259.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610398|gb|ABK45853.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1059 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/261 (32%), Positives = 139/261 (53%), Gaps = 8/261 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++ K+ + LS AK+ AE + KS FLA +SHEIRTPL I G E+++ Sbjct: 514 DVTPLKETERALSTAKQEAESANHAKSAFLATMSHEIRTPLNGITGMIELLQRSAL---- 569 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + I + +++DI+ND+LD+SKIE+G++ L P S + + + ++Q A Sbjct: 570 SVEQRQQVETISKCSVVLMDILNDILDLSKIEAGQLVLERAPFSPTQLLLNLLEVMQPQA 629 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K + ++ + +P +L D ++Q+ALN++ NAI FTP G I H ++++ Sbjct: 630 RNKELDLQLNMDEKLPSTMLGDATRLRQVALNLIGNAIKFTPRGWVKISLLVHERIDDIV 689 Query: 739 ---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 L V+D G+G+ + +L PF Q +S GTGLGL ++K +V+A G + Sbjct: 690 WVELAVQDQGIGIADEKLVHLFNPFTQADSSITRNYGGTGLGLAISKRLVEAMAGAISVT 749 Query: 796 STPAKGTLIEIIFPLYDTSHP 816 S KGT + P+ P Sbjct: 750 SIEGKGTHFRVTLPMQVAHTP 770 >gi|15596125|ref|NP_249619.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1] gi|107100384|ref|ZP_01364302.1| hypothetical protein PaerPA_01001409 [Pseudomonas aeruginosa PACS2] gi|116048851|ref|YP_792348.1| sensor/response regulator hybrid [Pseudomonas aeruginosa UCBPP-PA14] gi|218893103|ref|YP_002441972.1| sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58] gi|254239279|ref|ZP_04932602.1| sensor/response regulator hybrid [Pseudomonas aeruginosa C3719] gi|254245212|ref|ZP_04938534.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 2192] gi|296390719|ref|ZP_06880194.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAb1] gi|9946832|gb|AAG04317.1|AE004527_4 sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1] gi|2623815|gb|AAB86557.1| two component sensor [Pseudomonas aeruginosa PAO1] gi|115584072|gb|ABJ10087.1| sensor/response regulator hybrid [Pseudomonas aeruginosa UCBPP-PA14] gi|126171210|gb|EAZ56721.1| sensor/response regulator hybrid [Pseudomonas aeruginosa C3719] gi|126198590|gb|EAZ62653.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 2192] gi|218773331|emb|CAW29143.1| sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58] Length = 925 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 82/238 (34%), Positives = 140/238 (58%), Gaps = 10/238 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ +PR +Y Sbjct: 269 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSEL----SPRQQDYLTT 324 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRT 688 I +S +L I+N++LD SKIE+GK+ L P +L + + +A++++ A+EK++ L+ Sbjct: 325 IQKSAESLLGIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSL 384 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--HTSNEEVILR--VRDT 744 + + ++ D + +KQI N++ NAI FT GG + + S++ LR V+DT Sbjct: 385 VYRDTPIQLQGDPQRLKQILTNLVGNAIKFT-QGGTVAVRAMLEDESDDRAQLRISVQDT 443 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G++ + + K F Q NS + GTGLGL ++K +++ G+ + STP +G Sbjct: 444 GIGLSEEDQQALFKAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGA 501 >gi|330504046|ref|YP_004380915.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] gi|328918332|gb|AEB59163.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] Length = 916 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 142/237 (59%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ +PR +Y + Sbjct: 269 ELDFARKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSEL----SPRQQDYLST 324 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+EK++ + + Sbjct: 325 IEKSADSLLGIINEVLDFSKIEAGKLVLESIPFNLRDLLQDTLTILAPAAHEKQLELVSL 384 Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTG 745 + P L D +KQ+ N++SNAI FT G + ++ T + ++ + V DTG Sbjct: 385 IYRDTPLALRGDPLRLKQVLTNLVSNAIKFTREGTIVMRAMVEDESTDSAQLRISVMDTG 444 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ +L + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 445 IGLSDEDLRALFQAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 501 >gi|313105812|ref|ZP_07792075.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 39016] gi|310878577|gb|EFQ37171.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 39016] Length = 925 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 82/238 (34%), Positives = 140/238 (58%), Gaps = 10/238 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ +PR +Y Sbjct: 269 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSEL----SPRQQDYLTT 324 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRT 688 I +S +L I+N++LD SKIE+GK+ L P +L + + +A++++ A+EK++ L+ Sbjct: 325 IQKSAESLLGIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSL 384 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--HTSNEEVILR--VRDT 744 + + ++ D + +KQI N++ NAI FT GG + + S++ LR V+DT Sbjct: 385 VYRDTPIQLQGDPQRLKQILTNLVGNAIKFT-QGGTVAVRAMLEDESDDRAQLRISVQDT 443 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G++ + + K F Q NS + GTGLGL ++K +++ G+ + STP +G Sbjct: 444 GIGLSEEDQQALFKAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGA 501 >gi|119472186|ref|ZP_01614388.1| sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain [Alteromonadales bacterium TW-7] gi|119445105|gb|EAW26399.1| sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain [Alteromonadales bacterium TW-7] Length = 889 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 117/421 (27%), Positives = 204/421 (48%), Gaps = 47/421 (11%) Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 +A Q +N+ + + D ++ +++ M SIL++ S I + G+I N Sbjct: 348 EAEQAHKNILEQANLKLETDVKLRTQQIADISMLQRSILDSASYSIIATDINGLITEFNP 407 Query: 480 AVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEI------LSLDLRQTL----EKI 528 A KL GY D++ +K ++F H TE+ LS++L + + E + Sbjct: 408 AAEKLLGYKAFDVVGKKTCSIF----------HVETELTSKAKQLSIELNKIVSPGFETL 457 Query: 529 TLGSTKEEK-----------------LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 + +T E LS+ ++ + D+++ + + L Sbjct: 458 IVKTTPTEPDVNQWTYVDSKGRHIQVSLSVTSLLNNRAQVVGFLGIAFDLTQQIKHEQAL 517 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR--YIEYANY 629 +HAK++AE+ S KS+FLA +SHEIRTP+ I+G ++++ Q P+ + Y++ A Y Sbjct: 518 AHAKELAEQSSKTKSEFLANMSHEIRTPMNGILGTLQLLQEQ---PMNDKSTDYLKKALY 574 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 RS + I+ND+LD SKIE+GK++L + LDE + S + + A EK I ++ Sbjct: 575 STRS---LTTIINDILDFSKIEAGKLSLEQKVFELDELIHHLESDLLVPAQEKNIYLKFK 631 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 + D ++Q+ LNI+ NAI FT GG + + T +E+V V DTG+G+ Sbjct: 632 STIHHKYWRGDAVRIRQVFLNIIYNAIKFTHKGG-VTVEFKLTDDEQVCAIVSDTGIGIP 690 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + + F Q +S GTGLGLP+ K++++ G + S G+ + P Sbjct: 691 KNVVNRLFERFEQAESSTTREYGGTGLGLPITKSLINLMDGDIKVTSEEGVGSQFYVYLP 750 Query: 810 L 810 L Sbjct: 751 L 751 >gi|160936268|ref|ZP_02083641.1| hypothetical protein CLOBOL_01164 [Clostridium bolteae ATCC BAA-613] gi|158441078|gb|EDP18802.1| hypothetical protein CLOBOL_01164 [Clostridium bolteae ATCC BAA-613] Length = 1122 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 85/258 (32%), Positives = 137/258 (53%), Gaps = 9/258 (3%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 ++T+ DI+E +Q + +L A + + ++ KS FLA +SH+IRTPL A+IG + + Sbjct: 463 TVTLEDITEREQSRRRLEEALESEARANAAKSTFLASMSHDIRTPLNAVIGLTNL---AL 519 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 + P + + E I S L+L ++ND+LD+SKIESGKM L L E +S +++ Sbjct: 520 YSPEDSKKVTECLQKIANSSQLLLGLINDVLDMSKIESGKMQLAETEFELGEWLSGVVTV 579 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 Q + + N +L D + Q+ N+L NA+ FTP G+I + T Sbjct: 580 TQSQTGVRSQHFDVNVWNITHELLCGDTVRLGQVLTNVLGNAVKFTPKDGEIYLDITEVP 639 Query: 734 NEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 +++ + RV DTGVGM+ + + + F + NS + +GTGLG+ + K +VD Sbjct: 640 SQDPSFASFVFRVSDTGVGMSREYMGRIFEMFSRDQNSYKQGIQGTGLGMAITKRIVDLM 699 Query: 789 MGKFYIFSTPAKGTLIEI 806 G + S P KGT I Sbjct: 700 GGTIRVESEPEKGTTFTI 717 >gi|239616849|ref|YP_002940171.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1] gi|239505680|gb|ACR79167.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1] Length = 958 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 88/240 (36%), Positives = 133/240 (55%), Gaps = 7/240 (2%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A A + S KS+FLA +SHE+RTP+ AI+GF+E++ ++ N ++ I Sbjct: 324 LRKATAEARQASRMKSEFLANMSHEMRTPMNAILGFTELLLSEE----TNEEKRKHLVTI 379 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 RSG +L ++ND+LD+SKIESGKM ++ E S + E + A K + + S Sbjct: 380 YRSGEHLLSLINDVLDLSKIESGKMQIYEEIYSPRNLLKELVETYLPMAYSKGLHLAYSL 439 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 NN+P ++ D +KQI N++SN I FT S G I I + + + V DTG+G+ Sbjct: 440 DNNVPEYVVGDAFRIKQILTNLVSNGIKFT-SQGYITIQANYKEGK-ITYIVNDTGIGIP 497 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L+K +PF Q+ + + G GLGL + K +VD GK YI S KGT + + P Sbjct: 498 EEKLDKIFEPFTQLDRTMSRKYGGMGLGLAITKKLVDLMNGKLYIESHIGKGTKVVVSLP 557 >gi|17230934|ref|NP_487482.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132575|dbj|BAB75141.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 865 Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 107/350 (30%), Positives = 181/350 (51%), Gaps = 27/350 (7%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN----TPSVMNHY 512 + E+ G+A N +G I N A +L GY R+ F + N TP H Sbjct: 357 LFESNLIGVAFWNVDGFITDANDAYLQLVGYT-----REQFNTLGKINWRELTPPDYKHL 411 Query: 513 ----LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISEWK-- 565 + E+ + + + EK + + + +S+ + I L S + + DISE K Sbjct: 412 DDRAIAEVKTNGISRIYEKQYI--QRNGRRVSIVLGIALLDDSDEQGVAFVLDISERKLA 469 Query: 566 -QEKNKLSHAKKIAEKESSH----KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 Q++++L A++IA K++ K +FLA +SHE+RTPL I+G+S+++++++F Sbjct: 470 EQQRDRLLCAERIARKDAEIANRIKDEFLAVLSHELRTPLNPILGWSKLLRSRQFDAATT 529 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 R +E I+R+ L ++ DLLD+S+I GK++L+ PVSL + AI V+L A Sbjct: 530 DRALET---IERNATLQTQLIEDLLDVSRILQGKLSLNICPVSLPIVIGAAIDTVRLAAE 586 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K I I+ F N+ +++ D ++Q+ N+LSNA+ FT GG + I N++ ++ Sbjct: 587 AKEIKIQNVFDPNLGQVMGDANRLQQVVWNLLSNAVKFTSPGGTVEIH-LKAVNDQAQIQ 645 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 V DTG G+T L F Q + G GLGL + + +V+ + G Sbjct: 646 VIDTGKGITPEFLPYVFDYFRQADGTTTRNFGGLGLGLAIVRQVVELHGG 695 >gi|300694191|ref|YP_003750164.1| sensory histidine kinase in two-component regulatory system [Ralstonia solanacearum PSI07] gi|299076228|emb|CBJ35542.1| sensory histidine kinase in two-component regulatory system [Ralstonia solanacearum PSI07] Length = 675 Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 89/259 (34%), Positives = 141/259 (54%), Gaps = 13/259 (5%) Query: 560 DISEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 DI+E +Q + + S A++ AE+ S K DFLA VSHE+RTPL A++G+++++ Sbjct: 266 DITERRQAEARRAQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLAM 325 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + + R +E I+RS + +++DLLD+S I SGK+ L PV L + + A Sbjct: 326 RPYDEATFRRGLE---AIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERAR 382 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 ++ A +K+I + +P + D +KQ+ N+L+NA+ FTP GG I +S H Sbjct: 383 ETIEPMARQKQIAVDME-CQPVPLLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVS-VHA 440 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 S E ++ VRDTG+G+ L F Q S R G GLGL +AK +V+ + G+ Sbjct: 441 SAEGLVATVRDTGIGIEPTFLPHIFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRI 500 Query: 793 YIFSTPAK-GTLIEIIFPL 810 S+ GT + + PL Sbjct: 501 TAASSGTDLGTTMAVTLPL 519 >gi|70731797|ref|YP_261539.1| sensor protein GacS [Pseudomonas fluorescens Pf-5] gi|10178628|gb|AAG13658.1|AF246292_1 sensor kinase GacS [Pseudomonas fluorescens] gi|68346096|gb|AAY93702.1| sensor protein GacS [Pseudomonas fluorescens Pf-5] Length = 917 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 142/237 (59%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQLDYLGT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRT 688 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ Sbjct: 326 IEKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTG 745 + + ++ D +KQI N++SNAI FT G + ++ H + ++ + ++DTG Sbjct: 386 VYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISIQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++N ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 446 IGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|26988382|ref|NP_743807.1| multi-sensor hybrid histidine kinase [Pseudomonas putida KT2440] gi|24983135|gb|AAN67271.1|AE016353_11 sensor histidine kinase/response regulator GacS [Pseudomonas putida KT2440] Length = 917 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 141/237 (59%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y N Sbjct: 271 ELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEM----TPRQLDYLNT 326 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ + + Sbjct: 327 IEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSL 386 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTG 745 + P ++ D +KQI N++SNAI FT G ++ + H ++ + V+DTG Sbjct: 387 IYRDTPASLVGDPLRLKQILTNLVSNAIKFTREGTIVVRAMLEDEHEDCAQLRISVQDTG 446 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 447 IGLSPQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 503 >gi|300868056|ref|ZP_07112694.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300333976|emb|CBN57872.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 1224 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 94/299 (31%), Positives = 148/299 (49%), Gaps = 47/299 (15%) Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 SCY T+ DIS+ K+ + A + AE + KS FLA +SHE+RTPL AIIG+SE++ Sbjct: 644 SCYEGTVEDISDRKKAEVSCQLALEAAESANRAKSTFLANMSHELRTPLNAIIGYSEMLA 703 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE----PVSLDEA 667 + L +I + I +G +L ++ND+LDISKIE+G+M+++ E P +D Sbjct: 704 EEA-EDLAVKDFIPDLDKIRTAGKHLLSLINDILDISKIEAGRMDVYLENFDIPALIDGV 762 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 V+ A LV+ N ++L N+ + AD+ ++QI LN+LSNA FT G I + Sbjct: 763 VATAQPLVEKNGNTLKVLC----PNSTGTMYADVTKMRQILLNLLSNAAKFTQE-GTITL 817 Query: 728 STTHTSNEE-------------------------------------VILRVRDTGVGMTN 750 + +E+ +I RV DTG+GM Sbjct: 818 TVERVKHEKLTSPEVNFIPEQSQGTLLGLLQNPDILSQFLIYDCDSLIFRVADTGIGMNP 877 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L++ +PF Q S + GTGLGL +++ G + S +GT+ ++ P Sbjct: 878 QQLKQLFQPFTQGDASTTRKYGGTGLGLAISQRFCQMMGGDIAVESALGEGTVFTVVLP 936 >gi|329850157|ref|ZP_08265003.1| mmoS [Asticcacaulis biprosthecum C19] gi|328842068|gb|EGF91638.1| mmoS [Asticcacaulis biprosthecum C19] Length = 757 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 102/363 (28%), Positives = 180/363 (49%), Gaps = 23/363 (6%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTE 515 + ++++D I++ +G I + AV KL G+ P E R + L ++ P + + Sbjct: 259 LADSSNDIISVFGLDGAIEYLSPAVEKLLGFTPAELTGRNVRDIVLPEDYPVTRAAFASY 318 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYSL--TMHDISEWKQEKNKL 571 + D K+ ++ L + + P L + DI+E K + L Sbjct: 319 VRGGDWSAVPRVQYRARHKQGHIVWLEASPRAMLGPDGKIAKLQDVVRDITERKAVEAAL 378 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS----EVIKNQRFGPLGNPRYIEYA 627 A A + KS FLA +SHE+RTPLT+IIGFS EV++++ PR Y+ Sbjct: 379 EDAMVDANAAAEAKSQFLATMSHELRTPLTSIIGFSALLREVVESE------EPR--RYS 430 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I + +L ++ND+LD SK+E+G++ L P S +E + E L+++ A+ K + + Sbjct: 431 QRIWTASQGLLALINDILDHSKLEAGQLELDLAPCSANELMQEVADLLEVQAHAKGLFLT 490 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 +++P +L D ++QI +N+ NA+ FT GG I H + + + V DTG G Sbjct: 491 VDTDDDMPLMLLDEVRMRQILINLAGNAVKFTGDGGVTI--ALHWRGDRLQVTVTDTGPG 548 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 ++ ++ K F Q+ ++ GTGLGL + K +V+ G+ + S+P G++ Sbjct: 549 ISPEGHKRLFKRFSQVDHTTN----GTGLGLMICKQLVELMGGRIGVESSPGNGSMFWFD 604 Query: 808 FPL 810 P+ Sbjct: 605 IPV 607 >gi|313500183|gb|ADR61549.1| GacS [Pseudomonas putida BIRD-1] Length = 917 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 141/237 (59%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y N Sbjct: 271 ELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEM----TPRQLDYLNT 326 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ + + Sbjct: 327 IEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSL 386 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTG 745 + P ++ D +KQI N++SNAI FT G ++ + H ++ + V+DTG Sbjct: 387 IYRDTPASLVGDPLRLKQILTNLVSNAIKFTREGTIVVRAMLEDEHEDCAQLRISVQDTG 446 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 447 IGLSPQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 503 >gi|159901363|ref|YP_001547610.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159894402|gb|ABX07482.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 884 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 102/378 (26%), Positives = 184/378 (48%), Gaps = 46/378 (12%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +IL++ +D + + N + I+ N A + P+++++ + F LE Sbjct: 527 AILQSLNDAVIVFNLDRNIILANAAAESILDRPLDELVTQSFDELLE------------- 573 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 SL+++ + + + + IIIK+ + S+T+ + E+ +L A Sbjct: 574 --SLNIKLPGDPLGAVLNNPDATQTQGIIIKR--ATQSISVTLVPV---MTERGELLGAC 626 Query: 576 KIA-----EKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG--NPRYIEYA 627 I E ES K++F+ VSHE+RTP+T+I G+++++ G LG N E+ Sbjct: 627 LIGRDITREVESDRLKTEFIGTVSHELRTPMTSIKGYTQLLA---MGSLGEVNSTQKEFL 683 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 N I + ++ I+NDLLDI+KIE+G + L + + + +S + + +++ Sbjct: 684 NTIAHNSERMIAIINDLLDITKIETGSVELQMARLMVADVMSSVVGNARAEITQRQQEFS 743 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST---------------THT 732 S A N+P I +D+ ++Q+A N+LSNAI +TP+GG+I + Sbjct: 744 LSLAPNLPTIWSDMERIRQVASNVLSNAIKYTPNGGKISVKAFEINFNDIPNKQREGLQV 803 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + L V+D+GVG+ E EK F + N +I GTGLGL L + ++ G+ Sbjct: 804 GRRYIALAVQDSGVGIDPSEHEKVFDRFYRTENPLKIEAGGTGLGLSLVRPLIQLMGGRI 863 Query: 793 YIFSTPAKGTLIEIIFPL 810 ++ S +GT I P+ Sbjct: 864 WLESAVNQGTTFTFIMPV 881 >gi|192288515|ref|YP_001989120.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192282264|gb|ACE98644.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 837 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 86/276 (31%), Positives = 137/276 (49%), Gaps = 5/276 (1%) Query: 543 IIIKKLPF-SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 + K +P LT DI++ + + L + E K DF+ VS+E+R+PLT Sbjct: 563 LACKTMPLPDGATMLTFQDITDTENVERALRERNEALETADRIKIDFVHHVSYELRSPLT 622 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 IIGF+ + + GPL + EY NYI S N ++ I+N++LD++ I++G M L+ P Sbjct: 623 TIIGFAHFLSDSSTGPL-TEKQAEYVNYITTSTNALMAIINNILDLASIDAGAMTLNLGP 681 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 + + +A+ A +Q +I ++ I + D R V Q+ N+L+NAI F+PS Sbjct: 682 IDIRKAIDAAAEGIQDRLARDQIALQIDVDPAIESFVGDERRVVQVLYNLLANAIDFSPS 741 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 G + + T V V D+G G+ EK F P Q R G GLGL L Sbjct: 742 QGTVRL-TVRRGETRVAFTVTDSGPGIAPAFKEKMFDLFESDP--QGSRHRGAGLGLSLV 798 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 ++ V+ + GK + S +GT + FP+ + H Sbjct: 799 RSFVELHGGKVLVESAVGRGTSVTCEFPIEPAAQRH 834 >gi|39933159|ref|NP_945435.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] gi|39652784|emb|CAE25523.1| sensor histidine kinase with multiple PAS domains [Rhodopseudomonas palustris CGA009] Length = 848 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 86/276 (31%), Positives = 137/276 (49%), Gaps = 5/276 (1%) Query: 543 IIIKKLPF-SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 + K +P LT DI++ + + L + E K DF+ VS+E+R+PLT Sbjct: 574 LACKTMPLPDGATMLTFQDITDTENVERALRERNEALETADRIKIDFVHHVSYELRSPLT 633 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 IIGF+ + + GPL + EY NYI S N ++ I+N++LD++ I++G M L+ P Sbjct: 634 TIIGFAHFLSDSSTGPL-TEKQAEYVNYITTSTNALMAIINNILDLASIDAGAMTLNLGP 692 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 + + +A+ A +Q +I ++ I + D R V Q+ N+L+NAI F+PS Sbjct: 693 IDIRKAIDAAAEGIQDRLARDQIALQIDVDPAIESFVGDERRVVQVLYNLLANAIDFSPS 752 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 G + + T V V D+G G+ EK F P Q R G GLGL L Sbjct: 753 QGTVRL-TVRRGETRVAFTVTDSGPGIAPAFKEKMFDLFESDP--QGSRHRGAGLGLSLV 809 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 ++ V+ + GK + S +GT + FP+ + H Sbjct: 810 RSFVELHGGKVLVESAVGRGTSVTCEFPIEPAAQRH 845 >gi|118579340|ref|YP_900590.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118502050|gb|ABK98532.1| Hpt sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 977 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 129/223 (57%), Gaps = 10/223 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHEIRTP+ ++G +E++ G L N + ++A I SG +L I+ND+ Sbjct: 294 KSEFLANMSHEIRTPMNGVLGMTELL----LGTLLNGKQRQFAETIRNSGEALLAIINDI 349 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703 LD SKIE+GK+ L P + E + +A L A++K + + S ++PR ++ D Sbjct: 350 LDFSKIEAGKIELEKIPFDMHELLCDAAELFASSAHQKGLELLVSIHPDVPRMVVGDPAR 409 Query: 704 VKQIALNILSNAIHFTPSGGQIIIST--THTSNEEVILR--VRDTGVGMTNYELEKAMKP 759 ++Q+ LN+ SNA+ FT G+I+IS + + +++R VRDTG+G++ LEK + Sbjct: 410 LRQVVLNLASNAVKFTDQ-GEIVISADVAESGQDNILIRFLVRDTGIGISPESLEKIFEG 468 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 F Q S R GTGLGL + + + G + STP G+ Sbjct: 469 FAQADGSMTRRYGGTGLGLTIVRQLAGLMGGTTRVESTPDVGS 511 >gi|152987692|ref|YP_001349930.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PA7] gi|150962850|gb|ABR84875.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PA7] Length = 925 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/238 (34%), Positives = 141/238 (59%), Gaps = 10/238 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ +PR +Y + Sbjct: 269 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSEL----SPRQQDYLST 324 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRT 688 I +S +L I+N++LD SKIE+GK+ L P +L + + +A++++ A+EK++ L+ Sbjct: 325 IQKSAESLLGIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSL 384 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--HTSNEEVILR--VRDT 744 + + ++ D + +KQI N++ NAI FT GG + + S++ LR V+DT Sbjct: 385 VYRDTPVQLQGDPQRLKQILTNLVGNAIKFT-QGGTVAVRAMLEDESDDRAQLRISVQDT 443 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G++ + + K F Q NS + GTGLGL ++K +++ G+ + STP +G Sbjct: 444 GIGLSEDDQQALFKAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGA 501 >gi|332524691|ref|ZP_08400890.1| multi-sensor signal transduction histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332107999|gb|EGJ09223.1| multi-sensor signal transduction histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 811 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 100/351 (28%), Positives = 170/351 (48%), Gaps = 14/351 (3%) Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 +A+++RE ++ NRA + G P ED++ K + +L V + E+L + Sbjct: 460 VALMDREAAYVTVNRAWEQQSGIPREDLVGKRASDYLLPAEAEVHERHNREVLERGGSLS 519 Query: 525 LE-KITLGSTKEEKLLSLRIIIKKL---PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 E +++ + + + P +LT DI+E+++ + A+ IAE+ Sbjct: 520 YESEVSQADGTRRTMAVTKAAVTDADGRPRGLIAALT--DITEFREADRTMREARDIAEE 577 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEV--IKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 S KS+F+A +SHE+RTPL AIIGFSE+ ++ + + R I +G +L Sbjct: 578 ASRAKSEFIANISHELRTPLQAIIGFSELGMVRGR-----AHERLASMFGDIHAAGQRML 632 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +VNDLLD+SKIES H E L V E + +R+ + + + Sbjct: 633 ALVNDLLDVSKIESTVGTFHLERTDLRPLVREVAREIDPLLARRRLHLDLALSEGPLVAK 692 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 D +Q+ N+L+NA+ F+P G I + + ++++ VRD G G+ ELEK + Sbjct: 693 VDPMRFQQVVRNVLANAVRFSPDGETITVRGDVDARNQIVVAVRDHGPGIPPGELEKIFE 752 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F Q ++ G GTGLGL + + +V+A+ G + G+ I P Sbjct: 753 AFVQSSKTKDGSG-GTGLGLAICRKIVEAHGGSIQAENADGGGSRFTIAVP 802 >gi|328952020|ref|YP_004369354.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452344|gb|AEB08173.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 1352 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/256 (32%), Positives = 148/256 (57%), Gaps = 10/256 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E K + +L A + ++ K++FLA VSHE+RTPL +I+G+++++ + G + N Sbjct: 835 ELKNKSLELGEANRALKELDRLKTEFLANVSHELRTPLNSILGYTQLLLDGVDGAI-NED 893 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + ++++ N +L ++ND+LD+SK+ +G++ L+ + L E +SEA+ +V+ A K Sbjct: 894 QQKSLLRVEKASNRLLQLINDVLDLSKLRAGRLELNAQKEDLHEILSEALQVVEPLARAK 953 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------ 736 I ++ + +P ++ D + Q+ LN+LSNA+ FT S G I I+ S E Sbjct: 954 EISLKVE-ESEVPPVIVDRDKIIQVLLNLLSNAVKFTDSHGLITINLNTVSLPESHGLIK 1012 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +R+ DTG+G+ +L+ + F QI +S R GTGLGLP+++ +V+ + G+ ++ Sbjct: 1013 DYAAVRISDTGIGIKEDDLQNIFQEFVQIDSSATRRHGGTGLGLPISRHLVEMHGGRIWV 1072 Query: 795 FSTPAKGTLIEIIFPL 810 S KG+ I PL Sbjct: 1073 ESEYGKGSTFTFILPL 1088 >gi|114800094|ref|YP_760221.1| sensor histidine kinase/response regulator [Hyphomonas neptunium ATCC 15444] gi|114740268|gb|ABI78393.1| sensor histidine kinase/response regulator [Hyphomonas neptunium ATCC 15444] Length = 944 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/236 (34%), Positives = 134/236 (56%), Gaps = 8/236 (3%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L+ + AE+ + KS FLA +SHEIRTP+ AI+GF +I +P+ ++ + I Sbjct: 187 LTQRTREAEEANRAKSLFLASMSHEIRTPMNAILGFCHLIARTDL----SPKQKDHVSKI 242 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + +G +L ++ND+LD SK E+GK+ L P + A++ I+LV + A+ KR+ + T Sbjct: 243 NDAGVSLLRLINDILDFSKNEAGKLTLEARPFDVRAAITNQINLVNIDADNKRVKLETRI 302 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTGV 746 + +PR I+ D Q+ LN+LSNA+ FT +G I+ + +S + + L VRD+G+ Sbjct: 303 SPAVPRKIIGDELRFNQVVLNLLSNAVKFTENGTVIVRADVASSQDRDVVLELSVRDSGI 362 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GM + K K F Q +S + GTGLGL + + +V+ G + S +G+ Sbjct: 363 GMDEQQQAKLFKSFSQADSSTTRQFGGTGLGLAICRQIVEQMGGNIRVESKIGEGS 418 >gi|90421906|ref|YP_530276.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] gi|90103920|gb|ABD85957.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] Length = 843 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/255 (33%), Positives = 136/255 (53%), Gaps = 4/255 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT DI++ + + L + E K DF+ VS+E+R+PLT IIGF+ + + Sbjct: 583 LTFQDITDTENVERALRERNEALETADQMKVDFVHHVSYELRSPLTTIIGFAHFLSDPST 642 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GPL + EY +YI S N +L I+N++LD++ I++G M L+ V + +A+++AI + Sbjct: 643 GPL-TEKQEEYLSYITTSTNALLAIINNILDLATIDAGAMTLNLGQVDIRKAIADAIEGI 701 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 Q I++ + A ++ +AD R V Q+ N+L+NA+ F+P I +S T + Sbjct: 702 QDRLARDHIVLEVNAAPDVGHFIADERRVVQVLYNLLANAVGFSPQHAAITLSAKRT-EQ 760 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V+ V DTG G+ EK F N + R G GLGL L ++ V+ + G I Sbjct: 761 TVVFTVTDTGPGIPPDVKEKVFDWFESRSNGSRHR--GAGLGLSLVRSFVELHGGNVRID 818 Query: 796 STPAKGTLIEIIFPL 810 S KGT + FP+ Sbjct: 819 SVVGKGTTLTCSFPI 833 >gi|91793039|ref|YP_562690.1| CHASE [Shewanella denitrificans OS217] gi|91715041|gb|ABE54967.1| CHASE [Shewanella denitrificans OS217] Length = 1659 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 147/260 (56%), Gaps = 10/260 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E ++ ++ L AK+ A+ S+ KS FLA +SHEIRTP+ AI+G +++++ Sbjct: 875 DITEQRELEHTLRRAKEEADATSAAKSAFLANMSHEIRTPMNAILGMLQLVQHTDM---- 930 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P+ +Y + + + +L ++ND+LD SKI++GK+N+ P SL+E + E L+ Sbjct: 931 TPQQQDYVSKTEVAAQSLLGLLNDILDFSKIDAGKLNVDLHPCSLEEIMRELAVLLAANM 990 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEV 737 K I + +IP +LAD + ++Q+ LN+ NAI FT G I+ + S+ +V Sbjct: 991 RRKHIEVLFDLDPSIPELVLADKQRLQQVLLNLAGNAIKFTAQGHVILQVFNLKLSSHKV 1050 Query: 738 ILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 LR V DTG+G+ +L+K + F Q +S R GTGLGL + K +V+ + + Sbjct: 1051 RLRISVADTGIGINVSQLDKIFQGFMQAESSTSRRFGGTGLGLAITKRLVELMGAELEVE 1110 Query: 796 STPAKGT--LIEIIFPLYDT 813 S +G+ +I F L +T Sbjct: 1111 SQEGQGSRFWFDIEFELVET 1130 >gi|239907183|ref|YP_002953924.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797049|dbj|BAH76038.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 624 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 95/355 (26%), Positives = 167/355 (47%), Gaps = 37/355 (10%) Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 T D + +++R+GIIL S +G P + P + L + Sbjct: 20 TGDALLLVDRDGIILHATALASCFYGLPAPQLTGLPLGLALNDSAA-------------- 65 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIA 578 +I L +T L+ + LP S + + D++ + K KL A++ A Sbjct: 66 -----REICLPATGRPALVRW----EPLPGHGHSLRRVLLRDLTPLRAAKTKLEEAREAA 116 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 + KS FLA ++HEIRTP+ I+G +E+ +P+ EY S +L Sbjct: 117 KAGERAKSHFLANITHEIRTPMIGILGMTELAMATEL----SPKQREYLEMARHSAQSLL 172 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++ND++D ++IE+G L P SL E V E IS+ + A +K + + +P+ L Sbjct: 173 TVLNDIVDYARIETGAFELARTPFSLRETVEEVISVFRPLAAKKGLSLTYRCIGAVPQTL 232 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVILR--VRDTGVGMTNY 751 D ++Q+ +N++ NA+ FT G ++++ +N++ LR VRDTG+G+ Sbjct: 233 VGDPSRLRQVLINLVGNAVKFT-DAGSVVLAVARIGGGQANDQTRLRFEVRDTGIGIPGD 291 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 +++ F Q S R +G GLGL + + +V+ G + + S KG++ I Sbjct: 292 KIKAIFDSFTQADVSPARRYQGAGLGLAIVRQLVEMMQGSYNVASEEGKGSVFTI 346 >gi|163794230|ref|ZP_02188202.1| periplasmic sensor signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159180398|gb|EDP64919.1| periplasmic sensor signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 559 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/239 (33%), Positives = 130/239 (54%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 ++ A + AE + KS FLA +SHE+RTPLTAIIGFS+++K Q R EYA Sbjct: 311 QVRSALQSAEHATRAKSSFLAGISHELRTPLTAIIGFSQILKIQHRPGKTKSREQEYAEI 370 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I S +L++VND+LD+SKIESG L + L + +L+ A+ + I + Sbjct: 371 IHDSSQHLLNLVNDILDLSKIESGSYELDETWIDLVREANAVRALLAHEASRRGIAVSLD 430 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 + +P + D++ ++QI +N++SNA+ FT GG + +S S+ ++L + D G G+ Sbjct: 431 LQDQLPALYGDIKGIRQIVINLVSNALKFTDRGGWVRLSMRVESDGGLLLEISDNGAGIP 490 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 E + F + N EG GLGL L K + + + + + ST +GT + + F Sbjct: 491 TDEQSSIWEAFKRARNPGLSTAEGAGLGLHLVKILANLHDAEVGLESTLGQGTRVWVAF 549 >gi|119493069|ref|ZP_01623994.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] gi|119452814|gb|EAW33989.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] Length = 1727 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 86/256 (33%), Positives = 139/256 (54%), Gaps = 31/256 (12%) Query: 567 EKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 +KNK L A+ AE S KS+FLA +SHEIRTP+ A+IG + ++ + NP + Sbjct: 968 DKNKALEEARLAAEIASRAKSEFLATMSHEIRTPMNAVIGMTGLLLDMNL----NPEQRD 1023 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + I SG+ +L I+ND+LD SKIESGK+ L +P L + E++ L+ A+EK + Sbjct: 1024 FVETIRTSGDALLTIINDILDFSKIESGKLELEHQPFKLRTCIEESLDLLSARASEKGLE 1083 Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT------------ 732 + N P ++ D+ ++Q+ +N+LSNA+ FT + G++I+S T + Sbjct: 1084 LAYIVDPNTPEVMVGDVTRLRQVLVNLLSNAVKFT-NQGEVIVSVTSSLIQDSAQSLISS 1142 Query: 733 --SNE----------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 NE EV V+DTG+G+ + + K F Q+ S + GTGLGL + Sbjct: 1143 EEKNESQPSISPPIYEVQFAVKDTGIGIPPDRMHRLFKAFSQVDASTTRQYGGTGLGLAI 1202 Query: 781 AKAMVDANMGKFYIFS 796 ++ + + GK ++ S Sbjct: 1203 SQRLSEMMGGKMWVVS 1218 >gi|150017029|ref|YP_001309283.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149903494|gb|ABR34327.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 1083 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 87/242 (35%), Positives = 127/242 (52%), Gaps = 8/242 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ N+L AK+ AE + KS FLA +SHEIRTPL I+GF +++ Sbjct: 427 KERTNELIIAKEAAEDANMAKSQFLANMSHEIRTPLNGIVGFLSILEKTDLDSTQQ---- 482 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +Y I S +L ++ND+LDISKIE+G+M + + + I L A EK + Sbjct: 483 DYIETIQTSSETLLVVINDILDISKIEAGRMEIEKVAFDIRSVIESTIFLYDAKAREKGL 542 Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVIL--R 740 + + IP L D ++QI N++SNA+ FT +G I +S +N EV L Sbjct: 543 ELNMLINSAIPSCLVGDPTKIRQIISNLVSNAVKFTHNGEVFIEVSVIKETNTEVQLYFE 602 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 +RDTG+GM E+ K KPF Q +S + GTGLGL + K +V+ G + S + Sbjct: 603 IRDTGIGMNEEEISKLFKPFSQADSSSTRKYGGTGLGLAICKKIVEMMGGTISVKSVKNR 662 Query: 801 GT 802 GT Sbjct: 663 GT 664 >gi|91224013|ref|ZP_01259276.1| hypothetical protein V12G01_01980 [Vibrio alginolyticus 12G01] gi|91190924|gb|EAS77190.1| hypothetical protein V12G01_01980 [Vibrio alginolyticus 12G01] Length = 878 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 86/254 (33%), Positives = 133/254 (52%), Gaps = 17/254 (6%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + E +++ ++ HAK+ A + KS FLA +SHEIRTPL I+G +E++ + Sbjct: 355 VEEMQRQTEEILHAKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSEL----S 410 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 E + ID S +L ++ND+LD+SKIESG++ L + E V +++ L Q A Sbjct: 411 SHQQEVVDDIDSSSQTLLTLLNDILDLSKIESGRLELSLVEADIREVVYQSMILFQSKAT 470 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI- 738 K++ + + A NIP R++ D VKQ+ N++SNA+ FT SG + S EE++ Sbjct: 471 SKQLKLGINLAENIPIRVMVDDHRVKQVVTNLVSNAVKFTESGHVCV----DVSYEELLE 526 Query: 739 -------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 +V DTG+G+ +L +PF Q + GTGLGL + +V GK Sbjct: 527 KERGVLTFKVEDTGIGIDQDKLTTIFEPFTQEDEGVSRQFGGTGLGLAICCQLVSMMGGK 586 Query: 792 FYIFSTPAKGTLIE 805 ST GT E Sbjct: 587 LVATSTKGVGTCFE 600 >gi|22298442|ref|NP_681689.1| two-component sensor histidine kinase [Thermosynechococcus elongatus BP-1] gi|22294622|dbj|BAC08451.1| two-component sensor histidine kinase [Thermosynechococcus elongatus BP-1] Length = 729 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 87/267 (32%), Positives = 144/267 (53%), Gaps = 12/267 (4%) Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKK--IAEKESSH--KSDFLARVSHEIRTPLTAIIGF 606 + YS + +Q N+ + A + ++ E++H K+DFLA +SHE+RTPLT +IG Sbjct: 322 AQLYSELQQQKATLEQRVNERTQALREALSAMEAAHRIKNDFLATMSHELRTPLTCVIGV 381 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 S + GPL + EY I SG +L+++N +LD+S+ E G+ LH S+ + Sbjct: 382 SATLLRWPLGPL-TAKQREYLEIIHESGTHLLELINSILDLSEAELGRSQLHRSAFSIRQ 440 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIP----RILADLRSVKQIALNILSNAIHFTPSG 722 ++ + +V+ A+ ++ +R IP R D R ++QI +N+LSNAI FTP+ Sbjct: 441 LCADCLEVVKPQAHRHQVNLRHQLM--IPPTRDRFWGDYRRIQQILINLLSNAIKFTPAM 498 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 G++I+ +E+I +V+DTG+G+ + + F Q+ +S G GLGL L K Sbjct: 499 GEVILRAWW-KEDELIFQVQDTGIGIPAHLQSLLFQKFQQLDSSFGRAYTGAGLGLALTK 557 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 VD + G + ST KG+ + P Sbjct: 558 QWVDLHHGWIDVDSTEGKGSTFTVGLP 584 >gi|207739510|ref|YP_002257903.1| composite two-component transcriptional regulatory protein (sensor histidine kinase and response regulator hybrid) [Ralstonia solanacearum IPO1609] gi|206592889|emb|CAQ59795.1| composite two-component transcriptional regulatory protein (sensor histidine kinase and response regulator hybrid) [Ralstonia solanacearum IPO1609] Length = 675 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 89/259 (34%), Positives = 139/259 (53%), Gaps = 13/259 (5%) Query: 560 DISEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 DI+E +Q + + S A++ AE+ S K DFLA VSHE+RTPL A++G+++++ Sbjct: 266 DITEHRQTEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLAM 325 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + P + I+RS + +++DLLD+S I SGK+ L PV L + + A Sbjct: 326 R---PYDEAMFRRGLEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERAR 382 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 ++ A +K+I I T + +P + D +KQ+ N+L+NA+ FTP GG I + Sbjct: 383 ETIEPMARQKQIAIDTEY-PPVPLLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVC-VQA 440 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 S E ++ VRDTG+G+ L F Q S R G GLGL +AK +V+ + G+ Sbjct: 441 SPEGLVATVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRI 500 Query: 793 YIFSTPAK-GTLIEIIFPL 810 S A GT + + PL Sbjct: 501 TAASNGANLGTTMAVTLPL 519 >gi|126738369|ref|ZP_01754090.1| sensor histidine kinase/response regulator [Roseobacter sp. SK209-2-6] gi|126720866|gb|EBA17571.1| sensor histidine kinase/response regulator [Roseobacter sp. SK209-2-6] Length = 764 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 107/389 (27%), Positives = 190/389 (48%), Gaps = 43/389 (11%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 K+E +L ++A DG A + + ++ N A +F LE+ T Sbjct: 73 KIEKAERRLWHSIQAFQDGFAFFDADSKLIGANTAYLNIFDG-------------LEEVT 119 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKE---EKLLS---------------LRIIIKK 547 P + + +IL+ + +I+ S ++ ++ +S LR+I +K Sbjct: 120 PGISYVRILQILTDEGLVNTGEISPDSWRKMMTDRWMSLAPEPIVVQMWDDRYLRLIDQK 179 Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 SL + DI+ + +L A++ AE + KS FLA +SHEIRTP+ ++G + Sbjct: 180 GHGGDMVSLAL-DITSTVHYEEELRSARERAEAANRAKSAFLANMSHEIRTPMNGVVGMA 238 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 E++ + + YAN I SG +L I+ND+LD SKIE+ KM LH EP L+ A Sbjct: 239 ELLSDTSL----SEEQKLYANTIKNSGEALLVIINDVLDYSKIEADKMVLHEEPFDLERA 294 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII 726 + E + L+Q A +K + + + +P R + D ++Q+ N+ NA+ FT + G + Sbjct: 295 IHEIVMLLQPTARDKGLTMLVDYDLFLPTRFVGDRGRIRQVMTNLAGNAVKFT-NEGHVT 353 Query: 727 ISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 + T SN + V + DTG+G+ +++ F Q+ + + + EGTGLGL ++ Sbjct: 354 LRVTGISNPDEGTCSVHCLIEDTGIGIPADKVDHVFGEFNQVEDERNRKFEGTGLGLAIS 413 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 K +++ G+ ++ S +G+ PL Sbjct: 414 KKLIELMDGEIWVESDEGEGSCFGFRIPL 442 >gi|27375770|ref|NP_767299.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27348908|dbj|BAC45924.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 743 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 127/253 (50%), Gaps = 5/253 (1%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D+++ + + LS A+ A+ + KS FLA SHEIRTPL IIG ++ + Sbjct: 210 RDVTDRTETERALSDARDQADAANRAKSRFLAMASHEIRTPLNGIIGMGGLLLDTTL--- 266 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P YA + SG ++ ++ +LLD SKIE+GK++L P +L + E L+ Sbjct: 267 -TPEQATYAKAVKTSGEALMALIEELLDYSKIEAGKLDLEQRPFALSTLIEEITELLAPR 325 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A K + I +P ++ D ++Q+ LN+ NAI FT SGG +I E+ Sbjct: 326 AQAKTLEIAAYVDERLPLEVVGDAARLRQVLLNLAGNAIKFTASGGVALIVEPGIRPNEI 385 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 VRDTG+G+ ++ + F Q GTGLGL +++ +V G+ + S Sbjct: 386 SFLVRDTGIGIAAEAQQRIFREFEQADERVARTYGGTGLGLAISERIVKRMGGRITLASE 445 Query: 798 PAKGTLIEIIFPL 810 P KG+ E+ PL Sbjct: 446 PGKGSTFEVAVPL 458 >gi|288962258|ref|YP_003452553.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288914524|dbj|BAI76009.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1135 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 97/361 (26%), Positives = 179/361 (49%), Gaps = 20/361 (5%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++ EA I I+ G + + NRA +LFGY +++ P T + +V + L Sbjct: 455 AMFEAVGQPIVTIDEHGTVDAFNRAAERLFGYRAAEVVGGPMTRLMPSAVGAVHDGLLAT 514 Query: 516 ILSLDLRQTLEKITL----GSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKN 569 D ++ ++ + G K+ L + +T + D++ ++ + Sbjct: 515 YREGDGEGSIPRVGMRELTGRRKDGGEFPLEATLAGWREGDRRYVTGALRDVTVQREIEA 574 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 L AK+ A++ + K +FLA +SHEIRTP+ ++G +++ GP N + + Sbjct: 575 SLRRAKEAADQANRAKGEFLATMSHEIRTPMNGVLGALALVE----GPNLNDEQRQLLDV 630 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV--SLDEAVSEAISLVQLYANEKRILIR 687 +RSGN +L I++D+LD+SK+E+GK + EPV L + ++I L++ A + + + Sbjct: 631 ANRSGNALLQIIDDILDLSKLEAGKAEV--EPVDFELRAVLRDSIDLLEPAACGRGLFLT 688 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILR--V 741 +P + ADLR ++Q+ +N++ NA+ FT GG ++ + ++ +LR V Sbjct: 689 QEVEPAVPDHVRADLRRIRQVLVNLVGNALKFTNRGGVAVRVGLEGDAVADGSFLLRFEV 748 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ + F Q +S R GTGLGL +++ +V G + S KG Sbjct: 749 ADTGIGIPEEVQPTLFRRFTQADSSTTRRFGGTGLGLAISRELVTLMGGTIGVASAEGKG 808 Query: 802 T 802 + Sbjct: 809 S 809 >gi|56420003|ref|YP_147321.1| hypothetical protein GK1468 [Geobacillus kaustophilus HTA426] gi|56379845|dbj|BAD75753.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 542 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 84/262 (32%), Positives = 148/262 (56%), Gaps = 12/262 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K + ++ AK+ AEK + KS+ ++R+SHEIRTPL ++GF+++++ P Sbjct: 146 DITERKMMEQEMLRAKEEAEKANQAKSNLISRMSHEIRTPLNGVLGFAQLLE---MDPSL 202 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R E+ I +L+++N++LD+++IE+G++ L ++ V D+ + E+I LV+ A Sbjct: 203 KGRQREFVQEILGGARHLLNLINEMLDLARIETGRLPLTYDVVHPDDIIKESIKLVEPLA 262 Query: 680 NEKRILI--RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 N+K I I R+SF+ + + D V+Q+ LN+L NAI + GG ++I + E+V Sbjct: 263 NKKNIDIQARSSFSEQV-YLYTDATRVRQVLLNLLDNAIKYNRDGGTVLIEGKY-DQEKV 320 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 ++ V+D G+G+ + E E +PF +I + +G G+GL K ++ G + S Sbjct: 321 VIHVKDNGIGIPDEEQENIFEPFYRIKGTHV---DGNGIGLAFVKQIIRLLGGTIEVKSK 377 Query: 798 PAKGTLIEIIFPL--YDTSHPH 817 G+ P Y S PH Sbjct: 378 LGVGSDFSFSLPAVSYFHSWPH 399 >gi|269966413|ref|ZP_06180498.1| hypothetical protein VMC_19280 [Vibrio alginolyticus 40B] gi|269829000|gb|EEZ83249.1| hypothetical protein VMC_19280 [Vibrio alginolyticus 40B] Length = 726 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 133/251 (52%), Gaps = 11/251 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + E +++ ++ HAK+ A + KS FLA +SHEIRTPL I+G +E++ + Sbjct: 355 VEEMQRQTEEILHAKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSEL----S 410 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 E + ID S +L ++ND+LD+SKIESG++ L + E V +++ L Q A Sbjct: 411 SHQQEVVDDIDSSSQTLLTLLNDILDLSKIESGRLELSLVEADIREVVYQSMILFQSKAT 470 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 K++ + + A NIP R++ D VKQ+ N++SNA+ FT S G + + ++ E Sbjct: 471 SKQLKLGINLAENIPIRVMVDDHRVKQVVTNLVSNAVKFTES-GHVCVDVSYEELPEKER 529 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + +V DTG+G+ +L +PF Q + GTGLGL + +V GK Sbjct: 530 GVLTFKVEDTGIGIDQDKLTTIFEPFTQEDEGVSRQFGGTGLGLAICCQLVSMMGGKLVA 589 Query: 795 FSTPAKGTLIE 805 ST GT E Sbjct: 590 TSTKGVGTCFE 600 >gi|21426070|gb|AAM52311.1|AF502252_1 sensor kinase [Pseudomonas chlororaphis] Length = 917 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 141/237 (59%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQLDYLGT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRT 688 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ Sbjct: 326 IEKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTG 745 + + ++ D +KQI N++SNAI FT G + ++ H + ++ + + DTG Sbjct: 386 VYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISIHDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++N ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 446 IGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|299069582|emb|CBJ40854.1| sensory histidine kinase in two-component regulatory system [Ralstonia solanacearum CMR15] Length = 676 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 87/260 (33%), Positives = 141/260 (54%), Gaps = 13/260 (5%) Query: 560 DISEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 DI+E +Q + + S A++ AE+ S K DFLA VSHE+RTPL A++G+++++ Sbjct: 267 DITEHRQAEARRALLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLAM 326 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + P + I+RS + +++DLLD+S I SGK+ L PV L + + A Sbjct: 327 R---PYDEAMFRRGLEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERAR 383 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 ++ A +K+I + T + +P + D +KQ+ N+L+NA+ FTP GG + I T Sbjct: 384 ETIEPMARQKQITVDTEYL-PVPLLQGDAGRLKQVFWNLLANAVKFTPEGGHVRI-TVQA 441 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + ++ VRDTG+G+ L F Q S R G GLGL +AK +V+ + G+ Sbjct: 442 GADGLVATVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRI 501 Query: 793 YIFSTPAK-GTLIEIIFPLY 811 S+ A GT + + PL+ Sbjct: 502 TAASSGADLGTTMAVTLPLH 521 >gi|88858180|ref|ZP_01132822.1| sensor protein barA [Pseudoalteromonas tunicata D2] gi|88819797|gb|EAR29610.1| sensor protein barA [Pseudoalteromonas tunicata D2] Length = 925 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 143/246 (58%), Gaps = 8/246 (3%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + +++ + +L+ AKK A+ + KSDFLA++SHE+RTPL ++GF+ Q + N Sbjct: 265 LEQYETQNIQLNIAKKEAQDANRVKSDFLAKMSHELRTPLNGVVGFTR----QLYKTPLN 320 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 +Y + I+ S N +L I+ND+LD SK+E+G M L L + V+E ++L+ A+ Sbjct: 321 KHQKDYLDTIELSANSLLAIINDILDFSKLEAGAMELESIHFQLRDTVNEVLTLLAPSAH 380 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEE-- 736 +K + + + +N+P ++ D KQI +N++SNAI FT SG +I + H +N+ Sbjct: 381 DKNLELSINIHDNVPDSLIGDPTRFKQILINLISNAIKFTESGHVLIDVDCRHYANQRTS 440 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + + D+G+G++ + + FGQ +S + GTGLGL + K +V+A G + S Sbjct: 441 IFVAINDSGIGISANKQDALFSAFGQADSSITRKFGGTGLGLIITKHLVEAMGGHISLNS 500 Query: 797 TPAKGT 802 KG+ Sbjct: 501 AVGKGS 506 >gi|124266570|ref|YP_001020574.1| Cache sensor hybrid histidine kinase [Methylibium petroleiphilum PM1] gi|124259345|gb|ABM94339.1| Cache sensor hybrid histidine kinase [Methylibium petroleiphilum PM1] Length = 731 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 135/245 (55%), Gaps = 6/245 (2%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK+ A + + KS FLA +SHEIRTPL ++GF+++ P P + I Sbjct: 326 LQEAKEQAVRANDSKSLFLANISHEIRTPLNGVLGFAQIGYRD---PSVVPEARQKFARI 382 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG L+ I+ND+LD+SKIE+GK+ L P L A+ A+ LV+ +A +K I + Sbjct: 383 LESGKLLQGILNDVLDMSKIEAGKLLLDPTPTMLRPALERAVDLVRGFARDKGIALCLMV 442 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 +P I+ D + QI LN+LSNA+ FT SG Q+ + T S +++++ VRD+G+GM+ Sbjct: 443 DRRVPEVIVVDPLRLGQILLNLLSNAVKFTASG-QVDV-TVGVSGDKLVINVRDSGLGMS 500 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ + F Q S R GTGLGL + K +V+ G + S G+ I P Sbjct: 501 EEQISRLFMAFEQADRSTTRRYGGTGLGLAITKRLVEMMNGSIVVTSHLGAGSTFSIRLP 560 Query: 810 LYDTS 814 L ++ Sbjct: 561 LARST 565 >gi|328470886|gb|EGF41797.1| putative sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus 10329] Length = 873 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 114/390 (29%), Positives = 186/390 (47%), Gaps = 40/390 (10%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE---- 502 + ++ QL + E D I I + +G I N A +L Y +E+++ K L+ Sbjct: 234 LSAKISQLAEVAEHARDTIIITHPDGTIAWVNSAFEQLTEYSLEEVVGKSPGELLQGEDT 293 Query: 503 -QNTPSVMNHYL-------TEILSL--DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 NT ++++ + EIL+ R ++ L +E LR I + Sbjct: 294 DANTVALLSQSVRSHSPVRVEILNYTKSRRPYWVELELSPVFDENGELLRFIAVE----- 348 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-- 610 DI++ ++ + +LS A ++K + KS+FLA +SHEIRTP+ AI+G SE++ Sbjct: 349 ------RDITDRREMEKRLSSALDKSKKATQAKSEFLANMSHEIRTPMNAIMGISEILLE 402 Query: 611 -KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 +N+R PR E + +S N ++ I+ND+LD SK+E+GK+ L E L V Sbjct: 403 NENRR-----EPR--ELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVE 455 Query: 670 EAISLVQLYANEK--RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 +L A++K ++L+ A N ++ D + QI LN++ NA+ FT G ++ Sbjct: 456 SCTALCAYQADKKNLKLLVDMPLAMNTV-VVGDKGRINQILLNLIGNAVKFTDEGH--VL 512 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 S V DTG+G+ L M F Q+ S R EGTGLGL ++K ++ Sbjct: 513 LKVRESEHGFDFSVSDTGIGIPEDRLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISM 572 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 G+ + S KG+ L S PH Sbjct: 573 YNGELCVHSDFGKGSCFSFSLQLPKRSQPH 602 >gi|296123006|ref|YP_003630784.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] gi|296015346|gb|ADG68585.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] Length = 1135 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/248 (32%), Positives = 139/248 (56%), Gaps = 8/248 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ K + L AK AE + KSDFLA +SHEIRTPL AIIG +E++ + Sbjct: 403 RDITPMKLAEQALREAKDAAEAANRAKSDFLANMSHEIRTPLNAIIGMTELVMDTDLKVA 462 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 +Y + SG +L I+ND+LD SKIE+G++++ +P L +++ + + + Sbjct: 463 QR----DYLRMVLESGESLLGIINDILDFSKIEAGRLHVDEQPFRLRDSLGDTMKSLSNR 518 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEE 736 A+ K++ + + ++P + D V+Q+ +N+L NA+ FT G ++ +S + E+ Sbjct: 519 AHRKKLELAFHVSPDVPDEVRGDAVRVRQVIINLLGNALKFTERGEVVLDVSVESRTAEQ 578 Query: 737 VIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V L +V+DTG+G+ + E + F Q +S R GTGLGL ++ +V+ GK ++ Sbjct: 579 VTLHFKVQDTGIGIAKDKFESIFEAFEQADSSTTRRYGGTGLGLAISARLVELMQGKIWV 638 Query: 795 FSTPAKGT 802 S +G+ Sbjct: 639 ESEVGQGS 646 >gi|171913995|ref|ZP_02929465.1| Signal transduction histidine kinase [Verrucomicrobium spinosum DSM 4136] Length = 702 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 137/255 (53%), Gaps = 10/255 (3%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + +L+ AK AE+ KS FLA +SHEIRTP+ AI+GFSE++ N+ + + Sbjct: 194 RREERLAAAKVRAEQSEKEKSIFLATMSHEIRTPMNAILGFSELLANE----AQSEQEKR 249 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 +A I SG +L I+ND+LD+SKIE+G + + +P + + V + A E+ + Sbjct: 250 HAETILVSGRALLQIINDILDLSKIEAGMLQISSDPCDVRDVVRFVQQMFARQAIERGLE 309 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII-----STTHTSNEEVIL 739 + + ++P +L D ++QI +N++ N++ FT GG + T H S + + Sbjct: 310 LHAEISPSVPNSLLIDSIRLRQILVNVVGNSLKFTERGGVTVRLHGERGTEHRSRMLLTV 369 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ + +PF Q+ + + GTGLGL + K + D G+ + S P Sbjct: 370 EVEDTGIGIPREMQAEVFRPFVQVNGGTKSQTRGTGLGLAIVKRLSDLMGGRILLDSQPG 429 Query: 800 KGTLIEIIFPLYDTS 814 +GTL FP + S Sbjct: 430 RGTLFRFEFPHVEIS 444 >gi|88859369|ref|ZP_01134009.1| sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain [Pseudoalteromonas tunicata D2] gi|88818386|gb|EAR28201.1| sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain [Pseudoalteromonas tunicata D2] Length = 901 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 122/397 (30%), Positives = 197/397 (49%), Gaps = 32/397 (8%) Query: 438 VDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 ++ ++ +R EI + L ILEA+S I + +GII N A K+ GY V +++ K Sbjct: 370 LEEQVEQRASEIANINLLQKRILEASSYAIITTDIKGIITLINPAGEKMLGYSVNELVGK 429 Query: 496 --PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE----KITLGST---------KEEKLLS 540 P +F + L++ L + E K +G KE K Sbjct: 430 LNP-GIFHLPDEIMTRAQALSDELGTQIEPGFEVFVAKARIGQQDINRWTYVHKEGKQFQ 488 Query: 541 LRIIIKKL--PFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 +++ I L F+ D++E + + L+HAK AEK KS+FLA +SHEI Sbjct: 489 VKLSINSLYNEFNELVGFLGIASDLTEQLKREQALAHAKDRAEKAVKVKSEFLANMSHEI 548 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTP+ + G +++K + G ++ A Y + NL + I+ND+LD SKIE+GK+ Sbjct: 549 RTPMNGLFGVMQLLKQENLSSDGK-NLLDKALY--SAKNLTV-IINDILDFSKIEAGKLT 604 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSN 714 L L E + S + + A K+I +F N+ D ++QI LNI+SN Sbjct: 605 LELTNFKLSELIEHINSDLSVNAFNKQI--DLTFEINVKHDFWFGDPIRIRQILLNIISN 662 Query: 715 AIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 AI FT +GG +++++ TSN + + V DTG+G+ +E+ F Q S + G Sbjct: 663 AIKFTNTGGVKVLVNALPTSN-GLQISVIDTGIGIAPDAIERLFNRFEQADKSTTRKYGG 721 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 TGLGL ++++++D G+ + S KGT I+ PL Sbjct: 722 TGLGLSISQSLIDLMQGEISVTSEENKGTSFSIMIPL 758 >gi|310830266|ref|YP_003965366.1| multi-sensor hybrid histidine kinase [Ketogulonicigenium vulgare Y25] gi|308753172|gb|ADO44315.1| multi-sensor hybrid histidine kinase [Ketogulonicigenium vulgare Y25] Length = 715 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/260 (30%), Positives = 149/260 (57%), Gaps = 9/260 (3%) Query: 562 SEWKQEKNKLSHAKK-IAE------KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 S+ +++++ L+ +++ +A+ +ES +KS+F+A +SHE+RTPL A++ + ++ R Sbjct: 20 SQLEEQRDALAASRQQLADQAGDLARESRYKSEFVANMSHELRTPLNALLIMARLLSENR 79 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 L +P I++A I+ SG +L ++ND+LD+S+IE+GK+++ E + + + Sbjct: 80 PHNL-SPEQIQWAETIESSGRDLLGLINDILDLSRIEAGKVDVDPEVTQPKDVAARMMRA 138 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 + A+E + + + A+++P I D+ ++QI N LSNA+ FT G + +S + Sbjct: 139 FAVQASESGLKLVSEVADDVPEITTDVGKLEQILRNFLSNALKFTQK-GSVTLSVARSGA 197 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E V V+DTG+G+ + + + F Q S R GTGLGL +++ + G + Sbjct: 198 ETVTFSVKDTGIGIAAEQHDAVFEAFRQADGSISRRFGGTGLGLSISRDLAGILGGDVML 257 Query: 795 FSTPAKGTLIEIIFPLYDTS 814 STP KG+ + PL+ T+ Sbjct: 258 ESTPGKGSTFILTLPLHLTA 277 >gi|75909673|ref|YP_323969.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75703398|gb|ABA23074.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 865 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 108/359 (30%), Positives = 187/359 (52%), Gaps = 24/359 (6%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQNTPSVMNHY-- 512 + E+ G+A N +G I N A ++ GY E D L K + + TP H Sbjct: 357 LFESNLIGVAFWNVDGFITDANDAYLQIVGYTREEFDTLGK---INWRELTPPDCEHLDT 413 Query: 513 --LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISEWK---Q 566 + E+ + + + EK + + + +S+ + I L S + + DISE K Q Sbjct: 414 RAIAEVKANGISRIYEKQYI--QRNGRRVSIVLGIALLDDSDEQGVAFVLDISERKLAEQ 471 Query: 567 EKNKLSHAKKIAEKESSH----KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 ++++L A++IA K++ K +FLA +SHE+RTPL I+G+S+++++++F R Sbjct: 472 QRDRLLCAERIARKDAEIANRIKDEFLAVLSHELRTPLNPILGWSKLLRSRQFDAATTDR 531 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +E I+R+ L ++ DLLD+S+I GK++L+ PVSL + AI V+L A K Sbjct: 532 ALET---IERNATLQTQLIEDLLDVSRILQGKLSLNVCPVSLPIVIGAAIDTVRLAAEAK 588 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 I I+ F + +++ D ++Q+ N+LSNA+ FT GG + I N++ ++V Sbjct: 589 EIKIQNVFDPELGQVMGDANRLQQVVWNLLSNAVKFTSPGGTVEIHLKAV-NDQAQIQVI 647 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG G+T L F Q + + G GLGL + + +V+ + G ++P +G Sbjct: 648 DTGKGITPEFLPYVFDYFRQADGTTTRKFGGLGLGLAIVRQVVELHGGTVQA-TSPGEG 705 >gi|121998930|ref|YP_001003717.1| Hpt sensor hybrid histidine kinase [Halorhodospira halophila SL1] gi|121590335|gb|ABM62915.1| Hpt sensor hybrid histidine kinase [Halorhodospira halophila SL1] Length = 963 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/240 (35%), Positives = 135/240 (56%), Gaps = 10/240 (4%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L A++ AE+ + KS+FLA +SHEIRTP+ A++G S+++ + N R ++Y Sbjct: 376 RRLKRARQQAEQATRAKSEFLANMSHEIRTPMNAVVGLSQLLLDTEL----NERQLDYLK 431 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I RS ++L I+ND+LD S+IESG++ L P L E + +L A EK I + Sbjct: 432 KIQRSSRMLLGIINDILDFSRIESGQLELDTGPFDLGEVIDHLATLFSEAAREKEIELIY 491 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST-----THTSNEEVILRVR 742 + +PR+L D + Q+ N+LSNAI FTP GG + + ++ + +VR Sbjct: 492 AIQPELPRMLVGDSLRITQVLTNLLSNAIKFTPRGGTVELEVREEAGAGSAAANIRFQVR 551 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D+G+GM +LE+ +PF Q S R GTGLGL + + +V+ G + S P +G+ Sbjct: 552 DSGIGMDAEQLERVFQPFVQADASTTRRYGGTGLGLGIGRRLVERMGGDLEVTSQPGQGS 611 >gi|329847837|ref|ZP_08262865.1| sensory box protein [Asticcacaulis biprosthecum C19] gi|328842900|gb|EGF92469.1| sensory box protein [Asticcacaulis biprosthecum C19] Length = 656 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 106/368 (28%), Positives = 185/368 (50%), Gaps = 31/368 (8%) Query: 457 ILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++E D GI ++ +G++ S N ++ G+ ++IL K F++F Q T + H +E Sbjct: 284 VVEEVRDYGIFALDPDGVVTSWNLGAERIKGWSSQEILGKHFSMFYPQETQT---HLPSE 340 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLR---------IIIKKL---PFSSC-YSLTMHDIS 562 +L E+ T E++ LR +II L C ++ D++ Sbjct: 341 ML--------ERARQAGTAEDEGWRLRKDGSRFWANVIITVLHDDRGEVCGFAKVTRDMT 392 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ + L A++ A + KS+FL+R SHE+RTP++AI+GF ++++ L P Sbjct: 393 ERRRAEEALKDAREEAIAANLAKSEFLSRTSHELRTPMSAILGFGQLLELDE-NTLA-PH 450 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ-LYANE 681 I +G +L ++NDLLDIS IE+G L + V + +A+ E +LV + A Sbjct: 451 QRAAVEQIMMAGRHLLSLINDLLDISSIEAGGAELVIQDVDVADAIYEVQTLVAPIVAGA 510 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 L+ + + + AD R + QI LN ++NA + S GQ + + ++ V + V Sbjct: 511 GLTLVVRDMTSGLT-VSADRRRLIQILLNFIANAAKYHRS-GQFVFVSARMEDDHVRIEV 568 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D G G+ + + PF ++ ++ + EGTGLGL L+K +V++ G+ + TPAKG Sbjct: 569 EDDGDGIDKAAVSRLFTPFDRLGQPKRSKTEGTGLGLALSKRLVESMTGQIG-YETPAKG 627 Query: 802 TLIEIIFP 809 P Sbjct: 628 ARFWFTLP 635 >gi|313674944|ref|YP_004052940.1| multi-sensor hybrid histidine kinase [Marivirga tractuosa DSM 4126] gi|312941642|gb|ADR20832.1| multi-sensor hybrid histidine kinase [Marivirga tractuosa DSM 4126] Length = 1092 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 134/247 (54%), Gaps = 6/247 (2%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI++ KQ +L HAK +AE K FLA +SHEIRTP+ +IG +++ + Sbjct: 561 RDITKLKQANRELLHAKNMAENSLKVKEQFLANMSHEIRTPMNGVIGMVDLLSQTQL--- 617 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 NP + + + I RS +L I+ND+LD+SKIE+GKM + + + ++L Sbjct: 618 -NPEQMNFVHTIKRSSETLLTILNDILDLSKIEAGKMKIQPHITEVKSVFDKVLNLFSQQ 676 Query: 679 ANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 AN+K I + + IP+ L D + QI N+ SNA+ FT G++++ + + + Sbjct: 677 ANQKSIDLSYKIDSEIPKYLKIDETRIIQIISNLTSNALKFTEKEGKVLLHISKEIKDNL 736 Query: 738 I-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + V DTG+G++ + ++ K F Q+ NS GTGLGL ++K + G+ + S Sbjct: 737 YRIAVEDTGIGISENDQQQLFKLFTQVDNSSTKAFSGTGLGLAISKQLSSLMGGQIGVSS 796 Query: 797 TPAKGTL 803 P +G++ Sbjct: 797 EPDEGSV 803 >gi|239993534|ref|ZP_04714058.1| Response regulator receiver:ATP-binding region, ATPase-like protein [Alteromonas macleodii ATCC 27126] Length = 890 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/246 (34%), Positives = 135/246 (54%), Gaps = 11/246 (4%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 ++ AK AE+ ++ KS FLA +SHEIRTP+ IIG E+ + Q Y++ A Y Sbjct: 379 ITEAKIKAEQATASKSMFLANMSHEIRTPMNGIIGLIELAQQQELSTTVKG-YLDKAAY- 436 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG ++L ++ND+LD SKIE+GK+ + SL I+++ L A EK + + + Sbjct: 437 --SGQILLSVINDILDFSKIEAGKLKIEEVSFSLHSLFDNLIAVIALRAKEKNLSVHFTV 494 Query: 691 ANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDT 744 IP +++ D + QI +NI +NA+ FT G +I I NE+ + +R+ D+ Sbjct: 495 NPKIPPQVIGDPLRIAQIIMNIGNNAVKFTEQG-RIDIEFDGNLNEKGNVLNLTMRITDS 553 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+GM+ +L++ KPF Q S + GTGLGL + + + G+ ST KG+ Sbjct: 554 GIGMSAAQLDRIFKPFTQADGSTNRKYGGTGLGLAIVSQLTELMNGRLDATSTMGKGSTF 613 Query: 805 EIIFPL 810 E+ PL Sbjct: 614 EVELPL 619 >gi|332528619|ref|ZP_08404601.1| periplasmic sensor hybrid histidine kinase [Hylemonella gracilis ATCC 19624] gi|332041935|gb|EGI78279.1| periplasmic sensor hybrid histidine kinase [Hylemonella gracilis ATCC 19624] Length = 1206 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 137/235 (58%), Gaps = 8/235 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 HA++ AE+ + KS +++ +SHE+RTPL +I+G+++++ P ++ I R Sbjct: 742 HARRQAEQANQAKSRYISAISHELRTPLNSILGYAQLMGEDPQVPAHRKHAVQV---IRR 798 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 G +L ++ LD+++IESGK+ L +P++ + V E ++ +L A K + R + + Sbjct: 799 GGEHLLSLIEGTLDLARIESGKLTLDVKPMAFADVVHELAAMFELQAAAKGLAFRFAPLS 858 Query: 693 NIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 +P R+ AD + V+QI +N+L NAI FT + G++ H + E + +RDTG GM Sbjct: 859 TLPERVRADEKRVRQILINLLGNAIKFT-AQGEVTFQVRH-AREMAYIDIRDTGPGMALD 916 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 E+E+ +PF + ++Q G GLGL +AK + D G+ + STP G++ ++ Sbjct: 917 EMERLFEPFARTASAQGT--PGAGLGLTIAKMLTDLMGGELTVQSTPGLGSVFQV 969 >gi|327537685|gb|EGF24396.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47] Length = 935 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 142/247 (57%), Gaps = 7/247 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 TM DI+ ++ + L A+ A+ S KS FLA +SHEIRTP+TAI+G++E++ Sbjct: 527 TMLDITRQRKFEMDLKAARDAAQFASQSKSKFLANMSHEIRTPMTAILGYAELLGEHDL- 585 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 ++ I R+G+ +LDI++++LD+SKIE+ K+ ++ E L V + S++ Sbjct: 586 ---PAEACDFLKTIRRNGDYLLDIIDEILDLSKIEADKLEMNHELFDLMRVVEDVRSIMD 642 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A+EK + IR + +P RI +D + +KQI +N++ NAI FT G + ++ + Sbjct: 643 VRASEKDLQIRVCYDGKLPRRIQSDPKRLKQILINLVGNAIKFTRQ-GHVDLAVRYVDG- 700 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + + D+G+GM++ + K +PF Q +S GTGLGL +++ + G+ Y+ Sbjct: 701 HLQFDITDSGIGMSDDQKAKLFQPFSQGDSSVSRDFGGTGLGLAISRRLAKMLGGEIYVQ 760 Query: 796 STPAKGT 802 S +G+ Sbjct: 761 SQLRQGS 767 >gi|254501085|ref|ZP_05113236.1| hypothetical protein SADFL11_1121 [Labrenzia alexandrii DFL-11] gi|222437156|gb|EEE43835.1| hypothetical protein SADFL11_1121 [Labrenzia alexandrii DFL-11] Length = 837 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 99/363 (27%), Positives = 183/363 (50%), Gaps = 14/363 (3%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY---LT 514 L+ S+ +A+ +G + N A +++ E + R P E + +N Y Sbjct: 476 LDNLSEAVAVFGSDGKLRLWNPAFGRIWDLEEEQLSRFPHVN--EVVSACALNDYEKTAW 533 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL-TMHDISEWKQEKNKLSH 573 E L+ + ++ T ++ E+ + +P +L T D+++ + L Sbjct: 534 EQLASSVTGLVDNRTQNVSRLERHNGAVLDYATVPLPDGGTLVTFVDVTDSVNVERALLE 593 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 + E+ K+ F+ VS+E+R+PLT IIGF++++ + +FG L + EYA+YI S Sbjct: 594 KNEALEQADQIKNAFIQHVSYELRSPLTNIIGFAQLLADPKFGDL-TEKQGEYADYIQSS 652 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 + +L I+ND+LD++ +++G M L V L V A+ ++ E RI +RT +N Sbjct: 653 SSALLAIINDILDLATLDAGIMELDLREVDLASTVEAAVEGLKDRIAEARINLRTQVPDN 712 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 I ++AD + ++Q+ N++SNA+ ++ G + IS +++V V+D G+G+ L Sbjct: 713 IGNMIADEKRLRQVLFNLISNAVRYSEPDGVVDISCDR-DDDKVTFVVQDHGLGIPAEIL 771 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 + F + + R +G GLGL + K+ V+ + G I S KGT + +FP Sbjct: 772 TQVFNRF--VGHDTGARRQGAGLGLAIVKSFVELHGGTVDIDSVVGKGTTVTCVFP---- 825 Query: 814 SHP 816 +HP Sbjct: 826 AHP 828 >gi|330508230|ref|YP_004384658.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] gi|328929038|gb|AEB68840.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] Length = 998 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 108/368 (29%), Positives = 184/368 (50%), Gaps = 42/368 (11%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF--TVFLEQNTPSVMNHYLT 514 +LE + + + EG I+ N++ L G+ E+ + K TV E MN ++ Sbjct: 370 LLEQVHNTVIATDLEGNIIYWNKSAETLLGWKSEEAMGKNIAETVVPEWGLDK-MNRVIS 428 Query: 515 EILSLDLRQTLE---KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH------------ 559 +++ E K GST +PF C+S Sbjct: 429 DLIKDRGNWDGEFYFKKKDGST--------------VPFHQCFSSIRDGRGELIGLVGVA 474 Query: 560 -DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++E K + L AK+ AE+ + KSDFLA +SHEIRTP+ AIIG + ++ + PL Sbjct: 475 VDLTERKHIEEALKKAKREAEEAARVKSDFLANMSHEIRTPMNAIIGMTSLLLEE---PL 531 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P + I+ +G+ +L ++ND+LD SK+E+ K L ++ + V +++ LV + Sbjct: 532 -TPEQRDCIEVIETNGDALLTVINDILDFSKMENNKTVLEECQFAIAQCVEDSLDLVGIN 590 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEE 736 A K + + S ++P I+ D +KQ+ N+LSNA+ FT G ++ +S + Sbjct: 591 AANKGLNLAYSIDKSVPEMIVGDPSKLKQVLGNLLSNAVKFTDKGEVVVTVSAQEVDGDN 650 Query: 737 VI-LRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 VI VRDTG+G+ ++ PF Q+ P++ ++ G GTGLGL ++K +V+ G+ + Sbjct: 651 VIQFEVRDTGIGIPQNRMKLLFLPFSQMEPSTSRLYG-GTGLGLAISKRLVEMMKGRIWA 709 Query: 795 FSTPAKGT 802 S+ G+ Sbjct: 710 ESSEGTGS 717 >gi|320160588|ref|YP_004173812.1| putative two-component hybrid sensor and regulator [Anaerolinea thermophila UNI-1] gi|319994441|dbj|BAJ63212.1| putative two-component hybrid sensor and regulator [Anaerolinea thermophila UNI-1] Length = 1660 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/230 (36%), Positives = 131/230 (56%), Gaps = 5/230 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHE+RTPL +IIGFS VI GP+ + + + I SG +L+++ND+ Sbjct: 1165 KSQFLANMSHELRTPLNSIIGFSRVILRGIDGPINDTQKQDL-TAIYNSGQHLLNLINDI 1223 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+SKIE+GKM L F V++ + ++ A+S +K I + T +N+P + AD V Sbjct: 1224 LDLSKIEAGKMELSFSDVNMTDLINSAMSTAVGLVKDKPIKLITEIEDNLPIVRADATRV 1283 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFG 761 +Q+ +N LSNA FT G + + S E E+++ V DTG G+ + K PF Sbjct: 1284 RQVLINFLSNAAKFTDEGSITVRARRVRSPEGKPELMVTVTDTGPGIAEEDRSKLFLPFS 1343 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF-STPAKGTLIEIIFPL 810 Q+ +S + GTGLGL + +++++ + G+ + ST G+ PL Sbjct: 1344 QVDDSPTRKTGGTGLGLSICRSLIEMHGGRIGLLESTVGVGSTFFFTLPL 1393 >gi|320104460|ref|YP_004180051.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] gi|319751742|gb|ADV63502.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] Length = 976 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 132/237 (55%), Gaps = 10/237 (4%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A++ + KS FLA +SHEIRTPLT I+G++E++ +Q P E + +G + Sbjct: 527 ADEANRSKSSFLASMSHEIRTPLTLILGYTEMLMDQET----EPWKTEALRVVRHNGEYL 582 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696 L ++ND+LD+SKIE+GK+ FEPV + + + + Q A K + + + A +P R Sbjct: 583 LALLNDILDLSKIEAGKLETRFEPVDPFDLLRDVVDPFQPRARAKGLRLELTCATPLPRR 642 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIIST-----THTSNEEVILRVRDTGVGMTNY 751 ++ D V+Q+ +N++ NA+ FT G ++++ T S + + V DTG+GMT Sbjct: 643 VVTDPVRVRQVLVNLIGNALKFTDQGSVRVVASAEWEPTTGSARWIEIAVHDTGIGMTPE 702 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 ++ + +PF Q+ S R EGTGLGL +++ + G + S +G++ F Sbjct: 703 QMSRLFRPFEQVDPSLTRRHEGTGLGLAISRRLARMLGGNITVESVAGQGSVFRFRF 759 >gi|302334933|ref|YP_003800140.1| integral membrane sensor signal transduction histidine kinase [Olsenella uli DSM 7084] gi|301318773|gb|ADK67260.1| integral membrane sensor signal transduction histidine kinase [Olsenella uli DSM 7084] Length = 657 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/235 (34%), Positives = 127/235 (54%), Gaps = 3/235 (1%) Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 HKS FLA +SHE+RTPL +IIGF+ +++ G L N YA I SG +LD++ND Sbjct: 415 HKSQFLANISHELRTPLNSIIGFASLLQENVAGDL-NATQTRYAEIIIESGGHLLDLIND 473 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA--DL 701 +L + K+++ L VS+ EA+ + L++ A+E+ + A+ + A D Sbjct: 474 ILQLVKLDTSVDKLKLSRVSVIEAIRNPVDLIRPLADERGQGLEVIVADELDGYTAYWDE 533 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 + V QI LN+LSNA+ F+P GG+I + + V + V D G+G++N E+ F Sbjct: 534 QKVHQILLNLLSNAVKFSPDGGRIRVKASLVEENFVFIHVIDNGIGISNDMKERVFLAFE 593 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 Q NS +G GLGL + K +V+ + G+ ++ P G ++ PL P Sbjct: 594 QADNSYTRIYKGAGLGLAITKDLVEMHSGRIWLEDAPGGGLDACVVLPLCSNRKP 648 >gi|77460443|ref|YP_349950.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens Pf0-1] gi|77384446|gb|ABA75959.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens Pf0-1] Length = 922 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 141/237 (59%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y Sbjct: 275 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQLDYLGT 330 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRT 688 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ Sbjct: 331 IEKSADSLLGIINEILDFSKIEAGKLVLDHIPFNLRDLLQDTLTILAPAAHAKQLELVSL 390 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTG 745 + + ++ D +KQI N++SNAI FT G + + N++ + + ++DTG Sbjct: 391 VYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEENDDSVQLRISIQDTG 450 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++N ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 451 IGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 507 >gi|330895745|gb|EGH28034.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 289 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 86/275 (31%), Positives = 137/275 (49%), Gaps = 24/275 (8%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++E K+ + L E S KS+FLA +SHE+RTPL A+IGFSE +++ G + Sbjct: 3 RDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDM 62 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + Y I SG +L ++ND+LD+SK+E+G M L E V LDE +S ++ +V+ Sbjct: 63 TDAQR-RYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQ 121 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST--THTSNEE 736 A + I ++ + D R KQI N+L+NA+ F+ GG + ++ S Sbjct: 122 AALQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQAG 181 Query: 737 VI---------------------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 +I L V DTG+G+ ++ K K F QI + + EGTG Sbjct: 182 LIDGDWPTYGFTLPSGDCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTG 241 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 LGL + K + + + G + S G + P+ Sbjct: 242 LGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPI 276 >gi|219849092|ref|YP_002463525.1| histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543351|gb|ACL25089.1| histidine kinase [Chloroflexus aggregans DSM 9485] Length = 556 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/254 (31%), Positives = 136/254 (53%), Gaps = 3/254 (1%) Query: 558 MHDISEWKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 +H + + Q +N +L+ + + K +FLA +SHE+RTPLTAI+G +V++ Q G Sbjct: 146 LHLLKDRIQRQNVELARINAGLLRVTKLKDEFLASMSHEVRTPLTAILGLVDVLRAQLVG 205 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + + N I + G +L ++ND LDI+KIE+G++ L PVS+ + ++ Sbjct: 206 PLSEEQ-MGAINGIKQGGQHLLALINDYLDIAKIEAGRLELDLTPVSVHDICQSLRPMIA 264 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A + + + +LAD R ++QI +N+LSNAI FTP+GG++ + + Sbjct: 265 DMAKRAGLQLVYDLDPTVQVMLADARRLRQILINLLSNAIKFTPAGGKVGLEVRGDAERG 324 Query: 737 VI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V DTG+G++ + + +PF QI + +Q G+GLGL L + + G + Sbjct: 325 AVRFTVWDTGIGISAEDAARLFEPFQQIESERQKEVTGSGLGLALVAKLARLHGGSVSLE 384 Query: 796 STPAKGTLIEIIFP 809 S G+ + P Sbjct: 385 SEVGVGSRFHVTLP 398 >gi|86142642|ref|ZP_01061081.1| PAS domain protein [Leeuwenhoekiella blandensis MED217] gi|85830674|gb|EAQ49132.1| PAS domain protein [Leeuwenhoekiella blandensis MED217] Length = 1205 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 114/394 (28%), Positives = 196/394 (49%), Gaps = 35/394 (8%) Query: 437 DVDTRINKRK-MEIEVMQLCSILEATSDGIAI-INREGIILSTNRAVSKLFGYPVEDIL- 493 D+ IN +K +E + ++ IL++T+ I + + + II N+ L GY E+++ Sbjct: 524 DMTDEINAKKALESSLNEMRVILDSTTQVIIVETDLDHIIRKFNKGAENLLGYTAEEVIG 583 Query: 494 -RKPFTVFLEQNTPS----VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 +KP +++ + + Y ++ D+ KI G + +R Sbjct: 584 NQKPAIFHVDEEVENYALKLKEEYGEQVDKHDVFTY--KINRGELETRDWTYVRKDGTTF 641 Query: 549 PF-------------SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 P ++ Y DIS K + L AK+ AE + +KS+FLA +SHE Sbjct: 642 PVQLVVTAIKDDEGKTTGYLGVSADISALKAMEYSLIKAKQKAEAANKYKSEFLANMSHE 701 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 IRTPL +IGF++++ PL N +Y I S +LD++ND+LD SKIE+GK+ Sbjct: 702 IRTPLNGVIGFADILMK---SPL-NENQQKYMETIYASAISLLDLINDILDFSKIEAGKL 757 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714 +L E V++ E ++ +++ A +K I + + I + I+AD ++QI +N+LSN Sbjct: 758 SLSEERVNITELCGRSVEMIKHEAYQKNIEVLLNIPQKIDQYIIADGLRLRQILINLLSN 817 Query: 715 AIHFTPSGGQIII------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 A+ FT G+I + S H + ++ +RDTG+G++ L++ K F Q S Sbjct: 818 AVKFTHD-GEIELKVEEQNSALHPNKKQFTFSLRDTGIGISEQNLQEIFKAFNQGDASTT 876 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + GTGLGL ++ ++ K + ST GT Sbjct: 877 RKYGGTGLGLTISNRLLQLMESKLEVRSTLGVGT 910 >gi|298675021|ref|YP_003726771.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288009|gb|ADI73975.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 370 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 95/251 (37%), Positives = 146/251 (58%), Gaps = 3/251 (1%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ KQ + L AK AE S KS+ LA VSHE+RTPLT+IIGFS+++ + G L Sbjct: 114 DITTRKQAEENLIIAKLEAEATSQAKSELLANVSHELRTPLTSIIGFSDIMLKGKAGKLN 173 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N + I Y N I +SG +LD++NDLLD+SKIESGKM LH+E +SL E + + ++ + A Sbjct: 174 NNQ-INYLNKIHKSGQNLLDLINDLLDLSKIESGKMELHYEKISLTEIIEDLMAKLSPLA 232 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 +EK + + + +I + D ++QI N++ NAI FT +G I + + Sbjct: 233 SEKGLTLDSKINPDIEYVCMDNIKLRQILYNLIYNAIKFTNNGS--ITTEVDFVDNNYQF 290 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ + ++ + F Q+ +S + R GTGLGL L K +V+ + G + S Sbjct: 291 SVIDTGIGIPEDKQDEIFESFKQLDSSTKRRHAGTGLGLTLVKRLVEIHGGYIEVESKYG 350 Query: 800 KGTLIEIIFPL 810 +G+ P+ Sbjct: 351 EGSRFTFTIPM 361 >gi|119962503|ref|YP_948930.1| signal transduction histidine kinase [Arthrobacter aurescens TC1] gi|119949362|gb|ABM08273.1| putative signal transduction histidine kinase [Arthrobacter aurescens TC1] Length = 1153 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 107/379 (28%), Positives = 191/379 (50%), Gaps = 21/379 (5%) Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 ++++++ +R E+E L +I+ ++ D I +G+I S N ++FGYP + + + Sbjct: 331 ELESKVAQRTAELE--GLGAIVNSSGDAIIGETPDGVITSWNPGAERIFGYPASEAIGRQ 388 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553 F+ Q+ L Q E + K++ + + + + S Sbjct: 389 GDFFVPQDLVENERRALESTAQSGHVQNYESQR--QRGDGKVIPVSVTLSPVRGGSGIRG 446 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + DI+E K + +L A++ A + S KS+FLA +SHEIRTPL A+IG + ++ + Sbjct: 447 VATISRDITERKAAEKELLAAREAALEASRLKSEFLATMSHEIRTPLNAVIGLTSLMMDT 506 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 PL + +YA + +G ++L ++ND+LD SK+E+GK++L E V E Sbjct: 507 ---PLSEGQR-QYAQGVKGAGEVLLTLINDILDFSKLEAGKVDLDINAFDPRELVEEVAG 562 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIIST-- 729 LV A K + + + ++P R++ D ++QI LN+ SNA+ FTP G ++ +S Sbjct: 563 LVVEAAQGKDLELISYCHPDVPARLMGDAGRIRQILLNLSSNAVKFTPDGEVEVQVSVLA 622 Query: 730 -----THTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 H N+ + VRDTG+G++ ++ + F Q S R GTGLGL +++ Sbjct: 623 HDPNLAHDPNKASLRFEVRDTGIGISAENHQRLFESFAQADASTTRRYGGTGLGLAISRR 682 Query: 784 MVDANMGKFYIFSTPAKGT 802 + + GK + S P G+ Sbjct: 683 LTEVMGGKIGLDSEPGVGS 701 >gi|117925117|ref|YP_865734.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117608873|gb|ABK44328.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 780 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/255 (31%), Positives = 144/255 (56%), Gaps = 8/255 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 HD++E + + +L AK+ AE + KS+FLA +SHEIRTP+ +I+G +E++ PL Sbjct: 377 HDVTERHRAEFELLTAKEQAEAANRTKSEFLAMMSHEIRTPMNSILGMAELLSE---SPL 433 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P Y R+G+ +L+++ND+LD+SK+E+G++ L+ +P +L E + + L++ Sbjct: 434 -TPEQQGYLKIQRRAGHGLLELINDILDLSKLEAGRIELYIQPFNLPELLQSVVDLLENL 492 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736 A E+ + +R IP + D ++QI +N++ NAI FT G + IS +S++ Sbjct: 493 ARERGLALRLERMEEIPTLCQGDRARLRQIMVNLVGNAIKFTHDGS-VKISVEKSSDDAT 551 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++ V D+G+G+ + + F QI +S G+GLGL + +V+ GK ++ Sbjct: 552 NLLFHVIDSGIGIAEKDQSSVFQRFTQIDSSNSRFYGGSGLGLAITHHLVELMGGKIWLK 611 Query: 796 STPAKGTLIEIIFPL 810 S +G+ PL Sbjct: 612 SALGEGSCFTFTLPL 626 >gi|237748247|ref|ZP_04578727.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes OXCC13] gi|229379609|gb|EEO29700.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes OXCC13] Length = 692 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 91/281 (32%), Positives = 149/281 (53%), Gaps = 17/281 (6%) Query: 543 IIIKKLPFSSCYSLTMH-------DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 I++ L ++ +LT++ ++ + + L A +A+ ++ K +FL+R+SHE Sbjct: 114 IVVSILLGAAIITLTIYFNLMERKRLTALSKREADLRDALVLAQNANNAKKEFLSRMSHE 173 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGK 654 IRTP+ IIG + + N L + +E I S +L ++ND+LD+SKIE GK Sbjct: 174 IRTPMNGIIGMTTIAGNY----LDDRTRVEDCLAKIAFSSRHLLSLINDVLDMSKIEEGK 229 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILS 713 + ++ EP L + IS+V L A E + T+ A+ + D + QI LN+LS Sbjct: 230 LAINREPFKLQPFLESVISIVWLQAKEHGLAFETALADITADTFIGDSMRINQILLNLLS 289 Query: 714 NAIHFTPSGGQIIISTTH--TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 NA+ FT GG + + N EV LR + DTG+GM+ L + PF Q P++ Sbjct: 290 NALKFTLKGGTVRLQVKQFILKNNEVRLRFSISDTGIGMSEEFLSRLFIPFEQAPSTISK 349 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + GTGLG+ + K +V+ G ++ S+P KGT I + P+ Sbjct: 350 KYGGTGLGMAITKNLVNLLGGTIHVKSSPGKGTTITVELPV 390 >gi|224373295|ref|YP_002607667.1| sensor histidine kinase/response regulator [Nautilia profundicola AmH] gi|223588528|gb|ACM92264.1| sensor histidine kinase/response regulator [Nautilia profundicola AmH] Length = 1030 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/230 (36%), Positives = 125/230 (54%), Gaps = 9/230 (3%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE+ + KS FLA +SHEIRTPL I+GF E++ ++Y N I +S + Sbjct: 388 AEEATKAKSLFLANMSHEIRTPLNGILGFLELLNTTDL----TEEQLDYVNTIAQSAKNL 443 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L IVN++LD+SKIES K++L + I L A +K I + T + NIP I Sbjct: 444 LQIVNNILDVSKIESNKVSLELIDFKAVDEFENTIELFGTPAAQKNIELTTQISPNIPSI 503 Query: 698 L-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVILRVRDTGVGMTNYE 752 + D+ +K+I N+LSNAI FTP+ G I + + ++ VRD+G+GM+ + Sbjct: 504 IKGDILKIKEILTNLLSNAIKFTPNNGHIHVKIQLEKIIDNKAKIYFEVRDSGIGMSEEQ 563 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 EK + F Q S + GTGLGL + K+ ++ GK Y+ S KGT Sbjct: 564 KEKIFEAFSQADESVTRKYGGTGLGLTIVKSYIEMMGGKIYLESELNKGT 613 >gi|317486464|ref|ZP_07945289.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] gi|316922267|gb|EFV43528.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] Length = 907 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 92/258 (35%), Positives = 137/258 (53%), Gaps = 13/258 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+ E +++K L A AE+ + KS+FL+R+SH+IRTP+ AIIG + + +G Sbjct: 364 DVEEEERQKATLRMALVAAEQANHAKSEFLSRMSHDIRTPMNAIIGMAAIAGMN----VG 419 Query: 620 NP-RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 NP R E N I S +L ++ND+LD++KIESGKM+L EP DE VS S Sbjct: 420 NPERLSECLNNIALSSRFLLSLINDVLDVAKIESGKMSLASEPFDFDELVSSVSSFTYGS 479 Query: 679 ANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS---- 733 A K I+ + + +I + D +KQ+ +N+LSNA+ F P G+I + T Sbjct: 480 AVAKGIIFNLFASPLLEKIYVGDPLRIKQVLMNLLSNALKFAPEKGRIEFNITPVQKVGH 539 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG-EGTGLGLPLAKAMVDANMGKF 792 E V + D G+GM+ E+ +PF Q Q RG G+GLGL + ++ V G Sbjct: 540 RELVRFVISDNGIGMSKSFQERMFQPFEQEMTDQ--RGLSGSGLGLAIVRSFVQLMDGTI 597 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S KG+ + PL Sbjct: 598 RVESEQGKGSSFSVDIPL 615 >gi|255531848|ref|YP_003092220.1| PAS sensor protein [Pedobacter heparinus DSM 2366] gi|255344832|gb|ACU04158.1| PAS sensor protein [Pedobacter heparinus DSM 2366] Length = 1179 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 90/276 (32%), Positives = 151/276 (54%), Gaps = 15/276 (5%) Query: 553 CYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 CY + T+ DI++ K+ + L AK+ AE + KS+FLA +SHEIRTPL IIGF++++ Sbjct: 516 CYKISGTIQDITKIKRMEANLISAKEDAESANKAKSEFLANMSHEIRTPLNGIIGFTDLL 575 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + N +Y + + +SGN +L+ +ND+LD SKIE+GK+ +++ +L E E Sbjct: 576 IKTQL----NETQQQYLSIVTQSGNALLNTINDILDFSKIEAGKLEMNWSKFNLYEMAEE 631 Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 + +++ K + + + + ++P+ I AD +KQI +N+L NA+ FT S G+I + Sbjct: 632 SADVIKYQVQSKGLEMLLNISADLPKYIWADELRLKQILINLLGNAVKFTES-GEIELKV 690 Query: 730 THTSNEEV-----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 +N E+ VRDTG+G+ + K F Q S R GTGLGL ++ + Sbjct: 691 EALTNPELPEIKYRFSVRDTGIGINPDKKLKIFDAFSQEDASTTKRYGGTGLGLTISNKL 750 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 + + + S KG++ F + S P + I Sbjct: 751 LGLMNSQLQVESVIGKGSV--FYFEIILQSEPGESI 784 >gi|226228272|ref|YP_002762378.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] gi|226091463|dbj|BAH39908.1| putative two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] Length = 1028 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/256 (33%), Positives = 140/256 (54%), Gaps = 8/256 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ D+++ + + L A++ AE + KS+FLA +SHEIRTPLTAI+G +++++ + Sbjct: 501 TVMDVTDAIEREEALRQAQQYAEGANRSKSEFLANMSHEIRTPLTAILGHTDLLREEAVR 560 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD--EAVSEAISL 674 ++ I R+G +L ++ND+LDIS+IE+G+ L EPV+ D + + SL Sbjct: 561 SAAPRDQVQGLETIQRAGEHLLTVLNDILDISRIEAGR--LEIEPVACDLPALLLDVESL 618 Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A K + + T N +P R+ AD V+QI +N++ NA+ FT G I + + Sbjct: 619 MRARAAAKGLTLETRLRNTVPSRVFADPTRVRQILMNLVGNAVKFTAYGRVTIEAGVERA 678 Query: 734 --NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 E + + V DTG GMT + +PF Q S R GTGLGL + + + G Sbjct: 679 EGQEWLTITVDDTGPGMTEQQESLLFQPFMQADGSVTRRHGGTGLGLAICRRLATLMGGH 738 Query: 792 FYIFST-PAKGTLIEI 806 + T P +G+ E+ Sbjct: 739 VRLVHTAPGRGSRFEL 754 >gi|158338777|ref|YP_001519954.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] gi|158309018|gb|ABW30635.1| two-component hybrid sensor and regulator histidine kinase, putative [Acaryochloris marina MBIC11017] Length = 826 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 110/378 (29%), Positives = 181/378 (47%), Gaps = 49/378 (12%) Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT- 524 A+I +G L N A+S+L GY ++L+ + H + ++L + QT Sbjct: 167 ALIALDGSWLQVNPALSQLLGYDPTELLKLRIEDLTHPEDQDIDRHQVRQLL---IGQTS 223 Query: 525 ---LEKI---TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE----------- 567 +EK LG T LLS+ +I+ S + M DI++ KQ Sbjct: 224 SYQIEKRFLHRLGHTLS-VLLSVALILNSQGKPSYFIAEMQDITQRKQAEAALYLQLQKT 282 Query: 568 ---------KNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 KN+ L + + A+ + KS+FLA +SHEIRTP+ A+IG ++++K+ Sbjct: 283 LQLQTALQTKNQALLESSQAAQAANLAKSEFLAMISHEIRTPMNAVIGMTDLLKDTHL-- 340 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 +P ++ I SG +L+I+ND+LD SKIESGK+ L P + V EA+ +V Sbjct: 341 --DPHQQDFVETIRTSGESLLNIINDILDFSKIESGKLELELHPFPISTCVEEALDIVNS 398 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII------ISTT 730 A K + + P I D ++QI +N+L NA+ FT G I+ ++T Sbjct: 399 KATAKGLELAYLIEPGTPNHIQGDANRLRQILVNLLGNAVKFTADGEVIVTISARDVATA 458 Query: 731 HTSNE------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + E E++ V+DTG+G+ +K + F Q+ +S GTGLGL ++K + Sbjct: 459 EMTPEVPLSLHELLFEVKDTGIGIAPEHQQKLFQSFCQLDSSITREYGGTGLGLAISKQL 518 Query: 785 VDANMGKFYIFSTPAKGT 802 + G ++ S G+ Sbjct: 519 CELMGGTIWVESQVGIGS 536 >gi|71905865|ref|YP_283452.1| PAS [Dechloromonas aromatica RCB] gi|71845486|gb|AAZ44982.1| PAS protein [Dechloromonas aromatica RCB] Length = 1214 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 133/233 (57%), Gaps = 8/233 (3%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A++ AE + +++FLA +SHEIRTPL A+IG + ++ + G R +EY I+ + Sbjct: 567 ARQEAEGLARARAEFLANMSHEIRTPLNAVIGLAYLLLQNKLGE----REMEYVKRIEGA 622 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G L+L IVND+LD SKI++GKM L LD+ + SLV+ A EK +++ A + Sbjct: 623 GKLLLAIVNDVLDFSKIDAGKMQLEESSFQLDDLLDNLSSLVRTRAQEKNLVLEYVVAPD 682 Query: 694 IPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTGVGMT 749 + L D + QI +N++SNAI FT G + +++ + E+ R++DTG+GM+ Sbjct: 683 ATQNLRGDALRLSQILINLVSNAIKFTAEGSITVFIDVASNKDNRIELEFRIQDTGIGMS 742 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + + + F Q +S + GTGLGL ++K +++ G + S P G+ Sbjct: 743 AEQTDNLFRAFSQADSSVTRKFGGTGLGLAISKRLIEMMGGTIWAHSVPQVGS 795 >gi|307634952|gb|ADI84766.2| sensor histidine kinase response regulator, HAMP and Hpt domain-containing [Geobacter sulfurreducens KN400] Length = 810 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 88/262 (33%), Positives = 130/262 (49%), Gaps = 14/262 (5%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ LS AK+ A+ S KS FLA VSHEIRTP+ ++G ++ + Sbjct: 281 ELERAVADLSKAKEAADSASQSKSRFLANVSHEIRTPMNGVLGMVSLLLETDL----QAK 336 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 EYA I SG L++ ++NDLLD S+IESGK+ + P + + E ++ A +K Sbjct: 337 QREYAEIIRSSGELLMQVINDLLDFSRIESGKLKMEQLPFAARRVIEEMATIYGERARQK 396 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR- 740 + + S A +P R+L D ++Q+ N+L NA+ FT G I T S E + R Sbjct: 397 GVFLEYSMAGEVPDRLLGDRHRLRQVLGNLLDNAVKFTLKG--TITLTVRGSVEGGVCRL 454 Query: 741 ---VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V DTG+G+ L + PF Q +S R GTGLGL + + +V+ G S Sbjct: 455 SCIVSDTGIGIPQDMLPRLFHPFTQADDSNTRRFGGTGLGLAIVRHLVELMGGTVSCDSE 514 Query: 798 PAKGTLIEIIFPLY---DTSHP 816 P G++ L DT P Sbjct: 515 PGCGSVFRFTVALSVVPDTGEP 536 >gi|313683144|ref|YP_004060882.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] gi|313156004|gb|ADR34682.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] Length = 1421 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 110/384 (28%), Positives = 197/384 (51%), Gaps = 39/384 (10%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYL 513 ++L+ ++ GI + + E +I+ T++ ++FGY ++++ K F + E++ Y Sbjct: 580 ALLDNSAVGIFLASPERMIIETSKRAYEMFGYSADELIGKSFRIIHVSEESFEDFGTQY- 638 Query: 514 TEILSLDLRQTLE---------KITL---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561 +LS D R +E KI G+ +E LS II T+ DI Sbjct: 639 QNLLS-DGRTNIEYPFIKKNGVKIWCSVSGTPLDESDLSKGII-----------WTLQDI 686 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E K + + AK+ AE+ + KS FLA +SHEIRTP+ AI+G S+V+ + P Sbjct: 687 TERKAAERAMLIAKEQAEEANISKSRFLANMSHEIRTPMNAILGLSQVMLDSDMA----P 742 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + ++ I S ++L I+ND+LD SKIE+ K+ L + +L+ +++ L A E Sbjct: 743 KEKDFLLKIHSSSKMLLGIINDILDYSKIEANKLELEHKNFNLENVLAQLKVLFTQSAAE 802 Query: 682 KRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEV 737 + + +++P I+ D + Q+ N+LSNA+ FT G I + H + + Sbjct: 803 HGLELYFHKKSDVPEIIVGDELRLDQVLTNLLSNALKFTHHGTVTLAIELKERHENRAII 862 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + DTG+G+++ ++ K +PF Q +S + GTGLGL ++K +V+A G+ + S Sbjct: 863 GFSLTDTGIGISDEDISKLFQPFNQADSSMTRKYGGTGLGLAISKRLVNAMGGELSLSSV 922 Query: 798 PAKGTL----IEIIFPLYDTSHPH 817 +G+ I++ ++ SH H Sbjct: 923 KGEGSTFSFDIDVEVVSWEQSHEH 946 >gi|283851902|ref|ZP_06369178.1| signal transduction histidine kinase with CheB and CheR activity [Desulfovibrio sp. FW1012B] gi|283572626|gb|EFC20610.1| signal transduction histidine kinase with CheB and CheR activity [Desulfovibrio sp. FW1012B] Length = 1507 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/260 (31%), Positives = 147/260 (56%), Gaps = 13/260 (5%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D+S+ K+ +L AK+ AE+ + KS+FLA +SHEIRTP+ I+G +++ N+ Sbjct: 1103 LRDVSDNKRFAKELLEAKQKAERANRTKSEFLANMSHEIRTPMNGILGMTQLALNRDL-- 1160 Query: 618 LGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P + E+ + +SG +LDI+ND+LD+SKIE+G++ L +P L E V + + Sbjct: 1161 ---PDDVREFLQLVHQSGQSLLDIINDILDLSKIEAGRVVLEQKPFDLVEMVESTLKPLG 1217 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 L A +K + S A +P R++ D ++QI N++ NAI FT G++ + + Sbjct: 1218 LLARDKGLTFLFSIAPGVPDRVIGDKGRLRQILTNMVGNAIKFTKR-GRVEVKVRLAEIQ 1276 Query: 736 E-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 E ++ ++D G+G+++ ++ + F QI +S ++ GTGLGL ++KA+V+ G Sbjct: 1277 EPGRASLLFLIKDEGIGISSAQIHSIFEKFEQIASSAHVQYGGTGLGLAISKALVEMMGG 1336 Query: 791 KFYIFSTPAKGTLIEIIFPL 810 + S +G+ + L Sbjct: 1337 VIQVESELHRGSTFSFVLTL 1356 >gi|94263458|ref|ZP_01287271.1| PAS [delta proteobacterium MLMS-1] gi|93456188|gb|EAT06327.1| PAS [delta proteobacterium MLMS-1] Length = 825 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/234 (35%), Positives = 129/234 (55%), Gaps = 14/234 (5%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG-NPRYIEYANYIDRSGNLVLDIVND 643 KS+FLA +SHEIRTPL IIG SE++ P +P + YA I SG +L I+ND Sbjct: 302 KSEFLANMSHEIRTPLNGIIGLSELLAA---APENLDPEHRRYAGLIHDSGQALLTIIND 358 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLR 702 +LD SKIE+G + L + +L +AV+ + L + A K I ++ ++ +P +L D + Sbjct: 359 ILDFSKIEAGHLELAEQQFNLHDAVTTTLELAKATAGAKDIPLKLEYSPELPGELLGDPQ 418 Query: 703 SVKQIALNILSNAIHFTPSGGQIIIS--------TTHTSNEEVILRVRDTGVGMTNYELE 754 ++Q+ LN+LSNA+ FT S G+I++ T + V+DTG+G+ LE Sbjct: 419 RLRQVLLNLLSNALKFTES-GEIVLRLAAADQAPATSAPALPISFTVKDTGIGIAAERLE 477 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + F Q S GTGLGL + + +V A G + S P +G+ ++I Sbjct: 478 QIFEAFNQADTSSTRHQAGTGLGLAIVRRLVTAMGGTIKVESEPGQGSSFQVII 531 >gi|163742422|ref|ZP_02149809.1| Hybrid sensory histidine kinase [Phaeobacter gallaeciensis 2.10] gi|161384372|gb|EDQ08754.1| Hybrid sensory histidine kinase [Phaeobacter gallaeciensis 2.10] Length = 759 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/252 (32%), Positives = 135/252 (53%), Gaps = 7/252 (2%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 SE + + L A+K A+ + KS+FLA +SHEIRTP+ +IG +E+I + Sbjct: 217 SERDEREYALEEARKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILETDL----DE 272 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 YA I +SG+ +L I+ND+L+ SKIE+GKM L P +L A+ + ++L+ A E Sbjct: 273 DQTMYAETISKSGSALLTIINDILNFSKIEAGKMELERAPFNLQTAIEDVVTLLSPKAAE 332 Query: 682 KRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K + + + ++P D+ ++QI N+ NA+ FT G I + T ++ LR Sbjct: 333 KNVEVTLRYDPSLPECYEGDVGRIRQILTNVAGNAVKFTGKGYVYIEVSGETDDDRTALR 392 Query: 741 --VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG G+ + L++ F Q + EGTGLGL ++ +++ G+ + S Sbjct: 393 ISVTDTGAGIPDDRLDRIFNAFEQADGAATRNYEGTGLGLAISTRLLELMGGRISVQSEL 452 Query: 799 AKGTLIEIIFPL 810 KG++ I PL Sbjct: 453 GKGSVFTIDLPL 464 >gi|212635122|ref|YP_002311647.1| PAS domain-containing protein [Shewanella piezotolerans WP3] gi|212556606|gb|ACJ29060.1| PAS domain protein [Shewanella piezotolerans WP3] Length = 1831 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 83/247 (33%), Positives = 135/247 (54%), Gaps = 8/247 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ K+ +L A K A++ + KSDFLA +SHEIRTP+ AIIG S +I+ Sbjct: 985 DITTEKENARQLEIAVKTADEATRAKSDFLANMSHEIRTPMNAIIGMSYLIQQTDL---- 1040 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N + +Y I S +L I+ND+LD SKIE+ K+ L P +L+++ + ++ Sbjct: 1041 NRKQSDYVTKIQNSAESLLGIINDILDFSKIEASKLELEMTPFNLNDSFDNLVQIIAHKT 1100 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +K + + N+P ++ D + QI +N+ +NA+ FT G II + +E+ + Sbjct: 1101 QQKGLELLIDIEPNLPVDLIGDPLRLGQILINLANNAMKFTDEGEIIIKARAVEQHEQQV 1160 Query: 739 ---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V+DTG+GMT +L K K F Q S + GTGLGL ++K + + GK ++ Sbjct: 1161 TIEFAVKDTGIGMTPEQLNKLFKSFSQADASTTRKYGGTGLGLTISKTLTELMAGKIWVE 1220 Query: 796 STPAKGT 802 S+ +G+ Sbjct: 1221 SSYGEGS 1227 >gi|312129290|ref|YP_003996630.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM 17132] gi|311905836|gb|ADQ16277.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM 17132] Length = 1288 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 86/239 (35%), Positives = 137/239 (57%), Gaps = 8/239 (3%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + +L A K AE+ ++ KS FLA +SHEIRTPL +IGFS+++ PL N +Y Sbjct: 650 QKELKEAMKSAEQANAAKSQFLANMSHEIRTPLNGVIGFSDLLLKT---PL-NATQRQYL 705 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 NYI+ SG+ ++ I+ND+LD SK+E+GKM L S+ + + I++V A K I + Sbjct: 706 NYINESGSSLMQIINDILDFSKVEAGKMELDEAFHSIYDLSDQVINVVMYQAQVKNIELL 765 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRD 743 + +P +L D VKQ+ +N+L NA+ FT G ++ + +++E+ LR VRD Sbjct: 766 LDVQHGLPAAVLLDEARVKQVLVNLLGNAVKFTEEGEVELAVRQISRTDKEIGLRFLVRD 825 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TG+G+ + E+ F Q +S R GTGLGL ++ +++ K Y+ S G+ Sbjct: 826 TGIGIPEEKKERIFDAFTQEDSSISKRYGGTGLGLTISNSILKHMGSKLYLESEVGWGS 884 >gi|153870045|ref|ZP_01999526.1| two-component system sensor histidine kinase/response regulator [Beggiatoa sp. PS] gi|152073490|gb|EDN70475.1| two-component system sensor histidine kinase/response regulator [Beggiatoa sp. PS] Length = 1258 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 89/297 (29%), Positives = 150/297 (50%), Gaps = 33/297 (11%) Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 L ++++ + S M E Q +L AK+ AE + KS FLA +SHE+RT Sbjct: 728 LEIQVVQRTKELSEKTEELMQSHQELAQSYQQLETAKEKAEVANRAKSTFLASMSHELRT 787 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PL AI+GF++++ P + + N I+RSGN +L ++ND+LD+SKIE+GK+ L Sbjct: 788 PLNAILGFAQIMHRSSTLP---TEHRDNLNIINRSGNYLLSLINDVLDMSKIEAGKITLD 844 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIH 717 + L + E L L A K++ ++ ++++PR I D + ++Q+ +N++SNA+ Sbjct: 845 EQNFDLYRLLDEIYDLFYLKAESKQLQLQVERSDHLPRYIRTDGKKLRQVIINLISNALK 904 Query: 718 FTPSGGQIIIS---TTHTSNE-------------------------EVILRVRDTGVGMT 749 FT GG + + ++TS E + V DTG G+ Sbjct: 905 FTQDGGVSLYADKIASNTSGEVPPPSGRRLRGGKNPDGEDVNTEITTLHFSVADTGAGVA 964 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 E++K + F Q + + EG+GLGLP+++ G + S KGT+ E+ Sbjct: 965 QEEMDKLFEAFSQTATGRASQ-EGSGLGLPISRQFTQLMGGNIQVRSEVGKGTVFEV 1020 >gi|153870479|ref|ZP_01999873.1| Signal transduction histidine kinase [Beggiatoa sp. PS] gi|152073056|gb|EDN70128.1| Signal transduction histidine kinase [Beggiatoa sp. PS] Length = 660 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 109/373 (29%), Positives = 193/373 (51%), Gaps = 19/373 (5%) Query: 442 INKRK-MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 I KRK +E E+ + +E +++ I I + +G I N A S+ GY +++ K Sbjct: 258 IAKRKQVEEELRKFSRAVEQSANTIIITDLKGDIQFVNPAFSRQTGYAYHEVIGKNLRFL 317 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL----SLRIIIKKLPFSSCYSL 556 P L + ++ L + + L K +L ++ I + ++ Y Sbjct: 318 KSGKYPPAFYKKLWD--TIKLGRVWQGEVLNQHKNGELFWNFTTISPIKDQNGQTTHYLA 375 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 DI+E K+ + +L +K++AE + K+ FL +SHE+RTPLTAI+G+++++K + Sbjct: 376 ISRDITERKRAEAELFKSKELAESANQAKTAFLTNMSHELRTPLTAILGYAQLLKQDK-- 433 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L + + E I RSG +L +++D+LD+SKIE+GK+ L L + + L Sbjct: 434 RLTDEQR-EGIQIIYRSGEHLLTLISDILDLSKIEAGKLELVPSDFHLPTLFQDIVELFG 492 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--- 732 + +K I + + +PR AD + ++QI LN++SNAI FT + GQ+ + +T Sbjct: 493 IRFEQKGIELVYEPLSELPRAAHADRKRLRQILLNLVSNAIKFTET-GQVSLKVQYTPIP 551 Query: 733 ---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + ++ + V D+G+G+ LEK PF Q+ N + EGTGLGL + K +V+ Sbjct: 552 DNKNQGKMRVDVEDSGIGIAAAHLEKIFLPFQQVGN-KMYYSEGTGLGLSITKTLVEMMG 610 Query: 790 GKFYIFSTPAKGT 802 G+ + S +G+ Sbjct: 611 GQLQVKSRLGRGS 623 >gi|330508123|ref|YP_004384551.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] gi|328928931|gb|AEB68733.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] Length = 808 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 86/248 (34%), Positives = 139/248 (56%), Gaps = 8/248 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI E K+ + L +K+ AE ++ KS+FLA +SHEIRTPL A+IG + ++ G Sbjct: 395 EDILERKKIEEDLRRSKEAAEAATNAKSEFLANMSHEIRTPLNAVIGLTGIL----LGTD 450 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N ++ I SG+ +L I+ND+LD SKI+SGKM L +P + +++ +A+ L+ Sbjct: 451 LNREQRDHMEIIRSSGDALLAIINDILDFSKIDSGKMELEVQPFDVKKSIEDAVDLMAPV 510 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE- 735 A EK + + +IP+ I++D ++QI +NIL NA+ FT SG +I++S Sbjct: 511 AQEKGLTLGYDIEESIPKTIVSDPTRLRQILVNILGNAVKFTSSGEVRILVSGRDLGGRE 570 Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E+ V DTG+G+ ++ + F Q+ R G GLGL ++K +V+ G + Sbjct: 571 HEIHFAVMDTGIGIPAEKMNCLFQSFCQVEPCTTRRYGGAGLGLAISKRLVELMDGSIWA 630 Query: 795 FSTPAKGT 802 S KG+ Sbjct: 631 ESEEGKGS 638 >gi|217970259|ref|YP_002355493.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] gi|217507586|gb|ACK54597.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] Length = 878 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 84/270 (31%), Positives = 149/270 (55%), Gaps = 8/270 (2%) Query: 549 PFSSCYSLTMHDISEWKQEKN---KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 PF+S +L ++ +K+++ +L A+ AEK + K++FL+ +SHE+RTPL AI+G Sbjct: 468 PFTSTCALLINLYRLFKEQQRFTEELQQARDQAEKANQAKTEFLSSMSHELRTPLNAILG 527 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 F+++++N R PL + R + I RSG +L ++N++LD+++IESG++ + EP+ Sbjct: 528 FAQLLQNGR-QPL-SERQLRQVEQIARSGRHLLQLINEVLDLARIESGRLQVSLEPMLAH 585 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ 724 + + +A +V A ++ I + A R D VKQI +N+L NAI + GG Sbjct: 586 DVIEDAAQIVLPLAEQQGIALALPPAQACALRFTGDYTRVKQILINLLGNAIKYNRPGGA 645 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + + I V DTG+G+ L + +PF ++ ++ EGTG+GL L + + Sbjct: 646 VEVRCEAVGGRCRI-GVVDTGIGIPASRLGELFQPFNRL-GAESGSIEGTGVGLALTRKL 703 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 VD G+ + S +G+ PL + + Sbjct: 704 VDLMHGELGVHSREGEGSAFWFELPLCEQA 733 >gi|153870595|ref|ZP_01999963.1| signal transduction histidine kinase [Beggiatoa sp. PS] gi|152072938|gb|EDN70036.1| signal transduction histidine kinase [Beggiatoa sp. PS] Length = 1313 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 108/382 (28%), Positives = 188/382 (49%), Gaps = 21/382 (5%) Query: 442 INKRKMEIEVMQLCS-ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 I +RK E ++ +++ S I +++EG N A + GY + +L T Sbjct: 695 ITERKKAEEALRTYQFVVDHASIQIFWVSQEGEFYYVNEAACRTLGYSKQKLLSMTVTDI 754 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLT-M 558 + + + ++L Q ++ + + + + + L F +S++ + Sbjct: 755 NPDISSETWDIHWQKLLQT---QKIQTESHHQNQAGNIYPIELNANYLEFQGKAFSISFV 811 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DISE K+ + L AK++AE + KS FLA +SHE+RTPL I+G++++ + + Sbjct: 812 QDISERKRAEKALLEAKEVAESANQAKSTFLASMSHELRTPLNGILGYTQIFNHDKS--- 868 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + E I RSG +L ++ND+LD+SKIESGK+ L + + L ++ Sbjct: 869 LTEKQQEGIQIIQRSGEHLLTLINDILDLSKIESGKLELMPTDFRFSNFLKDIADLFRMR 928 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG----GQIIISTTHTS 733 A +K + + +P + AD + ++Q+ LN+LSNA+ FT G I S S Sbjct: 929 AEQKNVEFIYEPLSQLPTAVYADEKRLRQVLLNLLSNAVKFTQEGQVSFKVIYQSVPAPS 988 Query: 734 NEE----VILRVRDTGVGMTNYELEKAMKPFGQIPN-SQQIRGEGTGLGLPLAKAMVDAN 788 EE + V D G G+ +LE+ PF Q+ + S+Q+ EGTGLGLP++K +V+ Sbjct: 989 TEENKNTIRFEVEDAGQGIAPDDLERIFLPFQQVGDQSEQV--EGTGLGLPISKKLVEMM 1046 Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810 G+ + S G++ PL Sbjct: 1047 AGQLQMQSMLGVGSIFWFEIPL 1068 >gi|303246719|ref|ZP_07332997.1| Hpt sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492059|gb|EFL51937.1| Hpt sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 625 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 93/350 (26%), Positives = 168/350 (48%), Gaps = 32/350 (9%) Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 T D + ++N GIIL A LFG P + PF + L +PS Sbjct: 16 TGDALLLLNENGIILHATDAAGVLFGTPRNQLTGLPFGIPL-GASPSGT----------- 63 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKK-LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579 ++T+ +T L+ + + LP + + + D++E+K+ K +L+ A + A Sbjct: 64 ------EVTIATTSRTALMRQESLGEAGLPLTRIW---LRDVTEFKKAKTELTAAHEAAL 114 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 KS+FLA ++HEIRTP+ I+G +E+ + EY S +L Sbjct: 115 AGERAKSNFLANITHEIRTPMIGILGMAELTLATEL----TSKQREYLEMARHSAQSLLT 170 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-IL 698 ++ND++D ++IE G + L P L V EA+S+ + A +K + + F ++P+ ++ Sbjct: 171 VLNDIVDYARIEVGALELAKTPFDLFATVEEAVSVFRPLAVKKNLSLEYRFLGDVPQNLV 230 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYEL 753 D ++QI +N++ NA+ FT SG ++ + + VRDTG+G+ ++ Sbjct: 231 GDASRLRQILINLVGNAVKFTDSGSVVLAICPEPEKQSPGKVGLCFSVRDTGIGIPRDKI 290 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 F Q S R +G GLGL + + +V+ G++ + S +G++ Sbjct: 291 PAIFDSFTQADVSPARRYQGAGLGLAIVRHLVEMQGGEYGVESEEGQGSI 340 >gi|88802612|ref|ZP_01118139.1| sensory transduction histidine kinase [Polaribacter irgensii 23-P] gi|88781470|gb|EAR12648.1| sensory transduction histidine kinase [Polaribacter irgensii 23-P] Length = 907 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 88/256 (34%), Positives = 142/256 (55%), Gaps = 9/256 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I++ ++ KN+L AK+ AE+ + K FLA +SHEIRTPL IIGF++++ R Sbjct: 381 NITKREEIKNELILAKEQAEELAGFKDQFLANMSHEIRTPLNGIIGFTKIL--LRDNATK 438 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R+ N I S +++L +VND+LD+SKIE+GKM L + L V+ +S +L Sbjct: 439 KQRH--QLNAIKTSSDILLVVVNDILDLSKIEAGKMILEKTNLKLPNLVNSVLSTFELRI 496 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 EK + T F NIP+ ++ D + QI LN++ NA+ FT GG I + +E Sbjct: 497 GEKEQTLNTRFDKNIPKWLIGDTVRINQILLNLIGNALKFTAVGGTINVHLNLLHQDENK 556 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V + V DTG+G+ + +++ PF Q ++ + G+GLGL + K ++D G + Sbjct: 557 VNVEISVSDTGIGIPSDKIKNIFDPFIQSSDNTARKYGGSGLGLNIVKQLIDLMHGSISV 616 Query: 795 FSTPAKGTLIEIIFPL 810 S + G+ + PL Sbjct: 617 KSQESIGSTFTLTIPL 632 >gi|209524475|ref|ZP_03273023.1| histidine kinase [Arthrospira maxima CS-328] gi|209494933|gb|EDZ95240.1| histidine kinase [Arthrospira maxima CS-328] Length = 351 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 91/278 (32%), Positives = 142/278 (51%), Gaps = 26/278 (9%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DI++ K + +L AK AE + +S+FLA +SHE+RTPL AIIG+SE+++ Sbjct: 65 IRDITQSKLAQIELQRAKDAAESANHAQSEFLASMSHELRTPLNAIIGYSELLREDAV-D 123 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 G +I + I SG +L I+ D+LDISK+ESG M + E ++ + E +LVQ Sbjct: 124 FGYTDFIPDLDQIRASGLHLLTIIQDILDISKLESGMMTVCLENFNIATLIKEIEALVQP 183 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG---------GQ---- 724 + ++ + ++ + AD VKQ+ LN+LSNA FT +G GQ Sbjct: 184 LFPKNHNQLKVNCTPDVEGMYADRIKVKQVLLNLLSNAAKFTENGLVNLNVIYIGQLDTK 243 Query: 725 ------------IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 ++++ H V V DTG+G+T ++ K +PF + NS R E Sbjct: 244 ISAYLRENLASSVLVNDEHQLQGGVAFEVIDTGIGLTTEQMTKIFEPFERADNSTTRRYE 303 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL ++K + G + S +G+ FPL Sbjct: 304 GTGLGLSISKRFCELMGGAITVASEIGEGSTFTAYFPL 341 >gi|300025020|ref|YP_003757631.1| histidine kinase [Hyphomicrobium denitrificans ATCC 51888] gi|299526841|gb|ADJ25310.1| histidine kinase [Hyphomicrobium denitrificans ATCC 51888] Length = 390 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 97/335 (28%), Positives = 164/335 (48%), Gaps = 18/335 (5%) Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 RA+ LF Y F + L+ +TP++ L EI +L + TL + Sbjct: 62 TRAIG-LFAYAA-------FPIALDASTPALAR--LREIAALGNANSKSVETLTFWSNGR 111 Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS----DFLARVS 593 L +LR + + +H + E E ++ + +A + ++ S D LA+++ Sbjct: 112 LKALRCTVTRQTADRSGLFVLHVLDEADAETALIAPPESLAARAAATASLLDPDQLAKLA 171 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HE++TPLTAI +EV++++R G +GN RY+ YA I + LD++ LL S+ G Sbjct: 172 HELKTPLTAIAAAAEVMRDERLGAMGNARYLNYAADIHENATHALDVITSLLSESR-RQG 230 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713 + L+ V +S VQ A + + + + P ++A+ S++QI LN+L+ Sbjct: 231 TAPPRLIALDLNAIVQRTVSSVQALAQSRNLALTFRAEKSRPHVVANPTSLRQILLNLLT 290 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 NAI FTP+GG + + T ++ V L VRDTG G+ + + G ++Q+ G Sbjct: 291 NAIKFTPTGGAVQVETGCRADGRVFLAVRDTGCGIGGSAVAASASDEGA---NKQLWLSG 347 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +G+GLPL + +F I +GTL I F Sbjct: 348 SGIGLPLVHRLASEMSAEFEIEDGSDRGTLARITF 382 >gi|309792417|ref|ZP_07686883.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] gi|308225527|gb|EFO79289.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] Length = 616 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/247 (32%), Positives = 135/247 (54%), Gaps = 4/247 (1%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q+ L A K + K FLA +SHE+RTPLT IIGFSE + +G LG+ + Sbjct: 218 RQQSALLEEANTNLAKAARLKDQFLANMSHELRTPLTGIIGFSEALSQGLYGALGDAQQR 277 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ-LYANEKR 683 + D +G +L ++ND+LD+++I +G ++L PV +D+A E I L+ L+ ++K+ Sbjct: 278 AVQHVFD-NGQHLLQLINDILDLARIGAGHVDLKLGPVLVDDACGEVIDLLNGLFQSKKQ 336 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVR 742 T+ + I AD+ V+QI +N+LSNA FTP GG + + + + +EV + Sbjct: 337 QFTYTACEAGLS-IEADILRVRQILINLLSNASKFTPRGGALGLEIHYDAQRKEVQFCIW 395 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D G+G+ + +PF Q+ + GTGLGL L + +V + G+ + S +G+ Sbjct: 396 DHGIGIAANQQNMLFQPFVQLDDRLARDQPGTGLGLALVRQLVTLHGGRIEVESRVGEGS 455 Query: 803 LIEIIFP 809 + P Sbjct: 456 RFRVFLP 462 >gi|269966474|ref|ZP_06180558.1| putative histidine kinase [Vibrio alginolyticus 40B] gi|269828931|gb|EEZ83181.1| putative histidine kinase [Vibrio alginolyticus 40B] Length = 1060 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 131/241 (54%), Gaps = 8/241 (3%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q K AK A K S KS FLA +SHEIRTPL +IG SEV+ + + Sbjct: 384 QAKEDAEQAKDDAIKASKAKSSFLANMSHEIRTPLNGVIGISEVLSDTSLTATQR----D 439 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y + I+ S L+L ++ND+LD SKIESG + + + E++ + S++ A EK I Sbjct: 440 YVDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIISPKAKEKGID 499 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--V 741 ++ + + N P ++ D ++Q+ +N +SNA+ FT G ++ + T N E ++ V Sbjct: 500 VQVNISRNTPYHVMLDDHRIRQVVMNFMSNAVKFTEQGSVELSVITREIKNGEAVIEFSV 559 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +D+G+G+ + +K PF Q NS + GTGLGL ++ +V+ G+ + S KG Sbjct: 560 KDSGIGIDAQQQKKIFAPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGEIQLESEKGKG 619 Query: 802 T 802 + Sbjct: 620 S 620 >gi|218281107|ref|ZP_03487650.1| hypothetical protein EUBIFOR_00209 [Eubacterium biforme DSM 3989] gi|218217660|gb|EEC91198.1| hypothetical protein EUBIFOR_00209 [Eubacterium biforme DSM 3989] Length = 806 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 138/251 (54%), Gaps = 12/251 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I + + +K +L A AE S K++FL +SH+IRTP+ I+G+++++K Q L + Sbjct: 408 IQKERLQKEQLRKAYIQAENASKAKTNFLNNMSHDIRTPMNVILGYNQLMKKQ----LTD 463 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P ++Y I++SGNL+L I+ND+L++++IESGK L S+ + V E ++ A Sbjct: 464 PVLVDYQKKIEQSGNLLLSIINDVLNMARIESGKSVLVESSESIVDMVEEVSNVFGAMAK 523 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--HTSNE--- 735 EK I+ T ++L D VK+I +N++ NAI +TP+GG + + S E Sbjct: 524 EKEIVFDTKMDIKHKQVLCDCTKVKEILVNLIGNAIKYTPNGGHVTVDIKEFECSKEGYG 583 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +++ DTG+GM+ + F + S I GTGLG+P+ K +VD G + Sbjct: 584 TYQIQIIDTGIGMSESFIPTLFDAFTREATSDII---GTGLGMPIVKKLVDMMGGTIDVE 640 Query: 796 STPAKGTLIEI 806 S KG+ I Sbjct: 641 SVLGKGSTFTI 651 >gi|225159367|ref|ZP_03725663.1| Histidine kinase [Opitutaceae bacterium TAV2] gi|224802028|gb|EEG20304.1| Histidine kinase [Opitutaceae bacterium TAV2] Length = 678 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 139/253 (54%), Gaps = 8/253 (3%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y ++ DI+E K+++ +L+ A+ A S KS FLA +SHEIRTP+ IIG S ++ + Sbjct: 18 YVGSVVDITERKRQEQELATARDQAVHASRLKSQFLANMSHEIRTPMNGIIGMSGLLLDT 77 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 R +P E+A + +S +L ++ND+LD SKIESG++N+ L V + ++ Sbjct: 78 RL----SPEQREFAEIVQKSAEALLAVINDILDFSKIESGRLNIDEVEFDLRTVVEDTLA 133 Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH 731 L+ A +K I + F + +P L D ++QI N++ NAI FT G + ++ Sbjct: 134 LLGERAIDKEIELTCEFPSGLPTALRGDPGRIRQIITNLVGNAIKFTERGEVSVTVTRIQ 193 Query: 732 TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 +N + R VRDTG+G+ + +PF Q S + GTGLGL +++ +++ Sbjct: 194 ETNTTLHFRISVRDTGIGVADDIKPHLFQPFVQADGSATRKFGGTGLGLAISRQLIEMMG 253 Query: 790 GKFYIFSTPAKGT 802 G+ + P +G+ Sbjct: 254 GRIGFTTKPGRGS 266 >gi|37930220|gb|AAP76280.1| GacS [Pseudomonas sp. PCL1171] Length = 917 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 142/237 (59%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ +PR ++Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEM----SPRQLDYLGT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRT 688 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ Sbjct: 326 IEKSADNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSL 385 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTG 745 + + ++ D +KQI N++SNAI FT G + +I + ++ + V+DTG Sbjct: 386 VYRDTPLALVGDPLRLKQILTNLVSNAIKFTREGTIVARAMIEDEQEDSVQLRISVQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++N ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 446 IGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|254460391|ref|ZP_05073807.1| sensor protein GacS [Rhodobacterales bacterium HTCC2083] gi|206676980|gb|EDZ41467.1| sensor protein GacS [Rhodobacteraceae bacterium HTCC2083] Length = 718 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 113/382 (29%), Positives = 194/382 (50%), Gaps = 33/382 (8%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 D + +K+E+ +L + A DG A N + ++ N A +F +ED+ KP Sbjct: 66 DLSVAHQKVEVAERRLWHSIRAIRDGFAFFNADNEMVGANDAYLGVFDN-LEDM--KPGV 122 Query: 499 VFLEQNTPSVMNHYLTEILSLDLR---------QTLEKITLGSTKEEKL-----LSLRII 544 + E M LTE +D + LE+ + K + L ++I Sbjct: 123 TYPE------MLLILTEEGIVDTEDQNPIEWRAEMLERWHAPNPKPRVIKLWNGLYAKLI 176 Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 ++ P SL ++ I++ +N+L A+ AE + KS FLA +SHEIRTP+ I+ Sbjct: 177 DQRGPDGDVVSLALN-ITDTVLYENQLKKARYQAETANRAKSAFLANMSHEIRTPMNGIV 235 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G ++++ LG + + + + I SG +L I+ND+LD SKIE+ ++ L Sbjct: 236 GMADLLSET---GLGEEQRL-FVDTIRNSGEALLTIINDVLDYSKIEAERLELRPTTFDF 291 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG 723 ++ + E + L+Q A +K I + + +P +++ D ++QI NI+ NA+ FTPSG Sbjct: 292 EQCIHEVMRLLQPPARDKDIALLVDYDLFLPTQVVGDPGRIRQILTNIIGNAVKFTPSG- 350 Query: 724 QIIISTTHTSNEEVI-LRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 ++IS T T + V LRV +DTG+G+ +++ F Q+ + Q EGTGLGL + Sbjct: 351 HVLISVTGTHEDGVCDLRVTIQDTGIGIPAPKIDHIFGEFNQVDDEQSREFEGTGLGLSI 410 Query: 781 AKAMVDANMGKFYIFSTPAKGT 802 K +V+ G+ ++ S +GT Sbjct: 411 TKRLVELMGGQIWVTSENGEGT 432 >gi|258627627|ref|ZP_05722403.1| multi-sensor hybrid histidine kinase [Vibrio mimicus VM603] gi|258580070|gb|EEW05043.1| multi-sensor hybrid histidine kinase [Vibrio mimicus VM603] Length = 1586 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 113/415 (27%), Positives = 196/415 (47%), Gaps = 18/415 (4%) Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 ++ M F+ + Q+ + + E+ + ++ +K E EV + ++LE++ + I++ Sbjct: 669 AIMMVFVLMSVSIQYWLWLTSMVKQREEWNLQLQNQK-EKEVFRFKALLESSPEATLIVD 727 Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 GII N K+FGY +++ P + S + +LR ++I Sbjct: 728 TNGIIKMVNEEAEKVFGYGRDELEGYPMHRLFPHDLESARAKHAQ---WHELRPGNQRIE 784 Query: 530 LGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + +E + I + S+++ +I++ + L A AE+ + KS Sbjct: 785 IAVRSDETEFPVEISSSSVQMDDGLLISVSIRNITDRLAFEQTLKQALHDAEQATQAKSV 844 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA SHEIRTPL AI+G + ++ ++ R + + I SG +L IVND+LD+ Sbjct: 845 FLANTSHEIRTPLNAILGLTHLLSDESLTE-SQHRLV---DKIGISGKSLLGIVNDVLDL 900 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706 SKIE+ +M L P+ L E + E S+ A K + + ++P ++AD ++Q Sbjct: 901 SKIEANEMILEALPLDLREFLEEVASVFSTQAEAKNLDFKLEIGVDLPHWVIADSMRLRQ 960 Query: 707 IALNILSNAIHFTPSG-----GQIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKP 759 I N+LSNA+ FT G +II E+ I+R + DTG+G++ ++ KP Sbjct: 961 ILTNLLSNALKFTSVGHIALRAEIIDKFIWKGAEKNIVRFSITDTGIGISEEAQKRLFKP 1020 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 F Q S R GTGLGL + ++ GK + S +G+ PL S Sbjct: 1021 FSQADTSTSRRFGGTGLGLSIVHKLLGLMEGKIGVESREGQGSTFWTDMPLQTLS 1075 >gi|91223871|ref|ZP_01259135.1| putative histidine kinase [Vibrio alginolyticus 12G01] gi|91191363|gb|EAS77628.1| putative histidine kinase [Vibrio alginolyticus 12G01] Length = 1058 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 131/241 (54%), Gaps = 8/241 (3%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q K AK A K S KS FLA +SHEIRTPL +IG SEV+ + + Sbjct: 382 QAKEDAEQAKDDAIKASKAKSSFLANMSHEIRTPLNGVIGISEVLSDTSLTATQR----D 437 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y + I+ S L+L ++ND+LD SKIESG + + + E++ + S++ A EK I Sbjct: 438 YVDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIISPKAKEKGID 497 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--V 741 ++ + + N P ++ D ++Q+ +N +SNA+ FT G ++ + T N E ++ V Sbjct: 498 VQVNISRNTPYHVMLDDHRIRQVVMNFMSNAVKFTEQGSVELSVITREIKNGEAVIEFSV 557 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +D+G+G+ + +K PF Q NS + GTGLGL ++ +V+ G+ + S KG Sbjct: 558 KDSGIGIDAQQQKKIFAPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGEIQLESEKGKG 617 Query: 802 T 802 + Sbjct: 618 S 618 >gi|311069406|ref|YP_003974329.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942] gi|310869923|gb|ADP33398.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942] Length = 578 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 108/367 (29%), Positives = 185/367 (50%), Gaps = 35/367 (9%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 R E++ +L +++E G+ +I+ G I NRA +K F +LR+ + E Sbjct: 229 RTQEMQRDRLLTVIENIGSGLILIDGRGFINLVNRAYAKQFHTQPNHLLRRLYHDAFEHE 288 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 EI+ Q +E+I + TK+ KL L I I++ F M EW Sbjct: 289 ----------EII-----QLVEEIFMTETKKCKLFRLPINIERRYFEVDGVPIMGPDDEW 333 Query: 565 KQEK---NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 K + ++ KK+ + + DF+A VSHE++TP+T+I GF+E + + G L + Sbjct: 334 KGIVLVFHDMTETKKLEQ----MRKDFVANVSHELKTPITSIKGFTETLLD---GALDDR 386 Query: 622 R-YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 +E+ + I + + +V DLLD+SKIE L E + + E +L+Q A+ Sbjct: 387 EALLEFLSIILKESERLQSLVQDLLDLSKIEQQNFTLSVETFDAAKMLGEIETLLQHKAS 446 Query: 681 EKRILIRTSFANNIPR----ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 EK I F NIP+ + D+ +KQ+ LN+ +NA+ +TP G + IS + E+ Sbjct: 447 EKDI----RFELNIPKDPLYVQGDVYRLKQVFLNLANNALTYTPEHGTVTIS-AKLAEED 501 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + V DTG+G+ E+ + + F ++ + GTGLGL + K +++A+ GK + S Sbjct: 502 IQIEVADTGIGIEKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIEVKS 561 Query: 797 TPAKGTL 803 +GT+ Sbjct: 562 EQGQGTI 568 >gi|39997026|ref|NP_952977.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39983914|gb|AAR35304.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] Length = 793 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 88/262 (33%), Positives = 130/262 (49%), Gaps = 14/262 (5%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ LS AK+ A+ S KS FLA VSHEIRTP+ ++G ++ + Sbjct: 264 ELERAVADLSKAKEAADSASQSKSRFLANVSHEIRTPMNGVLGMVSLLLETDL----QAK 319 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 EYA I SG L++ ++NDLLD S+IESGK+ + P + + E ++ A +K Sbjct: 320 QREYAEIIRSSGELLMQVINDLLDFSRIESGKLKMEQLPFAARRVIEEMATIYGERARQK 379 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR- 740 + + S A +P R+L D ++Q+ N+L NA+ FT G I T S E + R Sbjct: 380 GVFLEYSMAGEVPDRLLGDRHRLRQVLGNLLDNAVKFTLKG--TITLTVRGSVEGGVCRL 437 Query: 741 ---VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V DTG+G+ L + PF Q +S R GTGLGL + + +V+ G S Sbjct: 438 SCIVSDTGIGIPQDMLPRLFHPFTQADDSNTRRFGGTGLGLAIVRHLVELMGGTVSCDSE 497 Query: 798 PAKGTLIEIIFPLY---DTSHP 816 P G++ L DT P Sbjct: 498 PGCGSVFRFTVALSVVPDTGEP 519 >gi|119776084|ref|YP_928824.1| sensory box histidine kinase/response regulator [Shewanella amazonensis SB2B] gi|119768584|gb|ABM01155.1| sensory box histidine kinase/response regulator [Shewanella amazonensis SB2B] Length = 1763 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 109/381 (28%), Positives = 184/381 (48%), Gaps = 35/381 (9%) Query: 443 NKRKMEIEVMQLCSILEATSD--GIAIINRE--GIILSTNRAVSKLFGYPVEDILRKPFT 498 +++ME E+ Q + A D GI I+N + GII N G + + RK Sbjct: 888 GRKRMETELAQSEAHFRALFDNAGIGIVNLDDRGIIKDCNGQFVSDLGISSDSLKRKQLA 947 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--------KLLSLRIIIKKLPF 550 + H L+ L Q L + GS E +L+ + +I L Sbjct: 948 DLM---------HPEDRALATGLYQALAESEQGSISGEWRMLDGDGELMWMAVIASVLEE 998 Query: 551 SS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 +++ +I+ K ++L AK+ A+ + KSDFLA +SHEIRTP+ AIIG Sbjct: 999 GDGGERSVVMSIANITRLKLLSDELMAAKEDADAANQAKSDFLANMSHEIRTPMNAIIGM 1058 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 S++ + + Y I+R+ +L I+ND+LD SKIE+GK+++ P LD Sbjct: 1059 SQLCLQTEL----DRKQRNYVEKIERASKSLLGIINDILDFSKIEAGKLDIEVVPFQLDT 1114 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQI 725 + + + + A +K++ + S A +P L D + Q+ +N+++NAI FT G++ Sbjct: 1115 ILEDLGDMFSVKAADKQLELLFSVAPGVPTHLEGDPLRLSQVLINLMNNAIKFTER-GEV 1173 Query: 726 IISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 ++S + + +E + VRD+G+G+T + K K F Q S + GTGLGL + Sbjct: 1174 MLSISELARDEDQVQLKFAVRDSGIGLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAIC 1233 Query: 782 KAMVDANMGKFYIFSTPAKGT 802 K +V+ G+ + S G+ Sbjct: 1234 KQLVELMGGEIGVDSQFGNGS 1254 >gi|119900236|ref|YP_935449.1| putative two component sensor protein [Azoarcus sp. BH72] gi|119672649|emb|CAL96563.1| putative two component sensor protein [Azoarcus sp. BH72] Length = 852 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 88/249 (35%), Positives = 133/249 (53%), Gaps = 7/249 (2%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L A++ AE S KSDF+A +SHE+RTPL I+GF+E+I++ P N ++A+ Sbjct: 604 QRLEDARRQAEDNSRMKSDFVASMSHELRTPLNGILGFAELIRDD--AP--NDEVRDHAD 659 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +SG +L +VND+LDI+KIE+G M+L L + + +L A +K + T Sbjct: 660 TIYQSGEHLLSLVNDVLDIAKIEAGHMSLESVAFDLPALLQQVANLHGTMAQQKGLAFAT 719 Query: 689 SFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 FA +P LA D ++Q+ N+L+NAI FTP+G +++ T + +I+ VRDTG G Sbjct: 720 EFAPGLPATLAGDPTRLRQVINNLLNNAIKFTPAGEVKLLARTEA--DRLIVGVRDTGPG 777 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + F Q GTGLGL L + +V G + S P +G E Sbjct: 778 IAAEMQPVIFDRFRQASTFITREHGGTGLGLALVREVVALMGGAVRLESAPGEGAYFEFW 837 Query: 808 FPLYDTSHP 816 PL + P Sbjct: 838 IPLVSPAAP 846 >gi|291288623|ref|YP_003505439.1| PAS/PAC sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] gi|290885783|gb|ADD69483.1| PAS/PAC sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] Length = 1271 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 105/363 (28%), Positives = 174/363 (47%), Gaps = 22/363 (6%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS------VMN 510 I E + D I I + +G I N A +L Y D++ F L PS ++ Sbjct: 678 IFELSRDIIGIADLDGNIHYLNSAFGELLSYSTADVINSNFRDILR---PSDIEQLEIVF 734 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 L E+ SL +++ + GS K +S ++ + YS+ D ++ K +N Sbjct: 735 QSLQELDSLVDFESMHTLPDGSIK---WISWSFTADRVN-NRIYSIG-RDATDRKVYENT 789 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L K AE+ KS+F+A +SHEIRTPL A+IGFSE++ + + + Y N I Sbjct: 790 LKDQKDKAEQAGRAKSEFMANISHEIRTPLNAVIGFSELLSARA----QDSKAASYINSI 845 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG +L ++ND+LDISK+E+ P S+ + E + + I + Sbjct: 846 KTSGKALLTLINDILDISKLEAAATEPVLAPASIKMLLEEMVRIFGYRTEHTDIKLGYFI 905 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTGV 746 A + P+ ++ D+ ++Q+ LN++ NA+ FT G I N+E + + V+DTG+ Sbjct: 906 AADTPKTMMLDISRLRQVLLNLIGNAVKFTERGEVSISVRCEAVNDERVDLYISVKDTGI 965 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ E+E + F Q + GTGLGL ++ +VD G+ + S G+ + Sbjct: 966 GIPKEEMEDIFQAFRQRAGHNINKYGGTGLGLSISSKLVDMMGGEIRVESKVGIGSTFTV 1025 Query: 807 IFP 809 I P Sbjct: 1026 ILP 1028 >gi|126725013|ref|ZP_01740856.1| sensor histidine kinase/response regulator [Rhodobacterales bacterium HTCC2150] gi|126706177|gb|EBA05267.1| sensor histidine kinase/response regulator [Rhodobacterales bacterium HTCC2150] Length = 767 Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 85/266 (31%), Positives = 142/266 (53%), Gaps = 9/266 (3%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 FS+ ++E + + +L+ A A+ + KS+FLA +SHEIRTP+ +IG +++ Sbjct: 210 FSASVDALEFSLTERDEREAELNAAMIKADAANKAKSEFLANMSHEIRTPMNGVIGMAQL 269 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + N YAN I SG+ +++I+ND+LD SKI++GKM L P L++ Sbjct: 270 MLETDLSDDQNL----YANTIQSSGSALVEIINDILDYSKIDAGKMTLKNAPFDLEQVAQ 325 Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 + L+ A K + + F+ ++P+ + D V+QI +NIL NAI FT G Sbjct: 326 DCSPLMSAQALHKGLEVVLDFSQDLPKGYIGDSGRVRQILMNILGNAIKFTEKGSVEFAV 385 Query: 729 TTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 S +E+ L ++DTG+G+ +L+ PF Q ++ + +GTGLGL + MVD Sbjct: 386 NGIQSGDEIALELSIKDTGIGIPQNKLQSIFVPFEQAEGAKNRQFDGTGLGLAIVNHMVD 445 Query: 787 ANMGKFYIFSTPAKGT--LIEIIFPL 810 G + S KG+ +++I P+ Sbjct: 446 LMGGSISVESEIGKGSVFILKIALPI 471 >gi|189346602|ref|YP_001943131.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245] gi|189340749|gb|ACD90152.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245] Length = 887 Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 107/354 (30%), Positives = 173/354 (48%), Gaps = 31/354 (8%) Query: 463 DGIAIINREGIILSTNRAVSKLF-------GYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 DG+ +I++E I N A + G P ILR+ ++ + H + Sbjct: 254 DGVFVIDQEERITDCNNAALNILEITKNDIGKPAAKILRQWPELYGLIIEAREIKHADLK 313 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 LDL + L + L+ RII+ + +I+ KQ + L + Sbjct: 314 KQKLDLVSWFDIDILALPDKNGCLTGRIIV------------LRNITSRKQIEYDLIATR 361 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 + AE + KSDF+A +SHEIRTPL +IGFS ++ + Y N ++ S Sbjct: 362 EKAEAANHAKSDFIANMSHEIRTPLNGLIGFSSLLMKTTLDDVQ----FHYINTVNNSAK 417 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L ++ND+LD+SKIE+GK+ L+ E +SL E E I + A+ K + + +++P Sbjct: 418 QLLGLINDILDLSKIEAGKLELYNEMISLQELAEEVIDMTAFTAHSKNLELLLDIPSSLP 477 Query: 696 R-ILADLRSVKQIALNILSNAIHFTPSGGQI--IISTTHTSNEE----VILRVRDTGVGM 748 LAD +KQI +N+L NA+ FT SGG+I I T + N+ I VRDTG+G+ Sbjct: 478 ESALADPVCLKQILINLLGNAVKFT-SGGEIELKIETVPSDNDPDYLVFIFSVRDTGIGI 536 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + +K + F Q S + GTGLGL ++ ++ + S+P +G+ Sbjct: 537 SPENRKKIFEAFSQEDMSTTRKYGGTGLGLTISNKLLLLMGSCLQLESSPGQGS 590 >gi|307721459|ref|YP_003892599.1| Hpt sensor hybrid histidine kinase [Sulfurimonas autotrophica DSM 16294] gi|306979552|gb|ADN09587.1| Hpt sensor hybrid histidine kinase [Sulfurimonas autotrophica DSM 16294] Length = 764 Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 134/242 (55%), Gaps = 6/242 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 KL A++ A + + K FL+ +SHEIRTPL AI+GF ++ ++ + ++ Y + Sbjct: 142 KLIDARQEALRAAQAKEYFLSNMSHEIRTPLNAILGFVNLLMDEDI----SNKHRNYLDI 197 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG +L I+ND+LD SK+ SG+ N+ + SL E +S + L AN K I I + Sbjct: 198 ILNSGENLLSIINDILDFSKLRSGEFNIEAKVFSLHEELSHTMELFVASANSKDITITSF 257 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 IP+ + D+ +KQI N LSNAI FTP GG I + + N+++ + V D GVG+ Sbjct: 258 IDPRIPKELFGDVLRIKQIVSNFLSNAIKFTPVGGVIKVEAS-CHNQQLTISVNDNGVGI 316 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L+ F Q +S+ EG+GLGL ++ + + GK ++ S +G+ + Sbjct: 317 NKEDLQNIFVAFTQARSSEHDNKEGSGLGLCISHQLAELMHGKVHVNSKVGEGSTFWLDI 376 Query: 809 PL 810 P+ Sbjct: 377 PV 378 >gi|21230299|ref|NP_636216.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769707|ref|YP_244469.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. 8004] gi|188992922|ref|YP_001904932.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. B100] gi|21111848|gb|AAM40140.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575039|gb|AAY50449.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. 8004] gi|167734682|emb|CAP52892.1| two-component system sensor protein [Xanthomonas campestris pv. campestris] Length = 636 Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 142/229 (62%), Gaps = 6/229 (2%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 N+ A++ AE + K++FL+R SHE+RTPL AI+G+++V++ L P + + Sbjct: 260 NEAQLARREAETANRAKTEFLSRSSHELRTPLNAILGYAQVLEMD----LPEPGHRRHLQ 315 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 +I +G +L ++ +LLDI++IE+ +++L EP+++ AV EA+ L+ A++ I ++ Sbjct: 316 HILGAGRHLLGLITELLDIARIEADQLDLSPEPIAVRAAVHEALGLIAPDADKHGISLQP 375 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + + AD + ++Q+ LN+LSNA+ F +GGQ+ +S ++V + V D G G+ Sbjct: 376 PAIDGPWTVRADAQRLRQVLLNLLSNAVKFNRTGGQVQVS-AQPDGDQVRIVVADQGAGL 434 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 T ++E+ PF ++ +++ EGTGLGL L+K +++A G+ + S+ Sbjct: 435 TAAQIERLFTPFERL-GAERSAVEGTGLGLALSKRLIEAMGGQIGVDSS 482 >gi|332532401|ref|ZP_08408279.1| sensor histidine kinase/response regulator [Pseudoalteromonas haloplanktis ANT/505] gi|332038044|gb|EGI74491.1| sensor histidine kinase/response regulator [Pseudoalteromonas haloplanktis ANT/505] Length = 936 Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 85/263 (32%), Positives = 142/263 (53%), Gaps = 8/263 (3%) Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 S + T+ DI E + + L AK AE + KS F+A +SHEIRTPL A+IG ++++ Sbjct: 379 SSIAATLVDIQERIESEQILLEAKHQAETLAESKSRFMANISHEIRTPLNAVIGSADILH 438 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + + Y I S + +L +++D+L S+ E+ + L +P S+D + EA Sbjct: 439 HTGL----TSEQMRYTQMIKTSSDALLSVLDDVLTYSRFEAQAITLDNQPFSIDTCIEEA 494 Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIIST 729 I ++ A +KR+ + F ++P +++ D V+QI +N+L+NAI FT G + + Sbjct: 495 IDIITQSALQKRLEVIFDFYPDVPAQVIGDHARVRQIVINLLANAIKFTQHGVITVTVRC 554 Query: 730 THT--SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 TH +N + L V+DTG+G+ ++E PF Q NS + G+GLGL + K + D Sbjct: 555 THIKGNNLNLHLSVKDTGMGIAKNKIESMFMPFIQSDNSITRKHGGSGLGLAICKQICDV 614 Query: 788 NMGKFYIFSTPAKGTLIEIIFPL 810 G + S KG+ + +PL Sbjct: 615 VGGDISVSSELNKGSEFIVNYPL 637 >gi|238760599|ref|ZP_04621729.1| hypothetical protein yaldo0001_37760 [Yersinia aldovae ATCC 35236] gi|238701186|gb|EEP93773.1| hypothetical protein yaldo0001_37760 [Yersinia aldovae ATCC 35236] Length = 1193 Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 105/350 (30%), Positives = 177/350 (50%), Gaps = 22/350 (6%) Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 +++ EG ILS N+A + F +++ P T ++ ++N LT++ +L ++ + Sbjct: 583 VVDLEGNILSHNQAWDEFFIQETKNLATMPLTS--REHPLFIINFALTQVRTLPVKSAPQ 640 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC------YSLTMHDISEWKQEKNKLSHAKKIAEK 580 + L + E+++ I+ + PF + D++E++ +LS A++ AE+ Sbjct: 641 RYRLSNGVEDRV----ILHQSTPFKRSDGELLGLICSWQDMTEYEFLIKELSAARENAEQ 696 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 + KS FLA +SHEIRTPL+AIIG E+ + G+P E S + ++ + Sbjct: 697 ANRTKSTFLATMSHEIRTPLSAIIGLLELAVTNK----GHPGTEESIQVAYESAHTLMGL 752 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILA 699 V D+LDI+KIESGK+ L E + +E S I + A +K + + P I Sbjct: 753 VGDILDIAKIESGKLELTLEWMKFNELFSPVIPVFMGLARQKHLELTCDIDVLHPEEIYV 812 Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKA 756 D + QI N++SNAI FT G I + S+++V+L V DTGVG+ + + Sbjct: 813 DPIRLHQIMFNLVSNAIKFTEQGSVDIQVKCLSGSDQQVMLELVVNDTGVGIPQDDQPQI 872 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 P+ Q + + GTGLGL + +V G +FS P +GT I + Sbjct: 873 FSPYKQSDAGK--KQVGTGLGLSICAQLVSMMGGTIELFSQPGRGTRITV 920 >gi|229589677|ref|YP_002871796.1| putative two-component system sensor kinase [Pseudomonas fluorescens SBW25] gi|229361543|emb|CAY48419.1| putative two-component system, sensor kinase [Pseudomonas fluorescens SBW25] Length = 1206 Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 108/379 (28%), Positives = 193/379 (50%), Gaps = 33/379 (8%) Query: 452 MQLCSIL-EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 M+ S+L + T I + +R+G +++ N A +FG+ +ED++ K V + P Sbjct: 577 MRFMSVLIDGTPHPIYVRDRQGRLMACNNAYLDVFGFKLEDVIGKT-VVETDTGNPPQAQ 635 Query: 511 HYLTEILSL------DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----- 559 + + LSL + + K+ G L I LP+ + Sbjct: 636 SFHADYLSLMERGEPQIHDRVLKVPGGGV-------LTIYQWMLPYRDSNGNVVGMIAGW 688 Query: 560 -DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KNQRFGP 617 D+SE ++ +L AK+ A+ + K+ FLA +SHEIRTP+ A+IG E+ KN G Sbjct: 689 VDVSERQRLLGQLQEAKEEADAANRAKTTFLATMSHEIRTPMNAVIGMIELAQKNAEQGR 748 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + + +E A+ RS +L+++ D+LDI++IE+G ++L P +L E ++ + + Sbjct: 749 V-DQDALEVASMASRS---MLELIGDILDIARIETGHLSLTLAPANLHEMLASVARVFEG 804 Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---S 733 A +K +L+ I R +L D KQ+ N+L NAI FT + GQ+ + T + Sbjct: 805 LARDKGLLLHVELDPMIDRSVLIDPMRFKQVVSNLLGNAIKFTAT-GQVRLGAQCTPALA 863 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 ++ + LR V DTG+G++ + ++ PF Q N+ Q G+GLGL +++ + + G+ Sbjct: 864 SDPLNLRLYVEDTGIGISAEDQQRLFNPFIQGSNNDQSARSGSGLGLVISRNLCEMMGGQ 923 Query: 792 FYIFSTPAKGTLIEIIFPL 810 ++ S KGT +++ L Sbjct: 924 LHLSSVLGKGTRVDVTLAL 942 >gi|260769480|ref|ZP_05878413.1| signal transduction histidine kinase-like protein [Vibrio furnissii CIP 102972] gi|260614818|gb|EEX40004.1| signal transduction histidine kinase-like protein [Vibrio furnissii CIP 102972] Length = 1268 Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 115/377 (30%), Positives = 183/377 (48%), Gaps = 50/377 (13%) Query: 461 TSDGIAII--NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI-- 516 +S G AII + +GII N + KL GY +++ TPS H + E+ Sbjct: 389 SSAGYAIIASDLDGIITVFNPSAEKLLGYTAAEMVGV--------CTPSRF-HLMEEVAT 439 Query: 517 ----LSLDLRQTLE--------KITLGST---------KEEKLLSLRIIIKKL------P 549 LS +L +T+ K LG K + +R+I+ L P Sbjct: 440 RAKQLSQELGETIHPGFDVFVAKARLGFVDITRWTYVHKNGHHIPIRLIVSCLLDDHQEP 499 Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 Y +D++E Q + +L+ AK++AE+ + KSDFLA +SHE+RTP+ AI+G ++ Sbjct: 500 VG--YLGIAYDLTETLQREKELAEAKELAEQANRAKSDFLANMSHELRTPMNAILGLLQI 557 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 +N N + +Y N + +L ++ND+LD SK+E+GKM + +P SL E + Sbjct: 558 AQNTDL----NKQQRDYLNKTQNAAQSLLVLLNDILDFSKVEAGKMEIEQQPFSLPELMH 613 Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIII 727 E L+ K + I ++P ++ D ++QI LN+ NAI FT +G ++ I Sbjct: 614 ETGILLSSNLQHKHLEIIYQIDEDVPTYLIGDSLRLRQILLNLAGNAIKFTEAGEVKVSI 673 Query: 728 STTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 T + + +LR V DTG+GMT + + F Q +S R GTGLGL + K +V Sbjct: 674 QTESHNGDRCVLRITVSDTGIGMTEEQQRIVFQGFSQAESSISRRYGGTGLGLSIVKHLV 733 Query: 786 DANMGKFYIFSTPAKGT 802 G + S G+ Sbjct: 734 GLMEGSVQVKSEQGVGS 750 >gi|160894573|ref|ZP_02075349.1| hypothetical protein CLOL250_02125 [Clostridium sp. L2-50] gi|156863884|gb|EDO57315.1| hypothetical protein CLOL250_02125 [Clostridium sp. L2-50] Length = 1121 Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 88/253 (34%), Positives = 140/253 (55%), Gaps = 10/253 (3%) Query: 555 SLTMHDISEW-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE-VIKN 612 SL + + W K+ + +L + AE+ ++ +S FLA +SHEIRTPL AI+G +E V++ Sbjct: 479 SLMLLVVIAWNKRLQIRLKQNAQEAEEAANSESAFLANISHEIRTPLNAILGMNELVLRE 538 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 R P EYA YI SG +L I++D+LD+SKIESGK+++ E SL + + Sbjct: 539 SR-----QPHIKEYAMYIKNSGKTLLTIISDILDLSKIESGKVDIIIERYSLSSLIEDVE 593 Query: 673 SLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG--GQIIIST 729 +Q EK + S + + L D +KQI +N+L+NA+ +T G I Sbjct: 594 RSIQKRVMEKNLQFNISVSPYMHEYLQGDEVRIKQIIMNLLTNAVKYTEKGCISLRITGE 653 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + + +++ + V DTG+GM + +L K F + + EGTGLGLP+ K+++DA Sbjct: 654 SQDTIQKLFIEVADTGIGMRDEDLGKLFTKFERFDLKRNRSVEGTGLGLPIVKSLLDAMG 713 Query: 790 GKFYIFSTPAKGT 802 G + S KG+ Sbjct: 714 GTIQVQSVYGKGS 726 >gi|167032264|ref|YP_001667495.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1] gi|166858752|gb|ABY97159.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1] Length = 917 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 142/237 (59%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y + Sbjct: 271 ELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEM----TPRQLDYLST 326 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ + + Sbjct: 327 IEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSL 386 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTG 745 + P ++ D +KQI N++SNAI FT G ++ + H + ++ + V+DTG Sbjct: 387 IYRDTPSSLIGDPLRLKQILTNLVSNAIKFTREGTIVVRAMLDDEHEDHAQLRISVQDTG 446 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 447 IGLSPQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 503 >gi|325274858|ref|ZP_08140873.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. TJI-51] gi|324100006|gb|EGB97837.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. TJI-51] Length = 917 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 142/237 (59%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y + Sbjct: 271 ELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEM----TPRQLDYLST 326 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRT 688 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ Sbjct: 327 IEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSL 386 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTG 745 + + ++ D +KQI N++SNAI FT G ++ + H + ++ + V+DTG Sbjct: 387 VYRDTPTSLVGDPLRLKQILTNLVSNAIKFTREGTIVVRAMLDDEHEDHAQLRISVQDTG 446 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 447 IGLSPQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 503 >gi|148251707|ref|YP_001236292.1| putative sensor histidine kinase [Bradyrhizobium sp. BTAi1] gi|146403880|gb|ABQ32386.1| Putative sensor histidine kinase [Bradyrhizobium sp. BTAi1] Length = 835 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 102/362 (28%), Positives = 175/362 (48%), Gaps = 23/362 (6%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 L++ ++G+A+ G + N A +K++ + + P +E S+ + Sbjct: 476 LDSLAEGVAVFGSNGRVELFNPAFAKMWRLSPDQLREHPHIDTVESWCRSLYDD------ 529 Query: 518 SLDLRQTLEKITLGSTKEEKL-LSLRIIIKKLPFSSCYS---------LTMHDISEWKQE 567 ++ R E IT + E +L ++L++ K C S LT DI++ + Sbjct: 530 AVAWRTIREAIT---SIENRLDIALKLERKDGSVLDCMSRPLPDGATMLTFQDITDTENV 586 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + L + + E K DF+ VS+E+R PLT IIGF+ + + GPL P+ EY Sbjct: 587 ERALRESNEALEAAGQMKIDFVHHVSYELRAPLTTIIGFAHFLSDPSTGPL-TPKQAEYL 645 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 +Y+ +S N +L + N++LD++ I++G M L PV +A+ A VQ RI ++ Sbjct: 646 DYVTKSTNALLALTNNILDLATIDAGAMKLELGPVDAAKAIEAAAEGVQDRLATDRIRLK 705 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 N+ + D R V Q+ N+L+NA+ F+P +++S T + V V D+G G Sbjct: 706 VQVDPNVGTFVGDERRVVQVLYNLLANAVGFSPQDSTVLVSARRT-DHSVAFSVTDSGPG 764 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + ++ F + SQ R G GLGL L ++ V+ + GK + S KGT + Sbjct: 765 IPPDLKDQMFDWF--VSRSQGSRHRGAGLGLSLVRSFVELHGGKVRMDSVVGKGTTVTCD 822 Query: 808 FP 809 FP Sbjct: 823 FP 824 >gi|299133218|ref|ZP_07026413.1| multi-sensor hybrid histidine kinase [Afipia sp. 1NLS2] gi|298593355|gb|EFI53555.1| multi-sensor hybrid histidine kinase [Afipia sp. 1NLS2] Length = 745 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 86/264 (32%), Positives = 134/264 (50%), Gaps = 7/264 (2%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + D+++ + ++ L A+ A + KS FLA SHEIRTPL I+G S ++ + Sbjct: 207 FQCVGRDVTDRTESEHALGLARDHAVSANRAKSKFLAVASHEIRTPLNGILGMSTLLLDT 266 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 PL NP YA + SG ++ +V +LLD SKIE+GK+NL P L + E Sbjct: 267 ---PL-NPEQAAYAKAVKTSGEALMSLVEELLDFSKIEAGKINLEHRPFHLAGMIEEITE 322 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 L+ A ++I I +P + D ++Q+ LN+ SNA+ FT GG +I Sbjct: 323 LLAPRAQARQIEIACYIDERLPLEVAGDAARLRQVLLNLASNAVKFTSRGGVALIVEPGI 382 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 E+ VRDTG+G+ ++ + F Q + G+GLGL +++ +V G+ Sbjct: 383 WPNEISFMVRDTGIGIAPDAQQRIFREFEQADEHIARQYGGSGLGLAISERIVRRMGGRI 442 Query: 793 YIFSTPAKGTLIEIIFPLY--DTS 814 + S P +GT E+ PL DTS Sbjct: 443 ALESVPGEGTTFEVSIPLQASDTS 466 >gi|317483933|ref|ZP_07942870.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] gi|316924807|gb|EFV45956.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] Length = 858 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 112/377 (29%), Positives = 187/377 (49%), Gaps = 25/377 (6%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R+++ ++ E L +IL D I + GI N+A G ++I+ K V Sbjct: 334 RLSQERLLKESALLKTILNTVPDLIFYKDMNGIYKGCNKAFGAFIGKSEQEIIGKD-DVE 392 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL---SLRI---IIKKLPFSSCY 554 L Q + + ++ + L + +R L+ + +EE++L RI IK L +S Sbjct: 393 LFQLSGNAAQKFIEDDLQV-MRGKLDTLI----REEEVLYPDGKRIYLETIKTLYYSEDN 447 Query: 555 S-LTMHDISE----WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 + M IS K+ + + A + A + S KS+F+AR+SHEIRTPL AIIG + + Sbjct: 448 APFGMVGISRNIQLRKETEKAYAEAIQRAHEASKAKSEFVARISHEIRTPLNAIIGMNYL 507 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 +K P+ Y ++ S +L I+ND+LD SKIESGK+ + +S+++ V Sbjct: 508 LKQSCTDPVQES----YLRKMELSAKNLLSIINDVLDFSKIESGKLEIEKNTLSIEKLVR 563 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QI 725 + +S+ + A T IP +L D + QI LN++SNA+ F+ G ++ Sbjct: 564 DVVSINEPKAKAANESFETHIDPGIPDVLIGDTLRISQIMLNLVSNAVKFSHHGTIKIEV 623 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + H N ++ VRD G+GM+ +L+K PF Q S + GTGLGL + K +V Sbjct: 624 LCERVHGENVTLLFSVRDQGIGMSQQQLDKLFIPFTQADGSTTRKYGGTGLGLSICKMLV 683 Query: 786 DANMGKFYIFSTPAKGT 802 + G+ + + G+ Sbjct: 684 ELMHGEIWAVTEEGVGS 700 >gi|68299595|dbj|BAE02741.1| two-component regulatory system sensor kinase GacS [Pseudomonas fluorescens] Length = 917 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 142/237 (59%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ +PR ++Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEM----SPRQLDYLGT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRT 688 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ Sbjct: 326 IEKSADNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSL 385 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTG 745 + + ++ D +KQI N++SNAI FT G + +I + ++ + V+DTG Sbjct: 386 VYRDTPLALVGDPLRLKQILTNLVSNAIKFTREGTIVARAMIEDEQEDSVQLRISVQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++N ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 446 IGLSNQDVRALFQAFSQADNSLSRQPVGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|325925062|ref|ZP_08186484.1| PAS domain S-box [Xanthomonas perforans 91-118] gi|325544574|gb|EGD15935.1| PAS domain S-box [Xanthomonas perforans 91-118] Length = 1364 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 104/385 (27%), Positives = 179/385 (46%), Gaps = 27/385 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLT 514 +IL I I+ G + N A KL GY +++ R+ + F+E H L Sbjct: 497 AILAHAGYAIIAIDSSGFVTLFNPAAEKLLGYSAAEVIGRRKASQFVEPEELQERAHMLA 556 Query: 515 EILSLDLRQTLEKI----TLGSTKEEKLLSLRIIIKKLP----FSSC---------YSLT 557 E + TLE I +LG + + + ++LP S+ Y Sbjct: 557 EQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGV 616 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 D++E K + +L A A+ + KSDFLA +SHEIRTP+ AI+G +++ Sbjct: 617 AVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPG 676 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + IDRS +L+I+ND+LD SKIE+G+++L P L++ L++ Sbjct: 677 AAQ----DMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRS 732 Query: 678 YANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE- 735 + K + +I + +L D + Q+ +N++ NAI FT G ++ S + Sbjct: 733 SLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDP 792 Query: 736 ---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 +++ VRDTG+G++ + PF Q S R G+GLGL +++ +V+ G+ Sbjct: 793 NKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGEL 852 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHPH 817 + S P +G+ + L ++ P Sbjct: 853 EVESVPGRGSEFYFVVTLEKSAPPQ 877 >gi|260364062|ref|ZP_05776785.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] gi|260879934|ref|ZP_05892289.1| histidine kinase [Vibrio parahaemolyticus AN-5034] gi|260894610|ref|ZP_05903106.1| histidine kinase [Vibrio parahaemolyticus Peru-466] gi|308086459|gb|EFO36154.1| histidine kinase [Vibrio parahaemolyticus Peru-466] gi|308091851|gb|EFO41546.1| histidine kinase [Vibrio parahaemolyticus AN-5034] gi|308114097|gb|EFO51637.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] Length = 878 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 82/248 (33%), Positives = 135/248 (54%), Gaps = 11/248 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + E +++ +++ HAK+ A + KS FLA +SHEIRTPL I+G +E++ + Sbjct: 355 VEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSEL----S 410 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P E + ID S + +L ++ND+LD+SKIESG++ L + E V +++ L Q A Sbjct: 411 PHQQEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILFQSKAT 470 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 K++ + S NIP R++ D +KQI N++SNA+ FT G I++ ++ E Sbjct: 471 SKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQ-GYILVDVSYEEALEQGR 529 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + ++D+G+G+ +L +PF Q + GTGLGL + + +V GK Sbjct: 530 GSLTFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGKLVA 589 Query: 795 FSTPAKGT 802 ST GT Sbjct: 590 TSTKGVGT 597 >gi|163739340|ref|ZP_02146751.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis BS107] gi|161387410|gb|EDQ11768.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis BS107] Length = 754 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 142/251 (56%), Gaps = 7/251 (2%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++ KQ + +L A+ AE+ + KS+FLA +SHEIRTP+ +IG +++++ + Sbjct: 354 RDVTAAKQYEQQLKDARIAAEEGARVKSEFLATMSHEIRTPMNGVIGMAQMLERTQL--- 410 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + YA+ I S +L ++ND+LD+SK+++G++ L L + + L + Sbjct: 411 -DEEQKLYADTILGSARTLLSLINDVLDLSKMDAGEVILSEVDFDLPACFQQTLQLFEPQ 469 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A EK I + + A ++PRI+ D R ++Q+ LN++ NA+ FT +GG + TT + + Sbjct: 470 AQEKGITLDLNIAPDVPRIINGDDRRLRQVLLNLVGNAVKFTDTGGVGVAVTTSRVGDRL 529 Query: 738 ILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 LR V DTG+G+ + ++ + F Q + R GTGLGL +++ + +A G+ + Sbjct: 530 RLRFSVTDTGIGIAKEKQDQIFERFSQADAAITRRFGGTGLGLTISRLLCEAMGGEIDVT 589 Query: 796 STPAKGTLIEI 806 S P KG+ + Sbjct: 590 SDPGKGSCFSV 600 >gi|332703162|ref|ZP_08423250.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553311|gb|EGJ50355.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 657 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 84/266 (31%), Positives = 145/266 (54%), Gaps = 19/266 (7%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 +++I+ K + +L AK +AE+ + KS FLA +SHEIRTP+ ++G E+ +R Sbjct: 246 LNEITALKVTEEELRQAKDLAEEANQAKSAFLAAMSHEIRTPMNGVLGMIELALMRR--- 302 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + +Y + +SG +L I+ND+LD+SKIE+G + + +P + + + + L Sbjct: 303 -PTSKVKQYLDLAKQSGQALLLIINDILDLSKIEAGMITIEEQPFNPRAMLESLFATMSL 361 Query: 678 YANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A +K + R++ A+ + + L D ++Q+ NI+ NAI FT G+I +S E+ Sbjct: 362 AAEQKGLEFRSNVASALSSMALGDEGRLRQVLFNIIGNAIKFTEQ-GEIAVSIDVPRGEK 420 Query: 737 ------------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 ++ +RDTGVG+ + LEK F Q+ N + GTGLGL +++ + Sbjct: 421 WRDICGAKGSFCLLASIRDTGVGIPAHMLEKIFDSFTQV-NGRNYEFGGTGLGLAISRQL 479 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810 V+ GK ++ S P KG+L + PL Sbjct: 480 VEMMGGKIWVESEPGKGSLFTFVVPL 505 >gi|78048227|ref|YP_364402.1| two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036657|emb|CAJ24348.1| two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 1364 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 104/385 (27%), Positives = 179/385 (46%), Gaps = 27/385 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLT 514 +IL I I+ G + N A KL GY +++ R+ + F+E H L Sbjct: 497 AILAHAGYAIIAIDSSGFVTLFNPAAEKLLGYSAAEVIGRRKASQFVEPEELQERAHMLA 556 Query: 515 EILSLDLRQTLEKI----TLGSTKEEKLLSLRIIIKKLP----FSSC---------YSLT 557 E + TLE I +LG + + + ++LP S+ Y Sbjct: 557 EQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGV 616 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 D++E K + +L A A+ + KSDFLA +SHEIRTP+ AI+G +++ Sbjct: 617 AVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPG 676 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + IDRS +L+I+ND+LD SKIE+G+++L P L++ L++ Sbjct: 677 AAQ----DMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRS 732 Query: 678 YANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE- 735 + K + +I + +L D + Q+ +N++ NAI FT G ++ S + Sbjct: 733 SLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDP 792 Query: 736 ---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 +++ VRDTG+G++ + PF Q S R G+GLGL +++ +V+ G+ Sbjct: 793 NKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGEL 852 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHPH 817 + S P +G+ + L ++ P Sbjct: 853 EVESVPGRGSEFYFVVTLEKSAPPQ 877 >gi|330977654|gb|EGH77557.1| PAS protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 782 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 108/366 (29%), Positives = 185/366 (50%), Gaps = 25/366 (6%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL-- 513 +++E T I + +REG++ N + ++F EDI+ K T + N + Sbjct: 225 ALVEGTPHPIYVRDREGMLRMCNDSYLRVFSAQREDIIGKSATEGVLGNAFEAREYAADY 284 Query: 514 TEILSLDLRQTLEK-ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH------DISEWKQ 566 +++ + L++ + +G + L I LPF DISE +Q Sbjct: 285 QRVMASNTALILDRPLRIGDRQ------LTIYHWILPFRDSLGEVQGIIGGWIDISERRQ 338 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPLGNPRYIE 625 L AK+ A+ S KS FLA +SHEIRTP+ A+IG E+ +K G L + IE Sbjct: 339 LIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHGEL-DRSAIE 397 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A S N +LD++ D+LDI++IESG+++L+ E +L V + + A +K + Sbjct: 398 VAYS---SANDLLDLIGDILDIARIESGRLSLNPERANLRRLVESVLRVFDGLARQKDLE 454 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI---LR 740 + + I +L D KQI N++SNAI FTP G ++++ + N +++ + Sbjct: 455 LVLELDSRISADVLIDPLRFKQILSNLVSNAIKFTPMGRIKVVLQAAESPNPQLLHLHIT 514 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+D+G+G++ + ++ +PF Q N+ Q+ G GLGL + + + G ++STP Sbjct: 515 VQDSGIGISVEDQQRLFEPFAQADNTGQMARTGAGLGLVICRNLCMMMGGNLSLYSTPGH 574 Query: 801 GTLIEI 806 GT I + Sbjct: 575 GTRISM 580 >gi|315182010|gb|ADT88923.1| signal transduction histidine kinase-like protein [Vibrio furnissii NCTC 11218] Length = 1268 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 115/377 (30%), Positives = 182/377 (48%), Gaps = 50/377 (13%) Query: 461 TSDGIAII--NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI-- 516 +S G AII + +GII N + KL GY +++ TPS H + E+ Sbjct: 389 SSAGYAIIASDLDGIITVFNPSAEKLLGYTAAEMVGV--------CTPSRF-HLMEEVAT 439 Query: 517 ----LSLDLRQTLE--------KITLGST---------KEEKLLSLRIIIKKL------P 549 LS +L +T+ K LG K + +R+I+ L P Sbjct: 440 RAKQLSQELGETIHPGFDVFVAKARLGFVDITRWTYVHKNGHHIPIRLIVSCLLDDHQEP 499 Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 Y +D++E Q + +L+ AK++AE+ + KSDFLA +SHE+RTP+ AI+G ++ Sbjct: 500 VG--YLGIAYDLTETLQREKELAEAKELAEQANRAKSDFLANMSHELRTPMNAILGLLQI 557 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 +N N + +Y N + +L ++ND+LD SK+E+GKM + +P SL E + Sbjct: 558 AQNTDL----NKQQRDYLNKTQNAAQSLLVLLNDILDFSKVEAGKMEIEQQPFSLPELMH 613 Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIII 727 E L+ K + I ++P ++ D ++QI LN+ NAI FT +G ++ I Sbjct: 614 ETGILLSSNLQHKHLEIIYQIDEDVPTYLIGDSLRLRQILLNLAGNAIKFTEAGEVKVSI 673 Query: 728 STTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 T + +LR V DTG+GMT + + F Q +S R GTGLGL + K +V Sbjct: 674 QTESHDGDRCVLRITVSDTGIGMTEEQQRIVFQGFSQAESSISRRYGGTGLGLSIVKHLV 733 Query: 786 DANMGKFYIFSTPAKGT 802 G + S G+ Sbjct: 734 GLMEGSVQVKSKQGVGS 750 >gi|28901084|ref|NP_800739.1| hypothetical protein VPA1229 [Vibrio parahaemolyticus RIMD 2210633] gi|28809597|dbj|BAC62572.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] Length = 882 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 82/248 (33%), Positives = 135/248 (54%), Gaps = 11/248 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + E +++ +++ HAK+ A + KS FLA +SHEIRTPL I+G +E++ + Sbjct: 359 VEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSEL----S 414 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P E + ID S + +L ++ND+LD+SKIESG++ L + E V +++ L Q A Sbjct: 415 PHQQEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILFQSKAT 474 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 K++ + S NIP R++ D +KQI N++SNA+ FT G I++ ++ E Sbjct: 475 SKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQ-GYILVDVSYEEALEQGR 533 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + ++D+G+G+ +L +PF Q + GTGLGL + + +V GK Sbjct: 534 GSLTFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGKLVA 593 Query: 795 FSTPAKGT 802 ST GT Sbjct: 594 TSTKGVGT 601 >gi|116331277|ref|YP_800995.1| sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124966|gb|ABJ76237.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 1023 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 93/264 (35%), Positives = 153/264 (57%), Gaps = 12/264 (4%) Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II +K F S + H+I+E K ++ L AK+ AE S K+DFLA +SHEIRTPL Sbjct: 473 IISQKRVFLSVW----HEITERKVYEDSLKRAKESAEAASKAKTDFLAMMSHEIRTPLNG 528 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 +IG +++ G EY + I SG +L ++ND+LD+S+IESG++ L +PV Sbjct: 529 VIGTVSLLEGTSLGA----EQREYLDIIKSSGQNLLILLNDILDLSRIESGQLTLEMQPV 584 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721 SL + SE I+L + A EK ++I S ++++P I++D ++QI N+L N+I FT Sbjct: 585 SLKKLTSEVINLFRPMAEEKGLVIEFSISSSVPNWIISDPYRLRQILTNLLGNSIKFTEK 644 Query: 722 GGQII-ISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 G ++ + N + +I V+DTG+G+ +LE + F Q+ +S + G+GLGL Sbjct: 645 GKVLLKVEAEKFPNNKFRLIFHVKDTGIGIAEEKLELLFRAFSQVDSSTTRKYGGSGLGL 704 Query: 779 PLAKAMVDANMGKFYIFSTPAKGT 802 ++K + + G+ + S +G+ Sbjct: 705 TISKKLAELMKGEIIVKSQVNQGS 728 >gi|170720398|ref|YP_001748086.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619] gi|169758401|gb|ACA71717.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619] Length = 919 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 141/237 (59%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y + Sbjct: 271 ELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQLDYLST 326 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + V + ++++ A+ K++ + + Sbjct: 327 IEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLVQDTLTILAPAAHAKQLELLSL 386 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTG 745 + P ++ D +KQI N++SNAI FT G ++ + N ++ + V+DTG Sbjct: 387 IYRDTPSSLVGDPLRLKQILTNLVSNAIKFTREGTIVVRAMLEDEQQDNAQLRISVQDTG 446 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 447 IGLSPQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 503 >gi|17549399|ref|NP_522739.1| composite two-component sensor histidine kinase and response regulator hybrid transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431652|emb|CAD18329.1| probable composite two-component transcriptional regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 676 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 87/260 (33%), Positives = 140/260 (53%), Gaps = 13/260 (5%) Query: 560 DISEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 DI+E +Q + + S A++ AE+ S K DFLA VSHE+RTPL A++G+++++ Sbjct: 267 DITEHRQAEARRALLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLAM 326 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + P + I+RS + +++DLLD+S I SGK+ L PV L + + A Sbjct: 327 R---PYDEAMFRRGLEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERAR 383 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 ++ A +K+I + T + +P + D +KQ+ N+L+NA+ FTP GG + I T Sbjct: 384 ETIEPMARQKQITVDTEYL-PVPLLQGDAGRLKQVFWNLLANAVKFTPEGGHVRI-TVQA 441 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + ++ VRDTG+G+ L F Q S R G GLGL +AK +V+ + G Sbjct: 442 GADGLVATVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGHI 501 Query: 793 YIFSTPAK-GTLIEIIFPLY 811 S+ A GT + + PL+ Sbjct: 502 TAASSGADLGTTMAVTLPLH 521 >gi|312891850|ref|ZP_07751356.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311295684|gb|EFQ72847.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1449 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 84/249 (33%), Positives = 138/249 (55%), Gaps = 8/249 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +I+ +++ +L +AK AE+ + KS+FLA +SHEIRTPL +IGF++++ + Sbjct: 792 QNITSMIKQREELKNAKLHAEQANIAKSEFLANMSHEIRTPLNGVIGFTDLVLKTKL--- 848 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N +Y + +++S N +L I+ND+LD SKIE+GK+ L E L E +A ++ Sbjct: 849 -NETQQQYLSIVNQSANALLSIINDILDFSKIEAGKLELDAERCDLYEMSCQATDIITYQ 907 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSN 734 K + + + + ++PR I AD +KQI +N+L NA FT G +I + +T N Sbjct: 908 VQTKGLEMLLNISPDLPRFIYADTVRLKQILVNLLGNASKFTDQGEIELKIEVLSTTGDN 967 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + VRDTG+G+ + K + F Q S + GTGLGL ++ ++ K + Sbjct: 968 TSMRFGVRDTGIGIKPEKQAKIFEAFSQEDGSTTKKYGGTGLGLTISNKLLGLMGSKLQL 1027 Query: 795 FSTPAKGTL 803 S P KG+L Sbjct: 1028 ESVPGKGSL 1036 >gi|117924517|ref|YP_865134.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117608273|gb|ABK43728.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 803 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 137/254 (53%), Gaps = 7/254 (2%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DIS+ KQ + L AK AE+ + KS FLA +SHEIRTP+ I+G E++ N P Sbjct: 281 QDISQRKQLEADLLAAKTEAEQANQAKSRFLANMSHEIRTPMNTILGMGEILLN---APN 337 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P+ Y + R+G+ +L ++ND+LD+SKIE+G+++L +L + + I++++ Sbjct: 338 LTPKQHRYLSISQRAGDTLLGLINDILDLSKIEAGELHLEHTLFALHDELKSLITMLRPM 397 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A +K + ++ +P + D + +QI LN+LSNA+ FT G I + + Sbjct: 398 ARDKGLSMQCVIDPQLPTHVHGDPQRFRQIVLNLLSNALKFTDQGS-ITLHAKPIETGRL 456 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V DTG+GM + K +PF Q + R GTGLGL + + +V G+ Y S Sbjct: 457 QFTVSDTGIGMPEQVITKIFRPFVQAEANTTRRFGGTGLGLSICRQLVTMMHGEIYANSQ 516 Query: 798 PAKGT--LIEIIFP 809 +G+ + EI P Sbjct: 517 VGEGSQFIFEIELP 530 >gi|258652231|ref|YP_003201387.1| multi-sensor signal transduction histidine kinase [Nakamurella multipartita DSM 44233] gi|258555456|gb|ACV78398.1| multi-sensor signal transduction histidine kinase [Nakamurella multipartita DSM 44233] Length = 874 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 128/224 (57%), Gaps = 11/224 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+ LA VSHE+RTPL A+IGF++V++ PL R +I +G +L ++NDL Sbjct: 643 KSELLALVSHEVRTPLNAVIGFAQVLRGL---PLTPERQSAAVEHILGAGRHLLQLINDL 699 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 +D++ E+ ++ L FEP+ V+EA+ +V A E+ I + + P + AD + Sbjct: 700 IDLTGAETRQLQLTFEPLPAGPVVAEAMQIVAGMAEERSIALSSRAVGAGPAVWADRHRL 759 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +Q+ LN+L NAI FTP+GG++ + + E++ VRDTG G+ ++ PF + Sbjct: 760 RQVLLNLLGNAIKFTPAGGRVEVI---VGDGEIL--VRDTGEGIAPDQVPLLFTPFHRAG 814 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 S EG+GLGL L++ ++ A G+ + ST A G+ ++ Sbjct: 815 TSS---AEGSGLGLALSQRLMRAMGGELTLLSTGAGGSTFMVVL 855 >gi|158523280|ref|YP_001531150.1| histidine kinase [Desulfococcus oleovorans Hxd3] gi|158512106|gb|ABW69073.1| histidine kinase [Desulfococcus oleovorans Hxd3] Length = 565 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 82/247 (33%), Positives = 136/247 (55%), Gaps = 7/247 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + +L+ A K A KS FLA +SHE+RTPL +IIGF+ ++ + GPL N Sbjct: 317 RSRTAELADAMKKARAADHLKSAFLATMSHELRTPLNSIIGFTGMLLQELPGPL-NEEQK 375 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD--EAVSEAISLVQLYANEK 682 + + S +L ++ND+LDISKIE+G+++L PV+ D ++ + +LV A + Sbjct: 376 KQMGMVQTSARHLLALINDVLDISKIEAGQLSL--APVTFDLRSSIEKTAALVAPLAEKN 433 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 I ++ ++ + D R ++Q+ LN+L+NA+ FT +G I T T + ++ V Sbjct: 434 EIDLKVEIGKDVGDMTTDQRRLEQVVLNLLNNAVKFTETGSVSINCRTDTG--QYVISVA 491 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ ++ + +PF Q+ R EGTGLGL ++K +V G + S P KG+ Sbjct: 492 DTGIGIQPEDVAELFQPFHQVDTGLSRRHEGTGLGLSISKRLVAMMGGAIEVQSEPGKGS 551 Query: 803 LIEIIFP 809 + P Sbjct: 552 TFTVRLP 558 >gi|300865990|ref|ZP_07110724.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300335981|emb|CBN55882.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 1823 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 79/255 (30%), Positives = 138/255 (54%), Gaps = 25/255 (9%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 ++ L A++ AE + KS+FLA +SHEIRTP+ A+IG + ++ + P + Sbjct: 1022 EQNEALEQARQAAEVANRAKSEFLATMSHEIRTPMNAVIGMTGLLLDMDL----TPEQRD 1077 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + I SG+ +L I+ND+LD SKIESGKM+L P L + E++ L+ A+EK + Sbjct: 1078 FVETIRTSGDALLTIINDILDFSKIESGKMDLEQHPFELRTCIEESLDLLAPKASEKGLE 1137 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--------- 735 + +++P ++L D+ ++QI +N+L NA+ FT +G ++ T +E Sbjct: 1138 LAYLIDSSVPSKVLGDVTRLRQILVNLLGNAVKFTEAGEIVVSVTARKISERHGEELYKL 1197 Query: 736 -----------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 E+ + V+DTG+G+ +++ K F Q+ S + GTGLGL +++ + Sbjct: 1198 PLSNYQVPVPYEIQIAVKDTGIGIPPDRMDRLFKAFSQVDASTTRQYGGTGLGLAISQRL 1257 Query: 785 VDANMGKFYIFSTPA 799 + GK ++ S A Sbjct: 1258 SEMMGGKMWVVSKAA 1272 >gi|312961645|ref|ZP_07776143.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens WH6] gi|311283904|gb|EFQ62487.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens WH6] Length = 917 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 141/237 (59%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQLDYLGT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRT 688 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ Sbjct: 326 IEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTG 745 + + ++ D +KQI N++SNAI FT G + +I N ++ + V+DTG Sbjct: 386 VYRDTPLSLVGDPLRLKQILTNLISNAIKFTREGTIVARAMIEDEQEDNVQLRISVQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|189424609|ref|YP_001951786.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189420868|gb|ACD95266.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 995 Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 88/258 (34%), Positives = 137/258 (53%), Gaps = 8/258 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M DI++ ++ L AK+ AE S KS+FLA +SHEIRTP+ ++G +E++ F Sbjct: 591 VMVDITDRVNAEHALLEAKQAAESASRAKSEFLANMSHEIRTPMNGVLGMAELLA---FT 647 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L +Y I SG+ +L ++ND+LD+SKIE+GK+ L + SL +A+++ ++ Sbjct: 648 DL-TAEQEQYLACIKSSGDNLLALINDILDLSKIEAGKIELEYADFSLRKAINDVVTTQI 706 Query: 677 LYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHT 732 + KR+ A ++P I L D KQI LN+LSNAI FT G I + H+ Sbjct: 707 SAIHTKRLQFSCDLAEDLPEIVLGDQLRFKQILLNLLSNAIKFTDHGSVSISAELIECHS 766 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 V + V DTG+G+ + PF Q +S R GTGLGL +++ + + G Sbjct: 767 FQSFVRVTVADTGIGIQAEARQTIFAPFTQADSSTTRRFGGTGLGLAISRQLAELMGGDI 826 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S P G+ + P Sbjct: 827 GLESEPGSGSRFYLDLPF 844 >gi|108761548|ref|YP_634819.1| sensor histidine kinase [Myxococcus xanthus DK 1622] gi|18030059|gb|AAL56598.1|AF449411_19 histidine kinase-like protein [Myxococcus xanthus DK 1622] gi|108465428|gb|ABF90613.1| sensor histidine kinase [Myxococcus xanthus DK 1622] Length = 502 Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 130/233 (55%), Gaps = 8/233 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FL VSHE+RTPL +IIG+SE++ G L NP + Y I G +L++++ + Sbjct: 246 KSTFLGTVSHELRTPLASIIGYSEMLAEGLAGAL-NPEQLLYVRTIVEKGESLLNLISSI 304 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRS 703 LD+S+IE+G++ L PV L + A+S V A K + + PR+ AD Sbjct: 305 LDLSQIEAGRLRLVMGPVDLGSVIQTAVSSVAPQAQRKGVELEVRLPPLPQPRLAADADK 364 Query: 704 VKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVI-----LRVRDTGVGMTNYELEKAM 757 ++Q+ +N+L+NA+ FT SGG++ ++ + T+ E+ + V DTG+G+ + E Sbjct: 365 LRQVVVNLLANAVKFTSSGGRVSVVMSEATAQHELAAPGYRVCVEDTGMGIREDQFENIF 424 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F Q+ S G GLGL + K++V+ + G+ + S +G+ ++ PL Sbjct: 425 QSFYQVDGSSTREHGGAGLGLAIVKSLVEGHGGRVSVESEFGRGSRFTVVLPL 477 >gi|320156917|ref|YP_004189296.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O] gi|319932229|gb|ADV87093.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O] Length = 716 Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 82/261 (31%), Positives = 142/261 (54%), Gaps = 11/261 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK-NQRFGPL 618 DI + K+ + LS K AE + KS FLA +SHE+RTPL A++G+++++K +QR Sbjct: 239 DIDKLKRLQQSLSETKDKAEVANRAKSIFLANMSHELRTPLNAVLGYTQLMKCDQRL--- 295 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 ++ EY + I+RSG +L ++ND+LD+SKI++G + + + E E L+Q+ Sbjct: 296 -TAKHHEYLDIINRSGEHLLSLINDVLDMSKIDAGHSVVERKWFNFREVSEEINDLMQMK 354 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSN 734 A +K++ + +++P +L D+ +Q+ +N+L NAI FT G I Sbjct: 355 AMQKQLTLHCRVEDSVPHFVLGDVVKTRQVLINLLGNAIKFTYRGNVRLNIASEALQNGQ 414 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +V V DTG+G++ E+ +PF Q+ + I GTGLGL ++K V+ G+ + Sbjct: 415 HKVTFEVSDTGIGISEENQERVFQPFEQLDSD--ITQNGTGLGLSISKQFVELMGGQLVL 472 Query: 795 FSTPAKGTLIEIIFPLYDTSH 815 S +G+ + + H Sbjct: 473 KSELHRGSTFSFSLVMETSEH 493 >gi|256829193|ref|YP_003157921.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578369|gb|ACU89505.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 778 Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 102/380 (26%), Positives = 187/380 (49%), Gaps = 20/380 (5%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPF 497 D ++ ++ ++ + ++ A+ GI I ++ GIIL N+ +S + GY V +++ Sbjct: 258 DRKLAEKSLQESEERFKALHNASFGGITIHDK-GIILDCNQGLSGITGYSVNELIGMDGL 316 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYS 555 + E++ VM + L + E + L +E LR+ + +P+ S Sbjct: 317 LLIAEKSRKMVMKNILA-----GYEKPYEAVGLRKNGQE--YPLRLEARNIPYKGRMVRS 369 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + D +E K + +L A+ A+ + KS+FLA +SHEIRTPL ++G ++++ Sbjct: 370 VEFRDDTERKLVEAELIKARDAAQAANQAKSEFLANMSHEIRTPLNGVMGLMQLLQTTLL 429 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + E + RS + + ++ DLLDISKIE+GKM++ E SL E L Sbjct: 430 ----DDEQREIVSMAIRSSDRLARLLTDLLDISKIEAGKMDVVEEDFSLRELCDSVTELF 485 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII----ISTT 730 + A++K + + ++P IL + ++QI N++ N++ FT G + I+ Sbjct: 486 AVNADKKNVSLEYVIDPDLPPILIGGVARLRQILFNLVGNSLKFTDQGRVRLEMAPIAPA 545 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 ++ V DTG+G+ +L KPF Q+ S + +G GLGL + + +V+ G Sbjct: 546 KNGELRLLFSVYDTGIGIPEDKLRDLFKPFAQVEGSYTRKYQGAGLGLAIVRRLVELMRG 605 Query: 791 KFYIFSTPAKGTLIEIIFPL 810 Y+ S KGT + ++ P Sbjct: 606 HIYMESVLGKGTAVHVVLPF 625 >gi|218676825|ref|YP_002395644.1| hypothetical protein VS_II1065 [Vibrio splendidus LGP32] gi|218325093|emb|CAV26933.1| Hypothetical protein VS_II1065 [Vibrio splendidus LGP32] Length = 1688 Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 91/263 (34%), Positives = 148/263 (56%), Gaps = 16/263 (6%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DISE K+ +L K+ A+ S KS+FLA +SHEIRTP+ AIIG S + G + Sbjct: 1064 DISEMKRLNEQLEEEKQRADLASQAKSEFLANMSHEIRTPMNAIIGLSYL----AIGEIS 1119 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM---NLHFEPVSLDEAVSEAISLVQ 676 NP Y + RSG+ +L I+ND+LD SKIE+G++ ++ F+PV+ + I L++ Sbjct: 1120 NPVARNYIEKVHRSGHSLLSIINDILDFSKIEAGQLVIDSIPFDPVT---TFQDVIELME 1176 Query: 677 LYANEKRILIRTSF--ANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS 733 ANEK++ + S N P I LR + Q+ LN++ NAI FT +G + ++ + Sbjct: 1177 PKANEKQLNLSMSIDPELNTPLIGDPLR-LFQVILNLVGNAIKFTETGSVSLTVALVESD 1235 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + ++ V DTG+G+++ L K + F Q ++ R GTGLGL +++ +V A G+ Sbjct: 1236 DNSLTMKVMVADTGIGISDENLHKLFEAFSQADSTTTRRFGGTGLGLNISQKLVRAMGGQ 1295 Query: 792 FYIFSTPAKGTLIEIIFPLYDTS 814 + S +G+ + L +S Sbjct: 1296 ISVGSVFGQGSEFSFVLTLSRSS 1318 >gi|116328548|ref|YP_798268.1| sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121292|gb|ABJ79335.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 1023 Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 93/264 (35%), Positives = 153/264 (57%), Gaps = 12/264 (4%) Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II +K F S + H+I+E K ++ L AK+ AE S K+DFLA +SHEIRTPL Sbjct: 473 IISQKRVFLSVW----HEITERKVYEDSLKRAKESAEAASKAKTDFLAMMSHEIRTPLNG 528 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 +IG +++ G EY + I SG +L ++ND+LD+S+IESG++ L +PV Sbjct: 529 VIGTVSLLEGTSLGA----EQREYLDIIKSSGQNLLILLNDILDLSRIESGQLTLEMQPV 584 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721 SL + SE I+L + A EK ++I S ++++P I++D ++QI N+L N+I FT Sbjct: 585 SLKKLTSEVINLFRPMAEEKGLVIEFSISSSVPNWIISDPYRLRQILTNLLGNSIKFTEK 644 Query: 722 GGQII-ISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 G ++ + N + +I V+DTG+G+ +LE + F Q+ +S + G+GLGL Sbjct: 645 GKVLLKVEAEKFPNNKFRLIFHVKDTGIGIAEEKLELLFRAFSQVDSSTTRKYGGSGLGL 704 Query: 779 PLAKAMVDANMGKFYIFSTPAKGT 802 ++K + + G+ + S +G+ Sbjct: 705 TISKKLAELMKGEIIVKSQVNQGS 728 >gi|37520203|ref|NP_923580.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35211196|dbj|BAC88575.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 672 Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 106/383 (27%), Positives = 184/383 (48%), Gaps = 18/383 (4%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQ 503 R++ +L L+ SD I I++ EG +L NR + YP +D+ + F V Sbjct: 149 RQLRSSEQRLQDFLDNASDLIEIVSPEGRLLYVNRTWRETLAYPADDLEKMTCFDVVAPA 208 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSSCYSLTMHDI 561 + P ++ L + + LE L E + SL K DI Sbjct: 209 DRP-LLAEALERVQQSQRSERLEVAFLAMGGREIAVEGSLNCQFDK-GVPQAIRCIFRDI 266 Query: 562 SEWKQEKN------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +E +Q + + A++ AE+ S K +FLA VSHE+RTPL +I+G++++++ +R Sbjct: 267 TERRQAEQVRVEILREQVARQQAEEASRMKDEFLAMVSHELRTPLNSILGWAQLLRARRI 326 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 +E I+R+ + ++ DLLDIS++ +G+M L +P+ L ++ A+ V Sbjct: 327 DEKAATGALES---IERNARMQNRLIEDLLDISRVVTGQMRLELQPLELSGVIASAVEAV 383 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 Q A K+I +R + +L D+ + QIA N+L+NA+ FTP GG + + Sbjct: 384 QPAAAVKQIQLRCRIDAAVGPVLGDVDRLHQIAWNLLANAVKFTPQGGTVEVDLAQGEIH 443 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 ++ VRD G+G++ L++ + F Q S ++ G G GLGL + + +V+ + G Sbjct: 444 AQLV-VRDNGIGISPAFLDQIFERFRQADSTSTRVHG-GLGLGLSIVRHLVELHGGTAAA 501 Query: 795 FST-PAKGTLIEIIFPLYDTSHP 816 S +G + PL P Sbjct: 502 ESAGKGQGATFTVRLPLLADGTP 524 >gi|3953516|dbj|BAA34717.1| sensor kinase rtpA [Pseudomonas tolaasii] Length = 917 Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 82/239 (34%), Positives = 143/239 (59%), Gaps = 12/239 (5%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L +K A + S KS+FLA +SHEIRTPL I+GF+ +++ +PR ++Y Sbjct: 270 ELDLTRKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----SPRQLDYLGT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRT 688 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ Sbjct: 326 IEKSADNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSL 385 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILR--VRD 743 + + ++ D +KQI N++SNAI FT G I++ +EE V LR V+D Sbjct: 386 VYRDTPLALVGDPLRLKQILTNLISNAIKFTREG--TIVARAMVEDEEEDSVQLRISVQD 443 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TG+G++N ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 444 TGIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|163739230|ref|ZP_02146642.1| periplasmic sensor hybrid histidine kinase [Phaeobacter gallaeciensis BS107] gi|161387630|gb|EDQ11987.1| periplasmic sensor hybrid histidine kinase [Phaeobacter gallaeciensis BS107] Length = 759 Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 83/252 (32%), Positives = 134/252 (53%), Gaps = 7/252 (2%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 SE + + L A+K A+ + KS+FLA +SHEIRTP+ +IG +E+I + Sbjct: 217 SERDEREYALEEARKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILETDL----DE 272 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 YA I +SG+ +L I+ND+L+ SKIE+GKM L P +L A+ + ++L+ A E Sbjct: 273 DQTMYAETISKSGSALLTIINDILNFSKIEAGKMELERAPFNLQTAIEDVVTLLSPKAAE 332 Query: 682 KRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K + + + ++P D+ ++QI N+ NA+ FT G I + T ++ LR Sbjct: 333 KNVEVTLRYDPSLPECYEGDVGRIRQILTNVAGNAVKFTGKGYVYIEVSGETDDDRTALR 392 Query: 741 --VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG G+ L++ F Q + EGTGLGL ++ +++ G+ + S Sbjct: 393 ISVTDTGAGIPEDRLDRIFNAFEQADGAATRNYEGTGLGLAISTRLLELMGGRISVQSEL 452 Query: 799 AKGTLIEIIFPL 810 KG++ I PL Sbjct: 453 GKGSVFAIDLPL 464 >gi|119471909|ref|ZP_01614217.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Alteromonadales bacterium TW-7] gi|119445282|gb|EAW26572.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Alteromonadales bacterium TW-7] Length = 928 Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 86/246 (34%), Positives = 139/246 (56%), Gaps = 8/246 (3%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + +++ + +L+ AKK A+ + KSDFLA++SHE+RTPL ++GF+ Q + N Sbjct: 266 LEQYETQNIQLTMAKKEAQDANRVKSDFLAKMSHELRTPLNGVMGFTR----QLYKTPLN 321 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 +Y + I S N ++ I++D+LD SK+E+G M L L +AV+E ++L+ A+ Sbjct: 322 KHQKDYLDTIMLSANSLMTIISDILDFSKLEAGAMELESIQFQLRDAVNEVMTLLAPSAH 381 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 EK++ + +P L D KQ+ +N+LSNAI FT G + + +EE Sbjct: 382 EKQLELSIYINPQVPDDLTGDPTRFKQVLINLLSNAIKFTEQGSIKVDISYRLLDEESAS 441 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V++ V DTGVG+ + + PFGQ +S + GTGLGL + K +V+A G+ + S Sbjct: 442 VLVSVTDTGVGIPMDKQDSLFTPFGQADSSITRKFGGTGLGLIITKHIVEAMNGRISLNS 501 Query: 797 TPAKGT 802 P GT Sbjct: 502 APGNGT 507 >gi|269102668|ref|ZP_06155365.1| hypothetical protein VDA_002094 [Photobacterium damselae subsp. damselae CIP 102761] gi|268162566|gb|EEZ41062.1| hypothetical protein VDA_002094 [Photobacterium damselae subsp. damselae CIP 102761] Length = 693 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 136/258 (52%), Gaps = 7/258 (2%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y T +I+ K+ L A+K AE +S KS FLA +SHEIRTPL A++G + + + Sbjct: 298 YRGTSKNITARKKRLFDLQEARKQAESANSAKSQFLAMMSHEIRTPLNAVLGLMDTLADS 357 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 +E+ +D+S L+L I+ND+LD+SKIESG L +S+ + ++ ++ Sbjct: 358 GL----RQEQMEWVKQMDQSAQLLLTIINDILDLSKIESGNFELTNGEMSITDCINLVVN 413 Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + A K IL++ +P ++ D + QI N++ NAI FT +G +++ Sbjct: 414 QLSEQARNKNILLQAEIDQTVPSVICGDKNRIAQIMFNLIGNAIKFTSTGSVRVLARRVE 473 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 N E+ V DTG+G+ PF Q +S + GTGLGL ++K ++ GK Sbjct: 474 DNIEI--SVIDTGIGIAKQAQNNLFHPFHQADSSITRKYGGTGLGLAISKHLISKMNGKI 531 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S+ G+ ++I P+ Sbjct: 532 ELDSSLGIGSCFKVILPI 549 >gi|189423635|ref|YP_001950812.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419894|gb|ACD94292.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 627 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 93/343 (27%), Positives = 167/343 (48%), Gaps = 17/343 (4%) Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 +I N+A +L G E ++ KP T + ++P + Y T +++ E Sbjct: 147 VIEEANQAFEQLLGLKREQVVGKPATEAYQTDSPLYLQEYAT-VVATGQPSRFESCCAPL 205 Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + ++ + R+ ++ ++ DI+E K L + + + KS FLA + Sbjct: 206 DRHFRISACRVGPER------FATLFEDITEQKSHVETLRSTMQQLKSANEAKSRFLAVM 259 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHEIRTPL I G +++++ P EY N+ID S +L+++ND+LD SKIE+ Sbjct: 260 SHEIRTPLNGITGMVQLLRDMEMPPAQR----EYLNFIDSSAESLLNVINDILDFSKIEA 315 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNI 711 ++ L P + + + + +++L K +L+ ++ +L D + QI N+ Sbjct: 316 ERLELELVPFQPLKLLHDTLRVMRLRTQAKGLLLSLVCPPDLAEVLVGDPHRLTQILNNL 375 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 + NAI FT +GG+I++ + S + + V+D+G+GM + +PF Q +S Sbjct: 376 VGNAIKFT-AGGEIVVRASSRSRGDGTVLFAVEVQDSGIGMDQATQQTIFEPFIQADSST 434 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 R GTGLGL + K +V+ G + S+P G+ PL Sbjct: 435 SRRFGGTGLGLAICKQLVELMHGTITVASSPGNGSTFCFAVPL 477 >gi|171060781|ref|YP_001793130.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170778226|gb|ACB36365.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 801 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 98/365 (26%), Positives = 182/365 (49%), Gaps = 16/365 (4%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L +L D + + + I+ N ++FGY + ++L +P + L + + +L Sbjct: 18 LARLLAIADDAVIVADAAQRIVLFNEGAERVFGYRLAEVLGQPLAMLLPEPARAAHAGHL 77 Query: 514 TEIL--SLDLRQTLEKITLGSTKEEKLL---SLRIIIKKLPFSSCYSLTMHDISEWKQEK 568 +L R+ E+ + + + +L I +L + ++ + D+SE +Q + Sbjct: 78 RAFAQSALPARRMAERRDIHGRRADGVLFDAEASISHVELDGQTYFAAILRDVSESRQAR 137 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 L AK AE KS FLA +SHEIRTPL A+IG + ++ + P+ + + +++A Sbjct: 138 RALERAKAEAEAAERAKSLFLANMSHEIRTPLNAVIGMTTLLMDT---PMSDEQ-LDFAR 193 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I SG +L ++ND+LD SK + GK+ + + L V +A+ LV A EKR+ + Sbjct: 194 TIRASGETLLGVINDILDFSKADVGKLEIEQQRFDLRRCVEDALDLVAPRALEKRLNLAY 253 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRV 741 + P ++ D+ ++QI N+LSNA+ FT G ++I + + + V Sbjct: 254 LIEDGTPENLVGDVTRIRQILANLLSNAVKFTHQGEVLVIIDSEPVDAGDGPLHRIHFAV 313 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +D+G+G+ L + + F Q+ S + GTGLGL ++K + + G + S P +G Sbjct: 314 QDSGIGIAAEHLPRLFQSFTQVDASTTRKYGGTGLGLAISKRLAELMGGTVSVQSEPGQG 373 Query: 802 TLIEI 806 ++ + Sbjct: 374 SVFRV 378 >gi|83815808|ref|YP_445757.1| PAS domain-containing protein [Salinibacter ruber DSM 13855] gi|83757202|gb|ABC45315.1| PAS domain S-box protein [Salinibacter ruber DSM 13855] Length = 904 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 89/260 (34%), Positives = 133/260 (51%), Gaps = 15/260 (5%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF- 615 T+ DI+E KQ + L AK+ AE+ S KS LA +SHEIRTPLT+IIGF+E + Sbjct: 647 TIQDITERKQRERALREAKQEAEEASQLKSSLLANMSHEIRTPLTSIIGFAEATNAEAKE 706 Query: 616 ------GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 PL N YA I++SG +L+ + +L++SK+E+G+M L PV L E Sbjct: 707 LDLPDDSPLPN-----YAELIEQSGRRLLETLEGVLNLSKLEAGEMELEARPVDLVEEAE 761 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 ++ A EK +L++ AD V+ +A N+LSNA+ +T +GG++ + Sbjct: 762 AVAEELRPRAEEKEVLLQ--LETEAAWAEADKGGVQILARNLLSNAVKYTEAGGRVRLR- 818 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 T+ V V DTG+GM E +PF Q +GTG+GL + K Sbjct: 819 TYREEGAVAFEVEDTGIGMDPETAEGLFEPFRQASEGFSREYQGTGIGLAVTKETTKQME 878 Query: 790 GKFYIFSTPAKGTLIEIIFP 809 G + + +GT I + P Sbjct: 879 GSIDVETEKGEGTRITVWLP 898 >gi|158338239|ref|YP_001519416.1| serine/threonine protein kinase and signal transduction histidine kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris marina MBIC11017] gi|158308480|gb|ABW30097.1| serine/threonine protein kinase and signal transduction histidine kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris marina MBIC11017] Length = 2040 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 90/263 (34%), Positives = 140/263 (53%), Gaps = 18/263 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP--LGNPRY 623 Q +L A+ AE + KSDFLA +SHE+RTPL AI+GFS+++ P LG Sbjct: 1557 QRTQQLRTAQLEAEHANQAKSDFLASMSHELRTPLNAILGFSQLMAQDARLPQHLGESLA 1616 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 I I+RSG +LD++ND+L +SKIE+GK L + + E + ++QL A K Sbjct: 1617 I-----INRSGEHLLDLINDVLALSKIEAGKTTLQLDTFNFYEFLQAIHGMLQLRAKSKN 1671 Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVI--- 738 + + +IP ++ AD R ++QI +N+L NAI FT G + ++ H+ +E + Sbjct: 1672 LDFHFEQSPDIPEVIQADERKLRQILINLLGNAIKFTEQGRVTLRVTNAHSQSEGLTPPD 1731 Query: 739 -----LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 V DTG G+ EL+ + F Q + + R +GTGLGLP++++ V G+ Sbjct: 1732 ISVLQFEVEDTGAGIAKDELDSVFEAFVQTQSGIKSR-QGTGLGLPISQSFVQLMGGQLQ 1790 Query: 794 IFSTPAKGTLIEIIFPLYDTSHP 816 + S GT P+ T+ P Sbjct: 1791 VRSEEGIGTCFFFNLPVLVTTTP 1813 >gi|108757295|ref|YP_630537.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108461175|gb|ABF86360.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 944 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 108/356 (30%), Positives = 180/356 (50%), Gaps = 35/356 (9%) Query: 465 IAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 I I R+ +LS N ++LFGY P E + + F L P+V+ + R Sbjct: 155 IITITRQFRVLSWNPEATRLFGYSPAEALGKHIFE--LVATEPTVLPEAEQASREVVQRG 212 Query: 524 TLEKITL-----GSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576 L +T GS + +L +L + + ++L F + Y HDI++ L A+K Sbjct: 213 RLRSVTRRVRKDGSVVDVELRALPVSVGGRQLGFIAIY----HDITD-------LERARK 261 Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 AE + KS FLA +SHEIRTP+ AIIG + ++ ++ ++ I +S Sbjct: 262 AAEAANQAKSLFLATMSHEIRTPMNAIIGMTGLLLDRAL----TEEQRDFVATIRQSSEA 317 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 +L ++ND+LD SKIE+G+ P L + V + L+ + A+EK + + A +P+ Sbjct: 318 LLTLLNDVLDFSKIEAGRFEAELRPFDLRQCVESVLDLMAVRASEKGLDLGCDLAPPLPQ 377 Query: 697 IL-ADLRSVKQIALNILSNAIHFTPSGGQIII-------STTHTSNEEVILRVRDTGVGM 748 +L D ++Q+ LN++ NA+ FT GG ++ T ++ E+ V+DTG+G+ Sbjct: 378 MLVGDASRLRQVLLNLVGNALKFTEHGGAVVSVEGLALGGTEGAADWELTFSVQDTGLGI 437 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS--TPAKGT 802 + +PF Q+ S R GTGLGL ++K +V+A G ++ S P +GT Sbjct: 438 PDDRRTGLFQPFNQLDASVSRRFGGTGLGLAISKRLVEAMGGTIWVESEGVPGQGT 493 >gi|283780478|ref|YP_003371233.1| histidine kinase [Pirellula staleyi DSM 6068] gi|283438931|gb|ADB17373.1| histidine kinase [Pirellula staleyi DSM 6068] Length = 636 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 127/238 (53%), Gaps = 8/238 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +FLA +SHE+RTPL +IIGFSEV+ L + + YA I +SG +L+++ND+ Sbjct: 363 KGEFLANMSHELRTPLNSIIGFSEVLAG--IDSLTD-KQKRYAQNIQKSGRSLLEMINDI 419 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD++K+E+GKM++ +D +S +V+ +K I + N++P + D + Sbjct: 420 LDLAKLEAGKMDVRLSEFRIDSILSAHCDMVRSLTEDKNIDLVLDIENDLPALYQDQAKL 479 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ-- 762 +QI N+LSNAI FTP GG+I + S + + V DTGVG+ + + E + F Q Sbjct: 480 QQILTNLLSNAIKFTPEGGRITVGAKGDSRGFIEMYVSDTGVGIADADKEIIFEKFRQGT 539 Query: 763 -IPNSQQIRGE--GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 + + E GTGLGL + K + G+ + S +G+ + P P Sbjct: 540 AVLGRDNLTREYSGTGLGLSIVKELCKLLGGEVSVESELGRGSTFRVTIPWMRADQPQ 597 >gi|153871895|ref|ZP_02000948.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152071640|gb|EDN69053.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 490 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 85/266 (31%), Positives = 151/266 (56%), Gaps = 19/266 (7%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK-NQRFGPLGNPRYIEY 626 K++ + A++ AE S KS+FL+ +SHE+RTPL I+G+++++K N++ + + Sbjct: 9 KDRATAAREQAEAASRSKSEFLSNMSHELRTPLNGILGYAQILKRNKKLTTMQR----DG 64 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 N ID SG +L ++ND+LD+SKIE+GKM L+ ++L + ++++ A EK + Sbjct: 65 LNVIDSSGRHLLTLINDILDMSKIEAGKMELYACSLNLQNFLDNIGGVIRMRAEEKNVFF 124 Query: 687 RTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-------I 738 + +P + D + ++QI +N+L NA+ FT GQ+I+ T + ++ + Sbjct: 125 KFEMPIPLPIGVSVDEKRLRQILINLLGNAVKFTQQ-GQVILRVTPLGSPQIKDDLQQQL 183 Query: 739 LR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +R V D G+GMT EL K F Q+ +++R GTGLGL ++K +V+ + + S Sbjct: 184 IRFEVEDEGIGMTQEELGKIFLAFEQV-GDEKMRQAGTGLGLAISKRLVELMGSQLVVKS 242 Query: 797 TPAKGT--LIEIIFPLYDTSHPHDCI 820 KG+ EI+ PL + + + I Sbjct: 243 EKNKGSNFQFEIMLPLVEVADQIEAI 268 >gi|158338165|ref|YP_001519342.1| two-component hybrid histidine kinase sensor and regulator [Acaryochloris marina MBIC11017] gi|158308406|gb|ABW30023.1| two-component hybrid histidine kinase sensor and regulator [Acaryochloris marina MBIC11017] Length = 417 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 82/264 (31%), Positives = 138/264 (52%), Gaps = 11/264 (4%) Query: 563 EWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + +Q+ +L+H + E ++ KS+F+A +SHE+RTP+ AI+GFS+++ Q Sbjct: 148 QLRQQNEELAHHRAQIEAQNQELIKAYRLKSEFIATISHELRTPMNAIMGFSQLLLRQYP 207 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 PL + D S NL L +VN++LD SKIE+ ++ LH EP L + I + Sbjct: 208 DPLSEQQLDMVQRIFDNSRNL-LTMVNEVLDFSKIEANRLELHPEPFQLSVPILATIQEL 266 Query: 676 QLYANEKRILIRTSFANNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 Q A EK + ++ + I D ++++ +N++SNAI FT G++ + Sbjct: 267 QALAVEKALTLKAEIPETLQSIQLTNDPECLRRVLVNLISNAIKFT-EAGEVTLQLHQPQ 325 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +++ + V DTG+GMT +L PF Q S GTGLGL + +++V A G+ Sbjct: 326 PDQIKISVVDTGIGMTPEQLSTIFDPFCQADQSLTRHHSGTGLGLAITESLVKAMQGQIS 385 Query: 794 IFSTPAKGTLIEIIFPLYDTSHPH 817 + S P G+ + PL + P+ Sbjct: 386 VSSQPGVGSTFTVELPLQVQTLPN 409 >gi|167630091|ref|YP_001680590.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] gi|167592831|gb|ABZ84579.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] Length = 567 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 79/254 (31%), Positives = 140/254 (55%), Gaps = 8/254 (3%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I E K K +L ++++A + KS+FLA +SHEIRTP+ AI+GF ++ N Sbjct: 162 IRELKLAKEELKVSREMAVVANRAKSEFLANMSHEIRTPMNAILGFVDLTLATEL----N 217 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 +Y + + ++ ++ D+LDISKIESG++ + +P SL + A+ L+ + A+ Sbjct: 218 AEQSKYLGMVRSAAQSLMRLLEDVLDISKIESGQLVVEQQPFSLASVLRSAVDLLSVKAS 277 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVI 738 +K + +R +P +L D + Q+ +N+LSNA+ FT +G ++ + + ++ Sbjct: 278 DKALQLRYQIPAGVPEVLVGDANRLTQVLVNLLSNAVKFTDAGEVVLGLDILEQDHRQIS 337 Query: 739 LR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 LR VRDTG+G+ LE + F Q+ +S R G+GLGL + + +V+ G+ ++ S Sbjct: 338 LRFYVRDTGIGIAPDRLEAVFEKFYQVDSSSTRRFGGSGLGLAIVRQLVENMGGRVWVES 397 Query: 797 TPAKGTLIEIIFPL 810 KG+ + P Sbjct: 398 ELGKGSTFYVTLPF 411 >gi|152994178|ref|YP_001339013.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150835102|gb|ABR69078.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 912 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 145/256 (56%), Gaps = 13/256 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 ++ ++ L AK E+ KS F+AR+SHEIRTP+ A+IG S++ N +P Sbjct: 166 AKVRERTAALELAKAELEEALEAKSSFVARMSHEIRTPINAVIGLSDLALNT------SP 219 Query: 622 RYIEYANYIDR---SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + E +Y+ + SG+++L +VN++LD SKIE+GK+ S ++ + +++ Sbjct: 220 NHKEQQDYLQKIRDSGDILLSLVNNVLDFSKIEAGKLTAESVCFSTEKLIRTTVNMNVFG 279 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEE 736 A K++ + T A++IP +L D ++QI +N++SNAI FT SG +I + E Sbjct: 280 AYAKKLELVTDIADDIPEYLLGDPLRIQQILVNLVSNAIKFTESGSIVIRLRCNKLDGEN 339 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 ++L+ V D+G+G+++ +LE+ PF Q NS GTGLGL + + + + G+ + Sbjct: 340 ILLQCEVSDSGIGISSTQLEQLFCPFTQADNSVTRVYGGTGLGLTITRQLCELMNGEIKV 399 Query: 795 FSTPAKGTLIEIIFPL 810 S KG+ ++ PL Sbjct: 400 ESDVGKGSTFTVLLPL 415 >gi|86145818|ref|ZP_01064147.1| PAS/PAC sensor hybrid histidine kinase [Vibrio sp. MED222] gi|85836517|gb|EAQ54646.1| PAS/PAC sensor hybrid histidine kinase [Vibrio sp. MED222] Length = 1656 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 90/259 (34%), Positives = 146/259 (56%), Gaps = 16/259 (6%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DISE K+ +L K+ A+ S KS+FLA +SHEIRTP+ AIIG S + G + Sbjct: 1032 DISEMKRLNEQLEEEKQRADLASQAKSEFLANMSHEIRTPMNAIIGLSYL----AIGEIS 1087 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM---NLHFEPVSLDEAVSEAISLVQ 676 NP Y + RSG+ +L I+ND+LD SKIE+G++ ++ F+PV+ + I L++ Sbjct: 1088 NPVARNYIEKVHRSGHSLLSIINDILDFSKIEAGQLVIDSIPFDPVT---TFQDVIELME 1144 Query: 677 LYANEKRILIRTSF--ANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS 733 ANEK++ + S N P I LR + Q+ LN++ NAI FT +G + ++ + Sbjct: 1145 PKANEKQLNLSMSIDPELNTPLIGDPLR-LFQVILNLVGNAIKFTETGSVSLTVALVESD 1203 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + ++ V DTG+G+++ L K + F Q ++ R GTGLGL +++ +V A G+ Sbjct: 1204 DNSLTMKVMVADTGIGISDENLHKLFEAFSQADSTTTRRFGGTGLGLNISQKLVRAMGGQ 1263 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + S +G+ + L Sbjct: 1264 ISVGSVFGQGSEFSFVLTL 1282 >gi|294506364|ref|YP_003570422.1| Sensory histidine protein kinase [Salinibacter ruber M8] gi|294342692|emb|CBH23470.1| Sensory histidine protein kinase [Salinibacter ruber M8] Length = 1987 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 84/265 (31%), Positives = 137/265 (51%), Gaps = 18/265 (6%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR- 614 + DI+E +++ +L AKK AE+ + KS LA +SHEIRTPLT+I+GF+E+I+ + Sbjct: 1713 MLAQDITEDVRKERELMSAKKAAEEANRMKSSLLANMSHEIRTPLTSILGFAEMIEEETG 1772 Query: 615 ----------FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 PLG E+A I +SG ++D + +L++S++E+G+M+L EPV L Sbjct: 1773 SLEPPAEAGDLKPLG-----EFAGLIQKSGQRLMDTLTGVLNLSRLEAGEMDLAAEPVDL 1827 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 E E ++ A + + ++ AD ++ + N++SNAI +T G Sbjct: 1828 SEQAREVADELRPRAEAEGLRLQVQAGGEPIWAQADGGGMQIVLRNLVSNAIKYTDDG-- 1885 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 I + N ++ V D+G+GM ++E KPF Q EGTGLGL + + Sbjct: 1886 EIRLRVYRENGSAMIEVEDSGIGMDPEKIEDLFKPFRQASEGMAREYEGTGLGLAVTREA 1945 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809 V+ G + + KGT I + P Sbjct: 1946 VEQMNGSIEVETEKGKGTTIRVQLP 1970 >gi|302036186|ref|YP_003796508.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii] gi|300604250|emb|CBK40582.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii] Length = 1431 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 110/393 (27%), Positives = 182/393 (46%), Gaps = 48/393 (12%) Query: 444 KRKMEIEVMQLCSILEATSD--GIAIIN--REGIILSTNRAVSKLFGYPVEDILRKPFTV 499 +R+ E + + +A D G AII+ +G+I N A L GY ++++ K Sbjct: 605 QRRSEATLQAYSTFQKAMLDNAGHAIISCKPDGMIQVFNPAAEALLGYSADELVGK---- 660 Query: 500 FLEQNTPSVMNHYLTEIL------SLDLRQTLEK---------------------ITLGS 532 TP + H L E++ S +L T+E + Sbjct: 661 ----QTPGIF-HDLDEVVARARQFSAELGTTIEPGFDVFVEKCRRNLPNEHEWAYVCKDG 715 Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 T++ LL++ + + + Y DI+ K +L AK+ AE + KS FLA + Sbjct: 716 TRKTVLLNVTALREADGRITGYLGIATDITPLKLTAQELVSAKEAAEAANVAKSRFLANM 775 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHEIRTPL ++G +E++ + + + + RSG +L+++ND+LD SKIE+ Sbjct: 776 SHEIRTPLNGVLGMTELLLSTSL----SAKQQSLLETVRRSGVALLEVINDILDFSKIEA 831 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNI 711 GK+ L L + V EA+ L A K++ + ++P ++ D ++QI LN+ Sbjct: 832 GKLELEQVEFGLRQVVEEAVELFAGSAGNKKLELTYFIPADVPDSLVGDAVRLRQILLNL 891 Query: 712 LSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 + NAI FT G + ++ H + RVRDTG+G+ + + F Q S Sbjct: 892 IGNAIKFTAQGEVTVAFALAEQHADTLTLACRVRDTGIGIPDAAQAQLFTAFTQADGSTT 951 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 R GTGLGL + K +V G+ + S P +G Sbjct: 952 RRFGGTGLGLAIVKQLVQLMGGEVGLVSAPGQG 984 >gi|21243225|ref|NP_642807.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri str. 306] gi|21108755|gb|AAM37343.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri str. 306] Length = 1364 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 103/364 (28%), Positives = 174/364 (47%), Gaps = 29/364 (7%) Query: 464 GIAIINRE--GIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLD 520 G AII + G + N A KL GY +++ R+ + F+EQ H L E Sbjct: 503 GYAIIATDSGGFVTLFNPAAEKLLGYSAAEVIGRRKASQFVEQEELQERAHMLAEQTGTQ 562 Query: 521 LRQTLEKI----TLGSTKEEKLLSLRIIIKKLP----FSSC---------YSLTMHDISE 563 + TLE I +LG + + + ++LP S+ Y D++E Sbjct: 563 VAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAVDLTE 622 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K + +L A A+ + KSDFLA +SHEIRTP+ AI+G +++ Sbjct: 623 QKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQ--- 679 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + IDRS +L+I+ND+LD SKIE+G+++L P L++ L++ + K Sbjct: 680 -DMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRSSLSAKP 738 Query: 684 I-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVI 738 + +I + +L D + Q+ +N++ NAI FT G ++ S + +++ Sbjct: 739 VEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKFKLL 798 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 VRDTG+G++ + PF Q S R G+GLGL +++ +V+ G+ + S P Sbjct: 799 FSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGELEVESVP 858 Query: 799 AKGT 802 +G+ Sbjct: 859 GRGS 862 >gi|114330247|ref|YP_746469.1| multi-sensor hybrid histidine kinase [Nitrosomonas eutropha C91] gi|114307261|gb|ABI58504.1| multi-sensor hybrid histidine kinase [Nitrosomonas eutropha C91] Length = 1221 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 100/380 (26%), Positives = 174/380 (45%), Gaps = 29/380 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S++E D + + G++LS N + KLFGY VE+ + + ++ + + S+ +Y+ Sbjct: 420 SVVEHMVDCVVSTDDRGVMLSVNPVMEKLFGYTVEEAIGQNVSILVPEPDRSMHEYYMQR 479 Query: 516 ILSLDLRQT--------------LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MH 559 Q L + G K+ ++ L + + + T M Sbjct: 480 YCETGYGQQYVGRPQLPGGHNVGLGREVEGVRKDGTVIPLYLAVSEYFVGDERHFTGIMR 539 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+ E + + L A+ AE + KS FLA +SHEIRTP+ +IG +V+ Sbjct: 540 DMREHVKIRQDLEQARHEAELANQAKSAFLAAMSHEIRTPMNGVIGMIDVLDQTSLSTYQ 599 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 E + I S +L+I+ D+LD SKIE+G++ + P+SL++ V A + A Sbjct: 600 R----EMTDLIRESAFALLEIIEDILDFSKIEAGRLEIEQTPISLEKVVERACGTLTHMA 655 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 K + + +P +L D ++QI +N+++NAI F+ ++ S E Sbjct: 656 ASKEVELTLFVDPALPEGVLGDALRLRQILINLINNAIKFSSGMSRLGRVAVRASPAEEV 715 Query: 737 ------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 V+ +V D G+GM + E+ PF Q S R GTGLGL + + +V+ G Sbjct: 716 DGDVVTVMFQVIDNGIGMDDAARERLFTPFSQGDASTTRRFGGTGLGLIICRRLVELMKG 775 Query: 791 KFYIFSTPAKGTLIEIIFPL 810 + + S P G++ + P Sbjct: 776 EISVESKPDVGSVFTVRIPF 795 >gi|110635903|ref|YP_676111.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium sp. BNC1] gi|110286887|gb|ABG64946.1| PAS/PAC sensor signal transduction histidine kinase [Chelativorans sp. BNC1] Length = 843 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 113/361 (31%), Positives = 177/361 (49%), Gaps = 19/361 (5%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP---FTVFLEQNTPSVMNHYLT 514 L+ ++G+A+ +G + +N A L+G P + L P ++ P M Sbjct: 484 LDNLAEGVAVFGPDGRLRLSNPAFRTLWGIP--EKLIGPDIHISILKAACDPVAMESPWA 541 Query: 515 EILSL-----DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569 E + D R+ G T+ +L I LP LT D+++ + Sbjct: 542 EFVGAVTGFDDERRDKH----GRTELINGAALHYAIVHLPNGQVM-LTFVDVTDSVNVER 596 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 L + EK K+DF+ VS+E+R+PLT IIGF+E++ + GPL NPR EY ++ Sbjct: 597 ALKEKNEALEKADRLKNDFVQHVSYELRSPLTNIIGFTELLGQETTGPL-NPRQREYVDH 655 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I S +L+L IVND+LD++ +++G M L V + V A LV E RI + + Sbjct: 656 IGSSSSLLLTIVNDILDLATVDAGIMELEIGEVEIRPLVKAATDLVADRLREHRIRLEVT 715 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 AD ++QI N+LSNA ++ P GG+I +S + T N + RV D G GM+ Sbjct: 716 VDAAPVSFHADENRIRQILYNLLSNAANYAPEGGKITLSASGTGN-AIEFRVHDNGPGMS 774 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L K F P+++ R G GLGL + K+ V+ + G I + P +GT + FP Sbjct: 775 PEVLATIFKRFE--PSAKGGRRRGAGLGLAIVKSFVELHGGTVDIDTAPGRGTAVTCRFP 832 Query: 810 L 810 + Sbjct: 833 M 833 >gi|255039493|ref|YP_003090114.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254952249|gb|ACT96949.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1204 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 107/368 (29%), Positives = 186/368 (50%), Gaps = 18/368 (4%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 I E D INR G I +++V K GY E+++ T F + Sbjct: 563 GIFENLQDIYCRINRLGEITMISQSVLKRLGYLPEEVIGHKITEFFADK-----KRIHSA 617 Query: 516 ILSLDLRQTLE--KITL---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 ++ L ++L +IT+ T+ + ++++ + + ++ DI+E K+ + + Sbjct: 618 LIRLRKTKSLRNFEITMYRKDGTERQFMINMLMFTNDKGKPTEVAVLARDITELKRNELE 677 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK+ AE+ K FLA +SHEIRTP+ +IG +++ PL N +Y I Sbjct: 678 LLKAKEHAERSLKVKEGFLANMSHEIRTPMNGVIGMIDLLGET---PL-NTEQKDYVLTI 733 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 RS +L+I+ND+LD+SKIE+GKM LH P++++E + + +SL A K + Sbjct: 734 KRSSETLLNILNDILDLSKIEAGKMELHEAPIAVEELLLKLVSLFGQTAKSKGNTLSYHV 793 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGV 746 +IP+ I+AD + QI N+ SNA+ FT +G + T + ++ + V+D+G+ Sbjct: 794 GPDIPKFIIADQTRLLQIMSNLTSNALKFTENGSVKVFLTLVKKDGLFHKIKVDVQDSGI 853 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G++ + + F Q+ NS + GTGLGL ++K + G+ + ST +G+ Sbjct: 854 GISATDKQILFTSFTQLDNSSRKSFGGTGLGLAISKQLCALMNGEIGVESTLGEGSTFWF 913 Query: 807 IFPLYDTS 814 F +TS Sbjct: 914 TFETKETS 921 >gi|322419867|ref|YP_004199090.1| integral membrane sensor hybrid histidine kinase [Geobacter sp. M18] gi|320126254|gb|ADW13814.1| integral membrane sensor hybrid histidine kinase [Geobacter sp. M18] Length = 1364 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 78/254 (30%), Positives = 136/254 (53%), Gaps = 3/254 (1%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + L K++ E+ + KS+FL+ +SHE+RTPL +++ S V+ Q L Sbjct: 567 ELARRNRVLDQQKQLLEEATRLKSEFLSNMSHELRTPLNSVLALSRVLAVQGAARLSVEE 626 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y I+++G +L ++ND+LD++KIESG+ +L FE V+ D+ +E + + + A+EK Sbjct: 627 R-GYLGIIEKNGKHLLSLINDILDLAKIESGRQDLFFEAVAPDKVAAEVVDGLAVLASEK 685 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 I + S +P ++ D++ ++Q+ N++ NA+ FT G + + N E++ V Sbjct: 686 GITLALSAPQALPSMVIDVKKLRQMLQNLVGNAVKFTAEGA-VTLRLAQLGN-ELLFEVE 743 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ L+ + F Q S EGTGLGL + K G+ + S KG+ Sbjct: 744 DTGIGIAPQYLDSIFQEFRQADGSTSRSYEGTGLGLAIVKKSARLLGGEVAVVSELGKGS 803 Query: 803 LIEIIFPLYDTSHP 816 + + PL + P Sbjct: 804 VFSLRLPLDCSGGP 817 >gi|120610741|ref|YP_970419.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] gi|120589205|gb|ABM32645.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] Length = 1622 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 140/258 (54%), Gaps = 8/258 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI++ ++ + +L AK++AE+ ++ KS+FLA +SHEIRTP+ AIIG S + Sbjct: 845 TLVDITDRQRAERELRRAKELAEETTALKSNFLANMSHEIRTPMNAIIGMSHLALKSGL- 903 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PR +Y I ++G +L ++ND+LD S+IE+GK+ + +P LD + +V Sbjct: 904 ---TPRQADYVAKIQQAGQHLLGVINDILDFSRIEAGKLVVEKQPFMLDRVLEGMADVVG 960 Query: 677 LYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 A K + + A ++ P ++ D + QI +N +NAI FT G + + Sbjct: 961 YKAGVKGLELVLDVAPDVPPHLVGDALRLGQILINFANNAIKFTERGEIHVRVRVVERHG 1020 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 V+LR VRDTG+G+ ++ + + F Q S R G+GLGL ++K + + G+ Sbjct: 1021 RRVLLRFEVRDTGIGVAPEQMGRLFQSFQQADASTTRRFGGSGLGLAISKNLAELMGGEV 1080 Query: 793 YIFSTPAKGTLIEIIFPL 810 S +G+ ++ PL Sbjct: 1081 GAESVLGEGSTFWVMLPL 1098 >gi|262197212|ref|YP_003268421.1| integral membrane sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262080559|gb|ACY16528.1| integral membrane sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 835 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 81/256 (31%), Positives = 134/256 (52%), Gaps = 10/256 (3%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + L + A + KS+FLA +SHEIRTPL+ +IG SE++ R G R E Sbjct: 257 ESRRALEDEAREARATAQAKSEFLATMSHEIRTPLSGVIGMSELLLGGRLS--GEQR--E 312 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 +A ++ S +L ++ND+LD SK ESG + L P L + + ++ A +KRI Sbjct: 313 FAETLNTSAEALLSLINDILDFSKFESGHLELEEVPFDLQALTEDVVQILGSRARKKRID 372 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR---- 740 + + NN+PR + D ++QI LN++ NA+ FT G ++++ H + + +R Sbjct: 373 LIARYDNNLPRFFVGDPGRIRQILLNLVGNAVKFTER-GHVLLAVHHNGDSDDKIRLHFE 431 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+G+ L F Q+ + + R GTGLGL +++ +V+ G+ + S K Sbjct: 432 VEDTGIGIPENSLPHIFDRFIQVTSGEARRFGGTGLGLAISRQLVERMSGQISVSSVLGK 491 Query: 801 GTLIEIIFPLYDTSHP 816 G+ + PL P Sbjct: 492 GSTFRFLLPLQVDPEP 507 >gi|298528280|ref|ZP_07015684.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511932|gb|EFI35834.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 940 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 82/273 (30%), Positives = 146/273 (53%), Gaps = 12/273 (4%) Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS----HKSDFLARVSHEIRTPLT 601 + + F S +++ + +S E + H +K+A +++ KS+FLA +SHEIRTP+ Sbjct: 442 RAMQFYSRFAMLISSLSWSNLELARSVHEQKVATQQADVANKAKSEFLANMSHEIRTPIN 501 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I+G +++++ +P EY N S + + +++D+LD+S+IE+G+M + E Sbjct: 502 GIMGILQLLQSTEL----SPEQQEYTNMGIVSASRLTRLLSDILDLSRIEAGQMEIRKEQ 557 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTP 720 V L + L + + EK I + + +P++L D ++QI N++ NA+ FT Sbjct: 558 VDLKKLCDSVDELFMVTSREKDISLEFTQDPCLPQVLLGDEARLQQIVFNLVGNALKFTQ 617 Query: 721 SGGQII---ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 G + + + V+L V DTG+GMT+ L++ KPF Q N+ R +G GLG Sbjct: 618 EGRISVNWHLQQRRGRDARVLLTVSDTGIGMTDDTLDELFKPFAQAENAFTRRYQGAGLG 677 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 L + K +V+ G + STP +G+ + PL Sbjct: 678 LSIVKRLVELMHGTLAVDSTPGQGSTFFVSLPL 710 >gi|148509171|gb|ABQ81808.1| GacS [Pseudomonas alkylphenolia] Length = 917 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 142/237 (59%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y Sbjct: 270 ELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQLDYLGT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRT 688 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ Sbjct: 326 IEKSASSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELVSL 385 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTG 745 + + ++ D +KQI N++SNAI FT G + ++ H + ++ + V+DTG Sbjct: 386 VYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVTRAMLEEEHGDSVQLRICVQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|91216331|ref|ZP_01253298.1| sensory box histidine kinase/response regulator [Psychroflexus torquis ATCC 700755] gi|91185469|gb|EAS71845.1| sensory box histidine kinase/response regulator [Psychroflexus torquis ATCC 700755] Length = 1325 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 116/391 (29%), Positives = 193/391 (49%), Gaps = 37/391 (9%) Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVE 490 G + D ++ ++ ++ V Q +I E + GI I + + G L N+A+ + GY + Sbjct: 535 GTHHDITDKKVLEKDLKKNVQQFKNIFELSPVGIIITDFKSGNFLDVNKAMQDMVGYTKD 594 Query: 491 DILR------KPFTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSLR 542 +IL P +E++ ++ N DL++ LEK+ T E ++ Sbjct: 595 EILDMNIWSITPEKEVVEKDRQAIQNLK-------DLKKIGPLEKVLKAKTGE----FIK 643 Query: 543 IIIKKLPF-----SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 ++I L + T+ DI+E K+ + KL +K A K S KS+F+A +SHEIR Sbjct: 644 VMINGLIHFNEDGNRIVISTIQDITEQKRFEKKLEKSKVEAIKASQAKSEFVANMSHEIR 703 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TPL +IGFS+++ PL ++ +Y + +S N +LD++ND+L+ SKIESGK+ L Sbjct: 704 TPLNGVIGFSDLLMKT---PLNEVQH-KYMKTVFQSANTLLDLINDVLNFSKIESGKLQL 759 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716 E SL + V+E + L + A++K + + IP I D +KQI +N++SNAI Sbjct: 760 DIEKTSLIKLVNEVVDLTKYDAHKKGLEFVLVIEDKIPDYIWIDGVRLKQILMNLISNAI 819 Query: 717 HFTPSGGQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 FT G + H N+ + V D G+G+ +K F Q S + Sbjct: 820 KFTHRG--YVKLKVHFKNKTNNLTTISFSVEDKGIGIAKGNQKKIFNAFIQEDASVTKKY 877 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GTGLGL ++ ++ K + S G+ Sbjct: 878 GGTGLGLSISGKILGLMNSKLKLKSQLGIGS 908 >gi|291570267|dbj|BAI92539.1| two-component sensor histidine kinase [Arthrospira platensis NIES-39] Length = 623 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 82/251 (32%), Positives = 134/251 (53%), Gaps = 6/251 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQRFGPLG 619 K+ L A A+ + KS+FLA +SHE+RTPLT +IG S + + + F L Sbjct: 227 KERTQALHDALLAAQCANRAKSEFLATMSHELRTPLTHVIGISSTLLRLYSQPENFPALP 286 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + Y I SG +L ++ND+LD+S++ESGK L SL + + + ++ +A Sbjct: 287 LEKQKHYLQTIHDSGENLLALINDILDLSQVESGKTVLKISQFSLGKMAQQCLHTLRDFA 346 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 EK + + + AD R V+QI LN+LSNAI FTP GG++ ++ + ++ I Sbjct: 347 KEKGVNLYLKMKVDQDLFRADYRRVRQILLNLLSNAIKFTPKGGRVTLTVSR-KDKMAIF 405 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 +V+DTG+G++ + + F Q+ + + + GTGLGL L K +V+ + G S Sbjct: 406 QVKDTGIGISKEQQSLLFEKFQQLDSPYRRQYGGTGLGLALTKQLVELHGGSIQFESVIG 465 Query: 800 KGTLIEIIFPL 810 GT + P+ Sbjct: 466 LGTKFTVYIPI 476 >gi|322421925|ref|YP_004201148.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320128312|gb|ADW15872.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 951 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 80/238 (33%), Positives = 134/238 (56%), Gaps = 10/238 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A + A+ S KS FLA +SHEIRTP+ ++G +E++ R + + + + Sbjct: 267 ELQRAMEAAQAASRAKSQFLANMSHEIRTPMNGMLGMAELLMATRL----DEQQRRFVSS 322 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + RSG +L I+ND+LD SKIE+GK+ L +L++ V++ I L+ A+ K + I Sbjct: 323 VRRSGEALLSIINDILDFSKIEAGKLELEETAFNLEDTVADVIELLAETAHRKGLEIAAL 382 Query: 690 FANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTT----HTSNEEVILRVRDT 744 N++P + L D V Q+ +N++ NA+ FT G++IIS H V++RV DT Sbjct: 383 VENDVPPVLLGDQVRVHQVLMNLVGNAVKFTDQ-GEVIISGMLKEEHKEEVTVLIRVSDT 441 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G+++ + F Q NS + GTGLGL +A+ +V+ G+ + S +G+ Sbjct: 442 GIGISDEVKGRIFDGFSQADNSTTRKYGGTGLGLTIARQLVELMGGEIGVESEVGRGS 499 >gi|117925742|ref|YP_866359.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609498|gb|ABK44953.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 969 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 81/268 (30%), Positives = 139/268 (51%), Gaps = 12/268 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K+ + L A++ AE + KSDFLA +SHEIRTP+ A+IG EV+ + Sbjct: 574 DITEQKEVETTLRLAREQAESANRAKSDFLAAMSHEIRTPMNAVIGMGEVLLETKL---- 629 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + Y + +G +LD++N +LD+SKIESG+M L + L + V E L Q+ Sbjct: 630 DQEQRHYIETLQHAGEALLDLINAILDLSKIESGRMELVEQDFDLHKMVVETCQLFQVQC 689 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 ++ I + ++ + P I D ++QI N++ NA+ FT G + + + ++ Sbjct: 690 RKQGIELNLNWEESNPTYIHGDQARIRQILFNLIGNAVKFTDEGSVTVEIRSIEQEKTLL 749 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 ++ D+G+G+ + E + F Q +S R G+GLGL + + +V+ G+ ++ S Sbjct: 750 FKITDSGIGIPADKQETIFQKFSQADSSLSRRHGGSGLGLTICRHLVEHMKGRIWVDSEE 809 Query: 799 AKGTLIEIIFPLYDT-------SHPHDC 819 +G+ P T S+PHD Sbjct: 810 GQGSCFSFTLPCRPTAPKAEIISNPHDA 837 >gi|296132713|ref|YP_003639960.1| integral membrane sensor signal transduction histidine kinase [Thermincola sp. JR] gi|296031291|gb|ADG82059.1| integral membrane sensor signal transduction histidine kinase [Thermincola potens JR] Length = 547 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 100/269 (37%), Positives = 155/269 (57%), Gaps = 14/269 (5%) Query: 558 MHDISEWKQEK-----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 +HDI E + K +L+ A K + S +K++FLA +SHE+RTPLTAI+ F+E + Sbjct: 281 LHDIYEQLESKVAERTAELAAANKELAEISQYKTEFLANMSHELRTPLTAILAFTEELLT 340 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + G L N EY I SG +L+++NDLLD+SKIESGKM L+ V++ EAV Sbjct: 341 KSMGQL-NAEQEEYLKDIRDSGRQLLNLINDLLDLSKIESGKMALNLTEVNVGEAVRGVE 399 Query: 673 SLVQLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI--IIST 729 L++ A +K I ++++ N+ I+AD V+Q+ N+L NAI FTP+GG+I + Sbjct: 400 KLLRPLAQQKNIDMQSAITGTNV--IIADEEKVRQVIRNLLGNAIKFTPAGGRIELYVRD 457 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 T +E V+L V+D+G G+ + + F Q + GTGLGL L K +V+ ++ Sbjct: 458 TDRPDEGVLLTVKDSGPGIPAKDRARIFDSFYQGHRGRNKEYGGTGLGLALVKRIVEMHL 517 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 G+ + ST +G+ + P Y P+D Sbjct: 518 GEITLESTEGQGSAFTVYLPAYP---PYD 543 >gi|304309810|ref|YP_003809408.1| Putative two-component sensor histdine kinase [gamma proteobacterium HdN1] gi|301795543|emb|CBL43741.1| Putative two-component sensor histdine kinase [gamma proteobacterium HdN1] Length = 816 Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 132/242 (54%), Gaps = 8/242 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 KQ+ L A++ A+ ES KS FLA++SHEIRTP+ +IG +++++ + + + Sbjct: 399 KQQVQSLLAARE-AQTESRAKSQFLAQMSHEIRTPMNGVIGMADLLRQTKL----DVQQK 453 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +Y + I SG +L I+ND+LD SKI +GKM+L P+ + V E I L L A EK I Sbjct: 454 QYLDIIVNSGRTLLTIINDILDFSKIAAGKMDLEIRPIDFKQIVRECIQLFTLPAEEKAI 513 Query: 685 LIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--V 741 ++ + P I D ++Q+ N+LSNA+ FT GG + + E L+ V Sbjct: 514 YLKKDWKEGASPIIYGDSTRLRQVLTNLLSNALKFTEKGGITLRVKPCLRDSEPYLQVEV 573 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G++ ++ F Q S R GTGLGL ++K +V+ G+ + S G Sbjct: 574 EDTGIGISVENQQRLFSAFSQAEASTTRRFGGTGLGLAISKQLVELMGGEIGVRSEEGVG 633 Query: 802 TL 803 ++ Sbjct: 634 SI 635 >gi|220924442|ref|YP_002499744.1| histidine kinase [Methylobacterium nodulans ORS 2060] gi|219949049|gb|ACL59441.1| histidine kinase [Methylobacterium nodulans ORS 2060] Length = 900 Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 104/392 (26%), Positives = 200/392 (51%), Gaps = 38/392 (9%) Query: 437 DVDTRINKRKMEIEVMQ--LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 +++TR+ R E+ + L L+A G+ +++ G++ TNR +++ + Sbjct: 355 ELETRVAARTRELAEKEALLTMTLDAMDQGLVMVDARGVVAVTNRRFAEILDLDPAFLAS 414 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLD-----LRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 +P T M+ L E + +R L+ L + + + +R + L Sbjct: 415 RP--------TDEAMSRALDEAGAFASAGPAVRAGLQADDL-APPDARCERVRPNGQVLE 465 Query: 550 FSSCYS-----LTMH-DISEWKQEKNKLSHAKKIA-------EKESSHKSDFLARVSHEI 596 +S + L ++ D++ ++ + L+ A +IA E S+ KS+FLA +SHEI Sbjct: 466 VTSTATADGGILRIYTDVTARRKAEAALAEAHRIAQVARREAEAGSAAKSEFLATMSHEI 525 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPLT ++G+++++ Q P + I +G +L IV+D+LD SKIE+G++ Sbjct: 526 RTPLTGVLGYADLLTAQSDL---APEHRRLVGRIRSAGEALLTIVDDVLDFSKIEAGEIT 582 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNA 715 L +P S + V EA++LV+ A+ K++ + IP R++ D+ ++Q+ LN+L+NA Sbjct: 583 LDPKPFSPAQLVDEALALVRAAADRKQLALSARIDPAIPERLVGDVGRLRQVLLNLLNNA 642 Query: 716 IHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 + FT +G + + + + + V DTG+G+ + + + F Q+ S Q Sbjct: 643 VKFTRAGSVTVTVACEPAGPDAQDCPIRICVTDTGIGIPEEKRGRLFQRFSQVDGSIQRH 702 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 EGTGLGL +++ +++A G+ + S +G+ Sbjct: 703 YEGTGLGLAISRRLIEAMNGRIDVDSRAGEGS 734 >gi|153836217|ref|ZP_01988884.1| sensory transduction protein kinase [Vibrio parahaemolyticus AQ3810] gi|149750492|gb|EDM61237.1| sensory transduction protein kinase [Vibrio parahaemolyticus AQ3810] Length = 1051 Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 90/251 (35%), Positives = 140/251 (55%), Gaps = 15/251 (5%) Query: 563 EWKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 E +Q K KL+ AK+ AE+ S KS FLA +SHEIRTPL +IG SEV+ + Sbjct: 366 EREQAKQKLTKAKEDAERAKDDAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLAD--- 422 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 PL + +Y + I+ S L+L ++ND+LD SKIESG + + + E++ + S+V Sbjct: 423 TPLTATQR-DYVDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIV 481 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A EK I + S + N P I+ D ++Q+ +N +SNA+ FT G + TT SN Sbjct: 482 SPKAKEKGIELTVSISPNTPYHIVIDDHRLRQVIMNFMSNAVKFTERGSVELSITTLESN 541 Query: 735 E-EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 E E I+ V+D+G+G+ + ++ PF Q +S + GTGLGL ++ +V+ G Sbjct: 542 ESEAIIEFSVQDSGIGIDEQQQKRIFAPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGS 601 Query: 792 FYIFSTPAKGT 802 + S +G+ Sbjct: 602 IQLESEKGRGS 612 >gi|154250574|ref|YP_001411398.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154154524|gb|ABS61741.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 861 Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 84/255 (32%), Positives = 133/255 (52%), Gaps = 4/255 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +T D+++ + + L E KS+F++ VS+++RTPLT I+GF E+++ + F Sbjct: 590 MTYVDVTDSTRMEQALRDRNDALETADRLKSEFISHVSYQLRTPLTNILGFGEILETEMF 649 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GPL +PR EY I S ++D+VND+LD++ IE+G M L V L E + Sbjct: 650 GPL-SPRQHEYMQGILESSETLIDVVNDILDLAVIEAGAMTLDLSDVELSEVIYATEEFA 708 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 Q A + ++ +R +I + AD + +KQI +N+LSN++ FT G I+I N Sbjct: 709 QRPAQKNKVTLRVECPKDIGIVRADEKRIKQIMINLLSNSLAFTSPGDTIVIGAARRDN- 767 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V L V DTG G+ F +S + R G GLGL L ++ V+ + G + Sbjct: 768 SVELYVEDTGDGIKPEFQSNVFDRFEAHSSSDRRR--GAGLGLSLVRSFVELHGGWVTLE 825 Query: 796 STPAKGTLIEIIFPL 810 S P GT + P+ Sbjct: 826 SAPDVGTRVTCHLPV 840 >gi|163846813|ref|YP_001634857.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222524634|ref|YP_002569105.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163668102|gb|ABY34468.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222448513|gb|ACM52779.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 537 Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 126/231 (54%), Gaps = 2/231 (0%) Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 K + K +FLA +SHEIRTPLTAI+G ++++ Q GPL + + + + I + +L Sbjct: 152 KTTKIKDEFLASMSHEIRTPLTAILGMVDLLRAQLVGPLSDEQ-MGAIDGIKKGSQHLLS 210 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699 ++ND LDI+K+E+G+M L PVS+ + LV + + + + ILA Sbjct: 211 LINDYLDIAKVEAGRMELDLTPVSVQDVCMSLRPLVADLIRRANLSLIFDIDSAVQVILA 270 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMK 758 D R ++QI +N+LSNAI FTP+GG++ + + V DTG+G++ + + + Sbjct: 271 DARRLRQILINLLSNAIKFTPAGGKVGLEVRGEPERGAVRFTVWDTGIGISAEDAVRLFE 330 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 PF QI + +Q G+GLGL L +V + G + S G+ + P Sbjct: 331 PFQQIESERQKEVTGSGLGLALVAKLVRLHGGSVRVESEVGVGSRFHVTLP 381 >gi|282898162|ref|ZP_06306153.1| Histidine Kinase [Raphidiopsis brookii D9] gi|281196693|gb|EFA71598.1| Histidine Kinase [Raphidiopsis brookii D9] Length = 624 Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 87/275 (31%), Positives = 145/275 (52%), Gaps = 12/275 (4%) Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 + I K + +S Y + I K L E ++ K+ FLA SHEIRTPLT Sbjct: 196 QFIQKAIKYSWTYLIQTQKIQTLKYSYQSLLQFSYNLEHKNKLKNQFLANTSHEIRTPLT 255 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 +IIGF+E++ Q + R+ EY I SG +L ++ND+LD+SKIE+ ++ + +E Sbjct: 256 SIIGFTELLLAQGYQA-ERERHQEYLQIIQSSGKHLLSLINDILDLSKIEANQLEVQWEV 314 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + ++LV+ A +K + ++ + ++ +L D +KQ+ LN+L NAI FT Sbjct: 315 VDIPSLCKSVLALVKEKAGDKGLKLQIQISEDVSTLLVDPLRLKQMLLNLLFNAIKFTNV 374 Query: 722 GG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP---NSQQIRGEGTG 775 G +++I + + V DTGVG++ +L +P+ Q+ N+Q + GTG Sbjct: 375 GSVGLRVVI-----KDSWLRFTVWDTGVGISEEDLSLLFRPYTQLVNTINTQIDKNHGTG 429 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 LGL + K + + + G + S +G+ II PL Sbjct: 430 LGLIVTKQLAEIHGGSIEVRSQLNQGSEFTIILPL 464 >gi|326317893|ref|YP_004235565.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374729|gb|ADX46998.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 1624 Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 140/258 (54%), Gaps = 8/258 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI++ ++ + +L AK++AE+ ++ KS+FLA +SHEIRTP+ AIIG S + Sbjct: 847 TLVDITDRQRAERELRRAKELAEETTALKSNFLANMSHEIRTPMNAIIGMSHLALKSGL- 905 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PR +Y I ++G +L ++ND+LD S+IE+GK+ + +P LD + +V Sbjct: 906 ---TPRQADYVAKIQQAGQHLLGVINDILDFSRIEAGKLVVEKQPFMLDRVLEGMADVVG 962 Query: 677 LYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 A K + + A ++ P ++ D + QI +N +NAI FT G + + Sbjct: 963 YKAGVKGLELVLDVAPDVPPHLVGDALRLGQILINFANNAIKFTERGEIHVRVRVVERHG 1022 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 V+LR VRDTG+G+ ++ + + F Q S R G+GLGL ++K + + G+ Sbjct: 1023 RRVLLRFEVRDTGIGVAPEQMGRLFQSFQQADASTTRRFGGSGLGLAISKNLAELMGGEV 1082 Query: 793 YIFSTPAKGTLIEIIFPL 810 S +G+ ++ PL Sbjct: 1083 GAESAVGEGSTFWVMLPL 1100 >gi|309388338|gb|ADO76218.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium praevalens DSM 2228] Length = 921 Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 81/256 (31%), Positives = 141/256 (55%), Gaps = 12/256 (4%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E K + +L A+ A + S KS+FL+ +SHEIRTP+ +IIG +E+++ + Sbjct: 380 NELKLKNLELKQARDKAMEASRAKSEFLSTMSHEIRTPMNSIIGMAELLQETEL----SE 435 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + +Y N +G +L ++ND+LD+SKIE+G++ L E +L E V ++ L A + Sbjct: 436 QQQKYINIFQNAGESLLTLINDILDLSKIEAGRIELEAEKFNLVETVENIAEMISLRAFK 495 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS------N 734 K + + A +P ++ D ++QI +N+L NA+ FT G Q+ + S Sbjct: 496 KGLELPLRIAAEVPECVIGDSERIRQILINLLGNAVKFTEKG-QVFLDLRIDSEFKSKDQ 554 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 ++VI ++DTG+G+ + ++ F Q +S + GTGLGL ++K +V+ GK ++ Sbjct: 555 KQVIFAIKDTGIGIEKAKQKQIFDSFTQADSSSTRKYGGTGLGLTISKQLVELMGGKIWL 614 Query: 795 FSTPAKGTLIEIIFPL 810 STP G+ PL Sbjct: 615 KSTPQLGSTFYFSLPL 630 >gi|124268874|ref|YP_001022878.1| PAS/PAC sensor hybrid histidine kinase [Methylibium petroleiphilum PM1] gi|124261649|gb|ABM96643.1| PAS/PAC sensor hybrid histidine kinase [Methylibium petroleiphilum PM1] Length = 833 Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 83/263 (31%), Positives = 151/263 (57%), Gaps = 7/263 (2%) Query: 546 KKLP-FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 ++LP S+ + + DI++ KQ + + A + + K++FL+R+SHE+RTPL A++ Sbjct: 418 ERLPDGSTTWHGYIRDITDRKQ-ADAALMNAQAAARANEAKTEFLSRMSHELRTPLNAVL 476 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 GF++++ PL + + +I+R+G +L ++ D+LD+S+IE+G + L +PV L Sbjct: 477 GFTQLLLGDPSAPLQDGQRARL-GHIERAGQHLLAMIGDVLDLSRIETGSLPLQPQPVGL 535 Query: 665 DEAVSEAISLVQLYANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 VSE+ +LV A+ + LIR + + AD ++Q+ +N+LSNA+ + SGG Sbjct: 536 SALVSESFALVLPTAHASGVTLIRRGPGDL--HVTADPMRLRQVLVNLLSNAVKYNRSGG 593 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 Q+++ T V + V DTG+GMT + +PF ++ +++ EGTGLGL + Sbjct: 594 QVVVETEGIDEHTVRIAVTDTGMGMTPAQQLHLFEPFNRL-GAERSSIEGTGLGLAITLR 652 Query: 784 MVDANMGKFYIFSTPAKGTLIEI 806 +V+ G+ + S P G+ + Sbjct: 653 LVELMDGRISVHSQPGSGSTFHV 675 >gi|148263292|ref|YP_001229998.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146396792|gb|ABQ25425.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 637 Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 91/372 (24%), Positives = 188/372 (50%), Gaps = 28/372 (7%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +++ E + ++L ++E++ D I +GII S NR K+FGY +++L KP T+ + Sbjct: 288 RKQAEEKNLRLAVMVESSDDAIVGKTLDGIITSWNRGAEKIFGYSEDEVLGKPITMLIPA 347 Query: 504 NTPSVMNHYLTEILSLDLR----QTLEKI-TLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558 + E+L +D R + +E T+ K+ +L+ + + + + + + Sbjct: 348 EN-------VDEVLQMDERLRHGEHIEHFETVRRRKDGQLIHMSLSYSPIRDAQGRVVAV 400 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 I E+ ++ K + ++ VSHE+RTPLTA++G++E + + P Sbjct: 401 STIGRDITERKEMEQMK----------DEMISAVSHEMRTPLTAMLGYTEFMLDNEV-PA 449 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 R EY + +++ + LD+ ++ S K + + P+ L + E ++L Sbjct: 450 DQQR--EYLRITLHESEKLNELIGNFLDLQRLRSRKETVTWRPLPLQPLLEETVALFTRV 507 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + I + +++PRI D + ++Q+ N++SNA+ ++P GG + ++ + V+ Sbjct: 508 SERHHITL--DCPSDLPRICGDNKQLRQVFNNLVSNAVKYSPKGGAVRVAARR-EKDCVV 564 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + VRD G+G++ +E+ + F ++ N+ GTGLGL L + +V A+ G+ ++ ST Sbjct: 565 ITVRDEGIGISPQAVERIFERFYRVNNTACRVFGGTGLGLALVREIVTAHGGEVWVESTL 624 Query: 799 AKGTLIEIIFPL 810 KG+ + P+ Sbjct: 625 GKGSTFFVSLPV 636 >gi|87307352|ref|ZP_01089497.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] gi|87290092|gb|EAQ81981.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] Length = 830 Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 88/256 (34%), Positives = 145/256 (56%), Gaps = 9/256 (3%) Query: 564 WK--QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE-VIKNQRFGPLGN 620 WK Q ++L A+ AE + KS FLA +SHE+RTP+TAI+GF+E ++++ +G L Sbjct: 392 WKIVQSHDELLAAQHRAESANLAKSRFLATMSHELRTPMTAILGFTENLLESPDYGSLEE 451 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 E N I R+G +L +++D+LD+SKIE+G+ + E S + +E I +++ A Sbjct: 452 RN--ETLNTILRNGEHLLGLIDDVLDLSKIEAGRTEIQTELCSPGQIANEVIGILKKRAA 509 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI 738 +R+ +R IP I D ++QI LN++ NA+ FT GG + +S+T + Sbjct: 510 SRRLTLRIRCKTPIPAEIETDALRLRQILLNLVGNALKFTEKGGISLELSSTFGDVGRRM 569 Query: 739 LRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 LRVR DTG G+ + +LE +PF Q+ ++ G GLGLP+++ + + G + S Sbjct: 570 LRVRVEDTGPGIPSDQLEHIFEPFVQVDSTTSRSFGGAGLGLPISRRLAELLGGTLIVES 629 Query: 797 TPAKGTLIEIIFPLYD 812 T G+ + P+ D Sbjct: 630 TIGTGSAFTLSVPVGD 645 >gi|171915309|ref|ZP_02930779.1| Multi-sensor Hybrid Histidine Kinase [Verrucomicrobium spinosum DSM 4136] Length = 1205 Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 82/247 (33%), Positives = 134/247 (54%), Gaps = 8/247 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E ++ +N+L AK+ AE + K +FLA +SHEIRTP+ IIG S ++ + Sbjct: 534 DITERRRFENELRMAKEQAESANRAKGEFLATMSHEIRTPMNGIIGMSGLLLETKL---- 589 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + I SG ++DI+ D+LD SKIE+ +++L E SLD + + L+ Sbjct: 590 ESSQRDMVDAIRTSGEALMDIIEDILDFSKIEARRLDLVEETFSLDAVIDGVVDLLNHKI 649 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNE 735 K + + ++P + D ++QI N++ NA FT G I ++ N Sbjct: 650 QSKGLTMGVILDPDVPLSMRGDAGRLRQILFNLMGNASKFTDEGEVNLFISVARGPGGNN 709 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V DTG+GMT ++E+ +PF Q+ +S R GTGLGL ++K +V+ G ++ Sbjct: 710 MLEFTVADTGIGMTPQQIERLFQPFSQVDSSSTRRFGGTGLGLVISKRLVEMMGGAIHVE 769 Query: 796 STPAKGT 802 STP KG+ Sbjct: 770 STPGKGS 776 >gi|144898551|emb|CAM75415.1| two-component sensor/response regulator hybrid [Magnetospirillum gryphiswaldense MSR-1] Length = 1123 Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 107/389 (27%), Positives = 180/389 (46%), Gaps = 32/389 (8%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 +E E L +I + +DG+ +++ G+I+ N A + GY ++L Q Sbjct: 343 LEHERASLKAITDTMADGLFVMDNHGLIVLANPAACAMLGYEENEMLG-------HQAHA 395 Query: 507 SVMNHYLTEILSLDLRQTLEKITLG---------STKEEKLLSLRIIIKKLPFSSCYSLT 557 +H + + L + + ++ G S K+ +++++ + +P LT Sbjct: 396 LFHSHAVNDHLPISECPVFKAVSGGKPYAGEEYFSHKDGRVIAMDV--ASMPLVQDGQLT 453 Query: 558 -----MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 DI+ K+ + L AK AE+ + KSDFLA +SHEIRTP+ IIG + ++ + Sbjct: 454 GSVNAFRDITPRKETEQALIAAKHAAERANMAKSDFLATMSHEIRTPMNGIIGMTSLLLD 513 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 N Y N I S +L I+ND+LD SK+E+GK+ P L V + Sbjct: 514 THLSSEQN----YYTNTIRVSAESLLTIINDILDFSKMEAGKLEFEETPFLLTPLVEGVV 569 Query: 673 SLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 ++ A K I + + + R+ ++D ++Q+ LN+ NA+ FT G I T Sbjct: 570 DILAPRAKAKGIGLTFAVPRDASRVFISDAGRLRQVLLNLAGNAVKFTEKGSVAITVTLE 629 Query: 732 TSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 +E E + DTG+G+ + + F Q +S + GTGLGL + + +V+A Sbjct: 630 PKDETCVEACFAITDTGIGIPDEAKSRLFSRFTQADSSTARKFGGTGLGLVICQRIVEAL 689 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 G STP +G+ FPL PH Sbjct: 690 GGAIGFDSTPGQGSRFWFQFPLR-LGDPH 717 >gi|260893731|ref|YP_003239828.1| integral membrane sensor signal transduction histidine kinase [Ammonifex degensii KC4] gi|260865872|gb|ACX52978.1| integral membrane sensor signal transduction histidine kinase [Ammonifex degensii KC4] Length = 546 Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 83/251 (33%), Positives = 136/251 (54%), Gaps = 7/251 (2%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + +L A + + + KS+ LA VSHE+RTPLTA++ ++E++ + GPL + Sbjct: 300 ERTKELQKANEELARANQFKSEILANVSHELRTPLTAVLAYTEMLLDPTTGPLTPEQREC 359 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 N D S L+L+I DLL ++++E+G+ L +EP + E V E SL+ A +KRI Sbjct: 360 LENIADSSKELLLEI-TDLLQMARLEAGRKELFYEPFDMAEVVQEVFSLLGPLARKKRIK 418 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--SNEEVILRVRD 743 + +LAD VK I N++SNAI FT GG++ + ++ + ++++V D Sbjct: 419 LCGPEERGEWWVLADRAKVKHILTNLVSNAIKFTSEGGKVTVKLSYGFDTTRYMLVKVTD 478 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TGVG+ E E + F + Q GTGLGL L + +V + G+ ++ S P +G+ Sbjct: 479 TGVGIDPAEQEVIFEKFYRSKKHSQ----GTGLGLTLVRELVQLHGGRVWVESIPGQGSS 534 Query: 804 IEIIFPLYDTS 814 PL + S Sbjct: 535 FYFTLPLKEES 545 >gi|227823950|ref|YP_002827923.1| sensor protein [Sinorhizobium fredii NGR234] gi|227342952|gb|ACP27170.1| sensor protein [Sinorhizobium fredii NGR234] Length = 917 Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 112/380 (29%), Positives = 182/380 (47%), Gaps = 15/380 (3%) Query: 442 INKRKMEIEVMQ----LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-KP 496 I K+K+E E + + + LEA SDG + + + IL N ++F + LR K Sbjct: 271 IEKKKLEDEAERQRRTIAAALEAISDGFVLYDPDDKILVANSRYCEIFPSHKPNELRGKS 330 Query: 497 FTVFLEQNTPS----VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 F LEQN + E + LR + L + +RI +K+P Sbjct: 331 FREILEQNLAKGKVDLEGKAPEEWIEDRLRLHRDPAGLADERRFDDKWVRITKRKIPDGG 390 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 ++ DI+E KQ + +L AK AE S KS FLA +SHE+RTPL AIIG+SE++ Sbjct: 391 TVAV-YTDITELKQRQAELERAKSNAEAASEAKSRFLASMSHELRTPLNAIIGYSEMLIE 449 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + G + I +G +L ++ND+LD+SKIE+ KM + E + + + + Sbjct: 450 EAHDH-GENELVPDLEKIASAGRHLLALINDILDLSKIEANKMEVFLESFGVAQLLGDVS 508 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + V + R F ++ + +D ++Q N+LSNA FT +GG++ +S Sbjct: 509 ATVAPLMAKNRNAFVQEFDGDLGEMHSDQTKLRQNLFNLLSNAAKFT-TGGRVTLSARRE 567 Query: 733 SNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + ++ +V DTG+GMT +L++ F Q S GTGLGL + ++ Sbjct: 568 GRADGDWLVFKVSDTGIGMTPEQLDRLFNAFTQADASTTRNYGGTGLGLSITRSFSRMIG 627 Query: 790 GKFYIFSTPAKGTLIEIIFP 809 G + S KG++ + P Sbjct: 628 GIVNVESEAGKGSVFTMEVP 647 >gi|146281507|ref|YP_001171660.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri A1501] gi|145569712|gb|ABP78818.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri A1501] Length = 1239 Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 103/373 (27%), Positives = 186/373 (49%), Gaps = 30/373 (8%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 ++EA+ + +++ +G I+ NR LFGY +++L +P + L + Sbjct: 472 VVEASPNAFVLVDTQGSIVMVNRQTELLFGYTRQELLGQPVELLLPEALRDAHR------ 525 Query: 517 LSLDLRQTL----EKITLGSTKEEKLL-----SLRIIIKKLPFSS----CYSLTMHDISE 563 LRQ E +GS +E L +L + I P S + DIS Sbjct: 526 ---GLRQGYTEHPEPRRMGSNRELFGLHRDGSALPVEIGLSPLRSGDEQLVQAVIIDISH 582 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K + +L + +KS+FLA +SHE+RTPL +I+ S+ ++ G L N + Sbjct: 583 RKAAERRLREQADQLAVANRYKSEFLANMSHELRTPLNSILILSDQLRQNGAGNL-NDKQ 641 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + +A+ I R+G+ +L ++ND+LD++KIESG M L EP++L + + + + + A +K Sbjct: 642 VRHADIIHRAGHELLQLINDVLDLAKIESGHMQLKLEPLNLRDLLRDLEASLGSMAAQKG 701 Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQI-----IISTTHTSNEEV 737 + + +P L +D ++QI N+L+NA+ FT GQ+ ++ + + Sbjct: 702 LSLTMEVDPAVPLTLNSDRARLQQILNNLLTNALKFTEK-GQVELTASLLPADQDGRQML 760 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 L+VRD+G+G+ + E+ + F QI S GTGLGL + + +V+ G+ + S Sbjct: 761 QLQVRDSGIGIAKDQQERIFQAFQQIDGSISRHYGGTGLGLAITRQLVEVLGGQVMVNSE 820 Query: 798 PAKGTLIEIIFPL 810 +G ++ P+ Sbjct: 821 LGQGATFTVLLPV 833 >gi|149187870|ref|ZP_01866166.1| sensory transduction protein kinase [Vibrio shilonii AK1] gi|148838266|gb|EDL55207.1| sensory transduction protein kinase [Vibrio shilonii AK1] Length = 916 Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 135/246 (54%), Gaps = 8/246 (3%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I E ++ ++++ AK+ AE+ + KS FLA +SHEIRTPL IIG S ++ P+ Sbjct: 374 IHERRENEHRMLAAKEEAERANVAKSSFLANMSHEIRTPLNGIIGMSGILSESNLDPIQR 433 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 +Y N ID S +L ++ND+LDISKIESG + + +L E + I++V A Sbjct: 434 ----DYLNTIDTSSQTLLILINDILDISKIESGNLLISLHSSNLREIAYDTIAIVMSKAK 489 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEE 736 EK + ++ F+ +P +L D ++QI +N++SNA+ FT G +I ++ Sbjct: 490 EKDLQLQIRFSPQMPHMLIIDDHRLRQILMNLMSNAVKFTNKGHVRMEINVTEIDEQRCS 549 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + DTG+G+ + + KPF Q +S + GTGLGL ++ +V+ G I S Sbjct: 550 IYFAIVDTGIGIDKDKQDSIFKPFTQEDSSVTRQYGGTGLGLAISSQLVELMGGNIEIDS 609 Query: 797 TPAKGT 802 KG+ Sbjct: 610 EKGKGS 615 >gi|117923957|ref|YP_864574.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607713|gb|ABK43168.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1064 Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 79/258 (30%), Positives = 145/258 (56%), Gaps = 12/258 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E KQ + +L A++ A+ + KS+FLA +SHEIRTPL AI+G +++ P+ Sbjct: 535 DMTERKQYEQRLESARQQADAGNRAKSEFLAVMSHEIRTPLNAIMGMGDLLGETALSPVQ 594 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 Y + +G +++++ D+LD+S+IE G++ L P ++ V E +V A Sbjct: 595 R----HYLSISQHAGETLVELIEDILDLSRIEVGELELEPAPFEVEALVEEVCEVVTSSA 650 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSN 734 ++K +++ +P +L D + ++QI N+L NA+ FT G++++ H ++ Sbjct: 651 HDKGLILLMRIDPLLPPVLIGDKKRLRQILFNLLFNAVKFTKH-GEVMLDIRHDAARSAA 709 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V+L+VRDTGVGM +E+ +PF Q ++ + G+GLGL + K +V G + Sbjct: 710 GAVLLQVRDTGVGMAEEMIERVFEPFTQGDSTITRQYGGSGLGLTICKRLVSKMGGDIQL 769 Query: 795 FSTPAKGT--LIEIIFPL 810 S +GT ++++ P+ Sbjct: 770 ESALGRGTTATVQLVLPV 787 >gi|71909646|ref|YP_287233.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal [Dechloromonas aromatica RCB] gi|71849267|gb|AAZ48763.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 659 Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 133/243 (54%), Gaps = 10/243 (4%) Query: 566 QEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 QE+ + LS AK+ AE S KS FL+ +SHE+RTP+ AIIG + ++K Q PL + Sbjct: 252 QERTQALSVAKEAAEAASRAKSTFLSNMSHELRTPMNAIIGMTYMLKRQNADPL----QV 307 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + ID + N +L ++ND+LD+SKI++ +M L S+ E ++ SL+ A R+ Sbjct: 308 DKLGKIDNAANHLLQLLNDVLDLSKIDAERMTLEQTAFSIPELAADVASLLTPRAESARL 367 Query: 685 LIRTSFANNIP--RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---L 739 + + R+L D ++Q+ LN+ NAI FT G I++ +E+ + L Sbjct: 368 RFILDVDSRLKGLRLLGDPLRLQQVLLNLAGNAIKFTERGEVRIVARVVEDDEKAVHIEL 427 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 VRDTG+G+ + + PF Q S + GTGLGLP+ + +V G+ + STP Sbjct: 428 SVRDTGIGIAPEAIGRIFNPFEQADGSTTRKYGGTGLGLPICQRLVRLMGGEIQVVSTPG 487 Query: 800 KGT 802 G+ Sbjct: 488 AGS 490 >gi|302339340|ref|YP_003804546.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301636525|gb|ADK81952.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 753 Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 108/383 (28%), Positives = 190/383 (49%), Gaps = 33/383 (8%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E ++++L +E +++ I I + EG + NRA + GY ++ + QN Sbjct: 244 EQQILKLTQAVEQSANVIVITDLEGNMEFVNRAFERSTGYGRQEAI--------GQNPRI 295 Query: 508 VMNHYLTEILSLDLRQTLEKITL-----------GSTKEEKLLSLRIIIKKLPFSSCYSL 556 + YL+E + +L +T+ + GST EK L + I + Sbjct: 296 LKTDYLSEEVYKNLWETISSGNVWEGKFHNKRKDGSTYWEKAL-ISPIKNDAGTIINFVA 354 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 DI++ + +L AK++AE+ S KS+FLA +SHEIRTPL I+GF++++ ++ Sbjct: 355 VKEDITKELAYQQELEQAKEVAEEASRLKSEFLANMSHEIRTPLNVILGFTDLLLDET-- 412 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAIS 673 + + ++ + I SG +L+++ND+LD SKIE+ K++L F+P +L + + Sbjct: 413 --EDAKKRDHLHLIKDSGKNLLELINDILDFSKIEANKLDLEIDVFDPKALLQNIK---G 467 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + L A K + +P +L D ++QI +N+LSNA+ FT G + H Sbjct: 468 MFSLEAKRKGLDFTVEHDVPLPELLGDQYRIRQILMNLLSNAMKFTEVGS--VSLRAHYE 525 Query: 734 NEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 N ++ V DTG+G+ ++ PF Q+ S + + GTGLGL + + +V G Sbjct: 526 NTGIMRFSVSDTGIGIPEESRKQIFHPFEQLDGSAKRKFSGTGLGLSITRRLVHLMGGNI 585 Query: 793 YIFSTPAKGTLIEIIFPLYDTSH 815 + S +G+ I PL T+ Sbjct: 586 TLESKAGRGSTFTIELPLPTTTR 608 >gi|124009209|ref|ZP_01693890.1| sensory box histidine kinase/response regulator [Microscilla marina ATCC 23134] gi|123985194|gb|EAY25128.1| sensory box histidine kinase/response regulator [Microscilla marina ATCC 23134] Length = 1055 Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 89/262 (33%), Positives = 144/262 (54%), Gaps = 9/262 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ K KL AKK A+ + KS+FLA +SHEIRTPL +IGF+++++ + Sbjct: 406 TNWDITHEKLASEKLKEAKKQADTANKAKSEFLANMSHEIRTPLNGVIGFADLLQRSKL- 464 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 N +Y + I +S +LDI+ ++LD SKIE+GK++L L + I+L++ Sbjct: 465 ---NETQQKYISTIYQSATSLLDIITNILDFSKIEAGKLDLMVAKTDLLNLSQQIINLIR 521 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 A++K + + N+IPR + D ++Q+ +N+LSNA FT G ++ I + Sbjct: 522 YQAHKKDLEVLLHIDNDIPRFVWIDEVKMRQVLVNLLSNATKFTTEGEIELKIDLQERLD 581 Query: 735 EE-VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 EE V+LR VRDTG+G+ K + F Q +S R GTGLGL ++ ++D + Sbjct: 582 EEMVVLRFAVRDTGIGIAPENKGKIFEAFSQEDSSTTRRFGGTGLGLSISNKLLDLMGSR 641 Query: 792 FYIFSTPAKGTLIEIIFPLYDT 813 + S +G++ P+ T Sbjct: 642 LLVESITGRGSVFYFDIPVKAT 663 >gi|323138125|ref|ZP_08073198.1| multi-sensor signal transduction histidine kinase [Methylocystis sp. ATCC 49242] gi|322396587|gb|EFX99115.1| multi-sensor signal transduction histidine kinase [Methylocystis sp. ATCC 49242] Length = 842 Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 100/361 (27%), Positives = 173/361 (47%), Gaps = 20/361 (5%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQ--------NTPSV 508 LE +G+A+ +G + N A ++L+ VE + +KP F + Q T + Sbjct: 475 LETLREGVAVFGADGRLNFCNPAFAQLWRLDVEQLDKKPRFDAIVAQCRKLHDNAETWAE 534 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568 + ++T L + E T + + ++ L + L LT D++ + Sbjct: 535 LQCFVT-----GLAEMREGFTRRIERSDGVV-LDCTAQSL-LDGAALLTFVDVTADVNVE 587 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 L+ K ++DF+ VS+E+R+PL I GF ++ + GPL NPR +EY Sbjct: 588 RALTDRNKALLAAEKLRNDFIHHVSYELRSPLNNINGFVHLLGEESTGPL-NPRQLEYLG 646 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 Y+ +S +L I++D+LD++ I+ + L F V + + AI VQ E I ++ Sbjct: 647 YVSKSSAALLAIIDDILDLATIDQDALELEFSDVDAEATMRAAIEGVQDRLAENSIDVQI 706 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 +++ D + V+QI N+LSNAI F+ GQ + +EV+ +V D G G+ Sbjct: 707 VAMDDVGTFRGDAKRVRQILFNLLSNAIGFSRP-GQTVTLAAMRRGDEVVFKVTDRGRGI 765 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 LE+ F ++ R G GLGL + +A ++ + GK +I S P +GT + +F Sbjct: 766 PPEVLERVFDRFES--HTAGSRHRGVGLGLSIVRAFMELHGGKVFIDSAPGEGTTVTCVF 823 Query: 809 P 809 P Sbjct: 824 P 824 >gi|262173448|ref|ZP_06041125.1| hypothetical protein VII_000538 [Vibrio mimicus MB-451] gi|261890806|gb|EEY36793.1| hypothetical protein VII_000538 [Vibrio mimicus MB-451] Length = 1586 Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 113/415 (27%), Positives = 196/415 (47%), Gaps = 18/415 (4%) Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 ++ M F+ + Q+ + + E+ + ++ +K E EV++ ++LE++ + I++ Sbjct: 669 AIMMVFVLMSVSIQYWLWLTSMVKQREEWNLQLQNQK-EKEVLRFKALLESSPEATLIVD 727 Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 GII N K+FGY +++ P + S + +LR ++I Sbjct: 728 PNGIIKMVNEEAEKVFGYGRDELEGYPMHRLFPHDLESARAKHAQWN---ELRPGNQRIE 784 Query: 530 LGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + +E + I + S+++ +I++ + L A AE+ + KS Sbjct: 785 IAVRSDETEFPVEISSSSVQMDDGLLISVSIRNITDRLAFEQTLKQALHDAEQATQAKSV 844 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA SHEIRTPL AI+G + ++ ++ R + + I SG +L IVND+LD+ Sbjct: 845 FLANTSHEIRTPLNAILGLTHLLSDESLTE-SQHRLV---DKIGISGKSLLGIVNDVLDL 900 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706 SKIE+ +M L P+ L E + E S+ A K + + ++P ++AD ++Q Sbjct: 901 SKIEANEMILEALPLDLREFLEEVASVFSTQAEAKNLDFKLEMGVDLPHWVIADSMRLRQ 960 Query: 707 IALNILSNAIHFTPSG-----GQIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKP 759 I N+LSNA+ FT G +II E+ I+R + DTG+G++ ++ KP Sbjct: 961 ILTNLLSNALKFTSVGHIALRAEIIDKFIWKGAEKNIVRFSITDTGIGISEEAQKRLFKP 1020 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 F Q S R GTGLGL + + GK + S +G+ PL S Sbjct: 1021 FSQADTSTSRRFGGTGLGLSIVHKLSGLMEGKIGVESREGQGSTFWTEMPLQTLS 1075 >gi|261251965|ref|ZP_05944539.1| putative histidine kinase [Vibrio orientalis CIP 102891] gi|260938838|gb|EEX94826.1| putative histidine kinase [Vibrio orientalis CIP 102891] Length = 886 Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 85/251 (33%), Positives = 138/251 (54%), Gaps = 15/251 (5%) Query: 563 EWKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 E +Q + +L+ AK+ AEK KS FLA +SHEIRTPL +IG +EV+ + Sbjct: 362 ERQQAQERLTQAKEDAEKAKDAAVMACKAKSSFLANMSHEIRTPLNGVIGITEVLSDTDL 421 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 NP +Y I+ S L+L ++ND+LD SKIESG + + + E++ + S+V Sbjct: 422 ----NPSQKDYVETIETSSQLLLSLINDVLDFSKIESGMLLVSPHSTCVRESIYDIASIV 477 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTS 733 A EK I + S ++ P R++ D ++Q+ +N +SNA+ FT SG + +S+ H Sbjct: 478 APQAKEKGIDLHVSISSETPYRVIVDDHRLRQVLMNFMSNAVKFTNSGVVSLQLSSKHVG 537 Query: 734 NE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 E+ V+DTGVG+ + +K +PF Q +S + GTGLGL ++ +V+ + Sbjct: 538 ENIIEMTFAVQDTGVGIDEQQQKKIFEPFSQEDDSTTRKFGGTGLGLAISTQLVELMGSQ 597 Query: 792 FYIFSTPAKGT 802 + S +G+ Sbjct: 598 IELTSIKGEGS 608 >gi|298530374|ref|ZP_07017776.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509748|gb|EFI33652.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 862 Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 87/269 (32%), Positives = 143/269 (53%), Gaps = 10/269 (3%) Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 LS+ I Y T D++ K + KL AK+ AE+ S+ + +FLAR+SHEIRT Sbjct: 156 LSITSIYNAEGMREGYLFTAMDLTLRKSLEQKLVAAKEEAEQASACRGEFLARMSHEIRT 215 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 P+ AI G + ++ + N +Y I S + +L I+ND+LD SKI++G+M L Sbjct: 216 PMNAITGMAYLLGSTEL----NHVQQDYVRKIIDSADTLLAIINDILDFSKIDAGRMELE 271 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIH 717 P SL + + +++V A EK + I+T +P ++ D + QI LN+ SNA+ Sbjct: 272 ELPFSLQQIIGRMLNVVGARAEEKGLKIQTHIHPGVPDSLVGDALRLGQIILNLCSNAVK 331 Query: 718 FTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 FT S G++ ++ T + ++ V DTG G+T + E+ + F Q S + G Sbjct: 332 FT-SQGEVALTVTLQKERQHQVDLLFCVSDTGTGITPEKAEQLFQAFQQADGSITRKYGG 390 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +GLGL + K + G+ ++ S P +G+ Sbjct: 391 SGLGLAICKELTQMMGGEIWVESIPDQGS 419 >gi|149177515|ref|ZP_01856118.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797] gi|148843665|gb|EDL58025.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797] Length = 1129 Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 107/396 (27%), Positives = 189/396 (47%), Gaps = 36/396 (9%) Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 I + + + E +L +I++++ D I +G I S N ++G+ E+++ + ++ L Sbjct: 310 IERVQWQEERTRLAAIVDSSGDAIIGKAPDGTITSWNNGAEVIYGWLEEEVIGETVSILL 369 Query: 502 EQNTPSVMNHYLTEILS-------LDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSS 552 P M +EIL LD QT G+ + + +R + +++ SS Sbjct: 370 ----PPGMAREESEILEAMKTGRRLDQFQTRRMRKDGTIIDVAITVSPIRGMDQQVVGSS 425 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 DI+ ++ + +LS AK AE+ + + +FLA VSHE+RTP+ AI+G E+ Sbjct: 426 SIE---RDITARRRREEELSKAKDEAEQATRAQGEFLANVSHELRTPMNAILGMLELTLQ 482 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + PL +Y S + +L +VND+LD S++E+G L P SL + EA+ Sbjct: 483 ENLTPLKR----DYLQTAKDSADSLLLLVNDILDFSRLEAGHFELEPVPFSLRVMIDEAV 538 Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG--------- 722 + L A EK + + +P ++L D ++QI N+ NAI FT G Sbjct: 539 KTLSLRACEKGLELICRIDKRVPSQVLGDPVRLRQILTNLAGNAIKFTEQGEVVVDVKLI 598 Query: 723 ---GQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 G+I + + ++ V DTG+G+ + ++ PF Q S GTGLGL Sbjct: 599 EPAGEIPLPRLQPGEKALLEFSVSDTGIGIAVEDQKRIFAPFAQADASTTRHYSGTGLGL 658 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYD 812 + ++ G+ Y+ S P +G+ ++I P+ + Sbjct: 659 AICHELIGLMDGEMYLTSEPGEGSCFSFQVILPVAE 694 >gi|169334535|ref|ZP_02861728.1| hypothetical protein ANASTE_00938 [Anaerofustis stercorihominis DSM 17244] gi|169259252|gb|EDS73218.1| hypothetical protein ANASTE_00938 [Anaerofustis stercorihominis DSM 17244] Length = 872 Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 92/252 (36%), Positives = 126/252 (50%), Gaps = 8/252 (3%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L +A + AEK + KSDFL+R+SHEIRTPL IIG + R + I+ N I Sbjct: 350 LKNALEKAEKANEAKSDFLSRMSHEIRTPLNGIIGMVTL---ARENINNKSKEIDCVNKI 406 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 S +L ++ND+LD+SKIESGK+ + + V +SL A EK I ++ Sbjct: 407 SASSKHLLVLINDILDMSKIESGKVEIKNKKFGFRNFVESTVSLFFSQAKEKGIKFKSVL 466 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII--ISTTHTSNEEVILR--VRDTG 745 NIP + D QI +N+LSNA+ FT GG+I IS + +V +R V DTG Sbjct: 467 IGNIPSYVKGDYLHTNQIIVNLLSNAVKFTDKGGEITNRISLLKEEDNKVWIRFEVSDTG 526 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 VG+ +K PF Q S GTGLGLP+AK G + S KG+ Sbjct: 527 VGIEKKNFDKIFNPFEQEDASVSYNYGGTGLGLPIAKRFTQMLGGNISLKSEVGKGSTFT 586 Query: 806 IIFPLYDTSHPH 817 + P P+ Sbjct: 587 VDLPFTRIPEPN 598 >gi|2801651|gb|AAB97416.1| putative sensor protein [Bradyrhizobium japonicum] Length = 873 Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 83/261 (31%), Positives = 135/261 (51%), Gaps = 5/261 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT DI++ + + L + E K DF+ VS+E+R+PLT IIGF+ + + Sbjct: 612 LTFQDITDTENVERALRERNEALEAADQMKVDFVHHVSYELRSPLTTIIGFAHFLSDPST 671 Query: 616 GPLGNPRYIEYANYIDRSGN-LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 GPL P+ EY +Y+ +S N L L + N++LD++ I++G M L PV + + + A Sbjct: 672 GPL-TPKQAEYLDYVTKSTNALALALTNNILDLATIDAGAMKLELGPVDVSKTIELAAEG 730 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 +Q RI ++ A +I + D + V Q+ N+L+NA+ F+P + IS T + Sbjct: 731 IQDRLATDRIRLKVEIAPDIGSFIGDEKRVVQVLYNLLANAVGFSPQDSTVGISARRTEH 790 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V+ V D+G G+ +K F SQ R G GLGL L ++ V+ + GK + Sbjct: 791 -SVVFTVTDSGPGIPADMKDKVFNWFES--RSQGSRHRGAGLGLSLVRSFVELHGGKVRV 847 Query: 795 FSTPAKGTLIEIIFPLYDTSH 815 S +GT++ FP +H Sbjct: 848 DSIVGRGTVVICDFPTDQAAH 868 >gi|28898529|ref|NP_798134.1| putative histidine kinase [Vibrio parahaemolyticus RIMD 2210633] gi|260879574|ref|ZP_05891929.1| signal transduction histidine kinase [Vibrio parahaemolyticus AN-5034] gi|260894951|ref|ZP_05903447.1| signal transduction histidine kinase [Vibrio parahaemolyticus Peru-466] gi|260901039|ref|ZP_05909434.1| response regulator receiver domain protein [Vibrio parahaemolyticus AQ4037] gi|28806747|dbj|BAC60018.1| putative histidine kinase [Vibrio parahaemolyticus RIMD 2210633] gi|308086084|gb|EFO35779.1| signal transduction histidine kinase [Vibrio parahaemolyticus Peru-466] gi|308093366|gb|EFO43061.1| signal transduction histidine kinase [Vibrio parahaemolyticus AN-5034] gi|308110723|gb|EFO48263.1| response regulator receiver domain protein [Vibrio parahaemolyticus AQ4037] Length = 1051 Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 90/251 (35%), Positives = 140/251 (55%), Gaps = 15/251 (5%) Query: 563 EWKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 E +Q K KL+ AK+ AE+ S KS FLA +SHEIRTPL +IG SEV+ + Sbjct: 366 EREQAKQKLTKAKEDAERAKDDAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLAD--- 422 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 PL + +Y + I+ S L+L ++ND+LD SKIESG + + + E++ + S+V Sbjct: 423 TPLTATQR-DYVDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIV 481 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A EK I + S + N P I+ D ++Q+ +N +SNA+ FT G + TT SN Sbjct: 482 SPKAKEKGIELTVSISPNTPYHIVIDDHRLRQVIMNFMSNAVKFTERGSVELSITTLESN 541 Query: 735 E-EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 E E I+ V+D+G+G+ + ++ PF Q +S + GTGLGL ++ +V+ G Sbjct: 542 ESEAIIEFSVQDSGIGIDEQQQKRIFAPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGS 601 Query: 792 FYIFSTPAKGT 802 + S +G+ Sbjct: 602 IQLESEKGRGS 612 >gi|67924436|ref|ZP_00517862.1| PAS [Crocosphaera watsonii WH 8501] gi|67853725|gb|EAM49058.1| PAS [Crocosphaera watsonii WH 8501] Length = 1044 Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 84/267 (31%), Positives = 144/267 (53%), Gaps = 13/267 (4%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI+ K + L AK+ AE + KS+FLA +SHEIRTP+ AI+GF +++K++ Sbjct: 687 TITDITNKKAAQEALEKAKEAAEVANKAKSEFLATMSHEIRTPMNAILGFCDLLKSK--- 743 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + + Y + IDR G ++L +++D+LDISKIE+GK+++ +EP+ L E + E + Sbjct: 744 -ITDEKSQNYLDSIDRIGKVLLSLIDDILDISKIEAGKLDITYEPIKLREIIIEIQRMFL 802 Query: 677 LYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A EK++ I + +P ++ D ++QI N++ NAI FT G I IS + Sbjct: 803 EKAKEKQLQILVNIEVEVPDVIVFDEIRLRQILFNLVGNAIKFTEE-GLITISVKRDLLQ 861 Query: 736 -------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + + ++DTG+G+ + ++ F Q + GTGLGL + + + Sbjct: 862 WKDDQYCSLEIAIKDTGIGIAPEQQKRVFDVFTQSEGQSNRKYGGTGLGLSITERLTKIL 921 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSH 815 G + S KG+ ++FP D Sbjct: 922 GGTIQLESELGKGSTFTLLFPRVDMGQ 948 >gi|296388021|ref|ZP_06877496.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa PAb1] Length = 918 Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 82/257 (31%), Positives = 141/257 (54%), Gaps = 14/257 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL-- 618 I+ K+E + A + A E+ KS FLA++SHEIRTPL ++G +++++ PL Sbjct: 384 INALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDT---PLDR 440 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 G Y+E I SG+ ++ ++ND+LD ++IESGK++L L+E +S+ ++L Sbjct: 441 GQAAYVET---IASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQ 497 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TS 733 A EKR+ + +PR L D ++Q+ +N+LSNA+ FT G + + + Sbjct: 498 AVEKRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAE-GHVAVRVQRRFDESG 556 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E ++ V D+G+G++ + + F Q +S R G+GLGL +++ +V G+ Sbjct: 557 RERLLYSVSDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIE 616 Query: 794 IFSTPAKGTLIEIIFPL 810 + S P KGT + PL Sbjct: 617 VSSEPGKGTRFSVDLPL 633 >gi|255534918|ref|YP_003095289.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10] gi|255341114|gb|ACU07227.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10] Length = 915 Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 83/248 (33%), Positives = 138/248 (55%), Gaps = 9/248 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K+ ++++ AK++AEK KS+F+A +SHEIRTPL IIGF+E++ Sbjct: 378 DITERKKMEDEIVAAKELAEKAYVLKSEFVANMSHEIRTPLNGIIGFTELLLETNLDDTQ 437 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +Y + I++SG + I+ND+LD SK+E K+ L+ + V ++E VSEA ++V Sbjct: 438 R----QYLDIINQSGVSLYSIINDILDFSKLEKHKLKLNLDKVEIEELVSEAFNIVAYSN 493 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI----IISTTHTSN 734 +KR+ + +NIPR + D +KQ+ +N+LSNA+ FT G + +++ Sbjct: 494 TKKRLEMLIDIDDNIPRYVWTDEMRLKQVFVNLLSNALKFTEEGEIVLYVKVLADLSEGK 553 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 ++ VRDTGVG+ + F Q S + GTGLGL ++ +++ + Sbjct: 554 KKFRFGVRDTGVGINKEKQAVIFSAFSQEDGSITKKYGGTGLGLTISNQILELAGSVLQL 613 Query: 795 FSTPAKGT 802 S KG+ Sbjct: 614 ESEQGKGS 621 >gi|71906576|ref|YP_284163.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB] gi|71846197|gb|AAZ45693.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB] Length = 852 Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 136/249 (54%), Gaps = 8/249 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DIS+ K ++ L AK++AE + + FLA +SHEIRTP+ IIG +E+ + + Sbjct: 172 RDISDVKAAESALISAKEVAESANKARGAFLANMSHEIRTPMNGIIGMTELALDTQL--- 228 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + Y + S +L IVND+LD SKIE+GKM S+ + V EA+ ++ + Sbjct: 229 -DAEQRHYLKTVKSSAEALLTIVNDILDFSKIEAGKMEFESLVFSMQDTVLEAVRVLAVS 287 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEE 736 A++K + + +P RI+ D ++Q+ +N++ NAI FT G + + ++ Sbjct: 288 AHKKGLELVADVRPEVPARIVGDPTRLRQVIINLIGNAIKFTERGEVALKVEVDQSTERS 347 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V LR +RDTG+G+ + + + F Q S R GTGLGL ++ +V GK ++ Sbjct: 348 VYLRFSIRDTGIGVPADKQQAIFEAFSQADVSTTRRFGGTGLGLAISARLVQLMDGKIWL 407 Query: 795 FSTPAKGTL 803 STP +G++ Sbjct: 408 ESTPGQGSV 416 >gi|225390054|ref|ZP_03759778.1| hypothetical protein CLOSTASPAR_03804 [Clostridium asparagiforme DSM 15981] gi|225043882|gb|EEG54128.1| hypothetical protein CLOSTASPAR_03804 [Clostridium asparagiforme DSM 15981] Length = 1138 Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 85/257 (33%), Positives = 135/257 (52%), Gaps = 9/257 (3%) Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 S +LT+ DI+E Q + +L A E+ + KS FLA +SH+IRTPL A+IG + + Sbjct: 476 SFITLTLEDITESVQSRRRLEEALLNEERAGAAKSTFLASMSHDIRTPLNAVIGLTNLAL 535 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 P + + +E I S L+L ++ND+LD+SKIESGKM L L E ++ Sbjct: 536 CT---PNDSKKVMECLQKIANSSQLLLGLINDVLDMSKIESGKMQLAETEFELGEWLAGV 592 Query: 672 ISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 ++++Q + + + N +L D + Q+ N+L NA+ FTP GG+I + + Sbjct: 593 VTVIQSQTSVRGQHFDVNAWNITHELLCGDTVRLSQVLTNVLGNAVKFTPKGGEIYLEIS 652 Query: 731 HT-----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 ++ + R+ DTGVGM+ L + F + N+ +GTGLG+ + K +V Sbjct: 653 EIPSPDPASARFVFRISDTGVGMSREYLSHIFEMFTREQNAYSQGVQGTGLGMAITKRIV 712 Query: 786 DANMGKFYIFSTPAKGT 802 D G + S P KGT Sbjct: 713 DLMGGSIRVESEPGKGT 729 >gi|117926684|ref|YP_867301.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610440|gb|ABK45895.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 2654 Score = 134 bits (337), Expect = 7e-29, Method: Composition-based stats. Identities = 87/253 (34%), Positives = 135/253 (53%), Gaps = 9/253 (3%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y +TM DI+ K + + AK+IA+ + KSDFLA +SHEIRTP+ AIIG S + Sbjct: 1811 YGITM-DITASKLAADAIQQAKEIADAANQAKSDFLANMSHEIRTPMNAIIGMSHLALQT 1869 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 N R Y + RS +L I+ND+LD SKIE+GK+ + F L++ + + Sbjct: 1870 DL----NGRQRNYITKVKRSAEALLGIINDILDFSKIEAGKLTMEFIDFRLEDVLDNLSN 1925 Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-ISTTH 731 LV L A EK + + S + L D + Q+ +N+ +NA+ FT G ++ + Sbjct: 1926 LVGLKAEEKGLELHFSLPPGLHTALKGDPLRLGQVLINLGNNAVKFTAHGDVVVKVQQLE 1985 Query: 732 TSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + E + L V+D+G+GMT + K F Q S + GTGLGL ++K +V+ Sbjct: 1986 RTTERIKLYFSVKDSGIGMTPEQKGLLFKSFSQADASTTRKFGGTGLGLAISKRLVEMME 2045 Query: 790 GKFYIFSTPAKGT 802 G+ + S P +G+ Sbjct: 2046 GEIDVDSVPEQGS 2058 >gi|332142546|ref|YP_004428284.1| aerobic respiration control sensor protein ArcB [Alteromonas macleodii str. 'Deep ecotype'] gi|327552568|gb|AEA99286.1| aerobic respiration control sensor protein ArcB [Alteromonas macleodii str. 'Deep ecotype'] Length = 784 Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 109/384 (28%), Positives = 188/384 (48%), Gaps = 47/384 (12%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVM--N 510 L SI++A+ D I N EG NR + G +++L P V+ E+ ++ + Sbjct: 160 LRSIIDASPDLIYYRNEEGRFAGCNRIAELMTGKTEQELLGLTPKDVYEEELARQIVASD 219 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--------IKKLPFSSCYSLTM---- 558 H + E T S EE L LR +K++PF + Sbjct: 220 HEVLE-------------TNASITEE--LWLRFADGRRRYFEMKRVPFFDKEGNRLGLLS 264 Query: 559 --HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 D++E KQ +N A K S+ K+ F+A +SHE+RTPL I+G S ++++ Sbjct: 265 FGRDMTERKQAENA-------AAKASTDKTRFIATISHELRTPLNGIVGLSRMLRDTEL- 316 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + + I S + +I ND++D+ K++ K+ L + +SL + E S+++ Sbjct: 317 ---SDEQFSWVSTIYASAITLGNIFNDIIDLDKLDRDKLELSLKTISLKDFTEELSSIIR 373 Query: 677 LYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 L A +K++ ++TS +PR++ D ++QI NIL NA+ FT G + +S+T Sbjct: 374 LLAADKQLELKTSINEPLPRLVEIDGTRLRQILWNILFNAVKFTQKGHVSLSVSSTKPDG 433 Query: 735 EE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++ V + DTGVG+ E++K + Q+ + GTG+GL + K MVD G+ Sbjct: 434 DKAYVTFVIEDTGVGIPESEIDKIFAMYYQVDHPDHQSATGTGIGLAICKQMVDLMNGEI 493 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHP 816 ++ S KGT EI+ P+ ++ P Sbjct: 494 HVSSKEGKGTRFEIVLPVQISNSP 517 >gi|119773885|ref|YP_926625.1| signal transduction histidine kinase-like protein [Shewanella amazonensis SB2B] gi|119766385|gb|ABL98955.1| signal transduction histidine kinase-like protein [Shewanella amazonensis SB2B] Length = 1287 Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 107/391 (27%), Positives = 192/391 (49%), Gaps = 32/391 (8%) Query: 442 INKRKMEIEVMQLC--SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI--LRKPF 497 +++R ++E M + +IL+A S I + EGII N + +L G+ +++ L+ P Sbjct: 374 VHERTSQLEKMGVLQRTILDAASYAIIATDTEGIITVFNPSAERLLGFTAKEMVGLQTPA 433 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL---------SLRIIIKKL 548 LE+ L+E L + + S + ++ RI +K L Sbjct: 434 IFHLEEEVVRRATQ-LSEELGTKIEPGFDAFVAKSRRGKEDTNNWTYVSKSGARITVK-L 491 Query: 549 PFSSCYSL---------TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 ++ Y +D++E + + +L+ A++ A + S KSDFLA +SHEIRTP Sbjct: 492 SVTTLYGEDKDIMGYLGIAYDLTEQLKREQELADAREQALQASRAKSDFLANMSHEIRTP 551 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 + A++G ++ P PR +Y ++ +L ++ND+LD SKIE+G++ L Sbjct: 552 MNAVLGLLQMTLQTELPP--RPR--DYLEKTQQAAKSLLALLNDILDFSKIEAGRIELER 607 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHF 718 + SL + + + S++ +K I + A ++P +++ D ++QI LN+L+NAI F Sbjct: 608 QGFSLQQLLGDMGSILSSQVQQKDIELVYQVAPSVPDQLIGDSLRLRQILLNVLTNAIKF 667 Query: 719 TPSGGQIIISTTHTSNEEVI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 T G I ++ + ++D+G+GMTN + K F Q +S R GTG Sbjct: 668 TEKGDIITRIDADLGDDGTCHLHIEIQDSGIGMTNEQQAIIFKGFSQADSSISRRYGGTG 727 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 LGL + + +V G+ + S+P G+ I Sbjct: 728 LGLAITRELVHLMQGEIRVTSSPGVGSTFTI 758 >gi|294140286|ref|YP_003556264.1| sensory box histidine kinase/response regulator [Shewanella violacea DSS12] gi|293326755|dbj|BAJ01486.1| sensory box histidine kinase/response regulator [Shewanella violacea DSS12] Length = 1214 Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 102/361 (28%), Positives = 183/361 (50%), Gaps = 19/361 (5%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE----DILRKPFTVFLEQNT-PSV 508 L + LEA+ D + I+ G I N A S LFG+ E +IL V +E+ Sbjct: 394 LLATLEASQDALITIDITGRIQEFNEAASHLFGHSREQALGEILEDLIFVDIEKKAFKEG 453 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568 + + +++++E +++ + + +++I +L + +HD+SE Q + Sbjct: 454 LETFRKTGCGPAIKKSVELMSIRADGTNFPVEMKMIPVQLGDEILLTAFLHDVSERMQYE 513 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L AKK AE S KS FLA +SHEIR+PL A++G E++ + + N YA+ Sbjct: 514 TELKQAKKQAELGSKAKSRFLATMSHEIRSPLNAVLGGVELMLDSKL----NKDQRIYAH 569 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKM---NLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 +G +L +ND+LD SKIE+G+M N+ F P + V++ + ++ ANEK + Sbjct: 570 TAKEAGTALLSTINDILDFSKIEAGQMVLENMSFSPAKM---VAQVMQILAPKANEKGVN 626 Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRV 741 + T N+P ++ D + ++Q+ N++ NAI F+ G ++ I +H ++ V Sbjct: 627 LATFINRNVPELVKGDAQRLRQVLHNLVDNAIKFSSGGCVSVEMWIPDSHHQEVQLHCAV 686 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D G+G++ +K K F Q+ + +GTGLGL + ++ G+ + S G Sbjct: 687 TDEGIGISLPAQKKLFKEFSQVHDQHNTNYKGTGLGLAICSELIIMMGGEIELSSRLGHG 746 Query: 802 T 802 + Sbjct: 747 S 747 Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 38/60 (63%) Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 +N ++E ++L +ILEA DG II+ +G+I+ N AV +LFGY D++ ++F+ Sbjct: 254 MNTHELESANIRLSTILEAAVDGFIIIDTQGLIVQVNPAVGQLFGYDNNDLIGHNVSIFM 313 >gi|186681986|ref|YP_001865182.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186464438|gb|ACC80239.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 595 Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 93/287 (32%), Positives = 158/287 (55%), Gaps = 33/287 (11%) Query: 553 CYSLTMHDISEWKQEKNKL----SHA---------KKIAEKESSHKSDFLARVSHEIRTP 599 CY+LT ++ K+ ++L +HA ++ AE+ S KS+FLA VSHEIRTP Sbjct: 287 CYTLTESELELAKEAADQLGTAIAHATLYEELEVARQKAEEASRLKSEFLANVSHEIRTP 346 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL---VLDIVNDLLDISKIESGKMN 656 L +IGF ++I G +P E ++ + NL +L+I+ND+LDI+KIE+GKM Sbjct: 347 LNGMIGFLKLILE---GMADDPE--EQNQFLAEAHNLSIHLLNIINDILDIAKIEAGKME 401 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL--ADLRSVKQIALNILSN 714 L + PV L+E S+ S ++ A + + R I+ ++ + + Q+ LN+L N Sbjct: 402 LTYAPVKLNELFSDVESFMRPQAEMRNLSFRMQMPATSDEIIVQSNYQRLLQVMLNLLGN 461 Query: 715 AIHFTPSGG-----QIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPN 765 AI FT GG +++ + +++ V +RV DTG+G++ + +K + F Q+ Sbjct: 462 AIKFTHEGGVTVSADLVLKKSKLQDQQFPGLVRVRVADTGIGVSLDKQDKLFQLFSQVDG 521 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLY 811 S+ + GTGLGL +++ +V+A G+ + +S G+ + PLY Sbjct: 522 SRTRQYGGTGLGLAISQKLVEAMGGEVHFYSLGEGLGSTVTFTVPLY 568 >gi|323700495|ref|ZP_08112407.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323460427|gb|EGB16292.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 1086 Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 9/267 (3%) Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 P ++ DI+E L AK +AE S KS+FLA +SHEIRTPL I+G + Sbjct: 681 PAPGQFACIFSDITERVLTSRALVEAKDLAESASRVKSEFLANMSHEIRTPLNGIMGMLQ 740 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++ R G L + EYA Y ++ + ++ D+LD+S+IE+GK+++ EPV+L + + Sbjct: 741 LL---RAGDLTEEQ-AEYAAYGIKASRRLTRLLTDILDLSRIEAGKLDIREEPVNLRDTL 796 Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727 S + + A K + + +++P R+ D ++Q+ +N++ NAI +T +GG + Sbjct: 797 SGLEQMFAVAARSKGLSLVFDLPDDLPDRLFGDDTRIQQVLVNLIGNAIKYTETGGVTVE 856 Query: 728 STT----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 TT V+ V DTG+G+ + +L + F Q+ + +G GLGL + K Sbjct: 857 VTTLPRLRPDTVHVLFTVTDTGIGIPDDKLGTVFEHFTQVSSGFTRHYQGAGLGLAITKR 916 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL 810 M+ G + S P +GT+ + PL Sbjct: 917 MIGLLGGTLAVDSEPGRGTVFGLCVPL 943 >gi|294634414|ref|ZP_06712950.1| TMAO reductase sytem sensor TorS [Edwardsiella tarda ATCC 23685] gi|291092124|gb|EFE24685.1| TMAO reductase sytem sensor TorS [Edwardsiella tarda ATCC 23685] Length = 932 Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 133/247 (53%), Gaps = 13/247 (5%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK + KS FLA +SHEIRTPL I+G ++++ Q PL +PR +Y I+ Sbjct: 433 QARAAAEKADNAKSAFLAAMSHEIRTPLHGILGTAQLLAGQ---PL-SPRCRDYVQAIND 488 Query: 633 SGNLVLDIVNDLLDISKIESG--KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG +L ++ND+LD S IE+G + L+ EP + + + + L + ++ + + + Sbjct: 489 SGESLLAVLNDVLDYSAIEAGSHSVALNDEPFAPRQLLDSVLRLAEGRLQQRPLRLEHDY 548 Query: 691 ANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 A +P L D R ++QI +N+L+NA+ FT G +I+ + + + V+D+G G+ Sbjct: 549 AAALPAWLQGDPRRIRQIVMNLLNNALRFTERG--VIVLQSGCDQTQWWIAVQDSGCGID 606 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + +PF Q+ R GTGLGL + + + A G + S P +G+ + P Sbjct: 607 PAQQAAIFQPFVQLSA----RRGGTGLGLAICRGLAQAMAGSLTVSSLPGEGSRFCLTLP 662 Query: 810 LYDTSHP 816 L SHP Sbjct: 663 LRQASHP 669 >gi|283850576|ref|ZP_06367864.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283574147|gb|EFC22119.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 642 Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 103/370 (27%), Positives = 183/370 (49%), Gaps = 17/370 (4%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYL 513 +++E D IA +R +L N V G D++ KP F +E + P L Sbjct: 144 ALVEHAPDIIARFDRAHRLLYVNPVVEAATGVAPADLIGKPLASFGVVEADRPKA-EETL 202 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKL 571 + + Q LE +G+ ++ +R + ++ DI++ K +N+ Sbjct: 203 RHVFATGEDQVLEG-RIGNRGGDRTYEIRFAAEMGADGRVETVLAVARDIAKRKALENEA 261 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 A++ AE+ + KS+FLA +SHEIRTP+ I+G + + + +P EY + D Sbjct: 262 RQAREEAEQANRAKSEFLANMSHEIRTPMNGIMGMIHLARLKSV----DPAISEYLDLAD 317 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 +S +L IVND+LD+SK+E+GK+ L + SL + V + ++ A +K + + + A Sbjct: 318 KSALHLLGIVNDVLDLSKLEAGKIRLFRKRFSLRKEVEAVVEPFRVAAGKKDLGLAHTVA 377 Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILR--VRDTG 745 ++P I+ D ++Q+ N++ NA+ FTPSG ++ + + + R V DTG Sbjct: 378 PDLPDSIVGDAGRLRQVLTNLVGNALKFTPSGRIDLRVERAGESAAGGPQLFRFTVTDTG 437 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ + F Q S Q GTGLGL +++ +V+ G+ + ST +G++ Sbjct: 438 IGIPAVRFAHIFESFEQAHTSAQALFGGTGLGLTISRQLVELMGGEITVASTEGEGSVFS 497 Query: 806 IIFPLYDTSH 815 PL D +H Sbjct: 498 FTLPL-DVAH 506 >gi|237746472|ref|ZP_04576952.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes HOxBLS] gi|229377823|gb|EEO27914.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes HOxBLS] Length = 765 Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 85/249 (34%), Positives = 136/249 (54%), Gaps = 9/249 (3%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 +N L A + A+ ++ KS FL +SH+IRTP+ AIIG + + P R + Sbjct: 232 QNALREALESAQNANAAKSQFLFNMSHDIRTPMNAIIGMTTLATLHLHEP---SRIRDCL 288 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I S +L ++ND+LD+SKIESGK+ L+ E L E V+ +++Q A+ +R+ + Sbjct: 289 GKISASSRHLLGLINDVLDMSKIESGKIALNNEEFDLPELVAGLFTILQQQASSRRLDLD 348 Query: 688 TSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EVILRV 741 S + + +++ D V QI LN++ NA+ FTP+GG+I ++ T + V Sbjct: 349 ISVSGIDHEKVIGDTLRVNQILLNLMGNALKFTPAGGRIRLAITELPPQYPGYGTYRFVV 408 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+GM + L+K PF + + + EGTGLG+ + K +VD G+ + S P KG Sbjct: 409 SDTGIGMDSDFLKKIYNPFERAKTATGSKIEGTGLGMAITKNIVDMMNGQIDVQSEPGKG 468 Query: 802 TLIEIIFPL 810 T + PL Sbjct: 469 TTFTVTLPL 477 >gi|332532631|ref|ZP_08408507.1| sensory histidine kinase BarA [Pseudoalteromonas haloplanktis ANT/505] gi|332037847|gb|EGI74296.1| sensory histidine kinase BarA [Pseudoalteromonas haloplanktis ANT/505] Length = 924 Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 139/246 (56%), Gaps = 8/246 (3%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + +++ +LS AKK A+ + KSDFLA++SHE+RTPL +IGF+ Q + N Sbjct: 266 LEQYETSNIELSFAKKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTR----QLYKTPLN 321 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 +Y + I S N ++ I++D+LD SK+E+G M L L +AV+E ++L+ A+ Sbjct: 322 KHQKDYLDTIMLSANSLMTIISDILDFSKLEAGAMELESIQFQLRDAVNEVMTLLAPSAH 381 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE-- 736 +K++ + +P L D KQ+ +N+LSNAI FT G ++ IS +E Sbjct: 382 DKQLELSIYINQQVPDDLTGDPTRFKQVLINLLSNAIKFTEKGSIKVDISHRLLDDERTS 441 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +++ V DTGVG+ + + PFGQ +S + GTGLGL + K +V+A G+ + S Sbjct: 442 LLVSVTDTGVGIPMDKQDSLFTPFGQADSSITRKFGGTGLGLIITKHIVEAMSGRITLNS 501 Query: 797 TPAKGT 802 P GT Sbjct: 502 APGNGT 507 >gi|315185742|gb|EFU19509.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM 6578] Length = 785 Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 98/363 (26%), Positives = 177/363 (48%), Gaps = 15/363 (4%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L +LE G+ +++ EG IL+ N + + E++ F + + V++ ++ Sbjct: 12 LLEVLEHVPVGMILLSPEGDILAANGRFLDMVDWSEEELDGVRFPQIIYSSDEPVVSSFI 71 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKL 571 + + Q + + K+ + R+ FS L + DI++ K + L Sbjct: 72 DRLARGEAHQA-GLLVRAARKDGSIAWWRL----WGFSRGAEVLLGVFDITDQKVTEEHL 126 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 ++ A + KS FLA +SHEIRTPL I+G +E++++ R + +Y I Sbjct: 127 RKEREEAIRSVQSKSRFLANMSHEIRTPLHTILGMTELLEDTRL----DEEQRDYVQQIR 182 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 SG +L ++ND+LD SKIE+GK+ + L E V +A+ +V L A++K + + Sbjct: 183 FSGEALLALINDILDYSKIEAGKLPMEIIDFDLYEVVEQAVGMVSLQAHKKHLEVVVDIG 242 Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTGVG 747 +P R+ D ++QI +N+ +NA+ FT G ++ + V V DTG+G Sbjct: 243 EEVPRRVKGDPLRIRQILVNLANNAVKFTEKGHVFCRVQLVQQRKGVAWVAFTVEDTGIG 302 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + + + F QI S R GTGLGL ++K++V+ G+ + S +G+ + Sbjct: 303 IPENKKHRLFRVFSQIDESTTRRFGGTGLGLAISKSLVEMMKGEIGVRSREGEGSSFWFL 362 Query: 808 FPL 810 PL Sbjct: 363 LPL 365 >gi|308125838|ref|ZP_07663534.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] gi|308111657|gb|EFO49197.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] Length = 778 Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 90/251 (35%), Positives = 140/251 (55%), Gaps = 15/251 (5%) Query: 563 EWKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 E +Q K KL+ AK+ AE+ S KS FLA +SHEIRTPL +IG SEV+ + Sbjct: 366 EREQAKQKLTKAKEDAERAKDDAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLAD--- 422 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 PL + +Y + I+ S L+L ++ND+LD SKIESG + + + E++ + S+V Sbjct: 423 TPLTATQR-DYVDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIV 481 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A EK I + S + N P I+ D ++Q+ +N +SNA+ FT G + TT SN Sbjct: 482 SPKAKEKGIELTVSISPNTPYHIVIDDHRLRQVIMNFMSNAVKFTERGSVELSITTLESN 541 Query: 735 E-EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 E E I+ V+D+G+G+ + ++ PF Q +S + GTGLGL ++ +V+ G Sbjct: 542 ESEAIIEFSVQDSGIGIDEQQQKRIFAPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGS 601 Query: 792 FYIFSTPAKGT 802 + S +G+ Sbjct: 602 IQLESEKGRGS 612 >gi|85860639|ref|YP_462841.1| sensor proteinluxq [Syntrophus aciditrophicus SB] gi|85723730|gb|ABC78673.1| sensor proteinLuxQ [Syntrophus aciditrophicus SB] Length = 955 Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 110/406 (27%), Positives = 188/406 (46%), Gaps = 33/406 (8%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL----- 493 D R+ +R + + I++ D I ++ EG +++ N A+ ++ G P E++L Sbjct: 280 DRRLAERALAESQRRFKDIIDFFPDAILAVDIEGRVVTWNHAMEQMTGIPAEEMLGKGNY 339 Query: 494 ---------RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 R+P + L + H+ I R LG T L I Sbjct: 340 EYALPFYGTRRPILIDLAMRPQEEIEHHYVSIHREGNR------LLGETYIANLHGGNIF 393 Query: 545 IKKLPFSSCYSL---------TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 + ++ Y ++ DIS+ K + L AK+ A+ + KS FLA +SHE Sbjct: 394 LSGTA-TALYDSKGRMIGAIESLRDISDRKATEVALQQAKEAADAANRSKSAFLANMSHE 452 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 +RTPL AIIG+SE+++ + G +I + I +G +L ++ND+LD+SKIE+ K+ Sbjct: 453 LRTPLNAIIGYSELLQEEAE-EAGVNHFISALDRIHSAGKHLLGLINDILDLSKIEASKI 511 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 L+ E S+ E + + + + ++ + ADL ++Q N+LSNA Sbjct: 512 ELYPETFSVSEMIESIVKIADPLVKKNGNILIVKGCETGGEMHADLTRLRQCLFNLLSNA 571 Query: 716 IHFTPSGG-QIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 FT SG + +S T + +E + + DTG+GMT ++E+ + F Q +S + G Sbjct: 572 AKFTTSGVITLTVSRTQEAEQEWMNFSLHDTGIGMTPQQMERLFQTFTQADSSTTRKFGG 631 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 TGLGL + + G + S KG+L I P + P + Sbjct: 632 TGLGLTITRNFCRLMGGDITVESEYGKGSLFTIRIPAVTAAGPAEA 677 >gi|294637606|ref|ZP_06715886.1| sensor protein GacS [Edwardsiella tarda ATCC 23685] gi|291089236|gb|EFE21797.1| sensor protein GacS [Edwardsiella tarda ATCC 23685] Length = 934 Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 85/238 (35%), Positives = 139/238 (58%), Gaps = 10/238 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +V+K PL + I+Y + Sbjct: 272 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQVLKT----PLSATQ-IDYLH 326 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS N +L I+ND+LD SK+E+GK+ L P L E + E +L+ A++K + + Sbjct: 327 TIERSANNLLSIINDVLDFSKLEAGKLVLEHIPFMLRETIDEVATLLAPSAHDKGLELTL 386 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDT 744 + N++P +L D ++Q+ N+L NAI FT G +I + +T E+ ++V DT Sbjct: 387 NVRNDVPEHVLGDPMRLQQVLTNLLGNAIKFTEKGNIDIRIEQRSLNTQAVELEVQVHDT 446 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G++ + + + F Q S R GTGLGL + + +++ G S P KG+ Sbjct: 447 GIGISERQQSQLFQAFRQADASITRRHGGTGLGLVITQKLINEMGGDIAFHSQPHKGS 504 >gi|237745636|ref|ZP_04576116.1| signal transduction histidine kinase [Oxalobacter formigenes HOxBLS] gi|229376987|gb|EEO27078.1| signal transduction histidine kinase [Oxalobacter formigenes HOxBLS] Length = 577 Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 85/252 (33%), Positives = 136/252 (53%), Gaps = 9/252 (3%) Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 + + KLS AE S KS+FL+R+SHEIRTP+ IIG + K R + Sbjct: 176 YSARQKKLSADLLAAENASREKSEFLSRMSHEIRTPMNGIIGMT---KMARMSVDDKNKL 232 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + + ID S +L ++ND+LD+++IESGK+ L+ +P L V + + A + + Sbjct: 233 LNSLDKIDFSSRFLLALINDILDMARIESGKVELYNQPFDLLHLVDGIEIMFRQKAVDNQ 292 Query: 684 ILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQII--ISTTHTSNEEVIL- 739 + R + + ++P ++ D + QI +N++SNA+ FTP+GGQ++ I TS V L Sbjct: 293 VTFRVNTHDLSVPGVVGDELRINQIIINLVSNALKFTPAGGQVMLDIKAHRTSGNAVRLE 352 Query: 740 -RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 R+ DTG+GM+ +++ +PF Q S G GTGLGL + +V G + S P Sbjct: 353 FRISDTGIGMSEEFMQRMFEPFEQASESAMQYG-GTGLGLAICHNLVHMMNGTINVTSKP 411 Query: 799 AKGTLIEIIFPL 810 G+ +I L Sbjct: 412 GNGSQFTVILTL 423 >gi|309790734|ref|ZP_07685283.1| PAS sensor protein [Oscillochloris trichoides DG6] gi|308227225|gb|EFO80904.1| PAS sensor protein [Oscillochloris trichoides DG6] Length = 871 Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 133/234 (56%), Gaps = 10/234 (4%) Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHEIRTPL A+IG S ++ N L + EYA I SG +L ++ D+LD+ Sbjct: 365 FLAMMSHEIRTPLNAVIGMSSLLLNSDLSELQH----EYATTIGTSGKTLLALITDILDL 420 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQ 706 S+IE+G+M L +P SLD +SE +S+V A +++++ +P ++ D+ ++Q Sbjct: 421 SRIEAGQMVLEQQPFSLDTCLSETLSIVAHAATTHGLMLKSQVRPGLPALVYGDVNRLRQ 480 Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDTGVGMTNYELEKAMKPFGQ 762 I +N+LSNAI FT G++++S + ++VRDTG+G++ ++E+ PF Q Sbjct: 481 IVVNLLSNAIKFTRR-GEVVLSAESQPQANGYHHITIQVRDTGIGISAEQIERIFHPFVQ 539 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 +S R GTGLGL +++ + + G + S P +G+ + L P Sbjct: 540 ADSSTTRRYGGTGLGLAISRQLAELMGGTLTVTSVPERGSTFTLRLSLQAVDVP 593 >gi|149191397|ref|ZP_01869648.1| RscS; sensor kinase protein [Vibrio shilonii AK1] gi|148834746|gb|EDL51732.1| RscS; sensor kinase protein [Vibrio shilonii AK1] Length = 836 Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 109/407 (26%), Positives = 193/407 (47%), Gaps = 22/407 (5%) Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 PF+K Q + Q + +NK + E +L ++++ T D + I +++G I Sbjct: 301 PFQKLEQSRTQLAQQA------ELLMNKER---EATRLANVVKHTRDAVLITDKQGRIEW 351 Query: 477 TNRAVSKLFGYPVEDILR-KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 N+A + G+ ++I+ KP T+ + + L + + +E + TK+ Sbjct: 352 VNQAFESMTGFHKDEIIGIKPGTLLQGKGSNEKAIEKLRKAVKEQQPTRVEILNFSRTKQ 411 Query: 536 EKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 + + I + + DI+ K+ + KL +A A+ + K+ FLA +S Sbjct: 412 AYWVDIEISPVFGANGELDKFIAVERDITATKKLQRKLENAVVAADSANIAKTQFLATMS 471 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HEIRTP+ ++G +V+ + + E + I SGN ++ I+ND+LD++K+E Sbjct: 472 HEIRTPMNGVLGMVQVM----LSEAKDKQQKENLSLILESGNHLISILNDILDLTKVEQN 527 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRIL--IRTSFANNIPRILADLRSVKQIALNI 711 K+ L P ++++ ++ S Q EK I I N+ L D V+Q+ N+ Sbjct: 528 KIELESCPFNIEQIIAPLRSTYQAVCQEKGIELNIECHIDANMT-FLGDRNRVRQVMYNL 586 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 L+NAI FT GG ++ T + + ++ V+D+G+G+ LE+ +PF Q S Sbjct: 587 LNNAIKFTERGGVTVVITNNPTTPSLLRFSVQDSGIGIETSALERIFEPFVQADASTTRE 646 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSH 815 GTGLGL + K +V+ G S +GT EI P+ D H Sbjct: 647 YGGTGLGLAIVKQLVEKMGGTIDATSEQGQGTRFEFEIKLPVTDGEH 693 >gi|71735914|ref|YP_273056.1| response regulator/sensor histidine kinase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556467|gb|AAZ35678.1| response regulator/sensor histidine kinase [Pseudomonas syringae pv. phaseolicola 1448A] Length = 762 Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 81/262 (30%), Positives = 150/262 (57%), Gaps = 14/262 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E +++ KLS AK AE+ + KS FLA +SHEIRTP+ I+G E++ ++ Sbjct: 156 DVTEAREKSLKLSQAKDAAEEAAHAKSQFLATMSHEIRTPMNGILGLLELLHSKSM---- 211 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +P + ID S ++ ++ND+LD+SKIE ++ LH +P L +S + ++ A Sbjct: 212 SPDQQQIMLMIDESAKSLMTVLNDVLDLSKIEFNQLELHRQPTDLRALISSVVGIMAHQA 271 Query: 680 NEK----RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHT 732 + K RI I + A+++ + D+R ++Q+ LN+LSNAI FT G ++ ++ + Sbjct: 272 HAKGLRVRITISPALASSVE--VDDMR-LRQVLLNLLSNAIKFTAVGTVSIKVAVTRSSD 328 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + + + + V DTG+GM++ + E+ +PF Q S G+GLGL +++ ++ G+ Sbjct: 329 TTQHLAISVIDTGLGMSDSQRERIFEPFTQGDASITRSYGGSGLGLVISQHLIRLMGGEL 388 Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814 + + GT + ++ P+ +S Sbjct: 389 ALETEEHVGTNVTVVLPVSASS 410 >gi|32476695|ref|NP_869689.1| sensor/response regulator hybrid [Rhodopirellula baltica SH 1] gi|32447241|emb|CAD77067.1| probable sensor/response regulator hybrid [Rhodopirellula baltica SH 1] Length = 1739 Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 80/248 (32%), Positives = 143/248 (57%), Gaps = 12/248 (4%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + L +++ A + S+ KS FLA +SHEIRTP+TAI+G++E++++ + + + + Sbjct: 1345 QAETLRESERRANEASASKSAFLANMSHEIRTPMTAILGYAELLQD----IIQDTEGLHH 1400 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQLYANEKR 683 I R+G+ +LDI+ND+LD+SKIE+GK+++ F+P L E V S++++ A E Sbjct: 1401 LQTIRRNGDYLLDIINDILDLSKIEAGKLDVESERFDPAHLIEDVR---SIMEVRAKEAG 1457 Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + + + IP I +D + +KQ+ +N++ NAI FTP G ++ + + + V Sbjct: 1458 LELTVEYGQQIPASIQSDAKRLKQVLINLVGNAIKFTPEGNVRLVVRMESEPIRLCIDVI 1517 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+T + E+ PF Q +S GTGLGL +++ + + G + S G+ Sbjct: 1518 DTGIGITPEQQEQLFLPFSQGDSSVNRTFGGTGLGLTISRRLAEMLGGTIHFQSEVGVGS 1577 Query: 803 LIEI-IFP 809 + +FP Sbjct: 1578 TFTLSVFP 1585 Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 5/62 (8%) Query: 435 PEDVDTRINKRKMEIEVMQLCSILEA----TSDGIAIINREGIILSTNRAVSKLFGYPVE 490 P VD R +++K E++ ++ LEA DGI I+R G I S N A +K+FGY V+ Sbjct: 1081 PSGVDIR-DRKKAELKQQEVAVRLEAIFNTAVDGIITIDRRGTINSVNVAAAKIFGYGVD 1139 Query: 491 DI 492 ++ Sbjct: 1140 EL 1141 >gi|163846840|ref|YP_001634884.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222524660|ref|YP_002569131.1| integral membrane sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163668129|gb|ABY34495.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222448539|gb|ACM52805.1| integral membrane sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 479 Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 135/228 (59%), Gaps = 5/228 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKN--QRFGPLG-NPRYIEYANYIDRSGNLVLDIV 641 KS+F+A +SHE+RTPL IIGFS + + +G + + + ++ I RSG +L ++ Sbjct: 245 KSNFMATMSHELRTPLNIIIGFSTAMLEHPEMYGDVRIDEQVLQDIAEIRRSGQHLLGLI 304 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 ND+LD++K+E+GK+ L+ ++L + E + Q N++ I +R + +P + AD Sbjct: 305 NDILDLAKVEAGKLELNKTNLALGPLLEETLRTAQALINDRPIQLRREYREPLPTVFADE 364 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 V+Q+ LN++SNA FT G+I + +N E++L VRDTG+G+ + E+ + F Sbjct: 365 VRVRQVLLNLVSNACKFT-HAGEIAVGARVDTN-EIVLWVRDTGIGIAPADQERIFQQFE 422 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 QI N+ + GTGLGL + + +V+ + G+ ++ S KG++ P Sbjct: 423 QIENADTRQHAGTGLGLSICRWLVELHGGRMWVESELGKGSIFFFSLP 470 >gi|254411490|ref|ZP_05025267.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196181991|gb|EDX76978.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1342 Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 82/238 (34%), Positives = 127/238 (53%), Gaps = 8/238 (3%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 N+L A++ A + KS FLA +SHEIRTP+ ++G ++ + R +YA Sbjct: 650 NELVEAREAALEAVRFKSKFLANMSHEIRTPMNGVLGMVGLLLQTQL----TSRQRDYAQ 705 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I RS + +L I+ND+LD SK+E+G+M L LD + + ++ A K + + T Sbjct: 706 TIRRSADHLLTIINDILDFSKLEAGEMELETIEFDLDGCIESVLDVLATQAEAKNLELAT 765 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDT 744 +PR L D ++Q+ LN+ +NAI FTP G +I + T + N + V DT Sbjct: 766 LVDRKVPRQLKGDPARLRQVLLNLANNAIKFTPQGEVVIHVTLETATSKNATLHFAVSDT 825 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GVG++ EK + F Q+ NS + GTGLGL + K +VD G+ + S KG+ Sbjct: 826 GVGISPEGQEKLFQSFSQVDNSTTRQYGGTGLGLAICKQLVDLMGGEIGVESQVGKGS 883 >gi|117926806|ref|YP_867423.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610562|gb|ABK46017.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1271 Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 88/287 (30%), Positives = 154/287 (53%), Gaps = 18/287 (6%) Query: 543 IIIKKLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 I I+ +P++ + L +DI+ KQ + A + AE+ + KS+FLA +SHEIRTP Sbjct: 851 IRIRLIPWTDGHYVRLLVANDITVLKQAQEASRQAMEQAERANRAKSEFLATMSHEIRTP 910 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH- 658 + ++G S+++ L NP+ ++ I ++G +LD++ND+LD+SKIE+G++ L Sbjct: 911 MNVVVGMSDIL----LESLPNPQAQKHIQLIQKAGTTLLDLINDILDLSKIEAGQLELEH 966 Query: 659 --FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715 F P+ L + + I++ Q+ A K + + +S +IP ++ D ++QI +N+L NA Sbjct: 967 AVFNPILL---IEDTIAIFQMQAKLKGLTLTSSMTGHIPHALMGDRARLRQILVNLLGNA 1023 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 I FT G + +N++ V D+GVG+ + L + F Q + R G+G Sbjct: 1024 IKFTEKGS--VEVQAGYANQQFWYAVVDSGVGIGSDSLLRIFDKFTQADSGVARRFGGSG 1081 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGT--LIEIIFPLYDTSHPHDCI 820 LGL + K +++ G ST +G+ I P+ D P D + Sbjct: 1082 LGLAICKNLMELMGGTIETQSTLGQGSRFYCAIPAPIADHLLPSDVV 1128 >gi|239907500|ref|YP_002954241.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797366|dbj|BAH76355.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1133 Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 99/356 (27%), Positives = 177/356 (49%), Gaps = 12/356 (3%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +L++ DG +++ + ++ +N A ++ GY +++ + + + L E+ Sbjct: 492 LLDSMGDGFVVLSSDYRLVESNPAFQEMTGYGPDELEKMTYRDITPEAWHKPEERLLAEV 551 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572 + + EK K+ +L + + + P S Y + DI++ K + L Sbjct: 552 DAKGSAEVFEKEY--RRKDGSILPVAVRPHRHPESPGEDRRYFAVVRDIADVKAIEADLR 609 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 AK+ AE + KSDFLA++SHEIRTPL A+IG +E+ P +E A + Sbjct: 610 QAKEAAETANRAKSDFLAKMSHEIRTPLHAVIGMTELTLGTELSPQQRD-ALETAR--EA 666 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 +GNL L I+ND+LD+S+IE+ + L + L ++ ++ A K + + + A Sbjct: 667 AGNL-LGIINDVLDLSRIEAKGLELVIQDFDLRRTLAGVARTLRPQAARKGLFLTLAVAP 725 Query: 693 NIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMTN 750 N PR + D V+QI LN++ NA+ FT GG + ++ ++ L V DTG+G+ Sbjct: 726 NTPRHVRGDQGRVRQILLNLVGNAVKFTREGGVTVTVAAPDGDPGQLELAVADTGIGIAP 785 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 LE+ F Q + + GTGLGL + + +V + G+ + S P +GT+ + Sbjct: 786 DRLERIFDMFTQADRTVALNFGGTGLGLAICRELVRSMGGEIAVDSVPGQGTVFRV 841 >gi|298490277|ref|YP_003720454.1| response regulator receiver sensor signal transduction histidine kinase ['Nostoc azollae' 0708] gi|298232195|gb|ADI63331.1| response regulator receiver sensor signal transduction histidine kinase ['Nostoc azollae' 0708] Length = 446 Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 145/249 (58%), Gaps = 8/249 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++E+ +L + + + + S K+ FLA +SHE RTP+ AIIGFS+++ +FG L N + Sbjct: 154 ERQREQIQLQNLRLL--EASRLKTKFLATISHEFRTPMNAIIGFSQILLRPKFGQL-NSQ 210 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 ++ I +G +L ++N++LD SK+ESG++ L E + L++ V+ ++S + A K Sbjct: 211 QVDMVERILNNGKHLLMLLNEVLDFSKLESGRLELKPEILDLEKIVNNSVSEIMSLAEAK 270 Query: 683 RI--LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 ++ ++ T N + I D V+QI +N+L+NA+ FT SGG I + + + + Sbjct: 271 KLSLVVETDLQNTL--IFNDSVRVRQILINLLANAVKFTESGG-IWVEVKEITQNRLTIT 327 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 +RDTG+G+++ + + + F Q+ + GTGLGL + ++V GK ++ S Sbjct: 328 IRDTGIGISSKDFKHIFEAFRQVDQGISRKYPGTGLGLAITDSLVQMMGGKIFLESKLGV 387 Query: 801 GTLIEIIFP 809 G++ +I P Sbjct: 388 GSIFKIELP 396 >gi|75907391|ref|YP_321687.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75701116|gb|ABA20792.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] Length = 676 Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 86/241 (35%), Positives = 128/241 (53%), Gaps = 4/241 (1%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A AE S +S+FLA +SHE+ TPLT +IG S + G L R +Y I Sbjct: 432 LRDALLAAEAASRLRSEFLATISHELLTPLTYVIGMSSTLLRWPLGELSQ-RQRDYLQTI 490 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI-SLVQLYANEK-RILIRT 688 SG +LD++ND+LD+S+IE+GK L+ SL + I SLV+ +EK + + Sbjct: 491 HDSGEHLLDMINDILDLSQIEAGKTVLNIAEFSLIKVAENTIESLVEKALSEKVNLKLDL 550 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 R AD ++QI N+L+NAI FTP GG + + + I +V DTG+G+ Sbjct: 551 QIDPRRDRFTADAARIEQILWNLLTNAIKFTPEGGNVTLRV-WVEEDTSIFQVEDTGIGI 609 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L + F Q+ + R EGTGLGL L K +V+ + G+ + ST G++ + Sbjct: 610 PEEQLPLLFEKFQQLDTPYRRRYEGTGLGLALTKQLVELHRGRIEVESTVGIGSIFTVWI 669 Query: 809 P 809 P Sbjct: 670 P 670 >gi|197116410|ref|YP_002136837.1| response receiver sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197085770|gb|ACH37041.1| response receiver sensor histidine kinase, PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 511 Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 106/404 (26%), Positives = 184/404 (45%), Gaps = 73/404 (18%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF--------GYPVEDILR 494 +RKME ++L+ +D + ++ +G I++ +R ++L G +E++L+ Sbjct: 136 ERRKME-------AVLQGMADLLVAVDLQGRIITWSRQAARLLAAEGESLLGKTLEEVLK 188 Query: 495 K-------PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 P L P + YL +I SL + L + E S+ II Sbjct: 189 AEVPGGELPARTVLRTGEPRLDVGYLLKIGSLTVPVLSSAAPLWNANGELAGSVEII--- 245 Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 DIS+ K+ + + K DF++ +SH++++P+TA++G Sbjct: 246 -----------RDISKLKELEQE--------------KEDFVSMLSHDLKSPITAVVGSI 280 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 ++++ + GP+ P EY N S ++++++ LL I K E+GKM L+F Sbjct: 281 DLVREAKLGPV-TPDQSEYLNAAIESCEEMVEMIDTLLGIHKFEAGKMKLNFREEDPSLL 339 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 ++ +++ Q A I + + ++P I AD S +I N+LSNA+ FTP GG+I + Sbjct: 340 INRSVTKFQTPAQRGAISLFATLPPSLPAISADRSSFSRILGNLLSNAVKFTPEGGEIEV 399 Query: 728 STTHTSN----------------------EEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 S + E V +RVRD+GVG+ L F Q N Sbjct: 400 SADLVQDPAPVLAHVPEECYPGQELPREGEFVRIRVRDSGVGIPQESLGSIFDRFVQARN 459 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +Q + GTGLGL + VDA+ G + S P G++ ++FP Sbjct: 460 RRQGKTRGTGLGLAFCRKAVDAHGGYIWAESEPGAGSVFTLMFP 503 >gi|255292073|dbj|BAH90553.1| serine/threonine kinase [uncultured bacterium] gi|255292618|dbj|BAH89728.1| serine/threonine kinase [uncultured bacterium] Length = 2112 Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 105/389 (26%), Positives = 195/389 (50%), Gaps = 33/389 (8%) Query: 443 NKRKMEIEVMQLCSILEATSD-----------GIAIINREGIILSTNRAVSKLFGYPVED 491 ++ + IE +L + L++T D G+ I+ +G+++S N ++++ G+ D Sbjct: 1424 SQAAISIENARLYADLQSTQDEYRALYDNAIEGLFRISPDGLLVSANPTLARILGFSSID 1483 Query: 492 ILRKPFTVFLEQN--TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL--LSLRIIIKK 547 L+ + +++ T +L+ + L E G T++ ++ ++L + Sbjct: 1484 ALQDEYRDLIDRAFLTNEQAGQFLSALEDQQLVNGFE--AQGVTRDGRVFWMALTARLNH 1541 Query: 548 LPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 P Y ++ DISE + E+ + ++IAE + KS+FLA +SHEIRTP+ AI+GF Sbjct: 1542 DPELGDYIDGSLIDISE-RIEREQADKQRQIAEAATQAKSEFLANMSHEIRTPMNAIVGF 1600 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 S++ + + EY I + +L +V+D+LD SKIE+GK+ L P L E Sbjct: 1601 SKLALESSL----DRKQHEYVTSIRNAAENLLTLVSDVLDFSKIEAGKLVLETRPFRLSE 1656 Query: 667 AVSEAISLVQLYANEKRILI----RTSFANNIPR---ILADLRSVKQIALNILSNAIHFT 719 ++E L + + + + RT P + D ++Q+ +N++ NA+ FT Sbjct: 1657 TLTEVERLFRTEVRRRNLTLEIEDRTGEHPGFPEDGVLTGDALRIQQVLVNLVGNAVKFT 1716 Query: 720 PSGGQIIISTTHTSNEEVI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 +GG +I + +N + L V DTG+G+ +L + + F Q S R GTGL Sbjct: 1717 ETGGIVIGAEVIAANHGQLVLNLSVTDTGIGIPQAQLARLFESFEQAETSTTRRYGGTGL 1776 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 GL +++ +VD G+ ++ ST +G+ + Sbjct: 1777 GLTISERLVDLMGGEIHVTSTVGEGSCFQ 1805 >gi|42523042|ref|NP_968422.1| two-component hybrid sensor and regulator [Bdellovibrio bacteriovorus HD100] gi|39575247|emb|CAE79415.1| two-component hybrid sensor and regulator [Bdellovibrio bacteriovorus HD100] Length = 588 Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 108/404 (26%), Positives = 182/404 (45%), Gaps = 44/404 (10%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL---- 501 + +I + +IL++ + +N +G+I NR K FG+ +++L K + Sbjct: 26 RFQISEQRTRTILDSAYNAFIGMNSDGLITDWNRQAEKTFGWKDKEVLGKELADIVIPHK 85 Query: 502 -EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 + + HYL L + +E L E + + I + + +HD Sbjct: 86 YREAHKKGLAHYLATGEGPVLNKRMEITALHRDGHEIPVEMTIFPFEHNGKHLFGSFLHD 145 Query: 561 ISEWKQEKNKLSHA-------------------KKIAEKESSH-------------KSDF 588 I+E K ++KL K++ E S K +F Sbjct: 146 ITERKATESKLRSLYQDLEHRVQERTQELALANKQLKEDASIRQRLYEQAQTANRLKDEF 205 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA-NYIDRSGNLVLDIVNDLLDI 647 LA VSHE+RTPL I+G S+++K+ P +P + + N I R+ + + I+NDLLD+ Sbjct: 206 LATVSHELRTPLNVILGHSDILKD----PATSPEEAKVSINAIHRNAQIQVQIINDLLDV 261 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707 S+I SGK+ LH +P+ ++ V A VQ+ A K I +R + + D ++Q+ Sbjct: 262 SRIISGKLQLHVKPIDIESVVEAAYESVQIAAKSKNIKVRVEGPERLKSVGGDPERLQQV 321 Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 N+LSNAI FTP GG I + ++ + V + V D G G+ L + F Q + Sbjct: 322 LWNLLSNAIKFTPKGGNITVKLSNVES-RVQIDVIDNGKGIDPEFLPYVFERFRQEDATT 380 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPL 810 R G GLGL + + +V+ + G S P +G + P+ Sbjct: 381 TRRYGGLGLGLAIVRHIVEGHGGTVAATSAGPNQGAKFTVSLPV 424 >gi|32474842|ref|NP_867836.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32445382|emb|CAD75383.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 865 Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 103/391 (26%), Positives = 190/391 (48%), Gaps = 40/391 (10%) Query: 437 DVDTR-INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 DV TR ++K+++E +L +++ + + I++ +G++ N+ ED++ + Sbjct: 311 DVTTRRLHKQELEEREKRLHRVIDNMNSFVGIVDLDGVLQEVNQTAIDAASVAREDVIGR 370 Query: 496 PFT---------VFLEQNTPSVMNHYLTEILSLDLRQTLEK------------ITLGSTK 534 PF EQ SV E D+ + + S + Sbjct: 371 PFCEAFWWSHDDQVAEQVKSSVQAAIRGETSRFDIAYRIAGDSSRMVDVSFVPVRDESGR 430 Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 +E L ++ D+++ + + L A AE+ + KS FLA +SH Sbjct: 431 DESGPPLYVVASGF-----------DVTDRYEFERSLKDATDAAEQANRAKSQFLANMSH 479 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 EIRTP+T+I+G++++I ++ + + I R+G +L ++ND+LD+SKIE+ Sbjct: 480 EIRTPMTSILGYADLISQKQI----DEDTRSHVATIRRNGAFLLGLINDILDLSKIEADH 535 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILS 713 M + E V+L + + +S++Q+ A EK + IR + IPR I AD + ++QI +N++ Sbjct: 536 MEVFDESVNLIHLIEDVLSIMQVRAAEKDLEIRVDYCGKIPREIQADSKRLRQILVNLVG 595 Query: 714 NAIHFTPSGGQIIISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 NA+ FT +G + S+ V V DTG+G+++ ++K +PF Q S Sbjct: 596 NAVKFTEAGHVRVAVRAEQSDRRTRVHFDVVDTGIGISDERMKKLFQPFSQGDPSIMRTY 655 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GTGLGL +++ +V G+ S +G+ Sbjct: 656 GGTGLGLVISQRLVAMLGGEITARSRVNEGS 686 >gi|124267680|ref|YP_001021684.1| signal transduction histidine kinase-like protein [Methylibium petroleiphilum PM1] gi|124260455|gb|ABM95449.1| signal transduction histidine kinase-like protein [Methylibium petroleiphilum PM1] Length = 1317 Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 76/255 (29%), Positives = 142/255 (55%), Gaps = 6/255 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T D++ K + + K AE S KS FL+R+SHE+RTPL A+IGF+++++ Sbjct: 916 THTDVTRQKMAEQAMRD-KAAAELASQAKSAFLSRMSHEMRTPLNAVIGFAQLLRKD--D 972 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 G R ++ ++I ++G +L +VND+LD+ ++E G++++ E + L AV A+ L++ Sbjct: 973 APGGARVAQFGDHILQAGEHLLALVNDVLDLQQVEEGRLSIRLESLPLRAAVDAALELIR 1032 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-HTSNE 735 A ++R+ + ++ + AD + ++Q+ LN+LSN + + GG++ S + Sbjct: 1033 PQAAQRRVTVCNLIEPDLS-VQADPQRLRQVLLNLLSNGVKYNREGGELHCSAVLDGTTP 1091 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 L + D G G+ +L + +PF ++ + EGTGLGL +++ + + G+ + Sbjct: 1092 CCTLLIEDQGFGLEADDLARLFQPFERL-GRETSAIEGTGLGLVISRRLAEEMNGRLSLS 1150 Query: 796 STPAKGTLIEIIFPL 810 S P GTL + PL Sbjct: 1151 SRPGHGTLARLELPL 1165 >gi|315127393|ref|YP_004069396.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas sp. SM9913] gi|315015907|gb|ADT69245.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas sp. SM9913] Length = 924 Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 84/247 (34%), Positives = 140/247 (56%), Gaps = 10/247 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + +++ + +L+ AKK A+ + KSDFLA++SHE+RTPL +IGF+ Q + N Sbjct: 266 LEQYETQNIQLTMAKKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTR----QLYKTPLN 321 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 +Y + I+ S N ++ I++D+LD SK+E+G M L L ++V+E ++L+ A+ Sbjct: 322 KNQKDYLDTIELSANSLMTIISDILDFSKLEAGAMELESIQFQLRDSVNEVMTLLAPSAH 381 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 +K++ + +P + D KQ+ +N+LSNAI FT G I + +H +E Sbjct: 382 DKQLELSIYINPQVPDHLTGDPTRFKQVLINLLSNAIKFTEKGA-IKVDISHRLLDEERT 440 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V++ V DTGVG+ + + FGQ +S + GTGLGL + K +V+A G+ + Sbjct: 441 SVLVSVADTGVGIPADKQDALFTAFGQADSSITRKFGGTGLGLIITKHIVEAMSGRITLN 500 Query: 796 STPAKGT 802 S P GT Sbjct: 501 SAPGSGT 507 >gi|207724848|ref|YP_002255245.1| composite two-component transcriptional regulatory protein (sensor histidine kinase and response regulator hybrid) [Ralstonia solanacearum MolK2] gi|206590073|emb|CAQ37034.1| composite two-component transcriptional regulatory protein (sensor histidine kinase and response regulator hybrid) [Ralstonia solanacearum MolK2] Length = 675 Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 88/259 (33%), Positives = 138/259 (53%), Gaps = 13/259 (5%) Query: 560 DISEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 DI+E +Q + + S A++ AE+ S K DFLA VSHE+RTPL A++G+++++ Sbjct: 266 DITEHRQAEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLAM 325 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + P + I+RS + +++DLLD+S I SGK+ L PV L + + A Sbjct: 326 R---PYDEAMFRRGLEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERAR 382 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 ++ A +K+I I T + +P + D +KQ+ N+L+NA+ FTP GG I + Sbjct: 383 ETIEPMARQKQIAIDTEY-PPVPLLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVC-VQA 440 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 E ++ VRDTG+G+ L F Q S R G GLGL +AK +V+ + G+ Sbjct: 441 LPEGLVATVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRI 500 Query: 793 YIFSTPAK-GTLIEIIFPL 810 S A GT + + PL Sbjct: 501 TAASNGANLGTTMAVTLPL 519 >gi|92115685|ref|YP_575414.1| PAS/PAC sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] gi|91798579|gb|ABE60954.1| PAS/PAC sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] Length = 838 Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 135/260 (51%), Gaps = 4/260 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT HDI++ + + L E K DF+ VS+E+R+PLT IIGF+ ++ + Sbjct: 578 LTFHDITDSENVERALRERNDALETADQMKVDFVHHVSYELRSPLTTIIGFAHLMNDPGT 637 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GPL + +Y +YI S + +L + N++LD++ I++G M L PV + + ++ A + Sbjct: 638 GPL-TEKQAQYIDYITSSTDALLALTNNILDLATIDAGAMTLELGPVDVRKTIAAATEGI 696 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 Q +RI++ +I + D R + Q+ N+L+NA F+P G I +S T++ Sbjct: 697 QDRLTRERIVLEVDVDPDIGNFIGDERRIIQVLYNLLANAAGFSPQGAVIAVSARRTAH- 755 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V V D G G+ +K F N + R G GLGL L ++ V+ + G+ + Sbjct: 756 SVSFAVTDDGPGIPPEVKDKVFDWFESRANGSRHR--GAGLGLSLVRSFVELHGGRVHFD 813 Query: 796 STPAKGTLIEIIFPLYDTSH 815 T +GT + FPL T+H Sbjct: 814 PTVKRGTRVVCDFPLDQTAH 833 >gi|254292589|ref|YP_003058612.1| Hpt sensor hybrid histidine kinase [Hirschia baltica ATCC 49814] gi|254041120|gb|ACT57915.1| Hpt sensor hybrid histidine kinase [Hirschia baltica ATCC 49814] Length = 943 Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 134/247 (54%), Gaps = 11/247 (4%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK+ AE ++ KSDFLA +SHEIRTP+ ++ +E++ + R+ YA I RS Sbjct: 268 AKEDAEAANAAKSDFLATMSHEIRTPMNGLLVMAEMLSAANL----SMRHRRYAEIISRS 323 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +L I+ND+LD+SKIESGK++L P D V + L A + I T + N Sbjct: 324 GKSLLTIINDILDLSKIESGKLDLETAPFEPDAMVEDIACLFWEKARSNNVEIATYISPN 383 Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN-EEVILR--VRDTGVGM 748 P+ IL D+ + Q+ N+++NA+ FT GG +I + N + V LR V DTG+G+ Sbjct: 384 TPQSILGDVTRLNQVVTNLVNNALKFTEKGGVEIRVDGRLNKNGQRVRLRIDVIDTGIGI 443 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII- 807 L++ + F Q S + GTGLGL + K ++ A G + S KG+ I Sbjct: 444 PADRLDQIFEAFSQADQSTTRKFGGTGLGLAVCKRLMHAMGGDVKVASAEGKGSCFTAIA 503 Query: 808 -FPLYDT 813 FP+ +T Sbjct: 504 DFPIVET 510 >gi|237746076|ref|ZP_04576556.1| two-component system sensor histidine kinase [Oxalobacter formigenes HOxBLS] gi|229377427|gb|EEO27518.1| two-component system sensor histidine kinase [Oxalobacter formigenes HOxBLS] Length = 790 Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 88/259 (33%), Positives = 139/259 (53%), Gaps = 16/259 (6%) Query: 556 LTMHDISEWKQEKNKLS-------HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 L + D++E + + KL +A ++AE+ + KSDFLAR+SH+IRTP+ AI G Sbjct: 241 LDITDVTELRDLQKKLEERTAMLRNALEMAERANQVKSDFLARMSHDIRTPMNAITGLIS 300 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 + ++ P+ + E N ++ S +L ++ND+LD+SKIESG+M L S + Sbjct: 301 IARDCVNDPV---KIRECLNKLEFSSGSLLSLINDILDMSKIESGRMELKKREFSFVAFI 357 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIII 727 + +S V A +KRI A N+ + + D +KQI N+LSNAI FT SGG++ + Sbjct: 358 DDIVSAVYAQAQKKRIGFHVEIAENVRELYSGDALKLKQIVSNLLSNAIKFTDSGGRVEL 417 Query: 728 STTHTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 E++ V D G+GM +E+ PF Q ++ RG G+GLGL + + Sbjct: 418 QVEEGQRIKRTCELVFTVSDNGIGMEPDVIERVFLPFEQDVRHRENRG-GSGLGLAIVHS 476 Query: 784 MVDANMGKFYIFSTPAKGT 802 V G+ + S P KG+ Sbjct: 477 YVQLMNGRVDVESEPGKGS 495 >gi|182411917|ref|YP_001816983.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839131|gb|ACB73383.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 1313 Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 104/372 (27%), Positives = 185/372 (49%), Gaps = 21/372 (5%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQ 503 R+ + E +L + T + + II+ G I N + S++ Y +++++ R P Sbjct: 652 RESQAETRKLSLVAAKTDNPVLIISPAGSIEWVNESFSRVMEYSLDEVVGRSPIDFVAAA 711 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559 T + + ++ + + +T +K + LR+ ++ + + + + Sbjct: 712 ETDARTLQEIDAAIAQGRAHSGDVVT--HSKRGRKYHLRVELQPVRNDAGQLQNFIVIET 769 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ + L AK A++ S KSDFLA +SHEIRTP+ +IG + ++ Sbjct: 770 DITARVDTELALRRAKTEADEASRAKSDFLASMSHEIRTPMNGVIGMTSLLMETDL---- 825 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +P ++ N I SG +L I+ND+LD SKIESGKM+L P L + E++ L L A Sbjct: 826 SPEQRDFVNTIRTSGEALLTIINDILDFSKIESGKMDLEHLPFELATCLEESLDLFALQA 885 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST-----THTS 733 + K + + A ++P I+ D+ ++QI +N+++NA+ FT S G I I T + Sbjct: 886 SAKHLELAYHIAPDVPEWIIGDITRLRQIVVNLVNNAVKFT-SAGSIAIEVRRRPPTVPA 944 Query: 734 NEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 N + + VRDTG+G+ L++ K F Q+ +S + GTGLGL + + + G Sbjct: 945 NLKRFPLEFVVRDTGIGIPAERLDRLFKAFSQVDSSTTRKYGGTGLGLAICQRLSILMGG 1004 Query: 791 KFYIFSTPAKGT 802 + S +G+ Sbjct: 1005 GIRVESKVGEGS 1016 >gi|312887628|ref|ZP_07747221.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311299894|gb|EFQ76970.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 822 Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 111/405 (27%), Positives = 189/405 (46%), Gaps = 60/405 (14%) Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + Q + E++ TR N +I+E T GI ++ G N+ S++ G Sbjct: 150 LMQTQYDIEELSTRFN------------AIMETTPQGIVFVDDSGKGAWVNKQASQILG- 196 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ---TLEKITLGSTKEEKLLSLRII 544 V ++N P ++ +T + S + Q E + L S+ + LL R I Sbjct: 197 -----------VNNDKNEPLAISMAMTRLRSAAINQEEIQREGMKLFSSPNQSLLDWRWI 245 Query: 545 IKKLPFS-----SCYSLTMHDI-----------------SEWKQEKNKLSHAKKIAEKES 582 P S SC + +I S+ + +L +KIA++++ Sbjct: 246 FGD-PVSLVLSVSCTPVVSENIRGRLWAFTDITSLHITNSQLSELNIELDEKRKIADEQN 304 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 KS FLA +SHEIRTP+ +IG + ++ + +Y I SG +L ++N Sbjct: 305 QAKSAFLANMSHEIRTPMNGVIGMTSLLISTSL----TDEQQDYVETIRISGETLLSLIN 360 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADL 701 D+LD SKIESGKM L +P SL + E L+ + A+EK + + ++P I+ D+ Sbjct: 361 DILDFSKIESGKMELETQPFSLTSVIEETYDLLTVKADEKGLDLLYLIDADVPSEIIGDV 420 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI----LRVRDTGVGMTNYELEKAM 757 ++QI +N++SN I FT G+I+IS I V+D+G+G+ + + Sbjct: 421 TRLRQILVNLVSNGIKFTEK-GEILISIELLEKAGSIYTLQFSVKDSGIGIPQDKFHRLF 479 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + F Q+ +S + GTGLGL +++ +V+A G S +G+ Sbjct: 480 QSFSQVDSSTTRKHGGTGLGLAISQRLVEAMQGSIRAESKYGEGS 524 >gi|327539788|gb|EGF26391.1| signal transduction histidine kinase with CheB and CheR activity [Rhodopirellula baltica WH47] Length = 1739 Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 84/262 (32%), Positives = 147/262 (56%), Gaps = 19/262 (7%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + L +++ A + S+ KS FLA +SHEIRTP+TAI+G++E++++ + + + + Sbjct: 1345 QAETLRESERRANEASASKSAFLANMSHEIRTPMTAILGYAELLQD----IIQDTEGLHH 1400 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQLYANEKR 683 I R+G+ +LDI+ND+LD+SKIE+GK+++ F+P L E V S++++ A E Sbjct: 1401 LQTIRRNGDYLLDIINDILDLSKIEAGKLDVESERFDPAHLIEDVR---SIMEVRAKEAG 1457 Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + + + IP I +D + +KQ+ +N++ NAI FTP G ++ + + + V Sbjct: 1458 LELTVEYGQQIPASIQSDAKRLKQVLINLVGNAIKFTPEGNVRLVVRMDSDPIRLCIDVI 1517 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+T + E+ PF Q +S GTGLGL +++ + + G + S G+ Sbjct: 1518 DTGIGITLEQQEQLFLPFSQGDSSVNRTFGGTGLGLTISRRLAEMLGGTIHFQSEVGVGS 1577 Query: 803 LIEI-IFP-------LYDTSHP 816 + +FP L D S P Sbjct: 1578 TFTLSVFPGDLTGVALVDHSQP 1599 Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 5/83 (6%) Query: 435 PEDVDTRINKRKMEIEVMQLCSILEA----TSDGIAIINREGIILSTNRAVSKLFGYPVE 490 P VD R +++K E++ ++ LEA DGI I+R G I S N A +K+FGY V+ Sbjct: 1081 PSGVDIR-DRKKAELKQQEVAVRLEAIFNTAVDGIITIDRRGTINSVNVAAAKIFGYGVD 1139 Query: 491 DILRKPFTVFLEQNTPSVMNHYL 513 ++ V + + S + YL Sbjct: 1140 ELTGSNINVLIPEPEHSEHDGYL 1162 >gi|309792207|ref|ZP_07686679.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308225748|gb|EFO79504.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 2607 Score = 134 bits (336), Expect = 9e-29, Method: Composition-based stats. Identities = 99/374 (26%), Positives = 184/374 (49%), Gaps = 26/374 (6%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV---FLEQNTP 506 E + ++ + ++G+ +++ +G + N A ++ P E +LR+P + E + Sbjct: 2241 ESSKSAAVFRSVTEGVIVLDPQGQVTLFNPAAEQVLEIPAERLLRQPLNRLHDYGEDDDQ 2300 Query: 507 SVMNHYLTEILSLDLRQTLE--KI---TLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMH 559 L L L+Q E KI +L T ++++L I P Y + + Sbjct: 2301 RKRAQTLYTGLMTGLKQVQETDKIYSSSLDLTNPNQVIALNIAPVIGPDGQGYGKVIVLR 2360 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ ++I E+ K F++ VSHE+RTPLTAI G+ +V+ L Sbjct: 2361 DIT------------REIEADEA--KRQFISDVSHELRTPLTAIKGYVDVLLLSGTQTLT 2406 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + + Y I + N + ++ D+L+ S+ ++ K L+F +S+ E + E +S ++L Sbjct: 2407 SDQ-VSYLGIIKNNTNRLKALIEDILEFSRPDASK-KLNFTRLSIPEVIDEVVSSLRLEY 2464 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K + + +++P ++AD + + Q+ N+ SNA+ +T GG I + + Sbjct: 2465 QRKDMSVEVDAPHDLPTVMADQKRITQVVFNLFSNAVKYTFEGGHIHVRAFLNRANMFQV 2524 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTGVGM+ + +K +PF + N + GTGLGL +AKA+++ + G+ ++ S Sbjct: 2525 DVEDTGVGMSPEQRKKLFRPFYRADNPLRDVAGGTGLGLSIAKALIEQHGGEMWVTSEIG 2584 Query: 800 KGTLIEIIFPLYDT 813 KG+ I PL T Sbjct: 2585 KGSTFSFILPLQQT 2598 >gi|190572926|ref|YP_001970771.1| putative two-component sensor histidine kinase response regulator fusion protein [Stenotrophomonas maltophilia K279a] gi|190010848|emb|CAQ44457.1| putative two-component sensor histidine kinase response regulator fusion protein [Stenotrophomonas maltophilia K279a] Length = 923 Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 86/259 (33%), Positives = 140/259 (54%), Gaps = 16/259 (6%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 HDIS +Q + LS A++ A+ + KS FLA +SHEIRTPL ++G E++ + Sbjct: 423 HDISRHRQAQAALSSARQAADAANQAKSAFLATMSHEIRTPLYGVLGTLELLGHTSL--- 479 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLV 675 + R +Y I+ S +++L +++D+LD+SKIESG+++L F P L E+V + + Sbjct: 480 -DARQSQYLRTIESSSSVLLQLISDVLDVSKIESGQLSLEPAAFSPRELTESVLRSFA-- 536 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTS 733 A K + I +P R+L D ++Q+ N+LSNAI FT G ++ + Sbjct: 537 -ASATCKGLQILVCTDPRLPTRVLGDADRIRQVLGNLLSNAIKFTEHGRVMLRVRQVQRE 595 Query: 734 NEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 E +L +V DTGVG+ E + +PF Q+ + +GTGLGL ++ +V G+ Sbjct: 596 GESSVLAWQVTDTGVGIAAEEQARLFEPFRQVRGAAS--AQGTGLGLSISDRLVRLMSGE 653 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + S P G+ + PL Sbjct: 654 LQVVSEPGLGSSFSVRLPL 672 >gi|302669371|ref|YP_003832521.1| two component system histidine kinase/response regulator hybrid protein [Butyrivibrio proteoclasticus B316] gi|302397035|gb|ADL35939.1| two component system histidine kinase/response regulator hybrid protein [Butyrivibrio proteoclasticus B316] Length = 1409 Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 143/245 (58%), Gaps = 7/245 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +++ +++ AK AE+ ++ KS FLA +SHEIRTP+ I+G E++ + + + Y Sbjct: 793 RKQYKEIAIAKDEAERANTAKSRFLANMSHEIRTPINTIMGMDELLLREAHDNVPDSYYT 852 Query: 625 EYANY---IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 NY I + +L ++ND+LDISKIESGKM+L + E + I+++++ ++E Sbjct: 853 AVINYGVDIKNAAESLLGLINDVLDISKIESGKMHLVEQEYDTVECLRGIITMIRVKSSE 912 Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL 739 K + T+ +IP R+ D+ +KQI LN+L+NA+ +T GG + ++ T + ++ L Sbjct: 913 KDLSFDTNIDESIPKRLYGDIGKIKQIVLNLLTNAVKYTEKGGFTLTVTVTSKNADKCSL 972 Query: 740 R--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 R V+DTG+G+ +EK + ++ + +GTGLGL +++ + G+ + ST Sbjct: 973 RFSVKDTGIGVKAENMEKLFSAYERLDEEKNSGIQGTGLGLDISRRFAELMNGRLWCEST 1032 Query: 798 PAKGT 802 +G+ Sbjct: 1033 YGEGS 1037 >gi|313682762|ref|YP_004060500.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] gi|313155622|gb|ADR34300.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] Length = 977 Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 112/363 (30%), Positives = 187/363 (51%), Gaps = 29/363 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +++E+ + IA++NR+G++++ N + G+ ++I +P+ F + P M+ + Sbjct: 263 TLVESANAIIAMLNRDGVMININPYGERFTGFTQQEIASEPY--FWARFLPPEMHDKVVN 320 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----------YSLTMH-DISEW 564 I+S K T+ + + +S I + +S+ Y T+ DI+E Sbjct: 321 IIS-----NARKGTITRSFQNAWVSKDGIERMFEWSNALVLDEKGQMQYVTTIGIDITEQ 375 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ + +L AK+ AE + K+DFLA +SHEIRTPL IIG +E++ P ++ Sbjct: 376 KERQLELEKAKEAAETAAKAKADFLANMSHEIRTPLNGIIGLTELVLKTDLEP-KQRDFL 434 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E +N S + +LDI+ND+LD SKIE+GK +L +P L+ + +SL + A +K I Sbjct: 435 EKSNL---SSHALLDIINDILDYSKIEAGKFDLENKPFELNNVIQNIMSLFEFQAVQKGI 491 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG--GQIIISTTHTSNEEVI---L 739 ++ N ++ D + QI N++ NA+ FT SG G +IST NEE I Sbjct: 492 ILTYDIQLNENVMIGDALRLTQILTNLVGNAVKFTESGHIGIRVISTDE--NEEDIRLQF 549 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+GM K + F Q S + G+GLGL ++K +V G ++ S Sbjct: 550 SVEDTGIGMNAEAQNKLFQEFSQADTSITRKYGGSGLGLAISKQLVQMMGGDIWVESEEG 609 Query: 800 KGT 802 G+ Sbjct: 610 IGS 612 >gi|296446361|ref|ZP_06888306.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] gi|296256134|gb|EFH03216.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] Length = 750 Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 81/236 (34%), Positives = 132/236 (55%), Gaps = 4/236 (1%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K AE + KS FLA +SHE+RTPL AIIGFSE+++ Q FG LG+P+Y+EY ++I + G Sbjct: 507 KGEAEAANLAKSQFLANMSHELRTPLNAIIGFSEMMQAQVFGALGSPKYVEYCSHIHQGG 566 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +LD++ D+LD+S++E+G++ L + L A + A K I + + Sbjct: 567 RYLLDVLTDILDMSRLEAGRVRLEESEIDLSGAARATAERSRRAAEAKGIELIVDAREGL 626 Query: 695 PRILADLRS-VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 R D + VK IA+ ++SN++ FT +GG + + S V++ V DTG G+ + Sbjct: 627 -RCCGDHDAIVKAIAV-LVSNSLKFTAAGGCVRLR-ARRSYRAVLIFVEDTGCGIDARAV 683 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +PF Q + +G+GLGL +A++++ + G I S GT+ + P Sbjct: 684 AALGRPFEQPATVMENGMKGSGLGLAIARSLMALHGGSLRIRSRVGVGTIAMLRIP 739 >gi|170740901|ref|YP_001769556.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168195175|gb|ACA17122.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 984 Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 79/239 (33%), Positives = 139/239 (58%), Gaps = 11/239 (4%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE S K+DFLA +SHEIRTPL+++IG++E++ + L ++++ A+ I +G+ + Sbjct: 495 AEHASQAKTDFLASMSHEIRTPLSSVIGYTEMLLDD--AELTQRQHLQ-ASRIRSAGSAL 551 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L +V+D+LD SKIE+G+++L P +LD + A+++V+ A K + IR +PR Sbjct: 552 LTVVDDILDFSKIEAGQVDLDLVPFALDGLIENAVAIVRQLAERKGLEIRVELDPALPRA 611 Query: 698 L-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYE 752 L D ++QI LN L+NA+ FT G+++++ + + V DTG+G+ + Sbjct: 612 LVGDQNRLRQILLNFLNNALKFTRR-GRVVLAVEKAGDGAGGWPIRFSVTDTGIGIAPEQ 670 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT--LIEIIFP 809 + K F Q+ S + GTGLGL ++K +++ G + S P +G+ E++ P Sbjct: 671 QARLFKRFSQVDGSIRREFGGTGLGLAISKKLIELMGGAIGVRSAPGEGSTFWFEVLLP 729 >gi|115351649|ref|YP_773488.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD] gi|115281637|gb|ABI87154.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD] Length = 705 Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 133/228 (58%), Gaps = 6/228 (2%) Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 S KSDFLAR+SHEIRTP+ ++G +E+++ R + ++ + + RSG +L I++ Sbjct: 25 SAKSDFLARMSHEIRTPMNGVLGMTELLQRTRL----TSKQRKFVDTVYRSGQTLLVIID 80 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADL 701 D+LD SKIE+GK+ L +L + + + ++L++ A K + + A+++P R+ D Sbjct: 81 DILDFSKIEAGKLTLERIDFNLHQLLDDVVALMEPNAQRKELELVYQRADSVPQRMRGDP 140 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 ++QI N+L NAI FT G + +S ++ + ++ ++ D+G+G+ + +PF Sbjct: 141 VRLRQILTNLLGNAIKFTEHG-HVALSAAYSDDGRIVFKIADSGIGIAPDVAAQLFRPFQ 199 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q +S + GTGLGL +++ + + G + STP KG++ + P Sbjct: 200 QADSSTARKYGGTGLGLVISRQLAEMMGGTLALDSTPGKGSVFTVTTP 247 >gi|307719098|ref|YP_003874630.1| two-component system, sensor histidine kinase [Spirochaeta thermophila DSM 6192] gi|306532823|gb|ADN02357.1| two-component system, sensor histidine kinase [Spirochaeta thermophila DSM 6192] Length = 776 Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 98/363 (26%), Positives = 177/363 (48%), Gaps = 15/363 (4%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L +LE G+ +++ EG IL+ N + + E++ F + + V++ ++ Sbjct: 2 LLEVLEHVPVGMILLSPEGDILAANGRFFDMVDWTEEELDGVRFPQIIYSSDEPVVSSFI 61 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKL 571 + ++ Q + + K+ + R+ FS L DI++ K + L Sbjct: 62 ERLARGEVDQA-SILVRAARKDGSIAWWRL----WGFSRGGEVLLGAFDITDQKVTEEHL 116 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 ++ A + KS FLA +SHEIRTPL I+G +E++++ R + +Y I Sbjct: 117 RKEREEAIRSVQSKSRFLANMSHEIRTPLHTILGMTELLEDTRL----DEEQRDYVQQIR 172 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 SG +L ++ND+LD SKIE+GK+ + L E V +A+ +V L A++K + + Sbjct: 173 FSGEALLALINDILDYSKIEAGKLPMEIIEFDLYEVVEQAVGMVSLQAHKKHLEVVVDIG 232 Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTGVG 747 +PR + D ++QI +N+ +NA+ FT G ++ + V V DTG+G Sbjct: 233 EEVPRKVKGDPLRIRQILVNLANNAVKFTEKGHVFCRVQLVQERKGVAWVAFTVEDTGIG 292 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + + + F QI S R GTGLGL ++K++V+ G+ + S +G+ + Sbjct: 293 IPENKKHRLFRVFSQIDESTTRRFGGTGLGLAISKSLVEMMKGEIGVRSKEGEGSSFWFL 352 Query: 808 FPL 810 PL Sbjct: 353 LPL 355 >gi|182415595|ref|YP_001820661.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177842809|gb|ACB77061.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 606 Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 87/243 (35%), Positives = 137/243 (56%), Gaps = 18/243 (7%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 LS AK+ A+ + KSDFLA +SHEIRTP+ I+G +V+ G+ +E Sbjct: 218 GTLSQAKERADAANRAKSDFLATMSHEIRTPMNGIMGMLQVLH-------GSSLTVEQRA 270 Query: 629 YIDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLD--EAVSEAISLVQLYANEKR 683 ++ +GN ++ ++ND+LD SKIESGK L FE VS D A+ + +SL++ A EK Sbjct: 271 QVEIAGNSAESLMRLLNDILDFSKIESGK--LEFESVSFDLKAALHDVVSLLRPRAAEKG 328 Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVIL 739 + + +N+P ++ D +KQ+ LN+ NAI FT G ++ +S T++ V Sbjct: 329 LALELHLPDNLPDHVIGDSVRLKQVLLNLTGNAIKFTEQGEVALRVRVSQRDTTSARVGF 388 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 VRDTG+GM + +K + F Q +S R GTGLGL +++ + + GK + S+P Sbjct: 389 SVRDTGIGMDDATRQKLFQLFSQGDSSMNRRFGGTGLGLAISQRLAEHMGGKIEVRSSPG 448 Query: 800 KGT 802 +G Sbjct: 449 QGA 451 >gi|77359688|ref|YP_339263.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas haloplanktis TAC125] gi|76874599|emb|CAI85820.1| sensor protein barA [Pseudoalteromonas haloplanktis TAC125] Length = 918 Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 85/246 (34%), Positives = 142/246 (57%), Gaps = 8/246 (3%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + +++ + +L+ AKK A+ + KSDFLA++SHE+RTPL +IGF+ + PL N Sbjct: 266 LEQYETQNIQLTMAKKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTRQLHKT---PL-N 321 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 +Y + I+ S N ++ I++D+LD SK+E+G M L L + V+E ++L+ A+ Sbjct: 322 KNQKDYLDTIELSANSLMTIISDILDFSKLEAGAMELESIQFQLRDTVNEVMTLLAPSAH 381 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE-- 736 +K++ + + +P + D +KQ+ +N+LSNAI FT G ++ IS +E Sbjct: 382 DKQLELSIYISPQVPDHLTGDPTRLKQVLINLLSNAIKFTEKGAIKVDISHRLLDDERTS 441 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +++ V DTGVG+ + + FGQ +S + GTGLGL + K +V+A GK + S Sbjct: 442 ILVSVADTGVGIPVDKQDALFTAFGQADSSITRKFGGTGLGLIITKHIVEAMSGKITLNS 501 Query: 797 TPAKGT 802 P GT Sbjct: 502 APGNGT 507 >gi|253699901|ref|YP_003021090.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M21] gi|251774751|gb|ACT17332.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M21] Length = 584 Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 107/388 (27%), Positives = 185/388 (47%), Gaps = 62/388 (15%) Query: 444 KRKMEI---EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF-------GYPVEDIL 493 +R++E+ E QL +IL +G+ + +R+ ++ N A +F G P+ +I Sbjct: 236 ERQLELISSEKNQLDAILNGMGEGVMVTDRDAVVTLVNHAFCSMFATGAEVQGRPLLEIT 295 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL-EKITLGSTKEEKLLSLRIIIKKLPFSS 552 R P + Y +L RQ ++I L K +++ +P S Sbjct: 296 RHP-------------DLYAACREALSARQERHQEIALAGGKT-------VLVHWVPLSE 335 Query: 553 CYSL-----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 L HDIS +K+ +KI + DF+A VSHE+RTP+T I G++ Sbjct: 336 GDGLQGAVAVFHDISAFKR-------VEKI-------RRDFVANVSHELRTPVTVIKGYA 381 Query: 608 EVIKNQRFGPLGNPRYIE-----YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 E + + +P+ E N+ DR LV DLL +S++ESG+M + +PV Sbjct: 382 ETLLSGALAA--DPQRAERFLLIIQNHADRLSGLV----RDLLTLSELESGEMGMQLKPV 435 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 +LDEA+ +A+ LV EK + + + AD ++Q+ +N+L NAI ++ +G Sbjct: 436 ALDEAIRQALLLVGQRGEEKGVQLEQPAGEAGLTVQADRGRLEQVLINLLDNAIKYSETG 495 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 + + T + V + VRD+G+G+ +L + + F ++ ++ GTGLGL + K Sbjct: 496 KSVGVETAR-EGDLVRVSVRDSGIGIPEKDLPRLFERFYRVDEARSRDNGGTGLGLSIVK 554 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +V A+ G + S KG++ PL Sbjct: 555 HIVQAHGGTLDVKSEQGKGSVFSFTLPL 582 >gi|218890338|ref|YP_002439202.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58] gi|218770561|emb|CAW26326.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58] Length = 918 Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 82/257 (31%), Positives = 140/257 (54%), Gaps = 14/257 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL-- 618 I+ K+E + A + A E+ KS FLA++SHEIRTPL ++G +++++ PL Sbjct: 384 INALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDT---PLDR 440 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 G Y+E I SG+ ++ ++ND+LD ++IESGK++L L+E +S+ ++L Sbjct: 441 GQAAYVET---IASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQ 497 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TS 733 A EKR+ + +PR L D ++Q+ +N+LSNA+ FT G + + Sbjct: 498 AVEKRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAE-GHVAVRVQRRFDEGG 556 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E ++ V D+G+G++ + + F Q +S R G+GLGL +++ +V G+ Sbjct: 557 RERLLYSVSDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIE 616 Query: 794 IFSTPAKGTLIEIIFPL 810 + S P KGT + PL Sbjct: 617 VSSEPGKGTRFSVDLPL 633 >gi|239994514|ref|ZP_04715038.1| aerobic respiration control sensor protein ArcB [Alteromonas macleodii ATCC 27126] Length = 784 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 109/384 (28%), Positives = 189/384 (49%), Gaps = 47/384 (12%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVM--N 510 L SI++A+ D I N EG NR + G +++L P V+ E+ ++ + Sbjct: 160 LRSIIDASPDLIYYRNEEGRFAGCNRIAELMTGKTEQELLGLTPKDVYEEELARQIVASD 219 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--------IKKLPF--SSCYSLTM-- 558 H + E T S EE L LR +K++PF L + Sbjct: 220 HEVLE-------------TNASITEE--LWLRFADGRRRYFEMKRVPFFDKDGNRLGLLS 264 Query: 559 --HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 D++E KQ +N A K S+ K+ F+A +SHE+RTPL I+G S ++++ Sbjct: 265 FGRDMTERKQAENA-------AAKASTDKTRFIATISHELRTPLNGIVGLSRMLRDTEL- 316 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + + I S + +I ND++D+ K++ K+ L + +SL + E S+++ Sbjct: 317 ---SEEQFNWVSTIYASAITLGNIFNDIIDLDKLDRDKLELSLKTISLKDFTEELSSIIR 373 Query: 677 LYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 L A +K++ ++T+ +PR++ D ++QI NIL NA+ FT G + +S+T Sbjct: 374 LLAADKQLELKTTINEPLPRLVEIDGTRLRQILWNILFNAVKFTQKGHVSLTVSSTKPDG 433 Query: 735 EE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++ V + DTGVG+ E++K + Q+ + GTG+GL + K MVD G+ Sbjct: 434 DKAYVTFVIEDTGVGIPESEIDKIFAMYYQVDHPDHQSATGTGIGLAICKQMVDLMKGEI 493 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHP 816 ++ S KGT EI+ P+ ++ P Sbjct: 494 HVSSKVGKGTRFEIVLPVQISNSP 517 >gi|163749758|ref|ZP_02157004.1| two-component hybrid sensor and regulator [Shewanella benthica KT99] gi|161330571|gb|EDQ01529.1| two-component hybrid sensor and regulator [Shewanella benthica KT99] Length = 1176 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 99/361 (27%), Positives = 183/361 (50%), Gaps = 19/361 (5%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF--TVFLEQNTPSV--- 508 L + LEA+ D + I+ G I N A S+LFG+ E L + F +F++ + Sbjct: 372 LLATLEASQDALITIDITGRIQEFNEAASQLFGHSREQALGEIFEELIFVDIERKAFKEE 431 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568 + + +++++E +++ + + +++I +L + +HD+SE Q + Sbjct: 432 LEVFRKTGCGPAIKKSVELMSIRADGTHFPVEMKMIPVQLGDEILLTAFLHDVSERMQYE 491 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L AK+ AE S KS FLA +SHEIR+PL A++G E++ + + N YA+ Sbjct: 492 TELKQAKEQAELGSKAKSRFLATMSHEIRSPLNAVLGGVELMLDSKL----NKDQRIYAH 547 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKM---NLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 +G +L +ND+LD SKIE+G+M N+ F P + V++ + ++ ANEK + Sbjct: 548 TAKEAGTALLSTINDILDFSKIEAGQMVLKNMSFSPAKM---VAQVMQILAPKANEKGVN 604 Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRV 741 + T N+P ++ D + ++Q+ N++ NAI F+ G ++ I H ++ V Sbjct: 605 LATFINRNVPALVKGDAQRLRQVLHNLVDNAIKFSSGGCISVEMWIPDGHHQEVQLHCAV 664 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D G+G++ +K + F Q+ + GTGLGL + ++ G+ + S G Sbjct: 665 TDEGIGISLSAQKKLFQEFSQVHDQHNTNYTGTGLGLAICSELITMMGGEIELSSRLGHG 724 Query: 802 T 802 + Sbjct: 725 S 725 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 41/71 (57%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 N + +E ++L +ILEA DG II+ +GII+ N AV LFGY D++ ++F+ Sbjct: 233 NAQDLESANIRLSTILEAAVDGFIIIDTQGIIVQVNPAVGHLFGYDNNDLIGHNVSIFMP 292 Query: 503 QNTPSVMNHYL 513 + + N +L Sbjct: 293 SHERHMQNDFL 303 >gi|327405881|ref|YP_004346719.1| multi-sensor signal transduction histidine kinase [Fluviicola taffensis DSM 16823] gi|327321389|gb|AEA45881.1| multi-sensor signal transduction histidine kinase [Fluviicola taffensis DSM 16823] Length = 1089 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 112/382 (29%), Positives = 182/382 (47%), Gaps = 33/382 (8%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E+ +L + T++GI I N GII N +L+G+ + FLE S+ Sbjct: 443 ELERLSIVASNTNNGITITNAHGIISWINEGFVRLYGWNSSE-------EFLESKGTSIY 495 Query: 510 NHYLTEILSLDLRQTLEK-------ITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTM-- 558 N + + +L +EK I S KE K + I L F L Sbjct: 496 NA--SGLTRAELSSFIEKAVDEKESIIFQSFKELKNQEQKYIQTSLTPVFDEQDELKFLV 553 Query: 559 ---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 DI++ + + K+ AE + FLA VSHEIRTP+ IIG + + +++ Sbjct: 554 YVDTDITDLLEARELAIREKRKAENALKTQELFLANVSHEIRTPMNGIIGLTRQLNDEKL 613 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 E + +D S N +L +VNDLLD+SKI +GKM + SL + ++ + + Sbjct: 614 SHSQQ----EILDTLDSSANGLLHVVNDLLDVSKIRAGKMTFEYVRFSLRDLLNTFATSI 669 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTS 733 + EK++ F +P I+ D + QI LNI+ NAI FT G + + + Sbjct: 670 SYRSEEKKLRFNLEFTEKLPNYIIGDPIRLNQILLNIVGNAIKFTIEGSITLKVYSIEQK 729 Query: 734 N--EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 N E + ++DTG+G+ ++ + + F QI + + GTGLGL +AK++V+A G+ Sbjct: 730 NGMERIHFEIKDTGIGIPTHKQDFVFENFMQIEDHRTRTTSGTGLGLGIAKSLVEALGGE 789 Query: 792 FYIFSTPAKGTLI--EIIFPLY 811 ++FS GT + E+ F L+ Sbjct: 790 IHLFSQEGNGTTVVFELDFELH 811 >gi|149927836|ref|ZP_01916087.1| PAS [Limnobacter sp. MED105] gi|149823458|gb|EDM82689.1| PAS [Limnobacter sp. MED105] Length = 1085 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 135/253 (53%), Gaps = 9/253 (3%) Query: 555 SLTMHDISEWKQEKNKLSHA----KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 S + D ++E +++H + AE S K FLA +SHEIRTP+ AI+G +++ Sbjct: 665 STNITDFKAQQRELERINHVLTDRTQQAEAASKAKGAFLANMSHEIRTPMNAIMGLLQLL 724 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 ++ R +Y + I + +++L+++ND+LDIS++E+ K+ L LD+ +S+ Sbjct: 725 EDTDL----QARQRDYLSKIGSAADVLLNVLNDILDISRVEANKLELSHSRFLLDQVLSK 780 Query: 671 AISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 A L A EK I + S N P L D + QI N+LSNA+ FT G + Sbjct: 781 ATDLFAYRAEEKAIQLYCSKDANCPVSLKGDRLRLAQILNNLLSNALKFTEKGRIHLQVQ 840 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + +++ V+DTG+GM + +PF Q+ +S R G GLGL + K +V+ Sbjct: 841 SVADGKQLQFSVKDTGIGMNEEQCAALFQPFSQVDDSSSRRYGGAGLGLSICKNLVELMG 900 Query: 790 GKFYIFSTPAKGT 802 G+ ++ STP GT Sbjct: 901 GQIWVESTPGLGT 913 >gi|42521923|ref|NP_967303.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39574453|emb|CAE77957.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 1132 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/256 (29%), Positives = 144/256 (56%), Gaps = 6/256 (2%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +T DI+E ++ + L K A K S KS+FLA++SHEIRTP+ AI+G +E++K R Sbjct: 725 VTTQDITELRRVEQSLITTKNEALKASQAKSEFLAQMSHEIRTPMNAIMGMAELLKETRL 784 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + +Y Y ++G +++ ++ND+LD+SKIE+G++++ P + + +++ ++ Sbjct: 785 DV--DQKY--YVTIFCKAGEVLMSLINDILDLSKIEAGEVSIENIPFDMKKLMADVEDMM 840 Query: 676 QLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS 733 + A EK + A + P ++ D ++Q+ +N++ N+I FT G +++I + Sbjct: 841 KPRALEKGLNCICEIAPGVSPHLMGDPTKLRQVLINLIGNSIKFTNKGQVRLVIGKNPSK 900 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + +++ + DTG+G+ + F Q NS + GTGLGL ++K++V+ G+ + Sbjct: 901 KDTLLISITDTGIGIPEDRQHMIFQKFSQADNSVTRKYGGTGLGLAISKSLVELMGGQIW 960 Query: 794 IFSTPAKGTLIEIIFP 809 S P GT P Sbjct: 961 FKSRPGTGTTFFFTIP 976 >gi|254236414|ref|ZP_04929737.1| hypothetical protein PACG_02396 [Pseudomonas aeruginosa C3719] gi|126168345|gb|EAZ53856.1| hypothetical protein PACG_02396 [Pseudomonas aeruginosa C3719] Length = 918 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/257 (31%), Positives = 141/257 (54%), Gaps = 14/257 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL-- 618 I+ K+E + A + A E+ KS FLA++SHEIRTPL ++G +++++ PL Sbjct: 384 INALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDT---PLDR 440 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 G Y+E I SG+ ++ ++ND+LD ++IESGK++L L+E +S+ ++L Sbjct: 441 GQAAYVET---IASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQ 497 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TS 733 A EKR+ + +PR L D ++Q+ +N+LSNA+ FT G + + Sbjct: 498 AVEKRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAE-GHVAVRVQRRFDEGG 556 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +E ++ V D+G+G++ + + F Q +S R G+GLGL +++ +V G+ Sbjct: 557 HERLLYSVSDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIE 616 Query: 794 IFSTPAKGTLIEIIFPL 810 + S P KGT + PL Sbjct: 617 VSSEPGKGTRFSVDLPL 633 >gi|288942572|ref|YP_003444812.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897944|gb|ADC63780.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1705 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/251 (34%), Positives = 134/251 (53%), Gaps = 9/251 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DIS+ K + +L AK++AE+ + KS FLA +SHEIRTP+ AIIG S + Sbjct: 943 TVIDISDRKAAEVELLAAKELAEEATQAKSSFLANMSHEIRTPMNAIIGLSHLALQTEL- 1001 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + R Y + RS +L I+ND+LD SKIE+GK+++ L++ + +LV Sbjct: 1002 ---DARQRNYIEKVHRSAESLLGIINDILDFSKIEAGKLDIEHIAFRLEDVMDNLANLVG 1058 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 L A EK + + +P L D + QI +N+ +NA+ FT GG+I+IS Sbjct: 1059 LKAEEKGVELMFDLPPEVPTALVGDPLRLGQILINLGNNAVKFTEPGGEILISVRVMDQG 1118 Query: 736 EVILR----VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 +R V DTG+GM+ + + +PF Q S + GTGLGL ++ + + G+ Sbjct: 1119 ADWVRLGFSVCDTGIGMSAEQQARLFEPFSQADMSTTRKYGGTGLGLTISTRLTELMGGE 1178 Query: 792 FYIFSTPAKGT 802 + S P G+ Sbjct: 1179 IRVESAPGAGS 1189 >gi|254434207|ref|ZP_05047715.1| response regulator receiver domain protein [Nitrosococcus oceani AFC27] gi|207090540|gb|EDZ67811.1| response regulator receiver domain protein [Nitrosococcus oceani AFC27] Length = 1240 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 87/266 (32%), Positives = 139/266 (52%), Gaps = 10/266 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 TM + E ++++ L A+ A + + K +F A VSHEIRTPL +IG E++KN Sbjct: 247 TMMTVLEAREQE--LEKARDAALESARIKGEFAANVSHEIRTPLNGVIGILELLKNMGL- 303 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 NP+ EY SG +L+++ ++LD S+IESGK L L E + + I L+ Sbjct: 304 ---NPKQREYVQAACNSGETLLELIGNILDFSRIESGKFKLDPINFHLQEILDDVIGLLA 360 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 A K + + +N+P L D ++QI +N+++NA+ FT G I +S Sbjct: 361 AQAQRKELELGYVVLDNVPLSLRGDSARIRQILINLMANAVKFTDRGEVSIEVSLLEKKA 420 Query: 735 EEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 E+++L VRDTG+G+ + + F Q +S + GTGLGL + + +VD G Sbjct: 421 EKLVLHFEVRDTGIGIPVEFRARVFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGGDI 480 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHPHD 818 + S KG++ PL +TS P + Sbjct: 481 GVESGSGKGSIFWFTAPLEETSAPQE 506 >gi|254242148|ref|ZP_04935470.1| hypothetical protein PA2G_02877 [Pseudomonas aeruginosa 2192] gi|126195526|gb|EAZ59589.1| hypothetical protein PA2G_02877 [Pseudomonas aeruginosa 2192] Length = 918 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/257 (31%), Positives = 141/257 (54%), Gaps = 14/257 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL-- 618 I+ K+E + A + A E+ KS FLA++SHEIRTPL ++G +++++ PL Sbjct: 384 INALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDT---PLDR 440 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 G Y+E I SG+ ++ ++ND+LD ++IESGK++L L+E +S+ ++L Sbjct: 441 GQAAYVET---IASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQ 497 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TS 733 A EKR+ + +PR L D ++Q+ +N+LSNA+ FT G + + Sbjct: 498 AVEKRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAE-GHVAVRVQRRFDEGG 556 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +E ++ V D+G+G++ + + F Q +S R G+GLGL +++ +V G+ Sbjct: 557 HERLLYSVSDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIE 616 Query: 794 IFSTPAKGTLIEIIFPL 810 + S P KGT + PL Sbjct: 617 VSSEPGKGTRFSVDLPL 633 >gi|197117615|ref|YP_002138042.1| sensor histidine kinase response regulator lipoprotein [Geobacter bemidjiensis Bem] gi|197086975|gb|ACH38246.1| sensor histidine kinase response regulator lipoprotein, Cache, HAMP, PAS, PAC, PAS and HPT domain-containing protein [Geobacter bemidjiensis Bem] Length = 1229 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 132/508 (25%), Positives = 227/508 (44%), Gaps = 47/508 (9%) Query: 325 TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 +D+ P+ + G + Y NP+F +T Y+ D L P+ P Sbjct: 369 AIDQAPVTVMITDPQGGIEYVNPNFTKVTGYQPED---------ALGRDPREIIGTGCYP 419 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE-----PEDV 438 Y + + H N+ S + + E + P P+ I ED+ Sbjct: 420 EEFYEELWGTLRSGKEWHGEIRNKRKSGELYW---ESVSISPVKSPRGEINNFVGVMEDI 476 Query: 439 DTRINKRKMEIEVM---QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILR 494 R KR E + Q+ +LE+T++ I I+ G N + ++L G+ D +L Sbjct: 477 TQR--KRAEEALIRSDEQIRLLLESTAEAIFGIDLMGNCTFANPSCARLLGHADPDQLLG 534 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR----IIIKKLPF 550 K + + T + + E + + + E G K++ + R ++ + Sbjct: 535 KNMHLLMHHTTSEGKPNPVQECAAYQVLRGGE----GVHKDDDVFWRRDGSSFAVEYWSY 590 Query: 551 SSCYS-------LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 + +T DISE K+ + +L A + AE + KS+FLA +SHEIRTP+ A Sbjct: 591 PQLHDGELVGGVVTFFDISERKRAEAELIRATEAAEAATRAKSEFLANMSHEIRTPMNAA 650 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 +G ++++ Y+E A + ++L ++ND+LD SK+E+G+M L P Sbjct: 651 LGMLYLLQHTELSET-QKSYLEKAQT---ASGVLLGVINDILDFSKVEAGRMVLETTPFR 706 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG 722 + +S+ ++ Q EK I T +IP ++ D + Q+ LN+ SNAI FT G Sbjct: 707 MAAVLSDLQTVAQATLREKPIEFVTRCGADIPEQLFGDPLRLGQVLLNLASNAIKFTEKG 766 Query: 723 G-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 ++ ++ EV LR V DTG+GMT + E PF Q +S + GTGLGL Sbjct: 767 KVEVEVALLAQEQGEVTLRFSVADTGIGMTTEQQESVFTPFTQADSSTTRKYGGTGLGLA 826 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEII 807 +++ +V G+ ++ S P +G+ I Sbjct: 827 ISRELVQLMGGRMWVVSEPGRGSTFSFI 854 >gi|329849064|ref|ZP_08264092.1| sensory box protein [Asticcacaulis biprosthecum C19] gi|328844127|gb|EGF93696.1| sensory box protein [Asticcacaulis biprosthecum C19] Length = 703 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 83/243 (34%), Positives = 134/243 (55%), Gaps = 5/243 (2%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L+ A++ AE+ S K++FLA +SHEIRTP+ AIIG ++ + PL R E+ Sbjct: 318 RELTQARRKAEEASLAKTEFLANMSHEIRTPMNAIIGIGTLLAMSQ--PL-TARQQEFVK 374 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 ++ S +L+++NDLLD++KIE+ + L P SL++ + E S++ + + EK + T Sbjct: 375 TLNVSAKGLLELINDLLDVAKIEAHTVELEEVPFSLEQILLEVASMMTVRSREKGLTFTT 434 Query: 689 SFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 + + R A D ++QI LN+ SNA+ FT +GG + I + + V + VRDTG+G Sbjct: 435 AIDSIRGRTFAGDPMRLRQIVLNLCSNAVKFTQTGG-VEIRVACGAEDSVAISVRDTGIG 493 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + L F Q NS + GTGLGL + + + + G I S P G+ + Sbjct: 494 IAPENLSTIFDKFVQADNSISRKYGGTGLGLAITRNLAELMGGAIAIDSQPGHGSTFTVT 553 Query: 808 FPL 810 PL Sbjct: 554 LPL 556 >gi|295106297|emb|CBL03840.1| Signal transduction histidine kinase [Gordonibacter pamelaeae 7-10-1-b] Length = 554 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 137/247 (55%), Gaps = 3/247 (1%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++++ +L A E+ +KS+FLA +SHE+RTPLT+II F+E++ N+ P + + Sbjct: 304 ERQRAQLEEANGRLRDENRYKSEFLAMMSHELRTPLTSIIAFTELL-NRNSEP-ADEKEA 361 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E I+ + +L ++ND+L++S++++G++ ++ E V L + ++VQ AN K I Sbjct: 362 ETRREIEANSRALLLMINDILEMSRLDAGRIEMNRETVDLGDIAGMVQAVVQPLANRKGI 421 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-HTSNEEVILRVRD 743 ++P + AD ++ + N+ NA+ FTP GG + +S + H +V LRV D Sbjct: 422 AFACEIDPDVPLVTADFEKLRHVLENLCGNAVKFTPEGGDVRLSISWHPECGQVWLRVAD 481 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ + + F Q +S R GTGLGL LAK + + G + S G++ Sbjct: 482 TGIGIAKKDQRRIFDRFVQADSSASRRYNGTGLGLSLAKEYAEMHGGTISVESELGHGSV 541 Query: 804 IEIIFPL 810 + P+ Sbjct: 542 FTVRIPV 548 >gi|91774051|ref|YP_566743.1| multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91713066|gb|ABE52993.1| bvgS precursor-like multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 682 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 108/377 (28%), Positives = 190/377 (50%), Gaps = 31/377 (8%) Query: 442 INKRKMEIEVMQ--LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 I KR EI + ++E ++DGI I+ I+ + N +++ GY + +++ Sbjct: 298 IQKRADEINQAEEKYSVLVEESNDGIIIVQNYLIVFA-NLKFAEMLGYEKDRLIK----- 351 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII---KKLPFSSCYSL 556 +++N+ + L ++ E++ G ++ E+ + +P SL Sbjct: 352 -------TLLNNCINNALKNEVITRYEQLIQGRSETEQQYETNFFSHNGENIPVEINSSL 404 Query: 557 T-----------MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 M DI++ KQ++ L ++++ AE + K+ FLA +SH++RTPL AIIG Sbjct: 405 IHYRGNRAVMYIMRDITKRKQQEQDLLNSRQSAEVANHSKNTFLASMSHDLRTPLNAIIG 464 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 +S+++ + G L N + I+Y N I SG L+L+I+ND+L+ISKIE+GKM L + Sbjct: 465 YSDLLLTESVGDL-NEKQIKYTNNILISGRLLLNIINDILNISKIEAGKMQLRPSENDIQ 523 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 E + E LV+ + + + N I +I AD + I N++ NAI +P +I Sbjct: 524 EILKEVNELVKTKVQISKNELIFNIENGIEKIYADRIKIISILQNLVDNAIKHSPKNEKI 583 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 I+ T T ++ + + V++ G G+T ++ PF Q+ GTGLGL + K V Sbjct: 584 FINIT-TKDKNLQICVKNKGKGITQEMQKEIFTPFVQVEKFISKEYRGTGLGLAIVKHYV 642 Query: 786 DANMGKFYIFSTPAKGT 802 + GK +I S + T Sbjct: 643 HLHNGKIWIESVLGEET 659 >gi|170747176|ref|YP_001753436.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170653698|gb|ACB22753.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 862 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 103/389 (26%), Positives = 189/389 (48%), Gaps = 16/389 (4%) Query: 429 PQNGIEP--EDVDTRINKRKMEIEVMQL-CSILEATSDGIAIINREGIILSTNRAVSKLF 485 PQ G+ +DV R+N + +L L+ ++ +A+ +G + NRA ++ Sbjct: 436 PQGGLTYLFDDVSDRLNAESRYNALRRLQAETLDTLAEPVAVFGADGRLSLANRAFFTVW 495 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL-----LS 540 E + +P ++ + E LD+R + + + + +L Sbjct: 496 RLDPEMVEERPH---VDAVIAACRALAPAEEPWLDIRDAVVGLEARTARTCRLEVVDGTV 552 Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 L + LP + LT+ D++ + L+ EK + + F+ VS+E+R+PL Sbjct: 553 LDCAAQPLPEGATL-LTLIDVTASVNVERALTEKNDALEKAAQLRDTFVHHVSYELRSPL 611 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 T IIGF++++ ++ G L N R EYA++I RS +L I+ND+LD++ I++G + L E Sbjct: 612 TNIIGFTQLLGDETVGAL-NERQREYADHIMRSSAALLVIINDILDLASIDAGSLELQRE 670 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 V + V A+ ++ E I + +I + AD + V+QI N+LSNA+ F+ Sbjct: 671 EVDVQATVEAAVRGIEDRLAESHITLALDVPEDIGSVHADGKRVRQILFNLLSNAVGFSD 730 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 +G ++ + T+ +E++L VRD G GM + F ++ R G GLGL + Sbjct: 731 AGQRVEVQARRTA-QELLLSVRDHGRGMPPEIADSVFNRFES--HTLGTRHRGVGLGLSI 787 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ V+ + G+ + + P GT + FP Sbjct: 788 VRSFVELHGGRVLLETAPGSGTRVTCTFP 816 >gi|219849075|ref|YP_002463508.1| histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543334|gb|ACL25072.1| histidine kinase [Chloroflexus aggregans DSM 9485] Length = 482 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 133/228 (58%), Gaps = 5/228 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKN--QRFGPLG-NPRYIEYANYIDRSGNLVLDIV 641 KS+F+A +SHE+RTPL IIGFS + + +G + + + ++ I RSG +L ++ Sbjct: 245 KSNFMATMSHELRTPLNIIIGFSTAMIEHPEMYGDVKIDEQVLQDIAEIRRSGQHLLGLI 304 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 ND+LD++KIE+GK+ L+ ++L + E I Q ++ I +R + +++P +LAD Sbjct: 305 NDILDLAKIEAGKLELNRTNLALPPLLDETIRTAQALIGDRPIQLRREYHDSLPTVLADE 364 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 ++Q+ LN++SNA FT G I ++V+L VRDTG+G+ + E+ + F Sbjct: 365 VRIRQVLLNLVSNACKFTHMGE--IAVGARAETDQVVLWVRDTGIGIAPADQERIFQQFE 422 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q+ N+ GTGLGL + + +++ + G+ ++ S KG++ P Sbjct: 423 QVENADTRHHAGTGLGLSICRWLIELHGGRMWLESEVGKGSIFFFSLP 470 >gi|302185632|ref|ZP_07262305.1| PAS [Pseudomonas syringae pv. syringae 642] Length = 1165 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 110/366 (30%), Positives = 187/366 (51%), Gaps = 25/366 (6%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL-- 513 +++E T I + +REG++ N + K+F EDI+ K T N + Sbjct: 542 ALVEGTPHPIYVRDREGMLRMCNDSYLKVFSAQREDIIGKSATEGGLGNAFEAREYAADY 601 Query: 514 TEILSLDLRQTLEK-ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH------DISEWKQ 566 +++ D L++ + +G E+ L++ I LPF DISE +Q Sbjct: 602 QRVMASDTALILDRPLHIG----ERELTIYHWI--LPFRDSLGEVQGIIGGWIDISERRQ 655 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPLGNPRYIE 625 L AK+ A+ S KS FLA +SHEIRTP+ A+IG E+ +K G L + IE Sbjct: 656 LIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRAEHGEL-DRSAIE 714 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A S N +LD++ D+LDI++IESG+++L+ E +L V + + A +K + Sbjct: 715 VAY---SSANDLLDLIGDILDIARIESGRLSLNPERANLRRLVESVLRVFDGLARQKDLE 771 Query: 686 IRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI---LR 740 + + I +L D KQI N++SNAI FTP G ++++ + + +++ + Sbjct: 772 LVLELDSRINADVLIDPLRFKQILSNLVSNAIKFTPMGRIKVVLQAAESPDPQLLHLHIT 831 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+D+G+G++ + ++ +PF Q N+ Q+ G GLGL + +++ G + STP Sbjct: 832 VQDSGIGISVEDQQRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMMGGNLSLDSTPGH 891 Query: 801 GTLIEI 806 GT I + Sbjct: 892 GTRISM 897 >gi|186684333|ref|YP_001867529.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186466785|gb|ACC82586.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1105 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 96/352 (27%), Positives = 183/352 (51%), Gaps = 18/352 (5%) Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP----SVMNHYLTEILSLDLRQTLEK-- 527 I N A ++ GY E++L V +Q TP ++ + ++L++ + EK Sbjct: 620 ITEANEAFLEMVGYTREELLAG--KVRRKQMTPPEYHALDEQGIEQLLTVGVCNPFEKEY 677 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 I ++ L+ ++ K P C+ L D++ KQ + L + ++ + +K + Sbjct: 678 IRKDGSRIPILIGGALVEKDPPSWICFIL---DLTPRKQLEQTLRQQTEELKQANQNKDE 734 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHE+R+PL I+G+S ++K+++F R +E I+R+ L + ++++LLD+ Sbjct: 735 FLAILSHELRSPLNPILGWSSLLKSRKFDEATTNRALET---IERNTQLQIKLIDELLDV 791 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707 S+I GK+NL F V+L + A+ V+L A K I I+ N+ ++ D ++Q+ Sbjct: 792 SRIIRGKLNLTFATVNLASVIDAALETVRLIAESKSIQIKIQLDPNVGKVSGDYYRLQQV 851 Query: 708 ALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 N+LSNA+ FTP G + +S + + ++ +++V+DTG G++ L + F Q Sbjct: 852 VGNLLSNAVKFTPPNGSVEVSLSSSGELASHSALIQVKDTGQGISPEFLPHVFEYFRQAD 911 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTSH 815 +S+ + G GLGL + + +V+ + G S +G + + P+ S Sbjct: 912 SSRTRKFGGLGLGLAIVRNLVELHGGTVTAASPGEGQGAIFTVRLPVMKESR 963 >gi|262275736|ref|ZP_06053545.1| hypothetical protein VHA_002719 [Grimontia hollisae CIP 101886] gi|262219544|gb|EEY70860.1| hypothetical protein VHA_002719 [Grimontia hollisae CIP 101886] Length = 690 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/269 (31%), Positives = 144/269 (53%), Gaps = 11/269 (4%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ K ++L A++ AE ++ KS FLA +SHEIRTPL A++G + ++ Sbjct: 302 TAKDITGRKHRVHELQQARQQAESANAAKSQFLAMMSHEIRTPLNAVMGLLDALQQ---- 357 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L + + + + +D+S L+L I+ND+ D+S+IES + +LH E V++ ++V+ + ++ Sbjct: 358 SLLDDEQVAWVSQMDKSAQLLLTIINDVFDLSRIESERFSLHPELVNIRDSVTIVFNQLR 417 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 ++ K I + A+N+P I D QI LN++ NA+ FT G++ ++ + +N Sbjct: 418 ETSSHKAIKLEMDIADNVPDNIYQDGNRFTQILLNLVGNAVKFTEE-GRVDVAMSAVNN- 475 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + + V DTG+G+ + +PF Q S + GTGLGL + K +V G Sbjct: 476 RLKISVSDTGIGINAERRKDIFQPFTQADGSITRQYGGTGLGLSICKKLVSMMNGSIDFE 535 Query: 796 STPAKGTLIEIIFPLYDTSHPH----DCI 820 S P GT I PL + DCI Sbjct: 536 SKPGVGTTFFIDIPLTEPPQSEQVKTDCI 564 >gi|226939943|ref|YP_002795016.1| Sensor protein [Laribacter hongkongensis HLHK9] gi|226714869|gb|ACO74007.1| Sensor protein [Laribacter hongkongensis HLHK9] Length = 1205 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 90/265 (33%), Positives = 136/265 (51%), Gaps = 26/265 (9%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS------EVI 610 T+ DI K + + AK+ AE+ S KSDFLA +SHEIRTP+ I+G + E+ Sbjct: 536 TLADIEARKASEAAILSAKEAAEEASRAKSDFLANMSHEIRTPMNGILGMTRLCLATELS 595 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + QR EY + +D S L+L ++ND+LD SKIE+GK+ L SL E V + Sbjct: 596 EEQR----------EYLDMVDSSAQLLLTVINDILDFSKIEAGKLELSATDFSLRELVRD 645 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLR-----SVKQIALNILSNAIHFTPSGGQI 725 + + L A EK + I +IP LAD R ++Q+ N+L NA+ FT G++ Sbjct: 646 TLQPLALKAGEKGLEILC----DIPPSLADSRHADATRLRQVLGNLLGNAVKFTEV-GEV 700 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + ++ + VRDTG+G++ L + + F Q +S R GTGLGL ++ +V Sbjct: 701 ELQVREQADGLLRFSVRDTGIGISREGLAQVFESFSQADSSISRRYGGTGLGLTISSRLV 760 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810 G + S G+ PL Sbjct: 761 GMMGGTLQVESEAGLGSCFHFAVPL 785 >gi|159899963|ref|YP_001546210.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893002|gb|ABX06082.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 791 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 89/264 (33%), Positives = 143/264 (54%), Gaps = 9/264 (3%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 F++ I +Q K+ + +AE+ + KS+FLA +SHE+RTPL AIIG+SE+ Sbjct: 254 FNTMAQTIRGQIERLEQAKDHAQRLQFVAEEANRAKSNFLANMSHELRTPLNAIIGYSEI 313 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 ++ + LG IE + I SG +L ++ND+LD++KIESGK+ + E +SL + + Sbjct: 314 LQEE-CEDLGQTAMIEDLDRIRLSGRHLLTLINDILDLAKIESGKVEILPEEISLPQLLH 372 Query: 670 EAISLV--QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 + S V + NE R++I + A + +++D ++QI +N+LSNA FT G I Sbjct: 373 DVRSTVDPMIIKNENRLVIES--AAGLLTMISDETRLRQILVNLLSNAAKFTEHGR--IT 428 Query: 728 STTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 S EE + V D G+GM+N +L + +PF Q S + GTGLGL L++ + Sbjct: 429 LRVQPSEEEGWIDFSVHDNGIGMSNAQLSRLFQPFTQADASTTRKYGGTGLGLALSRRLA 488 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 G + S G+ + P Sbjct: 489 QLLGGDIRVQSELGVGSTFSVHLP 512 >gi|146281817|ref|YP_001171970.1| sensor/response regulator hybrid protein [Pseudomonas stutzeri A1501] gi|145570022|gb|ABP79128.1| probable sensor/response regulator hybrid protein [Pseudomonas stutzeri A1501] Length = 914 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/260 (33%), Positives = 141/260 (54%), Gaps = 8/260 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+E + A + A E+ KS FLA++SHEIRTPL ++G ++++ PL + Sbjct: 389 KEEGYRSREAAERAASENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRET---PLDRSQQF 445 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 Y + I SGN ++ ++ND+LD ++I SGK++L L+ +SE I L A EK++ Sbjct: 446 -YLDTISSSGNSLMAVINDILDYARIGSGKLSLEDIDFDLEILISETIRLFTAQALEKQL 504 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEE--VILR 740 + +P RI D +KQI +N+LSNA+ FT G ++ +S T + E ++ Sbjct: 505 SLHVGLEPGVPRRIRGDPTRLKQILMNLLSNALKFTEHGHVVLEVSCRRTQDGEPRLVFC 564 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D+G+GM L + + F Q +S R G+GLGL ++K +V+ G + STP + Sbjct: 565 VSDSGIGMRQEVLAQLFESFAQGDSSTTRRYGGSGLGLAISKELVEMMNGHIEVQSTPGR 624 Query: 801 GTLIEIIFPLYDTSHPHDCI 820 G+ PL+ + D + Sbjct: 625 GSRFCFEIPLHAATDGEDSL 644 >gi|256829214|ref|YP_003157942.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578390|gb|ACU89526.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 676 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 104/362 (28%), Positives = 173/362 (47%), Gaps = 20/362 (5%) Query: 457 ILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRK---PFTVFLEQNTPSVMNHY 512 + E +DGI ++ REG I N A K+FGY V++IL K +FLE + ++ Sbjct: 177 LFETANDGIVLLEKREGTITHANPAFEKMFGYNVKEILGKHLEDIGIFLENSDFQIIMQK 236 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 L + ++ S K L + I + +S + D+++ K L Sbjct: 237 LRDTGVINYDDV-------SIKTNFNLDIDTDIYLVDRASLVQCNIRDMTQNKINLKSLI 289 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A K AE + KS+FLA +SHEIRTPL I+G +++ G N +YIE A Sbjct: 290 RATKQAEIANIAKSEFLANMSHEIRTPLNGIMGMIQLLDGTPVGADQN-KYIELALT--- 345 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 S N + +++D+LD+S+IE+G M +H + + + L + + K + ++ Sbjct: 346 SCNRLTRLLSDILDLSRIEAGMMEIHESKFRFADLRNSILGLFAVESLTKAVTLKCIIDP 405 Query: 693 NI-PRILADLRSVKQIALNILSNAIHFTPSGGQII----ISTTHTSNEEVILRVRDTGVG 747 I P ++ D V QI N++ N + FT G + + + ++ V+ V DTG+G Sbjct: 406 TIHPEVIGDEGRVLQILFNLVGNGLKFTKEGSVTVEITPLGSEKNNDYRVLFTVSDTGIG 465 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + L+ KPF QI S + +G GLGL + K +V G + S +GT + ++ Sbjct: 466 IHEDHLKNLFKPFVQIEKSYTRKYQGAGLGLSIVKKLVHLMGGSIEVDSVVGEGTSMNVV 525 Query: 808 FP 809 P Sbjct: 526 LP 527 >gi|309791141|ref|ZP_07685674.1| Signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308226839|gb|EFO80534.1| Signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 499 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 112/370 (30%), Positives = 187/370 (50%), Gaps = 26/370 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +I+E DGI II+ I + N A ++FGY ++I+ P + P + H + Sbjct: 125 AIVEYAVDGIMIIDEHDRITTFNPAAERMFGYRADEIIGHPIAHLI----PDPL-HRQYK 179 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSH 573 ++SL ++I +G K+ + I ++ ++ Y L + D + KQ + +L Sbjct: 180 LISLG-----DEI-IGRHKDTHSFPMDISSGQIILNNKRLYVLILRDATRRKQVEEELER 233 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY-ANYIDR 632 A+ AE S KS FLA +SHE+RTPL AIIG+SE++ +E I R Sbjct: 234 ARDAAEAASRAKSTFLANMSHELRTPLNAIIGYSELLIEDAVD--AQEEDLESDLRRIHR 291 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 +G +L +++D+LDISKIE+GKM+L +E +L +S+ V A+++ T ++ Sbjct: 292 AGTHLLGLISDILDISKIEAGKMDLRYEYFALPPMLSDVDLTVAPLASQRGNRYITQYSG 351 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGG---QIII-----STTH--TSNEEVILRVR 742 I AD V+QI +N+L NA FT +G +I I + H ++ ++ V Sbjct: 352 QPGSIYADPVRVRQILINLLGNACKFTENGTISLRIAIEGDDYAAGHDKSTGNAILFEVT 411 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+GM+ ++ + +PF Q +S + GTGLGL L + G + S +G+ Sbjct: 412 DTGIGMSEDQMARLFQPFTQADDSTTRKYGGTGLGLALTRYFCQMMGGTVDVVSRLGQGS 471 Query: 803 LIEIIFPLYD 812 + P+ D Sbjct: 472 TFMVRLPMRD 481 >gi|294495286|ref|YP_003541779.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292666285|gb|ADE36134.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 510 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 113/448 (25%), Positives = 218/448 (48%), Gaps = 41/448 (9%) Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 +M ++DR CI A+ + E A+ F + + ++ TRIN Sbjct: 80 IMFTKTDRECIRAALK-------------------EDADDFITDKSDDL----EILTRIN 116 Query: 444 K--------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-R 494 K+ E Q + ++ I +++R+ ++ N+ S++ GYP E+I+ + Sbjct: 117 SLLQIKTLYDKLAKERDQAQTYIDVAQTLIGVVDRDLKVVLANKKSSEVLGYPQEEIIGQ 176 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLR--QTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 K F VFL + ++ +L ++ + EK L T EE+L+ ++ K Sbjct: 177 KWFDVFLPERIRDMIKTGYNMVLEGEIEPPEFSEKPILTRTGEERLVFWHDVVLKDDQGG 236 Query: 553 CYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + DI+E KQ + L A K ++ +++FLA +S E++ PL +I GFS ++ Sbjct: 237 IMGTISSGEDITEKKQAEMALVEANKELQELDKMRNEFLANISKELQMPLASIKGFSNLL 296 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +G + N + + I R+ + + VN LL S+ S + +FE ++ +++ Sbjct: 297 ARGEYGEI-NSKQRDALLTITRNCDRLQKHVNVLLYASEDCSQNVIYYFEATDINSLLNK 355 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + +++ + + + + +IP++ AD +K + IL NAI FTP+ G+I +ST+ Sbjct: 356 TLDELKINFAKYNLTLEINL-EDIPQVNADETQLKNVIFQILDNAIKFTPANGKIKVSTS 414 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 T + V +++RD+G+G+ ++E K F Q+ S + + GTG+GL + K +V+ + G Sbjct: 415 RTG-KYVEMKIRDSGIGIAKDKVENIFKSFYQVDGSTRRKYGGTGIGLYICKKIVEGHKG 473 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 K + S KG+ + P+ + P D Sbjct: 474 KILVESVKGKGSEFTVQLPI--RTQPDD 499 >gi|192361523|ref|YP_001983038.1| GacS [Cellvibrio japonicus Ueda107] gi|190687688|gb|ACE85366.1| GacS [Cellvibrio japonicus Ueda107] Length = 974 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/237 (34%), Positives = 129/237 (54%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA SHEIRTPL I+GF + N + EY Sbjct: 298 ELDMARKEALEASRVKSEFLANTSHEIRTPLNGILGFINLALKTEL----NEKQREYMET 353 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I S +L ++N +LD SKIESGK+ L + P+ + + V E + ++ A+EK + + T Sbjct: 354 IRDSAQNLLTVINGILDFSKIESGKLTLDYAPLPIRKTVDEVLHMLAPDAHEKNLQLITY 413 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILRVR--DTG 745 IPR +L D KQ+ N+++NAI ++ +G I+ IS ++ L+V D G Sbjct: 414 IEPCIPRNLLGDALRFKQVLSNLVTNAIKYSDAGNIIVDISIAQRQETQITLKVAVTDQG 473 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++ E E F Q+ +S +GTGLGL + K +V+ G+ + S P +G+ Sbjct: 474 IGLSQEEQENLFSAFSQVDSSSSREHDGTGLGLAICKGLVERMHGEIGVVSAPEQGS 530 >gi|56964475|ref|YP_176206.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16] gi|56910718|dbj|BAD65245.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16] Length = 590 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 100/367 (27%), Positives = 182/367 (49%), Gaps = 24/367 (6%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT-VFLEQ 503 R+ + + ++ ++++ + +N G ++ N+ ++F D L KP+ VF Q Sbjct: 239 RRHQAQQDRMAALIDHMGSALLFMNVRGDVVLLNQTTEQVFEVDSSDWLSKPYYHVFPSQ 298 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 P + L + R +E ST+ + ++ +L MHDI+E Sbjct: 299 --PLIQFVQLVYMTEKKQRSLIEWTKHFSTRVYDVYGAPVMADSGRLRGV-TLVMHDITE 355 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K KL +K DF+A VSHE++TP+T+I GF+E + + G + +P Sbjct: 356 QK----KLEQVRK----------DFVANVSHELKTPVTSIKGFAETLLD---GAIDDPVL 398 Query: 624 I-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 ++ I + + + ++ DLL++SKIE+ + L E +SL + + LV+ A EK Sbjct: 399 SKQFTEIIWKESDRLQMLIVDLLELSKIENAQFKLDLEDMSLKDITEDVFELVRGKAEEK 458 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + + + I D + +KQ+ LN++SNAI +TPSGG + ++ + V+L+V+ Sbjct: 459 GMHLHIQEQGS-SVIEGDWQRLKQVVLNLVSNAISYTPSGGHVTVALKE-QKDAVVLKVQ 516 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ E + + F ++ ++ GTGLGL + K + +A+ K + S KGT Sbjct: 517 DTGIGIDPKETLRIFERFYRVDRARSRNSGGTGLGLAIVKHLAEAHHAKIEVQSEEGKGT 576 Query: 803 LIEIIFP 809 + FP Sbjct: 577 EFSLTFP 583 >gi|294624495|ref|ZP_06703177.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601208|gb|EFF45263.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 1364 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 105/379 (27%), Positives = 178/379 (46%), Gaps = 29/379 (7%) Query: 464 GIAIINRE--GIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLD 520 G AII + G + N A KL GY +++ R+ + F+E H L E Sbjct: 503 GYAIIATDSGGFVTLFNPAAEKLLGYSAAEVIGRRKASQFVEPEELQERAHMLAEQTGTP 562 Query: 521 LRQTLEKI----TLGSTKEEKLLSLRIIIKKLP----FSSC---------YSLTMHDISE 563 + TLE I +LG + + + ++LP S+ Y D++E Sbjct: 563 VAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAVDLTE 622 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K + +L A A+ + KSDFLA +SHEIRTP+ AI+G +++ Sbjct: 623 QKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQ--- 679 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + IDRS +L+I+ND+LD SKIE+G+++L P L++ L++ + K Sbjct: 680 -DMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRSSLSAKP 738 Query: 684 I-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVI 738 + +I + +L D + Q+ +N++ NAI FT G ++ S + +++ Sbjct: 739 VEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKFKLL 798 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 VRDTG+G++ + PF Q S R G+GLGL +++ +V+ G+ + S P Sbjct: 799 FSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGELEVESVP 858 Query: 799 AKGTLIEIIFPLYDTSHPH 817 +G+ + L +S P Sbjct: 859 GRGSEFYFVVTLEKSSPPQ 877 >gi|238920900|ref|YP_002934415.1| hybrid sensory histidine kinase BarA [Edwardsiella ictaluri 93-146] gi|238870469|gb|ACR70180.1| signal transduction histidine-protein kinase BarA [Edwardsiella ictaluri 93-146] Length = 918 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 84/238 (35%), Positives = 139/238 (58%), Gaps = 10/238 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +V+K PL + I+Y + Sbjct: 273 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQVMKT----PLSATQ-IDYLH 327 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS N +L I+ND+LD SK+E+GK+ L P L E + E +L+ A++K + + Sbjct: 328 TIERSANNLLTIINDVLDFSKLEAGKLVLEHIPFMLRETIDEVATLLAPSAHDKGLELTL 387 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDT 744 + N++P +L D ++Q+ N+L NAI FT G +I + + + E+ ++V DT Sbjct: 388 NVHNDVPEHVLGDPMRLQQVLTNLLGNAIKFTEKGNIDIRIELRSQTSQAVELEIQVHDT 447 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G++ + + + F Q S R GTGLGL + + +++ G S P KG+ Sbjct: 448 GIGISERQQSQLFQAFRQADASITRRHGGTGLGLVITQKLINEMGGDIAFHSQPHKGS 505 >gi|294665893|ref|ZP_06731160.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604348|gb|EFF47732.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 1364 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 105/379 (27%), Positives = 178/379 (46%), Gaps = 29/379 (7%) Query: 464 GIAIINRE--GIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLD 520 G AII + G + N A KL GY +++ R+ + F+E H L E Sbjct: 503 GYAIIATDSGGFVTLFNPAAEKLLGYSAAEVIGRRKASQFVEPEELQERAHMLAEQTGTP 562 Query: 521 LRQTLEKI----TLGSTKEEKLLSLRIIIKKLP----FSSC---------YSLTMHDISE 563 + TLE I +LG + + + ++LP S+ Y D++E Sbjct: 563 VAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAVDLTE 622 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K + +L A A+ + KSDFLA +SHEIRTP+ AI+G +++ Sbjct: 623 QKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQ--- 679 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + IDRS +L+I+ND+LD SKIE+G+++L P L++ L++ + K Sbjct: 680 -DMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRSSLSAKP 738 Query: 684 I-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVI 738 + +I + +L D + Q+ +N++ NAI FT G ++ S + +++ Sbjct: 739 VEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKFKLL 798 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 VRDTG+G++ + PF Q S R G+GLGL +++ +V+ G+ + S P Sbjct: 799 FSVRDTGIGISKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGELEVESVP 858 Query: 799 AKGTLIEIIFPLYDTSHPH 817 +G+ + L +S P Sbjct: 859 GRGSEFYFVVTLEKSSPPQ 877 >gi|319786375|ref|YP_004145850.1| histidine kinase [Pseudoxanthomonas suwonensis 11-1] gi|317464887|gb|ADV26619.1| histidine kinase [Pseudoxanthomonas suwonensis 11-1] Length = 1187 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 81/249 (32%), Positives = 136/249 (54%), Gaps = 13/249 (5%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S KS FLA + HE+RTP+T ++G SE++ + + R Y I R Sbjct: 809 HKRELAEQASMAKSRFLATLGHEVRTPMTGVLGMSELLLDTSL----DSRQRSYVESIRR 864 Query: 633 SGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 +G+ +L +VND LD+++IE+GK+ L F+PV+L E V+ L+ A ++ + Sbjct: 865 AGDHLLRLVNDALDLARIEAGKLELDSQDFDPVALAEEVA---GLMAPVAEQRGLAFHLR 921 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 A +P + D V+QI LN+L NA+ FT G++++ S E ++ VRDTG G+ Sbjct: 922 VAPEMPAAVRGDPGRVRQILLNLLGNAVKFTDR-GEVVLELGTVSPEGLVFVVRDTGPGL 980 Query: 749 TNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + + + F Q ++ R G+GLGL + + + A G+ + ST GT + Sbjct: 981 SEEQKARLFRRFEQADGARTTSRYGGSGLGLAICQELAVAMGGRIEVDSTLGHGTAFRVQ 1040 Query: 808 FPLYDTSHP 816 PL + P Sbjct: 1041 LPLPTAAAP 1049 >gi|313108820|ref|ZP_07794805.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa 39016] gi|310881307|gb|EFQ39901.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa 39016] Length = 918 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/257 (31%), Positives = 140/257 (54%), Gaps = 14/257 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL-- 618 I+ K+E + A + A E+ KS FLA++SHEIRTPL ++G +++++ PL Sbjct: 384 INALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDT---PLDR 440 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 G Y+E I SG+ ++ ++ND+LD ++IESGK++L L+E +S+ ++L Sbjct: 441 GQAAYVET---IASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQ 497 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TS 733 A EKR+ + +PR L D ++Q+ +N+LSNA+ FT G + + Sbjct: 498 AVEKRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAE-GHVAVRVQRRFDEGG 556 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E ++ V D+G+G++ + + F Q +S R G+GLGL +++ +V G+ Sbjct: 557 RERLLYSVSDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIE 616 Query: 794 IFSTPAKGTLIEIIFPL 810 + S P KGT + PL Sbjct: 617 VSSEPGKGTRFSVDLPL 633 >gi|77164777|ref|YP_343302.1| hybrid signal transduction histidine kinase and diguanylate cyclase/phosphodiesterase [Nitrosococcus oceani ATCC 19707] gi|76883091|gb|ABA57772.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nitrosococcus oceani ATCC 19707] Length = 1499 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 87/266 (32%), Positives = 139/266 (52%), Gaps = 10/266 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 TM + E ++++ L A+ A + + K +F A VSHEIRTPL +IG E++KN Sbjct: 247 TMMTVLEAREQE--LEKARDAALESARIKGEFAANVSHEIRTPLNGVIGILELLKNMGL- 303 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 NP+ EY SG +L+++ ++LD S+IESGK L L E + + I L+ Sbjct: 304 ---NPKQREYVQAACNSGETLLELIGNILDFSRIESGKFKLDPINFHLQEILDDVIGLLA 360 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 A K + + +N+P L D ++QI +N+++NA+ FT G I +S Sbjct: 361 AQAQRKELELGYVVLDNVPLSLRGDSARIRQILINLMANAVKFTDRGEVSIEVSLLEKKA 420 Query: 735 EEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 E+++L VRDTG+G+ + + F Q +S + GTGLGL + + +VD G Sbjct: 421 EKLVLHFEVRDTGIGIPVEFRARVFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGGDI 480 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHPHD 818 + S KG++ PL +TS P + Sbjct: 481 GVESGSGKGSIFWFTAPLEETSAPQE 506 >gi|85059258|ref|YP_454960.1| putative two-component sensor kinase [Sodalis glossinidius str. 'morsitans'] gi|84779778|dbj|BAE74555.1| putative two-component sensor kinase [Sodalis glossinidius str. 'morsitans'] Length = 927 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 83/253 (32%), Positives = 131/253 (51%), Gaps = 11/253 (4%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L+ AK+ AE+ + KS L +SHE+RTPL+ +G E+++ + + Sbjct: 380 ERTRALNEAKQQAERANKRKSSHLTTISHELRTPLSGSLGALELLQMTTL----TDKQFQ 435 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A+ + +L I+N+LLD S+IESG+++LH E L + +A+ +Q K + Sbjct: 436 LADTARQCVFSLLSIINNLLDFSRIESGQLSLHIEETPLLPILDQAMHTIQGPGQSKGLT 495 Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 +RT +P L D ++QI +N+L NA+ FT SGG I + ++++I V D+ Sbjct: 496 LRTFVGKQVPLYLDIDGMRLRQILVNLLGNALKFTQSGG--IFLSVKRRDQQLIFAVNDS 553 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G G+ + EK PF Q + Q GTGLGL +A + G + STP GT + Sbjct: 554 GQGIAPEDQEKVFAPFFQSEGTMQ----GTGLGLAIAANLAKLMGGSLTLSSTPGLGTCM 609 Query: 805 EIIFPLYDTSHPH 817 I PL D PH Sbjct: 610 SFIMPLNDHREPH 622 >gi|300866839|ref|ZP_07111516.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300335149|emb|CBN56676.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 1317 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 116/399 (29%), Positives = 196/399 (49%), Gaps = 41/399 (10%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +++ E + QL +I+E++ D I + +G+I S N ++FGY +I+ + T + Sbjct: 685 RQQTEAAISQLAAIVESSEDAIIGKSLDGVIESWNAGAERMFGYTALEIVGQSITKLIPP 744 Query: 504 NTPSVMNHYLTEIL---SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 N LT I S+ +T+ + G+ + S+ +I K S + D Sbjct: 745 NYVDEEAQILTIIRQEKSIPHYETVRQRKDGTLVNVSV-SISLIKNKKGAIIGASKIVRD 803 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 IS+ K+ + +L A + AE + KS FLA +SHE+RTPL AI+GF++V+ P Sbjct: 804 ISDRKRREIELWQAMEAAESANLAKSTFLANMSHELRTPLNAILGFTQVMAR---NPALT 860 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P E I RSG+ +L ++ND+LD+SKIE+G L L + +++ N Sbjct: 861 PELKEDLQTIGRSGDYLLSLINDILDLSKIEAGHSTLEETGFDLIALLHSLQNMLAERVN 920 Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K++ + A N+P+ ILAD + ++Q+ LN+LSN++ FT G T +EE L Sbjct: 921 SKKLQLYFDVAPNLPQFILADSQKLRQVLLNLLSNSLKFTDLG----YITLRVRSEESSL 976 Query: 740 RVR----------------------------DTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 VR DTGVG++ EL+ F Q ++ + Sbjct: 977 TVRGLEAPEISNLDPTISNVTPKTSLLFEVTDTGVGISPQELDNIFDAFVQTQAGKRAKN 1036 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL +++ +++ G+ ++ STP +G+ P+ Sbjct: 1037 -GTGLGLTISRKLIEIMGGEIFVNSTPGQGSTFTFTVPV 1074 >gi|116051482|ref|YP_789685.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa UCBPP-PA14] gi|115586703|gb|ABJ12718.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa UCBPP-PA14] Length = 918 Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/257 (31%), Positives = 140/257 (54%), Gaps = 14/257 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL-- 618 I+ K+E + A + A E+ KS FLA++SHEIRTPL ++G +++++ PL Sbjct: 384 INALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDT---PLDR 440 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 G Y+E I SG+ ++ ++ND+LD ++IESGK++L L+E +S+ ++L Sbjct: 441 GQAAYVET---IASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQ 497 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TS 733 A EKR+ + +PR L D ++Q+ +N+LSNA+ FT G + + Sbjct: 498 AVEKRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAE-GHVAVRVQRRFDEGG 556 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E ++ V D+G+G++ + + F Q +S R G+GLGL +++ +V G+ Sbjct: 557 RERLLYSVSDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIE 616 Query: 794 IFSTPAKGTLIEIIFPL 810 + S P KGT + PL Sbjct: 617 VSSEPGKGTRFSVDLPL 633 >gi|159900452|ref|YP_001546699.1| GAF sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893491|gb|ABX06571.1| GAF sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 701 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 111/379 (29%), Positives = 189/379 (49%), Gaps = 40/379 (10%) Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY--PV-EDILRKPFTVFLEQNTPSV 508 MQL L + G+A+ + EG IL TN A +L+ P E L P+ + P + Sbjct: 335 MQLQQTLASLPLGLALTDGEGRILRTNPAWYQLWQIEQPADETALYLPWDIL-----PLL 389 Query: 509 MNHY-----LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 + LT+ + Q E + L E L L++ + P H I+ Sbjct: 390 LKRLSHPLELTDFFAECQAQPDETLELALRLSEPLQDLKL--RSTPVKDA----QHQITG 443 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 ++ ++I K++F++ VSHE+RTPLT+I+G++E++ + F P+ Sbjct: 444 RLVVIEDVTREREI----DKMKNEFVSVVSHELRTPLTSILGYTELLLAREFKPVERQ-- 497 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK- 682 E+ + N + +V+DLL++S++++G++ L+ VSL + + E + +EK Sbjct: 498 -EFVQTVYDQANQLSKMVDDLLNLSRLDAGQIKLNRWVVSLHQIIREITKQLNETLSEKH 556 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII----------STTHT 732 R+LI IP I AD V+QI N+LSNAI ++P+GGQ+ + Sbjct: 557 RLLI--DIPEGIPPIFADKDKVRQILTNLLSNAIKYSPNGGQVALIVRELRKVPPGAPPL 614 Query: 733 SNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 NE VI+ VRD G+G++ +L K F ++ NS + GTGLGL + KA+++ + G+ Sbjct: 615 PNERSVIIAVRDQGMGISEEDLPKLFTRFFRVDNSTTRKIGGTGLGLSITKALIELHGGR 674 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + ST +GT + P+ Sbjct: 675 IWATSTLGRGTTFWVTLPI 693 >gi|328470983|gb|EGF41894.1| hypothetical protein VP10329_09312 [Vibrio parahaemolyticus 10329] Length = 878 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/248 (33%), Positives = 134/248 (54%), Gaps = 11/248 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + E +++ +++ HAK+ A + KS FLA +SHEIRTPL I+G +E++ + Sbjct: 355 VEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSEL----S 410 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P E + ID S + +L ++ND+LD+SKIESG++ L + E V +++ L Q A Sbjct: 411 PHQQEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILFQSKAT 470 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 K++ + S NIP R++ D +KQI N++SNA+ FT G I + ++ E Sbjct: 471 SKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQ-GYISVDVSYEEALEQGR 529 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + ++D+G+G+ +L +PF Q + GTGLGL + + +V GK Sbjct: 530 GSLTFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGKLVA 589 Query: 795 FSTPAKGT 802 ST GT Sbjct: 590 TSTKGVGT 597 >gi|192360040|ref|YP_001981948.1| two-component hybrid sensor and regulator [Cellvibrio japonicus Ueda107] gi|190686205|gb|ACE83883.1| two-component hybrid sensor and regulator [Cellvibrio japonicus Ueda107] Length = 668 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 87/253 (34%), Positives = 141/253 (55%), Gaps = 9/253 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K+ + ++ AK+ AEK + KS FL+ +SHE+RTPL AI+G++ Q F G Sbjct: 272 DITEVKRAEERVLLAKEQAEKANQAKSAFLSSMSHELRTPLNAILGYT-----QLFEYDG 326 Query: 620 NPRYIEYANY--IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 N + N I ++G +L ++ND+LD++KIESGKM + EPV + + E + VQ Sbjct: 327 NLSREQVTNIREIRKAGEHLLQLINDVLDLAKIESGKMMVSLEPVLVSRVIKECFTFVQP 386 Query: 678 YANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A+ I + + A+ ++ADL KQ LN+LSNAI + GG++ + ++ Sbjct: 387 QADALGIRLYATLADQEKTYVVADLVRFKQALLNLLSNAIKYNIVGGEVEVRLDVQPMDQ 446 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + VRDTG G+ + +PF ++ +++ EG+G+GL + K +V+ G S Sbjct: 447 LRITVRDTGRGIPADRQHEVFQPFNRL-SAENSNIEGSGVGLVITKQLVEMMHGNLDFSS 505 Query: 797 TPAKGTLIEIIFP 809 A GT I P Sbjct: 506 AEAIGTSFWIDLP 518 >gi|46203549|ref|ZP_00051367.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 149 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 69/134 (51%), Positives = 89/134 (66%), Gaps = 1/134 (0%) Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 Q A RI++RTS A ++PR+ AD RS++Q AL +L AIH T +GGQ+I+STT Sbjct: 15 QAQAARHRIVLRTSLAPDLPRLKADERSIRQAALTVLGKAIHVTEAGGQVIVSTTLAERG 74 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 EV LRVRDTG GMT EL A++PF QI GE G GL L KA+V+AN G+F I Sbjct: 75 EVALRVRDTGTGMTEDELLGALEPF-QIGAPAVAEGEERGFGLTLTKALVEANRGRFRIT 133 Query: 796 STPAKGTLIEIIFP 809 S +GTL+E++FP Sbjct: 134 SRKDEGTLVEMLFP 147 >gi|150375914|ref|YP_001312510.1| multi-sensor hybrid histidine kinase [Sinorhizobium medicae WSM419] gi|150030461|gb|ABR62577.1| multi-sensor hybrid histidine kinase [Sinorhizobium medicae WSM419] Length = 917 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 112/383 (29%), Positives = 187/383 (48%), Gaps = 15/383 (3%) Query: 439 DTRINKRKMEIEVMQ----LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 ++ I K+K+E E + + + LE SDG + + + IL N ++F + LR Sbjct: 267 ESAIEKKKLEDEAERQRRTIAAALEVISDGFVLYDSDDRILVANSKYCEIFPSHKPNTLR 326 Query: 495 -KPFTVFLEQN--TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLP 549 + F +EQN T V + +D R L + G E++ +RI +K+P Sbjct: 327 GRSFREIVEQNLETGQVDLEGKSPQEWVDERVRLHRDPAGLVDEKRFGERWVRISKRKIP 386 Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 ++ DI+E KQ + +L AK AE + KS FLA +SHE+RTPL AIIG+SE+ Sbjct: 387 DGGTVAV-YTDITELKQRQVELERAKSHAESANEAKSQFLASMSHELRTPLNAIIGYSEM 445 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + + + I +G +L ++ND+LD+SKIE+ KM++ E SL E + Sbjct: 446 LIEEARDH-KEEELVPDLDKIASAGRHLLTLINDILDLSKIEANKMDVFLETFSLAELLR 504 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 + + V F +++ ++ +D ++Q N+LSNA FT GG++I+ Sbjct: 505 DVAATVAPLMARNGNAFTQDFEDDLGKMHSDQTKLRQNLFNLLSNAAKFT-KGGRVILRV 563 Query: 730 THTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 E ++ +V DTG+GMT + ++ F Q S GTGLGL + ++ Sbjct: 564 RREQRAEHDWLVFQVSDTGIGMTPEQQDRLFNAFTQADASTTRNYGGTGLGLSITRSFCR 623 Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809 G + S KG++ + P Sbjct: 624 LIGGVVTVESEAGKGSVFTMEVP 646 >gi|307719332|ref|YP_003874864.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Spirochaeta thermophila DSM 6192] gi|306533057|gb|ADN02591.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Spirochaeta thermophila DSM 6192] Length = 1078 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 83/252 (32%), Positives = 135/252 (53%), Gaps = 8/252 (3%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 ++ DI+ +K +L A++ AE+ S KS FLA +SHEIRTPL AI G S+++ R Sbjct: 540 AVVTRDITSYKDALRRLEDARRQAEEASRAKSAFLASMSHEIRTPLNAITGMSDLLLLSR 599 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 +P E I S +L ++ND+LD+S+IE+G++ L P+ + V + Sbjct: 600 V----SPEVEEGLAIIKDSAGTLLALINDILDLSRIEAGRIELERIPLRFPDLVRHTWEM 655 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT- 732 + A K + + +P ++ D ++QI +N+LSNA+ FT GG + T H Sbjct: 656 FRPQAETKGLSFELRLSEGLPPVVNGDPVRIRQILINLLSNALKFTEEGGVTLSVTGHRM 715 Query: 733 --SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + EV L V DTG+G+ +LE+ +PF Q +S R GTGLGL +++ + + G Sbjct: 716 YDRDWEVELVVEDTGIGIPPEKLERIFEPFTQADSSITRRYGGTGLGLSISRQLAEMMGG 775 Query: 791 KFYIFSTPAKGT 802 + S +G+ Sbjct: 776 TIVVSSEVGRGS 787 >gi|146306761|ref|YP_001187226.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] gi|145574962|gb|ABP84494.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] Length = 916 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 140/237 (59%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ +PR +Y Sbjct: 269 ELDFARKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSEL----SPRQQDYLAT 324 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+EK++ + + Sbjct: 325 IEKSADSLLGIINEVLDFSKIEAGKLVLESIPFNLRDLLQDTLTILAPAAHEKQLELISL 384 Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTG 745 + P L D +KQ+ N++SNAI FT G + ++ + ++ + V DTG Sbjct: 385 IYRDTPLALRGDPLRLKQVLTNLVSNAIKFTREGTIVMRAMVEDESVDSAQLRISVMDTG 444 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ +L + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 445 IGLSDEDLRALFQAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 501 >gi|296332102|ref|ZP_06874566.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675503|ref|YP_003867175.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150873|gb|EFG91758.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413747|gb|ADM38866.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii str. W23] Length = 579 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 102/373 (27%), Positives = 188/373 (50%), Gaps = 27/373 (7%) Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 VD R E++ +L +++E G+ +I+ G I NR+ +K F +LR+ + Sbjct: 220 VDLMEMTRTQEMQRDRLLTVIENIGSGLIMIDGRGFINLVNRSYAKQFHINPNQMLRRLY 279 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 E ++ Q +E I + TK+ KLL L I I++ F Sbjct: 280 HDAFEHE---------------EVIQLVEDIFMTETKKCKLLRLPIKIERRYFEVDGVPI 324 Query: 558 MHDISEWKQEK---NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 M EWK + ++ KK+ + + DF+A VSHE++TP+T+I GF+E + + Sbjct: 325 MGPDDEWKGIVLVFHDMTETKKLEQ----MRKDFVANVSHELKTPITSIKGFTETLLD-- 378 Query: 615 FGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + + + E+ + I + + +V DLLD+SKIE L E + + E + Sbjct: 379 -GAMEDKEALSEFLSIILKESERLQSLVQDLLDLSKIEQQNFTLSIETFEPAKMLGEIET 437 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 L++ A+EK I ++ + + + D +KQ+ LN+++NA+ +TP GG + I+ T Sbjct: 438 LLKHKADEKGISLQLNLPKDPLYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAINVT-PR 496 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +++ + V D+G+G+ E+ + + F ++ + GTGLGL + K +++A+ GK Sbjct: 497 EKDIQIEVADSGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKID 556 Query: 794 IFSTPAKGTLIEI 806 + S P +GT+ + Sbjct: 557 VKSEPGRGTVFTV 569 >gi|219849612|ref|YP_002464045.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543871|gb|ACL25609.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 596 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 107/381 (28%), Positives = 188/381 (49%), Gaps = 44/381 (11%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--------------- 500 +I++ SD I +++R +L N A ++LF ++ +P TV Sbjct: 240 AIVDQISDAIIVVDRHDRVLDLNPA-AQLFFADQTAVIGQPLTVVAPTWLYEQVRDRYEG 298 Query: 501 -LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-RIIIKKLPFSSCYSLTM 558 E N P+ +L+ DLR T + ++ + +++ RI + + Sbjct: 299 QFELNQPTSEG-----MLTYDLRCT-------TLRDRRGMAMGRIFV------------L 334 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ KQ L AK+ AE + KS FLA +SHE+RTPLTAI+G+SEVI++ Sbjct: 335 RDITLLKQAALALQKAKEAAEAANQAKSTFLAMMSHELRTPLTAILGYSEVIRDD-LQIR 393 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 G I + + +G +L+++ND+L+++++E+ + ++ EP+ L E V+E +S Sbjct: 394 GQNDLIADLDRVVLAGRHLLNLINDILELARLEANSLQVYPEPLHLAEIVTEVVSTSHGL 453 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A + + + N+P + AD ++Q+ LN++ NA FT GQI + + Sbjct: 454 AQRNQNTLTVTVEPNLPPVKADPTRLRQVLLNLIGNACKFTEQ-GQIHVRCYSPQPGIIQ 512 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V DTG+G+ +L +PF Q+ N R G GLGL +++ + A G+ + S P Sbjct: 513 IDVSDTGIGIPPEQLASLFQPFMQVDNGTTRRYGGAGLGLAISRRLCQAMGGEIVVESEP 572 Query: 799 AKGTLIEIIFPLYDTSHPHDC 819 +G+ + P+ DT C Sbjct: 573 QRGSTFSVRLPVADTVMSPLC 593 >gi|239996811|ref|ZP_04717335.1| PAS signal transduction protein [Alteromonas macleodii ATCC 27126] Length = 773 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 106/372 (28%), Positives = 178/372 (47%), Gaps = 19/372 (5%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF--TVFLEQNTPSVMNHYL 513 SI ++ +G+ +N EG N A S+L G+ ++++ + F TV ++ +++ Sbjct: 134 SITDSIGEGVYAVNGEGTTQFLNPAASRLLGWSLDELQGRRFHDTVHYQKGDGTLLPREQ 193 Query: 514 TEILSLDLRQTLEKIT---LGSTKEEKLLSLRII----IKKLPFSSCYSLTMHDISEWKQ 566 + +L +R + + K +L + I+ + K + +DIS K Sbjct: 194 CPV-NLTIRSGQSYTSYEDFFTDKRGRLFPISIVAVPLLDKEGKPDGHVGVFNDISGQKA 252 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + KL A A+ + KSDFLA +SHEIRTP+ AIIG + + N + +Y Sbjct: 253 IEQKLQKAYDEAQSANKAKSDFLATMSHEIRTPMNAIIGLTHL----ALESTDNEQRQQY 308 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--RI 684 + RS +LD++N +LD SK+E+ K+ + EP +L + + + + Q+ A +K ++ Sbjct: 309 LEKVQRSSTALLDLMNSILDFSKVEADKIEIVDEPFTLTKTIDKLAQVFQVKAQQKQLQL 368 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 L N+ + D + Q+ LN+LSNAI FT SG II T ++ V DT Sbjct: 369 LFDIRCHTNL-QCRGDSEKIYQVLLNLLSNAIKFTASGH--IILTVEKRENQLAFSVSDT 425 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + K K F Q S GTGLGL + K +V+ G + S KG+ Sbjct: 426 GMGISEHVKSKLFKAFVQADASISREYGGTGLGLAICKRLVELMGGDLTLESEVDKGSCF 485 Query: 805 EIIFPLYDTSHP 816 P+ P Sbjct: 486 SFALPVCSDEGP 497 >gi|315497728|ref|YP_004086532.1| multi-sensor hybrid histidine kinase [Asticcacaulis excentricus CB 48] gi|315415740|gb|ADU12381.1| multi-sensor hybrid histidine kinase [Asticcacaulis excentricus CB 48] Length = 1152 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 84/257 (32%), Positives = 149/257 (57%), Gaps = 12/257 (4%) Query: 565 KQEKNKLSH-AKKIA------EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 +Q+K+ L+ A IA E+ S +KSDFLA +SHE+RTPL + + ++++ + R G Sbjct: 457 EQQKDDLNRSAADIALKAQELEQASRYKSDFLANMSHELRTPLNSSLILAKLLADNRDGN 516 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 L + +++A I SGN +L ++ND+LD+SKIE+G+M+++ EPVS S+ + + Sbjct: 517 LTEEQ-VKFARTIQSSGNDLLALINDILDLSKIEAGQMDINAEPVSFRRLASDLTRMFEP 575 Query: 678 YANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A EK + R + +P + +D + ++Q+ N+LSNA+ FT G ++ +N + Sbjct: 576 LAGEKGLTFRVEAHDTLPDLFDSDRQRLEQVLKNLLSNALKFTERGS--VVLRMSAANNK 633 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V V DTG+G++ + + + F Q ++ + GTGLGL +++ + G + S Sbjct: 634 VHFAVSDTGIGISAEQQQSIFEAFRQADSTISRKYGGTGLGLSISRELSRLLGGHIELKS 693 Query: 797 TPAKGTLIEIIFPL-YD 812 P +G++ +I PL YD Sbjct: 694 EPDEGSIFTLILPLIYD 710 >gi|104780548|ref|YP_607046.1| GacS sensor kinase protein [Pseudomonas entomophila L48] gi|95109535|emb|CAK14236.1| GacS sensor kinase protein [Pseudomonas entomophila L48] Length = 918 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 140/237 (59%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y Sbjct: 271 ELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQLDYLGT 326 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ + + Sbjct: 327 IEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSL 386 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTG 745 + P ++ D +KQI N++SNAI FT G ++ + ++ + + V+DTG Sbjct: 387 VYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVVRAMLEDDQDDTVQLRISVQDTG 446 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 447 IGLSPQDVRTLFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 503 >gi|107102995|ref|ZP_01366913.1| hypothetical protein PaerPA_01004064 [Pseudomonas aeruginosa PACS2] Length = 918 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/257 (31%), Positives = 140/257 (54%), Gaps = 14/257 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL-- 618 I+ K+E + A + A E+ KS FLA++SHEIRTPL ++G +++++ PL Sbjct: 384 INALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDT---PLDR 440 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 G Y+E I SG+ ++ ++ND+LD ++IESGK++L L+E +S+ ++L Sbjct: 441 GQAAYVET---IASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQ 497 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TS 733 A EKR+ + +PR L D ++Q+ +N+LSNA+ FT G + + Sbjct: 498 AVEKRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAE-GHVAVRVQRRFDEGG 556 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E ++ V D+G+G++ + + F Q +S R G+GLGL +++ +V G+ Sbjct: 557 RERLLYSVSDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIE 616 Query: 794 IFSTPAKGTLIEIIFPL 810 + S P KGT + PL Sbjct: 617 VSSEPGKGTQFSVDLPL 633 >gi|317491023|ref|ZP_07949459.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920570|gb|EFV41893.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 913 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 88/240 (36%), Positives = 135/240 (56%), Gaps = 14/240 (5%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +V+K PL N +Y Sbjct: 273 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQVLKT----PL-NATQSDYLQ 327 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS N +L I+ND+LD SK+E+GK+ L P L E + E L+ A+EK I + Sbjct: 328 TIERSANNLLTIINDVLDFSKLEAGKLVLEHIPFLLRETIDEVTVLLAPSAHEKGIELTL 387 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHTSNEEVILRVR 742 + N++P ++ D ++Q+ N+L NAI FT G ++ +T H EV+ V Sbjct: 388 NIRNDVPEHVIGDPMRIQQVLTNLLGNAIKFTEKGNIDIRVELRSATPHQVELEVL--VH 445 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G++ + + + F Q S R GTGLGL + + +V+ G S P KG+ Sbjct: 446 DTGIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNKGS 505 >gi|196231875|ref|ZP_03130731.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196223997|gb|EDY18511.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 1088 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/255 (30%), Positives = 145/255 (56%), Gaps = 9/255 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ + + A++ AE S K++FL+R+SHE+RTPL AI+GF+++++ + G P Sbjct: 691 ERAEESIRQAREQAELASRAKTEFLSRMSHELRTPLNAILGFTQLMETETLG----PSLA 746 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E ++ R+G +L ++N++LDIS+I++G+ L EP+ + +SEAI +Q A I Sbjct: 747 ESVEHVSRAGKHLLSLINEVLDISRIDAGRFALSPEPIEVHGFLSEAIESIQPLATRHVI 806 Query: 685 LIRTSFAN-NIP--RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + A +P ++LAD + V Q+ NILSNA+ + G++ +S + + + Sbjct: 807 PVTLEPATAEMPPLQVLADRQRVHQVMYNILSNAVKYNRINGRVTVS-YRVDGPRIRITI 865 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG G+ +L + PF ++ ++ EG+G+GL L++ +V+A G+ ++ S +G Sbjct: 866 ADTGRGIEPEKLSRLFLPFERL-GAESTDIEGSGIGLALSRGIVNALHGELHVESRVGEG 924 Query: 802 TLIEIIFPLYDTSHP 816 + + P D P Sbjct: 925 STFWLTLPRADEISP 939 >gi|144900213|emb|CAM77077.1| Signal transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 1183 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 85/259 (32%), Positives = 138/259 (53%), Gaps = 6/259 (2%) Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 ++ DI++ K++++ L+ AK+ AE S KS FLA +SHEIRTP+ ++ ++++++ Sbjct: 501 AVCVSTADITKRKEQEDALAEAKQTAEDASQAKSLFLATMSHEIRTPMNGVLTMAQLLED 560 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 PL + E A I S +L I+ND+LD SKIESGK+ L +SL + + Sbjct: 561 M---PLAQEQK-EMARVIRDSATALLTIINDILDFSKIESGKLELEIIEMSLSDVIESVA 616 Query: 673 SLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 L+ A+EK I + T +P + L D ++QI N+ NA+ FT G + IS Sbjct: 617 ELLAPRASEKGIGLMTFIDPALPDLFLGDATRLRQIVTNLAGNAVKFTDK-GYVRISAEA 675 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 ++ V + DTG+G+ + + K +PF Q S R GTGLGL + + +V G+ Sbjct: 676 AADGHVRFTISDTGIGLNDEQQAKLFEPFSQADASISRRYGGTGLGLSICRRLVAMMDGE 735 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + S +G+ PL Sbjct: 736 IGVDSQVGQGSSFWFSLPL 754 >gi|148549273|ref|YP_001269375.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1] gi|148513331|gb|ABQ80191.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1] Length = 917 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 140/237 (59%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y N Sbjct: 271 ELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEM----TPRQLDYLNT 326 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ + + Sbjct: 327 IEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSL 386 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTG 745 + P ++ D +KQI N++SNAI FT G ++ + H ++ + V+DTG Sbjct: 387 IYRDTPASLVGDPLRLKQILTNLVSNAIKFTREGTIVVRAMLEDEHEDCAQLRISVQDTG 446 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++ ++ + F Q NS + GTGLGL ++K +++ + + STP +G+ Sbjct: 447 IGLSPQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGDEIGVDSTPGEGS 503 >gi|308126279|ref|ZP_05908879.2| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] gi|308107066|gb|EFO44606.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] Length = 882 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/248 (33%), Positives = 134/248 (54%), Gaps = 11/248 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + E +++ +++ HAK+ A + KS FLA +SHEIRTPL I+G +E++ + Sbjct: 359 VEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSEL----S 414 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P E + ID S + +L ++ND+LD+SKIESG++ L + E V +++ L Q A Sbjct: 415 PHQQEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILFQSKAT 474 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 K++ + S NIP R++ D +KQI N++SNA+ FT G I + ++ E Sbjct: 475 SKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQ-GYISVDVSYEEALEQGR 533 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + ++D+G+G+ +L +PF Q + GTGLGL + + +V GK Sbjct: 534 GSLTFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGKLVA 593 Query: 795 FSTPAKGT 802 ST GT Sbjct: 594 TSTKGVGT 601 >gi|47679006|dbj|BAD20690.1| probable two-component sensor [Pseudomonas sp. BS] Length = 1211 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 115/364 (31%), Positives = 185/364 (50%), Gaps = 29/364 (7%) Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530 +G +LS NR+ K G E +L K ++N S + + + ++ QT+E Sbjct: 588 KGRMLSCNRSYLKSVGLSAEQVLNKTVRQLPKENFESQPDFHRNYLQAMRDGQTIE---- 643 Query: 531 GSTKEEKLLSLRIIIKKL--PFSSCYSLTMH------DISEWKQEKNKLSHAKKIAEKES 582 S +L + I PF +T DI+E +Q +L AK +A+ S Sbjct: 644 -SVHAVQLQGREVWINHWVQPFEDSQGVTKGVICGWLDITEHRQLIEQLQEAKNLADDAS 702 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 K+ FLA +SHEIRTP+ A+IG E+ +K P+ IE A+ S N +L+++ Sbjct: 703 RAKTSFLATMSHEIRTPMNAVIGILELALKRADSQPIDRA-SIEIAHT---SANSLLELI 758 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILAD 700 D+LDI++IESG+++L + +L E V + + A +KR+ + ++I +L D Sbjct: 759 GDILDIARIESGRLSLSPKRANLRELVESVARVFEGLARQKRLNLILDIDSSINCDVLVD 818 Query: 701 LRSVKQIALNILSNAIHFTPSGG-QIIIS--TTHTSNEEVILRVRDTGVGMTNYELEKAM 757 KQI N++SNAI FT G +I IS + S V L V DTGVG++ + ++ Sbjct: 819 ALRFKQILSNLVSNAIKFTEEGSVKISISGLAVNASLLNVNLSVEDTGVGISPSDQQRLF 878 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI-----IFPLYD 812 +PF Q + Q EGTGLGL + +++ + G+ + ST +GT +E+ + L D Sbjct: 879 RPFVQAQRNVQ-HTEGTGLGLVICRSLCEMMGGRVGLTSTLGRGTRVELEVRLQVLELID 937 Query: 813 TSHP 816 HP Sbjct: 938 V-HP 940 >gi|209527054|ref|ZP_03275569.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209492482|gb|EDZ92822.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1376 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 85/259 (32%), Positives = 137/259 (52%), Gaps = 17/259 (6%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + + L A + A+ + KS+FLA +SHEIRTP+ AI+GF +++++ + PR Sbjct: 862 ELEHKNQALKEATRHAQAANRAKSEFLANMSHEIRTPMNAILGFCDLLQSL----VSEPR 917 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +Y I SG +L ++ND+LD+SKIE+GKM LH EP+ L + E + A EK Sbjct: 918 QQQYVKSIAASGKTLLSLINDILDLSKIEAGKMELHQEPIDLRVMLEEIYQIFCHKAAEK 977 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN------- 734 ++ + +N+P+ I+ D ++QI LN++ NA+ FT G + IS SN Sbjct: 978 KVELIREINDNLPKAIMFDEVRLRQILLNMVGNALKFTDEGW-VKISVVTNSNTPLNAEN 1036 Query: 735 -EEVI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 E I + + DTG+G+ + ++ F Q + G+GLGL + K + G Sbjct: 1037 PESTISLEIAIADTGIGIAPEQQQRIFDSFIQSEGQSTRKYGGSGLGLAITKRLTQMLGG 1096 Query: 791 KFYIFSTPAKGTLIEIIFP 809 + S KG+ +IFP Sbjct: 1097 TISLESQLGKGSQFTLIFP 1115 >gi|225419781|ref|ZP_03762084.1| hypothetical protein CLOSTASPAR_06119 [Clostridium asparagiforme DSM 15981] gi|225041585|gb|EEG51831.1| hypothetical protein CLOSTASPAR_06119 [Clostridium asparagiforme DSM 15981] Length = 938 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 136/231 (58%), Gaps = 10/231 (4%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG-NPRYIEYANYIDRSGNL 636 AE S+ KSDFL+++SHEIRTP+ AI+G +E++ + G +P + I S Sbjct: 557 AEARSTAKSDFLSKMSHEIRTPMNAIVGMTELVSMES----GLSPETRDKLEKIRSSSRY 612 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 +L ++ND+LD+S+IESG ++++ E SL E + E S++ A ++ + + + Sbjct: 613 LLSLINDILDMSRIESGNLSINEEAFSLREILEEVESIISGQAQQRGLALECVRNIDCDW 672 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGG--QIIISTTHTSNEEVI--LRVRDTGVGMTNYE 752 + D ++Q+ LN+L N++ FTP+GG Q+ + +E + VRDTGVG+++ + Sbjct: 673 LTGDPIRLRQVLLNLLGNSVKFTPTGGLLQLSVQACGMEGQEAVYDFSVRDTGVGISHED 732 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 E+ +PF Q+ +++ GTGLGLP+++ +V + G+ + S KG + Sbjct: 733 QERIFRPFEQL-GGNELKSLGTGLGLPISRNLVRSMGGELTLESDTGKGAV 782 >gi|281355936|ref|ZP_06242429.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] gi|281317305|gb|EFB01326.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] Length = 835 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 83/258 (32%), Positives = 146/258 (56%), Gaps = 11/258 (4%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ D++ K+ + K+ + K AE + KS FLA +SHEIRTPL AIIGFSE++KN+ Sbjct: 434 TLVDVTNRKETEAKIRGSLKEAEVANRAKSTFLATMSHEIRTPLNAIIGFSEILKNE--- 490 Query: 617 PLGNP-RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G P +E I+ +G +L ++ND+L+ISKI++ K+ + + + L+ + + + Sbjct: 491 --GLPAEALESVEAINAAGESLLALINDVLEISKIDADKLEIIYGWIRLETVLGDVGRIF 548 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TS 733 + +K++ +R +++P ++QI N+L NA+ FT SG +++ T Sbjct: 549 EPQLRQKQLALRMEIPSSLPEFHFSASRLRQILYNLLGNAVKFTVSGSVTVMAAVRKGTG 608 Query: 734 NE-EVILRVRDTGVGMTNYELEKAMKPFGQ--IPNSQQIRGEGTGLGLPLAKAMVDANMG 790 N+ E+ + V DTG G+T + +K +PF Q ++ EGTGLGL + + + + G Sbjct: 609 NQAELEIAVTDTGSGITPEDQKKIFEPFVQSRTGDAGGDASEGTGLGLAIVRRLAEKMNG 668 Query: 791 KFYIFSTPAKGTLIEIIF 808 + + S P +G+ I+F Sbjct: 669 EVLLESEPGRGSRFRIVF 686 >gi|94502132|ref|ZP_01308633.1| Multi-sensor Hybrid Histidine Kinase [Oceanobacter sp. RED65] gi|94425734|gb|EAT10741.1| Multi-sensor Hybrid Histidine Kinase [Oceanobacter sp. RED65] Length = 892 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/237 (36%), Positives = 138/237 (58%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L+ A++ A S KSDFLA +SHEIRTPL I+GF+ ++ R N R +EY Sbjct: 260 ELNLARREALDASQTKSDFLANMSHEIRTPLNGILGFTRLLSGTRL----NKRQLEYLQT 315 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+ S +L I+ND+LD SKIE+GK+ L PV++ + + + I+++ A++K I + Sbjct: 316 IESSSTSLLSIINDILDFSKIEAGKLVLDQAPVNVSDIIDDVITMLAPEAHKKHIELAAL 375 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTG 745 ++P+ I+ D +KQI N+++NAI FT +G I+ + +V L+ V+DTG Sbjct: 376 VYQDVPQEIMGDSLRLKQILTNLINNAIKFTHTGSVIVRVMLEEQEGSDVTLKFSVQDTG 435 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +GMT+ + + K F Q S R GTGLGL +++ +V+ G+ ST G+ Sbjct: 436 IGMTDDQQKNLFKAFSQGDESTSRRYGGTGLGLVISRYLVEHMQGELGFDSTAHVGS 492 >gi|37679341|ref|NP_933950.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] gi|37198084|dbj|BAC93921.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] Length = 718 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 81/261 (31%), Positives = 141/261 (54%), Gaps = 11/261 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK-NQRFGPL 618 DI + K+ + LS K AE + KS FLA +SHE+RTPL A++G+++++K +QR Sbjct: 241 DIDKLKRLQQSLSETKDKAEVANRAKSIFLANMSHELRTPLNAVLGYTQLMKCDQRL--- 297 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 ++ EY I+RSG +L ++ND+LD+SKI++G + + + E E L+Q+ Sbjct: 298 -TAKHHEYLEIINRSGEHLLSLINDVLDMSKIDAGHSVVERKWFNFREVSEEINDLMQMK 356 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSN 734 A +K++ + +++P +L D+ +Q+ +N+L NAI FT G I Sbjct: 357 AMQKQLTLHCRVEDSVPHFVLGDVVKTRQVLINLLGNAIKFTYRGNVRLNIASEALQNGQ 416 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +V V D+G+G++ E+ +PF Q+ + I GTGLGL ++K V+ G+ + Sbjct: 417 HKVTFEVSDSGIGISEENQERVFQPFEQLDSD--ITQNGTGLGLSISKQFVELMGGQLVL 474 Query: 795 FSTPAKGTLIEIIFPLYDTSH 815 S +G+ + + H Sbjct: 475 KSELHRGSTFSFSLVMETSEH 495 >gi|229591212|ref|YP_002873331.1| hybrid sensory histidine kinase in two-component regulatory system with UvrY [Pseudomonas fluorescens SBW25] gi|229363078|emb|CAY50066.1| hybrid sensory histidine kinase in two-component regulatory system with UvrY [Pseudomonas fluorescens SBW25] Length = 917 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 141/237 (59%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQLDYLGT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRT 688 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ Sbjct: 326 IEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTG 745 + + ++ D +KQI N++SNAI FT G + +I + ++ + V+DTG Sbjct: 386 VYRDTPLALVGDPLRLKQILTNLISNAIKFTREGTIVARAMIEDEQEDSVQLRISVQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|86137029|ref|ZP_01055607.1| sensor histidine kinase/response regulator [Roseobacter sp. MED193] gi|85826353|gb|EAQ46550.1| sensor histidine kinase/response regulator [Roseobacter sp. MED193] Length = 782 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 88/283 (31%), Positives = 154/283 (54%), Gaps = 14/283 (4%) Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 LR+I ++ SL + DI+ + +L A++ AE + KS FLA +SHEIRTP+ Sbjct: 178 LRLIDQRGHGGDVVSLAL-DITTSVNYEEELRSARERAEAANRAKSAFLANMSHEIRTPM 236 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 ++G +E++ + L + + + YAN I SG +L I+ND+LD SKIE+ K+ LH E Sbjct: 237 NGVVGMAELLNDT---TLSDEQKL-YANTIKNSGEALLVIINDVLDYSKIEADKLVLHEE 292 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFT 719 L+ + E + L+Q A +K + I + +P + + D ++Q+ N+ NA+ FT Sbjct: 293 VFDLERCIHEIVMLLQPTARDKGLTILVDYDLFLPTQFVGDPGRIRQVLTNLAGNAVKFT 352 Query: 720 PSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 + G + + T SN E V + DTG+G+ +++ F Q+ + + + EGT Sbjct: 353 -NEGHVTLRVTGISNPEEGTCAVHCMIEDTGIGIPVEKIDHVFGEFNQVEDERNRKFEGT 411 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSH 815 GLGL +++ +++ G+ ++ S KG+ I P+ + SH Sbjct: 412 GLGLAISRRLIELMKGEIWVESDEGKGSCFGFRIPLPIVEGSH 454 >gi|27377398|ref|NP_768927.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27350542|dbj|BAC47552.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 833 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 114/367 (31%), Positives = 183/367 (49%), Gaps = 20/367 (5%) Query: 453 QLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILR-KPFTVFLEQNTPSVMN 510 +L I EA +AI+ +GII NR S++F L + T++ + Sbjct: 197 RLRVIAEAAPMAVAIVTFDDGIIRYANRRFSEMFELEGSSALGLQAKTLYADPQHRERFI 256 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEK 568 LTE ++ + L K G E+ +L I +++ F ++ + DIS+ K+ + Sbjct: 257 GALTEHGHVEGMEMLLKRVGG----EEFWAL-IASQRVEFEGRPAMINGLADISDRKRME 311 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI--KNQRFGPLGNPRYIEY 626 +L A +E+ + KSDF+A +SHE+RTPL AIIG+SE++ Q G R E Sbjct: 312 GELHKAIWASEQATRAKSDFVANMSHELRTPLNAIIGYSEILFEDAQSAG-----RESEM 366 Query: 627 ANY--IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 A+ I +G +L +++++LD+SKIE+GKM L+ E L + + V A + Sbjct: 367 ADLRKIQDAGKHLLGLIDNILDLSKIEAGKMTLYLETFELRPMIDSVAATVTPLAKKTGN 426 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII--ISTTHTSNEEVILRVR 742 + + A+ I I +DL V+Q N+LSNA FT +G + + T+ + E + +VR Sbjct: 427 ALVANCADEIGTIHSDLTKVRQTLFNLLSNACKFTRNGTITLTALRDTNAAGEWIEFQVR 486 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+GMT + K + F Q +S GTGLGL + K+ G + S KGT Sbjct: 487 DTGIGMTPDQQAKVFEAFTQADDSTTRVYGGTGLGLAITKSFCRLMGGDVTLTSEAGKGT 546 Query: 803 LIEIIFP 809 + P Sbjct: 547 AFVVRLP 553 >gi|172036692|ref|YP_001803193.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171698146|gb|ACB51127.1| probable two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 835 Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 95/352 (26%), Positives = 185/352 (52%), Gaps = 26/352 (7%) Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522 +GI +++ EG I N A +F P++ +L F + + N P + EI+ + Sbjct: 244 NGIILVDTEGKIKFANPAALAIFEQPLQSLLEYDFGIPIVSNKPVEL-----EIIKAKNK 298 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 ++ + T+ EK S Y +++ +I+E K+ + L AK+ A+ + Sbjct: 299 TGFVEMNVTFTEWEK-------------ESVYLVSIREITERKKAEEALIKAKEEADLAN 345 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 K++FLA VSHE+RTP+ AI+GF+E++K + P EY I S N +L ++N Sbjct: 346 QAKTEFLANVSHELRTPMNAILGFAELLKLKLKAQ--EPPIYEYIETIYNSSNSLLSLIN 403 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DL 701 DLLDI+++E+GK+ L++ S+ ++E I++ A+++++ + +N+P + D Sbjct: 404 DLLDINQVEAGKIELNYHGFSVRTLLTEIINIFSNQASKQQLQLLVDIQDNVPEFINFDS 463 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTT----HTSNEEVILRVRDTGVGMTNYELEKAM 757 ++QI +N++ N++ FT S G I +S + + + + + V+DTG+G+ + + ++ Sbjct: 464 LRLRQILVNLIGNSLKFT-SKGYIKVSLSMQNLYGNYGTLKIEVQDTGIGIKDEDKQQIF 522 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q R G GLGL + + + + G + S +G+ ++F Sbjct: 523 EAFIQSQGQDNYRYGGNGLGLFITQKITEFLGGTITLDSEWGEGSTFTLMFA 574 >gi|153837192|ref|ZP_01989859.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810] gi|149749609|gb|EDM60355.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810] Length = 882 Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/248 (33%), Positives = 134/248 (54%), Gaps = 11/248 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + E +++ +++ HAK+ A + KS FLA +SHEIRTPL I+G +E++ + Sbjct: 359 VEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSEL----S 414 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P E + ID S + +L ++ND+LD+SKIESG++ L + E V +++ L Q A Sbjct: 415 PHQQEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILFQSKAT 474 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 K++ + S NIP R++ D +KQI N++SNA+ FT G I + ++ E Sbjct: 475 SKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQ-GYISVDVSYEEALEQGR 533 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + ++D+G+G+ +L +PF Q + GTGLGL + + +V GK Sbjct: 534 GSLTFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGKLVA 593 Query: 795 FSTPAKGT 802 ST GT Sbjct: 594 TSTKGVGT 601 >gi|283851415|ref|ZP_06368696.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573153|gb|EFC21132.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 773 Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/244 (33%), Positives = 130/244 (53%), Gaps = 10/244 (4%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 ++ +L AK+ AE + KS FLA +SHEIRTP+ I+G +E+ P E Sbjct: 373 EQTGELRSAKEAAEAANRAKSQFLANMSHEIRTPMNGILGMTELTLLMDMPPQAG----E 428 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y + +SG+ +LDI+ND+LD+SKIESG L +P L E + + + + A EK + Sbjct: 429 YLRLVLQSGHALLDIINDILDLSKIESGHAVLDNKPFRLHECLGSTFNALAITAREKGLS 488 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII-----STTHTSNEEVIL 739 + +++P I+ D ++Q+ +NI+ NAI FTP GG + + ++ Sbjct: 489 LYHCIDSHVPEHIVGDQGRLRQVLINIVGNAIKFTPKGGVRVTVGRDGQPAPPGSARLLF 548 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 +V D G+G+ L + F QI S R GTGLGL ++K++V G+ + S Sbjct: 549 QVADDGIGIPKDGLGEVFHAFSQIGLSSHTRFGGTGLGLSISKSLVAMMGGRIWAESKLG 608 Query: 800 KGTL 803 +G+L Sbjct: 609 QGSL 612 >gi|90022553|ref|YP_528380.1| Signal transduction histidine kinase-like protein [Saccharophagus degradans 2-40] gi|89952153|gb|ABD82168.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans 2-40] Length = 614 Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 87/251 (34%), Positives = 141/251 (56%), Gaps = 11/251 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ++E+ QE+ K AE+ S K+DFLA +SHE+RTPL AIIGF+ + ++ L N Sbjct: 370 LNEYLQEE------KLRAERALSVKTDFLANMSHELRTPLNAIIGFTVRLLKKK-DQLQN 422 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + + I+R+G +L ++ND+LD+SKIE+ K++LH V L + ++ + + L A Sbjct: 423 QQ-VNAMEVIERNGRHLLAMINDILDLSKIEANKLDLHIASVELPQLCADIMGQISLAAE 481 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 EK + I + +P I D + QI LN+LSNAI +T SGG + + S + + L Sbjct: 482 EKSLRIDYEYV-EVPIIQTDSVRLSQILLNLLSNAIKYTESGG-VSVKIARNSIDSITLT 539 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 + DTGVG++ + +K F Q + + + G+GTGLGL + + + + ST Sbjct: 540 IADTGVGISEADQKKLFSRFEQFDDRTKFQVGKGTGLGLAIVANLCKILSIQVSVESTLG 599 Query: 800 KGTLIEIIFPL 810 G+ +I PL Sbjct: 600 LGSCFTLIIPL 610 >gi|42524788|ref|NP_970168.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39576998|emb|CAE78227.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 734 Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 92/267 (34%), Positives = 145/267 (54%), Gaps = 18/267 (6%) Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 Y +T + + +Q + +L A+ A + S KS FLA +SHEIRTP+ I+G +EV+ + Sbjct: 201 AYVMTEFEGRQRRQLEKQLVEARNEALQASHMKSSFLANMSHEIRTPMNGILGMTEVLLD 260 Query: 613 QRFGPLGNPRY-IEYANYIDRSGNL-VLDIVNDLLDISKIESGKMNL---HFEPVSLDEA 667 Q NP I+ I R L +L ++N +LD+SKIESGK+ L +FEP L Sbjct: 261 Q------NPESGIKKKIQIIRESALNLLSLINGILDLSKIESGKLELEESYFEPRKL--- 311 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQII 726 V E I+ V+ A K + + S + P + D+ ++QI +N+L NAI F+ G + Sbjct: 312 VQEVINTVEYSAKSKGLDLHASVSEQTPAAFSGDVLRLRQILINLLGNAIKFSSEGTVSL 371 Query: 727 ISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 I + S++ + ++V+D G+GM L+K PF Q S + GTGLGL + K Sbjct: 372 IVNSFRSDQSRTMLQIQVKDQGLGMDEATLKKIFSPFEQADKSTTRKFGGTGLGLSITKQ 431 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL 810 +V+ GK + S P +G++ + PL Sbjct: 432 LVELMNGKIEVESKPNEGSIFWVTLPL 458 >gi|160937422|ref|ZP_02084783.1| hypothetical protein CLOBOL_02313 [Clostridium bolteae ATCC BAA-613] gi|158439491|gb|EDP17241.1| hypothetical protein CLOBOL_02313 [Clostridium bolteae ATCC BAA-613] Length = 1114 Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 84/254 (33%), Positives = 135/254 (53%), Gaps = 9/254 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E +Q+++ L A A S KS FL+ +SH+IRTP+ AI+G + I + R R Sbjct: 583 EEEQKRSALQSALDNARAASEAKSQFLSNMSHDIRTPMNAIVGMT-AIASTRLDD--RER 639 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +E I S +L ++ND+LD+SKIESGK+++ EP +L E V+E+ LV+ A K Sbjct: 640 VMECLKKISLSSKHLLSLINDVLDMSKIESGKLSIREEPFNLAELVTESAELVRPQAEAK 699 Query: 683 RILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----E 736 + + ++ D ++QI +NILSNA +TP GG + + Sbjct: 700 HLEMDVHLKGLKNEEVVGDSLRIRQIYINILSNAAKYTPEGGSVHVEVRQEQGAGRGYGR 759 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + R DTG+GM++ + K +PF + +S R GTGLG+ + K ++D G + S Sbjct: 760 YVFRCADTGIGMSSEFMSKLFQPFERAQDSTNSRVTGTGLGMAITKNLIDLMNGDIRVES 819 Query: 797 TPAKGTLIEIIFPL 810 P +G++ + PL Sbjct: 820 RPREGSVFTVALPL 833 >gi|146309198|ref|YP_001189663.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] gi|145577399|gb|ABP86931.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] Length = 783 Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 104/364 (28%), Positives = 184/364 (50%), Gaps = 20/364 (5%) Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 GI ++ G + S N ++ GY DIL + F++F + + + + R Sbjct: 282 GIFGLDPSGHVTSWNTGAERIKGYSEADILGRHFSLFYPPQARDTAPYLALQAATREGR- 340 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAE 579 E+ ++ L ++I +S +S DI++ + + L A++ AE Sbjct: 341 -YEEEAWRQRRDGSLFWANVVITAQRDASGTLRGFSKITRDITDRRNAEAALRTAREEAE 399 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 S KS+FL+R+SHE+RTPL +I+GF+++++ R G P +I R+G +L Sbjct: 400 NASRAKSEFLSRMSHELRTPLNSILGFAQLLEMDR----GTPAQQAQVRHILRAGRHLLG 455 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--- 696 ++N++LDI++IESG++ L EP+ L + E L+ A+ I +R +P Sbjct: 456 LINEVLDIARIESGRLALSPEPLPLRPLLQEVSLLLSPQADSADIRLR--LPEELPAELC 513 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 + AD + + Q+ LN+LSNAI + GG + + ++ V L V D G G+ +LE+ Sbjct: 514 VQADRQRLVQVLLNLLSNAIKYNHPGGHVEVR-VQADSDTVTLSVIDNGPGIAAEDLERL 572 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 PF ++ + EGTGLGL L+K++++ G + STP +G+ + P + Sbjct: 573 FIPFERL-GAAASEVEGTGLGLALSKSLLEQMDGSLGVHSTPGEGSTFSLTLP---RAQV 628 Query: 817 HDCI 820 HD + Sbjct: 629 HDGL 632 >gi|302340600|ref|YP_003805806.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301637785|gb|ADK83212.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 802 Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 85/260 (32%), Positives = 144/260 (55%), Gaps = 15/260 (5%) Query: 554 YSLTMHDIS-------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 Y + DIS E ++ K A++ AE+ + KS+FLA +SHEIRTP+ IIG Sbjct: 113 YVVFAEDISLRKLYEQELREAKESSERAQEAAERATRTKSEFLANMSHEIRTPIHTIIGM 172 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 SE++ +P EY I +++L ++ND+LD SKIE+GK++L L + Sbjct: 173 SELLSETAL----DPEQQEYTEQIQFGADVLLSLINDILDFSKIEAGKLSLETITFDLYD 228 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-Q 724 +A+ +V L A++K + N++P +L D ++QI +N+ +NA+ FT G + Sbjct: 229 TAEDAVDMVSLEAHKKGLETIVYIENDVPHLLLGDPIRLRQIIVNLFNNAVKFTEKGEVE 288 Query: 725 IIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 + IS S+ +V LR VRDTG+G+ +++ + F Q+ +S + GTGLGL ++K Sbjct: 289 LRISLDDRSDGKVRLRFQVRDTGIGIAEEKVQNLFRVFTQVDSSTTRKYGGTGLGLSISK 348 Query: 783 AMVDANMGKFYIFSTPAKGT 802 + + G+ + S + G+ Sbjct: 349 NLSEMMGGRIGVESRESVGS 368 >gi|89052756|ref|YP_508207.1| histidine kinase [Jannaschia sp. CCS1] gi|88862305|gb|ABD53182.1| histidine kinase [Jannaschia sp. CCS1] Length = 716 Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 112/395 (28%), Positives = 194/395 (49%), Gaps = 37/395 (9%) Query: 434 EPEDVDTRINKRKMEIEVM---------QLCSILEATSDGIAIINREGIILSTNRAVSKL 484 E E + + K ++E+EV+ +L L AT DG AI +R+ +++ N A + Sbjct: 55 ENELLKGKTQKTEVELEVVTERALMAQRRLWDALTATEDGFAIFDRDWRLVAANPAFFLI 114 Query: 485 F--------GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 F G E ILR + + ++ E+++ EK+ + + + Sbjct: 115 FDGISDVTEGATYEAILRVATEEGIVDLQGQNADDWVEEMVA-----RWEKVPIPNV-DV 168 Query: 537 KLLS---LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 KL + +R+ K+ P SL++ DI+ + + +LS A+ AE + KS FLA +S Sbjct: 169 KLWNGAYIRLNDKQTPQGDFVSLSV-DITPNIRRERELSEARDAAEAANRAKSHFLANMS 227 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HEIRTP+ ++ +E++++ + YA+ I SG +L I+ND+LD SKIE+G Sbjct: 228 HEIRTPMNGVVSMAELLRDTAL----DEEQQMYADTIRSSGEALLVIINDILDFSKIEAG 283 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNIL 712 K+ LH E L+ V E L+Q K + +R + +P +L D ++QI N++ Sbjct: 284 KLELHEETFDLNAMVGEIFRLIQPGIASKDLELRLDYDIFLPPLLIGDRGRMRQILTNLI 343 Query: 713 SNAIHFTPSGGQI--IISTTHTSNEEVI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 NA+ FT G ++S + + + V D+GVG+ + E F Q+ + Sbjct: 344 GNAVKFTEKGHVTVRVLSVPPMDQPDALGISIVVEDSGVGIAPDQQEHVFGEFNQVEDEA 403 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 R +GTGLGL + K ++ GK ++ S +G+ Sbjct: 404 NRRHDGTGLGLAITKRLISLMGGKMWLESEVGRGS 438 >gi|288941099|ref|YP_003443339.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288896471|gb|ADC62307.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1650 Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 99/370 (26%), Positives = 174/370 (47%), Gaps = 53/370 (14%) Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLE------QNTPSVMN----------HYLT 514 +G+I N + FGY E+++ +P TV + QN +++ H++ Sbjct: 906 DGLIAFANEYALRFFGYAAEELIGRPVTVLVPTVDSTGQNLSAMVQEILANSERYVHHIN 965 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS-- 572 E L D R+ T + +++ + ++ +DI+E ++ + +L Sbjct: 966 ENLCHDGRRVWMAWTNKALYDDRGRLIGVLA-----------VGNDITERRRLEQELDRH 1014 Query: 573 --HAKKIAEKESSH--------------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 H + + ++ ++ KS FLA +SHEIRTP+ A++GF +++ Sbjct: 1015 RRHLEALVDERTAQLTEARARAEAANQAKSAFLANMSHEIRTPMNAVLGFCYLLEQHAL- 1073 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 +P + I +G +LD++ND+LD SKIE+G++ L P L E + ++ Sbjct: 1074 ---DPASADLVRKIHNAGQALLDLINDILDFSKIEAGRLELEAAPFRLSELLDTLAGIMT 1130 Query: 677 LYANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHT 732 A +K + LI T +I ++ D ++Q+ +N+L NAI FT G +I H Sbjct: 1131 AAAGDKPLELILTPPEADIEGLIGDAGRLRQVLINLLGNAIKFTARGEVELRIECLAEHD 1190 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 E+ VRDTG+G+ E+ +PF Q S R GTGLGL +++ +V G Sbjct: 1191 DAVELRFAVRDTGIGIDPESQERLFQPFTQADVSTTRRFGGTGLGLSISRQLVRLMGGTL 1250 Query: 793 YIFSTPAKGT 802 I S P +G+ Sbjct: 1251 EIESQPGQGS 1260 >gi|27366394|ref|NP_761922.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6] gi|27362595|gb|AAO11449.1| Signal transduction histidine kinase [Vibrio vulnificus CMCP6] Length = 718 Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/261 (31%), Positives = 141/261 (54%), Gaps = 11/261 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK-NQRFGPL 618 DI + K+ + LS K AE + KS FLA +SHE+RTPL A++G+++++K +QR Sbjct: 241 DIDKLKRLQQSLSETKDKAEVANRAKSIFLANMSHELRTPLNAVLGYTQLMKCDQRL--- 297 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 ++ EY I+RSG +L ++ND+LD+SKI++G + + + E E L+Q+ Sbjct: 298 -TAKHHEYLEIINRSGEHLLSLINDVLDMSKIDAGHSVVERKWFNFREVSEEINDLMQMK 356 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSN 734 A +K++ + +++P +L D+ +Q+ +N+L NAI FT G I Sbjct: 357 AMQKQLTLHCRVEDSVPHFVLGDVVKTRQVLINLLGNAIKFTYRGNVRLNIASEALQNGQ 416 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +V V D+G+G++ E+ +PF Q+ + I GTGLGL ++K V+ G+ + Sbjct: 417 HKVTFEVSDSGIGISEENQERVFQPFEQLDSD--ITQNGTGLGLSISKQFVELMGGQLVL 474 Query: 795 FSTPAKGTLIEIIFPLYDTSH 815 S +G+ + + H Sbjct: 475 KSELHRGSTFSFSLVMETSEH 495 >gi|159030650|emb|CAO88320.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 790 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 92/303 (30%), Positives = 160/303 (52%), Gaps = 16/303 (5%) Query: 523 QTLEKITLGSTKEEKLLSLRI-------IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 Q LE +T G TK +LLS+ + +I+K S + L DI+E +Q +L+ Sbjct: 223 QRLETLTSGLTKTWRLLSVPLNLTDNYPLIEK--ASGLWLLLATDITEQQQYCQELAVKN 280 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 + K +FLA VSHE ++PLTA+IG S +++ Q+ G L NPR +YA+ I RSG Sbjct: 281 ADLVHLNRLKDEFLACVSHEFKSPLTAVIGLSSLLREQKIGEL-NPRQSKYADLIYRSGR 339 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 ++ +VNDLLD++++E+G++ L V +D ++ + +R+ + +S+ +I Sbjct: 340 QLMALVNDLLDLTRLETGQLQLTLSRVKIDRLCQRVYDII-VDKYPQRLDLPSSYRLDIE 398 Query: 696 R----ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 +LAD ++Q+ +++L NA+ FT GG + I N + V DTG+G+ Sbjct: 399 SGLDYVLADEARLQQMLVHLLDNAVKFTIDGGNLGIKVNRWEN-WLAFTVWDTGIGIPEE 457 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + F Q+ + + EG GLGL L++ + + G S +G+ ++ P++ Sbjct: 458 SQHLIFQKFQQLESPFTRQFEGAGLGLVLSQKLARCHGGDLSFVSRAQEGSEFTLLLPVH 517 Query: 812 DTS 814 S Sbjct: 518 PQS 520 >gi|67925200|ref|ZP_00518568.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] gi|67852959|gb|EAM48350.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] Length = 840 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/265 (30%), Positives = 145/265 (54%), Gaps = 8/265 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+++ +Q +L+ + + K +FLA +SHE+++PLTA++G S +++ ++ G L Sbjct: 317 DVTQQQQLCQELAAKNADLVQLNRLKDEFLACISHELKSPLTAVVGLSSLLQEEKIGNL- 375 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI-SLVQLY 678 N R + YA I RSG ++ +VNDLLD++++E+G++ L F PV++ E A S+ + Y Sbjct: 376 NSRQVHYAQLIYRSGRQLMTLVNDLLDLTRLETGQLKLSFNPVNIREICQRAYHSITEKY 435 Query: 679 AN--EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 + EK + + +LAD + Q+ +++L NA+ FT +GG+I + + S+ Sbjct: 436 QSKTEKPVDFSLEIEPELEHLLADELRLHQMLVHLLDNAMKFTQTGGKIGLKVSRWSD-W 494 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + V DTG+G+ + F Q+ N + EGTGLGL L + + A+ G S Sbjct: 495 LAFNVWDTGIGIPEESQHLIFQKFQQLENPLTRQFEGTGLGLVLTQRLARAHGGDISFVS 554 Query: 797 TPAKGTLIEIIFPLY---DTSHPHD 818 +G+ ++ P + PHD Sbjct: 555 KAGQGSQFTLLLPPSPHKEQPSPHD 579 >gi|197117407|ref|YP_002137834.1| bifunctional sodium solute symporter/sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197086767|gb|ACH38038.1| sodium solute symporter and sensor histidine kinase response regulator, SSF and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 1323 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 111/421 (26%), Positives = 192/421 (45%), Gaps = 59/421 (14%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 E + RI ++ + +L I++ D ++N +G ++ NRA + G E +L K Sbjct: 680 EIMQRRIAEQALRDSERRLADIIDFLPDPTFVVNAQGAVVIWNRAAEEFTGAKAEAMLGK 739 Query: 496 P----FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 F P +++ L + +++ ++ + K II + P Sbjct: 740 AGNECAIPFYGMRRPLLLDMVLAPWRAEEIKPLYVRLVVEGGK---------IIGEGPVK 790 Query: 552 SC-----YSLTM------------------HDISEWKQEKNKLSH--------------- 573 S Y++ M DI+E K+ +++L Sbjct: 791 SASRPHAYTMAMAAPLYDSEGEVIAVIESVRDITELKEGEDELKRHRAHLEELVRERTME 850 Query: 574 ---AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 AK+ AE + KS FL+ +SHE+RTPL AI+G+++++K Q + +E + Sbjct: 851 LLVAKERAEVANQAKSAFLSSMSHELRTPLNAILGYAQILKRQDNLTDAQRQQLEI---V 907 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 G +L ++ND+LD+ KIE+ KM L L + + S+ ++ A+EK + + Sbjct: 908 RGCGEHLLSLINDVLDMGKIEAQKMELAELSFDLSALLGQVFSIAKVKADEKDLGFKYEE 967 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 N +PR + D R +KQI LN+LSNA+ +T G + H+S + DTG G+ Sbjct: 968 LNRLPRAVRGDQRKLKQILLNLLSNAVKYTHRGCVTVRVRYHSSTGVFACEITDTGTGIP 1027 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L +PF Q+ + QIR EGTGLGL + + +V G+ + S P G+ + P Sbjct: 1028 RDKLGIIFEPFVQLADGGQIR-EGTGLGLSITRRLVSLMHGQVTVESEPGAGSTFRVELP 1086 Query: 810 L 810 L Sbjct: 1087 L 1087 >gi|159897123|ref|YP_001543370.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159890162|gb|ABX03242.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 880 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 89/291 (30%), Positives = 153/291 (52%), Gaps = 27/291 (9%) Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK-------QEKNKLSHAKKIAEKESSHKS 586 ++ +L++++ L F+ LT+ + ++ Q +L A A+ KS Sbjct: 574 EQGRLVTVQDAALLLNFADMVGLTIENAFSFQNLEDLVAQRTGELREALDRAQAADRLKS 633 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 FLA +SHE+RTPL AIIGFS V+ ++ PL E I+++G +LD++ND+LD Sbjct: 634 QFLASISHELRTPLNAIIGFSTVLLDE-LSPLLVEEQREDLETINKNGRYLLDLINDILD 692 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706 +++IE+GK LH E ++ V A+ ++ N K + +R A ++PR+ D ++Q Sbjct: 693 MARIEAGKFALHREATAVLPVVQSAVDIMH-GLNSKPVTMRIDIAPDLPRMDVDPTRLRQ 751 Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEE--------------VILRVRDTGVGMTNYE 752 I +N++SNA+ FT GQI++ +E +++ V+DTG+GM Sbjct: 752 IVINLISNAVKFTDR-GQIVVRAIRRVVQEATPIGSHYLLPGDWIVISVQDTGIGMDAEA 810 Query: 753 LEKAMKPFGQIPNSQQIRG-EGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 L K + F Q+ RG G+GLGL + + +VD + G ++ S G+ Sbjct: 811 LGKLFQEFQQVHAGA--RGILGSGLGLSITRRLVDLHDGDLWVDSKVGVGS 859 >gi|269140062|ref|YP_003296763.1| hybrid sensory histidine kinase [Edwardsiella tarda EIB202] gi|267985723|gb|ACY85552.1| hybrid sensory histidine kinase [Edwardsiella tarda EIB202] gi|304559890|gb|ADM42554.1| BarA sensory histidine kinase [Edwardsiella tarda FL6-60] Length = 919 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 84/238 (35%), Positives = 138/238 (57%), Gaps = 10/238 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +V+K PL + I+Y + Sbjct: 273 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQVMKT----PLSATQ-IDYLH 327 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS N +L I+ND+LD SK+E+GK+ L P L E + E +L+ A++K + + Sbjct: 328 TIERSANNLLTIINDVLDFSKLEAGKLVLEHIPFMLRETIDEVATLLAPSAHDKGLELTL 387 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDT 744 + N++P +L D ++Q+ N+L NAI FT G +I + + E+ ++V DT Sbjct: 388 NVRNDVPEHVLGDPMRLQQVLTNLLGNAIKFTEKGNIDIRIELRSQTAQAVELEVQVHDT 447 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G++ + + + F Q S R GTGLGL + + +++ G S P KG+ Sbjct: 448 GIGISERQQSQLFQAFRQADASITRRHGGTGLGLVITQKLINEMGGDIAFHSQPHKGS 505 >gi|254416757|ref|ZP_05030507.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196176497|gb|EDX71511.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 657 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 108/399 (27%), Positives = 190/399 (47%), Gaps = 34/399 (8%) Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 + + E Q+ +E E + + K + + +V+ + DGI +I+ GI+ N Sbjct: 150 QVAKLSEKSQQDNLEKEQIKAALAKSETQFQVL-----ISKNPDGIVVIDSGGIVRFINP 204 Query: 480 AVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 A LF +++L + F V E NT +D+R T + Sbjct: 205 AALSLFSRQEDELLGQVLGFPVVGEDNT------------EVDVRT--------GTGANR 244 Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + +R++ + Y +++ DI+E KQ + + + AE + K +FLA VSHE+R Sbjct: 245 VAQMRVVEIEWQGKKGYLVSLRDITEQKQVEEERIQLLEKAEAANRIKDEFLAIVSHELR 304 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TPL I+G+S++++ ++ L + + I+R+ +L +++DLLD+S+I GK+NL Sbjct: 305 TPLNPILGWSKLLRTRK---LNQDKVDQALETIERNASLQAQLIDDLLDVSRILRGKLNL 361 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717 V L + AI ++L A K I I T + + + D ++Q+ N+LSNA+ Sbjct: 362 QTLRVDLVRVIQAAIETMRLAAAAKSIEIDTQLDSTVGFVSGDPNRLQQVVWNLLSNAVK 421 Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG-EGTGL 776 FTP GG+I + ++ I +V DTG G++ F Q NS R G GL Sbjct: 422 FTPKGGRITVRLQEIDSQAQI-QVSDTGQGISPDFFPYIFDYFRQ-ENSTTTRSVGGLGL 479 Query: 777 GLPLAKAMVDANMGKFYIFSTP-AKGTLIEIIFPLYDTS 814 GL + + +++ + G+ S +G + PL S Sbjct: 480 GLAIVRHLIELHGGRIEAESEGIGQGATFTVTLPLMPDS 518 >gi|320103390|ref|YP_004178981.1| integral membrane sensor signal transduction histidine kinase [Isosphaera pallida ATCC 43644] gi|319750672|gb|ADV62432.1| integral membrane sensor signal transduction histidine kinase [Isosphaera pallida ATCC 43644] Length = 622 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/278 (29%), Positives = 145/278 (52%), Gaps = 21/278 (7%) Query: 550 FSSCYSLTMHDISEWKQE-----------KNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 S ++ +H++ ++QE ++L+ A + + KSDFLA +SHE+RT Sbjct: 278 LSHAFNRMLHNLMAYQQELRDVNADLDRKVDELAQANLALYEMNRLKSDFLATMSHELRT 337 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PL +I+GFSEV+ + ++ +AN I SG ++L ++ND+LD++KIESGKM + Sbjct: 338 PLNSILGFSEVLAGS---DQLSEKHRRFANNIMTSGRMLLTMINDILDLAKIESGKMEVR 394 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 E S + ++++ K I ++ + +P I D VK+I N+LSNA+ F Sbjct: 395 IENCSARDLCESLAAVMRDAFEAKNIDLKCVIDDQLPLIRQDPGKVKRIVSNLLSNAVKF 454 Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG------E 772 TP GG++ + ++++V DTG+G+ + E + F Q+ Q+ + Sbjct: 455 TPEGGRVELR-VFAEGRFLVIQVEDTGIGIAPEDQEAIFEKFRQLAQPQRDDAVLTREHQ 513 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL + + + G + S P G++ + PL Sbjct: 514 GTGLGLSIVRELCRLLEGDIKLVSQPGLGSIFTVRLPL 551 >gi|260903049|ref|ZP_05911444.1| PAS domain protein [Vibrio parahaemolyticus AQ4037] gi|308108353|gb|EFO45893.1| PAS domain protein [Vibrio parahaemolyticus AQ4037] Length = 873 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 113/390 (28%), Positives = 185/390 (47%), Gaps = 40/390 (10%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE---- 502 + ++ QL + E D I I + +G I N A +L Y +E+++ K L+ Sbjct: 234 LSAKISQLAEVAEHARDTIIITHPDGTIAWVNSAFEQLTEYSLEEVVGKSPGELLQGEDT 293 Query: 503 -QNTPSVMNHYL-------TEILSLDLRQT--LEKITLGSTKEEKLLSLRIIIKKLPFSS 552 NT ++++ + EIL+ Q ++ L +E LR I + Sbjct: 294 DANTVALLSQSVRSHSPVRVEILNYTKSQRPYWVELELSPVFDENGELLRFIAVE----- 348 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-- 610 DI++ ++ + +LS A ++K + KS+FLA +SHEIRTP+ AI+G SE++ Sbjct: 349 ------RDITDRREMEKRLSSALDKSKKATQAKSEFLANMSHEIRTPMNAIMGISEILLE 402 Query: 611 -KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 +N+R PR E + +S N ++ I+ND+LD SK+E+GK+ L E L V Sbjct: 403 NENRR-----EPR--ELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVE 455 Query: 670 EAISLVQLYANEK--RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 +L A++K ++L+ A N ++ D + QI LN++ NA+ FT G ++ Sbjct: 456 SCTALCAYQADKKNLKLLVDIPLAMNTV-VVGDKGRINQILLNLIGNAVKFTDEGH--VL 512 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 S V DTG+G+ L M F Q+ S R EGTGLGL ++K ++ Sbjct: 513 LKVRESELGFDFSVTDTGIGIPEDRLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISM 572 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 G+ + S G+ L S PH Sbjct: 573 YNGELCVHSDFGNGSCFSFSLQLPKRSQPH 602 >gi|288942043|ref|YP_003444283.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897415|gb|ADC63251.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1450 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 115/383 (30%), Positives = 192/383 (50%), Gaps = 32/383 (8%) Query: 444 KRKMEIEVMQLCSILEATSDGIA----IINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 +R++E V Q S L +++ +A ++R GI +S N + F Y +++ R+ Sbjct: 548 QRELESLVEQRTSELRHSNERLAHTQFAMDRVGIGISWNSVDTGHFLYVNDELCRQLGYT 607 Query: 500 FLE--QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL-------------LSLRII 544 + E T S +NH E +RQ +++ GS++ +L +S I Sbjct: 608 YEELLSLTVSDVNH---EYPPAAVRQVADELR-GSSRCLRLETRHWRKDGSTYPVSTTIY 663 Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 + + P + DI+ K + +L AK+ AE+ + KS+FLA +SHEIRTP+ AII Sbjct: 664 LHQAPGEEWFIAFFEDITARKLVEAELLRAKEQAEEATQAKSNFLANMSHEIRTPMNAII 723 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G + + PL + R +Y + RS +L I+ND+LD SKIE+G++++ L Sbjct: 724 GMAHLALQT---PL-DARQRDYIEKVHRSAEALLGILNDILDFSKIEAGRLDIEQIDFRL 779 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG 723 ++ + +LV L A +K + + +P ++ D + QI N+ +NA+ FT GG Sbjct: 780 EDVMDNLANLVGLKAEDKGLELMFDLPPEVPTALIGDALRLGQILTNLGNNAVKFTEPGG 839 Query: 724 QIIISTTHTSN--EEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 +I+I + + V L VRDTG+GMT + + + F Q S R GTGLGL Sbjct: 840 EILIGVRVEAEGADWVCLGFEVRDTGIGMTPEQCGRLFESFSQADMSTTRRYGGTGLGLA 899 Query: 780 LAKAMVDANMGKFYIFSTPAKGT 802 + K + + G+ + S P GT Sbjct: 900 ICKYLTELMGGEIGVESEPGAGT 922 >gi|253998422|ref|YP_003050485.1| histidine kinase [Methylovorus sp. SIP3-4] gi|253985101|gb|ACT49958.1| histidine kinase [Methylovorus sp. SIP3-4] Length = 1151 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/253 (29%), Positives = 136/253 (53%), Gaps = 6/253 (2%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L + +I +Q +L A+++AE+ + KS ++ +SHE+RTPL +I+G+++++ N Sbjct: 666 GLLLREIELHRQTDAELQQARQVAEQANQAKSRYITGISHELRTPLNSILGYAQLLDNDV 725 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P I I RSG +L ++ LDI++IESGK+ +P+ L E + + + + Sbjct: 726 SIPAARQPAIR---VIRRSGEHLLSLIEGTLDIARIESGKLTFDIKPLRLPEFIQQVVDM 782 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +L A K + ++P ++ AD + + QI +NIL NA+ FT GG ++ + Sbjct: 783 FELQARNKGLTFSYQLTGDLPDMVRADQKRLSQILINILGNAVKFTRQGG--VVFRLRYA 840 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E ++ + DTG G+ EL++ +PF + + GTGLGL ++K + G+ Sbjct: 841 RELAVIEIEDTGPGILKEELDEIFEPFARGSAANNSTVAGTGLGLTISKMLTQLMGGELS 900 Query: 794 IFSTPAKGTLIEI 806 + S GT+ +I Sbjct: 901 VRSVVGSGTVFQI 913 >gi|15598658|ref|NP_252152.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1] gi|9949605|gb|AAG06850.1|AE004767_1 probable sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1] Length = 919 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/257 (31%), Positives = 140/257 (54%), Gaps = 14/257 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL-- 618 I+ K+E + A + A E+ KS FLA++SHEIRTPL ++G +++++ PL Sbjct: 384 INALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDT---PLDR 440 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 G Y+E I SG+ ++ ++ND+LD ++IESGK++L L+E +S+ ++L Sbjct: 441 GQAAYVET---IASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQ 497 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TS 733 A EKR+ + +PR L D ++Q+ +N+LSNA+ FT G + + Sbjct: 498 AVEKRLHLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAE-GHVAVRVQRRFDEGG 556 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E ++ V D+G+G++ + + F Q +S R G+GLGL +++ +V G+ Sbjct: 557 RERLLYSVSDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIE 616 Query: 794 IFSTPAKGTLIEIIFPL 810 + S P KGT + PL Sbjct: 617 VSSEPGKGTRFSVDLPL 633 >gi|281205977|gb|EFA80166.1| histidine kinase [Polysphondylium pallidum PN500] Length = 1441 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 116/395 (29%), Positives = 198/395 (50%), Gaps = 41/395 (10%) Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + + RK+ E++ IL + ++N +G+I+ A++++ G+ L K ++ Sbjct: 738 SELEGRKIREELILSEIILNQFPSCMFLVNNQGVIVREFGAINQIMGFD-STCLGKNISM 796 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL---LSLRIIIKKLPFSSCYSL 556 F E+ + + I S +++ITL +++ +SLR I + + Sbjct: 797 F-EKGKEEIYQALHSLIKSGTKDTVVKEITLTRMDDKEFFTEVSLREIFDQNGMPLGIMV 855 Query: 557 TMHDISEWKQ-------------EKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + DI+E KQ KNK L A+ A K KS FLA +SHEIRTP+ Sbjct: 856 VIRDITESKQIQHSLEEVNHQLSCKNKELVEARDRALKAIQMKSKFLATISHEIRTPMNG 915 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL---HF 659 +IG +E++ + NP E A+ I +SG L+L I +D+LD SKIE+ K+ L F Sbjct: 916 VIGMAEMLLTSKL----NPEQYEIADTIYKSGELLLSITSDILDFSKIEASKLELEMIEF 971 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHF 718 + + E V +S+ + +K+I I F ++P +++ D ++QI LNI NAI F Sbjct: 972 DFIGCIEGVFNTLSI----SLDKKIEIILLFEKDVPTKLIGDPNRLRQIILNIGHNAIKF 1027 Query: 719 TPSG---GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 T G G I + + ++ + ++DTG+G+ + + +PF Q+ +S + G+G Sbjct: 1028 TDKGHVFGHISVVSRERGTVQICVSIQDTGIGIEPEKRDMLFEPFSQLDSSTTRKYGGSG 1087 Query: 776 LGL----PLAKAMVDANMGKFYIFSTPAKGTLIEI 806 LGL PLAK M D ++ +S P KG++ I Sbjct: 1088 LGLAICSPLAKLM-DGDVS--LDWSQPGKGSIFSI 1119 >gi|222110175|ref|YP_002552439.1| multi-sensor hybrid histidine kinase [Acidovorax ebreus TPSY] gi|221729619|gb|ACM32439.1| multi-sensor hybrid histidine kinase [Acidovorax ebreus TPSY] Length = 1611 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 139/258 (53%), Gaps = 8/258 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T D+S+ ++ + +L AK++AE+ ++ KS FLA +SHEIRTPL AIIG S + Sbjct: 853 TFVDVSDRQRAEVELRRAKELAEETAALKSRFLANMSHEIRTPLNAIIGMSHLALKSGL- 911 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + R Y + ++G +L ++ND+LD SKIE+GK+ + P +LD + +V Sbjct: 912 ---DARQSGYVVRMQQAGQHLLGVINDILDFSKIEAGKLVVERSPFALDRMLEGVADVVG 968 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 A K + + A ++P+ ++ D + QI +N +NA+ FT G +++ Sbjct: 969 FKAAAKGLELVLDVAPDVPQHLVGDALRLGQILINFANNAVKFTEQGEIHLLVRLERNEG 1028 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 V LR VRDTG+G+ ++++ + F Q S R GTGLGL ++K++ + G+ Sbjct: 1029 ARVWLRFEVRDTGIGIAPQQMQRLFQSFEQADTSTTRRYGGTGLGLAISKSLAELMGGEV 1088 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S G+ + PL Sbjct: 1089 GVRSELGHGSAFWVTVPL 1106 >gi|172060667|ref|YP_001808319.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] gi|171993184|gb|ACB64103.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] Length = 1240 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 133/228 (58%), Gaps = 6/228 (2%) Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 S KSDFLAR+SHEIRTP+ ++G +E+++ R + ++ + + RSG +L I++ Sbjct: 561 SAKSDFLARMSHEIRTPMNGVLGMTELLQRTRL----TSKQRKFVDTVYRSGQTLLVIID 616 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADL 701 D+LD SKIE+GK+ L +L + + + ++L++ A K + + A+++P R+ D Sbjct: 617 DILDFSKIEAGKLTLERIDFNLHQLLDDVVALMEPNARRKELELVYQRADSVPQRMRGDP 676 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 ++QI N+L NAI FT G + +S ++ + ++ ++ D+G+G+ + +PF Sbjct: 677 VRLRQILTNLLGNAIKFTEHG-HVALSAEYSDDGRIVFKIADSGIGIAPDVAAQLFRPFQ 735 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q +S + GTGLGL +++ + + G + STP KG++ + P Sbjct: 736 QADSSTARKYGGTGLGLAISRQLAEMMGGTLALDSTPGKGSVFTVTTP 783 >gi|220921597|ref|YP_002496898.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium nodulans ORS 2060] gi|219946203|gb|ACL56595.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium nodulans ORS 2060] Length = 830 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 84/281 (29%), Positives = 146/281 (51%), Gaps = 13/281 (4%) Query: 539 LSLRIIIKKLPFSSCYS---------LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 L+ R+ +K C + LT D++ + L+ + E+ + + +F+ Sbjct: 543 LACRLALKDGTVLDCAAQPLPDGATLLTHIDVTASVNVERALTEKNEALERTARLRDEFV 602 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 VS+E+R+PLT IIGF+E++ ++ G L N R EYA++I RS +L I+ND+LD++ Sbjct: 603 HHVSYELRSPLTNIIGFTELLGDETVGAL-NTRQREYADHIMRSSAALLVIINDILDLAS 661 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709 I++G M L E V + ++ A+ V+ E I + +I +AD + ++QI Sbjct: 662 IDAGSMELTREVVDVQATIAAAVRGVEDRLAEAAITLDRDVPADIGGFVADGKRIRQILF 721 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 N+LSNAI F+ GQ ++ ++ E+ V D G GM + + F ++ Sbjct: 722 NLLSNAIGFSAP-GQTVVVQARKTDREIAFAVIDQGRGMPPEVVARVFDRFES--HTLGT 778 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 R G GLGL + ++ V+ + G+ I S P +GT + FP+ Sbjct: 779 RHRGVGLGLSIVRSFVELHGGRIDIASAPGQGTKVTCTFPI 819 >gi|320103563|ref|YP_004179154.1| integral membrane sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] gi|319750845|gb|ADV62605.1| integral membrane sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] Length = 687 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 138/251 (54%), Gaps = 16/251 (6%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + +LS A ++A++ + KS FLA VSHEIRTPLTAI+G + ++ L +P+ Sbjct: 224 EQELSRAWRLADEANEAKSLFLACVSHEIRTPLTAILGHTSIL-------LEDPKVRRRL 276 Query: 628 NY-------IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 Y I RSG + ++ND++D+SK+E + + EPV++ +AV E +L++ A+ Sbjct: 277 GYRVKRLEIIKRSGEHLSVLINDIIDMSKVERNLIRVDPEPVAIAQAVRETAALIRPRAS 336 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K + + FA IP ++ D ++QI +N+L NA+ FT GG + + L Sbjct: 337 AKGLSLGVEFAGPIPEVVRVDPVRLRQILVNLLGNAVKFTTRGGVTLRVEYLRERHILAL 396 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 + DTG G+ + LE+ +PF ++ N+ G G GLGL ++K + + G + S P Sbjct: 397 SIHDTGRGLEPHHLERLFRPFTRLGNTDDPEG-GAGLGLAISKRLAELLGGDITVESQPG 455 Query: 800 KGTLIEIIFPL 810 +G+ + P+ Sbjct: 456 RGSCFTLELPV 466 >gi|297569313|ref|YP_003690657.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296925228|gb|ADH86038.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 597 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/256 (32%), Positives = 139/256 (54%), Gaps = 13/256 (5%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y+ T+ SE ++ +L A E+ S KS+FLA +SHE+RTP+ AI GF++++ + Sbjct: 180 YARTLE--SEIARQTAELRKANARLEESSRLKSEFLANMSHELRTPMNAITGFAQLLADT 237 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + EY I +S +L ++ND+LD++KIE+G++ L LDE + + Sbjct: 238 SL----DTTQQEYCRTIRQSSATLLALINDILDLAKIEAGRLELEIVAFDLDELLESVAA 293 Query: 674 LVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGG-QIIISTT- 730 + L EK I I+ +PR L D ++Q+ N++ NA+ FT SGG ++++ + Sbjct: 294 MFSLSIREKGIAIQVRRDQGLPRAYLGDSHRLRQVLTNLVGNAVKFTESGGVELLVESVA 353 Query: 731 --HTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + +E LR VRD+G+G+ + LE + F Q S R GTGLGL + + +V+ Sbjct: 354 PPEAARQEQWLRFVVRDSGIGIPPHRLEAIFEKFTQADGSTTRRFGGTGLGLAICRQLVE 413 Query: 787 ANMGKFYIFSTPAKGT 802 G+ + S +G+ Sbjct: 414 LMGGRIEVESLEGQGS 429 >gi|170741231|ref|YP_001769886.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168195505|gb|ACA17452.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 873 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 107/391 (27%), Positives = 203/391 (51%), Gaps = 35/391 (8%) Query: 436 EDVDTRINKRKMEIEVMQ--LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 D++ R+ R E+ + L L+A G+ +++ GI+ TNR + L G + Sbjct: 333 RDLERRVAVRTRELAGKEALLTMTLDAMDQGLVMVDGAGIVAVTNRRAADLLGLDPAFLA 392 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLD--LRQTLEKITL---GSTKEEKLLSLRII-IKK 547 +P + + E +LD +R L L G+ E + +++ + Sbjct: 393 SRPSCEAMREAL-----QARGEFAALDPAIRDGLRDRDLDRIGARYERVRPNGQVLEVAN 447 Query: 548 LPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEIRTP 599 + L ++ D++ K + L+ A ++A++ K+DFLA +SHEIRTP Sbjct: 448 TATADGGILRIYTDVTARKAVETALAEAHRLAQQARRAAEAASAAKTDFLATMSHEIRTP 507 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR---SGNLVLDIVNDLLDISKIESGKMN 656 LTA++G+++++ + + E A + R +G + IV+D+LD S+IE+G+++ Sbjct: 508 LTAVLGYADLLMAR------SDLEAEQARLVGRIVTAGEALRTIVDDVLDFSRIEAGRVD 561 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNA 715 L P SL + + EA++LV+ A+ K + I + + PR++ D+ ++QI LN+L+NA Sbjct: 562 LAPRPFSLADLIEEALALVRPEADRKGLPIAVAIEPGLPPRLVGDVDRLRQILLNLLNNA 621 Query: 716 IHFTPSGG-QIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 + FTP+G + ++ T E +++ VRDTG+G+ + + + F Q+ S Q + Sbjct: 622 VKFTPAGSIGLAVARDPTGPAEGRGLLISVRDTGIGIPADKHARLFERFSQVDGSIQRQY 681 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GTGLGL +++ +V+A G+ + S +G+ Sbjct: 682 GGTGLGLAISRRLVEAMHGRIGVESREGEGS 712 >gi|162453233|ref|YP_001615600.1| hypothetical protein sce4957 [Sorangium cellulosum 'So ce 56'] gi|161163815|emb|CAN95120.1| torS [Sorangium cellulosum 'So ce 56'] Length = 669 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 139/256 (54%), Gaps = 3/256 (1%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ D++ + +L A+ IAE SS KS+FLA +SHE+RTPL AI+GF++++ R Sbjct: 266 TLWDMTGDVHREEELRKARGIAEAASSAKSEFLASMSHELRTPLNAILGFAQLLHRDRKT 325 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + R E ++ + G +L +++D+LD+S+IE+G++ + EPV++ E + E + + Sbjct: 326 PLTD-RQKERIEHVLKGGEHLLKLIDDILDLSRIEAGRVTVSIEPVNVPEVLIEVKTTLD 384 Query: 677 LYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A I I + +P+I AD QI +N SNAI + GG+ I+ + + Sbjct: 385 PMAQRAGIEIALAPLPAELPKITADRTRFAQILMNYGSNAIKYGRRGGRATIAVSMPEDG 444 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V + V D G+G+ + K +PF Q + EGTG+GL + K + + G Sbjct: 445 VVKICVIDNGIGIPQEQHAKIFQPF-QRAGQETGPIEGTGIGLAITKRLAELMGGGVGFA 503 Query: 796 STPAKGTLIEIIFPLY 811 S P +G+ I P + Sbjct: 504 SIPGEGSEFWIELPAH 519 >gi|313200497|ref|YP_004039155.1| histidine kinase [Methylovorus sp. MP688] gi|312439813|gb|ADQ83919.1| histidine kinase [Methylovorus sp. MP688] Length = 1136 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/253 (29%), Positives = 136/253 (53%), Gaps = 6/253 (2%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L + +I +Q +L A+++AE+ + KS ++ +SHE+RTPL +I+G+++++ N Sbjct: 651 GLLLREIELHRQTDAELQQARQVAEQANQAKSRYITGISHELRTPLNSILGYAQLLDNDV 710 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P I I RSG +L ++ LDI++IESGK+ +P+ L E + + + + Sbjct: 711 SIPAARQPAIR---VIRRSGEHLLSLIEGTLDIARIESGKLTFDIKPLRLPEFIQQVVDM 767 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +L A K + ++P ++ AD + + QI +NIL NA+ FT GG ++ + Sbjct: 768 FELQARNKGLTFSYQLTGDLPDMVRADQKRLSQILINILGNAVKFTRQGG--VVFRLRYA 825 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E ++ + DTG G+ EL++ +PF + + GTGLGL ++K + G+ Sbjct: 826 RELAVIEIEDTGPGILKEELDEIFEPFARGSAANNSTVAGTGLGLTISKMLTQLMGGELS 885 Query: 794 IFSTPAKGTLIEI 806 + S GT+ +I Sbjct: 886 VRSVVGSGTVFQI 898 >gi|117926231|ref|YP_866848.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609987|gb|ABK45442.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1118 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 124/498 (24%), Positives = 228/498 (45%), Gaps = 53/498 (10%) Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397 GN +ANP+ L + Y+ DD + LL P L + + R +C + Sbjct: 494 QGNFIFANPACLRMMGYR--DDRQ-------LLGKPMLEIVSCCSSQFVRRGKGSCPISQ 544 Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQ-------FPENMPQNG------IEPEDVDTRI-N 443 + + E L F +A+ + + QNG + D+ R+ N Sbjct: 545 ILKTGLPNHAEGEL------FRRADGSFFSTEFWSHPIQQNGELVGAVVTFIDISQRVLN 598 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 + ++ ++ +I E+ + I++ G++ N A FG L V + + Sbjct: 599 QTALKASELKYRTIFESVPTPLLILDTSGVVRDVNSAHQSTFGRFAGGSL---MGVSIRE 655 Query: 504 NTPSVMNHYLTE-ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---------C 553 + P V L E L+L + + T E + ++ ++ +PF + Sbjct: 656 H-PGVAGSLLAESFLALAKGEPMPLQQASYTMEAEGEAIHFNVRGVPFVTRDGEGREDLQ 714 Query: 554 YSLTMHD-ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 +L +H+ I++ KQ + KL A + A+ + K DFLA +SHEIRTP+ ++G +E++ Sbjct: 715 GALVIHENITDLKQTELKLRKAVEEADCATHAKGDFLAVMSHEIRTPMNLVVGMAELLLE 774 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 N Y + ++G+ +L ++N++LD++K++ G++ L EP + + E Sbjct: 775 TDV----NAEQKHYLEKLQKAGDTLLSLINNILDLTKLDEGQLKLLDEPFAPQALLDEVS 830 Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 ++ L A K + + +P R+L D +KQ+ LN+LSNA+ FT G I +S T Sbjct: 831 GIISLAAEAKGLTLSCEIQEGVPERVLGDSVRIKQVLLNLLSNALKFTQQGF-IRLSLTV 889 Query: 732 TSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 E ++ V D+G+G+ +Y L++ + F Q +S R G+GLGL + K +V Sbjct: 890 EGAEGAQQLCYAVSDSGMGIPDYHLDEVFERFSQGDSSMTRRFGGSGLGLAICKKLVILM 949 Query: 789 MGKFYIFSTPAKGTLIEI 806 G+ + S G + +I Sbjct: 950 QGQIQVSSQVDVGAIFQI 967 >gi|255034075|ref|YP_003084696.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254946831|gb|ACT91531.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1287 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 109/383 (28%), Positives = 189/383 (49%), Gaps = 34/383 (8%) Query: 443 NKRKMEIEVM----QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PF 497 ++++ E+E++ + S+ ++TSD + + + G L N A K+FG D+L K P Sbjct: 621 HRKQAEVEILNSEAKFRSLYDSTSDAVILFDHTGY-LDCNDAALKMFGIDSVDMLMKMPM 679 Query: 498 TVFLEQNTPSVMNHYLTEILSLD----LRQTLEKIT---------LGSTKEEKLLSLRII 544 N P + E D +R+ E T G +KE + + + Sbjct: 680 GDLSGLNEPGM------EAARNDGCRHVREVYENGTHNFEWKYKRFGESKESFIAEVLLN 733 Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 + K+ + DI+ K+ + +L A++ AE S KS+FLA +SHEIRTPL ++ Sbjct: 734 LMKVNGKEIIQAVIRDITIRKRAELELLEAREHAEAASKLKSEFLANMSHEIRTPLNGVV 793 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 GF++++ + +Y + + +S N ++DI+ND+LD SKIE+GK+ L E L Sbjct: 794 GFTDLLMKTNL----DETQQQYMSMVFQSANSLMDIINDILDFSKIEAGKLELTPEKTDL 849 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723 E +V A +K + + + +IPR + D ++QI +N+LSNA+ FT G Sbjct: 850 LEICGRVADMVTYQAQQKHLEMLLNIPADIPRFVWCDSVRLRQILVNLLSNAVKFTIKGE 909 Query: 724 -QIIISTTH-TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 ++ I + S + R VRDTG+G+ + + F Q +S R GTGLGL Sbjct: 910 IELKIELLNKVSGLDYTFRFSVRDTGIGIDPQNQRRIFEAFSQEDSSTTKRFGGTGLGLT 969 Query: 780 LAKAMVDANMGKFYIFSTPAKGT 802 ++ +++ + + S KG+ Sbjct: 970 ISNSLLGLMESRLQLTSELEKGS 992 >gi|78222916|ref|YP_384663.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens GS-15] gi|78194171|gb|ABB31938.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens GS-15] Length = 1313 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 133/242 (54%), Gaps = 9/242 (3%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A+ AE+ + KS+FLA +SHEIRTPL AIIG S+++ R + Y + + + Sbjct: 815 ARDRAEQANRAKSEFLAGMSHEIRTPLNAIIGMSDLLAETRL----DGEQSGYLSVVHSA 870 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G + ++ND+LD+SKIE+G + L P SL + + + + + A+ K + S + Sbjct: 871 GETLQGLINDILDLSKIEAGMLQLDSVPFSLRDCIRQLTDITSVKASSKGVTYSFSVKSA 930 Query: 694 IP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST--THTSNEEVILR--VRDTGVGM 748 +P ++ D ++Q+ +N++ NA+ FT SGG +++ S+ EV++R V DTG+G+ Sbjct: 931 VPDWLMGDSLRLRQVLINLVGNAVKFTDSGGSVLLEVEPVQQSDAEVLIRFSVADTGIGI 990 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L+ + F Q +S R GTGLGL +++ + G+ + ST KG+ Sbjct: 991 APEKLDTIFESFSQADSSTTRRYGGTGLGLAISRHLAGMMGGEIGVESTVGKGSCFRFTV 1050 Query: 809 PL 810 P Sbjct: 1051 PF 1052 >gi|317154349|ref|YP_004122397.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316944600|gb|ADU63651.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 1100 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/262 (31%), Positives = 137/262 (52%), Gaps = 17/262 (6%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E K +L AK+IAE + KS+FLA +SHEIRTPL I G +++ + Sbjct: 703 ERKISAQQLVKAKEIAESANRAKSEFLANMSHEIRTPLNGIFGMLQLVGGTKLDD----- 757 Query: 623 YIEYANYID---RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 E +Y+D SG +L ++ND+LD SK+E+G + + EP+ + V++ + + A Sbjct: 758 --EQRDYVDTALTSGRSLLRVINDVLDFSKMEAGMLTVESEPLDIRHVVADVLENFSVQA 815 Query: 680 NEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--- 735 EK++++ ++ P IL+D ++QI N++ NA+ FTPSG + S ++ Sbjct: 816 AEKQLVMAVETDASVPPLILSDEARIRQILFNLVGNAVKFTPSGRITVESWVQRADTTDQ 875 Query: 736 --EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + L V DTG+G+ L F Q+ S + GTGLGL + K +VD G+ Y Sbjct: 876 TMRLFLSVSDTGIGIPENMLGSVFSAFSQVDGSHTRKYGGTGLGLGIVKRLVDLMGGEIY 935 Query: 794 IFSTPAKGTLIEIIFPLYDTSH 815 + + +GT I + + + S Sbjct: 936 V-ESDGEGTRIHLFLKVREASE 956 >gi|146283013|ref|YP_001173166.1| sensor histidine kinase/response regulator GacS [Pseudomonas stutzeri A1501] gi|145571218|gb|ABP80324.1| sensor histidine kinase/response regulator GacS [Pseudomonas stutzeri A1501] Length = 906 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+++++ PR +Y Sbjct: 257 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTQLLQKSDL----TPRQQDYLGT 312 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRT 688 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ Sbjct: 313 IEKSADSLLGIINEILDFSKIEAGKLVLDTIPFNLRDLIEDTLTILAPAAHTKQLELVSL 372 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 + + ++ D +KQ+ N++SNAI FT G + + N E + + V+DTG Sbjct: 373 VYRDTPLSLVGDPLRLKQVLTNLISNAIKFTNEGTIAVRAMVEDDNAERAQLRISVQDTG 432 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+T+ +L + F Q NS + GTGLGL ++K +++ G+ + S P +G+ Sbjct: 433 IGLTDQDLRALFQAFSQADNSMSRQPGGTGLGLVISKRLIEQMGGEIGVDSIPDEGS 489 >gi|153870733|ref|ZP_02000072.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152072802|gb|EDN69929.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 922 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/238 (34%), Positives = 135/238 (56%), Gaps = 17/238 (7%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHE RTPL I+G+++++++ R E + I SGN +L +VND+ Sbjct: 371 KSTFLANISHEFRTPLNCILGYTQLLQDDN---TLTSRQKEDISVIQHSGNYLLKLVNDI 427 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRS 703 L++SK+E G + LH L + + + + Q+ A +K I + +N+P ++ AD + Sbjct: 428 LELSKLEKGNIELHPNDFRLGSFLHDIVKMFQISAEQKGISLIFQTLSNLPTVIHADEKR 487 Query: 704 VKQIALNILSNAIHFTPSGG-------QIIISTTHTSNE---EVILRVRDTGVGMTNYEL 753 ++QI +++LSNAI FT GG + + + + SN +V ++ DTG+G++ L Sbjct: 488 LRQILIHLLSNAIKFTEQGGVTFQVKSEKLPAQSEVSNLPPFKVYFQIADTGIGISTEAL 547 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT--LIEIIFP 809 EK PF Q + + EGTG+GLP+ K +++ G+ S P KG+ E+IFP Sbjct: 548 EKVFLPFEQASEWRH-KSEGTGVGLPITKQLIEMMGGELLFESHPGKGSQFWFELIFP 604 >gi|262275446|ref|ZP_06053256.1| putative sensory box sensor histidine kinase/response regulator [Grimontia hollisae CIP 101886] gi|262220691|gb|EEY72006.1| putative sensory box sensor histidine kinase/response regulator [Grimontia hollisae CIP 101886] Length = 877 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 102/370 (27%), Positives = 181/370 (48%), Gaps = 20/370 (5%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TVFLEQ 503 +++ ++ L I+E + + I + G + +N+A+ LFG+ + K F T+ + Sbjct: 236 KQLAVQNKMLAEIVEQSHEAYLITDLSGYVSLSNKALDNLFGFRDNEACDKDFQTLLFGE 295 Query: 504 NTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561 NT + L + + L T+ E +++ + ++ I+ + Y L + D+ Sbjct: 296 NTAEEAAYQLRDAMQLGQSITVRAECLSIDGRAVQTEITAFPIVNNAGVNDRYVLIVRDV 355 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E + + L HA A + + KS FLA +SHEIRTP+ IIG SE+++ P Sbjct: 356 HEQLEFEKALKHAADTAHQATRAKSQFLANMSHEIRTPMNGIIGVSEMLRESSL-----P 410 Query: 622 RYIEYANYID---RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + E ++D S +L ++ND+LD SK+E K+ L E L V E S+V + Sbjct: 411 K--EQKGFVDIIYSSAKSLLQLINDILDFSKLEEKKLKLSEETFCLRTMVEETASMVAIS 468 Query: 679 ANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----- 732 A+ K +L+ +I +++D ++Q+ N+L NA+ FT G I IS Sbjct: 469 ASRKELLVVVDIPPDINTLVISDELRLRQVFNNLLGNAVKFTEH-GYIRISVRAEPKPGD 527 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++ L + DTG+G+ +L K F Q+ +S R +GTGLGL + K+++ + Sbjct: 528 TSSTYTLTIEDTGIGIPEDKLSDITKAFEQVNSSTSRRYKGTGLGLSITKSLLSLFNSEL 587 Query: 793 YIFSTPAKGT 802 + S KG+ Sbjct: 588 EVVSEYNKGS 597 >gi|171060844|ref|YP_001793193.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix cholodnii SP-6] gi|170778289|gb|ACB36428.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix cholodnii SP-6] Length = 490 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 103/358 (28%), Positives = 168/358 (46%), Gaps = 9/358 (2%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-EQNTPSVMNHYLTE 515 +LE+T DGI ++N G I+ N +LFGYP + + L E+ + + H Sbjct: 135 LLESTPDGIVMVNPTGHIVIANSQAERLFGYPPGGLRGRSVDQLLPERYRHAHVAHRSQY 194 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLT-MHDISEWKQEKNKL 571 L R + L + + I I P + + ++ + DISE K+ + L Sbjct: 195 FLQPRKRAMGSGLDLAGLRRDGT-EFPIEISLGPLRTEDGAFVMSAIRDISERKRFERAL 253 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 + K+ FLA +SHE+RTPL AIIGF+ + + GPL P + Sbjct: 254 QEKNVELAAANEAKTRFLANMSHELRTPLNAIIGFTGTLLMRLPGPL-TPDQERQLRTVQ 312 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 SG +L ++NDLLD++KIE+GK +H E + + + E +S + A K + + S Sbjct: 313 ASGRHLLALINDLLDVAKIEAGKAQIHLEMLDVGALLHEVVSTLHPQAVAKGLALTLSVP 372 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 + +D R + QI +N++ NAI FT +G + E+ V DTG+G+ Sbjct: 373 EPALQCESDRRMLNQIVINLIGNAIKFTDAGSIHVGLRARAGGFEI--EVTDTGIGIGTD 430 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + K F ++ +SQ EGTGLGL L++ + G + S +G+ + P Sbjct: 431 DQAKLFGAFSRVVSSQGRVAEGTGLGLHLSQKLAALLGGTIDVRSEAGRGSCFSLRVP 488 >gi|197119641|ref|YP_002140068.1| PAS domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197089001|gb|ACH40272.1| sensor histidine kinase response regulator, PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 919 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 103/377 (27%), Positives = 173/377 (45%), Gaps = 42/377 (11%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-------KPFTVFLEQNTPSV 508 SI E + GI + G ++ NR + GY E++L P EQ + Sbjct: 308 SIFEQAAVGICHLTLSGELIRINRRFCDILGYEQEELLGWSLEQTIHPDDREAEQRQAAR 367 Query: 509 MNHYLTEILSLDLRQT-----------LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 + + S+++RQ + + G E K L+ Sbjct: 368 LLSREIDNYSIEIRQMRHDDTPVWVNLTKSLVCGPKGEPKYLAG---------------I 412 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D++ +E +L H + + + S KS FLA + HEIRTPL A++G S + Sbjct: 413 IEDVTA-NREAEELRHERDLVQAASRAKSQFLANMGHEIRTPLNAVMGLSRLALKTEL-- 469 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + + Y I S +L+I+ND+LD SK+E+GK+ L ++L E + + Q Sbjct: 470 --DRKQRGYLEKIGSSSRTLLNIINDILDFSKMEAGKLELEKTDLNLYEVLGNISDMHQS 527 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNE 735 A EK I R A ++P +++ D + Q+ N+++NA+ FT G ++ I E Sbjct: 528 KAQEKGIEFRVRLAPDLPNKLVGDPLRLTQVLNNLIANAVKFTEKGEVVVAIKPLRREEE 587 Query: 736 EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 EV++ V+DTG+G+ ++ K PF Q +S R GTGLGL +++ +V+ G+ Sbjct: 588 EVVVHFCVQDTGIGIAPEQMGKIFTPFTQADSSTTRRYGGTGLGLSISRQLVELMGGELQ 647 Query: 794 IFSTPAKGTLIEIIFPL 810 + S P G+ PL Sbjct: 648 VESVPGSGSSFSFTVPL 664 >gi|126661522|ref|ZP_01732570.1| hybrid sensory kinase [Cyanothece sp. CCY0110] gi|126617188|gb|EAZ88009.1| hybrid sensory kinase [Cyanothece sp. CCY0110] Length = 611 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 87/257 (33%), Positives = 142/257 (55%), Gaps = 21/257 (8%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E K++ +L AK+ AE + KS F+A +SHE+RTPL AI+GFS+++K R L Sbjct: 117 EVKRQTEELEIAKEKAEVANEAKSAFIANMSHELRTPLNAILGFSQIMK--RSSTLSQEE 174 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 E N I RSG+ +L ++N++LD++KIE+GKM L+ L + E L+ L AN K Sbjct: 175 K-ENINIIGRSGDYLLTLINNILDLAKIEAGKMTLNPCDFDLYSCLQEVEDLLHLKANNK 233 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII-------------- 727 + + + ++P+ I D ++Q+ +N+++NAI FT GG + Sbjct: 234 GLKLEINHDQDVPQYINTDETKLRQVLINLINNAIKFTSEGGVFVQVRNQPSDIKDSNLN 293 Query: 728 --STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 S + T+N+ + + V+DTGVG+ EL+K + F Q + ++ EGTGLGL +++ V Sbjct: 294 NDSKSLTNNDYINITVQDTGVGIAAGELDKLFEAFAQTESGKK-SSEGTGLGLAISRKFV 352 Query: 786 DANMGKFYIFSTPAKGT 802 G + + GT Sbjct: 353 QLMGGDITVTTEVESGT 369 >gi|257486235|ref|ZP_05640276.1| PAS [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 1189 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 111/373 (29%), Positives = 181/373 (48%), Gaps = 39/373 (10%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT---------- 505 +++E T I + +REG++ N + ++F EDI+ K T + N Sbjct: 567 ALVEGTPHPIYVRDREGMLRMCNDSYLRVFSAQREDIIGKSATEGVLGNAFEAREYAADY 626 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH------ 559 VM IL LR ++T I LPF Sbjct: 627 QRVMASNTALILDRPLRIGDRQMT-------------IYHWILPFRDSLGEVQGIIGGWI 673 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DISE +Q L AK+ A+ S KS FLA +SHEIRTP+ A+IG E+ +K G L Sbjct: 674 DISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHGEL 733 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + IE A S N +LD++ D+LDI++IESG+++L+ E +L V + + Sbjct: 734 -DRSAIEVAY---SSANDLLDLIGDILDIARIESGRLSLNPERANLRRLVESVLRVFDGL 789 Query: 679 ANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE 736 A +K + + + I +L D KQI N++SNAI FTP G +I++ + + + Sbjct: 790 ARQKDLDLVLELDSRINADVLIDPLRFKQILSNLVSNAIKFTPMGRIKIVLQAAESPDPQ 849 Query: 737 VI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ + V+D+G+G++ + ++ +PF Q N+ Q+ G GLGL + +++ G Sbjct: 850 LLHLHITVQDSGIGISAEDQQRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMMGGNLS 909 Query: 794 IFSTPAKGTLIEI 806 + S P +GT I + Sbjct: 910 LDSVPGQGTRISM 922 >gi|126741123|ref|ZP_01756804.1| Hybrid sensory histidine kinase [Roseobacter sp. SK209-2-6] gi|126717760|gb|EBA14481.1| Hybrid sensory histidine kinase [Roseobacter sp. SK209-2-6] Length = 762 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 138/255 (54%), Gaps = 9/255 (3%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E + ++ L A K A+ + KS+FLA +SHEIRTP+ +IG +E+I + + Sbjct: 217 AERNEREHALQEACKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILDTEL----DE 272 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 YA I +SG+ +L I+ND+L+ SKIE+GK+ L P +L A+ + ++L+ A Sbjct: 273 DQQMYAETISKSGSALLTIINDILNFSKIEAGKVELDNAPFNLQVAIEDVVTLLSPRATM 332 Query: 682 KRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EV 737 K + I +A ++P D+ V+Q+ NI+ NAI FT S G + I + ++ Sbjct: 333 KGVEITLRYAPDLPEFFTGDVGRVRQVVTNIVGNAIKFT-STGYVAIDVSGAKGPKGYQL 391 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V DTG+G+ L+ F Q+ ++ EGTGLGL ++ ++ G+ + S Sbjct: 392 GIEVLDTGIGIPEERLDDIFSAFEQVDSAATRSFEGTGLGLAISSRLLSLMGGRVTVKSV 451 Query: 798 PAKGTLIEIIFPLYD 812 KG++ I PL + Sbjct: 452 AGKGSVFTIRLPLTE 466 >gi|327481366|gb|AEA84676.1| sensor histidine kinase/response regulator GacS [Pseudomonas stutzeri DSM 4166] Length = 908 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+++++ PR +Y Sbjct: 259 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTQLLQKSDL----TPRQQDYLGT 314 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRT 688 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ Sbjct: 315 IEKSADSLLGIINEILDFSKIEAGKLVLDTIPFNLRDLIEDTLTILAPAAHTKQLELVSL 374 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 + + ++ D +KQ+ N++SNAI FT G + + N E + + V+DTG Sbjct: 375 VYRDTPLSLVGDPLRLKQVLTNLISNAIKFTNEGTIAVRAMVEDDNAERAQLRISVQDTG 434 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+T+ +L + F Q NS + GTGLGL ++K +++ G+ + S P +G+ Sbjct: 435 IGLTDQDLRALFQAFSQADNSMSRQPGGTGLGLVISKRLIEQMGGEIGVDSIPDEGS 491 >gi|209963966|ref|YP_002296881.1| sensor histidine kinase [Rhodospirillum centenum SW] gi|209957432|gb|ACI98068.1| sensor histidine kinase [Rhodospirillum centenum SW] Length = 878 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 136/255 (53%), Gaps = 8/255 (3%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + + A+ +E + KSDF+A +SHE+RTPL A++GF++++ PL E+ Sbjct: 372 RTRADEARAESEAANRAKSDFVAVMSHEVRTPLNALLGFADLLLQT---PL-TAEQREWV 427 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 +G +L +V+D+LD SK+E+G++ + P L LV+ A E+ + +R Sbjct: 428 TLQREAGEALLTVVSDVLDFSKLEAGRLEVDPHPFQLARLARSTSDLVRPTAEERGLALR 487 Query: 688 TSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 + +P ++ D + V+Q+ LN+L+NA+ FT G + ++ ++ V V DTG+ Sbjct: 488 VAVDPRLPEVVQGDAKRVRQVLLNLLNNAVKFTERG-HVALAVFPVADGRVRFEVLDTGI 546 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--I 804 G+ + E+ + F Q + R GTGLGL + + +VD G + S P +G+L Sbjct: 547 GIAPEQQERLFQEFVQADRATARRYGGTGLGLAICRRLVDLMGGAIGVESAPGRGSLFWF 606 Query: 805 EIIFPLYDTSHPHDC 819 E+ P ++S P C Sbjct: 607 ELPLPADESSRPPPC 621 >gi|189425740|ref|YP_001952917.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189421999|gb|ACD96397.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 645 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 93/263 (35%), Positives = 142/263 (53%), Gaps = 10/263 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H+I +Q + L+ AK AE ++ KS FL+ +SHEIRTP++ ++G +E++ F L Sbjct: 238 HEIRMRQQVETDLAQAKCAAEAANTAKSQFLSNMSHEIRTPMSGVLGMTELLG---FTEL 294 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P EY N I S + +L I+ND+LD+SKIE+GK+ L SL + + ++ Sbjct: 295 -TPEQHEYLNDIKASADNLLSIINDILDLSKIEAGKIELEAANFSLQQCIRTTTAMQMPR 353 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIII--STTHTSNE 735 EK + I T + IP ++ D VKQI LN+LSNA+ FT + GQI I S + NE Sbjct: 354 ILEKHLQIETKISPEIPEVVNGDQLRVKQILLNLLSNAVKFT-AHGQISIQASLLESRNE 412 Query: 736 EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++++ V DTGVG+ L++ PF Q S + GTGLGL + + + + G Sbjct: 413 HLLVQISVSDTGVGIAAEALDRIFDPFTQADASTSRKFGGTGLGLAICRQLAELMGGGIR 472 Query: 794 IFSTPAKGTLIEIIFPLYDTSHP 816 + S KG+ + P P Sbjct: 473 VESEEGKGSRFHLRLPFKRPGEP 495 >gi|289626570|ref|ZP_06459524.1| PAS [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650162|ref|ZP_06481505.1| PAS [Pseudomonas syringae pv. aesculi str. 2250] gi|330867641|gb|EGH02350.1| PAS protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 1189 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 111/373 (29%), Positives = 181/373 (48%), Gaps = 39/373 (10%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT---------- 505 +++E T I + +REG++ N + ++F EDI+ K T + N Sbjct: 567 ALVEGTPHPIYVRDREGMLRMCNDSYLRVFSAQREDIIGKSATEGVLGNAFEAREYAADY 626 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH------ 559 VM IL LR ++T I LPF Sbjct: 627 QRVMASNTALILDRPLRIGDRQMT-------------IYHWILPFRDSLGEVQGIIGGWI 673 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DISE +Q L AK+ A+ S KS FLA +SHEIRTP+ A+IG E+ +K G L Sbjct: 674 DISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHGEL 733 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + IE A S N +LD++ D+LDI++IESG+++L+ E +L V + + Sbjct: 734 -DRSAIEVAY---SSANDLLDLIGDILDIARIESGRLSLNPERANLRRLVESVLRVFDGL 789 Query: 679 ANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE 736 A +K + + + I +L D KQI N++SNAI FTP G +I++ + + + Sbjct: 790 ARQKDLDLVLELDSRINADVLIDPLRFKQILSNLVSNAIKFTPMGRIKIVLQAAESPDPQ 849 Query: 737 VI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ + V+D+G+G++ + ++ +PF Q N+ Q+ G GLGL + +++ G Sbjct: 850 LLHLHITVQDSGIGISAEDQQRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMMGGNLS 909 Query: 794 IFSTPAKGTLIEI 806 + S P +GT I + Sbjct: 910 LDSVPGQGTRISM 922 >gi|153836639|ref|ZP_01989306.1| putative sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus AQ3810] gi|149749988|gb|EDM60733.1| putative sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus AQ3810] Length = 873 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 113/390 (28%), Positives = 185/390 (47%), Gaps = 40/390 (10%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE---- 502 + ++ QL + E D I I + +G I N A +L Y +E+++ K L+ Sbjct: 234 LSAKISQLAEVAEHARDTIIITHPDGAIAWVNSAFEQLTEYSLEEVVGKSPGELLQGEDT 293 Query: 503 -QNTPSVMNHYL-------TEILSLDLRQT--LEKITLGSTKEEKLLSLRIIIKKLPFSS 552 NT ++++ + EIL+ Q ++ L +E LR I + Sbjct: 294 DANTVALLSQSVRSHSPVRVEILNYTKSQRPYWVELELSPVFDENGELLRFIAVE----- 348 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-- 610 DI++ ++ + +LS A ++K + KS+FLA +SHEIRTP+ AI+G SE++ Sbjct: 349 ------RDITDRREMEKRLSSALDKSKKATQAKSEFLANMSHEIRTPMNAIMGISEILLE 402 Query: 611 -KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 +N+R PR E + +S N ++ I+ND+LD SK+E+GK+ L E L V Sbjct: 403 NENRR-----EPR--ELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVE 455 Query: 670 EAISLVQLYANEK--RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 +L A++K ++L+ A N ++ D + QI LN++ NA+ FT G ++ Sbjct: 456 SCTALCAYQADKKNLKLLVDMPLAMNTV-VVGDKGRINQILLNLIGNAVKFTDEGH--VL 512 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 S V DTG+G+ L M F Q+ S R EGTGLGL ++K ++ Sbjct: 513 LKVRESELGFDFSVTDTGIGIPEDRLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISM 572 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 G+ + S G+ L S PH Sbjct: 573 YNGELCVRSDFGNGSCFSFSLQLPKRSQPH 602 >gi|332701992|ref|ZP_08422080.1| signal transduction histidine kinase with CheB and CheR activity [Desulfovibrio africanus str. Walvis Bay] gi|332552141|gb|EGJ49185.1| signal transduction histidine kinase with CheB and CheR activity [Desulfovibrio africanus str. Walvis Bay] Length = 1935 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/265 (30%), Positives = 145/265 (54%), Gaps = 19/265 (7%) Query: 550 FSSCYSLTMHDI---SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 + S+ M ++ E +Q + L K++AE+ + KS+FLA +SHEIRTP+ I+G Sbjct: 1524 LADLASVAMDNVRLYDELRQWADALEAQKEVAEQATRAKSEFLANMSHEIRTPMNGILGM 1583 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 +E+ + + + + EY +SG +LDI+ND+LD+SKIE+GK+ L EP L + Sbjct: 1584 NELALMR----VSDSQAREYLLLAKKSGLALLDIINDILDLSKIEAGKIALDQEPFDLRD 1639 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI 725 + + + L A+EK + I + + P R++ D ++Q+ N++SNA+ F+ G Sbjct: 1640 VLDSTLKPLSLGADEKGLHIHHTLEDCAPQRLIGDKGRLRQVLTNLVSNAVKFSDQG--- 1696 Query: 726 IISTTHTSNEE--------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 ++ T ++N E ++ V D G+G+ +L + F Q+ +S I+ GTGLG Sbjct: 1697 VVRVTVSNNGEASSPDRTQLLFTVADQGIGIPPDKLASIFESFAQLKSSAHIKYGGTGLG 1756 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGT 802 L + + +V+ G + S KG+ Sbjct: 1757 LTICRQLVELMGGSIWAESEVGKGS 1781 >gi|186686850|ref|YP_001870043.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186469202|gb|ACC85002.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 835 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 113/408 (27%), Positives = 190/408 (46%), Gaps = 51/408 (12%) Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 K NQ ++ QN + ++ + +MQL IL + SDG+ + + +G L N Sbjct: 215 KRNQAETDLQQNNLTLQE----------QTNLMQL--ILNSMSDGVIVSDDKGKFLIVNP 262 Query: 480 AVSKLFGYPVED-----------ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 A ++FG E T+F Q P L L + Q +E Sbjct: 263 AAEQMFGGITESQQSEWSEQYGLFQADRVTLFPTQEIP------LVRTLRGEQVQNVEMF 316 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYS------LTMHDISEWKQEKNKLSHAKKIAEKES 582 T S E + I + P + DI+E K + K+ AK+ AE + Sbjct: 317 TRHSKAPE---GIWITVSGTPLKDASGTLKGGVVVCRDITERKSAELKILQAKEAAEVAN 373 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 KS+FLA ++HE+RTPL I+G++++++ P + + + I + G+ +L ++N Sbjct: 374 HAKSEFLANMNHELRTPLNGILGYAQILQRD---PATTSKQQKGLSVIHQCGSHLLTLIN 430 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702 D+LD+SK+E KM+L+ + ++ + + ++ A +K I R AN + AD + Sbjct: 431 DILDLSKLEVQKMDLYPQDFHFANFLTTTVEICRIKAEQKGIAFRYHPANLPTAVHADDK 490 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--------VILRVRDTGVGMTNYELE 754 ++Q+ LN+LSNAI FT G + + SNEE + V DTG+G+ + + Sbjct: 491 RLRQVLLNLLSNAIKFTDFGS-VKFTVEAISNEETADTRSTRIRFLVEDTGIGIPTEKWQ 549 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 PF Q + EGTGLGL +++ +V + STP KG+ Sbjct: 550 TIFLPFEQAGKRDR-NSEGTGLGLAISQQIVQMMGSSIQVNSTPGKGS 596 >gi|28900985|ref|NP_800640.1| putative sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|260366196|ref|ZP_05778656.1| PAS domain protein [Vibrio parahaemolyticus K5030] gi|260879838|ref|ZP_05892193.1| putative sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus AN-5034] gi|260894512|ref|ZP_05903008.1| putative sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus Peru-466] gi|28809431|dbj|BAC62473.1| putative sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|308086398|gb|EFO36093.1| putative sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus Peru-466] gi|308091833|gb|EFO41528.1| putative sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus AN-5034] gi|308114853|gb|EFO52393.1| PAS domain protein [Vibrio parahaemolyticus K5030] Length = 873 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 113/390 (28%), Positives = 185/390 (47%), Gaps = 40/390 (10%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE---- 502 + ++ QL + E D I I + +G I N A +L Y +E+++ K L+ Sbjct: 234 LSAKISQLAEVAEHARDTIIITHPDGTIAWVNSAFEQLTEYSLEEVVGKSPGELLQGEDT 293 Query: 503 -QNTPSVMNHYL-------TEILSLDLRQT--LEKITLGSTKEEKLLSLRIIIKKLPFSS 552 NT ++++ + EIL+ Q ++ L +E LR I + Sbjct: 294 DANTVALLSQSVRSHSPVRVEILNYTKSQRPYWVELELSPVFDENGELLRFIAVE----- 348 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-- 610 DI++ ++ + +LS A ++K + KS+FLA +SHEIRTP+ AI+G SE++ Sbjct: 349 ------RDITDRREMEKRLSSALDKSKKATQAKSEFLANMSHEIRTPMNAIMGISEILLE 402 Query: 611 -KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 +N+R PR E + +S N ++ I+ND+LD SK+E+GK+ L E L V Sbjct: 403 NENRR-----EPR--ELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVE 455 Query: 670 EAISLVQLYANEK--RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 +L A++K ++L+ A N ++ D + QI LN++ NA+ FT G ++ Sbjct: 456 SCTALCAYQADKKNLKLLVDMPLAMNTV-VVGDKGRINQILLNLIGNAVKFTDEGH--VL 512 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 S V DTG+G+ L M F Q+ S R EGTGLGL ++K ++ Sbjct: 513 LKVRESELGFDFSVTDTGIGIPEDRLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISM 572 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 G+ + S G+ L S PH Sbjct: 573 YNGELCVRSDFGNGSCFSFSLQLPKRSQPH 602 >gi|332991838|gb|AEF01893.1| aerobic respiration control sensor protein ArcB [Alteromonas sp. SN2] Length = 785 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 106/373 (28%), Positives = 177/373 (47%), Gaps = 25/373 (6%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L SI++A+ D I N EG NR + G +++L T E++ + Sbjct: 160 LRSIIDASPDLIYYRNEEGRFAGCNRIAELMTGKTEQELLGLTPTDVYEEDLARQIVASD 219 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM------HDISEWKQE 567 E+L + T E + + + K++PF + D++E KQ Sbjct: 220 HEVLETNASITEELWLRFADGRRRYFEM----KRVPFFDKEGNRLGLLSFGRDMTERKQA 275 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 +N A K S+ K+ F+A +SHE+RTPL I+G S ++++ N + Sbjct: 276 ENA-------AAKASTDKTRFIATISHELRTPLNGIVGLSRMLRDTEL----NEEQFSWV 324 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + I S + +I ND++D+ K++ K+ L + VSL + E S+++L A +K++ ++ Sbjct: 325 STIYASAITLGNIFNDIIDLDKLDRDKVELSLKTVSLRDFTEELSSIIRLLAGDKQLELK 384 Query: 688 TSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE--VILRVRD 743 T+ +PR++ D ++QI NIL NA+ FT G + I T N+ V + D Sbjct: 385 TTIKEPLPRLVEVDGTRLRQILWNILFNAVKFTQKGHVSLSIEATKPENDVAFVTFVIED 444 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TGVG+ E+EK + Q+ + GTG+GL + K MVD G + S KGT Sbjct: 445 TGVGIPEEEIEKIFAMYYQVDHPDHQSATGTGIGLAICKQMVDLMKGNIKVTSVVGKGTR 504 Query: 804 IEIIFPLYDTSHP 816 EI P+ + P Sbjct: 505 FEIELPVEISKKP 517 >gi|157961008|ref|YP_001501042.1| hybrid sensory histidine kinase BarA [Shewanella pealeana ATCC 700345] gi|157846008|gb|ABV86507.1| Hpt sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] Length = 929 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 135/246 (54%), Gaps = 10/246 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ S KS+FLA +SHE+RTPL +IGF+ +++K PL + + +Y Sbjct: 286 ELDMAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKT----PLHSSQQ-DYIR 340 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS +L I+ND+LD SK+E+GKM L P SL E + E ++++ A EK + + Sbjct: 341 TIERSATNLLSIINDILDFSKLEAGKMVLENIPFSLRETIEETVTMLSSSAREKELALVI 400 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDT 744 IP + D QI N++ NAI FT G Q+ + + +V +R + DT Sbjct: 401 DVDARIPEDVSGDAMRFSQIITNLVGNAIKFTDKGSVQLKLQLEEVKDGKVHIRCEIIDT 460 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + FGQ +S R GTGLGL + K +V+ G+ +S P +G+ Sbjct: 461 GIGVDEQQQSSLFQAFGQADSSISRRFGGTGLGLVITKRLVNRMGGQIGCYSEPNQGSTF 520 Query: 805 EIIFPL 810 PL Sbjct: 521 WFSLPL 526 >gi|71908897|ref|YP_286484.1| PAS/PAC sensor signal transduction histidine kinase [Dechloromonas aromatica RCB] gi|71848518|gb|AAZ48014.1| PAS/PAC sensor signal transduction histidine kinase [Dechloromonas aromatica RCB] Length = 856 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 140/245 (57%), Gaps = 11/245 (4%) Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 W N L A A++ S KS+FLAR+SHE+RTPL AI+GF+ V++ PL + + Sbjct: 474 WSDVSN-LKRALIAADQGSQAKSEFLARMSHELRTPLNAILGFARVLEKDAASPLNDAQQ 532 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 EY ++I G +L ++N++LD+S IESGK+ + E + L + E ++L++ A+ + Sbjct: 533 -EYVHHILHGGQHLLGLINEILDLSAIESGKLKVEIEDIDLPSVLHECLALIKPLASNRE 591 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 I ++ S + + + AD + +KQ+ LN+LSNAI + GG++ ++ T + + L + D Sbjct: 592 ITLKISGSES-ATVAADRKRLKQVLLNLLSNAIKYNRHGGEVQVNIGATPS-GIRLDISD 649 Query: 744 TGVGMTNYELEKAMKPFGQ--IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 TG G+ ++ +PF + + NS EGTG+GL + + +V+ G ST G Sbjct: 650 TGQGIPPELAQRVFQPFDRLGLENS-----EGTGIGLAITRRLVELMGGSICFESTVNIG 704 Query: 802 TLIEI 806 T + Sbjct: 705 TTFRV 709 >gi|148657974|ref|YP_001278179.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1] gi|148570084|gb|ABQ92229.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1] Length = 1022 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 85/264 (32%), Positives = 142/264 (53%), Gaps = 11/264 (4%) Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 + + H+I+ KQ + L AK+ AE+ + KS FLA +SHE+RTPLT IIG++++I Sbjct: 472 AWQIVAHNITVRKQTEEALRQAKEWAEEANRTKSRFLANMSHELRTPLTTIIGYADLITI 531 Query: 613 QRFGPLGNPRYIEYANYIDR---SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + + + A+ I R +G +L I+NDLLD+SKIE+G+M +H E S+ Sbjct: 532 S----VHSGEFDQVASDIARVRDAGKHLLAIINDLLDLSKIEAGRMEIHSERFSVRALAE 587 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII-IS 728 E I+ ++++A ++ + + + + +D V+QI N++ NA FT G + I+ Sbjct: 588 EVIASMRVFAQKRNNDLTLNIDPTVEMMHSDDVRVRQILYNLVHNACKFTEDGAVTLDIA 647 Query: 729 TT---HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 T H ++ + DTG+GMT ++ + F Q +S + GTGLGL L + + Sbjct: 648 RTVSDHDHAALLVFTISDTGIGMTADQIAGLFREFTQADSSTTRKYGGTGLGLALCRRLT 707 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 GK + S P GT + P Sbjct: 708 HLLGGKITVTSQPGVGTTFVVTLP 731 >gi|32476458|ref|NP_869452.1| sensory transduction histidine kinase- sensory histidine kinase / response regulator hybrid [Rhodopirellula baltica SH 1] gi|32447003|emb|CAD78909.1| sensory transduction histidine kinase-putative sensory histidine kinase / response regulator hybrid [Rhodopirellula baltica SH 1] Length = 871 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/284 (29%), Positives = 148/284 (52%), Gaps = 29/284 (10%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI++ K+ + L A ++A+ + KS+FLA +SHEIRTP+ A+IG ++++ + Sbjct: 277 DITDLKRSEAALHEAVRMADAANRSKSEFLANMSHEIRTPMNALIGMADLLSQTKL---- 332 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +P +Y I S N +L ++ND+LD SKIE+ ++ L P SL + + + A Sbjct: 333 DPDQQDYVQIIQESSNGLLRLINDILDFSKIEARRLELESVPFSLGKTIESTLRSFSFKA 392 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII------------ 726 +EK + ++ + +P R++ D V+Q+ N++ NAI FT GG + Sbjct: 393 SEKGLELQRDISPELPDRLIGDPGRVRQVLTNLIGNAIKFTDHGGVRVRVEVLRREERAD 452 Query: 727 --ISTTHTSNE--------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 ++ TH+ E E+ L V D+G+G+ + + + PF Q S R GTGL Sbjct: 453 RDLAATHSGRESPERDDMVELRLSVCDSGIGIPPAQQDAVLNPFTQADASTTRRFGGTGL 512 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSHPHD 818 GL +++ +V+ G+ ++ S GT ++ P+ S P++ Sbjct: 513 GLSISRQLVELMGGELHLQSEVGVGTTFSFQLKMPVCPASMPNE 556 >gi|94268066|ref|ZP_01291073.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93451740|gb|EAT02506.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 709 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 85/263 (32%), Positives = 140/263 (53%), Gaps = 10/263 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+++ K+ + L AK+ AE+ KS FLA +SHEIRTP+ A+I S ++ Sbjct: 74 DVTKRKKVERDLIEAKEQAEQADRAKSRFLANMSHEIRTPMNAVINLSRLVLQDEL---- 129 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R +Y + RSG +L I+ND+LD SKIE+GK+ L P L E + + + + A Sbjct: 130 TSRQRDYVGKVLRSGENLLAIINDILDFSKIEAGKLELESVPFGLRELIDDVVVPLSPTA 189 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEV 737 ++K I R A +P R++ D ++QI LN++SNAI FT G ++ + ++V Sbjct: 190 HDKAIGFRVELAEELPERLVGDATRLRQILLNLVSNAIKFTEQGEVLLKVQLLKRQGDQV 249 Query: 738 IL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +V D+G+G++ + ++ + F Q +S R GTGLGL + K ++ + + Sbjct: 250 TIAFKVSDSGIGISPAQQQRLGESFRQADDSINRRFGGTGLGLAITKQLLGLMGSELEVE 309 Query: 796 STPAKGT--LIEIIFPLYDTSHP 816 S P G+ I L D + P Sbjct: 310 SAPGAGSNFAFTIQLALADDASP 332 >gi|320353213|ref|YP_004194552.1| Hpt sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320121715|gb|ADW17261.1| Hpt sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 564 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/255 (31%), Positives = 133/255 (52%), Gaps = 8/255 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 ++ ++E KL + A+ + KSDFLA +SHEIRTP+ +IG SE++ + Sbjct: 18 EVQRLERENRKLRKKARQADSANQAKSDFLAMISHEIRTPMNGVIGISELLLDTDL---- 73 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 PR +A+ I S +L ++N+LLD SKIE+ KM L EP L + + +SL ++ Sbjct: 74 QPRQKHFAHLIRTSATSLLTLINNLLDFSKIEADKMVLESEPFDLRALLEQLLSLYRVTG 133 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV- 737 K + + ++ R + D ++Q+ +N+L NA+ FT G ++ + E Sbjct: 134 KSKGLRVNAEIDPSLSRQYVGDAHRLRQVLVNLLGNAVKFTEQGAILLRVRKERAGETAE 193 Query: 738 ILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +LR V D+GVG+ ++K +PF Q+ +S R GTGLGL + ++ G+F Sbjct: 194 LLRFEVEDSGVGIAEGSMDKLFQPFSQVDSSSTRRYGGTGLGLSICARLIKLMEGEFGAR 253 Query: 796 STPAKGTLIEIIFPL 810 S KG+ PL Sbjct: 254 SEYGKGSTFWFSLPL 268 >gi|300024973|ref|YP_003757584.1| PAS/PAC sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC 51888] gi|299526794|gb|ADJ25263.1| PAS/PAC sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC 51888] Length = 651 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 102/369 (27%), Positives = 173/369 (46%), Gaps = 21/369 (5%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +L+ D + + +G ++ NRA + FG E +L F P + +E Sbjct: 122 LLDVQRDFVVRRSADGRLVFANRAFCEAFGVRSEALLGSKF------EPPVLAEDDCSEA 175 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 ++ D R + + K ++ ++ IK S + DI+ + + +L A+ Sbjct: 176 VAYDCRGAQ---LVHTQKGQRWIAWDFQEIKGQEGSVEFQGVGRDITVERGVERELKDAR 232 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 AE S KS FLA +SHEIRTP+ I+G ++++ + + A ++ S Sbjct: 233 NQAEMASRAKSRFLATMSHEIRTPMNGILGMISLMRDTQL----DAEQRTCARIVEDSTR 288 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L++V+D+LD SKIE+GK+ L P SL V++A+ L+ A KR+ ++ N++P Sbjct: 289 ALLNLVDDILDFSKIEAGKLELGSRPFSLKMCVAQAMQLLAPSAAAKRLSFTSTLTNDVP 348 Query: 696 R-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRVRDTGVGM 748 ++ D V+QI LN+LSNAI FT +GG + + N E+ ++V DTGVG+ Sbjct: 349 EWVIGDEMRVRQIVLNLLSNAIKFTETGGIGVCVSLAPENGKSGGDCEIAIKVTDTGVGL 408 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + F Q + GTGLGL ++K + A G S +G + Sbjct: 409 PAEFISHMFQEFEQSSITMARHPGGTGLGLAISKRLAQAMGGDILAESGADRGASFTAVL 468 Query: 809 PLYDTSHPH 817 P Sbjct: 469 RFGIAEQPE 477 >gi|149189915|ref|ZP_01868194.1| sensory box histidine kinase/response regulator [Vibrio shilonii AK1] gi|148836230|gb|EDL53188.1| sensory box histidine kinase/response regulator [Vibrio shilonii AK1] Length = 1202 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 128/225 (56%), Gaps = 8/225 (3%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S KSDFLA +SHEIRTP+ AIIG S + + + + Y + ++ S +L I+ Sbjct: 486 SQAKSDFLANMSHEIRTPMNAIIGMSHLALETKL----DNKQRHYISKVNSSAQALLGII 541 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILAD 700 ND+LD SKIE+GK+ + SLD + E ISL+ A +K++ + A+++P +++ D Sbjct: 542 NDILDFSKIEAGKVEIESINFSLDSVLEEVISLIDDSAKQKKLSLIIDVASDVPDQLIGD 601 Query: 701 LRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE--VILRVRDTGVGMTNYELEKAM 757 +KQ+ N+ SNA+ FT +G ++ +ST E + V+DTG+GMT +++ Sbjct: 602 PLRIKQVLTNLTSNAVKFTETGEVRVKVSTAMMRERECKINFAVKDTGIGMTREQIDSLF 661 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + F Q +S + GTGLGL + K +V+ GK + S +G Sbjct: 662 QSFSQADSSTTRKYGGTGLGLSITKNLVELMGGKVSVESRLGEGA 706 >gi|304393564|ref|ZP_07375492.1| histidine protein kinase DivJ [Ahrensia sp. R2A130] gi|303294571|gb|EFL88943.1| histidine protein kinase DivJ [Ahrensia sp. R2A130] Length = 564 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 126/236 (53%), Gaps = 2/236 (0%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ S F A++SHE+RTPL AI GFS+++ + GPL + EY I +S + +L Sbjct: 268 ERGESQAKKF-AQMSHELRTPLNAIGGFSQLLASGVAGPLTTDKQREYVALIQQSSDHLL 326 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 IV DLLD+S+I+ G L E +++Q A I + ++ ++ Sbjct: 327 QIVGDLLDVSRIDQGHFELDVAAFDFVEMAQSTTAMMQAEAIAADIDLVCDMPKSLAAVV 386 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 D R+ +Q+ +N+LSNAI F+P+G + + T V +R D G+GMT +++ + Sbjct: 387 GDRRACQQVLINLLSNAIKFSPAGSSVRL-TARRHGRFVKIRCSDFGIGMTREFIDQIGR 445 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 PF Q + + G+GLG+ + K +V+ + G+ + S P +GT + ++ P S Sbjct: 446 PFMQAQPASEGGPTGSGLGVSVVKGLVELHGGQIHFDSKPDEGTTVTVMLPFRSAS 501 >gi|254413568|ref|ZP_05027338.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196179675|gb|EDX74669.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1315 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 93/271 (34%), Positives = 145/271 (53%), Gaps = 18/271 (6%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI++ KQ + L+ AK AE + KS FLA +SHE+RTPL AI+GF+++++ P Sbjct: 825 EDITDRKQIELALTEAKDAAETANRAKSTFLANMSHELRTPLNAIMGFTQLMQRSSTFP- 883 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 Y E I RS +L ++N +LD+SKIE+G++ L+ L + + +L Q+ Sbjct: 884 --ADYQENLQIIYRSSEHLLTLINQVLDLSKIEAGRITLNQTVFDLYALLRDVENLFQIK 941 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-------QIIISTT 730 A +K + + +++ +P+ + D ++Q+ +N+LSNA FT GG I + T Sbjct: 942 ARDKGLQLLFDYSDQVPQYVQTDAVKLRQVLINLLSNAFKFTQEGGISVKVSRGIDVGET 1001 Query: 731 HTSN--EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 T+N EE+ L+ + DTG GM ELE F Q +Q EGTGLGL +++ V Sbjct: 1002 PTANKPEEITLQFEIEDTGAGMAAEELESIFDAFIQSKTGKQ-HQEGTGLGLSISRKFVQ 1060 Query: 787 ANMGKFYIFSTPAKGTL--IEIIFPLYDTSH 815 G + S +GT+ EI L D S Sbjct: 1061 LMGGDLTVASQVDQGTVFRFEIRVKLADASQ 1091 >gi|259415156|ref|ZP_05739078.1| periplasmic sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] gi|259349066|gb|EEW60820.1| periplasmic sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] Length = 770 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/258 (32%), Positives = 140/258 (54%), Gaps = 9/258 (3%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E + + L A++ AE S KS+FLA +SHEIRTP+ +IG +EV++ + P Sbjct: 225 AERDEREQALERAREQAEIASRAKSEFLANMSHEIRTPMNGVIGMAEVLRETKL----TP 280 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 Y + I +SGN +L I+ND+L+ SKIE+GK+ L +L V + + L+ A E Sbjct: 281 DQEMYTDTIVKSGNALLTIINDILNFSKIEAGKLELTQATFNLRTVVEDVVMLLAPKAAE 340 Query: 682 KRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K + + + ++ D ++QI N++ NA+ FT G I T + +E+ LR Sbjct: 341 KWVQLTLRYDPDLVEFYDGDAGRIRQIITNVVGNAVKFTSQGSVHIDVTGTSRGKEMDLR 400 Query: 741 --VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG+G+ +L++ F Q+ + EGTGLGL ++ ++ G+ ++ S+ Sbjct: 401 ISVVDTGIGIPAEKLDRIFHAFEQVDGAATRSFEGTGLGLAISTRLLQLMKGRIHVTSSE 460 Query: 799 AKGTL--IEIIFPLYDTS 814 KG++ I+I P D + Sbjct: 461 GKGSVFTIDITLPTSDRA 478 >gi|92115761|ref|YP_575490.1| multi-sensor hybrid histidine kinase [Nitrobacter hamburgensis X14] gi|91798655|gb|ABE61030.1| multi-sensor hybrid histidine kinase [Nitrobacter hamburgensis X14] Length = 752 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 102/356 (28%), Positives = 161/356 (45%), Gaps = 12/356 (3%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S+ E+ D I + N +G+I S N A L D+L F + + + S + T Sbjct: 111 SLFESQDDLIVLRNADGLITSVNDAYCVLAQRSRADLLGSRFALPVLEQGESAIESNGTR 170 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 I + L + E L+ RI C D++ + + L A+ Sbjct: 171 IHDQRVETALGPRWIA--WREGLV--RIDANHPAELQCVG---RDVTNRTETEYALGEAR 223 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 A + KS FLA SHEIRTPL IIG S ++ + P Y + SG+ Sbjct: 224 DHANAANRAKSRFLAMTSHEIRTPLNGIIGMSGLLLDTSL----TPEQTTYVKAVKASGD 279 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L ++ +LLD S+IE+GK++L P L + + + L+ A +++ I +P Sbjct: 280 ALLSLIEELLDYSRIEAGKIDLESRPFILSDLIEDITELLAPRAQARQLEIAAYIDEQLP 339 Query: 696 -RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 ++ D ++QI LN+ NAI FTPSGG +I T + V+DTG+G+T Sbjct: 340 IEVIGDATRLRQILLNLAGNAIKFTPSGGVALIVEPGTEPGTIRFMVQDTGIGITPDAQA 399 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + F Q GTGLGL ++ +V G+ + S P G+ E+ PL Sbjct: 400 RVFREFEQADEQIARNYGGTGLGLSISDRIVKRMGGRITLESKPGAGSTFEVSIPL 455 >gi|146302442|ref|YP_001197033.1| multi-sensor hybrid histidine kinase [Flavobacterium johnsoniae UW101] gi|146156860|gb|ABQ07714.1| multi-sensor hybrid histidine kinase [Flavobacterium johnsoniae UW101] Length = 1350 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 134/243 (55%), Gaps = 9/243 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+E AK++AE + KSDFLA +SHEIRTPL IIGF+ ++ + Sbjct: 950 KKETEDAIKAKQLAEAANKSKSDFLANMSHEIRTPLNGIIGFTHLLMKTELEEIQE---- 1005 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +Y I++S + +L+I+ND+LD SKIE+GK+ L + + + + + L+ +N+K + Sbjct: 1006 KYMTTINQSAHSLLEIINDILDFSKIEAGKLELFIDLYDIKKVLGQVFDLIVFESNQKSL 1065 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG----QIIISTTHTSNEEVIL 739 + + +++P+ I D+ +KQI +N+LSNA+ FT G ++S T + + Sbjct: 1066 QLELNVDHDVPKYIWTDIVRIKQILINLLSNAVKFTNEGSIKLNVSVLSKTKNNFCTIRF 1125 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ +K K F Q +S + GTGLGL ++ ++ + + ST Sbjct: 1126 SVIDTGIGIMEKNQKKIFKAFSQADSSTTRKFGGTGLGLTISNQLLALMESRLQLESTIG 1185 Query: 800 KGT 802 +G+ Sbjct: 1186 EGS 1188 >gi|284009349|emb|CBA76532.1| two-component system, NarL family, capsular synthesis sensor histidine kinase [Arsenophonus nasoniae] Length = 952 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 89/257 (34%), Positives = 141/257 (54%), Gaps = 7/257 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS Q +N L + + +E+ + KS FLA VSHE+RTPL IIG E++++ P+ Sbjct: 445 DISARVQMENSLHNMAQASEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSYEL-PIQ 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + +D S +L+L I+ND+LD SKIES ++N+ P + E S IS Sbjct: 504 ADRLL---TTMDHSSSLLLKIINDILDFSKIESKQLNIDPAPFNCREVFSFIISNYIPLI 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +K + I ++P I+ AD V+QI NILSNAI FT +G I+ + + Sbjct: 561 GKKGLSIFYYIDPDVPDIINADSVRVQQIISNILSNAIKFTKTG--FILLNIFIKDFYIY 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + +RDTG+G+ + L + PF QI + + +GTGLGLP+ + +++ G + S Sbjct: 619 IEIRDTGIGIPDNILMQLFDPFFQIKVNNESFSQGTGLGLPICEKLINLMDGDIEVNSQV 678 Query: 799 AKGTLIEIIFPLYDTSH 815 G+ + PL+D+ + Sbjct: 679 GIGSSFTVRLPLFDSQY 695 >gi|254787892|ref|YP_003075321.1| MASE1/CHASE/His Kinase A/ATPase domain-containing protein [Teredinibacter turnerae T7901] gi|237684334|gb|ACR11598.1| MASE1/CHASE/His Kinase A/ATPase domain protein [Teredinibacter turnerae T7901] Length = 757 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 85/252 (33%), Positives = 144/252 (57%), Gaps = 8/252 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNP 621 E +++ +L+ A A +S KS FLA +SHE+RTPL +IIGFS ++KN +P Sbjct: 510 EVRKKTQELTQALDDARHANSAKSLFLASMSHELRTPLNSIIGFSVRLLKN--LNQSKDP 567 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + I+R+G +L+++ND+LD+SK+E+GKM++ E VSL + E ++ + A Sbjct: 568 KSYRSLEVIERNGRHLLNLINDILDLSKVEAGKMSIDREWVSLKTLLDETVTSLTPLAES 627 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS---NEEVI 738 K + + + + AD + + Q+ LN++SN I +T +GG I IS+ S +E V Sbjct: 628 KGLTLELKMV-EVANVFADQKRLAQVLLNLVSNGIKYTSTGG-ISISSRRESREGHEGVA 685 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V DTGVG+ ++++ + + Q+ GTGLGL LA+ +V+ + G+ +FS Sbjct: 686 IDVVDTGVGIKPEDIDRVFRRYEQLDEPSHSSEVGTGLGLALAEELVNLHGGRLSVFSEY 745 Query: 799 AKGTLIEIIFPL 810 +G+ PL Sbjct: 746 GEGSCFTCWLPL 757 >gi|295690287|ref|YP_003593980.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] gi|295432190|gb|ADG11362.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] Length = 672 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 136/236 (57%), Gaps = 5/236 (2%) Query: 576 KIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 + A +E++H K+DFLA +SHE+RTPLTA++GF+++++ Q P + Y + +G Sbjct: 293 QAAAEEAAHVKADFLANMSHELRTPLTAVLGFAQLVERQ---PELSAETRAYVQRVTSAG 349 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 + +ND+LD SK+E+G++++ +P+S+ E EA+ + A EK +L+R + +++ Sbjct: 350 KALRATINDILDFSKLEAGQVDIKPQPMSVAELTREAVDMFAAQAREKGVLLRLADLSDL 409 Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 P ++ AD ++Q+ LN++ NA+ FT G + + + ++ V DTG GM+ + Sbjct: 410 PLLIEADPDRLRQVLLNLIGNAVKFTEVGEIAVQARLDARADHIVFEVSDTGPGMSADQS 469 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ + F Q+ + GTGLGL + K +V+A G + S +G+ P Sbjct: 470 KRLFQRFSQVDAGAARKHGGTGLGLAICKGLVEAMGGSIGVDSRQGQGSRFWFTIP 525 >gi|253698665|ref|YP_003019854.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M21] gi|251773515|gb|ACT16096.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M21] Length = 509 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 105/393 (26%), Positives = 188/393 (47%), Gaps = 51/393 (12%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 +RKME ++L+ +D + ++ +G I++ +R ++L E +L K L+ Sbjct: 136 ERRKME-------AVLQGMADLLVAVDLQGRIITWSRQAARLLAAEGESLLGKTLEEVLK 188 Query: 503 QNTPSVMNHYLTEILSLDLRQTLE-KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561 E+ + + +T E ++ +G L+I + +P S + + Sbjct: 189 AEVAG------GELPARTVLRTAEPRLDVGYL-------LKIGSQAVPVLSSAAPLWNAN 235 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E + K+ E E K DF++ +SH++++P+TA++G ++++ + GP+ P Sbjct: 236 GELAGSVEIIRDISKLKELEQ-EKEDFVSMLSHDLKSPITAVVGSIDLVRESKLGPV-TP 293 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF---EPVSLDEAVSEAISLVQLY 678 EY N S ++++++ LL I K E+GKM L+F +PV L ++ + + Q Sbjct: 294 DQSEYLNAAIESCEEMVEMIDTLLGIHKFEAGKMKLNFREEDPVLL---INRSAAKFQTP 350 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST--------- 729 A I + T+ ++P I AD +I N+LSNA+ FTP GG+I +S Sbjct: 351 AQRGAIRLFTTLPASLPAISADRSLFSRILGNLLSNAVKFTPEGGEIEVSADLVQDPAPV 410 Query: 730 -TH------------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 H + E V +RVRD+GVG+ L F Q N +Q + GTGL Sbjct: 411 LAHVPQECYPGQELPSEGEFVRIRVRDSGVGIPQESLGSIFDRFVQARNRRQGKTRGTGL 470 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GL + +DA+ G + S P +G++ ++FP Sbjct: 471 GLAFCRKAMDAHGGYIWAKSEPGEGSVFTVLFP 503 >gi|149174355|ref|ZP_01852982.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797] gi|148846900|gb|EDL61236.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797] Length = 1102 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 103/371 (27%), Positives = 189/371 (50%), Gaps = 19/371 (5%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S E + GIA + +G L N+ + ++F Y E++L + ++ + Sbjct: 320 STFEQVAMGIAHVALDGRWLRVNQRLCEIFDYQAEELLELRIHDLSHPDELEIVLKNMQR 379 Query: 516 ILSLDLRQ-TLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 + + +++ ++EK L GS+ L+ + ++ + + + +I K+ + KL Sbjct: 380 MQAGEIKSYSIEKRYLRKDGSSIWTNLM-VSLVRHQSGEPKHFIFGIKNIQRRKETEQKL 438 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 AK AE+ S KS+FLA +SHE+RTPL +IG +E+++ N E+ + Sbjct: 439 KAAKLTAEEASQTKSEFLANMSHELRTPLNGVIGMTELLQGTHL----NQHQQEFVDACR 494 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 SG +L+++ND+LD SKIE+GK++L L+ + + +S + NEK + + F Sbjct: 495 SSGESLLNLINDILDFSKIEAGKLDLDLHEFDLENVLMDTVSTLVWRTNEKNLEL-PCFV 553 Query: 692 NNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR----VRDTG 745 + R+ D ++QI +N++ NAI FT S G++++ T S E +R V DTG Sbjct: 554 DPESRLTLKGDSYRLRQILVNLIGNAIKFTDS-GEVVVRTRTVSRENGNIRIHFSVTDTG 612 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT--L 803 +G++ ++ + + F Q+ S GTGLGL +++ +V+ G+ I S G+ Sbjct: 613 IGISESKINRLFQSFSQVDASTTRNYGGTGLGLVISQNLVELMGGRIGIESQDGVGSTFW 672 Query: 804 IEIIFPLYDTS 814 EI F + +S Sbjct: 673 FEIPFEISTSS 683 >gi|163846387|ref|YP_001634431.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222524154|ref|YP_002568625.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163667676|gb|ABY34042.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222448033|gb|ACM52299.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 599 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/257 (32%), Positives = 142/257 (55%), Gaps = 8/257 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DI+ +KQ L AK+ AE S KS FL+ +SHE+RTPLTAI+G+SE ++ Sbjct: 333 VLRDITLFKQAAQALQEAKEAAEAASQAKSAFLSMMSHELRTPLTAILGYSEFLRED--- 389 Query: 617 PLGNPRYIEYANYIDR---SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 L N + +DR +G +L ++ND+LD +++E+ + +H EPV + ++E + Sbjct: 390 -LLNRDLHSLTSDLDRIITAGRHLLTLINDILDYARLEANAVTIHPEPVHMSTLINEVVM 448 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +Q A + + I + ++P +LAD ++Q+ LN++ NA FT G+I + ++ Sbjct: 449 TLQGLAKQGQNTITVTVEPDLPPVLADPVRLRQVLLNLVGNACKFT-GQGEIRVHCYRST 507 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E+ + V DTG+G+ +L+ KPF Q+ N R GTGLGL + + + G Sbjct: 508 TAEIQIDVSDTGIGIAADQLQHLFKPFVQVDNGPTRRYGGTGLGLAICQRLCQVMGGAIL 567 Query: 794 IFSTPAKGTLIEIIFPL 810 + S P +G+ + P+ Sbjct: 568 VTSEPGRGSTFSVRLPI 584 >gi|326318684|ref|YP_004236356.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375520|gb|ADX47789.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 1160 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 138/244 (56%), Gaps = 3/244 (1%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 ++ LS + E+ S +KS+FLA +SHE+RTPL + + ++++ + + G L + + + YA Sbjct: 457 QDALSDKARDLEQASQYKSEFLANMSHELRTPLNSSLILAKLLADNKGGNLTDEQ-VRYA 515 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I +GN +L ++ND+LD++KIE+G+ + EPV++ AV + ++ A EK + Sbjct: 516 ETIHGAGNDLLTLINDILDLAKIEAGQATVDIEPVNVARAVQSIVEPLRPLAREKNLAFS 575 Query: 688 TSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 +P +L D + + QI N+LSNAI FT G++ + + V VRDTG+ Sbjct: 576 AVVEPGVPDVLRTDAQRLGQILKNLLSNAIKFTER-GEVALRVAAQPDGRVAFSVRDTGI 634 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +++ + + F Q S + GTGLGL +++ + G + ST +G++ + Sbjct: 635 GIPDHQQKLIFEAFRQADGSTHRKYGGTGLGLSISRDLAQLLGGSVSVQSTSGQGSVFTL 694 Query: 807 IFPL 810 + PL Sbjct: 695 VLPL 698 >gi|114776327|ref|ZP_01451372.1| sensory transduction histidine kinase [Mariprofundus ferrooxydans PV-1] gi|114553157|gb|EAU55555.1| sensory transduction histidine kinase [Mariprofundus ferrooxydans PV-1] Length = 1180 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 89/242 (36%), Positives = 127/242 (52%), Gaps = 13/242 (5%) Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 + S K+ FLA SHE+RTPL AIIGFSE++ N R GPL N + Y I SG +L Sbjct: 485 QASEAKNQFLANTSHELRTPLNAIIGFSELMGNPRMGPL-NSKQHRYVENIHSSGKRLLK 543 Query: 640 IVNDLLDISKIESGKMNLH---FEPVSL-DEAVSEAISLVQLYANEKRILIRTSFANNIP 695 I+NDLLDIS+IE+G M + F P + ++ ++E SL L + L + + Sbjct: 544 IINDLLDISRIEAGMMVVEEQVFPPREVANQVMAEMTSLASLKGLK---LTMDACPDEGQ 600 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIIS----TTHTSNEEVILRVRDTGVGMTNY 751 I D + Q+ +N++ NAI FTP GG + +S E+++ V+D G+G+ Sbjct: 601 LIRTDRGKLHQMMVNLVGNAIKFTPEGGSVTLSMEINVVSARQRELVVHVKDNGIGIPAA 660 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 +LEK +PF Q+ EGTGLGL L + V G S G+ I P + Sbjct: 661 DLEKIFEPFVQVHGGLARAYEGTGLGLALTRRQVRMLGGDVSGESREGDGSTFIIRLP-F 719 Query: 812 DT 813 DT Sbjct: 720 DT 721 >gi|328468861|gb|EGF39821.1| putative histidine kinase [Vibrio parahaemolyticus 10329] Length = 1051 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/251 (35%), Positives = 139/251 (55%), Gaps = 15/251 (5%) Query: 563 EWKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 E +Q K KL+ AK+ AE+ S KS FLA +SHEIRTPL +IG SEV+ + Sbjct: 366 EREQAKQKLTKAKEDAERAKDDAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLAD--- 422 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 PL + +Y + I+ S L+L ++ND+LD SKIESG + + + E++ + S+V Sbjct: 423 TPLTATQR-DYVDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIV 481 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 EK I + S + N P I+ D ++Q+ +N +SNA+ FT G + TT SN Sbjct: 482 SPKVKEKGIELTVSISPNTPYHIVIDDHRLRQVIMNFMSNAVKFTERGSVELSITTLESN 541 Query: 735 E-EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 E E ++ V+D+G+G+ + ++ PF Q +S + GTGLGL ++ +V+ G Sbjct: 542 ESEAVIEFSVQDSGIGIDEQQQKRIFAPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGS 601 Query: 792 FYIFSTPAKGT 802 + S +G+ Sbjct: 602 IQLESEKGRGS 612 >gi|193084137|gb|ACF09803.1| ammonium transporter/integral membrane sensor signal transduction histidine kinase [uncultured marine group III euryarchaeote SAT1000-53-B3] Length = 752 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 92/263 (34%), Positives = 141/263 (53%), Gaps = 10/263 (3%) Query: 554 YSLTMHDISE----WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 Y++ M + E +++K+ L A + A+ + KSDFLA +SHE+RTPL AIIG+SE+ Sbjct: 488 YNILMSSLEESDKIMRKQKDSLKVAMQKAQTANKAKSDFLANMSHELRTPLNAIIGYSEM 547 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + G Y E I SG+ +L ++ND+LD+SKIE+GKM+LH E + Sbjct: 548 LIEEA-DDDGLETYSEDLAKIHSSGDHLLTLINDILDLSKIEAGKMDLHIEEFDFTNLLK 606 Query: 670 --EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 EA + + N+ + +I+ + D V+QI N+LSNA FT G I + Sbjct: 607 QIEATARPLVDKNKNKFVIKCKTKKLKLK--NDQTKVRQILFNMLSNAAKFTKKG-TITL 663 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + + V DTG+GM+ +++K + F Q +S GTGLGLP++K M + Sbjct: 664 QIKPEKKDNLRFDVIDTGIGMSEEQMDKVFEEFTQAESSTSKDYGGTGLGLPISKKMTEM 723 Query: 788 NMGKFYIFSTPAKGTLIEIIFPL 810 GK + S KGT II P+ Sbjct: 724 MGGKMEVKSKEGKGTTFSIIIPI 746 >gi|170727693|ref|YP_001761719.1| hybrid sensory histidine kinase BarA [Shewanella woodyi ATCC 51908] gi|169813040|gb|ACA87624.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 937 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 89/252 (35%), Positives = 141/252 (55%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A + S KS+FLA +SHE+RTPL +IGF+ +++K PL + +Y N Sbjct: 287 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKT----PLHTSQQ-DYIN 341 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S +L+I+ND+LD SK+E+GK+ L P +L E V + ++++ A EK I + Sbjct: 342 TIEKSATNLLEIINDILDFSKLEAGKLVLESLPFALRELVGDTVTILSNSAREKDIELVI 401 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDT 744 ++P L D + QI N++ NAI FT SG + + T S ++V +R + DT Sbjct: 402 DIDQSVPEALCGDPMRIGQILTNLIGNAIKFTDSGSVHLSLKLTDGSKDKVNIRCEITDT 461 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + E + FGQ +S R GTGLGL + K +V+ G+ S +G+ Sbjct: 462 GIGIDPQQQEILFQAFGQADSSISRRFGGTGLGLIITKRLVNRMGGQIGCNSKANEGSTF 521 Query: 805 EIIFPLYDTSHP 816 PL + +P Sbjct: 522 WFTLPLETSQYP 533 >gi|327539316|gb|EGF25937.1| sensory box histidine kinase/response regulator [Rhodopirellula baltica WH47] Length = 843 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/284 (29%), Positives = 148/284 (52%), Gaps = 29/284 (10%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI++ K+ + L A ++A+ + KS+FLA +SHEIRTP+ A+IG ++++ + Sbjct: 249 DITDLKRSEAALHEAVRMADAANRSKSEFLANMSHEIRTPMNALIGMADLLSQTKL---- 304 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +P +Y I S N +L ++ND+LD SKIE+ ++ L P SL + + + A Sbjct: 305 DPDQQDYVQIIQESSNGLLRLINDILDFSKIEARRLELESVPFSLGKTIESTLRSFSFKA 364 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII------------ 726 +EK + ++ + +P R++ D V+Q+ N++ NAI FT GG + Sbjct: 365 SEKGLELQRDISPELPDRLIGDPGRVRQVLTNLIGNAIKFTDHGGVRVRVEVLRREERAD 424 Query: 727 --ISTTHTSNE--------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 ++ TH+ E E+ L V D+G+G+ + + + PF Q S R GTGL Sbjct: 425 RDLAATHSGRESPERDDMVELRLSVCDSGIGIPPAQQDAVLNPFTQADASTTRRFGGTGL 484 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSHPHD 818 GL +++ +V+ G+ ++ S GT ++ P+ S P++ Sbjct: 485 GLSISRQLVELMGGELHLQSEVGVGTTFSFQLKMPVCPASMPNE 528 >gi|317485574|ref|ZP_07944451.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] gi|316923254|gb|EFV44463.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] Length = 1176 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/270 (32%), Positives = 139/270 (51%), Gaps = 23/270 (8%) Query: 559 HDISEWKQE----KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 H +SE ++ +L AK+ A+ ++ KS FLA +SHEIRTPL I+ F+E+ + Sbjct: 374 HRVSERTRDLQAINAELQLAKEAADAATTAKSQFLANISHEIRTPLHGIMAFAELALLKE 433 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P P Y I +S +L+I+NDLLD+SKIE+G + L P LD+ V ++ Sbjct: 434 KTP---PH--RYLRAILQSSRALLEIINDLLDVSKIEAGHLELEQAPFMLDDVVHHVCTV 488 Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 A+ I + N+ ++ D ++QI +N+++NA+ FT GGQI ++ Sbjct: 489 ALHNAHAGGIELVVDMDPNMQIALIGDAGRLQQIIMNLVTNAVKFTGPGGQICVTLKQGH 548 Query: 734 NE-------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 E ++I VRDTGVG+ L + +PF Q+ S R GTGLGL + Sbjct: 549 AEPLPSDTCPEQRRVQIICFVRDTGVGIAPEFLGQLFQPFRQVDASTTRRHGGTGLGLCI 608 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + +V+ G+ ++ S P G+ PL Sbjct: 609 CRQLVEMMHGEIWVESEPNVGSTFAFSIPL 638 >gi|183179349|ref|ZP_02957560.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-3] gi|183012760|gb|EDT88060.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-3] Length = 740 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 85/239 (35%), Positives = 138/239 (57%), Gaps = 10/239 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K+ +++L AK+ A+ S K DFLA +SHEIRTP+ AI+G + + N PL Sbjct: 505 DMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNT---PLD 561 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + +Y I+ S +L I+ND+LD SK+E+GK+N+ +LD+ + ++V L A Sbjct: 562 TTQR-KYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKA 620 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS--TTHTSNEE 736 EK I +IP ++ D + Q+ +N+ NA+ FT S G+I++S + + ++ Sbjct: 621 QEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFT-SQGEIVLSARVSQLNEQQ 679 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 V LR V+DTG+G+ +L+ F Q NS + GTGLGL ++K +V+ G Y Sbjct: 680 VTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGANY 738 >gi|153871596|ref|ZP_02000728.1| response regulator receiver modulated metal dependent phosphohydrolase [Beggiatoa sp. PS] gi|152071937|gb|EDN69271.1| response regulator receiver modulated metal dependent phosphohydrolase [Beggiatoa sp. PS] Length = 565 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 131/241 (54%), Gaps = 2/241 (0%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A +++ K+ FL +H++R PL I+G+ ++++ + L + ++Y N I + Sbjct: 309 ANRQNERKNQFLGMAAHDLRNPLGVILGYGQMLQEEALEIL-DEEQLDYLNRIHNASQFT 367 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L++VN+LLD++KIESG + L E L ++EAISL + A K+I + ++ N+P + Sbjct: 368 LNLVNNLLDVAKIESGNLALELEQTCLMRTITEAISLNRFLAESKQIQLNFNYDENLPEM 427 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D ++Q+ N++SNAI ++ ++ I T N +V++ V D G G+ EL+K Sbjct: 428 TVDASKIQQVINNLISNAIKYSHPQTKVQIHATRKQN-DVLISVTDEGQGIPKSELDKLF 486 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 +PF + TGLGL + + +V+A+ GK ++ S G+ ++ P P Sbjct: 487 QPFSKTSVKSTAGESSTGLGLLICRQIVEAHSGKIWVESEVGVGSTFYVLLPPIPEPQPQ 546 Query: 818 D 818 + Sbjct: 547 N 547 >gi|149279499|ref|ZP_01885629.1| PAS [Pedobacter sp. BAL39] gi|149229792|gb|EDM35181.1| PAS [Pedobacter sp. BAL39] Length = 814 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 85/248 (34%), Positives = 135/248 (54%), Gaps = 9/248 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K ++ L A +AE+ S KS+FLA +SHEIRTPL IIGF++++ + Sbjct: 276 DITEKKAQERHLKQAIAMAEEASIAKSEFLANMSHEIRTPLNGIIGFADLVLKTELSEV- 334 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 ++Y ++ S N +L I+ND+LD SKIE+G+M LH E L E +A ++ Sbjct: 335 ---QLQYLTVVNESANSLLAIINDILDFSKIEAGRMELHLEASDLHELSCQAADIITFQI 391 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTT-HTSNEE 736 +K I + + ++P I D +KQ+ +N+LSNA FT +G ++ I + S E Sbjct: 392 QQKGIEMLLNVPLDLPESIWTDPLRLKQVIINLLSNAAKFTDTGEIELKIEVLEYLSAEA 451 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 R VRDTG+G+ + + + F Q S R GTGLGL ++ ++ + + Sbjct: 452 ARFRFSVRDTGIGIKLEKQREIFEAFAQEDVSTTKRYGGTGLGLTISNELLALMDSRLQL 511 Query: 795 FSTPAKGT 802 S+P G+ Sbjct: 512 MSSPGVGS 519 >gi|150395255|ref|YP_001325722.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium medicae WSM419] gi|150026770|gb|ABR58887.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium medicae WSM419] Length = 739 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 84/256 (32%), Positives = 136/256 (53%), Gaps = 14/256 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++E ++ A++ AE+ S KS LA VSHEIRTPL+ I+G S ++ R Sbjct: 204 RDVTEDMLAASQREEARQRAEEASRAKSRLLATVSHEIRTPLSGILGMSRLLAETRLSD- 262 Query: 619 GNPRYIEYANYI---DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 E NY+ +SG+ ++ +V DL+D S + +G+ L L + V + ++ Sbjct: 263 ------EQKNYLVGMQQSGHTLVQLVEDLIDFSSLAAGRFQLRPSQQDLRQTVENVVEML 316 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A+EK I I + A IP R+L D ++Q+ N++ NA+ FT GG +I + N Sbjct: 317 SPRAHEKGIEIGATVAIEIPERMLFDAARLRQVLFNVVGNAVKFTEKGG--VIVSVDIEN 374 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + +RV D+G GM+ L + + F Q + Q R +GTGLGL +++ +++A G Sbjct: 375 GSLRIRVDDSGPGMSADALARVFEEFEQAGDEAQ-RAKGTGLGLAISRRIMEAFGGSLTA 433 Query: 795 FSTPAKGTLIEIIFPL 810 S KG+ EI FP+ Sbjct: 434 TSVSGKGSRFEIRFPM 449 >gi|283853667|ref|ZP_06370899.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283570938|gb|EFC18966.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 676 Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 112/397 (28%), Positives = 188/397 (47%), Gaps = 45/397 (11%) Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 V+ R++ + + + Q+ +I A I I+NR+ ++++ N + + GY + L + Sbjct: 157 VEARLSVEREKSFLEQVITIAGAA---ICIVNRDDVVVTINDEFTAITGYSRDQALGRRR 213 Query: 498 TVFLEQNTPS---------VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 L ++ PS + ++IL+ D R+ + I+ Sbjct: 214 GELLRESPPSPCPARPGDASVQKRQSQILTRDGRR-----------------VTILKNAA 256 Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 P L I + + + L A+ AE+ S KS FLA +SHEIRTPL AI+G S+ Sbjct: 257 PIRDSQGLATGGIESFA-DVSDLIRARVEAEEASRMKSAFLANMSHEIRTPLNAIMGLSQ 315 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++ + GP +P+ E + +G +L ++ND+LD S+IE G++ + PV LD + Sbjct: 316 LL--LKTGP--SPQQRECLETMRSAGEGLLVVLNDVLDFSRIEVGRLEIRPVPVDLDRLL 371 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIII 727 E ++ A+E+ + + +PR+ + D +KQI LN+LSNAI FTPSG ++ Sbjct: 372 EEMRRIMAPAADERGLTLAIERDPKLPRVAVCDPVRLKQILLNLLSNAIKFTPSGRVVLA 431 Query: 728 ST------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 + + V RVRDTG G+ E+ +PF Q ++ GTGLGL ++ Sbjct: 432 AALPYPPKAEDAPTPVQFRVRDTGPGIPEELRERIFEPFVQADDAVARNHGGTGLGLSIS 491 Query: 782 KAMVDANMGK-FYIFSTPAKGTLIEIIFPLYDTSHPH 817 +V G + S P KG+ L HP Sbjct: 492 DRLVRLLGGAGLSVDSQPGKGSTFHFTLAL---EHPE 525 >gi|83647612|ref|YP_436047.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83635655|gb|ABC31622.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 652 Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 84/248 (33%), Positives = 140/248 (56%), Gaps = 15/248 (6%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ++ + E +L K AE E+ KS+FLA +SHE+RTPLTAI+G++E++ Q Sbjct: 131 LARREMETERLVRLK--AEAENRSKSEFLAHLSHELRTPLTAILGYTELLIAQN----SI 184 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P + + + R+G +L ++ND+LDISKIE+GK+ + F V+L +++ SL+ + A Sbjct: 185 PDNLSHLQIVQRNGQHLLSLLNDILDISKIEAGKLEMEFVRVNLQTYLADLYSLMAVSAR 244 Query: 681 EKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736 +K + +R F ++P I D ++Q+ LN++ NAI FT G+II+ EE Sbjct: 245 DKNLQLR--FIADMPLPENIETDPIRLRQVLLNLIGNAIKFTEQ-GEIIVRVQMIKEEEQ 301 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + +V DTG G+ + ++ +PF Q + R EG GLGL +++ + G + Sbjct: 302 EKIQFKVIDTGPGINQTDQKRLFQPFTQAYANSIRRSEGAGLGLAISRQLAQRLGGDIRL 361 Query: 795 FSTPAKGT 802 S P KG+ Sbjct: 362 SSQPGKGS 369 >gi|297537877|ref|YP_003673646.1| multi-sensor hybrid histidine kinase [Methylotenera sp. 301] gi|297257224|gb|ADI29069.1| multi-sensor hybrid histidine kinase [Methylotenera sp. 301] Length = 1239 Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 103/363 (28%), Positives = 165/363 (45%), Gaps = 29/363 (7%) Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 S +A + G IL N L GY +++ K ++F + S Sbjct: 533 STSVAEFSMNGTILDANATFLTLLGYEKNEVIGKHHSIFCSAQDAA----------SASY 582 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS-------------LTMHDISEWKQEK 568 R E + G + + L ++ + YS + M DI+E + + Sbjct: 583 RNKWEALNRGEFVQGEFKRLGKNGSEVWIHASYSPLLNADGKPSKVLMFMIDITERTRME 642 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 N L AK AE+ +S K+ FLA +SHEIRTP+ AIIGFSE++ + Y N Sbjct: 643 NDLKLAKDKAEQAASAKATFLANMSHEIRTPMNAIIGFSEIMMDTEM----QDEQRRYMN 698 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+ S +L ++ND+LD +K+E GK+ L SL E V +S + + A K + ++ Sbjct: 699 TINNSAKSLLHLLNDILDSAKLEKGKLELEIVDFSLYELVDSIVSTLWVQAKRKNLDLQL 758 Query: 689 SF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 N L ++QI +N+L N+I FT G + + N E+ + DTG+G Sbjct: 759 ELDPNTASYYLGAPDRIRQILMNLLGNSIKFTEH-GYVKLVVKQLDNHELSFSIIDTGIG 817 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + L+ +PF Q +S + GTGLG ++K +V+ G+ S G+ +I Sbjct: 818 IPQDRLDVIFEPFTQADSSMSRKFGGTGLGTTISKQLVELMGGRLTAKSEIGSGSCFTMI 877 Query: 808 FPL 810 PL Sbjct: 878 LPL 880 Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 4/86 (4%) Query: 432 GIEPEDVDTRINKRKMEIEVM----QLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 G+ ++ I R+M + +L +IL+ DGI I+ G ILS N A +LFG+ Sbjct: 246 GVLAASINALIRYRQMLRSLQNNQSRLSTILDTAVDGIITIDMNGRILSFNHAAEQLFGW 305 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYL 513 +I+ + + + + NH+L Sbjct: 306 QSAEIVGQDTAILMPKAYHVRHNHFL 331 >gi|288939999|ref|YP_003442239.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288895371|gb|ADC61207.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1023 Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 99/264 (37%), Positives = 146/264 (55%), Gaps = 26/264 (9%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK AE + KS FL+ +SHEIRTP+ AIIG+S +I+ + PL PR E N Sbjct: 257 ELEAAKVAAEGANRAKSAFLSNMSHEIRTPMNAIIGYSHLIRQE---PL-TPRQTEQLNR 312 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRILI 686 ++ S +L I+ND+LD+SKIE+ K+ L FEP + + V ++ Q+ A E +L+ Sbjct: 313 LNDSAQHLLQIINDILDLSKIEAEKLTLEARDFEPARVLDHVFNLVA-DQIQAKELNVLV 371 Query: 687 RTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--------NEEV 737 +++P R+ D + QI LN++SNA+ FT GQI I+ S E + Sbjct: 372 DL---DHVPLRLHGDGVRLGQILLNLISNAVKFTER-GQIAIAVYPMSVPLAGAADPETL 427 Query: 738 ILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 LR VRDTG+GMT +L + + F Q S R GTGLGL ++K + + G+ Sbjct: 428 WLRWTVRDTGIGMTAEQLARLFRAFEQADGSTTRRYGGTGLGLAISKRLTELMGGRIGAS 487 Query: 796 STPAKGT--LIEIIF-PLYDTSHP 816 S P G+ +EI F P + +HP Sbjct: 488 SQPGTGSEFWLEIPFEPAREPAHP 511 >gi|300777936|ref|ZP_07087794.1| PAS/PAC domain protein [Chryseobacterium gleum ATCC 35910] gi|300503446|gb|EFK34586.1| PAS/PAC domain protein [Chryseobacterium gleum ATCC 35910] Length = 1302 Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 90/255 (35%), Positives = 144/255 (56%), Gaps = 11/255 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L +AKK+A+ S KS+FLA +SHEIRTPL +IGFS+++ PL N +Y NY Sbjct: 658 ELKNAKKMADIASQAKSEFLANMSHEIRTPLNGVIGFSDLLLKT---PL-NEIQTQYLNY 713 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+ SG +L I+ND+LD SKIESGKM L E ++ + VS+ I+++ + +K I + + Sbjct: 714 INESGENLLSIINDILDFSKIESGKMELSIEKANVYDIVSQVINVILYQSQKKNIELLLN 773 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTG 745 +P I D +KQI +N+L NA+ FT G ++ + ++ + LR VRDTG Sbjct: 774 IEPGLPETIWLDESRLKQILINLLGNAVKFTQEGEIELKVEKLSIESKNITLRFSVRDTG 833 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT--L 803 +G+ + + F Q +S + GTGLGL ++ +++ + S +G+ Sbjct: 834 IGIPKEKQKHIFNAFTQENSSISKKYGGTGLGLTISNNILNYMGSSLSLVSELHQGSTFY 893 Query: 804 IEIIFPLYDTSHPHD 818 +I P Y+ S H+ Sbjct: 894 FDIQVP-YEMSERHE 907 >gi|159897746|ref|YP_001543993.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159890785|gb|ABX03865.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 1877 Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 87/253 (34%), Positives = 145/253 (57%), Gaps = 17/253 (6%) Query: 571 LSHAKKIAEKESSH---------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 L +A+ AE+ ++ KS FLA +SHE+RTPL +I+GF+EVI GP+ + Sbjct: 1608 LQNARLFAEQTATMQRLQELDQLKSAFLANMSHELRTPLNSILGFTEVILEGINGPINDL 1667 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + + + I R+G +L+++ND+LD++KIESGK+ L E + E + E S V A + Sbjct: 1668 IHNDLS-IIHRNGRHLLNLINDILDMAKIESGKLTLFRETFDVVEVLHEVASTVGPLATQ 1726 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVIL 739 K + + N+ + AD ++Q+ LNI+ NA+ FT G I I TT T+ ++ Sbjct: 1727 KHLELLVDIEPNLKLPVYADRFRIRQVLLNIVGNALKFTEQGSVTIGIDTTPTTR---MI 1783 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-- 797 +++DTG+G+ + F Q+ NS + GTGLGLP+++ +V+ + GK + S+ Sbjct: 1784 KIQDTGIGIPLDNQDTIFMEFHQVDNSTTRKAGGTGLGLPISRHLVEMHGGKLSMVSSGN 1843 Query: 798 PAKGTLIEIIFPL 810 P +G+L I P+ Sbjct: 1844 PGEGSLFTIELPI 1856 >gi|322831385|ref|YP_004211412.1| multi-sensor hybrid histidine kinase [Rahnella sp. Y9602] gi|321166586|gb|ADW72285.1| multi-sensor hybrid histidine kinase [Rahnella sp. Y9602] Length = 916 Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 84/238 (35%), Positives = 136/238 (57%), Gaps = 10/238 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + +K PL +P +Y Sbjct: 277 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKT----PL-SPTQADYLQ 331 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS N +L I+ND+LD SK+E+GK+ L P SL E + E + L+ A++K + + Sbjct: 332 TIERSANHLLTIINDVLDFSKLEAGKLVLEHIPFSLREMLDEVVILLAHTAHDKGLELTL 391 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDT 744 + NN+P +L D ++Q+ N+L NAI FT +G I + N E+ +++ DT Sbjct: 392 NVHNNVPENVLGDPMRMQQVVTNLLGNAIKFTETGNIDINVELRSQNNLQVELEVQIHDT 451 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G++ + + + F Q S R GTGLGL + + +V G +S +G+ Sbjct: 452 GIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFYSQLNRGS 509 >gi|254477960|ref|ZP_05091345.1| sensor histidine kinase/response regulator [Ruegeria sp. R11] gi|214028545|gb|EEB69381.1| sensor histidine kinase/response regulator [Ruegeria sp. R11] Length = 760 Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 86/263 (32%), Positives = 138/263 (52%), Gaps = 8/263 (3%) Query: 557 TMHDISEWKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + D E + E+ L A+K A+ + KS+FLA +SHEIRTP+ +IG +E+I Sbjct: 211 VLEDTFEERDEREFALEDARKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILET-- 268 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 L + + + YA I +SG+ +L I+ND+L+ SKIE+GKM L P +L A+ + ++L+ Sbjct: 269 -DLDDDQKM-YAETISKSGSALLTIINDILNFSKIEAGKMELDRAPFNLQTAIEDVVTLL 326 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A EK + + + +P D+ ++QI NI NA+ FT +G I + HT+ Sbjct: 327 SPKAAEKNVEVTLRYDPGLPEFFEGDVGRIRQILTNIAGNAVKFTSAGYVYIEVSGHTAG 386 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 LR V+DTG G+ +L F Q+ + EGTGLGL ++ ++ G Sbjct: 387 GYSDLRISVKDTGTGIPADQLNSIFNAFEQVDGAATRNFEGTGLGLAISTRLLGMMGGTV 446 Query: 793 YIFSTPAKGTLIEIIFPLYDTSH 815 + S +G+ + PL H Sbjct: 447 SVTSVLGEGSTFTVELPLKVREH 469 >gi|67921588|ref|ZP_00515106.1| PAS [Crocosphaera watsonii WH 8501] gi|67856700|gb|EAM51941.1| PAS [Crocosphaera watsonii WH 8501] Length = 1249 Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 110/393 (27%), Positives = 191/393 (48%), Gaps = 49/393 (12%) Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGII-------LSTNRAVSKLFGYPVEDI 492 TR + +E + L +I++ DG+ +++ G I LS S L G V DI Sbjct: 880 TRKQSQTLERTLADLNAIVDNLGDGLLVVDSFGRITRHNPKLLSMFNVTSSLLGKRVVDI 939 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 P +F P + E++++++ L + + + L+ RII ++ Sbjct: 940 F--PSELFPLLKKPGLEQE---EVVTVEM-------PLANNRLGQALASRIIKQEEETGI 987 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 Y + I + +E+ K +FL+ VSHE+RTPLT+I+GFS +I++ Sbjct: 988 KYLGVVILIRDITKER-----------AVDQMKKNFLSMVSHELRTPLTSIVGFSSLIRD 1036 Query: 613 QR----FGPLGNPRYIEYANYIDR----------SGNLVLDIVNDLLDISKIESGKMNLH 658 + F + NP + +N I+R G + +V+D LD++KIESGK+ L+ Sbjct: 1037 KLNETIFPEIQNPDS-KTSNAIERIQQNLDIVVCEGERLSKLVHDFLDMTKIESGKITLN 1095 Query: 659 FEPVSLDEAVSEAISLVQ-LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717 P+ + AI V L++N L+ F+ ++P IL D + Q+ +N++SNA+ Sbjct: 1096 LFPIQPSTVLDWAIGSVSPLFSNSSVELVE-DFSRDLPTILGDEDRLIQVFVNVISNALK 1154 Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 FT G + +E +++ + DTG+G+ + K PF Q+ N + GTGLG Sbjct: 1155 FTEKGS--VTCRAEVDHENLLISITDTGIGIAENDYSKVFDPFQQVGNVLTNKPPGTGLG 1212 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 L ++K +V+ + G ++ S +GT I FPL Sbjct: 1213 LSISKQIVEQHGGNIWLTSKLGQGTTFFISFPL 1245 >gi|152995279|ref|YP_001340114.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150836203|gb|ABR70179.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 936 Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 84/245 (34%), Positives = 143/245 (58%), Gaps = 13/245 (5%) Query: 566 QEKNKLSH-AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +EK+ H A + A + + KS FLA +SHE+RTPL AI+G+++ ++ + + + Sbjct: 278 EEKSAQLHIANREAMESNRLKSQFLANISHEVRTPLNAILGYTKTLQKD----ITDTQQR 333 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQLYANE 681 Y + I++S N +L I+ D+LD SKIE+GK+NL HF +L + V + +S + L E Sbjct: 334 LYVDTIEQSTNSLLTIIGDILDFSKIEAGKLNLESNHFNLKTLLDDVYQILS-INLLTKE 392 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL 739 K+I + F+ ++P + D V+QI N++ NAI FT G + +S + +E+ L Sbjct: 393 KQIDLVPEFSQDVPEWFVGDSTRVRQILTNLIGNAIKFTHQGSVRTKVSIASQTPQEITL 452 Query: 740 --RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 ++ DTG+G+ +++ + KPF Q+ S + GTGLGL + K +V+ GK + S Sbjct: 453 SFQIIDTGIGIAEHKINRLFKPFSQVDTSTTRQFGGTGLGLVITKKLVEQMNGKIEVSSD 512 Query: 798 PAKGT 802 P+ G+ Sbjct: 513 PSIGS 517 >gi|213416867|ref|ZP_03350011.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 735 Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 134/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + NP ++ N Sbjct: 144 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTEL----NPTQRDHLNT 199 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 200 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLN 259 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 N++P ++ D ++Q+ N++ NAI FT SG I++ SN +V + V RDTG Sbjct: 260 IKNDVPENVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTG 319 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 320 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 376 >gi|115522493|ref|YP_779404.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] gi|115516440|gb|ABJ04424.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] Length = 843 Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 84/262 (32%), Positives = 134/262 (51%), Gaps = 4/262 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT D ++ + + L + E K F+ VS+E+R+PLT IIGF+ + + Sbjct: 583 LTFQDNTDTENVERALRERNEALETADQMKVKFVHHVSYELRSPLTTIIGFAHFLADAST 642 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GPL + EY +YI S N +L I+N++LD++ I++G M L+ PV + +A+ A+ + Sbjct: 643 GPL-TEKQAEYLSYITTSTNALLAIINNILDLATIDAGAMALNLGPVDIRKAIDAAVEGI 701 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 Q I + I R LAD R V Q+ N+L+NA+ F+P G I + S + Sbjct: 702 QDRLARDHIRLEIEVDPEIGRFLADERRVVQVLYNLLANAVGFSPEHGAITLKAAR-SEK 760 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 EV+ V D G G+ +K F +S+ R G GLGL L ++ V+ + GK + Sbjct: 761 EVVFTVIDKGPGIPPEVKDKVFDWFES--HSKGSRHRGAGLGLSLVRSFVELHGGKVEVN 818 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S +GT + FP+ + H Sbjct: 819 SVLGQGTTLTCSFPIDQSQQRH 840 >gi|291541286|emb|CBL14397.1| Signal transduction histidine kinase [Roseburia intestinalis XB6B4] Length = 903 Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/269 (28%), Positives = 144/269 (53%), Gaps = 13/269 (4%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKI------AEKESSHKSDFLARVSHEIRTPLTAI 603 F +++ + +I E KQ KN++ H + E K DF+A +SHEIRTPL +I Sbjct: 146 FMQFFAIIILEIMENKQLKNRIQHDMEFNETMRELEDAKQAKDDFMANISHEIRTPLNSI 205 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 IG + + + + + I +G ++ +V+D+LD S++E+ M L EP + Sbjct: 206 IGIGSELLDAKVDDTTKEQLYD----ITVAGRNLMSLVSDILDFSELENDTMELVEEPYN 261 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG 722 + +++ +++ ++ EK + I +IP +L D + + +I LN+++NAI FT +G Sbjct: 262 ITSVINDVVNMAHVWNKEKNLEIIVDCEADIPNNLLGDSQKIYRIILNLINNAIKFTDAG 321 Query: 723 GQIII--STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 G I+ + + ++++V+DTG+GM+ ++ + Q+ ++ R G GLGL + Sbjct: 322 GVILFVGARKESYGINLMVKVKDTGIGMSEKNIDALENTYNQVDTTRDRRAGGIGLGLAI 381 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ M+ G +I S P GT + II P Sbjct: 382 SRKMIAKMNGHMHIESVPDAGTTVSIIIP 410 >gi|254470389|ref|ZP_05083793.1| TMAO reductase sytem sensor TorS [Pseudovibrio sp. JE062] gi|211960700|gb|EEA95896.1| TMAO reductase sytem sensor TorS [Pseudovibrio sp. JE062] Length = 964 Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 132/249 (53%), Gaps = 5/249 (2%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + ++E +L A+K AE+ + KS FLA +SHEIRTP+ I+G + ++K+ + N Sbjct: 453 QLEEEAVRLEKARKQAEEANRAKSTFLATMSHEIRTPMNGILGTTSLLKDTQL----NTE 508 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + I SGN++L I+ND+LD SKIE+G++ P S+ + I+L A EK Sbjct: 509 QQRLTSTIAESGNVLLCILNDILDYSKIEAGQLTFEQIPFSVHTIIERLITLFTPLAQEK 568 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + + A+N+P L D + Q+ N+LSNAI FT GG + T +++ E+I V Sbjct: 569 DLSLTYHVADNVPDGSLGDPARLYQVLSNLLSNAIKFTEVGGIQLQVTANSTQSELIFSV 628 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G+G+ ++ F Q +S R GTGLGL + ++ G + S KG Sbjct: 629 IDSGIGIPKDKISSLFDAFSQAEDSTSRRYGGTGLGLAICDKLIKGMQGTVSVESELHKG 688 Query: 802 TLIEIIFPL 810 + P+ Sbjct: 689 STFTFTLPM 697 >gi|120553437|ref|YP_957788.1| histidine kinase [Marinobacter aquaeolei VT8] gi|120323286|gb|ABM17601.1| amino acid-binding domain sensor histidine kinase [Marinobacter aquaeolei VT8] Length = 922 Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 81/264 (30%), Positives = 141/264 (53%), Gaps = 23/264 (8%) Query: 565 KQEKNKLSHAKKIAEK-------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 ++ +++L AK AE+ S KS+FLA +SHEIRTP+ A+IG+S+++ N Sbjct: 553 RRSEDELRAAKLEAERLAREAEAASRAKSEFLANMSHEIRTPMNAVIGYSDLLYNS---- 608 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + +P+ Y N I +L ++ND+LD+S+IE+GKM L F PVS+ +S+ + L Sbjct: 609 VTDPQQRNYLNAIRAGSRSLLMLINDILDLSRIEAGKMRLDFGPVSVRRLLSDVRHIFDL 668 Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE- 735 A E+ I + S + +P ++ D ++Q+ N++ NAI FT GG + + E Sbjct: 669 RATEQGITLEVSVGSGMPSAMMLDETRLRQVLFNLVGNAIKFTHEGGVTVRAVAKPLGEP 728 Query: 736 ----------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 +++ V DTG+G+ + E+ + F Q R GTGLGL +++ +V Sbjct: 729 ADADSEVCYYRLVVTVADTGIGIAPDQQERIFEAFEQQEGQSSRRYGGTGLGLAISRKLV 788 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + G+ + S G+ +++ P Sbjct: 789 EMMGGRLTVKSEANVGSTFKVVLP 812 >gi|331010550|gb|EGH90606.1| PAS protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 638 Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 111/373 (29%), Positives = 181/373 (48%), Gaps = 39/373 (10%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT---------- 505 +++E T I + +REG++ N + ++F EDI+ K T + N Sbjct: 16 ALVEGTPHPIYVRDREGMLRMCNDSYLRVFSAQREDIIGKSATEGVLGNAFEAREYAADY 75 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH------ 559 VM IL LR ++T I LPF Sbjct: 76 QRVMASNTALILDRPLRIGDRQMT-------------IYHWILPFRDSLGEVQGIIGGWI 122 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DISE +Q L AK+ A+ S KS FLA +SHEIRTP+ A+IG E+ +K G L Sbjct: 123 DISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHGEL 182 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + IE A S N +LD++ D+LDI++IESG+++L+ E +L V + + Sbjct: 183 -DRSAIEVAYS---SANDLLDLIGDILDIARIESGRLSLNPERANLRRLVESVLRVFDGL 238 Query: 679 ANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE 736 A +K + + + I +L D KQI N++SNAI FTP G +I++ + + + Sbjct: 239 ARQKDLDLVLELDSRINADVLIDPLRFKQILSNLVSNAIKFTPMGRIKIVLQAAESPDPQ 298 Query: 737 VI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ + V+D+G+G++ + ++ +PF Q N+ Q+ G GLGL + +++ G Sbjct: 299 LLHLHITVQDSGIGISAEDQQRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMMGGNLS 358 Query: 794 IFSTPAKGTLIEI 806 + S P +GT I + Sbjct: 359 LDSVPGQGTRISM 371 >gi|323528784|ref|YP_004230936.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] gi|323385786|gb|ADX57876.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] Length = 941 Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/240 (32%), Positives = 137/240 (57%), Gaps = 6/240 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ +L+ AK+ A+ + KSDFLA +SHE+RTPL I+G++++++ + R Sbjct: 462 RERTAELAVAKEHADAANQAKSDFLAHMSHELRTPLNGILGYAQILRRDKNL---EQRQA 518 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I RSG +L I+ND+LD++KIE+GK++L+ V L+ + ++L A EK + Sbjct: 519 DGIAVIQRSGEHLLAIINDILDMAKIEAGKVDLYLSDVLLERFIYFIAGTIRLKATEKGL 578 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 A +P + D + ++Q+ LN+LSNAI FT + G + + T + V+D Sbjct: 579 AFSCDMAPGLPAAVRVDEKRLRQVLLNLLSNAIKFTET-GSVCLRVDWTPPTRLRFEVQD 637 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ E +PF Q+ +++ G GTGLGL +++ +V G+ ++ S G++ Sbjct: 638 TGIGIEEAHRETIFRPFEQVSDARHRVG-GTGLGLAISRQLVRLMGGEIHVESRRGGGSI 696 >gi|304319955|ref|YP_003853598.1| hypothetical protein PB2503_01892 [Parvularcula bermudensis HTCC2503] gi|303298858|gb|ADM08457.1| hypothetical protein PB2503_01892 [Parvularcula bermudensis HTCC2503] Length = 579 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 85/267 (31%), Positives = 139/267 (52%), Gaps = 14/267 (5%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L DI+ K + LS A + K+ F+A +HE+RTPL A+IGFS++++++ F Sbjct: 315 LVWSDITAIKAREEDLSAANE-------AKTRFMAVTTHELRTPLNAVIGFSQLMRDEAF 367 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE---PVSLDEAVSEAI 672 GPLG+ Y ++A I +GN +L +V+D+L S ++ E P L A+ E + Sbjct: 368 GPLGDESYQQFAREIFEAGNTLLGLVDDILRFSDAQNTDYYADLELVAPAPLFHALCEGV 427 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + Y + + + T + + I A + ++L NA F+ GG ++ Sbjct: 428 RYDEHYTS---LTLETIIDDTLQEIRAKPSHLTSALRHLLINAGQFSDEGG-LVSFIAKD 483 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + V++ ++D G GM+ LE+A++ FGQ NS+ EG GLGLPLA+ +V ++ G F Sbjct: 484 CGDTVVVTIKDRGKGMSAEALERALELFGQADNSRTRHHEGMGLGLPLARTIVLSHRGTF 543 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHPHDC 819 I S +GT I II P + D Sbjct: 544 DIESLAGEGTTITIILPYAEGEMAEDT 570 >gi|256828766|ref|YP_003157494.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577942|gb|ACU89078.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 737 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 85/265 (32%), Positives = 135/265 (50%), Gaps = 8/265 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L D + Q +L AK+ AE S KS FLA SHEIRTP+ AIIG ++V+ N + Sbjct: 39 LQHEDAAGLTQLVAELDRAKQQAESASRMKSQFLANFSHEIRTPMNAIIGMTDVVLNTKV 98 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P + + +L+++N +LD+SKIE+G+ L P L V +S + Sbjct: 99 ----TPEQHRALTIVKNASESLLNLINGVLDLSKIEAGQFALEVRPFDLRAEVERTVSTL 154 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TS 733 L A EK + + ++PR + D ++Q+ +N+L NA+ FTPSG + Sbjct: 155 GLTAAEKGLELICRLPPDMPRHMQGDPIRLRQVLMNLLGNALKFTPSGHVCCSCQVEPKA 214 Query: 734 NEEVILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 ++ ++R R DTG+G+ +L + F Q+ +S GTGLGL +++ +V G Sbjct: 215 GDDCVVRFRIEDTGIGIPADKLGTIFEDFTQVDSSSTRVYGGTGLGLSISRKLVQLMGGD 274 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHP 816 ++ STP +G+ E L S P Sbjct: 275 IFVQSTPGQGSAFEFHARLGQVSLP 299 >gi|125974329|ref|YP_001038239.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum ATCC 27405] gi|256003451|ref|ZP_05428441.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum DSM 2360] gi|125714554|gb|ABN53046.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum ATCC 27405] gi|255992475|gb|EEU02567.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum DSM 2360] gi|316941476|gb|ADU75510.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM 1313] Length = 932 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 83/257 (32%), Positives = 141/257 (54%), Gaps = 8/257 (3%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 F+ Y +++ K+ + + A+ A+K + KS+FLA +SHEIRTP+ +IIG+ + Sbjct: 304 FNELYRSFHNELVRRKKAEETMKAARDEADKANRAKSEFLASMSHEIRTPINSIIGYQYL 363 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 +KN + +P+ EY I + +L I+N +LD SKIE+G+M L ++D+ ++ Sbjct: 364 LKN----SVLSPKQREYVENIGLAAKNLLAIINQILDFSKIEAGRMVLEEVDFNIDDVLN 419 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 E + +V + A K I +R ++PR L D+ +KQ+ +N++SN I FT G I Sbjct: 420 ELMIIVGMEAKRKGIELRIKVDEDVPRFLKGDITRLKQVVMNLVSNGIKFTHEGYISIRV 479 Query: 729 TTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 NEE + V DTG+G+++ + + + F Q S + GTGLGL + K +V Sbjct: 480 ELVEKNEENACIKFSVTDTGIGISDEQKKLLFQAFTQGDASTSRKYGGTGLGLAICKRLV 539 Query: 786 DANMGKFYIFSTPAKGT 802 + G+ + S KG+ Sbjct: 540 ELMKGEINVESEVGKGS 556 >gi|291534446|emb|CBL07558.1| Signal transduction histidine kinase [Roseburia intestinalis M50/1] Length = 898 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/269 (28%), Positives = 144/269 (53%), Gaps = 13/269 (4%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKI------AEKESSHKSDFLARVSHEIRTPLTAI 603 F +++ + +I E KQ KN++ H + E K DF+A +SHEIRTPL +I Sbjct: 141 FMQFFAIIILEIMENKQLKNRIQHDMEFNETMRELEDAKQAKDDFMANISHEIRTPLNSI 200 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 IG + + + + + I +G ++ +V+D+LD S++E+ M L EP + Sbjct: 201 IGIGSELLDAKVDDTTKEQLYD----ITVAGRNLMSLVSDILDFSELENDTMELVEEPYN 256 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG 722 + +++ +++ ++ EK + I +IP +L D + + +I LN+++NAI FT +G Sbjct: 257 ITSVINDVVNMAHVWNKEKNLEIIVDCEADIPNNLLGDSQKIYRIILNLINNAIKFTDAG 316 Query: 723 GQIII--STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 G I+ + + ++++V+DTG+GM+ ++ + Q+ ++ R G GLGL + Sbjct: 317 GVILFVGARKESYGINLMVKVKDTGIGMSEKNIDALENTYNQVDTTRDRRAGGIGLGLAI 376 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ M+ G +I S P GT + II P Sbjct: 377 SRKMIAKMNGHMHIESVPDAGTTVSIIIP 405 >gi|153872278|ref|ZP_02001216.1| sensor histidine kinase/response regulator [Beggiatoa sp. PS] gi|152071255|gb|EDN68783.1| sensor histidine kinase/response regulator [Beggiatoa sp. PS] Length = 623 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 86/260 (33%), Positives = 141/260 (54%), Gaps = 21/260 (8%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF---GPLGNP 621 +Q+ +L AKK+AE + KS FLA +SHE+RTP+ AI+GFS++++ + N Sbjct: 329 EQQTIELISAKKVAETANQSKSLFLANMSHELRTPMNAILGFSQLMERDQAITSTQQNNL 388 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 R I+ RSG +L ++ND+LD+SKIESG+M L E L + + + ++ + A Sbjct: 389 RIIQ------RSGEHLLSLINDVLDMSKIESGRMTLETESCDLPQTLKDIADMIHIRAKN 442 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII------ISTTHTSN 734 K +L + + I D+ ++QI +N+L NAI +T GG + ++TT S Sbjct: 443 KNLLFTWEYDPKLAHYIKTDVGKLRQILINLLGNAIKYTHEGGLSLRVHSKEMATTSASE 502 Query: 735 E----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + V + V D+G G+ E++K F Q+ +S+ I EGTGLGL + + + G Sbjct: 503 KPYQHRVYVEVEDSGAGIGPEEVDKIFDAFVQVSSSKGI-SEGTGLGLSITRRYIQMMGG 561 Query: 791 KFYIFSTPAKGTLIEIIFPL 810 + S KG+L + P+ Sbjct: 562 DIRVMSELGKGSLFKFDIPV 581 >gi|212634200|ref|YP_002310725.1| hybrid sensory histidine kinase BarA [Shewanella piezotolerans WP3] gi|212555684|gb|ACJ28138.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A:Hpt [Shewanella piezotolerans WP3] Length = 935 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 89/252 (35%), Positives = 138/252 (54%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A + S KS+FLA +SHE+RTPL +IGF+ +++K PL + + +Y Sbjct: 288 ELDMAKKRALEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKT----PLHSSQQ-DYIR 342 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS +L I+ND+LD SK+E+GKM L P SL E + E ++++ A EK I + Sbjct: 343 TIERSATNLLSIINDILDFSKLEAGKMVLENMPFSLREVIEETVTMLSSSAREKEIDLVI 402 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDT 744 IP + D Q+ N++ NA+ FT SG Q+ + ++ V +R + DT Sbjct: 403 DVDPRIPEDVTGDAMRFSQVITNLVGNAVKFTDSGSVQLKMQLEEIADGSVHVRTEIIDT 462 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ +L + FGQ +S R GTGLGL + K +V+ G+ S P +G+ Sbjct: 463 GIGIDADKLASLFQAFGQADSSISRRFGGTGLGLVITKRLVNRMGGQIGCNSEPQQGSTF 522 Query: 805 EIIFPLYDTSHP 816 PL + +P Sbjct: 523 WFSLPLNLSQYP 534 >gi|221133477|ref|ZP_03559782.1| aerobic respiration control sensor protein ArcB [Glaciecola sp. HTCC2999] Length = 785 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 131/500 (26%), Positives = 235/500 (47%), Gaps = 39/500 (7%) Query: 341 LFYANPSFLLLTKYKSVDDIE--IAGGLSTLLDAPKLSD--NNAIKPVMLYRSDRTCIAA 396 +F S+++ + SV +E ++ + T+L AP + + +K + L R + Sbjct: 36 IFTIGGSYVIRVSFGSVPSLEDFLSAVILTMLSAPWILYFFSELVKQLELSRVHLKEVIE 95 Query: 397 ---SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE-DVDTRINKRKMEIEVM 452 S R + NRE + + FE + + + + E +++ R +K + EI+ Sbjct: 96 ELESLREEDVLLNRELQNNIKQLNFEIEQRKDAQLEREKVFKELEIEIR-DKSEQEIQAR 154 Query: 453 QLC----SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPS 507 +L SI++A+ D I N EG NR +L G +++L P V+ E+ Sbjct: 155 RLSTLLRSIIDASPDLIYFRNEEGKFAGCNRVAEELTGRTQDELLGLTPHEVYDEELANQ 214 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567 V E+L ++ T E L + + +R K+PF + ++ + ++ Sbjct: 215 VARSD-NEVLEKNISVTEELWLLFPDGKRRYFEMR----KVPFFDHEGERLGLLA-FGRD 268 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + A+K EK S K+ F+A +SHE+RTPL I+G S ++++ + Sbjct: 269 MTERMKAEKAVEKASKDKTKFIATISHELRTPLNGIVGLSRMLRDTEL----TEEQFTWI 324 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + I S + +I ND++D+ K+E K+ L ++ +SL+ +E S+++L A +K + Sbjct: 325 STIYASAITLGNIFNDIIDLDKLERDKIALSYKTLSLETFTAELSSVIELLAADKGL--- 381 Query: 688 TSFANNIPRILADLRSV-----KQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----V 737 F +NI + L D V +QI N+L NA+ FTP G Q+ +S + T ++ V Sbjct: 382 -QFVSNIIKPLPDFVQVDGTRLRQILWNMLFNAVKFTPKG-QVSLSVSATVQDDNKTANV 439 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 ++DTGVG+ +++K + Q+ + GTG+GL + K MVD G + S Sbjct: 440 CFDIQDTGVGIPQADIDKIFAMYYQVDHPDHQSATGTGIGLAICKEMVDRMNGHIEVQSE 499 Query: 798 PAKGTLIEIIFPLYDTSHPH 817 KGT I PL + P Sbjct: 500 VGKGTRFLINIPLQISEKPR 519 >gi|88797996|ref|ZP_01113583.1| two component sensor kinase [Reinekea sp. MED297] gi|88779193|gb|EAR10381.1| two component sensor kinase [Reinekea sp. MED297] Length = 1120 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 80/258 (31%), Positives = 139/258 (53%), Gaps = 8/258 (3%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + +I + L AK++AE ++ KS +L+ +SHE+RTPL +I+G+++++ +Q P Sbjct: 647 LQEIEAHQVTDAALQTAKELAENANAAKSRYLSGISHELRTPLQSILGYTQLLNDQ---P 703 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 P N I RSG + D++ LLD+SKIE+GK++LH V+ E V + + ++ Sbjct: 704 DTTPSSRTRLNAIHRSGQYLADLIEGLLDVSKIEAGKLDLHLTSVAFPELVQQIADMFRM 763 Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A K I RT +P + D + ++QI +N+LSNA+ +T G + T ++ Sbjct: 764 QAKAKGIEFRTDIQGTLPAWVKTDEKRLRQILINLLSNAVKYTDDG--YVRLTLRYRSQV 821 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V DTG G+ + ++ PF ++ N R GTGLGL + K +V+ G + S Sbjct: 822 AEFTVEDTGHGIAEDQHQRVFSPFERVENEASSRIPGTGLGLTIVKLLVEIMGGDIQLSS 881 Query: 797 TPAKGT--LIEIIFPLYD 812 + +G+ + ++ P D Sbjct: 882 SIGQGSRFTVSLMLPWLD 899 >gi|329888454|ref|ZP_08267052.1| sensory box protein [Brevundimonas diminuta ATCC 11568] gi|328847010|gb|EGF96572.1| sensory box protein [Brevundimonas diminuta ATCC 11568] Length = 536 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 106/370 (28%), Positives = 180/370 (48%), Gaps = 23/370 (6%) Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 + L + + + D + I + EG I+ + + + + GY E+++ P + P M Sbjct: 23 VDLATFFDVSLDLLVIRDLEGRIVRVSASWASILGYRPEELVGLPILTLVH---PDDMPG 79 Query: 512 YLTEILSLDLRQTLEKITLGST-----KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566 L + ++ R+ + + LG K+ + ++L +K F D++ Sbjct: 80 TLGSVTEVETRRPGDPV-LGHVNRYRHKDGRYVTLEWRAQK--FGDRIYAVARDVTAKVA 136 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + L AK AE + KSDFLA +SHEIRTPL +IG + + PL +P+ E Sbjct: 137 AERALVEAKAAAETANRAKSDFLANMSHEIRTPLNGVIGVIDALART---PL-SPQQAEM 192 Query: 627 ANYIDRSGNLVLD-IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + RS ++ L+ +V D+LD+S+IESG+M L P L++A+ AI+ ++ A EK + Sbjct: 193 VELV-RSSSVTLERLVTDILDVSRIESGRMTLETRPFDLNDALIPAIAPLRGLAEEKGLT 251 Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILR 740 R A + + D+ V+QI N+LSNA+ FT + GQ+ + + + L Sbjct: 252 FRLERAESACGVFNGDVVRVRQILGNLLSNAVKFT-AQGQVSVHVDLLDRGDGAVLLTLE 310 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 VRDTG+G + + F Q S R G GLGL + A+ + G+ S P + Sbjct: 311 VRDTGIGFGADHAAQLFQRFSQADASITRRFGGAGLGLSICHALTEMMGGRIEAESAPGE 370 Query: 801 GTLIEIIFPL 810 G+ ++ PL Sbjct: 371 GSRFQVELPL 380 >gi|94264236|ref|ZP_01288031.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE [delta proteobacterium MLMS-1] gi|93455347|gb|EAT05551.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE [delta proteobacterium MLMS-1] Length = 794 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 87/261 (33%), Positives = 143/261 (54%), Gaps = 13/261 (4%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI--KNQR 614 + DI+ K+E+ +L A+ A+ + KS+FLA +SHE+RTPL AIIG+SE++ + + Sbjct: 534 VIFDITNRKREERELVEARDAAKAANQAKSNFLANMSHELRTPLNAIIGYSEILLEEAEE 593 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 G G I+ I + +L ++N++LD SK ESG+++L E LDE ++ + + Sbjct: 594 HGLEGCAEDIQ---RIREAARHLLGLINEVLDFSKTESGRISLTMEECDLDELMAAVVDI 650 Query: 675 VQ--LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST--- 729 ++ L E R+L+ T + I D ++QI N+LSNA FT G I + T Sbjct: 651 IRPLLPERENRLLVETE--EELGTIRTDGTRLRQILYNLLSNAAKFTEK-GFITLRTRRL 707 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 E V + ++DTG+G++ + +K KPF Q +S R GTGLGL +++ Sbjct: 708 MRDGGEWVEIDIQDTGIGISEEQQKKLFKPFTQADSSISRRFGGTGLGLAISRYFCRMMG 767 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G + STP +G+ + P+ Sbjct: 768 GDIALVSTPGQGSTFTVSLPV 788 >gi|288553692|ref|YP_003425627.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4] gi|288544852|gb|ADC48735.1| two-component sensor histidine kinase involved in phosphate regulation [Bacillus pseudofirmus OF4] Length = 593 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 106/383 (27%), Positives = 190/383 (49%), Gaps = 51/383 (13%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 +I KR E + +L +++ G+ IN G I N+ ++F Sbjct: 236 QITKRH-EAQQERLETLINNMGSGLIFINTRGDISLINQKCHEIF--------------- 279 Query: 501 LEQNTPSVMNHYLTEILS----LDLRQTL--------EKITLGSTKEEKLLSLRI--IIK 546 E+NT +N E+ + + QT+ E+I L + + K ++ I+ Sbjct: 280 -EENTDKWLNQLYHEVFKSKELIKIVQTIFITEKRHREQIQLVTGIDTKHFDIQAAPILS 338 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 ++ L +HDI+E K KL +K DF+A VSHE++TP+T+I GF Sbjct: 339 EMGMVKGIVLVLHDITELK----KLEQVRK----------DFVANVSHELKTPVTSIKGF 384 Query: 607 SEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 SE + + G + +P Y+E + I + + ++ DLL++SK+E L++ L Sbjct: 385 SETLLD---GAMADPAYMEKFLTIIHKESERLQSLIQDLLELSKLEQHYFRLNWGRAELT 441 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + V +A+ L++ A K I + A+++ + D +KQ+A+N++SNAI +TP+ G+I Sbjct: 442 KIVQDAVELLRPKAEAKEIALSLHAASSVE-MDGDSERLKQVAINLISNAITYTPNHGEI 500 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 +S T ++ ++ V D G+G+ + EL + + F ++ ++ GTGLGL + K +V Sbjct: 501 NVSVTQ-DHQSILFTVSDNGIGIESSELPRIFERFYRVDRARSRNSGGTGLGLAIVKHLV 559 Query: 786 DANMGKFYIFSTPAKGTLIEIIF 808 +A+ GK + S GT I F Sbjct: 560 EAHNGKLSVESELGHGTTFTIHF 582 >gi|170701268|ref|ZP_02892235.1| integral membrane sensor hybrid histidine kinase [Burkholderia ambifaria IOP40-10] gi|170133827|gb|EDT02188.1| integral membrane sensor hybrid histidine kinase [Burkholderia ambifaria IOP40-10] Length = 1276 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 133/228 (58%), Gaps = 6/228 (2%) Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 S KSDFLAR+SHEIRTP+ ++G +E+++ R + ++ + + RSG +L I++ Sbjct: 561 SAKSDFLARMSHEIRTPMNGVLGMTELLQRTRL----TSKQRKFVDTVYRSGQTLLVIID 616 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADL 701 D+LD SKIE+GK+ L +L + + + ++L++ A K + + A+++P R+ D Sbjct: 617 DILDFSKIEAGKLTLERIDFNLHQLLDDVVALMEPNARRKELELVYQRADSVPQRMRGDP 676 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 ++QI N+L NAI FT G + +S ++ + ++ ++ D+G+G+ + +PF Sbjct: 677 VRLRQILTNLLGNAIKFTEHG-HVGLSAAYSDDGRIVFKIADSGIGIAPDVAAQLFRPFQ 735 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q +S + GTGLGL +++ + + G + STP KG++ + P Sbjct: 736 QADSSTARKYGGTGLGLVISRQLAEMMGGTLTLDSTPGKGSVFTVTTP 783 >gi|256421296|ref|YP_003121949.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] gi|256036204|gb|ACU59748.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] Length = 1162 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 140/244 (57%), Gaps = 3/244 (1%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + +LS + E+ S +KS+FLA +SHE+RTPL +++ + +++ + L + + ++YA Sbjct: 482 RQQLSLKAEELEQSSRYKSEFLANMSHELRTPLNSVLILARLLEENKDRNLSS-KQVDYA 540 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I +SG+ +L ++ND+LD+SKIE+GK+ + EPVS+ VS+ L ++ A+EK I Sbjct: 541 GIIHKSGSDLLKLINDILDLSKIEAGKVEMQIEPVSVSAMVSDLEQLFRVVADEKSIHFS 600 Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T A +P + D + ++Q+ N+LSNA FTP G I + T ++ V + V D G Sbjct: 601 TEIAAGVPATVQTDRQRLEQVIKNLLSNAFKFTPKNGNIQLRLTAAAD-GVYIAVSDNGT 659 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ + + + F Q S + GTGLGL ++K ++ G+ + S +G+ + Sbjct: 660 GIPVEKQQLIFEAFRQADGSTSRKYGGTGLGLSISKELMKRLGGEIRLESKEGQGSTFTV 719 Query: 807 IFPL 810 + + Sbjct: 720 VLRM 723 >gi|94263977|ref|ZP_01287779.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455649|gb|EAT05831.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 1211 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 86/242 (35%), Positives = 134/242 (55%), Gaps = 11/242 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS+FLA +SHEIRTP+ AIIG ++ +K+Q P PR +Y I S +L ++ND Sbjct: 414 KSEFLANMSHEIRTPMNAIIGLGQLALKSQ---PPPPPRLYDYLEKITGSAATLLTLIND 470 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLR 702 +LD SKIE+GK+ + P L E +++ L+ A EK + + + +PR+L D Sbjct: 471 ILDFSKIEAGKLAIDQVPFDLSEILNQLDHLMAGQAAEKGLELLFAVDPTVPRLLVGDPH 530 Query: 703 SVKQIALNILSNAIHFTPSGGQIIIS--TTHTSNEEVILRV--RDTGVGMTNYELEKAMK 758 + Q+ +N+ +NAI FT +G ++ IS + E + LRV RDTG+GM+ ++E+ + Sbjct: 531 RLGQVLINLTANAIKFTETG-EVTISFEVVDPTAEPLTLRVAVRDTGIGMSPEQIERIFQ 589 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 PF Q + + GTGLGL +A +V G+ + STP G+ L PH Sbjct: 590 PFTQADGATTRKHGGTGLGLSIAGRLVKLLGGEIRVESTPGAGSTFSFTC-LLGRHEPHK 648 Query: 819 CI 820 + Sbjct: 649 AL 650 >gi|37520585|ref|NP_923962.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35211579|dbj|BAC88957.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 1130 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 75/249 (30%), Positives = 143/249 (57%), Gaps = 4/249 (1%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KNQRFGPLGN 620 +E +Q++ ++ + + K++FLA +SHE+RTPL AIIGFS+++ +N+ Sbjct: 608 AELEQQRLQIESQNQELVEADRQKNNFLASMSHELRTPLNAIIGFSQLLLRNKNLQE--Q 665 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P+ + + + ++G + L +VND+LD++KI++GK+ L ++PV+L+ V E + ++ A Sbjct: 666 PQVLLQLDRVYQNGKIQLRLVNDILDLAKIKAGKVELRYQPVALEPFVREVYAALESLAL 725 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 +K + +R + +I + D + ++ I +N+LSNA +T G++ + + + L Sbjct: 726 QKNLSVRIAVDPSIGSVETDPQQLRTILINLLSNAFKYTER-GEVEVRARRPAADRFELE 784 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 VRDTGVG+ + +K F ++ + + GTGLGL + K +V G+ + STP Sbjct: 785 VRDTGVGIDPDQQQKVFDEFSRLEGAATRQASGTGLGLAICKRLVTLMGGEISLVSTPGV 844 Query: 801 GTLIEIIFP 809 G+ + P Sbjct: 845 GSTFTVRLP 853 >gi|311278255|ref|YP_003940486.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1] gi|308747450|gb|ADO47202.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1] Length = 915 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 135/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + NP ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDL----NPTQRDHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L ++ E ++L+ A++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNSLDEVVTLLAHSAHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILRVRDTG 745 N++P ++ D ++Q+ N++ NAI FT SG I++ SN +V +++RDTG Sbjct: 394 IKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNNKVQVEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V G S P +G+ Sbjct: 454 IGIPESDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGS 510 >gi|86138161|ref|ZP_01056736.1| Hybrid sensory histidine kinase [Roseobacter sp. MED193] gi|85825188|gb|EAQ45388.1| Hybrid sensory histidine kinase [Roseobacter sp. MED193] Length = 763 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 87/279 (31%), Positives = 145/279 (51%), Gaps = 18/279 (6%) Query: 545 IKKLPFSSCYSLTMHDIS---------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 ++KLP+ + + S E + + L A + A+ + KSDFLA +SHE Sbjct: 191 VRKLPWYASREFWALNFSVGVLEDTFVERDEREAALERACEDADIANQAKSDFLANMSHE 250 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 IRTP+ +IG +E+I L + I YA I +SG +L I+ND+L+ SKIE+GK+ Sbjct: 251 IRTPMNGVIGMAELIMET---DLDEDQQI-YAETISKSGTALLTIINDILNFSKIEAGKV 306 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSN 714 L+ P +L A+ + ++L+ AN K + I + N+P D+ V+Q+ NI+ N Sbjct: 307 ELNLAPFNLLTAIEDVVTLLSPRANAKGVEIILRYDPNLPEFFEGDVGRVRQVITNIIGN 366 Query: 715 AIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 A+ FT G + + + N E + ++V DTG+G+ LE F Q+ + Sbjct: 367 AVKFTDV-GYVHVDVSGGKNSENYSLTIKVADTGIGIPANRLEAVFSAFEQVDSGATRSF 425 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 EGTGLGL ++ ++ G+ + S +G++ + PL Sbjct: 426 EGTGLGLAISARLLALMGGEVAVASKAGEGSIFTVQLPL 464 >gi|302035935|ref|YP_003796257.1| hypothetical protein NIDE0557 [Candidatus Nitrospira defluvii] gi|300603999|emb|CBK40331.1| protein of unknown function, putative Histidine kinase [Candidatus Nitrospira defluvii] Length = 949 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 132/247 (53%), Gaps = 1/247 (0%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ +L A ++ KS FLA VSHE+RTPLT+I+GF++ + G L N + Sbjct: 561 RERTAELEAANAQLKQMDRLKSKFLAHVSHELRTPLTSIVGFADNMLEGLVGSL-NMKQE 619 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +Y I +G + ++ DLLD+S++E+GK+ L FE V L VS+ + + A K + Sbjct: 620 QYLTRIKANGTRLARMITDLLDLSRVEAGKLVLSFEQVCLPTLVSDVVEQLLPLAITKHL 679 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 I + + AD + QI N+L NAI +TP GGQ+ + + +++ + +RD Sbjct: 680 NIELQSPDPELLVWADQDRLSQILTNLLDNAIKYTPDGGQVAVELSVDTHDMARIVIRDN 739 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G G+ + L K PF ++ ++ + +G GLGL + K +VD + G + S +GT Sbjct: 740 GQGIPSDALPKLFDPFFRVQQEERSQTKGLGLGLAIVKDLVDLHGGSITVRSEVDQGTEF 799 Query: 805 EIIFPLY 811 PL+ Sbjct: 800 TFTLPLH 806 >gi|260777379|ref|ZP_05886273.1| multi-sensor hybrid histidine kinase [Vibrio coralliilyticus ATCC BAA-450] gi|260607045|gb|EEX33319.1| multi-sensor hybrid histidine kinase [Vibrio coralliilyticus ATCC BAA-450] Length = 1103 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 82/265 (30%), Positives = 136/265 (51%), Gaps = 12/265 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+++ K + L H +IA S KS FLA +SHEIRTP+ ++G ++ Sbjct: 414 DVTKEKNAQANLRHESEIALAASEAKSMFLANMSHEIRTPMNGVVGMLSLLSESEL---- 469 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N I S +L I+ND+LD SKIE+G+M+L PV L + + + ++ L A Sbjct: 470 NGEQKSMVTTIKDSALTLLHIINDILDFSKIEAGQMSLESVPVELQKLIERTLDVLCLQA 529 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS----GGQIIISTT---H 731 N K I + ++ ++P+ I++D + Q+ LN++ NA+ FT S G++ +S T H Sbjct: 530 NNKGIELYLTYDASLPKVIMSDSVRLSQVLLNLVGNAVKFTDSTDEMKGKVWVSATLNQH 589 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 V + + D G+GMT ++EK K F Q S GTGLGL + +++++ G Sbjct: 590 DIAPYVEIIIEDNGIGMTEEQIEKLFKAFSQADTSTTRLYGGTGLGLSITRSLLEMMGGD 649 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHP 816 ++ S G+ + P + P Sbjct: 650 IHVDSRFGVGSRFSVELPFIEVEEP 674 >gi|332991785|gb|AEF01840.1| Response regulator receiver:ATP-binding region, ATPase-like protein [Alteromonas sp. SN2] Length = 887 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 84/248 (33%), Positives = 136/248 (54%), Gaps = 11/248 (4%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++L+ +K AE+ ++ KS FLA +SHEIRTP+ IIG E + Q P Y++ A Sbjct: 376 SELTESKIKAERATASKSIFLANMSHEIRTPMNGIIGLIE-LAQQHPVPDIVSGYLDKAA 434 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 Y S +++ ++ND+LD SKIE+GK+ + SL I+++ L A EK +++R Sbjct: 435 Y---SSQILMSVINDILDFSKIEAGKLKIEEVSFSLHSLFDNLIAVIALKAKEKNLVVRF 491 Query: 689 SFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVR 742 + +I P+++ D + QI +NI SNA+ FT GQI I + N++ + + + Sbjct: 492 IVSPSIPPQVIGDPLRIAQIIMNIGSNAVKFTEQ-GQICIRFDGSINDKGNLLSLTMNIE 550 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D+G+GM+ +L + PF Q ++ + GTGLGL + K + D G S KG+ Sbjct: 551 DSGIGMSERQLARIFNPFTQADDATNRKYGGTGLGLTIVKQLTDLMGGSLSATSVEGKGS 610 Query: 803 LIEIIFPL 810 I PL Sbjct: 611 TFTISLPL 618 >gi|254443566|ref|ZP_05057042.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198257874|gb|EDY82182.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 730 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 80/250 (32%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 568 KNKLSHAKK---IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + + AKK +A+ + KS FL+ +SHE+RTPL +I+ ++ + FG L N + Sbjct: 344 RKGIEKAKKLAVVAQSSNKAKSYFLSNISHELRTPLNSIVSLTQALLEGTFGDL-NAKQH 402 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E + S + ++ND+LD+SKIE GKM L F + + +I +++ A+ K + Sbjct: 403 ENLEIVSESSKHLQSLINDILDLSKIELGKMTLKFAQAGIGDIARSSIRMIEQEASLKNV 462 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVILRVRD 743 + I D + ++QI LN+L NA+ FT S + + S NE V+ V D Sbjct: 463 RCILEINTELENIEVDAKRLRQILLNLLVNAVKFTKSNTDVTLQIEENSENESVVFNVID 522 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 G+G+ + K PF Q+ +S EGTGLGL +A V+ + G + STP G+ Sbjct: 523 HGIGIDQNDFSKIFSPFTQLDDSLSRHYEGTGLGLAIASKFVELHGGGLRVASTPDLGST 582 Query: 804 IEIIFPLYDT 813 I P+ T Sbjct: 583 FTISLPIEQT 592 >gi|153874727|ref|ZP_02002839.1| sensory transduction histidine kinase [Beggiatoa sp. PS] gi|152068810|gb|EDN67162.1| sensory transduction histidine kinase [Beggiatoa sp. PS] Length = 250 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 124/234 (52%), Gaps = 9/234 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS F+A +SHE+RTPL AI+G+SE+++ +G ++ I +G +L ++ND+ Sbjct: 3 KSQFIANMSHELRTPLNAILGYSEILQEDA-QEIGEADFVTDLVKIHSAGKHLLGLINDV 61 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+SKIE+GKM ++ E L + E IS +Q +++ ++ FA N+ ++ AD + Sbjct: 62 LDLSKIEAGKMEIYLEHFELQSLLKEVISTIQPLISKRDNILHLEFAENLGKMEADQTKI 121 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEE--------VILRVRDTGVGMTNYELEKA 756 +Q LN+LSNA FT +G T+N E + V DTG+GMT + K Sbjct: 122 RQSLLNLLSNAAKFTNNGIITFFVNRQTANSENSEFKRDWIEFGVSDTGIGMTKTQKNKI 181 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F Q S + GTGLGL + K ++ G + S G+ +I PL Sbjct: 182 FHAFSQADASTTRKYGGTGLGLVITKCFIEMMGGTITVESDYEHGSTFKIRLPL 235 >gi|94265547|ref|ZP_01289294.1| PAS [delta proteobacterium MLMS-1] gi|93453947|gb|EAT04297.1| PAS [delta proteobacterium MLMS-1] Length = 825 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 81/234 (34%), Positives = 127/234 (54%), Gaps = 14/234 (5%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG-NPRYIEYANYIDRSGNLVLDIVND 643 KS+FLA +SHEIRTPL IIG SE++ P +P + YA I SG +L I+ND Sbjct: 302 KSEFLANMSHEIRTPLNGIIGLSELLAA---APENLDPEHRRYAGLIHDSGQALLTIIND 358 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLR 702 +LD SKIE+G + L +L +AV+ + L + + I ++ ++ +P +L D + Sbjct: 359 ILDFSKIEAGHLELAERQFNLHDAVTTTLELAKATTGARDIPLKLEYSPELPGELLGDPQ 418 Query: 703 SVKQIALNILSNAIHFTPSGGQIIIS--------TTHTSNEEVILRVRDTGVGMTNYELE 754 ++Q+ LN+LSNA+ FT SG +I++ T + V+DTG+G+ LE Sbjct: 419 RLRQVLLNLLSNALKFTESG-EIVLRLAAADQAPATSAPALPISFTVKDTGIGIAAERLE 477 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + F Q S GTGLGL + + +V A G + S P +G+ ++I Sbjct: 478 QIFEAFNQADTSSTRHQAGTGLGLAIVRRLVTAMGGTIEVESEPGQGSSFQVII 531 >gi|183222624|ref|YP_001840620.1| putative two-component sensor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912658|ref|YP_001964213.1| signal transduction histidine kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777334|gb|ABZ95635.1| Signal transduction histidine kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167781046|gb|ABZ99344.1| Putative two-component sensor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 536 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 129/226 (57%), Gaps = 5/226 (2%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A+K S K+DFLA +SHEIRTPL AI+G ++ + L N + +EY + SG + Sbjct: 154 AKKASQAKTDFLASMSHEIRTPLNAILGMADTLTETN---LTNEQ-MEYLTVLRNSGKAL 209 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696 +I+ND+LD+S+IESGK+ + S+ + + E ISL + A K I I S +++I + Sbjct: 210 YNIINDILDLSRIESGKLEIEHIEFSIRDLLKETISLFLMKAKSKGIQISYSVSDDIAEQ 269 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 I D ++QI +N++ NA+ FT G + ++ + + L V DTG+G+ N +L Sbjct: 270 IKGDSTRIQQILINLIGNAMKFTEIGKIYVDASLSQDQKSLCLIVEDTGIGIPNEKLNSI 329 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + F Q+ +S R GTGLGL + K ++ G+ + S KG+ Sbjct: 330 FESFTQVDSSTTRRYGGTGLGLTITKKLILMMNGEISVQSQLGKGS 375 >gi|257413676|ref|ZP_04743807.2| putative response regulator receiver domain protein [Roseburia intestinalis L1-82] gi|257202723|gb|EEV01008.1| putative response regulator receiver domain protein [Roseburia intestinalis L1-82] Length = 903 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/269 (28%), Positives = 144/269 (53%), Gaps = 13/269 (4%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKI------AEKESSHKSDFLARVSHEIRTPLTAI 603 F +++ + +I E KQ KN++ H + E K DF+A +SHEIRTPL +I Sbjct: 146 FMQFFAIIILEIMENKQLKNRIQHDMEFNETMRELEDAKQAKDDFMANISHEIRTPLNSI 205 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 IG + + + + + I +G ++ +V+D+LD S++E+ M L EP + Sbjct: 206 IGIGSELLDAKVDDTTKEQLYD----ITVAGRNLMSLVSDILDFSELENDTMELVEEPYN 261 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG 722 + +++ +++ ++ EK + I +IP +L D + + +I LN+++NAI FT +G Sbjct: 262 ITSVINDVVNMAHVWNKEKNLEIIVDCEADIPNNLLGDSQKIYRIILNLINNAIKFTDAG 321 Query: 723 GQIII--STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 G I+ + + ++++V+DTG+GM+ ++ + Q+ ++ R G GLGL + Sbjct: 322 GVILFVGARKESYGINLMVKVKDTGIGMSEKNIDALENTYNQVDTTRDRRAGGIGLGLAI 381 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ M+ G +I S P GT + II P Sbjct: 382 SRKMIAKMNGHMHIESVPDAGTTVSIIIP 410 >gi|153832261|ref|ZP_01984928.1| sensory box sensor histidine kinase/response regulator [Vibrio harveyi HY01] gi|148871572|gb|EDL70427.1| sensory box sensor histidine kinase/response regulator [Vibrio harveyi HY01] Length = 867 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 113/388 (29%), Positives = 184/388 (47%), Gaps = 24/388 (6%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 +++ + +V QL + E D I I + G I N A L Y + + K + L+ Sbjct: 230 SQKALSEKVSQLAQVAEHARDAIIITDPVGKITWVNPAFETLTEYSLAEARDKTLSELLQ 289 Query: 503 Q-NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL----SLRIIIKKLPFSSCYSLT 557 NT +V ++ S+ Q + L TK + L ++ + + + Sbjct: 290 GPNTQNVQLQKFSD--SIQNHQPVRTEVLNYTKSNQPYWGERDLSPVMNEHGQVQRFIVV 347 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KN 612 DISE + + KLS K + + + KS+FLA +SHEIRTP+ AI+GFSE++ +N Sbjct: 348 ERDISERIEIEKKLSDEVKKSARATKAKSEFLANMSHEIRTPMNAIMGFSEILLESEKRN 407 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 ++ L + + +S ++ ++ND+LD SK+E+GK+ L EP L E V + Sbjct: 408 EQRSLL---------HLLHKSAGNLITLINDILDYSKVEAGKLTLIEEPFDLRELVESST 458 Query: 673 SLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQII-ISTT 730 +L AN+K + + +I ++ D + QI LN++ NA+ FT G +I I+ Sbjct: 459 ALCAYQANKKDLKLLVDMPLDIHAHVIGDRGRINQILLNLIGNAVKFTEEGHILIKITEK 518 Query: 731 HTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 T V V DTG+G+ L M F Q+ NS + EGTGLGL ++K +V Sbjct: 519 RTPQGNVYCFDVIDTGIGIPEERLPHIMDKFEQVDNSITRKYEGTGLGLAISKRLVQMYG 578 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 G + ST G+ L + H Sbjct: 579 GDLSVTSTLGSGSCFSFSLKLCQQTPDH 606 >gi|84385138|ref|ZP_00988170.1| two-component system sensory/regulatory protein-like protein (hybrid family) [Vibrio splendidus 12B01] gi|84379735|gb|EAP96586.1| two-component system sensory/regulatory protein-like protein (hybrid family) [Vibrio splendidus 12B01] Length = 1640 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 89/259 (34%), Positives = 144/259 (55%), Gaps = 16/259 (6%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DISE K+ +L K+ A+ S KS+FLA +SHEIRTP+ AIIG S + G + Sbjct: 1031 DISEMKRLNEQLEEEKQRADLASQAKSEFLANMSHEIRTPMNAIIGLSYL----AIGEIS 1086 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM---NLHFEPVSLDEAVSEAISLVQ 676 NP Y + RSG+ +L I+ND+LD SKIE+G++ ++ F+PV+ + I L++ Sbjct: 1087 NPVARNYIEKVHRSGHSLLSIINDILDFSKIEAGQLVIDSIPFDPVT---TFQDVIELME 1143 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SN 734 A+EK++ + S + ++ D + Q+ LN++ NAI FT S G + ++ TH SN Sbjct: 1144 SKADEKQLKLSMSIDPELDTPLIGDPLRLFQVILNLIGNAIKFT-SHGNVTLNVTHLESN 1202 Query: 735 EEVI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + + V DTG+G++ K + F Q ++ + GTGLGL +++ +V A K Sbjct: 1203 DRSVSMKVVVSDTGIGISEENRRKLFQAFSQADSTTTRKFGGTGLGLNISQKLVQAMGSK 1262 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + S KG+ + L Sbjct: 1263 ISVASVLGKGSEFSFVLTL 1281 >gi|83941860|ref|ZP_00954322.1| sensor histidine kinase/response regulator [Sulfitobacter sp. EE-36] gi|83847680|gb|EAP85555.1| sensor histidine kinase/response regulator [Sulfitobacter sp. EE-36] Length = 713 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 84/272 (30%), Positives = 143/272 (52%), Gaps = 24/272 (8%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI------KN 612 DI+E + + KL A+ AE +S KS FLA++SHEIRTP+ I+G +EV+ ++ Sbjct: 190 RDITETVEYQRKLVDARATAEAANSAKSLFLAKMSHEIRTPMNGIVGMTEVLGDTALTQD 249 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 QR Y + I SG +L I+ND+LD S+IE+ ++++H P L+ E + Sbjct: 250 QRL----------YVDTIKTSGEALLVIINDVLDFSRIEANRLSIHPAPFDLERVFQEVL 299 Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST-- 729 L+Q A +K + + + +PR ++ D ++Q+ N++ NA+ FT +G +I +T Sbjct: 300 LLLQPLAVQKGLDLALDYDLFLPRKLVGDAGRIRQVLTNLVGNAVKFTQNGHILIRATGL 359 Query: 730 --THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + N + + + DTG+G+ +E M F Q + EGTGLGL + + +V Sbjct: 360 PDAGSGNVLIKILIEDTGIGIAPDMIEHIMGEFTQASSDPSPNAEGTGLGLAICQRLVQL 419 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLY---DTSHP 816 G+ ++ S G+ PL D++ P Sbjct: 420 MGGEIWVTSEHGIGSCFGFELPLKAQEDSAAP 451 >gi|162420651|ref|YP_001608241.1| two-component sensor/regulator [Yersinia pestis Angola] gi|165926708|ref|ZP_02222540.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pestis biovar Orientalis str. F1991016] gi|167402481|ref|ZP_02307936.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418881|ref|ZP_02310634.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|162353466|gb|ABX87414.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pestis Angola] gi|165921331|gb|EDR38555.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pestis biovar Orientalis str. F1991016] gi|166962875|gb|EDR58896.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048131|gb|EDR59539.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 891 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 128/253 (50%), Gaps = 11/253 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ L+ AK+ AE+ + KSD L +SHEIRTPL +G E+++N G R Sbjct: 330 KERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDA-GQMRLA 388 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E A+ S +L I+N+LLD S+IESG+M L E +L + +A+ + A K + Sbjct: 389 ETAHQCSLS---LLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSL 445 Query: 685 LIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + T + NIP L D ++QI +N+L NA+ FTP G I N+ + V D Sbjct: 446 ALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGR--IQLRVRRQNQTLCFTVED 503 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG G+ + +PF Q + +Q GTGLGL +A + G +FS P +G+ Sbjct: 504 TGCGIDVQHQQTIFQPFMQTSDHEQ----GTGLGLAIADNLAKMMGGHLTVFSEPGQGSC 559 Query: 804 IEIIFPLYDTSHP 816 + P + P Sbjct: 560 FSLCLPFNAITPP 572 >gi|312885457|ref|ZP_07745096.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311302037|gb|EFQ79067.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1157 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 145/249 (58%), Gaps = 7/249 (2%) Query: 567 EKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 E+ + S ++K+ E E++ +KS+FLA +SHE+RTPL +I+ + ++K+ + L + I Sbjct: 469 EEARRSISQKMRELETTGKYKSEFLANMSHELRTPLNSILVLARILKDNKAQTLTEDQ-I 527 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +Y+ I +GN +L ++ND+LD+SKIESGK+ + E V + E + + SL A K I Sbjct: 528 KYSTVIFNAGNDLLTLINDILDLSKIESGKLEILNEKVKVSEILKDVESLFAEVAKNKNI 587 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVILRVR 742 T NN+P IL D+ +Q+ N+LSNA FT G + +I+ + + + L ++ Sbjct: 588 TFTTQQNNNVPEYILTDMVRSQQVIKNLLSNAFKFTSENGSVSVIANLDETGKNLALSIK 647 Query: 743 DTGVGMTNYELEKAM-KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G+G+ Y+ +K + + F Q S + GTGLGL +++ + G + S P +G Sbjct: 648 DSGIGIP-YDKQKLIFEAFQQADGSTSRKYGGTGLGLSISRELTHLLGGAIKLKSKPGEG 706 Query: 802 TLIEIIFPL 810 + ++ PL Sbjct: 707 SEFTLLLPL 715 >gi|309790646|ref|ZP_07685199.1| histidine kinase [Oscillochloris trichoides DG6] gi|308227312|gb|EFO80987.1| histidine kinase [Oscillochloris trichoides DG6] Length = 717 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 80/244 (32%), Positives = 140/244 (57%), Gaps = 18/244 (7%) Query: 579 EKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA-NYIDRSGNL 636 E+E+ K++F++ VSHE+RTPLT+I+G++E+++ + F P ++I N +R L Sbjct: 475 EREADRLKNEFVSIVSHELRTPLTSILGYTELLRTREFAPEERQQFITTVFNEAERLSQL 534 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 V DLL +S+IE+GK+ L+ +SL V E + + + R+LI IP Sbjct: 535 V----EDLLGMSRIEAGKVKLNRWVISLTNIVYELTTQLNTSLIKHRLLI--DITGEIPP 588 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----------HTSNEEVILRVRDTGV 746 I AD VKQI N+L+NAI ++P+GG+I ++ H + +++ VRD G+ Sbjct: 589 IYADRDKVKQIIFNLLTNAIKYSPNGGEIQLTIREAQKRDLPGDHPLGQWIVVSVRDEGI 648 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 GM +L + + F ++ N+ + GTGLGL +++A+V+ + G+ ++ ST +G+ Sbjct: 649 GMAPEDLPRIWERFYRVDNTNTRKIGGTGLGLSISRALVELHGGRIWVTSTLGRGSRFFF 708 Query: 807 IFPL 810 P+ Sbjct: 709 TLPV 712 >gi|166365913|ref|YP_001658186.1| two-component hybrid sensor and regulator [Microcystis aeruginosa NIES-843] gi|166088286|dbj|BAG02994.1| two-component hybrid sensor and regulator [Microcystis aeruginosa NIES-843] Length = 795 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 91/299 (30%), Positives = 153/299 (51%), Gaps = 14/299 (4%) Query: 523 QTLEKITLGSTKEEKLLSLRI-------IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 Q LE +T G K +LLS+ + +I+K S + L DI+E +Q +L+ Sbjct: 224 QRLETVTSGLAKTWRLLSVPLNWADNYPLIEKT--SGLWLLLATDITEQQQYCQELAVKN 281 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 + K +FLA VSHE ++PLTA+IG S +++ Q+ G L NPR +YA+ I RSG Sbjct: 282 ADLVHLNRLKDEFLACVSHEFKSPLTAVIGLSNLLREQKIGEL-NPRQSKYADLIYRSGR 340 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL---IRTSFAN 692 ++ +VNDLLD++++E+G++ L F V +D ++ ++ L R + Sbjct: 341 QLMALVNDLLDLTRLETGQLKLTFTRVKIDRLCQRVYDIIVDKYPQRLDLPGSYRLDIES 400 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 + LAD ++Q+ +N+L NA+ FT GG I N + V DTG+G+ Sbjct: 401 GLDYALADEARLQQMLVNLLDNAVKFTIDGGNFGIKVNRWEN-WLAFTVWDTGIGIPEES 459 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + F Q+ + + EG GLGL L++ + + G S +G+ ++ P++ Sbjct: 460 QHLIFQKFQQLESPFTRQFEGAGLGLLLSQKLARCHGGDLSFVSKDREGSQFTLLLPVH 518 >gi|120612634|ref|YP_972312.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] gi|120591098|gb|ABM34538.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] Length = 1159 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 75/245 (30%), Positives = 137/245 (55%), Gaps = 3/245 (1%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 ++ LS + E+ S +KS+FLA +SHE+RTPL + + ++++ + + G L + YA Sbjct: 457 QDALSDKARDLEQASQYKSEFLANMSHELRTPLNSSLILAKLLADNKGGNL-TEEQVRYA 515 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I +GN +L+++ND+LD++KIE+G+ + EPV++ AV + ++ A EK + Sbjct: 516 ETIHGAGNDLLNLINDILDLAKIEAGQATVEIEPVNVARAVQSIVEPLRPLAREKNLAFS 575 Query: 688 TSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 +P +L D + + QI N+LSNAI FT G++ + + V VRDTG+ Sbjct: 576 AVVEPGVPDVLRTDAQRLGQILKNLLSNAIKFTER-GEVALRVAAQPDGRVAFSVRDTGI 634 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ ++ + + F Q S + GTGLGL +++ + G + ST +G++ + Sbjct: 635 GIPEHQQKLIFEAFRQADGSTHRKYGGTGLGLSISRDLAQLLGGSVSVQSTSGQGSVFTL 694 Query: 807 IFPLY 811 + P++ Sbjct: 695 VLPVH 699 >gi|213648276|ref|ZP_03378329.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 855 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 135/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + NP ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTEL----NPTQRDHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTG 745 N++P ++ D ++Q+ N++ NAI FT SG I++ SN +V + ++RDTG Sbjct: 394 IKNDVPENVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|144898726|emb|CAM75590.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Magnetospirillum gryphiswaldense MSR-1] Length = 710 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 146/254 (57%), Gaps = 3/254 (1%) Query: 558 MHD-ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 +HD + +++++ L AK A++ + KS+FL+ +SHE+RTPL A+IGF+++++ +R G Sbjct: 307 LHDALISLERQQHDLEQAKLGADRANQAKSEFLSSMSHELRTPLNAVIGFTQLLRTERPG 366 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL N + ++I R G +L+++N++LD+++IE+GK++L E + ++E ++ + Sbjct: 367 PL-NEKQAGQLDHILRGGQHLLELINEVLDLARIETGKLSLSVEVIDPVVVMNECLAFGR 425 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 YA E+ + I + I D KQI LN++SNAI + + G++ ++ Sbjct: 426 AYARERGVEIGEWQGGPVLPISVDYTRFKQILLNLISNAIKYNRADGRVTLTAQPWGTGM 485 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + DTG G+ + +PF ++ ++ EGTG+GL + K +V A G S Sbjct: 486 MRFSIADTGPGIARDKQAHLFEPFNRL-GAESRDVEGTGIGLTITKRLVQAMNGLIGFHS 544 Query: 797 TPAKGTLIEIIFPL 810 +G++ I FP+ Sbjct: 545 QEGQGSVFWIDFPI 558 >gi|296132739|ref|YP_003639986.1| multi-sensor signal transduction histidine kinase [Thermincola sp. JR] gi|296031317|gb|ADG82085.1| multi-sensor signal transduction histidine kinase [Thermincola potens JR] Length = 598 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 97/363 (26%), Positives = 178/363 (49%), Gaps = 34/363 (9%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S++ + +G+ +R G ++ N KL + + I R N + + E Sbjct: 265 SLIMSLGEGVIATDRTGTVVRVNTMARKLMQFAEDPIGR---------NIKECCSGGVAE 315 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIK----KLPFSSCYSLTMHDISEWKQEKNKL 571 I+ L + + K + +L+L IK + + C + DISE Sbjct: 316 IIQKVLEEGIGKSATLKKENITVLALASPIKDSRENISGTVC---VLQDISE-------- 364 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYI 630 AEK + DF++ VSHE+RTPLTAI G++E + + G + +P + Y N I Sbjct: 365 ------AEKLEQMRKDFVSDVSHELRTPLTAIRGYNEALSD---GTVEDPEIRQKYHNII 415 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + +++DLLD+S+++SGK++L EP+ + + + ++ N K I + Sbjct: 416 REETQRLERLIHDLLDLSRLQSGKISLELEPLDVGAVIRSTVEKLEPQINIKGIAVELDI 475 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 NIP I+ + + Q+ + +L NA+ +T +GG+I +S + V + + DTG G+ Sbjct: 476 PQNIPYIMGNEDRLVQLLIILLDNAVRYTDAGGKIFVSVGDVGLKGVEIAITDTGKGIPK 535 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 ++ + F ++ S+ G GTGLGL +A+ +V+ + G + S +GT +I+FPL Sbjct: 536 EDIPFIWERFYKVDKSRTRTGAGTGLGLAIARQIVELHHGTIEVESELGRGTTFKIVFPL 595 Query: 811 YDT 813 ++ Sbjct: 596 AES 598 >gi|22124428|ref|NP_667851.1| two-component sensor/regulator [Yersinia pestis KIM 10] gi|45440264|ref|NP_991803.1| two-component sensor/regulator [Yersinia pestis biovar Microtus str. 91001] gi|21957214|gb|AAM84102.1|AE013653_2 putative response regulator [Yersinia pestis KIM 10] gi|45435120|gb|AAS60680.1| two-component sensor/regulator [Yersinia pestis biovar Microtus str. 91001] Length = 929 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 128/253 (50%), Gaps = 11/253 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ L+ AK+ AE+ + KSD L +SHEIRTPL +G E+++N G R Sbjct: 368 KERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDA-GQMRLA 426 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E A+ S +L I+N+LLD S+IESG+M L E +L + +A+ + A K + Sbjct: 427 ETAHQCSLS---LLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSL 483 Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + T + NIP L D ++QI +N+L NA+ FTP G I N+ + V D Sbjct: 484 ALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGR--IQLRVRRQNQTLCFTVED 541 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG G+ + +PF Q + +Q GTGLGL +A + G +FS P +G+ Sbjct: 542 TGCGIDVQHQQTIFQPFMQTSDHEQ----GTGLGLAIADNLAKMMGGHLTVFSEPGQGSC 597 Query: 804 IEIIFPLYDTSHP 816 + P + P Sbjct: 598 FSLCLPFNAITPP 610 >gi|117925745|ref|YP_866362.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609501|gb|ABK44956.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1128 Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 135/249 (54%), Gaps = 8/249 (3%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DI + L A+ AE+ S K +FLA +SHEIRTP+ AI+G + + Sbjct: 372 LTDIRAEQAAAKALRDARDAAEQASQAKGEFLANMSHEIRTPMNAILGMTHLCLQTDL-- 429 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 N R + + +G+ +L I+ND+LD SKIE+G + + + +DE ++ L+ + Sbjct: 430 --NERQRHFLEKVYAAGSALLRILNDILDFSKIEAGSLEIEKTSLKMDEVLASLADLMSI 487 Query: 678 YANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNE 735 A+EK+I + N+P IL D + Q+ +N++ NA+ FT G ++ I ++ Sbjct: 488 RADEKKIELLFHRDANLPEILVGDPLRLGQVLINLVGNALKFTEQGEVVVRIEVIQSAER 547 Query: 736 EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +V +R V+DTG+G+TN ++ + F Q +S R GTGLGL ++ +V G Sbjct: 548 QVKVRFSVKDTGIGLTNEQMSNIFQSFKQADSSTTRRYGGTGLGLAISHRLVQLMGGVLK 607 Query: 794 IFSTPAKGT 802 + STP +G+ Sbjct: 608 VESTPGQGS 616 >gi|302670202|ref|YP_003830162.1| two component system histidine kinase/response regulator hybrid protein [Butyrivibrio proteoclasticus B316] gi|302394675|gb|ADL33580.1| two component system histidine kinase/response regulator hybrid protein [Butyrivibrio proteoclasticus B316] Length = 1015 Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 78/218 (35%), Positives = 131/218 (60%), Gaps = 9/218 (4%) Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 +A + S KS FL+ +SHEIRTP+ A++G +E+I + +P+ +EYAN + +GN Sbjct: 387 VAREASEAKSAFLSNMSHEIRTPINAVLGLNEMIVRES----EDPQILEYANSVKSAGNS 442 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP- 695 +L IVND+LD SKIE+GKM++ L +++ ++L+ + A +K + ++ + +P Sbjct: 443 LLGIVNDILDFSKIEAGKMDILPVEYHLSSTINDLVNLIAVKAEDKHLELKFNIDKTLPT 502 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYE 752 +++ D +KQ NIL+NA+ +T G + IS + + LR V DTG+G+ + Sbjct: 503 QLIGDEIRIKQCVTNILTNAVKYTEKGSVSLNISYRKDGEDSIYLRFQVIDTGIGIKEED 562 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 LEK PF +I ++ EGTGLG+ + K ++ A MG Sbjct: 563 LEKLYSPFERIEETRNRSIEGTGLGMSIVKNLL-ALMG 599 >gi|325920495|ref|ZP_08182421.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865] gi|325549022|gb|EGD19950.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865] Length = 1364 Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 103/379 (27%), Positives = 180/379 (47%), Gaps = 29/379 (7%) Query: 464 GIAII--NREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLD 520 G AII + G + N A KL GY E+++ R+ + F+E L + Sbjct: 503 GYAIIATDSSGFVTLFNPAAEKLLGYKAEEVIGRRKASQFIEPEELQERARMLADQTGTP 562 Query: 521 LRQTLEKI----TLGSTKEEK-------------LLSLRIIIKKLPFSSCYSLTMHDISE 563 + QTLE + +LG + + LL+L + Y D++E Sbjct: 563 VAQTLEAVAALTSLGRSDTSEWTYVSHEGRHLPVLLTLSTLRDDNDQVIGYLGVAVDLTE 622 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K + +L A A+ + KSDFLA +SHEIRTP+ AI+G +++ P+ Sbjct: 623 QKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSEL-PVAA--- 678 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 ++ IDRS +L+I+ND+LD SKIE+G+++L P L++ L++ + K Sbjct: 679 LDMVAKIDRSARSLLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSLSAKP 738 Query: 684 I-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVI 738 + +I + +L D + Q+ +N++ NAI FT G ++ S + +++ Sbjct: 739 VEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKLKLL 798 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 VRDTG+G++ + PF Q S R G+GLGL +++ +++ G+ + S P Sbjct: 799 FSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEVESVP 858 Query: 799 AKGTLIEIIFPLYDTSHPH 817 +G+ + L ++ P Sbjct: 859 GRGSEFYFVVTLEKSAPPQ 877 >gi|154249956|ref|YP_001410781.1| multi-sensor hybrid histidine kinase [Fervidobacterium nodosum Rt17-B1] gi|154153892|gb|ABS61124.1| multi-sensor hybrid histidine kinase [Fervidobacterium nodosum Rt17-B1] Length = 969 Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 133/243 (54%), Gaps = 9/243 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ + +L AK+ AEK + KS FLA +SHEIRTPL IIGF+ ++K + + + Sbjct: 443 KKYEEELIKAKQEAEKANQAKSIFLANMSHEIRTPLNGIIGFTNLLKETKL----DEKQE 498 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +Y + I +S L+L+I+ND+LD++KIESGK L +L + ++ L + A EK + Sbjct: 499 KYVSIILKSSELLLEIINDILDLAKIESGKYQLEPLETNLKMELQSSLLLYEAKAKEKNV 558 Query: 685 LIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VIL 739 I L D ++Q+ N+++NAI FTP+GG + + S +E + Sbjct: 559 EYEIRIDKEISDCLILDSVRLQQVMFNLINNAIKFTPAGGSVKVFVKKISEDEEHENIRF 618 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ +LEK +PF Q S + GTGLGL ++ +V K + S Sbjct: 619 SVIDTGIGIPKEKLEKIFEPFEQASVSVTKKYGGTGLGLAISNLIVSMMGSKIIVESEEE 678 Query: 800 KGT 802 KG+ Sbjct: 679 KGS 681 >gi|254457575|ref|ZP_05071003.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium GD 1] gi|207086367|gb|EDZ63651.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium GD 1] Length = 736 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 127/233 (54%), Gaps = 6/233 (2%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L KK AE + KS+FLA +SHEIRTP+ I+G + + N + Y I Sbjct: 274 LEIEKKKAEDATKIKSEFLANMSHEIRTPMNGILGMTHLALETDL----NDKQRNYIQKI 329 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 D S +L ++ND+LD SKIE+GK+++ ++ E + I +V+L A+EK + + ++ Sbjct: 330 DNSAKSLLGVINDILDFSKIEAGKLSIEKADFNMSEVIENVIHVVELKADEKNLKLTVNY 389 Query: 691 ANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 NI + D ++QI +N+L NA+ FT S G++ IS S + V DTG+G++ Sbjct: 390 DKNISKYFYGDSLRLRQILINLLGNAVKFTDS-GEVSISLKKISKDRFRFEVSDTGIGLS 448 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + K K F Q S + GTGLGL ++K +V+ GK ++ S G+ Sbjct: 449 QEKQSKLFKSFSQADGSITRKYGGTGLGLSISKQLVELLGGKIWVESKENIGS 501 >gi|329114863|ref|ZP_08243619.1| Histidine protein kinase DivJ [Acetobacter pomorum DM001] gi|326695760|gb|EGE47445.1| Histidine protein kinase DivJ [Acetobacter pomorum DM001] Length = 946 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 88/262 (33%), Positives = 145/262 (55%), Gaps = 12/262 (4%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L M +I K+ +L AK+ AE + KS F+ VSHEIRTPL +I+G++ +++N+ Sbjct: 648 LLMREIHAHKRTDQELKKAKERAESANLSKSRFMVGVSHEIRTPLNSIMGYAYLLENKML 707 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P + E I RS + ++ L DISKIE+G+M + E ++ E + ++ Sbjct: 708 TP---EKQNEGLKVIQRSTEHLSGLIEGLFDISKIEAGRMEILREKINFREFLKHLTEML 764 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 + N+K++L +++P ++ D R ++QI +N+LSNAI FTPSG +S + N Sbjct: 765 RFQVNQKKLLFIEHIPDDLPEYVMTDQRRLRQILINLLSNAIKFTPSGS---VSFSVRWN 821 Query: 735 EEV-ILRVRDTGVGMTNYELEKAMKPFGQI--PNSQQIRGEGTGLGLPLAKAMVDANMGK 791 E+ I ++DTG+G+ ++E+ +PF + P SQ I +GTGLGL + + +V G+ Sbjct: 822 MEIAIFEIQDTGIGIPATDIERIHEPFQRSSHPASQSI--QGTGLGLTITRLLVQILGGE 879 Query: 792 FYIFSTPAKGTLIEIIFPLYDT 813 I S GT + L T Sbjct: 880 LTIKSQVGLGTTCRVRLMLAQT 901 >gi|212638358|ref|YP_002314878.1| signal transduction histidine kinase [Anoxybacillus flavithermus WK1] gi|212559838|gb|ACJ32893.1| Signal transduction histidine kinase [Anoxybacillus flavithermus WK1] Length = 587 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 100/366 (27%), Positives = 186/366 (50%), Gaps = 23/366 (6%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQ 503 R E++ +L +++E G+ +I++ G I NRA ++F P + + R + F Sbjct: 235 RTQEMQQDRLRALIENIGSGLILIDQRGYISLMNRAYKEMFRIDPSDYVHRLYYEAF--- 291 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 P E+++L +E+I + K + L + I++ F + + E Sbjct: 292 --PY------KEVIAL-----VEEIFMTEVNVRKQMLLPVDIERKHFEVYGTPIIGTNDE 338 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 WK ++ + E K DF+A VSHE++TP+T+I GF+E + + G + + + Sbjct: 339 WKGIIVVFHDITELKKLEQMRK-DFVANVSHELKTPITSIKGFAETLLD---GAMHDAQT 394 Query: 624 IEY-ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +EY I + + ++ DLLD+SKIE L+ V L E + E I +++ AN+K Sbjct: 395 LEYFLTIILKESERLQHLIQDLLDLSKIEQQGFTLNISVVDLHEVLKEVIVMLEAKANDK 454 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 +I + + + + DL +KQI +N+++NAI +TP+GG++ + +E+ + V Sbjct: 455 QITLEYTSNAPVCYMYGDLHRLKQIFINLINNAIAYTPAGGRVTVY-VEKDEKELHVHVS 513 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ E+ + + F ++ ++ GTGLGL + K +V+A+ G + S GT Sbjct: 514 DTGIGIEQKEIPRIFERFYRVDKARSRNSGGTGLGLAIVKHLVEAHHGTISVKSEVGIGT 573 Query: 803 LIEIIF 808 + F Sbjct: 574 TFTVHF 579 >gi|225026715|ref|ZP_03715907.1| hypothetical protein EUBHAL_00967 [Eubacterium hallii DSM 3353] gi|224955976|gb|EEG37185.1| hypothetical protein EUBHAL_00967 [Eubacterium hallii DSM 3353] Length = 983 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 122/394 (30%), Positives = 196/394 (49%), Gaps = 38/394 (9%) Query: 441 RINKRKMEIEVM---QLCSILEATSDGIAII----NREGIILSTNRAVSKLFGYPVEDIL 493 RIN RK + E++ +L L D + ++ + +S N KL G VE I Sbjct: 320 RINLRKKDTEILYRDELFQKLSMNVDDVFLMLDAKTYQADYVSPN--AEKLLGITVEQI- 376 Query: 494 RKPFTVFL----EQNTPSVMNHYLTEILSLDLRQ-TLEKITLGSTKEEKLLSLRIIIKKL 548 RK + E+ S N Y+ EI + R+ E + L T E++ ++ ++ Sbjct: 377 RKDICILGKLHPEEQEDSEKN-YMEEIQVHEQREWDFEYVHL-KTGEKRWFHNIVMGSEV 434 Query: 549 PFSSCYSLTMHD-ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 Y L M D S+WK + LS A AE + KS FL+ +SH+IRTP+ AIIGF+ Sbjct: 435 NGKRKYILVMSDRTSDWKMNQ-ALSEAVHAAETANQAKSTFLSNMSHDIRTPMNAIIGFT 493 Query: 608 EV----IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 + I NQ R +Y I S N +L ++ND+LD+S+IESGK++L VS Sbjct: 494 TLAVSNIDNQ-------ERVQDYLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVS 546 Query: 664 LDEAVSEAISLV--QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 L + + + +++ Q++A + + + N + D + Q+ LN+LSNA+ FTP+ Sbjct: 547 LSDVLHDLKTIISGQIHAKQLELYMDVMDVTN-EDVYCDKTRLNQVLLNLLSNAVKFTPA 605 Query: 722 GGQIIISTTH-----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 GG + + ++ +RV+DTG+GM+ ++K PF + S R +GTGL Sbjct: 606 GGTVSVRLKQYPKAVKGSKLYEIRVKDTGIGMSQEFVQKIFSPFERERTSTVSRTQGTGL 665 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 G+ + K +VD G + + KGT + PL Sbjct: 666 GMAITKNIVDMMGGTIEVQTEQGKGTEFIVCLPL 699 >gi|167644961|ref|YP_001682624.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167347391|gb|ABZ70126.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 832 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 78/259 (30%), Positives = 140/259 (54%), Gaps = 4/259 (1%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DI+E K + +L A+ AE ++ K +FLA +SHE+RTPLT+++GF+ ++ N+ P Sbjct: 433 VRDITEHKAMERQLREARNEAEAAAAVKGEFLANMSHELRTPLTSVLGFARLVDNE---P 489 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 +P + + + G +L +ND+LD SK+E+G++ L EP + + + EA+ L L Sbjct: 490 DLSPDARRFISRVLSGGKALLTTINDILDFSKLEAGQLELKLEPTAPAQLIDEAMDLFSL 549 Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 + + +R ++P +L D ++Q+ LN++ NA+ FT G + + + E Sbjct: 550 ETEARGVALRAVGLEDLPADLLIDGGRLRQVLLNLIGNAVKFTEVGTITVSAAYEPAGER 609 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + L V DTG G+ +++ + F Q+ + GTGLGL + K +V+A G+ + S Sbjct: 610 LSLSVADTGPGIAPGDVDLLFRRFSQVDAGLTRKHGGTGLGLAICKGLVEAMGGQIGVTS 669 Query: 797 TPAKGTLIEIIFPLYDTSH 815 P +G T+H Sbjct: 670 VPGQGACFSFDVVAPSTAH 688 >gi|52548497|gb|AAU82346.1| signal transduction histidine kinase [uncultured archaeon GZfos17A3] Length = 424 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 132/231 (57%), Gaps = 3/231 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ + K+DFL+ SHE+RTPLT + ++++ G L + + + + R+ + Sbjct: 183 EEVTRMKTDFLSITSHELRTPLTPMKSQLQMLQEGYMGKL-DKKQEKSIEVVLRNLTRLE 241 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++ D+LDIS+IE+G++ L F ++L++AV EAI + + +A K I IR A +P I+ Sbjct: 242 NLIGDILDISRIEAGRIKLSFNSMNLNDAVKEAIKMQEAFAKGKNIEIRAKLAE-MPNII 300 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 D ++Q N+L+NAI F+ G++II T + V + D G+G++ + +K K Sbjct: 301 GDAERLRQAIGNLLNNAIKFSEKTGKVIIETKRLG-KNVRFSITDYGIGISKTDQKKLFK 359 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 PF QI +S GTGLGL + K ++ A+ GK + S KG+ + P Sbjct: 360 PFTQIDSSMGREHVGTGLGLAITKGIIQAHNGKIWAESELGKGSTFYFVIP 410 >gi|108810018|ref|YP_653934.1| two-component sensor/regulator [Yersinia pestis Antiqua] gi|108813573|ref|YP_649340.1| two-component sensor/regulator [Yersinia pestis Nepal516] gi|145600962|ref|YP_001165038.1| two-component sensor/regulator [Yersinia pestis Pestoides F] gi|150260697|ref|ZP_01917425.1| two-component sensor/regulator [Yersinia pestis CA88-4125] gi|165936543|ref|ZP_02225111.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pestis biovar Orientalis str. IP275] gi|166010515|ref|ZP_02231413.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pestis biovar Antiqua str. E1979001] gi|166213929|ref|ZP_02239964.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pestis biovar Antiqua str. B42003004] gi|167426128|ref|ZP_02317881.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469426|ref|ZP_02334130.1| two-component sensor/regulator [Yersinia pestis FV-1] gi|218927461|ref|YP_002345336.1| two-component sensor/regulator [Yersinia pestis CO92] gi|229836507|ref|ZP_04456673.1| two-component sensor/regulator [Yersinia pestis Pestoides A] gi|229840116|ref|ZP_04460275.1| two-component sensor/regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842197|ref|ZP_04462352.1| two-component sensor/regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229904062|ref|ZP_04519175.1| two-component sensor/regulator [Yersinia pestis Nepal516] gi|270488949|ref|ZP_06206023.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Yersinia pestis KIM D27] gi|294502331|ref|YP_003566393.1| two-component sensor/regulator [Yersinia pestis Z176003] gi|108777221|gb|ABG19740.1| two-component sensor/regulator [Yersinia pestis Nepal516] gi|108781931|gb|ABG15989.1| two-component sensor/regulator [Yersinia pestis Antiqua] gi|115346072|emb|CAL18940.1| two-component sensor/regulator [Yersinia pestis CO92] gi|145212658|gb|ABP42065.1| two-component sensor/regulator [Yersinia pestis Pestoides F] gi|149290105|gb|EDM40182.1| two-component sensor/regulator [Yersinia pestis CA88-4125] gi|165915659|gb|EDR34268.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pestis biovar Orientalis str. IP275] gi|165990605|gb|EDR42906.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pestis biovar Antiqua str. E1979001] gi|166204904|gb|EDR49384.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pestis biovar Antiqua str. B42003004] gi|167054839|gb|EDR64641.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229679832|gb|EEO75935.1| two-component sensor/regulator [Yersinia pestis Nepal516] gi|229690507|gb|EEO82561.1| two-component sensor/regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229696482|gb|EEO86529.1| two-component sensor/regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706191|gb|EEO92199.1| two-component sensor/regulator [Yersinia pestis Pestoides A] gi|262360411|gb|ACY57132.1| two-component sensor/regulator [Yersinia pestis D106004] gi|262364361|gb|ACY60918.1| two-component sensor/regulator [Yersinia pestis D182038] gi|270337453|gb|EFA48230.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Yersinia pestis KIM D27] gi|294352790|gb|ADE63131.1| two-component sensor/regulator [Yersinia pestis Z176003] gi|320013880|gb|ADV97451.1| two-component sensor/regulator [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 939 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 128/253 (50%), Gaps = 11/253 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ L+ AK+ AE+ + KSD L +SHEIRTPL +G E+++N G R Sbjct: 378 KERTLALAEAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDA-GQMRLA 436 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E A+ S +L I+N+LLD S+IESG+M L E +L + +A+ + A K + Sbjct: 437 ETAHQCSLS---LLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSL 493 Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + T + NIP L D ++QI +N+L NA+ FTP G I N+ + V D Sbjct: 494 ALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGR--IQLRVRRQNQTLCFTVED 551 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG G+ + +PF Q + +Q GTGLGL +A + G +FS P +G+ Sbjct: 552 TGCGIDVQHQQTIFQPFMQTSDHEQ----GTGLGLAIADNLAKMMGGHLTVFSEPGQGSC 607 Query: 804 IEIIFPLYDTSHP 816 + P + P Sbjct: 608 FSLCLPFNAITPP 620 >gi|239909089|ref|YP_002955831.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798956|dbj|BAH77945.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 975 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 81/264 (30%), Positives = 139/264 (52%), Gaps = 14/264 (5%) Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 C + DIS K + L AK+ AE + KS FL+ +SHEIRTP+ I+G +V++ Sbjct: 548 CLLSVLVDISGRKTMEEALRLAKESAEAANKAKSRFLSTMSHEIRTPMNTILGMVDVLRG 607 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVS 669 + R E+ ++ +G ++ ++ D+L++SKIESG + L ++P+ L Sbjct: 608 TEL----SGRQQEFLRTLEVAGESLMALLTDILELSKIESGVLELAEAAYDPLEL---AG 660 Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QI 725 + ++L+ A K + +R + PR + D ++QI +N++ NAI FT +G ++ Sbjct: 661 QVVALLSPQAQAKGLTLRLEAGKDAPRQAVGDPDRIRQILINLVGNAIKFTAAGEVALKL 720 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + S EE++ V DTG+G+ + E KPF Q+ +S GTGLGL + +V Sbjct: 721 SLLPARLSREELLFAVSDTGIGIPPEKREAIFKPFTQVDSSTTRAYGGTGLGLAICALLV 780 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 D G+ ++ S P G++ P Sbjct: 781 DGMNGRLWLESEPGAGSVFYCALP 804 >gi|117923740|ref|YP_864357.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607496|gb|ABK42951.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 893 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 88/258 (34%), Positives = 134/258 (51%), Gaps = 15/258 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS K + +L + AE S KSDFLA +SHEIRTPL AIIG EV+ L Sbjct: 353 DISAQKDLERRLRTTTERAESASRAKSDFLAVISHEIRTPLNAIIGMGEVL-------LD 405 Query: 620 NPRYIE---YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 +P E YA ++ + +LD++ND+LD+SKIE+G+ L P L + + + Sbjct: 406 DPLTTEQKHYAMVSQQAAHTLLDLINDVLDLSKIEAGEFQLEHAPYDLVGLIHSVVEVNT 465 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN- 734 + AN++ + I + + +P ++ DLR V+Q+ N+L NAI FT G I + T Sbjct: 466 ITANQQGLPIECNLPDTLPTLMHGDLRRVRQVLFNLLGNAIKFTEQ-GLIRVETERLETP 524 Query: 735 --EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + + V+DTG+G+ + F Q S R G+GLGL ++K +V+ GK Sbjct: 525 VASWIRISVKDTGIGIAQEKQSLIFDAFTQSDGSITRRYGGSGLGLTISKRLVEMMGGKI 584 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S KG+ P+ Sbjct: 585 GVDSQLGKGSHFFFTLPV 602 >gi|16761737|ref|NP_457354.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143221|ref|NP_806563.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213163046|ref|ZP_03348756.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|25308233|pir||AI0860 sensor protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504038|emb|CAD06072.1| sensor protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29138854|gb|AAO70423.1| sensor protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 918 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 134/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + NP ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTEL----NPTQRDHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 N++P ++ D ++Q+ N++ NAI FT SG I++ SN +V + V RDTG Sbjct: 394 IKNDVPENVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|317499092|ref|ZP_07957371.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316893612|gb|EFV15815.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 985 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 108/348 (31%), Positives = 176/348 (50%), Gaps = 17/348 (4%) Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNH---YLTEILSLDLRQTLEKITLGSTKEEK 537 V KL G +E I R+ + E ++ + + YL EI + ++ + T E + Sbjct: 368 VEKLLGITIEQI-REDICILGELHSEDMKDSKKDYLKEIQVHEQQEWDFECVHQKTGERR 426 Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + ++ + Y L M D + K+ LS A AE + KS FL+ +SH+IR Sbjct: 427 WFHSVAMGSEVNGNKKYILVMSDRTADKKMNQALSDAVYAAENANQAKSTFLSNMSHDIR 486 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 TP+ AIIGF+ + + N + + +Y I S N +L ++ND+LD+S+IESGK++ Sbjct: 487 TPMNAIIGFTTL----AVSNIDNKKMVRDYLGKILSSSNHLLSLINDILDMSRIESGKIH 542 Query: 657 LHFEPVSLDEAVSEAISLV--QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714 L VSL + + + +++ Q++A + + + N + D + QI LN+LSN Sbjct: 543 LEETEVSLSDVLHDLKTIISGQIHAKQLELYMDAMDVTN-EDVYCDKTRLNQILLNLLSN 601 Query: 715 AIHFTPSGGQIIISTTH---TSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 AI FTP+GG I + T E + +RV+D G+GM+ ++K PF + +S Sbjct: 602 AIKFTPAGGMISVRLKQYPGTQRERQLYEIRVKDNGIGMSEDFVQKLFSPFERERSSTVS 661 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 R +GTGLG+ + K +VD G I + KGT + PL S H Sbjct: 662 RTQGTGLGMAITKNIVDMMGGNIEIQTEQGKGTEFIVRLPLRIQSKHH 709 >gi|83815506|ref|YP_446611.1| sensor/response regulator hybrid protein, putative [Salinibacter ruber DSM 13855] gi|83756900|gb|ABC45013.1| probable sensor/response regulator hybrid protein, putative [Salinibacter ruber DSM 13855] Length = 624 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 90/265 (33%), Positives = 134/265 (50%), Gaps = 8/265 (3%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI---KNQR 614 + D++E ++ K L A++ E+ KS LA ++HEIRTPLTAIIGF+E I ++ Sbjct: 341 LEDVTEQERRKQALRRAEEEIEEADRLKSALLANMNHEIRTPLTAIIGFAEAIGTTASEM 400 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P P YA+ I++SG +LD D+LD+S++E+G+M L E V L E A+ Sbjct: 401 DLPEHTP-LTGYADLIEQSGKRLLDTFEDILDLSQLEAGQMELGIETVDLAEQARRAVQE 459 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A +K I +R + R A+ V+ N+L NAI +T GG + + T Sbjct: 460 CGANAQDKEIDVRLEATSVSAR--ANENGVQVALQNLLDNAIKYTADGGTVWVRTRPEPG 517 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V L V D G GM +++ +PF Q EG G+GL + K + G + Sbjct: 518 RAV-LEVEDDGAGMEPETVDQLFEPFRQASTGMAREYEGAGVGLAVTKEATEQMGGAIEV 576 Query: 795 FSTPAKGTLIEIIFPLYDTSHPHDC 819 + P G+ I FP+ D S HDC Sbjct: 577 ETEPGAGSRFLIRFPMADHST-HDC 600 >gi|330989290|gb|EGH87393.1| PAS protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 998 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 111/373 (29%), Positives = 181/373 (48%), Gaps = 39/373 (10%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT---------- 505 +++E T I + +REG++ N + ++F EDI+ K T + N Sbjct: 567 ALVEGTPHPIYVRDREGMLRMCNDSYLRVFSAQREDIIGKSATEGVLGNAFEAREYAADY 626 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH------ 559 VM IL LR ++T I LPF Sbjct: 627 QRVMASNTALILDRPLRIGDRQMT-------------IYHWILPFRDSLGEVQGIIGGWI 673 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DISE +Q L AK+ A+ S KS FLA +SHEIRTP+ A+IG E+ +K G L Sbjct: 674 DISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHGEL 733 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + IE A S N +LD++ D+LDI++IESG+++L+ E +L V + + Sbjct: 734 -DRSAIEVAY---SSANDLLDLIGDILDIARIESGRLSLNPERANLRRLVESVLRVFDGL 789 Query: 679 ANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE 736 A +K + + + I +L D KQI N++SNAI FTP G +I++ + + + Sbjct: 790 ARQKDLDLVLELDSRINADVLIDPLRFKQILSNLVSNAIKFTPMGRIKIVLQAAESPDPQ 849 Query: 737 VI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ + V+D+G+G++ + ++ +PF Q N+ Q+ G GLGL + +++ G Sbjct: 850 LLHLHITVQDSGIGISAEDQQRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMMGGNLS 909 Query: 794 IFSTPAKGTLIEI 806 + S P +GT I + Sbjct: 910 LDSVPGQGTRISM 922 >gi|294506248|ref|YP_003570306.1| Two component system histidine kinase, [Salinibacter ruber M8] gi|294342576|emb|CBH23354.1| Two component system histidine kinase, putative [Salinibacter ruber M8] Length = 1198 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 85/242 (35%), Positives = 130/242 (53%), Gaps = 7/242 (2%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG---PLGNPRYIEYA 627 L AK+ AE+ S KS LA +SHEIRTPLT+IIGF+EV+ + P G+P + A Sbjct: 946 LRDAKEEAEEASRMKSALLANMSHEIRTPLTSIIGFAEVVGTEASTLDLPTGSP-LPDCA 1004 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + I+R G +LD + +L++SK+E+G+M L EPV L V +Q A EK I +R Sbjct: 1005 DRIERGGKRLLDTLEGVLNLSKLEAGQMELDAEPVPLISEVQRVAEELQPKAREKEIDLR 1064 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 + AD V+ IA N+LSNAI +T + G + + ++ ++ +L V DTG+G Sbjct: 1065 LETESAWAE--ADEGGVQIIARNLLSNAIKYTEADGTVWVR-SYRADGRAVLEVEDTGIG 1121 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 M ++ +PF Q EGTG+GL + K + G + + +G+ + Sbjct: 1122 MAPEAVDDLFEPFRQASEGFSREYEGTGVGLAVTKRAAEEMDGSVDVDTEEGEGSRFTVR 1181 Query: 808 FP 809 P Sbjct: 1182 LP 1183 >gi|158333298|ref|YP_001514470.1| two-component hybrid histidine kinase sensor and regulator [Acaryochloris marina MBIC11017] gi|158303539|gb|ABW25156.1| two-component hybrid histidine kinase sensor and regulator [Acaryochloris marina MBIC11017] Length = 1575 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 89/270 (32%), Positives = 146/270 (54%), Gaps = 28/270 (10%) Query: 565 KQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 KQ+ +KLS AK+ AE + KS+FLA +SHE+RTPL I+G+++++ QR Sbjct: 1071 KQQSHKLSEQNHELLVAKREAEFANQAKSEFLANMSHELRTPLNGILGYAQIL--QRSAS 1128 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 L +P+ + + + G +L ++ DLLD+SKIE+ +M LH + E ++ L + Sbjct: 1129 L-SPKDHKGIQVMHQCGQHLLTLIEDLLDLSKIEAQRMELHPDSFHFHEFLTGISELCTI 1187 Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIIS----- 728 A +K + + T FA+N+P+ I AD + ++QI LNIL NA+ FT SG ++ I+ Sbjct: 1188 KAQQKGLELITQFASNLPQGIYADEQRLRQILLNILGNAVKFTDSGNVTFKVAIAPDPLP 1247 Query: 729 -------TTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 H + ++ +V DTG+G+ EL K PF Q + + +GTGLGL + Sbjct: 1248 PISQKDDLPHGETIQSIVFQVSDTGIGIVAQELSKIFLPFEQAGHPDRYH-QGTGLGLAI 1306 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + GK + S P +G++ L Sbjct: 1307 SHNLTAMMGGKLSVISQPNEGSVFSFTLAL 1336 >gi|241764934|ref|ZP_04762934.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax delafieldii 2AN] gi|241365496|gb|EER60261.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax delafieldii 2AN] Length = 1425 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 106/383 (27%), Positives = 183/383 (47%), Gaps = 23/383 (6%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-- 501 +++++ ++ +LE I + + EG LS N+A G P +L + FL Sbjct: 468 QQRLQEQLAFTSQVLECNPLPICMTDPEGRFLSVNQAWEDFMGVPRASVLGLRNSDFLAP 527 Query: 502 -EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 E T N L S + + GS ++ ++ + + + M D Sbjct: 528 QEARTYDASNDQLLREGSRVRYEERVRRPDGSFRDVQVTKVPVFTNNRQPVGILIVKM-D 586 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E+ A+ +AE+ S KS+F+A +SHE+RTPL +I+GFSE G L Sbjct: 587 ITEFLA-------ARDLAEEASRSKSEFVANISHELRTPLQSILGFSE------LGMLRG 633 Query: 621 PRYIEYANY---IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 ++ + A I +G +L +VNDLLDI+KIES HFE + + + + + + ++L Sbjct: 634 RQHEKLAAMFSDIHAAGQRMLVLVNDLLDIAKIESTVGAFHFERIDVRDLIDDVAAEMEL 693 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 KR+ +R + D +Q+ N+L+NA+ F+P G I IS + ++ + Sbjct: 694 LLGRKRLDLRLALGRAPLIAKVDPSRFQQVVRNVLANAVKFSPKGSAIDISASTPDDDFI 753 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 ++V D G G+ ELE + F Q ++ G GTGLGL + + ++ A+ G+ + Sbjct: 754 HIQVCDQGPGIPPSELEAVFEAFVQSSQTRDGSG-GTGLGLAICRKIITAHGGRINATNV 812 Query: 798 PAKGTLIEIIFPL--YDTSHPHD 818 P G + I+ P Y + P D Sbjct: 813 PGGGAMFHIVLPTAGYTDTMPAD 835 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 85/281 (30%), Positives = 145/281 (51%), Gaps = 8/281 (2%) Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 T +L L +++ L + ++ + IS L+ ++ A++ + KS+FLA + Sbjct: 1139 TTRNTVLMLTVLLS-LAVVAFVAVFLGSISRLALSHAALTQSEAEAQRANQAKSEFLAAM 1197 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD-IVNDLLDISKIE 651 SHE+RTPLT+I GF+E+++ + PL I+ + + R G L+ ++ ++LD+++IE Sbjct: 1198 SHELRTPLTSIRGFAELMELRSKDPL-----IQEQSALIRQGAEHLNALLTEILDLARIE 1252 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALN 710 +G M H EPV L + V E L ++ A K + + + ++ P+ L D +KQI N Sbjct: 1253 AGAMPAHPEPVVLHDLVHEVSELFRVSAVAKSLALTAAVSDAAPQTLVTDRLKLKQILSN 1312 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 +LSNAI FTP+G I +V V DTG G+ + F Q + Sbjct: 1313 LLSNAIKFTPAGRVEIFVDACPDGSQVHFHVNDTGPGIPASLHGVIFEKFSQGHARISYQ 1372 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 GTGLGL L++A+ + G + S +G+ + PL+ Sbjct: 1373 HGGTGLGLSLSRALAELLGGTLTVRSAVGEGSTFTLSLPLH 1413 >gi|218887072|ref|YP_002436393.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758026|gb|ACL08925.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1058 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 104/370 (28%), Positives = 175/370 (47%), Gaps = 18/370 (4%) Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 ++L ++E+ D I + + G IL N G+ E +LR E+ V Sbjct: 479 LRLRMLVESAGDAIYLADGAGHILDANPEAEHQTGHTREQLLRMTLFDIDERLDQRVFAR 538 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS------CYSLTMHDISEWK 565 E+ S + T E T T+ L + + + ++ + + D S K Sbjct: 539 LRAELESAR-KATFE--TTHRTRNGTPLPVEVRMAQVEETGEAEGDPLLLAIVRDSSARK 595 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + +++L AK++AE S K +FLA +SHEIRTPL I+G ++++ P R + Sbjct: 596 RAESELRCAKEVAEAASRTKGEFLANMSHEIRTPLNGIMGMLQLLQTD---PPKAMRTV- 651 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y +S + ++ D+LD+S+IE+GK+ LH EP + E L + A E+ + Sbjct: 652 YVGAATQSCRRLGLLLGDILDLSRIEAGKLELHDEPFEARAVLDEVRGLFEGPAAERGLT 711 Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII----ISTTHTSNEEVILR 740 +R S IPR L D ++Q+ N++ NA+ FT G ++ + + + V+ Sbjct: 712 LRVSVDERIPRHLRGDAMRLRQVLFNLVGNAVKFTDQGEVVVEAWRVQASRSRGCRVVFT 771 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 VRDTG+G+ L+ +PF Q + R +G GLGLP+ + +V G + STP Sbjct: 772 VRDTGIGIAEERLKDIFEPFVQAETASTRRYQGAGLGLPIVRRLVRLMCGTVTVESTPGA 831 Query: 801 GTLIEIIFPL 810 GT + P Sbjct: 832 GTAFSVSLPF 841 >gi|197118247|ref|YP_002138674.1| HAMP/PAS domain-containing phosphate sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197087607|gb|ACH38878.1| phosphate sensor histidine kinase, HAMP and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 460 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 99/358 (27%), Positives = 178/358 (49%), Gaps = 48/358 (13%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE-------DILRKPFT 498 ++E E +L +IL +GI + + +G I N A LFG E DI R P Sbjct: 103 RLEAEKNRLDAILRGMGEGIMVADPQGCITLVNPAFKGLFGLHDEVEGRLLIDISRHP-- 160 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT- 557 ++ +ILS ++ +E++ L S KE LL + +P C +T Sbjct: 161 ---------ALHESFRDILS-SRQERVEELQLHSPKERSLL-----VHWVPLVECGVVTG 205 Query: 558 ----MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 HDIS+ +Q + + DF+A VSHE+RTP+T I G++E + Sbjct: 206 VVAVFHDISDLRQMEKM--------------RRDFVANVSHELRTPITIIKGYAETLLA- 250 Query: 614 RFGPLGNP-RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 G L +P + ++ + + + + +V+DLL +S++ESG + L V + E + Sbjct: 251 --GALEHPTQATKFVSIVHSHADRLASLVSDLLTLSQLESGAVPLEARSVKVQEIAERVV 308 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 L++ E+ I++ + + P ++AD ++Q+ +N+L NA+ +TP+GG + +S Sbjct: 309 VLLERKIRERGIIVDLAGLKDAPSVMADPGRLEQVIVNLLDNAVKYTPAGGSVTLSAAD- 367 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 E V + V+DTG+G+ + +L + + F ++ +++ GTGLGL + K +V G Sbjct: 368 REESVTIAVQDTGIGIPSKDLSRIFERFYRVDSARSRDEGGTGLGLSIVKHIVQLQGG 425 >gi|158339430|ref|YP_001520607.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158309671|gb|ABW31288.1| two-component hybrid sensor and regulator, putative [Acaryochloris marina MBIC11017] Length = 1660 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 94/288 (32%), Positives = 155/288 (53%), Gaps = 30/288 (10%) Query: 547 KLPFSSCYSL--TMHDISEWKQEKN-------KLSHAKKIAEKE-----------SSHKS 586 K PF + + T DIS+ KQ + +L H + KE + KS Sbjct: 1146 KDPFDNTVGILGTYEDISDRKQAEQALKQVNEELEHRVVLRTKELQAAKEAADAANRAKS 1205 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 DFLA +SHE+RTPL I+G+++V+K P + + N I +SG +L +++D+LD Sbjct: 1206 DFLANMSHELRTPLNGILGYAQVLKRDHHLL---PCHQQALNTIHQSGEHLLTLIDDILD 1262 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705 I+KIE+ K+ L+ + + ++L Q+ A EK I A+++P+ I +D + ++ Sbjct: 1263 IAKIEARKLELNISDIHFPSLLESIVNLFQMRAQEKNIQFVYRPADSLPQGIQSDKKCLR 1322 Query: 706 QIALNILSNAIHFTPSGGQIIIST---THTSNE-EVILRVRDTGVGMTNYELEKAMKPFG 761 QI LN+LSNAI FT GQ+ +S HTS + ++ + DTG+G++ ++E+ PF Sbjct: 1323 QILLNLLSNAIKFTDQ-GQVTLSVEIEQHTSQQIKLKFTITDTGIGISPDQIEQIFHPFE 1381 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q+ + + R EGTGLGL +++ +V+ G S KG+ P Sbjct: 1382 QVGDLNR-RAEGTGLGLSISRQLVELMGGTLQAESCEEKGSTFWFSIP 1428 >gi|294507653|ref|YP_003571711.1| two-component sensor histidine kinase [Salinibacter ruber M8] gi|294343981|emb|CBH24759.1| two-component sensor histidine kinase [Salinibacter ruber M8] Length = 936 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 88/256 (34%), Positives = 132/256 (51%), Gaps = 7/256 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI+E KQ + L AK+ AE+ S KS LA +SHEIRTPLT+IIGF+E N Sbjct: 679 TIQDITERKQRERALREAKQEAEEASQLKSSLLANMSHEIRTPLTSIIGFAEAT-NAEAK 737 Query: 617 PLGNPR---YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 L P +YA I++SG +L+ + +L++SK+E+G+M L PV L E Sbjct: 738 ELDLPDDSPLPKYAELIEQSGRRLLETLEGVLNLSKLEAGEMELEARPVDLVEEAEAVAE 797 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK + ++ AD V+ +A N+LSNA+ +T +GG++ + T+ Sbjct: 798 ELRPRAEEKEVSLQ--LETEAAWAEADKGGVQILARNLLSNAVKYTEAGGRVRLR-TYRE 854 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 V V DTG+GM E +PF Q +GTG+GL + K G Sbjct: 855 EGAVAFEVEDTGIGMDPETAEGLFEPFRQASEGFSREYQGTGIGLAVTKETTKQMEGSID 914 Query: 794 IFSTPAKGTLIEIIFP 809 + + +GT I + P Sbjct: 915 VETEKGEGTRITVWLP 930 >gi|200387412|ref|ZP_03214024.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604510|gb|EDZ03055.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 918 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 134/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + NP ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTEL----NPTQRDHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 N++P ++ D ++Q+ N++ NAI FT SG I++ SN +V + V RDTG Sbjct: 394 IKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|22298825|ref|NP_682072.1| two-component hybrid sensor and regulator [Thermosynechococcus elongatus BP-1] gi|22295006|dbj|BAC08834.1| two-component hybrid sensor and regulator [Thermosynechococcus elongatus BP-1] Length = 1353 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 82/237 (34%), Positives = 134/237 (56%), Gaps = 9/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+ AE + KS+FLA +SHEIRTP+ A++GF+ ++ + PL N + ++ Sbjct: 809 ELEQARLQAELANRAKSEFLATMSHEIRTPMNAVLGFTNLLLDT---PL-NEQQRDFLQT 864 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRT 688 + ++G +L I+ND+LD SKIESGK+ L +P + E V + +SL+ A EK + L+ T Sbjct: 865 LHQAGEALLTIINDILDFSKIESGKLVLEQQPFDVRECVEDVLSLLASKAQEKELELLYT 924 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 +I D+ ++QI +N++ N I FT GQ+ + E + +V+DTG Sbjct: 925 CTPETPAQIKGDVTRLRQILVNLVGNGIKFT-HEGQVAVHVGVLKREGKDFLQFQVQDTG 983 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ L++ KPF Q+ S GTGLGL ++K + + G + ST +GT Sbjct: 984 IGIPRDRLDRLFKPFSQVDASTTREYGGTGLGLVISKRLCELMGGDMSVESTEGQGT 1040 >gi|284054265|ref|ZP_06384475.1| two-component hybrid sensor and regulator [Arthrospira platensis str. Paraca] Length = 823 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 107/405 (26%), Positives = 200/405 (49%), Gaps = 42/405 (10%) Query: 438 VDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 ++ R+ +E++ + L SI++ +DG+ + + EG I TN A++ LF DI K Sbjct: 204 LEERVKMATVELQETLANLTSIIDHIADGLLVTDAEGKITRTNPALANLFALGDLDIRGK 263 Query: 496 PFTVFLEQNTPSVMNHYL-TEILSLDLRQ---TLEKITLGSTKEEKLLSLRIIIKKL--P 549 + E + V+N L ++ LD Q LE +G + +L K++ P Sbjct: 264 LCS---EAFSGDVLNLLLQSKAQPLDAFQGEVKLEGDRIGQAVAKGVL------KQVSSP 314 Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE-SSHKSDFLARVSHEIRTPLTAIIGFSE 608 S + + + ++ AEKE K+DF++ VSHE+RTPLT+++GF++ Sbjct: 315 SGSEELIYIGSVVLFRD---------ITAEKEIDRMKTDFISTVSHELRTPLTSVLGFAK 365 Query: 609 VIKNQR------FGPLGNPRYIEYANYIDRSGNLVL-------DIVNDLLDISKIESGKM 655 +I+ + F + + N + + ++++ +++ND+LDI+K+E+GK Sbjct: 366 LIQKKLDDVILPFIKTDDTKINRAVNQVASNVDIIVSEGIRLTNLINDVLDIAKMEAGKT 425 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 H EP+S+ V AIS N K I + + +N+P I+ D + Q+ +N++SNA Sbjct: 426 EWHIEPLSIKTVVERAISATTSLFNNKPIKLIVNMPDNLPDIMGDNDKLMQVFINLISNA 485 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 + FT +G + + + V+DTG G+ + E+ + F Q+ N+ + +GTG Sbjct: 486 VKFTETGN--VTLKLMAVKSAIKVSVKDTGCGIDAADREQVFEKFKQVGNTLTNKPQGTG 543 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 LGLP+ + ++ + G ++ S G+ PL D + + Sbjct: 544 LGLPICQEIIQHHGGSIWVESQVGVGSTFYFTLPLPDDQDIQNAV 588 >gi|322417554|ref|YP_004196777.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320123941|gb|ADW11501.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 510 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 105/393 (26%), Positives = 191/393 (48%), Gaps = 47/393 (11%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +R+++ E +++ ++L+ +D + ++ EG I++T+R + D+ + L+ Sbjct: 130 QRQLDEERLKMEAVLQGMADLLLAVDLEGRIITTSRQAESVLSSE-GDLRGRTLEEVLKA 188 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL-TMHDIS 562 P T + + + R + + L + +LS +K S+ + DIS Sbjct: 189 EVPGGELPARTVLRTGEARLDVAYLLLIGGHQVPVLSSAAPLKNAEGELVGSVEIIRDIS 248 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL-GNP 621 + K+ + K DF++ +SH++++P+TA++G ++++ + GP+ G+ Sbjct: 249 KLKELEQ--------------EKEDFVSMLSHDLKSPITAVVGSIDLVREAKLGPVTGDQ 294 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF---EPVSLDEAVSEAISLVQLY 678 R EY N S ++++++ LL I K E+GKM L+F +P +L V+ +++ Q Sbjct: 295 R--EYLNAAIESCEEMVEMIDTLLGIHKFEAGKMKLYFKDEDPAAL---VNRSVTKFQTM 349 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST--------- 729 A I + T+ + +P I AD S +I N+LSNA+ FTP GG+I +S Sbjct: 350 ARRGGIRLFTTLPSELPAISADRSSFNRIMGNLLSNAVKFTPEGGEIEVSADLVQEPSAV 409 Query: 730 THTSNEE-------------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 T EE V +RVRD+GVG+ L F Q N +Q + GTGL Sbjct: 410 TGAVPEENYAPQQLPREGEFVRIRVRDSGVGIPQESLGSIFDRFVQARNRRQGKTRGTGL 469 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GL + VDA+ G + S P G++ ++ P Sbjct: 470 GLAFCRKAVDAHNGFIWAESEPGAGSVFTLLLP 502 >gi|94263691|ref|ZP_01287499.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455890|gb|EAT06049.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 1211 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 86/242 (35%), Positives = 134/242 (55%), Gaps = 11/242 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS+FLA +SHEIRTP+ AIIG ++ +K+Q P PR +Y I S +L ++ND Sbjct: 414 KSEFLANMSHEIRTPMNAIIGLGQLALKSQ---PPPPPRLYDYLEKITGSAATLLTLIND 470 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702 +LD SKIE+GK+ + P L E +++ L+ A EK + + + + PR ++ D Sbjct: 471 ILDFSKIEAGKLAIDQVPFDLSEILNQLDHLMAGQAAEKGLELLFAVDSGAPRQLVGDPH 530 Query: 703 SVKQIALNILSNAIHFTPSGGQIIIS--TTHTSNEEVILRV--RDTGVGMTNYELEKAMK 758 + Q+ +N+ SNAI FT G ++ IS + + +ILRV RDTG+GM+ ++E+ + Sbjct: 531 RLGQVLINLTSNAIKFTQQG-EVTISFEVADPTADPLILRVAVRDTGIGMSPEQIERIFQ 589 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 PF Q + + GTGLGL +A +V G+ + STP G+ L PH Sbjct: 590 PFTQADGATTRKHGGTGLGLSIAGRLVKLLGGEIRVESTPGAGSTFSFTC-LLGRHEPHK 648 Query: 819 CI 820 + Sbjct: 649 AL 650 >gi|281418385|ref|ZP_06249405.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum JW20] gi|281409787|gb|EFB40045.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum JW20] Length = 932 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 83/257 (32%), Positives = 141/257 (54%), Gaps = 8/257 (3%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 F+ Y +++ K+ + + A+ A+K + KS+FLA +SHEIRTP+ +IIG+ + Sbjct: 304 FNELYRSFHNELVRRKKAEETMKAARDEADKANRAKSEFLASMSHEIRTPINSIIGYQYL 363 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 +KN + +P+ EY I + +L I+N +LD SKIE+G+M L ++D+ ++ Sbjct: 364 LKN----SVLSPKQREYVENIGLAAKNLLAIINQILDFSKIEAGRMVLEEVDFNIDDVLN 419 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 E + +V + A K I +R ++PR L D+ +KQ+ +N++SN I FT G I Sbjct: 420 ELMIIVGMEAKRKGIELRIKVDEDVPRFLKGDITRLKQVVMNLVSNGIKFTHEGYISIRV 479 Query: 729 TTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 NEE + V DTG+G+++ + + + F Q S + GTGLGL + K +V Sbjct: 480 ELVEKNEENACIKFSVTDTGIGISDEQKKLLFQVFTQGDASTSRKYGGTGLGLAICKRLV 539 Query: 786 DANMGKFYIFSTPAKGT 802 + G+ + S KG+ Sbjct: 540 ELMKGEINVESEVGKGS 556 >gi|254249290|ref|ZP_04942610.1| Hypothetical protein BCPG_04150 [Burkholderia cenocepacia PC184] gi|124875791|gb|EAY65781.1| Hypothetical protein BCPG_04150 [Burkholderia cenocepacia PC184] Length = 1044 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 84/258 (32%), Positives = 139/258 (53%), Gaps = 14/258 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ K + KL A + A+ + KS FLA +SHEIRTPL AI+G E+I + PL Sbjct: 533 DITSQKNIERKLDEALRAADAANDAKSAFLATMSHEIRTPLNAILGNLELIGRE---PLA 589 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + E ++ + +++L++++D+LD+SKIE+G+M + P L EA+ + ++ + A Sbjct: 590 DTQR-ERLQTVEGASSVLLNLISDILDLSKIEAGQMTIEAIPFDLAEAIEQTGAMFEPLA 648 Query: 680 NEKR----ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHT 732 K +++ + A+ R + D ++QIA N++ NAI FT G ++ + Sbjct: 649 TAKGLQYDVIVDDALAS---RYVGDPVRIRQIAANLVGNAIKFTDRGDVTLEVYLRDDAD 705 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 V++ V DTG+GMT+ + +PF Q S R GTGLGL L K + G Sbjct: 706 PASPVVIGVSDTGIGMTDAQRAALFRPFTQADTSITRRYGGTGLGLALTKHLTQMMDGAI 765 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S P +G+ + PL Sbjct: 766 DVKSAPGEGSTFVVTLPL 783 >gi|17230367|ref|NP_486915.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17131969|dbj|BAB74574.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1817 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/239 (33%), Positives = 131/239 (54%), Gaps = 12/239 (5%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK+ AE + KS+FLA +SHEIRTP+ A+IG + ++ + + ++ + Sbjct: 1126 LEQAKRAAEAANRAKSEFLAMMSHEIRTPMNAVIGMTGLLLDTEL----TSQQRDFVETV 1181 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG+ +L I+ND+LD SKIESGK+ L +P + V + I L+ A +K I + Sbjct: 1182 LTSGDALLSIINDILDFSKIESGKLELEEQPFEVRTCVEQVIDLLAAKAAQKDIELAYLI 1241 Query: 691 ANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNE------EVILRVR 742 +P +I DL ++QI N+L+NAI FTP G ++ + + + N+ E+I ++ Sbjct: 1242 HPQVPMQIAGDLTRLRQILTNLLNNAIKFTPEGEVVVSVRSQPSPNQKNKNCCEIIFTIK 1301 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ ++ +PF Q S + GTGLGL ++K + + G ++ S G Sbjct: 1302 DTGIGIAPETMDLLFQPFVQADASMTRKYGGTGLGLVISKRLGEMMGGYLWVESRGCVG 1360 >gi|291567853|dbj|BAI90125.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 1082 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 107/405 (26%), Positives = 200/405 (49%), Gaps = 42/405 (10%) Query: 438 VDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 ++ R+ +E++ + L SI++ +DG+ + + EG I TN A++ LF DI K Sbjct: 463 LEERVKMATVELQETLANLTSIIDHIADGLLVTDAEGKITRTNPALANLFALGDLDIRGK 522 Query: 496 PFTVFLEQNTPSVMNHYL-TEILSLDLRQ---TLEKITLGSTKEEKLLSLRIIIKKL--P 549 + E + V+N L ++ LD Q LE +G + +L K++ P Sbjct: 523 LCS---EAFSGDVLNLLLQSKAQPLDAFQGEVKLEGDRIGQAVAKGVL------KQVSSP 573 Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE-SSHKSDFLARVSHEIRTPLTAIIGFSE 608 S + + + ++ AEKE K+DF++ VSHE+RTPLT+++GF++ Sbjct: 574 SGSEELIYIGSVVLFRD---------ITAEKEIDRMKTDFISTVSHELRTPLTSVLGFAK 624 Query: 609 VIKNQR------FGPLGNPRYIEYANYIDRSGNLVL-------DIVNDLLDISKIESGKM 655 +I+ + F + + N + + ++++ +++ND+LDI+K+E+GK Sbjct: 625 LIQKKLDDVILPFIKTDDTKINRAVNQVASNVDIIVSEGIRLTNLINDVLDIAKMEAGKT 684 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 H EP+S+ V AIS N K I + + +N+P I+ D + Q+ +N++SNA Sbjct: 685 EWHIEPLSIKTVVERAISATTSLFNNKPIKLIVNMPDNLPDIMGDNDKLMQVFINLISNA 744 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 + FT +G + + + V+DTG G+ + E+ + F Q+ N+ + +GTG Sbjct: 745 VKFTETGN--VTLKLMAVKSAIKVSVKDTGCGIDAADREQVFEKFKQVGNTLTNKPQGTG 802 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 LGLP+ + ++ + G ++ S G+ PL D + + Sbjct: 803 LGLPICQEIIQHHGGSIWVESQVGVGSTFYFTLPLPDDQDIQNAV 847 >gi|207858224|ref|YP_002244875.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206710027|emb|CAR34382.1| sensor protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 918 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 134/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + NP ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTEL----NPTQRDHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 N++P ++ D ++Q+ N++ NAI FT SG I++ SN +V + V RDTG Sbjct: 394 IKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|197249783|ref|YP_002147868.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197213486|gb|ACH50883.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 918 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 134/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + NP ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTEL----NPTQRDHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 N++P ++ D ++Q+ N++ NAI FT SG I++ SN +V + V RDTG Sbjct: 394 IKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|170736601|ref|YP_001777861.1| Hpt sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3] gi|169818789|gb|ACA93371.1| Hpt sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3] Length = 1002 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 84/258 (32%), Positives = 139/258 (53%), Gaps = 14/258 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ K + KL A + A+ + KS FLA +SHEIRTPL AI+G E+I + PL Sbjct: 491 DITSQKNIERKLDEALRAADAANDAKSAFLATMSHEIRTPLNAILGNLELIGRE---PLA 547 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + E ++ + +++L++++D+LD+SKIE+G+M + P L EA+ + ++ + A Sbjct: 548 DTQR-ERLQTVEGASSVLLNLISDILDLSKIEAGQMTIEAIPFDLAEAIEQTGAMFEPLA 606 Query: 680 NEKR----ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHT 732 K +++ + A+ R + D ++QIA N++ NAI FT G ++ + Sbjct: 607 TAKGLQYDVIVDDALAS---RYVGDPVRIRQIAANLVGNAIKFTDRGDVTLEVYLRDDAD 663 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 V++ V DTG+GMT+ + +PF Q S R GTGLGL L K + G Sbjct: 664 PASPVVIGVSDTGIGMTDAQRAALFRPFTQADTSITRRYGGTGLGLALTKHLTQMMDGAI 723 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S P +G+ + PL Sbjct: 724 DVKSAPGEGSTFVVTLPL 741 >gi|16766264|ref|NP_461879.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161615886|ref|YP_001589851.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167550176|ref|ZP_02343933.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993450|ref|ZP_02574544.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231049|ref|ZP_02656107.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168261898|ref|ZP_02683871.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463891|ref|ZP_02697808.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820322|ref|ZP_02832322.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444640|ref|YP_002042209.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194471010|ref|ZP_03076994.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|204928346|ref|ZP_03219546.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|224584749|ref|YP_002638547.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238909738|ref|ZP_04653575.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|6996656|gb|AAF34823.1|AF171069_1 BarA sensor kinase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16421509|gb|AAL21838.1| sensory histidine kinase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161365250|gb|ABX69018.1| hypothetical protein SPAB_03679 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403303|gb|ACF63525.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194457374|gb|EDX46213.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195633256|gb|EDX51670.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|204322668|gb|EDZ07865.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205324815|gb|EDZ12654.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328470|gb|EDZ15234.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334634|gb|EDZ21398.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205342849|gb|EDZ29613.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349206|gb|EDZ35837.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224469276|gb|ACN47106.1| sensor protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248094|emb|CBG25929.1| sensor protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995094|gb|ACY89979.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159519|emb|CBW19038.1| sensor protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913980|dbj|BAJ37954.1| hybrid two-component sensor kinase BarA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087383|emb|CBY97148.1| sensor-regulator, activates OmpR by phophorylation [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225638|gb|EFX50692.1| BarA sensory histidine kinase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131315|gb|ADX18745.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989829|gb|AEF08812.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 918 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 134/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + NP ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTEL----NPTQRDHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 N++P ++ D ++Q+ N++ NAI FT SG I++ SN +V + V RDTG Sbjct: 394 IKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|86355698|ref|YP_467590.1| two-component sensor histidine kinase protein [Rhizobium etli CFN 42] gi|86279800|gb|ABC88863.1| probable two-component sensor histidine kinase protein [Rhizobium etli CFN 42] Length = 860 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 109/396 (27%), Positives = 193/396 (48%), Gaps = 27/396 (6%) Query: 430 QNGIEPEDVDTRINKR-KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 +N E D++TR N K++ E ++ S+G+A+ +G I +N A L+G Sbjct: 477 ENLTEQVDLETRYNTLVKVQGET------IDHLSEGVAVFGPDGRIRLSNPAFRALWG-- 528 Query: 489 VEDILRKPFT---VFLEQNTPSV-----MNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 + + KP T E PS + I S D + + TL E Sbjct: 529 ITETEAKPGTHIRALGEACAPSYDRPDGWKTFAELITSFDDERRSSQGTL-----ELFSG 583 Query: 541 LRIIIKKLPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 L + +P + + LT ++++ + + L+ + K K+DF+ VS+E+R+P Sbjct: 584 LVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELKNDFVQHVSYELRSP 643 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 LT IIGF+++++ Q GPL N R EY ++I S +++L +VND+LD++ +++G M L++ Sbjct: 644 LTNIIGFTDLLRTQGVGPL-NERQAEYIDHISTSSSVLLTLVNDILDLATVDAGIMRLNY 702 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 + L++ + + + +E + + + + I+AD + +KQI L +L+NA +F+ Sbjct: 703 AEIDLNDLLDDVSMQIADRLHESGVALEITAPAYLGSIIADPQRLKQILLKLLANAANFS 762 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 P G I + H + + VRD G G++ + F S + RG G GLGL Sbjct: 763 PEGASISLE-CHREGTDFVFSVRDRGPGISPDMIATVFDRFATGAKSGK-RG-GAGLGLS 819 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 + + V + G I S P KGT + P + H Sbjct: 820 IVDSFVSLHHGDVTIDSEPGKGTTVVCRIPSVNIPH 855 >gi|168236004|ref|ZP_02661062.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737545|ref|YP_002115910.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713047|gb|ACF92268.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290872|gb|EDY30226.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|322614233|gb|EFY11165.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620953|gb|EFY17811.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624016|gb|EFY20850.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628245|gb|EFY25034.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633364|gb|EFY30106.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636059|gb|EFY32767.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639395|gb|EFY36083.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322643743|gb|EFY40294.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648855|gb|EFY45302.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655152|gb|EFY51462.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658017|gb|EFY54285.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664118|gb|EFY60317.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667087|gb|EFY63259.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673135|gb|EFY69242.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677874|gb|EFY73937.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681048|gb|EFY77081.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685645|gb|EFY81639.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194784|gb|EFZ79971.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196535|gb|EFZ81683.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323205052|gb|EFZ90035.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207747|gb|EFZ92693.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212701|gb|EFZ97518.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214816|gb|EFZ99564.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222545|gb|EGA06910.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226425|gb|EGA10633.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230696|gb|EGA14814.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234953|gb|EGA19039.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238992|gb|EGA23042.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244650|gb|EGA28656.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247266|gb|EGA31232.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251798|gb|EGA35663.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257485|gb|EGA41175.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263270|gb|EGA46807.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267522|gb|EGA51006.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272711|gb|EGA56117.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 918 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 134/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + NP ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTEL----NPTQRDHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 N++P ++ D ++Q+ N++ NAI FT SG I++ SN +V + V RDTG Sbjct: 394 IKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|56414910|ref|YP_151985.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|168242719|ref|ZP_02667651.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194451603|ref|YP_002046927.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197363838|ref|YP_002143475.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129167|gb|AAV78673.1| sensor protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194409907|gb|ACF70126.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197095315|emb|CAR60872.1| sensor protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205338112|gb|EDZ24876.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 918 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 134/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + NP ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTEL----NPTQRDHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 N++P ++ D ++Q+ N++ NAI FT SG I++ SN +V + V RDTG Sbjct: 394 IKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|144900968|emb|CAM77832.1| sensor histidine kinase protein [Magnetospirillum gryphiswaldense MSR-1] Length = 845 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 96/377 (25%), Positives = 183/377 (48%), Gaps = 11/377 (2%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-F 497 DT +R + + L+ +G+A+ + + +N A ++++G V+D+ +P Sbjct: 469 DTLAMERSFNTAMAVQRATLDHLHEGLAVFGDDRRLKLSNPAFARMWGLSVDDLAGEPHL 528 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL----GSTKEEKLLSLRIIIKKLPFSSC 553 +E+ P R+ L + G + E+ + + +P Sbjct: 529 NELVERLRPYFEGRPDRASTWAPARERLLALVGERRGGEWRLERQDGMILDCASVPLPDG 588 Query: 554 YSL-TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 SL D+++ + + L + + KS+F++ VS E+ PLT IIGF+E++ + Sbjct: 589 ASLLAFLDVTDTARVERALIERNEALAAADTLKSEFMSNVSAEVAKPLTTIIGFAEMLDS 648 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 FG L + R +Y I +GN + ++ D+LD++ IE+G + L + V + +S + Sbjct: 649 DYFGKL-SKRQHDYMKGIVEAGNALKSLIADILDLAAIEAGHLTLELDTVDIHPMLSSVL 707 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 LV+ EK++ + ++ I+AD R ++Q+ N++ NA+ +TP+GG I + Sbjct: 708 GLVRERVREKKLQLDFDCPLDMGWIVADQRRLRQVMFNLIGNAVKYTPNGGAIAVRAER- 766 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + EV L V DTG G+ ++E+ K F + + Q +G GLGL L + V+ + G Sbjct: 767 RDGEVALIVADTGPGIPPEDMERVFKSFVRTIHDGQ---DGAGLGLALVRRFVELHGGTV 823 Query: 793 YIFSTPAKGTLIEIIFP 809 + S P +GT + + P Sbjct: 824 ELDSVPGQGTTVTVRLP 840 >gi|62181468|ref|YP_217885.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129101|gb|AAX66804.1| sensory histidine kinase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715952|gb|EFZ07523.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 918 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 134/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + NP ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTEL----NPTQRDHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 N++P ++ D ++Q+ N++ NAI FT SG I++ SN +V + V RDTG Sbjct: 394 IKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|161501988|ref|YP_001569100.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863335|gb|ABX19958.1| hypothetical protein SARI_00004 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 918 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 134/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + NP ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTEL----NPTQRDHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 N++P ++ D ++Q+ N++ NAI FT SG I++ SN +V + V RDTG Sbjct: 394 IKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|197264060|ref|ZP_03164134.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197242315|gb|EDY24935.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 918 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 134/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + NP ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTEL----NPTQRDHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 N++P ++ D ++Q+ N++ NAI FT SG I++ SN +V + V RDTG Sbjct: 394 IKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|198245109|ref|YP_002216932.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205353904|ref|YP_002227705.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|197939625|gb|ACH76958.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205273685|emb|CAR38675.1| sensor protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326624696|gb|EGE31041.1| signal transduction histidine-protein kinase BarA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629016|gb|EGE35359.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 918 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 134/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + NP ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTEL----NPTQRDHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 N++P ++ D ++Q+ N++ NAI FT SG I++ SN +V + V RDTG Sbjct: 394 IKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|120556772|ref|YP_961123.1| integral membrane sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] gi|120326621|gb|ABM20936.1| integral membrane sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] Length = 1127 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 117/433 (27%), Positives = 203/433 (46%), Gaps = 45/433 (10%) Query: 403 IQWNRENSL--AMTFIPFEKANQFPE-NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 I W A F+P +Q ++ ++ EPEDV + + + LC L+ Sbjct: 474 IAWKTGGRFYTARPFVPLATDHQLVGCSICEHRFEPEDVT---HCPAYDGAICSLCCSLD 530 Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519 A + A G + + + P+ LR FL + V+N + +LSL Sbjct: 531 ARCED-ACKPGAGYQEQMQQFLGRFLPAPLLSALRSRLGHFL--SLLVVINGFSALLLSL 587 Query: 520 DLRQT----LEKITLGSTKEEKLLSLRIIIKKLPFSSCY--------------------S 555 +T L + TL S K+ + +I+ + C+ Sbjct: 588 IYFKTPVASLAEATLLSVTLWKVFFILVIVTGV---ICWLFVLAHESRVVAEEESRRQTR 644 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L +I ++ L AK+ AE + KS +L +SHE+R+PL AI+G++++++N Sbjct: 645 LLTEEIVAHERTDQALQQAKEQAEAANGAKSRYLTGISHELRSPLNAILGYAQLMENDDS 704 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P P E I RSG + D++ LLDISKIE+G+++LH + V + + + +++ Sbjct: 705 VP---PHRKEALGVIRRSGEYLADLIEGLLDISKIEAGRLDLHRDQVRIGLLMEQLVTMF 761 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 +L A EK + + +P ++ D + ++QI +N+LSNAI +T G +S T Sbjct: 762 RLQAEEKGLAFDYHCPHPLPELVTTDEKRLRQILINLLSNAIKYTDQGS---VSLTLRYR 818 Query: 735 EEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +V VRDTG G+ +E+ +PF +I N Q R GTGLGL + + + + G Sbjct: 819 SQVAEFTVRDTGEGIAAENIERIFRPFERIRNPGQSR-TGTGLGLTITRLLTEIMGGDIS 877 Query: 794 IFSTPAKGTLIEI 806 + S P +G++ ++ Sbjct: 878 VESEPGEGSVFKV 890 >gi|311109196|ref|YP_003982049.1| sensory box protein 11 [Achromobacter xylosoxidans A8] gi|310763885|gb|ADP19334.1| sensory box protein 11 [Achromobacter xylosoxidans A8] Length = 1111 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 85/246 (34%), Positives = 130/246 (52%), Gaps = 9/246 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E Q +L AK A++ ++ KS FLA +SHEIRTPL AI+G E++ R P+ Sbjct: 483 DVTEKYQLAQRLREAKAAADRGNAAKSAFLAAMSHEIRTPLHAILGHLELLSRSRLAPVQ 542 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + S L+L ++D+LD SKIE+G+++L L E S A+S+ A Sbjct: 543 RNRL----ETVRASSGLLLATISDVLDFSKIEAGELSLEQTEFDLLEVASRALSMFAPQA 598 Query: 680 NEK--RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 K +L A +P + D + Q+ N+LSNAI FT GQ+++ T + Sbjct: 599 QAKGLALLGELGAALRLP-MRGDATRLGQVIHNLLSNAIKFTDQ-GQVVLR-VRTDTTSI 655 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V D+G+GMT + + + F Q + R GTGLGL L +V+A G + S Sbjct: 656 AIEVEDSGIGMTEEQTQSVFRAFSQADATIGRRYGGTGLGLTLCCRLVEAMGGSLSVRSE 715 Query: 798 PAKGTL 803 P +G+L Sbjct: 716 PGRGSL 721 >gi|288942307|ref|YP_003444547.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897679|gb|ADC63515.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1436 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 115/395 (29%), Positives = 185/395 (46%), Gaps = 36/395 (9%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 E V+TR + ++ E +L ILE+++DG+ ++ G N A + GY E +L + Sbjct: 690 ELVETRTRELQLAEEHSRL--ILESSADGLYGVDIAGRTTFVNPAACAMLGYTPEQLLGR 747 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 P + + ++ + + L L TL + +E P YS Sbjct: 748 PSHEIIHHSHVDGRHYPMEDCL---LHSTLLNGEVLRGDDEVFWR----ADGTPLPVSYS 800 Query: 556 --------------LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 ++ D+S KQ + A AE+ + KS+FLA +SHEIRTPL Sbjct: 801 SHPIRREGEIVGAVVSFIDVSTQKQAEAAREAALAEAERLARLKSEFLANMSHEIRTPLN 860 Query: 602 AIIGFSEVIKNQRFGPLGNP-RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 A++GF+++ + +P R + I SG L+L I+ND+LD SKIE+GK+++H Sbjct: 861 AVLGFAQIGARE-----TDPNRARTFFRRILDSGQLLLGIINDILDFSKIEAGKLDIHDA 915 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719 V L + ++ L+ A +K + N+P + D + Q+ N+LSNA+ FT Sbjct: 916 EVDLRAVIERSVDLLTTRAKDKGLRFSLEEDPNLPATFMGDDLRLSQVLANLLSNAVKFT 975 Query: 720 PSGGQIIISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 G T EE ++ V DTG+GM L +PF Q S R G+GLG Sbjct: 976 DQGA----VTFGIRREEGWIVFSVEDTGIGMHEDYLANLFQPFEQADGSITRRYGGSGLG 1031 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 L ++K +V+ G+ +S +GT E PL + Sbjct: 1032 LAISKRLVELMGGEIRAWSRFGEGTRFETRLPLIE 1066 >gi|172035136|ref|YP_001801637.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142] gi|171696590|gb|ACB49571.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142] Length = 835 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 76/253 (30%), Positives = 141/253 (55%), Gaps = 5/253 (1%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+++ +Q +L+ + + K +FLA +SHE+++PLTA++G S +++ ++ G L Sbjct: 311 DVTQQQQLCQELAAKNADLVQLNRLKDEFLACISHELKSPLTAVVGLSSLLQEEKIGDL- 369 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI-SLVQLY 678 NPR + YA I RSG ++ +VNDLLD++++E+G++ L F PV++ E A S+ + Y Sbjct: 370 NPRQVHYAQLIYRSGRQLMTLVNDLLDLTRLETGQLKLSFSPVNIQEICHRAYHSIAEKY 429 Query: 679 --ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 ++K + + ++LAD + Q+ +++L NA+ FT +GG+ + + + Sbjct: 430 KGKSDKPLDFSLDIEVGLHQLLADELRLHQMLVHLLDNAMKFTQTGGKFGLKVSRW-EDW 488 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + V DTG+G+ + F Q+ N + EGTGLGL L + + A+ G S Sbjct: 489 LAFTVWDTGIGIPEESQHLIFQKFQQLENPLTRQFEGTGLGLVLTQRLARAHGGDISFVS 548 Query: 797 TPAKGTLIEIIFP 809 +G+ ++ P Sbjct: 549 KAGQGSQFTLLLP 561 >gi|56479140|ref|YP_160729.1| sensory transduction histidine kinase [Aromatoleum aromaticum EbN1] gi|56315183|emb|CAI09828.1| Sensory transduction histidine kinase [Aromatoleum aromaticum EbN1] Length = 491 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 104/359 (28%), Positives = 168/359 (46%), Gaps = 7/359 (1%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV----MNHY 512 +L++ DGI I+N G IL NR LFGY +++ +P L Q S +HY Sbjct: 132 LLDSMPDGIVIVNPTGHILIANRQAEWLFGYDRDELRARPIEDLLPQRFRSAHKGHRSHY 191 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 + + + LE L E + + + K + + D+SE + + L Sbjct: 192 FSTPRTRAMGAGLELYGLRKDGTEFPVEISLSPLKTEETPVVMSAIRDVSERRGFEQALQ 251 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 + K FLA +SHE+RTPL A+IGF+ + + G L NP + Sbjct: 252 EKNLELLAANRAKDHFLASMSHELRTPLNAVIGFTGTLLMKLPGEL-NPEQTRQLEIVRN 310 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 + +L ++NDLL+++KIE+GK+ L+FEP+ V E + ++ A K + + + + Sbjct: 311 NARHLLALINDLLNLAKIEAGKIELNFEPIDCGALVGEIAASLRPQALSKGLELILATQS 370 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQII--ISTTHTSNEEVILRVRDTGVGMTN 750 + D R++ QI +N++ NAI FT G I + + L V DTG G+ Sbjct: 371 DPIVFETDRRALSQIIINLVGNAIKFTLHGSVRIDLVLEEAGKKRRLALSVSDTGPGIGE 430 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 EL + F Q S+ EGTGLGL L++ + G+ ST G++ +I P Sbjct: 431 EELSSLFEAFVQGHASRMKGVEGTGLGLHLSRKLAVLLGGELSCTSTLGTGSVFTLILP 489 >gi|260060733|ref|YP_003193813.1| PAS/PAC Sensor Hybrid Histidine Kinase [Robiginitalea biformata HTCC2501] gi|88784863|gb|EAR16032.1| PAS/PAC Sensor Hybrid Histidine Kinase [Robiginitalea biformata HTCC2501] Length = 1455 Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 154/291 (52%), Gaps = 26/291 (8%) Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 T+E+K L I I + +H+ ++Q + AK AE + KS FL+ V Sbjct: 946 TQEDKKLLTTIAIN-------VGVALHNADLYEQAR----EAKARAEDANEAKSAFLSTV 994 Query: 593 SHEIRTPLTAIIGFSEVIK---NQRFGPLGN----------PRYIEYANYIDRSGNLVLD 639 SHE+RTPLT+++GF+++I+ ++ P + E + + G + Sbjct: 995 SHELRTPLTSVLGFAKIIRKRLTEKIFPAVTVDDQKIKRTMKQVSENLDVVVSEGERLTT 1054 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699 ++ND+LD++KIESG+M+ + +P+ L + + A+S EK++ ++ + +++P I Sbjct: 1055 LINDVLDLAKIESGRMDWNMKPIFLQDVIGRAVSATSSLFEEKKLQLKKNVPDDLPLING 1114 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759 D + Q+ +N+LSNA+ FT G I + ++I+ V+DTG+G+ + K + Sbjct: 1115 DEDKLIQVVINLLSNAVKFTKKGSVTI--DAYREENQLIVEVQDTGIGIAEEDKHKIFER 1172 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F Q ++ + +GTGLGLP+ + +++ + G ++ S P G+ P+ Sbjct: 1173 FRQAGDTLTDKPQGTGLGLPICREIIEHHGGIIWMKSEPGVGSTFFFSIPM 1223 >gi|298493114|ref|YP_003723291.1| CBS sensor hybrid histidine kinase ['Nostoc azollae' 0708] gi|298235032|gb|ADI66168.1| CBS sensor hybrid histidine kinase ['Nostoc azollae' 0708] Length = 1118 Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 79/265 (29%), Positives = 142/265 (53%), Gaps = 17/265 (6%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E +Q +L+ + + K +FLA +SHE++TPLTA++G S ++ +Q+ G L Sbjct: 381 DVTEQQQLFKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSRLLVDQQLGEL- 439 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N R YA+ I +SG ++ ++ND+LD++++E+G+M L PV + E A+S V+ Sbjct: 440 NERQARYASLIHQSGRHLMSVINDILDLTRMETGQMELTPSPVQIREVCDHALSEVKTLH 499 Query: 680 NEKRILIRTSFANN---------------IPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 N+ I +S + + + +I+AD ++Q+ +++LSNA FT + G+ Sbjct: 500 NQPSKFIHSSRSESKHSQDHQFSLSIEPGLEQIVADELRLRQMLVHLLSNAFKFTETSGE 559 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 I + + V DTG+G+ ++ + F Q+ N + EGTGLGL L +A+ Sbjct: 560 IGLRVNRWEG-WIAFTVWDTGIGIPEHQQHLIFQKFQQLENPLTRQFEGTGLGLVLTRAL 618 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809 + G S KG+ ++ P Sbjct: 619 ARLHGGDVSFLSQEGKGSQFTLLLP 643 >gi|182678924|ref|YP_001833070.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634807|gb|ACB95581.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 816 Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 84/254 (33%), Positives = 137/254 (53%), Gaps = 10/254 (3%) Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 C S T DIS+ K+ + L+ AK AE+ + K +FLA +SHEIRTP+ +IG ++++ Sbjct: 115 CGSCT--DISDLKRAEVALTRAKAEAEQANVAKGEFLANMSHEIRTPMNGVIGMAQLLDG 172 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + + EY + I S + ++ ++ND+LD SKIE+GK+ L P L + + + + Sbjct: 173 TEL----SVQQREYVSIILHSADTLMRLINDVLDFSKIEAGKLELESIPFQLRDTLGDTL 228 Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTT 730 + A K + + IP ++ D ++QI N++ NAI FT G ++ + Sbjct: 229 HSLAARAAHKGLELAYHVPVEIPDALVGDPTRLRQIITNLVGNAIKFTEKGEVVVDVRLK 288 Query: 731 HTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 T++ +V L VRDTG+G++ + EK FGQ S R GTGLGL +A + + Sbjct: 289 ETTDTDVQLEFEVRDTGIGISKNQQEKVFTAFGQADASTTRRYGGTGLGLTIAAQLAEKM 348 Query: 789 MGKFYIFSTPAKGT 802 GK + S P G+ Sbjct: 349 GGKIKLESEPGVGS 362 >gi|300869423|ref|ZP_07114008.1| hypothetical protein OSCI_4080002 [Oscillatoria sp. PCC 6506] gi|300332553|emb|CBN59206.1| hypothetical protein OSCI_4080002 [Oscillatoria sp. PCC 6506] Length = 1748 Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 84/301 (27%), Positives = 157/301 (52%), Gaps = 24/301 (7%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 ++++E +L +ILEA++D I I + G + N A+ KL G + V +Q Sbjct: 1351 RKRLEQAQNRLIAILEASTDYILIADLTGNAIWNNSALKKLRGLDAD-------AVVTQQ 1403 Query: 504 NTPSVMNHYLTEILSLDLRQTL-----------EKITLGSTKEEKLLSLRIIIKKLPFSS 552 N + E+L +Q + E + L + ++ +S ++ + P Sbjct: 1404 NAADYHPQWAVEMLE---QQAITIAIAKGSWLGENVLLDAENQQIPVSQLLLAHRSPHGE 1460 Query: 553 C--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 +S M D+ +K+ + +L + + K +FLA +SHE+RTPL AI+G +E + Sbjct: 1461 VEFFSTIMRDMRVYKEYEQQLERTNAELIRATRLKDEFLANMSHELRTPLNAILGMTEGL 1520 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 ++ FG + N I+ I+ SG +L+++ND+LDI+KIESG+M L + VS++ Sbjct: 1521 QDGVFG-IVNESQIKALETIEHSGTHLLELINDILDIAKIESGQMELEYTSVSINYLCQS 1579 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 +++ ++ A +K + + N+P + D R ++Q+ +N+L+NA+ FTP GG I + + Sbjct: 1580 SLAFIKQQALQKHLQVDIKIPLNLPDLWVDERRIRQVLINLLNNAVKFTPEGGHITLEVS 1639 Query: 731 H 731 Sbjct: 1640 R 1640 >gi|255037080|ref|YP_003087701.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254949836|gb|ACT94536.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 667 Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 106/348 (30%), Positives = 174/348 (50%), Gaps = 23/348 (6%) Query: 478 NRAVSKLFGYP---VEDILRKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 N+ + K+ GY VE RK + E++ + HY S+ + +EK Sbjct: 171 NKQIWKILGYSEHEVETDTRKGLARIINERDQHTFRAHYNHMRYSVKDAEVVEKEF--RL 228 Query: 534 KEEKLLSLRIIIKKLPFSSCYSL-------TMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 K + + II +++PF T DI+ K + +L AKK AE+ + KS Sbjct: 229 KHKNGSEIWIITREVPFKRNARGRVQEVLGTAIDITARKIAEKELIQAKKDAEEATRIKS 288 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 DFL+ +SHEIRTP+ AIIGF++++ + F G + +Y N I S + +L I+ND+LD Sbjct: 289 DFLSTMSHEIRTPMNAIIGFTDLLLSSGF--TGQEQ--QYLNTIKYSADNLLVILNDILD 344 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVK 705 SKIE+GK L L E + + ++ A EK I + ++P+I + D + Sbjct: 345 FSKIEAGKFGLENFEFDLREKLGYLMKTFEIRAKEKSIQFTFQCSTDVPQIVMGDPYRLN 404 Query: 706 QIALNILSNAIHFTPSGGQIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 QI +N++ NAI FT GG + +S H + ++ + V D+G+G++ +L F Sbjct: 405 QIMVNLIGNAIKFTEEGGSVEVSVHLDKDHGDSIDLKIDVSDSGIGISEDKLSVIFDSFS 464 Query: 762 QIPNSQQIRG-EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 Q N+ +R GTGLGL + + + + G ST KG+ ++ Sbjct: 465 QAHNNNAVRNFGGTGLGLSITRKITELMNGSISARSTLGKGSTFTVVL 512 >gi|149912708|ref|ZP_01901242.1| sensor histidine kinase/response regulator [Roseobacter sp. AzwK-3b] gi|149813114|gb|EDM72940.1| sensor histidine kinase/response regulator [Roseobacter sp. AzwK-3b] Length = 728 Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 110/406 (27%), Positives = 200/406 (49%), Gaps = 42/406 (10%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 D K+K+EI +L ++ DG A + + +++ N + +F +E + KP Sbjct: 66 DLTAAKQKVEIAERRLWHSIQTIRDGFAFFDADSRMIAANDSWLAVFDG-LEAV--KPGI 122 Query: 499 VFLEQNTPSVMNHYLTE--ILSL------DLRQTLEKITLGSTKEEKLLSL------RII 544 ++E + +LTE I+++ R+ + G+ E +++ L ++I Sbjct: 123 SYIE------ILQFLTEEGIVNIGNTPPAQWRERMLDRWQGNAPEPEVIRLWNGAYIKLI 176 Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 ++ SL + DI+E + +L A++ AE + KS FLA +SHEIRTP+ ++ Sbjct: 177 DERGQGGDVVSLAL-DITETILREKELQDARRRAEAANHAKSSFLANMSHEIRTPMNGVV 235 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G +E++ + N YAN I +SG +L I+ND+LD SKIE+ K++LH EP L Sbjct: 236 GMAELLMDTDLTEEQNL----YANTIRKSGEALLVIINDVLDYSKIEAEKLHLHEEPFDL 291 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG- 722 + V E + L+Q A +K + + + +P R D ++Q+ N++ NA+ FT G Sbjct: 292 ERTVHELVMLLQPNARDKELELLVDYDMFLPTRFHGDPGRIRQVLTNLIGNAVKFTEKGH 351 Query: 723 ------GQIIISTTHTSNEEVILRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 G + + + I +R DTG+G+ + F Q+ +++ R E Sbjct: 352 VLVRVVGMPAAAPESPEHADAIAHLRITVEDTGIGIAPDKQAHIFGEFNQVEDAKNRRFE 411 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSHP 816 GTGLGL +++ ++ G +I S +G+ I + P+++ P Sbjct: 412 GTGLGLAISRKLIAMMQGDIWIGSEEGRGSTFGISLNLPVHERLDP 457 >gi|83310940|ref|YP_421204.1| hypothetical protein amb1841 [Magnetospirillum magneticum AMB-1] gi|82945781|dbj|BAE50645.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 1616 Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 90/278 (32%), Positives = 141/278 (50%), Gaps = 9/278 (3%) Query: 530 LGSTKEEKLLSLRII-IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 L + EE+ + + + I ++ D+S K + L+ AK++AE + KSDF Sbjct: 830 LDAPGEERWVRMEAVPIVAQAGGGTWAGFFQDVSAEKLAEAALTRAKELAEDATRMKSDF 889 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 LA +SHEIRTP+ AIIG S + PR +Y I +G +L I+ND+LD S Sbjct: 890 LANMSHEIRTPMNAIIGMSHLALKTEL----TPRQHDYVKKIQSAGQHLLGIINDILDFS 945 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQI 707 KIE+GK+ + LD+ + +L+ K + + + +PR L D + QI Sbjct: 946 KIEAGKLAVEHTDFELDKVLDNIANLLTEKTRAKSLELVFDIPSEVPRTLVGDSLRLGQI 1005 Query: 708 ALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIP 764 +N +NA+ FT +G II S EV+L VRDTG+G+T + + + F Q Sbjct: 1006 LINYANNAVKFTENGEIDIIARVKERSETEVLLYFAVRDTGIGITAEQAARLFQSFEQAD 1065 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 S + GTGLGL ++K + + G+ + S KG+ Sbjct: 1066 TSTTRKFGGTGLGLAISKRLAELMGGEVGVESEYGKGS 1103 >gi|54309013|ref|YP_130033.1| hypothetical protein PBPRA1827 [Photobacterium profundum SS9] gi|46913445|emb|CAG20231.1| hypothetical protein PBPRA1827 [Photobacterium profundum SS9] Length = 693 Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 81/258 (31%), Positives = 135/258 (52%), Gaps = 7/258 (2%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y T DI+ KQ +L A+K AE ++ KS+FLA +SHEIRTPL A++G + + + Sbjct: 300 YRGTAKDITNRKQRLVELQLARKQAETANNAKSEFLAMMSHEIRTPLNAVLGLMDTLVDS 359 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + + +E+ + +++S L+L I+ND+LD+S+IESGK L + + ++VS ++ Sbjct: 360 GL----DKKQMEWVSQMEQSAQLLLTIINDILDLSRIESGKFELFNTDICIADSVSLVVN 415 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + A K I + T ++P +L D + Q+ N++ NAI FT G + + Sbjct: 416 QLNEQAKRKNITLTTQIDESVPGSMLGDKNRITQVMFNLIGNAIKFTNVGS--VRVSVKA 473 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 N + + V DTG+G+ Y PF Q S R GTGLGL ++ ++ G Sbjct: 474 VNNHIEIAVTDTGIGIAPYAQNTLFNPFIQADGSITRRYGGTGLGLAISMHLIKKMDGNI 533 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S G+ + P+ Sbjct: 534 SLDSMLNVGSCFTVSIPI 551 >gi|298530450|ref|ZP_07017852.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509824|gb|EFI33728.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1162 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 101/371 (27%), Positives = 184/371 (49%), Gaps = 23/371 (6%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 +++K+ + Q S+ TSD + + + I + N +++FG+ +E++ + ++ Sbjct: 269 SEKKLLTQKAQFESLFTNTSDAMVYFDADLKIFNVNTRFTEMFGHDLEEVRGRNIIDVVD 328 Query: 503 QNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYSLT--- 557 HY IL+ EK+ + T+ + R +++K P ++T Sbjct: 329 PEGKET--HYGAYRILAG------EKVEMECTRYSRDGEPREVLLKGGPVLVDGNITGGF 380 Query: 558 --MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 DIS+ K + ++ A+ AE+ S KSDFLA +SHEIRTPL ++ +++ Sbjct: 381 AVYSDISQRKNYEKEIIRARDAAEEASRAKSDFLANMSHEIRTPLNGVVSMMSLLEETSL 440 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G P EY + S +L+I+ND+LD S+IE+G++ L + L+ +S + L+ Sbjct: 441 G----PEQREYVDMATISSESLLNIINDILDFSRIEAGRLELTRQNFDLEREISRVMLLL 496 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTS 733 A K + + + P R+ D ++QI N++ NA+ FT G ++ +S Sbjct: 497 TKRARSKEVELLVDYDLQAPRRVRGDNLRLRQILYNLVGNAVKFTEKGYILVQVSLAEAG 556 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 E+ L+ V+DTGVG+ + EK + F Q+ S R GTGLGL +++++V G Sbjct: 557 EEKARLKISVQDTGVGIPVHMQEKIFEHFTQVDYSSTRRHGGTGLGLAISRSLVRLMGGD 616 Query: 792 FYIFSTPAKGT 802 + S +G+ Sbjct: 617 LQVMSREGEGS 627 >gi|167768191|ref|ZP_02440244.1| hypothetical protein CLOSS21_02747 [Clostridium sp. SS2/1] gi|167709715|gb|EDS20294.1| hypothetical protein CLOSS21_02747 [Clostridium sp. SS2/1] gi|291560213|emb|CBL39013.1| Signal transduction histidine kinase [butyrate-producing bacterium SSC/2] Length = 982 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 107/348 (30%), Positives = 175/348 (50%), Gaps = 17/348 (4%) Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNH---YLTEILSLDLRQTLEKITLGSTKEEK 537 V KL G +E I R+ + E ++ + + YL EI + ++ + T E + Sbjct: 365 VEKLLGITIEQI-REDICILGELHSEDMKDSKKDYLKEIQVHEQQEWDFECVHQKTGERR 423 Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + ++ + Y L M D + K+ LS A AE + KS FL+ +SH+IR Sbjct: 424 WFHSVAMGSEVNGNKKYILVMSDRTADKKMNQALSDAVYAAENANQAKSTFLSNMSHDIR 483 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 TP+ AIIGF+ + + N + + +Y I S N +L ++ND+LD+S+IESGK++ Sbjct: 484 TPMNAIIGFTTL----AVSNIDNKKMVRDYLGKILSSSNHLLSLINDILDMSRIESGKIH 539 Query: 657 LHFEPVSLDEAVSEAISLV--QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714 L VSL + + + +++ Q++A + + + N + D + QI LN+LSN Sbjct: 540 LEETEVSLSDVLHDLKTIISGQIHAKQLELYMDAMDVTN-EDVYCDKTRLNQILLNLLSN 598 Query: 715 AIHFTPSGGQIIIST-----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 AI FTP+GG I + T + +RV+D G+GM+ ++K PF + +S Sbjct: 599 AIKFTPAGGMISVRLKQYPGTQRERQLYEIRVKDNGIGMSEDFVQKLFSPFERERSSTVS 658 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 R +GTGLG+ + K +VD G I + KGT + PL S H Sbjct: 659 RTQGTGLGMAITKNIVDMMGGNIEIQTEQGKGTEFIVRLPLRIQSKHH 706 >gi|75907252|ref|YP_321548.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75700977|gb|ABA20653.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1820 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 79/239 (33%), Positives = 131/239 (54%), Gaps = 12/239 (5%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK+ AE + KS+FLA +SHEIRTP+ A+IG + ++ + + ++ + Sbjct: 1129 LEQAKRAAEAANRAKSEFLAMMSHEIRTPMNAVIGMTGLLLDTEL----TSQQRDFVETV 1184 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG+ +L I+ND+LD SKIESGK+ L +P + V + I L+ A +K I + Sbjct: 1185 LTSGDALLSIINDILDFSKIESGKLELEEQPFEVRTCVEQVIDLLAAKAAQKDIELAYLI 1244 Query: 691 ANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNE------EVILRVR 742 +P +I DL ++QI N+L+NAI FTP G ++ + + + N+ E+I ++ Sbjct: 1245 HPQVPMQIAGDLTRLRQILTNLLNNAIKFTPEGEVVVSVRSQPSPNQKTKNCCEIIFTIK 1304 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ ++ +PF Q S + GTGLGL ++K + + G ++ S G Sbjct: 1305 DTGIGIAPETMDLLFQPFVQADASMTRKYGGTGLGLVISKRLGEMMGGYLWVESRGCVG 1363 >gi|332704672|ref|ZP_08424760.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554821|gb|EGJ51865.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 939 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 141/251 (56%), Gaps = 15/251 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV--IKNQRFGP 617 D++E Q + L AK+ A+ + KS+FLA +SHEIRTP+ I+G E+ +K+ Sbjct: 542 DVTEAVQIREALRQAKQEADAANKAKSEFLANMSHEIRTPMNGIMGMIELALLKDPSCPA 601 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 GN +E A +S + +LDI+ND+LD+SKIE+GK+ L P+ L V + + + L Sbjct: 602 RGN---LELAQ---KSAHHLLDIINDILDLSKIEAGKLELKSRPLVLRRIVEDVVGTLSL 655 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII---STTHTS 733 A+ K + + +++P R++ D ++Q+ +N++ NA+ FT G+I++ + T Sbjct: 656 AASRKGVSMHHYIESDVPERLMGDEMRLRQVLMNLVGNAVKFTHE-GRILVNVETVLRTD 714 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + LR V DTG+G+ L + F Q Q + GTGLGL ++K +V+ G+ Sbjct: 715 GGRICLRFTVSDTGIGIPEERLGDIFESFSQANIETQTKYGGTGLGLTISKLLVELMGGE 774 Query: 792 FYIFSTPAKGT 802 + STP G+ Sbjct: 775 VSVRSTPGHGS 785 >gi|254442407|ref|ZP_05055883.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198256715|gb|EDY81023.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 724 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 132/251 (52%), Gaps = 7/251 (2%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DISE K +L AK AE +S K FLA VSHE+RTPL I+G++E++ + + Sbjct: 327 RDISEQKSRHEELMKAKLAAESANSAKDRFLAMVSHELRTPLNPIVGYAEILAAK----I 382 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 +P + I S + +V+D+LD S IESG++++ E + + +S ++ Sbjct: 383 EDPMAQRFLKIIKESAKGMASLVSDILDYSMIESGRIDIEVETFRMSDLLSLVSRQIESV 442 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 A E+ I+ P + AD R + Q+ N+++NA FT +G +I S+ +++E Sbjct: 443 ALERGNKIQVDLDGGDPWVEADKRKLSQVVSNLVANACKFTQNGKILISSSASQTSKEAY 502 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V + V DTG+G+ ELE +PF Q+ + + G GLGL + + +V A G + Sbjct: 503 SVRIEVSDTGIGIPESELETIFEPFEQLGSVHKAETRGVGLGLAICRQLVGALGGTISVS 562 Query: 796 STPAKGTLIEI 806 S GT+ + Sbjct: 563 SQLGSGTIFTV 573 >gi|288958788|ref|YP_003449129.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288911096|dbj|BAI72585.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 413 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 79/240 (32%), Positives = 132/240 (55%), Gaps = 2/240 (0%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +LS A + A K K DFLA +SHE+RTPL +IIGF++V+ + G LG+P Y+EY Sbjct: 169 ELSDALEAARKADRAKLDFLAVMSHELRTPLNSIIGFADVLAGEGMGKLGHPDYLEYVKL 228 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+ SG +L +VN++LD ++ +G + + V++ + ++ ++ A K + + Sbjct: 229 IEESGRSLLTMVNNILDYTRGSTGSIEIQDSDVNIPQLLTGCADMLAPKAAGKGLALAVR 288 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 R+ D R ++++ LN+L NA+ FT GG + ++ V L VRD G G+ Sbjct: 289 PCPAF-RMRVDRRRLREMVLNLLDNAVKFTQPGGTVTVA-VEDRGAFVGLTVRDDGPGIP 346 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + PF Q +S R EG GLGLP+ + + + G + S P +GT++ I+ P Sbjct: 347 GDLMGRIFNPFTQAEHSLVRRHEGVGLGLPIVRRFAELHGGGVELDSAPGRGTMVTILLP 406 >gi|296107504|ref|YP_003619205.1| sensory box histidine kinase/response regulator [Legionella pneumophila 2300/99 Alcoy] gi|295649406|gb|ADG25253.1| sensory box histidine kinase/response regulator [Legionella pneumophila 2300/99 Alcoy] Length = 909 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 136/245 (55%), Gaps = 9/245 (3%) Query: 563 EWKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E +EKN +LS KK E++S KS+F+A +SHEIRTP+ +IGF+ V+ + PL Sbjct: 274 ELLEEKNIELSLEKKKTEEKSRQKSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL--- 330 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 ++Y I S +L I+ND+LD SKI++GK+NL P+ + + E +SL A++ Sbjct: 331 -QLDYVKTIKSSAQDLLSIINDILDFSKIDAGKLNLDCIPLDIRGCIDEVLSLASPNAHK 389 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---V 737 K I + N+P+ +L D +KQI N+++NA+ FT G +I + ++ + Sbjct: 390 KGIDLIPITDINVPKMVLGDPLRIKQIISNLVTNAVKFTDHGYVLIRTKIEQETDKDYTL 449 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + + DTG+G++ + K F Q S R G+GLGL + K + + G+ + S Sbjct: 450 LFAITDTGIGISPEDQTKLFTAFNQADTSITRRYGGSGLGLVICKKLCEEMHGRISLTSE 509 Query: 798 PAKGT 802 KG+ Sbjct: 510 INKGS 514 >gi|322418617|ref|YP_004197840.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320125004|gb|ADW12564.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 1224 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 89/269 (33%), Positives = 136/269 (50%), Gaps = 9/269 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +T DISE K+ + +L A + AE + KS+FLA +SHEIRTP+ A +G ++K Sbjct: 602 VTFFDISERKRAEEELRRATEAAEAATRAKSEFLANMSHEIRTPMNAALGMLYLLKQTGL 661 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + + EY + +L+L ++ND+LD SK E+GKM L P LD +S+ ++ Sbjct: 662 ----SDQQKEYLEKAQSASDLLLRVINDILDFSKAEAGKMALEQIPFRLDTVLSDLDNVA 717 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS 733 EK I +P +L D + Q+ LN+ NAI FT G ++ I+ Sbjct: 718 SAILGEKEIEFGAYVGEGVPEVLVGDPLRLGQVLLNLAGNAIKFTEKGKVEVEIALLALE 777 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 ++ LR V DTG+GM + E PF Q NS R GTGLGL + + +V G+ Sbjct: 778 EKDATLRFSVTDTGIGMDAEQQEALFTPFTQADNSTTRRYGGTGLGLAICRELVQLMGGQ 837 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 ++ S P +G+ I + P D + Sbjct: 838 MWVESEPGRGSSFSFI-ARFGRQQPGDAL 865 >gi|119493873|ref|ZP_01624438.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119452385|gb|EAW33576.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1373 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 108/367 (29%), Positives = 173/367 (47%), Gaps = 18/367 (4%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L ILE D I ++ IL N K+FGY + + + L N +V + Y Sbjct: 763 RLQGILENAEDAIISVDENQNILLFNHGAEKIFGYSPAEAIGQSLENLLPMNARNVHHQY 822 Query: 513 LTEILSLDL--RQTLEKI--TLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQ 566 +++ L+ R+ E+ G K + I KL + T + DI++ KQ Sbjct: 823 VSDFSHLECQSRKMGERSREVCGRRKTGEEFPAEASISKLKMRDGWIFTAILKDITKRKQ 882 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + L AK AE + KS+FLA +SHE+RTPL AI+GFS+++ P Sbjct: 883 AEMVLEQAKDAAEAANRAKSEFLANMSHELRTPLNAILGFSQLMNRD---PSLTSEQQNS 939 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 N I+ SG +L ++N +LD+SKIE+G+M L+ L + ++ L K + + Sbjct: 940 LNIINSSGEHLLTLINSILDLSKIEAGRMILNENSFDLHHLLDTLEKMLHLKVETKGLSL 999 Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-----SNEEV--I 738 N+P+ I D ++Q+ +N+L NAI +T GG + + S E V + Sbjct: 1000 LFERDENVPQFIKTDEGKLRQVLINLLGNAIKYTDKGGVSLKVKQQSYPLEKSPETVNLV 1059 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG G+++ E+ F Q ++ + +GTGLGLP+++ V G S Sbjct: 1060 FEVTDTGTGISSEEISTIFDAFVQTTTGRKSQ-QGTGLGLPISRKFVQMMGGDIRAKSEL 1118 Query: 799 AKGTLIE 805 GT E Sbjct: 1119 GTGTSFE 1125 >gi|90425981|ref|YP_534351.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] gi|90107995|gb|ABD90032.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] Length = 1022 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 87/265 (32%), Positives = 139/265 (52%), Gaps = 9/265 (3%) Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 SC TM S Q + L HA + AE + KS+FLA +SHEIRTPL ++G ++V+ Sbjct: 273 SCTLFTMFARSARAQNR-ILKHAVRRAEAANEAKSEFLANMSHEIRTPLNGVLGMADVLM 331 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 P+ YA I SG+L++ I+ND+LD++K++SG++ + V L + EA Sbjct: 332 RTDLTPVQR----NYAQLIVTSGSLLMTILNDVLDMAKLDSGQLAIKPCKVELQLQLKEA 387 Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 S A EK + + A ++PR + D ++QI N++ NA+ FT GG +I + Sbjct: 388 ASFYFAQAREKDLELVLDVAPDVPRHVQLDPMRLRQILGNLIGNALKFTSKGGVAVIVSY 447 Query: 731 HTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 +E+ + + V DTG+G+T + K F Q + Q EGTGLGL + K + +A Sbjct: 448 QHQDEKSGRLHISVVDTGIGLTEEQQGKLFGRFVQAEDDGQRHREGTGLGLAICKKLCNA 507 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYD 812 G+ + S G+ P+ + Sbjct: 508 MGGEIGVTSEKGVGSTFSFWIPVIE 532 >gi|296161928|ref|ZP_06844728.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] gi|295887804|gb|EFG67622.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] Length = 996 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 88/270 (32%), Positives = 140/270 (51%), Gaps = 14/270 (5%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D++ +Q +L+ A+ A+ ++ KS FLA +SHEIRTPL AI+G E+++ Sbjct: 477 ALSDVTAERQLARELTAARHAADSANAAKSAFLASMSHEIRTPLNAILGHLELLERL--- 533 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA--VSEAISL 674 P P + + S +L I+ND+LD SK+E+G+M+ FE + D A V +A S+ Sbjct: 534 PQAAP-VVARVRTVASSSRALLQILNDILDFSKVEAGEMS--FESIRFDAADLVRQATSM 590 Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 A K + + + +PR L D ++Q+ +N+LSNAI FT G I + Sbjct: 591 FMPLAQRKGLALTHTIDAALPRYYLGDPGRIRQMVVNLLSNAIKFTDRGSVSIEVSAGKG 650 Query: 734 NEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 N + ++RV DTG+G+ + F QI S R GTGLGL L K + + G Sbjct: 651 NPAIPLVIRVTDTGIGIPAKRQARVFDAFDQIDASITRRFGGTGLGLALCKRIAEGMGGT 710 Query: 792 FYIFSTPAKGTLIEIIFPLY---DTSHPHD 818 + S +G++ + PL DT+ H+ Sbjct: 711 IEMSSEEGQGSIFTVTLPLRHGDDTAPAHE 740 >gi|153869309|ref|ZP_01998953.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152074169|gb|EDN71053.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 589 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 110/381 (28%), Positives = 192/381 (50%), Gaps = 36/381 (9%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L ++ A +DG+ + N +G +L N A G P +++ Q+T + L Sbjct: 74 LSLVITAMADGLCVFNHQGQLLFLNPAAENYLGIPNQEL----------QHTNVLDCFEL 123 Query: 514 TEILSLDLR----QTLEKITLGSTKEEKLLSLRIIIKK-LPFSSCYS------------L 556 E ++ D+R + L+++ G + + L+ ++ LP S ++ L Sbjct: 124 HEKVNPDVRLATPELLQRLNCGHSFNDSNALLQCHNQQHLPVSCIFNPIIENQQVLGIVL 183 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN---- 612 DIS+ K + +L AK+ AEK S KS FL+ +SHE+RTP+ AI+G+SE++K Sbjct: 184 LFQDISDIKDVEAELIAAKEAAEKASQAKSLFLSSMSHELRTPMNAILGYSELLKEDLGV 243 Query: 613 --QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + F +Y I +G +L+++N +LD+++IE+GK+ + E V L E + E Sbjct: 244 ALEEFELEHVEDMQQYVGNILHAGWHLLELINKVLDLTRIEAGKLEVTIEKVELIELMKE 303 Query: 671 AISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 +S V A ++ I I A P L D +KQ+ +N+LSNA+ + G + I+ Sbjct: 304 CVSFVSPQAEKRAITIENKTAEIHPVYALVDRGRLKQVFINLLSNAVKYNRDKGSVTINL 363 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 T ++ E V + V DTGVG+T + K PF ++ + EGTG+GL + K +++ Sbjct: 364 TQSTLEYVRIEVADTGVGLTTEQKAKVFDPFTRLSGLNLV--EGTGIGLTITKRLLEIMD 421 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G+ + S G+ + P+ Sbjct: 422 GRIGVESEIDIGSTFWVEVPV 442 >gi|298486653|ref|ZP_07004711.1| Probable two-component sensor [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158868|gb|EFH99930.1| Probable two-component sensor [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 547 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 111/373 (29%), Positives = 181/373 (48%), Gaps = 39/373 (10%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT---------- 505 +++E T I + +REG++ N + ++F EDI+ K T + N Sbjct: 35 ALVEGTPHPIYVRDREGMLRMCNDSYLRVFSAQREDIIGKSATEGVLGNAFEAREYAADY 94 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH------ 559 VM IL LR ++T I LPF Sbjct: 95 QRVMASNTALILDRPLRIGDRQMT-------------IYHWILPFRDSLGEVQGIIGGWI 141 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DISE +Q L AK+ A+ S KS FLA +SHEIRTP+ A+IG E+ +K G L Sbjct: 142 DISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHGEL 201 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + IE A S N +LD++ D+LDI++IESG+++L+ E +L V + + Sbjct: 202 -DRSAIEVAY---SSANDLLDLIGDILDIARIESGRLSLNPERANLRRLVESVLRVFDGL 257 Query: 679 ANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE 736 A +K + + + I +L D KQI N++SNAI FTP G +I++ + + + Sbjct: 258 ARQKDLDLVLELDSRINADVLIDPLRFKQILSNLVSNAIKFTPMGRIKIVLQAAESPDPQ 317 Query: 737 VI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ + V+D+G+G++ + ++ +PF Q N+ Q+ G GLGL + +++ G Sbjct: 318 LLHLHITVQDSGIGISAEDQQRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMMGGNLS 377 Query: 794 IFSTPAKGTLIEI 806 + S P +GT I + Sbjct: 378 LDSVPGQGTRISM 390 >gi|94263693|ref|ZP_01287501.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455892|gb|EAT06051.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 1095 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 106/380 (27%), Positives = 180/380 (47%), Gaps = 38/380 (10%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L +I +A D I +++ GI+ N A + GY ++ + + + PS Sbjct: 182 RLKTITDAAQDAIIMMDTRGIVSFWNPAAETILGYTRDEAMGRDLHELI---MPSRYRKN 238 Query: 513 LTEILSLDLRQTLEKITLGSTKE--EKLLSLRIIIKKLPFSSCY-------SLTMHDISE 563 + ++T +G T E + R I +L SS + DI+E Sbjct: 239 FQAAFP-EFKKTGHGNAVGMTTELYAQTKDGREIPVELALSSVLIDDQWNAVGVVRDITE 297 Query: 564 WKQEKNKLS-HAKKI-------------AEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 K+ + +L H + + AE+ + KS+FLA +SHEIRTP+ AIIG S + Sbjct: 298 KKEAQEELQRHGRNLERKNVELNAARLEAEEATRAKSEFLANMSHEIRTPMNAIIGLSYL 357 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 N + +Y + S +L I+ND+LD+SK+E+GK+ + P +L + Sbjct: 358 CLQTDL----NNKQHDYLTKVHSSAQSLLGIINDILDLSKVEAGKLEIEHIPFALQDVTD 413 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QI 725 S++ + A EK++ A +IP L D + QI +N+ NAI FT G QI Sbjct: 414 HLTSIIHVKAQEKQLHFHVETAIDIPPFLVGDPLRLGQILINLCGNAIKFTSQGQVMLQI 473 Query: 726 IISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 +++ E+ + ++DTG GMT ++ + + F Q +S + GTGLGL ++K Sbjct: 474 VLAEQTEQTEQTARIHFAIKDTGTGMTPEQISRLFQAFSQADSSTTRQFGGTGLGLVISK 533 Query: 783 AMVDANMGKFYIFSTPAKGT 802 +V+ G+ + S P KG+ Sbjct: 534 QLVETMGGEISVESEPGKGS 553 >gi|83815062|ref|YP_444248.1| utilizing regulatory protein tutC [Salinibacter ruber DSM 13855] gi|83756456|gb|ABC44569.1| utilizing regulatory protein tutC [Salinibacter ruber DSM 13855] Length = 1067 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 132/242 (54%), Gaps = 3/242 (1%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + KL AK+ AE+ + KS FLA +SHEIRTPLT+IIGF+E I ++ G G+P +A Sbjct: 820 EQKLREAKETAEQVNEMKSAFLANMSHEIRTPLTSIIGFAEAIGDEVSG--GDPTVSRFA 877 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I++ G +L+ ++ +L++SK+E+ +M L P+++ E ++ +L + A + I +R Sbjct: 878 GLIEKGGRRLLETLDAVLNLSKLEAEEMELALAPLNVAEQAADTGALFEQQAEKAGIDLR 937 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 + AD +++ + N++SNA+ +T GG++ I + ++ +L V DTG G Sbjct: 938 VDVPSGPLWARADEGALRIVLRNLVSNAVKYTGDGGRVWIR-ARRAEDQAVLEVEDTGQG 996 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 M + + F Q + EGTGLGL + K VD G + + G+ + Sbjct: 997 MDPAAVSTLFEAFKQASEGKGREYEGTGLGLAVTKQAVDQMEGTIDVDTEKGVGSRFVVR 1056 Query: 808 FP 809 P Sbjct: 1057 LP 1058 >gi|95928637|ref|ZP_01311384.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95135427|gb|EAT17079.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 1079 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 81/254 (31%), Positives = 142/254 (55%), Gaps = 12/254 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ +L A+K AE+ + KS+FL+R+SHE+RTPL AI GFS+++ + R PL N ++ Sbjct: 682 KENITELKKARKQAEEANRAKSEFLSRMSHELRTPLNAINGFSQLMLSSRKNPL-NDKHR 740 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 ID +G +L+++N++LD+++IE+GK++L E V ++E + L+ A + ++ Sbjct: 741 SMVEQIDGAGKHLLELINEVLDLARIEAGKLSLSVEAVDPCHIINECLPLLHSLAEQHQV 800 Query: 685 LIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VIL 739 + P + AD KQ+ +N+LSNA + GG + T H E + Sbjct: 801 TFHSCCGEQTFPLVKADYTRTKQVLVNLLSNAAKYNRPGGDV---TIHVQANEPTGFLRF 857 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIP-NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +V D G+G+ + ++ PF ++ +S+ I EGTG+G+ + K +V+A G+ S Sbjct: 858 QVIDNGLGIAEEKQKQLFVPFARLAQDSENI--EGTGIGMTITKQLVEAMGGQIDFESRY 915 Query: 799 AKGTLIEIIFPLYD 812 +G+ PL D Sbjct: 916 GQGSTFWFTLPLAD 929 >gi|117926521|ref|YP_867138.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610277|gb|ABK45732.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1027 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 83/252 (32%), Positives = 136/252 (53%), Gaps = 5/252 (1%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E Q + L A++ AE+ S KSDFLA +SHEIRTP+ A+IG S+V+ PL Sbjct: 616 DITEQMQAQQVLEEARQAAEEASQAKSDFLASMSHEIRTPMNAVIGLSDVLAET---PL- 671 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 NP Y + R+ + +LD++N +LD+SKIESG+ L P L + S++++ A Sbjct: 672 NPEQQHYVTTLQRASHTLLDLINAILDLSKIESGRFELIERPFDLSDMAHGVCSVLRVQA 731 Query: 680 NEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +K + + + P ++ D ++QI +N++ NAI FT G + + Sbjct: 732 EQKGLSLALEMDETLPPFVVGDSPRLRQILINLIGNAIKFTEQGFVKVSVQARDQQRTLW 791 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + D+GVG+ ++E+ + F Q+ +S R G+GLGL ++K +V G + S Sbjct: 792 FGIADSGVGIAPTQVEQIFEKFTQVDSSVVRRFAGSGLGLAISKQLVGLMGGHIGVESRL 851 Query: 799 AKGTLIEIIFPL 810 +G+L PL Sbjct: 852 GEGSLFYFSLPL 863 >gi|21231797|ref|NP_637714.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768077|ref|YP_242839.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. 8004] gi|21113508|gb|AAM41638.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573409|gb|AAY48819.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. 8004] Length = 1364 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 106/395 (26%), Positives = 182/395 (46%), Gaps = 32/395 (8%) Query: 447 MEIEVMQLCSILEATSDGIAII--NREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQ 503 ++ V+Q + A G AII + G + N A KL GY +D++ R+ + F+E Sbjct: 489 VQFSVLQRAILAHA---GYAIIATDSSGFVTMFNPAAEKLLGYSADDVIGRRKASQFIEA 545 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKI----TLGSTKEEKLLSLRIIIKKLP----FSSC-- 553 + L E + TLE + +LG + + + ++LP S+ Sbjct: 546 DELQERALRLAEQTGTPVAGTLEAVAALTSLGRSDTSEWTYVSQDGRRLPVLLTLSTLRD 605 Query: 554 -------YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 Y D++E K + +L A A + KSDFLA +SHEIRTP+ AI+G Sbjct: 606 DNDQVIGYLGVAVDLTEQKLHEKQLRLAMDAARSANQSKSDFLANMSHEIRTPMNAILGM 665 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 +++ + IDRS +L+I+ND+LD SKIE+G+++L P L++ Sbjct: 666 LYLLQRSELPGAAQ----DMVTKIDRSARSLLEIINDILDFSKIEAGRIDLERAPFDLNQ 721 Query: 667 AVSEAISLVQLYANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 L++ + K + +I +L D + Q+ +N++ NAI FT G + Sbjct: 722 LFDNIADLMRSSLSAKPVEMIVEPLPRECRWLLGDALRINQVLVNLVGNAIKFTEQGEVV 781 Query: 726 IISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 + S + +++ VRDTG+G++ + PF Q S R G+GLGL ++ Sbjct: 782 LSVRRFPSGDPNKIKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTIS 841 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + +++ G + S P +G+ + L T P Sbjct: 842 RRLIELMGGALEVESVPGRGSEFYFVITLERTDPP 876 >gi|312961180|ref|ZP_07775685.1| ornithine cyclodeaminase [Pseudomonas fluorescens WH6] gi|311284838|gb|EFQ63414.1| ornithine cyclodeaminase [Pseudomonas fluorescens WH6] Length = 771 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 107/375 (28%), Positives = 189/375 (50%), Gaps = 32/375 (8%) Query: 457 ILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLT 514 I++ D GI ++ G + S N ++ GY ++I+ + F++F L + P L Sbjct: 270 IIDGVKDYGIFALDTAGHVTSWNNGAERIKGYTEQEIIGRHFSLFYLPEECPQHPEMALR 329 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLS 572 E + D T E S+ I + + +S DI++ + + L Sbjct: 330 EA-TRDGDYTEEGWRCRKDGTRFWASVVITAQYDGTGALRGFSKITRDITDRRAAEIALR 388 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQRFGPLGNPRYIEYA 627 A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ K Q+ + Sbjct: 389 TAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDAAKTQK----------AHV 438 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 +I R+G +L ++N++LDI+KIE+G + L+ P+ L + + EA++LV A + I ++ Sbjct: 439 GHILRAGQHLLTLINEVLDIAKIEAGSLALNIAPLPLTQVLQEALTLVSPMATDAGIELQ 498 Query: 688 --TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + A +I I+AD + + Q+ LN+LSNAI + GQ+ I T + + + V D G Sbjct: 499 PLPTLAADIG-IVADRQRLTQVLLNLLSNAIKYNRRDGQVSIEVT-VDAQRIGVSVCDCG 556 Query: 746 VGMTNYELEKAMKPF---GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+ L + PF G PN EG+GLGL L+K++++ G+ ++ S G+ Sbjct: 557 KGIAADHLGQLFTPFERLGADPNV-----EGSGLGLALSKSLLENMDGQLHVHSQAGIGS 611 Query: 803 LIEIIFPLYDTSHPH 817 + P P Sbjct: 612 RFTLELPWVRLHAPQ 626 >gi|282898637|ref|ZP_06306625.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505] gi|281196505|gb|EFA71414.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505] Length = 623 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 85/272 (31%), Positives = 142/272 (52%), Gaps = 6/272 (2%) Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 + I K + +S Y + I K L E+++ K+ FLA SHEIRTPLT Sbjct: 196 QFIQKAIKYSWTYLIQTQKIQTLKYSYQSLLQFNYNLERKNKLKNQFLANTSHEIRTPLT 255 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 +IIGF+E++ Q + R+ EY I SG +L ++ND+LD+SKIE+ ++ + +E Sbjct: 256 SIIGFTELLLAQGYEA-ERERHQEYLQIIQSSGKHLLSLINDILDLSKIEANQLEVQWEV 314 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 ++ ++LV+ A +K + ++ ++ +L D +KQ+ LN+L NAI FT Sbjct: 315 ANIPSLCKSVLALVKEKAGDKGLKLQLEINEDVNTLLVDPLRLKQMLLNLLFNAIKFTNV 374 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP---NSQQIRGEGTGLGL 778 G + + + V DTGVG++ +L +P+ Q+ N+Q + GTGLGL Sbjct: 375 GS--VGLRVVLKDSWLRFTVWDTGVGISQEDLSLLFRPYTQLVNTINTQLDKNHGTGLGL 432 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + K + + + G + S +G+ II PL Sbjct: 433 IVTKQLAEIHGGSIEVRSQLNQGSEFTIILPL 464 >gi|89072878|ref|ZP_01159435.1| sensor protein LuxQ [Photobacterium sp. SKA34] gi|89051400|gb|EAR56855.1| sensor protein LuxQ [Photobacterium sp. SKA34] Length = 576 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 137/250 (54%), Gaps = 7/250 (2%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 N+ AKK AE DFLA ++HE+RTPL ++G +E++++ PL N + + Sbjct: 198 NQAIDAKKRAEDSEQSTRDFLAMINHELRTPLNGLLGSAELLQDT---PLDNDQQ-KLLT 253 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 ++ SG L+ I+NDLLD SKI +G + L +P + + ++EKR+ Sbjct: 254 TLNHSGELLRAIINDLLDYSKINAGMLELIEKPFDCHLLAVKLEDIFTHRSHEKRLDFNI 313 Query: 689 SFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 +++++P++ + D +KQI +N++SNAI FTP+G + + N+++ V+D+G G Sbjct: 314 YYSHDLPKVFIGDEDRIKQIFVNLISNAIKFTPAG--FVHAKLWWHNKQLQFTVKDSGCG 371 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + + K KPF Q+ + + EGTGLGL + K + + G + S+ +G + Sbjct: 372 IDHSDQHKLFKPFSQVDITSKRSHEGTGLGLVICKQLCEQMGGSIRVESSLGRGACFNVS 431 Query: 808 FPLYDTSHPH 817 PL + H H Sbjct: 432 LPLPISDHTH 441 >gi|325916867|ref|ZP_08179115.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC 35937] gi|325536912|gb|EGD08660.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC 35937] Length = 636 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 134/220 (60%), Gaps = 6/220 (2%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE + K++FL+R SHE+RTPL AI+G+++V++ L P + + +I +G + Sbjct: 269 AETANRAKTEFLSRSSHELRTPLNAILGYAQVLEMD----LPEPGHRRHLQHILGAGRHL 324 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ +LLDI++IE+ +++L EPV +D AV EA++L+ A + I ++ + Sbjct: 325 LGLITELLDIARIEADQLDLSPEPVPVDAAVHEALALIAPDAEKHGIHLQPPAIEGAWTV 384 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 AD + ++Q+ LN+LSNA+ F GG + +S E+V + V D G G+T ++++ Sbjct: 385 RADAQRLRQVLLNLLSNAVKFNRPGGNVQVS-AQADGEQVRITVADQGQGLTPPQIQRLF 443 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 PF ++ +++ EGTGLGL L+K +++A G+ + S+ Sbjct: 444 TPFERL-GAERSAVEGTGLGLALSKKLIEAMGGQIGVDSS 482 >gi|220909068|ref|YP_002484379.1| histidine kinase [Cyanothece sp. PCC 7425] gi|219865679|gb|ACL46018.1| histidine kinase [Cyanothece sp. PCC 7425] Length = 998 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 83/264 (31%), Positives = 136/264 (51%), Gaps = 9/264 (3%) Query: 550 FSSCYSLTMHDISEWKQE----KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 S Y+ + E QE L A+ AE + KS FLA +SHE+RTPL A+IG Sbjct: 465 LSDSYAHLEQRVKERTQELEASNQALDLARDAAEAANKAKSTFLANMSHELRTPLNAVIG 524 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 +S+++ L Y+ I+ +G +L+++N +LD+SKIE+GKM L+ E +++ Sbjct: 525 YSDMLMED----LEESDYLPDLQKINSAGKHLLELINAVLDLSKIEAGKMELYLEEFNIN 580 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 E V +LV+ ++ + + ++ AD V+Q LN+LSNA FT + G + Sbjct: 581 ELVQGVAALVKPLMDKNHNRFALQIPDTLGKMTADATKVRQSLLNLLSNASKFTKA-GTV 639 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 ++ + V ++ DTG+GM+ +L+K + F Q NS GTGLGL +++ Sbjct: 640 TLNVWIDDTQRVFFQISDTGIGMSPEQLDKLFQEFTQADNSTTRNYGGTGLGLAISRRFC 699 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 G + S P G++ I P Sbjct: 700 RMMGGDITVTSEPGVGSVFTIELP 723 >gi|297617002|ref|YP_003702161.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophothermus lipocalidus DSM 12680] gi|297144839|gb|ADI01596.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophothermus lipocalidus DSM 12680] Length = 352 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 94/359 (26%), Positives = 174/359 (48%), Gaps = 41/359 (11%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 ++ +IL DG+ ++R+GI+ N+A ++F E ++ +PF + +N Sbjct: 17 KMKAILTTLVDGVMAVSRDGIVTLANKAAEEIFKARHEGLVGRPFASLVSSQE---LNQM 73 Query: 513 LTEILSLD--------LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 L ++ L Q L ++ + + EK + HD+++ Sbjct: 74 LEDVFETGRQIFTETALEQCLFRVQMAAINGEK-----------GDVEGAVVVFHDVTD- 121 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 A K +S+F+A VSHE+RTPLTAI GF E + + G L + Sbjct: 122 -------------ARKFDQMRSEFVANVSHELRTPLTAIKGFVETLLD---GALEDKLIC 165 Query: 625 E-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + I+ N + +++DLL +S IES + L +PV L ++ + ++++ A EKR Sbjct: 166 RRFLTIIEGENNRLTRLIDDLLTLSAIESRERKLTLKPVCLVTSIIQVMNILGPQAREKR 225 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + + F ++P + AD V Q+ +N++ NAI +T GG+I+I ++V + D Sbjct: 226 LHLELIFNRDLPPVKADEDLVGQVLINLIDNAIKYTSPGGKIVIRVKR-GGDQVFTSITD 284 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TG G+ L + + F ++ ++ GTGLGL + K +V+++ G+ ++ S KG+ Sbjct: 285 TGTGIPQESLPRLFERFYRVDKARSRELGGTGLGLAIVKHIVESHGGEVFVESELGKGS 343 >gi|149191684|ref|ZP_01869926.1| putative histidine kinase [Vibrio shilonii AK1] gi|148834473|gb|EDL51468.1| putative histidine kinase [Vibrio shilonii AK1] Length = 1039 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 81/243 (33%), Positives = 128/243 (52%), Gaps = 12/243 (4%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + KN HAK+ A + S KS FLA +SHEIRTPL +IG SEV+ + + Sbjct: 363 EAKNAAEHAKENAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLSDTDLTATQK----D 418 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y + I+ S L+L ++ND+LD SKIESG + ++ S+ E + + S+V EK I Sbjct: 419 YVDTIETSSQLLLSLINDILDFSKIESGMLQINPHSTSIRETIYDIASIVAPKVKEKGIE 478 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EVIL 739 + N+P R+LAD ++Q+ +N +SNA+ FT G I H E ++ Sbjct: 479 LNVDIDQNVPFRVLADDHRMRQVLMNFMSNAVKFTDKGSVTI--GVHYQGESNNMASLMF 536 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V+D+G+G+ K + F Q +S + GTGLGL ++ +++ G+ + S Sbjct: 537 EVQDSGIGIDKERQSKIFEAFAQEDDSTTRQFGGTGLGLAISTQLIELMGGEIQLDSVKG 596 Query: 800 KGT 802 G+ Sbjct: 597 VGS 599 >gi|66045353|ref|YP_235194.1| PAS [Pseudomonas syringae pv. syringae B728a] gi|63256060|gb|AAY37156.1| PAS [Pseudomonas syringae pv. syringae B728a] Length = 1206 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 107/366 (29%), Positives = 185/366 (50%), Gaps = 25/366 (6%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL-- 513 +++E T I + +REG++ N + ++F EDI+ K T + N + Sbjct: 583 ALVEGTPHPIYVRDREGMLRMCNDSYLRVFSAQREDIIGKSATEGVLGNAFEAREYAADY 642 Query: 514 TEILSLDLRQTLEK-ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH------DISEWKQ 566 +++ + L++ + +G + L I LPF DISE +Q Sbjct: 643 QRVMASNTALILDRPLRIGDRQ------LTIYHWILPFRDSLGEVQGIIGGWIDISERRQ 696 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPLGNPRYIE 625 L AK+ A+ S KS FLA +SHEIRTP+ A+IG E+ +K G L + IE Sbjct: 697 LIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHGEL-DRSAIE 755 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A S N +LD++ D+LDI++IESG+++L+ E +L V + + A +K + Sbjct: 756 VAY---SSANDLLDLIGDILDIARIESGRLSLNPERANLRRLVEAVLRVFDGLARQKDLE 812 Query: 686 IRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI---LR 740 + + I +L D KQI N++SNAI FTP G ++++ + + +++ + Sbjct: 813 LVLELDSRINADVLIDPLRFKQILSNLVSNAIKFTPMGRIKVVLLAAESPDPQLLHLHIT 872 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+D+G+G++ + ++ +PF Q N+ Q+ G GLGL + +++ G + STP Sbjct: 873 VQDSGIGISVEDQQRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMMGGNLSLDSTPGH 932 Query: 801 GTLIEI 806 GT I + Sbjct: 933 GTRISM 938 >gi|309790274|ref|ZP_07684842.1| integral membrane sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308227662|gb|EFO81322.1| integral membrane sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 908 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 86/246 (34%), Positives = 130/246 (52%), Gaps = 10/246 (4%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK +AE S KS FLA +SHE+RTPL AIIG+SE++++ + + I Sbjct: 519 LEQAKHLAEGASRAKSAFLANMSHELRTPLNAIIGYSEMLQDD-LSESDHTALVPDIQKI 577 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA--NEKRILIRT 688 +G +L ++ND+LDISKIE+GKM LH E SL V I+ V A N R+++ Sbjct: 578 HHAGRHLLGLINDILDISKIEAGKMELHPEQFSLVSLVENVINTVDPLAASNHNRLVLEC 637 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHTSNEEVILRVRD 743 A ++ + ADL ++QI +N+LSNA FT G Q + S T + V+ + D Sbjct: 638 --AADLGMMAADLAKLRQILVNLLSNACKFTQHGQVTLRVQRLRSETDPQSGTVVFEIAD 695 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+GM+ ++ + +PF Q S + G+GLGL ++ G + S G+ Sbjct: 696 TGIGMSEEQIARIFQPFSQADTSMTRKYGGSGLGLAISHHFCQMMGGTIRVQSELGVGST 755 Query: 804 IEIIFP 809 + P Sbjct: 756 FIVTLP 761 >gi|302879767|ref|YP_003848331.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302582556|gb|ADL56567.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 1233 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 83/251 (33%), Positives = 133/251 (52%), Gaps = 9/251 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ ++ + L AK+ AE S K DFLA +SHEIRTP+ IIG +E+ + Sbjct: 575 TNADITARREAEAALRQAKEAAEAASRAKGDFLANMSHEIRTPMNGIIGMTELALDTEL- 633 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 N EY + S + +L I+ND+LD SKIESGK+++ SL+ + E + + Sbjct: 634 ---NSEQREYLGLVQSSADALLTILNDILDFSKIESGKLDIENIEFSLEHMLRETMKSLA 690 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A++K++ + A ++P R+L D ++Q+ +N++ NAI FT SG + Sbjct: 691 VRAHQKQLELLLHVAPDVPDRLLGDPGRLRQVIVNLVGNAIKFTASGEIEVDVQCLKGAP 750 Query: 736 EVILR----VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 E +R VRDTG+G+ + + + F Q S R GTGLGL ++ +V G Sbjct: 751 EGQMRMQFSVRDTGIGIARDKFQTIFESFSQADTSTTRRYGGTGLGLTISAQLVSLMGGS 810 Query: 792 FYIFSTPAKGT 802 + S +G+ Sbjct: 811 IALESEVGQGS 821 >gi|158121175|gb|ABW17001.1| two-component sensor histidine kinase [Bacillus subtilis] Length = 579 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 99/366 (27%), Positives = 184/366 (50%), Gaps = 27/366 (7%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 R E++ +L +++E G+ +I+ G I NR+ +K F +LR+ + E Sbjct: 227 RTQEMQRDRLLTVIENIGSGLIMIDGRGFINLVNRSYAKQFHINPNHMLRRLYHDAFEHE 286 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 ++ Q +E I + TK+ KLL L I I++ F M EW Sbjct: 287 ---------------EVIQLVEDIFMTETKKCKLLRLPIKIERRYFEVDGVPIMGPDDEW 331 Query: 565 KQEK---NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 K + ++ KK+ + + DF+A VSHE++TP+T+I GF+E + + G + + Sbjct: 332 KGIVLVFHDMTETKKLEQ----MRKDFVANVSHELKTPITSIKGFTETLLD---GAMEDK 384 Query: 622 RYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + E+ + I + + +V DLLD+SKIE L E + + E +L++ A+ Sbjct: 385 EALSEFLSIILKESERLQSLVQDLLDLSKIEQQNFTLSIETFDPAKMLGEIETLLKHKAD 444 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 EK I ++ + + + D +KQ+ LN+++NA+ +TP GG + I+ ++ + Sbjct: 445 EKGISLQLNVPKDPQYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAIN-VKPRERDIQIE 503 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D+G+G+ E+ + + F ++ + GTGLGL + K +++A+ GK + S P + Sbjct: 504 VADSGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTSEPGR 563 Query: 801 GTLIEI 806 GT+ + Sbjct: 564 GTVFTV 569 >gi|126658537|ref|ZP_01729684.1| serine/threonine kinase with two-component sensor domain [Cyanothece sp. CCY0110] gi|126620124|gb|EAZ90846.1| serine/threonine kinase with two-component sensor domain [Cyanothece sp. CCY0110] Length = 3557 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 100/384 (26%), Positives = 188/384 (48%), Gaps = 30/384 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++ E ++ G+ + +G ++ N A + + G VE+ L + + L E Sbjct: 2957 TLFETSTIGLVLCRMDGTLVDVNPAYAAILGRTVEETLNLTYWEITPETYAEAEAAQL-E 3015 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ------EKN 569 ++ R EK + ++L +I + + DIS+ KQ E N Sbjct: 3016 SMAKTGRYAFEKEYIRKDGSLVPVALSGLIVERNGEQYIWSCVEDISQRKQAEVALKEAN 3075 Query: 570 ------------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 +L AK++AE+ + KS FLA +SHE+RTPL I+G++++++ P Sbjct: 3076 NQLEQRVLERTAQLQQAKELAEEANQAKSAFLANMSHELRTPLNGIMGYAQILQR---SP 3132 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + + I + G+ +L ++ D+LDISKIE+G+M L+ + L+ + + + ++ Sbjct: 3133 QLSSDHKSNIQVIYQCGSHLLTLIEDILDISKIEAGRMELYCQEFPLNSFLQGVVEICRI 3192 Query: 678 YANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--- 733 A +K + +++P ++ D + ++Q+ LN+L NAI FT S G I + TS Sbjct: 3193 KAEQKSLTFTYERPSSLPTVINTDQKRLRQVLLNLLGNAIKFT-SLGSIKFRVSFTSSRT 3251 Query: 734 --NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 N + + DTGVG++ +L++ PF Q+ + Q + EGTGLGL +++ ++ + Sbjct: 3252 NHNGFLQFEIEDTGVGISAEQLDRIFLPFEQVGSLSQ-KAEGTGLGLAISQKLLQMMGTQ 3310 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSH 815 + ST G++ I P+ S Sbjct: 3311 LTVESTLGVGSIFSFILPIASWSQ 3334 >gi|119486633|ref|ZP_01620683.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] gi|119456250|gb|EAW37382.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] Length = 536 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 89/275 (32%), Positives = 147/275 (53%), Gaps = 25/275 (9%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + ++E+ +E L AK +AE + KS FLA +SHE+RTPL AIIG+SE++ ++ Sbjct: 263 IQRVAEYTEE---LEKAKVLAESANRSKSVFLANMSHELRTPLNAIIGYSEMLHDEA-DD 318 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD-EAVSEAISLVQ 676 LG ++ I +G + D+++D+LDISKIE+G + L+ E S++ + + + I+ + Sbjct: 319 LGCHDFLPDLEKIQTAGRHLRDMISDILDISKIEAGHVTLYLEDFSVEKQLLKDVITTTK 378 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII--------- 727 A + R ++ N I ++ ADL V+QI LN+LSNA FT G I+ Sbjct: 379 PLAEKNRNTVKIEIKNEIGQMYADLPKVRQILLNLLSNACKFTQDGVITIVVKRVKSKPS 438 Query: 728 STTHT-----------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 ST T + +I +V DTG+GM++ + + K F Q S R GTGL Sbjct: 439 STRRTLSSGSRFGGNQMQQYLIFKVIDTGIGMSDEQQKLIFKAFTQADASTTKRFGGTGL 498 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 GL +++ + + G + S KG+ + P++ Sbjct: 499 GLAISQRLCEILGGGITVESQEGKGSTFIVWLPVH 533 >gi|116623382|ref|YP_825538.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116226544|gb|ABJ85253.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 796 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 80/265 (30%), Positives = 139/265 (52%), Gaps = 9/265 (3%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG----- 616 +E +Q ++L + AE + KS FLA +SHE+RTP+ AIIG+SE++ ++ Sbjct: 269 AELEQRHHELQLLMEAAESANQAKSQFLANMSHELRTPMNAIIGYSEMLMDEAQDMASAS 328 Query: 617 --PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P ++ I +G +L ++ND+LD+SKIE+GKM+L+ E + E V++ Sbjct: 329 ALPEVEAVFVPELKKITAAGRHLLALINDILDLSKIEAGKMDLYLETFQIPEMVNDVACT 388 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--T 732 +Q ++ ++ + I + ADL V+Q+ N+LSNA FT G + H Sbjct: 389 IQPLVDKNANRLQIDISPGIGPMRADLTKVRQVLFNLLSNASKFTDKGVIELRVFNHHDE 448 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + + + +V+D+G+GMT + + + F Q S + GTGLGL + + + G+ Sbjct: 449 ARDWIAFQVKDSGIGMTREQAARIFEAFTQADASTTRKYGGTGLGLTITRKFCELMGGRI 508 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHPH 817 + S P +GT+ + PL + H Sbjct: 509 TVDSEPGQGTVFTVRLPLEVAADAH 533 >gi|197118872|ref|YP_002139299.1| sensor histidine kinase response receiver domain-containing protein [Geobacter bemidjiensis Bem] gi|197088232|gb|ACH39503.1| sensor histidine kinase response receiver domain protein, HAMP domain-containing protein [Geobacter bemidjiensis Bem] Length = 1362 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 130/260 (50%), Gaps = 11/260 (4%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H E + L K+ E+ + KS+FL+ +SHE+RTPL +++ S V+ Q Sbjct: 560 HQSEELSRHNQVLDLQKQQLEEATRLKSEFLSNMSHELRTPLNSVLALSRVLAVQ----- 614 Query: 619 GNPRYIE----YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 G R E Y + I+R+G +L ++ND+LD++KIESG+ ++ E VSL + +E + Sbjct: 615 GGSRLTEDEKGYLSIIERNGKHLLSLINDILDLAKIESGRQEVYLETVSLQKVTAEVVDG 674 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 + + A EK I I +P + D++ ++Q+ N++ NA+ FT G + Sbjct: 675 LSVLAREKGIAISLEAPEALPTAVIDVKRLRQMLQNLIGNAVKFTAEGA--VTVRLGAEG 732 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 EE ++ V DTG+G+ LE F Q S EGTGLGL + K G + Sbjct: 733 EEFLVEVEDTGIGIAPQYLETIFHEFRQADGSTSRSFEGTGLGLAIVKKTARLLGGDVSV 792 Query: 795 FSTPAKGTLIEIIFPLYDTS 814 S KG++ + P T Sbjct: 793 RSELGKGSVFTLRLPCDGTG 812 >gi|311031362|ref|ZP_07709452.1| Signal transduction histidine kinase [Bacillus sp. m3-13] Length = 589 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 105/402 (26%), Positives = 194/402 (48%), Gaps = 52/402 (12%) Query: 420 KANQFPENMPQNGIEPEDVDTRINK-----RKMEIEVMQLCSILEATSDGIAIINREGII 474 KA F E++ + G+ + ++ + E++ +L +++E+ G+ +I+ G + Sbjct: 207 KARTFEEHVDETGMLSQSINILARNLQDMTKAQEMQQDRLRTLIESMGSGLILIDGRGYV 266 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 NRA + F + L + + +EQ M +E+I + Sbjct: 267 NLINRAYKETFDADPGEYLYRLYYEAIEQKEVVTM---------------IEEIFMTEVS 311 Query: 535 EEKLLSLRIIIKKLPFS-------------SCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 K + L + I++ F L HDI+E K KL +K Sbjct: 312 VRKQILLPLTIERRHFEVYGAPIIGVNDEWKGIVLVFHDITELK----KLEQMRK----- 362 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY-ANYIDRSGNLVLDI 640 DF+A VSHE++TP+T+I GFSE + + G + + +EY + I + + + + Sbjct: 363 -----DFVANVSHELKTPITSIKGFSETLLD---GAMNDKDTLEYFLSIILKESDRLQSL 414 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700 + DLLD+SKIE L+ + + ++E + E +++ A EK I + S + AD Sbjct: 415 IEDLLDLSKIEKQGFRLNPQYLEINELLEEIFVILEGKAREKEIDLVLSKPKKELYLFAD 474 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 +KQ+ +N+++NAI +TP+GG++ + ++EV++ V DTG+GM E+ + + F Sbjct: 475 ASRIKQVFINLINNAIAYTPAGGEVKVKVEEV-DKEVVIVVSDTGIGMEQDEIPRIFERF 533 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 ++ ++ GTGLGL + K +V+A+ G + S KGT Sbjct: 534 YRVDKARSRNSGGTGLGLAIVKHIVEAHHGSISVTSELNKGT 575 >gi|262404023|ref|ZP_06080578.1| hypothetical protein VOA_002011 [Vibrio sp. RC586] gi|262349055|gb|EEY98193.1| hypothetical protein VOA_002011 [Vibrio sp. RC586] Length = 1323 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 103/378 (27%), Positives = 188/378 (49%), Gaps = 24/378 (6%) Query: 441 RINKRKMEIEVMQLCS-ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFT 498 R+ +RK+ +E QL IL+AT + + ++ G L+ N ++ G +++ ++P Sbjct: 461 RLAERKV-LEQSQLNQEILDATPNPMYCLSANGTFLTVNAQFLEMVGLESNEVIGKQPQE 519 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS------- 551 +F P + + +L +Q + S + K + +++ + F Sbjct: 520 IF-----PDCVADCFAQAHTLLTQQQSSQNYEISMTDHKGIQHEMLVYEASFGDRADKVN 574 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 L + D++E K + +L AK A+ S K DFLA +SHEIRTP+ AI+G + + Sbjct: 575 GIVGLLL-DLTERKVMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLAL 633 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 N + + +Y I+ S +L I+N++LD SKIE+GK+N+ +LD+ + Sbjct: 634 NTKL----DTTQRKYVTRINESAKNLLGIINEILDFSKIEAGKLNVERIDFNLDDVLDNV 689 Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 +++ L A EK I +IP ++ D + Q+ +N+ NA+ FT G +I + Sbjct: 690 TAVISLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVIVNLCGNAVKFTHQGEIVITARV 749 Query: 731 HTSNEEVI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 N++ + V+DTG+G+ +L F Q +S + GTGLGL ++K +V+ Sbjct: 750 SQLNDQYVTLGFAVKDTGIGIAKEKLTDLFNAFSQADSSITRQYGGTGLGLSISKQLVEL 809 Query: 788 NMGKFYIFSTPAKGTLIE 805 G+ + ST +G++ E Sbjct: 810 MGGQISVRSTEGEGSIFE 827 >gi|311696550|gb|ADP99423.1| integral membrane sensor hybrid histidine kinase [marine bacterium HP15] Length = 1127 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 140/253 (55%), Gaps = 9/253 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L M +I ++ L AK+ AE + KS +L +SHE+R+PL AI+G++++++N Sbjct: 645 LLMEEIVAHERTDQALQQAKEQAEAANGAKSRYLTGISHELRSPLNAILGYAQLMENDET 704 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P E I RSG + D++ LLDISKIE+G+++LH + V + + + +++ Sbjct: 705 IP---SHRKEALGVIRRSGEYLADLIEGLLDISKIEAGRLDLHRDQVRIGLLMEQLVTMF 761 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 +L A +K + N +P ++ D + ++QI +N+LSNAI +T GG +S T Sbjct: 762 RLQAEDKGLAFDYHCPNPLPEMVTTDEKRLRQILINLLSNAIKYTDRGG---VSLTLRYR 818 Query: 735 EEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +V VRDTG G+ +E+ +PF +I Q R GTGLGL + + + + G Sbjct: 819 SQVAEFTVRDTGEGIAPENVERIFRPFERIRTPGQSRA-GTGLGLTITRLLTEIMGGDIS 877 Query: 794 IFSTPAKGTLIEI 806 + S P +G++ + Sbjct: 878 LESVPGQGSVFRV 890 >gi|288941471|ref|YP_003443711.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288896843|gb|ADC62679.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 904 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 83/264 (31%), Positives = 143/264 (54%), Gaps = 10/264 (3%) Query: 555 SLTMHDISE-WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 +LT + ++E K + +++ A + ++ KS F++ SHE+RTPL AI G+ ++I+ Sbjct: 474 ALTFNQMAEDLKNKIDEIETANQELQQLDQLKSKFISMASHELRTPLIAIQGYVDLIREG 533 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 R G + + + + R+ + IV++LLDIS+IE K+ L PVSL + VSE Sbjct: 534 RGGEISAAQRT-MLDTVSRNATRLARIVSELLDISRIEENKLVLERVPVSLGQIVSEITE 592 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 Q Y +R + A+ +PR+ D + Q+ +N+L NAI +TP GG+I I + Sbjct: 593 EQQPYLESRRHALTLEIADALPRVDGDPDRISQVVINLLGNAIKYTPDGGRIHIR-VYPE 651 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-------GEGTGLGLPLAKAMVD 786 + V L V DTG+G+ ++ K K F + + + R GTGLGL + + +V Sbjct: 652 PDRVHLEVTDTGIGIKPEDIGKLFKRFSTLGDVTKHRTGKNEFLAGGTGLGLSIVQGIVQ 711 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPL 810 A+ GK ++ S +G+ + +P+ Sbjct: 712 AHAGKIWVDSEYGRGSTFHVQWPI 735 >gi|188991208|ref|YP_001903218.1| Two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas campestris pv. campestris str. B100] gi|167732968|emb|CAP51164.1| Two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas campestris pv. campestris] Length = 1364 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 106/395 (26%), Positives = 182/395 (46%), Gaps = 32/395 (8%) Query: 447 MEIEVMQLCSILEATSDGIAII--NREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQ 503 ++ V+Q + A G AII + G + N A KL GY +D++ R+ + F+E Sbjct: 489 VQFSVLQRAILAHA---GYAIIATDSNGFVTMFNPAAEKLLGYSADDVIGRRKASQFIEA 545 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKI----TLGSTKEEKLLSLRIIIKKLP----FSSC-- 553 + L E + TLE + +LG + + + ++LP S+ Sbjct: 546 DELQERALRLAEQTGTPVAGTLEAVAALTSLGRSDTSEWTYVSQDGRRLPVLLTLSTLRD 605 Query: 554 -------YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 Y D++E K + +L A A + KSDFLA +SHEIRTP+ AI+G Sbjct: 606 DNDQVIGYLGVAVDLTEQKLHEKQLRLAMDAARSANQSKSDFLANMSHEIRTPMNAILGM 665 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 +++ + IDRS +L+I+ND+LD SKIE+G+++L P L++ Sbjct: 666 LYLLQRSELPGAAQ----DMVTKIDRSARSLLEIINDILDFSKIEAGRIDLERAPFDLNQ 721 Query: 667 AVSEAISLVQLYANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 L++ + K + +I +L D + Q+ +N++ NAI FT G + Sbjct: 722 LFDNIADLMRSSLSAKPVEMIVEPLPRECRWLLGDALRINQVLVNLVGNAIKFTEQGEVV 781 Query: 726 IISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 + S + +++ VRDTG+G++ + PF Q S R G+GLGL ++ Sbjct: 782 LSVRRFPSGDPNKIKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTIS 841 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + +++ G + S P +G+ + L T P Sbjct: 842 RRLIELMGGALEVESVPGRGSEFYFVITLERTDPP 876 >gi|148359459|ref|YP_001250666.1| sensory box histidine kinase/response regulator [Legionella pneumophila str. Corby] gi|148281232|gb|ABQ55320.1| sensory box histidine kinase/response regulator [Legionella pneumophila str. Corby] Length = 910 Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 136/245 (55%), Gaps = 9/245 (3%) Query: 563 EWKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E +EKN +LS KK E++S KS+F+A +SHEIRTP+ +IGF+ V+ + PL Sbjct: 275 ELLEEKNIELSLEKKKTEEKSRQKSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL--- 331 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 ++Y I S +L I+ND+LD SKI++GK+NL P+ + + E +SL A++ Sbjct: 332 -QLDYVKTIKSSAQDLLSIINDILDFSKIDAGKLNLDCIPLDIRGCIDEVLSLASPNAHK 390 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---V 737 K I + N+P+ +L D +KQI N+++NA+ FT G +I + ++ + Sbjct: 391 KGIDLIPITDINVPKMVLGDPLRIKQIISNLVTNAVKFTDHGYVLIRTKIEQETDKDYTL 450 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + + DTG+G++ + K F Q S R G+GLGL + K + + G+ + S Sbjct: 451 LFTITDTGIGISPEDQTKLFTAFNQADTSITRRYGGSGLGLVICKKLCEEMHGRISLTSE 510 Query: 798 PAKGT 802 KG+ Sbjct: 511 INKGS 515 >gi|297568082|ref|YP_003689426.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296923997|gb|ADH84807.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 661 Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 105/378 (27%), Positives = 185/378 (48%), Gaps = 32/378 (8%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L +IL++ G+ +++G + N +L G+ + D L +P L ++++ Sbjct: 34 RLSAILQSIGAGVIATDQQGRVAFLNPVAERLTGWDLVDALNRPVMEVL-----NLVDEA 88 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLR------IIIKKLPFSS------CYSLTMHD 560 L+ L++ E + E +L R + P +S C + Sbjct: 89 SGRPLTAPLQRVQEDGEIIDCSGELVLRSRQGKNYPVSCTVAPIASFSGIIGCVFVFRDT 148 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I E + ++N LS AK+ AE+ S KS+FLA +SHEIRTPLT I+G ++++ PLG Sbjct: 149 IREREIQRNLLS-AKEEAERASQAKSEFLASMSHEIRTPLTTILGMADLLDKT---PLGA 204 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + +Y +G +LD++N +LD+SKIE+GK+ + LD + + ++ L A+ Sbjct: 205 EQR-QYVWASRAAGENLLDLINGILDLSKIEAGKLEIEVMEFDLDHLLRQTCEIMALRAH 263 Query: 681 EKRI--LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +K + R S+ + +L D ++QI +N++ NAI FT G++ + EE Sbjct: 264 QKGLEFTCRLSWQGSCL-VLGDATRIRQILVNLIGNAIKFTER-GKVTVEAVRWPAEESA 321 Query: 739 ------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 V DTG+G+ + E + F Q+ +S R GTGLGL +++ +V G Sbjct: 322 ENTWFGFVVSDTGIGIPPDKQEMVFEDFAQVDSSTSRRYGGTGLGLAISRKLVQMMGGTI 381 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S +G+ + PL Sbjct: 382 RLASREGEGSRFTVEIPL 399 >gi|58582420|ref|YP_201436.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427014|gb|AAW76051.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 1402 Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 101/380 (26%), Positives = 180/380 (47%), Gaps = 29/380 (7%) Query: 464 GIAII--NREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLD 520 G AII + G + N A K+ GY +++ R+ + F+EQ+ L + Sbjct: 541 GYAIIATDSSGFVTLFNPAAEKMLGYNAAEVIGRRKASQFIEQDELQERARMLADQTGTP 600 Query: 521 LRQTLEKI----TLGSTKEEKLLSLRIIIKKLP----FSSC---------YSLTMHDISE 563 + TLE I +LG + + + ++LP S+ Y D++E Sbjct: 601 VAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAVDLTE 660 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K + +L A A+ + KSDFLA +SHEIRTP+ AI+G +++ Sbjct: 661 QKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQ--- 717 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + IDRS +L+I+ND+LD SKIE+G+++L P L++ L++ + K Sbjct: 718 -DMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLSAKP 776 Query: 684 I-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVI 738 + +I + +L D + Q+ +N++ NAI FT G ++ S + +++ Sbjct: 777 VEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKFKLL 836 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 VRDTG+G++ + PF Q S R G+GLGL +++ +++ G+ + S P Sbjct: 837 FSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEVESVP 896 Query: 799 AKGTLIEIIFPLYDTSHPHD 818 +G+ + L ++ P + Sbjct: 897 GRGSEFYFVITLEKSAPPQE 916 >gi|312887983|ref|ZP_07747567.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311299464|gb|EFQ76549.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 733 Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 82/267 (30%), Positives = 148/267 (55%), Gaps = 11/267 (4%) Query: 550 FSSCYSLTMHDISEWKQEKN---KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 F S L + +++Q+ KL ++K + K +FLA +SHEIRTPL +I+GF Sbjct: 201 FISGGVLCWFILGQFRQQNKLILKLDASEKRLTEALQIKENFLANMSHEIRTPLNSILGF 260 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 + +++ + +P E+ I ++G ++ I+ND+LD+SKIE+G M + P S+ Sbjct: 261 TNLLQRRD----KDPDSAEFIESIQKAGENLMAIINDILDLSKIEAGMMRIVKAPFSVRG 316 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-Q 724 + +L + NEK + + S A+N+P ++ D + QI +N++ NA+ F+ G + Sbjct: 317 LIHSIETLFKERVNEKGLQLNCSVASNVPDTLIGDATRLTQILVNLIGNALKFSDGGMIE 376 Query: 725 IIISTTHT--SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 +++S SN ++ ++V+DTG+G++N +L+K + F Q +S GTGLGL + K Sbjct: 377 VLVSRVWADGSNIQLGVKVKDTGIGISNEKLDKIFERFNQAEDSITRNYGGTGLGLSIVK 436 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 +++ G + S P KG+ P Sbjct: 437 TLIELQGGNIEVHSIPGKGSEFAFYIP 463 >gi|220909141|ref|YP_002484452.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865752|gb|ACL46091.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 934 Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 107/366 (29%), Positives = 172/366 (46%), Gaps = 29/366 (7%) Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFT---------VFLEQNTPSVMNHYLTEIL 517 I+++ I+ N +LF +P +D + K FL+ N P + + E + Sbjct: 437 IVDQASRIVYLNPTYFRLFNFPAQDAIGKTVAELYPPQFAEQFLQNNRPVFTHQEVVETI 496 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ---EKNKL--- 571 R T GST E L + I + P DI+E KQ E+ +L Sbjct: 497 ETAPR------TDGSTGE--FLVYKFPIPQEPDELLLGGVALDITERKQAEAERERLLQR 548 Query: 572 -SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 A++ AE + K +FLA +SHE+R+PL I+G++++++ + F P + + I Sbjct: 549 EQEAREQAESANRIKDEFLAVLSHELRSPLNPILGWAKLLQTRPFAP---EKAQQALQTI 605 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 +R+ L ++ DLLD+S+I GKM L+ PV L + A+ VQL A K I + Sbjct: 606 ERNAKLQAQLIEDLLDVSRILRGKMVLNVCPVDLVTVIEAALETVQLSAEAKGIQLERHL 665 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 AN+I I D ++QI N+LSNAI F+P G ++ I E ++VRDTG G+ Sbjct: 666 ANDIGFISGDAGRLQQIVWNLLSNAIKFSPPGHRVDIRLERV-GAEAQMQVRDTGKGINP 724 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809 L + F Q + + G GLGL + + + + + G S +G ++ P Sbjct: 725 SFLPHVFEYFRQEDSRTTRKFGGLGLGLAIVRYLTELHGGTVQAESGGEGQGATFKVRLP 784 Query: 810 LYDTSH 815 L H Sbjct: 785 LLKVGH 790 >gi|307610618|emb|CBX00206.1| Legionella transmission sensor LetS [Legionella pneumophila 130b] Length = 909 Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 136/245 (55%), Gaps = 9/245 (3%) Query: 563 EWKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E +EKN +LS KK E++S KS+F+A +SHEIRTP+ +IGF+ V+ + PL Sbjct: 274 ELLEEKNIELSLEKKKTEEKSRQKSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL--- 330 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 ++Y I S +L I+ND+LD SKI++GK+NL P+ + + E +SL A++ Sbjct: 331 -QLDYVKTIKSSAQDLLSIINDILDFSKIDAGKLNLDCIPLDVRGCIDEVLSLASPNAHK 389 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---V 737 K I + N+P+ +L D +KQI N+++NA+ FT G +I + ++ + Sbjct: 390 KGIDLIPITDINVPKMVLGDPLRIKQIISNLVTNAVKFTDHGYVLIRTKIEQETDKDYTL 449 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + + DTG+G++ + K F Q S R G+GLGL + K + + G+ + S Sbjct: 450 LFAITDTGIGISPEDQTKLFTAFNQADTSITRRYGGSGLGLVICKKLCEEMHGRISLTSE 509 Query: 798 PAKGT 802 KG+ Sbjct: 510 INKGS 514 >gi|298291978|ref|YP_003693917.1| PAS/PAC sensor hybrid histidine kinase [Starkeya novella DSM 506] gi|296928489|gb|ADH89298.1| PAS/PAC sensor hybrid histidine kinase [Starkeya novella DSM 506] Length = 786 Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 88/265 (33%), Positives = 141/265 (53%), Gaps = 8/265 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS+ + + +L AK+ AE S KS FLA +SHE+RTPL AIIG+SE++ ++ G Sbjct: 247 DISDRVRAEQQLREAKEAAESASRVKSAFLANMSHELRTPLNAIIGYSEIL-SEDAADDG 305 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV--QL 677 N + + I +G +L ++ND+LD+SKIE+G+M+++ E V L V E ++V + Sbjct: 306 NTAMVADLDKIQSAGKHLLGLINDILDLSKIEAGRMDVYLEQVFLTRMVDEVKTIVGPMM 365 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEE 736 N ++++ +I + DL +KQ +N+LSNA FT G + IS + Sbjct: 366 QKNANQLVVECPV--DIGTLRTDLTKLKQSLINLLSNAAKFTKEGTVTLRISRDAMPDGS 423 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +R V D+G+GMT ++ + + F Q +S GTGLGL + K V G + Sbjct: 424 SAIRFDVSDSGIGMTEEQMGRLFQAFTQADSSTTRNFGGTGLGLTITKHFVAMLGGTIAV 483 Query: 795 FSTPAKGTLIEIIFPLYDTSHPHDC 819 S +G+ I P+ P + Sbjct: 484 ASEAGRGSTFTIELPVDAKGLPAEA 508 >gi|294828133|ref|NP_712722.2| histidine kinase/response regulator hybrid protein [Leptospira interrogans serovar Lai str. 56601] gi|293385980|gb|AAN49740.2| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Lai str. 56601] Length = 1017 Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 89/264 (33%), Positives = 153/264 (57%), Gaps = 12/264 (4%) Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II +K F S + H+I+E K ++ L AK+IAE S K+DFLA +SHEIRTPL Sbjct: 467 IIHQKRVFLSVW----HEITERKVYEDSLKRAKEIAEAASKAKTDFLAMMSHEIRTPLNG 522 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 +IG +++ G N EY + I SG +L ++ND+LD+S+IESG++ L +PV Sbjct: 523 VIGTVSLLE----GTFLNTEQKEYLDIIKSSGQNLLILLNDILDLSRIESGQLKLEIQPV 578 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721 S ++ +E ++L + A EK +++ + + N+P I++D ++Q+ N++ N+I FT Sbjct: 579 SPEKLTNEVVNLFRPMAEEKGLVVESEVSFNVPNWIISDPYRLRQVLTNLIGNSIKFTEK 638 Query: 722 GG-QIIISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 G + + N++ +I V+DTG+G+ +LE + F Q+ +S + G+GLGL Sbjct: 639 GKIHLSVEAEKFPNDKLRLIFHVKDTGIGIAEEKLELLFRAFSQVDSSTTRKYGGSGLGL 698 Query: 779 PLAKAMVDANMGKFYIFSTPAKGT 802 ++K + + G+ + S G+ Sbjct: 699 TISKKLAELMKGEITVKSQVNSGS 722 >gi|45657308|ref|YP_001394.1| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600546|gb|AAS70031.1| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 1017 Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 89/264 (33%), Positives = 153/264 (57%), Gaps = 12/264 (4%) Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II +K F S + H+I+E K ++ L AK+IAE S K+DFLA +SHEIRTPL Sbjct: 467 IIHQKRVFLSVW----HEITERKVYEDSLKRAKEIAEAASKAKTDFLAMMSHEIRTPLNG 522 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 +IG +++ G N EY + I SG +L ++ND+LD+S+IESG++ L +PV Sbjct: 523 VIGTVSLLE----GTFLNTEQKEYLDIIKSSGQNLLILLNDILDLSRIESGQLKLEIQPV 578 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721 S ++ +E ++L + A EK +++ + + N+P I++D ++Q+ N++ N+I FT Sbjct: 579 SPEKLTNEVVNLFRPMAEEKGLVVESEVSFNVPNWIISDPYRLRQVLTNLIGNSIKFTEK 638 Query: 722 GG-QIIISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 G + + N++ +I V+DTG+G+ +LE + F Q+ +S + G+GLGL Sbjct: 639 GKIHLSVEAEKFPNDKLRLIFHVKDTGIGIAEEKLELLFRAFSQVDSSTTRKYGGSGLGL 698 Query: 779 PLAKAMVDANMGKFYIFSTPAKGT 802 ++K + + G+ + S G+ Sbjct: 699 TISKKLAELMKGEITVKSQVNSGS 722 >gi|291519211|emb|CBK74432.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Hpt domain./Response regulator receiver domain [Butyrivibrio fibrisolvens 16/4] Length = 857 Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 88/254 (34%), Positives = 142/254 (55%), Gaps = 14/254 (5%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L M D E +++ KL +I ++ S KS FL+ +SHEIRTP+ AIIG +E+I + Sbjct: 235 LEMADYIERFEKQQKLETELEITKQASEAKSSFLSNMSHEIRTPINAIIGMNEMIIRE-- 292 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA--VSEAIS 673 + + +EYAN +GN +L +VND+LD SKIE+GKM + PV D A V++ ++ Sbjct: 293 --CTDEQILEYANNAKSAGNSLLSLVNDILDFSKIEAGKMEIL--PVQYDLASMVNDLLN 348 Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 L+ A EK + + ++IP IL D +KQ+ N+L+NA+ +T G + +S + Sbjct: 349 LIAARAEEKGLDFEINVDSSIPSILIGDEIRLKQVVTNLLTNAVKYTER-GTVALSVSFE 407 Query: 733 SNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 N+E + V DTG+G+ ++ K PF +I + EGTGLG+ + + ++ Sbjct: 408 KNDENSITLHFEVSDTGIGIKESDIAKLYSPFERIEEIRNRTIEGTGLGMSIVRKLLALM 467 Query: 789 MGKFYIFSTPAKGT 802 K + S KG+ Sbjct: 468 DTKLIVESEYGKGS 481 >gi|52842130|ref|YP_095929.1| sensory box histidine kinase/response regulator [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629241|gb|AAU27982.1| sensory box histidine kinase/response regulator [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 910 Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 136/245 (55%), Gaps = 9/245 (3%) Query: 563 EWKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E +EKN +LS KK E++S KS+F+A +SHEIRTP+ +IGF+ V+ + PL Sbjct: 275 ELLEEKNIELSLEKKKTEEKSRQKSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL--- 331 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 ++Y I S +L I+ND+LD SKI++GK+NL P+ + + E +SL A++ Sbjct: 332 -QLDYVKTIKSSAQDLLSIINDILDFSKIDAGKLNLDCIPLDIRGCIDEVLSLASPNAHK 390 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---V 737 K I + N+P+ +L D +KQI N+++NA+ FT G +I + ++ + Sbjct: 391 KGIDLIPITDINVPKMVLGDPLRIKQIISNLVTNAVKFTDHGYVLIRTKIEQETDKDYTL 450 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + + DTG+G++ + K F Q S R G+GLGL + K + + G+ + S Sbjct: 451 LFAITDTGIGISPEDQTKLFTAFNQADTSITRRYGGSGLGLVICKKLCEEMHGRISLTSE 510 Query: 798 PAKGT 802 KG+ Sbjct: 511 INKGS 515 >gi|17229180|ref|NP_485728.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] gi|17135508|dbj|BAB78054.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] Length = 676 Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 131/252 (51%), Gaps = 26/252 (10%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A AE S +S+FLA +SHE+ TPLT +IG S + G L R +Y I Sbjct: 432 LRDALLAAEAASRLRSEFLATISHELLTPLTYVIGMSSTLLRWPLGELSQ-RQRDYLQTI 490 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL------------DEAVSEAISL-VQL 677 SG +LD++ND+LD+S+IE+GK L+ SL ++A+SE ++L + L Sbjct: 491 HDSGEHLLDMINDILDLSQIEAGKTVLNIAEFSLVKIAENTIESLLEKALSEQVNLKLDL 550 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 + +R R AD ++QI N+L+NAI FTP GG + + + Sbjct: 551 QIDPRR-----------DRFTADAARIEQILWNLLTNAIKFTPEGGNVTLRI-WVEEDTS 598 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 I +V DTG+G+ +L + F Q+ + R EGTGLGL L K +V+ + G+ + ST Sbjct: 599 IFQVEDTGIGIPEEQLPLLFEKFQQLDTPYRRRYEGTGLGLALTKQLVELHRGRIEVEST 658 Query: 798 PAKGTLIEIIFP 809 G++ + P Sbjct: 659 VGIGSIFTVWIP 670 >gi|17230584|ref|NP_487132.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132186|dbj|BAB74791.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1290 Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 87/275 (31%), Positives = 148/275 (53%), Gaps = 13/275 (4%) Query: 550 FSSCYSLTMHD----ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 F SC + HD I E Q + A+ E+ + K DFLA VSHE+R+PL I+G Sbjct: 886 FGSCTDI--HDQKLAIEERAQAWEQERAARIELERANRMKDDFLAIVSHELRSPLNPILG 943 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 +++++K+++ L + +E I+R+ L +++DLLD+S+I GK++L+ V L Sbjct: 944 WAKLLKSRKLDALKTNQALEV---IERNAKLQARLIDDLLDVSRILRGKLSLNVCTVDLV 1000 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + A+ V+L A K I I+T +++ R+ D ++Q+ N+L+NA+ FTP GGQI Sbjct: 1001 TTIEAALETVRLTAESKSIHIQTELTSHVCRVEGDPNRLQQVVWNLLTNAVKFTPEGGQI 1060 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 +S + I +VRDTG G++ L + F Q + G GLGL + + +V Sbjct: 1061 EVSLERVGSLAHI-QVRDTGKGISLDFLPYVFERFRQADEVTTRKFGGLGLGLAIVRHLV 1119 Query: 786 DANMGKFYIFSTPAK--GTLIEIIFPLYDTSHPHD 818 + + G + ++P + GT + PL S ++ Sbjct: 1120 ELHGGAVQV-TSPGEGLGTTFTVKLPLIAVSQIYE 1153 >gi|294505916|ref|YP_003569974.1| sensory transduction histidine kinase [Salinibacter ruber M8] gi|294342244|emb|CBH23022.1| sensory transduction histidine kinase [Salinibacter ruber M8] Length = 1106 Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 132/242 (54%), Gaps = 3/242 (1%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + KL AK+ AE+ + KS FLA +SHEIRTPLT+IIGF+E I ++ G G+P +A Sbjct: 859 EQKLREAKETAEQVNEMKSAFLANMSHEIRTPLTSIIGFAEAIGDEVSG--GDPTVSRFA 916 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I++ G +L+ ++ +L++SK+E+ +M L P+++ E ++ +L + A + I +R Sbjct: 917 GLIEKGGRRLLETLDAVLNLSKLEAEEMELALAPLNVAEQAADTGALFEQQAEKAGIDLR 976 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 + AD +++ + N++SNA+ +T GG++ I + ++ +L V DTG G Sbjct: 977 VDVPSGPLWARADEGALRIVLRNLVSNAVKYTGDGGRVWIR-ARRAEDQAVLEVEDTGQG 1035 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 M + + F Q + EGTGLGL + K VD G + + G+ + Sbjct: 1036 MDPAAVSTLFEAFKQASEGKGREYEGTGLGLAVTKQAVDQMEGTIDVDTEKGVGSRFVVR 1095 Query: 808 FP 809 P Sbjct: 1096 LP 1097 >gi|294054185|ref|YP_003547843.1| histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293613518|gb|ADE53673.1| histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 1191 Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 81/273 (29%), Positives = 146/273 (53%), Gaps = 8/273 (2%) Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 LR+ +L L E +++ +L AK+ AE + KS+F A +SHEIRTP+ Sbjct: 790 LRLRASRLHHQRLEELVGQRTQELQRQSEELVIAKEHAESANRIKSEFTANISHEIRTPM 849 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 +I+GF+++++++ NP + Y + + +SG+ +L +++DLLD+SK+E+ K++LH Sbjct: 850 NSIMGFADILRDETV----NPTHQHYLDAVLKSGDTLLHMIDDLLDMSKLEADKLSLHPR 905 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFT 719 P +L + + + Q +EK + + NIP +L D +Q+ LNI+ NAI FT Sbjct: 906 PTNLSSETRDTLRMFQPKLSEKALDLEFLSDPNIPSSLLIDATRYRQVLLNIVGNAIKFT 965 Query: 720 PSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 SG ++ + + + V + DTG G+ +L++ F Q G+GL Sbjct: 966 DSGKISIRLELVRQYALHAHVRCAISDTGEGIPENQLQRIFNAFEQASRDFTRSEMGSGL 1025 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GL ++K +V+ G+ + S +G+ + FP Sbjct: 1026 GLAISKRLVEMMDGQIRVVSRVGRGSTFTVDFP 1058 >gi|117926550|ref|YP_867167.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610306|gb|ABK45761.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1691 Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 119/431 (27%), Positives = 208/431 (48%), Gaps = 42/431 (9%) Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE--------VMQLCSILE 459 ++ LA+ FI AN + N P EPE++ +R+ + +E V + ++L+ Sbjct: 216 QSELAVDFIK-AGANDYI-NKP---YEPEELISRVYQMAESVERYGELNQMVARHKAVLD 270 Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL------EQNTPSVMNHYL 513 D I +++G +LS N A +LFGYP ++++ T L + PS+ N Sbjct: 271 NAQDAIITTDQQGDVLSYNPAAERLFGYPRQNVMGVSLTERLIPESLQNKQAPSLTNAMH 330 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNK 570 + + + LE I G + +L+ L++ + +P Y+ + DI++ KQ Sbjct: 331 GALEMVPNKGRLEAI--GKRIDGELIDLQVALSAMPQQGGELHYTAFIQDITDKKQLLKS 388 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AE S KS F+A +SHEIRTP+ A++GF+++ G L +P+ +Y Sbjct: 389 LEETLSAAESASKAKSAFIANMSHEIRTPMNAVLGFTDLALR---GDL-SPKVRDYLEKT 444 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD-----EAVSEAISLVQLYANEKRIL 685 + + ++ I+ND+LD SK++ G++ L +PV D E +++ S + A+ L Sbjct: 445 KNASHSLMGIINDILDFSKMDVGRLEL--DPVKFDLHFLLERLADLFS--KQAADHAVDL 500 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST---THTSNEEVILRVR 742 + + N + D ++QI +N++ NA+ FT +G + + + V Sbjct: 501 VFLAPLNFNQVLYGDAMRLEQIFINLIRNAVKFTKNGFITVRAQPELLEGHRVRLTCSVS 560 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D+G+G+ +L PF Q +S R GTGLGL + K +V G + S P KG+ Sbjct: 561 DSGIGIDPEQLPHLFAPFVQADSSTTRRFGGTGLGLSIVKRLVSLMDGSVWAESEPGKGS 620 Query: 803 L--IEIIFPLY 811 EI+ LY Sbjct: 621 QFHFEILVDLY 631 Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 128/237 (54%), Gaps = 6/237 (2%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K AE + KS+FLA +SHEIRTPL AI+G E++ R +E + +G Sbjct: 1305 KDEAEAGNRAKSEFLAIMSHEIRTPLNAILGTHELLSESALSS-EQQRLMEISR---NAG 1360 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 L+L++VN+ LD++KIE+GK++L + L V E + ++ A K + + + A + Sbjct: 1361 ELLLNLVNETLDLAKIEAGKLDLEYTIFDLPRLVEEITQIKRVAAEHKGVRLESEMALEV 1420 Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 PR ++ D ++QI +N+LSNAI FT SG + + + + +V DTGVG+ + + Sbjct: 1421 PRFVMGDPDRLRQILVNLLSNAIKFTNSG-TVSLQMSRGVADRTFFKVSDTGVGIAAHSM 1479 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 EK PF Q S + GTGLGL + K + +A G + S G+ + PL Sbjct: 1480 EKIFHPFTQADTSTTRKFGGTGLGLTICKHLCEAMGGDIQVESQVGVGSTFSVNLPL 1536 >gi|300866501|ref|ZP_07111191.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300335458|emb|CBN56351.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 795 Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 129/225 (57%), Gaps = 2/225 (0%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FL+ VSHE+RTP+ AIIGFSE++ QR P+ N + I+ I ++G +L ++N++ Sbjct: 570 KSHFLSTVSHELRTPMNAIIGFSELLLRQRQPPI-NSQQIDMVQRILKNGKNLLMLINNI 628 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+S+IE+G+ L E L V + ANEK + + + P I+ D + Sbjct: 629 LDLSRIEAGRTELEIEEFDLTNLVLCTALDFGIIANEKILSMSVYIYLDNPCIVNDKSRL 688 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +Q+ +N+LSNA+ FT G I I + S +++++ +RDTG+G+ ++ + F Q+ Sbjct: 689 RQVLVNLLSNAVKFTERGS-IYIHVSELSADKLLIEIRDTGIGIAETQIPHIFEKFRQVD 747 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + + GTGLGL + ++V+ GK + S KG+ + P Sbjct: 748 QTTKRKYPGTGLGLAITASLVNLMKGKIKVESEVGKGSSFRLELP 792 >gi|163750003|ref|ZP_02157247.1| sensor histidine kinase/response regulator [Shewanella benthica KT99] gi|161330277|gb|EDQ01258.1| sensor histidine kinase/response regulator [Shewanella benthica KT99] Length = 937 Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 91/252 (36%), Positives = 140/252 (55%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A + S KS+FLA +SHE+RTPL +IGF+ +++K PL + + +Y N Sbjct: 287 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKT----PLHSSQQ-DYVN 341 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S +L +ND+LD SK+E+GKM L P +L E + + I+L+ A +K I + Sbjct: 342 TIEKSATNLLGSINDILDFSKLEAGKMVLENMPFALRETLDDTITLLSNSARDKDIELVV 401 Query: 689 SFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDT 744 +IP L+ D QI N++ NAI FT SG + + ++++V LR V DT Sbjct: 402 DIDPSIPEDLSGDAMRFSQIITNLVGNAIKFTESGSVHLKLQLIEATDDKVKLRCEVIDT 461 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + E + FGQ +S R GTGLGL + K +V+ G+ S P G+ Sbjct: 462 GIGIDEDQQELLFQAFGQADSSISRRFGGTGLGLIITKRLVNRMGGQIGCHSKPNTGSTF 521 Query: 805 EIIFPLYDTSHP 816 PL + +P Sbjct: 522 WFTLPLGTSIYP 533 >gi|291523440|emb|CBK81733.1| Signal transduction histidine kinase [Coprococcus catus GD/7] Length = 986 Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 106/345 (30%), Positives = 176/345 (51%), Gaps = 25/345 (7%) Query: 481 VSKLFGYPVEDILRKPFTVFLE---QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 V KL G VE I RK + + + + +YL EI + R+ + T E++ Sbjct: 368 VEKLLGITVEQI-RKDICILGKLHPEESEDSEKNYLKEIQVYEQREWNFECVHQKTGEKR 426 Query: 538 LLSLRIIIKKLPFSSCYSLTMHD-ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 + + ++ Y L M D S+WK + LS A AE + KS FL+ +SH+I Sbjct: 427 WFYIVAMGSEVNGEKKYILVMSDRTSDWKMNQ-ALSEAVHAAETANRAKSIFLSNMSHDI 485 Query: 597 RTPLTAIIGFSEV----IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 RTP+ AIIGF+ + I +++ R +Y I S N +L ++ND+LD+S+IES Sbjct: 486 RTPMNAIIGFTTLAVSNIDDRK-------RVRDYLGKILSSSNHLLSLINDILDMSRIES 538 Query: 653 GKMNLHFEPVSLDEAVSEAISLV--QLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710 GK++L VSL + + + +++ Q++A + + + N + D + Q+ LN Sbjct: 539 GKLHLEETEVSLSDVLHDLKTIISGQIHAKQLELYMDAMDVTN-EDVYCDKTRLNQVLLN 597 Query: 711 ILSNAIHFTPSGGQIIIST-----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 +LSNA+ FTP+GG + + T +E +RV+D G+GM+ ++K PF + Sbjct: 598 LLSNAVKFTPAGGTVSVRIRQCPGTVKGSELYEIRVKDNGIGMSQEFVQKIFSPFERERT 657 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 S R +GTGLG+ + K +V+ G + + KGT + PL Sbjct: 658 STVSRTQGTGLGMAITKNIVNMMGGTIEVQTEQGKGTEFIVRLPL 702 >gi|84624296|ref|YP_451668.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84368236|dbj|BAE69394.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 1364 Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 101/380 (26%), Positives = 180/380 (47%), Gaps = 29/380 (7%) Query: 464 GIAII--NREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLD 520 G AII + G + N A K+ GY +++ R+ + F+EQ+ L + Sbjct: 503 GYAIIATDSSGFVTLFNPAAEKMLGYNAAEVIGRRKASQFIEQDELQERARMLADQTGTP 562 Query: 521 LRQTLEKI----TLGSTKEEKLLSLRIIIKKLP----FSSC---------YSLTMHDISE 563 + TLE I +LG + + + ++LP S+ Y D++E Sbjct: 563 VAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAVDLTE 622 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K + +L A A+ + KSDFLA +SHEIRTP+ AI+G +++ Sbjct: 623 QKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQ--- 679 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + IDRS +L+I+ND+LD SKIE+G+++L P L++ L++ + K Sbjct: 680 -DMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLSAKP 738 Query: 684 I-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVI 738 + +I + +L D + Q+ +N++ NAI FT G ++ S + +++ Sbjct: 739 VEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKFKLL 798 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 VRDTG+G++ + PF Q S R G+GLGL +++ +++ G+ + S P Sbjct: 799 FSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEVESVP 858 Query: 799 AKGTLIEIIFPLYDTSHPHD 818 +G+ + L ++ P + Sbjct: 859 GRGSEFYFVITLEKSAPPQE 878 >gi|54297835|ref|YP_124204.1| transmission sensor LetS [Legionella pneumophila str. Paris] gi|53751620|emb|CAH13039.1| Legionella transmission sensor LetS [Legionella pneumophila str. Paris] Length = 910 Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 136/245 (55%), Gaps = 9/245 (3%) Query: 563 EWKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E +EKN +LS KK E++S KS+F+A +SHEIRTP+ +IGF+ V+ + PL Sbjct: 275 ELLEEKNIELSLEKKKTEEKSRQKSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL--- 331 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 ++Y I S +L I+ND+LD SKI++GK+NL P+ + + E +SL A++ Sbjct: 332 -QLDYVKTIKSSAQDLLSIINDILDFSKIDAGKLNLDCIPLDIRGCIDEVLSLASPNAHK 390 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---V 737 K I + N+P+ +L D +KQI N+++NA+ FT G +I + ++ + Sbjct: 391 KGIDLIPITDINVPKMVLGDPLRIKQIISNLVTNAVKFTDHGYVLIRTKIEQETDKDYTL 450 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + + DTG+G++ + K F Q S R G+GLGL + K + + G+ + S Sbjct: 451 LFAITDTGIGISPEDQTKLFTAFNQADTSITRRYGGSGLGLVICKKLCEEMHGRISLTSE 510 Query: 798 PAKGT 802 KG+ Sbjct: 511 INKGS 515 >gi|310826218|ref|YP_003958575.1| hypothetical protein ELI_0596 [Eubacterium limosum KIST612] gi|308737952|gb|ADO35612.1| hypothetical protein ELI_0596 [Eubacterium limosum KIST612] Length = 795 Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 90/274 (32%), Positives = 144/274 (52%), Gaps = 24/274 (8%) Query: 560 DISEWKQEKNKLS-------HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 D++E ++ + KL A AE+ S KSDFL+ +SH+IRTP+ AI+G +E+ + Sbjct: 256 DVTELREMQQKLEAQAAELKEALTAAEQASRAKSDFLSSMSHDIRTPMNAIVGMTEIARI 315 Query: 613 QRFGPLGNPRYIEYANYIDR---SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 L +P +E N +D+ S +L ++ND+LD+S IESG M L SL + + Sbjct: 316 H----LDDPGRVE--NCLDKIALSSQHLLGLINDVLDMSAIESGSMALSNSAFSLPDFME 369 Query: 670 EAISLVQLYANEKR--ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 ++++Q A EKR + IRT F + AD +KQI +NILSNA+ FTP G I + Sbjct: 370 NIVAIIQPAAAEKRQHLFIRT-FGVEHEHLYADPLRLKQIFINILSNAVKFTPEEGSITL 428 Query: 728 S-----TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 + + DTG+GMT+ + F + +S+ + EG+GLG+ + K Sbjct: 429 TLEEFPAAREGCGQFRFTFADTGMGMTDAFMTHIFDSFTRERDSRVDKTEGSGLGMAITK 488 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 +VD G+ + S KG+ + L+ +P Sbjct: 489 RIVDMMGGRITVRSAEGKGSTFVVYLSLHIEENP 522 >gi|88797749|ref|ZP_01113337.1| PAS [Reinekea sp. MED297] gi|88779426|gb|EAR10613.1| PAS [Reinekea sp. MED297] Length = 1593 Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 101/355 (28%), Positives = 176/355 (49%), Gaps = 13/355 (3%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S+LE+ D I++ +GII NR ++FGY ++L + L + + Sbjct: 722 SLLESAPDPTFIVDEQGIIQLVNRRSEQMFGYERNELLGQNIDTLLPERFKANHPQQRAA 781 Query: 516 ILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKL 571 + R+ + + K+ + + + +P + S + DI+E K + KL Sbjct: 782 FIQNPTRRLMGVGRDLFARCKDGTEFPVEVTLGVVPLEDRTLVSAALRDITERKNSEEKL 841 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 HA A + KS FLA SHEIRTPL AIIG S ++ ++ L +++ + I Sbjct: 842 QHAITQAMSSAEAKSAFLANTSHEIRTPLNAIIGLSHLLDHEN---LTENQHL-LVDKIQ 897 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 SG +L+I+ND+LD+SKIE+ ++++ PV+L E + + +++ ++ A+ K + + + Sbjct: 898 LSGQSLLNIINDVLDLSKIEANEVDIESTPVNLRELIEDTLNVHRMQADLKGLEVALNID 957 Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS---TTHTSNEEVILRVRDTGVG 747 +P + D +KQI N+ SNA+ FT S G I + T V V DTG+G Sbjct: 958 PKVPNWVETDKTRLKQILDNLFSNALKFT-SEGSISLRCHLVEETDRATVRFEVIDTGIG 1016 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 ++ ++ +PF Q S + GTGLGL + +V G+ + S +G+ Sbjct: 1017 ISEKAQQQLFEPFTQADVSTTRKYGGTGLGLSIILKLVYLMEGRLGLESEEGQGS 1071 >gi|304415494|ref|ZP_07396133.1| putative two-component sensor/regulator [Candidatus Regiella insecticola LSR1] gi|304282653|gb|EFL91177.1| putative two-component sensor/regulator [Candidatus Regiella insecticola LSR1] Length = 886 Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 130/250 (52%), Gaps = 11/250 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ +L+ AK+ AE+ S KS L +SHEIRTPL +G E+++N PL P + Sbjct: 378 KERTLELAQAKQEAEQASRRKSLHLTTISHEIRTPLNGSLGAIELLQNT---PL-TPAQL 433 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 A+ +L I+NDLLD S+IESG+M L E +L + +A+ +Q A K + Sbjct: 434 RLADTARLCSFSLLGIINDLLDFSRIESGQMTLALEETALLPLLDQAMLAIQSSAMTKSL 493 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + T N+P ++ D ++QI +N+L NA+ FT SG I +++ V+D Sbjct: 494 TLCTHVGENVPLKLQLDALRLRQILINLLGNAVKFTQSGA--ITLRVERKKDKLYFIVQD 551 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG G+ K +PF Q + G+GTGLGL +A + G + STP GT Sbjct: 552 TGCGIDAENQRKIFEPFFQTSS----HGQGTGLGLAIACNLAKLMQGTLQLQSTPKAGTC 607 Query: 804 IEIIFPLYDT 813 + PL +T Sbjct: 608 FSLQLPLNET 617 >gi|237746502|ref|ZP_04576982.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] gi|229377853|gb|EEO27944.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] Length = 718 Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 89/286 (31%), Positives = 147/286 (51%), Gaps = 13/286 (4%) Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 +L + I+I + F + +L +H+ Q +L A + A + ++ + DFLAR+SHEIR Sbjct: 300 ILVMAILI--VSFVAMANLNIHNY-RVAQANRQLRQAVEQANQANAARRDFLARISHEIR 356 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TPL I+G E++ R + +EY S N +L +++D+LDIS+IESGK+ L Sbjct: 357 TPLNGIVGMIELV---RLEYDAKEKCLEYLRKATVSANYLLGLLSDVLDISRIESGKLTL 413 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716 H + + E +L A ++++ IR + R + D +KQ+ +N++SNAI Sbjct: 414 HNDLADMRVLREEVEALAGTLAEKRQLTIRIDDSGMKHRYFVTDYLRLKQVLVNLVSNAI 473 Query: 717 HFTPSGGQIII-----STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 +T GG I++ + T S V L+V+D G G+ +L++ +PF Q ++ R Sbjct: 474 KYTGDGGHIVVNFSEEAATEDSRSLVTLQVQDDGQGIAPDKLKEIFEPFEQGGGGKK-RE 532 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 G GLGL + V G + S P +G+ I PL H Sbjct: 533 NGVGLGLSIVTGTVTLMGGHINVESEPGRGSRFTITLPLTVGEKSH 578 >gi|220920192|ref|YP_002495493.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219944798|gb|ACL55190.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 1009 Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 79/233 (33%), Positives = 132/233 (56%), Gaps = 15/233 (6%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE----YANYIDRS 633 AE S K+DFLA +SHEIRTPL+++IG++E++ L +P E A+ I + Sbjct: 515 AELASQAKTDFLASMSHEIRTPLSSVIGYTELL-------LDDPDLTEGQRLQASRIRSA 567 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G+ +L +V+D+LD SKIE+G+++L P +L + A+++V+ A K + IR Sbjct: 568 GSALLTVVDDILDFSKIEAGQVDLDLMPFALHGLIENAVAIVRQLAERKGLEIRVDIDPA 627 Query: 694 IPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMT 749 +P+ L D ++QI LN L+NA+ FT G ++ T S + + + V DTG+G+ Sbjct: 628 LPQTLVGDQNRLRQILLNFLNNALKFTRRGRVVLAVATAGSTDRGWPIRVSVTDTGIGIA 687 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + + K F Q+ S + GTGLGL ++K +++ G + S P +G+ Sbjct: 688 PEQQARLFKRFTQVDGSIRREFGGTGLGLAISKKLIELMGGAIGVVSAPGEGS 740 >gi|160935994|ref|ZP_02083367.1| hypothetical protein CLOBOL_00890 [Clostridium bolteae ATCC BAA-613] gi|158440804|gb|EDP18528.1| hypothetical protein CLOBOL_00890 [Clostridium bolteae ATCC BAA-613] Length = 886 Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 83/234 (35%), Positives = 129/234 (55%), Gaps = 12/234 (5%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA-NYIDRSGNLVLDIVND 643 K+ FL+ +SH+IRTP+ AIIG +E+ K Q + NP ++Y + I SGN +L +VND Sbjct: 371 KTKFLSSMSHDIRTPMNAIIGMTEIAKKQ----IHNPAQVQYCLDKITLSGNHLLTLVND 426 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLR 702 +LDIS++ESGKM LH SL E + I++++ EK + N + AD Sbjct: 427 VLDISQVESGKMALHPVVFSLPECCANLINIIKSQIQEKELQFDVHVRNLKYEYLYADEL 486 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHT------SNEEVILRVRDTGVGMTNYELEKA 756 + QI +N+L+NA+ +T GG+II+ N + V+DTG+GM++ + Sbjct: 487 RMNQIFINLLTNAVKYTNPGGKIIVEFEEALQPGDKGNVVLTYTVQDTGIGMSSDFMRDM 546 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F + +S+ + G+GLGL + K MV+ G S P KGT + PL Sbjct: 547 YQTFTRAVDSRIDKVHGSGLGLAITKQMVELMNGTINCESEPGKGTRFIVALPL 600 >gi|303241662|ref|ZP_07328160.1| multi-sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] gi|302590777|gb|EFL60527.1| multi-sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] Length = 606 Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 102/388 (26%), Positives = 188/388 (48%), Gaps = 46/388 (11%) Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 I++ K +IE +IL +DG+ N +G ++ N A + G Sbjct: 254 ISREKNKIE-----TILNYMTDGVIAFNLDGEVVHANPASKLMLG--------------- 293 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK---LPFSSCYSLTM 558 +N + ++D + LG T EE +L L K L F + Y Sbjct: 294 -------VNEF-----NMDFNKFSNMYNLGITIEE-MLYLETFSTKEASLSFDNKYIRVY 340 Query: 559 HDISEWKQEKNK----LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 +S Q K + + H + +K + + +F+A VSHE+RTPLT+I +SE + + Sbjct: 341 FALSTNDQNKAEGIIAVMHDNTVQQKLDNMRREFVANVSHELRTPLTSIKSYSETLMD-- 398 Query: 615 FGPLGNPR-YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G L + + N I+ + + +V DLL +S++E+ +M + +P + V ++ Sbjct: 399 -GALEDKETAYRFLNVINSEADRMTRLVKDLLQLSRLENEQMQWNMQPFCFESLVRSSVE 457 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++L A EKR +I + P + AD ++Q+ LN+L+NAI +TP G+I + Sbjct: 458 KIELSAKEKRQVIECFSIGDKPEVYADKDRIEQVVLNVLTNAIKYTPDKGKITVYIGKMY 517 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ + +V D+G+G+ ++++ + F ++ ++ GTGLGL +AK +++A+ G Sbjct: 518 SDAYV-KVVDSGIGIPEEDIKRVFERFYRVDKARSREMGGTGLGLSIAKEIIEAHKGSIS 576 Query: 794 IFSTPAKGTLIEIIFPL-YDTSHPHDCI 820 I S KGT + + P+ Y++ D I Sbjct: 577 ISSQLGKGTEVIVRLPIHYESGIKEDVI 604 >gi|254465258|ref|ZP_05078669.1| multi-sensor hybrid histidine kinase [Rhodobacterales bacterium Y4I] gi|206686166|gb|EDZ46648.1| multi-sensor hybrid histidine kinase [Rhodobacterales bacterium Y4I] Length = 985 Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 105/394 (26%), Positives = 185/394 (46%), Gaps = 21/394 (5%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILR 494 ED + K++ E+ + L + + SD I + + IL N A ++ GY E I R Sbjct: 458 EDAHAELQKQQAELHRLSL--VAKHASDSIILTDASRKILWVNDAFTRATGYSAGEAIGR 515 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553 P + +T + + +R E + + EE I+ P + Sbjct: 516 TPSDLLDGPDTDLSVVREMNRHKDGGIRYHNEVLNYTKSGEEVWFDTNIV----PVTGAD 571 Query: 554 --YSLTM---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 L + DI+ KQ + +L+ AK AE KS+FLA +SHEIRTP+ IIG ++ Sbjct: 572 GEVDLIIGIERDITRSKQRERELAEAKLAAEHADRAKSEFLANMSHEIRTPMNGIIGMAD 631 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++ + + +E I S +L I+ND+LD+S++E+GK + E +L + + Sbjct: 632 LLAEAEL-TADDQQNVE---TIRSSAQALLKIINDILDLSRLEAGKFAISREDFNLRDCI 687 Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727 A L + A EK + ++ S+AN +P R+ D ++QI +N++ NA+ FTP G+I + Sbjct: 688 GGAADLFRPKALEKGLSMQVSYANGLPDRLHGDDGRLRQILVNLIGNAVKFTPD-GKIAV 746 Query: 728 STTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + + +++ V D+G+G++ + + F Q + GTGLGL ++ + Sbjct: 747 RVSQAGEDPCRLVVEVEDSGIGISETQAKHIFDRFTQADAATTKAFGGTGLGLTISSMLA 806 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 G + S P KG+ + + S D Sbjct: 807 KRMGGGITVQSQPGKGSCFRLELQMVPASQAVDA 840 >gi|157962196|ref|YP_001502230.1| histidine kinase [Shewanella pealeana ATCC 700345] gi|157847196|gb|ABV87695.1| histidine kinase [Shewanella pealeana ATCC 700345] Length = 806 Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 79/236 (33%), Positives = 130/236 (55%), Gaps = 8/236 (3%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A++ ++ +S KS FLA +SHEIRTPL IIG +E++ + + + +Y I Sbjct: 304 LIFAREKEQQANSAKSSFLANMSHEIRTPLNGIIGMTEILTDSKLTAIQK----DYLATI 359 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + S +L ++ND+LD+SKIESG + ++ E + + +L+ A +K I++R Sbjct: 360 NSSSQTLLMLINDILDLSKIESGHLEFCPHTCNIKEVIYDTAALITPKAQQKNIVLRIII 419 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGV 746 + +P I AD + ++QI +N+ SNAI FT SG ++++ N ++ V+DTGV Sbjct: 420 GDEVPTYICADEQKLRQILMNLASNAIKFTRSGSVSFKLVVKAEEGENIRLLFSVKDTGV 479 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+ + K + F Q ++ I GTGLGL +A MV G+ I S G+ Sbjct: 480 GIDKNKHAKIFEEFQQEESNTSIDYGGTGLGLSIATKMVKIMGGEIMISSDKGVGS 535 >gi|332703722|ref|ZP_08423810.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553871|gb|EGJ50915.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 880 Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 87/280 (31%), Positives = 146/280 (52%), Gaps = 23/280 (8%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 +HDI+E K+ + L AK AE + KS+FLA +SHEIRTP+ +IG +E+ Q P Sbjct: 469 VHDITERKRLEEDLFQAKAEAEAANRAKSEFLASMSHEIRTPMNGVIGLTELALMQE--P 526 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 G R +Y + +S N +LDI+ND+LD+SKIE+G++ L L + + ++L Sbjct: 527 KGKVR--DYLGLVKQSANSLLDIINDILDLSKIEAGRVELENADFDLRDMLDSLFETMRL 584 Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTS 733 A KR+ + +P I D ++QI +N++ NA+ +T +G + + H S Sbjct: 585 TAERKRLSFTAAIDPGVPDWIKGDEGRLRQIFVNLIGNAVKYTETGQVSVHVGLENAHDS 644 Query: 734 NEE----------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 +++ V+DTG+G+ +LEK PF ++ + +GTGLGL + Sbjct: 645 PVAGDSDKPEHICLLVSVKDTGIGIPKNKLEKIFDPFD--TGARGAKHDGTGLGLTITNR 702 Query: 784 MVDANMGKFYIFSTPAKG---TLIEIIFPLYDTSHPHDCI 820 +V+ G+ + S P +G T + P DT+ + + Sbjct: 703 LVELMGGRIIVRSEPGQGSTFTFSAALEPASDTATTQESL 742 >gi|296822116|ref|XP_002850232.1| two-component sensor protein histidine protein kinase [Arthroderma otae CBS 113480] gi|238837786|gb|EEQ27448.1| two-component sensor protein histidine protein kinase [Arthroderma otae CBS 113480] Length = 2349 Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 133/249 (53%), Gaps = 21/249 (8%) Query: 573 HAKKIAEKESSH-----------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 H K+AE E++H KS FLA +SH++RTP+T +IG SE++K + +P Sbjct: 1831 HKAKVAEVEANHNVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKL----DP 1886 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + Y I + +L ++ND+LD SK+E+GKM + P++L + ++E + ++ E Sbjct: 1887 KQDVYVESIRVCADTLLTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHRE 1946 Query: 682 KRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEE 736 K + + P +L D + QI +N+LSN+ FTP G Q I+ Sbjct: 1947 KGLETVEDLDSIDPNLLVMGDPVRLHQIFMNLLSNSYKFTPKGSVTVQAIVEEDTPEQIR 2006 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIF 795 V +V DTG+G++ +L + +PF Q +S G+GLGL + KA++ D G+ ++ Sbjct: 2007 VTCKVADTGIGISEEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQ 2066 Query: 796 STPAKGTLI 804 S +GT + Sbjct: 2067 SKEGEGTTV 2075 >gi|170738842|ref|YP_001767497.1| multi-sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] gi|168193116|gb|ACA15063.1| multi-sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] Length = 830 Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 139/263 (52%), Gaps = 5/263 (1%) Query: 549 PFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 P +L H D++ + L+ + E+ + + +F+ VS+E+R+PLT IIGF+ Sbjct: 561 PLPDGATLLTHIDVTASVNVERALTEKNEALERTARLRDEFVHHVSYELRSPLTNIIGFT 620 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 E++ ++ G L N R EYA++I RS +L I+ND+LD++ I++G M L E V + Sbjct: 621 ELLGDETVGAL-NTRQREYADHIMRSSAALLVIINDILDLASIDAGSMELTREVVDVQAT 679 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 ++ A+ ++ E I + +I +AD + ++QI N+LSNAI F+ GQ ++ Sbjct: 680 IAAAVRGIEDRLAEAAITLDLDVPADIGGFVADGKRIRQILFNLLSNAIGFSAP-GQTVV 738 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + E+ V D G GM + + F ++ R G GLGL + ++ V+ Sbjct: 739 VQARKTGAEIAFSVIDQGRGMPPEVVARVFDRFES--HTLGTRHRGVGLGLSIVRSFVEL 796 Query: 788 NMGKFYIFSTPAKGTLIEIIFPL 810 + G+ I S P +GT + FP+ Sbjct: 797 HGGRIDIASAPGQGTRVTCTFPI 819 >gi|256828852|ref|YP_003157580.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578028|gb|ACU89164.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 862 Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 93/256 (36%), Positives = 143/256 (55%), Gaps = 16/256 (6%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DISE K+ + +L AKK AE + KS+FLA +SHEIRTPL ++G +++ R G L Sbjct: 454 RDISERKEAELRLEAAKKQAEVANQAKSEFLANMSHEIRTPLNGLLGMLQLV---RMGDL 510 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLV 675 R +Y + SG +L ++ND+LD+SKIESGK L F +L ++V E Sbjct: 511 DAERS-QYLDVAMNSGEGLLAVINDILDLSKIESGKFELAPVDFNVHALVQSVGETF--- 566 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTT---H 731 + A K + + ++P + AD ++QI N++ NA+ FT + G+I IS + Sbjct: 567 RFPARSKGVELIVETDADMPVFIHADQVRIRQILYNLVGNAVKFTLA-GEIRISLSMPFQ 625 Query: 732 TSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 T N ++ +RV DTGVG+ + +PF Q + + RG GTGLGL + K +V G Sbjct: 626 TGNRGQMEIRVADTGVGIPLDQQAALFEPFVQASTAPKTRGSGTGLGLSIVKRIVGFMGG 685 Query: 791 KFYIFSTPAKGTLIEI 806 + + STP +GT + + Sbjct: 686 RVRLDSTPGEGTTLTV 701 >gi|326800542|ref|YP_004318361.1| multi-sensor hybrid histidine kinase [Sphingobacterium sp. 21] gi|326551306|gb|ADZ79691.1| multi-sensor hybrid histidine kinase [Sphingobacterium sp. 21] Length = 850 Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 86/258 (33%), Positives = 137/258 (53%), Gaps = 9/258 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L + DI + + + +L AK+ AE S+ K FL+ +SHE+RTPL +IIG++E ++++ Sbjct: 328 LILSDIRKSNRYRRELEIAKEEAEYHSAAKQRFLSNMSHELRTPLQSIIGYAEQLRDE-- 385 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 +P N I +S +L IVN++LD ++I SGK + + + L + + E ++ + Sbjct: 386 ----HPEDSRKVNVIYQSSEHLLQIVNEVLDYNRINSGKFHFNNQDFYLSQLIEEVVAAM 441 Query: 676 QLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 QL A EK + + S + D +KQI N+LSNAI FT G ++ +T N Sbjct: 442 QLQAEEKSLSLNLSKEIEGTGYLFGDPFRIKQILYNLLSNAIKFTDQGSVTLMVSTAVKN 501 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 E LR V DTG G+ ++ + F Q NS G+GLGL + K + +A G Sbjct: 502 ELTELRITVEDTGKGIPESDIHRIFNEFEQAENSNSGTHFGSGLGLSIVKTLCEAMGGNI 561 Query: 793 YIFSTPAKGTLIEIIFPL 810 I S KG+ ++ PL Sbjct: 562 RIKSQLGKGSTFDVFIPL 579 >gi|152996044|ref|YP_001340879.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150836968|gb|ABR70944.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 1258 Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 85/256 (33%), Positives = 135/256 (52%), Gaps = 10/256 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ K+ + L +A A S KSDFLA +SHEIRTPL ++G +E++ + Sbjct: 577 DITSRKETEVLLRNASDQAVAASKAKSDFLATMSHEIRTPLNGVLGMAELLSGTKL---- 632 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 NP N + SG +L ++NDLLD SKIE+G +++ +L++A+ + I L+ + A Sbjct: 633 NPEQTTQLNVLKESGEGLLGLINDLLDFSKIEAGHISIERVDFNLEKAIYDVIRLLMMRA 692 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--- 735 +EK I + + PR L D+ +KQI N++SNAI FT S G +++S ++ Sbjct: 693 DEKGIDLLVEYDEVCPRFLVGDVFRIKQILTNLISNAIKFT-SIGHVLVSVKGIVDKHGM 751 Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + + V DTGVG+ + F Q +S + GTGLGL + K ++ G + Sbjct: 752 VSITISVADTGVGIADKVQPHLFTAFVQADSSTTRKFGGTGLGLAITKQLIGLMNGNISL 811 Query: 795 FSTPAKGTLIEIIFPL 810 S G+ + F L Sbjct: 812 SSKLNVGSTFTVTFAL 827 >gi|327308180|ref|XP_003238781.1| serine/threonine protein kinase [Trichophyton rubrum CBS 118892] gi|326459037|gb|EGD84490.1| serine/threonine protein kinase [Trichophyton rubrum CBS 118892] Length = 2415 Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 134/249 (53%), Gaps = 21/249 (8%) Query: 573 HAKKIAEKESSH-----------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 H KIAE E++H KS FLA +SH++RTP+T +IG SE++K + +P Sbjct: 1863 HKAKIAEVEANHNVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKL----DP 1918 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + Y I + +L ++ND+LD SK+E+GKM + P++L + ++E + ++ E Sbjct: 1919 KQDVYVESIRVCADTLLTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHRE 1978 Query: 682 KRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 K + + P +L D + QI +N+LSN+ FTP G + + E Sbjct: 1979 KGLDTVEDLDSIDPDLLVMGDPVRLHQIFMNLLSNSYKFTPVGSVTVRAIVEEDTPEKIR 2038 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIF 795 V +V DTG+G++ +L++ +PF Q +S G+GLGL + KA++ D G+ ++ Sbjct: 2039 VTCKVADTGIGISEEQLDRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQ 2098 Query: 796 STPAKGTLI 804 S +GT + Sbjct: 2099 SKEGEGTTV 2107 >gi|166711696|ref|ZP_02242903.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 1364 Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 101/380 (26%), Positives = 180/380 (47%), Gaps = 29/380 (7%) Query: 464 GIAII--NREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLD 520 G AII + G + N A K+ GY +++ R+ + F+EQ+ L + Sbjct: 503 GYAIIATDSSGFVTLFNPAAEKMLGYNAAEVIGRRKASQFIEQDELQERARMLADQTGTP 562 Query: 521 LRQTLEKI----TLGSTKEEKLLSLRIIIKKLP----FSSC---------YSLTMHDISE 563 + TLE I +LG + + + ++LP S+ Y D++E Sbjct: 563 VAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAVDLTE 622 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K + +L A A+ + KSDFLA +SHEIRTP+ AI+G +++ Sbjct: 623 QKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQ--- 679 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + IDRS +L+I+ND+LD SKIE+G+++L P L++ L++ + K Sbjct: 680 -DMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLSAKP 738 Query: 684 I-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVI 738 + +I + +L D + Q+ +N++ NAI FT G ++ S + +++ Sbjct: 739 VEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKFKLL 798 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 VRDTG+G++ + PF Q S R G+GLGL +++ +++ G+ + S P Sbjct: 799 FSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEVESVP 858 Query: 799 AKGTLIEIIFPLYDTSHPHD 818 +G+ + L ++ P + Sbjct: 859 GRGSEFYFVITLEKSAPPQE 878 >gi|163793906|ref|ZP_02187880.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159181017|gb|EDP65534.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 216 Score = 130 bits (328), Expect = 7e-28, Method: Composition-based stats. Identities = 72/201 (35%), Positives = 114/201 (56%), Gaps = 2/201 (0%) Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + +RFGPL + RY YA I +SG +L ++ND+LDI+++E+GK+++ + + V Sbjct: 1 MAEERFGPL-SARYAGYARDIRQSGEHLLGVINDILDITRVEAGKIDIDIQAIGAHGMVD 59 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 I L++ ANE I +R N P I AD + ++Q+ LN++ NA+ F+ ++II Sbjct: 60 SCIRLLRQRANEANITLRNDVPFNAPPIHADAQRLRQVVLNVVGNAVKFSNPDSEVIIEF 119 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 T+ L+V D G+GM + A +PF Q+ + EG GLGLPL + +D + Sbjct: 120 LETA-LGTGLKVIDHGIGMPAENISSAFEPFSQLHSGLGRSYEGAGLGLPLVRRFMDLHG 178 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G I S +GT + IIFPL Sbjct: 179 GVIDIQSETGQGTTVSIIFPL 199 >gi|2765035|emb|CAA71030.1| sensory histidine protein kinase [Calothrix viguieri] Length = 744 Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 102/357 (28%), Positives = 178/357 (49%), Gaps = 26/357 (7%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI----LRKPFTVFLEQNTPSVMNHY 512 +L+ GI + EGI+ N+A + G P + + K + ++L + + Sbjct: 369 LLDNVQAGIVACDAEGILTLFNQAARQFHGLPEQALPPEEWAKHYDLYLPDGKTRMSKNE 428 Query: 513 LTEILSLDLRQTLEKITL------GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK- 565 + +L QT++ + + G K L S + I+ + MHDI+E K Sbjct: 429 IPLFRALQ-EQTVKNVEMVIAPKHGKVKT-LLASGQAIVDNEGKKQGAVVVMHDITERKI 486 Query: 566 ---------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 +++ + A+ AE+ + K +FLA +SHE+RTPL I+G+++++ R G Sbjct: 487 AEAERIQLIRQQVQEQSARLKAEEANRLKDEFLAVLSHELRTPLNPILGWTKLL---RAG 543 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L + + I+R+ L ++ DLLD+S+I GK++L+ V+L +S AI VQ Sbjct: 544 KLDSAKTDYALETIERNAKLQTQLIGDLLDVSRILQGKLSLNMAAVNLAPTISAAIETVQ 603 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 L A K I I T F N+ ++L D ++Q+ N+LSNA+ FT +GG++ I ++ Sbjct: 604 LAAQAKSIQIETVFDPNVGQVLGDSTRLQQVVWNLLSNAVKFTKNGGRVEIRLECVDSQA 663 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG G++ L + F Q + + G GLGL + + +V+ + G Y Sbjct: 664 EI-KVSDTGKGISPDFLPHVFESFRQADATITRKFGGLGLGLAIVRHLVELHGGTIY 719 >gi|34497953|ref|NP_902168.1| hybrid sensory kinase [Chromobacterium violaceum ATCC 12472] gi|34332809|gb|AAQ60169.2| probable hybrid sensory kinase [Chromobacterium violaceum ATCC 12472] Length = 738 Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 84/245 (34%), Positives = 131/245 (53%), Gaps = 10/245 (4%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + AK++AE+ + KS FLA +SHEIRTP+ AIIG S + + + Y I Sbjct: 1 MREAKQMAEQATRAKSLFLANMSHEIRTPMNAIIGMSYLALRTDL----DDQQRNYIGKI 56 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 +G +L I+ND+LD SK+E+GK+ L +P LD+ + +LV A +K + + Sbjct: 57 HNAGTSLLGIINDILDFSKVEAGKLELEAQPFWLDDVLDGVSALVAQKAADKGLELLFET 116 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGV 746 A ++P+ ++ D + Q+ N+ NAI FT +G III ++V L+ V DTG+ Sbjct: 117 AGDVPQGLVGDALRLGQVLTNLAGNAIKFTETGQVSIIIGQVERIGDKVQLKFCVHDTGI 176 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 GM+ + + + F Q S R GTGLGL +AK +V+ G + S P G+ Sbjct: 177 GMSEEQQSRLFQAFSQADGSTTRRFGGTGLGLTIAKRLVELMGGSMLVESAPGWGS--SF 234 Query: 807 IFPLY 811 IF + Sbjct: 235 IFSCW 239 >gi|327480054|gb|AEA83364.1| sensor/response regulator hybrid protein [Pseudomonas stutzeri DSM 4166] Length = 914 Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 85/258 (32%), Positives = 139/258 (53%), Gaps = 8/258 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+E + A + A E+ KS FLA++SHEIRTPL ++G ++++ PL + Sbjct: 389 KEEGYRSREAAERAASENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRET---PLDRSQQF 445 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 Y + I SGN ++ ++ND+LD ++I SGK++L L+ +SE I L A EK++ Sbjct: 446 -YLDTISSSGNSLMAVINDILDYARIGSGKLSLEDIDFDLEILISETIRLFTAQALEKQL 504 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHT--SNEEVILR 740 + +P RI D +KQI +N+LSNA+ FT G ++ +S+ T + ++ Sbjct: 505 SLHVGLEPGVPRRIRGDPTRLKQILMNLLSNALKFTEHGHVLLEVSSRQTQDGSRRLVFC 564 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D+G+GM L + + F Q +S R G+GLGL ++K +V+ G + S P + Sbjct: 565 VSDSGIGMRQEVLAQLFESFSQGDSSTTRRYGGSGLGLAISKELVEMMNGHIEVQSAPGR 624 Query: 801 GTLIEIIFPLYDTSHPHD 818 G+ PL+ S D Sbjct: 625 GSRFCFEIPLHAASDVED 642 >gi|303240370|ref|ZP_07326888.1| PAS/PAC sensor hybrid histidine kinase [Acetivibrio cellulolyticus CD2] gi|302592097|gb|EFL61827.1| PAS/PAC sensor hybrid histidine kinase [Acetivibrio cellulolyticus CD2] Length = 850 Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 86/254 (33%), Positives = 141/254 (55%), Gaps = 11/254 (4%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y + DISE K +L+ +K+ AE + KS FLA +SHEIRTPL ++G +I Sbjct: 338 YIGAVFDISEHKSMMEELNKSKEEAEAANKAKSQFLANMSHEIRTPLNGMVG---MIDLT 394 Query: 614 RFGPLGNPRY--IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 L N + +E A S +L ++N++LD SKIE+GK+ L L++ + + Sbjct: 395 LMSDLNNEQRDNLETAKSCVDS---LLKLINEILDFSKIEAGKLELVNSSFRLEDLLEQT 451 Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIIST 729 + ++ A E +++ S ++++P I+ D +KQ+ N+LSNA+ FT +G + + Sbjct: 452 VKPYKIKAKEHNVMVDYSISSDLPEYIIGDQLRIKQVLNNLLSNALKFTEAGSINLKVDI 511 Query: 730 THTSNEEVIL-RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 N+E IL V DTGVG+ + ++EK K F Q+ NS + GTGLGL ++K +++ Sbjct: 512 NTIDNDEFILFEVSDTGVGIADEDMEKLFKSFSQVDNSYTRKYNGTGLGLAISKRLIEKM 571 Query: 789 MGKFYIFSTPAKGT 802 G +I S G+ Sbjct: 572 GGSIWIKSEKGIGS 585 >gi|322417779|ref|YP_004197002.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320124166|gb|ADW11726.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 1084 Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 132/247 (53%), Gaps = 14/247 (5%) Query: 574 AKKIAEKESSH---------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP-RY 623 A++ AE E ++ +SDFL+ VSHE+RTPLT+I FSE++ + +P + Sbjct: 808 ARRTAELEQANTRLLELDRLRSDFLSTVSHELRTPLTSIRSFSEILLRYE---VDDPEKR 864 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 ++ I + ++NDLLD+S+IE+G++ LH EP+ LD + A+ Q EK Sbjct: 865 RKFVAIIASEAERLTRMINDLLDLSRIEAGRLELHPEPLELDAVFARAVGTAQPLMAEKG 924 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + R +P++LAD + Q+ N+LSN++ F+P GG I + E ++ V D Sbjct: 925 LQSRVEIEAGLPQVLADADRMHQVLTNLLSNSVKFSPEGGTIRLG-GRRQGEFALISVTD 983 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 G G+ LE+ + F Q+ Q+ GTGLGL +++ +V+ G+ ++ S G + Sbjct: 984 QGPGIPADRLEQVFERFHQVRTPQKSHALGTGLGLTISREIVEKMGGRIWVESELGAGAV 1043 Query: 804 IEIIFPL 810 PL Sbjct: 1044 FSFTVPL 1050 >gi|37676593|ref|NP_936989.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] gi|37201136|dbj|BAC96959.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] Length = 1381 Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 84/266 (31%), Positives = 145/266 (54%), Gaps = 21/266 (7%) Query: 563 EWKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 E K++ L A+ + E++ S +KS+FLA +SHE+RTPL +I+ S++ N + Sbjct: 651 EMKEKNEALHQAQLVVEEKAKELEIASKYKSEFLANMSHELRTPLNSILILSQLFANNKD 710 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L + IE A I+ SG+ +L ++N++LD+SK+E+GK++LH E V L + + L Sbjct: 711 GNL-TAKQIESAKAINSSGSDLLSLINEILDLSKVEAGKIDLHIEDVPLQTVEQDLLRLY 769 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 Q A++K + + A N+P+ L D + ++QI N+L+NA FT G + ++ S Sbjct: 770 QDIADDKGLDFQVICAPNLPQTLETDAQRLQQILRNLLTNAFKFTHEGA-VTLNMALPSP 828 Query: 735 EE-----------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 E+ + V+D G+G+ + + F Q S + GTGLGL ++K Sbjct: 829 EQAKLLDKPREALIAFSVKDDGIGIKQEQQLAIFQAFQQADGSTSRKYGGTGLGLSISKE 888 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809 + G+ ++ S KG++ +IFP Sbjct: 889 LTHLLGGRIHLKSEEGKGSIFTVIFP 914 >gi|307717858|ref|YP_003873390.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] gi|306531583|gb|ADN01117.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] Length = 751 Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 135/255 (52%), Gaps = 9/255 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D E + +L AK+ AE+ + KS FLA +SHE+RTPL IIG SE++ + Sbjct: 339 DTEEIHAYQERLKEAKEEAERANRAKSAFLATMSHELRTPLNGIIGMSELLMSSGL---- 394 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + +EYA I +G +L ++ND+LDIS++ESGK+ + P L + + Sbjct: 395 SGELVEYARTIQTAGENLLALINDILDISQLESGKLKVERRPCDLKAVLLHVYKTLYPQT 454 Query: 680 NEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--- 735 K + A+ IP + ++D + Q+ N++ NAI FT S G++++ E Sbjct: 455 IHKNLRFVLEVASEIPAVVISDEARLSQVLFNLVGNAIKFT-SRGEVVLRVWMEEEEGRA 513 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 E++ +VRDTG+G+ EL + + F Q+ R +G+GLGL +AK +V+ G+ + Sbjct: 514 ELVFQVRDTGIGIPREELPRVFERFHQVDQGVTRRFQGSGLGLSIAKDLVELMGGRIDVE 573 Query: 796 STPAKGTLIEIIFPL 810 S KG+ + P Sbjct: 574 SEEGKGSCFTVRIPF 588 >gi|27366816|ref|NP_762343.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6] gi|27358383|gb|AAO07333.1|AE016809_95 Signal transduction histidine kinase [Vibrio vulnificus CMCP6] Length = 1370 Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 84/266 (31%), Positives = 145/266 (54%), Gaps = 21/266 (7%) Query: 563 EWKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 E K++ L A+ + E++ S +KS+FLA +SHE+RTPL +I+ S++ N + Sbjct: 640 EMKEKNEALHQAQLVVEEKAKELEIASKYKSEFLANMSHELRTPLNSILILSQLFANNKD 699 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L + IE A I+ SG+ +L ++N++LD+SK+E+GK++LH E V L + + L Sbjct: 700 GNL-TAKQIESAKAINSSGSDLLSLINEILDLSKVEAGKIDLHIEDVPLQTVEQDLLRLY 758 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 Q A++K + + A N+P+ L D + ++QI N+L+NA FT G + ++ S Sbjct: 759 QDIADDKGLDFQVICAPNLPQTLETDAQRLQQILRNLLTNAFKFTHEGA-VTLNMALPSP 817 Query: 735 EE-----------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 E+ + V+D G+G+ + + F Q S + GTGLGL ++K Sbjct: 818 EQAKLLDKPREALIAFSVKDDGIGIKQEQQLAIFQAFQQADGSTSRKYGGTGLGLSISKE 877 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809 + G+ ++ S KG++ +IFP Sbjct: 878 LTHLLGGRIHLKSEEGKGSIFTVIFP 903 >gi|99078583|ref|YP_611841.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040] gi|99035721|gb|ABF62579.1| two-component hybrid sensor and regulator [Ruegeria sp. TM1040] Length = 770 Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 139/259 (53%), Gaps = 11/259 (4%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E + + L HA++ AE S KS+FLA +SHEIRTP+ +IG +EV++ P Sbjct: 225 AERDEREKALEHAREQAEIASRAKSEFLANMSHEIRTPMNGVIGMAEVLRETEL----TP 280 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 Y I +SGN +L I+ND+L SKIE+GK+ L +L + + I L+ A E Sbjct: 281 DQELYTETIVKSGNALLSIINDILSFSKIEAGKLELTQATFNLRTVIEDVIMLLAPKAAE 340 Query: 682 KRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-- 738 K + + + ++ D ++QI N++ NA+ FT S G + I T + +++ Sbjct: 341 KWVQLTLRYDPDLAEFYDGDAGRIRQIVTNVVGNAVKFT-SRGSVHIDVTGVARGQLMDL 399 Query: 739 -LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V DTG+G+ +L++ F Q+ + EGTGLGL ++ ++ G+ ++ S+ Sbjct: 400 RISVVDTGIGIPAEKLDRIFHAFEQVDGAATRNFEGTGLGLAISTRLLQMMKGRIHVTSS 459 Query: 798 PAKGTL--IEIIFPLYDTS 814 KG++ I+I P D + Sbjct: 460 EGKGSVFTIDISLPTSDRA 478 >gi|219670690|ref|YP_002461125.1| histidine kinase [Desulfitobacterium hafniense DCB-2] gi|219540950|gb|ACL22689.1| histidine kinase [Desulfitobacterium hafniense DCB-2] Length = 561 Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 137/238 (57%), Gaps = 3/238 (1%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A + +++ +KSDFLA +SHE+RTPLT+II F+EV+ ++ P+ + Sbjct: 310 QLEEANRRLREDNQYKSDFLAIISHELRTPLTSIIAFAEVL--EKASEDKCPKEQKITQE 367 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I + ++L ++N++L+I++IE+GK L EP+ L + ++ S+++ +K I + Sbjct: 368 IRANSQVLLRMINNILEIARIEAGKQELIIEPIDLVDVINAVESVIEPLIEKKSIQYSSV 427 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVGM 748 +++P I D +++I N+LSNA+ FTP GG+I + + EV++ V+D G+G+ Sbjct: 428 LHSDVPVIEGDREGLRRIVENLLSNALKFTPEGGEIKVWVAYDQERNEVLINVQDNGIGI 487 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 + + F Q +S + G+GLGL LAK + + + G + S KG+L + Sbjct: 488 RKEDQPYIFEKFVQSDSSIHRQYNGSGLGLALAKELAELHGGWIKVVSELDKGSLFTV 545 >gi|186685728|ref|YP_001868924.1| multi-sensor hybrid multi-kinase [Nostoc punctiforme PCC 73102] gi|186468180|gb|ACC83981.1| multi-sensor hybrid multi-kinase [Nostoc punctiforme PCC 73102] Length = 2370 Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 77/217 (35%), Positives = 124/217 (57%), Gaps = 4/217 (1%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A+ AE + K +FLA +SHE+RTPL I+G+++++++++ + R +E I+R+ Sbjct: 1987 ARNAAESANRIKDEFLAVLSHELRTPLNPILGWTKLMRSRKLDQATSDRALET---IERN 2043 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 L ++ DLLD+S+I GK+NL+F P++L + AI V+L A K I I+T F Sbjct: 2044 AKLQTQLIEDLLDVSRILQGKLNLNFGPINLVSVIEAAIETVRLSAQAKSIEIQTIFEFG 2103 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 + +L D ++Q+ NILSNAI FTPS GQ+ I + +V + V DTG G+ L Sbjct: 2104 VGSVLGDANRLQQVIWNILSNAIKFTPSEGQVKIKLEQVGS-QVQICVTDTGKGIAPEFL 2162 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 F Q + + G GLGL + + +V+ + G Sbjct: 2163 PYVFDYFRQADGATTRQFGGLGLGLAIVRHLVELHGG 2199 >gi|320158700|ref|YP_004191078.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O] gi|319934012|gb|ADV88875.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O] Length = 1370 Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 84/266 (31%), Positives = 145/266 (54%), Gaps = 21/266 (7%) Query: 563 EWKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 E K++ L A+ + E++ S +KS+FLA +SHE+RTPL +I+ S++ N + Sbjct: 640 EMKEKNEALHQAQLVVEEKAKELEIASKYKSEFLANMSHELRTPLNSILILSQLFANNKD 699 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L + IE A I+ SG+ +L ++N++LD+SK+E+GK++LH E V L + + L Sbjct: 700 GNL-TAKQIESAKAINSSGSDLLSLINEILDLSKVEAGKIDLHIEDVPLQTVEQDLLRLY 758 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 Q A++K + + A N+P+ L D + ++QI N+L+NA FT G + ++ S Sbjct: 759 QDIADDKGLDFQVICAPNLPQTLETDAQRLQQILRNLLTNAFKFTHEGA-VTLNMALPSP 817 Query: 735 EE-----------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 E+ + V+D G+G+ + + F Q S + GTGLGL ++K Sbjct: 818 EQAKLLDKPREALIAFSVKDDGIGIKQEQQLAIFQAFQQADGSTSRKYGGTGLGLSISKE 877 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809 + G+ ++ S KG++ +IFP Sbjct: 878 LTHLLGGRIHLKSEEGKGSIFTVIFP 903 >gi|218886348|ref|YP_002435669.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757302|gb|ACL08201.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1101 Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 83/259 (32%), Positives = 132/259 (50%), Gaps = 9/259 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI+E K + +L +AK AE S KS+FLA +SHEIRTPL I+G +++ R G Sbjct: 667 TLQDITERKTAEIELLNAKLRAEAASKAKSEFLANMSHEIRTPLNGILGMLQLMHTTRLG 726 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 +YA+ +SG + +++D+LD+S+IESGK+++ P L AV + + L Sbjct: 727 ----AEQADYADIAIQSGRRLARLLSDMLDLSRIESGKLDIRHVPFQLAAAVQQVVELFL 782 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII----ISTTH 731 + + I + P +L D+ V+Q+ N+L N+ FT GG + + H Sbjct: 783 PISLQAGIRLDVRMDPTTPETLLGDIVRVQQVLTNLLGNSFKFTRIGGITLAVHRLPPPH 842 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 V+ + DTG G+ +L + +PF Q N + +G GLGL + K +V G+ Sbjct: 843 APACRVLFTISDTGCGIPEDKLGELFEPFTQASNGMRRSHQGAGLGLSICKRLVHLMGGE 902 Query: 792 FYIFSTPAKGTLIEIIFPL 810 I S GT + P Sbjct: 903 ITIESEEGAGTTACVSLPF 921 >gi|167629252|ref|YP_001679751.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] gi|167591992|gb|ABZ83740.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] Length = 662 Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 90/263 (34%), Positives = 140/263 (53%), Gaps = 24/263 (9%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 ++ E +Q + L AK+ A+ + KS FLA +SHEIRTP+ AIIG ++++ PL Sbjct: 345 ELQERRQMQTALQLAKEEADVANRAKSAFLANMSHEIRTPMNAIIGIADLLWET---PL- 400 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N ++ + +GN +L ++ND+LD+SKIESGK L LD V++ I+L A Sbjct: 401 NEEQKKFVHIFRDAGNNLLALINDILDLSKIESGKQVLQPVEFYLDNLVNDTIALFSTRA 460 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT-----------------PS 721 EK + + ++IPR +L D+ +++Q+ N+L NAI FT PS Sbjct: 461 QEKGLELTVRLPDDIPRLLLGDVGALRQVLFNLLGNAIKFTETGAVSLHIEVADPVVSPS 520 Query: 722 GGQIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 G + H + V LR V DTG+G+ ++ F Q+ S R GTGLGL Sbjct: 521 GATADPNPPHFPGQPVHLRFSVIDTGLGIPPEWQDRIFDSFTQVDASLTRRFGGTGLGLA 580 Query: 780 LAKAMVDANMGKFYIFSTPAKGT 802 + K +V+ G+ ++ S P KG+ Sbjct: 581 ICKRLVELMGGQIWVDSEPGKGS 603 >gi|239616520|ref|YP_002939842.1| histidine kinase [Kosmotoga olearia TBF 19.5.1] gi|239505351|gb|ACR78838.1| histidine kinase [Kosmotoga olearia TBF 19.5.1] Length = 559 Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 85/235 (36%), Positives = 130/235 (55%), Gaps = 4/235 (1%) Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 KI E E KS+FLA +SHE+RTPL +I GF +I G + N + + + S Sbjct: 313 KIKELER-LKSEFLATMSHELRTPLNSITGFVSMILQGISGEI-NEEQRKQLSMVHSSSI 370 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L+++ND+LDISKIE+G+M+ E ++ + +SE + V L ++K + + T + IP Sbjct: 371 HLLNLINDILDISKIEAGRMSFSKERFNIKDVISEVVQNVSLLISKKEVKLITEIPDEIP 430 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 I +D R V QI LN++SNAI FT G I ++ + V DTG G+ ++E Sbjct: 431 EIYSDKRRVFQILLNLVSNAIKFTEKGEVRI--KCEVDGNKLKISVSDTGKGIKEEDMET 488 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F QI S + R +G GLGL L+K +V G+ ++ S KG+ PL Sbjct: 489 LFEAFRQISGSARRRYQGAGLGLYLSKKLVTLLGGEIWVESEYGKGSTFTFTLPL 543 >gi|78776420|ref|YP_392735.1| multi-sensor hybrid histidine kinase [Sulfurimonas denitrificans DSM 1251] gi|78496960|gb|ABB43500.1| PAS/PAC sensor hybrid histidine kinase [Sulfurimonas denitrificans DSM 1251] Length = 1452 Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 139/247 (56%), Gaps = 8/247 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I++ ++K L AK+ AE+ ++ KS+FLA +SHEIRTP+ AIIGFSE++ Sbjct: 850 EITQDIRDKEALQEAKEEAERANNSKSEFLANMSHEIRTPMNAIIGFSEILLESDL---- 905 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + + + I+ S ++L I+ND+LD SKIE+ ++ + +L+ +S+ L + A Sbjct: 906 DEKQLHQLHKINSSSKMLLSIINDILDFSKIEANRLEIEHREFNLESILSKIKMLFKQTA 965 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNE 735 +K + + +P ++AD + Q+ +N+L NAI FT G + IS + Sbjct: 966 LDKGLEFYCNVEEGVPSMVVADELRITQVLINLLGNAIKFTKEGAVKVDLKISKKDEKSA 1025 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++ V D+G+G++ ++EK KPF Q +S R G+GLGL ++ +V A G+ + Sbjct: 1026 TLLFSVIDSGIGISQNQIEKLFKPFSQADDSITRRYGGSGLGLSISSRLVSAMGGEIDVK 1085 Query: 796 STPAKGT 802 S G+ Sbjct: 1086 SKEGVGS 1092 >gi|182413985|ref|YP_001819051.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177841199|gb|ACB75451.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 1204 Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 81/238 (34%), Positives = 128/238 (53%), Gaps = 12/238 (5%) Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHEIRTP+ +IG S ++ + PLG P EYA I S +L I+ND+LD+ Sbjct: 824 FLANMSHEIRTPMNGVIGMSNLLVDT---PLG-PEQQEYAQAIRHSAEALLAIINDILDV 879 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQ 706 SK+E+GK+ L LD+ V +A+SL++ A K + ++ + + P +L D V+Q Sbjct: 880 SKLEAGKLQLVPTEFRLDQLVEDAVSLLRPSATAKGLRLKAELSPELPPTLLGDANRVRQ 939 Query: 707 IALNILSNAIHFTPSGGQII------ISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKP 759 + LN++ NA+ FT GG + +T H S V + V DTG+G+ E+ +P Sbjct: 940 VLLNLIGNAVKFTEHGGVFVRVAPEPGATAHDSGPVSVRIEVADTGIGVPPEAAERLFQP 999 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 F Q S R GTGLGL +++ +V+ G+ + S G++ + + P Sbjct: 1000 FTQADESMTRRYGGTGLGLAISRQLVELMGGQIGVRSPETGGSVFWCVIAFERAAIPR 1057 >gi|39656325|gb|AAR29885.1| putative histidine kinase HHK6p [Cochliobolus heterostrophus] Length = 1364 Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 136/245 (55%), Gaps = 13/245 (5%) Query: 574 AKKIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A + A KE+S KS FLA +SHEIRTP+ +IG SE++ + N E A I R Sbjct: 724 ANEAAAKEASRMKSQFLANMSHEIRTPIAGVIGMSELLFDMDL----NEEQKECAENIHR 779 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI----LIRT 688 S N +L ++ND+LD SK+ESG++++ SL + + ++ AN K + LI+ Sbjct: 780 SANSLLTVINDILDFSKVESGRLDVEEVQFSLSVVLRDVNKMMAFAANRKGLEYQSLIQD 839 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTG 745 +++ R++ D ++QI N+L+N+I FT G Q+ +S +H + E V + + DTG Sbjct: 840 EVQSDL-RVIGDPGRLRQILTNVLTNSIKFTSVGTVQLSVSISHETKETVTVNFSIVDTG 898 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ ++ +PF Q +S R GTGLGL ++K +V+ G+ ++ S +GT Sbjct: 899 IGIEEEVRKRLFQPFSQADSSTARRFGGTGLGLTISKNLVELMKGQIWLDSKLGQGTTAT 958 Query: 806 IIFPL 810 P Sbjct: 959 FWIPF 963 >gi|291287961|ref|YP_003504777.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] gi|290885121|gb|ADD68821.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] Length = 1005 Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 92/272 (33%), Positives = 139/272 (51%), Gaps = 30/272 (11%) Query: 550 FSSCYSLTMHDISEWKQE----------KNK-LSHAKKIAEKESSHKSDFLARVSHEIRT 598 F + ++ T+ +EW+ E NK L+ A+ AE+ S KS FLA +SHEIRT Sbjct: 227 FVNTFNDTLEKRNEWENELTLINRQLLNTNKDLAKARDAAEQASKAKSSFLANMSHEIRT 286 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PL IIG ++++ + L N + +Y IDRS +L I+ND+LD+SKIE+GK+ + Sbjct: 287 PLNGIIGLTKLMLDLE---LSNKQK-DYMRKIDRSAKALLGILNDVLDLSKIEAGKLRID 342 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIH 717 + L + EK + + IP+ + D +KQ+ +N++SNA+ Sbjct: 343 NHDFVFESVFKSIDDLFTIKIEEKGLELFFEIDPEIPQHLTGDPLRIKQVLINLVSNAVK 402 Query: 718 FTPSGGQII---ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 FT G I ++ S+ ++ VRDTGVG+ ELEK F Q+ + R EGT Sbjct: 403 FTDEGEIHIKAEVTEITDSDISILFSVRDTGVGIPANELEKIFTAFTQVDETSTRRYEGT 462 Query: 775 GLGLPLAKAMV-----------DANMGKFYIF 795 GLGL + K +V D NMG + F Sbjct: 463 GLGLAITKNLVSMMGGTVTVESDINMGSIFSF 494 >gi|256822064|ref|YP_003146027.1| Hpt sensor hybrid histidine kinase [Kangiella koreensis DSM 16069] gi|256795603|gb|ACV26259.1| Hpt sensor hybrid histidine kinase [Kangiella koreensis DSM 16069] Length = 950 Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 137/237 (57%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A++ A + S K++FLA +SHEIRTP+ +IGF+E++ N + ++ Sbjct: 286 ELDIARRQALEASRIKTEFLANMSHEIRTPMNGVIGFTELLLKTEL----NNKQKDFLFD 341 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RS +L I++D+LD SKIE+GKM+ P L E V + ++ AN+K I + + Sbjct: 342 IKRSATSLLSIIDDILDYSKIEAGKMSFERYPFDLRECVDDIFRMLGPNANKKGIELVSL 401 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTG 745 +++P+ +L D +KQI N+++NAI FT SG + + + N++ + ++V+D+G Sbjct: 402 IYSDVPKALLGDPIRIKQIITNLVNNAIKFTKSGSVELYAEVESENQKGLKLKVQVKDSG 461 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+T + K F Q +S + GTGLGL ++K++V+ G + ST G+ Sbjct: 462 IGLTQEQQRNLFKAFSQADSSTKREFGGTGLGLVISKSLVEKMGGNIGVNSTAGDGS 518 >gi|254411336|ref|ZP_05025113.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181837|gb|EDX76824.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 789 Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 131/249 (52%), Gaps = 8/249 (3%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP-----RY 623 +L A + + + KS+FLA +SHE+RTPLT +IG S + G G+ + Sbjct: 401 QELRDALQATQAANHAKSEFLAAMSHELRTPLTCVIGLSATLLRWSLGEGGSKTVSIEKQ 460 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 Y I +G +L ++ND+LD S++E+GK L+ SL + + ++ A+ + Sbjct: 461 RRYLQTIQENGEHLLALINDILDFSQLEAGKAVLNINEFSLRYLAQQTLRSLKEKASSGQ 520 Query: 684 ILIRTSFANNIP--RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + + + P R AD R ++QI N+L NAI FTP+GGQ+ + N V ++ Sbjct: 521 VELILDWQVPTPKDRFQADPRRLRQILFNLLGNAIKFTPAGGQVTLRGWREQNRAV-FQI 579 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ ++ + F Q+ + Q EGTGLGL L + +V+ + G + ST KG Sbjct: 580 EDTGIGIPQEQIPLMFQKFQQLEKTYQRTYEGTGLGLALTQQLVELHGGTIDVESTVGKG 639 Query: 802 TLIEIIFPL 810 ++ + P+ Sbjct: 640 SIFTVRVPI 648 >gi|89897563|ref|YP_521050.1| hypothetical protein DSY4817 [Desulfitobacterium hafniense Y51] gi|89337011|dbj|BAE86606.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 564 Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 137/238 (57%), Gaps = 3/238 (1%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A + +++ +KSDFLA +SHE+RTPLT+II F+EV+ ++ P+ + Sbjct: 313 QLEEANRRLREDNQYKSDFLAIISHELRTPLTSIIAFAEVL--EKASEDKCPKEQKITQE 370 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I + ++L ++N++L+I++IE+GK L EP+ L + ++ S+++ +K I + Sbjct: 371 IRANSQVLLRMINNILEIARIEAGKQELIIEPIDLVDVINAVESVIEPLIEKKSIQYSSV 430 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVGM 748 +++P I D +++I N+LSNA+ FTP GG+I + + EV++ V+D G+G+ Sbjct: 431 LHSDVPVIEGDREGLRRIVENLLSNALKFTPEGGEIKVWVAYDQERNEVLINVQDNGIGI 490 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 + + F Q +S + G+GLGL LAK + + + G + S KG+L + Sbjct: 491 RKEDQPYIFEKFVQSDSSIHRQYNGSGLGLALAKELAELHGGWIKVVSELDKGSLFTV 548 >gi|218441977|ref|YP_002380306.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218174705|gb|ACK73438.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 1058 Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 83/247 (33%), Positives = 138/247 (55%), Gaps = 6/247 (2%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q +L+ AK+ AE + KS F+A +SHE+RTPL AI+GFS+++ P P + E Sbjct: 583 QRTAELAEAKEKAEVANQAKSRFIANMSHELRTPLNAILGFSQLMNRSTTLP---PEHQE 639 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I+RSG +L ++N++L ++KIE+GK +L+ L ++E + L A +K + Sbjct: 640 NIQIINRSGEYLLTLINNILTLAKIEAGKTSLNLSNFDLYSLLNEIEEIFYLAAKKKNLN 699 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILRVRD 743 + IP+ I D ++++ +N+LSNAI FTP G ++ + T ++ V+D Sbjct: 700 LTFERDKTIPQYIRTDEVKLREVLINLLSNAIKFTPRGDILVDVQTLSQKPITLLFTVKD 759 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TGVG+T EL+ F Q + + + EGTGLGL +++ V+ G+ + S A GT+ Sbjct: 760 TGVGITPEELDILFDAFSQTQSGKNSQ-EGTGLGLAISRQFVELMGGELTVDSQIAVGTI 818 Query: 804 IEIIFPL 810 P+ Sbjct: 819 FRFTLPV 825 >gi|332667143|ref|YP_004449931.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] gi|332335957|gb|AEE53058.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] Length = 871 Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 88/244 (36%), Positives = 134/244 (54%), Gaps = 15/244 (6%) Query: 566 QEKNKLSHAKKI-AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 Q+KN++ A+K AE K FLA +SHEIRTP+ AI G ++++ R P N Sbjct: 478 QQKNEIIEAEKENAENSERAKHQFLANMSHEIRTPMNAIKGMTDIL--IRRNP--NEDQK 533 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EY N I +S + +L I+ND+LDISKIE+GK+ L EP S+ E V+ +++Q A EK + Sbjct: 534 EYLNGIKQSSDSLLVIINDILDISKIEAGKVELEHEPFSVVELVNNVHTIMQFKAEEKGL 593 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI------ 738 + + D ++QI LN++ NAI FT G + TT +E+V Sbjct: 594 GLLKDIPTENLTVQGDATRLRQILLNLIGNAIKFTEKG----LVTTSVKSEQVGDKINVH 649 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG+G+ + K + F Q + + GTGLGL ++K +V+ + GK ++ S Sbjct: 650 FTVSDTGIGIDADRMGKIFESFEQAYSDTSRKFGGTGLGLSISKKLVELHNGKIWVESEK 709 Query: 799 AKGT 802 KG+ Sbjct: 710 GKGS 713 >gi|154687042|ref|YP_001422203.1| PhoR [Bacillus amyloliquefaciens FZB42] gi|154352893|gb|ABS74972.1| PhoR [Bacillus amyloliquefaciens FZB42] Length = 579 Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 106/374 (28%), Positives = 185/374 (49%), Gaps = 29/374 (7%) Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 VD R +++ +L +++E G+ +I+ G I NR+ +K F E +LR+ + Sbjct: 222 VDLMEMTRTQDMQRDRLLTVIENIGSGLILIDGRGFINLVNRSYTKQFHTKPERLLRRLY 281 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 E EI+ L +E I + TK+ +LL L I I++ F Sbjct: 282 HDAFEHE----------EIIRL-----VEDIFMTETKKCQLLRLPINIERRYFEVDGVPI 326 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 M EWK +I + E K DF+A VSHE++TP+T+I GF+E + + G Sbjct: 327 MGPDDEWKGIVLVFHDMTEIKKLEQMRK-DFVANVSHELKTPITSIKGFTETLLD---GA 382 Query: 618 LGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + + + ++ + I + + +V DLLD+SK+E + E + + E +L++ Sbjct: 383 MKDEKALSDFLSIILKESERLQSLVQDLLDLSKMEQQNFTMRVESFDAAKILHEIEALLR 442 Query: 677 LYANEKRILIRTSFANNIPR----ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 A EK I SF ++P + D +KQ+ LN+ +NA+ +TP G + IS H Sbjct: 443 HKAEEKGI----SFQLDLPEEPIFVTGDAHRLKQVFLNLANNALTYTPEKGTVGISV-HV 497 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 V ++V DTG+G+ E+ + + F ++ + GTGLGL + K +++A+ GK Sbjct: 498 KETVVDIKVSDTGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKI 557 Query: 793 YIFSTPAKGTLIEI 806 + S P +GT+ + Sbjct: 558 EVTSEPGQGTVFTV 571 >gi|189426568|ref|YP_001953745.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189422827|gb|ACD97225.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1287 Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 86/268 (32%), Positives = 142/268 (52%), Gaps = 12/268 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E ++ ++L AK+ AE + KS+FLA +SHEIRTPL AIIGF+ + + Sbjct: 640 DITESRRIADELRRAKEEAEAGNRSKSEFLANMSHEIRTPLNAIIGFNTLALETQL---- 695 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + +Y + ++ + +L I+N++LD SKIE+GK+ + E + I+L Q A Sbjct: 696 TAQQHDYLSRVNFAATSLLRIINEILDFSKIEAGKLEFEHAVFNPREVLQNIINLFQQQA 755 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV 737 K + + ++N+P ++ D + Q+ +N++ NA+ FT G + S T E V Sbjct: 756 AHKGLSLELHCSDNLPAELVGDSVRLGQVLVNLVGNAVKFTEQGAVSLYASPTEYGCENV 815 Query: 738 ILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 L VRDTG+G+ +L K +PF Q S + GTGLGL ++K +V+ G + Sbjct: 816 TLEFSVRDTGIGLAPDKLTKLFQPFTQADGSITRKFGGTGLGLSISKRIVELTGGHIWAE 875 Query: 796 STPAKGTL----IEIIFPLYDTSHPHDC 819 S P G++ + FP ++ C Sbjct: 876 SEPGYGSVFSFNMPFSFPAAGSAAARQC 903 >gi|294508549|ref|YP_003572608.1| probable sensor/response regulator hybrid protein, [Salinibacter ruber M8] gi|294344878|emb|CBH25656.1| probable sensor/response regulator hybrid protein, putative [Salinibacter ruber M8] Length = 588 Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 90/265 (33%), Positives = 133/265 (50%), Gaps = 8/265 (3%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI---KNQR 614 + D++E ++ K L A++ E+ KS LA ++HEIRTPLTAIIGF+E I ++ Sbjct: 305 LEDVTEQERRKQALRRAEEEIEEADRLKSALLANMNHEIRTPLTAIIGFAEAIGTTASEM 364 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P P YA+ I++SG +LD D+LD+S++E+G+M L E V L E A+ Sbjct: 365 DLPEHTP-LTGYADLIEQSGKRLLDTFEDILDLSQLEAGQMELGIETVDLAEQARRAVQE 423 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A +K I +R + R A+ V+ N+L NAI +T GG + + T Sbjct: 424 CGANAQDKEIDVRLEATSVSAR--ANENGVQVALQNLLDNAIKYTADGGTVWVRTRPEPG 481 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V L V D G GM +++ +PF Q EG G+GL + K G + Sbjct: 482 RAV-LEVEDDGAGMEPETVDQLFEPFRQASTGMAREYEGAGVGLAVTKEATKQMGGAIEV 540 Query: 795 FSTPAKGTLIEIIFPLYDTSHPHDC 819 + P G+ I FP+ D S HDC Sbjct: 541 ETKPGAGSRFLIRFPMADHST-HDC 564 >gi|255021586|ref|ZP_05293629.1| multi-sensor hybrid histidine kinase [Acidithiobacillus caldus ATCC 51756] gi|254968974|gb|EET26493.1| multi-sensor hybrid histidine kinase [Acidithiobacillus caldus ATCC 51756] Length = 1018 Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 78/270 (28%), Positives = 147/270 (54%), Gaps = 10/270 (3%) Query: 550 FSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 FS+C + T+ +Q + +L +K+ AE+ + KS FL+ +SHE+RTPL +I+GF+ Sbjct: 587 FSTCAIMIVTLRQREAQRQYEQRLVESKEQAERANQAKSQFLSSMSHELRTPLNSILGFA 646 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 +++ R PL +PR + +I +G +L ++ND+L++++IE+G++ E +SL Sbjct: 647 QLLSTSRREPL-SPRQQGFVEHIRDAGQHLLSLINDVLNLARIEAGELTFSPEVLSLAAL 705 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 + E +V A E+ + + + ++ + DL +QI LN+LSNAI + GG+++I Sbjct: 706 LRETSEMVADLARERDVQLLETLGDDPLWVCVDLTRTRQILLNLLSNAIKYNRPGGRVLI 765 Query: 728 STTHTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 + E + + + DTG+G+ + +PF ++ + EGTG+GL + Sbjct: 766 RSLAPIPERAERPVCLGIAISDTGIGIPADRQHRLFRPFERL-GQENGPIEGTGIGLMIT 824 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 K +V+ G+ S +GT + P + Sbjct: 825 KELVERMGGEIRFESREGEGTTFFVFLPAH 854 >gi|327537864|gb|EGF24566.1| signal transduction histidine kinase with CheB and CheR activity [Rhodopirellula baltica WH47] Length = 1637 Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 80/258 (31%), Positives = 144/258 (55%), Gaps = 7/258 (2%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +T DI Q +N+L AK A+ + KS FLA +SHE+RTPL+AI+GF+++++ Sbjct: 1228 VTFVDIETRLQVENELREAKLAADAANEAKSHFLANMSHELRTPLSAILGFTKILQEDP- 1286 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 EY + I R+G+ +L ++ D+LD+S+IE+ K VSL E +++ + Sbjct: 1287 ---DEGTIQEYLSTIQRNGDYLLRLLGDVLDLSRIEANKFTTATSSVSLGELLADIFETM 1343 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS 733 ++ + + + + +PR I D ++QI +N+++NAI FTP G ++++ + Sbjct: 1344 KMRTQDYQNTLHFDVSEPLPRTITTDSARLRQIMINLIANAIKFTPKGRVEVVVRSEKID 1403 Query: 734 NEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++ ++L+V D G+G+ + +L +PF Q + R GTGLGL + K + +A G Sbjct: 1404 DDSFLLLKVIDDGIGIADEKLRTLFEPFVQADATISNRFGGTGLGLSITKRLTNALGGTI 1463 Query: 793 YIFSTPAKGTLIEIIFPL 810 + ST +G+ I P+ Sbjct: 1464 QVSSTEGEGSEFTIRLPV 1481 >gi|255082071|ref|XP_002508254.1| predicted protein [Micromonas sp. RCC299] gi|226523530|gb|ACO69512.1| predicted protein [Micromonas sp. RCC299] Length = 430 Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 138/243 (56%), Gaps = 5/243 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T D+++ + K ++ AK+ +E KS FLA +SHEIRTPL AII SE++ + Sbjct: 6 TARDVTDEYKSKLQMKEAKEKSEAMVIAKSSFLANMSHEIRTPLNAIIAGSELLS---YI 62 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P E + + R+ + +L +V+D+LD SKIE+ K+ L+ +P S++ + ++ + Sbjct: 63 PDLTAEQRELTDMVIRTSHTLLALVSDVLDFSKIEAEKLALNVKPFSIESCIDLSLEMQS 122 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 + AN KR+++ A+N+P R+L D ++Q+ N++SNA+ FTP G ++ I + + Sbjct: 123 IKANNKRLVLNYCIASNVPQRLLGDDMRIRQVVTNLISNAVKFTPKGSVELKIRPSSGDS 182 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 ++ V DTGVG+ + + F Q+ +S+ +GTGLGL + +V G + Sbjct: 183 VTLLFEVIDTGVGIPPDDQSELFTAFHQVNSSRTRSQQGTGLGLAICLKLVRLMQGDMSL 242 Query: 795 FST 797 S+ Sbjct: 243 VSS 245 >gi|162452262|ref|YP_001614629.1| protein kinase [Sorangium cellulosum 'So ce 56'] gi|161162844|emb|CAN94149.1| Protein kinase [Sorangium cellulosum 'So ce 56'] Length = 2003 Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 82/254 (32%), Positives = 130/254 (51%), Gaps = 9/254 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ +L AK+ AE+ S KSDFL+ +SHE+RTPL I+G +++++ P P + Sbjct: 1510 KERTVELRIAKEAAERASQAKSDFLSSMSHELRTPLNGIMGHAQILERT---PDVPPAWR 1566 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E I +S +L ++NDLL ++KIE+GKM+ L V + L ++ A K I Sbjct: 1567 EGLRVIQKSSEHLLSLINDLLHLAKIEAGKMDSVLTEFRLPALVRTVVDLCRVRAEAKGI 1626 Query: 685 LIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQI----IISTTHTSNEEVIL 739 + + AD + + Q+ LN+L NAI FT GG ++ T + V Sbjct: 1627 TFSDELRGPALQAVCADEKRLMQVLLNLLGNAIKFTERGGVSLHVEVLEETVPAGRMVRF 1686 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 R+ DTG G+ L + +PF Q+ Q + EGTGLGL + K +V G + S Sbjct: 1687 RIEDTGPGIAPEHLSRIFEPFEQV-GEQSAKSEGTGLGLAITKKLVQQMGGAIEVQSEVG 1745 Query: 800 KGTLIEIIFPLYDT 813 +G++ + PL + Sbjct: 1746 EGSVFAVTLPLAEA 1759 >gi|189423659|ref|YP_001950836.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189419918|gb|ACD94316.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 581 Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 99/367 (26%), Positives = 179/367 (48%), Gaps = 28/367 (7%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 K+ E +L +IL +G+ + + +G I+ N A K FG P E + +P Sbjct: 238 KLTSEQQRLAAILRGMGEGVMVTDTKGNIILVNPAFRKQFGLPGE-VEGRPLVEVCRH-- 294 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 P ++ + + S D + +IT+ T L++ + + + + HDIS+ K Sbjct: 295 PDLLQAFEEQRESGD--EVSCEITIPITNL-VLMAHWVPLTRDSGNRGTVAVFHDISDLK 351 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF--GPLGNPRY 623 + + + DF+A VSHE+RTP+ I G+ E + + P + R+ Sbjct: 352 --------------RVETMRRDFVANVSHELRTPVAVIKGYGETLLDGALEESPERSRRF 397 Query: 624 IEY-ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +E ++ +R NL+ ND+L +SK+E+ L P+ L + +A L++ +A K Sbjct: 398 VEIIVSHAERLTNLI----NDILTLSKLEARDAALTLHPLDLCGTIRKAQMLMEDHARSK 453 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 I I + +P++LAD ++Q+ LN+L NAI +TP GG + ++ E V++ V Sbjct: 454 GIRIAAECPDGMPKVLADQGQLEQVLLNLLDNAIKYTPDGGDVTVA-ARLEQERVVVAVS 512 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ +L + + F ++ + GTGLGL + K +V + G+ + S KG+ Sbjct: 513 DTGIGIPARDLPRIFERFYRVDEGRSREQGGTGLGLAIVKHIVQLHGGEVQVASEAGKGS 572 Query: 803 LIEIIFP 809 + P Sbjct: 573 TFTVTLP 579 >gi|332712356|ref|ZP_08432283.1| PAS domain S-box protein [Lyngbya majuscula 3L] gi|332348830|gb|EGJ28443.1| PAS domain S-box protein [Lyngbya majuscula 3L] Length = 965 Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 79/240 (32%), Positives = 134/240 (55%), Gaps = 9/240 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS F++ +SHE+RTP+ AIIGFS+++ QR G L + + ++ + +L L ++ D+ Sbjct: 703 KSQFVSTISHELRTPMNAIIGFSQLLLRQRQGSLTHQQADIMERIVNNAQHL-LTLIKDM 761 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI--LIRTSFANNIPRILADLR 702 +D+SKIE+ + L E + LD + E I+ + A +K + I+T+ N P ++ D Sbjct: 762 IDLSKIEAVCLELTLESLHLDRLIKETINEFRCLAAQKDLGLYIQTNLKN--PIVINDSL 819 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 ++QI +N++SN I FT G ++ + S + ++L VRDTG+G+ +LE + F Q Sbjct: 820 RLRQILVNLVSNGIKFTEMG-RVEVVVKEISTDWLMLTVRDTGIGIAENDLEHIFEEFQQ 878 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL---YDTSHPHDC 819 I + + GTGLGL + +++V G + S KG+ + FP T HDC Sbjct: 879 IDQTTTRKYSGTGLGLAITESLVKLMQGTITVESKLGKGSTFHVKFPRRVKASTGDCHDC 938 >gi|300023813|ref|YP_003756424.1| multi-sensor signal transduction histidine kinase [Hyphomicrobium denitrificans ATCC 51888] gi|299525634|gb|ADJ24103.1| multi-sensor signal transduction histidine kinase [Hyphomicrobium denitrificans ATCC 51888] Length = 836 Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 123/506 (24%), Positives = 232/506 (45%), Gaps = 38/506 (7%) Query: 325 TVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 T+D+ ++S H FY N +F K S+D +A S + +L + ++ Sbjct: 337 TLDRVETAVAIFSPDHKLAFY-NAAF---AKLWSLDTDWLASNPSDNVILDRLREIGVLE 392 Query: 383 PVMLYRSDRTCIAASARLHT---IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 PV+ +R + + A + T WN + + + ++ + + + E ++ Sbjct: 393 PVVNHRDWKAQVLACYQTGTPFDDTWNLTDGRILHVMAEQRPDGGVTFLFADETERLSLE 452 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP---------VE 490 +R N I+V + L + +G+A+ G + N+A ++ V Sbjct: 453 SRYNAL---IDVQR--ETLNSLKEGVAVFGTNGRLKLFNKAFCNIWHMQQKRLAELPHVG 507 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 +++ T+ +T + H +T L D R+T G + + + + LP Sbjct: 508 EVIAAAQTLHPNNDTWRRIGHAVTAFL--DERETFS----GQMTRDDGVVVDYALMPLPD 561 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + +T D+++ K+ + L + K++F+ +S+E+RTPL +IIGFSE++ Sbjct: 562 GATL-MTFADVTDAKRAERALVERNEALVAADRLKTNFIGHISYELRTPLNSIIGFSEML 620 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + FG L N + EY I S +L I+ND+LD++ I++G M L PV + + Sbjct: 621 ASPLFGDL-NAKQREYLADIMSSSKTLLAIINDILDLATIDAGAMQLKPTPVGVRALIDA 679 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 AI ++ A R+ I + A+ + +AD ++Q+ N+LSNA+ F+ G + ++ Sbjct: 680 AILGIRERAVRNRLTIEIAVADEVNEFVADEARMRQVLYNLLSNAVGFSKVNGTVRLA-C 738 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + N +I RV D GVG+ + + F + R G GLGL + K++V+ + G Sbjct: 739 WSENGTIIFRVEDDGVGIPKDRIGRIFDRFESQSHGSDHR--GAGLGLSIVKSLVELHGG 796 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHP 816 +FS +GT + + P HP Sbjct: 797 TIEVFSEENRGTRVTVRLP----EHP 818 >gi|218439784|ref|YP_002378113.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218172512|gb|ACK71245.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 1478 Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 141/251 (56%), Gaps = 9/251 (3%) Query: 565 KQEKNKLSHAKKIAEKESSH----KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ++E+ +L +K+A +E+ K +FLA +SHE+R+PL I+G+++++++ F Sbjct: 1082 QEEQKRLLEREKLAREEAERVNRIKDEFLAVLSHELRSPLNPILGWAQLLRSGSFDKANQ 1141 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + +E I+R+ L ++ DLLD+S+I GK++L+ ++L + AI V+L A Sbjct: 1142 NKALEI---IERNAKLQAQLIEDLLDVSRILRGKLSLNVTQLNLFFPIQGAIETVRLSAQ 1198 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K I I+T+ A ++ +I D ++QI N+LSNAI FTP GGQI I N + + Sbjct: 1199 AKSIEIKTNLATDVVQISGDAGRIQQIVWNLLSNAIKFTPEGGQIEIGLEQV-NHQAQIT 1257 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA- 799 V+D+G G+ L + F Q ++ + G GLGL + + +V+ + G +S Sbjct: 1258 VKDSGKGIDPQFLPHVFEHFRQADSTTTRKFGGLGLGLAIVRHLVEMHGGTVSAYSAGEN 1317 Query: 800 KGTLIEIIFPL 810 +G+ + FPL Sbjct: 1318 QGSTFIVQFPL 1328 >gi|332702589|ref|ZP_08422677.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552738|gb|EGJ49782.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 974 Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 87/258 (33%), Positives = 139/258 (53%), Gaps = 16/258 (6%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ D++ K + +L AK+ AE S KS+FLA +SHEIRTPL I+G +E+ R G Sbjct: 424 TVQDVTRQKLLERELVRAKEAAEAGSRVKSEFLANMSHEIRTPLNGILGMTEL--TLRTG 481 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 R EY + + S + + +V D+LD S+IE+GK+ L + L E + A+ ++ Sbjct: 482 LTREQR--EYLSMVKASADALATLVGDILDFSRIEAGKLELERKDFRLREILQAALKPME 539 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII----ISTTH 731 + A K + + +P L D ++Q+ LN++SNAI FTPSGG I +T+H Sbjct: 540 MQAEAKGLHLTLRIDPAVPEHLHGDAGRLRQVLLNLVSNAIKFTPSGGIDIDVLPTATSH 599 Query: 732 TSNE-------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 T + E++ V DTG+G+ E+ F Q +S + EGTGLGL +++ + Sbjct: 600 TPSGQEPDHKFELLFSVADTGIGIDTQLQERVFDIFTQGDSSLSRQYEGTGLGLAISRQL 659 Query: 785 VDANMGKFYIFSTPAKGT 802 V+ G ++ S +G Sbjct: 660 VELMGGAIWVESAIGQGA 677 >gi|94264870|ref|ZP_01288645.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93454691|gb|EAT04956.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 1211 Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 86/242 (35%), Positives = 134/242 (55%), Gaps = 11/242 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS+FLA +SHEIRTP+ AIIG ++ +K+Q P PR +Y I S +L ++ND Sbjct: 414 KSEFLANMSHEIRTPMNAIIGLGQLALKSQ---PPPPPRLHDYLEKITGSAATLLTLIND 470 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702 +LD SKIE+GK+ + P L E +++ L+ A EK + + + + PR ++ D Sbjct: 471 ILDFSKIEAGKLAIDQVPFDLSEILNQLDHLMAGQAAEKGLELLFAVDSGAPRQLVGDPH 530 Query: 703 SVKQIALNILSNAIHFTPSGGQIIIS--TTHTSNEEVILRV--RDTGVGMTNYELEKAMK 758 + Q+ +N+ SNAI FT G ++ IS + + +ILRV RDTG+GM+ ++E+ + Sbjct: 531 RLGQVLINLTSNAIKFTQQG-EVTISFEVADPTADPLILRVAVRDTGIGMSPEQIERIFQ 589 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 PF Q + + GTGLGL +A +V G+ + STP G+ L PH Sbjct: 590 PFTQADGATTRKHGGTGLGLSIAGRLVKLLGGEIRVESTPGAGSTFSFTC-LLGRHEPHK 648 Query: 819 CI 820 + Sbjct: 649 AL 650 >gi|149911169|ref|ZP_01899794.1| putative two-component sensor [Moritella sp. PE36] gi|149805770|gb|EDM65767.1| putative two-component sensor [Moritella sp. PE36] Length = 544 Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 93/269 (34%), Positives = 145/269 (53%), Gaps = 9/269 (3%) Query: 553 CYSLTMHDISEWKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 C SL ++ + KN KL + K I E+ + KS FLA +SHEIRTP+ I+G +++K Sbjct: 138 CTSLKKLLETKKNELKNRKLQNEKAILEESNKLKSLFLATISHEIRTPMNGILGIVQLLK 197 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + PL N + +RS +L+ I+ND+LD S++E+GK+ L+ ++ E+V + Sbjct: 198 DT---PLNNQQVEMLDTITNRSDDLI-TILNDILDYSQLETGKVALNEVDFNVIESVEDV 253 Query: 672 ISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIII--- 727 + A+ K + I T+F N+ P I D+ +KQI N++ NA+ FT G II Sbjct: 254 VKRFSAAAHLKGLSITTAFDNSTPVIFKGDVERIKQILSNLVHNAVKFTQVGEINIIVNF 313 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 T TS +V + V+DTG+G++ + +PF Q NS GTGLGL ++ + A Sbjct: 314 EETATSFYQVNIIVKDTGIGISKIAQKNLFQPFTQADNSMSRTFGGTGLGLAISANLTKA 373 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 G + S KGT + PL T +P Sbjct: 374 MNGTISVESEELKGTAFLLSIPLKTTQNP 402 >gi|160896184|ref|YP_001561766.1| PAS/PAC sensor signal transduction histidine kinase [Delftia acidovorans SPH-1] gi|160361768|gb|ABX33381.1| PAS/PAC sensor signal transduction histidine kinase [Delftia acidovorans SPH-1] Length = 841 Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 84/254 (33%), Positives = 134/254 (52%), Gaps = 12/254 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL- 618 D+SE++ ++ A+ AE+ KS+F+A +SHE+RTPL +I+GF+E G L Sbjct: 583 DVSEFRAAEHATHEARDAAEEAFRVKSEFVANMSHELRTPLQSIMGFAE------LGGLR 636 Query: 619 --GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 GN E + I +G +L +VNDLLD++K+ES +H E L + + ++ Sbjct: 637 SHGNAAMAEMFSDIHAAGQRMLALVNDLLDVAKLESAVGTIHLERTDLRSLIRPVVRELE 696 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K I +R ++ P I AD +Q+ N+L+NAI F+P GG+I + Sbjct: 697 PQQQHKLIDLRLEL-DDTPLIAKADPVRFQQVVRNVLANAIKFSPIGGRIDVQGRIDGQG 755 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++ + V D G G+ EL+K +PF Q ++ G GTGLGL + + ++DA G Sbjct: 756 DICIAVSDQGPGIPPQELDKIFQPFVQSSKTKNGSG-GTGLGLAICRKIIDAMDGTIVAS 814 Query: 796 STPAKGTLIEIIFP 809 + PA G + I P Sbjct: 815 NGPAGGAMFCITLP 828 >gi|186681899|ref|YP_001865095.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186464351|gb|ACC80152.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 444 Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 147/252 (58%), Gaps = 14/252 (5%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E +QE+ ++ + K + + S KS FLA +SHE+RTP+ AIIGFS+++ +FG L N Sbjct: 154 ERQQEQIQMQNFKLL--EASRLKSHFLATMSHELRTPMNAIIGFSQILLRPKFGQLSN-- 209 Query: 623 YIEYANYIDR---SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + A+ ++R +G +L ++N++LD SK+E G+++L E + + ++ A+ ++ A Sbjct: 210 --QQADMVERILNNGKHLLMLLNEVLDFSKLEIGRLDLKAEIFDVSKVINLAVGEMRSLA 267 Query: 680 NEKRI--LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 + K++ L++ N P I D ++QI N+LSNAI FT S G+I + +V Sbjct: 268 DAKKLSLLVQNDLQN--PFIFNDPVRIRQILTNLLSNAIKFTES-GEIWVEVKELPTNQV 324 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + VRDTG+G+ + + ++ + F Q+ + + GTGLGL + ++V GK ++ S Sbjct: 325 AIIVRDTGIGIASRDFKRIFEAFRQVDQTITRKYPGTGLGLAIVDSLVRMMGGKIFLESK 384 Query: 798 PAKGTLIEIIFP 809 G++ +I P Sbjct: 385 LGIGSMFKIELP 396 >gi|304397529|ref|ZP_07379407.1| integral membrane sensor hybrid histidine kinase [Pantoea sp. aB] gi|304355147|gb|EFM19516.1| integral membrane sensor hybrid histidine kinase [Pantoea sp. aB] Length = 950 Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 84/258 (32%), Positives = 136/258 (52%), Gaps = 7/258 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 446 DVSARVRMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PSG 504 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + N S +L+L I++D+LD SKIES ++ + P + E V+ + Sbjct: 505 IDSLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPRPFAPREIVTHIVGNYLSLV 561 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +KR+ + +++P++L D ++Q+ N+L+NAI FT +G II + + + Sbjct: 562 VKKRLTLYCFIEHDVPQVLDGDPLRLQQVISNLLNNAIKFTHTG--CIILHAYVAQGYLA 619 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 RVRDTGVG+ EL + PF Q+ N Q +GTGLGL + + +++ G + S P Sbjct: 620 FRVRDTGVGIPAKELPRLFDPFFQVGNGVQRNFQGTGLGLAICEKLINMMDGDIEVDSEP 679 Query: 799 AKGTLIEIIFPLYDTSHP 816 G+ + P+Y P Sbjct: 680 GMGSQFIVRIPIYQGQKP 697 >gi|302878534|ref|YP_003847098.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302581323|gb|ADL55334.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 963 Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 138/255 (54%), Gaps = 8/255 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H E + ++L A+ AE + KS FLA +SHE+RTPL A++GFS +++ PL Sbjct: 484 HLEEEVQSRTSELVLARNAAETANLAKSVFLANMSHELRTPLNAVLGFSSLLRKD---PL 540 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + N I+RSG +L ++ND+L+++KIE+G + L P+ L V + ++Q+ Sbjct: 541 LSKEQRTNLNIINRSGEYLLALINDVLEMAKIEAGWVQLDSAPLDLGMLVRDVTDMMQVR 600 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--HTSNE 735 A EK + + ++ PR I D ++QI +N++ NA+ FT GG + +T+ Sbjct: 601 AQEKGLQLLIDQSSEFPRYIRGDEARLRQILINLVGNAVKFTQQGGVTVRFGLKPNTTPA 660 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +++ V DTG G+ + EK +PF Q+ + +GTGLGL + + V G + Sbjct: 661 HLLIEVEDTGSGIAAEDQEKIFEPFVQV--GEVAMQKGTGLGLTITRQFVQLMGGSVTLN 718 Query: 796 STPAKGTLIEIIFPL 810 S P G+L + P+ Sbjct: 719 SKPGSGSLFRVELPI 733 >gi|262195164|ref|YP_003266373.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262078511|gb|ACY14480.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 650 Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 81/263 (30%), Positives = 140/263 (53%), Gaps = 24/263 (9%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DISE KQ + +L AK+ AE + KS+FLA +SHE+RTPL IIGF +++ + Sbjct: 232 DISELKQAEAELRAAKEQAEAAARVKSEFLATISHEMRTPLHGIIGFGDLLAHSHL---- 287 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +P+ + + + S L+ +++D+LD+++IE+G+M+ + L+ ++ ++ A Sbjct: 288 DPQQRGFLDSLRESARLLFRLISDVLDLAQIEAGRMHFEDRAMDLEALIARVRDVIAFQA 347 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG-------------GQI 725 EKR+++ +PR L D ++Q+ +N+L NA+ FTP+G G+ Sbjct: 348 AEKRLVLEAQLDPELPRHLRGDALRIEQVLVNLLGNALKFTPAGRVSLRVRCVPECAGED 407 Query: 726 IISTTHTSNE------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 + + + VRDTGVG+++ L +PF Q+ S G+GLGL Sbjct: 408 ALECASAAGRCLGDVHRLRFEVRDTGVGISSDRLNILFEPFTQLDTSASRAIGGSGLGLA 467 Query: 780 LAKAMVDANMGKFYIFSTPAKGT 802 + K +V+ G + STP KG+ Sbjct: 468 ICKRLVEGMGGVIGVASTPGKGS 490 >gi|32473151|ref|NP_866145.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32397830|emb|CAD73831.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 1637 Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 80/258 (31%), Positives = 144/258 (55%), Gaps = 7/258 (2%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +T DI Q +N+L AK A+ + KS FLA +SHE+RTPL+AI+GF+++++ Sbjct: 1228 VTFVDIETRLQVENELREAKLAADAANEAKSHFLANMSHELRTPLSAILGFTKILQEDP- 1286 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 EY + I R+G+ +L ++ D+LD+S+IE+ K VSL E +++ + Sbjct: 1287 ---DEGTIQEYLSTIQRNGDYLLRLLGDVLDLSRIEANKFTTATSSVSLGELLADIFETM 1343 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS 733 ++ + + + + +PR I D ++QI +N+++NAI FTP G ++++ + Sbjct: 1344 KMRTQDYQNTLHFDVSEPLPRTITTDSARLRQIMINLIANAIKFTPKGRVEVVVRSEKID 1403 Query: 734 NEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++ ++L+V D G+G+ + +L +PF Q + R GTGLGL + K + +A G Sbjct: 1404 DDSFLLLKVIDDGIGIADEKLRTLFEPFVQADATISNRFGGTGLGLSITKRLTNALGGTI 1463 Query: 793 YIFSTPAKGTLIEIIFPL 810 + ST +G+ I P+ Sbjct: 1464 QVSSTEGEGSEFTIRLPV 1481 >gi|171059399|ref|YP_001791748.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170776844|gb|ACB34983.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 1255 Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 83/274 (30%), Positives = 144/274 (52%), Gaps = 13/274 (4%) Query: 537 KLLSLRIIIKKLPF--SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 + L R + LP + Y L + D+++ ++ +L A+ +AE S KS F+A +SH Sbjct: 548 RWLRQRTRTRVLPGGETRVYGL-LDDVTDERERALQLQAARDVAEAASQAKSQFMASMSH 606 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 EIRTP+ I+G +E++ R + R +A + RSG +L+I+ND+LD SKIE+G+ Sbjct: 607 EIRTPMNGILGMTELLLGTRL----DDRQRRFAQAVYRSGENLLEIINDVLDFSKIEAGR 662 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILS 713 + L +L + + + L+ A+EK + + ++P +LAD ++Q+ N+++ Sbjct: 663 LELAPTDFNLRTLIEDTLDLLAPRAHEKGLELSFRETGDVPANVLADPLRLRQVLTNLVA 722 Query: 714 NAIHFTPSGG-----QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 NA+ FT G + + + + RVRDTG+GM L + F Q Sbjct: 723 NAVKFTEHGEVTVDLRFLPRPRAGAPAMLEFRVRDTGIGMAAELLPRLFTAFTQAHGGMA 782 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 R GTGLGL +++ +V+ G+ + S P G+ Sbjct: 783 RRYGGTGLGLAISRQLVELMGGQIDVVSQPGVGS 816 >gi|94266210|ref|ZP_01289919.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE [delta proteobacterium MLMS-1] gi|93453217|gb|EAT03675.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE [delta proteobacterium MLMS-1] Length = 794 Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 86/261 (32%), Positives = 142/261 (54%), Gaps = 13/261 (4%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI--KNQR 614 + DI+ K+E+ +L A+ A+ + KS+FLA +SHE+RTPL AIIG+SE++ + + Sbjct: 534 VIFDITNRKREERELVEARDAAKAANQAKSNFLANMSHELRTPLNAIIGYSEILLEEAEE 593 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 G G I+ I + +L ++N++LD SK ESG+++L E LDE ++ + + Sbjct: 594 HGLEGCAEDIQ---RIREAARHLLGLINEVLDFSKTESGRISLTMEECDLDELLAAVVDI 650 Query: 675 VQ--LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST--- 729 ++ L E R+L+ + I D ++QI N+LSNA FT G I + T Sbjct: 651 IRPLLPERENRLLVEAE--EELGTIRTDGTRLRQILYNLLSNAAKFTEK-GFITLRTRRL 707 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 E V + ++DTG+G++ + +K KPF Q +S R GTGLGL +++ Sbjct: 708 MRDGGEWVEIDIQDTGIGISEEQQKKLFKPFTQADSSISRRFGGTGLGLAISRYFCRMMG 767 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G + STP +G+ + P+ Sbjct: 768 GDIALVSTPGQGSTFTVSLPV 788 >gi|327541868|gb|EGF28379.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47] Length = 601 Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 81/238 (34%), Positives = 127/238 (53%), Gaps = 12/238 (5%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K+DFLA +SHE+RTPL +IIGFSEV+ Q L + YA+ I +SG L+L+++ND+ Sbjct: 350 KTDFLANMSHELRTPLNSIIGFSEVL--QGIDSLSEKQR-RYASNIQKSGRLLLEMINDI 406 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD++K+E+GKM + L V ++Q + +K I + +++P D + Sbjct: 407 LDLAKVEAGKMEVRRSEFQLSRLVGAQCDMIQSLSEDKNISLSVEVPDDLPVAYQDPNKL 466 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 QI N+LSNAI FTP GG I + ++ L V DTGVG+ + + + F Q Sbjct: 467 GQILNNLLSNAIKFTPEGGMITVRVVDLHDDRFRLSVTDTGVGVADEDQPIIFQKFRQ-- 524 Query: 765 NSQQIRGE-------GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 + + + G+ GTGLGL + K + G+ S +G+ +I P + H Sbjct: 525 SKKVLDGDGLTREFAGTGLGLSIVKELAVLLGGEIDFQSELGRGSTFWVILPYRLSDH 582 >gi|326797637|ref|YP_004315456.1| multi-sensor hybrid histidine kinase [Sphingobacterium sp. 21] gi|326548401|gb|ADZ76786.1| multi-sensor hybrid histidine kinase [Sphingobacterium sp. 21] Length = 1203 Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 124/401 (30%), Positives = 210/401 (52%), Gaps = 29/401 (7%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILR 494 +D I +R++ + SI++ + GIA++ + GI N A+ GY +++LR Sbjct: 559 DDTVNFIAERELRALNAKFKSIVDNSPIGIALVEYQTGIFQEVNPAIPMFTGYTRDELLR 618 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS----LRIIIKKLPF 550 F+ TP + E L L+Q + + ++E L + + + + F Sbjct: 619 LSFS----DITPRAYH----EADKLQLKQLHKNGRFDNYEKEYLRKDGKRVWVSVTGVAF 670 Query: 551 SSCYS----LTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + LT+ DIS+ K+++ L AK+ AE ++ KS+FLA +SHE+RTPL AIIG Sbjct: 671 TDVSGEKKILTIVQDISQQKEQQRALKAAKEQAEIANNAKSEFLANMSHEMRTPLNAIIG 730 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 F++++ PL + EY + +SG +LD++NDLLD+SKIESGK++L FE V L Sbjct: 731 FTDLLLK---SPLSEAQK-EYMRAVFQSGQSLLDLINDLLDLSKIESGKLDLVFESVDLI 786 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG- 723 + + + +++ AN+K + + + P +L+D + ++Q+ N+LSNA+ FT G Sbjct: 787 KLAKQVVEILKYQANKKGLDFNLILSPELPPLVLSDGQRLRQVLFNLLSNALKFTERGSV 846 Query: 724 -QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 I H S +EVI+R V DTG+G+ EK + F Q +S R GTGLGL + Sbjct: 847 DLDIQVEQHLSAKEVIIRFSVTDTGIGIAEENREKIFEAFVQENSSIIKRFGGTGLGLTI 906 Query: 781 AKAMVDANMGKFYIFSTPAKGT--LIEIIFPLYDTSHPHDC 819 + ++ + + S G+ +++ L DT P + Sbjct: 907 SNRILSLMGSQLKLRSETGTGSTFYFDLLLTLVDTDQPSEA 947 >gi|126659478|ref|ZP_01730611.1| serine/threonine kinase with two-component sensor domain [Cyanothece sp. CCY0110] gi|126619212|gb|EAZ89948.1| serine/threonine kinase with two-component sensor domain [Cyanothece sp. CCY0110] Length = 2001 Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 81/250 (32%), Positives = 146/250 (58%), Gaps = 10/250 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L+ AK+ AE + KS+FL+ +SHE+RTPL I+G+++++K R L + + + Sbjct: 1534 ELAEAKQKAETANQAKSEFLSNMSHELRTPLNGILGYAQILK--RDSNLTSFQ-TQGLKI 1590 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG +L ++ND+LD+SKIE+ KM ++ + + + ++++ A +K IL ++ Sbjct: 1591 IHESGQHLLTLINDILDLSKIEARKMEIYPKGIHFPSFLDSVAGIIKMRAVDKNILFKSE 1650 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTG 745 F + +P I AD + ++Q+ LN+L NAI FT G ++ T + ++ + DTG Sbjct: 1651 FDSQLPLGIQADEKRLRQVLLNLLGNAIKFTDRGQVTFRVNAIQTEANQAQIRFEIVDTG 1710 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL-- 803 VG+T + K +PF QI + ++ R EGTGLGL + + +V+ + + ST +G+ Sbjct: 1711 VGITPEQATKIFQPFEQIGDIER-RAEGTGLGLAITQQLVELMGSELKVSSTVGEGSTFS 1769 Query: 804 IEIIFPLYDT 813 E +F + +T Sbjct: 1770 FETVFLVEET 1779 >gi|81300625|ref|YP_400833.1| periplasmic sensor hybrid histidine kinase [Synechococcus elongatus PCC 7942] gi|81169506|gb|ABB57846.1| periplasmic sensor hybrid histidine kinase [Synechococcus elongatus PCC 7942] Length = 977 Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 141/247 (57%), Gaps = 6/247 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ ++L A++ AE + KS FLA +SHE+RTPL AIIG+SE++ + + + Sbjct: 458 RETNDRLEQAREQAEAANQAKSAFLANMSHELRTPLNAIIGYSEMMMEEAEDGIEVEELL 517 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ--LYANEK 682 I+ +G +L+++N +LD+SKIE+G+M L+ E SL E ++ S+++ + N+ Sbjct: 518 PDFRKINNAGKHLLELINSILDLSKIEAGRMELYLESFSLPELINGVKSIIKPLIEKNQN 577 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 ++L+ +I + AD+ ++Q LN+LSNA FT G I ++V+ +V Sbjct: 578 QLLV--DCPADIGLMTADVTKLRQTLLNLLSNASKFTHQG--TIQLQVAAQGDQVVFKVV 633 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D+G+GM+ ++++ + F Q +S + GTGLGL +++ ++ GK + S +G+ Sbjct: 634 DSGIGMSPEQIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGKITVESVLGEGS 693 Query: 803 LIEIIFP 809 I P Sbjct: 694 TFTITLP 700 >gi|327539948|gb|EGF26547.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47] Length = 856 Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 99/390 (25%), Positives = 189/390 (48%), Gaps = 47/390 (12%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF--- 497 R++K+++E +L +++ + + I++ +G++ N+ ED++ +PF Sbjct: 307 RLHKQELEEREKRLHRVIDNMNSFVGIVDLDGVLQEINQTAINAASVAREDVIGRPFWEA 366 Query: 498 ------TVFLEQNTPSVMNHYLTEILSLDLRQTLEK------------ITLGSTKEEKLL 539 EQ SV E D+ + + S ++E Sbjct: 367 FWWSHDDQVAEQVKSSVQAAIRGETSRFDIAYRIAGDSSRMVDVSFVPVRDESGRDESGP 426 Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 L ++ D+++ + + L A A++ + KS FLA +SHEIRTP Sbjct: 427 PLYVVASGF-----------DVTDRYEFERSLKDATDAADQANRAKSQFLANMSHEIRTP 475 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 +T+I+G++++I ++ + + I R+G +L ++ND+LD+SKIE+ +M + Sbjct: 476 MTSILGYADLISQKQI----DEDTRSHVATIRRNGAFLLGLINDILDLSKIEADRMEVFD 531 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718 E V+L + + + ++Q+ A EK + IR + IPR I AD + ++QI +N++ NA+ F Sbjct: 532 ESVNLIHLIEDVLRIMQVRAAEKDLEIRVDYCGKIPREIQADSKRLRQILVNLVGNAVKF 591 Query: 719 TPSGGQIIISTTHTSNEEVILRVR------DTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 T +G + E++ LR R DTG+G+++ ++K +PF Q S Sbjct: 592 TEAGHVRVA----VRAEQIDLRTRVHFDVVDTGIGISDERMKKLFQPFSQGDPSIMRTYG 647 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GTGLGL +++ +V G+ S +G+ Sbjct: 648 GTGLGLVISQRLVAMLGGEITARSRVNEGS 677 >gi|153871221|ref|ZP_02000448.1| Signal transduction histidine kinase [Beggiatoa sp. PS] gi|152072313|gb|EDN69552.1| Signal transduction histidine kinase [Beggiatoa sp. PS] Length = 711 Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 90/274 (32%), Positives = 144/274 (52%), Gaps = 8/274 (2%) Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 LS RII ++ + + + +IS K +L AKK AE+ + KS FLA +SHE+RT Sbjct: 161 LSARIIEREGEYYAWSHV--ENISGQKWMIMELKQAKKKAEEANISKSLFLANMSHELRT 218 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 P+ I+G++E+++ + NP ++ I + +L +V+ +LDISKIE+GK++L+ Sbjct: 219 PMNTIVGYTEMLE-EEIKECPNPNLLQDIKSIHAAAKHLLGLVDGILDISKIEAGKIHLY 277 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 E L + I+ +Q +K ++ SF ++ DL V+QI +N+LSNA F Sbjct: 278 SERFDLKTMIQNTITTIQPIIEKKANALQISFDEDLGEAYTDLTKVRQILINLLSNASKF 337 Query: 719 TPSGGQII---ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 T G II + T + + +RV D G+GMTN + + F Q S + GTG Sbjct: 338 TDQG--IITLEVRRQRTQGDWITIRVSDEGIGMTNEQQANLFQVFTQADASISRKYGGTG 395 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 LGL + K G +I S KG+ ++ P Sbjct: 396 LGLAITKHFTQMLGGTIHIESEFGKGSHFKVRLP 429 >gi|288942028|ref|YP_003444268.1| multi-sensor signal transduction histidine kinase [Allochromatium vinosum DSM 180] gi|288897400|gb|ADC63236.1| multi-sensor signal transduction histidine kinase [Allochromatium vinosum DSM 180] Length = 867 Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/258 (32%), Positives = 137/258 (53%), Gaps = 8/258 (3%) Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 P L D++E K+ +++L A+ AE + K +FLA +SHEIRTP+ A+IG S Sbjct: 465 PAVGGLVLNGRDVTERKRHQHELEQARAAAESANRAKGEFLANMSHEIRTPMHAVIGLSS 524 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++ + P+ +Y I +G +L ++ND+LD SKIE+G+M L P+ L E + Sbjct: 525 LLLDSTL----LPQQRDYLERIHLAGTALLGVLNDILDYSKIEAGRMRLESIPLRLQEVL 580 Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727 +L ++ A +K + + A +P R+ D + Q+ N++ NA+ FT +GG + Sbjct: 581 DTTHALFEIQAEKKPLSLEFELAPEVPERLQGDPLRLLQVLNNLVGNALKFTHTGGVWVG 640 Query: 728 STTHTSNEEVIL---RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 T E +L VRDTG+G+T +LE+ F Q S + GTGLGL + K + Sbjct: 641 VTCQEQTETSVLIKISVRDTGIGLTPAQLERLFGVFHQADASTTRQYGGTGLGLSICKRL 700 Query: 785 VDANMGKFYIFSTPAKGT 802 + G+ + S +G+ Sbjct: 701 TELMGGEIGVESVAGQGS 718 >gi|253701838|ref|YP_003023027.1| PAS sensor protein [Geobacter sp. M21] gi|251776688|gb|ACT19269.1| PAS sensor protein [Geobacter sp. M21] Length = 1323 Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 117/429 (27%), Positives = 204/429 (47%), Gaps = 57/429 (13%) Query: 433 IEPEDVDTRINKRKMEIEVMQ--------------LCSILEATSDGIAIINREGIILSTN 478 ++ ++++ ++N+R EI MQ L I++ D ++N +G +L N Sbjct: 665 LQAQELEEKVNERDQEI--MQRRIAEQALRDSERRLADIIDFLPDPTFVVNAQGAVLIWN 722 Query: 479 RAVSKLFGYPVEDILRK----PFTVFLEQNTPSVMNHYLT-----EILSLDLRQTLE--K 527 RA + G ED+L K F P +++ LT +I L +R +E K Sbjct: 723 RAAEEFTGAKAEDMLGKDSDECGVPFYGMRRPLLLHMVLTPWRAEQIKPLYVRVVVEGDK 782 Query: 528 I---------------TLGSTK-----EEKLL----SLRIIIKKLPFSSCYSLTMHDISE 563 I T+G E K++ S+R I + + E Sbjct: 783 IIGESPVRSVSRPHAYTMGMAAPLYDSEGKVIAVIESVRDITELKEGEEELKRHRDHLEE 842 Query: 564 WKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 +E+ +L AK+ AE + KS FL+ +SHE+RTPL AI+G+++++K Q + Sbjct: 843 LVRERTMELLVAKERAEVANQAKSAFLSSMSHELRTPLNAILGYAQILKRQDNLTDTQRQ 902 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +E + G +L ++ND+LD+ KIE+ KM + L + + S+ ++ A+EK Sbjct: 903 QLEI---VRGCGEHLLSLINDVLDMGKIEAQKMEIEALSFDLSALLGQVFSIAKVKADEK 959 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + R ++PR + D R +KQ+ LN+LSNA+ +T G + S+ + + Sbjct: 960 DLGFRYEELTSLPRAVRGDQRKLKQVLLNLLSNAVKYTRRGRVTVRVDYELSSGTFVCEI 1019 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ +L +PF Q+ ++ Q+R EGTGLGL + + +V G+ + S P G Sbjct: 1020 TDTGIGIAPDKLNIIFEPFVQLADAGQVR-EGTGLGLSITRRLVTLMQGEVAVESEPGFG 1078 Query: 802 TLIEIIFPL 810 + + PL Sbjct: 1079 STFRVELPL 1087 >gi|17232819|ref|NP_489367.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] gi|17134466|dbj|BAB77026.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] Length = 559 Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 117/387 (30%), Positives = 184/387 (47%), Gaps = 55/387 (14%) Query: 478 NRAVSKLFGYPVEDILRKPFTVF-----LEQNTPS-VMNHYLTEILSLDLRQTLEKITLG 531 N ++ GY +I+ +PF + +E+ P V+ LTE S + R + K Sbjct: 183 NIGAERILGYQEAEIIGQPFELIFAPEAIERGQPQQVLKQALTEGFSRENRWHIRKDGTF 242 Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ---EKNKL----SHAKKIAEKESSH 584 + LR L +S M DI+E KQ EK +L A+ AE + Sbjct: 243 FWAHCLITPLRDENGNL---RGFSKIMQDITERKQAEEEKEQLLLREQAARAEAEAANRS 299 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K DFLA VSHE+RTP+TAIIG++ +++ G L R I+R+ NL + ++ DL Sbjct: 300 KDDFLAIVSHELRTPMTAIIGWAGMLQT---GALDEARASLALETIERNANLQMQLIEDL 356 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LDIS+I G+++L + V L E +++AI +VQ A+ K I I++ +I +I D + Sbjct: 357 LDISRIVRGELSLSIDLVDLVEVITDAIEVVQSLADNKGIQIKSRPDTSIDKIWGDSDRL 416 Query: 705 KQIALNILSNAIHFTPSGGQIIISTT------------------------HTSNEEVILR 740 Q+ LN+L+NAI FTP+GG+I + + H + +VI Sbjct: 417 LQVVLNLLTNAIKFTPNGGRIEVCLSKELGTGDWGLGNRGDETNVSCPIPHYAQIQVI-- 474 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-A 799 DTG G++ L + F Q +S +G GLGL +A+ +V+ + G S Sbjct: 475 --DTGQGISADFLPHIFERFRQADSSHTRSNKGLGLGLAIARHLVELHGGTIQAQSQGIG 532 Query: 800 KGTLIEIIFPLYDTS-------HPHDC 819 +G + P+ + S H H C Sbjct: 533 QGATFTVKLPITEESRGVNTIQHNHHC 559 >gi|118590595|ref|ZP_01547997.1| ATP-binding region, ATPase-like protein [Stappia aggregata IAM 12614] gi|118437058|gb|EAV43697.1| ATP-binding region, ATPase-like protein [Stappia aggregata IAM 12614] Length = 814 Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 93/354 (26%), Positives = 180/354 (50%), Gaps = 6/354 (1%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV-FLEQNTPSVMNHYLTEI 516 L+ S+ +A+ +G + N A +++G + + P + T S E Sbjct: 453 LDNLSEAVAVFGSDGRLRLWNPAFGRIWGLEEDQLTELPHVKEVVSACTLSETERDAWEQ 512 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL-TMHDISEWKQEKNKLSHAK 575 L+ ++ L+ T ++ E+ + +P +L T D+++ + L Sbjct: 513 LAGNVTGLLDNRTQKVSRLERHNGDVVDYATVPLPDGGTLVTFVDVTDSVNVERALLEKN 572 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 + E+ K+ F+ VS+E+R+PLT IIGF++++ + +FG L + + EYA+YI S + Sbjct: 573 EALEQADQIKNAFIQHVSYELRSPLTNIIGFAQLLADPKFGELSDKQS-EYADYIQSSSS 631 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L I+ND+LD++ +++G M L V + V+ A+ ++ E RI +RT +I Sbjct: 632 ALLAIINDILDLATLDAGIMELDLGEVDVAPTVAAAVEGLKDRIAEARINLRTHVPGDIG 691 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 ++AD + ++Q+ N++SNA+ ++ G + +S + +++V V+D G G+ L + Sbjct: 692 MMVADEKRLRQVLFNLISNAVRYSEPDGVVDVSCSR-EDDKVTFVVQDHGYGIPAEILTQ 750 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F + + R +G GLGL + K+ V+ + G I S KGT + +FP Sbjct: 751 VFNRF--VGHDTGSRRQGAGLGLAIVKSFVELHGGTVDIQSAEGKGTTVTCVFP 802 >gi|83415010|dbj|BAD80468.2| two-component system sensory histidine kinase [Synechococcus elongatus PCC 6301] Length = 977 Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 141/247 (57%), Gaps = 6/247 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ ++L A++ AE + KS FLA +SHE+RTPL AIIG+SE++ + + + Sbjct: 458 RETNDRLEQAREQAEAANQAKSAFLANMSHELRTPLNAIIGYSEMMMEEAEDGIEVEELL 517 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ--LYANEK 682 I+ +G +L+++N +LD+SKIE+G+M L+ E SL E ++ S+++ + N+ Sbjct: 518 PDFRKINNAGKHLLELINSILDLSKIEAGRMELYLESFSLPELINGVKSIIKPLIEKNQN 577 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 ++L+ +I + AD+ ++Q LN+LSNA FT G I ++V+ +V Sbjct: 578 QLLV--DCPADIGLMTADVTKLRQTLLNLLSNASKFTHQG--TIQLQVAAQGDQVVFKVV 633 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D+G+GM+ ++++ + F Q +S + GTGLGL +++ ++ GK + S +G+ Sbjct: 634 DSGIGMSPEQIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGKITVESVLGEGS 693 Query: 803 LIEIIFP 809 I P Sbjct: 694 TFTITLP 700 >gi|312880886|ref|ZP_07740686.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] gi|310784177|gb|EFQ24575.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] Length = 868 Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/257 (31%), Positives = 131/257 (50%), Gaps = 7/257 (2%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D++E + + L A+K AE+ KS FLA+VSHEIR PL+ ++G SE+ P Sbjct: 339 LFDVTERARGEAILREARKAAEEADQAKSAFLAQVSHEIRNPLSTLLGLSELCLGT---P 395 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 L PR + I ++ +L I ND+LD+S++E+GK+ L P SL + + +A+ V Sbjct: 396 L-QPRQRHWIQSIHQASTHMLRIANDVLDLSRVEAGKLELQQVPYSLPQLLRDALKAVLP 454 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 K + + +P R+L D ++QI +N+L+NA+ F G + + Sbjct: 455 QGEAKGLALALREEPGLPERLLGDPGRIQQILVNLLTNAVKFCDRGRVELRARKDPQGPW 514 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + L V DTG G+ +L + +PF Q S +G GLGLP+A + + G S Sbjct: 515 LELAVEDTGQGIEPEDLRRVFQPFWQ--ASPSTSAQGMGLGLPIALQLTRSMGGNIEASS 572 Query: 797 TPAKGTLIEIIFPLYDT 813 P GT + PL + Sbjct: 573 LPGSGTTFLVRLPLEEA 589 >gi|283851563|ref|ZP_06368843.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573097|gb|EFC21077.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 535 Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 112/364 (30%), Positives = 185/364 (50%), Gaps = 43/364 (11%) Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 GI ++ EG +++ N + GY +E+I ++ F F PS MN + + Q Sbjct: 18 GIVQVDLEGSVIAANWKYCSITGYSIEEIEQQQFLNF---THPSYMN--------IQIEQ 66 Query: 524 TLEKITLGST-----------KEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEK 568 T EK+ GST K+ + +R+ + T+ DI++ + + Sbjct: 67 T-EKLIDGSTRTFDSEQQYCRKDGTEIWVRLTVCPARDEGGRPKTLIAFVEDITDRIESE 125 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L AK+ AE+ + KS+FLA +SHEIRTP+ ++G ++++ G G R EY Sbjct: 126 KRLRQAKEEAEQANRAKSEFLANMSHEIRTPMNGVMGMTDLLLMS--GLSGPAR--EYLQ 181 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +SG +L I+ND+LD+SKIESGK L + SL +++ + ++L A +K + R Sbjct: 182 LIKQSGTSLLQIINDILDLSKIESGKFVLDCQAFSLRDSLETILHPLRLGARDKGLDFRH 241 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL-------- 739 A + P R+L D + Q+ N++ NAI FT G ++ + + E L Sbjct: 242 VIAADAPDRLLGDKGRLGQVLTNLVGNAIKFTEKG---MVRLSVEPDPEAALPQTVRFLF 298 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 RV+D G+G+ L +PF Q+ S G GTGLGL ++K +V G+ ++ ST Sbjct: 299 RVQDDGIGIPAERLTDIFEPFSQVIKSGPAAGGGTGLGLSISKCLVGMMAGRIWVESTVG 358 Query: 800 KGTL 803 KG++ Sbjct: 359 KGSI 362 >gi|254419545|ref|ZP_05033269.1| PAS fold family [Brevundimonas sp. BAL3] gi|196185722|gb|EDX80698.1| PAS fold family [Brevundimonas sp. BAL3] Length = 523 Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 80/240 (33%), Positives = 128/240 (53%), Gaps = 12/240 (5%) Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 DFLA +SHE+RTPL +IG + + +P E N I SG + +V+D+LD Sbjct: 150 DFLANMSHEVRTPLNGVIGIVDALSRTAL----DPAQTEMVNLIRASGVTLERLVSDILD 205 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI---LIRTSFANNIPRILADLRS 703 +SKIE+G++ L P LDEA+ + ++++ A+EK + +IR A + + D Sbjct: 206 VSKIEAGELTLETRPFDLDEALDAPLDVMRVRADEKGLRFDVIRDDEARGV--FVGDSTR 263 Query: 704 VKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 ++Q+ N+LSNA+ FT GG +I + H S +I+ ++DTGVG + F Sbjct: 264 IRQVIGNLLSNAVKFTHQGGVSVRIALDEDHDSLTHLIVDIQDTGVGFNAEHAPRLFDRF 323 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 Q + R GTGLGL + +A+V+ G+ STP +G+ I PL ++ D + Sbjct: 324 SQADATITRRFGGTGLGLSICRALVEMMGGRITAESTPGQGSRFRIEIPLARSTSLSDYV 383 >gi|85714154|ref|ZP_01045143.1| Histidine kinase [Nitrobacter sp. Nb-311A] gi|85699280|gb|EAQ37148.1| Histidine kinase [Nitrobacter sp. Nb-311A] Length = 831 Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/260 (31%), Positives = 132/260 (50%), Gaps = 4/260 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT HDI++ + + L E K DF+ VS+E+R+PLT IIGF+ ++ + Sbjct: 571 LTFHDITDSENVERALRERNDALETADQMKVDFVHHVSYELRSPLTTIIGFAHLMNDPGT 630 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GPL + EY NYI S + +L + N++LD++ I++G M L PV + + ++ A + Sbjct: 631 GPL-TEKQAEYVNYITSSTDALLALTNNILDLATIDAGAMTLELGPVDVRKTIAAAAEGI 689 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 Q I++ +I + D R + Q+ N+L+NA +F+P I +S T + Sbjct: 690 QDRLARDHIVLNVDVDPDIGNFIGDERRIVQVLYNLLANAANFSPPNAVITVSARRTEH- 748 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V V D G G+ +K F N + R G GLGL L ++ V+ + G+ + Sbjct: 749 SVRFAVMDEGPGIPPDVKDKVFDWFESHANGSRHR--GAGLGLSLVRSFVELHGGRVHFD 806 Query: 796 STPAKGTLIEIIFPLYDTSH 815 ST GT + FPL T+H Sbjct: 807 STITSGTRVVCDFPLDQTAH 826 >gi|291485343|dbj|BAI86418.1| two-component sensor histidine kinase [Bacillus subtilis subsp. natto BEST195] Length = 579 Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 99/366 (27%), Positives = 184/366 (50%), Gaps = 27/366 (7%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 R E++ +L +++E G+ +I+ G I NR+ +K F +LR+ + E Sbjct: 227 RTQEMQRDRLLTVIENIGSGLIMIDGRGFINLVNRSYAKQFHINPNHMLRRLYHDAFEHE 286 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 ++ Q +E I + TK+ KLL L I I++ F M EW Sbjct: 287 ---------------EVIQLVEDIFMTETKKCKLLRLPIKIERRYFEVDGVPIMGPDDEW 331 Query: 565 KQEK---NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 K + ++ KK+ + + DF+A VSHE++TP+T+I GF+E + + G + + Sbjct: 332 KGIVLVFHDMTETKKLEQ----MRKDFVANVSHELKTPITSIKGFTETLLD---GAMEDK 384 Query: 622 RYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + E+ + I + + +V DLLD+SKIE L E + + E +L++ A+ Sbjct: 385 EALSEFLSIILKESERLQSLVQDLLDLSKIEQQNFTLSIETFEPAKMLVEIETLLKHKAD 444 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 EK I + + + + D +KQ+ LN+++NA+ +TP GG + I+ +++ + Sbjct: 445 EKGISLHLNVPKDPQYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAIN-VKPREKDIQIE 503 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D+G+G+ E+ + + F ++ + GTGLGL + K +++A+ GK + S P + Sbjct: 504 VADSGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTSEPGR 563 Query: 801 GTLIEI 806 GT+ + Sbjct: 564 GTVFTV 569 >gi|256423016|ref|YP_003123669.1| histidine kinase [Chitinophaga pinensis DSM 2588] gi|256037924|gb|ACU61468.1| histidine kinase [Chitinophaga pinensis DSM 2588] Length = 736 Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 88/255 (34%), Positives = 139/255 (54%), Gaps = 16/255 (6%) Query: 564 WKQEK--NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +KQE+ L H+++ +K + K FLA +SHEIRTP+ A++GF+ +++ Q PL N Sbjct: 209 YKQEQLIEALDHSRQQEKKLTVVKDQFLANMSHEIRTPMNAVLGFTHLLQQQ---PL-NE 264 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD-EAVSEAISLV-QLYA 679 + EY I +G +LDI+ND+LDISKIESG M L EPVS + ++ L+ Q A Sbjct: 265 KSREYVASIQHAGENLLDIINDILDISKIESGMMRL--EPVSFSLRGMMHSLQLMFQPKA 322 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 EK + + +P IL D+ + Q+ +N+++NAI FTP GQ+ + + E Sbjct: 323 QEKLLDLSVHIDAGVPDILYGDVMRLTQVLVNLVNNAIKFTPQ-GQVTVRVSPVGGNESG 381 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 ++ + DTG+G++ +L F Q + GTGLGL + K +V+ G + Sbjct: 382 IRLLFTIADTGIGISPNKLSTIFDRFNQAEADITRKYGGTGLGLTIVKQLVELQHGTISV 441 Query: 795 FSTPAKGTLIEIIFP 809 S KG+ + P Sbjct: 442 ESELGKGSTFLVQLP 456 >gi|34497036|ref|NP_901251.1| sensor/response hybrid [Chromobacterium violaceum ATCC 12472] gi|34330322|gb|AAQ59257.2| probable sensor/response hybrid [Chromobacterium violaceum ATCC 12472] Length = 664 Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/266 (31%), Positives = 138/266 (51%), Gaps = 8/266 (3%) Query: 558 MHDISEWKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M S+ Q+ N +L+ A+ AE + KS+FLA +SHEIRTPL +IG +++++ R Sbjct: 1 MEARSQALQQANVQLTEARDAAEAANRAKSEFLAVMSHEIRTPLNGVIGMTDLLQRTRL- 59 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + R Y + + RSG +L I++D+LD SKIE+GK L +P L+ V E + + Sbjct: 60 ---DDRQRHYVSVVHRSGEDLLAIISDILDFSKIEAGKFELDRQPFCLNLLVEEIVERLA 116 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNE 735 A K + + + ++ D + + Q+ N++ NAI FT SG + + S+ Sbjct: 117 PVAYGKGLELMCALPLMPVEVVGDGKRLGQVLTNLVGNAIKFTESGHVLAKVDRAGESDA 176 Query: 736 EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 V R V+DTG+G+ + ++ KPF Q +S R GTGLGL +++ +V G+ Sbjct: 177 GVTCRISVKDTGIGIAPDQQKRLFKPFSQADSSTTRRFGGTGLGLVISQRLVGMMGGRIE 236 Query: 794 IFSTPAKGTLIEIIFPLYDTSHPHDC 819 + S P G+ L S C Sbjct: 237 LESEPGSGSEFHFTLTLPRASDSQLC 262 >gi|294496045|ref|YP_003542538.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292667044|gb|ADE36893.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 729 Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 99/388 (25%), Positives = 202/388 (52%), Gaps = 25/388 (6%) Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 V R ++++E + +I +T+D I + + +G I+ N+A + GY +++LR Sbjct: 349 VQRRKTEKELEKSEDKFRTIFASTNDAIFVHDLKGNIMEVNKAACETTGYSRDELLR--- 405 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEK--ITLGST---KEEKLLSLRIIIKKLPFSS 552 T + E + +++ EK +T +++ + + I + + ++ Sbjct: 406 -----MKTKDINTGLSMEEIPQRIKEVKEKGHAIFEATFRREDDTTIPVEISARMIEYND 460 Query: 553 CYSLTM--HDISEWKQEKNKL-SHAKKIAEKESSHKS------DFLARVSHEIRTPLTAI 603 ++ + DI+E K+ + +L +A+ +++ KS +FL+ VSHE++TPLT+I Sbjct: 461 KPTILVVARDITERKRAEEELRKYAQDLSKANEELKSLDKMKDEFLSNVSHELKTPLTSI 520 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 IG++E++ + G LG + + R+ + +V+ LL +S+ ++G + FE ++ Sbjct: 521 IGYTELLNDGSLGELGEEQK-HAEETVMRNTKRLQRLVDSLLYLSRTQAGTVQYDFETLN 579 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 + E + I +Q+ EK + + ++P+I D + + NI+ N+I FTP GG Sbjct: 580 ISELTDQIIEDLQIQTEEKNLEMIKKIEPDLPQIKGDRDKLTDMFTNIIDNSIKFTPKGG 639 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 I I + +E + + ++DTG+G+ ++ + F QI +SQ+ + GTGLGL + K Sbjct: 640 SITI-FANKEDEYIHINIKDTGIGIPKDMIDNLFQRFYQIDSSQKRKYGGTGLGLYITKT 698 Query: 784 MVDANMGKFYIFST-PAKGTLIEIIFPL 810 +V+A+ G+ ++ S KGT + I P+ Sbjct: 699 IVEAHEGEIWVESEGKGKGTEVHIKLPV 726 >gi|224538905|ref|ZP_03679444.1| hypothetical protein BACCELL_03801 [Bacteroides cellulosilyticus DSM 14838] gi|224519483|gb|EEF88588.1| hypothetical protein BACCELL_03801 [Bacteroides cellulosilyticus DSM 14838] Length = 652 Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 89/258 (34%), Positives = 131/258 (50%), Gaps = 23/258 (8%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 +HDI + Q N+L AK+ AE+ KS FLA +SHEIRTPL AI+GFSE+I Sbjct: 271 IHDIGDRVQRSNELIEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFSEIIALTE--- 327 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 EY N I ++ NL+L ++ND+LD+S+IESGK ++F+ V E L+ Sbjct: 328 -DEVEKAEYLNIIQKNSNLLLQLINDILDLSRIESGKSEMNFQLV-------EMTGLIDE 379 Query: 678 YANEKRILIRTSFANNIPR------ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 R+ ++T N+ R I+ D + Q+ N LSNAI T G I Sbjct: 380 VEKVHRLKMKTGIRLNVMRPDEEIWIMVDRNRITQVLFNFLSNAIKNTHEGA--ITLGLE 437 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 E + + V DTG G+ +L F ++ + Q GTGLGLP+ +++V+ GK Sbjct: 438 VCGEWLKVYVTDTGCGIAKEKLPLIFNRFEKLNDFVQ----GTGLGLPICQSIVERLGGK 493 Query: 792 FYIFSTPAKGTLIEIIFP 809 + S G+ + P Sbjct: 494 ISVESEVGVGSTFVMTLP 511 >gi|327394559|dbj|BAK11981.1| sensor kinase protein RcsC [Pantoea ananatis AJ13355] Length = 880 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/258 (32%), Positives = 136/258 (52%), Gaps = 7/258 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ ++ P G Sbjct: 376 DVSARVRMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTRQL-PSG 434 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + N S +L+L I++D+LD SKIES ++ + P S E ++ + Sbjct: 435 IDSLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPRPFSPREVITHIVGNYLSLV 491 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +KR+ + +++P+ L D ++Q+ N+L+NAI FT +G II + + + Sbjct: 492 VKKRLTLYCYIEHDVPQALDGDPLRLQQVISNLLNNAIKFTHTG--CIILHAYVTQGYLA 549 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 R RDTGVG+ EL + PF Q+ N Q +GTGLGL + + +++ G + S P Sbjct: 550 FRTRDTGVGIPAKELTRLFDPFFQVGNGVQRNFQGTGLGLAICEKLINMMDGDIEVESEP 609 Query: 799 AKGTLIEIIFPLYDTSHP 816 G+ + P+Y+ P Sbjct: 610 GMGSQFIVRIPIYNGKQP 627 >gi|291326604|ref|ZP_06125114.2| sensor histidine kinase/response regulator [Providencia rettgeri DSM 1131] gi|291313686|gb|EFE54139.1| sensor histidine kinase/response regulator [Providencia rettgeri DSM 1131] Length = 1032 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 87/263 (33%), Positives = 140/263 (53%), Gaps = 14/263 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ + + +L AK++AE+ + KS FLA +SHEIRTPL +IG E++ N Sbjct: 439 DITIQAETEKQLDDAKRLAEEANRAKSTFLATMSHEIRTPLYGLIGTLELLANTSLSS-- 496 Query: 620 NPRYIEYANYIDR---SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + A++IDR + L++ ++ D+LDISKIE+ ++ +H +P L E V + + L Q Sbjct: 497 -----QQAHFIDRISTTSQLLMQLIGDILDISKIEANQIQIHNQPFDLLELVQQTVQLYQ 551 Query: 677 LYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A +K +L+ N+ + D ++QI N+LSNAI FT G + I ++ Sbjct: 552 GIAQQKGLLLFAIIDPNVQANRIGDSARLQQILGNLLSNAIKFTHR-GTVTIELKRSNKN 610 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++LRV DTGVG++ + K +PF Q + G GTGLGL + ++ G+ + Sbjct: 611 NILLRVSDTGVGISPEQQIKLFEPFYQAHSEIHAYG-GTGLGLFICSKLIKLMDGQISLQ 669 Query: 796 STPAKGTLIEIIFPL-YDTSHPH 817 S G+ + PL D H Sbjct: 670 SETGVGSSFLVTLPLALDIQQTH 692 >gi|296121601|ref|YP_003629379.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] gi|296013941|gb|ADG67180.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] Length = 803 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 87/264 (32%), Positives = 144/264 (54%), Gaps = 18/264 (6%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK AE + KS+FLA +SHEIRTP+TAI+G++E++ Q P P + Sbjct: 370 ELGKAKTQAEDAARTKSEFLANMSHEIRTPMTAILGYTELLLEQ---PDIAPHAADSLQT 426 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I R+ + +L+I+ND+LD+SKIE+ K+ + S ++A +L+++ A +K + + Sbjct: 427 IRRNADFLLEIINDILDLSKIEADKLTIESVRCSPILIANDACALMRIRARDKGLKLVVQ 486 Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIII-----STTHTSNEEVILRVR 742 A+N+P + D ++QI LN+L NA+ FT G Q+ + T T N + + +R Sbjct: 487 TASNVPEFVETDPTRLRQILLNLLGNAVKFTHVGNVQLRVEYVNPQGTQTGNPDALGGLR 546 Query: 743 ----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 DTG+GMT ++ + +PF Q S + GTGLGL +++ + G + S Sbjct: 547 FSVCDTGIGMTKEQIGRLFQPFTQADTSTTRKYGGTGLGLTISRRLARMMHGDIEVTSQV 606 Query: 799 AKGTL----IEIIFPLYDTSHPHD 818 G++ I+ I P + T HD Sbjct: 607 GVGSVFSLHIDAIKPQFSTPQFHD 630 >gi|153812069|ref|ZP_01964737.1| hypothetical protein RUMOBE_02465 [Ruminococcus obeum ATCC 29174] gi|149831724|gb|EDM86810.1| hypothetical protein RUMOBE_02465 [Ruminococcus obeum ATCC 29174] Length = 986 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 91/269 (33%), Positives = 146/269 (54%), Gaps = 21/269 (7%) Query: 554 YSLTMHD-ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV--- 609 Y L M D S+WK + LS A + AE + KS FL+ +SH+IRTP+ AIIGF+ + Sbjct: 443 YILVMSDRTSDWKMNQ-ALSEAVRAAETANKAKSTFLSNMSHDIRTPMNAIIGFTTLAVS 501 Query: 610 -IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 I +++ R +Y I S N +L ++ND+LD+S+IESGK++L VSL E + Sbjct: 502 NIDDKK-------RVQDYLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSEVL 554 Query: 669 SEAISLV--QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 + +++ Q++A + + + N + D + Q+ LN+LSNA+ FTP+GG + Sbjct: 555 HDLKTIISGQIHAKQLELYMDVMDVTN-EDVYCDKTRLNQVLLNLLSNAVKFTPAGGTVS 613 Query: 727 IST-----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 + T +E +RV+D G+GM+ ++K PF + S R +GTGLG+ + Sbjct: 614 VRIRQCHGTQKGSELYEIRVKDNGIGMSQEFVQKIFSPFERERTSTVSRTQGTGLGMAIT 673 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 K +VD G + + KGT + P Sbjct: 674 KNIVDMMGGTIEVQTEQDKGTEFIVRLPF 702 >gi|302662555|ref|XP_003022930.1| hypothetical protein TRV_02917 [Trichophyton verrucosum HKI 0517] gi|291186903|gb|EFE42312.1| hypothetical protein TRV_02917 [Trichophyton verrucosum HKI 0517] Length = 2406 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 134/249 (53%), Gaps = 21/249 (8%) Query: 573 HAKKIAEKESSH-----------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 H KIAE E++H KS FLA +SH++RTP+T +IG SE++K + +P Sbjct: 1863 HKAKIAEVEANHNVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKL----DP 1918 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + Y I + +L ++ND+LD SK+E+GKM + P++L + ++E + ++ E Sbjct: 1919 KQDVYVESIRVCADTLLTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHRE 1978 Query: 682 KRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 K + + P +L D + QI +N+LSN+ FTP+G + + E Sbjct: 1979 KGLNTIEDLDSIDPDLLVMGDPVRLHQIFMNLLSNSYKFTPAGSVTVRAIVEEDTPEKIR 2038 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIF 795 V +V DTG+G++ +L + +PF Q +S G+GLGL + KA++ D G+ ++ Sbjct: 2039 VTCKVADTGIGISEEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQ 2098 Query: 796 STPAKGTLI 804 S +GT + Sbjct: 2099 SKEGEGTTV 2107 >gi|188576089|ref|YP_001913018.1| two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520541|gb|ACD58486.1| two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 1364 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 101/380 (26%), Positives = 180/380 (47%), Gaps = 29/380 (7%) Query: 464 GIAII--NREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLD 520 G AII + G + N A K+ GY +++ R+ + F+EQ+ L + Sbjct: 503 GYAIIATDSSGFVTLFNPAAEKMLGYNAAEVIGRRKASQFIEQDELQERARMLADQTGTP 562 Query: 521 LRQTLEKI----TLGSTKEEKLLSLRIIIKKLP----FSSC---------YSLTMHDISE 563 + TLE I +LG + + + ++LP S+ Y D+ E Sbjct: 563 VAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAVDLIE 622 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K ++ +L A A+ + KSDFLA +SHEIRTP+ AI+G +++ Sbjct: 623 QKLQEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQ--- 679 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + IDRS +L+I+ND+LD SKIE+G+++L P L++ L++ + K Sbjct: 680 -DMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLSAKP 738 Query: 684 I-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVI 738 + +I + +L D + Q+ +N++ NAI FT G ++ S + +++ Sbjct: 739 VEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKFKLL 798 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 VRDTG+G++ + PF Q S R G+GLGL +++ +++ G+ + S P Sbjct: 799 FSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEVESVP 858 Query: 799 AKGTLIEIIFPLYDTSHPHD 818 +G+ + L ++ P + Sbjct: 859 GRGSEFYFVITLEKSAPPQE 878 >gi|317486729|ref|ZP_07945546.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316922112|gb|EFV43381.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 887 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 86/248 (34%), Positives = 132/248 (53%), Gaps = 8/248 (3%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + LS A + A ++ KS+FL+ +SHEIRTP+ AIIG + VI R R + Sbjct: 351 RQALSDALENARNANTAKSNFLSHMSHEIRTPMNAIIGMT-VIALTRLDD--RSRMEDCL 407 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I S +L ++ND+LD+SKIE GK+ + EP + ++ I+L+Q A E+ + Sbjct: 408 TKIALSSRHLLGLINDVLDMSKIEGGKLTIAHEPFNFKISLQGVINLIQPQALERGLDFE 467 Query: 688 TSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST--THTSNEEVILR--VR 742 S + + +L D + QI +NILSNA+ FTP GG I + H N V R +R Sbjct: 468 VSLSGVDEEELLGDALRLNQILINILSNALKFTPVGGSIRLEVHQLHKKNNNVQFRFVIR 527 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+GM+ +++ PF Q +S + GTGLG+ + K +V G ++ S +GT Sbjct: 528 DTGIGMSQEFIKRLYTPFEQATSSTASKFGGTGLGMAITKNLVSLLGGTIFVKSEEGRGT 587 Query: 803 LIEIIFPL 810 + P Sbjct: 588 EFTVELPF 595 >gi|218517057|ref|ZP_03513897.1| probable two-component sensor histidine kinase protein [Rhizobium etli 8C-3] Length = 636 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 109/396 (27%), Positives = 192/396 (48%), Gaps = 27/396 (6%) Query: 430 QNGIEPEDVDTRINKR-KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 +N E D++TR N K++ E ++ S+G+A+ +G I +N A L+G Sbjct: 253 ENLTEQVDLETRYNTLVKVQGET------IDHLSEGVAVFGPDGRIRLSNPAFRALWG-- 304 Query: 489 VEDILRKPFT---VFLEQNTPSV-----MNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 + + KP T E PS + I S D + + TL E Sbjct: 305 ITEAEAKPGTHIRALGEACAPSYDRPDGWKTFAELITSFDDERRSGQGTL-----ELFSG 359 Query: 541 LRIIIKKLPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 L + +P + + LT ++++ + + L+ + K K+DF+ VS+E+R+P Sbjct: 360 LVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELKNDFVQHVSYELRSP 419 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 LT IIGF+++++ Q GPL N R EY ++I S +++L +VND+LD++ +++G M L++ Sbjct: 420 LTNIIGFTDLLRTQGVGPL-NERQAEYIDHISTSSSVLLTLVNDILDLATVDAGIMRLNY 478 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 + L++ + + + E +++ + + I+AD + +KQI L +LSNA +F+ Sbjct: 479 AEIDLNDLLDDVSMQIADRLQESGVVLEITAPAYLGSIVADPQRLKQILLKLLSNAANFS 538 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 P G I + + + VRD G G++ + F S + RG G GLGL Sbjct: 539 PEGSSISLECRREGT-DFVFSVRDRGPGISPDMIATVFDRFATGAKSGK-RG-GAGLGLS 595 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 + + V + G I S P KGT + P + H Sbjct: 596 IVDSFVSLHHGDVTIDSEPGKGTTVVCRIPSVNIPH 631 >gi|14133665|gb|AAK54095.1|AF362376_1 histidine kinase DhkK [Dictyostelium discoideum] Length = 1213 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 91/286 (31%), Positives = 146/286 (51%), Gaps = 16/286 (5%) Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEI 596 ++ + III L F+ CY + + + KN +L+ AK A + + +FLA +SHEI Sbjct: 768 IIDVTIIIMTLIFTLCYQYFIDEAHRETKLKNAQLTIAKDAAIEAYQARQEFLATMSHEI 827 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL +IG + ++++ P P A + G+++L +VND+LD+SK+E+ +M Sbjct: 828 RTPLNGLIGMATLLRDSHNLP---PEEKTMAKAVKSCGDILLRLVNDILDLSKLEANQMG 884 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNA 715 L P + E + ++ ANEK I + ++ IP I L D + QI +N+ NA Sbjct: 885 LEHIPFRMRELTQQICHVLSGQANEKNIHLSCEVSDKIPSILLGDSGRILQILMNLTGNA 944 Query: 716 IHFTPSG-GQIIISTTHTSNEEVIL---------RVRDTGVGMTNYELEKAMKPFGQIPN 765 + FT SG +III +E V L RV+DTG+G+ +K + F Q Sbjct: 945 LKFTQSGYVKIIIDLIEEESELVSLKKGEYNISFRVKDTGIGVPVESHQKIFEAFVQADP 1004 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-AKGTLIEIIFPL 810 S + G+GLGL L +V G+ +++ P G+ I PL Sbjct: 1005 SDSRKYGGSGLGLYLCAKLVRLMKGEIGVYNNPDCDGSTFWFILPL 1050 >gi|326478067|gb|EGE02077.1| serine/threonine protein kinase [Trichophyton equinum CBS 127.97] Length = 2408 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 134/249 (53%), Gaps = 21/249 (8%) Query: 573 HAKKIAEKESSH-----------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 H K+AE E++H KS FLA +SH++RTP+T +IG SE++K + +P Sbjct: 1863 HKAKVAEVEANHNVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKL----DP 1918 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + Y I + +L ++ND+LD SK+E+GKM + P++L + ++E + ++ E Sbjct: 1919 KQDVYVESIRVCADTLLTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHRE 1978 Query: 682 KRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 K + + P +L D + QI +N+LSN+ FTP+G + + E Sbjct: 1979 KGLETVEDLDSIDPDLLVMGDPVRLHQIFMNLLSNSYKFTPAGSVTVRAIVEEDTPEKIR 2038 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIF 795 V +V DTG+G++ +L + +PF Q +S G+GLGL + KA++ D G+ ++ Sbjct: 2039 VTCKVADTGIGISEEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQ 2098 Query: 796 STPAKGTLI 804 S +GT + Sbjct: 2099 SKEGEGTTV 2107 >gi|209966568|ref|YP_002299483.1| histidine protein kinase DivJ [Rhodospirillum centenum SW] gi|209960034|gb|ACJ00671.1| histidine protein kinase DivJ [Rhodospirillum centenum SW] Length = 478 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 90/239 (37%), Positives = 134/239 (56%), Gaps = 5/239 (2%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG--NPRYIEYANYI 630 H + A + S K++FLA VSHE RTPL AIIG SE+ + P G R EY + I Sbjct: 227 HQRLRALESSRSKTEFLAMVSHEFRTPLNAIIGLSEL--GRTLPPSGAEGGRTREYFSLI 284 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SGN +LD+VNDLL++SK+E K+++ E V L ++ A+ LV+ A+ + ++R Sbjct: 285 HESGNTLLDLVNDLLNLSKVEVAKLHVTPEEVDLGAVMAAALRLVRQRADARGQILRVDL 344 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 P AD R++ + +N+L+NA+ FTP GG + +S + V DTG G+ Sbjct: 345 PGPPPACRADARALHHMLVNLLTNALKFTPDGGSVTLSALAVPGGASV-TVADTGPGIPA 403 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L + ++PF ++ NS GEGTGLGL L A+ + G + S P +GT I P Sbjct: 404 DQLPRLLQPFERLDNSYARSGEGTGLGLALVDALARLHGGHLTLDSRPGQGTTATIFLP 462 >gi|165925853|ref|ZP_02221685.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Orientalis str. F1991016] gi|229896495|ref|ZP_04511663.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Yersinia pestis Pestoides A] gi|165922465|gb|EDR39642.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Orientalis str. F1991016] gi|229700569|gb|EEO88600.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Yersinia pestis Pestoides A] Length = 924 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/238 (35%), Positives = 130/238 (54%), Gaps = 8/238 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ S KS+FLA +SHE+RTPL +IGF+ Q P +Y Sbjct: 277 ELGLAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFTR----QTLKTSLTPTQTDYLQT 332 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RS N +L I+ND+LD SK+E+ K+ L P SL E + E I L+ A+EK + + Sbjct: 333 IQRSANNLLCIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLH 392 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVR--DTG 745 N++P ++L D ++QI N+L NAI FT G I++ ++++V L V DTG Sbjct: 393 INNDVPDQVLGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTG 452 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G++ + + + F Q S R GTGLGL + + +V G S + G++ Sbjct: 453 IGISESQQAQLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSI 510 >gi|326470773|gb|EGD94782.1| serine/threonine protein kinase [Trichophyton tonsurans CBS 112818] Length = 2374 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/255 (30%), Positives = 136/255 (53%), Gaps = 21/255 (8%) Query: 567 EKNKLSHAKKIAEKESSH-----------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + H K+AE E++H KS FLA +SH++RTP+T +IG SE++K + Sbjct: 1857 QAREAEHKAKVAEVEANHNVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKL 1916 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 +P+ Y I + +L ++ND+LD SK+E+GKM + P++L + ++E + + Sbjct: 1917 ----DPKQDVYVESIRVCADTLLTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRAL 1972 Query: 676 QLYANEKRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + EK + + P +L D + QI +N+LSN+ FTP+G + + Sbjct: 1973 RYTHREKGLETVEDLDSIDPDLLVMGDPVRLHQIFMNLLSNSYKFTPAGSVTVRAIVEED 2032 Query: 734 NEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANM 789 E V +V DTG+G++ +L + +PF Q +S G+GLGL + KA++ D Sbjct: 2033 TPEKIRVTCKVADTGIGISEEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLG 2092 Query: 790 GKFYIFSTPAKGTLI 804 G+ ++ S +GT + Sbjct: 2093 GRIWLQSKEGEGTTV 2107 >gi|127512132|ref|YP_001093329.1| hybrid sensory histidine kinase BarA [Shewanella loihica PV-4] gi|126637427|gb|ABO23070.1| Hpt sensor hybrid histidine kinase [Shewanella loihica PV-4] Length = 933 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 89/252 (35%), Positives = 137/252 (54%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A + S KS+FLA +SHE+RTPL +IGF+ +++K PL + +Y Sbjct: 288 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKT----PLHASQQ-DYIK 342 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S +L I+ND+LD SK+E+GKM L P +L E + + ISL+ A EK + + Sbjct: 343 TIEKSATNLLGIINDILDFSKLEAGKMELENMPFALREVIDDTISLLANSAKEKDLELVV 402 Query: 689 SFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDT 744 +I + D V Q+ N++ NAI FT SG + + T E+V +R + DT Sbjct: 403 DIEPSINDNVSGDALRVSQVITNLVGNAIKFTDSGSVHLKMRLTSEEAEKVNVRCEITDT 462 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + FGQ +S R GTGLGL + K +++ G+ S P KG+ Sbjct: 463 GIGIDKPHQAQLFQAFGQADSSISRRFGGTGLGLIITKRLINRMGGQIGCISAPGKGSTF 522 Query: 805 EIIFPLYDTSHP 816 PL + +P Sbjct: 523 WFTLPLKLSPYP 534 >gi|152997384|ref|YP_001342219.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150838308|gb|ABR72284.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 902 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 91/266 (34%), Positives = 144/266 (54%), Gaps = 12/266 (4%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KNQRFG 616 M+DI+E K +L AK+ AE+ S KS FLA +SHEIRTPL AIIG++++I ++ + Sbjct: 413 MNDITEQKYVSMELEQAKEAAEQASQAKSHFLANMSHEIRTPLNAIIGYAQLISEDNQLT 472 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + R++ A+ +G+ +L ++ND+LDI++IESG++ LH + V+L VS+ L Q Sbjct: 473 GVSRTRFLSIAS----AGHRLLGLINDILDIARIESGRLVLHEQKVNLCREVSQISKLFQ 528 Query: 677 LYANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A EK + LI + + D +QI N+L NA+ FT G + + + Sbjct: 529 GQAQEKGLELIVECDIDERRFVWIDPVKFQQIITNLLGNAVKFTDQG--YVKAVVQIVED 586 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + + + DTG G+ ++ PF Q + + G GTGLGL L+ +V G + Sbjct: 587 RIHISIEDTGPGIEAELMDHLFTPFIQ-GKAGEASG-GTGLGLSLSTTLVKLMNGTLSVK 644 Query: 796 STPAKGTLIEIIFPL--YDTSHPHDC 819 S+ GT I + PL + S DC Sbjct: 645 SSEGVGTQIIVDLPLSKVEDSESTDC 670 >gi|108808871|ref|YP_652787.1| hybrid sensory histidine kinase BarA [Yersinia pestis Antiqua] gi|167398949|ref|ZP_02304473.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|108780784|gb|ABG14842.1| Hpt sensor hybrid histidine kinase [Yersinia pestis Antiqua] gi|167051453|gb|EDR62861.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 927 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/238 (35%), Positives = 130/238 (54%), Gaps = 8/238 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ S KS+FLA +SHE+RTPL +IGF+ Q P +Y Sbjct: 277 ELGLAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFTR----QTLKTSLTPTQTDYLQT 332 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RS N +L I+ND+LD SK+E+ K+ L P SL E + E I L+ A+EK + + Sbjct: 333 IQRSANNLLCIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLH 392 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVR--DTG 745 N++P ++L D ++QI N+L NAI FT G I++ ++++V L V DTG Sbjct: 393 INNDVPDQVLGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTG 452 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G++ + + + F Q S R GTGLGL + + +V G S + G++ Sbjct: 453 IGISESQQAQLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSI 510 >gi|94971085|ref|YP_593133.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94553135|gb|ABF43059.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 1326 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 141/252 (55%), Gaps = 10/252 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + DI+E K+ + +L A++ AE + KSDFLA +SHEIRTP+ AIIG S + Sbjct: 557 VAFRDITERKKNEAELRRAREAAEDATRTKSDFLANMSHEIRTPMNAIIGMSHLALKTNL 616 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 +P+ +Y N I S + +L ++ND+LD SKIE+GK+N+ SL++ + +L+ Sbjct: 617 ----SPQQRDYLNKIQISSHHLLGVINDILDFSKIEAGKLNVESIDFSLEKVLETLANLI 672 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST--THT 732 A+ K + + + ++P ++ D + QI N SNA+ FT G+I+I Sbjct: 673 GEKASAKGLELIFDISPDVPHNLIGDPLRLGQILTNYASNAVKFTEH-GEIVIGAKVQER 731 Query: 733 SNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 +++EV+L VRDTG+G+T + + + F Q S + GTGLGL ++K + G Sbjct: 732 TDDEVLLYFAVRDTGLGLTAEQKARLFQSFQQADTSTTRKHGGTGLGLAISKQLSALMHG 791 Query: 791 KFYIFSTPAKGT 802 + + S P KG+ Sbjct: 792 EVGVESEPGKGS 803 >gi|49474858|ref|YP_032899.1| sensor histidine kinase protein [Bartonella henselae str. Houston-1] gi|49237663|emb|CAF26846.1| Sensor histidine kinase protein [Bartonella henselae str. Houston-1] Length = 821 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 100/365 (27%), Positives = 185/365 (50%), Gaps = 27/365 (7%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 L+ S+G+ + +G + +N A+SKL+ P + + +E + + Y + Sbjct: 465 LDKLSEGVVVFGTDGCLRLSNPALSKLWSLP--------YNLLVEGTHITQLQSYCS--- 513 Query: 518 SLDLRQTLE---KITLGSTKEEKLLSLRIIIKK--------LPFSSCYS-LTMHDISEWK 565 L LRQ + K G +E S R+ +K +P + + LT ++++ Sbjct: 514 PLTLRQEWDWFTKFITGFAEERDTYSGRMDLKNGMIIDYTLVPLPNGETMLTFVNVTDTV 573 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 L + E +++F+ VS+E+RTPLT IIGFS+++++Q FGP+ N R E Sbjct: 574 HVARALQEKNEALESADRLRNEFVQHVSYELRTPLTNIIGFSDILRDQIFGPI-NERQQE 632 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y +I +L+IVND+LD++ +++G M L +PV++ +A+ +A++ V+ N + I Sbjct: 633 YLGHIHSESGSLLNIVNDILDLATLDAGIMELDIKPVNIADAMVQAVARVEERLNGRHIT 692 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + + ++ I D + QI +N+LSNAI+F I +++++ V + G Sbjct: 693 LLQQISPSLNFISVDATRLHQIFVNVLSNAINFATEASTIEFC-AEEKDDDIVFSVHNEG 751 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 + L++ K F +S G GLGL L K+ V+ + G+ IF+ +GT ++ Sbjct: 752 SDIPEDILDRIFKRFS--SHSHHGGRAGAGLGLSLVKSFVELHGGRVEIFTGTGQGTTVK 809 Query: 806 IIFPL 810 FP+ Sbjct: 810 CFFPI 814 >gi|302340321|ref|YP_003805527.1| integral membrane sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301637506|gb|ADK82933.1| integral membrane sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 862 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/251 (33%), Positives = 136/251 (54%), Gaps = 10/251 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ + +L AK AE + K+ FLA +SHEIRTP+ AI+GF+E+++ + +PR Sbjct: 356 KRSERELRRAKNEAESANRTKTIFLANMSHEIRTPMNAILGFTEILEAEE----RDPRRR 411 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +Y I+ SG +L I+NDLLD+SK+E+ K+ L EP + + E + A +K + Sbjct: 412 KYIEAINSSGTTLLAIINDLLDLSKVEADKIVLKPEPTDITSLMEELRYIYAPLAEKKHL 471 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILR 740 ++ A P +L D ++QI +N++ NAI FT GG I+ T +EE V LR Sbjct: 472 ILDVEIATATPEALLIDRTRLRQILVNLVGNAIKFTTVGGVRIVINTWKQSEESTSVDLR 531 Query: 741 --VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V D+G G+ + E+ F Q + + GTGLGL +++ + G + S+P Sbjct: 532 IDVADSGPGIAVSDQERIFGIFEQGEVAWDRKYGGTGLGLAISRRLSTLMGGTISLTSSP 591 Query: 799 AKGTLIEIIFP 809 +G + I P Sbjct: 592 GEGAIFSIELP 602 >gi|56752287|ref|YP_172988.1| two-component system sensory histidine kinase [Synechococcus elongatus PCC 6301] Length = 937 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 141/247 (57%), Gaps = 6/247 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ ++L A++ AE + KS FLA +SHE+RTPL AIIG+SE++ + + + Sbjct: 418 RETNDRLEQAREQAEAANQAKSAFLANMSHELRTPLNAIIGYSEMMMEEAEDGIEVEELL 477 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ--LYANEK 682 I+ +G +L+++N +LD+SKIE+G+M L+ E SL E ++ S+++ + N+ Sbjct: 478 PDFRKINNAGKHLLELINSILDLSKIEAGRMELYLESFSLPELINGVKSIIKPLIEKNQN 537 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 ++L+ +I + AD+ ++Q LN+LSNA FT G I ++V+ +V Sbjct: 538 QLLV--DCPADIGLMTADVTKLRQTLLNLLSNASKFTHQG--TIQLQVAAQGDQVVFKVV 593 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D+G+GM+ ++++ + F Q +S + GTGLGL +++ ++ GK + S +G+ Sbjct: 594 DSGIGMSPEQIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGKITVESVLGEGS 653 Query: 803 LIEIIFP 809 I P Sbjct: 654 TFTITLP 660 >gi|313113963|ref|ZP_07799519.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623726|gb|EFQ07125.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 982 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 98/343 (28%), Positives = 169/343 (49%), Gaps = 21/343 (6%) Query: 481 VSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 V +L G P +++ + + ++ P ++L +LS R+ + TKE + Sbjct: 366 VERLLGIPWKEVRQDARALAALHPKDDPDRDKNFLEGLLSGQQREWDFEFEHRETKERRW 425 Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 + ++ + Y L + D + +Q LS A AE + KS FL+ +SH+IRT Sbjct: 426 FHNIAMGSEVEGRTKYILVLSDRTADRQVNQALSDAVAAAETANRAKSTFLSNMSHDIRT 485 Query: 599 PLTAIIGFSEVIKNQRFGPLGN----PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 P+ AIIGF+ + L N R +Y S N +L ++ND+LD+S+IESGK Sbjct: 486 PMNAIIGFTTL-------ALSNIDDKNRVKDYLAKTLASSNHLLSLINDVLDMSRIESGK 538 Query: 655 MNLHFEPVSLDEAVSEAISLV--QLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 ++L V+L + + + ++V Q+YA + + + + + D + Q+ LN+L Sbjct: 539 IHLEEVEVNLSDVLHDLKTIVSGQIYAKQLELYMDAMDVTD-EDVYCDKTRLNQVLLNLL 597 Query: 713 SNAIHFTPSGGQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 SNAI FTP+GG + + + + RV+D G+GM+ +K +PF + S Sbjct: 598 SNAIKFTPAGGTVSVRVRQLAGAVRGCGQYEFRVKDNGIGMSQEFAKKIFEPFERERTST 657 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 R +GTGLG+ + K +VD G + + KG+ I P+ Sbjct: 658 VSRIQGTGLGMAITKNIVDMMGGTIEVQTAQGKGSEFIIRVPM 700 >gi|297625139|ref|YP_003706573.1| histidine kinase [Truepera radiovictrix DSM 17093] gi|297166319|gb|ADI16030.1| histidine kinase [Truepera radiovictrix DSM 17093] Length = 379 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 96/365 (26%), Positives = 174/365 (47%), Gaps = 18/365 (4%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L + LE + D +A + G +++ N A+ L G ++ + + P+ + Sbjct: 7 LAAALEVSFDALAALE-GGRVVAANGALGALVGCAPHELWGRALGSLVRVEPPA--EGGV 63 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---------CYSLTMHDISEW 564 E L + +TL KE L + ++ + F SL S Sbjct: 64 LEALRRAPQPLEGTLTLWGGKE---LPVELLWRPWRFQGRPVELVAVRGVSLATSAQSAL 120 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ + L E+ + + +FL +SHE+RTPLT++IG+++V+ ++ GPL N + Sbjct: 121 RRYQATLERKNSDLERANRVQREFLGILSHELRTPLTSVIGYAQVLGDEIIGPL-NDKQR 179 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 YA I SG ++ +++DLLD+S++E+G + L PV++ E + ++ V A K + Sbjct: 180 AYAETIYTSGLQLMRLIDDLLDLSRLEAGDVALQRRPVAVAELLRAGVAGVGAEARAKGL 239 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + + D + Q+ +LSNA+ FTP GG++ +S EV+L VRD Sbjct: 240 SVTLQPPPEAA-LYGDPARLAQVLGALLSNAVKFTPLGGRVWVSA-ELRESEVVLMVRDD 297 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ E PF + S + G GLGL LA+ +V+ + G+ ++ S +G+ Sbjct: 298 GIGIAPEHHEGVFSPFFLVDASSARQHRGAGLGLALARRIVELHGGRIWVASELGRGSTF 357 Query: 805 EIIFP 809 + P Sbjct: 358 YVALP 362 >gi|149918695|ref|ZP_01907183.1| Signal transduction histidine kinase [Plesiocystis pacifica SIR-1] gi|149820536|gb|EDM79950.1| Signal transduction histidine kinase [Plesiocystis pacifica SIR-1] Length = 679 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/257 (29%), Positives = 141/257 (54%), Gaps = 13/257 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D+S +++ ++ A + K +FLA VSHE+RTPL +I+GF++++ + Sbjct: 358 EDVSTYQRALDRTHDADQ-------AKGEFLAAVSHELRTPLNSIMGFAQLLLETKL--- 407 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N +E I G + +++ D+LD+S IESG+++L + +LDE V+E + + Q Sbjct: 408 -NDSQVEDVKLILAGGRQLHELIADILDLSMIESGELDLRVQHCALDELVAELVDIHQAQ 466 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 ++ + + A+++P I D R + Q+ N++SNAI FT + G + + ++ V Sbjct: 467 VRDRELELVADVADDLPTIECDRRRIGQVLTNLMSNAIKFTET-GSVTVRARLEQDDYVS 525 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V DTG+G+ EL + + Q ++ + +GTGLGL +A+ +V A+ G+ ST Sbjct: 526 IAVIDTGIGIAESELPGVFEEYRQ-AGERKRKAKGTGLGLAIARRIVQAHGGRLEAESTL 584 Query: 799 AKGTLIEIIFPLYDTSH 815 +G+ + PL + H Sbjct: 585 GEGSTFRLTLPLDASEH 601 >gi|197119323|ref|YP_002139750.1| HAMP/PAS domain-containing phosphate sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197088683|gb|ACH39954.1| phosphate sensor histidine kinase, HAMP and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 584 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 106/387 (27%), Positives = 181/387 (46%), Gaps = 60/387 (15%) Query: 444 KRKMEI---EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF-------GYPVEDIL 493 +R++E+ E QL +IL +G+ + +R+ ++ N A +F G P+ I Sbjct: 236 ERQLELISSEKNQLDAILNGMGEGVMVTDRDAVVTLVNPAFCTMFATGAELQGRPLLQIT 295 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 R P + E+LS Q E I L K +++ +P Sbjct: 296 RHPD-----------LYAACREVLSARQEQHQE-IALAGGKT-------VLVHWVPLRDG 336 Query: 554 YSL-----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 L HDIS +K+ +KI + DF+A VSHE+RTP+T I G++E Sbjct: 337 DGLQGAVAVFHDISAFKR-------VEKI-------RRDFVANVSHELRTPVTVIKGYAE 382 Query: 609 VIKNQRFGPLGNPRYIE-----YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 + + +P E N+ DR LV DLL +S++ESG+M + +PV+ Sbjct: 383 TLLSGALAA--DPERAERFLLIIQNHADRLSGLV----RDLLTLSELESGEMGMQLKPVA 436 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 LDEA+ +A+ LV EK + + + AD ++Q+ +N+L NAI ++ +G Sbjct: 437 LDEAIRQALLLVGQRGEEKGVQLEQPAGEAGLTVQADRGRLEQVLINLLDNAIKYSETGK 496 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + + T + V + VRD+G+G+ +L + + F ++ ++ GTGLGL + K Sbjct: 497 SVGVETAR-EGDLVRVSVRDSGIGIPEKDLPRLFERFYRVDEARSRDNGGTGLGLSIVKH 555 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL 810 +V A+ G + S KG++ P+ Sbjct: 556 IVQAHGGTLEVKSEQGKGSVFSFTLPI 582 >gi|310826953|ref|YP_003959310.1| hypothetical protein ELI_1361 [Eubacterium limosum KIST612] gi|308738687|gb|ADO36347.1| hypothetical protein ELI_1361 [Eubacterium limosum KIST612] Length = 933 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 80/254 (31%), Positives = 142/254 (55%), Gaps = 15/254 (5%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + ++ + +Q + L A + A+ + KS FLA++SH+IRTP+ AIIG S + +Q Sbjct: 524 LEEMEQEEQNRKVLLAAYEAAKTANEAKSSFLAQMSHDIRTPMNAIIGMSSIAASQ---- 579 Query: 618 LGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + NP+ + + I+ S +L ++N++LD+SKIE GK+ L EP L E + + ++V+ Sbjct: 580 INNPQKVKDCLEKINLSSKHLLALINEILDMSKIEKGKIALAEEPFCLSEVIEDISAMVR 639 Query: 677 LYANEKR---ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 A EK +I +NI ++ D ++Q+ LN++SNAI +T +GG+I+++ S Sbjct: 640 TEAAEKNHELTVIIKDIEHNI--LIGDAGRIRQVLLNLISNAIKYTLNGGEILLTVQEVS 697 Query: 734 NE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + + V D G+GM L+ PF + + Q + +GTGLG+ +++ +V A Sbjct: 698 GKISGYGSFVFTVEDNGIGMDEDFLDYIFVPFSRAEDPQVQKIQGTGLGMSISQKIVAAM 757 Query: 789 MGKFYIFSTPAKGT 802 G + S KG+ Sbjct: 758 QGNIQVESEKGKGS 771 >gi|261342213|ref|ZP_05970071.1| sensor protein GacS [Enterobacter cancerogenus ATCC 35316] gi|288315547|gb|EFC54485.1| sensor protein GacS [Enterobacter cancerogenus ATCC 35316] Length = 919 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + NP ++ + Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSEL----NPTQRDHLHT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLTIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 N++P ++ D ++Q+ N++ NAI FT SG I++ SN +V + V RDTG Sbjct: 394 IKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNNKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V G S P KG+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNKGS 510 >gi|149925433|ref|ZP_01913697.1| PAS/PAC domain protein [Limnobacter sp. MED105] gi|149825550|gb|EDM84758.1| PAS/PAC domain protein [Limnobacter sp. MED105] Length = 905 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 132/235 (56%), Gaps = 8/235 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 AK++AE S K +FL+ +SHEIRTPL A++G + ++K + + +E+ ++ Sbjct: 378 QAKELAESASKAKGEFLSNISHEIRTPLNAVVGLAYILKQSKL----DSSQLEFVEKLEN 433 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 +G ++D+V+ +LD+SKIE+G M L P S + + L+ +K I + A Sbjct: 434 AGRGLIDLVSGVLDVSKIEAGAMELETRPFSARQLMDSLADLMTGSLADKPIEFVVAVAP 493 Query: 693 NIP-RILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEEVILR--VRDTGVGM 748 N+P +++ D ++Q+ +N+ NAI FT +G ++ I+ + +LR V+DTG+GM Sbjct: 494 NVPDQLVGDETKLRQVLVNLAGNAIKFTENGYVKVGITLDQLDTQHCVLRFIVQDTGLGM 553 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +++ + F Q +S R GTG+GL L++ +V+ G S P +G+L Sbjct: 554 DAGAMKRLFQSFSQADSSISRRFGGTGIGLALSQKLVELMGGTISAVSAPGQGSL 608 >gi|302504154|ref|XP_003014036.1| hypothetical protein ARB_07756 [Arthroderma benhamiae CBS 112371] gi|291177603|gb|EFE33396.1| hypothetical protein ARB_07756 [Arthroderma benhamiae CBS 112371] Length = 2418 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 134/249 (53%), Gaps = 21/249 (8%) Query: 573 HAKKIAEKESSH-----------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 H KIAE E++H KS FLA +SH++RTP+T +IG SE++K + +P Sbjct: 1871 HKAKIAEVEANHNVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKL----DP 1926 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + Y I + +L ++ND+LD SK+E+GKM + P++L + ++E + ++ E Sbjct: 1927 KQDVYVESIRVCADTLLTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHRE 1986 Query: 682 KRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 K + + P +L D + QI +N+LSN+ FTP+G + + E Sbjct: 1987 KGLNTIEDLDSIDPDLLVMGDPVRLHQIFMNLLSNSYKFTPAGSVTVRAIVEEDTPEKIR 2046 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIF 795 V +V DTG+G++ +L + +PF Q +S G+GLGL + KA++ D G+ ++ Sbjct: 2047 VTCKVADTGIGISEEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQ 2106 Query: 796 STPAKGTLI 804 S +GT + Sbjct: 2107 SKEGEGTTV 2115 >gi|254446215|ref|ZP_05059691.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198260523|gb|EDY84831.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 542 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 131/245 (53%), Gaps = 7/245 (2%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H I ++ +LS AK+ AE S KSDFLA +SHE RTP+ I+G ++ N GP Sbjct: 140 HSIERYRL-MAELSKAKQKAEAASQAKSDFLAVMSHEFRTPMNGILGGINLLGNVCNGP- 197 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + E + + + L ++ D+LDISKIE+G M L +E S + +S +S V Sbjct: 198 ---QETELLSMMKQCAESQLTLIGDVLDISKIEAGGMELAYEGFSPRDLISSVLSAVSFS 254 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A EK + + +PR +++D R ++Q+ +N++ NA+ FT S G++ I V Sbjct: 255 AREKGVKLAVDIDRGLPRELVSDARRLRQVLMNLVGNAVKFT-SEGEVRIHARKFDGCLV 313 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 RV DTG+G++ ++ F Q+ +S R +GTGLGL + K +V G + S Sbjct: 314 EFRVTDTGIGISPKYIDSIFDTFTQVDSSYSRRYQGTGLGLAICKRLVKMLGGTIRVESK 373 Query: 798 PAKGT 802 +G+ Sbjct: 374 VGRGS 378 >gi|160941698|ref|ZP_02089025.1| hypothetical protein CLOBOL_06594 [Clostridium bolteae ATCC BAA-613] gi|158435195|gb|EDP12962.1| hypothetical protein CLOBOL_06594 [Clostridium bolteae ATCC BAA-613] Length = 1301 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/263 (29%), Positives = 137/263 (52%), Gaps = 22/263 (8%) Query: 564 WKQEKNKLSH----------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 W E+ KL K A+ S K+DFL+R+SHEIRTPL AI+G + + +N Sbjct: 898 WNDEQRKLLEELSKIIPSFVMKARADAVSQAKTDFLSRMSHEIRTPLNAIVGMTSIARNV 957 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 R +E + ++ S ++ ++ND+LD+S+IESGKM L+ +P+ +++ V Sbjct: 958 ---ADDRDRVLECLDKLETSNQYLISLINDILDMSRIESGKMELNVQPMDMEDFVRSLEG 1014 Query: 674 LVQLYANEK--RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT- 730 +++ A +K R ++ + + LR ++Q+ +NI+ NA+ FT GG +I S T Sbjct: 1015 MMRPQAEQKGLRFIVENRCCQGLALVTDRLR-LEQVLINIIGNAVKFTGEGGDVIFSITP 1073 Query: 731 ---HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + + + V+DTG+G+ + ++ F Q + ++ GTGLGL ++ +V Sbjct: 1074 EEGSSGGQRLTFSVKDTGIGIASEAMDSIFNAFEQAEKNTSVKYGGTGLGLAISSRLVQM 1133 Query: 788 NMGKFYIFSTPAKGTLIEIIFPL 810 G + S +G+ E F L Sbjct: 1134 MGGTLGVRSVLGEGS--EFYFTL 1154 >gi|121603887|ref|YP_981216.1| integral membrane sensor hybrid histidine kinase [Polaromonas naphthalenivorans CJ2] gi|120592856|gb|ABM36295.1| integral membrane sensor hybrid histidine kinase [Polaromonas naphthalenivorans CJ2] Length = 1175 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/254 (32%), Positives = 138/254 (54%), Gaps = 8/254 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L M +I +Q L AK++A++ + KS +++ +SHE+RTPL +I+G+++++ Sbjct: 682 LLMQEIESHRQTDQALQQAKRVADQANQAKSRYISAISHELRTPLNSILGYAQLMGEDAS 741 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P P + + I R G +L ++ LDI++IE+GK+ L+ P+ + V E + Sbjct: 742 IP---PHRQQAVSVIKRGGEHLLSLIEGTLDIARIEAGKLTLNVRPMQFADCVHEVAGMF 798 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 +L A K + A ++P ++ AD + V+Q+ +N+L NAI FT GQ+ H + Sbjct: 799 ELQAAAKGLRFAFEAAGHLPELVRADEQRVRQVLINLLGNAIKFTAE-GQVTFRVRH-AR 856 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPF--GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 E + + DTG GM+ ELEK +PF G G GLGL +AK + D G+ Sbjct: 857 EMAHIDIEDTGPGMSAAELEKIFEPFARGSTAGQSVGGSSGAGLGLTIAKMLTDLMGGEM 916 Query: 793 YIFSTPAKGTLIEI 806 + STP KG++ I Sbjct: 917 TVVSTPGKGSVFRI 930 >gi|297569592|ref|YP_003690936.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296925507|gb|ADH86317.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 807 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 123/227 (54%), Gaps = 10/227 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KSDFLA +SHEIRTP+ +IG + ++ G L + + YA I SG +L I+ND+ Sbjct: 302 KSDFLAHMSHEIRTPMNGVIGMTALLLA---GDL-DEQQRHYAGVIKASGEALLRIINDI 357 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRS 703 LD++KIE+G++ L SL ++E +L+Q A K + ++ A ++ PR+ D Sbjct: 358 LDLAKIEAGRLELVSRDFSLPALLAEIFTLLQPEAAAKGLALKEQVAADLPPRLRGDDVR 417 Query: 704 VKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 ++QI LN+L NAI FT G ++ +S H E+ VRDTG G+ ++ PF Q Sbjct: 418 LRQILLNLLGNAIKFTDHGEVELSVSGQH----EICFSVRDTGPGVPPELQQQIFAPFEQ 473 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + R GTGLGL + + + G + STP G + P Sbjct: 474 AGAADRRRPAGTGLGLAICRRLAQLMEGSLRVESTPGAGATFHCVLP 520 >gi|229839016|ref|ZP_04459175.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Yersinia pestis biovar Orientalis str. PEXU2] gi|229695382|gb|EEO85429.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Yersinia pestis biovar Orientalis str. PEXU2] gi|262363147|gb|ACY59868.1| two-component regulatory protein [Yersinia pestis D106004] Length = 927 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/238 (35%), Positives = 130/238 (54%), Gaps = 8/238 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ S KS+FLA +SHE+RTPL +IGF+ Q P +Y Sbjct: 277 ELGLAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFTR----QTLKTSLTPTQTDYLQT 332 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RS N +L I+ND+LD SK+E+ K+ L P SL E + E I L+ A+EK + + Sbjct: 333 IQRSANNLLCIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLH 392 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVR--DTG 745 N++P ++L D ++QI N+L NAI FT G I++ ++++V L V DTG Sbjct: 393 INNDVPDQVLGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTG 452 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G++ + + + F Q S R GTGLGL + + +V G S + G++ Sbjct: 453 IGISESQQAQLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSI 510 >gi|167423462|ref|ZP_02315215.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167057632|gb|EDR67378.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Mediaevalis str. K1973002] Length = 936 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/238 (35%), Positives = 130/238 (54%), Gaps = 8/238 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ S KS+FLA +SHE+RTPL +IGF+ Q P +Y Sbjct: 277 ELGLAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFTR----QTLKTSLTPTQTDYLQT 332 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RS N +L I+ND+LD SK+E+ K+ L P SL E + E I L+ A+EK + + Sbjct: 333 IQRSANNLLCIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLH 392 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVR--DTG 745 N++P ++L D ++QI N+L NAI FT G I++ ++++V L V DTG Sbjct: 393 INNDVPDQVLGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTG 452 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G++ + + + F Q S R GTGLGL + + +V G S + G++ Sbjct: 453 IGISESQQAQLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSI 510 >gi|166214085|ref|ZP_02240120.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Antiqua str. B42003004] gi|166204716|gb|EDR49196.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Antiqua str. B42003004] Length = 939 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/238 (35%), Positives = 130/238 (54%), Gaps = 8/238 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ S KS+FLA +SHE+RTPL +IGF+ Q P +Y Sbjct: 277 ELGLAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFTR----QTLKTSLTPTQTDYLQT 332 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RS N +L I+ND+LD SK+E+ K+ L P SL E + E I L+ A+EK + + Sbjct: 333 IQRSANNLLCIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLH 392 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVR--DTG 745 N++P ++L D ++QI N+L NAI FT G I++ ++++V L V DTG Sbjct: 393 INNDVPDQVLGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTG 452 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G++ + + + F Q S R GTGLGL + + +V G S + G++ Sbjct: 453 IGISESQQAQLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSI 510 >gi|22124721|ref|NP_668144.1| hybrid sensory histidine kinase BarA [Yersinia pestis KIM 10] gi|108810875|ref|YP_646642.1| hybrid sensory histidine kinase BarA [Yersinia pestis Nepal516] gi|229901084|ref|ZP_04516207.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Yersinia pestis Nepal516] gi|270489264|ref|ZP_06206338.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Yersinia pestis KIM D27] gi|21957537|gb|AAM84395.1|AE013683_8 sensor-regulator, activates OmpR by phophorylation [Yersinia pestis KIM 10] gi|108774523|gb|ABG17042.1| Hpt sensor hybrid histidine kinase [Yersinia pestis Nepal516] gi|229681809|gb|EEO77902.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Yersinia pestis Nepal516] gi|270337768|gb|EFA48545.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Yersinia pestis KIM D27] Length = 933 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/238 (35%), Positives = 130/238 (54%), Gaps = 8/238 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ S KS+FLA +SHE+RTPL +IGF+ Q P +Y Sbjct: 277 ELGLAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFTR----QTLKTSLTPTQTDYLQT 332 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RS N +L I+ND+LD SK+E+ K+ L P SL E + E I L+ A+EK + + Sbjct: 333 IQRSANNLLCIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLH 392 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVR--DTG 745 N++P ++L D ++QI N+L NAI FT G I++ ++++V L V DTG Sbjct: 393 INNDVPDQVLGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTG 452 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G++ + + + F Q S R GTGLGL + + +V G S + G++ Sbjct: 453 IGISESQQAQLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSI 510 >gi|34498098|ref|NP_902313.1| sensor/response regulator hybrid [Chromobacterium violaceum ATCC 12472] gi|34103953|gb|AAQ60313.1| probable sensor/response regulator hybrid [Chromobacterium violaceum ATCC 12472] Length = 1436 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 134/255 (52%), Gaps = 9/255 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+ K+ L AK+ AE+ S KS+F+A +SHEIRTP+ ++G E++ N R G Sbjct: 786 DVRAEKEATRMLESAKEEAERASRAKSEFVANMSHEIRTPMNGVLGMLELLSNTRLD--G 843 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R Y + + S ++ I+ND+LD SK+E+GK+ LDE + +++ ++A Sbjct: 844 VQR--SYLDMLQLSCRSLMSILNDILDFSKLEAGKLEAARARYDLDEVLGALAAMMSMHA 901 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNE 735 KR+ + + +P L D ++Q+ +N+ NAI FT G++ +S + Sbjct: 902 ARKRLELVIAVDPAVPAALVGDALRLQQVLVNLAGNAIKFTAE-GEVAVSVGREKRDGRD 960 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++ VRDTGVGM L PF Q +S R GTGLGL +++ +V+ G+ + Sbjct: 961 WLLFAVRDTGVGMEAPLLRTIFDPFIQADSSNTRRFGGTGLGLTISRRLVELMGGEIGVE 1020 Query: 796 STPAKGTLIEIIFPL 810 S P +G+ PL Sbjct: 1021 SRPGEGSRFWFALPL 1035 >gi|186684843|ref|YP_001868039.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186467295|gb|ACC83096.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1123 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 101/400 (25%), Positives = 191/400 (47%), Gaps = 47/400 (11%) Query: 436 EDVDTRINKRKMEI-----EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 ++++ R+ +R + E L +IL+ +DG+ + + G I N A ++G Sbjct: 511 QELEARVVERTAALQNTLAEAQGLNAILDNLADGLLVADTAGQITHFNPAFLTMYGLTAT 570 Query: 491 DI---LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 + R+ L + +H E+ S ++ T E+I G + + +++ Sbjct: 571 ALKGHYRELPISGLAELVARTQSHP-EEVFSAEVALTKERI--GQAVATAIF--KKTVEQ 625 Query: 548 LPFSSCY--SLTMHDISEWKQEKNKLSHAKKIAEKE-SSHKSDFLARVSHEIRTPLTAII 604 P + C+ +L + DI+ AEKE K+DF++ VSHE+RTPLT+++ Sbjct: 626 EPLA-CFGSALLIRDIT---------------AEKEIDKMKTDFISTVSHELRTPLTSVL 669 Query: 605 GFSEVIKNQ-------------RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 GF+ +IK + R R + N I + ++ND+LDI+K+E Sbjct: 670 GFASIIKEKLETDVFPIISTEDRKLQKTIKRVADNLNIIVSEAERLTSLINDVLDIAKME 729 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +GK+ +P+ E + A + + + + +P+I+ D + Q+ +N+ Sbjct: 730 AGKVEWQMQPLDPSELLDWATNSTAGLFETNGLQLVSEIEPGLPQIVGDRNRLLQVLINL 789 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 +SNA+ FT SG + ++ V + V DTG+G+ + K + F Q+ ++ + Sbjct: 790 ISNAVKFTESG--CVTCRVKQGHDGVCISVIDTGIGIAPEDQPKVFEKFRQVGDTLTDKP 847 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 +GTGLGLP+ K ++D + G+ ++ S P KG++ I P Y Sbjct: 848 KGTGLGLPICKQIIDHHGGRIWVESEPGKGSVFSFIIPTY 887 >gi|145600234|ref|YP_001164310.1| hybrid sensory histidine kinase BarA [Yersinia pestis Pestoides F] gi|153997576|ref|ZP_02022676.1| two-component regulatory protein [Yersinia pestis CA88-4125] gi|165936705|ref|ZP_02225272.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Orientalis str. IP275] gi|166010041|ref|ZP_02230939.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Antiqua str. E1979001] gi|167420808|ref|ZP_02312561.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167469899|ref|ZP_02334603.1| hybrid sensory histidine kinase BarA [Yersinia pestis FV-1] gi|218930398|ref|YP_002348273.1| hybrid sensory histidine kinase BarA [Yersinia pestis CO92] gi|229899582|ref|ZP_04514723.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Yersinia pestis biovar Orientalis str. India 195] gi|294505087|ref|YP_003569149.1| two-component regulatory protein [Yersinia pestis Z176003] gi|115349009|emb|CAL21970.1| two-component regulatory protein [Yersinia pestis CO92] gi|145211930|gb|ABP41337.1| Hpt sensor hybrid histidine kinase [Yersinia pestis Pestoides F] gi|149289213|gb|EDM39293.1| two-component regulatory protein [Yersinia pestis CA88-4125] gi|165915354|gb|EDR33964.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Orientalis str. IP275] gi|165990948|gb|EDR43249.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Antiqua str. E1979001] gi|166961614|gb|EDR57635.1| signal transduction histidine-protein kinase BarA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|229687074|gb|EEO79149.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Yersinia pestis biovar Orientalis str. India 195] gi|262367077|gb|ACY63634.1| two-component regulatory protein [Yersinia pestis D182038] gi|294355546|gb|ADE65887.1| two-component regulatory protein [Yersinia pestis Z176003] gi|320016581|gb|ADW00153.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 930 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/238 (35%), Positives = 130/238 (54%), Gaps = 8/238 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ S KS+FLA +SHE+RTPL +IGF+ Q P +Y Sbjct: 277 ELGLAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFTR----QTLKTSLTPTQTDYLQT 332 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RS N +L I+ND+LD SK+E+ K+ L P SL E + E I L+ A+EK + + Sbjct: 333 IQRSANNLLCIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLH 392 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVR--DTG 745 N++P ++L D ++QI N+L NAI FT G I++ ++++V L V DTG Sbjct: 393 INNDVPDQVLGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTG 452 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G++ + + + F Q S R GTGLGL + + +V G S + G++ Sbjct: 453 IGISESQQAQLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSI 510 >gi|170783492|ref|YP_001741985.1| putative signal transduction histidine kinase [Arthrobacter sp. AK-1] gi|150034979|gb|ABR66990.1| putative signal transduction histidine kinase [Arthrobacter sp. AK-1] Length = 644 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 84/255 (32%), Positives = 144/255 (56%), Gaps = 13/255 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI++ K+ + A AE+ + K +FL+R+SHE+RTPL AI+GF+++++N PL Sbjct: 252 DITDLKRAERAARDAMHEAERANRSKDEFLSRMSHELRTPLNAILGFAQLLQNL---PL- 307 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +P E A +I +G +L +VND+LDI+ IE+G + V + + +A+ L++ A Sbjct: 308 SPEAAESAGHILDAGKHLLALVNDVLDITWIEAGAPGITTAAVPAIDPIHQALQLIRPLA 367 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + I I + + R ILAD + ++Q+ LN+L NA+ F + G + + ++ Sbjct: 368 SASDIEIASDLHGALHRYILADTQRLRQVFLNLLGNAVKFNTAQGAVRVWCEEKAD---F 424 Query: 739 LR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI-F 795 LR + DTG GM + ++ KPF ++ S ++ EG+GLGL L+K +V G I Sbjct: 425 LRFFIMDTGPGMDESDAQRLFKPFVRLSQSAEV--EGSGLGLALSKRLVQEMGGDLGIEH 482 Query: 796 STPAKGTLIEIIFPL 810 + P +G+ + PL Sbjct: 483 TAPGEGSTFFVDMPL 497 >gi|288555625|ref|YP_003427560.1| multi-sensor hybrid histidine kinase [Bacillus pseudofirmus OF4] gi|288546785|gb|ADC50668.1| multi-sensor hybrid histidine kinase [Bacillus pseudofirmus OF4] Length = 539 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 137/252 (54%), Gaps = 9/252 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E +Q L +A+ AEK KSDFLA +SHE+RTPL +I+GFS+++ PL + + Sbjct: 290 ELEQANTSLVYAQAQAEKAHKAKSDFLAMMSHELRTPLNSILGFSQLLHQDTGTPL-SAQ 348 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + + I +SG +L ++ND+L + K+E+GK + F+ V LD V A+ + YA K Sbjct: 349 QLAKVDKILKSGRHLLTMINDILKLVKLENGKPFIEFQEVDLDAIVQAALREITPYAQLK 408 Query: 683 RILIRTS----FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 ++ + ++ I I +D ++Q+ LN+LSN++ + G I IS S V Sbjct: 409 KLKMNCEDLKLKSDQI--IYSDPVRLQQVLLNLLSNSVKYNREHGNITIS-YQVSEHTVT 465 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V DTGVG+++ E K PF + + EGTG+GL L K +V GK + S Sbjct: 466 VNVEDTGVGISSVEQSKIFDPFYRTEEF-SMEAEGTGIGLSLVKQIVTEMQGKIGVESQL 524 Query: 799 AKGTLIEIIFPL 810 +G+ I P+ Sbjct: 525 GEGSTFWIELPI 536 >gi|330936909|gb|EGH41034.1| PAS protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 975 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 86/263 (32%), Positives = 138/263 (52%), Gaps = 10/263 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ--RFGP 617 DI+E KQ + +L A +A++ + KS FLA +SHEIRTP+ AIIG E+ Q R G Sbjct: 670 DITERKQLEQQLQEAMHLADQANEAKSAFLASMSHEIRTPMGAIIGLLELECEQALRLGK 729 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + + + ++ A+ RS ++ ++ + LD+++IE+G M L SL E I L Sbjct: 730 IPS-QGLQVAH---RSATELIALIGESLDLARIEAGGMQLSLAVTSLQELFDGVIELFSA 785 Query: 678 YANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNE 735 A EK + +R F+ D ++Q+ N+L NA+ FT G ++ + TH S E Sbjct: 786 QAGEKGVELRLEFSGQARGDYWLDPFRLRQVLHNVLGNALKFTRQGAVVVTLDVTHDSPE 845 Query: 736 EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +R ++D+G G+ ++ +PF Q + G+GLGL + + +V+ G Sbjct: 846 STRVRIGIQDSGEGIDPQRQQQVFQPFTQASDDTAAHYGGSGLGLSITRQLVELMKGDIS 905 Query: 794 IFSTPAKGTLIEIIFPLYDTSHP 816 + S P KGTL+ I PL S P Sbjct: 906 LHSEPGKGTLVTIDLPLTRVSEP 928 >gi|317152332|ref|YP_004120380.1| ATPase ATP-binding domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316942583|gb|ADU61634.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 765 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 86/283 (30%), Positives = 145/283 (51%), Gaps = 21/283 (7%) Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 LGS K + +++ I + + + L + NKLS A+++AE KS FL Sbjct: 333 LGSIKANRTVNILIALVAVVIALIIGLLV---------ANKLSRAREMAESADEAKSQFL 383 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 AR+SHEIRTP+ A++G E++ G+ R Y + +G + ++V D+LD+S+ Sbjct: 384 ARMSHEIRTPMNAMLGAGELLAETSLN--GDQR--RYVSIYQSAGEHLRELVRDVLDLSR 439 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIA 708 ESG+ L P SL A+ +A ++ L A K + +R + P R++ D +++Q+ Sbjct: 440 FESGRFRLEETPFSLRSAIDKACAVFTLEARNKGLDLRCCVDPDTPDRLVGDPTALRQVL 499 Query: 709 LNILSNAIHFTPSG----GQIIISTTHTSNEEVI---LRVRDTGVGMTNYELEKAMKPFG 761 +N+L N+I FTP G G + H ++ + V+DTG+G+ + E + F Sbjct: 500 VNLLGNSIKFTPQGSVSLGVRSVGAGHEADGQTCTLEFTVQDTGIGIPVDKQEVIFERFS 559 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 Q S + GTGLGL + + +V G + S P +GT + Sbjct: 560 QADGSTSRKYGGTGLGLSICRNLVTFMGGSIAVDSQPGEGTTL 602 >gi|89094968|ref|ZP_01167898.1| serine/threonine kinase with two-component sensor domain [Oceanospirillum sp. MED92] gi|89080752|gb|EAR59994.1| serine/threonine kinase with two-component sensor domain [Oceanospirillum sp. MED92] Length = 2109 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 110/364 (30%), Positives = 176/364 (48%), Gaps = 24/364 (6%) Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522 +GI + +G LS N A++ L GY D T Q ++H + L+ Sbjct: 1493 EGIFRASPDGHFLSANPALATLLGYRSMDEFHDEITDIASQCF--YVDH--ERVAFLEKL 1548 Query: 523 QTLEKITLGSTKEEKL--------LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574 T KI T+ K LS R ++ Y ++ DI+E ++ K A Sbjct: 1549 DTQHKILNFETRWRKKSGEPIYVSLSARKVLDASGQVQYYEGSLTDITE-RKAKEAAEQA 1607 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 + AE E+ KS FLA +SHEIRTP+ I+G ++++K + N E + I +G Sbjct: 1608 RHEAEAENEAKSMFLATMSHEIRTPMNGILGMAQLMKQGQLNSEQN----EQIDTIYNAG 1663 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L I+N++LD SKIESG++ L +P + + + E +L + A EK + I + + Sbjct: 1664 QTLLSILNNILDYSKIESGQLELEEKPFLIQDVMDEIYNLFKPVAQEKSLQIVPNIERTL 1723 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR----DTGVGMTN 750 P + D R + QI +N+ SNA+ FT G I IS + + L+ R DTG+G+ Sbjct: 1724 PAVSGDPRVLSQILMNLCSNALKFTHQ-GYIRISCEGLPDTQDKLKTRFTIEDTGIGIPE 1782 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT--LIEIIF 808 + + F Q +S R GTGLGL + + +++ G+ ST +GT E+ F Sbjct: 1783 KAQSRIFQHFTQADSSITRRYGGTGLGLAITRQIIERLNGEIGFESTEEQGTTFWFELSF 1842 Query: 809 PLYD 812 P+ D Sbjct: 1843 PITD 1846 >gi|330889404|gb|EGH22065.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. mori str. 301020] Length = 905 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR +Y Sbjct: 258 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQFDYLGT 313 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ + + Sbjct: 314 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 373 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 + P L+ D ++QI N++SNAI FT G + + EE + + V+DTG Sbjct: 374 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 433 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 434 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 490 >gi|239995910|ref|ZP_04716434.1| histidine kinase response regulator hybrid protein [Alteromonas macleodii ATCC 27126] Length = 542 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/232 (35%), Positives = 133/232 (57%), Gaps = 4/232 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ S KSDFL+ VSHEIRTPL AI FS++++ + + +++ +SG +L Sbjct: 168 ERTSQFKSDFLSYVSHEIRTPLNAINTFSQLLEGEAQKLNLPSSFTTPLSHVSQSGERLL 227 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RI 697 +IVN +LDI +IE+GKM + V+ + + SL ++ A + I+ TS + +P + Sbjct: 228 EIVNSVLDIKQIEAGKMRVMPRAVNTKDFFTHLFSLTKIRAEDSGIVFSTSIDDAVPDSL 287 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D Q+ALN+LSNAI FT + G+ + + N +VI V D G+GM++ + ++ Sbjct: 288 FFDDTKFGQVALNLLSNAIKFT-NHGKSVKAQVKYKNGKVIFNVIDQGIGMSDDDQKRLF 346 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 PF ++ N++QI GTGLGL ++K +V+ G + S GT I + P Sbjct: 347 TPFERMENARQI--SGTGLGLNISKRLVELMDGSIKVSSKLNHGTRISVTLP 396 >gi|159900917|ref|YP_001547164.1| integral membrane sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893956|gb|ABX07036.1| integral membrane sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 497 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/253 (32%), Positives = 133/253 (52%), Gaps = 4/253 (1%) Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 R+ L Y + S+ + +L A+ A++ ++ K+ FLA +SHE+RTPL Sbjct: 211 RVARTLLELEGAYEMQSRLNSQLQVLNKELEVARTAADEANTLKTRFLANMSHELRTPLN 270 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 AII F++ + R+G L R IE + + +L ++ND+LD+SKIE+G+M LH E Sbjct: 271 AIINFTQFLGKPRYGDL-TARQIELQERVLVNSEHLLGLINDILDLSKIEAGRMELHLEL 329 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 + L + ++ K + + + IP + D V+QI LN+LSNA FT S Sbjct: 330 LDLQPIFNGVMATAVGLTKSKGLNLESDVEEEIPPVRGDKVRVRQILLNLLSNAAKFTDS 389 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPL 780 GG I S+ V + V DTG G+ +EL + F Q+ + R +GTGLGLP+ Sbjct: 390 GG--ITLRAFESDGMVQISVIDTGAGIPAHELPLVFEEFHQVEQAASAQRQQGTGLGLPI 447 Query: 781 AKAMVDANMGKFY 793 ++ +V+ G + Sbjct: 448 SRHLVELQGGTMW 460 >gi|77919545|ref|YP_357360.1| two component hybrid histidine kinase/sensor response regulator [Pelobacter carbinolicus DSM 2380] gi|77545628|gb|ABA89190.1| two component hybrid histidine kinase/sensor response regulator [Pelobacter carbinolicus DSM 2380] Length = 833 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/245 (32%), Positives = 134/245 (54%), Gaps = 8/245 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ +KL+ A++ AE + KS FLA +SHEIRTP+ +IG +E++ PL + + Sbjct: 278 ELQKTVDKLAQARQAAETANHAKSRFLANMSHEIRTPMIGVIGVAELLSGT---PLSDHQ 334 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 E A+ I SG +L ++ND+LD SKIE+G++ + P +L + V E +SL+ A +K Sbjct: 335 R-ELAHMIHSSGESLLKVLNDILDFSKIEAGRLVVERVPFNLVDVVEEPLSLIAKNAQDK 393 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVI 738 ++ + P +L D ++QI N+L NA+ FT G +I + ++ + Sbjct: 394 KVELICRIQPGTPVSLLGDPARLRQIVFNLLGNAVKFTSEGEISVRIGCRDENCASASIF 453 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 L VRDTG+G+ + F Q +S GTGLGL + + ++D G ++ S Sbjct: 454 LEVRDTGIGIDREAQQAIFDAFSQADSSTTRHYGGTGLGLAIVRQLLDLMRGHIHLESEL 513 Query: 799 AKGTL 803 +G++ Sbjct: 514 GQGSV 518 >gi|45440163|ref|NP_991702.1| hybrid sensory histidine kinase BarA [Yersinia pestis biovar Microtus str. 91001] gi|162421785|ref|YP_001605547.1| hybrid sensory histidine kinase BarA [Yersinia pestis Angola] gi|45435019|gb|AAS60579.1| two-component regulatory protein [Yersinia pestis biovar Microtus str. 91001] gi|162354600|gb|ABX88548.1| signal transduction histidine-protein kinase BarA [Yersinia pestis Angola] Length = 921 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/238 (35%), Positives = 130/238 (54%), Gaps = 8/238 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ S KS+FLA +SHE+RTPL +IGF+ Q P +Y Sbjct: 277 ELGLAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFTR----QTLKTSLTPTQTDYLQT 332 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RS N +L I+ND+LD SK+E+ K+ L P SL E + E I L+ A+EK + + Sbjct: 333 IQRSANNLLCIINDVLDFSKLEADKLILEHIPFSLRETLDEVIILLAHTAHEKGLELTLH 392 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVR--DTG 745 N++P ++L D ++QI N+L NAI FT G I++ ++++V L V DTG Sbjct: 393 INNDVPDQVLGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTG 452 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G++ + + + F Q S R GTGLGL + + +V G S + G++ Sbjct: 453 IGISESQQAQLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSI 510 >gi|192359662|ref|YP_001981685.1| response regulator receiver domain-containing protein [Cellvibrio japonicus Ueda107] gi|190685827|gb|ACE83505.1| Response regulator receiver domain protein [Cellvibrio japonicus Ueda107] Length = 1061 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 128/241 (53%), Gaps = 8/241 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK+ A S K+DFLA +SHEIRTPL AIIG + V NP Y Sbjct: 505 ELIQAKEEALAASRAKADFLANMSHEIRTPLNAIIGLAHVALAMEM----NPNLRNYLQK 560 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + SG +L+++ND+L+ S++E+GK+ L +L + + AI+LV A K + ++ Sbjct: 561 MRASGEHLLEVINDILNFSRLEAGKLKLDQVEFALVDVIQRAINLVSDKAEAKGLSLQVE 620 Query: 690 FANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV--ILRVRDTG 745 A I P + D + QI +N+ +NA+ FT G Q+++ + + I+ VRDTG Sbjct: 621 IAPEISPWLKGDPLRLGQILINLCANAVKFTDQGCIQLLVQQKARRGDAINLIIDVRDTG 680 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ L +PF Q+ NS R EGTGLGL + K++ D + S KG+ Sbjct: 681 IGIAPGLLASLFQPFHQVDNSNTRRFEGTGLGLAICKSLADLMDAHLSVESEMGKGSCFR 740 Query: 806 I 806 + Sbjct: 741 L 741 >gi|152061169|dbj|BAF73628.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. tabaci] Length = 905 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR +Y Sbjct: 263 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQFDYLGT 318 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ + + Sbjct: 319 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 378 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 + P L+ D ++QI N++SNAI FT G + + EE + + V+DTG Sbjct: 379 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 438 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 439 IGLSSQDVRALFQAFSQADNSPSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 495 >gi|78062940|ref|YP_372848.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383] gi|77970825|gb|ABB12204.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383] Length = 530 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/250 (31%), Positives = 141/250 (56%), Gaps = 10/250 (4%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI + KQ A AE+ + KSDFL+ +SHE+R+PL AI+GF++++ Sbjct: 130 TVTDIDDRKQ-------ALAAAERANRAKSDFLSSMSHELRSPLNAILGFAQLMATD--S 180 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P P + I R+G +L+++ND+LD++KI++G++ + E VSLD+ + E S++ Sbjct: 181 PPPTPSQQASIDQILRAGWHLLELINDVLDLAKIDAGQVAISPESVSLDDVLRECDSMIV 240 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A ++ I + + AD VKQ+ +N+LSNA+ + G + ++ + Sbjct: 241 TQAGQRGIRMTFPQGEAPCHVRADRTRVKQVLVNLLSNAVKYNCPSGAVDVTCSAPVPGR 300 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V + V DTG G++ ++ + +PF ++ + EGTG+GL +AK +++ G + S Sbjct: 301 VRVSVSDTGPGLSPEQVGRLFQPFNRL-GQEAGPEEGTGIGLVVAKRLMELMGGGIGVDS 359 Query: 797 TPAKGTLIEI 806 TP KG++ I Sbjct: 360 TPGKGSVFWI 369 >gi|66816785|ref|XP_642392.1| histidine kinase [Dictyostelium discoideum AX4] gi|74841827|sp|Q86CZ2|DHKK_DICDI RecName: Full=Hybrid signal transduction histidine kinase K; AltName: Full=Protein sombrero gi|30230651|gb|AAP20874.1| sombrero SmbA [Dictyostelium discoideum] gi|60470136|gb|EAL68116.1| histidine kinase [Dictyostelium discoideum AX4] Length = 1213 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 91/286 (31%), Positives = 146/286 (51%), Gaps = 16/286 (5%) Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEI 596 ++ + III L F+ CY + + + KN +L+ AK A + + +FLA +SHEI Sbjct: 768 IIDVTIIIMTLIFTLCYQYFIDEAHRETKLKNAQLTIAKDAAIEAYQARQEFLATMSHEI 827 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL +IG + ++++ P P A + G+++L +VND+LD+SK+E+ +M Sbjct: 828 RTPLNGLIGMATLLRDSHNLP---PEEKTMAKAVKSCGDILLRLVNDILDLSKLEANQMG 884 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNA 715 L P + E + ++ ANEK I + ++ IP I L D + QI +N+ NA Sbjct: 885 LEHIPFRMRELTQQICHVLSGQANEKNIHLSCEVSDKIPSILLGDSGRILQILMNLTGNA 944 Query: 716 IHFTPSG-GQIIISTTHTSNEEVIL---------RVRDTGVGMTNYELEKAMKPFGQIPN 765 + FT SG +III +E V L RV+DTG+G+ +K + F Q Sbjct: 945 LKFTQSGYVKIIIDLIEEESELVSLKKGEYNISFRVKDTGIGVPVESHQKIFEAFVQADP 1004 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-AKGTLIEIIFPL 810 S + G+GLGL L +V G+ +++ P G+ I PL Sbjct: 1005 SDSRKYGGSGLGLYLCAKLVRLMKGEIGVYNNPDCDGSTFWFILPL 1050 >gi|32477063|ref|NP_870057.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32447611|emb|CAD79210.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 652 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/238 (34%), Positives = 126/238 (52%), Gaps = 12/238 (5%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K+DFLA +SHE+RTPL +IIGFSEV+ Q L + YA+ I +SG L+L+++ND+ Sbjct: 401 KTDFLANMSHELRTPLNSIIGFSEVL--QGIDSLSEKQR-RYASNIQKSGRLLLEMINDI 457 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD++K+E+GKM + L V ++Q + +K I + ++P D + Sbjct: 458 LDLAKVEAGKMEVRRSEFQLSRLVGAQCDMIQSLSEDKNISLSVEVPEDLPVAYQDPNKL 517 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 QI N+LSNAI FTP GG I + ++ L V DTGVG+ + + + F Q Sbjct: 518 GQILNNLLSNAIKFTPEGGMITVRVVDLHDDRFRLSVTDTGVGVADEDQPIIFQKFRQ-- 575 Query: 765 NSQQIRGE-------GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 + + + G+ GTGLGL + K + G+ S +G+ +I P + H Sbjct: 576 SKKVLDGDGLTREFAGTGLGLSIVKELAVLLGGEIDFQSELGRGSTFWVILPYRLSDH 633 >gi|86142612|ref|ZP_01061051.1| PAS domain protein [Leeuwenhoekiella blandensis MED217] gi|85830644|gb|EAQ49102.1| PAS domain protein [Leeuwenhoekiella blandensis MED217] Length = 1175 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/250 (32%), Positives = 138/250 (55%), Gaps = 12/250 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS K+ + L A+K AE + KS+FLA +SHEIRTPL IIGF++++ P Sbjct: 635 DISNLKEMEYSLVEARKKAEAANRSKSEFLANMSHEIRTPLNGIIGFTDLLMQTSLAPFQ 694 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +Y + S N ++D++ND+LD SKIE+GK+ L+ E L E ++ + +V+ A Sbjct: 695 Q----KYMQTVHNSANTLMDLINDILDFSKIEAGKLELNEERTDLIELCTQTVDIVKHQA 750 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----- 733 ++K + + + ++ R + AD ++QI +N+L NA+ FT G++ ++ T ++ Sbjct: 751 HQKGLEMLLQISPDVKRFVQADSIRLRQILINLLGNAVKFTDQ-GEVALTVTASNTIAQE 809 Query: 734 NE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 NE E +RDTG+G+ + K F Q S + G+GLGL ++ +++ K Sbjct: 810 NEAEFKFEIRDTGIGIDPKNINKIFNAFDQEDVSTTRKYGGSGLGLTISNRLLNLMGSKL 869 Query: 793 YIFSTPAKGT 802 + S G+ Sbjct: 870 KVNSVQGTGS 879 >gi|229087144|ref|ZP_04219294.1| hypothetical protein bcere0022_37170 [Bacillus cereus Rock3-44] gi|228696212|gb|EEL49047.1| hypothetical protein bcere0022_37170 [Bacillus cereus Rock3-44] Length = 470 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 105/380 (27%), Positives = 187/380 (49%), Gaps = 50/380 (13%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTP 506 E++ +L +++E G+ +I+ G I NR+ ++F E+ L R + FL Sbjct: 123 EMQQDRLHTLIENMGSGMILIDSRGYISLVNRSYKEIFHVTDEEYLDRLYYEAFLH---- 178 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SC 553 EI+ L +E+I + K K + L + I++ F Sbjct: 179 -------AEIIEL-----VEEIFMTEVKVRKQMLLSLGIERKHFEVYGAPIIGTNHEWKG 226 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 227 IVLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD- 271 Query: 614 RFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + E + E Sbjct: 272 --GAMENQQFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKELLGEIK 329 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +++ + EK I ++ ++ ++ D +KQI +N+++NAI +TP+GG + ++ Sbjct: 330 MVLENKSQEKEISLQVDVLRHVS-VIGDPSRLKQIFINLVNNAIVYTPAGGTVSVALLED 388 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 389 EHNAYI-KVSDTGIGISTEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTI 447 Query: 793 YIFSTPAKGTLIEIIFPLYD 812 + ST +GT + P D Sbjct: 448 TVDSTVGEGTTFTVALPKAD 467 >gi|85705883|ref|ZP_01036979.1| sensor histidine kinase/response regulator [Roseovarius sp. 217] gi|85669471|gb|EAQ24336.1| sensor histidine kinase/response regulator [Roseovarius sp. 217] Length = 646 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 130/229 (56%), Gaps = 21/229 (9%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVI------KNQRFGPLGNPRYIEYANYIDRSGNLVL 638 KS FLA +SHEIRTP+ ++G +E++ + QR +A+ I SG +L Sbjct: 216 KSSFLANMSHEIRTPMNGVVGMAELLMETDLTEEQRL----------FASTIKTSGEALL 265 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RI 697 I+ND+LD SKIE+ K+ LH EP L+ + E ++L+Q+ A +K + + + +P R Sbjct: 266 VIINDVLDYSKIEAEKLVLHAEPFDLERCIHELVTLMQVNARDKGLELLVDYDLFLPTRF 325 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNE---EVILRVRDTGVGMTNYEL 753 + D ++QI N+L NA+ FT SG ++ ++ H E V + V DTG+G+ ++ Sbjct: 326 VGDPGRIRQIMTNLLGNAVKFTESGHVLVRVTGVHPDAEGRASVHVTVEDTGIGIPPDKI 385 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + F Q+ + + + EGTGLGL +++ ++ GK ++ S P KG+ Sbjct: 386 DHIFGEFNQVDDERNRKFEGTGLGLAISQKLIRLMGGKIWVDSEPGKGS 434 >gi|300865045|ref|ZP_07109872.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300336982|emb|CBN55022.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1122 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 90/272 (33%), Positives = 144/272 (52%), Gaps = 25/272 (9%) Query: 559 HDISEWK--QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 DI++ K +E K++ + A + KS FLA +SHE+RTPL AIIG+S+++K + Sbjct: 854 EDITQRKLAEEFQKVAQSAVAANQ---AKSAFLANMSHELRTPLNAIIGYSDLLK-EDAE 909 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 LG +I + I R+G +L +++D+LDISKIE+G+M L+ E + + + E I+ V+ Sbjct: 910 DLGAEEFISDLDRIQRAGKHLLGLISDILDISKIEAGRMELYLENFNPVDLIEEVIATVE 969 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---HTS 733 + + SF +N+ + AD +QI LN+LSNA FT G I I+ T Sbjct: 970 PLVMKNSNKLEVSFGSNLDEMYADPTKTRQILLNLLSNAAKFTKD-GTITITLTKDEKVG 1028 Query: 734 NEEV---------------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 NEE+ + +V DTG+GM+ +LE +PF Q S + GTGLGL Sbjct: 1029 NEEIFNGDIESEGDYLCFLLFQVADTGIGMSATQLEHLFQPFMQGDTSTTRQYGGTGLGL 1088 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +++ G + S G++ + P+ Sbjct: 1089 AISRHFCLMMGGDIEVESKLGSGSVFTVRLPV 1120 >gi|289648121|ref|ZP_06479464.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. aesculi str. 2250] gi|330866044|gb|EGH00753.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 917 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR +Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQFDYLGT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ + + Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 + P L+ D ++QI N++SNAI FT G + + EE + + V+DTG Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|83814352|ref|YP_446607.1| two-component sensor histidine kinase [Salinibacter ruber DSM 13855] gi|83755746|gb|ABC43859.1| two-component sensor histidine kinase [Salinibacter ruber DSM 13855] Length = 959 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 90/270 (33%), Positives = 138/270 (51%), Gaps = 12/270 (4%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEV 609 T+ DI++ K+ + L AK AE S KS FLA +SHEIRTPLT+IIGF+E+ Sbjct: 690 TIQDITDQKEREQALRTAKADAEAARQEAEEASRLKSAFLANISHEIRTPLTSIIGFAEL 749 Query: 610 IKNQRFG-PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 I ++ L + YA I+RSG +L+ + +L++SK++SG+M L PV L+E + Sbjct: 750 IGSEAGALDLSDSPLPGYATMIERSGKRLLETLEGVLNLSKLQSGQMKLETAPVDLNEQI 809 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 A+ ++ A EK +R D ++ + N++SNAI +T GG+I + Sbjct: 810 RWAVQELRPKAEEKG--VRLQLETGCAVAEGDEGGIQIVIRNLVSNAIKYTEQGGRIWVR 867 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + + + +L V DTG+GM E +PF Q EGTG+GL + V Sbjct: 868 SFQ-NEDRAVLEVEDTGIGMDPAVAESLFEPFRQASEGLNREYEGTGVGLAVTNKAVAQM 926 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 G + + +GT I P + HP D Sbjct: 927 DGSIEVDTEKGEGTRFTIHLPASE-EHPTD 955 >gi|186683956|ref|YP_001867152.1| hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186466408|gb|ACC82209.1| hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 609 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/256 (31%), Positives = 137/256 (53%), Gaps = 9/256 (3%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + I W+Q+ +LS++ + E+ + K+ FLA SHEIRTPL++IIGF+ ++ + P Sbjct: 206 LRHILSWQQQYQQLSNSNQELERTNQLKNQFLANTSHEIRTPLSSIIGFTNLLLAPGYEP 265 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 R EY N I SG +L ++ND+LD+SKIE+ ++ + +E V + S ++LV+ Sbjct: 266 TIE-RQREYLNIIQSSGKHLLALINDILDLSKIEANQLEVQWECVDVPLLCSNVLALVKE 324 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSN 734 A K + + +I ++AD +KQ+ LN+L NA+ FT G Q++ Sbjct: 325 KAANKDLRLCLEIDPDITTLVADSLRLKQMLLNLLFNALKFTSKGSVGLQVV-----AKG 379 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V V DTG G++ + + +P+ QI + EGTGLGL + + + + G + Sbjct: 380 ISVHFTVWDTGSGISQEDQTQLFEPYFQIAKAVAGGAEGTGLGLAVTRKLAQIHGGSVKV 439 Query: 795 FSTPAKGTLIEIIFPL 810 S G+ ++ PL Sbjct: 440 ESEVDSGSRFTLVLPL 455 >gi|121997175|ref|YP_001001962.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1] gi|121588580|gb|ABM61160.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1] Length = 1266 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 90/264 (34%), Positives = 135/264 (51%), Gaps = 12/264 (4%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DISE K + L AK+ AE + KSDFLA +SHEIRTP+ A+IG +++ P Sbjct: 502 IQDISERKAVEQALHQAKEAAEANNRAKSDFLANMSHEIRTPMNAVIGLGQLLIETDLDP 561 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + YA + + ++L I+ND+LD SKIE+ ++ L P L E + + +L Sbjct: 562 VQR----NYAEKMHNASRMLLGIINDILDYSKIEADRLTLDPHPFDLHELMDQMATLFGD 617 Query: 678 YANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A EK + + IP L D + Q+ N+LSNAI FT GQ+ +S T + Sbjct: 618 QAGEKGLELFLRVEPTIPSSLEGDALRLSQVLSNLLSNAIKFTKH-GQVGLSITQLGQDP 676 Query: 737 VILR----VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 +R V DTG+G+T + + F Q S GTGLGL +++ +V G+ Sbjct: 677 EGVRLHFQVEDTGIGITPEQQRNLFQAFSQADTSTTRNYGGTGLGLVISQRLVAHMGGEL 736 Query: 793 YIFSTPAKGT--LIEIIFPLYDTS 814 + STP +GT E+ P+ T Sbjct: 737 RLESTPGEGTRFAFELHLPIAGTG 760 >gi|320102584|ref|YP_004178175.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] gi|319749866|gb|ADV61626.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] Length = 1293 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 139/256 (54%), Gaps = 20/256 (7%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK AE+ + KS FLA +SHEIRTP+ A++G +E++ + PL P E+ Sbjct: 717 ELRVAKLQAEEANRAKSVFLATMSHEIRTPMNAVVGMTELLLDT---PL-TPEQREFTET 772 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SGN +L ++ND+LD+SKIESG++ L PV L + + LV A+ K + + Sbjct: 773 IRASGNQLLGLINDILDLSKIESGRVELEEGPVRLRLVIERCLELVAARAHAKGLELAAR 832 Query: 690 FANNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL-------- 739 +P ++ DLR ++QI N+LSNA+ +T +G ++ ++ H + L Sbjct: 833 LDGTLPEVIRGDDLR-LRQILTNLLSNAVKYTDTGEVVLTASWHAGDLSAPLDSPKRSPR 891 Query: 740 ---RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V D+G+G+ + + + + F Q+ + R GTGLGL + + +V+ G ++ + Sbjct: 892 LEIAVEDSGIGIPDAQKPRLFQAFQQLDAAGHRRTGGTGLGLAITRKLVEKMGGTIHVEN 951 Query: 797 TPAKGT--LIEIIFPL 810 P G+ + II PL Sbjct: 952 RPGGGSRFVFNIIAPL 967 >gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] gi|300073351|gb|ADJ62750.1| Hpt sensor hybrid histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 723 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/249 (32%), Positives = 138/249 (55%), Gaps = 14/249 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + E + KL AK+ A+ + FL+ +SHEIRTP+ A++G + ++++ R + Sbjct: 63 LRENARTAEKLVQAKEAADHAMLTRGAFLSTMSHEIRTPMNAVLGMAGLLRSTRL----D 118 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQL 677 + E+A I+ S + +L IVND+LD SKI+ GKM++ F+ + EA +EA+S Sbjct: 119 TQQAEFAKAIEDSAHALLGIVNDVLDFSKIDVGKMDIAVVEFDLAKVVEASAEALS---F 175 Query: 678 YANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNE 735 A EKR+ + + + PR++ D ++QI LN+L NA+ FT +G ++ + +++ Sbjct: 176 KAREKRVRLLAHLDSRLPPRLVGDPGRIRQILLNLLGNALKFTHAGEVLLRVQALQVTSD 235 Query: 736 EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +R VRD+G+GM L + PF Q +S + GTGLGL + K +V+ G Sbjct: 236 HCRVRFEVRDSGIGMDEDTLRRLFSPFAQADSSVTRQYGGTGLGLSICKRLVELMGGSIG 295 Query: 794 IFSTPAKGT 802 + S G+ Sbjct: 296 VESALGTGS 304 >gi|291618164|ref|YP_003520906.1| RcsC [Pantoea ananatis LMG 20103] gi|291153194|gb|ADD77778.1| RcsC [Pantoea ananatis LMG 20103] Length = 949 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/258 (32%), Positives = 136/258 (52%), Gaps = 7/258 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ ++ P G Sbjct: 445 DVSARVRMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTRQL-PSG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + N S +L+L I++D+LD SKIES ++ + P S E ++ + Sbjct: 504 IDSLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPRPFSPREVITHIVGNYLSLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +KR+ + +++P+ L D ++Q+ N+L+NAI FT +G II + + + Sbjct: 561 VKKRLTLYCYIEHDVPQALDGDPLRLQQVISNLLNNAIKFTHTG--CIILHAYVTQGYLA 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 R RDTGVG+ EL + PF Q+ N Q +GTGLGL + + +++ G + S P Sbjct: 619 FRTRDTGVGIPAKELTRLFDPFFQVGNGVQRNFQGTGLGLAICEKLINMMDGDIEVESEP 678 Query: 799 AKGTLIEIIFPLYDTSHP 816 G+ + P+Y+ P Sbjct: 679 GMGSQFIVRIPIYNGKQP 696 >gi|218779450|ref|YP_002430768.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218760834|gb|ACL03300.1| histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1056 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 84/256 (32%), Positives = 139/256 (54%), Gaps = 6/256 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I+ ++ + L AK+ AE KS FLA +SHE+RTPL +IIGFS ++ + GPL Sbjct: 794 EIARREELEAHLVTAKEKAESADRLKSAFLATMSHELRTPLNSIIGFSSIVLQELPGPL- 852 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N + + S +L ++ND+LDISKIE+ ++ L E EAV+ + V+ A Sbjct: 853 NKEQKKQMGMVRNSARHLLALINDVLDISKIEADQLVLAPEEFDFTEAVNGVVQSVRPLA 912 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN---- 734 +K + + + RI D R ++Q+ +N+++NAI FT G +++S N Sbjct: 913 EKKGLELELKQDASKLRIFCDKRRMEQVLINLVNNAIKFTEKGSVSVLVSGPSNRNPHGV 972 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + V+++++DTG+G+ + K KPF QI + EGTGLGL + K +V G+ + Sbjct: 973 DMVMIQIQDTGIGIQPGDFSKLFKPFRQIETGLDRKYEGTGLGLSICKKLVGLMGGEITV 1032 Query: 795 FSTPAKGTLIEIIFPL 810 S G+ + P+ Sbjct: 1033 ESEIGHGSRFTVRLPV 1048 >gi|160897314|ref|YP_001562896.1| PAS/PAC sensor signal transduction histidine kinase [Delftia acidovorans SPH-1] gi|160362898|gb|ABX34511.1| PAS/PAC sensor signal transduction histidine kinase [Delftia acidovorans SPH-1] Length = 842 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 84/254 (33%), Positives = 135/254 (53%), Gaps = 12/254 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL- 618 D+SE++ ++ A+ AE+ KS+F+A +SHE+RTPL +I+GF+E G L Sbjct: 583 DVSEFRAAEHATREARDAAEEAFRVKSEFVANMSHELRTPLQSIMGFAE------LGGLR 636 Query: 619 --GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 GNP + N I +G +L +VNDLLD++K+ES +H E L + + ++ Sbjct: 637 SRGNPAMADMFNDIHEAGIRMLALVNDLLDVAKLESAVGTIHVERTDLRSLIRPVVRELE 696 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +K I +R ++ P I AD +Q+ N+L+NAI F+P GG+I + Sbjct: 697 PQQQQKLIDLRLEL-DDTPLIAKADPVRFQQVVRNVLANAIKFSPIGGRIDVQGRIDEQG 755 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++ + V D G G+ EL+K +PF Q ++ G GTGLGL + + ++DA G Sbjct: 756 DICIAVSDQGPGIPPQELDKIFQPFVQSSKTRNGSG-GTGLGLAICRKIIDAMDGTIAAS 814 Query: 796 STPAKGTLIEIIFP 809 + G+L I P Sbjct: 815 NRSEGGSLFRITLP 828 >gi|83777315|gb|ABC46993.1| PAS/PAC domain-containing protein [Arthrospira platensis Ap-s] Length = 607 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/264 (31%), Positives = 148/264 (56%), Gaps = 19/264 (7%) Query: 561 ISEWKQEKNKLSHA----KKIAEKESSH---KSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 +S+ K+++ +L++ KK+ E+ + KS+FLA +SHEIRTP+ A++GF++++++ Sbjct: 284 LSQEKEQRQELTYKNIRLKKMTEEAKAANRAKSEFLANMSHEIRTPMNAVLGFADLLQS- 342 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + +P+ Y I SG +L ++ND+LD+SKIE+GK+ LH+EPV++ ++E Sbjct: 343 ---TITDPQASSYIKAIASSGRTLLALINDILDLSKIEAGKLQLHYEPVNIRTIINEIEH 399 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-- 730 + + A EK I ++ A IP I+ D ++QI NI+ N+I FT G I+++ Sbjct: 400 IFEQKAKEKNIELQVYIAPEIPYSIIMDEVRLRQILFNIVGNSIKFTEFGSVKIMASCSQ 459 Query: 731 ----HTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 H N + + + DTG+G++ + +K F Q + GTGLGL + + +V Sbjct: 460 LKPNHPYNSINLKIAITDTGIGISPEDQQKIFDSFTQSEGQSNRKYGGTGLGLTITERLV 519 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 G ++ S +G+ FP Sbjct: 520 HLLGGSIHLESQINQGSTFTFDFP 543 >gi|270159374|ref|ZP_06188030.1| sensory box histidine kinase/response regulator [Legionella longbeachae D-4968] gi|289165811|ref|YP_003455949.1| sensory histidine-kinase / response regulator [Legionella longbeachae NSW150] gi|269987713|gb|EEZ93968.1| sensory box histidine kinase/response regulator [Legionella longbeachae D-4968] gi|288858984|emb|CBJ12910.1| putative sensory histidine-kinase / response regulator [Legionella longbeachae NSW150] Length = 762 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 108/365 (29%), Positives = 182/365 (49%), Gaps = 29/365 (7%) Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 V Q C+ L+A S G+ FGY V + + F + E+ ++ Sbjct: 121 VYQGCNNLQAQSAGLQ------------------FGYEV--VGKTDFDLPWEKEQAELIR 160 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKN 569 +IL + +E+I KE LS + I+ L M DI+E K+ + Sbjct: 161 KNDRQILETGETEVIEEIIQVKGKEAIFLSHKSPIRNKNGEIIGVLGMSVDITERKKIEA 220 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L+ AK+ AE + K++FL + H+IRTPLT I+GFS++IK + NPR EYA+ Sbjct: 221 ELNIAKEKAETANRAKTEFLENMRHDIRTPLTGIVGFSDIIKEEA----QNPRIKEYADN 276 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + S + +LD ++++L+ + SG++ + L + I L + A K + + Sbjct: 277 LVASSHALLDFMDEVLEAIHVSSGEIPRVKKKFELQNLLQHLIDLNKAKAFSKHLELSLD 336 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEEVILR--VRDTG 745 F NIP+ ++ D + +I L +L+N+++FT SG ++ EVIL+ V DTG Sbjct: 337 FDKNIPKYLIGDNIRIHRIILELLTNSLNFTDSGFVKLTAQLAKQEGREVILKFIVEDTG 396 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ + ++ F ++ S + +G GLGL + K VD G+ Y+ ST +KGT+ Sbjct: 397 IGIPQDKQQEIFLQFKKLTPSYKGIYKGAGLGLAVLKQFVDELDGEIYVKSTVSKGTIFT 456 Query: 806 IIFPL 810 I PL Sbjct: 457 CIIPL 461 >gi|169602473|ref|XP_001794658.1| hypothetical protein SNOG_04238 [Phaeosphaeria nodorum SN15] gi|160706176|gb|EAT87998.2| hypothetical protein SNOG_04238 [Phaeosphaeria nodorum SN15] Length = 968 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 80/267 (29%), Positives = 143/267 (53%), Gaps = 20/267 (7%) Query: 560 DISEWKQEKNKLSHAKKIAEK----------ESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 DI+E ++ +++L +K E+ S KS FLA +SHEIRTP+ +IG SE+ Sbjct: 366 DITELREREDQLREQEKENERLLANAAAAKEASRMKSQFLANMSHEIRTPIAGVIGMSEL 425 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + + E A I RS N +L ++ND+LD SK+ESG++++ SL + Sbjct: 426 LSDMNL----DEEQKECAENIHRSANSLLTVINDILDFSKVESGRLDVEEVQFSLSVVLR 481 Query: 670 EAISLVQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGG-QI 725 + ++ A K ++ +++ + + R++ D ++QI N+L+N+I FT G ++ Sbjct: 482 DVNKMMSFAAQRKGLVYQSTIQDEVEQDLRVMGDPGRLRQILTNVLTNSIKFTSEGSVKL 541 Query: 726 IISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 +S + +N+ V + V DTG+G+ ++ +PF Q +S R GTGLGL ++K Sbjct: 542 SVSISQETNDSVTVNFSVIDTGIGIEEEVRKRLFQPFSQADSSTARRFGGTGLGLTISKN 601 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL 810 +V+ G+ ++ S +GT P Sbjct: 602 LVELMKGQIWLDSKLGQGTTATFWIPF 628 >gi|77464934|ref|YP_354438.1| cytoplasmic sensor hybrid histidine kinase [Rhodobacter sphaeroides 2.4.1] gi|77389352|gb|ABA80537.1| cytoplasmic sensor hybrid histidine kinase [Rhodobacter sphaeroides 2.4.1] Length = 849 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 110/375 (29%), Positives = 182/375 (48%), Gaps = 40/375 (10%) Query: 450 EVMQLCSILEATSDGIAIINR-EGIILSTNR--------AVSKLFGYPVEDILRKPFTVF 500 E M+L + ++A DG + +R E ++L +R A + G P E+ILR Sbjct: 200 EQMRLRAAIDAIPDGFVLFDRAERLVLCNDRYRAIYPRSAEALRPGAPFEEILRHGLAHG 259 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL---LSLRIIIKKLPFSSCYSLT 557 +L + L+ R LG E++L LR+I + P L Sbjct: 260 QFPEAAGREEEWLADRLAA-FRH------LGGAAEQQLDDGRWLRVIEHETPDGGRVGLG 312 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI------K 611 + DI+E K+++ L A+ AE S KS FLA +SHEIRTP+ I+G ++++ + Sbjct: 313 V-DITELKRQQAALESARAAAEAASRAKSAFLANMSHEIRTPMNGIVGMADLLCETVLTE 371 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 +QR ++ I SG +L I+ND+LD SKIE+ ++ LH EP L+ + E Sbjct: 372 DQRL----------FSETIRSSGEALLVIINDILDYSKIEANRLTLHPEPFDLERTIHEV 421 Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIII 727 L+Q A K I + F +P R + D ++Q+ N++ NA+ FT +G +++ Sbjct: 422 AMLLQPKARAKGIDLLIDFDLFLPTRFVGDPGRLRQVLTNLIGNAVKFTAAGHVLIRVVG 481 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 ++ + V DTG+G+ L+ F QI R EGTGLGL + + +++ Sbjct: 482 LEVAPGRHDLRVTVEDTGIGIAPEHLDHVFGEFNQIEAEATRRFEGTGLGLAITRRLIEL 541 Query: 788 NMGKFYIFSTPAKGT 802 G ++ S P +G+ Sbjct: 542 MQGAVWVESEPGRGS 556 >gi|330986722|gb|EGH84825.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. lachrymans str. M301315] Length = 917 Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR +Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQFDYLGT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ + + Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 + P L+ D ++QI N++SNAI FT G + + EE + + V+DTG Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|239904905|ref|YP_002951643.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239794768|dbj|BAH73757.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 823 Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 99/381 (25%), Positives = 186/381 (48%), Gaps = 41/381 (10%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 R++ + + +I++ +DG+ +++ G N A+ +FG D P ++ Sbjct: 246 RELNDSLAHIQAIIDNLADGLLVVDDAGRATLHNPALLAMFGLTGTD----PAGRWVRDA 301 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562 P M LS D ++ L K+++ +LP + L + D++ Sbjct: 302 FPPAMAALAASCLS-DKACPETEVALSGGGTGKVVATSF---RLPGQARTAVILLVRDVT 357 Query: 563 EWKQEKNKLSHAKKIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG----- 616 EKE K++F++ VSHE+RTPLT+++GF+++I+ + Sbjct: 358 ---------------VEKEVDRMKTEFISTVSHELRTPLTSVLGFAKIIRRKFLELVVPA 402 Query: 617 -PLGNPRYIEYANYIDRSGNLVL-------DIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 P G+ R A I + ++++ ++V+D+LDI+K+ESG+ EPVSL Sbjct: 403 LPPGDARVARGAGQIRENLDIIVAEGERLTELVDDVLDIAKMESGRCEWDMEPVSLAAVA 462 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 A+ A K + + A+++P ++AD + Q+ LN++ NA+ FT S G + +S Sbjct: 463 DHAVKAAAPLAARKGLALTADIASDLPAVMADRDRLVQVLLNLIGNAVKFTTS-GWVRLS 521 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + EV + V D+G G+ +LE + F Q ++ + +GTGLGLP+ + +V+ + Sbjct: 522 AVAV-DGEVRVAVADSGAGIAAKDLETIFEKFKQAGDTLTEKPKGTGLGLPICRQIVERH 580 Query: 789 MGKFYIFSTPAKGTLIEIIFP 809 G+ + S P +G++ I P Sbjct: 581 GGRIWAESVPGQGSVFRFILP 601 >gi|281611|pir||B41863 two-component regulatory protein lemA - Pseudomonas syringae Length = 929 Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR +Y Sbjct: 282 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQFDYLGT 337 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ + + Sbjct: 338 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 397 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 + P L+ D ++QI N++SNAI FT G + + EE + + V+DTG Sbjct: 398 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 457 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 458 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 514 >gi|303327881|ref|ZP_07358321.1| sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] gi|302862242|gb|EFL85176.1| sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] Length = 976 Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 91/258 (35%), Positives = 128/258 (49%), Gaps = 11/258 (4%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 EKN L+ AK+ AE+ S KSDFLAR+SHEIRTP+ AI+G + + + + Y Sbjct: 306 EKNALA-AKEQAEEASRAKSDFLARMSHEIRTPMNAILGITYLCLQTTH----ENKQLYY 360 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I +G +L I+ND+LD+SKIE+GKM L E +L E V L K I + Sbjct: 361 LRKILSAGRGLLGIINDILDVSKIEAGKMTLQNEAFALQELVENLSDLCGALVGGKNIEV 420 Query: 687 RTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVR 742 N+ + DL + Q+ N+L NA+ FT G ++ + I + V Sbjct: 421 LFHVDPNVFVTVEGDLLRLTQVLTNLLGNAVKFTEKGRVVLRIEELGRGADTITLGISVS 480 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+T EL + KPF Q S R GTGLGL + + V G+ + S P KG+ Sbjct: 481 DTGIGLTEEELARLFKPFEQADGSITRRYGGTGLGLVICQRFVRMMGGELEVRSEPGKGS 540 Query: 803 L--IEIIFPLYDTSHPHD 818 + P H D Sbjct: 541 AFSFSLTLPYRPVRHAWD 558 >gi|254457972|ref|ZP_05071399.1| PAS/PAC sensor hybrid histidine kinase [Campylobacterales bacterium GD 1] gi|207085365|gb|EDZ62650.1| PAS/PAC sensor hybrid histidine kinase [Campylobacterales bacterium GD 1] Length = 1040 Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 84/255 (32%), Positives = 140/255 (54%), Gaps = 10/255 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 KL AK IA + KSDFL+ +SHEIRTP+ AI+GF+E++ ++R + +I+ Sbjct: 550 KLEEAKDIAVNANKAKSDFLSNMSHEIRTPMNAILGFAELL-DKRVEDKKSKSFIK---T 605 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG +L ++ND+L++SKIESGK+ L V++ E I++ +L A +K + ++ Sbjct: 606 IRSSGQTLLYLINDILNLSKIESGKLELVKSRVNIQNICEETINIFKLQAKQKGLQLQLD 665 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-GQIIIST----THTSNEEVILRVRD 743 +P+ IL D + +I +N++ NAI FT G +++++ HTS ++ +RV D Sbjct: 666 INKEMPKAILIDSIRLSEILINLIGNAIKFTEEGYVKLVVNVDEVYEHTSKVDLTIRVED 725 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G+G+ +K F Q N + GTGLGL +++ + G + S KG+ Sbjct: 726 SGIGIEKINQDKIFNIFEQTENQDVKKYGGTGLGLAISRKLSKLMGGSLEVESVLGKGSS 785 Query: 804 IEIIFPLYDTSHPHD 818 I F D + D Sbjct: 786 FIIEFKSIDIASVSD 800 >gi|239907626|ref|YP_002954367.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797492|dbj|BAH76481.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 988 Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 117/381 (30%), Positives = 182/381 (47%), Gaps = 38/381 (9%) Query: 454 LCSILEATSDGIAI---INREGIILSTNRAVSKLFGYPVEDILRK----PFTVFLEQNTP 506 L SI++ T GI I RE ++ N+A + G ++ K F + E N Sbjct: 470 LRSIIQETPIGIHIYELFERELVLTGANQAADLILGINHSQLIGKKLNDAFPMLEETN-- 527 Query: 507 SVMNHYLTEILSLDLRQT----LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562 + + YL + + T E + + T E +L RI FS+ ++ DIS Sbjct: 528 -ISDQYLEVLKTGKTWHTEQIGYEDVNISGTYE--ILCFRI------FSNQIAVMFMDIS 578 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 KQE+ +L +AK+ AE + KS+FLA +SHEIRTPL I+G +++++ Sbjct: 579 SRKQEEFELENAKRAAESSNKAKSEFLANMSHEIRTPLNGIMGMLQLLESTDTDH----- 633 Query: 623 YIEYANYID---RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 E + YID S + +++D+LD+S+IE G + L ++ E I+ Sbjct: 634 --EQSEYIDIALSSCRNLTRLISDILDLSRIEHGNITLENHGFNISHLTEEVINTFITEL 691 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + K I + TS NIP I+ D ++QI NI N+I FT S G+I I+ + I Sbjct: 692 SSKEIELSTSIEKNIPEIVYGDSGRLRQIIFNIFGNSIKFT-SSGRIFINIDSLIQRQTI 750 Query: 739 ---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V DTG+G+ +L++ PF Q S + G GLGL + K ++ A G + Sbjct: 751 YLFIEVSDTGIGIPEDKLDEIFVPFTQADGSLTRKYGGVGLGLSIVKKLLIAMGGTITVE 810 Query: 796 STPAKGTLIEIIFPLYDTSHP 816 S KGT I P + TS P Sbjct: 811 SNIDKGTTTCIAIP-FQTSEP 830 >gi|303326050|ref|ZP_07356493.1| sensory box sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] gi|302863966|gb|EFL86897.1| sensory box sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] Length = 1411 Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/252 (32%), Positives = 139/252 (55%), Gaps = 8/252 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q + +L +A +A + S K+DFL+ +SH+IRTP+ AI+G +E+ +R P+ + Sbjct: 1010 QQTREQLKNALTLAREASQAKTDFLSSMSHDIRTPMNAIVGMTELALARRDNPV---QID 1066 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E + I + +L ++ND+LD+S+IESG + L E S E V + ++ A +K Sbjct: 1067 ESLSVIRTASEHLLRLINDILDMSRIESGHIVLVKELFSQREEVEKIVTRALALAGKKGQ 1126 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEV---IL 739 SF + + D+ + QI N++SNA+ FTP GG++ ++ T NE++ Sbjct: 1127 TFSHSFQVRHDKCIGDVLRIHQILENLISNAVKFTPEGGRVSLAVTELPQKNEQIGWYRF 1186 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G++ ++ + F ++ N + EGTGLGL + K +VD G + S P Sbjct: 1187 VVADTGIGISPEDIPHIFEVFFRVENLRVGHTEGTGLGLSIIKNIVDYKGGTIKVESEPG 1246 Query: 800 KGTLIEIIFPLY 811 +GT + PL+ Sbjct: 1247 QGTRFTVDLPLH 1258 >gi|284041387|ref|YP_003391317.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283820680|gb|ADB42518.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 863 Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/255 (33%), Positives = 134/255 (52%), Gaps = 9/255 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS+ Q + +L A+ +AEK + K DFLA +SHEIRTPL A++GFSE+++ Sbjct: 334 DISDRVQSQQRLQEARIMAEKAAKLKEDFLANMSHEIRTPLNAMLGFSELLETTNL---- 389 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + E+ I +G +L IVND+LDISKIE+G + L P S+ + ++ Q A Sbjct: 390 DADQQEFLRLIRTAGKNLLTIVNDILDISKIEAGMIQLESIPFSIQMLTASIKAMCQGAA 449 Query: 680 NEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIII--STTHTSNEE 736 +K + + N+P + + D + QI LN+++NAI FT G ++ ++ Sbjct: 450 TDKGLQLIVEVDPNLPTVFMGDPTRLTQILLNLINNAIKFTKQGSVTLLIEQGERKTSAS 509 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + +R V+DTG+GM L + F Q GTGLGL + K++ + G + Sbjct: 510 IPVRFIVQDTGIGMAREALPTIFERFQQADKFTTRYYGGTGLGLNIVKSLTELQKGSVSV 569 Query: 795 FSTPAKGTLIEIIFP 809 ST KG+ + P Sbjct: 570 ESTLGKGSRFTVEIP 584 >gi|221640855|ref|YP_002527117.1| sensor protein [Rhodobacter sphaeroides KD131] gi|221161636|gb|ACM02616.1| Sensor protein [Rhodobacter sphaeroides KD131] Length = 849 Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 110/375 (29%), Positives = 182/375 (48%), Gaps = 40/375 (10%) Query: 450 EVMQLCSILEATSDGIAIINR-EGIILSTNR--------AVSKLFGYPVEDILRKPFTVF 500 E M+L + ++A DG + +R E ++L +R A + G P E+ILR Sbjct: 200 EQMRLRAAIDAIPDGFVLFDRAERLVLCNDRYRAIYPRSAEALRPGAPFEEILRHGLAHG 259 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL---LSLRIIIKKLPFSSCYSLT 557 +L + L+ R LG E++L LR+I + P L Sbjct: 260 QFPEAAGREEEWLADRLAA-FRH------LGGAAEQQLDDGRWLRVIEHETPDGGRVGLG 312 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI------K 611 + DI+E K+++ L A+ AE S KS FLA +SHEIRTP+ I+G ++++ + Sbjct: 313 V-DITELKRQQAALESARAAAEAASRAKSAFLANMSHEIRTPMNGIVGMADLLCETVLTE 371 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 +QR ++ I SG +L I+ND+LD SKIE+ ++ LH EP L+ + E Sbjct: 372 DQRL----------FSETIRSSGEALLVIINDILDYSKIEANRLTLHPEPFDLERTIHEV 421 Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIII 727 L+Q A K I + F +P R + D ++Q+ N++ NA+ FT +G +++ Sbjct: 422 AMLLQPKARAKGIDLLIDFDLFLPTRFVGDPGRLRQVLTNLIGNAVKFTAAGHVLIRVVG 481 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 ++ + V DTG+G+ L+ F QI R EGTGLGL + + +++ Sbjct: 482 LEVAPGRHDLRVTVEDTGIGIAPEHLDHVFGEFNQIEAEATRRFEGTGLGLAITRRLIEL 541 Query: 788 NMGKFYIFSTPAKGT 802 G ++ S P +G+ Sbjct: 542 MQGAVWVESEPGRGS 556 >gi|71734710|ref|YP_275861.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555263|gb|AAZ34474.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. phaseolicola 1448A] Length = 917 Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR +Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQFDYLGT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ + + Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 + P L+ D ++QI N++SNAI FT G + + EE + + V+DTG Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|330901754|gb|EGH33173.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. japonica str. M301072PT] Length = 343 Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR +Y Sbjct: 14 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQFDYLGT 69 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ + + Sbjct: 70 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 129 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 + P L+ D ++QI N++SNAI FT G + + EE + + V+DTG Sbjct: 130 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 189 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 190 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 246 >gi|266622772|ref|ZP_06115707.1| putative response regulator receiver domain protein [Clostridium hathewayi DSM 13479] gi|288865477|gb|EFC97775.1| putative response regulator receiver domain protein [Clostridium hathewayi DSM 13479] Length = 1116 Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 98/310 (31%), Positives = 155/310 (50%), Gaps = 29/310 (9%) Query: 527 KITLGSTKEEKLLSLRIIIK--------------KLPFSS--CYSLTMHDISEWKQE--- 567 K TLGS+++E L RI++ + P+S L I E K E Sbjct: 522 KKTLGSSRQEVFLEARILLTDGQYHWTSTQIIYVENPYSGDQLAILLSRRIDEQKHEEEQ 581 Query: 568 -KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + L A + A+ S KS FL+ +SH+IRTP+ AI+G + + + R E Sbjct: 582 HRQALQSALESAKAASVAKSRFLSNMSHDIRTPMNAIMGMTAIAASHMDD---QERVREC 638 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I+ S + +L ++ND+LD+SKIESGK++L EP + E V+E L++ A+ + + Sbjct: 639 LRKINLSSSHLLSLINDILDMSKIESGKISLRDEPFNFAELVAEVAELIRPQADAGHLDM 698 Query: 687 RTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIII-----STTHTSNEEVILR 740 S + ++A D V+QI N+LSNA+ +TP GG I + + + I Sbjct: 699 NLSLMDLKDELVAGDPLRVRQICFNVLSNAVKYTPEGGHISVRLYQRDSGRREYQNFIFE 758 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 DTG+GM+ L+K PF ++ +S R GTGLG+ + K +VD G + S + Sbjct: 759 CSDTGLGMSPEFLDKLFLPFERVQDSTHSRVTGTGLGMAITKNIVDMMGGDIQVESELGE 818 Query: 801 GTLIEIIFPL 810 G+ + PL Sbjct: 819 GSAFTVTLPL 828 >gi|259415385|ref|ZP_05739306.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] gi|259348615|gb|EEW60377.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] Length = 756 Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 107/405 (26%), Positives = 194/405 (47%), Gaps = 48/405 (11%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-R 494 ED R+ +K E +L I E +DG+ +I R+GI+ N S+L GY ++++ R Sbjct: 229 EDAYMRLFDQKQEAR--RLAMIAEHANDGVMLIGRDGIVRWVNDGFSRLTGYSFDELVGR 286 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL-GSTKEEKLLSLR-------IIIK 546 P + NT D +T+E+ + G +L++ R I Sbjct: 287 NPGDILNSDNTDP------------DTLRTIEEGRIKGKPFRAELINRRKDGEDIWIETN 334 Query: 547 KLPF------SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 ++P Y D++ K+ + +L A+ AE+ + K +FLA +SHE RTP+ Sbjct: 335 QVPVFDDTGRIETYIAVERDVTATKEYERQLKEARLAAEEGARIKEEFLATMSHEFRTPM 394 Query: 601 TAIIGFSEVIK------NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 +IG +++++ +QR YA+ I S +L ++ND+LD+S++ + Sbjct: 395 NGVIGMTQMLQATDLSEDQRL----------YADTILSSSRALLSLINDVLDLSRMNAAG 444 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILS 713 ++L L V + L+ A EK++ + ++P + D R ++QI +N++ Sbjct: 445 VSLFNVDFDLHACVRDTARLLSSQAEEKQLALGVEIDPDVPVWVTGDDRRLRQILVNLVG 504 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 NA+ FT SG I + S +E+ L V DTG+G+ +L+ + F Q N+ + Sbjct: 505 NAVKFTTSGSVTIRLSAALSGDEIALSIAVEDTGIGIPADKLDCIFERFSQADNAISRKY 564 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 G+GLGL +++ + A G ++ STP +G+ + L + P Sbjct: 565 GGSGLGLSISRGLAQAMGGDIHVTSTPGEGSCFTLTLDLGVGTCP 609 >gi|284035080|ref|YP_003385010.1| Hpt sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283814373|gb|ADB36211.1| Hpt sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 778 Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 84/248 (33%), Positives = 140/248 (56%), Gaps = 10/248 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I K +N+L AK++AE+ + KSDFL+ +SHEIRTPL +IGF++++ + + Sbjct: 115 IERRKMIENELRQAKELAEQATLAKSDFLSTMSHEIRTPLNGVIGFTDLLLKTKTDETQH 174 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 Y + +++S +LDI+ND+LD SKIE+GK+ L E L + +++L A+ Sbjct: 175 ----HYLSLVNQSATSLLDIINDILDFSKIEAGKLELVIEQTDLLAIGRQVADMIKLPAH 230 Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI 738 +K++ + + +I R + AD ++QI +N+LSNA+ FT G ++ I H + + Sbjct: 231 QKKLEMLLNIDPSIARFVWADQIRLRQILINLLSNAVKFTQQGEIELRIERIHDQPADGL 290 Query: 739 --LR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 LR VRDTG+G+ EK + F Q +S R GTGLGL ++ ++ + + Sbjct: 291 TSLRFAVRDTGIGIAERNQEKIFEAFSQEDSSTTRRFGGTGLGLAISNKLLGLMGSRLQL 350 Query: 795 FSTPAKGT 802 S KG+ Sbjct: 351 TSELGKGS 358 >gi|312879124|ref|ZP_07738924.1| multi-sensor signal transduction histidine kinase [Aminomonas paucivorans DSM 12260] gi|310782415|gb|EFQ22813.1| multi-sensor signal transduction histidine kinase [Aminomonas paucivorans DSM 12260] Length = 877 Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 129/250 (51%), Gaps = 3/250 (1%) Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 WK+ +LS A + + K +FLA +SHE+RTPL A++ +E + + G L N Sbjct: 504 WKR-TEELSAASADLTRTARMKDEFLAHMSHELRTPLGAMLNLAEALAEESLGTL-NEAQ 561 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 I+ G L ++ D+LD+SK+E+G+++L P+ + A++ + +K Sbjct: 562 RRILQSIEECGRHFLSLIGDILDLSKVEAGRLDLVRSPLDVASLARGALTALSRDFEKKG 621 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVILRVR 742 I + ++PR D + V+QI +N+LSNA+ FTP GG++ + V + V Sbjct: 622 IAVSLEAPEDLPRADGDPKRVRQILVNLLSNAVKFTPQGGRVGVEVLRDPLRPAVAVTVW 681 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D G+G++ +L++ PF Q GTGLGL L MV+ + G + S P +G+ Sbjct: 682 DRGIGISPEDLDRLFVPFVQGEGGLSRSFSGTGLGLSLVLRMVELHGGGLQVESAPGEGS 741 Query: 803 LIEIIFPLYD 812 + PL + Sbjct: 742 RFTVRLPLAE 751 >gi|83644635|ref|YP_433070.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83632678|gb|ABC28645.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 957 Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 138/245 (56%), Gaps = 8/245 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL IIGF+ ++ G P+ + N Sbjct: 278 ELDMARKEAIEASRVKSEFLANMSHEIRTPLNGIIGFTHLLLKSNLG----PQQRDQLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I +S ++L I+ND+LD SKIE+GK+ L V+L E V + ++++ A+EK + + Sbjct: 334 ILKSSEILLTIINDILDFSKIEAGKLVLDNTTVNLQEIVEDVLTMLAPGAHEKNLDLAGL 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTG 745 +++P I+ D +KQI N+++N I FT SG ++ + S+E +++ V D+G Sbjct: 394 VYSDVPSHIMGDPLRIKQIVTNLVNNGIKFTQSGEVVVRVMLEDESDESSLIKITVTDSG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 VG++ + + F Q S R GTGLGL +++ + + G+ + S KG+ Sbjct: 454 VGLSRVQQQTLFSAFSQADASTARRFGGTGLGLVISRRLTEQMGGQIGVESELGKGSTFW 513 Query: 806 IIFPL 810 I P+ Sbjct: 514 IELPV 518 >gi|209695063|ref|YP_002262992.1| response regulator, histidine kinase [Aliivibrio salmonicida LFI1238] gi|208009015|emb|CAQ79245.1| response regulator, histidine kinase [Aliivibrio salmonicida LFI1238] Length = 697 Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/261 (31%), Positives = 140/261 (53%), Gaps = 6/261 (2%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y T DIS K+ ++ AK+ AE + KS FLA +SHEIRTPL AI+G +V Sbjct: 301 YRGTAKDISIRKKRLQQIQKAKQEAETANKAKSQFLAMMSHEIRTPLNAILGMVDVFNE- 359 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 L +Y E+ + ++ S L+L I++D+LDIS+IE+G L +P+ L E + + + Sbjct: 360 --SLLSKEQY-EWLDQMEVSAQLLLAIISDVLDISRIEAGTFVLDEQPIDLLETIINSTN 416 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + + +K I + + ++++P ++AD + QI N++ NA+ FT G I I+ T T Sbjct: 417 YFKEKSKDKGINLTVTVSHSVPNYVIADAARIMQIIFNLVGNAVKFTKKGS-IWINITQT 475 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + + DTG+G++ L +PF Q +S + G+GLGL + K + + G Sbjct: 476 ECNSTKIAITDTGIGISKDVLNNLFQPFVQADSSITRQFGGSGLGLSIIKRLTELMNGVI 535 Query: 793 YIFSTPAKGTLIEIIFPLYDT 813 + S +G+ + P +T Sbjct: 536 SVKSVINEGSTFTVTLPFKET 556 >gi|113474406|ref|YP_720467.1| periplasmic sensor signal transduction histidine kinase [Trichodesmium erythraeum IMS101] gi|110165454|gb|ABG49994.1| periplasmic sensor signal transduction histidine kinase [Trichodesmium erythraeum IMS101] Length = 569 Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 86/267 (32%), Positives = 137/267 (51%), Gaps = 20/267 (7%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 IS+ + +L AK AE + KS FLA +SHE+RTPL AIIG+S+++ G Sbjct: 300 ISKVAEYTEQLQEAKLKAEAANRSKSAFLATMSHELRTPLNAIIGYSDILYEDVLEG-GY 358 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 +I I +G +L++++D+LDISKIE+G++ L+ E + +++ V + S + Sbjct: 359 KDFIPDIERIKLAGKNLLEMISDILDISKIEAGQVTLYLESIEVNKLVKDVFSTAKNITE 418 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-------- 732 + R N+ + AD+ VKQ+ +N+LSNA FT G I +S Sbjct: 419 KNRNKFELVLGENLGSMYADMPKVKQVLINLLSNAAKFTED-GTITLSVEKVKNNQQKNN 477 Query: 733 --------SNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 SNE ++ RV DTG+G+T +L+ +PF Q S + GTGLGL + K Sbjct: 478 QNHNAKSLSNENYHIVFRVIDTGIGITEEQLKHIFQPFTQADTSTTRKYGGTGLGLAICK 537 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + + + S KG+ + FP Sbjct: 538 RLCERMGAEITVKSQLGKGSTFTVWFP 564 >gi|281355007|ref|ZP_06241501.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] gi|281317887|gb|EFB01907.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] Length = 1560 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 88/273 (32%), Positives = 146/273 (53%), Gaps = 17/273 (6%) Query: 554 YSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 Y LT DI+E ++K +L A + A+ KS FLA VSHE+RTPL A+IGFSE+++ Sbjct: 1156 YVLTSDIDITELSRQKQELQKAMEQAQAADRAKSYFLATVSHELRTPLNAVIGFSELLQG 1215 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 G + +EY I +GN +L+++ D+LD+SK+E+ ++NL + V E + Sbjct: 1216 ---GDVAAAEQLEYLRSISFAGNALLNLIYDVLDLSKLEADQLNLVLADTDAGQLVQEVV 1272 Query: 673 SLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 ++ +L A EK + + N P L +LR ++Q+ LN++ NA+ FT +G + + Sbjct: 1273 AVFRLKAMEKDLKLTVECVNLEQPLRLDNLR-LRQVVLNLVGNAVKFTSAGSVSVRAVFQ 1331 Query: 732 ----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG----EGTGLGLPLAKA 783 +I+RV DTG G++ +K PF Q + RG EG+GLGL +++ Sbjct: 1332 PDPGGETGMLIIRVADTGPGISPESRKKIFDPFVQ---GESTRGTHSYEGSGLGLAISQR 1388 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 +V+ G+ + S G++ + S P Sbjct: 1389 LVNRMGGEIRLESELGSGSVFTVRINQVQRSQP 1421 >gi|239627311|ref|ZP_04670342.1| two-component system protein sensor histidine kinase [Clostridiales bacterium 1_7_47_FAA] gi|239517457|gb|EEQ57323.1| two-component system protein sensor histidine kinase [Clostridiales bacterium 1_7_47FAA] Length = 810 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 90/283 (31%), Positives = 144/283 (50%), Gaps = 25/283 (8%) Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRT 598 +K P + + D++E ++ + KL+ A +AE + KSDFL+R+SHEIRT Sbjct: 249 EKSPVYLAIFIDITDVTELREMQKKLTEQTAALKDALTVAEHANRAKSDFLSRMSHEIRT 308 Query: 599 PLTAIIGFSEV----IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 P+ AIIG + + I +++ R + I S ++ ++ND+LD+SKI GK Sbjct: 309 PMNAIIGMTTIAAAYIDDKQ-------RVADCLEKIGYSSKHLMTLINDVLDMSKISEGK 361 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILS 713 M + EP L+ V S++ A EK + ++ D + Q+ LN+LS Sbjct: 362 MRIAHEPFKLETVVESISSIIYPQAREKGLDFTVPLVELTETELIGDSLRLNQVLLNLLS 421 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVR----DTGVGMTNYELEKAMKPFGQIPNSQQI 769 NA+ FTP GG I + ++ +R+R DTG+GM++ +E+ PF Q S Sbjct: 422 NALKFTPKGGSIRMEIRQMLKKDGKIRLRFTVSDTGIGMSSAFMERLFVPFEQEDMSAGQ 481 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT--LIEIIFPL 810 GTGLG+P+ K +V G + S KGT ++E+ F L Sbjct: 482 NAGGTGLGMPITKNLVTLMGGTITLQSELGKGTSFIVELDFDL 524 >gi|289628366|ref|ZP_06461320.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 841 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR +Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQFDYLGT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ + + Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 + P L+ D ++QI N++SNAI FT G + + EE + + V+DTG Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|42522179|ref|NP_967559.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39574710|emb|CAE78552.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 666 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 129/229 (56%), Gaps = 7/229 (3%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 ++ AE+ S KS FLA +SHEIRTPL AIIGFS+++K L ++Y N I R+G Sbjct: 288 RQQAEQASQLKSLFLANMSHEIRTPLAAIIGFSDLLKESN---LDESERLQYVNIIHRTG 344 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 + I+ND+LD+SK+E+G + + PV+L+ + + L+ +K + + + + Sbjct: 345 EHLTRIINDILDLSKVEAGHLEMQSHPVNLNSLLEDLHILMVARVGDKPVHVEFNRRGIV 404 Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 P ++ D ++QI NI+ NAI FT G + T S ++ V+DTGVG+++ + Sbjct: 405 PDMIRTDPLRLRQILTNIIGNAIKFTDQG--YVRMTYEISGSNLLFTVKDTGVGISSAQR 462 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF-STPAKG 801 + F QI NS + EGTGLGL L++ + G ++ S P KG Sbjct: 463 SNLFQAFSQIDNSVSRKYEGTGLGLVLSRRLAQMMGGDVHLEDSEPGKG 511 >gi|268317404|ref|YP_003291123.1| histidine kinase [Rhodothermus marinus DSM 4252] gi|262334938|gb|ACY48735.1| histidine kinase [Rhodothermus marinus DSM 4252] Length = 1074 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 133/242 (54%), Gaps = 6/242 (2%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 ++++ ++ + ++ K L+ +HE+RTPL+AI+GF+ VIK + NP + E+ Sbjct: 819 RSRIKLLTRLLREANAAKETILSTTTHELRTPLSAILGFASVIKEE----TDNPLHKEFL 874 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 +I+ SG+ +L +ND+LD++++ SG M + PV + E V + L++ A +K + R Sbjct: 875 EHIEESGHRLLATINDILDLARLRSGSMVVRRVPVEVTETVQKVYKLLEPLARKKGLDFR 934 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 R+ D +V+++ N++ NAI FTP G+++IS T + V + VRDTGVG Sbjct: 935 MELPPEPLRVFGDPSAVERVLTNLVGNAIKFTPE-GEVVISVT-ADEKHVRIAVRDTGVG 992 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 ++ L F Q + EG+GLGL +A +V G+ + + KG+ ++ Sbjct: 993 ISEEFLPHIFDEFRQESSGADREFEGSGLGLAIASRLVKLMEGEIEVVTEKGKGSTFTVV 1052 Query: 808 FP 809 P Sbjct: 1053 LP 1054 >gi|302878536|ref|YP_003847100.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302581325|gb|ADL55336.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 872 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 112/381 (29%), Positives = 193/381 (50%), Gaps = 39/381 (10%) Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP---SVMNHYLTEILSLD 520 G+A I G + N+ K+ GY E+IL + FT F P +V + Y+ ++L+ D Sbjct: 271 GLAQIAISGQFIQINQEFCKIIGYTQEEILSQNFT-FERITHPDDIAVDHEYIRQLLAGD 329 Query: 521 LRQT--LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSH--- 573 RQ+ LEK + ++L + +++ L + D+SE KQ +N+L Sbjct: 330 -RQSYMLEKRYIRRDGGLVWVNLSVYLQRDSRGDPLYLISAVLDLSERKQAENELKRYKD 388 Query: 574 ---------------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 A+ AE + KS FL+ +SHE+RTPL AI+GFS ++ R L Sbjct: 389 HLEEEVQQRTADLVLARDAAEAANRAKSVFLSSMSHELRTPLNAILGFSALMS--RDTML 446 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + E N I+RSG +L ++ND+L+++KIE+G++ + E L V + ++ + Sbjct: 447 SHIQR-ENLNIINRSGEHLLSLINDVLEMAKIEAGRVQVLHEAFDLGALVRDVSDMMAVR 505 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--- 734 A EK + + +++ PR I+ D ++Q+ +N++ NA+ FT GG I + N Sbjct: 506 AQEKGLQLLVDQSSDFPRYIMGDEARLRQVLINLVGNAVKFTQHGG-ITMRFGIKPNLLP 564 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPN-SQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E +++ V D+G+G+ + ++ F QI + S Q +GTGLGL + + V G Sbjct: 565 ERLLIEVEDSGIGIKPEDQQRIFDAFVQIGDLSAQ---KGTGLGLTITRQFVQLMGGVIT 621 Query: 794 IFSTPAKGTLIEIIFPLYDTS 814 + STP G + + P+ S Sbjct: 622 LESTPGVGAVFSVELPIEKVS 642 >gi|217976854|ref|YP_002361001.1| multi-sensor signal transduction histidine kinase [Methylocella silvestris BL2] gi|217502230|gb|ACK49639.1| multi-sensor signal transduction histidine kinase [Methylocella silvestris BL2] Length = 859 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 128/225 (56%), Gaps = 4/225 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 ++DF+ VS+E+R+PLT IIGF +++ + GPL NPR +EYA Y+ +S + +L I+ND+ Sbjct: 620 RNDFVHHVSYELRSPLTNIIGFIQLLGDPSVGPL-NPRQLEYAGYVTKSSSALLAIINDI 678 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD++ I++ M L E + + E + A ++ E + + ++ +AD + + Sbjct: 679 LDLASIDADAMELSLEEIDVAETMRAAAEGLEDRVAEAGLTLSVIPMQDLGFFIADGKRI 738 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +QI +N+LSNAI F+ G I ++ EE++ +V D G G+ ++ F Sbjct: 739 RQILMNLLSNAIGFSAPGSAIGLAALR-RGEEIVFKVSDQGRGIPREVVDHIFDRFKT-- 795 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ R G GLGL +A++ V+ + G+ I S +GT + IFP Sbjct: 796 HTSGSRHRGVGLGLSIARSFVELHGGRILIDSALGEGTTVTCIFP 840 >gi|83855337|ref|ZP_00948867.1| sensor histidine kinase/response regulator [Sulfitobacter sp. NAS-14.1] gi|83843180|gb|EAP82347.1| sensor histidine kinase/response regulator [Sulfitobacter sp. NAS-14.1] Length = 713 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/263 (30%), Positives = 137/263 (52%), Gaps = 21/263 (7%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI------KN 612 DI+E + + KL A+ AE +S KS FLA++SHEIRTP+ I+G +EV+ ++ Sbjct: 190 RDITETVEYQRKLVDARATAEAANSAKSLFLAKMSHEIRTPMNGIVGMTEVLGDTALTQD 249 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 QR Y + I S +L I+ND+LD S+IE+ ++++H P L+ E + Sbjct: 250 QRL----------YVDTIKTSAEALLVIINDVLDFSRIEANRLSIHPAPFDLERVFQEVL 299 Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST-- 729 L+Q A +K + + + +PR ++ D ++Q+ N++ NA+ FT +G +I +T Sbjct: 300 LLLQPLAVQKGLDLALDYDLFLPRKLVGDAGRIRQVLTNLVGNAVKFTQNGHILIRATGL 359 Query: 730 --THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 N + + + DTG+G+ +E M F Q + EGTGLGL + + +V Sbjct: 360 PDAGAGNVLIKISIEDTGIGIAPDMIEHIMGEFTQASSDPSPNAEGTGLGLAICQRLVQL 419 Query: 788 NMGKFYIFSTPAKGTLIEIIFPL 810 G+ ++ S G+ PL Sbjct: 420 MGGEIWVTSEHGVGSCFGFELPL 442 >gi|320323404|gb|EFW79492.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. glycinea str. B076] Length = 917 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR +Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQFDYLGT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ + + Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 + P L+ D ++QI N++SNAI FT G + + EE + + V+DTG Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|149175132|ref|ZP_01853755.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] gi|148846110|gb|EDL60450.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] Length = 568 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 111/379 (29%), Positives = 187/379 (49%), Gaps = 36/379 (9%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 IL+ D + + EG IL + ++ +G+ E+I K L + + H ++E Sbjct: 17 ILKFCVDVVITMTEEGRILMASPSIESAWGWNTEEISGKNIYELLTEASRKPCLHCISEC 76 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI--------------- 561 + E + K++ +I+ +L SC I Sbjct: 77 VVSGNSAVCELVV--KRKDQSCSLFELILHQLE-DSCEGSQFIGIFRDKSERFRLQDQQT 133 Query: 562 ----------SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 E K+++ +L A + E+ + K++FL+ +SHEIRTP+TAIIG+SEV+K Sbjct: 134 EYLERLKLTRRELKRKEFELKSALNMVEQANQVKNEFLSNMSHEIRTPMTAIIGYSEVLK 193 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + + I R+G+ +L ++ND+LDISKIE G+ L E + V E Sbjct: 194 E----SVIQAEQHDLIETIQRNGDHLLQVINDILDISKIELGQCELKTEACFPLQIVQEV 249 Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-GQIIIST 729 I+L + A +K + + T+ +IP I +D +KQ+ N++SNA+ FT +G +I I T Sbjct: 250 IALHRPKAVQKGLRLLTNIHESIPETIQSDPIRLKQVLNNLVSNAVKFTNNGFVRIEIRT 309 Query: 730 THTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + SN E +L+ V DTG+G++ L++ PF Q +S GTGLGL L++ +V Sbjct: 310 FNRSNFERLLQFNVADTGIGISKDNLKRIFDPFTQADSSMSRPYSGTGLGLTLSQKLVQL 369 Query: 788 NMGKFYIFSTPAKGTLIEI 806 GK + ST +G++ + Sbjct: 370 LGGKLSVQSTVNQGSIFSV 388 >gi|126658583|ref|ZP_01729730.1| Signal transduction histidine kinase [Cyanothece sp. CCY0110] gi|126620170|gb|EAZ90892.1| Signal transduction histidine kinase [Cyanothece sp. CCY0110] Length = 1195 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/263 (31%), Positives = 142/263 (53%), Gaps = 14/263 (5%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI+E K+ + L AK+ AE ++ KS+FLA +SHEIRTP+ AI+GF +++ + Sbjct: 687 TITDITERKKYQEALEKAKETAEIANNAKSEFLANMSHEIRTPMNAILGFCDLLDKK--- 743 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + R Y I +G ++L ++ND+LD+SKIE+GK+ + ++ + L E + E + Sbjct: 744 -VNDERSRRYLESITSAGKMLLSLINDILDLSKIEAGKIKIIYKSIQLKEVIFEIKQMFA 802 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-------GQIIIS 728 A +K++ + +N+P I+ D +KQI N++ NA+ FT G + S Sbjct: 803 ETAKQKQLELLIDIDDNVPDVIIFDEVRLKQILFNLVGNALKFTEEGYIKITLKSTLFKS 862 Query: 729 TTHT--SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 H S+ + + + DTG+G+ + E+ F Q + GTGLGL + K + + Sbjct: 863 DNHQKFSHCSLKISIEDTGIGIAEDQQERIFDVFTQSEGQSSRKYGGTGLGLTITKRLTE 922 Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809 G + S KG++ + FP Sbjct: 923 ILEGTIDLDSQLGKGSIFILSFP 945 >gi|332559833|ref|ZP_08414155.1| histidine kinase [Rhodobacter sphaeroides WS8N] gi|332277545|gb|EGJ22860.1| histidine kinase [Rhodobacter sphaeroides WS8N] Length = 849 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 110/375 (29%), Positives = 182/375 (48%), Gaps = 40/375 (10%) Query: 450 EVMQLCSILEATSDGIAIINR-EGIILSTNR--------AVSKLFGYPVEDILRKPFTVF 500 E M+L + ++A DG + +R E ++L +R A + G P E+ILR Sbjct: 200 EQMRLRAAIDAIPDGFVLFDRAERLVLCNDRYRAIYPRSAEALRPGAPFEEILRHGLAHG 259 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL---LSLRIIIKKLPFSSCYSLT 557 +L + L+ R LG E++L LR+I + P L Sbjct: 260 QFPEAAGREEEWLADRLAA-FRH------LGGAAEQQLDDGRWLRVIEHETPDGGRVGLG 312 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI------K 611 + DI+E K+++ L A+ AE S KS FLA +SHEIRTP+ I+G ++++ + Sbjct: 313 V-DITELKRQQAALESARAAAEAASRAKSAFLANMSHEIRTPMNGIVGMADLLCETVLTE 371 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 +QR ++ I SG +L I+ND+LD SKIE+ ++ LH EP L+ + E Sbjct: 372 DQRL----------FSETIRSSGEALLVIINDILDYSKIEANRLTLHPEPFDLERTIHEV 421 Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIII 727 L+Q A K I + F +P R + D ++Q+ N++ NA+ FT +G +++ Sbjct: 422 AMLLQPKARAKGIDLLIDFDLFLPTRFVGDPGRLRQVLTNLIGNAVKFTAAGHVLIRVVG 481 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 ++ + V DTG+G+ L+ F QI R EGTGLGL + + +++ Sbjct: 482 LEVAPGRHDLRVTVEDTGIGIAPEHLDHVFGEFNQIEAEATRRFEGTGLGLAITRRLIEL 541 Query: 788 NMGKFYIFSTPAKGT 802 G ++ S P +G+ Sbjct: 542 MQGAVWVESEPGRGS 556 >gi|300864100|ref|ZP_07108999.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300337916|emb|CBN54145.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1865 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 87/259 (33%), Positives = 143/259 (55%), Gaps = 13/259 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DIS+ KQ + +L+ AK+ A + KS+FLA +SHEIRTP+ AI+GFS++++ G + Sbjct: 1357 EDISDRKQTEVELAAAKEAAVAANRAKSEFLANMSHEIRTPMNAILGFSDLLQ----GSI 1412 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 +P+ Y N I SG +L ++ND+LD+SKIE+GK+ L +EPV + V E ++ Sbjct: 1413 SDPQPRAYLNSIAASGRTLLALINDILDLSKIEAGKLQLQYEPVDVRSLVREIQEILDPK 1472 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG-------GQIIISTT 730 A +K + + N+P IL D ++QI N + NA+ FT +G Q+ +S + Sbjct: 1473 ALKKSLSLLVEIDENVPTAILFDPIRLRQILFNTVGNALKFTEAGFVKISVRAQLDLSPS 1532 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 ++ ++ + + DTG+G+ + + F Q + GTGLGL + K + + G Sbjct: 1533 -SNRVQIEITIADTGIGICLEQQHSIFEAFKQSEGQSTRKYGGTGLGLAITKRLTEMLGG 1591 Query: 791 KFYIFSTPAKGTLIEIIFP 809 + S KG+ IFP Sbjct: 1592 TVRLESELGKGSAFTFIFP 1610 Score = 37.7 bits (86), Expect = 7.6, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 19/161 (11%) Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 ++L IL+ D I ++ I N+ K+FGY ++L K T+ L SV + Sbjct: 487 LRLSKILDIAKDAIISVDDLQTITLFNKGAEKIFGYTAAEVLGKSLTLLLPSRFDSVYSE 546 Query: 512 YLTEILSLD--LRQTLEK-ITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQ 566 T + D R+ E+ G K+ + I KL + Y+ + DISE Sbjct: 547 KFTNVPQSDEKTRRMEERNEVFGRRKDGTVFPAEASISKLELNGEKIYTAILRDISE--- 603 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL-TAIIGF 606 +KIAE + + +V E P+ AI+G Sbjct: 604 --------RKIAETSLREREERFRKVFEE--GPIGMAIVGL 634 >gi|257485912|ref|ZP_05639953.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331013483|gb|EGH93539.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 917 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR +Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQFDYLGT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ + + Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 + P L+ D ++QI N++SNAI FT G + + EE + + V+DTG Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|119510682|ref|ZP_01629810.1| two-component system sensory histidine kinase [Nodularia spumigena CCY9414] gi|119464636|gb|EAW45545.1| two-component system sensory histidine kinase [Nodularia spumigena CCY9414] Length = 574 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/257 (29%), Positives = 135/257 (52%), Gaps = 7/257 (2%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I + +L AK++AE S KS FLA VSHE+RTPL A+IG S+++++ Sbjct: 314 IERVSERTKELEQAKELAEAASKAKSVFLANVSHELRTPLNAVIGLSQLLQDDATDLDLT 373 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 +I I+ +G +L+++ND+LD+SKIE+GKM L+ E + + ++ + V+ + Sbjct: 374 GDFITDLETINSAGRHLLELINDILDLSKIEAGKMTLYPETFEIAKLINNVVLTVKSAID 433 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN------ 734 + ++ + + AD ++Q+ LN+LSN+ FT +G + ++ Sbjct: 434 KNNNILEVYCDQQLGTMYADQTRMRQVLLNLLSNSAKFTTNGKVTLTVKREKTDLPPEAA 493 Query: 735 -EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + + V DTG+GM+ + ++ KPF Q S R GTGLGL +++ G+ + Sbjct: 494 FDMITFSVTDTGIGMSESQQQQLFKPFTQGDTSTTKRYGGTGLGLAISRHFCQMMGGEVF 553 Query: 794 IFSTPAKGTLIEIIFPL 810 + S P G+ + PL Sbjct: 554 VKSQPGVGSTFTVHLPL 570 >gi|117925402|ref|YP_866019.1| Cache sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609158|gb|ABK44613.1| Cache sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1361 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 87/242 (35%), Positives = 132/242 (54%), Gaps = 8/242 (3%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ S KSDFLA +SHE+RTPL AII S ++ G L + IE I +GN +L Sbjct: 702 EEASQFKSDFLANMSHELRTPLNAIILISNLMSRDETGRL-DQESIERTRVIYNAGNDLL 760 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++ND+LD+SK+E+G+M +H E V E V E L + A EK+I +R F + + Sbjct: 761 RLINDILDLSKVEAGRMEVHLETVHSQELVEELEPLFRDSAQEKKIELR--FDDQLQGCF 818 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 +D + V QI N+LSNAI FT G I+ ++ + + L V DTG+G++ ++ Sbjct: 819 TSDHQKVVQILRNLLSNAIKFTAQGSVILRLAKSDHPQYPIRLSVTDTGIGISKDKMPYI 878 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + F Q+ S + GTGLGL + G+ + S KG+ ++ PL +HP Sbjct: 879 FEAFRQMDGSISRQYGGTGLGLAITHRFATLLKGEVELHSEEGKGSQFTLLLPL---AHP 935 Query: 817 HD 818 H+ Sbjct: 936 HE 937 >gi|330980175|gb|EGH78357.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 837 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR +Y Sbjct: 190 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQFDYLGT 245 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ + + Sbjct: 246 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 305 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 + P L+ D ++QI N++SNAI FT G + + EE + + V+DTG Sbjct: 306 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 365 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 366 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 422 >gi|312199411|ref|YP_004019472.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c] gi|311230747|gb|ADP83602.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c] Length = 1388 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/265 (31%), Positives = 140/265 (52%), Gaps = 18/265 (6%) Query: 559 HDIS----EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 HDI E +Q + +L + S +KS+FLA +SHE+RTPL +++ + ++ Sbjct: 834 HDIEVKNREIEQARQELEERARQLALASKYKSEFLANMSHELRTPLNSLLILAGLLARN- 892 Query: 615 FGPLGN--PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 P GN + +EYA+ I +G+ +L ++ND+LD+SK+E+GKM+LH EPV+L V + Sbjct: 893 --PKGNLTAKQVEYAHVIHSAGSDLLQLINDILDLSKVEAGKMDLHVEPVALAAVVDDLR 950 Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + EK + ++ A ++P R+L D + QI N+LSNA+ FT G++ ++ T Sbjct: 951 ATFTPVTTEKGLRLKVEIAPDVPGRLLTDRHRLAQILRNLLSNAVKFTEQ-GRVELTITM 1009 Query: 732 TS-------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + E V+ V DTG+G+ L++ F Q + R GTGLGL + + + Sbjct: 1010 MAPASGRPGGEHVLFAVTDTGIGIAEENLDRIFGAFQQGDGTTSRRYGGTGLGLSICREV 1069 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809 G+ S G+ + P Sbjct: 1070 ATLLGGEIRARSVYGSGSTFTLDLP 1094 >gi|209522722|ref|ZP_03271280.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209496771|gb|EDZ97068.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1493 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/250 (33%), Positives = 133/250 (53%), Gaps = 23/250 (9%) Query: 566 QEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + KN+ L AK AE S KS+FLA +SHEIRTP+ A+IG + ++ + P Sbjct: 712 EAKNQALEEAKLAAEIASRAKSEFLATMSHEIRTPMNAVIGMTGLLLDMEL----TPEQR 767 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 ++ I SG+ +L I+ND+LD SKIESGK+ L +P L + E + L+ A+EK + Sbjct: 768 DFVETIRTSGDALLTIINDILDFSKIESGKLELEKQPFKLRNCLEECLELLSGRADEKGL 827 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVI---- 738 + + P+ IL D+ ++Q+ +N++SNAI FT G I+ + TH ++ + Sbjct: 828 ELAYIIDPSTPKTILGDVTRLRQVLVNLVSNAIKFTSEGEVILAVKATHPDAKKDVKKSD 887 Query: 739 ------------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 VRDTG+G+ +++ K F Q+ S GTGLGL +++ + Sbjct: 888 DSDFTESHYVLQFEVRDTGIGIPPDRIDRLFKAFSQVDASTTREYGGTGLGLAISQRLSQ 947 Query: 787 ANMGKFYIFS 796 GK ++ S Sbjct: 948 LMNGKMWVAS 957 >gi|163848652|ref|YP_001636696.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222526588|ref|YP_002571059.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163669941|gb|ABY36307.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222450467|gb|ACM54733.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 915 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/261 (30%), Positives = 140/261 (53%), Gaps = 9/261 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +I+ +Q L AK+ AE+ ++ FL+ +SHE+RTPL A+I +E++ P Sbjct: 392 RNITAERQITADLLRAKEAAERTERAQAAFLSAISHEMRTPLNAVIASAELLLTDTLTP- 450 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 IE I G +L +VN++LD+SKIE+G++ + EP + V ++L + Sbjct: 451 SQRSLIET---IRIGGEALLALVNNVLDLSKIEAGRVEIAAEPTDVRAIVHAVLNLFKRE 507 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---HTSN 734 A++K +LI ++P I++D ++Q+ +N++SNAI FT GG +I ++ T + Sbjct: 508 ADQKGLLIEAVIDPHLPALIVSDPARLRQMLMNLVSNAIRFTDRGGVLITASVIGMATDH 567 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +V + VRDTG G++ + +PF + N Q R G GLGL ++ + G+ + Sbjct: 568 PQVEIAVRDTGTGISAQQRSHLFQPFNHVDND-QTRQSGAGLGLAISAQLAHLMGGELTV 626 Query: 795 FSTPAKGTLIEIIFPLYDTSH 815 P +G+ + PL ++ Sbjct: 627 AGQPGQGSTFTVTLPLQPVAY 647 >gi|148263634|ref|YP_001230340.1| multi-sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146397134|gb|ABQ25767.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 592 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 112/379 (29%), Positives = 186/379 (49%), Gaps = 45/379 (11%) Query: 437 DVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF-------GY 487 D+ RI + ++ E +L +IL +G+ + + +G I N A L G Sbjct: 234 DMSVRIEGQLARISTERNRLDTILRGMGEGLMVTDAKGTITLVNPAFRDLLAITEEVEGR 293 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 P+ DI R P ++ + Y T I S R LE+ITL + E+ +L+ + + Sbjct: 294 PLIDITRHP----------ALHSAYKTIIASKSER--LEEITLDAKGEKTILTHWVPLLD 341 Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 HDIS K+ +KI + DF+A VSHE+RTP+T I G++ Sbjct: 342 GDRLQGVVAVFHDISNIKR-------LEKI-------RRDFVANVSHELRTPVTVIKGYA 387 Query: 608 EVIKNQRFGPLGN--PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 E + + G L + R + + I + ++ DLL +S++ESG ++L V+++ Sbjct: 388 ETLLS---GALASDPERAVRFVEIIHSHSERLTSLIGDLLTLSELESGDVSLELSMVNIE 444 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 V A+ L++ A +K I I S P IL D ++Q+ +N+L NAI +TP G I Sbjct: 445 GTVRHALMLLEQKAADKGITIDCSTIKAAPPILGDRGRLEQVLINLLDNAIKYTPEKGTI 504 Query: 726 IISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 T ++EE +L+ V DTG+G+ +L + + F ++ ++ GTGLGL + K Sbjct: 505 ---TVKAADEEKMLKISVTDTGMGIPPKDLPRIFERFYRVDEARSREQGGTGLGLSIVKH 561 Query: 784 MVDANMGKFYIFSTPAKGT 802 +V A+ G + ST KG+ Sbjct: 562 IVQAHGGALSVESTVGKGS 580 >gi|322420797|ref|YP_004200020.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18] gi|320127184|gb|ADW14744.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18] Length = 933 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 99/357 (27%), Positives = 173/357 (48%), Gaps = 22/357 (6%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-------PFTVFLEQNTPSVMN 510 E + GI I I++ NR + GY E++L P EQ S + Sbjct: 327 FEQAAVGICHIALSDILIRINRRFCDILGYTQEELLGSTLEQTIHPEDRAAEQGQLSRLV 386 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 + + S+++RQ + +L L+ ++ + + D++ K+E + Sbjct: 387 NREIDNYSIEIRQIRKDGSLVWVN----LTKSLVCGRKGEPKYLVGVIEDVTA-KREALE 441 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L + + + S KS+FLA + HEIRTP+ A++G S + P+ Y I Sbjct: 442 LRRERDLVQAASRAKSEFLANMGHEIRTPMNAVMGLSRLALKSEL----VPKQRGYLEKI 497 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + +L+I+ND+LD SKIE+GK+ L +SL E + + L A EK + + Sbjct: 498 CSASRTLLNIINDILDFSKIEAGKVELEKTELSLHEVLGNISDMHHLKAQEKGLDFKMRL 557 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV----RDTG 745 A +PR +L D + Q+ N++ NA+ FT G +++++ E ++ V +DTG Sbjct: 558 APELPRKLLGDPLRLTQVLNNLIGNALKFTRRG-EVVVAVKPVEQGEGMVAVNFCVQDTG 616 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+T ++EK PF Q +S + GTGLGL +++ +V+ G+ + S P KG+ Sbjct: 617 IGITPEQMEKIFTPFTQADSSTTRQYGGTGLGLSISRQLVELMGGELQVQSVPEKGS 673 >gi|289677061|ref|ZP_06497951.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine [Pseudomonas syringae pv. syringae FF5] Length = 654 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR +Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQFDYLGT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ + + Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 + P L+ D ++QI N++SNAI FT G + + EE + + V+DTG Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|156054917|ref|XP_001593383.1| hypothetical protein SS1G_06305 [Sclerotinia sclerotiorum 1980] gi|154704085|gb|EDO03824.1| hypothetical protein SS1G_06305 [Sclerotinia sclerotiorum 1980 UF-70] Length = 1464 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 86/267 (32%), Positives = 134/267 (50%), Gaps = 20/267 (7%) Query: 560 DISEWKQEKNKLSH---------AKKIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEV 609 DI+E K +N L A + A KE+S KS FLA +SHEIRTP+ +IG +E+ Sbjct: 698 DITEIKDRENDLQMQERENTRLLANEAAAKEASRLKSQFLANMSHEIRTPIAGVIGMAEL 757 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + + E A I RS N +L ++ND+LD SK+ESG++++ SL V Sbjct: 758 LTDMNL----DEEQQECAENIQRSANALLTVINDILDFSKVESGRLDIEEVQFSLSVVVR 813 Query: 670 EAISLVQLYANEKRILIRTSFANNIPR---ILADLRSVKQIALNILSNAIHFTPSGG--- 723 + ++ A K ++ + + + ++ D V+QI N+L+N+I FT G Sbjct: 814 DVSKMLGFAAERKNLMFDSDITVGVDKDLIVMGDPGRVRQIITNLLTNSIKFTSEGRVKF 873 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 +I EV V DTG+G+ ++ KPF Q +S R GTGLGL ++K Sbjct: 874 SVIKEREDADTIEVKFVVEDTGIGIEEEVRKRLFKPFSQADSSTARRFGGTGLGLTISKN 933 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL 810 +VD G+ + S+ +GT P Sbjct: 934 LVDLMHGRITLESSLGQGTTATFWIPF 960 >gi|37523305|ref|NP_926682.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35214309|dbj|BAC91677.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 910 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 119/226 (52%), Gaps = 5/226 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +FLA VSHE+RTPL AI+G++++++ ++ R +E I+R+G ++ D+ Sbjct: 674 KDEFLATVSHELRTPLNAILGWTQILRRRKLDAESQARALET---IERNGRAQNQLIEDI 730 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+S+I +GK+ L P+ L + EA+ V L + K I + + + D + Sbjct: 731 LDVSRIITGKLKLDVRPLDLAAVIEEALDSVCLASEAKHIALHCTLDAEAASVSGDPARL 790 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +Q+ N+LSNAI FTP GG+I + +L VRD+GVG+T L + F Q Sbjct: 791 QQVVWNLLSNAIKFTPEGGRIDVRLA-ADGASALLSVRDSGVGITPEALPYIFERFRQAD 849 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809 S G GLGL + + +V+ + G S P +G L + P Sbjct: 850 GSNTRAFGGLGLGLAIVRHLVELHGGTVTAHSDGPGRGALFAVRLP 895 >gi|325263352|ref|ZP_08130087.1| sensor histidine kinase/response regulator [Clostridium sp. D5] gi|324031745|gb|EGB93025.1| sensor histidine kinase/response regulator [Clostridium sp. D5] Length = 1004 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 87/261 (33%), Positives = 141/261 (54%), Gaps = 12/261 (4%) Query: 559 HDISEWKQEKNK----LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 HDI K+E+++ L A A++ S KS FL+R+SHE+RTPL AIIG+ E+ K Sbjct: 599 HDIDMAKKEEDQRRKTLQDALAAAQQASETKSSFLSRMSHEMRTPLNAIIGYLELGKK-- 656 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 + +Y D + + +L I+ND+LD++ IESGK++L L E ++E + Sbjct: 657 -NADDTEKLWDYMAKSDIAAHQLLSIINDVLDMASIESGKLHLEKVQFELTEEINEIREM 715 Query: 675 VQLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + A K++ + ++ I+ D + QI +N+LSNA+ FTP+GG++ +S T+ Sbjct: 716 FESQAWHKKLDFQVLMDSSEKIYIMGDPLRLNQILINLLSNAVKFTPAGGKVTLSVKKTA 775 Query: 734 NEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 +E V DTG+GM+ L+ PF Q S + G+GLG+ + K +V Sbjct: 776 LQEGHVYYCFEVTDTGIGMSEEYLDSLFDPFVQQDASIARKYGGSGLGMSITKNLVTMKQ 835 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G + STP +GT+ + P Sbjct: 836 GTISVKSTPGEGTVFTVNLPF 856 >gi|242280762|ref|YP_002992891.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123656|gb|ACS81352.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 1670 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 105/388 (27%), Positives = 192/388 (49%), Gaps = 34/388 (8%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP---- 496 R+++ ++ +L I+E D +I+ G++L+ N+AV ++ G +D++ K Sbjct: 779 RLSENELRDSYQRLNDIIEFLPDPTIVIDSNGVVLAWNKAVEEVTGVSKQDMIGKADYEY 838 Query: 497 FTVFLEQNTPSVMNHYLTEILS--LDLRQTLEK---ITLGSTKEEKLLS----------- 540 F + P +++ L + L D ++LE+ + G + + Sbjct: 839 ALPFYGERRPILIDSALKDDLEPLTDRYESLERRYGMLYGEVYTPRAFNGQGAYFWGVAG 898 Query: 541 -LRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 LR K+ + C M +++E ++ + +L+ A+ AE + KS+FLA +SHEIRT Sbjct: 899 PLRDHSGKVVGAVEC----MRNVTERRRVEQELNRARLAAEAATRAKSEFLANMSHEIRT 954 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 P+ +IIGF ++++ + EY N + S + +L I+ D+LD SKIE+GK L Sbjct: 955 PMNSIIGFGHLMQSADL----DSAQREYLNKMMSSADSLLSIIGDILDFSKIEAGKFVLE 1010 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIH 717 LD + + ++V + A K I S ++P L D ++Q+ N+++NA+ Sbjct: 1011 AVEFQLDHVLEKICNMVSVKAESKGIDFILSVGPDVPLFLRGDPLRLEQVLTNLVNNAVK 1070 Query: 718 FTPSGGQIIISTTH---TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 FT G +I T T + VRD+G+G+++ E+ F Q S + GT Sbjct: 1071 FTDRGEVNLIVTCEENCTGEASIKFIVRDSGIGLSSEEVSVLFNSFTQADASTTRKYGGT 1130 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GLGL +A+++V+ G + S P +G+ Sbjct: 1131 GLGLAIARSLVELMGGTVSVESHPGEGS 1158 >gi|114571065|ref|YP_757745.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10] gi|114341527|gb|ABI66807.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10] Length = 597 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 86/254 (33%), Positives = 139/254 (54%), Gaps = 13/254 (5%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A++ A++ ++ K+DFLA++SHEIRTPL ++G + +++ PL + +E + Sbjct: 200 RLKDAREAADRANAAKTDFLAQMSHEIRTPLNGVLGMARGLRDT---PL-DEGQVEMVST 255 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG+L+L +VND+LD+SKIE+G++ L +SL + V +S + EKRI I +S Sbjct: 256 ICSSGDLLLSVVNDVLDLSKIEAGEIELETVDMSLVQIVDWTVSAFRPACVEKRITIESS 315 Query: 690 F---ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILRVR 742 A R D V+QI N++SNAI FT G I TS + V + V Sbjct: 316 IDPGAEGWYR--GDPTRVRQILSNLVSNAIKFTQIGTVSISVRCSTSPGDGTDRVEICVA 373 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ ++L+ + F Q +S GTGLGLP+ + + G+ + S P G+ Sbjct: 374 DTGIGVPAHKLQTIFQAFSQADSSTTRAYGGTGLGLPICRKLATLMGGEISVRSRPGCGS 433 Query: 803 LIEIIFPLYDTSHP 816 + + + T P Sbjct: 434 IFTVALRMPRTEAP 447 >gi|71906648|ref|YP_284235.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Dechloromonas aromatica RCB] gi|71846269|gb|AAZ45765.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 655 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 86/245 (35%), Positives = 132/245 (53%), Gaps = 8/245 (3%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 SE + LS + AE + KS FLA +SHEIRTPL AI G +I+ R G L P Sbjct: 259 SEIAERTAALSRSMHAAEAANHAKSSFLANMSHEIRTPLNAITGVLHLIR--REGLL--P 314 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 E+ + ID +G +LD++N +LD+SKIE+GK+ L P+S+ + +S+ A Sbjct: 315 GQAEHLDKIDTAGRHLLDLINGVLDLSKIEAGKLELTSLPLSIPVIIGNLVSMQHERATA 374 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVIL 739 K++ + T IP ++ D ++Q LN +SNA+ FT SG ++ + +++V+L Sbjct: 375 KQLRLETEIDPAIPEHLVGDGVRLQQALLNYVSNALKFTDSGRVLLRVRLIEAGSDDVLL 434 Query: 740 R--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 R V DTG+G+T ++ F Q+ NS R GTGLGL + + + G S Sbjct: 435 RFEVEDTGIGITGADMATLFSEFEQVDNSSTRRHGGTGLGLAITRKIAQLMGGDAGASSE 494 Query: 798 PAKGT 802 P G+ Sbjct: 495 PGHGS 499 >gi|89097664|ref|ZP_01170552.1| two-component hybrid sensor and regulator [Bacillus sp. NRRL B-14911] gi|89087523|gb|EAR66636.1| two-component hybrid sensor and regulator [Bacillus sp. NRRL B-14911] Length = 956 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 103/385 (26%), Positives = 180/385 (46%), Gaps = 54/385 (14%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYP-----------------VEDILRKP--F 497 IL +GI +++R G IL NR + ++F P + + + +P F Sbjct: 465 ILNTVQEGIQMVSRSGAILQANRQLEEMFTCPGAAGRLENLPWEIWSAEMANKVEQPDEF 524 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 FL+ S + E + ++QT + I + C L Sbjct: 525 LAFLQNAVHS--DSCEMESIIYQMKQTGQVIKM---------------------YCEGLG 561 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 D ++ L H E E KS+F++ VSHE+RTPL +I+GF+E++ N+ Sbjct: 562 QED----ERIGTVLVHRDITKEFEVDQMKSEFVSTVSHELRTPLASILGFTELMLNRELK 617 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P +Y+ I + ++ND LD+ ++E+GK + + L + + I Q Sbjct: 618 PDKQKKYL---TTIYNEARRLTSLINDFLDVQRMEAGKQTYEKKYLRLLPIIEQVIEKQQ 674 Query: 677 LYANEKRILIR-TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + + +I I S N++ IL D V+Q+ N++SNA+ ++P GG III + ++ Sbjct: 675 INTDIHKIKIDDRSIGNDV--ILGDKSKVEQVFTNLISNAVKYSPGGGDIIIRL-YQEDK 731 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V+ V D G+G+ L+K F ++ NS + R GTGLGL + + ++ A+ G + Sbjct: 732 SVLAEVEDKGLGIPEDALDKLFTKFYRVDNSDRRRIGGTGLGLSIVQEIMKAHSGSISVA 791 Query: 796 STPAKGTLIEIIFPLYDTSHPHDCI 820 S+ KG++ + FPL +T+ I Sbjct: 792 SSYGKGSIFTLSFPLIETAEEPGAI 816 >gi|171060137|ref|YP_001792486.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170777582|gb|ACB35721.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 1333 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/261 (30%), Positives = 144/261 (55%), Gaps = 17/261 (6%) Query: 554 YSLTMHDISEWKQEKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 + + + DI+E K + KL+ A + AE ++ KS+FLA +SHEIRTP+ AI+G Sbjct: 549 FFVQVSDITELKAAQRKLADANAELAARTRQAESANAAKSEFLANMSHEIRTPMAAIVGL 608 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 S +++N R NP + + + ++ +++D+LD+SKIE+G++ + SL Sbjct: 609 SHLLENSRL----NPDQQDLLRKMRGASKSLMAVIDDVLDLSKIEAGELRIDRSAFSLQA 664 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQI 725 + + L+ L A+++ + + +P L DL ++Q+ N+LSNA+ FT + G++ Sbjct: 665 LLDDLRGLMALSAHDRTLELVMRCDAGLPDQLDGDLMRLRQVLNNLLSNALKFT-TVGEV 723 Query: 726 IISTTHTSNEEVILR----VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 ++ + + LR VRD+G+G++ E + +PF Q+ S R GTGLGL ++ Sbjct: 724 LLQVALVARQSGRLRLRFTVRDSGIGISAAEQARLFRPFAQVDASTTRRYGGTGLGLVIS 783 Query: 782 KAMVDANMGKFYIFSTPAKGT 802 + +V G + S P KG+ Sbjct: 784 RRLVRLMGGDISLRSAPGKGS 804 >gi|119492436|ref|ZP_01623757.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] gi|119453102|gb|EAW34271.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] Length = 885 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 114/357 (31%), Positives = 190/357 (53%), Gaps = 31/357 (8%) Query: 477 TNRAVSKLFGYPVEDILR---KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 TN A +K GY ++ L+ K +N S+ L + S T E I T Sbjct: 306 TNEAATKTLGYSRDEFLQMQVKDIDPNASENQWSISWENLRQQGSF----TFESIHKMKT 361 Query: 534 KEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 E +S+ I + L +++ C + DISE K + L AK+ AE + KS+FL Sbjct: 362 GEH--ISVEITLSYLEYNNKEYGC--AVVRDISERKHTEIVLQQAKEAAEAANRSKSEFL 417 Query: 590 ARVSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 AR+SHE+RTPL AI+GF++++ +R + + E+ I RSG +L+++ND+L++ Sbjct: 418 ARMSHELRTPLNAILGFTQLMNRDLKRKQSVLLQDHQEHLEIIGRSGEHLLNLINDVLEM 477 Query: 648 SKIESGKMNL---HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703 SKIE+G+++L HF+ + L + + +++L A K + + +++P+ I D Sbjct: 478 SKIEAGQISLNSAHFDLLKLLHCLRD---MLELKAQSKGLKLLFEIDSDVPQYIQTDESK 534 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPF 760 ++Q+ +N+L NAI FT +G II+ T N + +I V DTG G++ EL+ KPF Sbjct: 535 LRQVLINLLGNAIKFTDAGC-IILRTKTVKNSKANRLIFEVEDTGYGISPEELQYVFKPF 593 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE--IIFPLYDTSH 815 Q ++ + +GTGLGL +++ + GK + S +GT I F +TSH Sbjct: 594 IQTETGRKSQ-QGTGLGLSISQKFIKLMGGKITVSSQLGQGTCFRFNINFKPANTSH 649 >gi|258516237|ref|YP_003192459.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257779942|gb|ACV63836.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 496 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 139/239 (58%), Gaps = 3/239 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ + DF+A VSHE+RTPLT I G++E + + F R +Y N + + Sbjct: 261 ERLDQTRRDFVANVSHELRTPLTIIQGYTEALLDG-FAETEEERQ-QYLNNVLEESQRLQ 318 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +VND+LD+ +ESGKM L+ + V L + +++ + + + +K++ + S + Sbjct: 319 RLVNDVLDLRSLESGKMVLYKQKVDLTKLLAKVAGIFKPFYAQKQVFLSLSAEEVWEAVY 378 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 AD ++Q+ +N++ NA+ TP+GG++ IS+ ++V + V+D+G G+++ +L + Sbjct: 379 ADPDRLEQVFVNLIDNALRHTPAGGEVKISSA-LETDKVFVTVKDSGPGISSKDLPLIWE 437 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 F ++ ++ GEG+GLGL + KA++DA+ G + S P +GT++ + P++ + H Sbjct: 438 RFYKVDKARSRGGEGSGLGLAITKAIIDAHGGWVEVTSEPGRGTVMTVCLPVFRENAVH 496 >gi|330949799|gb|EGH50059.1| response regulator receiver:ATP-binding region [Pseudomonas syringae Cit 7] Length = 917 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR +Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQFDYLGT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ + + Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 + P L+ D ++QI N++SNAI FT G + + EE + + V+DTG Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|319898223|ref|YP_004158316.1| sensor histidine kinase [Bartonella clarridgeiae 73] gi|319402187|emb|CBI75718.1| Putative sensor histidine kinase [Bartonella clarridgeiae 73] Length = 825 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 109/394 (27%), Positives = 198/394 (50%), Gaps = 26/394 (6%) Query: 429 PQNGIEP--EDVDTRIN-KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 PQ G+ E++ +I+ +R+ + L+ S+G+ + +G + +N A+SKL+ Sbjct: 438 PQGGVTWLYENLTEKIDLERRYNTLIKIQGETLDKLSEGVVVFGTDGRLRLSNPALSKLW 497 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 P ++ + + NH + +Q + IT G ++ S RI + Sbjct: 498 SLPHNLLVEGT-------HITQLQNHCSALTTGEEWKQFTQFIT-GFAEKRDAYSGRIDL 549 Query: 546 KK----------LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 K LP LT ++++ L + EK +++F+ VS+E Sbjct: 550 KSGIIIDYTLAPLPNGQTM-LTFVNVTDTVHIARALQEKNEALEKADRLRNEFVQHVSYE 608 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 +RTPLT IIGFS+++++Q FG + N R EY YI ++L+IVND+LD++ +++G M Sbjct: 609 LRTPLTNIIGFSDILRDQIFGSI-NERQQEYLGYIHSESGVLLNIVNDILDLATLDAGIM 667 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 L +PV + EA+++A++ V+ + ++I + + ++ I AD++ + QI +N+LSNA Sbjct: 668 ILDIKPVHIAEAMTQAVARVEERLHGRQITLSQHISPSLKFISADVKRLHQIFVNVLSNA 727 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 I+F I T + +I V + G + L++ K F +S G G Sbjct: 728 INFATEKSTIEFRAD-TQGDHIIFSVHNEGSDIPTDILDRIFKRFS--SHSHHGGRAGAG 784 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 LGL L K+ V+ + G+ IF+ +GT ++ FP Sbjct: 785 LGLSLVKSFVELHDGRVEIFTGMGQGTTVKCFFP 818 >gi|1346440|sp|P48027|GACS_PSESY RecName: Full=Sensor protein gacS gi|151329|gb|AAA25877.1| regulatory protein [Pseudomonas syringae] Length = 907 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR +Y Sbjct: 260 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQFDYLGT 315 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ + + Sbjct: 316 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 375 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 + P L+ D ++QI N++SNAI FT G + + EE + + V+DTG Sbjct: 376 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 435 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 436 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 492 >gi|119490633|ref|ZP_01623038.1| Multi-sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] gi|119453798|gb|EAW34955.1| Multi-sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] Length = 1016 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/251 (32%), Positives = 133/251 (52%), Gaps = 11/251 (4%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L + AE + KS+FLA +SHEIRTP+ AI+GF ++++ G + PR Y I Sbjct: 520 LEQVAQRAEIANQAKSEFLANMSHEIRTPMNAILGFCDLLQ----GLVTEPRQRSYLELI 575 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG +LD++ND+LD+SKIE+GK L++EP++L + ++E + A EK + + + Sbjct: 576 AASGESLLDLINDILDLSKIEAGKFQLYYEPLNLRQLIAEVQKIFTHRAKEKGLSLISHI 635 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI-----LRVRD 743 + +P+ I D ++QI N+L NAI FT G QI I + E + + + D Sbjct: 636 DDAVPQGIYFDGIRLRQILFNVLGNAIKFTERGFIQISIRAQVYTQENIKKVWLEIAITD 695 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ + + + F Q + GTGLGL + + + G + S + G+ Sbjct: 696 TGIGIAKNQQDDIFEAFVQSEGQSTRKYGGTGLGLAITRRLTTLLGGTLVLQSELSHGSS 755 Query: 804 IEIIFPLYDTS 814 IFP + S Sbjct: 756 FIFIFPEIEVS 766 >gi|110634292|ref|YP_674500.1| multi-sensor hybrid histidine kinase [Mesorhizobium sp. BNC1] gi|110285276|gb|ABG63335.1| multi-sensor hybrid histidine kinase [Chelativorans sp. BNC1] Length = 1038 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/254 (31%), Positives = 143/254 (56%), Gaps = 4/254 (1%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + + L + E+ S +KS+FLA +SHE+RTPL +++ + ++ + R G L + + Sbjct: 343 ELSRAQGALQAKARDLEEASRYKSEFLANMSHELRTPLNSLLIMARLLADNREGNLTSDQ 402 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +++A I+ +GN +L+++ND+LDISKIE+G + L E V ++ + + + Q A+EK Sbjct: 403 -VKFAETIETAGNDLLNLINDILDISKIEAGHIELQIERVRVEPMLEKLRATFQSSASEK 461 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + R P RI +D + ++Q+ N LSNAI FT G++++S + + V Sbjct: 462 GLNFRIETVPGTPDRIESDPQRIEQVLKNFLSNAIKFTEK-GEVVLSVAEEEDGRIAFAV 520 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RDTG+G+ + + + F Q S + GTGLGL ++ + G+ + ST +G Sbjct: 521 RDTGIGIPEDQQQAIFEAFRQADGSINRKYGGTGLGLSISSELTRVLGGEIRVESTVGQG 580 Query: 802 TLIEIIFP-LYDTS 814 + ++ P +YD + Sbjct: 581 SSFILVVPKIYDAA 594 >gi|160901448|ref|YP_001567030.1| PAS/PAC sensor hybrid histidine kinase [Delftia acidovorans SPH-1] gi|160367032|gb|ABX38645.1| PAS/PAC sensor hybrid histidine kinase [Delftia acidovorans SPH-1] Length = 1044 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 102/357 (28%), Positives = 175/357 (49%), Gaps = 38/357 (10%) Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 G +L NR LFGY ++++ + +F E H Q ++ G Sbjct: 539 GQVLRANRNFLDLFGYRLDEVAGRHHGMFCEPGYAHTPEH----------EQFWRRLAEG 588 Query: 532 STKEEKLLSL-----RIIIKKL----------PFSSCYSLTMHDISEWKQEKNKLSHAKK 576 + + L RI ++ P+ LT DIS ++ +L AK+ Sbjct: 589 EFQAGEFLRCGREGRRIWVQATYNPIRDADGRPYKIVKLLT--DISAQRKLAQELVLAKE 646 Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 AE ++ +S FLA +SHEIRTP+ AIIGF+E ++ P RY++ +Y RS Sbjct: 647 HAEAAAAARSTFLANMSHEIRTPMNAIIGFTEALRETALQPT-QARYLDTVHYAARS--- 702 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 +L ++ND+LD +K++ G + L E S+ E + ++ +++ A+ K + +R + + P Sbjct: 703 MLRLLNDILDTAKLDKGAVELEIEDFSVRELCQQILASLRITADRKGLDLRLDYDPHTPA 762 Query: 697 IL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VRDTGVGMTNYEL 753 L D V+QI +N+L NA+ FT G +++ + E+ +L+ V DTG+G+ ++ Sbjct: 763 ALRGDGMRVQQILVNLLGNAVKFTER-GHVLLRVRY---EQGVLQLDVHDTGIGIAPEKI 818 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + PF Q S R GTGLG +++ + + G + ST GT+ E+ PL Sbjct: 819 HRIFDPFAQADASTTRRFGGTGLGTTISRQLAELMGGSIQLHSTVGVGTVFEVRLPL 875 >gi|300868141|ref|ZP_07112775.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300333876|emb|CBN57955.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 1055 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 149/262 (56%), Gaps = 23/262 (8%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI++ K + L AK A+ + KS+FLA +SHE+RTPL I+G+++++ QR Sbjct: 551 TFQDITDRKNAEVTLQEAKLAADAANQAKSEFLANMSHELRTPLNGILGYAQIL--QRDS 608 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAIS 673 L P+ + N I + G+ +L ++ND+LD+SKIE+ KM L+ F + + VSE Sbjct: 609 SL-TPKQLAEINIIYKCGSHLLTLINDILDLSKIEARKMELYPSSFYFLGFLQVVSE--- 664 Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII------ 726 + ++ A +K I +F +P ++ AD + ++Q+ +N+L NA+ FT +G Sbjct: 665 ICRIKAEQKGISFICNFDAALPYVVEADEKRLRQVLVNLLGNAVKFTDAGAVTFKVAVVD 724 Query: 727 ------ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 ++T T+ + ++ DTGVGMT+ +++K +PF Q+ +++++ EGTGLGL + Sbjct: 725 LISVESTTSTLTNINTIRFQIEDTGVGMTSEQMQKIFQPFEQVGDTRRMV-EGTGLGLAI 783 Query: 781 AKAMVDANMGKFYIFSTPAKGT 802 + +++ + S G+ Sbjct: 784 SLKIIEMMGSSIKVASKSQAGS 805 >gi|325679103|ref|ZP_08158697.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Ruminococcus albus 8] gi|324109227|gb|EGC03449.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Ruminococcus albus 8] Length = 1329 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/253 (33%), Positives = 142/253 (56%), Gaps = 11/253 (4%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 ++ N++ AK+ AE+ +S KS FLA +SHEIRTP+ I+G +E++ + + N ++ Sbjct: 789 RQYNEIRSAKEEAERANSAKSRFLANMSHEIRTPINTIMGMNEMLLREDPTGVPNSYFMS 848 Query: 626 YANY---IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 NY I + +L ++NDLLD+SKIESGKM+L + + + + A++L+++ + EK Sbjct: 849 VMNYAFDIRNASESLLGLINDLLDMSKIESGKMHLVEQEYDVQDMLRSAVALIRVRSVEK 908 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EV 737 + + +P R+ D+ +KQI +N+LSNA+ +T GG I++S T T E + Sbjct: 909 ALTFDVAVDEVMPRRMFGDMGKIKQILVNLLSNAVKYTTVGG-IMLSVTMTEREGDTASL 967 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 VRDTG+G+ ++ K + ++ EGTGLGL ++ GK S Sbjct: 968 RFSVRDTGIGIKQEDMGKLFNAYERLDEELNSGIEGTGLGLDISGRFAALMGGKIECESV 1027 Query: 798 PAKGTLIEIIFPL 810 +G+ E IF + Sbjct: 1028 YREGS--EFIFTV 1038 >gi|152985475|ref|YP_001347049.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa PA7] gi|150960633|gb|ABR82658.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa PA7] Length = 918 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/256 (31%), Positives = 135/256 (52%), Gaps = 12/256 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL-- 618 I+ K+E + A + A E+ KS FLA++SHEIRTPL ++G +++++ PL Sbjct: 384 INALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDT---PLDR 440 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 G +E I SGN ++ ++ND+LD ++IESGK+ L L+E +S+ ++L Sbjct: 441 GQAACVET---IASSGNALMSVINDILDYARIESGKLQLERIDFDLEELLSDTLALFGAQ 497 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSN 734 A EKR+ + +PR L D ++Q+ N+L NA+ FT G ++ Sbjct: 498 AREKRLRLHLGLDRGVPRRLNGDPTRLRQVLTNLLGNALKFTAEGHVALRVQRRFDEAGR 557 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E ++ V D+G+G++ + F Q +S R G+GLGL +++ +V G+ + Sbjct: 558 ERLLYSVSDSGIGISAQAQATLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEV 617 Query: 795 FSTPAKGTLIEIIFPL 810 S P KGT + PL Sbjct: 618 SSEPGKGTRFSVDLPL 633 >gi|183220472|ref|YP_001838468.1| putative two-component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167778894|gb|ABZ97192.1| Putative two-component response regulator; putative membrane protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 807 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 136/250 (54%), Gaps = 10/250 (4%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG-NPRYI 624 + K KL K++A E KS FL+ +SHEIRTP+ I+G + Q FG Sbjct: 407 KNKEKLKQEKELALAEVRFKSAFLSTMSHEIRTPMNGILGMT-----QMFGQTSLTDEQK 461 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EY + I SG +L +VND+LD++K+E+GK L E + L + +++ + L + N + + Sbjct: 462 EYLSLIQFSGENLLLLVNDILDLTKLEAGKFELRLETIVLSKFLNDMVQLFRSKINTQYV 521 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVILR 740 + ++P+ I+ D R QI N+L NAI FT +G +I + + ++ L+ Sbjct: 522 NLELVTNTDLPKHIITDQRRFNQIISNLLGNAIKFTETGTISLIVWSDPIDSKKCKLNLQ 581 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 ++DTG+G+ N +L +PF QI + + GTGLGL + K +V+ GK + S K Sbjct: 582 IKDTGIGIPNEKLNDLFQPFLQIHSHLSGKTNGTGLGLTITKKIVEEMSGKISVLSELGK 641 Query: 801 GTLIEIIFPL 810 G++ + P+ Sbjct: 642 GSVFHVEIPV 651 >gi|154247250|ref|YP_001418208.1| histidine kinase [Xanthobacter autotrophicus Py2] gi|154161335|gb|ABS68551.1| histidine kinase [Xanthobacter autotrophicus Py2] Length = 278 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/229 (35%), Positives = 125/229 (54%), Gaps = 10/229 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHE+RTPL ++GFSE++ ++ GP P Y YA I SG +L + +DL Sbjct: 49 KSRFLAEMSHELRTPLNTVMGFSEMMADEVLGPHRVPAYGTYARDIHASGQHLLALADDL 108 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+++IESG L PV LD + +++++ A+ R+ + A PR+ D R++ Sbjct: 109 LDLARIESGHRTLMETPVRLDALAEDCVAMMRPLASGARVTLTAEVAGT-PRLWGDERAL 167 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI- 763 +QIALN+L+NA+ FTP G + + ++ L V DTG G+ EL P G Sbjct: 168 RQIALNLLANAVKFTPHHGSVHLLAGIGADGVPFLAVEDTGPGIAEREL-----PLGAAH 222 Query: 764 PNSQQI---RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 P ++ G G GLGL + + + + G + P GT E+ FP Sbjct: 223 PRESRVDLATGRGAGLGLAIVRGLAGLHGGALALERRPGGGTRAEVTFP 271 >gi|283853674|ref|ZP_06370906.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283570945|gb|EFC18973.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 1071 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 98/394 (24%), Positives = 183/394 (46%), Gaps = 34/394 (8%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF----- 497 + R M I + + E + GIA+++ +G L NR + + GY E+++ F Sbjct: 536 HARNMWISERRFQATFELAAVGIALVSPQGRWLRVNRKLCDIVGYAAEEMVGMTFQKITH 595 Query: 498 -------TVFLEQNTPSVMNHYLTE---------ILSLDLRQTLEKITLGSTKEEKLLSL 541 ++Q V N Y E ++ ++L L + G+ + + + Sbjct: 596 PEDLESDMALVQQVLGGVTNTYNREKRYIRKDGTVVWINLTVALVRDAAGA-PDYFISVV 654 Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 I ++ L+ D+ ++ + +H + AE + KS FLA +SHEIRTPL Sbjct: 655 EDIDRRKAIEEQLRLSKDDL---ERAARQATHLARRAEAANLAKSAFLANMSHEIRTPLN 711 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 ++G +++K + +EYA+ RSG + ++ D+LD+S+IE+ +M L P Sbjct: 712 GLLGMMQLLKTTVL----DEEQLEYADMAIRSGGRLTRLLGDILDLSRIEAERMALSLAP 767 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTP 720 L + + EK + + A ++P +L D V+QI N+ NA+ FT Sbjct: 768 FRLADVFAAITETFAPLVREKGLPLACRAAPDVPGVLVGDEMRVRQILFNLTGNAMKFTE 827 Query: 721 SGGQII----ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 +G + +++ ++ V DTGVG+ + +++ +PF Q +S +G GL Sbjct: 828 AGSVAVEVSSLASPDPGQARLLFTVADTGVGIPDDKIDTVGEPFTQADSSYTRDQQGAGL 887 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GL +++ + + G I S P +GT + ++ PL Sbjct: 888 GLTISRQLTELMGGTLTIESEPGQGTTVYLMLPL 921 Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 105/228 (46%), Gaps = 12/228 (5%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K+ F A VSHE+RTPLT I+G +R + ++R+ L+ V+DL Sbjct: 150 KTRFFANVSHELRTPLTLILG----PLARRLEACADDAARADLRVMERNALLLHRHVSDL 205 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA---DL 701 LD++K+++G+M + + S + A EKRI F P L+ D+ Sbjct: 206 LDVAKLDAGRMETRYARADVARLARFMGSCFESLAREKRI----RFTIAAPERLSAAVDV 261 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 V++I N+LSNA FTP GG + + + V + V D G G+ + + F Sbjct: 262 EKVRRILQNLLSNAFKFTPDGGAVDVR-LEEDGDWVAMTVADNGPGVPPALRQAVFERFR 320 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q+ R GTGLGL +A+ + G + ++P G + P Sbjct: 321 QLDGGADRRHGGTGLGLAIAREFAVLHGGDILLDASPGGGASFTVTLP 368 >gi|196230968|ref|ZP_03129828.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196224798|gb|EDY19308.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 977 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI+E K + +LS A A + + KS FLA +SHEIRTP+ +IG + ++ + Sbjct: 316 TVEDITERKYVEAQLSKACDAALESARLKSRFLANMSHEIRTPMNGVIGMTNLLLDTSL- 374 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 N ++A I S +L ++ND+LD SKIE+GKM +L + V + L+ Sbjct: 375 ---NNEQRDFAETIRASAEGLLTVINDILDFSKIEAGKMTFEDLDFNLHDVVESTLELLA 431 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----H 731 A+ K I + N+P R+ D ++Q+ N++SNAI FT + G++ I T+ Sbjct: 432 KQAHTKGIELAGFIEPNVPTRLRGDAGRIRQVLTNLVSNAIKFTQT-GEVTIRTSCLDDQ 490 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 S ++ L+V DTGVG++ + + F Q S R GTGLGL + K +V+ G Sbjct: 491 GSQCQLRLQVSDTGVGISPEAQKNLFEAFNQADASTTRRFGGTGLGLAICKQLVEKMHGC 550 Query: 792 FYIFSTPAKGTL 803 + STP KG++ Sbjct: 551 IGLESTPGKGSI 562 >gi|172057086|ref|YP_001813546.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171989607|gb|ACB60529.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 679 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+ ++ VSHE+RTPL++I GF+E++ ++ P N RY++ + D S L D+V+D Sbjct: 450 KSELVSTVSHELRTPLSSIYGFTELMLKRKLDPERNKRYLQTIH--DESKRLT-DLVSDF 506 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 L++ ++ESGK + E L + V E Q + R+ + N+ I AD S+ Sbjct: 507 LNVQRMESGKHSYDKEVFDLIDTVREQTRFYQASTEQHRLQLDVD-ENHEFLIHADKNSM 565 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 KQ+ N+L NAI ++P GG ++IS TH N+ + L VRD G+G+ + + F ++ Sbjct: 566 KQLLGNLLHNAIKYSPDGGDVVISLTHHHNQ-IELSVRDFGLGIPSSAMPHLFSKFYRVD 624 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 NS + GTGLGL + K +V A+ G + S +GT+ +++ P Sbjct: 625 NSDSRKIGGTGLGLSICKEIVRAHDGNIDVESILGEGTVFKVLLP 669 >gi|329909928|ref|ZP_08275149.1| sensor histidine kinase/response regulator [Oxalobacteraceae bacterium IMCC9480] gi|327546367|gb|EGF31381.1| sensor histidine kinase/response regulator [Oxalobacteraceae bacterium IMCC9480] Length = 500 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/257 (30%), Positives = 141/257 (54%), Gaps = 8/257 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L + +I+ ++ +L AK+ AE + K+ F+ +SHE+RTPL +I+G++++++ F Sbjct: 20 LLLQEIAAHEKTDAELQRAKEAAESANLAKTRFITGMSHELRTPLNSILGYAQILQ---F 76 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P P + + I RSGN +L +++ LLDI+KIE+GKM L + ++L + + + + Sbjct: 77 DPAMPPHRKDAIDVIHRSGNHLLSLIDGLLDIAKIEAGKMRLDTDELALPAFLEQIVQMF 136 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A EK + +P ++ AD + V+QI +N+L NA+ FT +G + + Sbjct: 137 APLAAEKGLAFAFVCDGRLPGVVRADHKRVRQILINLLGNALKFTDTGA--VTLRLNYVR 194 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + + DTG+GMT E E+ PF + ++ GTGLGL ++ + G + Sbjct: 195 DMAHFSIEDTGIGMTADEAERIFFPFERTVSADLRAAAGTGLGLTISNMLTHIMGGDLTV 254 Query: 795 FSTPAKGT--LIEIIFP 809 STP +G+ L+++ P Sbjct: 255 TSTPGRGSCFLLKLYLP 271 >gi|302185510|ref|ZP_07262183.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine [Pseudomonas syringae pv. syringae 642] Length = 917 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR +Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQFDYLGT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ + + Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 + P L+ D ++QI N++SNAI FT G + + EE + + V+DTG Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|189910583|ref|YP_001962138.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775259|gb|ABZ93560.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 812 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 136/250 (54%), Gaps = 10/250 (4%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG-NPRYI 624 + K KL K++A E KS FL+ +SHEIRTP+ I+G + Q FG Sbjct: 412 KNKEKLKQEKELALAEVRFKSAFLSTMSHEIRTPMNGILGMT-----QMFGQTSLTDEQK 466 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EY + I SG +L +VND+LD++K+E+GK L E + L + +++ + L + N + + Sbjct: 467 EYLSLIQFSGENLLLLVNDILDLTKLEAGKFELRLETIVLSKFLNDMVQLFRSKINTQYV 526 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVILR 740 + ++P+ I+ D R QI N+L NAI FT +G +I + + ++ L+ Sbjct: 527 NLELVTNTDLPKHIITDQRRFNQIISNLLGNAIKFTETGTISLIVWSDPIDSKKCKLNLQ 586 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 ++DTG+G+ N +L +PF QI + + GTGLGL + K +V+ GK + S K Sbjct: 587 IKDTGIGIPNEKLNDLFQPFLQIHSHLSGKTNGTGLGLTITKKIVEEMSGKISVLSELGK 646 Query: 801 GTLIEIIFPL 810 G++ + P+ Sbjct: 647 GSVFHVEIPV 656 >gi|332712276|ref|ZP_08432204.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332349082|gb|EGJ28694.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 549 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 94/316 (29%), Positives = 167/316 (52%), Gaps = 45/316 (14%) Query: 520 DLRQTLEKITLGST--------KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 D+ ++ ++LG+ +EE L +R+ +K Y LT ++ L Sbjct: 92 DINHKIKGLSLGAVDYIPKPFEQEEVLARVRLHLK------LYFLT----KTLAEQNAYL 141 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG--------NPRY 623 AK+ AE + KS+FLA +SHE+RTPL I+G+++++ QR L + Sbjct: 142 QEAKEKAEVANQAKSEFLANMSHELRTPLNGILGYAQIL--QRDAALAASKGERNLTAKQ 199 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 +E I +SG+ +L ++ND+LD+SKIE+GKM L+ +L + E + ++++ A+EK Sbjct: 200 LEGLKIIQKSGSHLLTLINDILDLSKIEAGKMALYPTEFNLLTFLEEVVGIIRMRASEKN 259 Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHTSNEE- 736 I++R N+P + AD + ++Q+ +N+L NA+ FT G +I TS ++ Sbjct: 260 IVLRFEQNTNLPTGVKADEKRLRQVLINLLDNAVKFTDQGNVTFNVGVIEDQNPTSLDQG 319 Query: 737 ---------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + V DTG+G++ +LE +PF Q +S + R GTGLGL +++ +V+ Sbjct: 320 KDSQIQHRTIRFEVIDTGIGISPQQLETIFQPFEQTGDS-KYRAAGTGLGLAISRQLVEF 378 Query: 788 NMGKFYIFSTPAKGTL 803 + + S KG++ Sbjct: 379 MGSQLNVKSELIKGSM 394 >gi|323694410|ref|ZP_08108581.1| hypothetical protein HMPREF9475_03445 [Clostridium symbiosum WAL-14673] gi|323501491|gb|EGB17382.1| hypothetical protein HMPREF9475_03445 [Clostridium symbiosum WAL-14673] Length = 801 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 87/277 (31%), Positives = 147/277 (53%), Gaps = 22/277 (7%) Query: 556 LTMHDISEWKQEKNK----LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE--- 608 L + DI + K+E+ + L +A +AEK + K+DFL+R+SH+IRTP+ I+G + Sbjct: 372 LYLKDIDDVKKEEERKQRELQNALAMAEKANEAKTDFLSRMSHDIRTPMNVIVGMASVAR 431 Query: 609 -VIKNQRFG--------PLGN-PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 V++++ G GN + + I+ S +L ++ND+LD+SKIESGKM + Sbjct: 432 FVLQSEVKGTANLQCDEKTGNYAKLLNCLEKIEMSSAFLLSLINDILDMSKIESGKMKIA 491 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIH 717 ++L +A+ +++ A E+R S A + D + QI LN+L NA+ Sbjct: 492 NREMNLKDAIRNIKVMIEAQAEERRQTFLVSVAPEVGEFYYCDSLRLNQILLNLLGNALK 551 Query: 718 FTPSGGQIIISTTH---TSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 +TP G+I + T + E++I + DTG+GM+ + + PF Q EG Sbjct: 552 YTPEQGEIRLCVTAGKVEAGEQLIWFIISDTGIGMSEEFMARMFDPFEQQDFGGSRIFEG 611 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 TGLGL +++ +V+ G S P+KGT+ + P+ Sbjct: 612 TGLGLSISRKLVELLNGTISAESEPSKGTVFTVKIPM 648 >gi|266619432|ref|ZP_06112367.1| sensory box sensor histidine kinase/response regulator [Clostridium hathewayi DSM 13479] gi|288869024|gb|EFD01323.1| sensory box sensor histidine kinase/response regulator [Clostridium hathewayi DSM 13479] Length = 502 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/247 (30%), Positives = 134/247 (54%), Gaps = 10/247 (4%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNL 636 AE E+ K FL+R+SHE+RTP+ A++G +E+ G P + E + S + Sbjct: 118 AEAENRAKGAFLSRMSHELRTPMNAVVGLAELAGMTE----GVPENVREMLVKLRASSHY 173 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 +LD++ND+LD+S+++SG + EP SL+E + E ++++ A ++ ++ + R Sbjct: 174 LLDLINDILDMSRLDSGMLETASEPFSLEELLGELRTMMETEAGKRGLICEMEADVDHSR 233 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILRVRDTGVGMTNYE 752 + D ++Q+ +N+LSNA FTP GG + + T + + + RV DTGVG+ + Sbjct: 234 VTGDSIRLRQVLMNLLSNAFKFTPEGGTVTLRVTEKTGVNGSADFDFRVTDTGVGIAPED 293 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 E+ F Q+ + R +GTGLGLP+++++V G+ + S P G+ L Sbjct: 294 QERIFDTFEQM-GTNYSRSQGTGLGLPISRSIVQLMGGELRVKSEPGHGSEFYFTLTLPL 352 Query: 813 TSHPHDC 819 S +C Sbjct: 353 DSLSEEC 359 >gi|169600681|ref|XP_001793763.1| hypothetical protein SNOG_03184 [Phaeosphaeria nodorum SN15] gi|160705494|gb|EAT89915.2| hypothetical protein SNOG_03184 [Phaeosphaeria nodorum SN15] Length = 2299 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 86/238 (36%), Positives = 132/238 (55%), Gaps = 14/238 (5%) Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 K+ E+ + KS FLA VSHE+RTPL +IG SE++K + N YA+ I + Sbjct: 1809 KLKEEAAKAKSLFLANVSHELRTPLNGVIGMSELLK----ASILNSEQTGYADSIRVCAD 1864 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL--IRTSFANN 693 +L I+NDLLD SK+E+GKM++ P+SL E ++E + + Y N +R L + N Sbjct: 1865 TLLSIINDLLDYSKLEAGKMSVMEMPLSLTETITEVVRALA-YTNAERGLKTVEQLELNP 1923 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTN 750 ++ D + QI +N+LSN+ FTP G + + +E V + V DTG+G+ Sbjct: 1924 EMMVMGDPVRLHQILMNLLSNSYKFTPKGSVTVRAVIDQETDEYADVTISVIDTGIGIPA 1983 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM-GKFYIFST---PAKGTLI 804 + +K PF QI +S GTGLGL + KA+++ M GK ++ S P +GT + Sbjct: 1984 EQKKKLFLPFSQIESSSSRSYGGTGLGLSICKALIENVMHGKVWLDSRDSGPDRGTTV 2041 >gi|253580374|ref|ZP_04857640.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848467|gb|EES76431.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 985 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 106/340 (31%), Positives = 169/340 (49%), Gaps = 15/340 (4%) Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMN---HYLTEILSLDLRQTLEKITLGSTKEEK 537 V KL G VE I RK V + + V + YL EI + ++ + T E + Sbjct: 368 VEKLLGITVEQI-RKDICVLGKLHPGDVEDPEKKYLEEIQVHEQQEWDLEYVHQKTGEHR 426 Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + ++ Y L + D + ++ LS A + AE + KS FL+ +SH+IR Sbjct: 427 WFHNVAMGSEVNGKKKYILVLSDRTSDRKMNQALSEAVRAAETANKAKSTFLSNMSHDIR 486 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ AIIGF+ + + R +Y I S N +L ++ND+LD+S+IESGK++L Sbjct: 487 TPMNAIIGFTTLAVSN---IDDKERVRDYLGKILSSSNHLLSLINDILDMSRIESGKIHL 543 Query: 658 HFEPVSLDEAVSEAISLV--QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 VSL E + + +++ Q++A + + + N + D + Q+ LN+LSNA Sbjct: 544 EETEVSLSEVLHDLKTIISGQIHAKQLELYMDVMDVTN-EDVYCDKTRLNQVLLNLLSNA 602 Query: 716 IHFTPSGGQIIIST-----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 I FTP+GG + + T E +RV+D G+GM+ ++K PF + S R Sbjct: 603 IKFTPAGGTVSVRLREYPGTQRGCELYEIRVKDNGIGMSQKFVQKIFSPFERERTSTVSR 662 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +GTGLG+ + K +VD G + + KGT I PL Sbjct: 663 TQGTGLGMAITKNIVDMMGGTIEVQTEQGKGTEFIIRLPL 702 >gi|463195|gb|AAA20829.1| pectate lyase [Pseudomonas viridiflava] Length = 896 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR +Y Sbjct: 249 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQYDYLGT 304 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ + + Sbjct: 305 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 364 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 + P L+ D ++QI N++SNAI FT G + + EE + + V+DTG Sbjct: 365 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTRQGTIVARAMLEDETEEHAQLRISVQDTG 424 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 425 IGLSSQDVRALFQAFSQADNSISRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 481 >gi|320160535|ref|YP_004173759.1| putative two-component hybrid sensor and regulator [Anaerolinea thermophila UNI-1] gi|319994388|dbj|BAJ63159.1| putative two-component hybrid sensor and regulator [Anaerolinea thermophila UNI-1] Length = 1819 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/238 (35%), Positives = 131/238 (55%), Gaps = 8/238 (3%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++L+ A+ A + S KS+FLA +SHEIRTPL A+IG SE++ + PL N ++A Sbjct: 1136 DELALARDQALEASRLKSEFLATMSHEIRTPLNAVIGMSEILLDT---PL-NEEQADFAR 1191 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I SG +L I+ND+LD SKIE+G+M L L V I + +K + + Sbjct: 1192 IIRDSGKSLLSIINDILDFSKIEAGRMTLESVEFQLLPLVDSVIEMFASIVQKKNLHLFG 1251 Query: 689 SFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVR--DT 744 A ++P I + D ++Q+ +N++ N + FT G + IS EVILRV DT Sbjct: 1252 WIAPDVPNIVVGDPVRLRQVLINLVGNGVKFTEQGHVSVSISLQERLENEVILRVEVHDT 1311 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G++ ++ PF Q S R GTGLGL ++K++V+ G+ + S +G+ Sbjct: 1312 GIGLSETARKRLFTPFTQADGSMTRRFGGTGLGLAISKSLVELMGGEIGVESVEGQGS 1369 >gi|167766413|ref|ZP_02438466.1| hypothetical protein CLOSS21_00918 [Clostridium sp. SS2/1] gi|167711822|gb|EDS22401.1| hypothetical protein CLOSS21_00918 [Clostridium sp. SS2/1] Length = 804 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 88/324 (27%), Positives = 167/324 (51%), Gaps = 12/324 (3%) Query: 497 FTVFLEQNTPSVMNHYLTEILSLD----LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 FTVF+ + ++ ++ + Q + + S+++E ++ L I S Sbjct: 118 FTVFMLEGKVMFFTAFMEMVVYIATIMIAYQNPQMVVWFSSEKEVVMDLLIGFCASSISV 177 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 + +H + +++ L A+ A+ + KS FLA + HEIRTP+ ++G +E+I Sbjct: 178 AAVMYLH-FRMYNKQQEILEEARIEAQSANKAKSAFLANMGHEIRTPINVMLGMNEMILR 236 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + + +YA I+RSG ++ ++N++LDIS+IESGKM + L + + E + Sbjct: 237 ES----ESEEIRQYAKSIERSGGYLISLINNILDISRIESGKMEIEEGKYELRQLLDEVM 292 Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + + A +K + + F +P ++ D+ +KQI LN+++NA+ +T G QI I + Sbjct: 293 LIAEKQAEQKSLKMNLIFDKTLPAYLIGDVIHIKQILLNLINNAVKYTKEG-QIDIKVSK 351 Query: 732 TSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 E ++I V+DTG+G+ L F ++ + + + +GTGLGL +AK +V+ G Sbjct: 352 NEEETKLIFEVKDTGIGIKEENLPVLFDAFMRVDSKKNKKIKGTGLGLAIAKQLVEQMGG 411 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTS 814 ++ S KG+ + P+ S Sbjct: 412 MIWVESVYGKGSSFFVQLPMKKVS 435 >gi|126667179|ref|ZP_01738153.1| Signal transduction histidine kinase [Marinobacter sp. ELB17] gi|126628335|gb|EAZ98958.1| Signal transduction histidine kinase [Marinobacter sp. ELB17] Length = 969 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 86/239 (35%), Positives = 135/239 (56%), Gaps = 10/239 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL IIGF+E++ G L + ++ N Sbjct: 285 ELDFARKEALEASRIKSEFLANMSHEIRTPLNGIIGFTELLLK---GSLARQQR-DHLNT 340 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I +S ++L I+ND+LD SKIE+GK+ P L + V E + ++ A++K + + T Sbjct: 341 IRKSSEILLTIINDILDFSKIEAGKLTFDRVPFQLRDIVEEVMVMLAPAAHDKNLDLVTL 400 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVILRVR--D 743 N++P ++ D +KQI N+L+NAI FT +G ++ ++ SN V LRV D Sbjct: 401 VYNDVPNNLMGDPLRLKQIITNLLNNAIKFTHTGEVVLRASLEEEDASNGSVTLRVSVAD 460 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TG+G++ + F Q S + GTGLGL ++K + + GK + S KG+ Sbjct: 461 TGMGLSRAQQRSLFDAFSQADASTARQYGGTGLGLAISKRLAEEMGGKIGLESELGKGS 519 >gi|66046927|ref|YP_236768.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal:Hpt [Pseudomonas syringae pv. syringae B728a] gi|63257634|gb|AAY38730.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt [Pseudomonas syringae pv. syringae B728a] Length = 917 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR +Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQFDYLGT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ + + Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 + P L+ D ++QI N++SNAI FT G + + EE + + V+DTG Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|59714199|ref|YP_206974.1| two component sensory histidine kinase [Vibrio fischeri ES114] gi|59482447|gb|AAW88086.1| two component sensory histidine kinase [Vibrio fischeri ES114] Length = 864 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 136/246 (55%), Gaps = 8/246 (3%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I++ Q + KL + K+ AE + K+ FLA +SHEIRTPL IIG S V+ + P+ Sbjct: 333 IAKRHQNEKKLINEKEEAENANKAKTTFLANMSHEIRTPLNGIIGMSGVLAETKLTPIQ- 391 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 ++Y N I+ S +L ++ND+LD+SKIE+G ++ +P ++ E + + +S+ A Sbjct: 392 ---LDYLNTIETSSQTLLVLINDILDLSKIEAGNFAIYSQPSNVREVIFDTLSIDIAKAT 448 Query: 681 EKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE-- 736 EK + + + ++P L D VKQI +N+ SNA+ FT G I ++ +H E Sbjct: 449 EKNLDLHIHISPDVPNFLTLDEHRVKQILMNLTSNAMKFTHKGFISISVNFSHRVENEGY 508 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + V+D+G+G+ E + PF Q +S R GTGLGL + +++ G I S Sbjct: 509 LTIAVKDSGIGINTNAKENILNPFIQGDSSITRRFGGTGLGLTITNQLIELMGGTLDIES 568 Query: 797 TPAKGT 802 KG+ Sbjct: 569 EQEKGS 574 >gi|330974369|gb|EGH74435.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. aceris str. M302273PT] Length = 917 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR +Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQFDYLGT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ + + Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 + P L+ D ++QI N++SNAI FT G + + EE + + V+DTG Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|306843516|ref|ZP_07476117.1| histidine kinase [Brucella sp. BO1] gi|306276207|gb|EFM57907.1| histidine kinase [Brucella sp. BO1] Length = 859 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 140/254 (55%), Gaps = 4/254 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT D+++ + + L + E K+DF+ VS+E+R+PLT IIGF+E+++ F Sbjct: 599 LTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAF 658 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L N R +EY ++I S +++L IVND+LD++ +++G M L VS+ EA+S A S V Sbjct: 659 GSL-NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRV 717 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + I + A+++ AD V+Q+ N+LSNA+++ P G I++ Sbjct: 718 SERLRDHNIGLDVDIADDVDMFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVAR-DGA 776 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +V+ V D G GM + L+ K F PN + G GLGL + K+ V+ + G+ I Sbjct: 777 DVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRR--RGAGLGLAIVKSFVELHGGRVEID 834 Query: 796 STPAKGTLIEIIFP 809 + +GT + FP Sbjct: 835 TGEERGTTVICRFP 848 >gi|170025666|ref|YP_001722171.1| hybrid sensory histidine kinase BarA [Yersinia pseudotuberculosis YPIII] gi|169752200|gb|ACA69718.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis YPIII] Length = 942 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/238 (35%), Positives = 130/238 (54%), Gaps = 8/238 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ S KS+FLA +SHE+RTPL +IGF+ Q P +Y Sbjct: 277 ELGLAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFTR----QTLKTSLTPTQTDYLQT 332 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RS N +L I+ND+LD SK+E+ K+ L P SL + E I L+ A+EK + + Sbjct: 333 IQRSANNLLCIINDVLDFSKLEADKLILEHIPFSLRGTLDEVIILLAHTAHEKGLELTLH 392 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVR--DTG 745 N++P ++L D ++QI N+L NAI FT G I++ ++++V L V DTG Sbjct: 393 INNDVPDQVLGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTG 452 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G++ + + + F Q S +R GTGLGL + + +V G S + G++ Sbjct: 453 IGISESQQAQLFQAFRQADASTSLRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSI 510 >gi|332701935|ref|ZP_08422023.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552084|gb|EGJ49128.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1232 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 94/345 (27%), Positives = 170/345 (49%), Gaps = 12/345 (3%) Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 + I +G L N A S+LFGY ++++ + TP + ++ +I Q Sbjct: 727 LTITTLDGRYLDVNEAFSRLFGYSRDEVMGRRSQEIGHWLTPELRECFVRQIQRGGRVQN 786 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 +E + L L + ++ C DI+E + + ++ AK+ AE + Sbjct: 787 MEVEFRTKDGDPCTLLLSADVVRIGGKPCILTVGADITERIRMEGEMRRAKEQAEIANRA 846 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KSDFLA +SHEIRTP+ ++G ++ Q+ R EY +S + +L I+ D+ Sbjct: 847 KSDFLANMSHEIRTPMNGVMGMIDLSLMQKL----PTRVREYQIMAKKSADHLLSIIGDI 902 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRS 703 LD+SKIE+G+M L + + + V + + L A +K + + + +IP +L D Sbjct: 903 LDLSKIEAGRMELTEDIFDVRDLVEGTVRPLALTAADKGLKLLHAVDADIPPLLCGDPVR 962 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRVRDTGVGMTNYELEKAM 757 ++Q+ N++SNA+ FT G+++++ T ++ ++ V DTG+G+ +L Sbjct: 963 LRQVLANLVSNAVKFTHK-GRVLVNVERTGHDLPRDEVRLLFSVSDTGIGIPREKLSLIF 1021 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + F Q + R GTGLGL ++K +V+ G + S KG+ Sbjct: 1022 ESFSQAEEATHARYGGTGLGLAISKRLVEMMGGHIGVESVMGKGS 1066 >gi|332306726|ref|YP_004434577.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174055|gb|AEE23309.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 1115 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/257 (31%), Positives = 133/257 (51%), Gaps = 12/257 (4%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DI+E K+ + L AK AE+ +S ++ FLA +SHEIRTP+ A+IGFS+++ + F Sbjct: 511 IMDITERKEMEQSLLIAKDKAEQAASSRAAFLANMSHEIRTPMNAVIGFSDILLDDVF-- 568 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 ++ I++S +L ++ND+LD +K++ GK SL E + +S + L Sbjct: 569 --EAEQRKHLTTINQSAKSLLHLLNDILDSAKLDKGKFEFEMRDFSLIEEIDAVVSTLWL 626 Query: 678 YANEKRILIRTSFANNIPRILADLRS----VKQIALNILSNAIHFTPSGGQIIISTTHTS 733 AN+K + + S A P + ++Q+ N++ NAI FT GG + I Sbjct: 627 QANKKELYLNVSVA---PEVAGAFHGAPDRIRQVLTNLIGNAIKFTVLGG-VNIKVGVKP 682 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + + + DTG+GMT +L FGQ S R GTGLG ++K +++ GK Sbjct: 683 SGCIEFAIIDTGIGMTKEQLNLVFDAFGQADASMSRRFGGTGLGTTISKQLIELMGGKIS 742 Query: 794 IFSTPAKGTLIEIIFPL 810 ST +G+ PL Sbjct: 743 ATSTYGEGSCFSFTLPL 759 >gi|315187462|gb|EFU21218.1| integral membrane sensor hybrid histidine kinase [Spirochaeta thermophila DSM 6578] Length = 752 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 134/256 (52%), Gaps = 10/256 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D E + +L AK+ AE+ KS FLA +SHE+RTPL IIG SE++ + Sbjct: 339 DTEEIHAYQERLKEAKEEAERADRAKSAFLATMSHELRTPLNGIIGMSELLMSSGL---- 394 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + +EYA I +G +L ++ND+LD+S++ESGK+ + P L + + Sbjct: 395 SGELVEYARTIQTAGENLLALINDILDVSQLESGKLKVERRPCDLKAVLLHVYKTLYPQT 454 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 K + A+ +P ++ +D + Q+ N++ NAI FT S G++++ EE Sbjct: 455 IHKSLRFVLEVASEVPAVVVSDEARLSQVLFNLVGNAIKFT-SRGEVVLRVWMEEAEEGR 513 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 ++ +VRDTG+G+ EL + + F Q+ R +G+GLGL +A+ +V+ G+ + Sbjct: 514 AKIVFQVRDTGIGIPREELPRVFERFHQVDQGVTRRFQGSGLGLSIARDLVELMGGRIEV 573 Query: 795 FSTPAKGTLIEIIFPL 810 S KG+ + P Sbjct: 574 ESEEGKGSCFTVRIPF 589 >gi|169335265|ref|ZP_02862458.1| hypothetical protein ANASTE_01673 [Anaerofustis stercorihominis DSM 17244] gi|169258003|gb|EDS71969.1| hypothetical protein ANASTE_01673 [Anaerofustis stercorihominis DSM 17244] Length = 818 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 87/278 (31%), Positives = 153/278 (55%), Gaps = 21/278 (7%) Query: 556 LTMHDISEW--KQEKNK--LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 +T+ DI + K+E NK L A + A + + KS+FL+R+SH+IRTP+ AI G + + K Sbjct: 274 ITLRDIQDMIQKEENNKIALKEAYESAARANEAKSEFLSRMSHDIRTPMNAIFGMTSIAK 333 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 N P + +E + I S + +L+++N++LD+SKIESGK++L E ++L V +A Sbjct: 334 NNLNDP---DKILECLDKITISSDHLLNLINEVLDMSKIESGKLSLTSEKINLLHLVEDA 390 Query: 672 ISLV--QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 I+++ + + + + TS + +++D ++Q+ LNILSN++ +TP GG I + Sbjct: 391 ITIISPDISKKHQNLSLDTSGVTH-SDVISDSLRLRQVFLNILSNSMKYTPEGGNIELKV 449 Query: 730 THTSNE-------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 + E I +D G+GM + K PF + +S+ + GTGLG+ + K Sbjct: 450 NEVKSTLEGYGRYEFIF--KDDGIGMNEEFINKIFAPFERADDSRINKVHGTGLGMAITK 507 Query: 783 AMVDANMGKFYIFSTPAKGTLIEII--FPLYDTSHPHD 818 ++VD G + S +G+ +I L D S ++ Sbjct: 508 SIVDLMSGDIVVESKKGRGSKFTVIVNMKLQDASEIYN 545 >gi|330941410|gb|EGH44230.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. pisi str. 1704B] Length = 917 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR +Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQFDYLGT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ + + Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 + P L+ D ++QI N++SNAI FT G + + EE + + V+DTG Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|291287080|ref|YP_003503896.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] gi|290884240|gb|ADD67940.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] Length = 1322 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 104/372 (27%), Positives = 187/372 (50%), Gaps = 30/372 (8%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFTVFLE 502 ++K E E+ +L ++E + I I + +G I N A K+ GY +E+ L K P + + Sbjct: 578 RKKAEEELKKLALVMEQNPNSIVITDIDGNIEFVNPAFEKITGYSLEEALGKNPNVLKTD 637 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562 P+V + + +T G + ++ + + + + M+D Sbjct: 638 HTEPAV------------FEELWKTVTKGEVWNGEFVNKKKNGELYIEHAIIAPIMNDRG 685 Query: 563 E------WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 E K+ +L A+ AE+ + KS FLA +SHEIRTPL ++GF E++K+ Sbjct: 686 EIVNYLGMKENITELKQARAKAEESNRAKSMFLANMSHEIRTPLNGLMGFLELLKHT--- 742 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + + EY + I S + +L I+ND+LD+SKIESG M++ ++L + + Sbjct: 743 PLDSEQ-AEYLSTIKFSADTLLKILNDILDLSKIESGMMDIESSEMNLGFQILSTVKAFY 801 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A+ K + + + +P +L D + Q+ N+L+NA+ FT +GG I ++ NE Sbjct: 802 AKASAKGVRLYSYIDPQVPSSLLGDALRISQVVSNLLNNAVKFTHAGGVIKVN-VELKNE 860 Query: 736 -----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 V++ V DTGVG+ + +++ +PF Q+ +S + GTGLGL +++ ++ Sbjct: 861 TKKTATVLIAVEDTGVGIPDGKIKSVFEPFAQVDSSVTRKYGGTGLGLTISRNLLKLMKS 920 Query: 791 KFYIFSTPAKGT 802 + S KG+ Sbjct: 921 DIELKSEKGKGS 932 >gi|190889670|ref|YP_001976212.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652] gi|190694949|gb|ACE89034.1| probable two-component sensor histidine kinase protein [Rhizobium etli CIAT 652] Length = 861 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 112/410 (27%), Positives = 194/410 (47%), Gaps = 35/410 (8%) Query: 424 FPENMPQNG--------IEPEDVDTRINKR-KMEIEVMQLCSILEATSDGIAIINREGII 474 F PQ G E D++TR N K++ E ++ S+G+A+ +G I Sbjct: 464 FATAHPQGGATWVFENLTEQVDLETRYNTLVKVQGET------IDHLSEGVAVFGPDGRI 517 Query: 475 LSTNRAVSKLFGYPVEDILRKPFT---VFLEQNTPSV-----MNHYLTEILSLDLRQTLE 526 +N A L+G + + KP T E PS + I S D + Sbjct: 518 RLSNPAFRALWG--ITEAEAKPGTHIRALGEACAPSYDRPDGWKTFAELITSFDDERRSG 575 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 + TL E L + +P + + LT ++++ + + L+ + K K Sbjct: 576 QGTL-----ELFSGLVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELK 630 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 +DF+ VS+E+R+PLT IIGF+++++ Q GPL N R EY ++I S +++L +VND+L Sbjct: 631 NDFVQHVSYELRSPLTNIIGFTDLLRTQGVGPL-NERQAEYIDHISTSSSVLLTLVNDIL 689 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705 D++ +++G M L++ + L++ + + + E +++ + + I+AD + +K Sbjct: 690 DLATVDAGIMRLNYAEIDLNDLLDDVSMQIADRLQESGVVLEITAPAYLGSIVADPQRLK 749 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 QI L +LSNA +F+P G I + + + VRD G G++ + F Sbjct: 750 QILLKLLSNAANFSPEGSSISLECRREGT-DFVFSVRDRGPGISPDMIATVFDRFATGAK 808 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 S + RG G GLGL + + V + G I S P KGT + P + H Sbjct: 809 SGK-RG-GAGLGLSIVDSFVSLHHGDVTIDSEPGKGTTVVCRIPSVNIPH 856 >gi|298491856|ref|YP_003722033.1| integral membrane sensor signal transduction histidine kinase ['Nostoc azollae' 0708] gi|298233774|gb|ADI64910.1| integral membrane sensor signal transduction histidine kinase ['Nostoc azollae' 0708] Length = 684 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/259 (32%), Positives = 143/259 (55%), Gaps = 12/259 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + W +E L A K A+ + KS FLA SHE+R PL II ++++ L + Sbjct: 364 LKAWAEE---LEIAWKEAKSANFVKSQFLATTSHELRNPLNIIINCVRLVRD----GLCD 416 Query: 621 PR--YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 R +E+ D + +L I+NDLLDISKIE+GK+++ P+ L + + + I+L + Sbjct: 417 DREEELEFLQRADETAIHLLGIINDLLDISKIEAGKISVITTPLELRKLLLDVINLQSVN 476 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEE 736 +K + ++ + N + + AD +KQ+ +NI+ N+ FT G +I + H S+ Sbjct: 477 VQQKGLQLKCAIGNELIPVRADELKLKQVLINIIGNSTKFTDKGSIVISTDIHHNNSSSH 536 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 VI+ V+DTG+G+ + +K +PF + + + EGTGLGL +++ +++ GK + S Sbjct: 537 VIISVKDTGIGIDPGQQDKLFRPFVMVDGTTTRKFEGTGLGLAISRNLIELMGGKITLES 596 Query: 797 TPA-KGTLIEIIFPLYDTS 814 GT ++II PL D S Sbjct: 597 LGLHHGTTVKIILPLIDIS 615 >gi|188580981|ref|YP_001924426.1| multi-sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179344479|gb|ACB79891.1| multi-sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 1120 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 130/235 (55%), Gaps = 12/235 (5%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE+ S+ KS+FLA +SHEIRTPL I+G+++++ ++ P +P I SG ++ Sbjct: 583 AERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDR---PERDPEDQRRLELIRVSGEVL 639 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696 L +VND+LD+SKIE+G++ L P +L + + + +++++ A + + + N+P Sbjct: 640 LTVVNDVLDVSKIEAGQLALDPLPFALGKLIEDTVAIIRGSALKSALTVEARIDRNLPAS 699 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--------NEEVILRVRDTGVGM 748 ++ D ++Q+ N+L+NA+ FTP+G + S E + +RDTG+G+ Sbjct: 700 VIGDANRLRQVLFNLLNNAVKFTPAGSVTLTVRYEGSVRDAEGGRREALRFEIRDTGIGI 759 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 + + KPF Q+ S R G+GLGL + + +V G + S G++ Sbjct: 760 APSQQHRLFKPFSQVDGSISRRFGGSGLGLAICQRLVTMMGGAIGVESVEGVGSI 814 >gi|17231597|ref|NP_488145.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] gi|17133240|dbj|BAB75804.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] Length = 550 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 85/256 (33%), Positives = 138/256 (53%), Gaps = 11/256 (4%) Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN-PR 622 W +E + A K A+ + KS FLA SHE+R PL II ++K+ G N Sbjct: 231 WSEE---IETAWKDAKSANQVKSQFLATTSHELRNPLNIIINCVRLVKD---GLCDNREE 284 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 IE+ D + +L I+N+LLDISKIE+GK+++ +P+ L + + E I+L + +K Sbjct: 285 EIEFLQRADETAIHLLGIINELLDISKIEAGKLSVVSQPLDLRQTLLEVINLQSVNVQQK 344 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVIL 739 + ++T+ + AD +KQ+ +NI+ NA FT GG I +T T E +V++ Sbjct: 345 GLQLKTNLGTEPIPVKADAAKLKQVLINIIGNATKFTDEGGISIATTIQTRIEGKSQVMV 404 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 + DTG+G+ + K +PF + S + EGTGLGL +++ +++ G + S Sbjct: 405 SITDTGLGIEPAQQHKLFRPFVMVNGSTTRKFEGTGLGLAISRNLIELMGGTITLESAGI 464 Query: 800 -KGTLIEIIFPLYDTS 814 +GT + I PL D S Sbjct: 465 NQGTTVNITLPLIDIS 480 >gi|289675169|ref|ZP_06496059.1| PAS [Pseudomonas syringae pv. syringae FF5] Length = 500 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 85/263 (32%), Positives = 138/263 (52%), Gaps = 10/263 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ--RFGP 617 DI+E KQ + +L A ++A++ + KS FLA +SHEIRTP+ AIIG E+ Q R G Sbjct: 162 DITERKQLEQQLQEAMRLADQANEAKSAFLASMSHEIRTPMGAIIGLLELECEQALRLGK 221 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + + + ++ A+ RS ++ ++ + LD+++IE+G M L SL I L Sbjct: 222 IPS-QGLQVAH---RSATELIALIGESLDLARIEAGGMQLSLAVTSLQGLFDGVIELFSA 277 Query: 678 YANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNE 735 A EK + +R F+ D ++Q+ N+L NA+ FT G ++ + TH S E Sbjct: 278 QAGEKGVELRLEFSGQARGDYWLDPFRLRQVLHNVLGNALKFTRQGAVVVTLDVTHDSPE 337 Query: 736 EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +R ++D+G G+ ++ +PF Q + G+GLGL + + +V+ G Sbjct: 338 STRVRIGIQDSGEGIDPQRQQQVFQPFTQASDDTAAHYGGSGLGLSITRQLVELMKGDIS 397 Query: 794 IFSTPAKGTLIEIIFPLYDTSHP 816 + S P KGTL+ I PL S P Sbjct: 398 LHSEPGKGTLVTIDLPLTRVSEP 420 >gi|296104455|ref|YP_003614601.1| hybrid sensory histidine kinase BarA [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058914|gb|ADF63652.1| hybrid sensory histidine kinase BarA [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 919 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + NP ++ + Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSEL----NPTQRDHLHT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 N++P ++ D ++Q+ N++ NAI FT SG I++ SN +V + V RDTG Sbjct: 394 IKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRAISNNKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGS 510 >gi|325104428|ref|YP_004274082.1| PAS/PAC sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] gi|324973276|gb|ADY52260.1| PAS/PAC sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] Length = 641 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 106/375 (28%), Positives = 187/375 (49%), Gaps = 25/375 (6%) Query: 441 RINKRKMEIE-----VMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILR 494 R+ K ++EI+ + + I+ + D I +++ R +I N ++ K+ G+ ED+L Sbjct: 123 RLAKAQLEIKHKNAALERYAVIIANSVDIICVVDERTKLIEELNPSIEKILGFKKEDVLE 182 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLD--LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 +P + +N + + E+L LD +T E L + E R+ K + Sbjct: 183 RPIYSLVPKNR---LEDFREELLKLDHEKERTFEFQLLNNKGELVWTECRVTFSKKKY-- 237 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 +S++ H + KQ + +L H+K+ A + + K FLA +SHE+RTPL IIG + ++K Sbjct: 238 FFSISNHTLQ--KQYEEQLIHSKEDAIQARNVKETFLANMSHELRTPLNGIIGIANLLKQ 295 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + ++ S +L +VND+LD+SKI++GK L + V++ + +I Sbjct: 296 TELEEAQK----QMVKLLEVSSQSLLGVVNDILDLSKIDAGKFVLSKKEVNIYHILKSSI 351 Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 L++ ANEK + + +P+ I D + QI +N++SNAI FT G + + Sbjct: 352 ELMRTKANEKLLDLNLEIDPRLPKYIETDPLRLNQILMNLISNAIKFTEK-GYVSLRVNQ 410 Query: 732 TSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 S+E V V+DTG+G+ K + + Q + ++ GTGLGL + K +V+ Sbjct: 411 LSHEGDYITVKFEVKDTGIGIQPERKAKIFESYEQADDDTSLKYGGTGLGLGIVKKLVEL 470 Query: 788 NMGKFYIFSTPAKGT 802 GK S KG+ Sbjct: 471 QNGKIDFNSEYGKGS 485 >gi|160936746|ref|ZP_02084113.1| hypothetical protein CLOBOL_01637 [Clostridium bolteae ATCC BAA-613] gi|158440537|gb|EDP18282.1| hypothetical protein CLOBOL_01637 [Clostridium bolteae ATCC BAA-613] Length = 1070 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/244 (34%), Positives = 144/244 (59%), Gaps = 11/244 (4%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 ++K L A + A+ + KSDFL+R+SH++RTPL AI G + +IK+ + P R ++ Sbjct: 541 EQKTALQDALEAAKHANRAKSDFLSRMSHDLRTPLNAIQGMARIIKSHVYDP---ERVLD 597 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + I S +L++ ++N++LD SK+ESG+M L E V+L E V +++VQ EK + Sbjct: 598 STDKIMLSNDLLISLINEVLDTSKVESGQMLLAEEEVNLAELVQGVVNMVQPQLGEKNLR 657 Query: 686 IRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--- 740 +T +AN I +++DL+ ++Q+ LN+LSNA+ +TP GG I + +E+ + Sbjct: 658 FKT-YANRITHETVVSDLQRLQQLLLNLLSNAVKYTPEGGSITLEINEKPSEQTDMAYYE 716 Query: 741 --VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG+GM L + +PF + +++ +GTGLG+ + K + + G + ST Sbjct: 717 FVVSDTGIGMKPEFLARVFEPFERADDAKIQAVQGTGLGMSICKKIAELMGGTIEVESTY 776 Query: 799 AKGT 802 KG+ Sbjct: 777 GKGS 780 >gi|288555913|ref|YP_003427848.1| Hybrid signal transduction histidine kinase PAS/PAC [Bacillus pseudofirmus OF4] gi|288547073|gb|ADC50956.1| Hybrid signal transduction histidine kinase PAS/PAC [Bacillus pseudofirmus OF4] Length = 960 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 99/367 (26%), Positives = 189/367 (51%), Gaps = 30/367 (8%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ------NTPSVMN 510 I++ ++ I ++ EG +L N++ +L + L+ PF+++ + +V + Sbjct: 462 IIDNVNEAIQFVDNEGHLLQFNQSFCQLIECEQKAQLKAPFSMWFQALEHVVGGNEAVAS 521 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKN 569 Y E L D L TK++++ + ++ ++ +H DI++ + + Sbjct: 522 FY-NEALKQDNSSVLSMNYEIHTKQKRIFKVYAEPVYHGYNKVGTIFVHRDITKQHEVEQ 580 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 KS+ ++ VSHE+RTPL++I+GF+E++ +++ P +Y++ Sbjct: 581 M--------------KSELVSTVSHELRTPLSSILGFTELMLHRKLKPEKQEKYLK---T 623 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I + N + +++ND LD+ ++ESG E + + + +SE ++ + Y+ EK L + Sbjct: 624 IHKEANRLTNLINDFLDLQRMESGGQMYTNESLDIRDLISEVLTRFEAYS-EKHTLHFIN 682 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVGM 748 A I D ++Q+ NI+SNAI F+P+GG I+TT SN + + V+D G+G+ Sbjct: 683 LAEKTI-IQGDSERIQQVITNIISNAIKFSPNGGD--ITTTLASNSTSLFVSVKDDGLGI 739 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 E++ + F +I NS + + GTGLGLP+ K +V+A+ G + S +G+ I Sbjct: 740 PENEMKNLFRKFYRIDNSDRKKIGGTGLGLPICKEIVEAHNGTISVESKENEGSTFIIEL 799 Query: 809 PLYDTSH 815 PL D S Sbjct: 800 PLNDCSQ 806 >gi|147920929|ref|YP_685264.1| putative signal transduction histidine kinase [uncultured methanogenic archaeon RC-I] gi|110620660|emb|CAJ35938.1| putative signal transduction histidine kinase [uncultured methanogenic archaeon RC-I] Length = 534 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 133/247 (53%), Gaps = 2/247 (0%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E Q K++L + + + K +F +SHE+RTPLT I G++E++K+ GP+ N Sbjct: 286 ELSQAKSELEISYERLKSLDRMKMEFFTLISHELRTPLTTIKGYAELLKDGTLGPV-NDE 344 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + + ID S + + IV L D+S + S + PVSL+E + E + + A+ K Sbjct: 345 QRDRLSRIDASVDRLTGIVESLSDLSGVASRQYAGEKIPVSLNELIEEVVRGIDFLADLK 404 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 ++ I +P I AD ++Q+ LN+L+NAI +TP GGQI IS + +++ VR Sbjct: 405 KLKITLDVPLTLPMISADRSRIQQVLLNVLNNAIKYTPDGGQISISVRDECD-HLLIAVR 463 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ ++E F +G GLGL +++ +V+++ GK + S P KG+ Sbjct: 464 DTGIGIPKEDIENIFSGFYHSGYKLSYEYKGAGLGLAISRKIVESHGGKIWADSEPGKGS 523 Query: 803 LIEIIFP 809 I P Sbjct: 524 TFFISLP 530 >gi|223983989|ref|ZP_03634147.1| hypothetical protein HOLDEFILI_01437 [Holdemania filiformis DSM 12042] gi|223964065|gb|EEF68419.1| hypothetical protein HOLDEFILI_01437 [Holdemania filiformis DSM 12042] Length = 853 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 138/257 (53%), Gaps = 19/257 (7%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++++ L A + A S+ KS FL+ +SH+IRTP+ AI+G + + L +P + Sbjct: 581 ERQQEILKTALENATAASAAKSQFLSNMSHDIRTPMNAIVGMTAIAG----AHLNDPERV 636 Query: 625 EYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + I S +L ++ND+LD+SKIESGK+ + EP + E ++E + LV+ A EK Sbjct: 637 QACLRKISLSSKHLLSLINDILDMSKIESGKLTIAQEPFNFAELITEVVELVRPQAEEKN 696 Query: 684 ILIRTSFANNIPR-----ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---- 734 + F R ++ D ++Q+ +NILSNA+ +TP GG I + + S+ Sbjct: 697 QI----FEFQPERLEKEGVVGDPLRIRQVCINILSNAVKYTPEGGTITLEISQRSSLYKG 752 Query: 735 -EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + + R DTG+GM + + +PF + + Q GTGLG+ + K +VD G+ Sbjct: 753 CQNFVFRCADTGIGMEPEFMTRLFQPFERSDHPQARNENGTGLGMAITKNLVDLMNGEIQ 812 Query: 794 IFSTPAKGTLIEIIFPL 810 + ST +G++ +I P Sbjct: 813 VTSTAGQGSVFTVILPF 829 >gi|186682598|ref|YP_001865794.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465050|gb|ACC80851.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 657 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 105/377 (27%), Positives = 178/377 (47%), Gaps = 30/377 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S ++ DG+ +++ +GIIL N A++++F P +IL + Sbjct: 142 STFDSIKDGVCLVDTKGIILRCNLAITQIFCKPSHEILGCAHHNLMAAELGIGDGTCFRR 201 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK------QEKN 569 RQ LE ST+ ++ ++ + + + DI+E K QE+N Sbjct: 202 AKETHQRQVLE---FQSTERWFAKTIDPVLDEHGTLTGAVFILSDITERKRASALLQEQN 258 Query: 570 --------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 L + A++ + K +FLA +SHE+R+PL I+G++++++ R + Sbjct: 259 DRLNQLMISLQQQTEQAQQANRIKDEFLAVLSHELRSPLNPILGWAKILQTSR----QDA 314 Query: 622 RYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 +YA I+R+ L ++ DLLD+S+I GK++L+ PV L + A+ V+L A Sbjct: 315 AKTQYALETIERNAKLQAQLIEDLLDVSRILQGKLSLNTVPVGLTFTIKAALETVRLAAE 374 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN------ 734 K I I+T F N ++L D ++Q+ N+LSNAI FTP GGQ+ + N Sbjct: 375 AKSIQIQTIFEPNAGQVLGDSGRLQQVVWNLLSNAIKFTPQGGQVEVRLERIENELDTHP 434 Query: 735 -EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E + V DTG+G++ L F Q + R G GLGL + + +V+ + G Sbjct: 435 SEYTQISVSDTGMGISADFLPYVFDYFRQADGTTTRRFGGLGLGLAIVRHLVELHGGSIQ 494 Query: 794 IFS-TPAKGTLIEIIFP 809 S +G + FP Sbjct: 495 AASPGEGQGATFTVKFP 511 >gi|332992705|gb|AEF02760.1| sensory box histidine kinase/response regulator [Alteromonas sp. SN2] Length = 929 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 124/221 (56%), Gaps = 7/221 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLAR+SHEIRTP+ AI+G +++ + + N + I++S +L ++ND+ Sbjct: 419 KSEFLARMSHEIRTPVNAIVGLTKLTQK----SVVNEEQKTNLSQIEQSSQTLLGVINDV 474 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703 LD SKIE+GK+N+ E LD+ V + I L + A EKRI + A ++P ++ D Sbjct: 475 LDFSKIEAGKLNIESEVFELDKLVEQVIRLHGINAKEKRIELLQYVARDVPLQVSGDALR 534 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFG 761 ++Q+ N+LSNAI FT G + S V+L V+DTG+G++ ++E F Sbjct: 535 IEQVLNNLLSNAIKFTDEGMVFVSVNKKYSEHGVLLEFSVKDTGIGLSTNQIESLFDAFT 594 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 Q S + GTGLGL + K +V G+ ++ S +G Sbjct: 595 QADESITRKYGGTGLGLSICKHLVSLMGGEIWVESKLGQGA 635 >gi|114570768|ref|YP_757448.1| PAS/PAC sensor hybrid histidine kinase [Maricaulis maris MCS10] gi|114341230|gb|ABI66510.1| PAS/PAC sensor hybrid histidine kinase [Maricaulis maris MCS10] Length = 1070 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/252 (32%), Positives = 133/252 (52%), Gaps = 6/252 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S ++ L A++ AE S KS FLA +SHEIRTPL ++G ++V+ Sbjct: 664 DVSADIEQAAALELARERAESASYAKSQFLANMSHEIRTPLNGVLGMTQVLHMTELTEQ- 722 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R++E I SG + D+++D+LDISKIESG + L + E V+ + +L A Sbjct: 723 QSRHVET---IRSSGQALADLIDDILDISKIESGMIELEQRAFEMPELVAMVSDITRLRA 779 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 EK++ + S A ++ + ++ D + ++QI +NI+ NA+ FT S G++ I + + V Sbjct: 780 QEKQLALDMSLAPDVAKVVVGDEKRLRQILINIVGNAVKFTDS-GRVSIDIRAGAEDVVE 838 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 R+ DTG G+ L F Q NS + GTGLGL + +V G+ + S P Sbjct: 839 FRISDTGPGIEPDHLASIFDRFAQADNSITRQYGGTGLGLAICHELVTLMGGEIGVESVP 898 Query: 799 AKGTLIEIIFPL 810 +G+ PL Sbjct: 899 GEGSTFWFKLPL 910 >gi|152988773|ref|YP_001347467.1| virulence sensor protein BvgS [Pseudomonas aeruginosa PA7] gi|150963931|gb|ABR85956.1| virulence sensor protein BvgS [Pseudomonas aeruginosa PA7] Length = 691 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 88/253 (34%), Positives = 138/253 (54%), Gaps = 12/253 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E ++ +L A + A++ + KS FLA +SHEIRTP+ A+IG E++ QR P G Sbjct: 173 DITERERLARQLREAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILELVL-QRLTP-G 230 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P + +G+L L ++ D+LD++KIESG + L E V L E V + + A Sbjct: 231 QPERASLEVAYEAAGSLQL-LIGDILDVAKIESGHLILTPERVRLREVVESVRRMFEGLA 289 Query: 680 NEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736 +K + + + P +L D KQ+ N++SNAI FT GQ+ I + +E Sbjct: 290 RQKGLRLGVELGDT-PGCDVLIDPLRFKQVLSNLVSNAIKFTEQ-GQVTIRLQEKNLDEG 347 Query: 737 ---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 V L V DTG+G+ + + +PF Q+ + ++G GTGLGL + + +VD G Sbjct: 348 RAVVRLAVEDTGIGIAPADQARLFQPFIQVAKGRTVQG-GTGLGLAICRKLVDLMGGDIE 406 Query: 794 IFSTPAKGTLIEI 806 + S P KGTL+ + Sbjct: 407 MHSEPGKGTLVSL 419 >gi|256827996|ref|YP_003156724.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577172|gb|ACU88308.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 837 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 135/248 (54%), Gaps = 9/248 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S+ K+ + ++ A+ +AE + KS+FLA +SHEIRTPL ++G ++++ + P+ Sbjct: 427 DLSDRKRAEEEILRARDLAEAANCAKSEFLANMSHEIRTPLNGVMGMLQLLQLTKLDPVQ 486 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +Y + +S N ++ ++ D+LD+S+IE+GK+++ P+ L E + + L A Sbjct: 487 E----DYTDTAIQSCNRLVRLLTDILDLSRIEAGKLSIQSAPMELSEVLRQTGDLFSPTA 542 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII----ISTTHTSN 734 EK + +R IP +IL D ++Q+ N++ N++ FT SGG + + + H Sbjct: 543 REKGLKLRFDVDPAIPSQILGDATRLQQVLSNMVGNSLKFTHSGGVTVDASLLPSVHGGQ 602 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V+ V DTG+G+ + +L +PF Q+ +G GLGL + K +V G + Sbjct: 603 CRVLFSVADTGIGIPDDKLGNLFQPFSQVTEGFTRSYQGAGLGLSICKRLVSFMGGNISV 662 Query: 795 FSTPAKGT 802 S GT Sbjct: 663 VSELEVGT 670 >gi|172036053|ref|YP_001802554.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171697507|gb|ACB50488.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 1084 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 89/259 (34%), Positives = 144/259 (55%), Gaps = 16/259 (6%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK AE + KSDFLA +SHE+RTPL AI+GFS+++ N + EY + I Sbjct: 604 LETAKNTAESANRAKSDFLAHMSHELRTPLNAILGFSQLLNNDENL---DEEQKEYIDII 660 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 ++SG +L ++ +LD++KIE+G++NL ++P++L + V + +L A K I + Sbjct: 661 NQSGEHLLTLIKSVLDMAKIEAGEINLDYQPLNLHQLVKNLSGMFKLKAQCKNIDLTVDI 720 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILR--V 741 N++P I+ D ++Q+ +N+L+NAI FT G++I+S + ++ + LR + Sbjct: 721 GNDVPSLIMGDEGKLRQVLINLLNNAIKFTEE-GKVILSIKKSQQQQEKSSQIIPLRFEI 779 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK- 800 DTG G+ E + +PF Q Q+ + EGTGLGL ++ V MG S P K Sbjct: 780 EDTGPGIDIEEAPRLFQPFFQTKLGQKTQ-EGTGLGLTISYEFVHL-MGGTLQVSCPIKG 837 Query: 801 GTLIEIIFPLYDTSHPHDC 819 GT+ P+ + DC Sbjct: 838 GTIFYFTLPVNIPKNYSDC 856 >gi|156741101|ref|YP_001431230.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156232429|gb|ABU57212.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 1042 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 103/364 (28%), Positives = 187/364 (51%), Gaps = 17/364 (4%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L +IL+A+S+ IA++ +G L+ NR +FG P + +L + + + + + Sbjct: 668 ELRAILDASSEVIALLAPDGAFLTVNRRFCDIFGVPADQVLGRRLI-----DMRAEIRWF 722 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK-L 571 + + R E+++ LR ++L S T + + + + + Sbjct: 723 FGDADEVYERMLSALQDAQDVFREQVVQLRPQHRELAIFSAPVWTANQVHLGRLYVFRDV 782 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 +H + + KS+F+A VSHE+RTPLT+I G+ +++ + GPL + E + Sbjct: 783 THERAV----ERMKSEFVAMVSHELRTPLTSIKGYIDMLLDGDAGPLAV-EHQELLQIVK 837 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV--QLYANEKRI---LI 686 + + +L ++NDLLD+S+IE+GK+ LH P+ + + + + + QL A +R+ L Sbjct: 838 SNADRLLLLINDLLDMSRIEAGKLMLHRAPLDVRPLIRQVATALRPQLDAKHQRLNLDLS 897 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T + P + D V QI N+LSNAI +TP GG+I + + + + V+DTG+ Sbjct: 898 ETPPDDAPPLMFGDAARVHQILTNVLSNAIKYTPQGGEISVRLS-VEPPWMCIAVQDTGI 956 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+T E E+ F ++ N GTGLGL + +++VD + G+ + S +G+ I Sbjct: 957 GLTPEEQERIFDRFYRVRNRATREASGTGLGLAITRSLVDLHQGRITVESEAGRGSTFRI 1016 Query: 807 IFPL 810 FPL Sbjct: 1017 CFPL 1020 >gi|75910179|ref|YP_324475.1| Cache sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75703904|gb|ABA23580.1| Cache sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 811 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/244 (32%), Positives = 137/244 (56%), Gaps = 12/244 (4%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 E+ +L +K+ A+ + KS+FLA +SHE+RTPL I+G +++++ P +I Sbjct: 323 EQAQLKKSKEAADLANHAKSEFLANMSHELRTPLNGILGCAQILQRSSKLPEQEQHHI-- 380 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 N I++ G+ +L ++ND+LD++KIE+ K+ LH E V + + Q+ A +K IL Sbjct: 381 -NIIEQCGSHLLTLINDILDLAKIEAKKLELHGEDVHFPSFIQGIAEICQIRAAQKDILF 439 Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS------NEEVI 738 A+N+P + D + ++Q+ LN+L NAI FT G ++ + T S N + Sbjct: 440 IYEPASNLPTWVHIDAKRLRQVLLNLLGNAIKFTDHGQVKLKVETIEESSNQKPVNHRIR 499 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + DTG+G+T+ EL K PF Q+ ++ + EGTGLGL + + +V ++ S Sbjct: 500 YCIEDTGIGITDAELSKIFLPFEQVGEKKR-QTEGTGLGLAITRQLVQMMGSDIHVTSQV 558 Query: 799 AKGT 802 KG+ Sbjct: 559 GKGS 562 >gi|330966578|gb|EGH66838.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. actinidiae str. M302091] Length = 917 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR +Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQFDYLAT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ + + Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 + P L+ D ++QI N++SNAI FT G + + EE + + V+DTG Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|220934271|ref|YP_002513170.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio sp. HL-EbGR7] gi|219995581|gb|ACL72183.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio sp. HL-EbGR7] Length = 915 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/255 (30%), Positives = 143/255 (56%), Gaps = 8/255 (3%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q+ +L+ A+ AE+ + KS LA +SHE+RTPL+AI G++E++ +++G L + R + Sbjct: 269 QKNRELTLARGKAEEANQRKSQLLASISHELRTPLSAIQGYAELL--EQYGDLDD-RDLG 325 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + I+ S L +VNDLLD++++ESG++ +H L + +SE I + + ++++ Sbjct: 326 WLEIINTSSKDTLKLVNDLLDVARLESGRITIHRSQFQLGKCLSEVIGICRRSLRDRQVD 385 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---HTSNEEVILRV 741 + + P I +D KQ+ N+LSNA+ FT + GQ+ + + ++ + V Sbjct: 386 VTLIMSPETPASITSDHLRFKQVITNLLSNALKFT-ANGQVNVHASVRQEGRTRQLEICV 444 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RD G G+ +L +PF Q + + R G GLGL + + + + G+ + S P G Sbjct: 445 RDFGPGIEPDDLPHIFEPFFQSRHPEVRRHSGAGLGLNITRGITELLGGQILVDSAPGTG 504 Query: 802 TLIEIIFPLYDTSHP 816 +L ++ PLYD+ P Sbjct: 505 SLFTLLLPLYDSDVP 519 >gi|330877094|gb|EGH11243.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 917 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR +Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQFDYLAT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ + + Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 + P L+ D ++QI N++SNAI FT G + + EE + + V+DTG Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|197106180|ref|YP_002131557.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] gi|196479600|gb|ACG79128.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] Length = 588 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/235 (34%), Positives = 127/235 (54%), Gaps = 9/235 (3%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A S KS FLA +SHEIRTPL ++G +V++ R G R ++ I S + Sbjct: 195 AVAASRAKSAFLATMSHEIRTPLNGVLGMVQVMERGRLGV----RQRQHLAVIRESAGAL 250 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS-LVQLYANEKRILIRTSFAN-NIP 695 + ++ND+LDISKIE GK+ LH +P L A +E I L + A E+ + R S + Sbjct: 251 MKVLNDVLDISKIEVGKLELHAQPFELG-AFAEGIGRLYAVLAEERGLSFRLSVEDAGHG 309 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 R++ D ++QI N+LSNA+ FTP G ++++S + + VRDTG+G+ + Sbjct: 310 RLIGDEARLRQIVSNLLSNAVKFTPEG-EVVVSFA-ADDRSLTCAVRDTGIGIPAAQQAV 367 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F Q+ + EGTGLGL + + +V+ G+ + STP +G+ PL Sbjct: 368 IFDKFTQVDDGAARSFEGTGLGLAICRDLVELMGGEILVASTPGEGSTFTFRVPL 422 >gi|77465058|ref|YP_354561.1| DMSO/TMAO-sensor hybrid histidine kinase [Rhodobacter sphaeroides 2.4.1] gi|77389476|gb|ABA80660.1| DMSO/TMAO-sensor hybrid histidine kinase [Rhodobacter sphaeroides 2.4.1] Length = 813 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 135/250 (54%), Gaps = 17/250 (6%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +T HD++E ++ A++ AE + K+DFLA +SHEIRTP+ +I G +E++K Sbjct: 293 VTFHDVTEARR-------AREQAEALARAKTDFLATMSHEIRTPIHSIGGVTELLKQSEL 345 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 R Y + I+RS ++ IV+D+LD ++IESG + L S+D+ + + ++ Sbjct: 346 AS----RDRGYVDAIERSTEVLASIVSDVLDYARIESGLVELEQVDFSIDQILDDVARMM 401 Query: 676 QLYANEK---RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 Q K RI+I + ++P +L D ++QI +N+ SNA+ FTP G +I + Sbjct: 402 QPLVRRKPQLRIVIERT---DLPPVLGDAGKLRQILINLTSNAVKFTPEGTVVIGAERLA 458 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 V DTG G+ +LE+ KP+ Q +S R GTGLGL + + + G+ Sbjct: 459 GGHRFRFTVSDTGPGIAAEKLEEIFKPYIQSDSSISRRHGGTGLGLAICRRLAGHLGGRL 518 Query: 793 YIFSTPAKGT 802 + STP G+ Sbjct: 519 DVRSTPGFGS 528 >gi|291568909|dbj|BAI91181.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 933 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 142/253 (56%), Gaps = 18/253 (7%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS+ KQ + +L AK++AE + K+ FL +SHE+RTPL AI+GF++++ +G Sbjct: 429 DISDRKQAEEELVRAKEVAEAANQAKTTFLTNMSHELRTPLNAILGFTQLLN---YGDNL 485 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N I RSG +L ++ND+LD+SKIE+G++ + + L + E L L A Sbjct: 486 TEHQHNNLNIIQRSGEHLLSLINDILDLSKIEAGRVTVSDDDFDLWRMLDEIKDLFSLKA 545 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNE 735 ++K + + ++ ++PR I D ++QI +N++ NAI FT G+++I+ H +S+ Sbjct: 546 SQKNLYLDCVYSPDLPRYIRGDRLKLRQIMINLIGNAIKFTEQ-GRVVITADHKFISSSP 604 Query: 736 EVI---LRVRDTGVGMTNYELEKAMKPFGQIP---NSQQIRGEGTGLGLPLAKAMVDANM 789 + + V D+GVGMT E+ + +PF Q +SQ EGTGLGL + + + Sbjct: 605 PICCLQIAVTDSGVGMTPEEIAQLYEPFFQAQAGIDSQ----EGTGLGLTICQKYLQLMG 660 Query: 790 GKFYIFSTPAKGT 802 + + S GT Sbjct: 661 AEIEVISEVGHGT 673 >gi|297569303|ref|YP_003690647.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296925218|gb|ADH86028.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 1295 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/260 (30%), Positives = 146/260 (56%), Gaps = 15/260 (5%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ + +L + E +KS+FLA +SHE+RTPL +I+ S+++ + G L PR Sbjct: 549 ELQKARQELEEKARALEISGRYKSEFLANMSHELRTPLNSILILSQMLATNKQGNL-LPR 607 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +EYA I+ SG+ +L+++N++LD+SKIE+G+M+++ E V+L + + + A EK Sbjct: 608 QLEYATTINNSGSDLLNLINEVLDLSKIEAGRMDINPETVNLKALLDSLLHPFRPLAEEK 667 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----- 736 ++ + A+++P I +D + QI N+LSNA+ FT G++ I+ N++ Sbjct: 668 QLTLVGELADDLPVTIYSDETRLGQILKNLLSNALKFTAE-GEVKITIGRPENDKLPPGL 726 Query: 737 -------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 ++ +VRDTG+G+ +LE + F Q + + GTGLGL +++ + Sbjct: 727 KLNPARTLVFQVRDTGIGIAADKLEVVFEAFKQADGTTSRKFGGTGLGLSISRQLARLLG 786 Query: 790 GKFYIFSTPAKGTLIEIIFP 809 G+ S +G++ + P Sbjct: 787 GELTAASRAGEGSVFTLWLP 806 >gi|302381354|ref|YP_003817177.1| response regulator receiver modulated diguanylate phosphodiesterase [Brevundimonas subvibrioides ATCC 15264] gi|302191982|gb|ADK99553.1| response regulator receiver modulated diguanylate phosphodiesterase [Brevundimonas subvibrioides ATCC 15264] Length = 1138 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 85/256 (33%), Positives = 131/256 (51%), Gaps = 5/256 (1%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 SE +L A+ AE+ ++ KSDFLA +SHEIRTPL I+ S+++ Sbjct: 253 SEVAARTGELVVARDAAEQANAAKSDFLAVMSHEIRTPLNGILALSDMLATSDL----PQ 308 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 R YA+ I +SG +L I+ND+LD SK+E+GKM+L V L +A + SL A Sbjct: 309 RQQRYADVISKSGKSLLGIINDILDFSKVEAGKMDLEIVEVDLADAAEDVASLFSEKAAS 368 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR 740 K + + +P++L D ++Q+ N+++NAI FT GG +I I + + Sbjct: 369 KGLDLAVFVDPRLPQVLGDPTRLRQVIGNLVNNAIKFTDLGGVLIAIDRDPEDPRRIRVA 428 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG G+ +L + F Q S GTGLGL + +V + G + + ST + Sbjct: 429 VHDTGPGIPADKLPTLFEAFTQADQSTTRTHGGTGLGLAICDRLVRSMGGVWSLSSTVGE 488 Query: 801 GTLIEIIFPLYDTSHP 816 G+ PL+ + P Sbjct: 489 GSTFAFSAPLHPVADP 504 >gi|119491241|ref|XP_001263209.1| sensor histidine kinase/response regulator, putative [Neosartorya fischeri NRRL 181] gi|119411369|gb|EAW21312.1| sensor histidine kinase/response regulator, putative [Neosartorya fischeri NRRL 181] Length = 2332 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/256 (31%), Positives = 132/256 (51%), Gaps = 23/256 (8%) Query: 567 EKNKLSHAKKIAEKESSH-----------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + H K+AE E+ H KS FLA +SH++RTP+ +IG SE++K Sbjct: 1858 QAREAEHKAKVAEAEAKHNVKLKEDAARAKSIFLANISHDLRTPMNGVIGLSELLKGTNL 1917 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 N EY I + +L ++ND+LD SK+E+GKM + P+++ E +SE + + Sbjct: 1918 ----NKEQDEYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNVKETISEVVRAL 1973 Query: 676 QLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQII---IST 729 + Y + R L+ + +P +L D + QI +N+LSN+ FTP G + +S Sbjct: 1974 R-YTHRDRGLVTIEDLDKVPPDLVVLGDPVRLHQIFMNLLSNSYKFTPKGSITVRAKVSR 2032 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DAN 788 + + V DTG+G+ + + KPF Q +S G+GLGL + KA++ D Sbjct: 2033 EGKNRVRLECAVSDTGIGIPEEQKSRLFKPFSQADSSTARSYGGSGLGLSICKAIIEDVL 2092 Query: 789 MGKFYIFSTPAKGTLI 804 G ++ STP GT + Sbjct: 2093 GGAIWLDSTPGVGTTV 2108 >gi|126460803|ref|YP_001041917.1| histidine kinase [Rhodobacter sphaeroides ATCC 17029] gi|126102467|gb|ABN75145.1| histidine kinase [Rhodobacter sphaeroides ATCC 17029] Length = 849 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 107/371 (28%), Positives = 182/371 (49%), Gaps = 32/371 (8%) Query: 450 EVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 E M+L + ++A DG + +R E ++L +R + YP +P F E + Sbjct: 200 EQMRLRAAIDAIPDGFVLFDRAERLVLCNDRYRAI---YPRSAEALRPGAPFEEILRHGL 256 Query: 509 MNHYLTEILSLDLRQTLEKIT----LGSTKEEKL---LSLRIIIKKLPFSSCYSLTMHDI 561 + E L + +++ LG E++L LR+I + P L + DI Sbjct: 257 AHGQFPEALGREEEWLADRLAAFRHLGGAAEQQLDDGRWLRVIEHETPDGGRVGLGV-DI 315 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI------KNQRF 615 +E K+++ L A+ AE S KS FLA +SHEIRTP+ I+G ++++ ++QR Sbjct: 316 TELKRQQAALESARAAAEAASRAKSAFLANMSHEIRTPMNGIVGMADLLCETVLTEDQRL 375 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 ++ I SG +L I+ND+LD SKIE+ ++ LH EP L+ + E L+ Sbjct: 376 ----------FSETIRSSGEALLVIINDILDYSKIEANRLTLHPEPFDLERTIHEVAMLL 425 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTH 731 Q A K I + F +P R + D ++Q+ N++ NA+ FT +G +++ Sbjct: 426 QPKARAKGIDLLIDFDLFLPTRFVGDPGRLRQVLTNLIGNAVKFTAAGHVLIRVVGLEVA 485 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 ++ + V DTG+G+ L+ F QI R EGTGLGL + + +++ G Sbjct: 486 PGRHDLRVTVEDTGIGIAPEHLDHVFGEFNQIEAEATRRFEGTGLGLAITRRLIELMQGA 545 Query: 792 FYIFSTPAKGT 802 ++ S P +G+ Sbjct: 546 VWVESEPGRGS 556 >gi|295108000|emb|CBL21953.1| amino acid-binding domain sensor hybrid histidine kinase [Ruminococcus obeum A2-162] Length = 951 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/239 (32%), Positives = 135/239 (56%), Gaps = 6/239 (2%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +KL A K AE S K+ FL +SH+IRTP+ AI+G++++++++ G G P E+ Sbjct: 556 DKLEIALKKAEDASLSKTRFLNNMSHDIRTPMNAILGYAQLMEDELKGK-GLPETSEHLE 614 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + +SG L+L I+N++LD+++IES +M L +++ ++ A +K I++ Sbjct: 615 KLQQSGTLLLSIINNVLDMARIESERMELDENYCRIEDVWKSLFAVFDEKAMKKNIVLHY 674 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRD 743 + +L D+ VK+I +NILSNAI +TP+GG +++ S +E V + V D Sbjct: 675 AMNVEHEHVLTDVTKVKEIFVNILSNAIKYTPAGGSVMVDIDELSCDESGYMIVRISVSD 734 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TG+GM+ K + F + N+ + + GTGLG+ + K V+ G + S KG+ Sbjct: 735 TGIGMSQDYQTKIFEAFTREQNTTKSKIAGTGLGMSIVKKYVELLGGIINVESELGKGS 793 >gi|295101501|emb|CBK99046.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii L2-6] Length = 978 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 102/338 (30%), Positives = 168/338 (49%), Gaps = 14/338 (4%) Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 + +L G P ++ + F + + P +L +LS R+ + TKE + Sbjct: 365 IERLLGIPWREVRQNAFALD-KLGAPEQAESFLDGLLSGQQREWDLEFEHLETKERRWFH 423 Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 I ++ + Y L M D + KQ LS A AE + KS FL+ +SH+IRTP+ Sbjct: 424 NIAIGSEVEGRTKYILVMSDRTADKQVNQALSDAVAAAETANRAKSAFLSNMSHDIRTPM 483 Query: 601 TAIIGFSEV-IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 AIIGF+ + I N R +Y S + +L ++ND+LD+S+IESGK++L Sbjct: 484 NAIIGFTTLAISNID----DKERVKDYLAKTLASSSHLLSLINDVLDMSRIESGKLHLEE 539 Query: 660 EPVSLDEAVSEAISLV--QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717 V+L E + + ++V Q+YA + + + + + D + QI LN+LSNAI Sbjct: 540 VEVNLSEVLHDLKTIVSGQIYAKQLELYMDAMDVTD-EDVYCDKTRLNQILLNLLSNAIK 598 Query: 718 FTPSGGQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 FTP+GG + + + + + R++D G+GM+ +K +PF + S R + Sbjct: 599 FTPAGGTVSVRVRQLAGQVRGCGQYEFRIKDNGIGMSPEFAKKIFEPFERERTSTVSRIQ 658 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLG+ + K +VD G + + KG+ I PL Sbjct: 659 GTGLGMAITKNIVDMMGGTIEVQTAQGKGSEFIIRVPL 696 >gi|163742074|ref|ZP_02149463.1| sensor histidine kinase/response regulator [Phaeobacter gallaeciensis 2.10] gi|161384795|gb|EDQ09175.1| sensor histidine kinase/response regulator [Phaeobacter gallaeciensis 2.10] Length = 764 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 85/268 (31%), Positives = 152/268 (56%), Gaps = 12/268 (4%) Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 LR++ ++ SL + DI+ Q + +L A++ AE + KS FLA +SHEIRTP+ Sbjct: 173 LRLLDQRGHGGDMVSLAL-DITSTVQYEEELQAARERAEAANRAKSAFLANMSHEIRTPM 231 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 ++G +E++ + L + + + YAN I SG +L I+ND+LD SKIE+ K+ LH E Sbjct: 232 NGVVGMAELLSDTN---LSDEQQL-YANTIKNSGEALLVIINDVLDYSKIEAQKLELHPE 287 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFT 719 P L+ +V E + L+Q A +K + + + +P + D ++Q+ N++ NA+ FT Sbjct: 288 PFDLERSVHEVLMLLQPTARDKGLTLLLDYDLFLPTSFVGDPGRIRQVLTNLVGNAVKFT 347 Query: 720 PSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 S G + + T SN + + + + DTG+G+ +++ F Q+ + + + EGT Sbjct: 348 -SEGHVALQITGISNADDKICSIHVTIEDTGIGIPEEKVQDIFGEFNQVEDERNRQFEGT 406 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GLGL ++K +++ G+ ++ S KG+ Sbjct: 407 GLGLAISKRLIELMGGEIWVESQEGKGS 434 >gi|21243758|ref|NP_643340.1| histidine kinase-response regulator hybrid protein [Xanthomonas axonopodis pv. citri str. 306] gi|21109346|gb|AAM37876.1| histidine kinase-response regulator hybrid protein [Xanthomonas axonopodis pv. citri str. 306] Length = 1191 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 134/246 (54%), Gaps = 8/246 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S K+ FLA + HE+RTP+T ++G SE++ PL + R YA+ I Sbjct: 799 HKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQT---PL-DGRQQGYASAIQL 854 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 +G +L +VND LD+++IE+GK+ L + L + V +A+ LV+ A +K++ + Sbjct: 855 AGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQAVELVRPSAEQKQLAFHCELDD 914 Query: 693 NIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VRDTGVGMT 749 +P L D V+QI LN+L NA+ FT G + TT + + LR VRDTG GM+ Sbjct: 915 ALPPALHGDASRVQQILLNLLFNAVKFTERGSVHLRVTTLSQHTRQGLRVEVRDTGPGMS 974 Query: 750 NYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + + F Q + + R G+GLGL + + + A G + S +G + Sbjct: 975 AEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGAVTVASELGQGACFVVEL 1034 Query: 809 PLYDTS 814 PL+ S Sbjct: 1035 PLHWVS 1040 >gi|320354602|ref|YP_004195941.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320123104|gb|ADW18650.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 1058 Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/272 (30%), Positives = 140/272 (51%), Gaps = 10/272 (3%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y+ HD++E KQ L K+ AE + KS FLA +SHEIRTPL AIIG + + + Sbjct: 485 YAGVGHDVTERKQTAEALLRTKEEAEAANRAKSRFLANMSHEIRTPLNAIIGMTHLAMHT 544 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 R + + + + + + +L ++ND+LDISK+E+G+++L EP V +++ Sbjct: 545 R----EDDKRQRFLATVAHAADSLLGLLNDILDISKMEAGQLSLATEPFDPRRLVEASVA 600 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + A+EK + +R +P +L D ++QI LN+L NA+ FTP+G + + Sbjct: 601 TLAAQASEKGLDLRLHLGPALPDCLLGDALRLRQILLNLLGNAVKFTPAGTITLEAFAEE 660 Query: 733 SNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + + + LRV DTG+G+ +LE F Q NS + G GLGL ++ + Sbjct: 661 AEDADNRVYLHLRVTDTGIGIPAEKLELIFNRFEQADNSYGRQYGGAGLGLSISAQLAAL 720 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 G+ + S +G+ + P + P + Sbjct: 721 MHGRLWAESRENQGSTFHCLIPFPRCAWPAEA 752 >gi|13641117|gb|AAK31604.1| RtpA-like protein [Pseudomonas synxantha] Length = 848 Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 136/236 (57%), Gaps = 7/236 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ +PR ++Y Sbjct: 169 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----SPRQLDYLGT 224 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRT 688 I++S + + I+N++ D SKIE+GK+ L P +L + + + +++ A+ K++ L+ Sbjct: 225 IEKSADNLXGIINEIXDFSKIEAGKLVLDSVPFNLRDLLQDTLTIFAPAAHAKQLELVSL 284 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VRDTGV 746 + + ++ D +KQI N++SNAI FT G + V LR V+DTG+ Sbjct: 285 VYRDTPLALVGDPLRLKQILTNLISNAIKFTREGTSSPGDGRDEQEDSVQLRISVQDTGI 344 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G++N ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 345 GLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 400 >gi|284052131|ref|ZP_06382341.1| periplasmic sensor signal transduction histidine kinase [Arthrospira platensis str. Paraca] gi|291570319|dbj|BAI92591.1| two-component sensor histidine kinase [Arthrospira platensis NIES-39] Length = 573 Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 85/270 (31%), Positives = 141/270 (52%), Gaps = 20/270 (7%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I Q +L AK AE + KS FLA +SHE+RTPL AIIG+SE++ ++ LG Sbjct: 299 IKRVAQYTEELQKAKIAAEAANRSKSVFLANMSHELRTPLNAIIGYSEML-HEESKDLGY 357 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 ++ I +G +LD+++D+LDISKIE+G + L+ E ++ + + + ++ Sbjct: 358 DDFLPDLERIQTAGKHLLDMISDILDISKIEAGHVTLYLEDFAVQQLIDDVVATATPLTE 417 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG---QIIIST-------T 730 + + ++ A ++ + ADL V+Q+ LN+LSNA FT G Q+ T Sbjct: 418 KNQNALKVKTAKDLGTMYADLPKVRQVLLNLLSNASKFTDKGTITLQVQRVTKIPNEWKK 477 Query: 731 HTSNEE---------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 TSN E ++ +V+DTG+GM +++ K F Q S R GTGLGL ++ Sbjct: 478 DTSNAERFASAKTQYLVFQVKDTGIGMNQEQVQHIFKAFIQADASTTKRFGGTGLGLAIS 537 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + + + G Y+ S G+ + P++ Sbjct: 538 QRLCEILGGGIYVKSREGVGSTFVVWLPVH 567 >gi|229917934|ref|YP_002886580.1| histidine kinase [Exiguobacterium sp. AT1b] gi|229469363|gb|ACQ71135.1| histidine kinase [Exiguobacterium sp. AT1b] Length = 613 Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 126/218 (57%), Gaps = 5/218 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+ ++ VSHE+RTPL++I GF+E++ ++ L R Y I + +VND Sbjct: 386 KSELVSTVSHELRTPLSSIYGFTELMLSR---DLKESRRELYLKTIHDEAKRLSYLVNDF 442 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+ K+ESGK +EPV L + V+++++ Q + + I + I ADL + Sbjct: 443 LDLQKMESGKQAFEWEPVDLYQLVTDSVAFYQETTDRHELFIDADTEQDFI-IDADLEGM 501 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +Q+ N+LSNAI ++P GG I++S +EEV+++VRD G+G+ + L F ++ Sbjct: 502 RQLLGNLLSNAIKYSPDGGNILVSLERV-DEEVVMKVRDHGMGIPSASLPHLFGKFYRVD 560 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 NS + + GTGLGL + K + A+ G+ ++ S +G+ Sbjct: 561 NSDRRKIGGTGLGLAICKEIAKAHEGQLHVESVYGEGS 598 >gi|320101775|ref|YP_004177366.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] gi|319749057|gb|ADV60817.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] Length = 1093 Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 115/410 (28%), Positives = 196/410 (47%), Gaps = 51/410 (12%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIIN----REGIILSTNRAVSKLFGYPVE---DILRK 495 ++R ++E+ + ++++ +D +AI + R I+ N G ++L + Sbjct: 277 SQRHNQVELRLMHAVVDHAADAVAITSSAHGRHRAIVYANPTFMDWLGMDASSYFELLGR 336 Query: 496 PFTVF--LEQNTPSVMNHYLTEILSLDL-RQTLEKITLGSTKE----------EKLLSLR 542 F LE S + I +L R+TL K GST E E+ LR Sbjct: 337 EIEEFFCLEDQPSSDASSATISISGRNLARETLLKRRDGSTLEVDLQVFTIPGEREADLR 396 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 ++ DIS K+ + +L AK+IA++ + K+ FLA +SHEIRTPL + Sbjct: 397 LV-----------WVARDISVRKRFEAQLVEAKRIADQANEAKTRFLAGMSHEIRTPLNS 445 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 ++G + ++ + PL + + A I SG +L++VN +LD+SKIESG+M L + Sbjct: 446 VLGMTRLLMDT---PLTAEQR-DLAAAIQSSGESLLELVNGVLDLSKIESGRMELEHASM 501 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPS 721 S V + ++ A K + + A ++P R+ D ++Q+ +N+ SNA+ FT S Sbjct: 502 SPRGVVESVLDMIAATAERKGLEVAARVAEDVPERVRGDAAKLRQVLVNLASNAVKFTAS 561 Query: 722 G---------GQIIISTTHTSNEE---VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQ 767 G GQ + S + +IL VRDTGVG+ ++ + + Q S Sbjct: 562 GSVTIDVITLGQCPLRPGRDSVSDRPGLILSFTVRDTGVGIAPDKVSRLFDAYRQADASI 621 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY-DTSHP 816 GTGLGL ++K +V+ G+ + S P +G++ + D+SHP Sbjct: 622 TRLYGGTGLGLAISKKLVELMGGEIEVESEPGRGSIFRFTIRVEPDSSHP 671 >gi|297538562|ref|YP_003674331.1| integral membrane sensor hybrid histidine kinase [Methylotenera sp. 301] gi|297257909|gb|ADI29754.1| integral membrane sensor hybrid histidine kinase [Methylotenera sp. 301] Length = 1148 Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/253 (29%), Positives = 140/253 (55%), Gaps = 6/253 (2%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L +I ++ +L A+++A++ + KS ++ +SHE+RTPL +I+G+++++ N Sbjct: 665 GLLQREIELHQKTDAELQLARQVADQANQAKSRYITGISHELRTPLNSILGYAQLLDNDT 724 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P + R ++ I RSG +L ++ LDI++IE GK+ +P+ E + + +S+ Sbjct: 725 SIP--DSR-LQAIRVIRRSGEHLLSLIEGTLDIARIEGGKLTFDIKPLRFPEFIKQIVSM 781 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +L A K I + +P+++ AD + + QI +NIL NA+ FT GG ++ + Sbjct: 782 FELQARNKGINFAYEVTSELPKMVRADQKRLSQILINILGNAVKFTQHGG--VVFRVQYA 839 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E V + + DTG G+ +E++ +PF + + R GTGLGL ++K + G+ Sbjct: 840 RELVQIEIEDTGPGIQTHEIDSVFEPFARGSAAANDRIGGTGLGLTISKLLTQLMGGEIS 899 Query: 794 IFSTPAKGTLIEI 806 + S KGT+ +I Sbjct: 900 VNSVVGKGTIFKI 912 >gi|239626561|ref|ZP_04669592.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516707|gb|EEQ56573.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 686 Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/275 (28%), Positives = 149/275 (54%), Gaps = 13/275 (4%) Query: 545 IKKLPFSSCYSLTMHDISEWKQE---KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 + K+ F++ ++ I+E +QE + L A + A++ S KS FLA++SH+IRTP+ Sbjct: 262 VSKVVFAN-MNIHQQKINEMQQEEENRKALMTAYETAKEASEAKSSFLAQMSHDIRTPMN 320 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 AIIG + + + P R + I+ S + +L +++D+LD+S+IE GKM L P Sbjct: 321 AIIGMTAIAMSHSHEP---ERVEDCLEKINMSSSHLLALIDDVLDMSRIEKGKMQLMDAP 377 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTP 720 +D+ V E +++++ A E+ ++ A+ R++ D ++Q+ LN++SN++ +TP Sbjct: 378 FCMDKLVDEVVTIIRPSAEERGHSLKVDTADLKHRRLIGDSGRLRQVLLNLMSNSVKYTP 437 Query: 721 SGGQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 G + ++ + + V D+G+GMT + PF + ++ +GTG Sbjct: 438 GNGTVKLTVKEVAQRVAGFGNFVFIVEDSGIGMTEEFRKYIFVPFLREEKVRETHIQGTG 497 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 LG+P+ + +++A G + S P +G+ + L Sbjct: 498 LGMPITQGIINAMQGSIQVESEPGRGSRFTVTLSL 532 >gi|330808143|ref|YP_004352605.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376251|gb|AEA67601.1| putative histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 622 Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 125/243 (51%), Gaps = 7/243 (2%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L+ AK AE K+ FLA +SHEIRTP+ +IG +E++ +P I Sbjct: 220 LNQAKNAAEDADRSKTSFLATMSHEIRTPMYGVIGATELLARSAL----DPEQRRLLTTI 275 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG +L +++++LD++KIE+GK+ L + VS + L++ +K I++ F Sbjct: 276 HSSGRTLLSLIDNILDLAKIEAGKLELKPRVFEVRALVSSCMELIRQNIQDKPIVLEAQF 335 Query: 691 ANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL--RVRDTGVG 747 + ++P ++ D+ ++QI +N+L NA FT +G ++ TT + L +RDTG+G Sbjct: 336 SPDVPPLVKTDMDCLRQILINLLGNAGKFTEAGKISLLVTTSGYGSQAWLDFSIRDTGIG 395 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + KPF Q R G+GLGL + K +++A G S P G+ Sbjct: 396 IPTERQDNLFKPFAQFKGPASQRFTGSGLGLSICKNLLEAQQGTLSFTSEPGVGSTFSFS 455 Query: 808 FPL 810 PL Sbjct: 456 LPL 458 >gi|119898693|ref|YP_933906.1| putative sensor-regulator protein [Azoarcus sp. BH72] gi|119671106|emb|CAL95019.1| putative sensor-regulator protein [Azoarcus sp. BH72] Length = 1012 Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 133/250 (53%), Gaps = 10/250 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q +LS A A++ S KSDFLAR+SHEIRTP+ A+IG + + +P+ Sbjct: 258 EQRTRQLSIATAEAQQASRAKSDFLARMSHEIRTPMNAVIGLTHLALRTEL----SPQQR 313 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +Y I S +L I+ND+LD SKIE+GK+ L P +L + + ++V + A EK + Sbjct: 314 DYLRKIRGSSQALLGIINDILDFSKIEAGKLRLEQIPFTLHDVIDNLSNIVTVKAAEKGL 373 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR- 742 + + IP R+ D + QI +N+ +NA+ FT G++++ E +RVR Sbjct: 374 DVLLAIDPAIPDRMRGDPLRLSQILINLGTNAVKFTER-GEVVVDCRLIDKTEDCVRVRF 432 Query: 743 ---DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 DTG+G++ + + F Q S R GTGLGL ++K +++ G + S P Sbjct: 433 SVTDTGIGISAAQRGLLFQSFHQADGSITRRFGGTGLGLAISKQLIEIMEGSLEVASEPG 492 Query: 800 KGTLIEIIFP 809 +G+ + P Sbjct: 493 EGSTFSFVIP 502 >gi|186473973|ref|YP_001861315.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184196305|gb|ACC74269.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 939 Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/259 (30%), Positives = 143/259 (55%), Gaps = 12/259 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ +L+ AK+ A+ + KSDFLA +SHE+RTPL I+G+++++K + + R + Sbjct: 459 RERTAELAIAKEHADAANQAKSDFLAHMSHELRTPLNGILGYAQILKRDKN---LDRRQV 515 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I RSG +L +++D+LD++KIE+G+M L+F V L + + +++ A EK + Sbjct: 516 DGLMVIQRSGEHLLTLIDDILDMAKIEAGRMELNFSDVPLARFIHFIVETMRVKATEKGL 575 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 A ++P + D ++Q+ LN++SNAI FT G + + + VRD Sbjct: 576 EFACEMAPDLPAGVRVDEIRLRQVLLNLISNAIRFTEQGS-VRLRVGFMPPTRLCFEVRD 634 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ LE +PF Q+ ++ + R GTGLGL +++ +V + ++ S G+ Sbjct: 635 TGIGIEEARLEAIFRPFEQVSDA-RYRSGGTGLGLAISRELVRLMGSEIHVESHHGTGSA 693 Query: 804 ------IEIIFPLYDTSHP 816 ++++ PL P Sbjct: 694 FSFELNVQLLAPLSTVVAP 712 >gi|88857213|ref|ZP_01131856.1| Signal transduction histidine kinase [Pseudoalteromonas tunicata D2] gi|88820410|gb|EAR30222.1| Signal transduction histidine kinase [Pseudoalteromonas tunicata D2] Length = 732 Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/236 (34%), Positives = 127/236 (53%), Gaps = 8/236 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 KL+ AK AE KS FLA +SHEIRTP+ I+GF +++++ P ++ ++ Sbjct: 352 KLNQAKLDAESSEQLKSQFLANMSHEIRTPMNGILGFVQLLQSSHL----TPEQEDFLHH 407 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+ S ++L I+ND+LD+SKIE+ ++ LH P +L + + + ++L + K I I + Sbjct: 408 INSSSKMLLTIINDILDLSKIEANQLTLHVMPCNLTQILQDVVTLFKPACLAKGIKIEFT 467 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII---STTHTSNEEVILRVRDTGV 746 AN + D VKQI N++SNAI FT G + T N + + V DTG+ Sbjct: 468 -ANAAYWVYCDEMRVKQIFTNLISNAIKFTLKGKVTLTLKKITATDENTQFEVNVEDTGI 526 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+ + + K KPF Q R GTGLGL ++K +++ G + S GT Sbjct: 527 GIADDVIGKLFKPFIQAQGDTTRRFGGTGLGLSISKRLIELMQGNISLTSKEHVGT 582 >gi|315186738|gb|EFU20496.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM 6578] Length = 1078 Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 133/252 (52%), Gaps = 8/252 (3%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 ++ DI+ +K L A++ AE+ + KS FLA +SHEIRTPL AI G S+++ R Sbjct: 540 AVVTRDITSYKDALRHLEDARRQAEEANRAKSAFLASMSHEIRTPLNAITGMSDLLLLSR 599 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 +P E I S +L ++ND+LD+S+IE+G++ L P+ + V + Sbjct: 600 V----SPEVEEGLAIIKDSAGTLLALINDILDLSRIEAGRIELERIPLRFPDLVRHTWEM 655 Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT- 732 + A K + + +P + D ++QI +N+LSNA+ FT GG + T H Sbjct: 656 FRPQAETKGLSFELHLSEGLPSEVNGDPVRIRQILINLLSNALKFTEEGGVTLSVTGHRM 715 Query: 733 --SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + EV L V DTG+G+ +LE+ +PF Q +S R GTGLGL +++ + + G Sbjct: 716 YDRDWEVELVVEDTGIGIPPEKLERIFEPFTQADSSITRRYGGTGLGLSISRQLAEMMGG 775 Query: 791 KFYIFSTPAKGT 802 + S +G+ Sbjct: 776 TVVVSSEVGRGS 787 >gi|260432099|ref|ZP_05786070.1| MmoS [Silicibacter lacuscaerulensis ITI-1157] gi|260415927|gb|EEX09186.1| MmoS [Silicibacter lacuscaerulensis ITI-1157] Length = 738 Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 85/284 (29%), Positives = 150/284 (52%), Gaps = 14/284 (4%) Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 +++I ++ SL + +I+ Q + +L A+K AE + KS FLA +SHEIRTP+ Sbjct: 175 IKLIDQRGQGGDVVSLAL-NITASVQHEAQLQAARKKAEAANRAKSAFLANMSHEIRTPM 233 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 I+G ++++ + N Y + I SG +L I+ND+LD SKIE+ K+ LH E Sbjct: 234 NGIVGMTDLLSETQL----NDEQRLYVDTIRASGEALLVIINDVLDYSKIEADKLVLHPE 289 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFT 719 L+ ++E + L+Q A +K + + + +P + + D V+QI N++ NA+ FT Sbjct: 290 EFDLERCINEVVMLLQPSARDKGLTLLVDYDLFLPTLFVGDPGRVRQILTNLVGNAVKFT 349 Query: 720 PSGGQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 G ++I T +E ++ + + DTG+G+ +++ F QI + + + +GT Sbjct: 350 LH-GHVLIRVTGVPDESRNDCDIHIAIEDTGIGIPPDKIDHIFGEFNQIDDKKTRQFDGT 408 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSHP 816 GLGL + K ++ G ++ S P KG+ + P S P Sbjct: 409 GLGLSITKRLISLMGGTLWVDSDPGKGSCFGFRLTLPTVVGSQP 452 >gi|221369052|ref|YP_002520148.1| Sensor protein [Rhodobacter sphaeroides KD131] gi|221162104|gb|ACM03075.1| Sensor protein [Rhodobacter sphaeroides KD131] Length = 816 Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 135/250 (54%), Gaps = 17/250 (6%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +T HD++E ++ A++ AE + K+DFLA +SHEIRTP+ +I G +E++K Sbjct: 293 VTFHDVTEARR-------AREQAEALARAKTDFLATMSHEIRTPIHSIGGVTELLKQSEL 345 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 R Y + I+RS ++ IV+D+LD ++IESG + L S+D+ + + ++ Sbjct: 346 AS----RDRGYVDAIERSTEVLASIVSDVLDYARIESGLVELEQVDFSIDQILDDVARMM 401 Query: 676 QLYANEK---RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 Q K RI+I + ++P +L D ++QI +N+ SNA+ FTP G +I + Sbjct: 402 QPLVRRKPQLRIVIERT---DLPPVLGDAGKLRQILINLTSNAVKFTPEGTVVIGAERLA 458 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 V DTG G+ +LE+ KP+ Q +S R GTGLGL + + + G+ Sbjct: 459 GGHRFRFTVSDTGPGIAAEKLEEIFKPYIQSDSSISRRHGGTGLGLAICRRLAGHLGGRL 518 Query: 793 YIFSTPAKGT 802 + STP G+ Sbjct: 519 DVRSTPGFGS 528 >gi|332560655|ref|ZP_08414973.1| DMSO/TMAO-sensor hybrid histidine kinase [Rhodobacter sphaeroides WS8N] gi|332274453|gb|EGJ19769.1| DMSO/TMAO-sensor hybrid histidine kinase [Rhodobacter sphaeroides WS8N] Length = 816 Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 135/250 (54%), Gaps = 17/250 (6%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +T HD++E ++ A++ AE + K+DFLA +SHEIRTP+ +I G +E++K Sbjct: 293 VTFHDVTEARR-------AREQAEALARAKTDFLATMSHEIRTPIHSIGGVTELLKQSEL 345 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 R Y + I+RS ++ IV+D+LD ++IESG + L S+D+ + + ++ Sbjct: 346 AS----RDRGYVDAIERSTEVLASIVSDVLDYARIESGLVELEQVDFSIDQILDDVARMM 401 Query: 676 QLYANEK---RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 Q K RI+I + ++P +L D ++QI +N+ SNA+ FTP G +I + Sbjct: 402 QPLVRRKPQLRIVIERT---DLPPVLGDAGKLRQILINLTSNAVKFTPEGTVVIGAERLA 458 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 V DTG G+ +LE+ KP+ Q +S R GTGLGL + + + G+ Sbjct: 459 GGHRFRFTVSDTGPGIAAEKLEEIFKPYIQSDSSISRRHGGTGLGLAICRRLAGHLGGRL 518 Query: 793 YIFSTPAKGT 802 + STP G+ Sbjct: 519 DVRSTPGFGS 528 >gi|254443126|ref|ZP_05056602.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198257434|gb|EDY81742.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 724 Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 137/226 (60%), Gaps = 16/226 (7%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 +S+FLA +SHEIRTP+ ++G +E++ + G EY + I SG +L ++N++ Sbjct: 198 RSEFLANMSHEIRTPMNGVVGMAELLGHTELG----EEQREYVDTIRNSGEALLGLINNI 253 Query: 645 LDISKIESGKMNL---HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIP-RILA 699 LD+SK+E+GKM L F+P S+ + + + L+ A+EK I + T FA + +P +++ Sbjct: 254 LDLSKLEAGKMILDAIEFDPRSV---LEDTVDLLGAKADEKLIEL-TGFAESQVPSKLIG 309 Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKA 756 D ++Q+ LN++ NA+ FT +G ++ ++ +TS+ E +LR VRDTGVG+ + ++ Sbjct: 310 DPSRLRQVLLNLVGNALKFTANGTVRLRVTLMNTSSSEAVLRFSVRDTGVGIDEEQQKRL 369 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 KPF Q + + GTGLGL +++ + A G+ + S KG+ Sbjct: 370 FKPFSQAEGAVARKYGGTGLGLSISQQIARAMGGQILLESERDKGS 415 >gi|83646376|ref|YP_434811.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83634419|gb|ABC30386.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 842 Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/244 (34%), Positives = 138/244 (56%), Gaps = 8/244 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E K+ + K+ AE+ + KS+FLAR+SHEIRTP+ ++G + ++ + PL + Sbjct: 431 ELKKNIKEACREKEAAEQANQAKSEFLARMSHEIRTPMNGVLGMASILADT---PLSEKQ 487 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +Y + I SG +L+I+ND+LD SKIE+GK++L P L E +S + A+ K Sbjct: 488 R-KYLDTIVSSGESLLNIINDILDFSKIEAGKLDLDNHPFKLSELLSYLTDIFSPRAHSK 546 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QII--ISTTHTSNEEVI 738 I + + ++ IP ++ D ++QI N++ NA+ FT G QII IS N ++ Sbjct: 547 NIELICAISDGIPETLIGDSGRLRQILTNLVGNALKFTQQGSIQIIVEISDEDARNMKLK 606 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V DTG+G+ + +K + F Q S GTGLGL ++K++V+ G+ + S P Sbjct: 607 ISVIDTGIGIPLGKQQKIFESFSQADGSTTRTYGGTGLGLSISKSLVELMGGELGVESRP 666 Query: 799 AKGT 802 +G+ Sbjct: 667 GEGS 670 >gi|90419743|ref|ZP_01227652.1| putative sensor histidine kinase, response regulator [Aurantimonas manganoxydans SI85-9A1] gi|90335784|gb|EAS49532.1| putative sensor histidine kinase, response regulator [Aurantimonas manganoxydans SI85-9A1] Length = 919 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 82/240 (34%), Positives = 139/240 (57%), Gaps = 12/240 (5%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 ++ AK AE+ ++ KS+FLA VSHEIRTP+ ++ +E++ P+ + RY+ +A Sbjct: 269 EMRSAKDEAERANAAKSEFLATVSHEIRTPMNGMLVMAEMLSA---APIPS-RYLRHAEI 324 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RSG +L+I+ND+LD+SKIE+G+++L P+S+D V + SL A EK + I T Sbjct: 325 ILRSGRGLLNILNDILDMSKIEAGRLDLEEIPLSVDTLVEDVASLFAEKAREKSLSIATM 384 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVR 742 ++P ++ D + Q+ N+++NA+ FT +GG + I+ + E+ + +R Sbjct: 385 IDVDVPAEVIGDPVRISQVLTNLVNNALKFTETGG-VTIAVECVAAEDAGGPPMLGFTIR 443 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ +L K F Q + + GTGLGL ++K +V+A G + S G+ Sbjct: 444 DTGIGIPADKLGKLFGRFTQADQTITRKFGGTGLGLAISKQLVEAMGGTVRVTSEEGVGS 503 >gi|320353300|ref|YP_004194639.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320121802|gb|ADW17348.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 1282 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 122/412 (29%), Positives = 197/412 (47%), Gaps = 48/412 (11%) Query: 436 EDVDTRINKRKMEIEVMQ----LCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVE 490 ED+ R+ +ME E+ + +++E+ G+AII+ E II N + LFG E Sbjct: 601 EDITDRM---RMEAELRENERIQRTLIESLPIGLAIIDGESRIIEEVNPLAASLFGADRE 657 Query: 491 DILRKPFTVFL----EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 I+ + FL E + P +++ L S L + TL K ++++++ K Sbjct: 658 TIIGRECHHFLCPQDELSCP-IIDRGLAVDNSDRLMLRADGTTLPVLKTVRMITIKGRRK 716 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKI--------------AEKESSHKSDFLARV 592 L C+ DI E KQ + + A + AE S KS FLA + Sbjct: 717 LL---ECFV----DIRERKQAEESVREANRQLEAAIVRAERLAREAESASRAKSQFLANM 769 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHEIRTP+ AIIG + + R + + + + + S +L ++ND+LD SK+E+ Sbjct: 770 SHEIRTPMNAIIGMTHLAMQTR----DDDKRGRFLDTVRHSAESLLGLLNDILDFSKMEA 825 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA--DLRSVKQIALN 710 G++ L P S + + E ++ +Q+ A EK + + A N+P L DLR ++QI LN Sbjct: 826 GQLKLSTAPFSPRQLLEEVMATLQMPAGEKGLRLAMDIAPNLPPCLVGDDLR-LRQILLN 884 Query: 711 ILSNAIHFTPSGGQIIISTTH-----TSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIP 764 ++ NAI FT + G I + T +E +I V DTG+G+ + F Q Sbjct: 885 LVGNAIKFT-AAGSITLRITQEQPSSGGSEPLIHFTVIDTGIGIAEEKRALIFNSFEQAD 943 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 NS + GTGLGL + K +V GK ++ S +G+ ++ PL P Sbjct: 944 NSYVRQYGGTGLGLSICKQLVTLMGGKIWVESRINQGSAFHVLVPLPVCDQP 995 >gi|329848851|ref|ZP_08263879.1| sensory box protein [Asticcacaulis biprosthecum C19] gi|328843914|gb|EGF93483.1| sensory box protein [Asticcacaulis biprosthecum C19] Length = 1358 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 138/256 (53%), Gaps = 11/256 (4%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + A+ AE + KS+FLA +SHEIRTPL AI+G + ++ N + P + +Y++ + Sbjct: 972 MVEARVAAESANRAKSEFLANMSHEIRTPLNAIVGLTHIMLNYKTDPASHGKYLQ---TM 1028 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 S + ++ ++ND+LD+++IE+ ++ L P L E V E + + ++ EK + F Sbjct: 1029 KDSADTLMQLINDVLDLARIEADRVELEMAPCPLHEVVRECLGITEVKGAEKGLACGLDF 1088 Query: 691 ANNIPR---ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILRVRDT 744 +P + D+ +KQI +N+LSNA+ FT +G + +S +E V +RVRDT Sbjct: 1089 --GLPHGTVVETDVLRLKQILMNLLSNAVKFTQTGRIDVEVSAAPARSELLPVTIRVRDT 1146 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 GVG+ ++E F Q S R G+GLGL +++ + + G+ + S KGT+ Sbjct: 1147 GVGIAADKIEHIFAQFTQEDASITRRFGGSGLGLAISRRLSEMLGGRLTVESEVGKGTVF 1206 Query: 805 EIIFPLYDTSHPHDCI 820 + L HD + Sbjct: 1207 SLSLALKMLEIDHDKV 1222 Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 74/259 (28%), Positives = 131/259 (50%), Gaps = 18/259 (6%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 +++ S A+ +AE + + K+ F + VSHE RTPLT ++ E + P PR E Sbjct: 321 EDERSRAEALAELDRA-KTAFFSNVSHEFRTPLTLLLAPLEEVLAD---PATTPRDRERL 376 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + +R+ +L +VN LLD S+IE+G+ F+PV+L A +L +N + + R Sbjct: 377 DVANRNALRLLKLVNVLLDFSRIEAGRTQAAFQPVNL------ACYTAELASNFRSAMDR 430 Query: 688 TSFANNI------PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 A + + AD+ +++ LN++SNA +T G ++ IS + ++ +L V Sbjct: 431 AGLAYKLDIQPLSQPVYADVEMWEKVVLNLISNAFKYTLEG-EVEISLSE-ADGHAVLAV 488 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RDTG G+ +E F ++ EG+G+GL L + +V + G+ ++ S +G Sbjct: 489 RDTGPGIPEHERAHVFTRFHRVEGVTGRSIEGSGIGLALVRELVRLHGGEVWLKSETGRG 548 Query: 802 TLIEIIFPLYDTSHPHDCI 820 + + PL P D + Sbjct: 549 STFFVRLPLGTAHLPADQV 567 >gi|268679547|ref|YP_003303978.1| PAS sensor protein [Sulfurospirillum deleyianum DSM 6946] gi|268617578|gb|ACZ11943.1| PAS sensor protein [Sulfurospirillum deleyianum DSM 6946] Length = 2035 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 105/354 (29%), Positives = 176/354 (49%), Gaps = 17/354 (4%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNH-Y 512 +I ++TS GI ++ +E +I+ N+ + ++ GY + + L + ++ + + SV + Sbjct: 1186 AIFDSTSVGIVLL-KERLIVQCNKRIDEMLGYKIGEQLNQSTDIWYREIPDYQSVYEQVW 1244 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 E++ + R + TL + LS R I L + + DIS K+ + Sbjct: 1245 HGEVVRFEHRLMRKDGTLFWAR----LSGRAI-DYLDKEKGVVVVVEDISTEKEALEAIQ 1299 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 AK +AE+ + KS FLA +SHEIRTP+ AIIG + + L N + Y ID Sbjct: 1300 RAKSLAEEATQVKSAFLANMSHEIRTPMNAIIGMAHLALQTE---LSNQQR-NYLVKIDS 1355 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 + +L I+ND+LD SKIE+GKM L++ + L + A EK + + Sbjct: 1356 ASKHLLGIINDILDFSKIEAGKMRFESIDFYLEDVMEHLADLSVMKAQEKGLELLFDIET 1415 Query: 693 NIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV--ILRVRDTGVGM 748 NIP L D + QI +N+++NAI FT G ++ + ++V + V DTG+G+ Sbjct: 1416 NIPTALRGDPLRLGQILINLVNNAIKFTAQGEIRLFVKLLAQEAKQVHLLFEVHDTGIGI 1475 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + K + F Q S G+GLGL + K +V+ GK ++ ST +G+ Sbjct: 1476 DEAQQAKLFEAFSQADLSTTREFGGSGLGLAICKHLVEMMQGKIWVKSTLGEGS 1529 >gi|159900574|ref|YP_001546821.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893613|gb|ABX06693.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 885 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 97/365 (26%), Positives = 180/365 (49%), Gaps = 31/365 (8%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNT 505 E EV + +I+ + DG+ + +R G I N A +L + L KP ++ Sbjct: 535 EEEVSRSLAIVRSIGDGVVVGDRVGRIRLINPAAEQLLNIEAAEWLGKPLMSLPGAPESE 594 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 P + + L R T T + + L ++ HDI+ Sbjct: 595 PRLTEKQTYQQFELSGRMIRASSTPVFTSQSEWLGSVVV-------------YHDIT--- 638 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 A ++A++ K++F+A SHE+RTPLT+I G+ +++ GPL + + Sbjct: 639 --------ASELADR---MKTEFVATASHELRTPLTSISGYIDLLMLNTLGPLTEQQR-Q 686 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + + + + + I+NDLLD+S+IESGK+ L +P++LDE + + + + K+I Sbjct: 687 FLSVVKNNIERLNAILNDLLDVSRIESGKVRLQRKPINLDELIQSTVMSIHQQWSGKQIS 746 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + +++P ++AD ++QI N++SNA +T GG+I + ++ + V L V+D+G Sbjct: 747 LALDVPDDLPPMIADPERMRQIVTNLISNAYKYTRDGGRIDVVVSN-GGDSVTLAVKDSG 805 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 VG+ + + F + N + + GTGLGL + K++V+ + GK + S +GT Sbjct: 806 VGIAADDQKHIFTRFFRSENPLKEQAGGTGLGLNITKSLVELHGGKIWFDSEEGRGTTFN 865 Query: 806 IIFPL 810 + P+ Sbjct: 866 VQLPV 870 >gi|307824890|ref|ZP_07655112.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307733937|gb|EFO04792.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 860 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 107/387 (27%), Positives = 186/387 (48%), Gaps = 48/387 (12%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++L+ + GI +G + S NRA L GY ++++ K T L +T V + L Sbjct: 244 TLLDNVAHGIISTAPDGTVTSFNRAAESLLGYTADEVIGKQ-TPALWHDTEEVAQYALH- 301 Query: 516 ILSLDLRQT-LEKITLGSTK------EEK--------------LLSLRIIIKKLPFSSCY 554 LS +L +T L + S + EEK LLS+ + + + + Sbjct: 302 -LSEELGETILPGFAVFSARPRRNLTEEKEWTFIRKNGARVPVLLSVTALRTESGQITGF 360 Query: 555 SLTMHDISEWKQEKNKLSH------------------AKKIAEKESSHKSDFLARVSHEI 596 +D++E KQ +N+L A+ AE + K FLA +SHE+ Sbjct: 361 VGLTYDLTERKQAENELRRHKDQLEETVQQRTADLLLARDAAEAANKAKGLFLAHMSHEL 420 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL I+G++++++ L R N I +S + +++D+LD+S+IE+G+++ Sbjct: 421 RTPLNGILGYAQILQRDE---LVGERKAAALNIIRQSSEYLRALIDDILDLSRIETGRLD 477 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715 +SL + + +V L A +K + A ++P I D R ++Q+ LN+L+NA Sbjct: 478 FVLSNISLAKFLRGVTDIVGLRARQKGLEFSCELAADLPAGIRCDERRLRQVLLNLLTNA 537 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 + FT S GQ+++ V DTG+G+ ELE +PF Q+ + Q+ G GTG Sbjct: 538 VKFTDS-GQVVLRVGRVGPSRFSFAVEDTGIGIEQNELELIFRPFEQVGDLQRRLG-GTG 595 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGT 802 LGL +++ ++ + S KG+ Sbjct: 596 LGLAISRQLMRYLGSDIVVESRVGKGS 622 >gi|291279601|ref|YP_003496436.1| hypothetical protein DEFDS_1212 [Deferribacter desulfuricans SSM1] gi|290754303|dbj|BAI80680.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 1099 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 106/379 (27%), Positives = 203/379 (53%), Gaps = 25/379 (6%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-EQNTPSVMNH 511 +L I E+ + I ++N G ++ N+ ++FGY +++ K ++F+ ++ +N+ Sbjct: 332 RLSMIFESAPNAILLVNENGELILANKRAEEVFGYKENELIGKKLSLFIPDRFRKPYLNY 391 Query: 512 YLTEIL-SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQ- 566 + E+ +++ + I L KE K+L + I I K+ + DI++ K Sbjct: 392 LINEMNDNVNYPIKINDIQL-KNKEGKILYVDISIGKIQNKENKVELIFIIKDITDRKLL 450 Query: 567 EKNKLSHAKKIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 EK +L K+IA +E++ KS+ LA +SHEIRTPL A+ F ++++ +++ + +E Sbjct: 451 EKERL---KRIAAEEANKVKSNLLATISHEIRTPLNAVTTFLDIMEERKYLKTEDKYLLE 507 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y S N++++++ND+LD+SKIESG L +SL + + + S+ + EK++ Sbjct: 508 KTKY---SSNILINLINDVLDLSKIESGNFKLVKNEISLIDLIIKITSIFENSLLEKKLK 564 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--V 741 + ++P +I D + QI +N++ NAI FT +G ++ ++ +++++ L+ V Sbjct: 565 MYIDIPPDVPDKIKTDDLRLSQILINLIGNAIKFTDNGYILLSVNLEKRNDKDIFLKITV 624 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +DTG+G+ ++ PF Q + GTGLGL + K +V+ G I S KG Sbjct: 625 KDTGIGIEEKNIKSIFLPFIQENVGDNKKYGGTGLGLAIVKLIVEKMGGTIKIESKKGKG 684 Query: 802 TLIEIIFPLYDTSHPHDCI 820 + + IF + P +CI Sbjct: 685 S--KFIFDI-----PVECI 696 >gi|52550550|gb|AAU84399.1| two-component hybrid sensor and regulator [uncultured archaeon GZfos9E5] Length = 424 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 132/231 (57%), Gaps = 3/231 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ + K+DFL+ SHE+RTPLT + ++++ G L + + + + R+ + Sbjct: 183 EEVTRMKTDFLSITSHELRTPLTPMKSQLQMLQEGYMGKL-DKKQEKSIEVVLRNLTRLE 241 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++ D+LD+S+IE+G++ L F+ ++L++AV EAI + + +A K I I A +P I+ Sbjct: 242 NLIGDILDLSRIEAGRIKLSFDSMNLNDAVKEAIKMQEAFAKGKNIEISAKLAE-MPNII 300 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 D ++Q N+L+NAI F+ G++II T + V + D G+G++ + +K K Sbjct: 301 GDAERLRQAIGNLLNNAIKFSEKTGKVIIETKRL-GKNVQFSITDYGIGISKADQKKLFK 359 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 PF QI +S GTGLGL + K ++ A+ GK + S KG+ + P Sbjct: 360 PFTQIDSSMGREHVGTGLGLAITKGIIQAHNGKIWAESELGKGSTFYFVIP 410 >gi|307151157|ref|YP_003886541.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306981385|gb|ADN13266.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 634 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 96/332 (28%), Positives = 175/332 (52%), Gaps = 15/332 (4%) Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH-YLTEILSLDL 521 DG+ +++ +G + N+A++KL PV +++ L ++N Y+T + Sbjct: 150 DGVGLLDSKGNFVRCNKAMTKLLDQPVHELIGNSHQDILH----LILNESYMTPFIRA-- 203 Query: 522 RQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579 ++TL++ ++ + K ++ I I+ + + + DI+E KQ + + + ++ Sbjct: 204 KETLQRESIEIESKNKWYNIIIDPILNQHRVLTGAVFIIVDITERKQIEKEREILYEESQ 263 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA-NYIDRSGNLVL 638 + + K +FLA +SHE+R+PL I+G++ ++K +F N I++ I+R+ NL Sbjct: 264 RANRIKDEFLAILSHELRSPLNPILGWASLLKTSKF----NADTIKHGLEIIERNANLQT 319 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++ DLLD+S+I GK+ L+ PV L ++ A+ +VQL A K I I T N+ + Sbjct: 320 RLIEDLLDVSRILRGKLILNTYPVELPSIIASALEIVQLSAKAKSIEIETKIDANVGAVQ 379 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 AD ++Q+ N+LSNAI FTPSGG++ I I + DTG G++ L Sbjct: 380 ADPSRLQQVIWNLLSNAIKFTPSGGKVTIYLERIDKYAQI-TISDTGKGISKEFLPYVFD 438 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 F Q ++ + G GLGL + +V+ + G Sbjct: 439 YFRQADSTTTRKFGGLGLGLAIVHHLVELHGG 470 >gi|262198444|ref|YP_003269653.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262081791|gb|ACY17760.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 830 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 82/241 (34%), Positives = 131/241 (54%), Gaps = 15/241 (6%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A+ A+ + KS FLA +SHE+RTP+ ++G + ++ + P P EY I Sbjct: 295 LETARHAADAANEAKSRFLATMSHELRTPMNGVLGMAGLLLDMGLAP--EPS--EYVETI 350 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG+ +L I+ND+LD SK+E+G L +P SL V EA LV + A +KR+ + Sbjct: 351 RSSGDALLAIINDILDFSKLEAGMFELELQPFSLRSCVEEAFDLVAVSAAKKRLELALRI 410 Query: 691 ANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-------HTSNEEVILRVR 742 A ++P + D+ ++Q+ +N+LSNAI FT G+++I+ + + L VR Sbjct: 411 AEDVPWTVRGDITRLRQVIVNLLSNAIKFTDV-GEVVIAIACAPKIDCQRAGVRLHLSVR 469 Query: 743 DTGVGMTNYELEKAM-KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTGVG+ EL K++ + F Q+ S + GTGLGL + +V G+ ++ S G Sbjct: 470 DTGVGIPA-ELHKSLFRSFSQLDASISRKYGGTGLGLAICARLVALMDGRIWVESEQGAG 528 Query: 802 T 802 Sbjct: 529 A 529 >gi|256829549|ref|YP_003158277.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578725|gb|ACU89861.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 742 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/253 (31%), Positives = 134/253 (52%), Gaps = 9/253 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + + L AK AE S KS+FLA +SHEIRTPL ++G +++++ R P R Sbjct: 355 ERQVAVDALRAAKDAAEDASRSKSEFLANMSHEIRTPLNGVLGMLQLLESGR--PSAEQR 412 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 EY RS N + +++D+LD+S+IES K+ + E ++ + + + + A EK Sbjct: 413 --EYVETAIRSTNRLTRLLSDILDLSRIESNKLVIQEESFAVADVRQSILDIFETPAREK 470 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ----IIISTTHTSNEEV 737 + + IP + D ++QI N++ NA+ FTP G +++S S ++ Sbjct: 471 GVRLEVRVDPRIPAHLFGDEARLRQILFNLVGNAVKFTPKGQVAVNFVLVSAAGESTCQI 530 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V+D+GVG+ + L+ +PF Q+ S +G GLGL + + +VD G+ I ST Sbjct: 531 RFTVQDSGVGIPSERLKDIFEPFIQVDGSCVRSHQGAGLGLAIVRRLVDLMHGQLQIQST 590 Query: 798 PAKGTLIEIIFPL 810 +GTL+ + P Sbjct: 591 QGEGTLVGVTLPF 603 >gi|329848033|ref|ZP_08263061.1| response regulator [Asticcacaulis biprosthecum C19] gi|328843096|gb|EGF92665.1| response regulator [Asticcacaulis biprosthecum C19] Length = 1140 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 136/255 (53%), Gaps = 5/255 (1%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + Q K+++ + E+ S +KSDFLA +SHE+RTPL + + ++++ + G L + Sbjct: 446 DLSQAKDEVDRKARELEQSSRYKSDFLANMSHELRTPLNSSLILAKLLSDNSEGNLTEEQ 505 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +E+A I SGN +L ++ND+LD+SKIE+G+M +H E VSL S+ + AN+K Sbjct: 506 -VEFAQTIQSSGNDLLALINDILDLSKIEAGQMEIHTESVSLKRLASDMERVFTPIANQK 564 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 R+ + +P + D + ++Q+ N+LSNA FT G + + ++ V Sbjct: 565 RLKMTARLGEGVPETVTTDRQRLEQVLKNLLSNACKFTEHGH--VELAILKDGDRIVFAV 622 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +DTG+G++ + + F Q + + GTGLGL +++ + G + S +G Sbjct: 623 KDTGIGISAEHQHQVFEAFRQADGTISRKYGGTGLGLSISRELSRLLGGNLSVISQVDRG 682 Query: 802 TLIEIIFPL-YDTSH 815 + + PL YD Sbjct: 683 STFSLSIPLVYDAGQ 697 >gi|330802602|ref|XP_003289304.1| hypothetical protein DICPUDRAFT_153663 [Dictyostelium purpureum] gi|325080602|gb|EGC34150.1| hypothetical protein DICPUDRAFT_153663 [Dictyostelium purpureum] Length = 1824 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 90/276 (32%), Positives = 148/276 (53%), Gaps = 22/276 (7%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ D++ +++ +L K+ AE+ + KS F+A VSHE+RTPL+ +IG S+++ Sbjct: 1113 TLRDMTS-RKDMQRLIFEKEAAEEANKAKSAFVATVSHEVRTPLSGVIGVSDLLLETNL- 1170 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + +Y I +S +L I+ND+LD SK+ES ++ + P S+ E I ++ Sbjct: 1171 ---SEEQRDYVQTIQKSSQALLTIINDILDYSKLESRQLKMETLPFSIIETCQAVIHMLS 1227 Query: 677 LYAN-EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----- 729 + AN E IL+R N+P+I+ D ++Q+ LN+LSNAI FT S G I+ Sbjct: 1228 VAANDEVDILLRV--PPNVPKIVFGDAMRIRQVLLNLLSNAIKFT-SRGHILTDISVDES 1284 Query: 730 --THTSNEEVI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 T S E++I + + DTG+G+ + +PF Q NS + GTGLGL + K + Sbjct: 1285 VPTSNSEEDIIHLCITIEDTGIGIPQSLFDSIFEPFSQADNSTTRKYGGTGLGLSITKRL 1344 Query: 785 VDANM-GKFYIFSTPAKGTLIEIIFP-LYDTSHPHD 818 ++ M G + S +G+ + I P L + P D Sbjct: 1345 IEEVMGGTIQVSSIVNQGSTFKCIIPFLLPNTSPSD 1380 >gi|300867491|ref|ZP_07112142.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300334485|emb|CBN57310.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1231 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 82/265 (30%), Positives = 142/265 (53%), Gaps = 27/265 (10%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 +++ +++ +L AK+ A+ +S KS+FLA +SHE+RTPL AI+GFS+++ R + Sbjct: 723 LAQTQKQAAELKIAKESADAANSAKSEFLANMSHELRTPLNAILGFSQLMNRDRSL---S 779 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 YI+Y N I+RSG +L+++ND+L++SKIE+G+M L+ L + ++QL A Sbjct: 780 TEYIQYLNIINRSGEHLLELINDILEMSKIEAGRMVLYENEFDLYNLLDNLEDMLQLKAQ 839 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEE 736 K + + +P+ + D ++QI +N++ NA+ FT G I+ ++ SN E Sbjct: 840 SKALKLTFQRDKTVPKFVKTDQSKLRQILINLIGNALKFTEKGNVILRVKVAGRERSNNE 899 Query: 737 -------------------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 + V DTG G+ + +K + FGQ + G+GTGLG Sbjct: 900 QKENTNIPSSFFLLPSSFFLQFEVEDTGPGIAPEDFDKLFEAFGQTATGLK-SGQGTGLG 958 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGT 802 LP+++ V G+ + S +G Sbjct: 959 LPISQKFVQLMGGEITVSSQLGQGA 983 >gi|288941215|ref|YP_003443455.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288896587|gb|ADC62423.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 905 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 131/238 (55%), Gaps = 8/238 (3%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +LS A+ AE + KS FLA +SHEIRTP+ AIIG + +++++ + +PR ++ Sbjct: 509 QELSEARDAAEAANRAKSAFLANMSHEIRTPMNAIIGLNHLLQHE----VTDPRAHDWLT 564 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + + +L I++D+LD+SKIE+G + L S + SL+ A +K + + Sbjct: 565 KVGEAAAHLLRIIDDILDLSKIEAGHLTLETGEFSPRNLIERTFSLLGDRARQKGLRLHA 624 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDT 744 + A ++P ++ D ++QI LN +SNAI F+ G + + T + E + L V D Sbjct: 625 AIAPDVPESLVGDALRLQQILLNFVSNAIKFSEQGEIRVRAWTQAEDAEWMRLHLDVADQ 684 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G+T + + +PF Q S R GTGLGL +A+ + + G+ + S P +G+ Sbjct: 685 GIGLTAEQQARLFQPFAQGDESTTRRYGGTGLGLAIARRLANLMQGEVGVVSEPGRGS 742 >gi|157376076|ref|YP_001474676.1| putative PAS/PAC sensor protein [Shewanella sediminis HAW-EB3] gi|157318450|gb|ABV37548.1| putative PAS/PAC sensor protein [Shewanella sediminis HAW-EB3] Length = 1169 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 97/358 (27%), Positives = 180/358 (50%), Gaps = 13/358 (3%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF--TVFLE---QNTPSV 508 L + LEA+ D + I+ G I N A KLFG+ E L + +F++ +N Sbjct: 363 LLATLEASQDALITIDITGRIQEFNDAACKLFGHKREQALGELLEDLIFVDIEKKNFKQG 422 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568 + + +++++E +++ + +++I +L + +HDIS+ + + Sbjct: 423 IQLFRQTGEGPAIKKSIEMMSVKRDGSSFPVEMKMIPVQLGEEILLTAFVHDISKRIEYE 482 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L AK AE S KS FLA +SHEIR+PL A++G E++ + + N YA+ Sbjct: 483 TQLKQAKDQAESGSKAKSRFLATMSHEIRSPLNAVLGSVELMLDSKL----NKEQRIYAH 538 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 +G +L +ND+LD SKIE+G+M L S + V++ + ++ A+EK I + Sbjct: 539 TAKEAGTALLSTINDILDFSKIEAGQMMLESVSFSPAKIVAQVLRILAPNAHEKGINLAC 598 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDT 744 N+P ++ D + ++Q+ N++ NAI F+ G ++ I +H ++ V D Sbjct: 599 FINRNVPELVKGDPQRLRQVIHNLVDNAIKFSSGGCVSVEMWIPDSHHEEVQLYCAVTDE 658 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G++ +K K F Q+ + +G+GLGL + +++ GK + S G+ Sbjct: 659 GIGVSMAAQKKLFKEFSQVHDQHNTNYKGSGLGLAICAELIEMMGGKIELSSRLGHGS 716 Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 35/59 (59%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 N+ +E +L +ILE DG I++ G+I N AV +LF Y +++++ + ++F+ Sbjct: 226 NRSDLESANTRLSTILETAVDGFIIVDTSGVITQVNSAVCRLFEYELDELIGENVSIFM 284 >gi|317484596|ref|ZP_07943500.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] gi|316924136|gb|EFV45318.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] Length = 670 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 91/267 (34%), Positives = 142/267 (53%), Gaps = 10/267 (3%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DI+E KQ + L A + AE + KS FLA +SHE+RTP+ AIIG S + Sbjct: 257 VADITEHKQHEASLRMAAEAAEAANRAKSSFLANMSHELRTPMNAIIGLSYLALKT---D 313 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 L +Y EY + I S +L I+ND+LD++K+E+ K+ L P +L + + ++V Sbjct: 314 LTTQQY-EYISRISESSTALLGILNDILDLTKVEANKLELARTPFNLKKELGILAAVVLP 372 Query: 678 YANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE 735 A K + A ++P +L D V+Q+ LN+ +NA+ FT G + + ++N Sbjct: 373 EAEGKGLEFSLEIAPDVPLLLMGDALRVRQVLLNLCNNAVKFTDEGSVSLRVRVVDSTNT 432 Query: 736 EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 V L VRD G+G+ E+ + PF Q+ S R GTGLGL ++K +V+ G Sbjct: 433 RVRLEFVVRDCGIGIPESEIGRIFSPFMQVDESATRRFGGTGLGLAISKRLVELMGGTLT 492 Query: 794 IFSTPAKGTL--IEIIFPLYDTSHPHD 818 + S KG+ +E+ FPL + P D Sbjct: 493 VGSRVNKGSTFRVELAFPLAEDVPPGD 519 >gi|75910023|ref|YP_324319.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75703748|gb|ABA23424.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1297 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 86/275 (31%), Positives = 146/275 (53%), Gaps = 13/275 (4%) Query: 550 FSSCYSLTMHD----ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 F SC + HD I E Q + A+ E+ + K DFLA VSHE+R+PL I+G Sbjct: 885 FGSCTDI--HDQKLAIEERAQAWEQERAARIELERANRMKDDFLAIVSHELRSPLNPILG 942 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 +++++K+++ L + +E I+R+ L +++DLLD+S+I GK++L+ V L Sbjct: 943 WAKLLKSRKLDALKTNQALEV---IERNAKLQAGLIDDLLDVSRILRGKLSLNVCTVDLV 999 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + A+ V+L A K I I+T ++ R+ D ++Q+ N+LSNA+ FTP GG+I Sbjct: 1000 TTIEAALETVRLTAESKSIHIQTDLTASVCRVEGDPNRLQQVVWNLLSNAVKFTPEGGEI 1059 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + + I +VRDTG G++ L + F Q + G GLGL + + +V Sbjct: 1060 EVKLERVGSLAHI-QVRDTGKGISLDFLPYVFERFRQADEVTTRKFGGLGLGLAIVRHLV 1118 Query: 786 DANMGKFYIFSTPAK--GTLIEIIFPLYDTSHPHD 818 + + G + ++P + GT + PL S ++ Sbjct: 1119 ELHGGSVQV-TSPGEGLGTTFTVKLPLVAVSQIYE 1152 >gi|159127382|gb|EDP52497.1| sensor histidine kinase/response regulator, putative [Aspergillus fumigatus A1163] Length = 2333 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 81/256 (31%), Positives = 134/256 (52%), Gaps = 23/256 (8%) Query: 567 EKNKLSHAKKIAEKESSH-----------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + H K+AE E+ H KS FLA +SH++RTP+ +IG SE++K Sbjct: 1859 QAREAEHKAKVAEAEAKHNVKLKEDAARAKSIFLANISHDLRTPMNGVIGLSELLK---- 1914 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G + + EY I + +L ++ND+LD SK+E+GKM + P+++ E +SE + + Sbjct: 1915 GTILSKEQDEYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNVKETISEVVRAL 1974 Query: 676 QLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQII---IST 729 + Y + R L+ + +P +L D + QI +N+LSN+ FTP G + +S Sbjct: 1975 R-YTHRDRGLVTIEDLDKVPPDLVVLGDPVRLHQIFMNLLSNSYKFTPKGSITVRAKVSR 2033 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DAN 788 + + V DTG+G+ + + KPF Q +S G+GLGL + KA++ D Sbjct: 2034 EGKNRVRLECAVSDTGIGIPEEQKSRLFKPFSQADSSTARSYGGSGLGLSICKAIIEDVL 2093 Query: 789 MGKFYIFSTPAKGTLI 804 G ++ STP GT + Sbjct: 2094 GGAIWLDSTPGVGTTV 2109 >gi|90415044|ref|ZP_01223004.1| hypothetical protein P3TCK_19810 [Photobacterium profundum 3TCK] gi|90323858|gb|EAS40464.1| hypothetical protein P3TCK_19810 [Photobacterium profundum 3TCK] Length = 697 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 79/258 (30%), Positives = 136/258 (52%), Gaps = 7/258 (2%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y T DI+ KQ +L A+K AE ++ KS+FLA +SHEIRTPL A++G + + + Sbjct: 298 YRGTAKDITHRKQRLVELQLARKQAETANNAKSEFLAMMSHEIRTPLNAVLGLMDTLVDS 357 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + + +E+ + +++S L+L I+ND+LD+S+IESGK L + + ++++ ++ Sbjct: 358 GL----DEKQMEWVSQMEQSAQLLLTIINDILDLSRIESGKFELFNADIHIADSINLVVN 413 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + A K I + T ++P +L D + Q+ N++ NAI FT G + + Sbjct: 414 QLNEQAKRKNITLTTQIDASVPDSMLGDKNRIAQVMFNLIGNAIKFTNVGS--VRVSVKA 471 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 N + + V DTG+G+ Y + PF Q S R GTGLGL ++ ++ G Sbjct: 472 VNNNIEIAVIDTGIGIAPYAQKTLFNPFIQADGSITRRYGGTGLGLAISMHLIKKMDGNI 531 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S G+ + P+ Sbjct: 532 SLDSVLNVGSCFTVSIPI 549 >gi|119490613|ref|ZP_01623018.1| putative sensory histidine kinase protein [Lyngbya sp. PCC 8106] gi|119453778|gb|EAW34935.1| putative sensory histidine kinase protein [Lyngbya sp. PCC 8106] Length = 663 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 94/277 (33%), Positives = 142/277 (51%), Gaps = 26/277 (9%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DI++ K + +L AK+ AE + KS+FLA +SHE+RTPL AIIG+S++++ Sbjct: 370 VRDITDNKLAQIELQQAKEAAEAANQAKSEFLASMSHELRTPLNAIIGYSDLLREDA-ED 428 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 G ++ I SG +L ++ D+LDISK+ESG+MNL+ E + ++E +++Q Sbjct: 429 YGYTDFVPDLEQIKSSGLHLLSLIQDILDISKLESGEMNLYLEHFDIATLINEVQAIIQP 488 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-------- 729 N+ + + I + AD VKQ LN+LSNA FT G + T Sbjct: 489 LVNQNQNQFKIDCVQPIGSMYADRTKVKQALLNLLSNAAKFTKEGTVTLKVTRTLFPLQN 548 Query: 730 --THT---------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 TH+ S + V V DTG+GMT ++EK PF Q NS + Sbjct: 549 GQTHSDPKSINHSHHSEKRLSEDWVTFSVEDTGIGMTPEQVEKIFDPFVQADNSTTKQYG 608 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL +++ + MGK + ST G+ I P Sbjct: 609 GTGLGLSISQRFCEMMMGKITVESTIKVGSTFSIKLP 645 >gi|114777667|ref|ZP_01452627.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans PV-1] gi|114551883|gb|EAU54417.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans PV-1] Length = 1427 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 106/382 (27%), Positives = 185/382 (48%), Gaps = 17/382 (4%) Query: 442 INKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTV 499 I++RK + +++ S++ A +D G+ + + I N + + GY ++++ RKP Sbjct: 628 ISERKQIEDELRMMSLVAAETDNGVVVTGLDQKIKWVNPGFTDITGYDFDEVIGRKPGDF 687 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFSSCYSLTM 558 T L + R + G E +L + I+ I+ + + Sbjct: 688 LHGPKTEQDAVSCLGTAIRKQERVATDITNYGKNGEPYILHIEIMPIRDESGEVVEFIAL 747 Query: 559 H-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 +++E ++ ++ AK+ AE + KS FLA +SHEIRTPL ++G +++++ R Sbjct: 748 ESNVTEQRRADKEIKEAKEAAELANRAKSSFLAAMSHEIRTPLNGVVGTIDLLEHTRLES 807 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 N R + S ++ I++D+LD SKIE+GK+ L PVSL V + +Q Sbjct: 808 --NQR--DMVRTARDSSLTLMGIIDDVLDFSKIEAGKLELDDAPVSLQRVVEGCVESMQP 863 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP---SG--GQIIISTTHT 732 A + I + IP ++ DL ++QI LN+ NAI F+ SG G++ +S Sbjct: 864 LAAKNNIELLVFCEPAIPEVMGDLVRLRQILLNLTGNAIKFSAGLKSGRQGRVEVSAALE 923 Query: 733 SNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 S EE + L V+D G+GM+ EK +PF Q +S R GTGLGL +++ +V+ Sbjct: 924 SVEEQDVKIRLSVKDNGIGMSADAQEKLFRPFVQAESSTTRRFGGTGLGLAISRRLVEMM 983 Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810 G + S +G + + Sbjct: 984 GGHIEVESRLDQGACFSVALTM 1005 Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 69/142 (48%), Gaps = 12/142 (8%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 +R+++ +L +++E T D + +IN GII S N AV K+FGY ++L ++ + Sbjct: 377 GRRRVQETQNRLSAVVEHTVDSVVVINHLGIIESVNPAVEKVFGYQASELLGNNVSMLMP 436 Query: 503 QNTPSVMNHYLTEIL-SLDLRQTLEKITLGSTKEE-----KLLSLRIIIKKLPFSSC--Y 554 + V N Y++ + S D R I +G E L + + + S + Sbjct: 437 EPHRGVHNDYISRFMDSGDAR----VIGIGREVEAIRSDGSLFPAELTVSRFELDSGTHF 492 Query: 555 SLTMHDISEWKQEKNKLSHAKK 576 + T+ D+++ K+ + +L +K Sbjct: 493 AGTLRDLTQRKKAEAELEAERK 514 >gi|87121408|ref|ZP_01077297.1| Serine/Threonine protein kinase and Signal Transduction Histidine Kinase (STHK) with GAF sensor [Marinomonas sp. MED121] gi|86163251|gb|EAQ64527.1| Serine/Threonine protein kinase and Signal Transduction Histidine Kinase (STHK) with GAF sensor [Marinomonas sp. MED121] Length = 2241 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 88/258 (34%), Positives = 136/258 (52%), Gaps = 18/258 (6%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 YS + I+E +E L+ A+ A K + KS+FLA +SHEIRTP+ +IG S+++ Sbjct: 1467 YSTLENRITERTRE---LNQARLTAIKANQSKSNFLANMSHEIRTPMNGVIGLSQLLLKT 1523 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + + YA S N +L I+ND+LD SKIE GKM L P +L++ V + Sbjct: 1524 NL----DNKQKNYAKKTLESANSLLTIINDILDFSKIEVGKMTLEEAPFNLEQLVKRVTT 1579 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + +L A+ K + + + NIP ++ D ++QI LN+ SNA+ FT SG II + Sbjct: 1580 ICELRAHTKDLELIVDISPNIPFNLIGDALRLEQILLNLTSNAVKFTKSGHVII--RVQS 1637 Query: 733 SNEEVI--------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 NE I + V DTG+G++ + + F Q +S GTGLGL + K + Sbjct: 1638 LNEVEIDDMHVQLNIEVEDTGIGISEQQCALLFESFTQANDSITREFGGTGLGLAICKQL 1697 Query: 785 VDANMGKFYIFSTPAKGT 802 V+ G+ + S P G+ Sbjct: 1698 VELMQGQIQVRSQPNIGS 1715 >gi|70999294|ref|XP_754366.1| sensor histidine kinase/response regulator [Aspergillus fumigatus Af293] gi|66852003|gb|EAL92328.1| sensor histidine kinase/response regulator, putative [Aspergillus fumigatus Af293] Length = 2333 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 81/256 (31%), Positives = 134/256 (52%), Gaps = 23/256 (8%) Query: 567 EKNKLSHAKKIAEKESSH-----------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + H K+AE E+ H KS FLA +SH++RTP+ +IG SE++K Sbjct: 1859 QAREAEHKAKVAEAEAKHNVKLKEDAARAKSIFLANISHDLRTPMNGVIGLSELLK---- 1914 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G + + EY I + +L ++ND+LD SK+E+GKM + P+++ E +SE + + Sbjct: 1915 GTILSKEQDEYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNVKETISEVVRAL 1974 Query: 676 QLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQII---IST 729 + Y + R L+ + +P +L D + QI +N+LSN+ FTP G + +S Sbjct: 1975 R-YTHRDRGLVTIEDLDKVPPDLVVLGDPVRLHQIFMNLLSNSYKFTPKGSITVRAKVSR 2033 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DAN 788 + + V DTG+G+ + + KPF Q +S G+GLGL + KA++ D Sbjct: 2034 EGKNRVRLECAVSDTGIGIPEEQKSRLFKPFSQADSSTARSYGGSGLGLSICKAIIEDVL 2093 Query: 789 MGKFYIFSTPAKGTLI 804 G ++ STP GT + Sbjct: 2094 GGAIWLDSTPGVGTTV 2109 >gi|237798963|ref|ZP_04587424.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806199|ref|ZP_04592903.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021817|gb|EGI01874.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027312|gb|EGI07367.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. oryzae str. 1_6] Length = 917 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR +Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQFDYLAT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ + + Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 + P L+ D ++QI N++SNAI FT G + + EE + + V+DTG Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|330895938|gb|EGH28222.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 993 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 85/263 (32%), Positives = 138/263 (52%), Gaps = 10/263 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ--RFGP 617 DI+E KQ + +L A ++A++ + KS FLA +SHEIRTP+ AIIG E+ Q R G Sbjct: 692 DITERKQLEQQLQEAMRLADQANEAKSAFLASMSHEIRTPMGAIIGLLELECEQALRLGK 751 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + + + ++ A+ RS ++ ++ + LD+++IE+G M L SL I L Sbjct: 752 IPS-QGLQVAH---RSATELVALIGESLDLARIEAGGMQLSLAVTSLQGLFDGVIELFSA 807 Query: 678 YANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNE 735 A EK + +R F+ D ++Q+ N+L NA+ FT G ++ + TH S E Sbjct: 808 QAGEKGVELRLEFSGQARGDYWLDPFRLRQVLHNVLGNALKFTRQGAVVVTLDVTHDSPE 867 Query: 736 EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +R ++D+G G+ ++ +PF Q + G+GLGL + + +V+ G Sbjct: 868 STRVRIGIQDSGEGIDPQRQQQVFQPFTQASDDTAAHYGGSGLGLSITRQLVELMKGDIS 927 Query: 794 IFSTPAKGTLIEIIFPLYDTSHP 816 + S P KGTL+ I PL S P Sbjct: 928 LHSEPGKGTLVTIDLPLTRVSEP 950 >gi|262195776|ref|YP_003266985.1| histidine kinase [Haliangium ochraceum DSM 14365] gi|262079123|gb|ACY15092.1| histidine kinase [Haliangium ochraceum DSM 14365] Length = 397 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 84/269 (31%), Positives = 144/269 (53%), Gaps = 12/269 (4%) Query: 551 SSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 S+ +S M H+ +E + +L A + ++ KS FLA VSHE+RTPLT++IG++E+ Sbjct: 115 STMHSEAMEHNYAELTAKNERLEQAVEHMQEVDRVKSSFLATVSHELRTPLTSVIGYAEM 174 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + GPL N +Y I + +L ++ LL+ S +ESG + + EP+ +++ + Sbjct: 175 LFEGLAGPL-NKEQRDYLQTILSKADQLLQLITALLETSILESGPVPIQHEPLDMNQIIE 233 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 +S + A + I +R ++PRIL D R ++Q+ +++NA+ FT +I I Sbjct: 234 RVLSSLGPQARARTIEVR-PIPADLPRILGDARRMRQVLRALIANAVKFTTERARIDIEV 292 Query: 730 -----THTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 + ++E V + V D G+G+ + E +PF Q+ +S R GTGLGL L Sbjct: 293 RVAPLSRYADEGDTPGVRVVVADAGIGIPLEDQESIFEPFFQVDSSSTRRYGGTGLGLTL 352 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 AK+ ++AN G ++ S P +G P Sbjct: 353 AKSYIEANGGHIWVESAPGEGASFTFTVP 381 >gi|325107448|ref|YP_004268516.1| PAS/PAC sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324967716|gb|ADY58494.1| PAS/PAC sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 1168 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 130/232 (56%), Gaps = 4/232 (1%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S KS+FLA +SHEIRTPLTAIIG++E++++ + N I +G +L I+ Sbjct: 763 SHSKSEFLANMSHEIRTPLTAIIGYAEILRDDPEIAESPEKRSHALNTIHEAGRHLLTII 822 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILAD 700 +D+LD+SKIE+GKM++ S+ +S+ S ++ A K + + T A IP RI +D Sbjct: 823 SDILDLSKIEAGKMSIEQTDTSVANVLSQVESFLRPRAVGKGLSLTTRLAQAIPDRIQSD 882 Query: 701 LRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMK 758 ++QI +N++ NAI FT +G Q+ +S ++E + + DTG GMT+ + E+ + Sbjct: 883 PTRLRQILMNLVGNAIKFTEAGHIQLTVSRIQREDKEFLQFDIEDTGTGMTDTQREQIFQ 942 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY-IFSTPAKGTLIEIIFP 809 F Q S + GTGLGL + + + G + ++S +GT P Sbjct: 943 AFSQADTSVTRQYGGTGLGLVICRRLARLMNGDVWLLWSEAGRGTCFRAALP 994 Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 3/64 (4%) Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKP 496 + ++N R+ E++ + L + T++G+ I N G + N S+L GY ++D+L RKP Sbjct: 364 AELKLNGREQEVQRLAL--VARQTTNGVVITNSSGQVEWVNEGFSRLTGYTLDDLLGRKP 421 Query: 497 FTVF 500 +V Sbjct: 422 GSVL 425 >gi|254442095|ref|ZP_05055571.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198256403|gb|EDY80711.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 536 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 83/263 (31%), Positives = 139/263 (52%), Gaps = 11/263 (4%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 + I ++ K+ L + K AE S KS+FLA +SHE RTP+ IIG E++KN+ P Sbjct: 136 YAIERYRLAKD-LENEKLKAEAASKAKSEFLAVMSHEFRTPMNGIIGGLEILKNE---PA 191 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 G+ E + + L+++ND+LD+SKIES + L PV L + ++ + + Sbjct: 192 GDSSR-EIQSMMRECAFNQLELINDVLDLSKIESNSVELEIGPVCLSDVITSTMGTLGFK 250 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A K I + + ++P +D R ++QI LN++ NA+ FT SG ++ + T + + Sbjct: 251 AESKSIKLESFVDPSVPNSFRSDARRIRQILLNLVGNAVKFTDSG-EVKLKVTSSLGGML 309 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V DTG+G+ +++K + F Q+ S Q R +GTGLGL + K + G+ + S Sbjct: 310 EFTVTDTGIGIAEADIKKVFESFSQVDGSYQRRYQGTGLGLTICKRLTRILGGEIRVESQ 369 Query: 798 PAKGTLIEIIFPLYDTSHPHDCI 820 G+ + P+ PH+ I Sbjct: 370 LGVGSKFSVTIPI----EPHENI 388 >gi|110834488|ref|YP_693347.1| sensor/response regulator hybrid [Alcanivorax borkumensis SK2] gi|110647599|emb|CAL17075.1| sensor/response regulator hybrid [Alcanivorax borkumensis SK2] Length = 930 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 83/237 (35%), Positives = 137/237 (57%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A K S KS+FLA +SHEIRTPL IIGF++++ PL + R EY + Sbjct: 276 ELDMARKEALKASHIKSEFLANMSHEIRTPLNGIIGFTKLLHR---SPL-SARQEEYLST 331 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I +S +L I+ND+LD SKIE+GK++L P++L + + + +L+ A E+ + + Sbjct: 332 IHKSAESLLAIINDVLDFSKIEAGKLSLDHTPLNLHDLIEDVQTLLAPMAQERGLEQASI 391 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVILR--VRDTG 745 +++P +L D ++Q+ N+LSNAI FT G ++ + E I++ V DTG Sbjct: 392 IYSDVPVALLGDPLRIRQVLTNLLSNAIKFTDHGSVVVRAMLEEDRGAEAIIKITVTDTG 451 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G++ + + F Q S + + GTGLGL ++K +V++ G+ I S +G+ Sbjct: 452 HGLSQENQKNLFRAFTQTDQSARRQEGGTGLGLAISKRLVESMGGEIGIESCEERGS 508 >gi|332702019|ref|ZP_08422107.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552168|gb|EGJ49212.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 522 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 137/256 (53%), Gaps = 9/256 (3%) Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 +SLT D++E + + L +++ AE+ S KS+FLA +SHE+RTPL ++G +E+ Sbjct: 119 AFSLT--DVTERVRTELALRRSEQEAEEASRAKSEFLASMSHELRTPLGGVLGMTELALM 176 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 P R Y + RSG + D+VNDLLD+S+IE+ K+ L L ++ A+ Sbjct: 177 SE--PSAAVRT--YLQMVLRSGQALRDLVNDLLDLSRIEARKLELESVDFDLRAELALAL 232 Query: 673 SLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + L A + +R S A +P ++ D ++Q+ N++SNA+ FT GG + + Sbjct: 233 DPLILDARANGLCLRHSVAPAVPAMVRGDSGRLRQVITNLVSNALKFTEQGGITVAVESD 292 Query: 732 TSNEEVILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 T+ +LR R DTG+G+ +LE F Q+ + G GLGL + + +VD Sbjct: 293 TTGAPDLLRFRVTDTGIGIAADQLEAVFDTFRQLRDKDGRTRGGMGLGLAICRRLVDLMG 352 Query: 790 GKFYIFSTPAKGTLIE 805 G+ + S P KG+ + Sbjct: 353 GRLWAESEPGKGSCFQ 368 >gi|189426004|ref|YP_001953181.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189422263|gb|ACD96661.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1127 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 134/249 (53%), Gaps = 12/249 (4%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 SE + +L+ A+ AE S KS+FLA +SHEIRTP+ AI+G + + Sbjct: 507 SELTRLNEELARARDTAEGASRSKSEFLANMSHEIRTPMNAILGLVHLALQTDL----SH 562 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + EY + + S +L I+ND+LD+SKIE+G++ + SL+ V+ ++L+ + A E Sbjct: 563 KQREYLDTVSNSAQSLLGIINDILDVSKIEAGRLQIEKTNFSLEGVVTRTLALLSIKARE 622 Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIIST--THTSNE 735 K I + +IP ++ D ++Q+ +N+L NA+ FT SG QI T + ++ Sbjct: 623 KGINLEQQVDTSIPDALVGDPLRLEQVLVNLLGNAVKFTDSGTVTLQIRRGTEPRDSDSD 682 Query: 736 EVILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E+ L + DTG GM L + KPF Q S GTGLGL + + +V+ G Sbjct: 683 EITLEISITDTGAGMDEQTLGRLFKPFSQGDTSTTRTHGGTGLGLTICRHLVEMMGGTIT 742 Query: 794 IFSTPAKGT 802 + S+P +G+ Sbjct: 743 VTSSPGQGS 751 >gi|56965855|ref|YP_177589.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16] gi|56912101|dbj|BAD66629.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16] Length = 612 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 105/371 (28%), Positives = 177/371 (47%), Gaps = 44/371 (11%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQNTPSV 508 E +L S+L +DG+ ++ G+I+ NR +L G P++ +LR+P V + S+ Sbjct: 266 EQKRLRSVLAHMTDGVIATDQSGLIILMNRRAEELLGIPLKHVLRRPIMNVLRMEEEVSI 325 Query: 509 MNHY-LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL-----PFSSCYSLTMHDIS 562 Y E L LDL ST EE ++ L + + PF+ ++ +HD++ Sbjct: 326 FELYERNEPLLLDL----------STGEEPIM-LEVNFSAIQEDEGPFNGLIAV-LHDVT 373 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN-- 620 E EK + + +F+A VSHE+RTPLT + + E + + G + + Sbjct: 374 E--------------KEKIENERREFVANVSHELRTPLTTMKSYLEALAD---GAMQDED 416 Query: 621 --PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 PR++E + + ++ +VNDLL +SKI+S L V L + + ++ Sbjct: 417 IAPRFLEVTQ---KETDRMIRLVNDLLQLSKIDSNDYRLDLHWVELGAFLHSIVERFEMV 473 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +K I A + D + Q+ NILSNAI ++PSGG + I+ H N+ I Sbjct: 474 VKDKNIDFHRHIAKQPTYVKIDTDKMTQVLDNILSNAIKYSPSGGNVTITLLHQGNKARI 533 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + D G+G+ +K + F ++ ++ GTGLGL +A V A+ G ++ S Sbjct: 534 -SIADEGLGIPAESQDKIFERFYRVDKARARNVGGTGLGLAIASEYVHAHEGDIWVHSEY 592 Query: 799 AKGTLIEIIFP 809 +GT I I P Sbjct: 593 NEGTTIYITLP 603 >gi|291568252|dbj|BAI90524.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 1494 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 83/250 (33%), Positives = 132/250 (52%), Gaps = 23/250 (9%) Query: 566 QEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + KN+ L AK AE S KS+FLA +SHEIRTP+ A+IG + ++ + P Sbjct: 712 EAKNQALEEAKLAAEIASRAKSEFLATMSHEIRTPMNAVIGMTGLLLDMEL----TPEQR 767 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 ++ I SG+ +L I+ND+LD SKIESGK+ L +P L + E + L+ A EK + Sbjct: 768 DFVETIRTSGDALLTIINDILDFSKIESGKLELEKQPFKLRNCLEECLELLSGRAAEKGL 827 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVI---- 738 + + P+ IL D+ ++Q+ +N++SNAI FT G I+ + TH ++ + Sbjct: 828 ELAYIIDPSTPKTILGDVTRLRQVLVNLVSNAIKFTSEGEVILAVKATHPDAKKDVKKFD 887 Query: 739 ------------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 VRDTG+G+ +++ K F Q+ S GTGLGL +++ + Sbjct: 888 DSDFTESHYVLQFEVRDTGIGIPPDRIDRLFKAFSQVDASTTREYGGTGLGLAISQRLSQ 947 Query: 787 ANMGKFYIFS 796 GK ++ S Sbjct: 948 LMNGKMWVAS 957 >gi|292899966|ref|YP_003539335.1| two-component system, sensor kinase and response regulator [Erwinia amylovora ATCC 49946] gi|291199814|emb|CBJ46937.1| two-component system, sensor kinase and response regulator [Erwinia amylovora ATCC 49946] Length = 956 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 87/264 (32%), Positives = 140/264 (53%), Gaps = 11/264 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG +++K + P G Sbjct: 447 DVSARVKMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTKAL-PAG 505 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + N S +L+L I++D+LD SKIES ++ + S E ++ + A Sbjct: 506 ADSLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLAMA 562 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +KR+ + +++P +L D ++Q+ N+L+NAI FT +GG II + + + Sbjct: 563 VKKRLTLWCFIDSDVPVLLEGDPMRLQQVISNLLNNAIKFTHTGG--IILQAYVKGDYLA 620 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 RVRD+GVG+ E+ + PF Q+ + Q +GTGLGL + + +++ G + S P Sbjct: 621 FRVRDSGVGIPAKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLMNMMDGDIEVESEP 680 Query: 799 AKGTLIEIIFPLYD----TSHPHD 818 G+ I PLY+ T P D Sbjct: 681 GMGSQFIIRIPLYNSRVVTLEPRD 704 >gi|120555156|ref|YP_959507.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] gi|120325005|gb|ABM19320.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] Length = 956 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 92/263 (34%), Positives = 145/263 (55%), Gaps = 17/263 (6%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYAN 628 +L A+K A + S KS+FLA +SHEIRTPL IIGF+E++ PL PR ++ N Sbjct: 277 ELDFARKEALEASRIKSEFLANMSHEIRTPLNGIIGFTELLLK---SPL--PRQQRDHLN 331 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +S ++L I+ND+LD SKIE+GK+ L P L + V E + ++ A+ K + + Sbjct: 332 TIRKSSEILLTIINDILDFSKIEAGKLILDRVPFQLRDIVEEVMVMLAPAAHAKNLDLVP 391 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVILR--VR 742 N++P I+ D VKQ+ N+++NAI FT +G ++ ++ T + V LR + Sbjct: 392 LVYNDVPDNIMGDPLRVKQVITNLVNNAIKFTQTGEVVLRASLEDEDTEHNRVTLRLSIT 451 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG- 801 D+GVG++ + + F Q S + GTGLGL ++K +V+ GK + S KG Sbjct: 452 DSGVGLSRAQQQSLFNAFSQADASTARQYGGTGLGLAISKRLVEEMGGKIGLESELGKGS 511 Query: 802 ----TLIEIIFPLYDTSHPHDCI 820 TL + D+S P + + Sbjct: 512 TFWFTLTPELSSTGDSSSPKEAL 534 >gi|24251268|gb|AAN46188.1| unknown protein [Synechococcus elongatus PCC 7942] Length = 977 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 76/247 (30%), Positives = 140/247 (56%), Gaps = 6/247 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ ++L A++ AE + KS FLA +SHE+RTPL AIIG+SE++ + + + Sbjct: 458 RETNDRLEQAREQAEAANQAKSAFLANMSHELRTPLNAIIGYSEMMMEEAEDGIEVEELL 517 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ--LYANEK 682 I+ +G +L+++N +LD+SKIE+G+M L+ E SL E ++ S+++ + N+ Sbjct: 518 PDFRKINNAGKHLLELINSILDLSKIEAGRMELYLESFSLPELINGVKSIIKPLIEKNQN 577 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 ++L+ +I + AD+ ++Q LN+LSNA FT G ++V+ +V Sbjct: 578 QLLV--DCPADIGLMTADVTKLRQTLLNLLSNASKFTHQGTDSAAGCCQ--GDQVVFKVV 633 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D+G+GM+ ++++ + F Q +S + GTGLGL +++ ++ GK + S +G+ Sbjct: 634 DSGIGMSPEQIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGKITVESVLGEGS 693 Query: 803 LIEIIFP 809 I P Sbjct: 694 TFTITLP 700 >gi|85710707|ref|ZP_01041771.1| sensory transduction histidine kinase [Erythrobacter sp. NAP1] gi|85687885|gb|EAQ27890.1| sensory transduction histidine kinase [Erythrobacter sp. NAP1] Length = 609 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 129/244 (52%), Gaps = 7/244 (2%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 +++L A+ A + KS FLA++SHEIRTP+ ++GF+E++ R++E Sbjct: 202 QSELRTARNEANAMAEAKSSFLAKMSHEIRTPMNGVMGFAELLSRSDLSH-EQARHVEL- 259 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I SG + ++ND+LD+SKIESG+ + EP ++ V I L + A EK I + Sbjct: 260 --IRESGKALQTLLNDILDLSKIESGEFRVKEEPANISHLVKRTIQLFEPLAREKVIGLS 317 Query: 688 TSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 + ++ +P+ + D ++Q+ N+++NAI FT GG +I S + VRDTG Sbjct: 318 SQVSDTLPQFAMLDALRLRQVLSNLVANAIRFTDRGGVSVI--VEPSPSGIAFTVRDTGT 375 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +E PF Q R GTGLGL +++ + + G+ + ST G+ + Sbjct: 376 GIPEEMIEAIFDPFSQSDGGNSTRRGGTGLGLSISRQLAELMGGELDVISTVGLGSSFIL 435 Query: 807 IFPL 810 PL Sbjct: 436 TLPL 439 >gi|312172971|emb|CBX81226.1| Two component sensor kinase/response regulator protein RcsC [Erwinia amylovora ATCC BAA-2158] Length = 987 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 87/264 (32%), Positives = 140/264 (53%), Gaps = 11/264 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG +++K + P G Sbjct: 478 DVSARVKMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTKAL-PAG 536 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + N S +L+L I++D+LD SKIES ++ + S E ++ + A Sbjct: 537 ADSLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEQREFSPREVIAHITANYLAMA 593 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +KR+ + +++P +L D ++Q+ N+L+NAI FT +GG II + + + Sbjct: 594 VKKRLTLWCFIDSDVPVLLEGDPMRLQQVISNLLNNAIKFTHTGG--IILQAYVKGDYLA 651 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 RVRD+GVG+ E+ + PF Q+ + Q +GTGLGL + + +++ G + S P Sbjct: 652 FRVRDSGVGIPAKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLMNMMDGDIEVESEP 711 Query: 799 AKGTLIEIIFPLYD----TSHPHD 818 G+ I PLY+ T P D Sbjct: 712 GMGSQFIIRIPLYNSRVVTLEPRD 735 >gi|284052123|ref|ZP_06382333.1| GAF sensor hybrid histidine kinase [Arthrospira platensis str. Paraca] Length = 928 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 133/234 (56%), Gaps = 5/234 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK+ A+ + KS+FLA +SHE+RTPL AI+GF++++ Q +G + EY Sbjct: 447 QLQQAKEAADTANRAKSEFLANMSHELRTPLNAILGFTQLL-GQNYGLTSQQQ--EYLQI 503 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I +SG +L ++N++LD+SKIE+G + L+ +L + +++Q+ A+ K +++ Sbjct: 504 IQQSGKYLLSLINEVLDLSKIEAGAVTLNPTNFNLITLLKRINTMLQIKASSKNLVMNIQ 563 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 +IP + D ++Q+ +N+L NAI FT +G + + +S ++ V DTG G+ Sbjct: 564 LQQDIPDYVQTDESKLRQVLVNLLDNAIKFTDAGSVTLRVSFVSSVSQLYFEVEDTGPGI 623 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 T E E+ KPF Q ++ +GTGLGL +++ V GK I S G Sbjct: 624 TPDEQERLFKPFVQTDVGRR-HQQGTGLGLAISQQYVSLMGGKITIVSVVDGGA 676 >gi|219848609|ref|YP_002463042.1| histidine kinase [Chloroflexus aggregans DSM 9485] gi|219542868|gb|ACL24606.1| histidine kinase [Chloroflexus aggregans DSM 9485] Length = 910 Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 87/257 (33%), Positives = 144/257 (56%), Gaps = 13/257 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 ++ E ++ + +L A+ AE S KS FLA +SHE+RTPLTAIIG+S++++ + Sbjct: 371 EVQERRRIEQELIRARDAAEAASRAKSTFLATMSHELRTPLTAIIGYSQLLEQL----VD 426 Query: 620 NPRYIEYANYIDR---SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675 Y A+ + R +GN +L ++ND+LDISKIE+G+M + E + + V +A++ V Sbjct: 427 KGIYETVAHDVRRIRAAGNHLLTLINDILDISKIEAGRMTISVEYADVADLVRDAVNTVL 486 Query: 676 -QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 Q+ N R+ + +I + +D V+Q +N+LSNA FT +G + T + Sbjct: 487 PQMEKNHNRLQLHCP--PDIGMLNSDATKVRQALINLLSNAAKFTENGTVTLTVTRYEDE 544 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + R V DTG+G+ +L+K K F QI +S + GTGLGL L++ + + G+ Sbjct: 545 GRLWFRFTVADTGIGIPPDKLDKLFKAFSQIDDSPTRKYGGTGLGLALSQRLCELVGGRI 604 Query: 793 YIFSTPAKGTLIEIIFP 809 + ST G++ I P Sbjct: 605 TVQSTVGVGSVFTIEVP 621 >gi|310819599|ref|YP_003951957.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309392671|gb|ADO70130.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 561 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 88/307 (28%), Positives = 156/307 (50%), Gaps = 3/307 (0%) Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD-IS 562 TP M +++L+ D +T +TL + E R++ + SS +H + Sbjct: 251 GTPLPMEAVASKVLT-DQGETTSIVTLLHDRTETREKARLLEQLKTASSELEAKVHTATA 309 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ KL E+ S+ KS FLA +SHE RTPL AI+G++ ++ G + P Sbjct: 310 ELAEQNEKLRRQALQLEQASAAKSQFLANMSHEFRTPLNAILGYTNMLLQGVSGEM-MPT 368 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 ID +G +L ++N++LDI++IE+G+M L+ +L E + E ++ + Sbjct: 369 QKRNLQRIDSNGRHLLQVINEILDITRIEAGRMPLNLSDFALPELLQEVMAELDPIIART 428 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 ++++ + +P + +D + VKQI LN+LSNA+ FT G + + S V++ V+ Sbjct: 429 KLVVDAALPPRLPEVHSDRQKVKQIVLNLLSNALKFTHEGSIQVNAEYQPSLSLVLISVK 488 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ EK + F Q+ +S GTGLGL + + + G+ + S +G+ Sbjct: 489 DTGIGIAQEHQEKIFEDFQQVDSSPTRAYGGTGLGLSICRRLATMLGGRITVQSALGQGS 548 Query: 803 LIEIIFP 809 + P Sbjct: 549 TFTLHLP 555 >gi|254499073|ref|ZP_05111765.1| transmission sensor LetS [Legionella drancourtii LLAP12] gi|254351700|gb|EET10543.1| transmission sensor LetS [Legionella drancourtii LLAP12] Length = 876 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 81/245 (33%), Positives = 137/245 (55%), Gaps = 9/245 (3%) Query: 563 EWKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E +EKN +LS KK E++S KS+F+A +SHEIRTP+ +IGF+ V+ + PL Sbjct: 239 ELLEEKNIELSLDKKKTEEKSRQKSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL--- 295 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 ++Y I S +L I+ND+LD SKI++GK++L P+++ + E ++L A++ Sbjct: 296 -QLDYVKTIKTSAQDLLGIINDILDFSKIDAGKLHLDCIPLNIRNCIDEVLTLAAPNAHK 354 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---V 737 K I + N+P+ +L D +KQ N+++NAI FT G ++ + ++ + Sbjct: 355 KGIDLIPITDINVPKTVLGDSFRIKQFISNLVTNAIKFTDHGYVLVRTKVEQETDKDYTL 414 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + + DTG+G++ + K F Q S R G+GLGL + K + +A G+ + S Sbjct: 415 CITISDTGLGISPEDQNKLFTAFNQADTSITRRYGGSGLGLVICKKLCEAMSGRLSMTSE 474 Query: 798 PAKGT 802 KG+ Sbjct: 475 LNKGS 479 >gi|225375400|ref|ZP_03752621.1| hypothetical protein ROSEINA2194_01025 [Roseburia inulinivorans DSM 16841] gi|225212736|gb|EEG95090.1| hypothetical protein ROSEINA2194_01025 [Roseburia inulinivorans DSM 16841] Length = 954 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 90/260 (34%), Positives = 136/260 (52%), Gaps = 13/260 (5%) Query: 567 EKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 EKN +L A A + + KSDFLAR+SHEIRTP+ AI+G +E+ K+ +P+ IE Sbjct: 548 EKNEQLLEAVDQANRANQAKSDFLARMSHEIRTPMNAIVGLTEIAKHYE----DDPKKIE 603 Query: 626 -YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 Y + ID S ++L+I+ND+LD+S IE+ KM + EP L E + ++ + +K I Sbjct: 604 DYLDKIDVSSKVLLNIINDILDMSSIENKKMKIAKEPFDLHEILMSVCTIYEPQCRQKGI 663 Query: 685 LIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--HTSNEEVILR- 740 + ++ D V QI LN++SNA FT SGG+I I + E+ Sbjct: 664 VFEVQDEEVTHTYLIGDGLRVNQILLNLVSNAYKFTSSGGKITIKVKELYVKEEKAYFNF 723 Query: 741 -VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG GM+ + +PF Q + + G+GLGL +AK V+ G + S Sbjct: 724 LVEDTGEGMSEEMQTRLFQPFEQESATTAQKHGGSGLGLSIAKNFVELMSGSISVKSKKG 783 Query: 800 KGT--LIEIIFPLYDTSHPH 817 +GT ++ I F + P Sbjct: 784 EGTTFVVSIPFEFEQAAEPE 803 >gi|219847586|ref|YP_002462019.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219541845|gb|ACL23583.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 944 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 103/384 (26%), Positives = 192/384 (50%), Gaps = 29/384 (7%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF----TVFL 501 +++IE+ + +++E T+DGI +++R+ ++ NR FG DI K + VF Sbjct: 331 QLQIELDRAQAVVETTNDGIVVLDRQRRVVIINRRACYFFGITEADIKEKSYDDLLLVFS 390 Query: 502 EQNTPSV-MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 SV + +L ++L + + E+ + K +L C+S + Sbjct: 391 RVFANSVRLGFWLGQLLGSETDRGWEEFQVVYPKSRRL-------------HCFSAPV-- 435 Query: 561 ISEWKQEKNKLSHAKKIA-EKESSH-KSDFLARVSHEIRTPLTAIIG-FSEVIKNQRFGP 617 I+ +Q ++ + + E+E K +F++ VSHE+RTPL++I G V+ + G Sbjct: 436 INRREQYLGRILIFRDVTREREIERLKDEFISIVSHELRTPLSSIQGSLQLVLGDDERGK 495 Query: 618 --LGNPRYIEYANYIDRSGN---LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 LG+ + + S N ++ +VND+LD++KIE GK+ L +PVS A+ Sbjct: 496 TGLGDRLPPQVRTMLQISLNNTQRLIRLVNDILDVNKIEQGKLQLQRKPVSPLAICRSAV 555 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + +A + + I N+P + AD + Q+ +N+LSNAI F+ G ++++S + Sbjct: 556 EELTSFARQHGVTIALDVPPNLPFVDADQDRIVQVVVNLLSNAIKFSSKGQRVLLSVVYE 615 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++ V VRD G G+ + + + + F Q+ + GTGLGL ++K +V+ + GK Sbjct: 616 TS-VVRFSVRDWGPGIPHTDQQFLFQKFRQLNQANNRERSGTGLGLAISKELVELHGGKI 674 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHP 816 ++ S P +G++ PL P Sbjct: 675 WVQSEPGQGSIFNFTLPLAKVQPP 698 >gi|254456888|ref|ZP_05070316.1| sensor protein GacS [Campylobacterales bacterium GD 1] gi|207085680|gb|EDZ62964.1| sensor protein GacS [Campylobacterales bacterium GD 1] Length = 761 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 86/251 (34%), Positives = 132/251 (52%), Gaps = 8/251 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 KL A+ A+K S K FL+ +SHEIRTPL AI+GF ++ ++ + ++ Y + Sbjct: 142 KLIDARLEADKASQAKEYFLSNMSHEIRTPLNAILGFVNLLIDEDV----SKKHRTYLDI 197 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG +L I+ND+LD SK+ SG+ + + SL + +S + L AN K I I + Sbjct: 198 ILNSGENLLSIINDILDFSKLRSGEFTIEPKIFSLHDEISHTMELFVASANVKDITITSF 257 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 +IP+ + AD +KQI N LSNAI FTP+GG I + + + L V D+G+G+ Sbjct: 258 IDPHIPKELYADALRIKQILSNFLSNAIKFTPNGGHISVEAA-CHHGILKLSVTDSGIGI 316 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 ++E F Q +SQQ +GTGLGL + + G + S G+ + Sbjct: 317 AEEDIENIFTAFAQAQHSQQKNCDGTGLGLSICHQLARHMNGSVHAKSIVGNGSEFWVEM 376 Query: 809 PLYDTSHPHDC 819 P+ +H C Sbjct: 377 PV--DAHSELC 385 >gi|189423648|ref|YP_001950825.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419907|gb|ACD94305.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 667 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 128/258 (49%), Gaps = 8/258 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E +Q + +L AK AE ++ KS+FLA +SHEIRTP++ +IG +++++ + N Sbjct: 269 ENRQAREELLQAKSEAEAANTAKSEFLANMSHEIRTPMSGLIGNAQLLRLTQL----NAE 324 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y I+ ++ ++ND+LDISKIE+GK+ L P SL V++ + + K Sbjct: 325 QTGYLTNIETDAKNLMSLINDVLDISKIEAGKLELESAPFSLRSCVAQLLKSQEARIAAK 384 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVI 738 I++ A ++P + D +KQI N++ NAI FT G ++ + H Sbjct: 385 AIVLTHEIAADLPDSLFGDQLRLKQILYNLVGNAIKFTAKGEIRVKVELLERHDDKARFC 444 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG+G+ EK PF Q S R GTGLGL + +V G + S Sbjct: 445 FSVTDTGIGIRPEAREKIFAPFIQADASVTRRFGGTGLGLSICSRLVQQMGGGITVESEE 504 Query: 799 AKGTLIEIIFPLYDTSHP 816 KG+ + P S P Sbjct: 505 GKGSTFSVTLPFLINSQP 522 >gi|160878669|ref|YP_001557637.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium phytofermentans ISDg] gi|160427335|gb|ABX40898.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium phytofermentans ISDg] Length = 490 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 103/373 (27%), Positives = 192/373 (51%), Gaps = 49/373 (13%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYP-------VEDILRKPFTVFLEQNTPSVM 509 +L+ ++G+ I ++ G I N A + GY + DI K V ++ ++ Sbjct: 9 VLKHCAEGVFIFDQTGQIFYANDAAMQETGYMDKLVDTNILDIFPKALKVHMDN---MII 65 Query: 510 NHYLTEILSLDLRQTLEKI---TLGSTKEEKLLSLRIII-----KKLPFSSCYSLTMHDI 561 N + E ++++T+E T K + +R+ + +K FS C + M ++ Sbjct: 66 NRFEVE----EVKETMEYSIIETFAYRKNQTCYPVRMKLLWGEKEKDNFSVCITRNMTEL 121 Query: 562 SE-WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI------KNQR 614 + K+EKN K+ ++ + K++FLA ++HE+RTP+ + G ++V+ +NQR Sbjct: 122 NAVMKREKN----VKEELKEATGVKNEFLANITHELRTPVNGMKGLADVLLGTELTQNQR 177 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 E N I R + + +I+N +LD SKI +GKM L + + + + +S Sbjct: 178 ----------ENVNIIRRCCDNMTNIINGILDFSKITAGKMQLENKVIDISNFLKNTLSY 227 Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 NEK + ++ + +N+P+ IL D ++QI N++SNAI FT S GQ++I +T Sbjct: 228 HIPKLNEKGLKLQVNIGDNVPKKILGDELRLEQILSNLISNAIKFT-SVGQLVIEVINTD 286 Query: 734 NEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 +E + V D+G+G++ +++K + F Q+ S R GTGLGL ++K++V+ Sbjct: 287 QKEDEVELFFMVIDSGIGISKEDMDKLFQSFSQVDGSITRRYGGTGLGLAISKSLVELMG 346 Query: 790 GKFYIFSTPAKGT 802 G ++ S +G+ Sbjct: 347 GTIHVSSEIGRGS 359 >gi|194366813|ref|YP_002029423.1| histidine kinase [Stenotrophomonas maltophilia R551-3] gi|194349617|gb|ACF52740.1| histidine kinase [Stenotrophomonas maltophilia R551-3] Length = 1175 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 133/242 (54%), Gaps = 10/242 (4%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S+ K+ FLA + HEIRTP+T ++G SE++ PL +P+ Y I Sbjct: 798 HKQELAEQASAAKTRFLANLGHEIRTPMTGVLGMSELLLAS---PL-DPQQRGYTQSIRH 853 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 +G +L +VND LD+++IESG++ L +P +L + + +L+ A +K +R + N Sbjct: 854 AGEHLLHLVNDALDLARIESGRLELQSKPFALSRLLQDLAALMGPLAAQKG--LRFTLDN 911 Query: 693 NIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 +P + D V+QI LN+LSNA+ FT G + + + + VRDTG G++ Sbjct: 912 QLPPGLQATGDAMRVRQILLNLLSNAVKFTSRGTITLHARSDGELRALHFEVRDTGPGIS 971 Query: 750 NYELEKAMKPFGQIPNSQ-QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + ++ + F Q ++ + G+GLGL + + + A G+ + S +GT + Sbjct: 972 QEQQQRLFRRFEQADGARTAAQYGGSGLGLAICRELAQAMQGRIQVESQLGRGTCFGVTL 1031 Query: 809 PL 810 PL Sbjct: 1032 PL 1033 >gi|294508545|ref|YP_003572604.1| two-component sensor histidine kinase [Salinibacter ruber M8] gi|294344874|emb|CBH25652.1| two-component sensor histidine kinase [Salinibacter ruber M8] Length = 959 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 90/270 (33%), Positives = 137/270 (50%), Gaps = 12/270 (4%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEV 609 T+ DI++ K+ + L AK AE S KS FLA +SHEIRTPLT+IIGF+E+ Sbjct: 690 TIQDITDQKEREQALRTAKADAEAARQEAEEASRLKSAFLANISHEIRTPLTSIIGFAEL 749 Query: 610 IKNQRFG-PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 I ++ L + YA I+RSG +L+ + +L++SK++SG+M L PV L+E + Sbjct: 750 IGSEAGALDLSDSPLPGYATMIERSGKRLLETLEGVLNLSKLQSGQMKLETAPVDLNEQI 809 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 A+ ++ A EK +R D ++ + N++SNAI +T GG I + Sbjct: 810 RWAVQELRPKAEEKG--VRLQLETGCAVAEGDEGGIQIVIRNLVSNAIKYTEQGGHIWVR 867 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + + + +L V DTG+GM E +PF Q EGTG+GL + V Sbjct: 868 SFQ-NEDRAVLEVEDTGIGMDPAVAESLFEPFRQASEGLNREYEGTGVGLAVTNKAVAQM 926 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 G + + +GT I P + HP D Sbjct: 927 DGSIEVDTEKDEGTRFTIQLPASE-EHPTD 955 >gi|327192798|gb|EGE59726.1| putative two-component sensor histidine kinase protein [Rhizobium etli CNPAF512] Length = 861 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 112/410 (27%), Positives = 193/410 (47%), Gaps = 35/410 (8%) Query: 424 FPENMPQNG--------IEPEDVDTRINKR-KMEIEVMQLCSILEATSDGIAIINREGII 474 F PQ G E D++TR N K++ E ++ S+G+A+ +G I Sbjct: 464 FATAHPQGGATWVFENLTEQVDLETRYNTLVKVQGET------IDHLSEGVAVFGPDGRI 517 Query: 475 LSTNRAVSKLFGYPVEDILRKPFT---VFLEQNTPSV-----MNHYLTEILSLDLRQTLE 526 +N A L+G + + KP T E PS + I S D + Sbjct: 518 RLSNPAFRALWG--ITEAEAKPGTHIRALGEACAPSYDRPDGWKTFAELITSFDDERRSG 575 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 + TL E L + +P + + LT ++++ + + L+ + K K Sbjct: 576 QGTL-----ELFSGLVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELK 630 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 +DF+ VS+E+R+PLT IIGF+++++ Q GPL N R EY ++I S +++L +VND+L Sbjct: 631 NDFVQHVSYELRSPLTNIIGFTDLLRTQGVGPL-NERQAEYIDHISTSSSVLLTLVNDIL 689 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705 D++ +++G M L++ + L++ + + + E + + + + I+AD + +K Sbjct: 690 DLATVDAGIMRLNYAEIDLNDLLDDVSMQIADRLQESGVALEITAPAYLGSIVADPQRLK 749 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 QI L +LSNA +F+P G I + + + VRD G G++ + F Sbjct: 750 QILLKLLSNAANFSPEGSSISLECRREGT-DFVFSVRDRGPGISPDMIATVFDRFATGAK 808 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 S + RG G GLGL + + V + G I S P KGT + P + H Sbjct: 809 SGK-RG-GAGLGLSIVDSFVSLHHGDVTIDSEPGKGTTVVCRIPSVNIPH 856 >gi|71909751|ref|YP_287338.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71849372|gb|AAZ48868.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 916 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 132/247 (53%), Gaps = 8/247 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI++ K+ + ++ AK+ AE + KSDFLA +SHEIRTP+ +IG +++ Sbjct: 379 DITDRKRAEIEVLRAKEAAEAANRAKSDFLANMSHEIRTPMNGVIGMTDLALETAL---- 434 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 EY N S +L ++ND+LD SKIE+GK+ + P L +++ + + L A Sbjct: 435 TEEQREYLNIAKSSAESLLTVINDILDFSKIEAGKLQVEDIPFDLHRLIADTLKPLALRA 494 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNE 735 +EK I I + +++PR + D ++Q+ +N++ NAI FT G Q + + Sbjct: 495 HEKDIEILSDVVHDVPRFVKGDPSRIRQVLVNLVGNAIKFTEQGEIALQADLMQLQNGHA 554 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + VRDTG+G++ + F Q +S + GTGLGL + + +V+ G ++ Sbjct: 555 VIHFAVRDTGIGISADKQMLIFDAFAQEDSSTTRKYGGTGLGLSICRRLVELMGGTLWLH 614 Query: 796 STPAKGT 802 S P KG+ Sbjct: 615 SEPGKGS 621 >gi|330808383|ref|YP_004352845.1| histidine kinase, Unorthodox [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376491|gb|AEA67841.1| putative Histidine kinase, Unorthodox [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 1187 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 110/382 (28%), Positives = 191/382 (50%), Gaps = 34/382 (8%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT------VFL 501 ++E M S+L T I + +R GI+ S N + + F ED++ K F Sbjct: 559 QLEFMH--SLLNGTPHPIYVRDRNGILQSCNDSYLQTFDVKREDVIGKNLMPGSMSNAFE 616 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-- 559 Q + + E +L + + L +G + L I LP+ + + Sbjct: 617 AQEYQADYQRVMAEGTALIVDRPLH---IGDRQ------LTIYHWILPYRNSAAEVQGII 667 Query: 560 ----DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQR 614 DISE +Q +L +K+ A+ + KS FLA +SHEIRTP+ A+IG E+ +K+ Sbjct: 668 GGWIDISERRQLFEELRASKQRADDANRAKSTFLATMSHEIRTPMNAVIGMLELALKHAD 727 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 G + + IE A Y SG +L+++ D+LDI++IESG ++L E V+L + I + Sbjct: 728 KGHV-DRSTIEVA-YESASG--MLELIGDILDIARIESGHLSLAPERVNLRALLQSVIRV 783 Query: 675 VQLYANEKRILIRTSF--ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTH 731 + A +K + + F A P +L D KQ+ N++SNA+ FT G I + + Sbjct: 784 FEGVARQKNLALSLQFDAAEGSPDVLMDPLRFKQVLSNLISNALKFTEQGQVAIKVRLSP 843 Query: 732 TSNEEVI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 T ++ + L V D+G+G+ +L++ +PF Q+ N++++ G GLGL +++ + Sbjct: 844 TDRDDALQMHLEVNDSGIGIGPADLQRLFEPFAQVDNTRRMARNGAGLGLVISRNLCQMM 903 Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810 G ++ S P GT +++ L Sbjct: 904 GGSLHMNSQPGTGTQVQVRLQL 925 >gi|323692858|ref|ZP_08107084.1| sensor protein [Clostridium symbiosum WAL-14673] gi|323503087|gb|EGB18923.1| sensor protein [Clostridium symbiosum WAL-14673] Length = 939 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 138/253 (54%), Gaps = 17/253 (6%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + L A + A++ + KS+FLA++SH+IRTPL AI G S + +Q P + + Sbjct: 537 RKALLAAYEAAKQANEAKSNFLAQMSHDIRTPLNAITGMSSIALSQAEDP---EKVRDCL 593 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I S + +++++ND+LD+SKIE GK+ L P SL E + + S++ A K+ + Sbjct: 594 KKITLSSHHLIELINDVLDMSKIEKGKLELAEAPFSLKELLGDVESILSPQACAKKQEL- 652 Query: 688 TSFANNIPR-----ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EV 737 F N P+ + D ++Q+ +N+++NAI +TP GG+I I+ S+ + Sbjct: 653 -CFHN--PKSPHDHLCGDAGRIRQVLINLITNAIKYTPDGGRIDIAVQEVSSHLQGYGCL 709 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V DTG+GM+ L+ PF + +++ +GTGLG+P+A +V A G + S Sbjct: 710 VFTVADTGIGMSKDFLDYIFVPFSRAEDAKACHIQGTGLGMPIALGIVTAMQGNIQVESE 769 Query: 798 PAKGTLIEIIFPL 810 P KG+ + L Sbjct: 770 PGKGSRFTVTLHL 782 >gi|90423379|ref|YP_531749.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] gi|90105393|gb|ABD87430.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] Length = 923 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 133/237 (56%), Gaps = 11/237 (4%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A + S K+DFLA +SHEIRTPL I+G ++++ + PL + + ++ + + +SG+L+ Sbjct: 411 ANEVSRAKTDFLATMSHEIRTPLNGILGMAQLLDDS---PL-SAQQRQWLDAVAQSGSLL 466 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L I+ND+LD+SKIE+G+M L S DE + + + A K + T + R+ Sbjct: 467 LAILNDILDLSKIEAGRMELESIAFSPDELLRTIAAAMTPQAAGKGLAFLTEYPALPARL 526 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNY 751 + D + Q+ LN++ NA+ FT S G++++S +E+ + RV DTG+G+ Sbjct: 527 IGDPAKISQVLLNLVGNAVKFTHS-GEVVLSVNWAPDEQRPDRGRMEFRVTDTGIGIARQ 585 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + PF Q +S R G+GLGL + K ++DA GK + ST G++ ++ Sbjct: 586 AVPHVFDPFSQSDSSITRRFGGSGLGLAICKRIIDAMGGKITVESTLGCGSVFTVVL 642 >gi|319651812|ref|ZP_08005937.1| sensor protein [Bacillus sp. 2_A_57_CT2] gi|317396464|gb|EFV77177.1| sensor protein [Bacillus sp. 2_A_57_CT2] Length = 591 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 103/380 (27%), Positives = 186/380 (48%), Gaps = 49/380 (12%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 + E++ +L +++E G+ +I+ G I NR ++F + L K + +E Sbjct: 238 KSQEMQQDRLGALIENMGSGLILIDSRGYINLMNRPYKEVFNVNPSEYLYKLYYEVIEHK 297 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--------- 555 + M +E+I + K +K L + + I++ F Y Sbjct: 298 GITEM---------------VEEIFMTEQKVKKQLIIPVNIERRYFE-VYGVPIIGTNDE 341 Query: 556 -----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 L HDI+E K KL +K DF+A VSHE++TP+T+I GFSE + Sbjct: 342 WKGILLVFHDITELK----KLEQMRK----------DFVANVSHELKTPITSIKGFSETL 387 Query: 611 KNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + G + + + + ++ + I + + + ++ DLLD+SKIE +L + + L + + Sbjct: 388 LD---GAMEDKQALNDFLSIILKESDRLQSLIQDLLDLSKIEKQGFSLSIQQLDLTDVLE 444 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 + +++++ A EK I+ + I D+ +KQ+ +NI+SNAI +TP+ G I IS Sbjct: 445 DVMAIMKGKAAEKEIVFKYQRDEKPVYIEGDIHRLKQVFINIISNAISYTPNQGVIYISA 504 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 T + V+ +RDTG+G+ E+ + + F ++ ++ GTGLGL + K +V+A+ Sbjct: 505 AKTGS-TVLTEIRDTGIGIEASEIPRIFERFYRVDKARSRNSGGTGLGLAIVKHLVEAHK 563 Query: 790 GKFYIFSTPAKGTLIEIIFP 809 G + S KGT I P Sbjct: 564 GSISVKSEVGKGTSFIIELP 583 >gi|325110130|ref|YP_004271198.1| response regulator receiver sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324970398|gb|ADY61176.1| response regulator receiver sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 538 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 136/247 (55%), Gaps = 7/247 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L ++++ A+ + KS + +SHEIRTP+TA++G +V+ N + Sbjct: 141 RLKNSERAADSANRAKSALIGNISHEIRTPMTAVLGLCDVLLQSSL----NDDQRNLLSM 196 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I +G+ +++IVNDLLDISK+E+ + + ++L + + + IS++ + ANE + Sbjct: 197 IRDNGSYLVEIVNDLLDISKMEADMLEIKPLAINLRDFLDDLISIMGVRANENSTTLDVG 256 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VRDTGV 746 FA+++P I AD ++QI LN+LSNAI FTP+G + + ++ + ++R V D G Sbjct: 257 FADDVPEWIFADPIRLRQILLNLLSNAIKFTPNGKVRLEAQNAGNDSQNLIRFVVEDNGC 316 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +LE PF Q R GTGLGL + + ++ A G+ + S +G+ I Sbjct: 317 GIPQEDLENIFLPFMQSGTDLANRSRGTGLGLSICRRLIVAMGGRIDVESVIDEGSSFTI 376 Query: 807 IFPLYDT 813 PL + Sbjct: 377 TLPLVEA 383 >gi|163853828|ref|YP_001641871.1| ATPase domain-containing protein [Methylobacterium extorquens PA1] gi|163665433|gb|ABY32800.1| ATP-binding region ATPase domain protein [Methylobacterium extorquens PA1] Length = 846 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/265 (29%), Positives = 137/265 (51%), Gaps = 5/265 (1%) Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + LP + LT D++ + L+ E+ S + F+ VS+E+R+PLT IIG Sbjct: 574 QPLPLGATL-LTFIDVTASANVERALTEKNDALERASQLRDTFVHHVSYELRSPLTNIIG 632 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 F++++ ++ G L N R EY+ +I RS +L I+ND+LD++ I++G + L E + + Sbjct: 633 FTQLLGDETVGAL-NERQREYSEHIMRSSAALLVIINDILDLASIDAGSLELQRETIDVR 691 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 V A+ ++ E I + + + AD + V+QI N+LSNA+ F+ G Q+ Sbjct: 692 ATVEAAVRGIEDRLAESDIGLDLDVPEGVGSVFADGKRVRQILFNLLSNAVGFSAPGQQV 751 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + E+ L V D G G+ +++ F N+ + G GLGL + ++ V Sbjct: 752 RVE-ARREGRELRLTVTDRGRGIAPEVIDRVFDRFES--NTLGTKHRGVGLGLSIVRSFV 808 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810 + + G+ I S P GT + +FP+ Sbjct: 809 ELHGGRVEIHSAPGTGTRVTCLFPV 833 >gi|156932728|ref|YP_001436644.1| hybrid sensory histidine kinase BarA [Cronobacter sakazakii ATCC BAA-894] gi|156530982|gb|ABU75808.1| hypothetical protein ESA_00517 [Cronobacter sakazakii ATCC BAA-894] Length = 919 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 132/237 (55%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQR----DHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ A++K + + S Sbjct: 334 IERSANNLLSIINDVLDFSKLEAGKLLLESIPFPLRSTLDEVVTLLAHSAHDKGLELTIS 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++Q+ N++ NAI FT G I++ SN +V + V RDTG Sbjct: 394 VRHDVPDNVIGDPLRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRGS 510 >gi|330809799|ref|YP_004354261.1| sensor/response regulator hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377907|gb|AEA69257.1| putative sensor/response regulator hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 770 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 105/364 (28%), Positives = 191/364 (52%), Gaps = 26/364 (7%) Query: 457 ILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLT 514 I++ D GI ++ +G + + N ++ GY ++IL + F++F L + P+ L Sbjct: 274 IIDGVKDYGIFALDAQGYVTTWNAGAERIKGYTEQEILGRHFSLFYLAEECPAHPEMALR 333 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKL 571 E + +E+ + + +I + + +S DI++ + + L Sbjct: 334 E--ATRDGHYMEEGWRCRKDGSRFWASVVITAQYDGTGALRGFSKITRDITDRRAAEIAL 391 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQRFGPLGNPRYIEY 626 A++ AE S KS+FL+R+SHE+RTPL AI+GF++++ QR Sbjct: 392 RTAREEAESASRAKSEFLSRMSHELRTPLNAILGFAQLLDMDSTAGQR----------PQ 441 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-L 685 ++I R+G +L ++N++LDI++IE+G++ L+ EP++L + EA++LV A + I L Sbjct: 442 VSHILRAGQHLLALINEVLDIARIEAGRLPLNIEPIALSTVLHEALTLVSPMAADAGIHL 501 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + +LAD + + Q+ LN+LSNAI + GG++ I + +V + V DTG Sbjct: 502 AELPALPDDSGVLADRQRLVQVLLNLLSNAIKYNRPGGEVRIEVS-VQAHQVSIAVNDTG 560 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 G+ +L++ KPF ++ Q+ EGTGLGL L+K++++ G + S P G Sbjct: 561 HGIAPEQLDQLFKPFERLGADPQV--EGTGLGLSLSKSLLEMMQGNLQVHSEPGHGCCFT 618 Query: 806 IIFP 809 + P Sbjct: 619 LQLP 622 >gi|317472683|ref|ZP_07931998.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA] gi|316899860|gb|EFV21859.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA] Length = 940 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 129/231 (55%), Gaps = 12/231 (5%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE +S KS+FL+++SHEIRTP+ AI G +++++ + P G ++ I S + Sbjct: 560 AEAKSRAKSEFLSQMSHEIRTPMNAITGLTDLLRMEEKLPDGAREKLQK---IHASSQYM 616 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696 L ++ND+LD+SKIE+GK+N+ E SL E + I ++++ A EK+ I F I Sbjct: 617 LSLINDILDMSKIENGKLNIEPEDFSLTELLDGLIEMMEVQAEEKQ--IHFEFVREIEHD 674 Query: 697 -ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNY 751 + D ++Q+ N+LSNA FT GG++ ++ S E V+D G+G+ Sbjct: 675 FVTGDPIRLRQVLTNLLSNAFKFTKHGGRVTLTVREEHRDVSTGEYFFSVKDNGIGIAQD 734 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 ++ + F Q+ S R EGTGLGLP++ +++ A G + S KG+ Sbjct: 735 RQKQIFEAFEQLGASSA-RSEGTGLGLPISSSIIKAMGGNLMVESQTGKGS 784 >gi|291571293|dbj|BAI93565.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 1390 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 133/234 (56%), Gaps = 5/234 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK+ A+ + KS+FLA +SHE+RTPL AI+GF++++ Q +G + EY Sbjct: 909 QLQQAKEAADTANRAKSEFLANMSHELRTPLNAILGFTQLL-GQNYGLTSQQQ--EYLQI 965 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I +SG +L ++N++LD+SKIE+G + L+ +L + +++Q+ A+ K +++ Sbjct: 966 IQQSGKYLLSLINEVLDLSKIEAGAVTLNPTNFNLITLLKRINTMLQIKASSKNLVMNIQ 1025 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 +IP + D ++Q+ +N+L NAI FT +G + + +S ++ V DTG G+ Sbjct: 1026 LQQDIPDYVQTDESKLRQVLVNLLDNAIKFTDAGSVTLRVSFVSSVSQLYFEVEDTGPGI 1085 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 T E E+ KPF Q ++ +GTGLGL +++ V GK I S G Sbjct: 1086 TPDEQERLFKPFVQTDVGRR-HQQGTGLGLAISQQYVSLMGGKITIVSVVDGGA 1138 >gi|213971910|ref|ZP_03400010.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. tomato T1] gi|301384480|ref|ZP_07232898.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. tomato Max13] gi|302060514|ref|ZP_07252055.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. tomato K40] gi|302132002|ref|ZP_07257992.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213923335|gb|EEB56930.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. tomato T1] Length = 917 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 138/237 (58%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR +Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQFDYLAT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K + + + Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKHLELVSL 385 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 + P L+ D ++QI N++SNAI FT G + + EE + + V+DTG Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|56460833|ref|YP_156114.1| hybrid sensor histidine kinase [Idiomarina loihiensis L2TR] gi|56179843|gb|AAV82565.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains) [Idiomarina loihiensis L2TR] Length = 866 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 88/272 (32%), Positives = 143/272 (52%), Gaps = 25/272 (9%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS------EVIKN 612 +DIS K ++ AK+ AE+ + K +FLA +SHEIRTP+ AI+G + E+ + Sbjct: 182 YDISGIKSVAEEMEKAKETAERANQSKGEFLANMSHEIRTPINAIVGMANLCLKTELTQK 241 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 Q+ RYI+ ID S +L ++ND+LD SKI++GK+ + P L + ++ Sbjct: 242 QK-------RYIK---VIDSSSQALLGVINDILDFSKIDAGKLTVERIPFDLQDVLTSLA 291 Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTT 730 + A +K + + NIP R++ D + Q+ +N++SNAI FT G + ++ Sbjct: 292 DMFAYRAYDKDLEFIINLPANIPTRLIGDPLRLNQVLVNLISNAIKFTEDGEINVAVNLL 351 Query: 731 HTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 +S + V+LR V DTG+GM + K F Q S + GTGLGL +++ ++ Sbjct: 352 DSSRDNVLLRISVTDTGIGMDEEQRANLFKAFTQADTSTTRKYGGTGLGLAISRRLILLM 411 Query: 789 MGKFYIFSTPAKGT--LIEIIFPL---YDTSH 815 G + S +G+ IE+ PL D SH Sbjct: 412 GGDIGVTSAAGQGSTFYIEVELPLQTEQDNSH 443 >gi|225568537|ref|ZP_03777562.1| hypothetical protein CLOHYLEM_04614 [Clostridium hylemonae DSM 15053] gi|225162765|gb|EEG75384.1| hypothetical protein CLOHYLEM_04614 [Clostridium hylemonae DSM 15053] Length = 1410 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 137/250 (54%), Gaps = 14/250 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ K L +A +AE+ + KSDFL+ +SH+IRTP+ AIIG + + G G R Sbjct: 1007 RKNKKALENALVLAEEANRAKSDFLSTMSHDIRTPMNAIIGMT-TLAVAHLGDSG--RVA 1063 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK-- 682 + N I S +L ++ND+LD+SKIES +++L+ + L + + + +++ A E Sbjct: 1064 DCLNKISISSRHLLSLINDILDMSKIESAQISLNRMEIYLPDMLEKLSAIIAPQAGEAGI 1123 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEVILR 740 R IRT + D + QI +NILSNA+ +T GG ++ + + + LR Sbjct: 1124 RFDIRTEGIRH-NYFYGDALRIDQILINILSNAVKYTREGGSVMFAAEEIPSVRQAGWLR 1182 Query: 741 VR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 R DTG+GMT LE PF + +Q+I EGTGLGL + K +VD G+ + S Sbjct: 1183 YRFTVSDTGIGMTEEFLEHIFDPFARSAGTQRI--EGTGLGLSITKGLVDLMGGEISVQS 1240 Query: 797 TPAKGTLIEI 806 TP +G+ ++ Sbjct: 1241 TPGEGSCFQV 1250 >gi|189424608|ref|YP_001951785.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189420867|gb|ACD95265.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1199 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 127/249 (51%), Gaps = 12/249 (4%) Query: 574 AKKIAEKE----SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 A+K+ E+ + K FLA +SHEIRTP+ +IG + +++ NP +Y Sbjct: 678 ARKLTEQALQDATEAKMQFLANMSHEIRTPMNGVIGMTGLLQESGL----NPEQQQYVEV 733 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG+L+L I+ND+LD SK+E+G++ L P + ++E I LV A K + + Sbjct: 734 IRASGDLLLSIINDILDFSKMEAGRLELEQTPFDVSMILNEVIDLVSTQAQSKGLALERH 793 Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTG 745 P L D+ ++QI LN+L NAI FT SG Q + ++ +VRDTG Sbjct: 794 LELAQPCYLKGDVTRLRQILLNLLVNAIKFTESGSVTLQARVEPGQDRRSMLLCQVRDTG 853 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G++ +LE PF Q S + GTGLGL +++ + G+ + S +GT Sbjct: 854 IGISEQQLETLFDPFTQADASITRKYGGTGLGLAISRHLTQLMEGEIGVDSHQGQGTTFR 913 Query: 806 IIFPLYDTS 814 + P + Sbjct: 914 LSIPFLSCT 922 >gi|331016785|gb|EGH96841.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 917 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL +I+GF+ +++ PR +Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNSILGFTHLLQKSEL----TPRQFDYLAT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K + + + Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKHLELVSL 385 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 + P L+ D ++QI N++SNAI FT G + + EE + + V+DTG Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|120601368|ref|YP_965768.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] gi|120561597|gb|ABM27341.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] Length = 1223 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 82/268 (30%), Positives = 141/268 (52%), Gaps = 13/268 (4%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L + D++ KQ + ++ ++ A S KS F+A +SHE+RTPL+ I+G ++V Sbjct: 818 LLLQDVTSRKQWEEQMRASRDEAAAMSELKSQFVANISHEMRTPLSGILGIADVALTTE- 876 Query: 616 GPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 GNP + Y + + +L ++NDLLD S++E+G+M L L V +A++ Sbjct: 877 ---GNPALLRNYFSMVQNVAEGLLGVINDLLDFSRLEAGRMPLDKVEYDLHTTVRDALAP 933 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIIST--- 729 + + A K + + N +P L D ++QI +N++ NA+ FTP G + +ST Sbjct: 934 LAMQAERKGLALELHMQNGLPLTLRGDPLRLRQILVNLVGNAVKFTPQGTVHVDVSTGDG 993 Query: 730 -THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 TH E ++ + DTG G+ + +L + F Q S + G+GLGL +++ +V+ Sbjct: 994 VTH-DRECLVFTIEDTGPGIPHEKLAHIFESFAQADGSYSRQHTGSGLGLAISRHLVELQ 1052 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 G + STP +G++ PL D HP Sbjct: 1053 GGDIGVQSTPGEGSVFWFTLPLGDI-HP 1079 >gi|88799664|ref|ZP_01115239.1| sensor protein LuxQ [Reinekea sp. MED297] gi|88777558|gb|EAR08758.1| sensor protein LuxQ [Reinekea sp. MED297] Length = 770 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 86/308 (27%), Positives = 164/308 (53%), Gaps = 12/308 (3%) Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562 Q +P ++ +L L L + T G + + +S+ I K+ F++ + + Sbjct: 331 QQSPYALSFFLAWSLWSLLTAIVTLATFGVIRAD--VSMLWIYLKIAFAAHNLVLTWSVG 388 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 +E L +++K A ES KS+ +A+VSHEIRTP+ IIG S++++ G + Sbjct: 389 LRMRE---LFNSRKQARAESEAKSNLIAQVSHEIRTPMNGIIGTSQLLEAHLHGKEAH-- 443 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + I SG +L I+NDLLD+S++E+G++ L EPV L + + + ++ +K Sbjct: 444 --HLNDVIFHSGTTLLTIINDLLDLSRLETGRIRLRPEPVDLRKLMGQVFQILNSQIKQK 501 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ + ++++P + D ++Q+ LNI+ NAI +T G + T + + +++ Sbjct: 502 KLQYELTVSDHVPDWVELDPVRLRQVLLNIVGNAIKYTDQGQ--VRMTADYRHPSLSIQI 559 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG G+ L+ +P+ Q+ + +GTGLGL +A+++VD G + ST +G Sbjct: 560 DDTGRGIPETHLKSLFQPYVQVRQDAEEERKGTGLGLHIAQSLVDLMEGHLSLESTEGQG 619 Query: 802 TLIEIIFP 809 T ++++ P Sbjct: 620 TTVQLLVP 627 >gi|261854763|ref|YP_003262046.1| integral membrane sensor hybrid histidine kinase [Halothiobacillus neapolitanus c2] gi|261835232|gb|ACX94999.1| integral membrane sensor hybrid histidine kinase [Halothiobacillus neapolitanus c2] Length = 858 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 128/253 (50%), Gaps = 2/253 (0%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 M E +Q A+K AE + KS F+A +SHE+RTPL AIIG+SE++ + Sbjct: 311 MQRTEELEQALKIAGEARKEAEDANQTKSQFVANMSHELRTPLNAIIGYSEILLEESEDD 370 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 GN +Y I SG +L +VND+LDIS+IE+GKM L+ E + + I + Sbjct: 371 -GNTQYAPDLERILNSGKHLLALVNDILDISRIEAGKMELYLESFPICREIQTVIDTARP 429 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 ++ + + +++ + DL +QI LN++SNA FT G + +S + Sbjct: 430 VIDKNQNSLVFECDDSLGHMRGDLTKFRQILLNLISNAAKFTQV-GTLTLSVRREDTDHF 488 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V DTG+GM +L + + F Q S + G+GLGL +++ G ST Sbjct: 489 TIAVADTGIGMNEEQLGRLFQVFSQADASTTRKYGGSGLGLSISRHFARMMGGDITATST 548 Query: 798 PAKGTLIEIIFPL 810 P G++ + PL Sbjct: 549 PGSGSVFTVSLPL 561 >gi|46581461|ref|YP_012269.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46450883|gb|AAS97529.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|311235114|gb|ADP87968.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1] Length = 1223 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 82/268 (30%), Positives = 141/268 (52%), Gaps = 13/268 (4%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L + D++ KQ + ++ ++ A S KS F+A +SHE+RTPL+ I+G ++V Sbjct: 818 LLLQDVTSRKQWEEQMRASRDEAAAMSELKSQFVANISHEMRTPLSGILGIADVALTTE- 876 Query: 616 GPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 GNP + Y + + +L ++NDLLD S++E+G+M L L V +A++ Sbjct: 877 ---GNPALLRNYFSMVQNVAEGLLGVINDLLDFSRLEAGRMPLDKVEYDLHTTVRDALAP 933 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIIST--- 729 + + A K + + N +P L D ++QI +N++ NA+ FTP G + +ST Sbjct: 934 LAMQAERKGLALELHMQNGLPLTLRGDPLRLRQILVNLVGNAVKFTPQGTVHVDVSTGDG 993 Query: 730 -THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 TH E ++ + DTG G+ + +L + F Q S + G+GLGL +++ +V+ Sbjct: 994 VTH-DRECLVFTIEDTGPGIPHEKLAHIFESFAQADGSYSRQHTGSGLGLAISRHLVELQ 1052 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 G + STP +G++ PL D HP Sbjct: 1053 GGDIGVQSTPGEGSVFWFTLPLGDI-HP 1079 >gi|317485692|ref|ZP_07944563.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] gi|316923057|gb|EFV44272.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] Length = 1132 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 88/247 (35%), Positives = 128/247 (51%), Gaps = 21/247 (8%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV--IKNQRFGPLGNPRYIEY 626 +L A K A+ + KS FLA +SHEIRTPL II F+E+ +KN P + R I Sbjct: 350 TELQQAMKAADAATEAKSRFLANISHEIRTPLHGIISFTELAYLKNNPL-PRNHQRTILD 408 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL--YANEKRI 684 +Y +LDIVND LD SKIE+G+M+ P LDE + + A E Sbjct: 409 LSYA------LLDIVNDTLDFSKIEAGEMDTDTAPFMLDEVILRVCDMTMRGSMARELEC 462 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---------E 735 LI + + +L D ++QI N++ NA+ FTP GG+I + H N Sbjct: 463 LIDIDPSTPL-ALLGDAGRLQQILTNLMGNAVKFTPPGGRIHLQVRHGGNLHLSENQNKA 521 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + + V DTGVG+ +L + +PF Q +S R GTGLGL +A+ MV+ G+ ++ Sbjct: 522 QFLFFVHDTGVGIAPDQLPQLFQPFKQADSSLTRRHGGTGLGLSIARYMVENMGGEIWVE 581 Query: 796 STPAKGT 802 S +G+ Sbjct: 582 SEVGQGS 588 >gi|307824660|ref|ZP_07654884.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307734314|gb|EFO05167.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 929 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 82/276 (29%), Positives = 150/276 (54%), Gaps = 31/276 (11%) Query: 557 TMHDISEWKQEKNKLSH------------------AKKIAEKESSHKSDFLARVSHEIRT 598 T+ D++E K+ + L H AK+ A++ ++ KS+FL+R+SHE+RT Sbjct: 517 TVQDVTELKRTELALKHLNEELEQRVQQRTELLLKAKEEADRANNAKSEFLSRMSHELRT 576 Query: 599 PLTAIIGFSEVIKNQRFGPL-----GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 P+ AI+GF+++++ R P+ N R I +A G +L+++N++LD+++IE+G Sbjct: 577 PMNAIMGFAQLLETDRETPITLDQADNVREIRHA------GQHLLELINEVLDLARIETG 630 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713 ++ L EPV + + E ++L+Q +RI ++ + + AD ++QI LN+LS Sbjct: 631 RIELSLEPVEVPLLIGECMALLQPLTLGRRIELKLDI-DGTGTVQADRLRLRQILLNLLS 689 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 NAI + G + I+ + + + V D+G G+ + + KPF +I ++ EG Sbjct: 690 NAIKYNRDRGNVHITCQPVAAGRIRIAVCDSGRGIAVDAMTRLFKPFERIESAYD-GIEG 748 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 TG+GL L+K +V+A G + S G+ + P Sbjct: 749 TGIGLALSKRLVEAMGGTIGVESVVGAGSTFWVELP 784 >gi|260599137|ref|YP_003211708.1| hybrid sensory histidine kinase BarA [Cronobacter turicensis z3032] gi|260218314|emb|CBA33302.1| Signal transduction histidine-protein kinase barA [Cronobacter turicensis z3032] Length = 919 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 132/237 (55%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQR----DHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ A++K + + S Sbjct: 334 IERSANNLLSIINDVLDFSKLEAGKLLLESIPFPLRSTLDEVVTLLAHSAHDKGLELTIS 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++Q+ N++ NAI FT G I++ SN +V + V RDTG Sbjct: 394 VRHDVPDNVIGDPLRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRGS 510 >gi|119774168|ref|YP_926908.1| hybrid sensory histidine kinase BarA [Shewanella amazonensis SB2B] gi|119766668|gb|ABL99238.1| multi-sensor hybrid histidine kinase [Shewanella amazonensis SB2B] Length = 941 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 91/257 (35%), Positives = 140/257 (54%), Gaps = 12/257 (4%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYANY 629 L AKK A++ S KS+FLA +SHE+RTPL +IGF+ +++K PL + + +EY Sbjct: 298 LDRAKKDAQEASRIKSEFLANMSHELRTPLNGVIGFARQLLKT----PLHSSQ-MEYIKT 352 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS +L I+ND+LD SK+E+ KM L P L ++ + I+L+ A+ K + Sbjct: 353 IERSATSLLQIINDILDFSKLEANKMVLETMPFGLRASLEDTINLLAGSAHAKGLEFVVD 412 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTG 745 N+P L+ D+ + Q+ N+L NAI FT G +I +++ +N + V DTG Sbjct: 413 VDANVPENLSGDVMRLGQVMTNLLGNAIKFTEEGSVHLKISLASLEDNNLTLRCEVTDTG 472 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM-GKFYIFSTPAKGTLI 804 +G+ + E + FGQ +S R GTGLGL + K +V M G+ S KG+ Sbjct: 473 IGIDPEQQELLFQAFGQADSSISRRYGGTGLGLVITKRLVVQMMGGRIGFHSEVGKGSSF 532 Query: 805 EIIFPLYDTSHP-HDCI 820 PL + P HD + Sbjct: 533 WFTVPLQLSPFPVHDTL 549 >gi|240141281|ref|YP_002965761.1| putative histidine kinase, putative HK, ATPase and Sensor Domain [Methylobacterium extorquens AM1] gi|254563790|ref|YP_003070885.1| histidine kinase [Methylobacterium extorquens DM4] gi|240011258|gb|ACS42484.1| putative histidine kinase, Putative HK, ATPase and Sensor Domain [Methylobacterium extorquens AM1] gi|254271068|emb|CAX27075.1| putative histidine kinase, Putative HK, ATPase and Sensor Domain [Methylobacterium extorquens DM4] Length = 847 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/265 (29%), Positives = 137/265 (51%), Gaps = 5/265 (1%) Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + LP + LT D++ + L+ E+ S + F+ VS+E+R+PLT IIG Sbjct: 574 QPLPLGATL-LTFIDVTASANVERALTEKNDALERASQLRDTFVHHVSYELRSPLTNIIG 632 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 F++++ ++ G L N R EY+ +I RS +L I+ND+LD++ I++G + L E + + Sbjct: 633 FTQLLGDETVGAL-NERQREYSEHIMRSSAALLVIINDILDLASIDAGSLELQRETIDVR 691 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 V A+ ++ E I + + + AD + V+QI N+LSNA+ F+ G Q+ Sbjct: 692 ATVEAAVRGIEDRLAESDIGLDLDVPEGVGSVFADGKRVRQILFNLLSNAVGFSAPGQQV 751 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + E+ L V D G G+ +++ F N+ + G GLGL + ++ V Sbjct: 752 RVE-ARREGRELRLTVTDRGRGIAPEVIDRVFDRFES--NTLGTKHRGVGLGLSIVRSFV 808 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810 + + G+ I S P GT + +FP+ Sbjct: 809 ELHGGRVEIHSAPGTGTRVTCLFPV 833 >gi|167746744|ref|ZP_02418871.1| hypothetical protein ANACAC_01456 [Anaerostipes caccae DSM 14662] gi|167653704|gb|EDR97833.1| hypothetical protein ANACAC_01456 [Anaerostipes caccae DSM 14662] Length = 811 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 87/259 (33%), Positives = 137/259 (52%), Gaps = 23/259 (8%) Query: 560 DISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV--- 609 D++E ++ + KL+ A +AE+ + K++FL+R+SHEIRTP+ AIIG + + Sbjct: 263 DVTELREIQRKLTEQAAALKDALTVAEQANKAKTEFLSRMSHEIRTPMNAIIGMTTIAAA 322 Query: 610 -IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 I +++ R + I S ++ ++ND+LD+SKI GKM + EP L+ V Sbjct: 323 YIDDRQ-------RVSDCLEKIGYSSKHLMTLINDILDMSKISEGKMKIAHEPFQLETVV 375 Query: 669 SEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQII- 726 S+V A++K ++ A+ ++ D + QI LN+LSNA+ FTP GG I Sbjct: 376 ESVSSIVYPQASDKGLVFTVPLADLTDTSLVGDSLRLNQILLNLLSNALKFTPEGGSIRM 435 Query: 727 -ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 I +++ V LR V DTG+GM + + PF Q S + GTGLG+ + K Sbjct: 436 EIRQIKKNSDTVCLRFTVSDTGIGMADEFISNLFHPFEQEDASTSQKYGGTGLGMSITKN 495 Query: 784 MVDANMGKFYIFSTPAKGT 802 +V G + S P KGT Sbjct: 496 LVTLMGGTISVKSKPGKGT 514 >gi|149198482|ref|ZP_01875527.1| hypothetical protein LNTAR_06609 [Lentisphaera araneosa HTCC2155] gi|149138488|gb|EDM26896.1| hypothetical protein LNTAR_06609 [Lentisphaera araneosa HTCC2155] Length = 591 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 90/254 (35%), Positives = 138/254 (54%), Gaps = 6/254 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 +IS K + +L K AE S KS FLA +SHEIRTPL AI+GF+E+ ++N + L Sbjct: 188 EISVRKDAEKELIAMKLRAEDASKAKSQFLANMSHEIRTPLGAIMGFNEILLENSK--SL 245 Query: 619 GNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 P Y Y NYID S +L ++N++LDISKIE K L E V L++ + + Sbjct: 246 ELPDYYPLYLNYIDNSLQYLLKVINNILDISKIEERKFKLKVEDVDLEKFFKNIVYTYKH 305 Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A EK+I I + + D ++Q+ +N+L NA FTP +++ T T +++ Sbjct: 306 LAEEKKINFIYKNTELIAKYVKIDPVKLQQVIINLLDNAFKFTPV-NKLVEMTVKTDDQK 364 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +I+ VRD G+G+ E K F Q+ +S +GTGLGL ++K ++ G + S Sbjct: 365 LIILVRDEGIGIPKEYQETIFKVFEQVDDSNTRSYQGTGLGLSISKKFIELMGGIISLES 424 Query: 797 TPAKGTLIEIIFPL 810 +G++ I PL Sbjct: 425 GINQGSMFSINLPL 438 >gi|121602765|ref|YP_989601.1| sensor histidine kinase [Bartonella bacilliformis KC583] gi|120614942|gb|ABM45543.1| sensor histidine kinase [Bartonella bacilliformis KC583] Length = 824 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 99/394 (25%), Positives = 199/394 (50%), Gaps = 24/394 (6%) Query: 429 PQNGIEP--EDVDTRIN-KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 PQ GI E++ +I+ +R+ + L+ S+G+ + +G + +N A+SKL+ Sbjct: 436 PQGGITWLYENLTEKIDLERRYNTLIKIQGETLDKLSEGVVVFGTDGRLCLSNPALSKLW 495 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 P + + +E + + + + + + + ++ G ++ S RI + Sbjct: 496 SLP--------YNLLVEGTHITQLQTHCSALTVGEEWKQFTQLITGFAEKRDARSGRIDL 547 Query: 546 KK--------LPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 + +P + + LT ++++ L + E +++F+ VS+E+ Sbjct: 548 RNGMIIDYTFVPLPNGQTMLTFVNVTDTVHIARALQEKNEALESTDRLRNEFVQHVSYEL 607 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPLT IIGFS+++++Q FG L N R EY +I N +L++VND+LD++ +++G M Sbjct: 608 RTPLTNIIGFSDILRDQMFGSL-NERQHEYLGHIQSESNTLLNLVNDILDLATLDAGIME 666 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716 L+ + V++ +A+++A++ ++ + N + IL + ++ I AD + QI +N+LSNA+ Sbjct: 667 LNIQSVNIVDAMAQAVTRIEEHLNGRHILFSQHISPSLDVIFADATRLHQIFVNVLSNAV 726 Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 +F P I H + ++ V + G + + L++ K F ++ G GL Sbjct: 727 NFAPEASTIEFC-AHKQDNHIVFSVHNEGSDIPSDILDRIFKRFS--SHAHHGGRAGAGL 783 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GL L K+ V+ + G I + +GT ++ F L Sbjct: 784 GLSLVKSFVELHGGYVEILTGTGQGTTVKCFFSL 817 >gi|284054106|ref|ZP_06384316.1| two-component hybrid sensor and regulator [Arthrospira platensis str. Paraca] Length = 385 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 123/225 (54%), Gaps = 19/225 (8%) Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 +GF++++K Q G L N R + +I++SG +L ++ND+LD+SKIESGK L+ E V+ Sbjct: 1 LGFADLLKRQNSGTL-NSRQLNQVQFIEKSGLHLLQLINDILDLSKIESGKTELNLELVN 59 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 + E SE + +VQ A++K + + I + L D R V+QI +N+LSNAI FTP GG Sbjct: 60 IHELCSECLKMVQPRADKKCLALSLESDYRITQALLDKRRVRQIIINLLSNAIKFTPEGG 119 Query: 724 QIIIST------------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 ++ +S + S + L V+D+G+G+ +PF QI + Sbjct: 120 KVRLSGHLAYGSQIDGDYRPDCSPINDSTPYLCLEVQDSGIGIPQDRWHLLFQPFQQIDS 179 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 S R EGTGLGL L K + + + G + S +G+ + PL Sbjct: 180 SLTRRHEGTGLGLLLTKRLAELHGGTVSLQSQVNQGSRFRVWLPL 224 >gi|238917554|ref|YP_002931071.1| two-component system, unclassified family, sensor kinase [Eubacterium eligens ATCC 27750] gi|238872914|gb|ACR72624.1| two-component system, unclassified family, sensor kinase [Eubacterium eligens ATCC 27750] Length = 854 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 83/248 (33%), Positives = 138/248 (55%), Gaps = 9/248 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q + + A AE + KS FLA +SH+IRTP+ AI+GFS+++ P + Sbjct: 451 QQIRGHMEDALHTAEAANLAKSQFLANMSHDIRTPMNAIVGFSQLLLRHEKNP---DKVK 507 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR- 683 +YA I S +L+++ND+LD+SKIESG L+ V++ + V E ++++ A +K+ Sbjct: 508 KYAEKIVISSQHLLNLINDVLDMSKIESGNTTLNLSDVNIADIVQEIDNIIRPQAKQKKQ 567 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNE--EVI 738 LI +S I D + QI LNILSNA+ +TP G I I HT ++ + Sbjct: 568 TLIISSDNVEYGWIKTDKLRLNQILLNILSNAVKYTPEYGMITFEIRGMNHTGSQFAKYK 627 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 ++ D G+GM++ +++ KPF + N+ +GTGLG+P+ K ++D G + S Sbjct: 628 FKISDNGIGMSDGYIKEIFKPFTREDNNVTDNVQGTGLGMPITKNLIDLMGGTIKVKSKK 687 Query: 799 AKGTLIEI 806 +G+ E+ Sbjct: 688 GEGSTFEV 695 >gi|154252416|ref|YP_001413240.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154156366|gb|ABS63583.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 846 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 84/265 (31%), Positives = 142/265 (53%), Gaps = 18/265 (6%) Query: 559 HDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 H + +QE+ KL+ AK+ AE + KS FLA +SHE+RTP+ ++G ++++ Sbjct: 400 HTSLQLEQERAKLTRTAQDLSIAKEAAENANRAKSAFLATMSHELRTPMNGVLGMADLLL 459 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + GPL + + I SG +L I+ND+LD+SK+E+G++ L EP S + Sbjct: 460 S---GPLTQEQR-DGVTTIRESGECLLTILNDILDLSKLEAGRLELEPEPTSPMTVLETV 515 Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + +++ A EK +++ S +IP RI++D ++QI N++ NAI FTP G++ +S Sbjct: 516 VEVLRPNAKEKGLVLTKSEEGHIPQRIMSDPTRLRQILFNLVGNAIKFTPQ-GEVSVSLA 574 Query: 731 HTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + E++ VRDTG+G+ L + F Q +S GTGLGL + + + Sbjct: 575 ARACDDPDTAELVFTVRDTGIGIPEAMLPRLFTRFQQADSSISRTYGGTGLGLAITRELT 634 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810 G + ST KG+ + P+ Sbjct: 635 TLMNGTIEVESTEGKGSCFTVRLPV 659 >gi|28868897|ref|NP_791516.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. tomato str. DC3000] gi|28852136|gb|AAO55211.1| sensor histidine kinase/response regulator GacS [Pseudomonas syringae pv. tomato str. DC3000] Length = 917 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 138/237 (58%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR +Y Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQFDYLAT 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K + + + Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKHLELVSL 385 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 + P L+ D ++QI N++SNAI FT G + + EE + + V+DTG Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ ++ + F Q NS + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 502 >gi|85714073|ref|ZP_01045062.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] gi|85699199|gb|EAQ37067.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] Length = 752 Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 100/366 (27%), Positives = 166/366 (45%), Gaps = 17/366 (4%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E E C + E+ D I + + GII S N A L D+L F + + + S Sbjct: 104 EAEERSRC-LFESQGDLIVLRDGNGIITSVNDAYCILAQRSRADLLGIRFALPVLEQGES 162 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWK 565 V+ T + Q +E LG + ++ R + ++ + L D+++ Sbjct: 163 VIEANGTRVYD----QRVET-ALGP----RWIAWREALMRIDANHPAELQCVGRDVTDRT 213 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + K L A+ A + KS FLA SHE RTPL IIG S ++ P Sbjct: 214 EAKRALGEARDHANAANQAKSRFLAMTSHEFRTPLNGIIGMSGLLLETAL----TPEQTT 269 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y + SG+ +L ++ +LLD S+IE+GK++L P L + + + L+ A +++ Sbjct: 270 YVKAVKASGDALLSLIEELLDYSRIEAGKIDLEHRPFILSDLIEDITELLAPRAQARQLA 329 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 I + +P ++ D ++Q+ LN+ NAI FT +GG +I T ++ VRDT Sbjct: 330 IASYIDETLPTEVIGDAARLRQVLLNLAGNAIKFTSTGGVALIVTPGVGRNDIRFMVRDT 389 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + F Q G+GLGL ++ +V G + S P G+ Sbjct: 390 GIGIAPDAQARIFRDFEQADGQIARNYGGSGLGLSISDRIVKRMGGHITLQSEPGSGSTF 449 Query: 805 EIIFPL 810 E+ PL Sbjct: 450 EVSVPL 455 >gi|163739314|ref|ZP_02146725.1| sensor histidine kinase/response regulator [Phaeobacter gallaeciensis BS107] gi|161387384|gb|EDQ11742.1| sensor histidine kinase/response regulator [Phaeobacter gallaeciensis BS107] Length = 764 Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 85/268 (31%), Positives = 151/268 (56%), Gaps = 12/268 (4%) Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 LR++ ++ SL + DI+ Q + +L A++ AE + KS FLA +SHEIRTP+ Sbjct: 173 LRLLDQRGHGGDMVSLAL-DITSTVQYEEELQAARERAEAANRAKSAFLANMSHEIRTPM 231 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 ++G +E++ + L + + + YAN I SG +L I+ND+LD SKIE+ K+ LH E Sbjct: 232 NGVVGMAELLSDTN---LSDEQQL-YANTIKNSGEALLVIINDVLDYSKIEAQKLELHPE 287 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFT 719 P L+ +V E + L+Q A +K + + + +P + D ++Q+ N++ NA+ FT Sbjct: 288 PFDLERSVHEVLMLLQPTARDKGLTLLLDYDLFLPTSFVGDPGRIRQVLTNLVGNAVKFT 347 Query: 720 PSGGQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 S G + + T SN + + + DTG+G+ +++ F Q+ + + + EGT Sbjct: 348 -SEGHVALQITGISNAGDKICSIHVTIEDTGIGIPEEKVQDIFGEFNQVEDERNRQFEGT 406 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GLGL ++K +++ G+ ++ S KG+ Sbjct: 407 GLGLAISKRLIELMGGEIWVESQEGKGS 434 >gi|323483856|ref|ZP_08089233.1| histidine kinase [Clostridium symbiosum WAL-14163] gi|323402810|gb|EGA95131.1| histidine kinase [Clostridium symbiosum WAL-14163] Length = 939 Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 138/253 (54%), Gaps = 17/253 (6%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + L A + A++ + KS+FLA++SH+IRTPL AI G S + +Q P + + Sbjct: 537 RKALLAAYEAAKQANEAKSNFLAQMSHDIRTPLNAITGMSSIALSQAEDP---EKVRDCL 593 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I S + +++++ND+LD+SKIE GK+ L P SL E + + S++ A K+ + Sbjct: 594 KKITLSSHHLIELINDVLDMSKIEKGKLELAEAPFSLKELLGDVESILSPQACAKKQEL- 652 Query: 688 TSFANNIPR-----ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EV 737 F N P+ + D ++Q+ +N+++NAI +TP GG+I I+ S+ + Sbjct: 653 -CFHN--PKSPHDHLCGDAGRIRQVLINLITNAIKYTPDGGRIDIAVQEVSSHLQGYGCL 709 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V DTG+GM+ L+ PF + +++ +GTGLG+P+A +V A G + S Sbjct: 710 VFTVADTGIGMSKDFLDYIFVPFSRAEDAKACHIQGTGLGMPIALGIVTAMQGNIQVESE 769 Query: 798 PAKGTLIEIIFPL 810 P KG+ + L Sbjct: 770 PGKGSRFTVTLHL 782 >gi|86136340|ref|ZP_01054919.1| sensory box sensor histidine kinase/response regulator [Roseobacter sp. MED193] gi|85827214|gb|EAQ47410.1| sensory box sensor histidine kinase/response regulator [Roseobacter sp. MED193] Length = 536 Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 80/241 (33%), Positives = 130/241 (53%), Gaps = 9/241 (3%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK+ AE+ + K FLA +SHEIRTP+ I+G E++K + +A+ I S Sbjct: 137 AKEKAEEANKAKERFLANMSHEIRTPMNGILGICELLKETEL----DKEQSLFADTIFNS 192 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 N +L+I+ND+LD S+I + K++LH EP SL + E L+ K + ++ N Sbjct: 193 TNALLEIINDVLDFSQITADKISLHPEPFSLRVLIEEIAVLLSAKTAYKGLKFNVNYPEN 252 Query: 694 IPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMT 749 +P + + D+ V+QI LN++ NAI FT G + I+ +H + + DTG G+ Sbjct: 253 VPSLFIGDVSKVRQILLNLIGNAIKFTDE-GHVSITVSHGQGSPAGPLQFEIADTGCGIE 311 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L F ++ +Q+ EGTGLGL +++A+V+ G+ + STP GT + Sbjct: 312 ASKLGTIFSAFERVSGTQKNLSEGTGLGLAISQALVERMGGEISVKSTPDLGTTFRVSLA 371 Query: 810 L 810 L Sbjct: 372 L 372 >gi|157148322|ref|YP_001455641.1| hybrid sensory histidine kinase BarA [Citrobacter koseri ATCC BAA-895] gi|157085527|gb|ABV15205.1| hypothetical protein CKO_04139 [Citrobacter koseri ATCC BAA-895] Length = 918 Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 134/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + N ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTEL----NTTQRDHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI--LRVRDTG 745 N++P ++ D ++Q+ N++ NAI FT SG I++ SN +V +++RDTG Sbjct: 394 IKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEIQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|149908724|ref|ZP_01897385.1| hypothetical two-component sensor [Moritella sp. PE36] gi|149808266|gb|EDM68205.1| hypothetical two-component sensor [Moritella sp. PE36] Length = 768 Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 80/240 (33%), Positives = 133/240 (55%), Gaps = 8/240 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK+ AE + KS+FLA +SHEIRTP+ +IG + +++ P+G + E+ + Sbjct: 229 ELETAKRQAEDANLKKSEFLANMSHEIRTPMNGVIGTASLLQEM---PMGREQK-EFVDM 284 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + S +LD++ND+LD SKIESG++ L P++L E E S + A +K+I + Sbjct: 285 LYSSSITLLDLINDILDFSKIESGQLILAKNPLNLFELCKEIESNFSIIARQKQIALVCH 344 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTG 745 +NIP +L D+ ++Q+ N+LSNAI FT G I + +N ++ ++ D+G Sbjct: 345 IDDNIPDMVLGDITQLRQVLNNLLSNAIKFTSIGCVRLNIKLMDRKDNNAGIMFQIIDSG 404 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ +K + F Q S GTGLGL + +++V ++S P KG+ E Sbjct: 405 IGIAAENQQKIFEKFQQADGSTTRNYGGTGLGLAICRSIVKLMDSDILVYSKPGKGSRFE 464 >gi|323698979|ref|ZP_08110891.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323458911|gb|EGB14776.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 672 Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 82/254 (32%), Positives = 137/254 (53%), Gaps = 15/254 (5%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 ++ AK+ AE ++ KS FLA +SHEIRTP+ AI+G ++++ + A Y Sbjct: 274 QVRRAKQAAEVANAAKSSFLASMSHEIRTPMNAILGMADILWETELSE-------DQARY 326 Query: 630 ID---RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 +D +G +L+I++D+LD+SKIE+G + L L E + ++Q A++K + + Sbjct: 327 VDVFRTAGENLLEILDDILDLSKIEAGHLTLEKTWFPLTEILDRTCGVIQTKASKKGLGL 386 Query: 687 RTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VR 742 A +P RI D ++Q+ N+L NAI FT +G + + +E V+L + Sbjct: 387 SCVAAPEVPARINGDPTRLRQVLFNLLGNAIKFTDAGSVAMNVDIASRDDEGVVLHFSIT 446 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTGVG++ +L + F Q +S + GTGLGL ++K +V G+ + STP KG+ Sbjct: 447 DTGVGVSGDKLGAIFEAFTQADSSTTRQFGGTGLGLAISKELVQMMGGRIWAESTPGKGS 506 Query: 803 LIEIIFPLYDTSHP 816 +DT+ P Sbjct: 507 TFHFT-ARFDTARP 519 >gi|307316590|ref|ZP_07596033.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium meliloti AK83] gi|306897788|gb|EFN28531.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium meliloti AK83] Length = 917 Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 116/387 (29%), Positives = 191/387 (49%), Gaps = 23/387 (5%) Query: 439 DTRINKRKMEIEVMQ----LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 ++ I K+K+E E + + + LE SDG + + E IL N ++F + LR Sbjct: 267 ESAIEKKKLEDEAERQRRTIAAALEVISDGFVLYDSEDRILVANSKYCEIFPSHKPNTLR 326 Query: 495 -KPFTVFLEQNTPSVMNHYLTEILS----LDLRQTLEKITLGSTKEEKLLS--LRIIIKK 547 + F +EQN M E S +D R L + G E++ +RI +K Sbjct: 327 GRSFREIVEQNLE--MGQVDLEGKSPQEWVDERVRLHRDPAGLVDEKRFGDKWVRISKRK 384 Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 +P ++ DI+E KQ + +L AK AE + KS FLA +SHE+RTPL AIIG+S Sbjct: 385 IPDGGTVAV-YTDITELKQRQVELERAKSHAESANEAKSRFLASMSHELRTPLNAIIGYS 443 Query: 608 E-VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 E +I+ R + + + I +G +L ++ND+LD+SKIE+ KM + E S+ + Sbjct: 444 EMLIEEARDHE--DEELVPDLDKIASAGRHLLSLINDILDLSKIEANKMEVFLETFSVAD 501 Query: 667 AVSE-AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + + A ++ L A L + F ++ + +D ++Q N+LSNA FT +GG++ Sbjct: 502 LLRDVAATVAPLMARNGNELTQ-DFETDLGEMHSDQTKLRQNLFNLLSNAAKFT-NGGRV 559 Query: 726 IISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 + + ++ +V DTG+GM+ + E+ F Q S GTGLGL + + Sbjct: 560 TLRVRREQRADRDWLVFQVTDTGIGMSPEQQERLFNAFTQADASTTRNYGGTGLGLSITR 619 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 + G + S KG++ I P Sbjct: 620 SFCRMIGGVVTVESEVGKGSVFTIEVP 646 >gi|325982034|ref|YP_004294436.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212] gi|325531553|gb|ADZ26274.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212] Length = 1236 Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 115/436 (26%), Positives = 198/436 (45%), Gaps = 40/436 (9%) Query: 405 WNRENSLAMTF-IPFEKANQFPENMP-QNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462 W+ LA TF + E+ N N+ +N + D + + I+ ++ S++E Sbjct: 369 WDEMRQLAQTFNLMVERLN--ASNLELENRVAARTADLQRANSALAIKEEEMRSVVEHMV 426 Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS--------------- 507 D + + G ILS N + KLFGY ++++ + ++ + + S Sbjct: 427 DCVVTTDEIGKILSVNPVMEKLFGYSHDEMIGQNVSIIVPEPDRSKHISYMENYCRTGHG 486 Query: 508 ---VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDIS 562 V YL+ + + +E I + E L++ + ++ F+ M DI Sbjct: 487 QEYVGRPYLSGSHGIGRGREVEGIRKNGERIEIYLAVSEYYVGEERHFTGV----MRDIR 542 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + N L A+ AE+ + KS FLA +SHEIRTP+ +IG +V++ Sbjct: 543 EHVRIMNDLQQARIEAEQANKAKSAFLAAMSHEIRTPMNGVIGMIDVLRQTSL----TGY 598 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +E AN I S +L I+ D+LD SKIE+GK+ + P+SL V A ++ A K Sbjct: 599 QMEMANLIRDSAYSLLSIIEDILDFSKIEAGKLEIEKIPMSLANIVENACGMLAHVALSK 658 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS-------GGQIIISTTHTSN 734 ++ + IP +L D ++QI +NI++NAI F+ +++++ ++ Sbjct: 659 KVELTLFIDPEIPENMLGDPLRLRQILVNIINNAIKFSSKQEKQGKVSVRVLLTESNPDQ 718 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V ++ D G+GM EK K F Q S R GTGLGL ++ + + + + Sbjct: 719 VVVTFQITDNGIGMNKETQEKLFKSFSQGDPSTTRRFGGTGLGLAISHHLAELMDAEITV 778 Query: 795 FSTPAKGTLIEIIFPL 810 S P G+ I P Sbjct: 779 QSAPQHGSTFIIQMPF 794 >gi|167748905|ref|ZP_02421032.1| hypothetical protein ANACAC_03679 [Anaerostipes caccae DSM 14662] gi|167651527|gb|EDR95656.1| hypothetical protein ANACAC_03679 [Anaerostipes caccae DSM 14662] Length = 940 Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 129/231 (55%), Gaps = 12/231 (5%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE +S KS+FL+++SHEIRTP+ AI G +++++ + P G ++ I S + Sbjct: 560 AEAKSRAKSEFLSQMSHEIRTPMNAITGLTDLLRMEEKLPDGAREKLQK---IHASSQYM 616 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696 L ++ND+LD+SKIE+GK+N+ E SL E + I ++++ A EK+ I F I Sbjct: 617 LSLINDILDMSKIENGKLNIEPEDFSLTELLDGLIEMMEVQAEEKQ--IHFEFVREIEHD 674 Query: 697 -ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNY 751 + D ++Q+ N+LSNA FT GG++ ++ S E V+D G+G+ Sbjct: 675 FVTGDPIRLRQVLTNLLSNAFKFTKHGGRVTLTVREEHRDVSTGEYFFSVKDNGIGIAQD 734 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 ++ + F Q+ S R EGTGLGLP++ +++ A G + S KG+ Sbjct: 735 RQKQIFEAFEQLGASSA-RSEGTGLGLPISSSIIKAMGGNLMVESQTGKGS 784 >gi|330826610|ref|YP_004389913.1| PAS/PAC sensor signal transduction histidine kinase [Alicycliphilus denitrificans K601] gi|329311982|gb|AEB86397.1| PAS/PAC sensor signal transduction histidine kinase [Alicycliphilus denitrificans K601] Length = 829 Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 83/243 (34%), Positives = 128/243 (52%), Gaps = 18/243 (7%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY---- 629 A+ A++ S KS+F+A +SHE+RTPL +I+GFSE LG R +Y Y Sbjct: 585 ARYKAQEASRTKSEFVANISHELRTPLQSILGFSE---------LGMVRARQYEKYAAMF 635 Query: 630 --IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I +G +L +VNDLLDISKIES F + + + + + +Q+ K + +R Sbjct: 636 QDIHAAGQRMLGLVNDLLDISKIESTVGAFRFARNDVRDLLEDVAAELQMLLERKGLTLR 695 Query: 688 TSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 +P + D Q+A N+LSNA+ F+P GG I +S + ++++VRD G Sbjct: 696 LDL-GRVPLVSKVDSTRFAQVARNVLSNAVKFSPEGGTIEMSASTPDESTILVQVRDHGP 754 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ ELE F Q ++ G GTGLGL + + +V A+ G + + P GT+ I Sbjct: 755 GIPPAELEAVFDAFVQSSKTRDESG-GTGLGLAICRKIVTAHGGHIHATNAPDGGTIFHI 813 Query: 807 IFP 809 + P Sbjct: 814 VLP 816 >gi|262277330|ref|ZP_06055123.1| periplasmic sensor hybrid histidine kinase [alpha proteobacterium HIMB114] gi|262224433|gb|EEY74892.1| periplasmic sensor hybrid histidine kinase [alpha proteobacterium HIMB114] Length = 998 Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 93/291 (31%), Positives = 148/291 (50%), Gaps = 12/291 (4%) Query: 526 EKITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 E+I LG E + R I +L F+ + D+ +++K +S K+ AE+ + Sbjct: 447 ERIKLGYYSERARVQTRDEIGELSKSFNEMVNAVETDVIRREKDKQTVSVLKEEAEQANK 506 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS FLA +SHE+RTP+ AIIG+SE++ + + YI I+ +G +L ++ND Sbjct: 507 AKSAFLANMSHELRTPMNAIIGYSEIL-TEDATDNQHQEYIPDLKKINSAGKHLLQLIND 565 Query: 644 LLDISKIESGKMNLHFEPVSL----DEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699 +LDISKIE+GKM L + ++ E + +LV N +I+ S I I Sbjct: 566 ILDISKIEAGKMELDIQDINFTSLAQEVADTSDALVTKNGNTLKIIKDES----IQGITG 621 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMK 758 D +KQI N++SNA FT +G + T+ + + + V+DTG+G+ + K + Sbjct: 622 DSVKIKQILFNLISNAAKFTENGTITLGYKTYQDDNNFLSIYVQDTGIGIEKDKAAKVFE 681 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 FGQ +S + GTGLGL L K + G + S KG+ + P Sbjct: 682 EFGQADSSTTRKYGGTGLGLSLVKKFSELMGGSIKLESEIGKGSTFTVTIP 732 >gi|160887321|ref|ZP_02068324.1| hypothetical protein BACOVA_05339 [Bacteroides ovatus ATCC 8483] gi|156107732|gb|EDO09477.1| hypothetical protein BACOVA_05339 [Bacteroides ovatus ATCC 8483] Length = 657 Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 92/264 (34%), Positives = 136/264 (51%), Gaps = 16/264 (6%) Query: 549 PFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 PF L + HDI + Q +L AK+ AE KS FLA +SHEIRTPL AI+GFS Sbjct: 267 PFEGNRVLALIHDIGDRIQRSQELIEAKRRAEDADKMKSVFLANMSHEIRTPLNAIVGFS 326 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 E+I G EY I R+ NL+L ++ND+LD+S+IESGK +HF+ V + Sbjct: 327 EIIAVTE----GEEEKREYLEIIQRNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGL 382 Query: 668 VSEA--ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 V E + +++ +N + +IR D V Q+ N LSNAI T G I Sbjct: 383 VEEVEKVHQLKMKSNVELKVIRPEGEYWTS---TDRNRVMQVLFNFLSNAIKNTEKGS-I 438 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + H + L V DTG G++ +L + F ++ + Q GTGLGL + K++V Sbjct: 439 TLGLKH-EGPWLKLYVSDTGCGISKEKLPQIFTRFEKLNDFVQ----GTGLGLSICKSIV 493 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + G+ + S +G++ + P Sbjct: 494 ERLGGRIEVTSELGQGSVFALYLP 517 >gi|332140190|ref|YP_004425928.1| PAS signal transduction protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550212|gb|AEA96930.1| PAS signal transduction protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 962 Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 104/376 (27%), Positives = 188/376 (50%), Gaps = 18/376 (4%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF--TVFLEQNTPSVMNHYL 513 SI ++ +G+ +N EG N A S+L G+ +E++ + F TV ++ +++ Sbjct: 134 SITDSIGEGVYAVNAEGKTQFLNPAASRLLGWTLEELQDRRFHDTVHYQKGDGTLLKREQ 193 Query: 514 TEILSLDLRQTLEKIT---LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQ 566 + +L +R + + K +L + I+ L + + +DIS K Sbjct: 194 CPV-NLTIRDGKSYTSYEDFFTDKRGRLFPISIVAVPLLNNEGKPDGHVGVFNDISSQKA 252 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 ++KL A A+ + K+DFLA +SHEIRTP+ AIIG + + + N + +Y Sbjct: 253 IEHKLQKAYDEAQSANKAKTDFLATMSHEIRTPMNAIIGLTHLALETQ----DNDQRQQY 308 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-L 685 + +S N +L+++N +LD SK+E+ K+++ EP +L + + + + Q+ A +K++ L Sbjct: 309 LEKVQKSSNALLELMNSILDFSKVEANKIDILDEPFTLTKTIDKLAQVFQVKAQQKQLQL 368 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + + R D + Q+ LN+LSNAI FT + G +++ N E+ V DTG Sbjct: 369 LFDIRCSTKIRCSGDSEKIYQVLLNLLSNAIKFTET-GHVLLKIDKRGN-ELGFSVSDTG 426 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+++ K F Q S + GTGLGL + K +V+ G+ I S +GT Sbjct: 427 MGISDTGKTKLFNAFEQADASISRKFGGTGLGLAICKRLVELMGGELTIESKVNEGTNFA 486 Query: 806 IIFPL-YDTSHPHDCI 820 P+ + + P D + Sbjct: 487 FSLPICIEDTEPSDSL 502 >gi|270157008|ref|ZP_06185665.1| legionella transmission sensor LetS [Legionella longbeachae D-4968] gi|269989033|gb|EEZ95287.1| legionella transmission sensor LetS [Legionella longbeachae D-4968] Length = 868 Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 136/246 (55%), Gaps = 9/246 (3%) Query: 563 EWKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E +EKN +LS KK E++S KS+F+A +SHEIRTP+ +IGF+ V+ + PL Sbjct: 274 ELLEEKNIELSLEKKKIEEKSRQKSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL--- 330 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 ++Y I S +L I+ND+LD SKI++GK++L P+++ + E ++L A++ Sbjct: 331 -QLDYVKTIKSSAQDLLGIINDILDFSKIDAGKLHLDCIPLNIRHCIDEVLALAAPNAHK 389 Query: 682 KRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---V 737 K I + N+P+I L D VKQ N+++NA+ FT G +I + E+ + Sbjct: 390 KGIDLIPITELNVPKIVLGDPFRVKQFISNLVTNAVKFTDHGYVLIRTNVEQETEKDYTL 449 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + + DTG+G++ + K F Q S R G+GLGL + K + + G+ S Sbjct: 450 CITITDTGLGISPEDQSKLFTAFNQADTSITRRYGGSGLGLVICKKLCEEMKGRITFASE 509 Query: 798 PAKGTL 803 KG++ Sbjct: 510 LNKGSV 515 >gi|298528782|ref|ZP_07016186.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298512434|gb|EFI36336.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1037 Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 77/270 (28%), Positives = 138/270 (51%), Gaps = 11/270 (4%) Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + +P Y + DI++ K++K +L AK+ AE + KS FLA +SHE+RTP I+G Sbjct: 623 ESMPVGMVY--VIRDITDRKRDKKELLKAKEQAEAANQAKSRFLANMSHELRTPFNGIMG 680 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 ++++ + EY + +S +++D+LD+S +E+G+M++ L Sbjct: 681 MMQLLQTTTL----DEEQQEYVDMAIKSSQRFARLLSDILDLSSVETGRMSIFNSEFDLG 736 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ 724 EA+ + A EK + + +++P +++ D VKQI + ++SNA+ FT G Sbjct: 737 EALGSIHDIFDASAREKGVFLEYLPGDDVPAKVIGDAVRVKQILITLVSNALKFTEKGVV 796 Query: 725 II----ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 I + + + V DTG+G+ +L+ PF Q+ S + +G GLGL + Sbjct: 797 EIRLDALCAAKGGDVRIKFAVSDTGIGIPEDQLKNLFTPFEQLDGSYTRKHQGAGLGLSI 856 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 K +V+ G I S P +GT + ++ P Sbjct: 857 VKRLVELMNGNIDIDSLPGEGTTVHVVLPF 886 >gi|253700345|ref|YP_003021534.1| histidine kinase [Geobacter sp. M21] gi|251775195|gb|ACT17776.1| histidine kinase [Geobacter sp. M21] Length = 1361 Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 80/260 (30%), Positives = 130/260 (50%), Gaps = 11/260 (4%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H E + L K+ E+ + KS+FL+ +SHE+RTPL +++ S V+ Q Sbjct: 560 HQSEELSRHNQVLDLQKQQLEEATRLKSEFLSNMSHELRTPLNSVLALSRVLAVQ----- 614 Query: 619 GNPRYIE----YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 G+ R E Y + I+R+G +L ++ND+LD++KIESG+ + E VSL + +E + Sbjct: 615 GSSRLTEDEKGYLSIIERNGKHLLSLINDILDLAKIESGRQEVFLESVSLRKVAAEVVDG 674 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 + + A EK I + +P + D++ ++Q+ N++ NAI FT G + Sbjct: 675 LSVLAREKGIALSLEAPEGLPAAVIDVKRLRQMLQNLIGNAIKFTAEGS--VTVRLDAEG 732 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 EE ++ V DTG+G+ LE F Q S EGTGLGL + K G + Sbjct: 733 EEFLIEVEDTGIGIAPQYLESIFHEFRQADGSTSRSFEGTGLGLAIVKKTARLLGGDVSV 792 Query: 795 FSTPAKGTLIEIIFPLYDTS 814 S +G++ + P T Sbjct: 793 RSELGEGSVFTLRLPCDGTG 812 >gi|292488814|ref|YP_003531701.1| Two component sensor kinase/response regulator protein RcsC [Erwinia amylovora CFBP1430] gi|291554248|emb|CBA21540.1| Two component sensor kinase/response regulator protein RcsC [Erwinia amylovora CFBP1430] Length = 987 Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 87/264 (32%), Positives = 140/264 (53%), Gaps = 11/264 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG +++K + P G Sbjct: 478 DVSARVKMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTKAL-PAG 536 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + N S +L+L I++D+LD SKIES ++ + S E ++ + A Sbjct: 537 ADSLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLAMA 593 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +KR+ + +++P +L D ++Q+ N+L+NAI FT +GG II + + + Sbjct: 594 VKKRLTLWCFIDSDVPVLLEGDPMRLQQVISNLLNNAIKFTHTGG--IILQAYVKGDYLA 651 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 RVRD+GVG+ E+ + PF Q+ + Q +GTGLGL + + +++ G + S P Sbjct: 652 FRVRDSGVGIPAKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLMNMMDGDIEVESEP 711 Query: 799 AKGTLIEIIFPLYD----TSHPHD 818 G+ I PLY+ T P D Sbjct: 712 GMGSQFIIRIPLYNSRVVTLEPRD 735 >gi|242280815|ref|YP_002992944.1| histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123709|gb|ACS81405.1| histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 568 Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 129/233 (55%), Gaps = 7/233 (3%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L K AE S K++FLA +SHEIRTP+ +I+G E++K + E+ N Sbjct: 331 LQEEKAKAETASKVKTEFLANMSHEIRTPMHSILGMVELLKETNV----DEEQREFLNIA 386 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 +G +L+I+ND+L+ISKIE+G + + L E V +S+ L A K + + Sbjct: 387 GTAGESLLEIINDVLEISKIEAGHLQIERHEFLLREMVERVVSVFALDAARKGLKLVCHI 446 Query: 691 ANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 N+P +++ D ++Q+ N++SNA+ FT G I+ + + E++I V+D G+G+ Sbjct: 447 DENVPDKVVGDATRIRQVLNNLISNAVKFTSEG--TIVVSIYWEAEKLIFAVKDEGIGIA 504 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 ++ + F Q +S + GTGLGLP+++ +V G+ ++ S+ +GT Sbjct: 505 ADKINYIFESFTQADSSTSRKYGGTGLGLPISRKLVSMMGGEIFVCSSVGEGT 557 >gi|117924896|ref|YP_865513.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117608652|gb|ABK44107.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 964 Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 83/254 (32%), Positives = 141/254 (55%), Gaps = 8/254 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L +I+ K+ + L AK+ AE+ + KS FLA +SHEIRTP+ ++IGFS + Sbjct: 278 LGFAEITTLKKVQADLLLAKEQAEEATRAKSAFLANMSHEIRTPMNSVIGFSHLALKTNL 337 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + + +Y N I S +L ++ D+LD SKIE+GK+ + P +LDE + +L Sbjct: 338 ----DKQQSDYLNKILFSARSLLGLIGDILDFSKIEAGKLTVESLPFTLDEMLDSVAALN 393 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS 733 A EK + + S ++N+P+ ++ D + Q+ N++SNA+ FT G Q+++ H Sbjct: 394 ANRAEEKGLDLIFSHSSNLPQALIGDPLRLGQVLTNLVSNAVKFTTEGHVQVLVEPLHQQ 453 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 +E++L+ V D+G+GM++ ++ PF Q+ S R GTGLGL + + +V+ G Sbjct: 454 EQELLLKFSVIDSGMGMSSEQVSLLFTPFTQVDVSHTRRFGGTGLGLAICRNLVEMMGGS 513 Query: 792 FYIFSTPAKGTLIE 805 + S G+ E Sbjct: 514 ISVRSQEQVGSHFE 527 >gi|88858789|ref|ZP_01133430.1| putative sensor protein [Pseudoalteromonas tunicata D2] gi|88819015|gb|EAR28829.1| putative sensor protein [Pseudoalteromonas tunicata D2] Length = 1027 Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 96/373 (25%), Positives = 181/373 (48%), Gaps = 30/373 (8%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI-LRKPFTVFLEQNTPSVMNHYLT 514 +I+ +SD I +++ G ILS N + + F +RK + T ++ LT Sbjct: 369 AIVAGSSDAIINVDKSGTILSWNDSAAYFFDLRENQAQVRKISNIVFSHETNALDTDVLT 428 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLR---IIIKKLPFSSCYSLTMHDIS--------- 562 ++ Q E + + E+++LS+ +I + + + + DI+ Sbjct: 429 SVIEQKKPQVFEVEGISNAGEKRILSISLSPVISQSTVIAPSVAALIRDITASRMNEIKI 488 Query: 563 ---------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + + +L HA ++A + KS F+A +SHEIRTPL I G E+++ + Sbjct: 489 QSMNQSLELQVAERTQELKHATELAIAANQSKSAFVANISHEIRTPLNGIAGMMELLQRE 548 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + + + Y S + + ++NDLLD+SKIESGK+++ +L E +S I+ Sbjct: 549 DL----SDKQLNYLKMAKSSVSTLTVLINDLLDLSKIESGKLDIELVQFNLIETMSSVIN 604 Query: 674 LVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + L +EK + + + +++D +KQ+ +N++ NAI FT G ++ + T+ Sbjct: 605 SMALRCDEKGLELLFDWTQIQHEELISDAYRIKQVLVNLIGNAIKFTAQGQIVVSAKTYA 664 Query: 733 SNEEVI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + +E I + + DTG+G+T + K +PF Q + GTGLGL +++ +V Sbjct: 665 AAQEQIWLEVVITDTGIGLTPEQQAKLFRPFTQAHANIAKNFGGTGLGLSISQQLVQLLG 724 Query: 790 GKFYIFSTPAKGT 802 G+ I S +G+ Sbjct: 725 GEITIHSVVEQGS 737 >gi|284035951|ref|YP_003385881.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283815244|gb|ADB37082.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 1131 Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 82/264 (31%), Positives = 140/264 (53%), Gaps = 15/264 (5%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + L+ + E S +KS FLA +SHE+RTPL +++ ++++ + + L + IEYA Sbjct: 438 RQSLALKARELEVTSQYKSAFLANMSHELRTPLNSVLILAKLLADNKPDNL-TAKQIEYA 496 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I RSGN +L ++ND+LD++KIE+G + + E V + V + L + A EK++ + Sbjct: 497 TIIHRSGNDLLTLINDILDLAKIEAGHITVLRESVPVKSIVRDLTQLFTVVAEEKKVQLI 556 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR------ 740 T ++P IL D ++QI N+LSNA FTP G+I +S + ++ I R Sbjct: 557 TKLHESVPAEILTDRLRIEQILKNLLSNAFKFTPRDGRITLSLSVETSFPKITRQELRKE 616 Query: 741 -------VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 V DTG+G+ + + + F Q+ S + GTGLGL +++ ++ G+ Sbjct: 617 KSLLAIAVSDTGIGIPADKQQLIFEAFQQVDGSTSRKYGGTGLGLSISRELIKRLGGEIT 676 Query: 794 IFSTPAKGTLIEIIFPLYDTSHPH 817 + S KG+ + PL + P Sbjct: 677 LHSEEGKGSTFTLWLPLSLSVTPQ 700 >gi|218532773|ref|YP_002423589.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium chloromethanicum CM4] gi|218525076|gb|ACK85661.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium chloromethanicum CM4] Length = 842 Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 78/265 (29%), Positives = 137/265 (51%), Gaps = 5/265 (1%) Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + LP + LT D++ + L+ E+ S + F+ VS+E+R+PLT IIG Sbjct: 569 QPLPLGATL-LTFIDVTASANVERALTEKNDALERASQLRDTFVHHVSYELRSPLTNIIG 627 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 F++++ ++ G L N R EY+ +I RS +L I+ND+LD++ I++G + L E + + Sbjct: 628 FTQLLGDETVGAL-NERQREYSEHIMRSSAALLVIINDILDLASIDAGSLELQRETIDVR 686 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 V A+ ++ E I + + + AD + V+QI N+LSNA+ F+ G Q+ Sbjct: 687 ATVEAAVRGIEDRLAESDIGLDLDVPEGVGSVFADGKRVRQILFNLLSNAVGFSAPGQQV 746 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + E+ L V D G G+ +++ F N+ + G GLGL + ++ V Sbjct: 747 RVE-ARREGRELRLTVTDRGRGIAPEVIDRVFDRFES--NTLGTKHRGVGLGLSIVRSFV 803 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810 + + G+ I S P GT + +FP+ Sbjct: 804 ELHGGRVEIHSAPGTGTRVTCLFPV 828 >gi|307152445|ref|YP_003887829.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306982673|gb|ADN14554.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1566 Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 76/217 (35%), Positives = 124/217 (57%), Gaps = 4/217 (1%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A++ AE+ + K +FLA +SHE+R+PL I+G++++++ Q F Y + + I+R+ Sbjct: 1183 AREQAEEANRIKDEFLAVLSHELRSPLNPILGWAKLLQTQNFNA---ETYQKGLSTIERN 1239 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 L ++ DLLDIS+I GK+NL PV+L + A+ V+L A K I I+ Sbjct: 1240 AALQAQLIEDLLDISRIMRGKLNLKIVPVNLIFIIESALETVRLAAEAKTINIQKDLDLT 1299 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 + ++L D ++QI N+LSNA+ FTP+GGQ+ + + NE VI V DTG G++ L Sbjct: 1300 VGKVLGDTARLQQIVWNLLSNAVKFTPTGGQVNVKLEGSGNEAVI-TVSDTGQGISANFL 1358 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 F Q + + G GLGL + + +V+ + G Sbjct: 1359 PYVFDYFRQADSKTTRKFGGLGLGLAIVRHLVELHGG 1395 >gi|83643679|ref|YP_432114.1| PAS/PAC domain-containing protein [Hahella chejuensis KCTC 2396] gi|83631722|gb|ABC27689.1| FOG: PAS/PAC domain [Hahella chejuensis KCTC 2396] Length = 1437 Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 134/250 (53%), Gaps = 10/250 (4%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+E ++ + +L AK +A+ S KS+FLA +SHEIRTP+ AI+G ++K Sbjct: 762 RDITEQREYEQRLREAKAMADNASKAKSEFLANMSHEIRTPMNAILGMVNLLKRTNL--- 818 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 R +Y + + S +L I+ND+LD SKIE+GK+ L EP SLD+ + + ++ Sbjct: 819 -EERQQDYVHKAESSARALLGILNDILDFSKIEAGKLTLDVEPCSLDKLLQDVGVIITAN 877 Query: 679 ANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736 +K + + IP L D ++QI +N+ NA+ FT G++ I+ S EE Sbjct: 878 LGDKPLEVLFDIDPKIPDWLELDGLRLQQILINLAGNAVKFTEQ-GEVEITVRLKSEEED 936 Query: 737 ---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + VRDTG+G++ +L++ + F Q S R G GLGL + + +V G+ Sbjct: 937 RLVLSFSVRDTGIGISAEQLQRIFEGFTQAEASTARRFGGAGLGLAICRRLVRLMGGEIA 996 Query: 794 IFSTPAKGTL 803 S +G++ Sbjct: 997 AESEEGEGSV 1006 >gi|108759669|ref|YP_629805.1| sensory box histidine kinase [Myxococcus xanthus DK 1622] gi|108463549|gb|ABF88734.1| sensory box histidine kinase [Myxococcus xanthus DK 1622] Length = 706 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 132/244 (54%), Gaps = 2/244 (0%) Query: 567 EKNKLSHAKKI-AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 E+N++ + I E+ S+ KS FLA +SHE RTPL AI+G++ ++ G L NP Sbjct: 458 EQNEMLRRQAIQVEQASAAKSQFLANMSHEFRTPLNAILGYTNMLLQGVSGEL-NPAQKR 516 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 ID +G +L+++N++LDI++IE+G+M L+ + E + E ++ + ++ Sbjct: 517 NLTRIDSNGRHLLEVINEILDITRIEAGRMPLNLSDFGIPELLQEVMAEMDPIIARSKLT 576 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + +P + +D + VKQI LN+LSNA+ FT G + + + + + V DTG Sbjct: 577 VSAHLGPRVPAVYSDRQKVKQIVLNLLSNALKFTHEGSVQVQAEYVAATSTLTISVTDTG 636 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ EK + F Q+ +S GTGLGL + + + G+ + ST +G+ Sbjct: 637 IGIDPANQEKIFEDFQQVDSSPTRAYGGTGLGLSICRRLATMLGGRVTLQSTQGEGSTFT 696 Query: 806 IIFP 809 + FP Sbjct: 697 LHFP 700 >gi|17228884|ref|NP_485432.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130736|dbj|BAB73346.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 811 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 82/244 (33%), Positives = 139/244 (56%), Gaps = 12/244 (4%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 E+ +L +K+ A+ + KS+FLA +SHE+RTPL I+G +++++ P +I Sbjct: 323 EQAQLKKSKEAADLANHAKSEFLANMSHELRTPLNGILGCAQILQRSSTLPEQEQHHI-- 380 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 N I++ G+ +L ++ND+LD++KIE+ K+ LH E V + + Q+ A +K IL Sbjct: 381 -NIIEQCGSHLLTLINDILDLAKIEAKKLELHGEDVHFPSFIQGIAEICQIRAAQKDILF 439 Query: 687 RTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE--VILRVR 742 A+N+P L D + ++Q+ LN+L NAI FT G ++ + T S+ + V R+R Sbjct: 440 VYEPASNLPIWLHIDAKRLRQVLLNLLGNAIKFTDHGQVKLKVETIEESSTQKPVKHRIR 499 Query: 743 ----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 DTG+G+T+ EL K PF Q+ ++ + EGTGLGL + + +V ++ S Sbjct: 500 YCIEDTGIGITDAELSKIFLPFEQVGEKKR-QTEGTGLGLAITRQLVQMMGSDIHVTSQV 558 Query: 799 AKGT 802 G+ Sbjct: 559 GHGS 562 >gi|239907102|ref|YP_002953843.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239796968|dbj|BAH75957.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 959 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 108/394 (27%), Positives = 189/394 (47%), Gaps = 36/394 (9%) Query: 442 INKRKMEIEVMQ-----LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RK 495 I RKM E ++ ++ A+ GIAI ++ G+IL N +S++FGY ++++ Sbjct: 441 ITARKMAEEALRESEERFKALHNASFGGIAIHDK-GVILECNLGLSEMFGYARDELIGMD 499 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI--TLGSTKEEKLLSLRIIIKKLPFSS- 552 + E++ VM H +R EK G K + +R+ + LP+ Sbjct: 500 GLFLVAERSRDVVMAH---------IRAGYEKPYEEYGRRKNGEEFPMRLEARNLPYKGK 550 Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 ++ DI++ + L AK+ AE + KS+FLA +SHE+RTPL ++G ++++ Sbjct: 551 MVRAVEFRDITDSVKAAQALLDAKEAAESATRAKSEFLANMSHEVRTPLNGVLGMLQLLQ 610 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAV 668 EY +S + ++ D+LDISKIE+GK+ + F L E++ Sbjct: 611 TTE----QTDEQKEYILGAIKSTKRLTRLLADILDISKIEAGKLQIIEAEFFTACLQESI 666 Query: 669 SEAISLVQLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGG---- 723 E + + A EK + A P ++ D V+QI N++ NA+ FT SG Sbjct: 667 ME---IFRPTAREKSLAFDFHVDAQMPPMLIGDETRVRQILFNLVGNALKFTESGSVQVD 723 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 +++ ++ V+ V DTG+G+++ +L+ +PF Q S +G GLGL + + Sbjct: 724 AMVLPAKNSGAVRVLFAVSDTGIGISDEQLKDIFEPFVQGERSYTRCYQGAGLGLAIVRK 783 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 +V G+ I +T GT + + P + PH Sbjct: 784 LVRILGGEMVIDNTAGNGTTVYVSLP-FKLPVPH 816 >gi|218442122|ref|YP_002380451.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218174850|gb|ACK73583.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 757 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 82/242 (33%), Positives = 128/242 (52%), Gaps = 13/242 (5%) Query: 577 IAEKESSH--KSDFLARVSHEIRTPLTAIIGFSEVI-----KNQRFGPLGNPRYIEYANY 629 IA +S+H KS+FL+ +SHE+ TPLT +IG + + + P +YIE Sbjct: 371 IAVAQSAHLSKSEFLSNISHELLTPLTCVIGLAGTLLHWSGEQSSLSPEKQKKYIE---S 427 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I +G ++D++ND+LD S + SG L SL S + Q A +K I + Sbjct: 428 IQANGKKLMDLINDILDYSSLTSGNYQLRIREFSLYSVASAVMGDFQEEAQKKSIELVLD 487 Query: 690 FANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 F I AD V+QI ++++NAI FTP GG++ + N +V ++ DTG+G Sbjct: 488 FQVKKEEIKFYADPDRVQQIISHLMNNAIKFTPEGGRVTLRIWREKN-QVFFQIEDTGIG 546 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 +T +L + F Q+ +S+Q GTGLGL L K +V+ + G + STP +G+L + Sbjct: 547 ITQDQLPLLFEKFQQLESSRQRTHGGTGLGLALTKQLVELHRGTIEVESTPHEGSLFTVR 606 Query: 808 FP 809 P Sbjct: 607 LP 608 >gi|298482642|ref|ZP_07000826.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298271105|gb|EFI12682.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 637 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 91/264 (34%), Positives = 136/264 (51%), Gaps = 16/264 (6%) Query: 549 PFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 PF L + HDI + Q +L AK+ AE KS FLA +SHEIRTPL AI+GFS Sbjct: 247 PFEGNRVLALIHDIGDRIQRSQELIEAKRRAEDADKMKSVFLANMSHEIRTPLNAIVGFS 306 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 E+I +EY I R+ NL+L ++ND+LD+S+IESGK +HF+ V + Sbjct: 307 EIIAVTE----SEEEKMEYLEIIQRNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGL 362 Query: 668 VSEA--ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 V E + +++ +N + +IR D V Q+ N LSNAI T G I Sbjct: 363 VEEVEKVHQLKMKSNVELKVIRPEGEYWTS---TDRNRVMQVLFNFLSNAIKNTEKGS-I 418 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + H + L V DTG G++ +L + F ++ + Q GTGLGL + K++V Sbjct: 419 TLGLKH-EGPWLKLYVSDTGCGISKEKLPQIFTRFEKLNDFVQ----GTGLGLSICKSIV 473 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + G+ + S +G++ + P Sbjct: 474 ERLGGRIEVTSELGQGSMFALYLP 497 >gi|291570453|dbj|BAI92725.1| two-component sensor histidine kinase [Arthrospira platensis NIES-39] Length = 497 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 82/264 (31%), Positives = 147/264 (55%), Gaps = 19/264 (7%) Query: 561 ISEWKQEKNKLSHA----KKIAEKESSH---KSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 +S+ K+++ +L++ KK+ E+ + KS+FLA +SHEIRTP+ A++GF++++++ Sbjct: 152 LSQEKEQRQELTYKNIRLKKMTEEAKAANRAKSEFLANMSHEIRTPMNAVLGFADLLQS- 210 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + +P+ Y I SG +L ++ND+LD+SKIE+GK+ LH+EPV++ ++E Sbjct: 211 ---TITDPQASSYIKAIASSGRTLLALINDILDLSKIEAGKLQLHYEPVNIRTIINEIEH 267 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-- 730 + + EK I ++ A IP I+ D ++QI NI+ N+I FT G I+++ Sbjct: 268 IFEQKTKEKNIKLQVYIAPEIPYSIIMDEVRLRQILFNIVGNSIKFTEFGSVKIMASCSQ 327 Query: 731 ----HTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 H N + + + DTG+G++ + +K F Q + GTGLGL + + +V Sbjct: 328 LKPNHPYNSINLKIAITDTGIGISPEDQQKIFDSFTQSEGQSNRKYGGTGLGLTITERLV 387 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 G ++ S +G+ FP Sbjct: 388 HLLGGSIHLESQINQGSTFTFDFP 411 >gi|323524713|ref|YP_004226866.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] gi|323381715|gb|ADX53806.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] Length = 1489 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 95/290 (32%), Positives = 149/290 (51%), Gaps = 13/290 (4%) Query: 524 TLEKITLGSTKEEKLLSLRIIIKK-LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 L + LG +E K ++ ++ S +S D S +L+ A+ +AE S Sbjct: 786 VLVEFRLGPEQEFKWTRAEVVPRREADGSVVWSGYWVDASVEHARAEELARARDVAEAAS 845 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 K DF A +SHEIRTP+ ++G EV++ PL N E I S +L I++ Sbjct: 846 RAKDDFFAMMSHEIRTPMNGVLGLVEVLERT---PL-NADQGEMLGMIHESAGALLQILD 901 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADL 701 DLLD SKIE+G++ + EP+ L E V A+ L+ A+EK + +R A+++ L D Sbjct: 902 DLLDYSKIEAGRLTIEAEPIDLRELVDNAVGLLAGRAHEKGLKVRVDIASDVAATLRGDS 961 Query: 702 RSVKQIALNILSNAIHFTPSGG-----QIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 ++Q+ N+L NAI FTP+G ++ T+ EVI V DTG+G+ K Sbjct: 962 VRLRQVLFNLLGNAIKFTPAGQVDVSVAVVAQTSELQTIEVI--VEDTGIGIAADVQAKL 1019 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 +PF Q +S R GTGLGL + + +++ G + S P +GT + + Sbjct: 1020 FEPFVQAESSTTRRFGGTGLGLTICRKLIELMNGSLALESEPGRGTRMTV 1069 >gi|262274200|ref|ZP_06052012.1| hypothetical protein VHA_001176 [Grimontia hollisae CIP 101886] gi|262222010|gb|EEY73323.1| hypothetical protein VHA_001176 [Grimontia hollisae CIP 101886] Length = 1343 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 134/247 (54%), Gaps = 8/247 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+++ K+ ++ L AK A + S K +FLA +SHEIRTP+ AI+G S + Sbjct: 571 DVTKQKRLESDLIAAKDQATEASKAKGEFLANMSHEIRTPMNAILGMSHLALLTDL---- 626 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N + Y I+++G +L I+ND+LD SKIE+GK+++ E + +++ + A Sbjct: 627 NDKQRNYVGNIEKAGKSLLGIINDILDFSKIEAGKLSVEHVDFRFSEVLDNISNIISVKA 686 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 EK + + N+P ++ D + QI +N+ N++ FT SG II + T E+I Sbjct: 687 KEKELELIFDIDPNLPDDLVGDPLRLGQIIINLTGNSVKFTESGEIIIRARKVTDVNEII 746 Query: 739 ---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + DTG+GM +L + + F Q S + GTGLGL ++K+ V+ G+ ++ Sbjct: 747 EIQFDIEDTGIGMNEEQLGRLFQSFSQADGSITRKYGGTGLGLTISKSFVELMGGRIWVE 806 Query: 796 STPAKGT 802 S P KG+ Sbjct: 807 SQPGKGS 813 >gi|115372454|ref|ZP_01459763.1| two-component system sensory histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|115370667|gb|EAU69593.1| two-component system sensory histidine kinase [Stigmatella aurantiaca DW4/3-1] Length = 498 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 88/307 (28%), Positives = 156/307 (50%), Gaps = 3/307 (0%) Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD-IS 562 TP M +++L+ D +T +TL + E R++ + SS +H + Sbjct: 188 GTPLPMEAVASKVLT-DQGETTSIVTLLHDRTETREKARLLEQLKTASSELEAKVHTATA 246 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ KL E+ S+ KS FLA +SHE RTPL AI+G++ ++ G + P Sbjct: 247 ELAEQNEKLRRQALQLEQASAAKSQFLANMSHEFRTPLNAILGYTNMLLQGVSGEM-MPT 305 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 ID +G +L ++N++LDI++IE+G+M L+ +L E + E ++ + Sbjct: 306 QKRNLQRIDSNGRHLLQVINEILDITRIEAGRMPLNLSDFALPELLQEVMAELDPIIART 365 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 ++++ + +P + +D + VKQI LN+LSNA+ FT G + + S V++ V+ Sbjct: 366 KLVVDAALPPRLPEVHSDRQKVKQIVLNLLSNALKFTHEGSIQVNAEYQPSLSLVLISVK 425 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ EK + F Q+ +S GTGLGL + + + G+ + S +G+ Sbjct: 426 DTGIGIAQEHQEKIFEDFQQVDSSPTRAYGGTGLGLSICRRLATMLGGRITVQSALGQGS 485 Query: 803 LIEIIFP 809 + P Sbjct: 486 TFTLHLP 492 >gi|310824380|ref|YP_003956738.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309397452|gb|ADO74911.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 683 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 81/250 (32%), Positives = 134/250 (53%), Gaps = 8/250 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI++ + + +L A+K AE+ + K+DFL+ +SHEIRTP+ AIIG S ++ Sbjct: 127 TLFDITDRRNYERELVLARKRAEEATRAKADFLSMMSHEIRTPMNAIIGLSNLLGQATLP 186 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL Y EYA + S +L ++N +LD +K+E+GK+ L L + + S + Sbjct: 187 PL----YQEYARILQSSSENLLVLLNSILDFNKMEAGKLMLEERRFDLRQLLHGLCSTLS 242 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 + A EK++ IR F +P +L D + Q+ N+L NAI FT G + + H Sbjct: 243 VKAEEKKLSIRVEFDPEVPNALLGDPVKLGQVLTNLLGNAIKFTEQGAVTLAVRRLHGDA 302 Query: 735 EEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 E V L +V DTG+G+ +L + + F Q + G+GLGL + + ++ + K Sbjct: 303 EGVFLGFKVSDTGMGIPQDQLTQIFEAFTQASYDITWKHGGSGLGLAICQKLLALHGSKM 362 Query: 793 YIFSTPAKGT 802 + S P +G+ Sbjct: 363 RVESVPGEGS 372 >gi|237805514|ref|ZP_04592218.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331026621|gb|EGI06676.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 405 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 87/254 (34%), Positives = 142/254 (55%), Gaps = 12/254 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DISE +Q +L AK+ A+ S KS FLA +SHEIRTP+ A+IG E+ +K G L Sbjct: 69 DISERRQLIEELQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHGEL 128 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + IE A S N +LD++ D+LDI++IESG++ L+ E +L + V + + Sbjct: 129 -DRSAIEVAY---SSANDLLDLIGDILDIARIESGRLALNPERANLRQLVESVVRVFDGL 184 Query: 679 ANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIIS-----TTHT 732 A +K + + + + I +L D KQI N++SNAI FT GQ+ IS T Sbjct: 185 ARQKDLSLVLALDSRINTDVLIDPLRFKQILSNLVSNAIKFTQD-GQVKISLQAGDTAAP 243 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + + V+D+G+G+++ + ++ +PF Q+ N+ Q+ G GLGL + +++ G Sbjct: 244 QQLHLHVMVQDSGIGISSEDQQRLFEPFAQVDNTGQMARTGAGLGLVICRSLCVMMGGNL 303 Query: 793 YIFSTPAKGTLIEI 806 + S P +GT + + Sbjct: 304 QLDSAPGQGTRVSM 317 >gi|71908619|ref|YP_286206.1| PAS [Dechloromonas aromatica RCB] gi|71848240|gb|AAZ47736.1| PAS protein [Dechloromonas aromatica RCB] Length = 1560 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 85/237 (35%), Positives = 129/237 (54%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L+HAK AE S K+ FLA +SHEIRTP+ AIIG + + + P N R + A+ Sbjct: 970 ELNHAKDEAESASRAKTAFLANMSHEIRTPMNAIIGLTHLAQRSTSDPEQNKRLGKVAD- 1028 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + + ++ I+ND+LDISKIE+ K+ L SL + + A LV A+ KR+ + Sbjct: 1029 ---AAHHLMSIINDVLDISKIEANKLKLENTDFSLAQLCTAACELVTQRADAKRLPVTCI 1085 Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTG 745 +P +L D ++QI LN LSNAI FT G I + S + +++R V DTG Sbjct: 1086 IDPALPPVLCGDPLRIQQILLNFLSNAIKFTERGKIDIRVQALQKSGDGILIRCAVSDTG 1145 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + K PF Q S R GTGLGL +++ + +A G+ + S +G+ Sbjct: 1146 IGIASDAQRKLFVPFEQGDASTTRRYGGTGLGLAISRRLAEAMHGEIGVDSKLGQGS 1202 >gi|85058486|ref|YP_454188.1| hybrid sensory histidine kinase BarA [Sodalis glossinidius str. 'morsitans'] gi|84779006|dbj|BAE73783.1| two-component regulatory protein [Sodalis glossinidius str. 'morsitans'] Length = 925 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 88/258 (34%), Positives = 138/258 (53%), Gaps = 16/258 (6%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ KS FLA +SHE+RTPL +IGF+ + +K PL +P +Y Sbjct: 279 ELDLAKKRAQEAVRIKSKFLANMSHELRTPLNGVIGFTRQTLKT----PL-SPTQRDYLQ 333 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RSGN +L I+ND+LD SK+E+GK+ L P +L + E + L+ A+EK + + Sbjct: 334 TIERSGNHLLSIINDVLDFSKLEAGKLMLETIPFALRAILDEVVILLAHTAHEKGLELIL 393 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRD 743 +P ++ D ++Q+ N++ NAI FT G III + +E E+ +++RD Sbjct: 394 QVQREVPEYVIGDPLRLQQVMTNLIGNAIKFTEQ-GHIIIRVSCQGHERERVEINVQIRD 452 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ + + + F Q S R GTGLGL + + +V G+ S +G+ Sbjct: 453 TGIGIPERQQSQLFQAFRQADASIARRHGGTGLGLVITQKLVHEMGGEITFRSRTGRGST 512 Query: 804 IEIIFPLYDTSH----PH 817 PL H PH Sbjct: 513 FWFHIPLQINCHAWVDPH 530 >gi|17230767|ref|NP_487315.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132370|dbj|BAB74974.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 889 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 98/345 (28%), Positives = 172/345 (49%), Gaps = 18/345 (5%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L +IL + +D +NR+ I N +K+ ED++ K + EQ T + + Sbjct: 379 RLSNILSSMTDAFIAVNRDWDITYCNHQAAKIQDLEPEDLIGKNY---WEQWTRTKGTDF 435 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 E R E I + +L + + + P + +I+E KQ + + Sbjct: 436 EREYR----RSLAENIPVHFEILYELWDMWLEVHAYPSEDGLGIFFRNITERKQAEQERE 491 Query: 573 H-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + A+ AE+ + K DFLA +SHE+RTPL I+G++ ++K + R IE Sbjct: 492 YLLMREQIARGEAERANRLKDDFLAVLSHELRTPLNPILGWATLLKKRNLEEATRRRGIE 551 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I+R+ L + ++ DLLD+S+I+ GK++L+ + V+L + EA+ V+L K I Sbjct: 552 T---IERNAKLQIQLIEDLLDVSRIQQGKLSLNIQSVNLVHTIEEALETVRLAIEAKSIH 608 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 I+T+ N+ + D ++QI N+L+NAI FTP GQI + +N I +++D G Sbjct: 609 IKTALGVNVGMVAGDAARLQQIIWNLLANAIKFTPPAGQIQVVLERVNNSAQI-QIQDNG 667 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 G+++ L + F Q + + G GLGL + K + + + G Sbjct: 668 KGISSEFLPYVFEYFRQADGTITRQFGGLGLGLAIVKHLTELHGG 712 >gi|163792880|ref|ZP_02186856.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159181526|gb|EDP66038.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 743 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 78/261 (29%), Positives = 142/261 (54%), Gaps = 10/261 (3%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ++ +K ++ AK+ AE + KS+FLA +SHEIRTP+ +IG + ++ + G L Sbjct: 217 LAVFKDAMAEVRDAKERAEAATRAKSEFLAMMSHEIRTPMNGVIGMTRLLLD---GDLA- 272 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 R E A + SG ++ I+ND+LD+SK+E+G++ L + V ++L+ A+ Sbjct: 273 ARDRETAGVVLESGEALMTILNDILDLSKLEAGRLELEVIDFDVRRLVEGTVTLMSGRAS 332 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 EK + ++ A+++P+ L D ++Q+ LN++ NA+ FT + G + + T + +++ Sbjct: 333 EKGLALQARVADDMPQYLRGDAGRLRQVVLNLVGNAVKFTDA-GSVTVRVTRSGSDQTTV 391 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++L V DTG+GM + + F Q S R GTGLGL ++K +VD G + Sbjct: 392 PLVLEVIDTGIGMDETARSRLFQEFAQADASIARRYGGTGLGLSISKRVVDRMGGAIEVD 451 Query: 796 STPAKGTLIEIIFPLYDTSHP 816 S +G+ + + + P Sbjct: 452 SASGRGSTFRVHLSIPEGVAP 472 >gi|229589257|ref|YP_002871376.1| putative two-component system sensor kinase [Pseudomonas fluorescens SBW25] gi|229361123|emb|CAY47986.1| putative two-component system, sensor kinase [Pseudomonas fluorescens SBW25] Length = 1215 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 90/271 (33%), Positives = 145/271 (53%), Gaps = 19/271 (7%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DISE +Q +++ AK+ A++ + KS FLA +SHEIRTP+ A+IG E+ +K G L Sbjct: 697 DISERRQLFDEIRAAKERADEANRAKSTFLATMSHEIRTPMNAVIGMLELTLKRADQGHL 756 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P IE A S +L+++ D+LDI++IESG+++L E V+L E + + + Sbjct: 757 DRP-AIEVAY---NSAKDLLELIGDILDIARIESGRLSLAPERVNLREVIESVVRVFDGL 812 Query: 679 ANEKRILIRTSFA--NNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-----IISTTH 731 A +K + + F + +L D KQ+ N++SNAI FT G Q+ ++ T Sbjct: 813 ARQKTLSLSLEFKPDRDDTEVLIDPLRFKQVLSNLVSNAIKFTERG-QVNIKVEVLPTDV 871 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 E+ L V DTG+G++ + + +PF Q NS Q+ G GLGL + +++ G+ Sbjct: 872 AQQVEMKLVVEDTGIGISRDDQLRLFEPFAQADNSGQLARSGAGLGLVICRSLCAMMGGQ 931 Query: 792 FYIFSTPAKGTLIEI------IFPLYDTSHP 816 + S P GT + + + PL T P Sbjct: 932 LSLSSVPMVGTQVHVNLKMARLQPLQTTHEP 962 >gi|85705421|ref|ZP_01036519.1| two-component hybrid sensor and regulator [Roseovarius sp. 217] gi|85669846|gb|EAQ24709.1| two-component hybrid sensor and regulator [Roseovarius sp. 217] Length = 441 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 110/408 (26%), Positives = 191/408 (46%), Gaps = 38/408 (9%) Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462 I W+R + L +P Q E N D++ R++E + L S Sbjct: 66 IAWSRVSVLKQGSLP-----QVIETFDVNADVVRDLEATF--RRIEPAIAGLVS------ 112 Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522 D ++I R S + +L GY D+ + F V L Q +VM T +LSL Sbjct: 113 DSLSIEQRRA---SVEEILRQLDGY---DLSIRDFLVELAQAKSAVMADVRTGLLSLS-- 164 Query: 523 QTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 I LG+T + I++ F + + D+S KQ +NK+ A Sbjct: 165 ---HAIAYLGAT-------VLILLAIFVF-----ILLLDLSAAKQAENKMRKLADEASSA 209 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + K++F++ +SHE+RTPLT+I+G ++K + L + I+ + R+G+ +L+++ Sbjct: 210 ARMKTNFMSVISHELRTPLTSILGGLALLKFKLNNTLVDETTIKLLDVASRNGDRLLELI 269 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 N++LD + ++ + +PV L+E + A+ + YAN + R + A +L D Sbjct: 270 NNILDAQALSESRVTVVQKPVDLNEVAASAVEDCEAYANRFGVTYRLTTATETVEVLTDR 329 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 V QI +N++SNA FTPSGG + I + + V D G+G+ ++ PF Sbjct: 330 GRVSQILINLISNAAKFTPSGGSVDIRVLKVGKQARV-EVIDEGIGIPHHLQGSIFSPFY 388 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q+ + +GLGL ++K ++D G+ ST +G++ I P Sbjct: 389 QVNPGTTGATKSSGLGLSISKQLIDLLDGEIGFNSTQGQGSIFWIELP 436 >gi|86606313|ref|YP_475076.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-3-3Ab] gi|86554855|gb|ABC99813.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-3-3Ab] Length = 1459 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 105/376 (27%), Positives = 182/376 (48%), Gaps = 23/376 (6%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE- 502 ++ E E+ Q S+ D + I + +G NRA GY ++++ +PF ++ Sbjct: 690 RKSAEAELEQFFSV---ALDLLCIADAQGYFRRLNRAWETTLGYSLQELQSRPFLEWVHP 746 Query: 503 QNTPSVMN--HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 ++ P+ L E LD + GS + + R L S Y+ D Sbjct: 747 EDVPATQAAMQQLVEEKRLDHFVNRYRTQDGSYR---FIEWR---ASLAGSLVYA-AGRD 799 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+ KQ + ++ A + AE + KS+FLA +SHEIRTP+ AI+G + ++ + + Sbjct: 800 ITLAKQAQEQMKAAMEAAEAANRAKSEFLATISHEIRTPINAIMGMAGLLLDTSL----D 855 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + ++ I ++L ++ND+LD SKIES K+ L P SL + + E + L+ A Sbjct: 856 AQQRDWVQTIRYGSEVLLSLINDILDFSKIESQKLELEETPFSLPQLMEELLDLMAAQAQ 915 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 K + + +P L D ++QI N+LSNAI FTP G ++ + + Sbjct: 916 SKDLELVAWVDPALPATLVGDPNRLRQILANLLSNAIKFTPQGEVVVTVEAQEQDPQAQV 975 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V +V+DTG+G+ + ++ KPF Q+ +S + GTGLGL +++ + G ++ Sbjct: 976 QWVSFQVQDTGIGIPPEKQDRLFKPFSQVDSSISRQYGGTGLGLAISQRLCQLMGGTIWV 1035 Query: 795 FSTPAKGTLIEIIFPL 810 S P +G+ PL Sbjct: 1036 QSQPGQGSTFGFRIPL 1051 >gi|91773227|ref|YP_565919.1| multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91712242|gb|ABE52169.1| Multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 607 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 106/416 (25%), Positives = 199/416 (47%), Gaps = 52/416 (12%) Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL-STNRAVSKLFGYPVED 491 I P+ +D INK +I + LC E G+ ++ ++G + +TN K E+ Sbjct: 206 IAPDGIDVAINKALEKIGL--LC---ECDRVGMFMLCQDGFVADNTNEWCGKGVLCHKEE 260 Query: 492 ILRKPFTVFLEQNTPSVMNH-------YLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 + + P ++ P +M ++T++ L + + EK +S I Sbjct: 261 LQKIPVSII-----PWIMEQLSKGQVVFVTDVGKLPSQASKEKDLFMKKGIRSFISFPIY 315 Query: 545 I--KKLPFSSCYSLTMHDISEWKQ-----------------EKN-----------KLSHA 574 I K F Y+++ D EW + E+N +L+ A Sbjct: 316 IDSKFAGFICLYNVS--DCEEWDENELTTMQMIMGIIGMAIERNLNEESLKTYAYQLAEA 373 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 E K +FLA +SHE+RTPL I GF ++ +RFG L + R + + + R+ Sbjct: 374 NYQLESLDRMKDEFLANLSHELRTPLNVIKGFGGLMSEERFGKL-DERQRKAMDAVMRNT 432 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +++++V LL I+ +++ + F ++++ ++ AISLV +KR++++ ++ Sbjct: 433 TILIELVESLLYITSVQADMIKYSFAQINVESSLERAISLVASNIEKKRLMLKIDVKKDL 492 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 P I D ++++ +++L NAI FTP+ G + + T + + + ++DTGVG+ + ++ Sbjct: 493 PYIRGDKVYLEKVFVHLLGNAIKFTPASGTVSVFMDRT-RDSLHIAIKDTGVGVASDQIP 551 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F Q+ S + G G+GL + K +VDA+ GK ++ S GT I II P+ Sbjct: 552 YMFHKFRQLDGSLTRKYGGVGIGLYICKHIVDAHKGKIWMESEEGTGTDIHIILPI 607 >gi|91974689|ref|YP_567348.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB5] gi|91681145|gb|ABE37447.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB5] Length = 837 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 81/266 (30%), Positives = 134/266 (50%), Gaps = 5/266 (1%) Query: 546 KKLPF-SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 K +P LT DIS+ + + L + E K DF+ VS+E+R+PLT II Sbjct: 566 KTMPLPDGATMLTFLDISDTENVERALRERNEALETADRIKVDFVHHVSYELRSPLTTII 625 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 GF+ ++ + GPL N + EY YI S N ++ I+N++LD++ I++G M L+ P+ + Sbjct: 626 GFAHLLGDPSTGPL-NDKQSEYIAYITSSTNALMAIINNILDLASIDAGAMTLNLGPIDI 684 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 A+ A +Q +I + + + D R V Q+ N+L+NA+ F+P+ Sbjct: 685 GRAIDAAAEGIQDRLARDQITLDVEIDPAVGEFVGDERRVVQVLYNLLANAVGFSPNQAT 744 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + + H +V+ V D G G+ +K F +SQ R G GLGL L ++ Sbjct: 745 VTL-VVHKIGAKVVFTVTDAGPGIAPELKDKVFDWFES--HSQGSRHRGPGLGLALVRSF 801 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810 V+ + GK + S +GT + FP+ Sbjct: 802 VELHGGKVQVDSVVGRGTSVICEFPI 827 >gi|186687036|ref|YP_001870425.1| putative PAS/PAC sensor protein [Nostoc punctiforme PCC 73102] gi|186469660|gb|ACC85457.1| putative PAS/PAC sensor protein [Nostoc punctiforme PCC 73102] Length = 1297 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 84/268 (31%), Positives = 141/268 (52%), Gaps = 12/268 (4%) Query: 557 TMHDISEWKQ---EKNKL----SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 T+ +I+E K+ E+ +L A+ A++ + K +FLA +SHE+R+PL I+G+ + Sbjct: 893 TVLNITEQKRIEAEREQLLVREQAARAEADRANRIKDEFLAVLSHELRSPLNPILGWIRL 952 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 ++N G L PR E I+R+ L ++ DLLDIS+I GK+ L P+SL +S Sbjct: 953 LQN---GKLDLPRQTEALKTIERNAKLQSQLIEDLLDISRIMQGKLTLTAAPISLTFVIS 1009 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 AI V+L A K I I + + + D ++Q+ N+L+NA+ FTP GGQ+I+ Sbjct: 1010 AAIETVRLAAEAKNIQILLDLSTTVSYVSGDANRLQQVVWNLLTNAVKFTPRGGQVIVEL 1069 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 ++ +RV DTG G+ L + F Q ++ + G GLGL + + +V+ + Sbjct: 1070 KQL-DQLAQIRVSDTGKGIDPQFLPYVFEYFRQADSTTTRKFGGLGLGLAIVRQIVEMHG 1128 Query: 790 GKFYIFSTPA-KGTLIEIIFPLYDTSHP 816 G S +G + + P+ + P Sbjct: 1129 GTVKAESLGEDRGAIFTVQLPVIQQTIP 1156 >gi|172039492|ref|YP_001805993.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171700946|gb|ACB53927.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 1195 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 83/263 (31%), Positives = 139/263 (52%), Gaps = 14/263 (5%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI+E K + L AK+IAE ++ KS+FLA +SHEIRTP+ AI+GF +++ + Sbjct: 687 TITDITEKKVAQEALKKAKEIAEVANNAKSEFLANMSHEIRTPMNAILGFCDLLDKR--- 743 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + R Y + G ++L ++ND+LD+SKIESGK+ + EP+ L + E + Sbjct: 744 -ITDERSRHYLESVASGGKMLLSLINDILDLSKIESGKIEIIHEPIDLRGLIFEIKQMFV 802 Query: 677 LYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSG-------GQIIIS 728 A EK I + + N +P ++ D ++QI N++ NA+ FT G Q++ S Sbjct: 803 ETAKEKNIELLVNINNQVPDVIVFDEVRLRQILFNLVGNALKFTEKGYVKISVKSQLLPS 862 Query: 729 TT--HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 H S + + + DTG+G+ + ++ F Q + GTGLGL + + + Sbjct: 863 DKNHHPSYCSLEISIEDTGIGIALDQRKRVFDVFTQSEGQSNRKYGGTGLGLTITNRLTE 922 Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809 G + S KG++ + FP Sbjct: 923 MLKGIIDLESELGKGSIFTVSFP 945 >gi|319781457|ref|YP_004140933.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167345|gb|ADV10883.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 763 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 141/259 (54%), Gaps = 9/259 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ K+ ++ L A++ AE S KS FLA VSHEIRTP+ I+G + ++ + Sbjct: 229 RDITARKRAESSLITARERAEYASQAKSRFLATVSHEIRTPMNGIMGMARLLADTSL--- 285 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 +P Y + S + +L ++ DLLD SKIE+G+ + +P+S+ E I L+ Sbjct: 286 -SPEQQTYVGAVSTSASALLALIEDLLDYSKIEAGRFDPEPQPMSVREIADNIIELLAAR 344 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHT-SNE 735 A K I + ++P+++ AD V+Q+ LN++ NAI FT SGG ++ I+ T +++ Sbjct: 345 AFAKDIGLGCHVEPDVPQLITADPGKVRQVLLNLIGNAIKFTDSGGVLVSIARARTETSD 404 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + + DTG G+ + +LE+ + F Q + G GLGL +++ +V A G + Sbjct: 405 RICFTIADTGPGLHDADLERIFEEFEQADGTSTRTHGGAGLGLAISRRLVAAMGGTISVS 464 Query: 796 STPAKGTLIEIIFPLYDTS 814 S +G+ E +F + T+ Sbjct: 465 SRLGQGS--EFVFEVPATA 481 >gi|300088283|ref|YP_003758805.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528016|gb|ADJ26484.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 581 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 95/367 (25%), Positives = 180/367 (49%), Gaps = 37/367 (10%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E +L ++L DG+ + ++EGII + NR SKLFG+ +++ K V Sbjct: 245 EKAKLSTVLNNMVDGVILTDKEGIISTANRTASKLFGFEDKNVSGKSII-------EVVR 297 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPF----SSCYSLTMHDISEW 564 H + +L L+ + E+ S + E ++ R I + P S L D++E Sbjct: 298 EHEVDAVLVRCLQTSKEQ----SAQFESAVTKRFIRVIAAPVIDGKPSEILLLFQDLTEL 353 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + + + + + + +SHE+RTP+T I E + + G + + Sbjct: 354 RNLQ--------------TMRKELVGNISHELRTPITGIKAMVETLHD---GAIDDKEAA 396 Query: 625 -EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 ++ I+ + + V++L ++S+IE+GK L EP+ L+ V + I +Q A ++ Sbjct: 397 KDFLTRIESEVDRLAQTVSELTELSRIETGKAELRLEPLDLNVLVKDVIEQLQPLAERQQ 456 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + + + A ++P +LAD ++Q +N++ NA+ F GG + + T T+N EVI+ + D Sbjct: 457 VTVSATLAKDLPEVLADRDRIRQTIINLVHNAVKFNRVGGNVKLY-TKTNNNEVIVDISD 515 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G++ +L + F + ++ G+GLGL +AK + A+ GK ++ S G+ Sbjct: 516 TGIGISKDDLPHVFERFYKADRARS--KSGSGLGLAIAKHTIQAHNGKIWVASEQGNGST 573 Query: 804 IEIIFPL 810 PL Sbjct: 574 FSFSLPL 580 >gi|209523505|ref|ZP_03272059.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209495910|gb|EDZ96211.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1391 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 83/281 (29%), Positives = 150/281 (53%), Gaps = 16/281 (5%) Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQE---KN-KLSHAKKIAEKESSHKSDFLARVSHEI 596 L + ++L + ++ + E +QE KN KL + A+ + KS+FLA +SHEI Sbjct: 864 LEAVARQLGIAIAHAQLLSQEKEQRQELTYKNIKLKKMTQEAKAANRAKSEFLANMSHEI 923 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTP+ A++GF++++++ + +P+ Y I SG +L ++ND+LD+SKIE+GK+ Sbjct: 924 RTPMNAVLGFTDLLQS----TITDPKATSYIKAIASSGRTLLALINDILDLSKIEAGKLQ 979 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNA 715 LH+EPV++ ++E + + A+EK + + +P I+ D ++QI NI+ N+ Sbjct: 980 LHYEPVNIRTVINEIEHIFEQKASEKNLNLEVEVDPKLPYSIMTDEVRLRQILFNIVGNS 1039 Query: 716 IHFTPSGGQIIISTT------HTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 I FT G I ++ H N ++ + + DTG+G++ + K F Q Sbjct: 1040 IKFTEFGSVRITASCSQLKPNHPYNSIDLKIAITDTGIGISREDQHKIFDSFTQSEGQSN 1099 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + GTGLGL + + +V G ++ S +G+ + P Sbjct: 1100 RKYGGTGLGLTITERLVHLLGGSIHLESERDQGSTFTVDLP 1140 >gi|124007584|ref|ZP_01692289.1| sensory box histidine kinase/response regulator [Microscilla marina ATCC 23134] gi|123987067|gb|EAY26823.1| sensory box histidine kinase/response regulator [Microscilla marina ATCC 23134] Length = 1075 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 89/249 (35%), Positives = 132/249 (53%), Gaps = 10/249 (4%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D+S K+ + L A+K AE+ S K FLA +SHEIRTPL AIIG ++ Sbjct: 548 RDVSNKKKAQKVLIQARKKAEESSLAKERFLANMSHEIRTPLNAIIGMQRLLSKTSL--- 604 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 R Y + I S + +L I+ND+LDISKIE+GK+ L L + + + + Sbjct: 605 -EERQQRYLDAIGTSADNLLVIINDILDISKIEAGKLELENVGFDLCKLIRHLVFTLGYK 663 Query: 679 ANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----HTS 733 A EK I + + +N+ P +L D + QI LN+L+NAI FT G++IIST+ + Sbjct: 664 AEEKGIGLYANIDDNMHPIVLGDSVRLHQILLNLLNNAIKFTDV-GKVIISTSLVEANPD 722 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + V V DTG G+ +E + F Q S + G+GLGL + + +V+ GK Sbjct: 723 TQTVCFEVSDTGRGIKAENIEAVFESFTQEDASITRKFGGSGLGLAIGRQLVELFGGKLT 782 Query: 794 IFSTPAKGT 802 + S +KGT Sbjct: 783 VTSEYSKGT 791 >gi|253996594|ref|YP_003048658.1| multi-sensor signal transduction histidine kinase [Methylotenera mobilis JLW8] gi|253983273|gb|ACT48131.1| multi-sensor signal transduction histidine kinase [Methylotenera mobilis JLW8] Length = 845 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 78/242 (32%), Positives = 132/242 (54%), Gaps = 10/242 (4%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE KS FLA +SHE+RTPL +IIGF+ +I GPL N + + + S + Sbjct: 599 AEAADKIKSAFLATMSHELRTPLNSIIGFTGIILQGLAGPLNNEQTKQLG-MVRGSARHL 657 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L+++ND+LDISKIE+G++ ++ E +L + ++ + +K +++ TS + + I Sbjct: 658 LELINDVLDISKIEAGQLEVNSETFNLVALIERVVNSLTPMIEKKGLVLHTSISKELGEI 717 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIII---------STTHTSNEEVILRVRDTGVGM 748 ++D R ++QI +N+++NA FT G I S T + L V DTG+G+ Sbjct: 718 VSDRRRLEQILINLVNNAAKFTEKGSITITAEIVNDLKDSLDTTPTRFLKLSVIDTGIGI 777 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L+ KPF QI + EGTGLGL + + +++ G+ Y S + G+ ++ Sbjct: 778 KPDDLDLLFKPFHQIDSGLSRLHEGTGLGLAICRRLLELMGGQIYAVSEWSTGSKFTVLL 837 Query: 809 PL 810 P+ Sbjct: 838 PM 839 >gi|311746666|ref|ZP_07720451.1| PAS/PAC domain-containing protein [Algoriphagus sp. PR1] gi|126578338|gb|EAZ82502.1| PAS/PAC domain-containing protein [Algoriphagus sp. PR1] Length = 1436 Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 108/372 (29%), Positives = 186/372 (50%), Gaps = 19/372 (5%) Query: 444 KRKMEIEVM----QLCSILEATSDGIAIINREGIILS-TNRAVSKLFGYPVEDILRKPFT 498 KR +EI+++ +L + +E T +A+++++ ++ +NR + E I + F Sbjct: 657 KRNIEIDLVNEKSRLSAFVEHTPAAVAMLDKDMCYIAVSNRWEEEYEYKSEEVIGKSHFD 716 Query: 499 VFLE-QNTPSVMNHYLTEILSLD-LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 +F E N N+Y ++L D L EKI E + +S + L + Sbjct: 717 LFSELMNEERRANYY--QVLQGDFLINNEEKIFFPGEIEPRFISWEMRPWYLYNGEIGGI 774 Query: 557 TM--HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 + +I+ ++ +L AK+ AE+ S KS+FLA +SHEIRTPL +IGF++++ + Sbjct: 775 MVFTQNITALVAQREELKEAKESAEEASKAKSEFLANMSHEIRTPLNGVIGFTDLVLKTK 834 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 N +Y + + +S N +L I+ND+LD SKIE+GK+ L + L E S+A + Sbjct: 835 L----NETQHQYLSIVHQSANQLLSIINDILDFSKIEAGKLELDIDKCDLYEMASQATDI 890 Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHT 732 + K + + + N+PR I AD +KQ+ +N+L N+ FT G ++ I + Sbjct: 891 ITYQIQNKGLEMLLNIGTNLPRFIYADSVRLKQVLVNLLGNSSKFTEKGEIELKIENLES 950 Query: 733 SNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 R VRDTG+G+ + K + F Q +S + GTGLGL + ++ Sbjct: 951 EGNSNTFRFSVRDTGIGIKPEKQSKIFEAFSQEDSSTTKKYGGTGLGLTITNKLLGLMDS 1010 Query: 791 KFYIFSTPAKGT 802 K + S KG+ Sbjct: 1011 KLQLKSEVGKGS 1022 >gi|289164577|ref|YP_003454715.1| Legionella transmission sensor LetS [Legionella longbeachae NSW150] gi|288857750|emb|CBJ11594.1| Legionella transmission sensor LetS [Legionella longbeachae NSW150] Length = 910 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 136/246 (55%), Gaps = 9/246 (3%) Query: 563 EWKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E +EKN +LS KK E++S KS+F+A +SHEIRTP+ +IGF+ V+ + PL Sbjct: 274 ELLEEKNIELSLEKKKIEEKSRQKSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL--- 330 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 ++Y I S +L I+ND+LD SKI++GK++L P+++ + E ++L A++ Sbjct: 331 -QLDYVKTIKSSAQDLLGIINDILDFSKIDAGKLHLDCIPLNIRHCIDEVLALAAPNAHK 389 Query: 682 KRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---V 737 K I + N+P+I L D VKQ N+++NA+ FT G +I + E+ + Sbjct: 390 KGIDLIPITELNVPKIVLGDPFRVKQFISNLVTNAVKFTDHGYVLIRTNVEQETEKDYTL 449 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + + DTG+G++ + K F Q S R G+GLGL + K + + G+ S Sbjct: 450 CITITDTGLGISPEDQSKLFTAFNQADTSITRRYGGSGLGLVICKKLCEEMKGRITFASE 509 Query: 798 PAKGTL 803 KG++ Sbjct: 510 LNKGSV 515 >gi|258514365|ref|YP_003190587.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257778070|gb|ACV61964.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 458 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 102/370 (27%), Positives = 187/370 (50%), Gaps = 39/370 (10%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGY--PVEDILRKPFTVFLEQNTPSVMNHYL 513 +IL++ +DG+ ++REG +L N AV +F P + + +N ++ +Y Sbjct: 118 AILDSMADGVIALDREGKVLLVNPAVEDIFAIENPADQV----------KNILGIIRNY- 166 Query: 514 TEILSLDLRQTLEKITLGSTK--EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 LE++ + K E + L+I+ + P LT S+ K E + Sbjct: 167 ----------ELEQLLFHALKRNEPMVKVLKILTSEEPRVFRVHLTPLRSSDTKTE-GIV 215 Query: 572 SHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP----RYIE 625 + + I ++ +++F+A VSHE+RTPLT+I GF E + + G L P R++E Sbjct: 216 AVLRDITDRRKLEQMRTEFVANVSHELRTPLTSISGFLETLLD---GALEEPEIARRFLE 272 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + + D + L ++NDLL++S IE + +F+PV + E + + + A EK + Sbjct: 273 HMS--DETERLT-RLINDLLNLSNIEDRQFVPNFQPVDMAELIHRVAPVYEPRAREKGLT 329 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + + + N+P ++ D + Q+ N++ NAI +TP+ G+I I S +E+ + V DTG Sbjct: 330 LMVTLSPNLPPVIGDEDLLMQVLTNLIDNAIKYTPAKGKIEIK-ARASEQEMKVIVTDTG 388 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ L + + F ++ ++ GTGLGL + K +V+ + G + ST KG++ Sbjct: 389 IGIPTESLARIFERFYRVDKARSREMGGTGLGLSIVKHIVERHGGSLEVTSTVGKGSIFA 448 Query: 806 IIFPLYDTSH 815 I P+ H Sbjct: 449 FILPVAGDLH 458 >gi|124004919|ref|ZP_01689762.1| signal transduction histidine kinase [Microscilla marina ATCC 23134] gi|123989597|gb|EAY29143.1| signal transduction histidine kinase [Microscilla marina ATCC 23134] Length = 1367 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 89/255 (34%), Positives = 135/255 (52%), Gaps = 10/255 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 HDI++ K + ++ AK+IAEK K FLA +SHEIRTP+ IIG +++ + PL Sbjct: 827 HDITQKKLVEQEVIRAKEIAEKSLKVKERFLANMSHEIRTPMNGIIGMIDLMMDT---PL 883 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N + EY I +S +L+I+ND+LD+SK+E+GKM LH +P+ + V + +L Sbjct: 884 ENKQQ-EYMYTIKKSSETLLNILNDILDLSKLEAGKMALHPKPMDIRFMVEKVYTLFLQQ 942 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736 A K + IP L AD + QI N++SNAI FT GQ+ I T S E Sbjct: 943 AKAKNNFLSYQVDPKIPYFLEADETRLIQIISNLMSNAIKFTED-GQVAIKFTLASKGEL 1001 Query: 737 ---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +++ V D+G+G++ + + F Q+ NS GTGLGL ++K + G Sbjct: 1002 SVHLLVEVADSGLGISPEDQNRLFSTFTQLDNSSSKSYSGTGLGLAISKELCRLMNGDIG 1061 Query: 794 IFSTPAKGTLIEIIF 808 + S G+ F Sbjct: 1062 VISEIGHGSTFWFTF 1076 >gi|295097349|emb|CBK86439.1| Hpt sensor hybrid histidine kinase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 919 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + NP ++ + Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSEL----NPTQRDHLHT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + + ++L+ +++K + + + Sbjct: 334 IERSANNLLTIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 N++P ++ D ++Q+ N++ NAI FT SG I++ SN +V + V RDTG Sbjct: 394 IKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNNKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V G S P +G+ Sbjct: 454 IGIPERDQTRLFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGS 510 >gi|283786671|ref|YP_003366536.1| two-component sensor kinase/response regulator [Citrobacter rodentium ICC168] gi|282950125|emb|CBG89761.1| two-component sensor kinase/response regulator [Citrobacter rodentium ICC168] Length = 918 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 134/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + N ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTEL----NTTQRDHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P +L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFALRNTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 N++P ++ D ++Q+ N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKNDVPDNVIGDPLRLQQVITNLVGNAIKFTENGNIDILVEKRSISNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|226324990|ref|ZP_03800508.1| hypothetical protein COPCOM_02782 [Coprococcus comes ATCC 27758] gi|225206338|gb|EEG88692.1| hypothetical protein COPCOM_02782 [Coprococcus comes ATCC 27758] Length = 592 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 90/270 (33%), Positives = 144/270 (53%), Gaps = 26/270 (9%) Query: 561 ISEWKQEKNKLSHAKKIA-----EKESSHKSD--------FLARVSHEIRTPLTAIIGFS 607 + E +Q++ + H K+++ EKES+ K+ FLA +SH+IRTP+ AIIGFS Sbjct: 182 MVEHQQDQMEFEHRKRLSKALELEKESTRKAKVAGEVKNAFLANMSHDIRTPMNAIIGFS 241 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 ++I P + I SG ++L I+ND+LD+SKIESGK + E V+ + Sbjct: 242 DIIAEH---PDDEEIVKNAISKIQASGEILLKIINDVLDLSKIESGKAEI-VEMVTDLKQ 297 Query: 668 VSEAISLVQLYANEKRIL---IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 + E + ++ Y+ +K ++ + N P + D ++Q+ +N+L+NA+ FT +GG Sbjct: 298 MEENLKMMLEYSIQKGMIDFKVEDQIEN--PLVWCDATKLQQVLVNVLNNAVKFTQAGGT 355 Query: 725 IIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 I S E ++DTG+GMT + A + F + S + + EGTGLGL + Sbjct: 356 ITFSCVQRMIAPGFAEYKFTIKDTGIGMTEEFQKHAFEAFERERTSTESKTEGTGLGLAI 415 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 K +VD G I S +GT I+I PL Sbjct: 416 VKKLVDLMHGDVIIQSNSGQGTKIQISLPL 445 >gi|237803884|ref|ZP_04591469.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025864|gb|EGI05920.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 402 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 87/254 (34%), Positives = 142/254 (55%), Gaps = 12/254 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DISE +Q +L AK+ A+ S KS FLA +SHEIRTP+ A+IG E+ +K G L Sbjct: 66 DISERRQLIEELQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHGEL 125 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + IE A S N +LD++ D+LDI++IESG++ L+ E +L + V + + Sbjct: 126 -DRSAIEVAY---SSANDLLDLIGDILDIARIESGRLALNPERANLRQLVESVVRVFDGL 181 Query: 679 ANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIIS-----TTHT 732 A +K + + + + I +L D KQI N++SNAI FT GQ+ IS T Sbjct: 182 ARQKDLSLVLALDSRINTDVLIDPLRFKQILSNLVSNAIKFTQD-GQVKISLQAGDTAAP 240 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + + V+D+G+G+++ + ++ +PF Q+ N+ Q+ G GLGL + +++ G Sbjct: 241 QQLHLHVMVQDSGIGISSEDQQRLFEPFAQVDNTGQMARTGAGLGLVICRSLCVMMGGNL 300 Query: 793 YIFSTPAKGTLIEI 806 + S P +GT + + Sbjct: 301 QLDSAPGQGTRVSM 314 >gi|37913120|gb|AAR05382.1| probable two-component sensor [Aeromonas hydrophila] Length = 1252 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 137/250 (54%), Gaps = 8/250 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+SE ++ ++L+ A + A++ + KS FLA +SHEIRTP+ AIIG E+ R G L Sbjct: 681 DVSERQRLLDELALASQDAQEANRAKSTFLATMSHEIRTPMNAIIGLLEL--TLRRGRL- 737 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + S N +L ++ D+LDISKIESG++ L EP + +++ A Sbjct: 738 HEEDKSSLTIAHGSANDLLSLIGDILDISKIESGRLELMPEPHDIVALTGAVVTVFNALA 797 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--E 736 +K + + F + PR + D KQI N++SNAI +T G + + TS+ Sbjct: 798 RQKNL--QLEFVADDPRWVQIDGLCYKQILSNLVSNAIKYTEQGSVQVELQSKTSDGWCT 855 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + L +RDTG+G+ E + +PFGQ + I+ GTGLGL +A+++ ++ G + S Sbjct: 856 LYLVIRDTGIGIAPAEQARLFQPFGQASQPEHIQRSGTGLGLMIARSLCESMGGSLQLES 915 Query: 797 TPAKGTLIEI 806 P +GT I I Sbjct: 916 EPGRGTCISI 925 >gi|84385756|ref|ZP_00988786.1| putative sensor histidine kinase [Vibrio splendidus 12B01] gi|84379072|gb|EAP95925.1| putative sensor histidine kinase [Vibrio splendidus 12B01] Length = 819 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 132/252 (52%), Gaps = 9/252 (3%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 SE +++ +L + AE KS+FL+ +SHEIRTP+ ++G S++I +Q P Sbjct: 277 SEMREKNQELVEERTKAEAAVKAKSEFLSTMSHEIRTPMNGVLGISQIIASQT----QEP 332 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 E + I SG+ ++ I+ND+LD SK+E K+ L F P + + + S ++ A+E Sbjct: 333 ETKENIDLILDSGHHLMTILNDILDFSKVEENKLELDFAPFNFVQVIQPVRSALKPLADE 392 Query: 682 KRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K I R NNIP +++ D ++QI N+ NA FT G I + + N ++I Sbjct: 393 KGI--RLLIENNIPTSIQLIGDCARLRQIMFNLGGNATKFTKEGHVSIQADLNRPNNQLI 450 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 L V DTG+G+ + E+ F Q S + GTGLGL + K +V G+ + S Sbjct: 451 LTVTDTGIGIPKGKHEQIFNSFEQADTSTTRKFGGTGLGLAIVKNLVSLMNGEITLTSAV 510 Query: 799 AKGTLIEIIFPL 810 GT ++ P+ Sbjct: 511 GLGTKFQVSLPI 522 >gi|212692221|ref|ZP_03300349.1| hypothetical protein BACDOR_01717 [Bacteroides dorei DSM 17855] gi|212665098|gb|EEB25670.1| hypothetical protein BACDOR_01717 [Bacteroides dorei DSM 17855] Length = 1408 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 131/251 (52%), Gaps = 10/251 (3%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 ++K +L K ++ + K F ++HE RTPLT I+G E + NP+ IE Sbjct: 875 KQKGQLIQMSKKVQELTVDKLAFFTNITHEFRTPLTLIVGPIERALKLSY----NPQVIE 930 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 ++++R+ +L +VN L+D K+ESGKM + P + + ++E + YA+E+ I Sbjct: 931 QLHFVERNSKYLLSLVNQLMDFRKVESGKMEIVRNPGNFAKLLNELLVPFDAYASERGIT 990 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVR 742 I F I+ D ++ ++ +N++ NA+ FTP GGQI I T EE + + +R Sbjct: 991 IERRFRLPSCEIMYDEDAMHKVIVNLIGNALKFTPKGGQITIYATPLRQEEQEKLFICIR 1050 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQ--IRGE-GTGLGLPLAKAMVDANMGKFYIFSTPA 799 DTG G+ E++K F Q N I G+ GTG+GL L K +V + G + + Sbjct: 1051 DTGPGLPEEEIDKVFNRFYQSQNKTHSSINGQSGTGIGLYLCKRIVQLHGGSICAKNNQS 1110 Query: 800 KGTLIEIIFPL 810 KG I+ PL Sbjct: 1111 KGCSFRILLPL 1121 >gi|114566853|ref|YP_754007.1| signal transduction histidine kinase-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337788|gb|ABI68636.1| PAS/PAC sensor hybrid histidine kinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 763 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 111/385 (28%), Positives = 191/385 (49%), Gaps = 42/385 (10%) Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 D+D RI K + EI L +L+ +S+ I I + +GI+ N ++L GY +++ + Sbjct: 136 DID-RIKKNEDEIRC--LSWVLQLSSNAIIIFDIQGIVQFINSRFTQLTGYEAYEVVNR- 191 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----- 551 N L L LD+ + ++ G +++ ++ +S Sbjct: 192 -------------NLRLINNLPLDVEKIFARLRAGEEWHDEVFFHNRQLEPCWWSIYCTA 238 Query: 552 --------SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 + Y + DISE KQ + L AK+ AE + K++FLA +SHEIRTPL AI Sbjct: 239 VRDEEDKITSYCSIIQDISEHKQAEENLKKAKEAAEVANRAKAEFLANMSHEIRTPLNAI 298 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANY--IDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 IG + + L NP + N I +G+ +L I++++LD SKIE+GK+ + Sbjct: 299 IGMTSL------SLLSNPEPDQKENLEIIKMAGDTLLSIIDNILDFSKIEAGKLTVEKIN 352 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720 +L E + + I++ + A EK +L+ IP ++ D ++Q+ N++ NAI FT Sbjct: 353 FNLHELIEKNITIHKARAQEKGLLLLYYIDPAIPVQVNGDPYRLQQVFNNLIGNAIKFTD 412 Query: 721 SGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 G ++ + ++ ++L+ V DTG G+T + EK + F Q +S GTGLG Sbjct: 413 HGEVEVRLKLLDIFDDHIVLQASVADTGRGITAGQQEKMFESFYQGDSSISRTYGGTGLG 472 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGT 802 L ++K +V+ GK ++ S G+ Sbjct: 473 LNISKKIVEMMQGKIWLESDIESGS 497 >gi|327440461|dbj|BAK16826.1| signal transduction histidine kinase [Solibacillus silvestris StLB046] Length = 938 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 100/360 (27%), Positives = 183/360 (50%), Gaps = 18/360 (5%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQ-NTPSVMNHYL 513 +I++ T++GI +++ G +L N+A+ + YP E+I K P ++L+ + + L Sbjct: 456 TIIDTTNEGIQFVSKYGEVLLLNKALFNIIRYPFEEIDDKVPQQLWLKHFQKIAEESDEL 515 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 L + + +E+ T T S++ + F Y+ ++ + E + H Sbjct: 516 VYFLKIAI---IEEFTNTRTMR---YSIQQDGRSPVFVEVYATSVFEGDE--KVGTMFVH 567 Query: 574 AKKIAEKE-SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 +E E KS+ ++ VSHE+RTPL++++GF+E++ + P +YIE I + Sbjct: 568 RDITSEYEVDMMKSELVSTVSHELRTPLSSVLGFTELLLAKEIKPERQKKYIET---IHK 624 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 + +++ND LDI +IESG+ +SL + + + Q+ + S N Sbjct: 625 EAKRLTNLINDFLDIQRIESGQQVYSMNKISLTALIEDVLKNFQIDPQHNIRFVDES-TN 683 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 I + AD + Q+ N++ NAI F+P+GG+III + NE V + ++D G+G+ Sbjct: 684 AI--VSADEERIIQLLFNLIGNAIKFSPNGGEIIIRMQNI-NETVQVSIQDCGIGIPESA 740 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 + + F ++ NS + + GTGLGL L+K ++ + G ++ S GT I PLYD Sbjct: 741 IPSLFQKFKRVDNSSRRKIGGTGLGLALSKEIISKHKGDIWLESEEGIGTTIFFTLPLYD 800 >gi|320157836|ref|YP_004190214.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O] gi|326424352|ref|NP_763089.2| signal transduction histidine kinase [Vibrio vulnificus CMCP6] gi|319933148|gb|ADV88011.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O] gi|319999740|gb|AAO08079.2| Signal transduction histidine kinase [Vibrio vulnificus CMCP6] Length = 646 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 127/247 (51%), Gaps = 8/247 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK+ AE + KS+FLA +SHEIRTP+ IIG + ++K + +Y Sbjct: 230 ELKSAKEQAEVANVKKSEFLATMSHEIRTPMNGIIGVASLLKEMEL----SSEQKQYVEM 285 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+ S +LDI+ND+LD SKIE+GKM + EP L + V + ++ L A+ K + Sbjct: 286 INHSSESLLDIINDILDFSKIEAGKMAISLEPFCLSDLVEQMCAIYTLKAHAKNLQFVVE 345 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTG 745 A ++P ++ D + +KQ+ N+L NA+ FT G ++ + + +V D+G Sbjct: 346 LAEDVPHTMSGDSKHLKQVLNNLLGNAVKFTERGYVKLVVAKELDAQHIPHIRFQVFDSG 405 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ + E + F Q S + GTGLGL + + +V G+ + S G+ E Sbjct: 406 IGIAKEKQELVFERFQQADGSTTRKYGGTGLGLAICRRLVSLMGGELELKSEVGLGSCFE 465 Query: 806 IIFPLYD 812 P D Sbjct: 466 FSVPCVD 472 >gi|265752927|ref|ZP_06088496.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|263236113|gb|EEZ21608.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1408 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 131/251 (52%), Gaps = 10/251 (3%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 ++K +L K ++ + K F ++HE RTPLT I+G E + NP+ IE Sbjct: 875 KQKGQLIQMSKKVQELTVDKLAFFTNITHEFRTPLTLIVGPIERALKLSY----NPQVIE 930 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 ++++R+ +L +VN L+D K+ESGKM + P + + ++E + YA+E+ I Sbjct: 931 QLHFVERNSKYLLSLVNQLMDFRKVESGKMEIVRNPGNFAKLLNELLVPFDAYASERGIT 990 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVR 742 I F I+ D ++ ++ +N++ NA+ FTP GGQI I T EE + + +R Sbjct: 991 IERRFRLPSCEIMYDEDAMHKVIVNLIGNALKFTPKGGQITIYATPLRQEEQEKLFICIR 1050 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQ--IRGE-GTGLGLPLAKAMVDANMGKFYIFSTPA 799 DTG G+ E++K F Q N I G+ GTG+GL L K +V + G + + Sbjct: 1051 DTGPGLPEEEIDKVFNRFYQSQNKTHSSINGQSGTGIGLYLCKRIVQLHGGSICAKNNQS 1110 Query: 800 KGTLIEIIFPL 810 KG I+ PL Sbjct: 1111 KGCSFRILLPL 1121 >gi|237711505|ref|ZP_04541986.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|229454200|gb|EEO59921.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] Length = 1408 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 131/251 (52%), Gaps = 10/251 (3%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 ++K +L K ++ + K F ++HE RTPLT I+G E + NP+ IE Sbjct: 875 KQKGQLIQMSKKVQELTVDKLAFFTNITHEFRTPLTLIVGPIERALKLSY----NPQVIE 930 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 ++++R+ +L +VN L+D K+ESGKM + P + + ++E + YA+E+ I Sbjct: 931 QLHFVERNSKYLLSLVNQLMDFRKVESGKMEIVRNPGNFAKLLNELLVPFDAYASERGIT 990 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVR 742 I F I+ D ++ ++ +N++ NA+ FTP GGQI I T EE + + +R Sbjct: 991 IERRFRLPSCEIMYDEDAMHKVIVNLIGNALKFTPKGGQITIYATPLRQEEQEKLFICIR 1050 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQ--IRGE-GTGLGLPLAKAMVDANMGKFYIFSTPA 799 DTG G+ E++K F Q N I G+ GTG+GL L K +V + G + + Sbjct: 1051 DTGPGLPEEEIDKVFNRFYQSQNKTHSSINGQSGTGIGLYLCKRIVQLHGGSICAKNNQS 1110 Query: 800 KGTLIEIIFPL 810 KG I+ PL Sbjct: 1111 KGCSFRILLPL 1121 >gi|83816430|ref|YP_444297.1| putative redox sensing protein [Salinibacter ruber DSM 13855] gi|83757824|gb|ABC45937.1| putative redox sensing protein [Salinibacter ruber DSM 13855] Length = 1668 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 78/252 (30%), Positives = 126/252 (50%), Gaps = 10/252 (3%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP---------- 617 K + A++ AE S KS FLA +SHEIRTPLT+I+GF+E I + G Sbjct: 1406 KEEAERARQEAEAASQAKSVFLANMSHEIRTPLTSILGFAEAIGEEVGGDDQTEKTDRSD 1465 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + P ++A I+ SG +++ + +L++SK+E+G+MNL EPV L +A+ Sbjct: 1466 VDLPALRQFAALIESSGERLMNTLTGVLNLSKLEAGEMNLAPEPVDLAAEAEKAVQEFDP 1525 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A + + + + AD V+ + N+LSNA+ +T GG + +S ++ Sbjct: 1526 QARDAGVDLAAEGGQDAVWARADEGGVQIVLRNLLSNAVKYTGEGGAVRVSARTDGKQDA 1585 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 +L V DTG+GM ++E +PF Q EGTGLGL + + G + + Sbjct: 1586 VLEVVDTGIGMDPAQVEDLFEPFRQESEGLAREYEGTGLGLAVTWKALQQMEGGVEVETE 1645 Query: 798 PAKGTLIEIIFP 809 +GT + P Sbjct: 1646 KGEGTCFTVRLP 1657 >gi|117925572|ref|YP_866189.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609328|gb|ABK44783.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 685 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 135/247 (54%), Gaps = 20/247 (8%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI------KNQRFGPLG 619 Q + +L+ ++ A++ + KS+FLA +SHEIRTP+ AIIG ++++ K+QR Sbjct: 148 QREEELTASRLKADQANQAKSEFLANMSHEIRTPMNAIIGMADLLLETELNKDQR----- 202 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 Y R+G +L+++ND+LD+SK+E+ ++ L P L V A+ + L Sbjct: 203 -----RYVQIFARAGASLLELINDVLDLSKVEADRLELEHRPFDLWALVEGAVEIFTLRT 257 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNE 735 EK + + + PR +++D + ++QI +N+L NA+ FT SG + + + Sbjct: 258 QEKGVKLDFELSARAPRYVISDQKRLRQILVNLLGNAVKFTQSGQIQLWVDVRDCEDAGG 317 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + RV+D+G+GM+ + + +PF Q S + GTGLGL + K +V+ G ++ Sbjct: 318 WLYFRVQDSGIGMSKAQQKSIFEPFVQADASVTRQHGGTGLGLAICKKLVELLSGDIWLE 377 Query: 796 STPAKGT 802 S +G+ Sbjct: 378 SELGQGS 384 >gi|124006365|ref|ZP_01691199.1| multi-sensor Hybrid Histidine Kinase [Microscilla marina ATCC 23134] gi|123988022|gb|EAY27693.1| multi-sensor Hybrid Histidine Kinase [Microscilla marina ATCC 23134] Length = 2102 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 93/270 (34%), Positives = 144/270 (53%), Gaps = 14/270 (5%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 TM +I E K+ + L AK AE S KS FLA +SH++RTPL I+G+++++K ++ Sbjct: 1610 TMTNIDERKRYEEDLQSAKAAAEAASQAKSVFLASMSHDLRTPLNGILGYAQILKKEKN- 1668 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P + I+RSG +L ++ND+L +SKIESGK+ L + + V +S+ + Sbjct: 1669 --ITPPQRDGLQIIERSGEQLLLLINDILHLSKIESGKLELENNDFNFADFVKNVVSITR 1726 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-- 733 ++A K I R +P + D + ++QI N+LSNAI FT GG + THT Sbjct: 1727 VWAENKNIDYRFESPAQLPYFVNGDEKRIRQILFNLLSNAIKFTDEGG-VTFRITHTPHP 1785 Query: 734 ----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 N + V DTG G+ + K +PF Q+ S+ + EGTGLGL + +V Sbjct: 1786 TKVLNHIFVFEVEDTGTGIPKDTIAKIFEPFHQVRGSRH-QAEGTGLGLAICNRLVKLMD 1844 Query: 790 GKFYIFSTPAKGTLIE--IIFPLYDTSHPH 817 G + ST KG+L + I P+ ++ P Sbjct: 1845 GSIQVESTLGKGSLFKLTIDMPVTNSELPQ 1874 >gi|281356192|ref|ZP_06242685.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] gi|281317561|gb|EFB01582.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] Length = 1318 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 96/352 (27%), Positives = 174/352 (49%), Gaps = 16/352 (4%) Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQ 523 + + + G +LS N V K G E++L++P + VF +T H + + Sbjct: 825 VLLFDTAGRMLSMNNEVVKALGLSAEEVLKRPCYQVFCRHDT--YPRHCPVQQALRTGEK 882 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 +L E + ++ ++ + + + D++ K+ + + + A ++ + Sbjct: 883 AFHSFSLNGHDYE-VTAIPVLDEAGKVVNVLECAV-DVTRQKELQRRTAEALELTRQAYQ 940 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS+FLA +SHEIRTPL +IIGFSE++ Q P + +YA I+ +G +L ++ND Sbjct: 941 TKSNFLAMMSHEIRTPLNSIIGFSELL--QATSPDSEELH-DYAANINTAGQTLLQLIND 997 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 +L+IS+ E+ + + E V + ++E S+ + A +K + R +P I + Sbjct: 998 VLEISRFEADLVEIPLEWVDFNRLLAEIGSIFKHMARKKGLDFRIEAPAELPEIYLNDAR 1057 Query: 704 VKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 ++QI LN++ NA+ FT GG + T + + + + VRDTG+G+ + PF Sbjct: 1058 LRQILLNLVGNAVKFTEKGGISVSADFRATDSGHGRLEITVRDTGIGIDPGLHSRIFDPF 1117 Query: 761 GQIPNSQQIRG----EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 Q + +RG GTGLGL + K ++D G + S P G+ I+F Sbjct: 1118 VQ-ADEGAVRGNRTTNGTGLGLSIVKRLLDKMGGSVTLESIPGTGSTFRILF 1168 >gi|237801067|ref|ZP_04589528.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023924|gb|EGI03981.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 1026 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 87/254 (34%), Positives = 142/254 (55%), Gaps = 12/254 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DISE +Q +L AK+ A+ S KS FLA +SHEIRTP+ A+IG E+ +K G L Sbjct: 690 DISERRQLIEELQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHGEL 749 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + IE A S N +LD++ D+LDI++IESG++ L+ E +L + V + + Sbjct: 750 -DRSAIEVAY---SSANDLLDLIGDILDIARIESGRLALNPERANLRQLVESVVRVFDGL 805 Query: 679 ANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIIS-----TTHT 732 A +K + + + + I +L D KQI N++SNAI FT GQ+ IS T Sbjct: 806 ARQKDLSLVLALDSRINTDVLIDPLRFKQILSNLVSNAIKFTQD-GQVKISLQAGDTAAP 864 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + + V+D+G+G+++ + ++ +PF Q+ N+ Q+ G GLGL + +++ G Sbjct: 865 QQLHLHVMVQDSGIGISSEDQQRLFEPFAQVDNTGQMARTGAGLGLVICRSLCVMMGGNL 924 Query: 793 YIFSTPAKGTLIEI 806 + S P +GT + + Sbjct: 925 QLDSAPGQGTRVSM 938 >gi|197337759|ref|YP_002158682.1| sensory transduction protein kinase [Vibrio fischeri MJ11] gi|197315011|gb|ACH64460.1| sensory transduction protein kinase [Vibrio fischeri MJ11] Length = 798 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 82/247 (33%), Positives = 137/247 (55%), Gaps = 10/247 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I++ Q + KL + K+ AE + K+ FLA +SHEIRTPL IIG S V+ + P+ Sbjct: 267 IAKRHQNEKKLINEKEEAENANKAKTTFLANMSHEIRTPLNGIIGMSGVLAETKLTPIQ- 325 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 ++Y N I+ S +L ++ND+LD+SKIE+G ++ +P ++ E + + +S+ A Sbjct: 326 ---LDYLNTIETSSQTLLVLINDILDLSKIEAGNFAIYSQPSNVREVIFDTLSIDIAKAT 382 Query: 681 EKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 EK + + + ++P L D +KQ+ +N+ SNA+ FT G I IS + ++ E Sbjct: 383 EKNLDLHIHISPDVPNFLTLDEHRIKQVLMNLTSNAMKFTHKGF-ISISVSFSNRVENEG 441 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + + V+D+G+G+ E + PF Q +S R GTGLGL + +++ G I Sbjct: 442 YLTIAVKDSGIGINTNAKENILNPFIQGDSSITRRFGGTGLGLTITNQLIELMGGALDIE 501 Query: 796 STPAKGT 802 S KG+ Sbjct: 502 SEQEKGS 508 >gi|189465235|ref|ZP_03014020.1| hypothetical protein BACINT_01580 [Bacteroides intestinalis DSM 17393] gi|189437509|gb|EDV06494.1| hypothetical protein BACINT_01580 [Bacteroides intestinalis DSM 17393] Length = 390 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 89/263 (33%), Positives = 139/263 (52%), Gaps = 12/263 (4%) Query: 549 PFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 P Y L M D++ +L+ A+ AE+ KS FL+ +SHEIRTPL AI+GFS Sbjct: 138 PLGDKYLLCMCRDVTSRVNALRELAAARVKAEESDRLKSAFLSNMSHEIRTPLNAIVGFS 197 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 ++ + G G+ +Y N I+++ L+L + ND+LD+S++ESG + E V+L A Sbjct: 198 RLVIDP--GHEGDKE--DYCNIIEKNSELLLCLFNDILDLSEMESGTLEFVREKVNLYHA 253 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 E +L N+ ILI + ++ D + Q+ +N+LSNA FTP+ G+I Sbjct: 254 CLEEYDSHRLKVNKGVILILDDVDEELC-VMGDRMRIMQVLMNLLSNAAKFTPT-GEIHF 311 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 N V V+DTG+G+ + K + FG+I N Q GTGLGL +++ +V+ Sbjct: 312 GYQLRGN-IVQFYVKDTGIGIPANRVAKIFERFGKINNFAQ----GTGLGLTVSRMLVER 366 Query: 788 NMGKFYIFSTPAKGTLIEIIFPL 810 G+ ++ S GT PL Sbjct: 367 MGGRIWVRSGEGIGTTFFFTLPL 389 >gi|326797386|ref|YP_004315206.1| ATP-binding region ATPase domain protein [Marinomonas mediterranea MMB-1] gi|326548150|gb|ADZ93370.1| ATP-binding region ATPase domain protein [Marinomonas mediterranea MMB-1] Length = 2241 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 84/256 (32%), Positives = 135/256 (52%), Gaps = 14/256 (5%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L+ AK +AE+ + KS FLA +SHEIRTP+ AIIG S + L P ++ ++ Sbjct: 1500 ELNVAKVLAEEANRAKSLFLATMSHEIRTPMNAIIGLSRL-------TLKTPLNLDQKDF 1552 Query: 630 IDR---SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 +D+ S +L I+ND+LD SKIE+ KM L L +S +++ L A EK + + Sbjct: 1553 MDKILESAEGLLGIINDILDYSKIEAHKMVLEQTRFELQSVMSRIVTICALKAKEKALEL 1612 Query: 687 RTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVR 742 +++P +L D ++QI N++SNAI FT G ++ + T +V V Sbjct: 1613 HVDIDSDVPALLLGDPLRLQQILTNLVSNAIKFTEKGFVGIRVSLEQTQEGTPQVRFDVT 1672 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D+GVG+T + KPF Q S + GTGLGL + + +V+ G+ ++ S KG+ Sbjct: 1673 DSGVGLTQEHQRELFKPFTQADASITRKYGGTGLGLAICRQLVELMKGQIWVRSHLGKGS 1732 Query: 803 LIEIIFPLYDTSHPHD 818 P++ +D Sbjct: 1733 TFGFRIPVHSYQEDND 1748 >gi|89093358|ref|ZP_01166307.1| sensory transduction histidine kinase [Oceanospirillum sp. MED92] gi|89082337|gb|EAR61560.1| sensory transduction histidine kinase [Oceanospirillum sp. MED92] Length = 1068 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 81/258 (31%), Positives = 148/258 (57%), Gaps = 10/258 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +++ D++ ++++ +L +K+ AE + KSDFLA +SHEIRTP+ AI+GF+++++ + Sbjct: 284 VSLDDVTLLEEKELELRRSKEEAEAANRAKSDFLANMSHEIRTPMNAILGFADILRRDKK 343 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN---LHFEPVSLDEAVSEAI 672 +++ N I SG +LD++ND+LD+SK+ESG++ L +PV L + + Sbjct: 344 KL--QTDQLKHINTISTSGQHLLDLINDILDLSKVESGRLEVEALDCKPVQL---IHHVL 398 Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTT 730 +++ A+EK + ++ ++P +I D V+QI N++ NAI FT GG + +S Sbjct: 399 QFMKVKADEKGLELKFVADTSLPEQIETDPGRVRQILTNLIGNAIKFTEQGGVTVHVSVV 458 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + +++ + V DTG+GMT + + + F Q +S R GTGLGL +++ A G Sbjct: 459 GDNPKQMKIAVVDTGIGMTQQQTDSVFEAFVQADSSITRRFGGTGLGLSISQKFAHALGG 518 Query: 791 KFYIFSTPAKGTLIEIIF 808 + S GT ++ Sbjct: 519 DILVTSEKGVGTTFTLVL 536 >gi|219846968|ref|YP_002461401.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219541227|gb|ACL22965.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 2783 Score = 128 bits (321), Expect = 5e-27, Method: Composition-based stats. Identities = 78/236 (33%), Positives = 127/236 (53%), Gaps = 5/236 (2%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A+KE K F++ VSHE+RTPLTAI G+ +V+ L P + Y N I + N + Sbjct: 2542 ADKE---KRQFISDVSHELRTPLTAIKGYVDVLLLTASLNL-TPDQLSYLNIIKNNTNRL 2597 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 ++ D+L+ S+ +S K L F V + + E + ++L K + +R + ++P + Sbjct: 2598 RALIEDILEFSRPDS-KKKLTFTQVDIPTVIEEVVQSLRLEYERKGMKVRIDTSPSLPPV 2656 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 +AD + V QI N+ SNA+ +T GG I + + + V DTGVGM+ +L+K Sbjct: 2657 IADQKRVSQIIFNLFSNAVKYTYEGGSITVRAFVNRANMMQIEVEDTGVGMSPEQLKKLF 2716 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 +PF + N + GTGLGL +AK +V+ + G+ ++ S KG+ PL T Sbjct: 2717 RPFYRADNPLRDIAGGTGLGLSIAKQLVEMHGGEIWVTSELGKGSTFSFAIPLQQT 2772 >gi|146337386|ref|YP_001202434.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146190192|emb|CAL74184.1| Putative Sensor histidine kinase with PAS and Response regulator receiver domains [Bradyrhizobium sp. ORS278] Length = 754 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 100/357 (28%), Positives = 165/357 (46%), Gaps = 16/357 (4%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 + E D I + ++G I+ N A ++ G E+++ F L + S + T + Sbjct: 113 LFEQQGDLIVMREQDGTIVFVNDAYCQMAGLDRENLVGSKFAFALIEQGDSALEPSGTRV 172 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574 Q +E S + ++ R ++ + D+++ + + L+ A Sbjct: 173 HD----QRIE-----SAIGPRWIAWREALVRSDAGHPAVLQCVGRDVTDRTETERALADA 223 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 + A + KS FLA SHEIRTPL I+G ++ PL P YA + SG Sbjct: 224 RDQANAANRAKSRFLAMASHEIRTPLNGILGMGGLLLET---PL-TPEQTTYAKAVRASG 279 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 ++ ++N+LLD SKIE+GK+ L +P SL + E L+ A K++ I + Sbjct: 280 EALMSLINELLDYSKIEAGKLALEAQPFSLAALIEEITELLAPRAQAKQLEIAAYMDERL 339 Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 P + D ++Q+ LN+ NAI FT GG +I+ E+ +VRDTG+G+ Sbjct: 340 PTWVTGDAARLRQVLLNLAGNAIKFTAKGGVAVIAEPGIWPNEISFQVRDTGIGIAAEAQ 399 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 E+ + F Q +S GTGLGL ++ +V G+ + S P G E+ PL Sbjct: 400 ERIFREFEQADDSVARSFGGTGLGLAISDRIVKRMGGRISLQSEPGAGATFEVCVPL 456 >gi|222055917|ref|YP_002538279.1| histidine kinase [Geobacter sp. FRC-32] gi|221565206|gb|ACM21178.1| histidine kinase [Geobacter sp. FRC-32] Length = 645 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 136/246 (55%), Gaps = 6/246 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L +++ AE+ + KS FLA +SHE+RTP+ I+G +++ + G L + E Sbjct: 249 ELEQSRQAAEEGNRAKSQFLANMSHELRTPMNGILGVLQLLLSGHAGQL-EKKQRELLLK 307 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 +SG+L+L I++D+LD+SKIE+GK+ +H +P SL + +S+A+ A K + + S Sbjct: 308 ATKSGDLLLQIISDILDLSKIEAGKLQIHEQPFSLRKCLSDAVDYFSSEAQGKGLHLTLS 367 Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG----GQIIISTTHTSNEEVILRVRDT 744 A ++P ++ D ++Q+ LN++ NA+ FT G + + T T E+ + DT Sbjct: 368 IAPDVPDVVKGDQVRLRQVLLNLIGNAVKFTDHGRVEVKAVTGNKTATGETEITFTINDT 427 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + F Q+ +S + R GTGLGL ++ +V+ G+ S +G+ Sbjct: 428 GIGIPADKKHLLFRSFSQVDSSDRRRYGGTGLGLAISSQIVEMMGGRIAFDSREGEGSTF 487 Query: 805 EIIFPL 810 PL Sbjct: 488 FFTVPL 493 >gi|113475126|ref|YP_721187.1| GAF sensor hybrid histidine kinase [Trichodesmium erythraeum IMS101] gi|110166174|gb|ABG50714.1| GAF sensor hybrid histidine kinase [Trichodesmium erythraeum IMS101] Length = 853 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 128/246 (52%), Gaps = 8/246 (3%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY-----IE 625 L A + AE + KS+FLA +SHE+RTPLT +IG S + +G G + + Sbjct: 464 LYDAVQSAESANRAKSEFLATMSHELRTPLTCVIGISSTLLQWSYGNRGAKKMPIQKQRD 523 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA--NEKR 683 Y I SG +L+++ND+LD+S++E+GK L SL + E + + A NE + Sbjct: 524 YLKIIHDSGEHLLELINDILDLSQVEAGKTVLKISEFSLSKISYELLQNFREKAEQNEVK 583 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 ++ + + AD R VKQI N+LSN I FTP+GG + + N I +V D Sbjct: 584 LIFEPTVNPQLDLFAADQRRVKQILFNLLSNGIKFTPNGGSVRLKVMRYKN-TAIFQVED 642 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G++ + K F Q+ + + GTGLGL L K +V+ + G + ST G+ Sbjct: 643 TGMGISQEQKPLLFKKFQQLNSPYNRQQGGTGLGLALTKQLVELHNGIIEVESTVNVGST 702 Query: 804 IEIIFP 809 + P Sbjct: 703 FTVKLP 708 >gi|218781754|ref|YP_002433072.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218763138|gb|ACL05604.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1104 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 106/367 (28%), Positives = 176/367 (47%), Gaps = 24/367 (6%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++LEAT D + + +++ ++ N A +LFG+ E++L KP + P T+ Sbjct: 326 ALLEATPDAVTVYDKDAKVIYVNPAFEQLFGWTAEEVLGKPLDFVPSEERPK------TD 379 Query: 516 ILSLDLRQ---TLEKITLGSTKEEKLLSLRIII-----KKLPFSSCYSLTMHDISEWKQE 567 L +R+ LE+I TK+ +LL +R K F ++ DI++ K+ Sbjct: 380 ELIARMRKGESVLEEIKR-YTKDGRLLYIRASASMFWDKDRHFLGTVVIS-RDITDRKKA 437 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + L AKK AE + KS F+A +SHEIRTP+ +IG + ++ + + R E+A Sbjct: 438 EEALRKAKKDAETANIAKSQFVANMSHEIRTPMNGVIGMTGLLLDTDL----DERQREFA 493 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I S +L ++ND+LD SKIE+ K+ L L + + L+ + A K + Sbjct: 494 ETIQSSAANLLTVINDILDFSKIEADKLELESIGFDLRFTLEDVSDLLAIKAQAKNLEFV 553 Query: 688 TSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILR--VRD 743 ++P +L D ++Q+ +NI +NAI FT G ++ E+ LR + D Sbjct: 554 CMVDPDVPSLLVGDPGRLRQLIINICNNAIKFTREGEVVVRVVGEEIKEDKAYLRFTITD 613 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ + PF Q+ S GTGLGL + K +V G+ + S P +G Sbjct: 614 TGIGIPEDKQNDLFAPFTQMDASTTREYGGTGLGLSICKRLVQLMNGEIGVSSRPGEGAT 673 Query: 804 IEIIFPL 810 P Sbjct: 674 FWFSLPF 680 >gi|328545814|ref|YP_004305923.1| Alkaline phosphatase synthesis sensor protein phor [polymorphum gilvum SL003B-26A1] gi|326415554|gb|ADZ72617.1| Alkaline phosphatase synthesis sensor protein phor [Polymorphum gilvum SL003B-26A1] Length = 807 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 132/231 (57%), Gaps = 4/231 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ K+ F+ VS+E+R+PLT IIGF++++ + +FG L + + EYA+YI S + +L Sbjct: 569 EQADQLKNAFIQHVSYELRSPLTNIIGFAQLLSDPKFGEL-SRKQGEYADYILSSSSALL 627 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 I+ND+LD++ I++G M L V + + V+ A+ ++ + +I++RT +I + Sbjct: 628 AIINDILDLATIDAGIMELDLGEVDVADTVAAAVEGLKDRLADAKIVLRTHVPGDIGTLY 687 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 AD R ++Q+ N+++NA+ ++ GG +I T + V+ V+D G G+ +++ Sbjct: 688 ADERRLRQVLFNLIANAVRYSDEGG-VIDVTCGRKDGAVVFTVKDHGCGIPQEMIDQVFS 746 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F + + + G GLGL + K+ V+ + G+ I S GT + FP Sbjct: 747 RF--VGHDAGTKRRGAGLGLSIVKSFVELHGGQVEIQSREGVGTTVTCTFP 795 >gi|300866672|ref|ZP_07111358.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300335346|emb|CBN56518.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 1013 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 143/241 (59%), Gaps = 7/241 (2%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E +Q ++ AK+ A+ ++ KS+FLA +SHE+RTPL I+G+++++ QR PL Sbjct: 542 EIQQVNVEIQQAKEFADAANNAKSEFLANMSHELRTPLNGILGYAQIL--QRSEPLSEKG 599 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + + + I + G+ +L ++ND+LD+SKIE+ K++L+ P+ L + I + ++ A +K Sbjct: 600 H-KGIDIIYQCGSHLLTLINDILDLSKIEARKLDLYPAPLHLPSFLQNVIEINRIRAEQK 658 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 I + +P + AD + ++Q+ +N+L NAI FT G + +++ ++ Sbjct: 659 GITFDYQANSQLPIGVYADEKRLRQVLINLLGNAIKFTDKGS--VTFKVEPIGQKIRFQI 716 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG GMT+ ++EK PF Q+ ++++ + EGTGLGL ++ +V + + S P +G Sbjct: 717 ADTGTGMTSEQVEKIFLPFEQVGDTKK-QAEGTGLGLAISHKIVALMGSEITVDSIPGEG 775 Query: 802 T 802 + Sbjct: 776 S 776 >gi|75910629|ref|YP_324925.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704354|gb|ABA24030.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1002 Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 137/252 (54%), Gaps = 16/252 (6%) Query: 578 AEKE-SSHKSDFLARVSHEIRTPLTAIIGFSEVIK---NQRFGPLGNPRYIEYANYIDRS 633 AEKE K+DF++ VSHE+RTPLT+++GF+ +I+ + P+ + + I R Sbjct: 521 AEKEIDKMKTDFISTVSHELRTPLTSVLGFASIIQEKLQKDVFPILSTEDRKLQKTIKRV 580 Query: 634 G---NLVLD-------IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 G N+++ ++ND+LDI+K+E+GK+ +P+ E + A + Sbjct: 581 GDNLNIIVSEAERLTSLINDVLDIAKMEAGKVEWQMQPIDPGELLDWATTSTAALFETNG 640 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + + T + +P+I+ D + Q+ +N++SNA+ FT G + + V + V D Sbjct: 641 LQLLTEIESGLPQIIGDRNRLLQVLINLISNAVKFTEFGS--VTCRVKQDKDGVCISVID 698 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TGVG+ + K + F Q+ ++ + +GTGLGLP+ K +V+ + G+ ++ S P G++ Sbjct: 699 TGVGIAPEDQPKVFEKFRQVGDTLTDKPKGTGLGLPICKQIVEHHGGRIWVESEPGHGSV 758 Query: 804 IEIIFPLYDTSH 815 P+Y ++H Sbjct: 759 FSFHIPIYASNH 770 >gi|328466858|gb|EGF37968.1| putative histidine kinase [Lactobacillus helveticus MTCC 5463] Length = 619 Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 103/382 (26%), Positives = 186/382 (48%), Gaps = 42/382 (10%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E +L S+L SDG+ +R G + N ++I+ +P L Sbjct: 262 ERRRLDSVLSHMSDGVLATDRHGNVSVVNHMALSYLNADEDEIINRPIAEVLG------- 314 Query: 510 NHYLTEILSLDLRQTLEKITLG---STKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEW 564 L + S DL + ++I + T++E +L S +I + F S +HD++E Sbjct: 315 ---LKDTSSQDLISSQKEIVVTVKPGTRDEIILHASFSLIKRVTGFVSGSVCVLHDVTE- 370 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGNPRY 623 Q+KN+ S + F++ VSHE+RTPLT++ + E + + + P P++ Sbjct: 371 -QQKNENSQRQ------------FISNVSHELRTPLTSLQAYIEALNEEAWKDPEIAPKF 417 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY----- 678 +E A + + ++ ++NDLL +S+++ G + E V+L++ VS ++ + Sbjct: 418 LEVAQ---QETSRMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVSHILNRFDMIVKTDK 474 Query: 679 --ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 ++K+ I+ N + D + Q+ NI++NAI ++P GG I + TH S Sbjct: 475 NKGHKKKYTIKRELGNQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTH-SQGH 533 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 VIL + D G+G+ +L K F ++ ++ GTGLGL +AK +V+A+ G+ + S Sbjct: 534 VILSISDQGLGIPRKDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADS 593 Query: 797 TPAKGTLIEIIFPLYDTSHPHD 818 + KG+ I P Y+T D Sbjct: 594 SEGKGSTFYISLP-YETMTEED 614 >gi|186681490|ref|YP_001864686.1| integral membrane sensor signal transduction histidine kinase HepK [Nostoc punctiforme PCC 73102] gi|4336932|gb|AAD18016.1| histidine kinase [Nostoc punctiforme PCC 73102] gi|186463942|gb|ACC79743.1| integral membrane sensor signal transduction histidine kinase HepK [Nostoc punctiforme PCC 73102] Length = 574 Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 80/259 (30%), Positives = 134/259 (51%), Gaps = 11/259 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I + +L AK++AE S KS FLA VSHE+RTPL A+IG S+++++ + Sbjct: 314 IERVSERTKELQQAKELAEAASKAKSVFLANVSHELRTPLNAVIGLSQLLEDDATDLGLS 373 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 +I I+ +G +L ++N++LD+SKIE+GKM L+ E + ++ + V+ Sbjct: 374 ADFITDLETINSAGKHLLHLINEILDLSKIEAGKMTLYPETFEIATLINNVVLTVKPAIE 433 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---- 736 + ++ F + + AD ++Q+ LN+LSNA FT +G + T EE Sbjct: 434 KNANVLEVHFDEQLGTMYADQTRMRQVLLNLLSNASKFTTNGK--VTLTVKREKEELRLD 491 Query: 737 -----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + V DTG+GM+N + ++ +PF Q S + GTGLGL +++ G+ Sbjct: 492 APLGMITFTVTDTGIGMSNRQQQQLFQPFTQGDTSTTKKYGGTGLGLAISRHFCQMMGGE 551 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + S P G+ I P+ Sbjct: 552 IIVKSQPGLGSTFTIRLPM 570 >gi|115379534|ref|ZP_01466626.1| sensory box histidine kinase/response regulator [Stigmatella aurantiaca DW4/3-1] gi|115363462|gb|EAU62605.1| sensory box histidine kinase/response regulator [Stigmatella aurantiaca DW4/3-1] Length = 603 Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 81/250 (32%), Positives = 134/250 (53%), Gaps = 8/250 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI++ + + +L A+K AE+ + K+DFL+ +SHEIRTP+ AIIG S ++ Sbjct: 47 TLFDITDRRNYERELVLARKRAEEATRAKADFLSMMSHEIRTPMNAIIGLSNLLGQATLP 106 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL Y EYA + S +L ++N +LD +K+E+GK+ L L + + S + Sbjct: 107 PL----YQEYARILQSSSENLLVLLNSILDFNKMEAGKLMLEERRFDLRQLLHGLCSTLS 162 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 + A EK++ IR F +P +L D + Q+ N+L NAI FT G + + H Sbjct: 163 VKAEEKKLSIRVEFDPEVPNALLGDPVKLGQVLTNLLGNAIKFTEQGAVTLAVRRLHGDA 222 Query: 735 EEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 E V L +V DTG+G+ +L + + F Q + G+GLGL + + ++ + K Sbjct: 223 EGVFLGFKVSDTGMGIPQDQLTQIFEAFTQASYDITWKHGGSGLGLAICQKLLALHGSKM 282 Query: 793 YIFSTPAKGT 802 + S P +G+ Sbjct: 283 RVESVPGEGS 292 >gi|117618531|ref|YP_854948.1| hybrid sensory kinase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559938|gb|ABK36886.1| hybrid sensory kinase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 888 Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 134/242 (55%), Gaps = 9/242 (3%) Query: 566 QEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 Q KN+ L A ++AE + KSDFLA +SHEIRTP+ AI+G S + R +P+ Sbjct: 138 QAKNQELEVAYELAEGATRAKSDFLANMSHEIRTPMNAILGMSHLALQTRL----DPQQF 193 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +Y + I RS +L I+ND+LD SKIE+GK++L LD + +LV A K I Sbjct: 194 DYVSKIQRSAQHLLGIINDILDFSKIEAGKLDLERIEFDLDHVLENLATLVGEKAEAKGI 253 Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR-- 740 + + + +L D + QI +N +NA+ FT G ++ +S +EV+L Sbjct: 254 ELLFEVDHQLDTLLYGDPLRLGQILINYANNAVKFTEQGEILVKVSCLEKQPQEVLLHCS 313 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+DTG+GM+ + ++ + F Q +S + GTGLGL +++ + + G+ + S P + Sbjct: 314 VQDTGIGMSQEQQQRLFQSFQQADSSTTRKYGGTGLGLAISRKLAELMGGEVGVQSEPGR 373 Query: 801 GT 802 G+ Sbjct: 374 GS 375 >gi|298530364|ref|ZP_07017766.1| PAS/PAC sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509738|gb|EFI33642.1| PAS/PAC sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 919 Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 104/369 (28%), Positives = 194/369 (52%), Gaps = 23/369 (6%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-KPFTVFLEQNTPSVMNHYLT 514 ++++ + + I + + EG + N A GY E++L F + +Q + + +Y Sbjct: 473 ALVDQSVEMIYLHDMEGRFIEVNAAAVSNTGYTREELLSMNVFDLHTDQLSQEEVKNYWQ 532 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLS 572 +L Q++ T K+ ++ + + I K+ +S+ + + DI+E KQ +L Sbjct: 533 SMLP---GQSMTVETEHHKKDGSVIPVEVKIGKIYYSNQEHIMALVQDITERKQVHQELI 589 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A++ AE+ + KS FLA +SHEIRTP+ A++GF+ +++N P + A I R Sbjct: 590 -ARRSAEEANRAKSRFLANMSHEIRTPMNAVLGFARMLEND---PALPAKQAAQAGTIVR 645 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRTSFA 691 SG+ +L ++N +LD+S+IE+G+ LH E L + + +++ +L A +K + L+ Sbjct: 646 SGDHLLQLLNSILDMSRIEAGQSGLHPEDFHLPGLIDKLMTMFELSAQDKGLELVLEKDP 705 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIIST-----THTSNEE----VILRV 741 + P + AD + QI N+LSNAI FT +G ++ IS+ T+ EE ++ +V Sbjct: 706 HLPPDLHADQGKLLQILTNLLSNAIKFTSTGEVKLTISSKPPGPADTACEEQDLGLVFQV 765 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +D+G G+T + + +PF Q N ++ GTGLGL +++ G + S +G Sbjct: 766 QDSGPGITAQDQAQLFEPFFQTQN--KMHPGGTGLGLTISREYAVLMGGNLTVSSQEGRG 823 Query: 802 TLIEIIFPL 810 + + P+ Sbjct: 824 SCFRLEIPV 832 >gi|167588844|ref|ZP_02381232.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ubonensis Bu] Length = 496 Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 129/222 (58%), Gaps = 3/222 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KSDFL+ +SHE+R+PL AI+GF++++ + P P + I R+G +L+++ND+ Sbjct: 117 KSDFLSSMSHELRSPLNAILGFAQLMASDL--PPPTPSQQASIDQILRAGWHLLELINDV 174 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD++KIESG++ + EPVSL +A+ E S+++ A ++ I + + + AD Sbjct: 175 LDLAKIESGQVAISPEPVSLRDALRECESMIEPQARQRGIRVSFPEVESHCHVRADRTRF 234 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +QI LN+LSNAI + G + + + + + VRDTG+G++ +L + +PF ++ Sbjct: 235 RQILLNLLSNAIKYNRPSGAVDVDCDLRAPGRIRVSVRDTGLGLSQEQLGQLFQPFNRLG 294 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 EGTG+GL +AK + + G ST KG++ I Sbjct: 295 QDAGAE-EGTGIGLVVAKRLTELMGGAIGADSTVGKGSVFWI 335 >gi|73539664|ref|YP_300031.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134] gi|72123001|gb|AAZ65187.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134] Length = 948 Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 80/254 (31%), Positives = 137/254 (53%), Gaps = 8/254 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+++ ++ L AK AE + K FLA +SHEIRTP+ I+G E+++N P Sbjct: 364 DVTDVHRQAEALHEAKDAAEADLRAKEGFLAMMSHEIRTPMNGILGLVELLRNTALTP-A 422 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + A+ SG+ + I++D+LD ++IE+G++ + PV L E + SL+ A Sbjct: 423 QHRMLTLAH---ESGHALAQILDDILDYARIEAGRLAIVPAPVDLRELLDSVSSLLLPQA 479 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 +K + +R + ++P + AD ++QI N+L NAI FT G + ++ TS+ E Sbjct: 480 QQKGLQLRVHVSADVPATVRADGIRMRQILFNLLGNAIKFTDRGSVTLHASAETSDGETA 539 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++L V+DTG+G+ + ++ + PF Q S R GTGLGL +++++ G + Sbjct: 540 ALLLEVQDTGIGIASADMPRLFTPFMQGERSVTRRMGGTGLGLAISRSLAAMMGGSLVLT 599 Query: 796 STPAKGTLIEIIFP 809 S GT + P Sbjct: 600 SEEGTGTTASLRVP 613 >gi|288941472|ref|YP_003443712.1| histidine kinase [Allochromatium vinosum DSM 180] gi|288896844|gb|ADC62680.1| histidine kinase [Allochromatium vinosum DSM 180] Length = 547 Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 91/273 (33%), Positives = 133/273 (48%), Gaps = 30/273 (10%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L+ A+ AE + KS+FLA +SHEIRTPL AIIG E++ R + EY + Sbjct: 130 ELARARHEAESANRAKSEFLANMSHEIRTPLNAIIGIGELLAKTRL----DATQREYVHI 185 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQLYANEKRILI 686 I+ SGN +L ++ D+LD SKIE+G++ L F P + EA+ LVQL A EK + I Sbjct: 186 IETSGNAMLSLIEDILDYSKIEAGRLELDAVRFAPAV---CIREAVGLVQLKAREKGLRI 242 Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-------GQIII-------STTH 731 + IP L D +QIA+N+L NA+ FT G G I+ T Sbjct: 243 DVAVDPGIPGYFLGDSHRFRQIAINLLGNAVKFTEQGRIGVSLNGHSIVPEDAGQDRTMS 302 Query: 732 TSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 S+E +++L V DTG+G+ F Q+ S R GTGLGL + + + Sbjct: 303 QSDEAWYQLVLTVEDTGIGIPPDRQSHIFAKFSQVDASTTRRYGGTGLGLAICRQLARLL 362 Query: 789 MGKFYIFST--PAKGTLIEIIFPLYDTSHPHDC 819 G + S P +G+ + H+ Sbjct: 363 GGDIEVESAGIPGQGSRFRCTVTMRACRRQHEA 395 >gi|329298019|ref|ZP_08255355.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Plautia stali symbiont] Length = 950 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 85/258 (32%), Positives = 132/258 (51%), Gaps = 7/258 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 447 DVSARVRMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDMLQTKSL-PKG 505 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + N S +L+L I++D+LD SKIES ++ + P S E V+ S Sbjct: 506 VDSLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEQRPFSPREVVNHIASNYLSLV 562 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 KR+ + N++P L D ++Q+ N+L+NAI FT +G II + + Sbjct: 563 VRKRLTLYVFIENDVPLALDGDPLRLQQVISNLLNNAIKFTHTG--CIILHAYVKEGYLA 620 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 RVRDTGVG+ E+ + PF Q+ + Q +GTGLGL + + +++ G + S P Sbjct: 621 FRVRDTGVGIPAKEITRLFDPFFQVGSGVQRNFQGTGLGLAICEKLINMMDGDIEVDSEP 680 Query: 799 AKGTLIEIIFPLYDTSHP 816 G+ + P+Y P Sbjct: 681 GMGSQFVVRIPIYAGQQP 698 >gi|300864607|ref|ZP_07109465.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300337356|emb|CBN54613.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 708 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 87/272 (31%), Positives = 145/272 (53%), Gaps = 3/272 (1%) Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 +K ++ L L + + + S L +I+E K+ + L A AE S KS FLA + Sbjct: 423 SKAKQELELTVENRTVQLKSANKLLRFEIAERKRAEVALQEALHKAEAASRAKSTFLANM 482 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHE+RTPL AIIG+SE+++ + G + I +G +L ++ND+LD+SKIE+ Sbjct: 483 SHELRTPLNAIIGYSEMLE-ELASDEGLEDLLPDIQKIRSAGKHLLTLINDILDLSKIEA 541 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 GKM L+ E L + V + I+ + A++ + S +++ + DL V+QI N+L Sbjct: 542 GKMELYLESFDLADLVGDVIATLHPLAHKNSNKLEVSCCSDLGVVFTDLTKVRQILFNLL 601 Query: 713 SNAIHFTPSGGQIIISTTH--TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 SNA+ FT +G + +T ++++ V L V DTG+GM+ + + + F Q S + Sbjct: 602 SNALKFTENGTVRLSATREMGSNSDWVYLCVADTGIGMSVEQQQCLFEVFNQGDASTTRK 661 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GTGLGL +++ G + S G+ Sbjct: 662 YGGTGLGLAISRRFCQMMGGDITVESELGVGS 693 >gi|325679716|ref|ZP_08159290.1| HDIG domain protein [Ruminococcus albus 8] gi|324108531|gb|EGC02773.1| HDIG domain protein [Ruminococcus albus 8] Length = 1203 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 82/257 (31%), Positives = 138/257 (53%), Gaps = 10/257 (3%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 F S Y L D +E + +L +++A++ + KS FLA +SHEIRTP+ A++G E+ Sbjct: 308 FGSLYMLV--DDTEHYKYMEQLKEQRQLADRANKAKSAFLASMSHEIRTPINAVLGMDEM 365 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 I + + I YA I +G +L ++ND+LD SK+E GKM L L A++ Sbjct: 366 ILRES----SERQIIGYAEDIRTAGRTLLSLINDILDFSKVEQGKMELVPTQYELGSAIN 421 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIII 727 + +++V+ A++K + +P +L D VKQ ALN+L+NA+ +T G + + Sbjct: 422 DLVNMVRPRADKKGLKFEVKVDPKMPHLLYGDEIRVKQCALNLLTNAVKYTEKGSVRFEV 481 Query: 728 STTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + + + LR + DTG G+ ++EK PF +I + EGTGLG+ + ++ Sbjct: 482 GFEKSGEKSIKLRFTIADTGAGIREEDMEKLFSPFSRIEEGKNRSIEGTGLGMSITVQLL 541 Query: 786 DANMGKFYIFSTPAKGT 802 + K + ST KG+ Sbjct: 542 ELMGSKLDVDSTYGKGS 558 >gi|254504351|ref|ZP_05116502.1| hypothetical protein SADFL11_4390 [Labrenzia alexandrii DFL-11] gi|222440422|gb|EEE47101.1| hypothetical protein SADFL11_4390 [Labrenzia alexandrii DFL-11] Length = 1190 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 108/383 (28%), Positives = 193/383 (50%), Gaps = 17/383 (4%) Query: 440 TRINKRKMEIEVMQ--LCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKP 496 T + KR+ E+ Q L +++ A+ DGI +++ G +L + A ++FG+ VE + RK Sbjct: 536 TELKKREQELVSSQGLLRNVVSASFDGIIVMDGSGTVLDFSPAAEEVFGWSAVELVGRKM 595 Query: 497 FTVFLEQNTPSVMNHYLTEILSLD----LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 + + ++ + L + L L + +E L E ++ L I + Sbjct: 596 SDYIIPEKYRAMHDAGLEKFLKTGEGPVLGKRIEIEGLHREGHEIIVELAIRHTRGEKGP 655 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 + + DI+E K + L AK+ AE + K+ FLA +SHEIRTP+ ++G ++++ Sbjct: 656 LFLGYVRDITERKAAEEALRVAKEKAEAANEAKAQFLAMMSHEIRTPMNGVLGILSLLRD 715 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 P+ Y++ A SG +L+++ND+LD SK+E+G+ L P L V Sbjct: 716 TDLDPV-QKAYVKTAR---ESGRSLLELINDILDFSKLEAGRTELEKAPFRLKTVVKSIA 771 Query: 673 SLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 L A EK + I ++ ++P++++ D ++Q+ LN++SNA+ FT G I IS + Sbjct: 772 DLFMPIAQEKGLTIDLNYPADVPQVVSGDAGRLRQVLLNLVSNAVKFTEI-GSIDISVSL 830 Query: 732 TSNEEV--ILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 ++ V + R V+DTG+G+ + + F I S + GTGLGL ++K + Sbjct: 831 DEDDPVQPVFRFTVKDTGIGIAKDKHQTLFGDFVTIDTSYTKKQGGTGLGLAISKRLSSL 890 Query: 788 NMGKFYIFSTPAKGTLIEIIFPL 810 G+ ++ S P G+ PL Sbjct: 891 MDGEIHVESLPGAGSTFHFCVPL 913 >gi|115391625|ref|XP_001213317.1| hypothetical protein ATEG_04139 [Aspergillus terreus NIH2624] gi|114194241|gb|EAU35941.1| hypothetical protein ATEG_04139 [Aspergillus terreus NIH2624] Length = 2330 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 87/281 (30%), Positives = 142/281 (50%), Gaps = 29/281 (10%) Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAK------KIAEKESSH-----------KSDFLA 590 L F ++ + S + +K L+ A+ K+AE E+ H KS FLA Sbjct: 1829 LLFREVRKVSATNASMVEAQKRALAQAREAEQKAKVAEAEAKHNVKLKEDAAKAKSIFLA 1888 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SH++RTP+ +IG SE++K + N EY I + +L ++ND+LD SK+ Sbjct: 1889 NISHDLRTPMNGVIGLSELLKGTKL----NREQDEYVESIRVCADTLLTLINDILDFSKL 1944 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP---RILADLRSVKQI 707 E+GKM + P+++ E +SE + ++ Y + R L + +P + D + QI Sbjct: 1945 EAGKMKISTVPLNIKETISEVVRALR-YTHRDRGLETIEDLDKVPPDLVVFGDPVRLHQI 2003 Query: 708 ALNILSNAIHFTPSGGQIIIS-TTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIP 764 +N+LSN+ FTP G + + T V L V DTG+G+ + + +PF Q Sbjct: 2004 FMNLLSNSYKFTPKGSVTVAARVTREGKGRVRLECAVTDTGIGIPEEQKSRLFRPFSQAD 2063 Query: 765 NSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLI 804 +S G+GLGL + KA++ D G ++ STP KGT + Sbjct: 2064 SSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGKGTTV 2104 >gi|91204590|emb|CAJ70818.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 546 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 80/239 (33%), Positives = 122/239 (51%), Gaps = 15/239 (6%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQ---------RFGPLGNPRYI----EYANYID 631 KS FL+ VSHE+RTPLTAIIGF+ +IK + + + + I E N I Sbjct: 306 KSGFLSTVSHELRTPLTAIIGFTNIIKKRLDTFIFPQIETNAIKSQKAIQQIKENINIIL 365 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 G + +++ND+LD++KIE+GK+ S+ E + A + +K + + Sbjct: 366 SEGERLTNLINDVLDLAKIEAGKIEWKRHQTSVTEVIMNATAATTALIEQKGLALNVDIE 425 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 NIP D Q+ +N++SNAI FT G I ++ ++ + V DTGVG+ Sbjct: 426 KNIPDFYGDKNRFIQVVINLISNAIKFTDKGA--ISCYAKQTDNKIQVTVMDTGVGIAPE 483 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 LEK F Q+ ++ + GTGLGLP+ K +V+ + G + S P KGT PL Sbjct: 484 NLEKIFDKFKQVGDTLTNKPGGTGLGLPICKQIVEYHGGSIHAESEPNKGTAFSFTIPL 542 >gi|16126740|ref|NP_421304.1| sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] gi|221235523|ref|YP_002517960.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000] gi|13424056|gb|AAK24472.1| sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] gi|220964696|gb|ACL96052.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000] Length = 637 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 86/266 (32%), Positives = 136/266 (51%), Gaps = 7/266 (2%) Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 S +T DI+E K+ + ++ A ++AE S+ KSDFLA ++HE+RTPLTAIIGF+EV+ Sbjct: 232 SGILLVTSRDITERKRLELDIAKALQMAEAASAAKSDFLANMTHELRTPLTAIIGFAEVL 291 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + R L + + +D S N +L +VND+LD S++E+G + L P S Sbjct: 292 RRSR--NLNKTAARQVGHILDAS-NTLLSVVNDVLDFSRLEAGGLELDPAPFDPAAMASS 348 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 LV A K + + + + D + Q+ LN LSNA+ FT G + Sbjct: 349 CAGLVAERAEAKGLAVEVRAPRGLKPMNLDGPRLSQVLLNFLSNAVKFTSHGAITVALRQ 408 Query: 731 HTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 ++ +LR V DTG+G+ E F Q + R GTGLGL +++ +++ Sbjct: 409 TIDGDQAVLRGEVTDTGIGIAPEHRENIFDRFSQADAAVSRRFGGTGLGLAISRRIIERM 468 Query: 789 MGKFYIFSTPAKGT--LIEIIFPLYD 812 G+ + S +G+ E+ PL D Sbjct: 469 DGRIGVDSVEGQGSTFWFEVRGPLAD 494 >gi|317152715|ref|YP_004120763.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316942966|gb|ADU62017.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 1228 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 99/366 (27%), Positives = 178/366 (48%), Gaps = 25/366 (6%) Query: 454 LCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE----QNTPSV 508 L I E + D I+I NR L N A GY E++LR+P+T + Q T + Sbjct: 713 LRRIFELSKDMISISDNRSARFLRINPAFMSTLGYSEEELLRQPYTALVHPDDVQMTADI 772 Query: 509 MNHYLT---EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 + L E+++ + R K + + L + + + D+++ K Sbjct: 773 IRDKLMAGDEVVNFENRY--------RCKSGEYIWLNWVARPMADKGLTYAIARDVTDRK 824 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + +L AK+ AE + KS FLA +SHE+RTPL I+G ++++ R + + Sbjct: 825 KYEAELIAAKETAESATRAKSQFLANMSHEVRTPLNGILGMLQLMQQTRL----DHEQDD 880 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y ++ + +++D+LDIS+IE+ K+ + EP +L E+++ L AN+ I Sbjct: 881 YVGNAIQASRRLTRLLSDILDISRIEAEKLIIMAEPFNLHESLNTVRDLFLPVANQSGID 940 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVILR 740 + IP +L D ++Q+ N++ NA+ FT SG + +TT + + ++ Sbjct: 941 FEFRVSPKIPTTLLGDAIRLQQVISNLVGNALKFTSSGTVTVEATTLSPLKPGSCRMLFS 1000 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 ++DTG G+ + L + +PF Q+ +S + +G GLGL + K +V G I S Sbjct: 1001 IKDTGCGIPDDRLGQLFQPFTQVDDSWNRQYQGAGLGLSITKRLVALMGGTLCIESRVGV 1060 Query: 801 GTLIEI 806 GT + + Sbjct: 1061 GTTVHL 1066 >gi|253689753|ref|YP_003018943.1| Hpt sensor hybrid histidine kinase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756331|gb|ACT14407.1| Hpt sensor hybrid histidine kinase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 931 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 87/238 (36%), Positives = 133/238 (55%), Gaps = 10/238 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + +K PL N +Y Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKT----PL-NTTQTDYLL 332 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS N +L+I+ND+LD SK+E+GK+ L P SL A+ + + L+ A+EK + + Sbjct: 333 TIERSANNLLNIINDVLDFSKLEAGKLVLEDIPFSLHNALDDVVMLLAHTAHEKGLELTL 392 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDT 744 S N++P + + D ++QI N+L NAI FT G I + + +V L V RDT Sbjct: 393 SIQNDVPEQFVGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLEVQIRDT 452 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G+ + + + F Q S R GTGLGL + + +V G S KG+ Sbjct: 453 GIGIAELQQSQLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGS 510 >gi|144898063|emb|CAM74927.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt [Magnetospirillum gryphiswaldense MSR-1] Length = 1117 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 131/242 (54%), Gaps = 8/242 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q ++ LS A+ A++ + KS FLA +SHEIRTP+ AIIG S + +PR Sbjct: 355 RQREDALSQARDEADQANQAKSAFLANMSHEIRTPMNAIIGLSGLALRTGL----DPRQR 410 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +Y I + +L I+ND+LD SKIE+G++ S+ + + + +L+ A EK + Sbjct: 411 DYLIKIQNASQTLLGIINDILDFSKIEAGRLEFEQIEFSITDVLDDVANLITRRAEEKGL 470 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILR 740 I + ++P +++ D + Q+ N+ +NAI FT G ++ + + ++ Sbjct: 471 EIVFATTGDLPQKVIGDPLRLAQVITNLCTNAIKFTHVGEVVVRVELQSISDGKACLLFS 530 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 VRDTG+G+T + + +PF Q S + GTGLGL + + MV+ G+ ++ S K Sbjct: 531 VRDTGIGLTEQQAARLFEPFSQADASTTRQFGGTGLGLSICRRMVELMEGRIWVDSEHGK 590 Query: 801 GT 802 G+ Sbjct: 591 GS 592 >gi|330507649|ref|YP_004384077.1| signal transduction histidine-protein kinase [Methanosaeta concilii GP-6] gi|328928457|gb|AEB68259.1| signal transduction histidine-protein kinase [Methanosaeta concilii GP-6] Length = 656 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 109/359 (30%), Positives = 178/359 (49%), Gaps = 31/359 (8%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +L++ D I ++++EG L + P IL P +F+ +N S+M L E+ Sbjct: 156 LLDSIPDSIFLLDKEGNFLD--------YRTPNSSILYAPAELFMGKNIHSIMPQDLVEL 207 Query: 517 LSLDL---RQT----LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569 ++ RQ+ + + L + E K RI L + + D++E K+ Sbjct: 208 TMNNIEMARQSGKMQVFEYQLPANGEIKHFEARI---NLCEGGDFLALVRDVTERKRSDE 264 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 L AK+ AE + KS+FLA +SHEIRTPL A+IG + ++ + P E NY Sbjct: 265 MLWKAKEEAEAAAKAKSEFLANMSHEIRTPLNAVIGLTGLLLDTDLTP-------EQRNY 317 Query: 630 ID---RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 ++ S + +L ++ND+LD SKI+ G M L P L + + L+ EK +++ Sbjct: 318 LEIVRNSSDSLLSVINDILDFSKIDGGMMELEHSPFDLRRCIESTMDLMVTRVAEKGLVL 377 Query: 687 RTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VRD 743 + + +P +L D ++Q+ N+LSNA+ FT G + + E LR V D Sbjct: 378 KVVLDDQLPTMLVGDASRLRQVLANLLSNAVKFTDKGFVEVSVRGNAIPEGFELRFDVLD 437 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TG+GM +L++ PF QI +S R GTGLGL ++K +V G+ + S P G+ Sbjct: 438 TGIGMPQDKLDRLFMPFSQIDSSITRRYGGTGLGLAISKRLVGMMGGRIWAKSNPGVGS 496 >gi|154253592|ref|YP_001414416.1| histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154157542|gb|ABS64759.1| histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 218 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 67/188 (35%), Positives = 108/188 (57%) Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++ Q FGPLG+ RY EY I +G +L +VND+LD+S+IE +NL + + +D Sbjct: 1 MMDKQLFGPLGDRRYAEYIVDIKGAGMHLLSLVNDILDLSRIELDGLNLSLQEIDIDGIC 60 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 + +++++ A E +I + P I D R +KQI +N+L+NA+ FTP+GG + + Sbjct: 61 NNCLAIIRGRAEESKIRLNFLAETPYPEIETDERRLKQILINLLNNAVKFTPAGGTVTLE 120 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + I+RVRDT +GMT+ E+E+A++PF EG GLGL L +++ Sbjct: 121 LQANPDGGAIIRVRDTSIGMTHEEIERALQPFWHADTGLDRSFEGAGLGLALVGKLLELM 180 Query: 789 MGKFYIFS 796 G +I S Sbjct: 181 HGNLHIQS 188 >gi|99078407|ref|YP_611665.1| PAS/PAC sensor hybrid histidine kinase [Ruegeria sp. TM1040] gi|99035545|gb|ABF62403.1| PAS/PAC sensor hybrid histidine kinase [Ruegeria sp. TM1040] Length = 756 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 106/407 (26%), Positives = 191/407 (46%), Gaps = 52/407 (12%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 ED R+ +K E +L I E +DG+ +I R+GI+ N S+L GY ++++ Sbjct: 229 EDAYMRLFDQKQEAR--RLAMIAEHANDGVMLIGRDGIVRWANDGFSRLTGYTFDELV-- 284 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE----KLLSLR-------II 544 QN ++N T+ +L + I G K E +L++ R I Sbjct: 285 ------GQNPGKILNSENTDPAALRV------IEAGREKGEPFRAELINRRKDGKEIWIE 332 Query: 545 IKKLPF------SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 ++P Y D++ K+ + +L A+ AE+ + K +FLA +SHE RT Sbjct: 333 TNQVPVFDDTGQIETYIAVERDVTATKEYERQLKEARLAAEEGARIKEEFLATMSHEFRT 392 Query: 599 PLTAIIGFSEVIK------NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 P+ +IG +++++ +QR Y + I S +L ++ND+LD+S + + Sbjct: 393 PMNGVIGMAQMLQATDLSEDQRL----------YTDTILGSSRALLALINDVLDLSHMNA 442 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNI 711 ++L L V + + L+ A+EK + + ++P + D R ++QI +N+ Sbjct: 443 AGVSLFNVDFDLHACVGDIVRLLSGQADEKHLELSVEIDPDVPVWVTGDDRRLRQILVNL 502 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 L NA+ FT SG I + ++V L+ V DTG+G+ +LEK + F Q N+ Sbjct: 503 LGNAVKFTTSGSIFIRLRGVVTGDQVALKIEVEDTGIGIPADKLEKIFERFSQADNAISR 562 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + G+GLGL +++ + A G + S +G ++ + P Sbjct: 563 KYGGSGLGLSISRGLAQAMGGDIDVTSVEGEGACFTLMLDMGVADCP 609 >gi|283850562|ref|ZP_06367850.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283574133|gb|EFC22105.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 1231 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 80/258 (31%), Positives = 139/258 (53%), Gaps = 15/258 (5%) Query: 567 EKNKLSHAKKIAEKE--SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 EK + +K A+ E S +KS+FLA +SHE+RTPL +++ + +++ G L +P + Sbjct: 534 EKARRDVERKAADLETASRYKSEFLANMSHELRTPLNSLLLLARNLRDNGSGRL-DPDEV 592 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E A I R+GN +L ++ND+LD+SK+E+GK++LH E V L + ++ A K I Sbjct: 593 EAAGIIYRNGNDLLMLINDILDLSKVEAGKLSLHLESVPLADVAGSIMADFGHVAEGKGI 652 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII-----------STTHT 732 + +P+ I D R ++QI N++SNA+ FT +GG ++ S+ Sbjct: 653 SLHHEIGEGLPQAIRTDRRRLEQILRNLVSNAMKFTETGGVVLRLHLADAADGRPSSRGA 712 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + + V V DTG+G+ + + + F Q+ + R GTGLGL + + + G+ Sbjct: 713 AGDMVAFSVIDTGIGIAADKHQAIFEAFQQVDGTSSRRYGGTGLGLSITRELARLLGGRV 772 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S P +G+ + P+ Sbjct: 773 TLASQPGRGSTFTFLVPI 790 >gi|183220873|ref|YP_001838869.1| putative sensory transduction histidine kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910970|ref|YP_001962525.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775646|gb|ABZ93947.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779295|gb|ABZ97593.1| Putative sensory transduction histidine kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 914 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 134/252 (53%), Gaps = 15/252 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+E + K +L AK++AE + KS+FLA +SHEIRTPL IIG+S+++ L Sbjct: 500 RDITESYETKLELKKAKELAENAYNAKSEFLANMSHEIRTPLNGIIGYSDLLAE----TL 555 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + EYA + +S + +L IVND+LD SK E+GK+ L P L + EAI ++ + Sbjct: 556 VDTSFNEYAQIVKQSAHTLLSIVNDILDFSKAEAGKLQLAEVPNDLKNLILEAIKIMDIQ 615 Query: 679 ANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A + IR +IP +L D ++Q+ LN++ NAI FT +G I T E Sbjct: 616 AIVHGLDIRLHIDESIPNVLMFDSNRLRQVMLNLIGNAIKFTETG---FIECRLTRLESA 672 Query: 738 I-------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 I + V+DTG+G+ +K F Q S + GTGLGL + + ++ Sbjct: 673 IKQEVKVRISVKDTGIGIAKENQKKIFDSFTQEDFSTTRKFGGTGLGLAICRQLLQLMKS 732 Query: 791 KFYIFSTPAKGT 802 + + S +G+ Sbjct: 733 ELKLKSEVGQGS 744 >gi|54294799|ref|YP_127214.1| transmission sensor LetS [Legionella pneumophila str. Lens] gi|53754631|emb|CAH16115.1| Legionella transmission sensor LetS [Legionella pneumophila str. Lens] Length = 910 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 135/245 (55%), Gaps = 9/245 (3%) Query: 563 EWKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E +EKN +LS KK E++S KS+F+A +SHEIRTP+ +IGF+ V+ + PL Sbjct: 275 ELLEEKNIELSLEKKKTEEKSRQKSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL--- 331 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 ++Y I S +L I+N +LD SKI++GK+NL P+ + + E +SL A++ Sbjct: 332 -QLDYVKTIKSSAQDLLSIINAILDFSKIDAGKLNLDCIPLDVRGCIDEVLSLASPNAHK 390 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---V 737 K I + N+P+ +L D +KQI N+++NA+ FT G +I + ++ + Sbjct: 391 KVIDLIPITDINVPKMVLGDPLRIKQIISNLVTNAVKFTDHGYVLIRTKIEQETDKDYTL 450 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + + DTG+G++ + K F Q S R G+GLGL + K + + G+ + S Sbjct: 451 LFAITDTGIGISPEDQTKLFTAFNQADTSITRRYGGSGLGLVICKKLCEEMHGRISLTSE 510 Query: 798 PAKGT 802 KG+ Sbjct: 511 INKGS 515 >gi|90421839|ref|YP_530209.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] gi|90103853|gb|ABD85890.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] Length = 757 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 77/253 (30%), Positives = 124/253 (49%), Gaps = 5/253 (1%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++ + + L+ A+ IA+ + KS FLA SHEIRTPL IIG S ++ + Sbjct: 208 RDVTARAETERALAEARDIADTANRAKSRFLAMASHEIRTPLNGIIGMSGLLLDTHL--- 264 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P YA + SG+ + ++ +LLD SKIE+GK++L P +L + + L+ Sbjct: 265 -TPEQATYARAVKTSGDALASLIEELLDYSKIEAGKIDLENRPFALSALIEDITELLAPR 323 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A + + I +P ++ D ++Q+ LN+ NAI FT +GG +I E+ Sbjct: 324 AQARHLEIAADVDERLPAEVIGDAARLRQVLLNLAGNAIKFTATGGVALIVEPGAMPGEI 383 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 VRDTG+G+ + + F Q GTGLGL ++ +V G+ + S Sbjct: 384 RFMVRDTGIGIAPEAQARIFREFEQADELIARNYGGTGLGLSISDRIVKRMGGQITLHSA 443 Query: 798 PAKGTLIEIIFPL 810 G+ E + PL Sbjct: 444 QGTGSTFEFVVPL 456 >gi|237726037|ref|ZP_04556518.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229435845|gb|EEO45922.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1408 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 131/251 (52%), Gaps = 10/251 (3%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 ++K +L K ++ + K F ++HE RTPLT I+G E + NP+ IE Sbjct: 875 KQKGQLIQMSKKVQELTVDKLAFFTNITHEFRTPLTLIVGPIERALKLSY----NPQVIE 930 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 ++++R+ +L +VN L+D K+ESGKM + P + + ++E + YA+E+ I Sbjct: 931 QLHFVERNSKYLLSLVNQLMDFRKVESGKMEIVRNPGNFAKLLNELLVPFDAYASERGIT 990 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---HTSNEEVILRVR 742 I F I+ D ++ ++ +N++ NA+ FTP GGQI I T E++ + +R Sbjct: 991 IERRFRLPSCEIMYDEDAMHKVIVNLIGNALKFTPKGGQITIYATPFRQEEQEKLFICIR 1050 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQ--IRGE-GTGLGLPLAKAMVDANMGKFYIFSTPA 799 DTG G+ E++K F Q N I G+ GTG+GL L K +V + G + + Sbjct: 1051 DTGPGLPEEEIDKVFNRFYQSQNKTHSSINGQSGTGIGLYLCKRIVQLHGGSICAKNNQS 1110 Query: 800 KGTLIEIIFPL 810 KG I+ PL Sbjct: 1111 KGCSFRILLPL 1121 >gi|119505800|ref|ZP_01627867.1| sensory transduction histidine kinase [marine gamma proteobacterium HTCC2080] gi|119458367|gb|EAW39475.1| sensory transduction histidine kinase [marine gamma proteobacterium HTCC2080] Length = 607 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 135/233 (57%), Gaps = 7/233 (3%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S K++FLA +SHEIRTP+TAI+GF++++ P + ++ + ++ + D++ Sbjct: 214 SVAKTNFLANMSHEIRTPMTAIVGFADLLAKGVKDP---EQQEQWRGQLTQNARYLQDLI 270 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700 ++LD+S +E+G+M+L FE ++L AV+ A+ +++ A+ K + + T + +P I+ D Sbjct: 271 GNVLDMSAVEAGEMSLKFESINLLSAVTAAVENLRVRADSKNVGLETVVSGALPSAIITD 330 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR--DTGVGMTNYELEKAMK 758 ++I +N+LSNAI +T G + + + IL V DTG+G+ + ++E Sbjct: 331 SLKFREIIVNLLSNAIKYTERGSIKVTLSAENRGAKAILSVEVLDTGIGIDSGQMENLFL 390 Query: 759 PFGQIPNSQQIRG-EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 PF ++ ++ G EGTGLGL L++ + A G + ST KG+ + P+ Sbjct: 391 PFSRVHDTHHRAGIEGTGLGLALSRQIAAALEGDIVVASTLGKGSKFTLTLPV 443 >gi|121997445|ref|YP_001002232.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1] gi|121588850|gb|ABM61430.1| Hpt sensor hybrid histidine kinase [Halorhodospira halophila SL1] Length = 790 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 83/281 (29%), Positives = 152/281 (54%), Gaps = 13/281 (4%) Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II+ +P++ ++ + + + ++ A+ AE+ + KS+FLA ++HEIRTP+ A Sbjct: 192 IILASIPWTLGWTYGLAMAANLRAQQES-ERARAEAERANRAKSEFLANMNHEIRTPMNA 250 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 ++G ++++ + + + +++ I S ++L I+ND+LDISKIESGK+ + Sbjct: 251 VLGRTQLLLDTDL----DAQQLDHLGKIHNSSKMLLGIINDILDISKIESGKLEIEPHRF 306 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPS 721 L E + + +L A+EK + + ++PR+L D + Q+ N+LSNAI FTP Sbjct: 307 DLREVIDQVDTLFSAAASEKGLDVTYDIQPDLPRMLIGDSLRLTQVLSNLLSNAIKFTPR 366 Query: 722 GGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 GG + ++ + V +VRD+G+GM +L++ +PF Q S + GTGL Sbjct: 367 GGTVELNLHEVGEADDDAAHVRFQVRDSGIGMDAEQLKRIFQPFEQADASTTRQYGGTGL 426 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGT--LIEIIFPLYDTSH 815 GL + + +V G+ + S P +G+ + P+ D H Sbjct: 427 GLEIGRRLVTNMGGRLEVTSRPGQGSRFFFTLRLPIDDPGH 467 >gi|46204558|ref|ZP_00049823.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 378 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 72/171 (42%), Positives = 102/171 (59%), Gaps = 10/171 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+SE ++ +L A+ AE+ K+ FLA VSHE+RTPL AIIGFSEV+ + G G Sbjct: 202 DVSEHRRHAQELDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSEVLSGE--GATG 259 Query: 620 NP--RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 P R EYA I SG +LD+VN LLDIS+I G L EPV ++ + L++L Sbjct: 260 LPPERAREYAGIIAHSGRHLLDVVNTLLDISRIRGGHFELQLEPVDVEGLIRSCCDLMRL 319 Query: 678 YANEKRILIRTSFANNIPR---ILADLRSVKQIALNILSNAIHFTPSGGQI 725 A I T A +P ++AD R+ +Q+ +N++SNA+ FTP GG++ Sbjct: 320 KAEASGI---TLVAAPVPAGCGLIADARACRQMLINLISNAVKFTPRGGRV 367 >gi|322832015|ref|YP_004212042.1| integral membrane sensor hybrid histidine kinase [Rahnella sp. Y9602] gi|321167216|gb|ADW72915.1| integral membrane sensor hybrid histidine kinase [Rahnella sp. Y9602] Length = 953 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 84/258 (32%), Positives = 132/258 (51%), Gaps = 7/258 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ Q P G Sbjct: 449 DVSARVKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTQGL-PQG 507 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S L+L I++D+LD SKIES ++ + + S E ++ Sbjct: 508 VDRLVTAMN---NSSALLLKIISDILDFSKIESEQLKIEPQEFSCREVITHIAGNYLPLV 564 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +KR+ + +N+P D ++Q+ NIL+NAI FT +G I+ T + Sbjct: 565 VKKRLGLYCFIEHNVPLSFNGDPVRLQQVISNILNNAIKFTDTG--CIVLNVRTCGNYLE 622 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +VRDTGVG+ E+ + PF Q+ Q +GTGLGL + + +++ G + S P Sbjct: 623 FQVRDTGVGIPEREITRLFDPFFQVGTGVQRHFQGTGLGLAICEKLINLMDGDIEVESEP 682 Query: 799 AKGTLIEIIFPLYDTSHP 816 G+ + PLY+ + P Sbjct: 683 GLGSSFTVRIPLYNATFP 700 >gi|307129983|ref|YP_003881999.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Dickeya dadantii 3937] gi|306527512|gb|ADM97442.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Dickeya dadantii 3937] Length = 951 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 83/262 (31%), Positives = 131/262 (50%), Gaps = 6/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 440 VLLDVSARVRMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLP 499 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 N + S L+L I++D+LD SKIES ++ + + E ++ +S Sbjct: 500 SDAN----RLVTAMQNSSALLLKIISDILDFSKIESEQLKIEPGEFAPREVINHIVSNYL 555 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +KR+++ N+P R+L D ++Q+ N+LSNAI FT +G I+ + Sbjct: 556 PLVVKKRLVLYCYIDPNVPFRLLGDAVRLQQVLSNLLSNAIKFTDTGC-IVFQVACCDDG 614 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++ ++RDTGVG+ + K PF Q Q +GTGLGL + + +V G I Sbjct: 615 YLVFKMRDTGVGIDTRAVMKLFDPFFQAGTGVQRHFQGTGLGLAICEKLVSLMDGDITIE 674 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ I PLY +P Sbjct: 675 SEPGLGSEFGIRIPLYRAHYPQ 696 >gi|118594848|ref|ZP_01552195.1| hypothetical protein MB2181_04230 [Methylophilales bacterium HTCC2181] gi|118440626|gb|EAV47253.1| hypothetical protein MB2181_04230 [Methylophilales bacterium HTCC2181] Length = 875 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 81/246 (32%), Positives = 130/246 (52%), Gaps = 8/246 (3%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + W + AK++AE + KS+FLA +SHEIRTP+ IIG S + + Sbjct: 121 VVAWFYDITAAHQAKQLAEDAAKMKSEFLANMSHEIRTPMNGIIGMSHLALKTDL----D 176 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 PR +Y I ++G +L I+ND+LD SKIE+GK+++ +DE +S +++ + Sbjct: 177 PRQRDYVKKIQQAGKHLLGIINDILDFSKIEAGKLSIEEITFDIDEMMSNIANMIGQKCS 236 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI- 738 EK + + F ++P +++ D + QI +N +NAI FT G II + ++E I Sbjct: 237 EKNLELIFHFPQDLPHKLIGDPLRLSQILINYGNNAIKFTEKGEVIISAEILERDDEGIF 296 Query: 739 --LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V DTG+G+T + K + F Q S + GTGLGL +AK + G+ + S Sbjct: 297 IKFNVSDTGIGLTKEQKSKLFQSFQQADTSTSRKFGGTGLGLAIAKQLAGLMGGEVGVES 356 Query: 797 TPAKGT 802 KG+ Sbjct: 357 EYGKGS 362 >gi|75674244|ref|YP_316665.1| histidine kinase [Nitrobacter winogradskyi Nb-255] gi|74419114|gb|ABA03313.1| histidine kinase [Nitrobacter winogradskyi Nb-255] Length = 838 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 130/260 (50%), Gaps = 4/260 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT HDI++ + + L E K DF+ VS+E+R+PLT IIGF+ ++ + Sbjct: 578 LTFHDITDSENVERALRERNDALEAADQMKVDFVHHVSYELRSPLTTIIGFAHLMNDPGT 637 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GPL + EY NYI S + +L + N++LD++ I++G M L PV + + ++ A + Sbjct: 638 GPL-TEKQAEYVNYITSSTDALLALTNNILDLATIDAGAMTLELGPVDVRKTIAAAAEGI 696 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 Q RI++ +I + D R + Q+ N+L+NA F+P I +S T + Sbjct: 697 QDRLTRDRIVLNVDVDPDIGDFIGDERRIIQVLYNLLANAAGFSPPDAVITVSARRTEH- 755 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V V D G G+ +KA F N + R G GLGL L ++ V+ + G+ + Sbjct: 756 SVRFAVMDEGPGIPPDVRDKAFDWFESYANGSRHR--GAGLGLSLVRSFVELHGGRVHFD 813 Query: 796 STPAKGTLIEIIFPLYDTSH 815 GT + FPL +H Sbjct: 814 PAIKSGTRVVCDFPLDRGAH 833 >gi|116623865|ref|YP_826021.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116227027|gb|ABJ85736.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 1358 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 83/276 (30%), Positives = 149/276 (53%), Gaps = 13/276 (4%) Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 R+ I +L + SE + +L AK AE + K+ FLA +SHE+RTPL Sbjct: 848 RVRILRLGAARLERQVSERTSELLERTGELQIAKDAAEAANRAKTIFLANMSHELRTPLN 907 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 AI+GFS +++ G + + + + I+RSG +L +V+++LD++KIE+G+ L P Sbjct: 908 AILGFSNLLRE---GDVSEWQRNDL-DIINRSGEHLLSLVDEVLDVAKIEAGRGVLEIAP 963 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTP 720 L V + + ++ A K + + + ++ +PR + AD ++Q+ +N++ NAI FTP Sbjct: 964 YDLAGMVRDVMDMMGARAQMKGLALLHADSSGLPRYVRADGPRLRQVLINLVGNAIKFTP 1023 Query: 721 SGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTG 775 SG + +++ + V DTG G+ + E+ +PF Q+ P + + +G+G Sbjct: 1024 SGSVTLRLDAGCVDDDGRFSLTFYVEDTGCGVAPEDHERIFEPFVQVGPAATK---KGSG 1080 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 LGL + + +V+ G + STP KG+ + P+Y Sbjct: 1081 LGLAITRQLVEMMGGTVSVESTPGKGSRFRVEVPVY 1116 >gi|223984863|ref|ZP_03634970.1| hypothetical protein HOLDEFILI_02269 [Holdemania filiformis DSM 12042] gi|223963156|gb|EEF67561.1| hypothetical protein HOLDEFILI_02269 [Holdemania filiformis DSM 12042] Length = 989 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 103/359 (28%), Positives = 178/359 (49%), Gaps = 32/359 (8%) Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP-------SVMNHYLTEILSLDLRQTLE 526 +LS N V LF +D +R P +FL P + +N L + + +Q Sbjct: 350 MLSEN--VRVLFNIEPDDAVRHPERLFLSCGMPEQDPAGRAFLNGQLNQRQRCEYQQ--- 404 Query: 527 KITLGSTKEEKLLSLRIIIKKLPF-SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 G+ E L I I +P + Y +H+ + + L+ A + +++ + + Sbjct: 405 ----GTANE---LQRWIEIYFIPVHADQYLAVLHETTPEHHMRQDLADALRQSQENNQAR 457 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA-NYIDRSGNLVLDIVNDL 644 + F + +SH+IRTP+ IIG + + + L P + + + I + +LD++N++ Sbjct: 458 TVFFSSMSHDIRTPMNGIIGMTTIAQAH----LNEPEKVAHCLDKISLASQHLLDLINEV 513 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR--ILIRTSFANNIPRILADLR 702 LD+S+IESGK++L EPV+L + +S+ + LV+ +KR + IR+S A + +L D Sbjct: 514 LDMSRIESGKISLKKEPVNLSQLISDVLILVKPDLTKKRQTLHIRSS-ALDYDTVLGDTL 572 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMK 758 +++I LN+LSNA+ +TP I I + + VI V DTG+GMT L + Sbjct: 573 HLQKILLNLLSNAVKYTPPEQDITIGLHEEPDGDDKIKVIFTVEDTGIGMTPEFLTRIFT 632 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 PF + +S+ + GTGLG+ + K +VD G + S G+ + PL P Sbjct: 633 PFERAQDSRISQISGTGLGMAITKNIVDMMSGTLQVESQLGVGSKFTVTLPLSTAQTPQ 691 >gi|224369669|ref|YP_002603833.1| two-component hybrid sensor and transmitter protein [Desulfobacterium autotrophicum HRM2] gi|223692386|gb|ACN15669.1| two-component hybrid sensor and transmitter protein [Desulfobacterium autotrophicum HRM2] Length = 617 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 90/255 (35%), Positives = 139/255 (54%), Gaps = 10/255 (3%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 +H + E Q N+LS AK+ AEK S K+ FLA +SHE RTPL AIIGFS I Sbjct: 266 LHTVLE--QRVNELSLAKEEAEKASRAKNVFLANMSHEFRTPLNAIIGFSSHIAQ---SA 320 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 +P ++ + I SGN +L ++N +L +SKIE+GK ++ +L + +++ ++ L Sbjct: 321 ALDPEERKHLSIISNSGNHLLTLINSVLAMSKIEAGKTEVNERTTNLQDLLADIHAMFSL 380 Query: 678 YANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE 735 A EK + ++P I+ D + QI +N+++NAI FT GG ++I+ T Sbjct: 381 KAAEKALSFDLICHPDLPAIVQVDDVKLWQILINLINNAIKFTARGGVKVIVEKNDTP-- 438 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 E++ ++RDTG GM E PF Q+ Q I EGTGLGL + ++ + G+ + Sbjct: 439 EILFKIRDTGPGMAKDEQAMIFDPFVQLATDQGI-NEGTGLGLAICRSYIHLMGGEVKVD 497 Query: 796 STPAKGTLIEIIFPL 810 S KG+ PL Sbjct: 498 SVRGKGSTFFFSIPL 512 >gi|281208514|gb|EFA82690.1| histidine kinase [Polysphondylium pallidum PN500] Length = 1105 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 104/350 (29%), Positives = 177/350 (50%), Gaps = 26/350 (7%) Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP----SVMNHYLTEILSL 519 G+ +G+++ N A+ + GY +D+ + L TP + L E+ + Sbjct: 433 GVMFSTLKGLVMDANDALLSIIGYSRQDLEQGKVDWMLI--TPPEYFEISARALQELKAK 490 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISEWKQEKNKLSHAKKIA 578 Q +EK K K + + I + S +T + D+S ++Q A++ A Sbjct: 491 RWCQPIEKAYFH--KNGKKVPILITAAMVDGSDEQCITFVFDLSRYRQ-------AEESA 541 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 K + KS F+A +SHE+RTP I+G ++++ + P N R + A I RS + ++ Sbjct: 542 IKATKLKSQFIANISHELRTPCHGILGMTQLLLDSGLTP--NQR--DSAETIKRSIDGLI 597 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK---RILIRTSFANNIP 695 +++ND+LD SKIE+GK+ L L V E ++L AN+K I I + P Sbjct: 598 NLINDILDFSKIEAGKLTLEIVEFELISIVEEVLNLQGELANKKGIDLIFIIGRQSPVPP 657 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYE 752 + D R ++Q+ +N++ NA+ FT SG ++ IST + S ++V LR V+DTG+G+ + Sbjct: 658 MLYGDSRFIRQVLINLVHNALKFTESGHVVLEISTEYESGDQVSLRFSVKDTGIGIPDSV 717 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 E+ +PF Q+ S + GTGLGL + + +V G S KG+ Sbjct: 718 SEQLFQPFSQVDGSSSRKYGGTGLGLSICRDLVGLMGGNISYESKVGKGS 767 >gi|218438826|ref|YP_002377155.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218171554|gb|ACK70287.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 1285 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 139/246 (56%), Gaps = 12/246 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L+ AK+ A+ + KS+FLA +SHE+RTPL AI+GF++++ R L + ++ EY Sbjct: 806 QLTKAKETADAANKAKSEFLANMSHELRTPLNAILGFTQLLA--RDSSLSDKQH-EYVGI 862 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQLYANEKRILI 686 I RSG +L ++ND+L++SKIE+G++ L HF+ L + E + QL A K + + Sbjct: 863 IGRSGEHLLSLLNDVLEMSKIEAGRITLNENHFDLYRLLNTLEE---MFQLKAQSKGLQL 919 Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILRVRDT 744 ++P+ I D ++QI +N++ N I FT G I+ + + S + V DT Sbjct: 920 IFDCHPDVPQYIKTDESKLRQILINLIGNGIKFTEVGSVILRVKLSLLSTMTIDFEVEDT 979 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ EL+ +PF Q + ++ + EGTGLGLP+++ V G + S KG++ Sbjct: 980 GLGIAPEELDTLFQPFIQTVSGRKSQ-EGTGLGLPISQKFVQLMGGNISVKSNLNKGSMF 1038 Query: 805 EIIFPL 810 P Sbjct: 1039 RFEIPF 1044 >gi|149276653|ref|ZP_01882796.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] gi|149232322|gb|EDM37698.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] Length = 828 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 130/237 (54%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L +IA++++ KS+FLA +SHEIRTP+ +IG + +++N R + ++ Sbjct: 301 QLEEKSRIADEQNKAKSEFLANMSHEIRTPMNGVIGMTSLLRNTRL----DEDQFDFVES 356 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I S + +L+I+N++LD SKIESGK+ L P L + V E L+ A EK + + Sbjct: 357 IRISADALLEIINEILDFSKIESGKLELEEHPFVLSKIVEETYDLLSFKAQEKDLDLLYI 416 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTG 745 ++P ++ D+ ++QI +N++ NAI FT G I + S E+ V+D+G Sbjct: 417 IDPDVPYEVIGDMTRLRQIIVNLVGNAIKFTDEGEILTSIKLLEKKGSTYELEFSVQDSG 476 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ ++ K F Q+ +S + GTGLGL ++ ++ G+ ++ S GT Sbjct: 477 IGIPQDKMHKLFNSFSQVDSSTTRKYGGTGLGLVISARLIQKMNGRIWVESEVNVGT 533 >gi|149182829|ref|ZP_01861290.1| phosphate regulon sensor protein [Bacillus sp. SG-1] gi|148849444|gb|EDL63633.1| phosphate regulon sensor protein [Bacillus sp. SG-1] Length = 576 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 104/365 (28%), Positives = 187/365 (51%), Gaps = 32/365 (8%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 K +I+ +L +++E G+ +I+ G + TN+A + F E I K + ++ Sbjct: 224 KSAQDIQQNRLTTLIENMGSGLLLIDHRGYAVLTNKAFKEFFSITAERITNKRYYEVIK- 282 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR---IIIKKLPFSSCYSLTMHD 560 P V N + EI + ++ +++ L T E K L II K + L HD Sbjct: 283 -FPEV-NKLVEEIFMTE-QKIRKQLLLPLTIERKHFELYGAPIIGTKEEWKGIV-LVFHD 338 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E K KL +K DF+A VSHE+RTP+T+I GFSE + + G + + Sbjct: 339 ITELK----KLEQMRK----------DFVANVSHELRTPITSIKGFSETLLD---GAMND 381 Query: 621 PRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +E + N I R + + ++ DLLD+SK+E L+ + E + E I++++ Sbjct: 382 KETLEMFLNIILRESDRLQSLITDLLDLSKMEKQGFQLNVHETDMKELLIEVITILEKKP 441 Query: 680 NEKRILIRTSFANNIPRILADLRS--VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 +K I + + +LA++ S +KQ+ +N++ NAI +TP+GG++ +S S+ + Sbjct: 442 EKKDIEL---VLHADEAVLAEVDSFRIKQVFINLIGNAITYTPAGGEVSVSLKQ-SDSVI 497 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 ++ VRD G+G+ E + + F ++ ++ GTGLGL + K +++A+ G + S Sbjct: 498 VIEVRDNGIGIEESEFPRIFERFYRVDKARSRDSGGTGLGLAIVKHLIEAHGGTIGVESK 557 Query: 798 PAKGT 802 +GT Sbjct: 558 VNEGT 562 >gi|83816795|ref|YP_444479.1| two-component system sensor protein [Salinibacter ruber DSM 13855] gi|83758189|gb|ABC46302.1| two-component system sensor protein [Salinibacter ruber DSM 13855] Length = 1111 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 86/273 (31%), Positives = 145/273 (53%), Gaps = 12/273 (4%) Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 S Y+ + D E++ E L AK+ AE+ + KS FLA +SHEIRTPLT+IIGF+EVI Sbjct: 842 STYAALVLDRIEYEGE---LVSAKEEAERLNRMKSAFLANMSHEIRTPLTSIIGFAEVIG 898 Query: 612 NQRFGPLGN----PRYI----EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 ++ L + P + ++A+ I+ SG+ +L+ ++ +L++S++E+G+M L P++ Sbjct: 899 DEATSLLEHSDSPPDAVTALDQFADLIEESGHRLLETLDTVLNLSRLEAGEMELDCSPLN 958 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 L + V+EA L + A + I ++ A D ++ N++SNA+ +T GG Sbjct: 959 LADEVAEATDLFEPQALTEGIDLQGETAEGPLWARVDEGGLRIALQNLISNALKYTEEGG 1018 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + + ++V L V DTGVGM + + +PF Q EGTGLGL + K Sbjct: 1019 TVRVRAGR-RGDDVALEVEDTGVGMDPDHVPELFEPFRQESEGTGRTYEGTGLGLAVTKQ 1077 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 ++ G + + +G+ + P D P Sbjct: 1078 AIEQMGGTIAVETAKGEGSCFTVRVPAADAPDP 1110 >gi|66813420|ref|XP_640889.1| histidine kinase [Dictyostelium discoideum AX4] gi|74855522|sp|Q54U87|DHKA_DICDI RecName: Full=Hybrid signal transduction histidine kinase A gi|60468777|gb|EAL66777.1| histidine kinase [Dictyostelium discoideum AX4] Length = 2150 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 90/276 (32%), Positives = 148/276 (53%), Gaps = 22/276 (7%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ D++ +++ +L K+ AE+ + KS F+A VSHE+RTPL+ +IG S+++ Sbjct: 1360 TLRDMTS-RKDMQRLILEKEAAEEANKAKSAFVATVSHEVRTPLSGVIGVSDLLLETNL- 1417 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + +Y I +S +L I+ND+LD SK+ES ++ + P S+ E I ++ Sbjct: 1418 ---SEEQRDYVQTIQKSSQALLTIINDILDYSKLESRQLKMETLPFSIIETCQAVIHMLS 1474 Query: 677 LYANEK-RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-------I 727 + AN+ IL+R N+PRI+ D ++Q+ LN+LSNAI FT G + I Sbjct: 1475 VAANDDVDILLRV--PPNVPRIIFGDAMRMRQVLLNLLSNAIKFTSRGHVLTDISVDDSI 1532 Query: 728 STTHTSNEEVI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 T+T EE+I + + DTG+G+ + +PF Q NS + GTGLGL + K + Sbjct: 1533 PPTNTE-EEIIHLCITIEDTGIGIPQSLFDSIFEPFSQADNSTTRKYGGTGLGLSITKRL 1591 Query: 785 VDANM-GKFYIFSTPAKGTLIEIIFP-LYDTSHPHD 818 ++ M G + S +G+ + I P L + P D Sbjct: 1592 IEEVMGGTIQVSSIVGQGSKFKCIIPFLLPNTSPSD 1627 >gi|58336427|ref|YP_193012.1| histidine kinase [Lactobacillus acidophilus NCFM] gi|58253744|gb|AAV41981.1| putative histidine kinase [Lactobacillus acidophilus NCFM] Length = 618 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 101/373 (27%), Positives = 180/373 (48%), Gaps = 41/373 (10%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E +L S+L SDG+ +R G + N V ED++ KP L Sbjct: 261 ERRRLDSVLSHMSDGVLATDRHGNVSVVNHMVLTFLNAKEEDVINKPIAEVLG------- 313 Query: 510 NHYLTEILSLDLRQTLEKITLG---STKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEW 564 L + S DL + ++I + T++E +L S +I + F S +HD++E Sbjct: 314 ---LKDTSSQDLISSQKEIVITLDEGTRDEMILHASFSLIKRVTGFVSGSVCVLHDVTE- 369 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGNPRY 623 Q+KN+ S + F++ VSHE+RTPLT++ + E + + P P++ Sbjct: 370 -QQKNENSQRQ------------FVSNVSHELRTPLTSLQAYIEALNEGAWKDPEIAPKF 416 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA---- 679 +E +G ++ ++NDLL +S+++ G + E V+L++ V+ ++ + Sbjct: 417 LEVTQ--QETGRMI-RMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDK 473 Query: 680 ---NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 ++K+ I+ N + D + Q+ NI++NAI ++P GG I + T N Sbjct: 474 NKDHKKKYTIKRELGNQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTQNQNH- 532 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 VIL + D G+G+ +L K F ++ ++ GTGLGL +AK +V+A+ G+ + S Sbjct: 533 VILSISDQGLGIPRKDLAKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADS 592 Query: 797 TPAKGTLIEIIFP 809 + KG+ I P Sbjct: 593 SEGKGSTFYISLP 605 >gi|254881198|ref|ZP_05253908.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|254833991|gb|EET14300.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] Length = 1408 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 131/251 (52%), Gaps = 10/251 (3%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 ++K +L K ++ + K F ++HE RTPLT I+G E + NP+ IE Sbjct: 875 KQKGQLIQMSKKVQELTVDKLAFFTNITHEFRTPLTLIVGPIERALKLSY----NPQVIE 930 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 ++++R+ +L +VN L+D K+ESGKM + P + + ++E + YA+E+ I Sbjct: 931 QLHFVERNSKYLLSLVNQLMDFRKVESGKMEIVRNPGNFAKLLNELLVPFDAYASERGIT 990 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---HTSNEEVILRVR 742 I F I+ D ++ ++ +N++ NA+ FTP GGQI I T E++ + +R Sbjct: 991 IERRFRLPSCEIMYDEDAMHKVIVNLIGNALKFTPKGGQITIYATPFRQEEQEKLFICIR 1050 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQ--IRGE-GTGLGLPLAKAMVDANMGKFYIFSTPA 799 DTG G+ E++K F Q N I G+ GTG+GL L K +V + G + + Sbjct: 1051 DTGPGLPEEEIDKVFNRFYQSQNKTHSSINGQSGTGIGLYLCKRIVQLHGGSICAKNNQS 1110 Query: 800 KGTLIEIIFPL 810 KG I+ PL Sbjct: 1111 KGCSFRILLPL 1121 >gi|229006923|ref|ZP_04164553.1| hypothetical protein bmyco0002_38240 [Bacillus mycoides Rock1-4] gi|228754323|gb|EEM03738.1| hypothetical protein bmyco0002_38240 [Bacillus mycoides Rock1-4] Length = 561 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 104/380 (27%), Positives = 185/380 (48%), Gaps = 50/380 (13%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTP 506 E++ +L +++E G+ +I+ G I NR+ ++F E+ L R + FL Sbjct: 214 EMQQDRLHTLIENMGSGMILIDSRGYISLVNRSYKEIFHVTDEEYLDRLYYEAFLH---- 269 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SC 553 EI+ L +E+I + K K + L + I++ F Sbjct: 270 -------AEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKG 317 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 318 IVLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD- 362 Query: 614 RFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 G + N ++ E + N I + + ++ DLLD+SKIE L+ V + E + E Sbjct: 363 --GAMENQQFCEHFLNIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVEMKELLGEIK 420 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +++ + +K I ++ ++ ++ D +KQI +N+++NAI +TP+GG + + Sbjct: 421 MVLENKSQDKEISLQVDVLRHVS-VIGDPSRLKQIFINLVNNAIVYTPAGGTVSVELLED 479 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 480 EHNAYI-KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTV 538 Query: 793 YIFSTPAKGTLIEIIFPLYD 812 + S +GT + P D Sbjct: 539 TVESEVGEGTTFTVALPKSD 558 >gi|256830393|ref|YP_003159121.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256579569|gb|ACU90705.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 902 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 79/259 (30%), Positives = 135/259 (52%), Gaps = 15/259 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++ K+ + L K AE + KS+FLA +SHEIRTP+ ++G ++++ Sbjct: 488 DLTSRKEAEEALLKLKDAAEAANQAKSEFLANMSHEIRTPINGVMGMLQLLET------- 540 Query: 620 NPRYIEYANYI---DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P E A+YI + N + ++ D+LD+S++E+GKM + P + + + L Sbjct: 541 TPLDAEQASYIHMAAEAANRLTRLLTDILDLSRVEAGKMEIREAPFHIQDIIDSVTGLFA 600 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 + A K +++ A ++P IL D ++Q+ N++ NA+ FT G ++ IS + Sbjct: 601 VTARNKGLILECRLAPDMPGILLGDEMRIRQVLFNLVGNALKFTERGRVEMDISALSAKD 660 Query: 735 EE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 E+ V L V DTG+G+ L + +PF Q+ NS +G GLGL + +V G Sbjct: 661 EDTCRVHLCVTDTGIGIAEDRLGEIFEPFRQVENSFTRNYQGAGLGLSIVHRLVALMAGT 720 Query: 792 FYIFSTPAKGTLIEIIFPL 810 I S P +GT + ++ PL Sbjct: 721 ISIESAPGEGTSVHVVLPL 739 >gi|163802963|ref|ZP_02196850.1| sensor histidine kinase/response regulator [Vibrio sp. AND4] gi|159173253|gb|EDP58081.1| sensor histidine kinase/response regulator [Vibrio sp. AND4] Length = 931 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 141/252 (55%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q + N + ++Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----MSNSQ-MDYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L+I+ND+LD SK+E+GK+ L P E++ E I+L A+EK + I Sbjct: 331 TIEKSANNLLNIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKSLEITL 390 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDT 744 IP+ ++ D ++QI N++ N+I FT G I + S + V L+ VRDT Sbjct: 391 KIDPKIPQGLVGDPLRIQQILTNLVGNSIKFTERGNIDISVEMRSQSGDSVELQFMVRDT 450 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTF 510 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 511 WFTLRLHSTEIP 522 >gi|302037237|ref|YP_003797559.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii] gi|300605301|emb|CBK41634.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii] Length = 1013 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 102/360 (28%), Positives = 172/360 (47%), Gaps = 19/360 (5%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 QL +IL+ + I + +REG L NR + F E IL K T +V Sbjct: 352 QLRAILDHSPALIFLKDREGRYLDVNRQFERAFNLSREAILGKTDTELFSPKQAAVFQ-- 409 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSL--TMHDISEWKQ 566 + L L+ ++ L + S I+ K P Y++ DI++ K+ Sbjct: 410 TNDRLVLEAKRPLRFEETADYHDGPRTS---IVFKFPLLDRDRMLYAVGGVATDITDRKR 466 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + L+ A+ A + + KS+FLA +SHEIRTP+ +IG + ++ P E Sbjct: 467 AEEALALARDQAMEAARLKSEFLATMSHEIRTPMNGVIGMTNLLLESAL----TPEQREC 522 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 A + SG+ +L I+ND+LD SKIE+G++ L + + + L+ A +K + + Sbjct: 523 AEVVRNSGDHLLMIINDILDFSKIEAGRLTLETIDFDFRGMIDDTLDLIAEQARQKGLDL 582 Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VR 742 ++P + D ++Q+ +N+L NAI FT G ++ ++ + V+LR V Sbjct: 583 VGLIDASVPSAVRGDPGRLRQVLINLLGNAIKFTDRGEVVLRMTVAQDAQSHVVLRGDVT 642 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G++ K + F Q+ S R GTGLGL + K + + G+ + S P KG+ Sbjct: 643 DTGIGISPEGRNKLFQTFSQVDASTTRRYGGTGLGLAICKRLTELMQGEIGMESAPGKGS 702 >gi|120603530|ref|YP_967930.1| signal transduction histidine kinase with CheB and CheR activity [Desulfovibrio vulgaris DP4] gi|120563759|gb|ABM29503.1| signal transduction histidine kinase with CheB and CheR activity [Desulfovibrio vulgaris DP4] Length = 1535 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 84/269 (31%), Positives = 134/269 (49%), Gaps = 13/269 (4%) Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 CY DI++ + A K AE+ + KS+FLA VSHE+RTPL +G ++++ Sbjct: 1125 CY-----DITDAVNALESMCEASKRAEEANRTKSEFLANVSHELRTPLNGALGMLQLLEL 1179 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 +P +Y RSG ++ +++D+LD+S+IE+GK+ + P + E V E Sbjct: 1180 SSL----SPEQRQYVTTAIRSGQNLVRLLSDILDLSRIEAGKLVIEAIPCDIKELVDEVF 1235 Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTT 730 S L A K I + T+ A P + D ++Q N++ NA+ FT GG ++ ST Sbjct: 1236 STFSLDATGKGITLETTIAPGTPTYVRTDPLRLRQTLFNLVGNAVKFTEKGGVRVEFSTA 1295 Query: 731 HTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + ++L VRDTG G+ +E +PF Q+ S R G GLGL + +++ Sbjct: 1296 SMRGDAIVLFCTVRDTGPGIPEDRIESIFQPFTQLDGSYTRRHSGLGLGLGIVCRLMELF 1355 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 G + S P GT + P+ T P Sbjct: 1356 GGSIEVESAPNMGTAMHFAIPVGKTRRPQ 1384 >gi|261416187|ref|YP_003249870.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372643|gb|ACX75388.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326964|gb|ADL26165.1| sensor histidine kinase/response regulator [Fibrobacter succinogenes subsp. succinogenes S85] Length = 1211 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 91/268 (33%), Positives = 150/268 (55%), Gaps = 20/268 (7%) Query: 561 ISEWKQEKNK----LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 I+E KQE K L A AEK ++ K+ FL+ +SH+IRTP+ AIIGF+ + N Sbjct: 674 IAEQKQELEKQQKLLEQALVQAEKANNAKTMFLSNMSHDIRTPMNAIIGFTNLALNN--- 730 Query: 617 PLGNPRYIEYANYIDR---SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 L +P ++ NY+++ S +L ++ND+LD+S+IESGK+ L +L E + + + Sbjct: 731 -LDDPVLVK--NYLNKTVVSSTHLLSLINDILDMSRIESGKIRLEEVNCNLSEIMHDLNT 787 Query: 674 LVQLYANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +V A+EK+ L +F ++ D + Q+ +N+LSNA+ FTP GG I + T Sbjct: 788 IVLGQASEKQQNLYMDTFNIENELVICDKLRLHQMLINLLSNAVKFTPVGGNIHVFVRQT 847 Query: 733 SNEEVI----LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 +++E V+D G+GM+ L+ +PF + S + +GTGLG+ + K +VD Sbjct: 848 ASDENTGTYEFHVKDDGIGMSPEFLKVLYQPFERERTSTISKTQGTGLGMSITKKIVDMM 907 Query: 789 MGKFYIFSTPAKGT--LIEIIFPLYDTS 814 G + S P +GT ++ + + DTS Sbjct: 908 GGSIDVVSAPNQGTEFIVHLKLKIQDTS 935 >gi|162452641|ref|YP_001615008.1| hybrid histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161163223|emb|CAN94528.1| Hybrid Histidine Kinase [Sorangium cellulosum 'So ce 56'] Length = 961 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 81/256 (31%), Positives = 133/256 (51%), Gaps = 9/256 (3%) Query: 565 KQEKNKL----SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ++E+ KL A+ AE+ S K DF+A +SHE+R+P+ AI+G++ +++ + P Sbjct: 536 EEERQKLLESERAARDEAERVSRVKDDFVATLSHELRSPINAILGWARILRGRAPEPPTL 595 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 R +E I+R+ L D+V++LLD+S+I SGK+ L +PV L + A+ +QL A Sbjct: 596 ARGLEV---IERNARLQADMVSELLDMSRIVSGKLRLDVQPVDLPSVIRSALEAIQLAAE 652 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K I + +S + D + Q+ N+LSNA+ FTP GG+I ++ + L Sbjct: 653 TKGIAVASSIDPEASSLRGDPARIHQVVWNLLSNAVKFTPPGGRIDVA-LRRAGAHAALS 711 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+G+ L + F Q S + G G+GL + K +V+ + G + S Sbjct: 712 VTDTGMGIAPQFLPHLFERFRQADASSTRKHGGLGIGLSIVKHLVELHGGTVEVASQGEH 771 Query: 801 -GTLIEIIFPLYDTSH 815 G + PL S Sbjct: 772 LGATFTVTLPLAGVSQ 787 >gi|119476961|ref|ZP_01617242.1| Multi-sensor Hybrid Histidine Kinase [marine gamma proteobacterium HTCC2143] gi|119449768|gb|EAW31005.1| Multi-sensor Hybrid Histidine Kinase [marine gamma proteobacterium HTCC2143] Length = 895 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 83/261 (31%), Positives = 138/261 (52%), Gaps = 11/261 (4%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M +S+ + K A K+A S+ K DFLA++SHE+RTPLT ++GFS ++ + Sbjct: 268 AMDALSKKNRALEKTQQALKLA---STAKDDFLAKMSHELRTPLTTVVGFSRLLNQSKM- 323 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 N + +EY++ I + L+LD +N++LD SK++S +++ L EA+ +++ Sbjct: 324 ---NSKQVEYSDNITVAAELLLDTINNMLDFSKLQSSAVSIENIKFDLREAMEGLVAMHA 380 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSN 734 A + + NIPR +L D +KQI N+LSNA+ FT G ++ +S N Sbjct: 381 YQAESTGLDLILIIDRNIPRLLLGDPTRIKQIVNNLLSNAVKFTKQGEVVLRVSLMKGEN 440 Query: 735 EE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++ + + V D+G+GM + +PF Q ++ R GTGLGL + K + + G Sbjct: 441 DDGSLSIEVIDSGIGMDEKSQARLFQPFTQADDTITRRFGGTGLGLVICKQLAELMGGDI 500 Query: 793 YIFSTPAKGTLIEIIFPLYDT 813 I S GT + + PL T Sbjct: 501 VINSDLGVGTCMTVTLPLLAT 521 >gi|299148913|ref|ZP_07041975.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298513674|gb|EFI37561.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 657 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 91/264 (34%), Positives = 136/264 (51%), Gaps = 16/264 (6%) Query: 549 PFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 PF L + HDI + Q +L AK+ AE KS FLA +SHEIRTPL AI+GFS Sbjct: 267 PFEGNRVLALIHDIGDRIQRSQELIEAKRRAEDADKMKSVFLANMSHEIRTPLNAIVGFS 326 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 E+I +EY I R+ NL+L ++ND+LD+S+IESGK +HF+ V + Sbjct: 327 EIIAVTE----SEEEKMEYLEIIQRNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGL 382 Query: 668 VSEA--ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 V E + +++ +N + +IR D V Q+ N LSNAI T G I Sbjct: 383 VEEVEKVHQLKMKSNVELKVIRPEGEYWTS---TDRNRVMQVLFNFLSNAIKNTEKGS-I 438 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + H + + L V DTG G++ +L + F ++ + Q GTGLGL + K++V Sbjct: 439 TLGLKHEGS-WLKLYVSDTGCGISKEKLPQIFTRFEKLNDFVQ----GTGLGLSICKSIV 493 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + G+ + S +G+ + P Sbjct: 494 ERLGGRIEVTSELGQGSTFALYLP 517 >gi|319640208|ref|ZP_07994934.1| sensor protein [Bacteroides sp. 3_1_40A] gi|317388195|gb|EFV69048.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 1403 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 131/251 (52%), Gaps = 10/251 (3%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 ++K +L K ++ + K F ++HE RTPLT I+G E + NP+ IE Sbjct: 870 KQKGQLIQMSKKVQELTVDKLAFFTNITHEFRTPLTLIVGPIERALKLSY----NPQVIE 925 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 ++++R+ +L +VN L+D K+ESGKM + P + + ++E + YA+E+ I Sbjct: 926 QLHFVERNSKYLLSLVNQLMDFRKVESGKMEIVRNPGNFTKLLNELLVPFDAYASERGIT 985 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---HTSNEEVILRVR 742 I F I+ D ++ ++ +N++ NA+ FTP GGQI I T E++ + +R Sbjct: 986 IERRFRLPSCEIMYDEDAMHKVIVNLIGNALKFTPKGGQITIYATPFRQEEQEKLFICIR 1045 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQ--IRGE-GTGLGLPLAKAMVDANMGKFYIFSTPA 799 DTG G+ E++K F Q N I G+ GTG+GL L K +V + G + + Sbjct: 1046 DTGPGLPEEEIDKVFNRFYQSQNKTHSSINGQSGTGIGLYLCKRIVQLHGGSICAKNNQS 1105 Query: 800 KGTLIEIIFPL 810 KG I+ PL Sbjct: 1106 KGCSFRILLPL 1116 >gi|116753699|ref|YP_842817.1| multi-sensor hybrid histidine kinase [Methanosaeta thermophila PT] gi|116665150|gb|ABK14177.1| multi-sensor hybrid histidine kinase [Methanosaeta thermophila PT] Length = 1692 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 121/219 (55%), Gaps = 8/219 (3%) Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHEIRTPL AIIG S ++ P Y + I SGN +L+++ D+LD+ Sbjct: 1103 FLANMSHEIRTPLNAIIGMSGLLLRTNV----TPEQRSYVSAIQSSGNALLEMLADILDL 1158 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706 S+IE GK+ L S+ E V I ++ + A+EK+I + ++P +L D ++Q Sbjct: 1159 SRIEEGKLELDSSTFSILECVETCIDILSVKASEKQIELAYLIDEDVPELVLGDATRLRQ 1218 Query: 707 IALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 + +N+L NAI FT G ++I E+ VRDTG+G+ ++++ F Q+ Sbjct: 1219 VLVNLLENAIKFTERGEVFLRVICQYMDEDLSELHFFVRDTGIGIPPEKMDRLFHTFSQV 1278 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +S R GTGLGL ++K +V+ G+ + S P G+ Sbjct: 1279 DSSITRRYGGTGLGLAISKHLVEMMGGRIWAESIPGAGS 1317 >gi|283851408|ref|ZP_06368689.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573146|gb|EFC21125.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 967 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 75/249 (30%), Positives = 132/249 (53%), Gaps = 10/249 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E ++ + L AK+ AE + KS+FLA +SHEIRTP+ I+G + + + Sbjct: 575 DMTERRRGEEALLQAKQEAEAANQAKSEFLANMSHEIRTPMNGIMGMIHLARLKS----A 630 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +P ++Y + D+S +L IVND+LD+SK+E+GK+ L P +L A+ + + A Sbjct: 631 DPTILQYLDLADKSALHLLGIVNDVLDLSKMEAGKIRLAAAPFALRREFESAVEPLLVAA 690 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHTS 733 EK ++ A+++P ++ D ++Q+ N++ NA+ FT G + Sbjct: 691 GEKGLVFEHGVADDVPDHVIGDAGRLRQVLTNLVGNALKFTGKGRIEVRVALAAGAAEPG 750 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ VRDTG+G+ L + + F Q +S GTGLGL ++K +V+ G+ Sbjct: 751 TRRLLFTVRDTGIGIPAKRLSRIFESFEQAHSSAHALYGGTGLGLTISKRLVELMGGEII 810 Query: 794 IFSTPAKGT 802 S +G+ Sbjct: 811 AESREGQGS 819 >gi|311232728|gb|ADP85582.1| signal transduction histidine kinase with CheB and CheR activity [Desulfovibrio vulgaris RCH1] Length = 1535 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 84/269 (31%), Positives = 134/269 (49%), Gaps = 13/269 (4%) Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 CY DI++ + A K AE+ + KS+FLA VSHE+RTPL +G ++++ Sbjct: 1125 CY-----DITDAVNALESMCEASKRAEEANRTKSEFLANVSHELRTPLNGALGMLQLLEL 1179 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 +P +Y RSG ++ +++D+LD+S+IE+GK+ + P + E V E Sbjct: 1180 SSL----SPEQRQYVTTAIRSGQNLVRLLSDILDLSRIEAGKLVIEAIPCDIRELVDEVF 1235 Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTT 730 S L A K I + T+ A P + D ++Q N++ NA+ FT GG ++ ST Sbjct: 1236 STFSLDATGKGITLETTIAPGTPTYVRTDPLRLRQTLFNLVGNAVKFTEKGGVRVEFSTA 1295 Query: 731 HTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + ++L VRDTG G+ +E +PF Q+ S R G GLGL + +++ Sbjct: 1296 SMRGDAIVLFCTVRDTGPGIPEDRIESIFQPFTQLDGSYTRRHSGLGLGLGIVCRLMELF 1355 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 G + S P GT + P+ T P Sbjct: 1356 GGSIEVESAPDMGTAMHFAIPVGKTRRPQ 1384 >gi|225568541|ref|ZP_03777566.1| hypothetical protein CLOHYLEM_04618 [Clostridium hylemonae DSM 15053] gi|225162769|gb|EEG75388.1| hypothetical protein CLOHYLEM_04618 [Clostridium hylemonae DSM 15053] Length = 885 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 89/259 (34%), Positives = 135/259 (52%), Gaps = 13/259 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D +E + L A AE ++ KS+FL+R+SHEIRTPL A+IG + + + Sbjct: 344 DRTEEVCSRQALQEAMLAAENANAAKSEFLSRMSHEIRTPLNAVIGMTTIAA----ASVS 399 Query: 620 NPRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 +P +E I S +L ++ND+LD+SKIES KM L EP + E V+ +S V Sbjct: 400 DPARVEDCLTKITFSSRHLLMLINDVLDMSKIESSKMALQNEPFDIFEIVNGFVSTVYAQ 459 Query: 679 ANEKRILIRTS---FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI--IISTTHTS 733 A K I+ + F + I LR + QI +N+ SNA+ FTP GG I +S Sbjct: 460 AKSKDIVFEETMEGFGKDTVFIGDSLR-LNQILMNLSSNAVKFTPPGGSIHLDVSRYKKG 518 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 N+ ++R ++DTG+GMT + + +PF Q S R GTGLG+ + + ++ G+ Sbjct: 519 NQADVIRFVLKDTGIGMTKEAVGRIFQPFEQADASIAKRYGGTGLGMSITRNLITLMGGQ 578 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + S P GT + P Sbjct: 579 IQVESEPGLGTAFIVDLPF 597 >gi|90023024|ref|YP_528851.1| Signal transduction histidine kinase-like protein [Saccharophagus degradans 2-40] gi|89952624|gb|ABD82639.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans 2-40] Length = 761 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 84/259 (32%), Positives = 143/259 (55%), Gaps = 7/259 (2%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 +SL H++ + + L A ++A+ +S K++FLA +SHE+RTPL +IIGFS V + Sbjct: 502 HSLIKHEV---RVKTLALEEALQVAKDANSVKTNFLACMSHELRTPLNSIIGFS-VRCLK 557 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 P + + I I+R+G +L ++ND+LD++K+E+GKM + P+ + + E ++ Sbjct: 558 ILSPSHDQKLITAITVIERNGQHLLGLINDVLDLAKVEAGKMTITKAPIDIAATMDEVVT 617 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +Q ++K I I+ + ILAD + KQI +N+ +NAI+FT G I T+ Sbjct: 618 TLQPLVDDKPIEIKVK-TPPLNTILADQQRFKQIFINLGANAINFTREGRVQIDYALETT 676 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + LR VRDTG+G+ + K + F Q+ Q G+GLGL L V + G+ Sbjct: 677 KGKQALRINVRDTGIGIAKEHVAKVFQRFEQVGEQFQPGSLGSGLGLALVHEFVTLHGGR 736 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + S +G++ + P+ Sbjct: 737 IKVTSEVGRGSVFSVWLPI 755 >gi|317486683|ref|ZP_07945500.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] gi|316922066|gb|EFV43335.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] Length = 630 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 89/257 (34%), Positives = 135/257 (52%), Gaps = 13/257 (5%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP-RYIEYAN 628 +++ K+ AE+ + KS FL+R+SH+IRTP++AIIG + + K G+P R E + Sbjct: 231 QINRKKEQAEEANRAKSVFLSRMSHDIRTPMSAIIGLTAIAKKN----AGDPERLNECID 286 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I + L +VND+LD+SKIESGKM L EP L + + A K I+ T Sbjct: 287 KIALASQFQLSLVNDILDVSKIESGKMQLASEPFDLAGIIDDVTLFTSSSATAKGIVFET 346 Query: 689 SFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIII---STTHTSNEEVI-LRVRD 743 S I R+ + D +KQI +N+LSNA+ F G++ + S T +E + L V D Sbjct: 347 SVDPRIGRMYVGDPMRLKQILMNLLSNALKFVDENGKVTLRVESLRRTGRQEAVRLIVSD 406 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 G+GM+N ++ PF Q ++ R G+GLGL + + G + S KGT Sbjct: 407 NGIGMSNAFQKRMFLPFEQDAAPRRKR-SGSGLGLAIIGNLTALMGGSIAVDSELGKGTR 465 Query: 804 IEIIFPL--YDTSHPHD 818 + PL +T+ HD Sbjct: 466 FTVDIPLERTETAEKHD 482 >gi|300313022|ref|YP_003777114.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] gi|300075807|gb|ADJ65206.1| two component sensor histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 556 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 137/241 (56%), Gaps = 6/241 (2%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L +++ A + + KS FL+ +SHE RTPL ++G+S+ ++ + LG +YA I Sbjct: 317 LVRSRREALQANQAKSRFLSNMSHEFRTPLNGVLGYSDALREE----LGESPLAQYAVAI 372 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SGN +LD+VN +L+++++E ++ +H +P ++ E V +AI+ A K + + Sbjct: 373 HDSGNRLLDLVNAILEVTELEDRRVAVHLDPANIRELVGQAIARHYPQAQAKGLPLECRI 432 Query: 691 ANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 ++P+IL D R ++++ N++SNA+ +T G++++ + +++ +R++DTG+G+ Sbjct: 433 GEDVPQILVCDERKIQRVLDNLISNAVRYTDH-GRVMVEVERSGPQQLTMRIKDTGIGIA 491 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + F Q +S + EG GLGL +A+ +V G+ + S +G+ P Sbjct: 492 ASQQNDIFEKFTQADDSPRRSQEGAGLGLTIAQRLVMLMGGQLVLQSEQHQGSTFSFTLP 551 Query: 810 L 810 L Sbjct: 552 L 552 >gi|254476816|ref|ZP_05090202.1| sensor histidine kinase/response regulator [Ruegeria sp. R11] gi|214031059|gb|EEB71894.1| sensor histidine kinase/response regulator [Ruegeria sp. R11] Length = 778 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 110/389 (28%), Positives = 191/389 (49%), Gaps = 43/389 (11%) Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 +D K+E +L ++A DG A + +G ++S N A +LF Sbjct: 65 LDLSTANEKVERAEQRLWDSIQAIQDGFAFFDSDGKLISANAAYLELFDG---------- 114 Query: 498 TVFLEQNTPSVMNHYLTEILSL------------DLRQTLEKITLGSTKEEKLLS----- 540 LE+ P V L +IL+ D R + + L T E ++ Sbjct: 115 ---LEEVEPGVSYVRLLQILTDEGLINTGERDPDDWRAEMTERWLHPTPEPVVVRMWDDR 171 Query: 541 -LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 LR++ ++ S+ + DI+ Q + +L A++ AE + KS FLA +SHEIRTP Sbjct: 172 YLRLVDQRGNSGDMVSMAL-DITASVQYEEELEAARERAEAANRAKSAFLANMSHEIRTP 230 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 + ++G +E++ + + YAN I SG +L I+ND+LD SKIE+ K+ LH Sbjct: 231 MNGVVGMAELLSDTNL----SEEQRLYANTIKNSGEALLVIINDVLDYSKIEAQKLILHP 286 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHF 718 EP L+ +V E + L+Q A EK + + + +P + D ++Q+ N++ NA+ F Sbjct: 287 EPFDLERSVHEVLMLLQPTAREKGLNLILDYDLFLPTSFVGDPGRIRQVLTNLVGNAVKF 346 Query: 719 TPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 T + G + + T S+ E + + + DTG+G+ +++ F Q+ + Q + EG Sbjct: 347 T-TEGHVNLQITGISSPEDEFCSIHVAIEDTGIGIPAEKVQHIFGEFNQVDDEQNRKFEG 405 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TGLGL + K +++ G+ ++ S KG+ Sbjct: 406 TGLGLAITKRLIELMGGEIWVESEVGKGS 434 >gi|89093662|ref|ZP_01166609.1| histidine kinase response regulator hybrid protein [Oceanospirillum sp. MED92] gi|89082058|gb|EAR61283.1| histidine kinase response regulator hybrid protein [Oceanospirillum sp. MED92] Length = 670 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 82/247 (33%), Positives = 133/247 (53%), Gaps = 9/247 (3%) Query: 569 NKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 ++L KKI + ES+ +KS F++ VSHEIRTP+ ++G +++ PL N + + Y Sbjct: 156 SRLELRKKIKQLESANQYKSIFVSNVSHEIRTPMNGVMGLIDLLLET---PL-NDKQLRY 211 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 A I RSG+ +L ++ND+LD+SK+E+GK+ + +L E V + A EK++ + Sbjct: 212 AQAIKRSGDSLLRVINDVLDLSKVEAGKLTIEKAEFNLGEVVDDLTECFSPLATEKKLEL 271 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRD 743 RT R + D +KQI N+LSNAI FT G + I ++++ L+ V D Sbjct: 272 RTDIQLKSDRFIGDHYRLKQILNNLLSNAIKFTDKGWTALRIKVVSETDDQATLKFSVSD 331 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G++ + + K F Q + G+GLGL + K ++ G + S P KG+ Sbjct: 332 TGLGLSEKQQSQLFKRFQQANETITREFGGSGLGLSICKQLLALMDGDIGVKSEPGKGST 391 Query: 804 IEIIFPL 810 PL Sbjct: 392 FWFTLPL 398 >gi|295087116|emb|CBK68639.1| PAS domain S-box [Bacteroides xylanisolvens XB1A] Length = 637 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 91/264 (34%), Positives = 136/264 (51%), Gaps = 16/264 (6%) Query: 549 PFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 PF L + HDI + Q +L AK+ AE KS FLA +SHEIRTPL AI+GFS Sbjct: 247 PFEGNRVLALIHDIGDRIQRSQELIEAKRRAEDADKMKSVFLANMSHEIRTPLNAIVGFS 306 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 E+I +EY I R+ NL+L ++ND+LD+S+IESGK +HF+ V + Sbjct: 307 EIIAVTE----SEEEKMEYLEIIQRNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGL 362 Query: 668 VSEA--ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 V E + +++ +N + +IR D V Q+ N LSNAI T G I Sbjct: 363 VEEVEKVHQLKMKSNVELKVIRPEGEYWTS---TDRNRVMQVLFNFLSNAIKNTEKGS-I 418 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + H + + L V DTG G++ +L + F ++ + Q GTGLGL + K++V Sbjct: 419 TLGLKHEGS-WLKLYVSDTGCGISKEKLPQIFTRFEKLNDFVQ----GTGLGLSICKSIV 473 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + G+ + S +G+ + P Sbjct: 474 ERLGGRIEVTSELGQGSTFALYLP 497 >gi|150003574|ref|YP_001298318.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149931998|gb|ABR38696.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1408 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 131/251 (52%), Gaps = 10/251 (3%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 ++K +L K ++ + K F ++HE RTPLT I+G E + NP+ IE Sbjct: 875 KQKGQLIQMSKKVQELTVDKLAFFTNITHEFRTPLTLIVGPIERALKLSY----NPQVIE 930 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 ++++R+ +L +VN L+D K+ESGKM + P + + ++E + YA+E+ I Sbjct: 931 QLHFVERNSKYLLSLVNQLMDFRKVESGKMEIVRNPGNFAKLLNELLVPFDAYASERGIT 990 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---HTSNEEVILRVR 742 I F I+ D ++ ++ +N++ NA+ FTP GGQI I T E++ + +R Sbjct: 991 IERRFRLPSCEIMYDEDAMHKVIVNLIGNALKFTPKGGQITIYATPFRQEEQEKLFICIR 1050 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQ--IRGE-GTGLGLPLAKAMVDANMGKFYIFSTPA 799 DTG G+ E++K F Q N I G+ GTG+GL L K +V + G + + Sbjct: 1051 DTGPGLPEEEIDKVFNRFYQSQNKTHSSINGQSGTGIGLYLCKRIVQLHGGSICAKNNQS 1110 Query: 800 KGTLIEIIFPL 810 KG I+ PL Sbjct: 1111 KGCSFRILLPL 1121 >gi|317055666|ref|YP_004104133.1| multi-sensor hybrid histidine kinase [Ruminococcus albus 7] gi|315447935|gb|ADU21499.1| multi-sensor hybrid histidine kinase [Ruminococcus albus 7] Length = 1205 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 83/258 (32%), Positives = 137/258 (53%), Gaps = 10/258 (3%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 F Y L D +E +L IA+K + KS FLA +SHEIRTP+ A++G E+ Sbjct: 308 FGRLYRLI--DDTEHYNYMEQLREQSLIADKANRAKSAFLANMSHEIRTPINAVLGMDEM 365 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 I + G + I YA I +G +L ++ND+LD SK+E G+M L L A++ Sbjct: 366 ILRES----GERQIIGYAEDIRNAGRTLLSLINDILDFSKVEQGRMELIPTQYELGSAIN 421 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIII 727 + +++++ A++K + + IP +L D VKQ ALN+L+NA+ +T G + Sbjct: 422 DLVNMIRPRADKKGLRFDVKVDSGIPHMLVGDEIRVKQCALNLLTNAVKYTEKGSVHFEV 481 Query: 728 STTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 T ++ + LR V DTG+G+ ++K PF +I + EGTGLG+ + + ++ Sbjct: 482 GYEKTGDKSIKLRFTVSDTGMGIKQENMDKLFSPFSRIEEGKNRSIEGTGLGMSITRQLL 541 Query: 786 DANMGKFYIFSTPAKGTL 803 + + I S KG++ Sbjct: 542 ELMGSELEINSIYGKGSV 559 >gi|301163596|emb|CBW23147.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis 638R] Length = 1022 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 87/255 (34%), Positives = 137/255 (53%), Gaps = 12/255 (4%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + DI++ ++ +L AK +AE+ KS FLA +SHEIRTPL AI+GFS+++ N Sbjct: 621 IRVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSE- 679 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV-SEAISL 674 G+ EY I+ + L+L ++ND+LD+SK+ESG + L +E L E S A S+ Sbjct: 680 -EQGDKE--EYMQIINTNNELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSM 736 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 Q N K L+ + ++ R+ D V Q+ N ++NAI +TP G I + Sbjct: 737 KQRVTNPKVQLVAVN-PYSVCRVRLDKNRVAQVVTNYVTNAIKYTPQG--TIEMGYEVVD 793 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + L VRDTG+G+ + K F ++ Q GTGLGL + KA+ ++ G Sbjct: 794 AGIRLYVRDTGIGIPEEKKRKVFHRFEKLDEFAQ----GTGLGLSICKAITESMGGSVGF 849 Query: 795 FSTPAKGTLIEIIFP 809 S ++G+L + P Sbjct: 850 ESEYSRGSLFWAVLP 864 >gi|242278589|ref|YP_002990718.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242121483|gb|ACS79179.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 832 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 96/364 (26%), Positives = 175/364 (48%), Gaps = 39/364 (10%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 I++ +DG+ +++ G I TN A+ +LFG ++ K F + ++ Sbjct: 261 IMDNLADGLLVVDINGKISVTNPALGELFGVTENELRGKDIRTFFPEEMTALFE------ 314 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576 L E ++ S I + + +H + E L Sbjct: 315 -------------LVKGCEHEVYSSEIELTGRKTGKAVATPIHKMDEGDTPNICLGAVIL 361 Query: 577 IA----EKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQ---RFGPLGNP--RYIEY 626 + EKE + K+DF++ VSHE+RTP+T+I+GF+++IK + P+ N + E Sbjct: 362 VRDITYEKEVDNLKTDFISTVSHELRTPMTSILGFAKIIKKKLEKSVFPVCNAPDKKTER 421 Query: 627 A--------NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 A I G + +++ND+LDI+K+ESGK++ P+ + E + ++ Sbjct: 422 AINQVKDNIGIIVSEGQRLTELINDVLDIAKMESGKIDWKNVPIDISEVIETSVQTTTPL 481 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + + + NIP I D V Q+ +N++SNA+ FT SG I T + +E++ Sbjct: 482 WKPQDLQMVVDVEENIPTIHGDRDRVMQVLVNLISNAVKFTASGS--ITCTARSHADEIM 539 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V DTG G++ + +K + F Q ++ + +GTGLGLP+ K +VD + G+ ++ S Sbjct: 540 VSVSDTGSGISPEDQKKIFQRFKQAGDTLTGKPKGTGLGLPICKQIVDHHKGRIWVDSKL 599 Query: 799 AKGT 802 +G+ Sbjct: 600 GEGS 603 >gi|193213739|ref|YP_001994938.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] gi|193087216|gb|ACF12491.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] Length = 787 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 110/404 (27%), Positives = 182/404 (45%), Gaps = 47/404 (11%) Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-------ILSTNRAVSKLFGY 487 P ++ I+ +K + L S++ +D + I G ++ NRA + GY Sbjct: 114 PLSIEKAIHHQKSAERLRLLESVVVNGNDAVLIAEHTGKSSGGYPKVIYINRAFTLATGY 173 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 +E+++ KP V + T ++ L KI E + + I KK Sbjct: 174 ELEEVIEKPSDVLFGEKTS---------------QRELVKIRKAMKGNESVRTELICYKK 218 Query: 548 -----------LPFSSCYSLTMH------DISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 +P + H DI+ K+ + L AK +AE+ K FLA Sbjct: 219 DGAVFWNDVNIVPVKDENGIYTHWVSVHRDITHRKKTEEALVKAKILAEESMRSKERFLA 278 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SHEIRTP+ A+IG + ++ PL + + E + I +S +L I+ND+LD SKI Sbjct: 279 NMSHEIRTPMNAVIGMTNLLLRT---PLSSEQ-AECVDIIKQSSENLLVIINDILDFSKI 334 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIAL 709 ESGK+ P SL + + IS L A+EK + + S + P ++ D + QI + Sbjct: 335 ESGKITFESIPFSLHSLLKKTISTFSLKASEKDLSLSLSLDASCPDSVMGDSVRLNQILV 394 Query: 710 NILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 N++ NA+ FT G ++ + ++ V+ + DTG+G+ + E + F Q N Sbjct: 395 NLVGNALKFTEKGKIVVKVQLDRRTPTHSVVLFSISDTGIGIDAEKQETIFESFTQAGND 454 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + GTGLGL + K +V+ GK ++ S G PL Sbjct: 455 TTRKFGGTGLGLAITKKLVELQGGKIWVKSELGVGATFSFALPL 498 >gi|94263963|ref|ZP_01287765.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455635|gb|EAT05817.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 914 Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 131/239 (54%), Gaps = 11/239 (4%) Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHEIRTP+ AI+GFS + P PR +Y ID+S + +L I+ND+LD Sbjct: 290 FLANMSHEIRTPMNAIVGFSRLALQDELPP--KPR--DYLEKIDQSAHSLLKIINDILDF 345 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQ 706 SKIE+GK+ + P L E + ++ + EK + + + + P ++ D + Q Sbjct: 346 SKIEAGKLTMEEVPFDLSEVLDNVGQMMAMRTEEKGLELLFALGPEVPPNLIGDPLRLSQ 405 Query: 707 IALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQI 763 + +N+ +NA+ FT G ++ +S + + V L+ ++D+G+GM ++ + +PF Q Sbjct: 406 VLINLTNNAVKFTEQGEIVLQVSCPEPTADPVELQFAIKDSGIGMNEEQIARIFQPFTQA 465 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDTSHPHDCI 820 +S GTGLGL + + +V++ G+ + STP KG+ IFP + P C+ Sbjct: 466 DDSTTRSYGGTGLGLSIVRRLVESMGGEVEVSSTPGKGSTFSFNAIFPRDSQASPR-CL 523 >gi|293370768|ref|ZP_06617314.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] gi|292634128|gb|EFF52671.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] Length = 635 Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 91/264 (34%), Positives = 136/264 (51%), Gaps = 16/264 (6%) Query: 549 PFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 PF L + HDI + Q +L AK+ AE KS FLA +SHEIRTPL AI+GFS Sbjct: 245 PFEGNRVLALIHDIGDRIQRSQELIEAKRRAEDADKMKSVFLANMSHEIRTPLNAIVGFS 304 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 E+I +EY I R+ NL+L ++ND+LD+S+IESGK +HF+ V + Sbjct: 305 EIIAVTE----SEEEKMEYLEIIQRNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGL 360 Query: 668 VSEA--ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 V E + +++ +N + +IR D V Q+ N LSNAI T G I Sbjct: 361 VEEVEKVHQLKMKSNVELKVIRPEGEYWTS---TDRNRVMQVLFNFLSNAIKNTEKGS-I 416 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + H + + L V DTG G++ +L + F ++ + Q GTGLGL + K++V Sbjct: 417 TLGLKHEGS-WLKLYVSDTGCGISKEKLPQIFTRFEKLNDFVQ----GTGLGLSICKSIV 471 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + G+ + S +G+ + P Sbjct: 472 ERLGGRIEVTSELGQGSTFALYLP 495 >gi|285018865|ref|YP_003376576.1| two-component system sensor-response regulator hybrid protein [Xanthomonas albilineans GPE PC73] gi|283474083|emb|CBA16584.1| putative two-component system sensor-response regulator hybrid protein [Xanthomonas albilineans] Length = 1619 Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 140/257 (54%), Gaps = 12/257 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E Q + +L AK +A++ S KS FLA +SHEIRTP+ A++G ++++ Sbjct: 874 DITEQLQAEQELRQAKALADEASQAKSSFLANMSHEIRTPMNAVLGMLQLLRRTAL---- 929 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + R +Y ++G +L ++ND+LD SKIE+GK+ L P S++E + + +S+V L Sbjct: 930 DARQADYVGKAQKAGTSLLSLLNDILDYSKIEAGKLQLDLHPFSMEELLRD-LSVV-LSG 987 Query: 680 NEKR--ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNE 735 N +R + I +IP L D ++Q+ +N+ NA+ FT G ++ + H + Sbjct: 988 NHQRPEVEIVYRLGRDIPDCLIGDSLRLQQVLINLAGNALKFTEHGHVLLNVDLLHRQPQ 1047 Query: 736 EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 V LR V D+G+G++ + ++ F Q S R G+GLGL +++ +V G+ Sbjct: 1048 AVTLRVTVEDSGIGISAEQQQRIFHSFTQAEASTSRRFGGSGLGLVISRRLVGMMGGQLQ 1107 Query: 794 IFSTPAKGTLIEIIFPL 810 + S +G+ PL Sbjct: 1108 LHSVLGEGSRFWFDLPL 1124 >gi|260460489|ref|ZP_05808740.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum WSM2075] gi|259033594|gb|EEW34854.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 762 Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 81/267 (30%), Positives = 142/267 (53%), Gaps = 9/267 (3%) Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 ++ + DI+ K+ ++ L A++ AE S KS FLA VSHEIRTP+ I+G + ++ Sbjct: 221 AASHRAIARDITARKRAESSLITARERAEYASQAKSRFLATVSHEIRTPMNGIMGMARLL 280 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + +P Y I S + +L ++ DLLD SKIE+G+ + +P+S+ E Sbjct: 281 ADTSL----SPEQQTYVGAISTSASALLALIEDLLDYSKIEAGRFDPEPQPISVREIADN 336 Query: 671 AISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-IS 728 I L+ A K I + ++P+++ AD V+Q+ LN++ NAI FT GG ++ ++ Sbjct: 337 IIELLAARAFAKDIGLGCHVEPDVPQMITADPGRVRQVLLNLIGNAIKFTDGGGVLVSVA 396 Query: 729 TTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 T+ + + + DTG G+ + ++E+ + F Q + G GLGL ++K +V A Sbjct: 397 RARTATTDRICFTIADTGPGLRDEDMERIFEEFEQADGTSTRTHGGAGLGLAISKRLVAA 456 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTS 814 G + S +G+ E +F + T+ Sbjct: 457 MGGTISVSSRLGQGS--EFVFEIPATA 481 >gi|332528024|ref|ZP_08404058.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332112598|gb|EGJ12391.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 630 Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 76/247 (30%), Positives = 136/247 (55%), Gaps = 6/247 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D++E + + L A+++AE+ S KS+FL+R+ HEIRTPL AI+GF++++ Sbjct: 238 VLWDVTEQRLAEAAL-EAQRVAERASRAKSEFLSRLGHEIRTPLNAIVGFAQMLLRGAVV 296 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL A+ D +G + ++ DL D+S IE+G + L V L + + E + Sbjct: 297 PLALEHRQAVAHIAD-AGRHLERLIADLTDLSLIEAGTVRLESSVVDLGQVIDEVLHEAH 355 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A +R+ +R++ +LAD ++Q+ N++SNAI + G+++++ Sbjct: 356 ASAAMRRVQLRSALPAERLLVLADGTRLRQVLANLVSNAIKYNRLHGEVVVAVRRDGAGW 415 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG-EGTGLGLPLAKAMVDANMGKFYIF 795 I VRDTG+GM+ +L +PF ++ ++ G GTG+GL L + +V+A G + Sbjct: 416 CIA-VRDTGLGMSPAQLAALFEPFNRL--GREASGIPGTGIGLVLTRELVEAMGGSLEVS 472 Query: 796 STPAKGT 802 S P +G+ Sbjct: 473 SEPGRGS 479 >gi|312959787|ref|ZP_07774303.1| two-component system, NarL family, sensor histidine kinase EvgS [Pseudomonas fluorescens WH6] gi|311285953|gb|EFQ64518.1| two-component system, NarL family, sensor histidine kinase EvgS [Pseudomonas fluorescens WH6] Length = 1215 Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 87/255 (34%), Positives = 141/255 (55%), Gaps = 13/255 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DISE +Q ++L AK+ A++ + KS FLA +SHEIRTP A+IG E+ +K G L Sbjct: 697 DISERRQLFDELRAAKERADEANRAKSTFLATMSHEIRTPKNAVIGMLELTLKRADQGHL 756 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P IE A S +L+++ D+LDI++IESG+++L E V+L E ++ + + Sbjct: 757 DRP-AIEVAY---NSAKDLLELIGDILDIARIESGRLSLAPERVNLREVIASVVRVFDGL 812 Query: 679 ANEKRILIRTSFANNI--PRILADLRSVKQIALNILSNAIHFTPSGGQI-----IISTTH 731 A +K + + F ++ +L D KQ+ N++SNAI FT G Q+ ++ T Sbjct: 813 ARQKTLSLLLEFKPDLDDTEVLIDPLRFKQVLSNLVSNAIKFTERG-QVKIKVEVLPTDL 871 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 E+ L V DTG+G++ + + +PF Q NS Q+ G GLGL + +++ G+ Sbjct: 872 PQQIEMKLVVEDTGIGISREDQMRLFEPFAQADNSGQLARSGAGLGLVICRSLCAMMGGQ 931 Query: 792 FYIFSTPAKGTLIEI 806 + S P GT + + Sbjct: 932 LSLSSVPMVGTQVHV 946 >gi|71907078|ref|YP_284665.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Dechloromonas aromatica RCB] gi|71846699|gb|AAZ46195.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 1131 Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 71/252 (28%), Positives = 136/252 (53%), Gaps = 9/252 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L + +I ++ L AK +AE+ + KS ++ +SHE+RTPL +I+G+++++ Sbjct: 651 LLIQEIESHQRTDAALQQAKVVAEQANQAKSRYITAISHELRTPLNSILGYAQILAADED 710 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P P ++ + I +SG+ +L ++ LDI++IE GK+ L + + E + + + + Sbjct: 711 IP---PNRLQAVSVIRKSGDHLLSVIEGTLDIARIEGGKLTLDVKAMDFPELMQQIVGMF 767 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 +L A K + +P ++ AD + ++QI +N++ NA+ FT GG + Sbjct: 768 ELQARNKGLSFDYQPVGELPAVVRADEKRLRQILINVIGNAVKFTVRGG--VSFKVECRR 825 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + I +RDTG G+ +LE+ +PF + ++ G+G+GL +A+ + D G+ + Sbjct: 826 DMAIFEIRDTGPGIPAADLERIFEPFTR---GSTVQAGGSGVGLTIARMLTDLMGGEMQV 882 Query: 795 FSTPAKGTLIEI 806 ST +GTL I Sbjct: 883 SSTAGEGTLFRI 894 >gi|329850148|ref|ZP_08264994.1| mmoS [Asticcacaulis biprosthecum C19] gi|328842059|gb|EGF91629.1| mmoS [Asticcacaulis biprosthecum C19] Length = 1140 Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 83/247 (33%), Positives = 132/247 (53%), Gaps = 8/247 (3%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A+ A ++ KSDFLA +SHEIRTP+ ++ +E++ + P R+ A I +S Sbjct: 246 ARDEAVAATAAKSDFLATMSHEIRTPMNGVMVMAELLAAESL-PAKARRH---AQTIAKS 301 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +L ++ND+LD SKIE+GK+ + V + + + I+L Q A EK + + S + Sbjct: 302 GRSLLAVINDILDFSKIEAGKLEVETTEVDILDLCDDIITLFQAKAREKGLELAVSAHPD 361 Query: 694 IPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 PRI+ AD + Q+ N++SNA+ FT G + ++ L VRDTG+G+ + Sbjct: 362 APRIVPADPVRLGQVLSNLISNALKFTDQ-GLVAVAIEPGPGRSWKLSVRDTGIGIAADK 420 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 L K F Q + R GTGLGL +A+ +V+A G+ + S +GT ++ P D Sbjct: 421 LPKIFAAFSQEDQTTTRRFGGTGLGLTIARRLVEAMGGEVSVTSQQGRGTRFLVVMPAGD 480 Query: 813 TSHPHDC 819 H C Sbjct: 481 --HGETC 485 >gi|265764264|ref|ZP_06092832.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263256872|gb|EEZ28218.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] Length = 1022 Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 87/255 (34%), Positives = 137/255 (53%), Gaps = 12/255 (4%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + DI++ ++ +L AK +AE+ KS FLA +SHEIRTPL AI+GFS+++ N Sbjct: 621 IRVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSE- 679 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV-SEAISL 674 G+ EY I+ + L+L ++ND+LD+SK+ESG + L +E L E S A S+ Sbjct: 680 -EQGDKE--EYMQIINTNNELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSM 736 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 Q N K L+ + ++ R+ D V Q+ N ++NAI +TP G I + Sbjct: 737 KQRVTNPKVQLVAVN-PYSVCRVRLDKNRVAQVVTNYVTNAIKYTPQG--TIEMGYEVVD 793 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + L VRDTG+G+ + K F ++ Q GTGLGL + KA+ ++ G Sbjct: 794 AGIRLYVRDTGIGIPEEKKRKVFHRFEKLDEFAQ----GTGLGLSICKAITESMGGSVGF 849 Query: 795 FSTPAKGTLIEIIFP 809 S ++G+L + P Sbjct: 850 ESEYSRGSLFWAVLP 864 >gi|225387688|ref|ZP_03757452.1| hypothetical protein CLOSTASPAR_01458 [Clostridium asparagiforme DSM 15981] gi|225046210|gb|EEG56456.1| hypothetical protein CLOSTASPAR_01458 [Clostridium asparagiforme DSM 15981] Length = 810 Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 90/270 (33%), Positives = 142/270 (52%), Gaps = 27/270 (10%) Query: 560 DISEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV--- 609 D++E ++ + KL A +AE+ + KSDFL+R+SHEIRTP+ AIIG + + Sbjct: 263 DVTELREMQRKLIAQTEALKDALSVAEQANRAKSDFLSRMSHEIRTPMNAIIGMTTIAAA 322 Query: 610 -IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 I++++ R + I S ++ ++ND+LD+SKI++GKM + EP +L+ V Sbjct: 323 YIEDRK-------RVEDCLEKIGYSSKHLMTLINDVLDMSKIDAGKMQISHEPFNLETIV 375 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIII 727 S++ A +K ++ + I +L D + QI LN+LSNA+ FTP GG + + Sbjct: 376 ESITSIIYPQAEDKGLIFNVPLVDLINTVLIGDGLRLNQILLNLLSNAVKFTPKGGTVRL 435 Query: 728 STTHTSNEEVILR----VRDTGVGMTNYELEKAMKPFGQ-IPNSQQIRGEGTGLGLPLAK 782 +R V DTG+GM+ L PF Q N+ Q G GTGLG+P+ K Sbjct: 436 RIRQMWRRAGRVRLSFAVSDTGIGMSQDFLSHIFDPFEQERVNAGQTYG-GTGLGMPITK 494 Query: 783 AMVDANMGKFYIFSTPAKGT--LIEIIFPL 810 + G + S P +GT +E+ F L Sbjct: 495 NLATLMGGTISVKSKPDQGTTFTVELDFDL 524 >gi|242238486|ref|YP_002986667.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Dickeya dadantii Ech703] gi|242130543|gb|ACS84845.1| histidine kinase [Dickeya dadantii Ech703] Length = 934 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 86/265 (32%), Positives = 135/265 (50%), Gaps = 6/265 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 422 VLLDVSARVRMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLRTKSLS 481 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 N R +E + S +L+L I++D+LD SKIES ++ + + E ++ IS Sbjct: 482 RDAN-RLVEA---MQNSSSLLLKIISDILDFSKIESEQLKIEPGRFAPREVINHIISNYL 537 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +KR+ + ++P IL D ++Q+ N+LSNAI FT +G I++ + Sbjct: 538 PLVVKKRLTLYCYIEPSVPVSILGDAVRLQQVLSNLLSNAIKFTDTGC-IVLQVQRRHDG 596 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +VRDTGVG+ + K PF Q Q +GTGLGL + + +V G I Sbjct: 597 YLAFQVRDTGVGIEPRSVMKLFDPFYQAGTGVQRHFQGTGLGLAICEKLVSLMDGDISIE 656 Query: 796 STPAKGTLIEIIFPLYDTSHPHDCI 820 S P G+L + PLY +P + Sbjct: 657 SEPGLGSLFGVRIPLYQAQYPQTLV 681 >gi|239617406|ref|YP_002940728.1| histidine kinase [Kosmotoga olearia TBF 19.5.1] gi|239506237|gb|ACR79724.1| histidine kinase [Kosmotoga olearia TBF 19.5.1] Length = 538 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 128/226 (56%), Gaps = 3/226 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHE+RTPL +IIGF +I G + N + + + S +L+++ND+ Sbjct: 300 KSEFLATMSHELRTPLNSIIGFVSMILQGISGDI-NEEQRKQLSMVHSSSIHLLNLINDI 358 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LDISKIE+GKM+ + ++ + +SE + V ++K + + T + IP + +D V Sbjct: 359 LDISKIEAGKMSFSKDRFNIKDVISEVVQNVSPLISKKEVKLITEIPDEIPEVYSDKTRV 418 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 QI LN++SNAI FT G+I I +++ + V DTG G+ ++E + F QI Sbjct: 419 FQILLNLVSNAIKFTEK-GEIRIK-CEVDGDKLKISVSDTGKGIKEEDMETLFEAFRQIS 476 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 S + R +G GLGL L+K +V G+ ++ S KG+ PL Sbjct: 477 GSARRRYQGAGLGLYLSKKLVTLLGGEIWVESEYGKGSTFTFTLPL 522 >gi|300113840|ref|YP_003760415.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nitrosococcus watsonii C-113] gi|299539777|gb|ADJ28094.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nitrosococcus watsonii C-113] Length = 1500 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 85/265 (32%), Positives = 134/265 (50%), Gaps = 10/265 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 TM + E ++++ L A+ A + + K +F A VSHE+RTPL +IG E++ N Sbjct: 247 TMMTVLEAREQE--LKKARDAALESARIKGEFAASVSHELRTPLNGVIGMLELLSNTELT 304 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P N R EY SG +LD++ ++LD S+IESGK L L E + + I L+ Sbjct: 305 P--NQR--EYVQVACGSGETLLDLIGNILDFSRIESGKFKLDSVDFYLQETLDDVIGLLA 360 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 A K + I A N+P + D ++QI +N++ NA+ FT G I + Sbjct: 361 AQAQRKDLEIGYVVAENVPLFMRGDATRIRQILINLMGNAVKFTEQGEVSIEVRLLEKKA 420 Query: 735 EEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++++L VRDTG+G+ L + + F Q +S + GTGLGL + + +VD G Sbjct: 421 KKLVLHFEVRDTGIGIPLEFLARVFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGGDL 480 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHPH 817 + + KG+L PL + P Sbjct: 481 GVENNLDKGSLFWFTVPLEEMIMPQ 505 >gi|228993315|ref|ZP_04153231.1| hypothetical protein bpmyx0001_40470 [Bacillus pseudomycoides DSM 12442] gi|228766383|gb|EEM15026.1| hypothetical protein bpmyx0001_40470 [Bacillus pseudomycoides DSM 12442] Length = 558 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 104/380 (27%), Positives = 185/380 (48%), Gaps = 50/380 (13%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTP 506 E++ +L +++E G+ +I+ G I NR+ ++F E+ L R + FL Sbjct: 211 EMQQDRLHTLIENMGSGMILIDSRGYISLVNRSYKEIFHVTDEEYLDRLYYEAFLH---- 266 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SC 553 EI+ L +E+I + K K + L + I++ F Sbjct: 267 -------AEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKG 314 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 315 IVLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD- 359 Query: 614 RFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 G + N ++ E + N I + + ++ DLLD+SKIE L+ V + E + E Sbjct: 360 --GAMENQQFCEHFLNIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVEMKELLEEIK 417 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +++ + +K I ++ ++ ++ D +KQI +N+++NAI +TP+GG + + Sbjct: 418 MVLENKSQDKEISLQVDVLRHVS-VIGDPSRLKQIFINLVNNAIVYTPAGGTVSVELLED 476 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 477 EHNAYI-KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTV 535 Query: 793 YIFSTPAKGTLIEIIFPLYD 812 + S +GT + P D Sbjct: 536 TVESEVGEGTTFTVALPKSD 555 >gi|254415604|ref|ZP_05029363.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196177554|gb|EDX72559.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1156 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 132/252 (52%), Gaps = 14/252 (5%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 N+L A+ A + KS FLA +SHEIRTP+ ++G ++ NP+ + Y Sbjct: 406 NELVEARDAALATARLKSKFLANMSHEIRTPINGVLGMMRLLLQTDL----NPQQLNYTR 461 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+ +L ++ND+LD+SK+E+GKM L SLD + I ++ + A K + + Sbjct: 462 TIESCAKHLLTVINDILDVSKLEAGKMLLEQIDFSLDSCLDSVIDVLAVQAETKGLELAI 521 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII---IS----TTHTSNEEVILR 740 +N+PR L +D ++QI LN++ NAI FT +G ++ +S T S V LR Sbjct: 522 LVESNVPRQLQSDPGRLRQILLNLVGNAIKFTDAGEVVVRVAVSRHQPTDTLSQSSVTLR 581 Query: 741 --VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG+G++ + K + F Q+ S R GTGLGL + + +V+ GK + S Sbjct: 582 FSVTDTGIGISAADQSKLFQAFSQVEASTTRRYGGTGLGLVICQQLVELLGGKIGVESKV 641 Query: 799 AKGTLIEIIFPL 810 +G+ P+ Sbjct: 642 GQGSTFWFTVPV 653 >gi|186681478|ref|YP_001864674.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186463930|gb|ACC79731.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 683 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 128/241 (53%), Gaps = 4/241 (1%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A AE + +S+FLA +SHE+ TPLT +IG S + G L R +Y I Sbjct: 437 LRDALLAAEAANRLRSEFLATISHELLTPLTYVIGMSSTLLRWPLGELSQ-RQRDYLQTI 495 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG +L+++ND+LD+S+IE+GK L+ SL +A+ ++ A ++I + Sbjct: 496 HDSGEHLLEMINDILDLSQIEAGKTALNISEFSLVNVAEKALESLRNKATSEQINLNLDL 555 Query: 691 ANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + R AD V QI N+L+NAI FTP G + + ++ I +V DTG+G+ Sbjct: 556 QIDPSRDRFTADAERVAQILSNLLTNAIKFTPESGNVTLRL-WVEDDTAIFQVEDTGIGI 614 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L + F Q+ + R EGTGLGL L K +V+ + G+ + ST + G++ + Sbjct: 615 REEQLPLLFEKFQQLDTPYRRRYEGTGLGLALTKQLVELHRGRIEVESTISIGSIFTVWI 674 Query: 809 P 809 P Sbjct: 675 P 675 >gi|258591510|emb|CBE67811.1| putative Sensor protein [NC10 bacterium 'Dutch sediment'] Length = 1049 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 127/238 (53%), Gaps = 11/238 (4%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + AK +AE S K +FLA++SHEIRTPL AIIG +E+ + E+ + Sbjct: 506 MQQAKSVAEAASRAKGEFLAKMSHEIRTPLNAIIGMTELTLDTAL----TTEQREFLQVV 561 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 S +L ++ND+LD+S+IE+G+M + L E V ++ + A +K + + Sbjct: 562 QSSSEALLTVINDILDLSRIEAGQMAIEETAFHLREVVEGVAEVLSIRAQKKGLELTCYV 621 Query: 691 ANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDT 744 +P R+L D ++Q+ +N++ NAI FT G++ I T E V + V DT Sbjct: 622 DPALPSRVLGDPMRLRQVLVNLVGNAIKFTER-GEVTIQVERTQVEAPGRIGVHISVADT 680 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G+ ++ + PF Q + R G+GLGL ++KA+++ G+ ++ S KG+ Sbjct: 681 GIGIPTHQQARIFDPFAQADATTARRFGGSGLGLSISKALMELMGGRIWVESEVGKGS 738 Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 33/50 (66%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 +++ E+++ + LEA ++GI I +REG I+ TN A + L GY ++++ Sbjct: 174 RKQAEVQLHLQTTALEAAANGIVITDREGTIVWTNPAATPLTGYTAQELI 223 >gi|253567089|ref|ZP_04844540.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251944213|gb|EES84722.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] Length = 1022 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 88/259 (33%), Positives = 139/259 (53%), Gaps = 20/259 (7%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + DI++ ++ +L AK +AE+ KS FLA +SHEIRTPL AI+GFS+++ N Sbjct: 621 IRVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSE- 679 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV-SEAISL 674 G+ EY I+ + L+L ++ND+LD+SK+ESG + L +E L E S A S+ Sbjct: 680 -EQGDKE--EYMQIINTNNELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSM 736 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG----GQIIISTT 730 Q N K L+ + ++ R+ D V Q+ N ++NAI +TP G G ++ T Sbjct: 737 KQRVTNPKVQLVAVN-PYSVCRVRLDKNRVAQVVTNYVTNAIKYTPQGTIEMGYEVVDTG 795 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + L VRDTG+G+ + K F ++ Q GTGLGL + KA+ ++ G Sbjct: 796 ------IRLYVRDTGIGIPEEKKRKVFHRFEKLDEFAQ----GTGLGLSICKAITESMGG 845 Query: 791 KFYIFSTPAKGTLIEIIFP 809 S ++G+L + P Sbjct: 846 SVGFESEYSRGSLFWAVLP 864 >gi|228999368|ref|ZP_04158947.1| hypothetical protein bmyco0003_39230 [Bacillus mycoides Rock3-17] gi|228760313|gb|EEM09280.1| hypothetical protein bmyco0003_39230 [Bacillus mycoides Rock3-17] Length = 558 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 104/380 (27%), Positives = 185/380 (48%), Gaps = 50/380 (13%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTP 506 E++ +L +++E G+ +I+ G I NR+ ++F E+ L R + FL Sbjct: 211 EMQQDRLHTLIENMGSGMILIDSRGYISLVNRSYKEIFHVTDEEYLDRLYYEAFLH---- 266 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SC 553 EI+ L +E+I + K K + L + I++ F Sbjct: 267 -------AEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKG 314 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 315 IVLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD- 359 Query: 614 RFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 G + N ++ E + N I + + ++ DLLD+SKIE L+ V + E + E Sbjct: 360 --GAMENQQFCEHFLNIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVEMKELLGEIK 417 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +++ + +K I ++ ++ ++ D +KQI +N+++NAI +TP+GG + + Sbjct: 418 MVLENKSQDKEISLQVDVLRHVS-VIGDPSRLKQIFINLVNNAIVYTPAGGTVSVELLED 476 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 477 EHNAYI-KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTV 535 Query: 793 YIFSTPAKGTLIEIIFPLYD 812 + S +GT + P D Sbjct: 536 TVESEVGEGTTFTVALPKSD 555 >gi|53713918|ref|YP_099910.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52216783|dbj|BAD49376.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 1022 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 87/255 (34%), Positives = 137/255 (53%), Gaps = 12/255 (4%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + DI++ ++ +L AK +AE+ KS FLA +SHEIRTPL AI+GFS+++ N Sbjct: 621 IRVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSE- 679 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV-SEAISL 674 G+ EY I+ + L+L ++ND+LD+SK+ESG + L +E L E S A S+ Sbjct: 680 -EQGDKE--EYMQIINTNNELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSM 736 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 Q N K L+ + ++ R+ D V Q+ N ++NAI +TP G I + Sbjct: 737 KQRVTNPKVQLVAVN-PYSVCRVRLDKNRVAQVVTNYVTNAIKYTPQG--TIEMGYEVVD 793 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + L VRDTG+G+ + K F ++ Q GTGLGL + KA+ ++ G Sbjct: 794 AGIRLYVRDTGIGIPEEKKRKVFHRFEKLDEFAQ----GTGLGLSICKAITESMGGSVGF 849 Query: 795 FSTPAKGTLIEIIFP 809 S ++G+L + P Sbjct: 850 ESEYSRGSLFWAVLP 864 >gi|89093729|ref|ZP_01166676.1| sensor histidine kinase with a response regulator receiver domain [Oceanospirillum sp. MED92] gi|89082125|gb|EAR61350.1| sensor histidine kinase with a response regulator receiver domain [Oceanospirillum sp. MED92] Length = 1144 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 142/262 (54%), Gaps = 8/262 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I +Q +L AK+ AE+ + KS +L +SHE+RTPL +I+G+++++ + Sbjct: 662 EIDAHEQTDRELQEAKEQAERANEAKSRYLTGISHELRTPLQSILGYAQLLSEKEEVASD 721 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R ++ I RSG + D++ LLDISKIE+G+++L V+L E + + + + ++ A Sbjct: 722 QKRGLKI---IHRSGQYLTDLIEGLLDISKIEAGRLDLFRNQVNLPELIDQMVEMFRVQA 778 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 ++K +++ + +P ++ D + ++QI +N+LSNAI +T G + N+ Sbjct: 779 DKKSLVLNFTLDGRLPDYVMTDEKRLRQILINLLSNAIKYTDKGK--VDFHIRYRNQVAE 836 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 VRDTG G+ L++ +PF ++ NS GTGLGL + K + + G + S Sbjct: 837 FVVRDTGPGIEKENLDRVFQPFERVRNSSNAHRPGTGLGLTIVKLLTEIMGGDLQVKSEI 896 Query: 799 AKGT--LIEIIFPLYDTSHPHD 818 G+ + ++ P D S D Sbjct: 897 GTGSEFRVSLLLPWLDQSQAED 918 >gi|323487478|ref|ZP_08092772.1| hypothetical protein HMPREF9474_04523 [Clostridium symbiosum WAL-14163] gi|323399160|gb|EGA91564.1| hypothetical protein HMPREF9474_04523 [Clostridium symbiosum WAL-14163] Length = 801 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 86/277 (31%), Positives = 145/277 (52%), Gaps = 22/277 (7%) Query: 556 LTMHDISEWKQEKNK----LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE--- 608 L + DI + K+E+ + L +A +AEK + K+DFL+R+SH+IRTP+ I+G + Sbjct: 372 LYLKDIDDVKKEEERKQRELQNALAMAEKANEAKTDFLSRMSHDIRTPMNVIVGMASVAR 431 Query: 609 -VIKNQRFGPL--------GN-PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 V++++ G GN + + I+ S +L ++ND+LD+SKIESGKM + Sbjct: 432 FVLQSEVKGTANLQCDEKTGNYAKLLNCLEKIEMSSAFLLSLINDILDMSKIESGKMKIA 491 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIH 717 ++L + + +++ A E+R S A + D + QI LN+L NA+ Sbjct: 492 NREMNLKDTIRNIKVMIEAQAEERRQTFLVSVAPEVGEFYYCDSLRLNQILLNLLGNALK 551 Query: 718 FTPSGGQIIISTTH---TSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 +TP G+I + T + E++I + DTG+GM+ + + PF Q EG Sbjct: 552 YTPEQGEIRLCVTAGKVEAGEQLIWFIISDTGIGMSEEFMARMFDPFEQQDFGGSRIFEG 611 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 TGLGL +++ +V+ G S P KGT+ + P+ Sbjct: 612 TGLGLSISRKLVELLNGTISAESEPGKGTVFTVKIPM 648 >gi|332308060|ref|YP_004435911.1| integral membrane sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175389|gb|AEE24643.1| integral membrane sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 903 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 138/260 (53%), Gaps = 11/260 (4%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 SE + +L AK AE+ + KS FLA +SHEIRTP+ IIG +V+ Sbjct: 370 SEQETLNAELVEAKHKAEQATVSKSMFLANMSHEIRTPMNGIIGLLDVVMKSELTSTQR- 428 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 ++ N + S +++ ++ND+LD SK+E+GK+++ SL+ + ++ + A E Sbjct: 429 ---QHLNKVVYSSQILMSLINDILDFSKVEAGKLDIEQVEFSLNSVFANLLTNISARAQE 485 Query: 682 KRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEE 736 K + +R NIP IL D + Q+ LN+ SNA+ FT +G + IS T+ SN+ Sbjct: 486 KNLNVRFICDPNIPPILIGDPLRISQVLLNLSSNAVKFTRNGS-VTISVTYDIIPNSNKL 544 Query: 737 VI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++ RV+DTG+GM+ +L+K + F Q S GTGLGL + K +V GK Sbjct: 545 LLRARVQDTGIGMSKEQLDKVFESFTQADGSTSRDFGGTGLGLTIVKQLVKLMGGKVTAE 604 Query: 796 STPAKGTLIEIIFPLYDTSH 815 S G+ E+ F L S+ Sbjct: 605 SKVNVGSTFEVSFTLISQSN 624 >gi|329934254|ref|ZP_08284333.1| histidine kinase [Streptomyces griseoaurantiacus M045] gi|329305850|gb|EGG49705.1| histidine kinase [Streptomyces griseoaurantiacus M045] Length = 460 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 84/279 (30%), Positives = 143/279 (51%), Gaps = 15/279 (5%) Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 + ++L ++ L +H SE + ++ +L A S K+ F +SHE+RTP+ A+ Sbjct: 187 LTRELETTNSGVLALH--SELEDKRRQLQEA-------SEAKTRFWTNISHELRTPVNAV 237 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 +G S ++ PL +P E I SG+ +L +V+DLLD++K E+G + +H EPV Sbjct: 238 VGLSRLLLTPGPSPL-SPEQQEQVELIAASGHTMLALVSDLLDVAKAEAGHLEIHAEPVD 296 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 + V+ L++ +A L+ ++ P ++ D + +I N+LSNA+ FT G Sbjct: 297 IRLVVTHLGGLLRSHAEGGVRLVLPPL-DDAPALVTDETLLVRILRNLLSNAMKFTERG- 354 Query: 724 QIIISTTH---TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 ++ + T + VI V DTGVG+ E+++ + F Q+ Q GTGLGLP Sbjct: 355 EVRLDVTADPDVHDRAVIFTVTDTGVGIPAEEIDRVFEAFYQVRGPHQRGRPGTGLGLPY 414 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 A+ + + G + ST +GT + + P D H C Sbjct: 415 ARTLAELLGGSLSLTSTVGEGTRVRVRVPDLDRPGAHAC 453 >gi|325474777|gb|EGC77963.1| sensor protein [Treponema denticola F0402] Length = 676 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 85/280 (30%), Positives = 147/280 (52%), Gaps = 17/280 (6%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + +T+ DI++ K ++ L A++ AEK +S +S FLA VSHEIRTP+ IIG E+I Sbjct: 113 FFVTIDDITKQKLKERFLIIARQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELINET 172 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + EY ++ S ++L +VND+LD SK+ESG M + +L ++V + + Sbjct: 173 NL----DEEQSEYTRQVNFSAEVLLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVD 228 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTH 731 L+ + A++K + I ++ IP I D ++Q+ LN + NA+ FT +G + + Sbjct: 229 LISMEAHKKGLEIVVDISDKIPDFIYGDPARLQQVLLNFVKNAVKFTETGYVSVSVKLVF 288 Query: 732 TSNEE---------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 +N + ++ V DTG+G+ N + K F Q + + GTGLGL ++K Sbjct: 289 ENNSDDPYAAKHFFILFEVADTGIGVNNEQKSKIFNSFYQGNAAINRKYGGTGLGLAISK 348 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH--PHDCI 820 ++ G+ I ++G++ PL + PH+ I Sbjct: 349 NIITMMKGQIGIKDNISRGSVFWFKIPLVPSKKKAPHESI 388 >gi|294777617|ref|ZP_06743068.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] gi|294448685|gb|EFG17234.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] Length = 1408 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 131/251 (52%), Gaps = 10/251 (3%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 ++K +L K ++ + K F ++HE RTPLT I+G E + NP+ IE Sbjct: 875 KQKGQLIQMSKKVQELTVDKLAFFTNITHEFRTPLTLIVGPIERALKLSY----NPQVIE 930 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 ++++R+ +L +VN L+D K+ESGKM + P + + ++E + YA+E+ I Sbjct: 931 QLHFVERNSKYLLSLVNQLMDFRKVESGKMEIVRNPGNFAKLLNELLVPFDAYASERGIT 990 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---HTSNEEVILRVR 742 I F I+ D ++ ++ +N++ NA+ FTP GGQI I T E++ + +R Sbjct: 991 IERRFRLPSCEIMYDEDAMHKVIVNLIGNALKFTPKGGQITIYATPFRQEEQEKLFICIR 1050 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQ--IRGE-GTGLGLPLAKAMVDANMGKFYIFSTPA 799 DTG G+ E++K F Q N I G+ GTG+GL L K +V + G + + Sbjct: 1051 DTGPGLPEEEIDKVFNRFYQSQNKTHSSINGQSGTGIGLYLCKRIVQLHGGSICAKNNQS 1110 Query: 800 KGTLIEIIFPL 810 KG I+ PL Sbjct: 1111 KGCSFRILLPL 1121 >gi|239908525|ref|YP_002955267.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798392|dbj|BAH77381.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 669 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 106/388 (27%), Positives = 189/388 (48%), Gaps = 24/388 (6%) Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 V+ R+ + + + Q+ +I A I I+NR+ ++++ N + + GY + L +P Sbjct: 153 VEARLGVEREKRFLEQVITIAGAA---ICIVNRDDVVVTINDEFTAITGYTRDQALGRPR 209 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 L ++ S + + ++ RQ+ T+ + ++L L+ P Sbjct: 210 VQLLRESPLSPCSTAPGDG-AVQKRQS----TIAARGGKRLTILK---NAAPILGADGQI 261 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 I + + + L A+ AE+ S KS FLA +SHEIRTPL AI+G S+++ Sbjct: 262 TGGIESFV-DVSDLIRAQVQAEEASRMKSAFLANMSHEIRTPLNAIMGLSQLLLRANL-- 318 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 P+ E + +G +L I+ND+LD S+IE G++ + P+ +D + E ++ Sbjct: 319 --PPQQRECVETMRAAGEGLLVILNDILDFSRIEMGRLEIRPAPMDIDRLLEEVRRVMAQ 376 Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-- 734 A+++ + + ++PR +L D +KQI LN+LSNAI FTPSG + + T+N Sbjct: 377 AADQQGLTLAIERDPSLPRVVLCDPVRLKQILLNLLSNAIKFTPSGRVTLSARRATANLG 436 Query: 735 ----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 V V DTG G+T E+ +PF Q ++ GTGLGL ++ +V+ G Sbjct: 437 HEGPPRVTFAVHDTGPGITPEVRERIFEPFVQTDDAVARNPGGTGLGLSISNRLVELLGG 496 Query: 791 K-FYIFSTPAKGTLIEIIFPLYDTSHPH 817 + ++P +G++ L + H Sbjct: 497 SGLELDTSPGRGSVFSFTLALPEPQAAH 524 >gi|257058733|ref|YP_003136621.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] gi|256588899|gb|ACU99785.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] Length = 844 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 133/255 (52%), Gaps = 9/255 (3%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++L K AE + KS FLA +SHE+RTPL AI+GFS+++ + N EY + Sbjct: 363 SQLQKTKNAAEAANRAKSQFLAHMSHELRTPLNAILGFSQLLNHDS---TLNEEQQEYID 419 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RSG +L ++ D+LD++KIE+G++ L +L + + L A +K + + Sbjct: 420 IINRSGEHLLALIQDILDMAKIEAGQITLQRNSFNLHRLIQTLEQMFYLKAQDKGLQLFV 479 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDT 744 +IP IL D ++Q+ +N+LSNAI FT GQII+ + + E ++ V D+ Sbjct: 480 EIDPSIPAYILTDEGKLRQVLINLLSNAIKFTQR-GQIILRVSEKPDPETPYLLFEVEDS 538 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G G+ E K PF Q ++ + EGTGLGL +++ V G ++ + GTL Sbjct: 539 GPGIECDEAPKLFNPFFQTELGRKTQ-EGTGLGLAISRHFVSIMGGSLWVSCPLSGGTLF 597 Query: 805 EIIFPLYDTSHPHDC 819 P+ C Sbjct: 598 HFDLPVEFACSEESC 612 >gi|256376496|ref|YP_003100156.1| multi-sensor hybrid histidine kinase [Actinosynnema mirum DSM 43827] gi|255920799|gb|ACU36310.1| multi-sensor hybrid histidine kinase [Actinosynnema mirum DSM 43827] Length = 1433 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 112/386 (29%), Positives = 192/386 (49%), Gaps = 39/386 (10%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R+ + ++ SIL A D I +GI+ N + ++FG+ E+ L V Sbjct: 558 RLAEERLARSAAHTDSILNAAGDAFVTIRPDGIVTRWNSSAERIFGWTGEEALGSAL-VD 616 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEK---ITLGSTKEEKLLSLRIIIKKLP-----FSS 552 L P +H LS +R+ +E LG+T+E +++ R + P +SS Sbjct: 617 LVVPDPQRADH-----LS-GVRRIIEGSRPTVLGTTRE--VVARRKDRSEFPAELTLWSS 668 Query: 553 CY------SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 Y S + DI+E K + +++ A+ A S KS F+A +SHEIRTPL +IG Sbjct: 669 HYEDRRVFSAFIRDITERKAAEEEIARARDEALSASRMKSAFVANMSHEIRTPLNGVIGL 728 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVS 663 +E++ + + R +YA + S + +L ++ND+LD SKIE+GK+ + F+P + Sbjct: 729 TELLLDTDL----DCRQRDYAQTLQNSADALLAVINDILDFSKIEAGKLEIDPVDFDPRA 784 Query: 664 L-DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 L ++ VS + Q E ++ P ++ D V+Q+ +N++SNAI FTP G Sbjct: 785 LVEDVVSLLAASAQAAGLEIAAVVHPPMP---PTLVGDAHRVRQVLVNLVSNAIRFTPKG 841 Query: 723 GQIII-----STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 ++ + S EV V DTG+G+ + + + F Q+ S + GTGLG Sbjct: 842 EVVVWVDVAPAAPGESGHEVTFTVADTGIGIPDERQQHLFEAFTQVDASTTRQYGGTGLG 901 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTL 803 L ++K +V+ G+ + S P +G++ Sbjct: 902 LTISKQLVELMGGEMGLASEPGEGSV 927 >gi|284037395|ref|YP_003387325.1| PAS/PAC sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283816688|gb|ADB38526.1| PAS/PAC sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 784 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 134/247 (54%), Gaps = 8/247 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L+ AK+ AE + KS+FLA +SHE+RTPL I+G++++ K +P ++ + Sbjct: 298 QLARAKEEAELANRAKSEFLANMSHELRTPLNGILGYTQLFKRDE---ALSPNQLKGVDI 354 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I +L ++ND+LD++KIE+ K+++ P L + I L+ + A +K + Sbjct: 355 IHNCAENLLVLINDVLDLAKIEAQKLDVQTAPFHLTALFQDLIHLIGVRAEQKGLRFLAD 414 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTG 745 A ++P ++ D R ++Q+ LN+L NA+ FT +GG + + T + LR V DTG Sbjct: 415 LAPDLPAWVMGDERKLRQVLLNLLGNAVKFTETGGVTLRVERASTKAQPYRLRFVVEDTG 474 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ + L KPF Q+ + Q EGTGLGL + +V G + S +GT Sbjct: 475 IGIASDHLAGIFKPFQQVRETGQFI-EGTGLGLSITDQLVQLLGGDLRVSSAIDEGTQFR 533 Query: 806 IIFPLYD 812 ++ L D Sbjct: 534 LLLDLPD 540 >gi|148655457|ref|YP_001275662.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148567567|gb|ABQ89712.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 894 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 85/265 (32%), Positives = 138/265 (52%), Gaps = 24/265 (9%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q +L A A++ K FLA VSHE+RTPL AIIGFS V+ ++ GP+ P E Sbjct: 599 QRTAELRTALARAQEADRLKGQFLAAVSHELRTPLNAIIGFSTVMLDEIDGPV-TPLQRE 657 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I+R+G +L +++DLLD+++IE+GK+ L PV + + E VQ + + I Sbjct: 658 DLKIINRNGRFLLHLIDDLLDLARIEAGKIELELAPVDVRALIVEVTETVQGLLHNRPIT 717 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG---------------------GQ 724 + + +P AD ++Q+ LN+LSNA+ FT G G Sbjct: 718 LNLALPERLPYAYADAARIRQVLLNLLSNAVKFTKRGSIDISARCVAAPDTQPGTKSAGA 777 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 +I+ + + + VRDTGVG+ +L + + F Q+ R G+GLGL +++ + Sbjct: 778 VIVRNGQRLHPYIAVSVRDTGVGIAPEDLTRIFEAFHQVRAGD--RQHGSGLGLAISRRL 835 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809 ++A+ G+ + S P KG++ I P Sbjct: 836 IEAHGGRIWAESEPGKGSVFTFILP 860 >gi|46578865|ref|YP_009673.1| sensor/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46448277|gb|AAS94932.1| sensor/response regulator [Desulfovibrio vulgaris str. Hildenborough] Length = 1513 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 84/269 (31%), Positives = 134/269 (49%), Gaps = 13/269 (4%) Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 CY DI++ + A K AE+ + KS+FLA VSHE+RTPL +G ++++ Sbjct: 1103 CY-----DITDAVNALESMCEASKRAEEANRTKSEFLANVSHELRTPLNGALGMLQLLEL 1157 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 +P +Y RSG ++ +++D+LD+S+IE+GK+ + P + E V E Sbjct: 1158 SSL----SPEQRQYVTTAIRSGQNLVRLLSDILDLSRIEAGKLVIEAIPCDIRELVDEVF 1213 Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTT 730 S L A K I + T+ A P + D ++Q N++ NA+ FT GG ++ ST Sbjct: 1214 STFSLDATGKGITLETTIAPGTPTYVRTDPLRLRQTLFNLVGNAVKFTEKGGVRVEFSTA 1273 Query: 731 HTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + ++L VRDTG G+ +E +PF Q+ S R G GLGL + +++ Sbjct: 1274 SMRGDAIVLFCTVRDTGPGIPEDRIESIFQPFTQLDGSYTRRHSGLGLGLGIVCRLMELF 1333 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 G + S P GT + P+ T P Sbjct: 1334 GGSIEVESAPDMGTAMHFAIPVGKTRRPQ 1362 >gi|262273972|ref|ZP_06051784.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP 101886] gi|262221782|gb|EEY73095.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP 101886] Length = 1112 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 136/252 (53%), Gaps = 8/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 ++ AK+ AE+ + K++FLA +SHEIRTP+ I+G S ++K N + + + Sbjct: 460 EMVRAKEDAERANEAKTNFLAMMSHEIRTPMNGIVGMSNLLKETDL----NQQQSYFVDT 515 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + S N +L+I+ND+LD++KIE+GKM L + L + V +A+ + A EK + + Sbjct: 516 LIHSSNALLNIINDVLDLTKIEAGKMRLIEQESELTDLVHDALVVFHAKAVEKSLRLHCL 575 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VRDTGV 746 ++PR ++ D QI LN++ NA+ FT G ++ + T +LR V+D+G+ Sbjct: 576 IDPHLPRWLILDPVRYTQIILNLVGNALKFTKHGSVMVHLSLVTEGGSDMLRLEVKDSGI 635 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + F Q+ NS +GTGLGLP+ + ++ G + S A GT Sbjct: 636 GIPEDKLHNIFENFTQVDNSYSRSYQGTGLGLPVCRKFIELMDGDIRVVSKEAVGTTFTA 695 Query: 807 IFPLYDT-SHPH 817 PL T PH Sbjct: 696 DVPLVVTPKRPH 707 >gi|158338730|ref|YP_001519907.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158308971|gb|ABW30588.1| two-component hybrid sensor and regulator, putative [Acaryochloris marina MBIC11017] Length = 805 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 81/244 (33%), Positives = 131/244 (53%), Gaps = 7/244 (2%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 SE +Q +LS AK+ AE S K FLA++SHE+RTPL AI+GFS+++ N Sbjct: 446 SELQQSNLELSQAKEAAEMASRAKGKFLAKMSHELRTPLNAILGFSQMMAQDTTLSEANH 505 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + I++SG +L ++ND+L ++K+ESGK L P L + + +L + Sbjct: 506 K---RNRLINQSGEHLLGLINDILSLAKLESGKQELREGPFQLSTLLETVEGIFRLRIEQ 562 Query: 682 KRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K + R ++P L D + ++Q+ +N+LSNA+ FTP+G + + + + LR Sbjct: 563 KGLAFRVKATPDLPPYLFGDAQKLRQVLINLLSNALKFTPAGHIFLRIGSIPTPAGLTLR 622 Query: 741 --VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + DTG G+ EL K PF Q + ++ + GTGLGLP+++ G + S Sbjct: 623 FEIEDTGEGIAASELHKLFVPFEQTESGEKSKA-GTGLGLPISQQFAQLMGGDIKVSSQV 681 Query: 799 AKGT 802 +GT Sbjct: 682 GQGT 685 >gi|60682125|ref|YP_212269.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] gi|60493559|emb|CAH08347.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] Length = 1022 Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 87/255 (34%), Positives = 137/255 (53%), Gaps = 12/255 (4%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + DI++ ++ +L AK +AE+ KS FLA +SHEIRTPL AI+GFS+++ N Sbjct: 621 IRVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSE- 679 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV-SEAISL 674 G+ EY I+ + L+L ++ND+LD+SK+ESG + L +E L E S A S+ Sbjct: 680 -EQGDKE--EYMQIINTNNELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSM 736 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 Q N K L+ + ++ R+ D V Q+ N ++NAI +TP G I + Sbjct: 737 KQRVTNPKVQLVAVN-PYSVCRVRLDKNRVAQVVTNYVTNAIKYTPQG--TIEMGYEVVD 793 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + L VRDTG+G+ + K F ++ Q GTGLGL + KA+ ++ G Sbjct: 794 AGIRLYVRDTGIGIPEEKKRKVFHRFEKLDEFAQ----GTGLGLSICKAITESMGGSVGF 849 Query: 795 FSTPAKGTLIEIIFP 809 S ++G+L + P Sbjct: 850 ESEYSRGSLFWAVLP 864 >gi|116694330|ref|YP_728541.1| signal transduction histidine kinase [Ralstonia eutropha H16] gi|113528829|emb|CAJ95176.1| signal transduction histidine kinase containing a receiver domain (hybrid) and a PAS sensor domain [Ralstonia eutropha H16] Length = 503 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 137/237 (57%), Gaps = 5/237 (2%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AE + KSDFL+ +SHE+R+PL AI+GF++++ + P + I + Sbjct: 114 RAQAAAEGANRAKSDFLSSMSHELRSPLNAILGFAQLMASDSP--PPPPAQQASIDQILK 171 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 +G +L+++N++LD++KIE+G+ +L EPVSL EA+ E ++V+ A ++ + +R N Sbjct: 172 AGWHLLELINEVLDLAKIEAGQASLSPEPVSLAEALRECHAMVEQQALKRGVRMRFPSFN 231 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 + AD +KQI LN+LSNAI + G + +S T+ + + + VRDTG G+ + Sbjct: 232 FPCFVRADRTRLKQILLNLLSNAIKYNRDQGTVEVSV--TAGDRIRISVRDTGAGLAREQ 289 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L + +PF ++ + EGTG+GL +AK +V+ G S G++ + P Sbjct: 290 LAQLFRPFNRL-GQEAGPEEGTGIGLVVAKRLVELMGGSIGAESAVEAGSVFWVELP 345 >gi|254522090|ref|ZP_05134145.1| Two component regulator three Y motif family [Stenotrophomonas sp. SKA14] gi|219719681|gb|EED38206.1| Two component regulator three Y motif family [Stenotrophomonas sp. SKA14] Length = 1168 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 133/242 (54%), Gaps = 10/242 (4%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S+ K+ FLA + HEIRTP+T ++G SE++ PL +P+ Y I Sbjct: 791 HKQELAEQASAAKTRFLANLGHEIRTPMTGVLGMSELLLAS---PL-DPQQRGYTQSIRH 846 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 +G +L +VND LD+++IESG++ L +P +L + + +L+ A +K +R + N Sbjct: 847 AGEHLLHLVNDALDLARIESGRLELQQKPFALSCLLQDLAALMGPLAAQKG--LRFTLDN 904 Query: 693 NIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 +P + D V+QI LN+LSNA+ FT G + + + + VRDTG G++ Sbjct: 905 QLPPGLQATGDAMRVRQILLNLLSNAVKFTSRGTITLHARSDGELRALHFEVRDTGPGIS 964 Query: 750 NYELEKAMKPFGQIPNSQ-QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + ++ + F Q ++ + G+GLGL + + + A G+ + S +GT + Sbjct: 965 QEQQQRLFRRFEQADGARTAAQYGGSGLGLAICRELAQAMQGRIQVESQLGRGTCFGVTL 1024 Query: 809 PL 810 PL Sbjct: 1025 PL 1026 >gi|77359078|ref|YP_338653.1| sensor protein [Pseudoalteromonas haloplanktis TAC125] gi|76873989|emb|CAI85210.1| putative sensor protein; similar to LuxQ in Vibrio harveyi, similar to ArcB sensor in E. coli [Pseudoalteromonas haloplanktis TAC125] Length = 896 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 84/246 (34%), Positives = 128/246 (52%), Gaps = 7/246 (2%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 ++ L K+ A++ S KS FLA +SHE+RTP+ I G + Q YIE Sbjct: 508 RQTRTLRQEKQKADEASQIKSQFLANMSHEVRTPINGIKGLHYLALQQNDWQQART-YIE 566 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A D + ++L ++NDLLD SK+E+GK++L EPV + E I+L+Q + K + Sbjct: 567 QA---DGALGVLLRVLNDLLDFSKMEAGKLDLMQEPVDIGRLAEEVINLIQFEVSVKSLE 623 Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 I+ + N ++ D +KQ+ LN+L+NA+ FT G I S L V DT Sbjct: 624 IKLDYDKNTNLMINTDAIRLKQVLLNLLNNAVKFTAQGS--ITLKIWQSKTMTYLSVSDT 681 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ +K +PF Q NS + GTGLGL + K +V+ G + ST +G+ Sbjct: 682 GIGISKEAQKKLFRPFAQADNSTSRQYGGTGLGLSICKKLVELMGGAIDLKSTAGQGSTF 741 Query: 805 EIIFPL 810 PL Sbjct: 742 TFSLPL 747 >gi|37521385|ref|NP_924762.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35212382|dbj|BAC89757.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 448 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 130/242 (53%), Gaps = 5/242 (2%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 ++ AE + K +FLA +SHE+RTPL IIG+++++K G + + +E I+R Sbjct: 198 QSRLAAEAANRAKDEFLALLSHELRTPLNPIIGWTQMLKR---GSVAADKQVEVLEIIER 254 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 + L ++ DLLD+++IE GK + +PV L V A+ V+ A + + + A Sbjct: 255 NAKLQNQLIQDLLDVARIEQGKFSHRPQPVILSGVVQAAVEAVRTLAKDAGVALEVEVAE 314 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 +P ++ D ++Q+ N+L+NAI FTPSGG + + ++ + L V D+G G++ Sbjct: 315 RLPEVMVDPTRMQQVVWNLLTNAIKFTPSGGWVQLHLVEAAD-CLCLVVSDSGTGISPAF 373 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLY 811 + + F Q ++ R G GLGL + + +V+ + G+ + S KG + + PL Sbjct: 374 IPHLFERFRQAGDAGTRRQGGLGLGLFIVRYIVELHGGRVWAKSDGQGKGAVFTVELPLC 433 Query: 812 DT 813 + Sbjct: 434 EC 435 >gi|37675668|ref|NP_936064.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] gi|37200207|dbj|BAC96034.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] Length = 646 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 127/247 (51%), Gaps = 8/247 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK+ AE + KS+FLA +SHEIRTP+ IIG + ++K + +Y Sbjct: 230 ELKSAKEQAEVANVKKSEFLATMSHEIRTPMNGIIGVASLLKEMDL----SSEQKQYVEM 285 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+ S +LDI+ND+LD SKIE+GKM + EP L + V + ++ L A+ K + Sbjct: 286 INHSSESLLDIINDILDFSKIEAGKMAISLEPFCLSDLVEQMCAIYTLKAHAKNLQFVVE 345 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTG 745 A ++P ++ D + +KQ+ N+L NA+ FT G ++ + + +V D+G Sbjct: 346 LAEDVPHTMSGDSKHLKQVLNNLLGNAVKFTERGYVKLVVAKELDAQHIPHIRFQVFDSG 405 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ + E + F Q S + GTGLGL + + +V G+ + S G+ E Sbjct: 406 IGIAKEKQELVFERFQQADGSTTRKYGGTGLGLAICRRLVSLMGGELELKSEVGLGSCFE 465 Query: 806 IIFPLYD 812 P D Sbjct: 466 FSVPCVD 472 >gi|17228319|ref|NP_484867.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130169|dbj|BAB72781.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1002 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 138/252 (54%), Gaps = 16/252 (6%) Query: 578 AEKE-SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ---RFGPLGNPRYIEYANYIDRS 633 AEKE K+DF++ VSHE+RTPLT+++GF+ +I+ + P+ + + I R Sbjct: 521 AEKEIDKMKTDFISTVSHELRTPLTSVLGFASIIQEKLQTDVFPVLSTEDRKLQKTIKRV 580 Query: 634 G---NLVLD-------IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 G N+++ ++ND+LDI+K+E+GK+ +P++ E + A + Sbjct: 581 GDNLNIIVSEAERLTSLINDVLDIAKMEAGKVEWQMQPINPGELLDWAANSTAALFETNG 640 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + + T + +P+I+ D + Q+ +N++SNA+ FT G + + V + V D Sbjct: 641 LQLLTEIESGLPQIIGDRNRLLQVLINLISNAVKFTEFGS--VTCRVKQDKDGVCISVID 698 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TGVG+ + K + F Q+ ++ + +GTGLGLP+ K +V+ + G+ ++ S P G++ Sbjct: 699 TGVGIAPEDQPKVFEKFRQVGDTLTDKPKGTGLGLPICKQIVEHHGGRIWVESEPGHGSV 758 Query: 804 IEIIFPLYDTSH 815 P+Y ++H Sbjct: 759 FSFQIPIYASNH 770 >gi|119490652|ref|ZP_01623057.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] gi|119453817|gb|EAW34974.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] Length = 1064 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 84/245 (34%), Positives = 140/245 (57%), Gaps = 11/245 (4%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q +L+ AK+ AE + KS F+A +SHE+RTPL AI+GFS+++ R L N + E Sbjct: 585 QRTQELAEAKEKAEVANVAKSAFIANMSHELRTPLNAILGFSQIMN--RSSNLPN-EHQE 641 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I+RSG +L ++N++LD+SKIE+GK+ L+ + L + E L +L + + + Sbjct: 642 SVKIINRSGEYLLTLINNILDVSKIEAGKITLNSKNFYLVRLLDEIEELFKLKSINQGLQ 701 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT------SNEEVI 738 + +NIP+ I D ++++ +N+LSNA+ FT GG + T + S + + Sbjct: 702 LYFEREDNIPQYIQTDELKLREVLINLLSNAMKFTQVGGIYLRVKTRSTPETEPSTQTLY 761 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTGVG+ + EL + + F Q + +Q + EGTGLGL +++ V+ G+ + S Sbjct: 762 FEVEDTGVGILSEELSQLFEAFSQTQSGKQAQ-EGTGLGLAISQKFVELMGGEINVKSQA 820 Query: 799 AKGTL 803 GT+ Sbjct: 821 GVGTI 825 >gi|218441882|ref|YP_002380211.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218174610|gb|ACK73343.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 955 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 82/239 (34%), Positives = 132/239 (55%), Gaps = 11/239 (4%) Query: 559 HDISEWKQ---EKNKL----SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 DI+E KQ E+ L A+++AE + K +FLA +SHE+R+PL I+G+++++ Sbjct: 548 RDITERKQIEQERENLLIQEQAAREVAESANRIKDEFLAVLSHELRSPLNPILGWAKLLN 607 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 P + + + + I+R+ L +++ DLLD+S+I GK+ L V+L + A Sbjct: 608 THTLEPATHQKAL---SIIERNAQLQAELIEDLLDVSRILRGKLTLKIVSVNLGFIIDSA 664 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 I ++L A K I I+T NI +L D ++QI N+LSNA+ FTP+GG++ I Sbjct: 665 IETIRLAAQAKNIQIQTKLDPNIGEVLGDPARLQQIVWNLLSNAVKFTPTGGKVEIELNS 724 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 N I RV DTG G+T+ L F Q ++ G GLGL +A+ +V+ + G Sbjct: 725 LGNWAKI-RVTDTGKGITSDFLPHIFDYFRQADSTTTRIFGGLGLGLAIARHLVELHGG 782 >gi|170748185|ref|YP_001754445.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170654707|gb|ACB23762.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 1157 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 130/233 (55%), Gaps = 12/233 (5%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KNQRFGPLGNPRYIEYANYIDRSGNL 636 AE+ S+ KS+FLA +SHEIRTPL +IG+++++ GP A+ I +G Sbjct: 664 AERASAAKSEFLAAMSHEIRTPLNGVIGYADLLLDGTDLGPAAR----RNADRIRTAGAA 719 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP- 695 +L +VND+LD SK+E+G++ + P +++ + A+S+V+ A K + + + +P Sbjct: 720 LLTVVNDVLDFSKVEAGQIEIVPRPFAVEALIDNAVSIVRPSAERKGLALTVALGPGLPD 779 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGG---QIIIS---TTHTSNEEVILRVRDTGVGMT 749 I D ++QI LN+L+NA+ FT SGG + +S + T + VRDTG+G+ Sbjct: 780 WIEGDEDRLRQILLNLLNNAMKFTASGGIDLSVRVSPDAASATGGTRLRFAVRDTGIGIP 839 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + ++ + F Q+ S GTGLGL ++K++V G + ST G+ Sbjct: 840 TDKCDRLFRRFSQVDGSISREYGGTGLGLAISKSLVTLMGGTIGVASTVGHGS 892 >gi|188584128|ref|YP_001927573.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium populi BJ001] gi|179347626|gb|ACB83038.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium populi BJ001] Length = 857 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 78/265 (29%), Positives = 137/265 (51%), Gaps = 5/265 (1%) Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + LP + LT D++ + L+ E+ S + F+ VS+E+R+PLT IIG Sbjct: 584 QPLPLGATL-LTFIDVTASANVERALTEKNDALERASQLRDTFVHHVSYELRSPLTNIIG 642 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 F++++ ++ G L N R EY+ +I RS +L I+ND+LD++ I++G + L E + + Sbjct: 643 FTQLLGDETVGAL-NERQREYSEHIMRSSAALLVIINDILDLASIDAGSLELQRETIDVR 701 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 V A+ ++ E I + + + AD + V+QI N+LSNA+ F+ G Q+ Sbjct: 702 ATVDAAVRGIEDRLAESDIRLDLDVPEGVGSVFADGKRVRQILFNLLSNAVGFSEPGQQV 761 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + E+ L V D G G+ +++ F N+ + G GLGL + ++ V Sbjct: 762 RVE-ARREGAELRLTVIDRGRGIAPEVIDRVFDRFES--NTLGTKHRGVGLGLSIVRSFV 818 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810 + + G+ I S P GT + +FP+ Sbjct: 819 ELHGGRVEIHSAPGTGTRVTCLFPV 843 >gi|307943374|ref|ZP_07658718.1| putative sensor histidine kinase transmembrane protein [Roseibium sp. TrichSKD4] gi|307773004|gb|EFO32221.1| putative sensor histidine kinase transmembrane protein [Roseibium sp. TrichSKD4] Length = 796 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 76/259 (29%), Positives = 134/259 (51%), Gaps = 10/259 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+++ + + +L A+ AE + KS FLA VSHEIRTPL I+G + ++++ R Sbjct: 255 VLRDVTDRRIIEEELLAARHSAESSNEAKSRFLATVSHEIRTPLNGILGMAALLRDTRL- 313 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 I Y ++ SG +L +++++LD SK+E+GK+++ P L + L+ Sbjct: 314 ---TKEQIAYIEALETSGETLLFLIDEVLDFSKVEAGKLDIQTAPTRLSSLADSVVELLA 370 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A+ K + I T +P + D V+QI N+ N + FT +GG + I N Sbjct: 371 PKAHAKSLEIGTRIDPRLPETVTLDATRVRQILFNLAGNGVKFTDTGG-VSIEVDGVENG 429 Query: 736 E----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 ++++VRDTG+G + E E+ + F Q+ + + GTGLGL +A+ + G+ Sbjct: 430 SDGSLLVIQVRDTGIGFNDAEAERLFEEFEQVDHGPARKFGGTGLGLAIAQRLTQLMGGQ 489 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + G L E++ P+ Sbjct: 490 IRAAAVAGGGALFEVVLPI 508 >gi|86608466|ref|YP_477228.1| sensor histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557008|gb|ABD01965.1| sensor histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 587 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 83/252 (32%), Positives = 136/252 (53%), Gaps = 8/252 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN-PRY 623 +Q+ +L A+ AE + KS FLA SHE+RTPL IIGF +++ + G N Sbjct: 300 RQKNKELEQARAQAESANQLKSQFLANTSHELRTPLNGIIGFIKLVLD---GMAENREEE 356 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 +++ RS +L ++ND+LDI+KIE+GKM L F+P L + + L A++K Sbjct: 357 LDFLQEAYRSALHLLALINDVLDIAKIEAGKMQLEFQPCDLRALFKDVEAKTSLQASQKG 416 Query: 684 ILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LR 740 + + N +I L D + + Q+ LN++ NAI FTP G + + N + +R Sbjct: 417 LQLSFHLPNTSDQILLLGDYQRLLQVMLNLVGNAIKFTPKGSVTVRADILPGNPGLARIR 476 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPA 799 V DTG+G++ + +K + F Q+ S + GTGLGL +++ +V+A G+ +S Sbjct: 477 VIDTGIGVSLEKQQKLFQAFTQVDGSTTRQYGGTGLGLAISQRLVEAMGGEINFYSLGEG 536 Query: 800 KGTLIEIIFPLY 811 G+ + PLY Sbjct: 537 LGSTVTFTVPLY 548 >gi|83815891|ref|YP_446117.1| sensory box histidine kinase/response regulator [Salinibacter ruber DSM 13855] gi|83757285|gb|ABC45398.1| sensory box histidine kinase/response regulator [Salinibacter ruber DSM 13855] Length = 1208 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 127/247 (51%), Gaps = 6/247 (2%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ-----RFGPLGNPR 622 + +L AK+ AEK S KS FLA +SHEIRTPLT+I+GF+E I + R + + Sbjct: 947 EQELVDAKETAEKMSRLKSAFLANISHEIRTPLTSILGFAEAIGGEVEGARRVEEVDHAS 1006 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +++ I++SG ++D + +L++SK+++G+M L EP+ L + A A+ Sbjct: 1007 LARFSSLIEQSGQRLMDTLTGVLNLSKLQAGEMTLDLEPIDLAAEAAAAAHEFAPQADGA 1066 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + + + + AD V+ + N+LSNAI +T GG + I T E +L V Sbjct: 1067 GVALELTEEDTAVWARADRSGVQIVLRNLLSNAIKYTEEGGTVWIR-ARTDGEHAVLEVE 1125 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+GM + + F Q EGTGLGL + K ++D G + + +G+ Sbjct: 1126 DTGIGMDPNTADVLFEAFKQASEGIGREYEGTGLGLTVTKEVLDQMDGAVAVETEQGEGS 1185 Query: 803 LIEIIFP 809 + P Sbjct: 1186 RFTVWLP 1192 >gi|51595100|ref|YP_069291.1| hybrid sensory histidine kinase BarA [Yersinia pseudotuberculosis IP 32953] gi|51588382|emb|CAH19990.1| bifunctional multimodular BarA: sensory histidine kinase in two component regulatory system, activates OmpR [Yersinia pseudotuberculosis IP 32953] Length = 942 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 84/238 (35%), Positives = 129/238 (54%), Gaps = 8/238 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ S KS+FLA +SHE+RTPL +IGF+ Q P +Y Sbjct: 277 ELGLAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFTR----QTLKTSLTPTQTDYLQT 332 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RS N +L I+ND+LD SK+E+ K+ L P SL + E I L+ A+EK + + Sbjct: 333 IQRSANNLLCIINDVLDFSKLEADKLILEHIPFSLRGTLDEVIILLAHTAHEKGLELTLH 392 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVR--DTG 745 N++P ++L D ++QI N+L NAI FT G I++ ++++V L V DTG Sbjct: 393 INNDVPDQVLGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTG 452 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G++ + + + F Q S R GTGLGL + + +V G S + G++ Sbjct: 453 IGISESQQAQLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSI 510 >gi|304312878|ref|YP_003812476.1| hypothetical protein HDN1F_32580 [gamma proteobacterium HdN1] gi|301798611|emb|CBL46841.1| Hypothetical protein HDN1F_32580 [gamma proteobacterium HdN1] Length = 874 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 133/238 (55%), Gaps = 11/238 (4%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 + ES K++FLA+VSHEIRTP+ I+G E++ R +P Y + I+ +G+ ++ Sbjct: 434 QAESRAKTEFLAKVSHEIRTPMNGILGLVELLGMTRL----SPEQSRYVSAINSAGHTLV 489 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RI 697 ++VND+LD SK+ GKM L+ + L E + + + ++ A +K + +R +P RI Sbjct: 490 EVVNDILDYSKLVIGKMTLNEQEFDLRELLEDCAVIFEMPARKKALDLRIMIRAGVPLRI 549 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILR--VRDTGVGMTNYE 752 D ++Q+ LN+LSNAI +T G I + + T +++V+LR V D+G G+ + Sbjct: 550 HGDAMRLRQVVLNLLSNAIKYTEY-GHIFVRLSLTDEIQDDKVVLRFAVEDSGCGIDRAD 608 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + F QI N R GTGLGL +++ ++ G + ST +G++ P+ Sbjct: 609 QSRLFQSFSQIHNDITERETGTGLGLVISQQIIGLMGGTIGVDSTLGRGSVFWFTLPV 666 >gi|254507539|ref|ZP_05119673.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Vibrio parahaemolyticus 16] gi|219549609|gb|EED26600.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Vibrio parahaemolyticus 16] Length = 929 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 83/252 (32%), Positives = 138/252 (54%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K + L N + +Y N Sbjct: 275 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTK----LTNSQ-TDYLN 329 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S +L+I+ND+LD SK+E+GK+ L P E++ E +SL A+EK + + Sbjct: 330 TIEKSATNLLNIINDILDFSKLEAGKLALESIPFDFQESLEEVVSLQATSAHEKGLELTL 389 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDT 744 IP ++ D ++Q+ N++ N+I FT G I + E+V+ VRDT Sbjct: 390 KIDPKIPAGLVGDSLRIQQVLTNLVGNSIKFTEHGNIDISVEMRSQKEDVVELQFMVRDT 449 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 450 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTF 509 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 510 WFTLRLHSTDMP 521 >gi|237746831|ref|ZP_04577311.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes HOxBLS] gi|229378182|gb|EEO28273.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes HOxBLS] Length = 872 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 92/265 (34%), Positives = 139/265 (52%), Gaps = 20/265 (7%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV---IKN 612 ++ D+S+ KQ + L A AEK + KS FL+R+SHEIRTP+ AIIG + + + N Sbjct: 317 FSITDLSDIKQAQQVLKDALFNAEKANEAKSSFLSRMSHEIRTPMNAIIGMTTIAATVMN 376 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 R + + I S +L ++ND+LD+SKIESGKM + +P L E + Sbjct: 377 DR------AKLENCLSKIALSSRHLLMLINDVLDVSKIESGKMTVTKDPFELGELMQNIG 430 Query: 673 SLV--QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII---- 726 S++ Q ++ I T+ + R D+ + QI +NILSNA+ FTP G++ Sbjct: 431 SIIYSQAITKKQHFEIVTNVRHETLR--GDILRLNQILINILSNAVKFTPENGRVRLQVE 488 Query: 727 -ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 I+ HT + + D+G GM+ L + PF Q + EGTGLG+P+ K +V Sbjct: 489 EIAKRHTDQIWLRFTISDSGRGMSPEFLNRLFMPFEQENDGSGKLVEGTGLGMPITKNLV 548 Query: 786 DANMGKFYIFSTPAKGTL--IEIIF 808 G + S P KGT+ +EI F Sbjct: 549 TLMNGTINVESVPGKGTVFTVEIGF 573 >gi|302035961|ref|YP_003796283.1| putative histidine kinase [Candidatus Nitrospira defluvii] gi|300604025|emb|CBK40357.1| putative Histidine kinase [Candidatus Nitrospira defluvii] Length = 954 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 102/377 (27%), Positives = 179/377 (47%), Gaps = 32/377 (8%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ----NTPSV 508 Q ++E+ +G+ +I+ G I N+ V +FGY E++L +P + + + N P+ Sbjct: 269 QFRQVVESAPNGMLMIDSLGNITLVNKQVETMFGYSREEMLGRPVEMLIPERFRPNHPAH 328 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII-----KKLPFSSCYSLTMHDISE 563 Y + S + E L + +E + L + KL +S +TM +E Sbjct: 329 RIGYFSAPSSRAMGAGRELFGLHKSGQEFPVELGLNPIDTPNGKLALASIVDITMRKRTE 388 Query: 564 -----------WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 WK + +S A+ A K K+DFLA +SHEIRTP+ ++G + ++ + Sbjct: 389 SALSKAAQDLEWKNWE--ISEARDQAVKAGQAKTDFLATMSHEIRTPMNGVLGMTTLLLD 446 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + +Y + S +L I+ND+LD SKIE+GK + P L + + + Sbjct: 447 TAL----STEQRDYLQTLRHSSESLLRIINDILDFSKIEAGKFTIEQIPFDLRMTIEDTL 502 Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 ++ + ++ + + PR ++ D ++Q+ N+L NAI FT G+++I Sbjct: 503 DMLAPASQDRHLELVGLIDAQTPRTVIGDPGRIRQVLTNLLGNAIKFTEQ-GEVLIQVLP 561 Query: 732 TSNEE--VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + V+LR V DTG+G++ K + F Q +S + GTGLGL + K +V+ Sbjct: 562 LDEDPTFVMLRFEVIDTGIGLSPEAQAKMFQAFTQADSSTARKYGGTGLGLTICKRLVEL 621 Query: 788 NMGKFYIFSTPAKGTLI 804 G+ + S P GT I Sbjct: 622 MGGEIGLQSMPGLGTRI 638 Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 7/91 (7%) Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 ++L +I++ DGI +IN GII S N AV+++FGY +L + + + + + Sbjct: 147 VRLRAIVDTAVDGIVVINERGIIESVNPAVTRMFGYTSNQLLGQNVKLLMPDPYHTEHDR 206 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 YLT L Q+ +K +G +E +L LR Sbjct: 207 YLTNYL-----QSGQKKVIGIGRE--VLGLR 230 >gi|218245686|ref|YP_002371057.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] gi|218166164|gb|ACK64901.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] Length = 844 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 133/255 (52%), Gaps = 9/255 (3%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++L K AE + KS FLA +SHE+RTPL AI+GFS+++ + N EY + Sbjct: 363 SQLQKTKNAAEAANRAKSQFLAHMSHELRTPLNAILGFSQLLNHDS---TLNEEQQEYID 419 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RSG +L ++ D+LD++KIE+G++ L +L + + L A +K + + Sbjct: 420 IINRSGEHLLALIQDILDMAKIEAGQITLQRNSFNLHRLIQTLEQMFYLKAQDKGLQLFV 479 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDT 744 +IP IL D ++Q+ +N+LSNAI FT GQII+ + + E ++ V D+ Sbjct: 480 EIDPSIPAYILTDEGKLRQVLINLLSNAIKFTQR-GQIILRVSEKPDPETPYLLFEVEDS 538 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G G+ E K PF Q ++ + EGTGLGL +++ V G ++ + GTL Sbjct: 539 GPGIECDEAPKLFNPFFQTELGRKTQ-EGTGLGLAISRHFVSIMGGSLWVSCPLSGGTLF 597 Query: 805 EIIFPLYDTSHPHDC 819 P+ C Sbjct: 598 HFDLPVEFACSEESC 612 >gi|160880969|ref|YP_001559937.1| multi-sensor hybrid histidine kinase [Clostridium phytofermentans ISDg] gi|160429635|gb|ABX43198.1| multi-sensor hybrid histidine kinase [Clostridium phytofermentans ISDg] Length = 860 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 84/264 (31%), Positives = 143/264 (54%), Gaps = 14/264 (5%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI--K 611 +S + DI+E L ++ AEK +S KS FLA +SHEIRTPL AIIG ++++ K Sbjct: 316 HSAWIFDITESNNYMKNLIEMREQAEKANSAKSIFLAHMSHEIRTPLNAIIGLTDILLHK 375 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + F + I++A G +L ++ND+LD++KIESGK+ L EP L V E Sbjct: 376 DTDFELHNDILNIKHA------GGTLLSLINDVLDLTKIESGKLTLVDEPYKLTSVVHEV 429 Query: 672 ISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIII 727 I+++ + K + ++ S ++ IP+ D ++Q+ +N+++NA+ FT G Q+ + Sbjct: 430 INIIGVKLMSKPVSLQVSISDQIPKYFYGDELRLRQVLINLMNNAVKFTERGTISLQVEL 489 Query: 728 ST--THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 S+ T ++I VRDTG+G+ + ++ F Q + EG+GLGL + K ++ Sbjct: 490 SSFDLDTQTAQLIFHVRDTGLGIAKDDQKRIFHSFEQGSVGSDVLVEGSGLGLTICKRII 549 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 ++ G + S G+ P Sbjct: 550 ESAGGAIKVKSELGVGSDFSFTLP 573 >gi|153947037|ref|YP_001402279.1| hybrid sensory histidine kinase BarA [Yersinia pseudotuberculosis IP 31758] gi|152958532|gb|ABS45993.1| signal transduction histidine-protein kinase BarA [Yersinia pseudotuberculosis IP 31758] Length = 930 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 84/238 (35%), Positives = 129/238 (54%), Gaps = 8/238 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ S KS+FLA +SHE+RTPL +IGF+ Q P +Y Sbjct: 277 ELGLAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFTR----QTLKTSLTPTQTDYLQT 332 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RS N +L I+ND+LD SK+E+ K+ L P SL + E I L+ A+EK + + Sbjct: 333 IQRSANNLLCIINDVLDFSKLEADKLILEHIPFSLRGTLDEVIILLAHTAHEKGLELTLH 392 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVR--DTG 745 N++P ++L D ++QI N+L NAI FT G I++ ++++V L V DTG Sbjct: 393 INNDVPDQVLGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTG 452 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G++ + + + F Q S R GTGLGL + + +V G S + G++ Sbjct: 453 IGISESQQAQLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSI 510 >gi|95930791|ref|ZP_01313523.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95133139|gb|EAT14806.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 1969 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 107/375 (28%), Positives = 180/375 (48%), Gaps = 18/375 (4%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 R+++ ++L +I +A S GIA I ++ I+ NR + ++FGY ++L V+ + Sbjct: 1088 RELKQSNLKLQAIFDAASSGIAQI-KDRTIIRCNRRMEEIFGYGPGEMLNLSTRVWYASD 1146 Query: 505 TPSV-MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHD 560 + + + + E ++ L + L K+ R KKL + D Sbjct: 1147 SQYLKVGEQVKEAMA-RLGEYSSGDILLRRKDGSRFWARSKAKKLQLEGAENTFVSMFDD 1205 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ++ ++ L AK+ AE+ + KS FLA +SHEIRTP+ AIIG + ++K Sbjct: 1206 VTAEREAAEALRLAKESAEEANQAKSSFLANMSHEIRTPMNAIIGLAHLLKRD-----AT 1260 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P+ + + + +L I+ND+LD SKIE+GKM L L+ + SL+ A Sbjct: 1261 PQQVGQLEKVSDAAQHLLRIINDILDFSKIEAGKMILEPMDFELENVIDTVRSLLSEKAV 1320 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 +K + T+ A ++P+ L D + QI LN +NA+ FT + G I + E + Sbjct: 1321 DKGLEFITNIA-DLPQYLHGDGLRLGQILLNFAANAVKFT-TNGSISLHAEQLGEESDTI 1378 Query: 740 RVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +R DTGVGMT + + F Q S + GTGLGL +++ + D G+ + Sbjct: 1379 WIRFTVSDTGVGMTEAQQRHLFEAFEQGDRSTTRQFGGTGLGLAISRKLTDLMGGEIGVK 1438 Query: 796 STPAKGTLIEIIFPL 810 S P G+ + P Sbjct: 1439 SEPGSGSKFWVDLPF 1453 >gi|283853339|ref|ZP_06370587.1| histidine kinase [Desulfovibrio sp. FW1012B] gi|283571263|gb|EFC19275.1| histidine kinase [Desulfovibrio sp. FW1012B] Length = 923 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 76/247 (30%), Positives = 136/247 (55%), Gaps = 9/247 (3%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I E +Q + +L AK +AE+ + K+DFLA+V+HEIRTPL +I G ++ + + N Sbjct: 376 ILENEQYQKELKLAKDLAEEANKTKTDFLAKVTHEIRTPLNSIKGMNDYLLSTSL----N 431 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 E + I S N +L IVNDLLD+SKIE+G++ +L + + I ++Q AN Sbjct: 432 DDQRECLSIIKESSNHLLTIVNDLLDLSKIEAGQLVFEHIDFALKQLIESTIRILQPLAN 491 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---- 735 +K++ + ++ + ++ D ++Q+ N+ +NA+ FT +G I+++ Sbjct: 492 QKKLDLHVAYEGDADIVVRGDPSRIRQVLFNLANNALKFTQTGTVGIVASVAWQESLDAY 551 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + + ++DTG+G+ L++ +PF Q NS + GTGLGL + ++ G + Sbjct: 552 AITISIKDTGIGIAAEALQRIFQPFVQSDNSTSRKFGGTGLGLSICNQLIALMGGTIAVS 611 Query: 796 STPAKGT 802 S P +G+ Sbjct: 612 SRPGQGS 618 >gi|239909191|ref|YP_002955933.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239799058|dbj|BAH78047.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 722 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 104/361 (28%), Positives = 176/361 (48%), Gaps = 32/361 (8%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +L+A SD + + + G +L+ N A + G P E I+ K F E V + L + Sbjct: 358 LLDAASDRVVVADASGQVLAVNAAAAAGLGLPGEAIVGKTFA---EVFPGKVGENRLAQ- 413 Query: 517 LSLDLRQTLEKITLGS----TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 LR+ +E LG T E + II LP + + + + ++ + Sbjct: 414 ----LRRAVE---LGRRMRFTDERAGILFDIIAAPLPTPAD---ALPRAALFARDATAMI 463 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A++ AE S KSDFLA VSHE+RTPL IIG +V+ +P + I++ Sbjct: 464 QARQAAEAASQAKSDFLANVSHELRTPLNGIIGMGQVLAASNL----DPDQRQCLADIEQ 519 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 + +L +V +LLD+S++ES K+ L +P L + + + A EK + + + A Sbjct: 520 AAGALLHLVENLLDLSRLESEKLALDNQPFVLSSILQGVEATLAPLAQEKGLELSAAVAG 579 Query: 693 NIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII---------ISTTHTSNEEVILRVR 742 ++P +L D ++Q LN+ NA+ FTP+G I ++ EV VR Sbjct: 580 DVPELLYGDGGKLRQALLNLGGNAVKFTPAGSVTIEAYCAKPCVLAGPEGETVEVGFAVR 639 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ + E+ + F Q+ S R GTGLGL +++ +++A G+ + S +G+ Sbjct: 640 DTGIGIAKADQERIFERFTQVDASSTRRFGGTGLGLAISRGLIEAMGGELAVDSEHGQGS 699 Query: 803 L 803 + Sbjct: 700 V 700 >gi|2073556|gb|AAB53936.1| sensor/regulator protein RpfA [Pectobacterium carotovorum subsp. carotovorum] Length = 929 Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 86/238 (36%), Positives = 133/238 (55%), Gaps = 10/238 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + +K PL N +Y Sbjct: 277 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGLIGFTRQTLKT----PL-NTTQTDYLL 331 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS N +L+I+ND+LD SK+E+GK+ L P SL + + + L+ A+EK + + Sbjct: 332 TIERSANNLLNIINDVLDFSKLEAGKLVLEDIPFSLHNTLDDVVMLLAHTAHEKGLELTL 391 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDT 744 S N++P + + D ++QI N+L NAI FT G I + +V+L V RDT Sbjct: 392 SIQNDVPEQFVGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQELHQVLLEVQIRDT 451 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G+ + + + F Q S R GTGLGL + + +V G S +KG+ Sbjct: 452 GIGIAELQQSQLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSELSKGS 509 >gi|266622910|ref|ZP_06115845.1| putative His Kinase A domain protein [Clostridium hathewayi DSM 13479] gi|288865336|gb|EFC97634.1| putative His Kinase A domain protein [Clostridium hathewayi DSM 13479] Length = 614 Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 84/265 (31%), Positives = 138/265 (52%), Gaps = 27/265 (10%) Query: 560 DISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV--- 609 D+++ ++ + KL+ A +AE + K+DFL+R+SHEIRTP+ AI+G + + Sbjct: 261 DVTQLREMQRKLTEQTEALKDALAVAEHANQAKTDFLSRMSHEIRTPMNAILGMTTIAAA 320 Query: 610 -IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 I +QR R + I S ++ ++ND+LD+SKI GK+ + E L+ V Sbjct: 321 YIDDQR-------RVEDCLEKIGYSSKHLMALINDVLDMSKISEGKVRIAHEVFDLETVV 373 Query: 669 SEAISLVQLYANEKRILIRT---SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 S++ A + + + +N + ++ D + QI LN+LSNA+ FTP+GG + Sbjct: 374 ESISSIIYPQAAARGLTFQVPLIDLSNTV--MIGDSLRLNQILLNLLSNALKFTPAGGTV 431 Query: 726 IISTTHTSNEEVILRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 + +E +R+R DTG+GM++ LE+ PF Q N GTGLG+P+ Sbjct: 432 RLEIRQLQRKEDRIRLRFTVLDTGIGMSDAFLERLFVPFEQEDNRVAQNSGGTGLGMPIT 491 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEI 806 K +V G + S KGT+ I Sbjct: 492 KNLVTLMGGTITVKSEVGKGTVFTI 516 >gi|156933160|ref|YP_001437076.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Cronobacter sakazakii ATCC BAA-894] gi|156531414|gb|ABU76240.1| hypothetical protein ESA_00970 [Cronobacter sakazakii ATCC BAA-894] Length = 973 Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 85/258 (32%), Positives = 133/258 (51%), Gaps = 7/258 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ Q P G Sbjct: 470 DVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTQEL-PKG 528 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + + S +L+L I++D+LD SKIES ++ + S E +S + Q Sbjct: 529 VDRLV---TAMHNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITANYQPLV 585 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P +L D ++Q+ N+LSNAI FT G II T + + Sbjct: 586 VRKQLGLYCFIEPDVPMSLLGDPMRLQQVISNLLSNAIKFTDIG--CIILHVGTQGDYLC 643 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + +++ G + + P Sbjct: 644 FRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDTEP 703 Query: 799 AKGTLIEIIFPLYDTSHP 816 G+ I PL+ P Sbjct: 704 GMGSQFTIRIPLWQAQLP 721 >gi|323699910|ref|ZP_08111822.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323459842|gb|EGB15707.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 1033 Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 83/254 (32%), Positives = 133/254 (52%), Gaps = 13/254 (5%) Query: 558 MH---DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 MH DI+E K +L A AE S K++FLA +SHEIRTPL ++G ++++ Sbjct: 633 MHMAADITEIKTMAAELEKAMAKAEAASLAKNEFLANMSHEIRTPLNGLLGMLQLMQMSE 692 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 PL +Y + SG +L ++ND+LD+SK+ESGK+ L P L E + + +S Sbjct: 693 LAPLQR----DYLDTALNSGRSLLQVLNDILDLSKVESGKLELEPIPFELGEVLDQVVST 748 Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + A E+ + +R +PR +AD ++QI N++ NA+ FT SG + + S Sbjct: 749 FRHCAEERGVSMRWEIDETLPRHFVADKGRLRQILFNLVGNAVKFTESGSIEVRACPLDS 808 Query: 734 NEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 E ++ V DTG+G+ ++ PF Q+ S + +GTGLGL + + +V Sbjct: 809 GAEDGTIRLLFEVSDTGIGIPRDKVSTVFDPFTQVDGSSTRKYQGTGLGLGIVRRLVALM 868 Query: 789 MGKFYIFSTPAKGT 802 G + + KGT Sbjct: 869 GGSITVDTEEGKGT 882 >gi|309790612|ref|ZP_07685166.1| PAS/PAC sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308227340|gb|EFO81014.1| PAS/PAC sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 973 Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 104/360 (28%), Positives = 177/360 (49%), Gaps = 17/360 (4%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++++AT+D I +++ ++ NR FG ++ K LEQ + + N + Sbjct: 373 AVVDATNDAILMLDERRRVMIINRRARFFFGISERELQEKD----LEQLS-IIFNRIFED 427 Query: 516 ILSLD--LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 LRQ L S E + RII + C+S + D+ + + L Sbjct: 428 PPRFHGWLRQLLR-----SPTERVVAEFRIIRPEARLLQCFSAPVMDLHD-RYLGRILVF 481 Query: 574 AKKIAEKESSH-KSDFLARVSHEIRTPLTAIIG-FSEVIKNQRFGPLGNP-RYIEYANYI 630 E+E KS+F++ VSHE+RTPLT+I G V+ +R G G P R + N Sbjct: 482 RDITREREVERMKSEFVSNVSHELRTPLTSIQGTLQLVLGPKRSGSEGLPQRARDLLNVS 541 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + ++ ++ND+LD++KIE G++ L E +S+++ A++ + +AN + + I Sbjct: 542 LSNTERLIRLINDILDVAKIEQGRIELRRETLSVEDLCRAAVAEMHAFANHRGMSIDMDL 601 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 +P +LAD QI +N+LSNAI F+ G Q ++ + T V VRD G G+ Sbjct: 602 QPGLPSVLADRDRSTQILINLLSNAIKFS-VGSQSVLLSARTDGSMVYFSVRDWGRGIDL 660 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 E+ + F QI +S GTGLGL ++KA+V+ G+ ++ S +G+ P+ Sbjct: 661 ENQERIFQKFVQIDSSATRDVGGTGLGLSISKALVEEQGGRIWLESELGRGSTFTFTLPV 720 >gi|88706907|ref|ZP_01104606.1| two-component system sensory histidine kinase [Congregibacter litoralis KT71] gi|88698829|gb|EAQ95949.1| two-component system sensory histidine kinase [Congregibacter litoralis KT71] Length = 508 Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 136/246 (55%), Gaps = 4/246 (1%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ--RFGPLGNPRYIEYANYID 631 AK+ A++ ++ KS FLA VSHE+RTPL AIIG+SE++ ++ P+ +Y + I Sbjct: 261 AKQSADEANAAKSRFLANVSHELRTPLNAIIGYSEMLHDELDDEAPVDREQYQSDLDKIV 320 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI-SLVQLYANEKRILIRTSF 690 SG +L +++D+LD+SKIE+GKM L E EA++ A+ +L L +L F Sbjct: 321 LSGRQLLALIDDILDLSKIETGKMTLVREAFHPGEALTMAVDALAPLLRRNGNVLECDDF 380 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 +++P+I D +Q+ +N+LSNA FT G + ++ S+ ++ + V DTG+GMT Sbjct: 381 -SDLPQIHNDAVKFRQVIVNLLSNAAKFTEQGVIRVSASFEASSAQLSIAVSDTGIGMTE 439 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F Q ++ GTGLGL + + + G + S+P +G++ + P Sbjct: 440 EQQALVFDAFVQAEDTTSNTYGGTGLGLAICRDFCELMGGTIAVQSSPGEGSVFTVSLPA 499 Query: 811 YDTSHP 816 S P Sbjct: 500 DPESVP 505 >gi|310768138|gb|ADP13088.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Erwinia sp. Ejp617] Length = 992 Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 85/264 (32%), Positives = 139/264 (52%), Gaps = 11/264 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG +++K + P G Sbjct: 487 DVSARVKMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTKAL-PAG 545 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 546 ADSLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLAMV 602 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +KR+ + +++P L D ++Q+ N+L+NAI FT +GG II + + + Sbjct: 603 VKKRLTLWCFIDSDVPVALDGDPMRLQQVISNLLNNAIKFTHTGG--IILQAYVKGDYLA 660 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 RVRD+GVG+ E+ + PF Q+ + Q+ +GTGLGL + + +++ G + S P Sbjct: 661 FRVRDSGVGIPAKEITRLFDPFFQVGSGVQLHFQGTGLGLAICEKLMNMMDGDIEVESEP 720 Query: 799 AKGTLIEIIFPLYD----TSHPHD 818 G+ + PLY+ T P D Sbjct: 721 GMGSQFIVRIPLYNSRVVTLEPRD 744 >gi|288941217|ref|YP_003443457.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288896589|gb|ADC62425.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 977 Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 86/259 (33%), Positives = 143/259 (55%), Gaps = 11/259 (4%) Query: 559 HDISEWKQEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 H + E E+ + L+ A+ AE+ + K +FLA +SHEIRTP+ A++G + +++ Q P Sbjct: 552 HHLEELVAERTEELTQARLEAERLAQSKGEFLANMSHEIRTPMNAVLGLAYLLERQ---P 608 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 L + + E A I RSG +L I+ND+LD SKIESG++ + P L E + +++V Sbjct: 609 LPDEAH-ELARQIHRSGQSLLHIINDILDFSKIESGRIEIERIPFQLGEVLDNLVTIVGT 667 Query: 678 YANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE 735 A +K I + ++ ++ D + QI +N+ SNA+ FT G ++ + + S+ Sbjct: 668 SAADKAIDLVIRPPEDLESSLVGDPLRLGQILINLTSNAVKFTSDGQVEVRVESIARSHT 727 Query: 736 EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 EV LR VRDTG+G+ +PF Q S R G+GLGL + + + + G+ Sbjct: 728 EVTLRFTVRDTGIGIDPETQAHLFQPFTQADASTTRRFGGSGLGLVICRRLAELMGGRLG 787 Query: 794 IFSTPAKGT--LIEIIFPL 810 + S P +G+ +E+ F L Sbjct: 788 LDSVPGEGSTFWLELTFGL 806 >gi|119898866|ref|YP_934079.1| putative two-component hybrid sensor and regulator [Azoarcus sp. BH72] gi|119671279|emb|CAL95192.1| putative two-component hybrid sensor and regulator [Azoarcus sp. BH72] Length = 831 Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 77/262 (29%), Positives = 137/262 (52%), Gaps = 8/262 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++ + + +L AK+ AE S K +FLA +SHEIRTP+ I+G ++++ + Sbjct: 146 RDVTRHRLRELELLQAKEAAEAASRAKGEFLANMSHEIRTPMNGILGMTDLLLDSALA-- 203 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P +Y + S +L ++ND+LD S+IE+G+++L S+ V+E + + L Sbjct: 204 --PEQRDYLQTVKSSAEALLTLLNDILDFSRIEAGRLSLEEIDFSISGLVAETLRTLALR 261 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSN 734 A++K + + A ++P +L D ++Q+ N++ NAI FT G + + T + Sbjct: 262 AHQKGVELFFDVAPDVPAVLKGDPARIRQVLTNLVGNAIKFTERGEIELDVTVVDTDDRH 321 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +++ VRDTG+G+ + E F Q NS + GTGLGL + K +V+ G+ + Sbjct: 322 ATLLVTVRDTGIGIPAEKTEAIFGAFAQADNSTTRKYGGTGLGLAICKHLVELMGGELRV 381 Query: 795 FSTPAKGTLIEIIFPLYDTSHP 816 ST +G+ L + P Sbjct: 382 QSTLGEGSRFSFSLRLARVASP 403 >gi|269960400|ref|ZP_06174773.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834827|gb|EEZ88913.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 932 Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 87/252 (34%), Positives = 140/252 (55%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQ-TDYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L+I+ND+LD SK+E+GK+ L P E++ E I+L A+EK + I Sbjct: 331 TIEKSANNLLNIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKGLEITL 390 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDT 744 IP+ ++ D ++QI N++ N+I FT G I + S + V L+ VRDT Sbjct: 391 KVDPKIPQGLVGDPLRIQQILTNLVGNSIKFTERGNIDISVEMRSQSGDSVELQFMVRDT 450 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTF 510 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 511 WFTVRLHSTEMP 522 >gi|266621905|ref|ZP_06114840.1| sensory box histidine kinase/response regulator [Clostridium hathewayi DSM 13479] gi|288866436|gb|EFC98734.1| sensory box histidine kinase/response regulator [Clostridium hathewayi DSM 13479] Length = 853 Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 85/274 (31%), Positives = 147/274 (53%), Gaps = 19/274 (6%) Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 +II L F +S+T + + N+L A++ A + + KS+FLA +SH+IRTP+ A Sbjct: 311 LIILTLIFLRYFSIT-------RSQLNELEKARQTALEANKAKSEFLANMSHDIRTPMNA 363 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I+G + + + + + +E I S +L ++ND+LD+SKIESGK+ L E Sbjct: 364 IVGMTAIATAH----MDDRKQVENCLRKITLSSKHLLGLINDVLDMSKIESGKLTLTTEQ 419 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTP 720 +SL E V ++++Q K+ N + + D + Q+ LN+LSNA +TP Sbjct: 420 ISLKEVVEGIVNIMQPQVKTKKQTFDIHVENILTENVWCDGIRLNQVLLNLLSNATKYTP 479 Query: 721 SGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 GG I +S + + + + ++V+D G+GM+ L++ + + + ++ + EG Sbjct: 480 EGGSIQLSLSEEKSPKGENYVRIYIKVKDNGIGMSPEFLKRIYESYSRADGARIHKTEGA 539 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GLG+ + K +VDA G I S P KGT ++F Sbjct: 540 GLGMAITKYIVDAMEGTIDIQSEPDKGTEFLLMF 573 >gi|120597472|ref|YP_962046.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1] gi|146294387|ref|YP_001184811.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32] gi|120557565|gb|ABM23492.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1] gi|145566077|gb|ABP77012.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32] gi|319427741|gb|ADV55815.1| sensor histidine kinase for anaerobic respiratory control, ArcS [Shewanella putrefaciens 200] Length = 1234 Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 88/250 (35%), Positives = 132/250 (52%), Gaps = 8/250 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ K + L AK+ AE + +KS+FLA +SHEIRTP+ AIIG ++ + Sbjct: 694 THKDITRQKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLT 753 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P Y+E A + S +L I+ND+LD SKIE+GK+ L P LD+ + A+ L Sbjct: 754 P-QQKDYLEKAGF---SAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNA 809 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 L A E+ + + IL D + Q+ +N+LSNA+ FT SG ++ + Sbjct: 810 LKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGEIELGCEDVGERD 869 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + L+ VRDTG+G++ + EK F Q S + GTGLGL ++K +V GK Sbjct: 870 HRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKM 929 Query: 793 YIFSTPAKGT 802 + S G+ Sbjct: 930 QVQSELGVGS 939 >gi|319404942|emb|CBI78544.1| sensor histidine kinase protein [Bartonella sp. AR 15-3] Length = 820 Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 110/393 (27%), Positives = 197/393 (50%), Gaps = 24/393 (6%) Query: 429 PQNGIEP--EDVDTRIN-KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 PQ GI E++ +I+ +R+ + L+ S+G+ + +G + +N ++SKL+ Sbjct: 432 PQGGITWLYENLTEKIDLERRYNTLIKIQGETLDKLSEGVVVFGTDGRLRLSNPSLSKLW 491 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 P + LE NH + + +Q + IT G ++ + S RI + Sbjct: 492 SLPHNLPVEGTHITELE-------NHCSALTIGEEWKQFTQFIT-GFAEKRDIYSGRIDL 543 Query: 546 KK--------LPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 K P S+ + LT ++++ L + EK +++F+ VS+E+ Sbjct: 544 KSGIIIDYTLTPLSNGQTMLTFANVTDTIHIARALQEKNEALEKADRLRNEFVQHVSYEL 603 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPLT IIGFS+++++Q FG N R EY YI ++L+IVND+LD++ +++G M Sbjct: 604 RTPLTNIIGFSDILRDQIFGS-TNERQKEYLGYIHSESGVLLNIVNDILDLATLDAGIMI 662 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716 L +PV + EA+++A++ V+ + + I + + + ++ + AD + QI +N+LSNAI Sbjct: 663 LDIKPVQIAEAMAQAVARVEERLHGRHITLLQNISPSLKFMSADATRLHQIFVNVLSNAI 722 Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 +F I T + ++ V + G + L++ K F +S G GL Sbjct: 723 NFATEKSTIEFCAD-TQDNYIVFSVHNEGSDIPTDILDRIFKRF--TSHSHHGGRAGAGL 779 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GL L K+ V+ + G+ IF+ KGT + FP Sbjct: 780 GLSLVKSFVELHNGRVEIFTGMGKGTTVRCFFP 812 >gi|288958191|ref|YP_003448532.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288910499|dbj|BAI71988.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1138 Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 107/411 (26%), Positives = 187/411 (45%), Gaps = 46/411 (11%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R +++E +L +I++ ++GI +G+I + N A +F + +++ + Sbjct: 282 REQGKELEATNARLSAIVDTAAEGIITTRPDGVIEAANPAAHAIFRHAPGELVGRSVVEL 341 Query: 501 LEQNTPSVMNHYLTEIL-------------SLDLRQTLEKITLG-STKEEKL-LSLRIII 545 L + L EI ++ LR ++ G S K E L+ + + Sbjct: 342 LPADRREDAARTLDEIAHGRRHLDPTARGEAIALRPAVDGEAGGESGKTESFPLAYSMAL 401 Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 K Y+ + D++E K+ ++ L AK+ AE K +FLA +SHEIRTP+ +IG Sbjct: 402 VKTAAGPLYAAILRDLTEEKRLEHTLRDAKEQAEDGQRIKMEFLATMSHEIRTPMNGVIG 461 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPV 662 + ++ + YA I S +L ++ND+LD SKI++G++ L FE V Sbjct: 462 MAGLLLDTAL----QADQRGYAETIRDSAESLLVVINDILDFSKIDAGRLELEIGEFELV 517 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIP-----RILADLRSVKQIALNILSNAIH 717 L E+V+E ++ + + A+ +P +L D ++QI LN+ NA+ Sbjct: 518 PLVESVAEILA-------PRAVAKGLDLASFVPPGLRGTLLGDAGRLRQILLNLAGNAVK 570 Query: 718 FTPSGGQIII---------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 FT SG I+ + V VRDTG+G+ + + F Q+ +S Sbjct: 571 FTDSGSVTILLNEEAPIDNDSGDGGGVRVRFEVRDTGIGIPEEDRPRLFTMFSQVDSSPA 630 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL---YDTSHP 816 R GTGLGL + K + + G+ + S P G++ + PL +HP Sbjct: 631 RRHGGTGLGLAICKRLTELMGGRIGLDSHPGTGSVFWVSVPLKRGAGGAHP 681 >gi|304310910|ref|YP_003810508.1| sensory transduction histidine kinase [gamma proteobacterium HdN1] gi|301796643|emb|CBL44855.1| sensory transduction histidine kinase [gamma proteobacterium HdN1] Length = 1161 Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 89/268 (33%), Positives = 140/268 (52%), Gaps = 27/268 (10%) Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 K P S Y ++ D++E EK ++ AE+ + KS FLA +SHEIRTP+ +IG Sbjct: 619 KAQPDSVNYEGSLIDVTE-GVEKEIAQREREAAEQATQAKSAFLATMSHEIRTPMNGVIG 677 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 +E+++ PL + + Y N I SG ++ ++ND+LD SKIESGK L E +SLD Sbjct: 678 MTELLRET---PL-DLQQTGYVNTIHNSGMALVSLINDILDYSKIESGK--LEVESISLD 731 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIP-----------RILADLRSVKQIALNILSN 714 L+ L + + S + N+ RI++D ++QI LN LSN Sbjct: 732 --------LMALIDECAAVFAQQSISKNLGLYVDIDPQINDRIISDPARIRQILLNFLSN 783 Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 A FT +G + I ++ + + VRDTG+G++ + EK + F Q S + GT Sbjct: 784 AFKFTETG-SVRIRADSLADGRIRIGVRDTGIGLSQEQQEKLFQSFSQAEVSTTRKYGGT 842 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GLGL ++K + + G+ + S KG+ Sbjct: 843 GLGLAISKRLAELMGGEVGVISESGKGS 870 >gi|170077877|ref|YP_001734515.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] gi|169885546|gb|ACA99259.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] Length = 1208 Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 128/241 (53%), Gaps = 8/241 (3%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q N L ++ A S KS FLA +SHEIRTP+ I+G +E+++ + NP+ + Sbjct: 541 QNINDLVEGREAALAASRLKSSFLANMSHEIRTPMNGILGIAELLQTTQL----NPQQQD 596 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + + +S N +L ++ND+LD SK+E+G+M L P+ + + V L+ + A K++ Sbjct: 597 FIKTLSQSANHLLYVINDILDFSKLEAGEMRLESVPLQIIDCVESVAELLAIQAQTKQVE 656 Query: 686 IRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---RV 741 + T+ + + D ++QI N++ NAI FT G +I + +E +L V Sbjct: 657 LITTIDPQLGGTVTGDSMRLRQILTNLVGNAIKFTHRGSVVIRALPMAEDEASVLVKFEV 716 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ + K + F Q+ S GTGLGL +AK +V G + S+P +G Sbjct: 717 IDTGIGIDKADQAKLFRSFSQVDPSTTREYGGTGLGLAIAKHLVSLMAGDIGLESSPGQG 776 Query: 802 T 802 + Sbjct: 777 S 777 >gi|17227678|ref|NP_484226.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17135160|dbj|BAB77706.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 715 Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 134/241 (55%), Gaps = 11/241 (4%) Query: 557 TMHDISEWKQ---EKNKLSHAKKIAEKESSH----KSDFLARVSHEIRTPLTAIIGFSEV 609 T DI E KQ E+ +L ++ A E+ K +FLA +SHE+RTPL AI+G+S++ Sbjct: 301 TCTDIHEQKQILEERARLLELEQTARAEAETANRIKDEFLAVLSHELRTPLNAILGWSKL 360 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 ++ ++ P R + I+R+ L + ++ DLLDIS+I GK+ ++ V+L + Sbjct: 361 LQERKLDP---TRTFQALATIERNATLQVQLIEDLLDISRILQGKLVINITKVNLVTVIL 417 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 A+ ++L A K I + T+F NI +++ D ++Q+ N+LSNA+ FTP+GG+I ++ Sbjct: 418 AALETMRLAAESKLIQVLTNFPPNIGQVMGDSARLQQVVWNLLSNAVKFTPNGGKIEVTL 477 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 I+ V DTG G+ L F Q +S R G GLGL + + +V+ + Sbjct: 478 DKMEGYAQIV-VSDTGKGIQPEFLPYVFDYFRQADSSSTRRFGGLGLGLAIVRKIVEIHG 536 Query: 790 G 790 G Sbjct: 537 G 537 >gi|159026319|emb|CAO88896.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 641 Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 84/248 (33%), Positives = 132/248 (53%), Gaps = 8/248 (3%) Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 W +E + +++ AE S K+ FLA SHE+RTPL IIG + + + Sbjct: 377 WGEE---IVKSRQEAENASQLKNQFLANTSHELRTPLNGIIGSIRCVMDGFCNSEEEEK- 432 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 EY D++ +L+I++D+L I+KIE+GK+++ EPV L + ++E +SL K Sbjct: 433 -EYLQQADKAAVHLLEIIDDILSIAKIEAGKLSVDPEPVDLHQIINEVVSLQTASLQGKH 491 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + + F P + AD +KQ+ LN++SN+I FT +G +I TH + I+ + D Sbjct: 492 LKLNLLFCPENPIVYADPTKLKQVILNVISNSIKFTETGTISLI--THLEYPQAIITIVD 549 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGT 802 TG+G+ + K +PF I S + GTGLGL ++K + G I S GT Sbjct: 550 TGIGIDPQQQLKLFRPFVMIDGSTTRKFSGTGLGLAISKNFMKVMGGDITISSQGQGLGT 609 Query: 803 LIEIIFPL 810 +EII PL Sbjct: 610 TVEIILPL 617 >gi|254413818|ref|ZP_05027587.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196179415|gb|EDX74410.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1229 Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 121/206 (58%), Gaps = 4/206 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +FLA +SHE+R+PL I+G++++++ ++F P + + I+R+ + + +V+DL Sbjct: 857 KDEFLAILSHELRSPLNPILGWTKLLRTRQFDPAATDKALAT---IERNATIQIQLVDDL 913 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+++I GK+ L V L A+ AI VQL A K I I+ F + + D + Sbjct: 914 LDVARILRGKVVLTRHRVDLAIAIKAAIETVQLAAEAKSIQIQPHFIGKVGLVEGDSGRL 973 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +Q+ N+LSNA+ FTPSGGQ+ + T T +E + V+DTG+G++ L F Q Sbjct: 974 QQVVWNLLSNAVKFTPSGGQVEV-TLATVDEFAQITVKDTGIGISADILPHIFDYFRQAD 1032 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMG 790 +S + G GLGL +A+ +VD + G Sbjct: 1033 SSMTRQFGGLGLGLAIARHLVDLHGG 1058 >gi|311748276|ref|ZP_07722061.1| PAS domain-containing protein [Algoriphagus sp. PR1] gi|126576771|gb|EAZ81019.1| PAS domain-containing protein [Algoriphagus sp. PR1] Length = 1140 Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 85/256 (33%), Positives = 140/256 (54%), Gaps = 9/256 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE--VIKNQR 614 DIS K + K+ AK+ AE+ + +K+ L+ +SHEIRTPL I+G +E ++ NQ Sbjct: 891 VFRDISSKKAIEQKMRDAKEKAEQANRYKTSMLSNISHEIRTPLNGILGGTEHIMMMNQD 950 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 NP + + I +SG +L +N +LD++KIE+ KM + + ++E + I+ Sbjct: 951 -----NPILLSQLDIIQQSGERLLSTINSILDMAKIEANKMQVVYSEADINEFLKSVIAP 1005 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 ++ A +K + + T F + D R ++ I N++SNAI +T GG I ++ N Sbjct: 1006 LKNLALKKGLKLHTEFLQESFKGNIDKRFLEMIINNLVSNAIKYTDQGG-INVAVDKKKN 1064 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +++ V D+GVGM+ L KA +PF Q EGTGLGL + K+++ G+ +I Sbjct: 1065 -NLLISVEDSGVGMSEEFLNKAFQPFEQESTGNDRLYEGTGLGLNITKSLMALLNGEIHI 1123 Query: 795 FSTPAKGTLIEIIFPL 810 S GTL+ + PL Sbjct: 1124 QSVKNSGTLVTLEIPL 1139 >gi|310823304|ref|YP_003955662.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309396376|gb|ADO73835.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 1062 Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 139/246 (56%), Gaps = 16/246 (6%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ + +L AK+ AE+ + K +FLA +SHEIRTP+ AIIG +++ + G+P Sbjct: 374 RRSEEELRQAKESAEEANRAKGEFLANMSHEIRTPMNAIIGMTQLALDA-----GSPE-- 426 Query: 625 EYANYI---DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 E ++I RS +L I+ND+LD SKI++G++ + PVSL+E +S + A + Sbjct: 427 EKRDFIVKASRSAQSLLGIINDILDFSKIDAGRLEIETVPVSLNELISGLADVFASAAQD 486 Query: 682 KRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEE 736 K I + ++P LA D ++QI N++SNA+ FTP+ G++++ S Sbjct: 487 KGIELLFDVDASLPAALAGDPLRLRQILQNLISNALKFTPA-GEVVVRVEKVAELASGVA 545 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 VRDTG+G+ +L + + F Q +S + GTGLGL ++K +V+ G+ + S Sbjct: 546 CRFSVRDTGIGIAAEQLPRLFQSFFQTDSSVTRKYGGTGLGLAISKRLVELMGGRIGVDS 605 Query: 797 TPAKGT 802 P +G+ Sbjct: 606 QPGQGS 611 >gi|186894112|ref|YP_001871224.1| hybrid sensory histidine kinase BarA [Yersinia pseudotuberculosis PB1/+] gi|186697138|gb|ACC87767.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis PB1/+] Length = 924 Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 84/238 (35%), Positives = 129/238 (54%), Gaps = 8/238 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ S KS+FLA +SHE+RTPL +IGF+ Q P +Y Sbjct: 277 ELGLAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFTR----QTLKTSLTPTQTDYLQT 332 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RS N +L I+ND+LD SK+E+ K+ L P SL + E I L+ A+EK + + Sbjct: 333 IQRSANNLLCIINDVLDFSKLEADKLILEHIPFSLRGTLDEVIILLAHTAHEKGLELTLH 392 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVR--DTG 745 N++P ++L D ++QI N+L NAI FT G I++ ++++V L V DTG Sbjct: 393 INNDVPDQVLGDAMRLQQIVTNLLGNAIKFTEEGNIDILVVVKAIASQQVTLMVEIHDTG 452 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G++ + + + F Q S R GTGLGL + + +V G S + G++ Sbjct: 453 IGISESQQAQLFQAFRQADASTSRRHGGTGLGLVITERLVKEMGGNISFQSQMSCGSI 510 >gi|157737045|ref|YP_001489728.1| two-component sensor histidine kinase [Arcobacter butzleri RM4018] gi|157698899|gb|ABV67059.1| two-component sensor histidine kinase [Arcobacter butzleri RM4018] Length = 765 Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 80/235 (34%), Positives = 137/235 (58%), Gaps = 11/235 (4%) Query: 573 HAKKIAEKESSH----KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 H KIA +++ + KS FLAR+SHE+RTPL AI+GF+ ++K + + E N Sbjct: 304 HQLKIAMEDAKNANQAKSIFLARMSHELRTPLNAILGFANILK-KSMNATNQEK--ENLN 360 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +SG +L+I+N++L++SKIE+GK+ ++ + E + E + L K + Sbjct: 361 IIKKSGEHLLNIINEILELSKIEAGKIEINPKNFDFCELIKEIEDIFALRCKSKNLKFTI 420 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 + NN+P+ + AD + ++QI +N+L N++ FT + GQI ++ ++ N ++ V+DTG+G Sbjct: 421 NQTNNLPKFIKADEQRLRQILINLLGNSLKFT-NEGQIFLN-IYSLNNKLFFEVKDTGIG 478 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + EK KPF Q+ + +GTGLGL + K ++ G Y+ S KG+ Sbjct: 479 IDLKNQEKIFKPFEQVKLDNYTQ-QGTGLGLAITKELIALMGGTIYVKSQINKGS 532 >gi|239907263|ref|YP_002954004.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797129|dbj|BAH76118.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 869 Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 81/268 (30%), Positives = 133/268 (49%), Gaps = 14/268 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S K+ + L A +AE S KS+FLA +SHEIRTPL ++G ++++ PLG Sbjct: 467 DVSALKRIEGDLRRAMVVAETASQSKSEFLANISHEIRTPLNGVLGMLQLLET---APLG 523 Query: 620 NPRYIEYANYID---RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 E A Y+ + G + ++ D+LD S +E+G M + PV + + ++ + + Sbjct: 524 R----EEAGYVTTALKCGRGLTRVLGDILDFSLLEAGAMVIKSTPVDVRDVTADVLGALS 579 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHT 732 + + I A ++P R+L D ++QI N++ NAI FT +G I +++ Sbjct: 580 IECRARGIDAGLVVAPDVPARVLTDGARLRQILFNLVGNAIKFTQAGSVRLDIALASQRG 639 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++ V DTG+GM +L+ +PF Q S R GTGLGL + K ++ G Sbjct: 640 QAAVLLFTVADTGIGMPEEKLDDVFEPFTQADGSLTRRFGGTGLGLGIVKRLLTLLGGFL 699 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 + S GT I+ P P D + Sbjct: 700 AVESRVGVGTRIDFSLPCKLEQAPKDAV 727 >gi|34498958|ref|NP_903173.1| sensor/response regulator hybrid [Chromobacterium violaceum ATCC 12472] gi|34332887|gb|AAQ61164.2| probable sensor/response regulator hybrid [Chromobacterium violaceum ATCC 12472] Length = 1229 Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 79/250 (31%), Positives = 135/250 (54%), Gaps = 10/250 (4%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++ ++ + LS AK A+ + KS+FLA +SHEIRTP+ AI+G ++I+ Sbjct: 479 RDVTLEREREAWLSQAKSAADSANRAKSEFLANMSHEIRTPMNAILGMLQLIQQTGL--- 535 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N R +YA+ + +L I+ND+LD S++E GK+ L P S+D+ + + ++ Sbjct: 536 -NARQADYADKASSAARTLLGILNDILDFSRVEVGKLTLAPHPFSIDKLLRDVGVIMSAN 594 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 +K + + +P I AD ++QI +N+ NAI FT G+++I+ +E Sbjct: 595 VGDKDVEVLFDIDPELPDWISADSLRLQQILINLSGNAIKFTER-GEVVIAARLARRDEA 653 Query: 738 ILR----VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 LR VRDTG+G+ L++ + F Q S R G+GLGL +++ +V G+ Sbjct: 654 GLRIAFSVRDTGIGIAPEHLQRIFEGFSQAEASTARRYGGSGLGLAISQRLVALMGGQLT 713 Query: 794 IFSTPAKGTL 803 + S KG++ Sbjct: 714 VESEEGKGSV 723 Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust. Identities = 41/180 (22%), Positives = 78/180 (43%), Gaps = 9/180 (5%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R R+ +L +I+E++ D I +G I S NR + GYP ++ L KP F Sbjct: 70 RRKYRQANARQAELAAIVESSHDAIIGCAADGRIDSWNRGAENMLGYPAQETLGKPLENF 129 Query: 501 LEQNTPSVMNHYLTEILSLDLRQT-LEKITLGSTKEEKLLSLRIIIKKLPFS---SCYSL 556 ++ P + +LS+ QT LE I ++ + L + + + S +L Sbjct: 130 VKLPEP---DDRAPPLLSVQREQTPLELICFLHDRDGRRLDAAVTMSPVKTSDKQGGVAL 186 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DI+E + + E++ ++ + RV ++ + A G++ +I R G Sbjct: 187 IIRDITELVANERDIRKLNASLEQQVEQRTAEI-RVFSALQNAILANAGYA-IIATDRSG 244 >gi|212634252|ref|YP_002310777.1| PAS domain-containing protein [Shewanella piezotolerans WP3] gi|212555736|gb|ACJ28190.1| PAS domain protein [Shewanella piezotolerans WP3] Length = 1572 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 91/265 (34%), Positives = 143/265 (53%), Gaps = 22/265 (8%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS------EVIKNQ 613 +I+E K + +L+ A +IA+ + K +FLA +SHEI TP+ AIIG + E+ K Q Sbjct: 816 NINESKALQRELASAIEIADDANRAKGEFLANMSHEIHTPMNAIIGMTHLALKTELTKQQ 875 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 YIE ++ RS +L I+ND+LD SKIE+GK+++ L++ + + I+ Sbjct: 876 H-------SYIEKSH---RSAQSLLGIINDILDFSKIEAGKLDIETIQFRLEDVLEDIIN 925 Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-ISTTH 731 V + EK + + IP IL D + QI N+ +NA+ FT G II +S Sbjct: 926 FVGIKVAEKELELLFDIDPTIPAILQGDPLRLAQILTNLANNAVKFTEHGSVIIGVSIEK 985 Query: 732 TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 +++EV L+ V DTG+GMT + + K F Q S + GTGLGL + K + D Sbjct: 986 LTDDEVTLKFSVTDTGIGMTAEQQQGLFKAFSQADASTTRKYGGTGLGLAICKNLADLMG 1045 Query: 790 GKFYIFSTPAKGTL--IEIIFPLYD 812 G+ + S KG++ E +FP+ + Sbjct: 1046 GEIGVSSEVNKGSIFYFESVFPIVE 1070 >gi|190575485|ref|YP_001973330.1| putative two-component histidine kinase/response regulator fusion protein [Stenotrophomonas maltophilia K279a] gi|190013407|emb|CAQ47041.1| putative two-component histidine kinase/response regulator fusion protein [Stenotrophomonas maltophilia K279a] Length = 1168 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 133/242 (54%), Gaps = 10/242 (4%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S+ K+ FLA + HEIRTP+T ++G SE++ PL +P+ Y I Sbjct: 791 HKQELAEQASAAKTRFLANLGHEIRTPMTGVLGMSELLLAS---PL-DPQQRGYTQSIRH 846 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 +G +L ++ND LD+++IESG++ L +P +L + + +L+ A +K +R + N Sbjct: 847 AGEHLLHLINDALDLARIESGRLELQSKPFALSCLLQDLAALMGPLAAQKG--LRFTLDN 904 Query: 693 NIPRIL---ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 +P L D V+QI LN+LSNA+ FT G + + + + VRDTG G++ Sbjct: 905 QLPPGLQATGDAMRVRQILLNLLSNAVKFTSRGTITLHARSDGELRALHFEVRDTGPGIS 964 Query: 750 NYELEKAMKPFGQIPNSQ-QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + ++ + F Q ++ + G+GLGL + + + A G+ + S +GT + Sbjct: 965 QEQQQRLFRRFEQADGARTAAQYGGSGLGLAICRELAQAMQGRIQVESQLGRGTCFGVTL 1024 Query: 809 PL 810 PL Sbjct: 1025 PL 1026 >gi|156975786|ref|YP_001446693.1| hybrid sensory histidine kinase BarA [Vibrio harveyi ATCC BAA-1116] gi|156527380|gb|ABU72466.1| hypothetical protein VIBHAR_03530 [Vibrio harveyi ATCC BAA-1116] Length = 932 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 85/252 (33%), Positives = 139/252 (55%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQ-TDYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L+I+ND+LD SK+E+GK+ L P E++ E I+L A+EK + I Sbjct: 331 TIEKSANNLLNIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKGLEITL 390 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDT 744 IP+ ++ D ++QI N++ N+I FT G + I + + E+ VRDT Sbjct: 391 KVDPKIPQGLVGDPLRIQQILTNLVGNSIKFTERGNIDISVEIRSQSGDSVELQFMVRDT 450 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTF 510 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 511 WFTVRLHSTEMP 522 >gi|242280724|ref|YP_002992853.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123618|gb|ACS81314.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 1083 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 82/263 (31%), Positives = 134/263 (50%), Gaps = 16/263 (6%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI------KNQRFGPL 618 ++ +L AK AE+ + K+ F A +SHEIRTP+ AI+GF+EV+ +Q G + Sbjct: 472 RERTAELEKAKDAAEEGARVKAAFTANMSHEIRTPINAILGFAEVVMQDSDLSSQTAGHV 531 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 G I S +L I+ND+LD+SK+ESGK L L A+++A+ ++ Sbjct: 532 GT---------ILSSAKSLLGIINDILDVSKMESGKFALEIVCFHLPNALADALRTLEHR 582 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A+EK + + + N+ R + D ++Q+ LN+ NA+ FT G I + E + Sbjct: 583 ADEKSLKLALDYDVNLSTRFMGDPTRLRQVVLNLAGNAVKFTEHGSITIGVEVGDAPEIL 642 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V DTG+GMT ++ K F Q S R GTGLG ++K +V+ G+ ++ S Sbjct: 643 HFFVSDTGIGMTEKQVAKVFDSFSQADESTTRRFGGTGLGTTISKQIVEMMDGEIWVESQ 702 Query: 798 PAKGTLIEIIFPLYDTSHPHDCI 820 KG++ + + C+ Sbjct: 703 LGKGSVFHFTVRMPEADEGGQCL 725 Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust. Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 4/139 (2%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 K+E E+ +++ + GI +I +G ++ N S+LFGY ++++ + + + N Sbjct: 215 KLEDEIRANEAMIATSPSGIIVIEDDGQVVQFNTVASQLFGYSKDEVVGQNVKILMPPNI 274 Query: 506 PSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDI 561 S N ++ L R+ + + G K+ L L + I K+ F + DI Sbjct: 275 ASRHNSFIKRHLDTGERRVIGVGREVEGQRKDGSLFPLHLAIGKMEFQQRVRFIGILTDI 334 Query: 562 SEWKQEKNKLSHAKKIAEK 580 S K + L + E+ Sbjct: 335 SALKTAEEGLRQKHRAVEE 353 >gi|145300783|ref|YP_001143624.1| two-component system hybrid sensor histidine kinase/response regulator protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142853555|gb|ABO91876.1| two-component system hybrid sensor histidine kinase/response regulator protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 890 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 133/243 (54%), Gaps = 11/243 (4%) Query: 566 QEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 Q KN+ L A ++AE + KSDFLA +SHEIRTP+ AI+G + + R +P+ Sbjct: 140 QTKNQELEQAYELAESATRAKSDFLANMSHEIRTPMNAILGMAHLALQTRL----DPQQA 195 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +Y I RS +L I+ND+LD SKIE+GK++L LD + +LV A K I Sbjct: 196 DYVGKIQRSAQHLLGIINDILDFSKIEAGKLDLEQIEFDLDHVLENLATLVGEKAEAKGI 255 Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--EEVILR- 740 + + + +L D + QI +N +NA+ FT G+I++ T +EV+L Sbjct: 256 ELLFEVDHQLDTLLYGDPLRLGQILINYANNAVKFTEQ-GEILVKVTCLEKLPKEVLLHC 314 Query: 741 -VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V+DTG+GM+ + ++ + F Q +S + GTGLGL +++ + G+ + S P Sbjct: 315 SVQDTGIGMSQEQQQRLFQSFQQADSSTTRKYGGTGLGLAISRELAALMGGEVGVQSEPG 374 Query: 800 KGT 802 KG+ Sbjct: 375 KGS 377 >gi|262196966|ref|YP_003268175.1| integral membrane sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] gi|262080313|gb|ACY16282.1| integral membrane sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] Length = 798 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 85/248 (34%), Positives = 135/248 (54%), Gaps = 15/248 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 QE + L A + AE + KS FL +SHE+RTPL A+IG +E++ + + E Sbjct: 545 QELSSLERAAEAAEAANRAKSRFLNNMSHEMRTPLNAVIGMTELLIDTEL----DDEQRE 600 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 YA + +G +L +++D+LD+++IESG M L P SL A+ +SL+ A E + Sbjct: 601 YAEVVTEAGVALLALIDDVLDVARIESGTMTLEEAPFSLRAAIGGVMSLLDARACEAGLR 660 Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------EV 737 + A ++P +L D ++Q+ LN+++NAI FT GG + ++ + E V Sbjct: 661 FASEVAEDVPDLLIGDAGRLRQVLLNLVNNAIKFTEQGG-VDLAVARAAEESEAPGDGSV 719 Query: 738 ILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +LR VRDTG+G+ + K F Q S R GTGLGLP+A +V G+ + Sbjct: 720 VLRFSVRDTGIGVPEDKQAVIFKVFEQADMSLSRRYGGTGLGLPIAVELVQLMGGELALE 779 Query: 796 STPAKGTL 803 S P +G++ Sbjct: 780 SEPERGSV 787 >gi|119469502|ref|ZP_01612406.1| putative two-component member protein [Alteromonadales bacterium TW-7] gi|119447037|gb|EAW28307.1| putative two-component member protein [Alteromonadales bacterium TW-7] Length = 1107 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 135/252 (53%), Gaps = 6/252 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K+ + KL AK IAE+ + K F+A +SHEIRTP+ +IIGFS+++ + PL Sbjct: 514 DITERKEYEEKLEKAKLIAEEAAQAKQSFMANMSHEIRTPMNSIIGFSDLLMDT---PLN 570 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N + ++ ++ + +L ++N++LD +K+E GK+ + SL + IS L A Sbjct: 571 NEQQ-KHLVTVNNAARSLLRLLNEVLDSAKLERGKLTIEAVHFSLKPVIDSIISTFWLEA 629 Query: 680 NEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +K +++ + ++ D ++QI N++ NAI FT G + I+ + T N + Sbjct: 630 KKKDLILHLTIKESVQNTYYGDPDRLRQILTNLIGNAIKFTEHGS-VTITVSTTQNGHLF 688 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V+DTG+G+ + +PF Q + R GTGLG ++K +V+ G + S Sbjct: 689 FEVQDTGIGIEKDRVSAIFQPFVQADGTTTRRFGGTGLGTTISKQLVELMGGTINLVSEV 748 Query: 799 AKGTLIEIIFPL 810 KGT PL Sbjct: 749 NKGTCFYFSLPL 760 >gi|332524438|ref|ZP_08400650.1| signal transduction histidine kinase-like protein [Rubrivivax benzoatilyticus JA2] gi|332107759|gb|EGJ08983.1| signal transduction histidine kinase-like protein [Rubrivivax benzoatilyticus JA2] Length = 1021 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 135/233 (57%), Gaps = 8/233 (3%) Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 IA +ES KS FL+R+SHE+RTPL A++GF+E++ G+ R + + +G Sbjct: 643 IALRESQAKSRFLSRMSHELRTPLNAVLGFTELLLADSGSRDGSWR--RHLQAVRGAGQQ 700 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 +L +V+D+LD++ +E G+M + E V+L +A+ LV+ ++ + + + I Sbjct: 701 LLALVDDVLDLASLEGGEMRVASERVALRGLALQALELVEPLRGQRDVTVIAGTLDGI-- 758 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 +LAD ++Q+ N+L+NAI + GG + I + +V++ V D+G GMT +L Sbjct: 759 VLADAVRLRQVLQNLLTNAIKYNRDGGLVEIESRRRDG-KVLVSVADSGRGMTEQQLRHL 817 Query: 757 MKPFGQIPNSQQIRG-EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +PF ++ ++ G GTG+GL + K++V+ G + STP GT++E++ Sbjct: 818 FEPFNRLGLERE--GIPGTGIGLVIVKSLVERMGGSISVRSTPGVGTVVELVL 868 >gi|158339053|ref|YP_001520230.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158309294|gb|ABW30911.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] Length = 1038 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/255 (32%), Positives = 141/255 (55%), Gaps = 27/255 (10%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++L AK AE + KS FLA +SHEIRTP+ A+IG + ++ N PL + ++ Sbjct: 274 SELQAAKHEAEAANQAKSQFLANMSHEIRTPMNAVIGMTGLLLNT---PL-EAQQQDFVE 329 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I SG+ +L ++ND+LD SKIE+GK++L +P + + EA+ +V A+EK + Sbjct: 330 TIRSSGDALLTLINDILDFSKIEAGKLDLEQQPFEIRTCIEEALLIVASKASEKN--LEL 387 Query: 689 SFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---------TSNEE 736 ++ N P IL D+ ++Q+ +N+L+NA+ FT G ++ ++ S+ E Sbjct: 388 AYLINPPTPTAILGDITRLRQVLVNLLNNALKFTGEGEVVVYVSSKPIESKDLDAESDLE 447 Query: 737 VILR---------VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 VI V+DTG+G+ +LE+ K F Q+ S + GTGLGL ++K + + Sbjct: 448 VIAEATPYEIQFDVKDTGIGIPPDKLERLFKSFSQVDASTTRKFGGTGLGLAISKQLSEL 507 Query: 788 NMGKFYIFSTPAKGT 802 GK ++ S + G+ Sbjct: 508 MGGKIWVSSEVSVGS 522 >gi|332525738|ref|ZP_08401885.1| periplasmic sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332109295|gb|EGJ10218.1| periplasmic sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 1206 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 131/245 (53%), Gaps = 10/245 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + + + A+ AE + KS ++ +SHE+RTPL +I+G++++++ P P Sbjct: 732 QAAREEADRARGHAEAANRAKSRYITTISHELRTPLNSILGYAQLLEEDEAMP---PHRR 788 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I R G+ +L ++ LDI++IESGK+ L P+ + ++E + +L A + + Sbjct: 789 QAVAVIRRGGDHLLSLIEGTLDIARIESGKLALDVRPMRFADGLAEIARMFELQAAGRGL 848 Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 R + +P ++ AD + ++QI +N+L NAI FT + GQ+ + H E + D Sbjct: 849 AFRFAVDGRLPAVVRADEKRLRQILINLLGNAIKFTQA-GQVTLRVAH-QREMARFEIED 906 Query: 744 TGVGMTNYELEKAMKPF--GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 TG GMT EL + +PF G + Q + TGLGL +A+ + + G+ + S P +G Sbjct: 907 TGPGMTADELARVFEPFERGSAASGQSV--GSTGLGLTIARMLCELMGGEMTVASEPGRG 964 Query: 802 TLIEI 806 T I Sbjct: 965 TTFRI 969 >gi|332532699|ref|ZP_08408575.1| hypothetical protein PH505_ah00830 [Pseudoalteromonas haloplanktis ANT/505] gi|332037915|gb|EGI74364.1| hypothetical protein PH505_ah00830 [Pseudoalteromonas haloplanktis ANT/505] Length = 888 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 133/209 (63%), Gaps = 7/209 (3%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSE-VIKNQRFGPLGNPRYIEYANYIDRSGNL 636 AE+ + KS FLA +SHEIRTPLTAI+GF+E ++ N + + N + ++ + I R+ Sbjct: 402 AEQANQLKSRFLANMSHEIRTPLTAIMGFTEQLLHNDK---VANDK--QHLSTILRNSKH 456 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 +L+++N++LD+SKIE+ K+ + +++ + V + S++Q A EK++ + + +PR Sbjct: 457 LLELINNILDLSKIEAEKLAVDLSALNVVQLVHDIESIIQPLAQEKQLTLNIDYQLPLPR 516 Query: 697 -ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 I +D+ +KQI +NI +NA+ FT +G I +++++ ++DTG+GM+ +++E+ Sbjct: 517 TIYSDVTRLKQILINIANNAVKFTENGSVSICVHYLQASQKLEFVIKDTGIGMSEHQIER 576 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 KPF Q + R GTGLGL ++K + Sbjct: 577 VFKPFEQADATTTRRFGGTGLGLCISKNL 605 >gi|239628811|ref|ZP_04671842.1| two-component system protein sensor histidine kinase [Clostridiales bacterium 1_7_47_FAA] gi|239518957|gb|EEQ58823.1| two-component system protein sensor histidine kinase [Clostridiales bacterium 1_7_47FAA] Length = 984 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 86/265 (32%), Positives = 134/265 (50%), Gaps = 9/265 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H + E + N A K+A ++ KS+FL+R+SH+IRTP+ I G +E+ P Sbjct: 458 HQLEERTEMLNTALEAAKLA---NAAKSEFLSRMSHDIRTPMNVIAGMTEIADAHLQDP- 513 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 R + + I S + +L ++ND+LD+S+IESGK+++H P+SL + V E I + Sbjct: 514 --ERVKDCLHKIRLSSHHLLGLINDVLDMSQIESGKVSIHMAPLSLPDLVREIIMITLPN 571 Query: 679 ANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 KR + N +D ++QI LN+LSNA FTP GQI+ N Sbjct: 572 VRAKRQKFKVHLMNVRQEHFYSDELRLRQILLNLLSNASKFTPENGQIVFEVEQLENNAA 631 Query: 738 I-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + V DTG G+ E + F + +S+ R EG+GLGL + K + + G + S Sbjct: 632 LSFTVSDTGPGIKEDFQEHIFETFARERDSRTDRIEGSGLGLAIVKRLTELMDGDIILGS 691 Query: 797 TPAKGTLIEIIFPLYDTSHPH-DCI 820 P +GT + P+ P +CI Sbjct: 692 LPGQGTTFRVTLPMQHIPVPPIECI 716 >gi|94263810|ref|ZP_01287616.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93455821|gb|EAT05988.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 970 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 97/354 (27%), Positives = 175/354 (49%), Gaps = 20/354 (5%) Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 ++S N A ++ G V D++ K L++N PS+ L + + R ++ Sbjct: 510 MISANPATEEITGVKVIDVVGKT----LDENFPSLREMNLPQGFAEVARSGEARVYEDVV 565 Query: 534 KEEKLLSLRIIIKKLPF---SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 ++ + +R + F + + +I+E K+ + +L AK+ A+ + KS FLA Sbjct: 566 YDDNWV-VRACFSVMAFPLPGNHVGIAFENITERKKAEEELRTAKQQADSATLAKSRFLA 624 Query: 591 RVSHEIRTPLTAIIGFSEV-IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 ++HE RTP+ A+I + + ++ + NPR +Y + R+G +L I+ND+LD SK Sbjct: 625 NMNHEFRTPMNAVINLTRLALEEEEL----NPRQRDYLGKVLRAGEDLLVIINDILDFSK 680 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIA 708 IE+GK+ L P L + + + + A++K I R A +P R++ D ++Q+ Sbjct: 681 IEAGKLELDPVPFGLRGLIDDVVRPLSPNAHDKAIKFRVELAEELPERLVGDATRLRQVL 740 Query: 709 LNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPN 765 N+ N I FT G ++ + ++V L V D+G+G++ E ++ +PF Q + Sbjct: 741 FNLADNGIKFTEQGEVLLKVQLLKRQGDQVTLAFMVSDSGIGISAAEQQRLGEPFSQADD 800 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY---DTSHP 816 S R GTGLGL + K ++ + + S P +G+ L DTS P Sbjct: 801 SISRRYGGTGLGLAITKQLLVLMGSELEVESVPGEGSNFAFTIQLALADDTSTP 854 >gi|117926280|ref|YP_866897.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610036|gb|ABK45491.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 968 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/254 (30%), Positives = 142/254 (55%), Gaps = 9/254 (3%) Query: 563 EWKQEKNKLSH--AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 E ++E+ +L+ AK+ AE S KS+FLA +SHEIRTP+ AI+G +E+++ Q Sbjct: 572 ELEREETELALRVAKERAEAASQAKSEFLAMMSHEIRTPMNAILGITELLQEQP----SK 627 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 +E+ ++G +L ++ND+L++S++E+G+ L P L E + +L++ A Sbjct: 628 KEQLEFLTVQAKAGQALLTLINDILELSRLEAGREQLQTAPFDLYELLRSVSTLLEPSAK 687 Query: 681 EKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K + + A + P + D R ++Q+ +N++ N I FT + G I IS +N + + Sbjct: 688 HKGLSVHLEIAEGLSPNWIGDERRLRQVLINLVGNGIKFT-NRGSIWISAQPMAN-GLEI 745 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 RV+D+G G+ +K + F Q+ ++ + GTGLGL + K ++D G+ + S P Sbjct: 746 RVKDSGAGINPRHHDKIFERFHQVDSTATRKHGGTGLGLAITKKLMDLMGGEIRMESQPD 805 Query: 800 KGTLIEIIFPLYDT 813 +G+ + PL + Sbjct: 806 QGSCFTLALPLSEA 819 >gi|238758178|ref|ZP_04619357.1| Signal transduction histidine-protein kinase barA [Yersinia aldovae ATCC 35236] gi|238703508|gb|EEP96046.1| Signal transduction histidine-protein kinase barA [Yersinia aldovae ATCC 35236] Length = 937 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 85/255 (33%), Positives = 137/255 (53%), Gaps = 12/255 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ Q P +Y Sbjct: 294 ELGLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTR----QTLKTSLTPTQTDYLQT 349 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RS N +L I+ND+LD SK+E+ K+ L P SL A+ E + L+ A+EK + + Sbjct: 350 IQRSANNLLCIINDVLDFSKLEAEKLILEHIPFSLRGALDEVVILLAHTAHEKGLELTLH 409 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV--ILRVRDTG 745 N++P +++ D ++QI N+L NAI FT G I+++ ++++V ++ + DTG Sbjct: 410 VNNDVPEQVVGDAMRLQQIVTNLLGNAIKFTEQGNIDILVAVRAIASQQVTLVVEIHDTG 469 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G++ + + + F Q S R GTGLGL + + +V G S +G+ Sbjct: 470 IGISESQQAQLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVDRGS--- 526 Query: 806 IIFPLYDTSHPHDCI 820 F Y T +D I Sbjct: 527 -TFRFYITLDLNDTI 540 >gi|149277545|ref|ZP_01883686.1| sensory box histidine kinase/response regulator [Pedobacter sp. BAL39] gi|149231778|gb|EDM37156.1| sensory box histidine kinase/response regulator [Pedobacter sp. BAL39] Length = 656 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 86/269 (31%), Positives = 147/269 (54%), Gaps = 15/269 (5%) Query: 550 FSSCYSLTMHDISE-WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 S + +++I + ++ +KN + H+ AE ++ K+ FLA +SHEIRTPL ++IGFSE Sbjct: 250 LSGLVCIILYNIWKIYRYQKNLVYHSA-FAEHNAASKTSFLAGMSHEIRTPLNSVIGFSE 308 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 + + + E + I S ++LDIVN +LD SK E+GKM P + + Sbjct: 309 QLGQSKL----DDTQREQLDAITNSSKILLDIVNQVLDFSKFETGKMVFERAPFIPQDIL 364 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQII 726 E S + + A K I I SF + P + D +KQ+ +N+L NAI FT G++ Sbjct: 365 EEVFSTLSIQAVNKGISIAKSFDIS-PELSVKGDALRLKQVLINLLGNAIKFTKE-GEVT 422 Query: 727 ISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLA 781 I T +S+++ +I+ V+DTGVG++ + F Q+ ++Q+ + GTGLGL ++ Sbjct: 423 IKATVSSDKKDQIRLIVWVKDTGVGISKENVNMIFGEFSQVASAQKDASQKGTGLGLAIS 482 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 K +++ G + S KG++ + P+ Sbjct: 483 KKIIEQQGGYIRVTSEEGKGSVFKFSLPM 511 >gi|78187217|ref|YP_375260.1| PAS/PAC sensor signal transduction histidine kinase [Chlorobium luteolum DSM 273] gi|78167119|gb|ABB24217.1| PAS/PAC sensor signal transduction histidine kinase [Chlorobium luteolum DSM 273] Length = 896 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 108/373 (28%), Positives = 193/373 (51%), Gaps = 26/373 (6%) Query: 456 SILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYL 513 +I E+ D A +N G I + ++S FGY ++IL R+ ++ P + + Sbjct: 536 AIFESIQDVYAEVNLATGTIEEISPSISS-FGYTRDEILHRQSLDYYV---NPEERDRLI 591 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYSL-TMHDISEWKQEKNKL 571 + + + + E L + E +SL I +IK +P + TM DISE K+ + ++ Sbjct: 592 SALADMGSLRDFEAHFLTKSGEPITVSLAISLIKGVPDGLMKIVGTMRDISERKKHECQI 651 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 ++ K+DF++ VSHE+RTPL +I+GFS + + G L +E+ + I Sbjct: 652 QENIRL-------KNDFISSVSHELRTPLFSILGFSSTLLKES-GSLDPATRLEFTSIIH 703 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + ++ D+L IS+I+SGK F+PV + VS +++++ A EK I + Sbjct: 704 DESVRLSSLIEDILTISRIDSGKAKYSRQIFDPV---KPVSAVVAILRRQAEEKGIELVE 760 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + R++ D S+KQ+ +N+L NA+ FTP GG++ +S + + E V + V DTG+G+ Sbjct: 761 EKPDREHRVVFDQDSLKQVMMNLLGNALKFTPKGGRVKVSIS-GAEEMVSITVDDTGIGI 819 Query: 749 TNYELEKAMKPFGQ-IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + EK F + +P++ QI EGTGLGL + K +V+ G + S +G+ ++ Sbjct: 820 AASDHEKIFDRFYRSVPSAFQI--EGTGLGLAIVKDIVEMQGGSIGVQSELDRGSQFTVL 877 Query: 808 FPLYDTSHPHDCI 820 + + D + Sbjct: 878 LKRAEDAADEDVV 890 >gi|332701627|ref|ZP_08421715.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332551776|gb|EGJ48820.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 847 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 133/250 (53%), Gaps = 12/250 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++ KQ + +LS AK+ AE+ S KS+FLA +SHEIRTPL+ ++G +E+ Sbjct: 449 DMTRRKQIEAELSKAKEDAERASKAKSEFLANMSHEIRTPLSGMLGMTELAMMNEL---- 504 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P E+ SG +L I+ND+LD+SKIE+G+ NL + SL E I + + A Sbjct: 505 TPEVREHLQMARDSGKSLLAIINDVLDLSKIEAGRSNLEQKKFSLRELADSTIKSLAVSA 564 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--- 735 K + I + P +L D ++QI N++ NA+ FT G + +S T + + Sbjct: 565 KAKGLRIFHAVDTEAPDSLLGDPGRLRQILTNLIGNALKFTER-GTVTVSMTADAVDAPA 623 Query: 736 -EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++ LR V+DTG+G+ LE K F Q S GTGLGL ++K +V+ G+ Sbjct: 624 GKITLRTVVKDTGIGIPESMLEDIFKSFNQGVTSAHATYGGTGLGLTISKELVEMMGGRI 683 Query: 793 YIFSTPAKGT 802 + S G+ Sbjct: 684 WAESRMGHGS 693 >gi|298504148|gb|ADI82871.1| sensor histidine kinase, HAMP and PAS domain-containing [Geobacter sulfurreducens KN400] Length = 762 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 94/380 (24%), Positives = 192/380 (50%), Gaps = 21/380 (5%) Query: 436 EDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 E ++ R+ +R +++E+ +L +IL + ++GIA+ +R+G ++ N A +LF ++ Sbjct: 398 EFLERRVEERTAALQVEMGRLEAILTSMAEGIAVTDRDGRVILFNPAAQQLFEMVPHRVV 457 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 +P Q + ++T + + T+ ++ L + ++ ++L ++ + Sbjct: 458 GQPILDICNQGEFCRLVEHITSMGENRDQATVREVDLDARGKKLKVTLAPLVDGDGHFAG 517 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKN 612 +++ D++ AE+E K++F++ VSHE++TPLT+I G ++I + Sbjct: 518 VVMSVRDVT---------------AEEEVDRMKTEFISTVSHELKTPLTSIKGSLQLIVD 562 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + G + E R+ ++ +VND+LDI+KIESGKM P S E V ++ Sbjct: 563 KSRGFTDVEK--ELLGVCLRNTERLIRLVNDILDIAKIESGKMEFALSPHSPAELVEWSV 620 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 ++ +A E + + + ++P I D + Q+ N+++NA+ F+P G + IS + Sbjct: 621 RELEGFAREHGVTVVNEVSADLPAIYGDGDRLGQVLTNLIANAVKFSPRGAVVTISAEQS 680 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 N V + V+D G + + K K F QI + + + GTGLGL + K +V+ + G+ Sbjct: 681 DN-FVAVSVKDRGREIQWADRGKLFKRFQQIDSGDRRQHGGTGLGLAICKEIVERHHGRI 739 Query: 793 YIFSTPAKGTLIEIIFPLYD 812 + G + P+++ Sbjct: 740 FYSEGIGGGNVFTFTVPIHE 759 >gi|294508041|ref|YP_003572099.1| Conserved hypothetical protein containing ATP-binding region, ATPase-like [Salinibacter ruber M8] gi|294344369|emb|CBH25147.1| Conserved hypothetical protein containing ATP-binding region, ATPase-like [Salinibacter ruber M8] Length = 1263 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 127/247 (51%), Gaps = 6/247 (2%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ-----RFGPLGNPR 622 + +L AK+ AEK S KS FLA +SHEIRTPLT+I+GF+E I + R + + Sbjct: 1002 EQELVDAKETAEKMSRLKSAFLANISHEIRTPLTSILGFAEAIGGEVEGARRVEEVDHAS 1061 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +++ I++SG ++D + +L++SK+++G+M L EP+ L + A A+ Sbjct: 1062 LARFSSLIEQSGQRLMDTLTGVLNLSKLQAGEMTLDLEPIDLAAEAAAAAHEFAPQADGA 1121 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + + + + AD V+ + N+LSNAI +T GG + I T E +L V Sbjct: 1122 GVALELTEEDTAVWARADRSGVQIVLRNLLSNAIKYTEEGGTVWIR-ARTDGEHAVLEVE 1180 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+GM + + F Q EGTGLGL + K ++D G + + +G+ Sbjct: 1181 DTGIGMDPNTADVLFEAFKQASEGIGREYEGTGLGLTVTKEVLDQMDGAVAVETEQGEGS 1240 Query: 803 LIEIIFP 809 + P Sbjct: 1241 RFTVWLP 1247 >gi|327253391|gb|EGE65029.1| TMAO reductase sytem sensor TorS [Escherichia coli STEC_7v] Length = 904 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 87/250 (34%), Positives = 135/250 (54%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ ++ I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKDRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ +L V D+G Sbjct: 535 TAIADDVPTALMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRTDGEQWLLEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRIATAP 658 >gi|297521246|ref|ZP_06939632.1| hybrid sensory histidine kinase BarA [Escherichia coli OP50] Length = 583 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 114 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR----DHLNT 169 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 170 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 229 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 230 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 289 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 290 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 346 >gi|16330678|ref|NP_441406.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] gi|1653170|dbj|BAA18086.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] Length = 633 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/262 (30%), Positives = 142/262 (54%), Gaps = 17/262 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KNQRFGPLGNPRYI 624 Q + L+ AK+ A+ + K++FLA +SHE+RTPL AIIGFS+++ ++ P + Sbjct: 144 QAETTLTQAKEAADAANRAKTEFLASISHELRTPLNAIIGFSQLLHRDPSLAP-----HR 198 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I+RSG +L+++ND+L++SKIE+G+ L+ + + + +L QL A EK++ Sbjct: 199 PTLDIINRSGEHLLELINDILEMSKIEAGRTTLNEKIIDCHRLLDNLQALFQLRAQEKQL 258 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------- 736 L++ + +P I D ++Q+ +N+L+NAI FT GG + T+ + Sbjct: 259 LLKVERSPEVPEWIKTDGGKLRQVLINLLANAIKFTAQGGVTLKVKCLTAPQTDEGQGAS 318 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + V DTG G+ +E+++ PF Q + +G GLGLP+++ V G+ + Sbjct: 319 IWLHFLVSDTGPGIAAHEMDELFVPFAQTETGLK-SCQGNGLGLPISQKFVQLMGGQIQV 377 Query: 795 FSTPAKGTLIEIIFPLYDTSHP 816 S +G+ P+ + P Sbjct: 378 RSKVDQGSAFFFAIPVQVMAAP 399 >gi|332528042|ref|ZP_08404075.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332112615|gb|EGJ12408.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 521 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 129/229 (56%), Gaps = 10/229 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K++FL+R+SHE+RTPL A++GF++++++ P + I +G +L ++ DL Sbjct: 297 KTEFLSRMSHELRTPLNAVLGFAQLLESDPVEPPSESQQ-RRIKLIREAGEHLLQMIGDL 355 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP--RILADLR 702 LD+++IESG + L V L EA+++V A ++ + + A++ P R+ AD Sbjct: 356 LDLTRIESGGIELRLAAVPLRPLAEEALAMVAGSAERAQVTL--ALADSAPGARVRADGT 413 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 ++Q+ LN+L+NAI + +GG++ + L V DTG+G+ E E+ +PF + Sbjct: 414 RLRQVLLNLLTNAIKYNRAGGRVELEIAAPQGRWQPLAVHDTGIGIARDERERLFEPFYR 473 Query: 763 IPNSQQIRG--EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + +RG EGTG+GL L + +V G+ + S P +G+ + P Sbjct: 474 ---GRAVRGRVEGTGIGLALTQDLVVLMGGRIEVDSEPGRGSSFTVTLP 519 >gi|254445827|ref|ZP_05059303.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198260135|gb|EDY84443.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 567 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 82/240 (34%), Positives = 127/240 (52%), Gaps = 12/240 (5%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A+ ES KSDFLA +SHEIRTP+ A+IGF +++ N + + EY I+ SG L+ Sbjct: 167 AKAESDAKSDFLANMSHEIRTPMNAVIGFCDLLSNTKL----DEEQEEYLEAINHSGQLL 222 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 + ++ +LD SKIESG ++L E +S D+ + E +++ + E I N + Sbjct: 223 IKLIGQVLDYSKIESGHLHLESEELSFDQILLEVQAMMGVRLKETDIEFVVEKENLSDEL 282 Query: 698 L-ADLRSVKQIALNILSNAIHFTPSGGQIIISTT----HTSNEEVILRVRDTGVGMTNYE 752 L D VKQ+ +N+L NA FT G ++ + + H + + +RV DTG+G+ Sbjct: 283 LVGDTTRVKQVLINLLGNAFKFTRDGSIVLKARSFDSHHLGHLCLQVRVEDTGIGIRADR 342 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGT--LIEIIFP 809 L PF Q G+GLGL + K + +A G ++ ST P KG+ + EI P Sbjct: 343 LRSLFCPFAQAHMRIAREFGGSGLGLAICKRLCEAMHGDVWVESTKPGKGSVFVFEIHLP 402 >gi|193214323|ref|YP_001995522.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] gi|193087800|gb|ACF13075.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] Length = 1629 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 85/285 (29%), Positives = 146/285 (51%), Gaps = 40/285 (14%) Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 Y+ DI+ K+ + +L A++ A + + K++FLA +SHEIRTP+ A+IG + ++ + Sbjct: 896 AYAAISSDITIRKKVERELIEAREEALRAAQAKAEFLANMSHEIRTPMNAVIGMTGLLLD 955 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 PL + EY I SG+ +L ++ND+LD SKIESGK+ L P +L A+ E I Sbjct: 956 T---PLTAEQR-EYVETIRSSGDALLTVINDILDFSKIESGKLELEQYPFTLRNAIEECI 1011 Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT- 730 + A EK + + +P ++ D+ ++QI +N++SNA+ FT S G++++ Sbjct: 1012 DIFSATAAEKHLELVYFIHEKVPTKVSGDVTRLRQILVNLVSNAVKFTKS-GEVVLEVQL 1070 Query: 731 -----HTSNEEVIL----------------------------RVRDTGVGMTNYELEKAM 757 ++E +++ VRDTG+G+ LE+ Sbjct: 1071 QQPREQNADERLMVFHDHDDDKYNYPQAALQQFDDKKCTLHFTVRDTGIGIPADRLERIF 1130 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 F Q+ S + GTGLGL ++K + + GK ++ S KG+ Sbjct: 1131 HSFSQVDASTTRKYGGTGLGLTISKHLCELMNGKMWVESELGKGS 1175 >gi|182415728|ref|YP_001820794.1| response regulator receiver sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177842942|gb|ACB77194.1| response regulator receiver sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 758 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 90/282 (31%), Positives = 138/282 (48%), Gaps = 8/282 (2%) Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 L R+ + S +L +I + L AK AE KS FLA +SHEIRT Sbjct: 184 LEARVRARTAELESANALLHEEIGRRMLVELDLKRAKDAAEAADRAKSVFLANMSHEIRT 243 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 P+ ++G + ++ PL NP + A + +SG +L I+ND+LD SKIE+G+M L Sbjct: 244 PMNGVLGMANLLLAT---PL-NPEQHDLAETLCQSGESLLTIINDILDFSKIEAGRMELE 299 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIH 717 L + + A+ L A K + + + +PR + D ++QI LN++ NAI Sbjct: 300 AIDFDLADNLELALDLHAEAAARKHLELVVNIDPAVPRHVRGDPGRLRQILLNLVGNAIK 359 Query: 718 FTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 FT G ++ ++ H V+LR V DTG+G+ + EK +PF Q S R G+ Sbjct: 360 FTEKGEVVVKVTVDHNWPNRVLLRFAVTDTGIGIPEWVQEKLFQPFVQADTSTTRRFGGS 419 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 GLGL + K + + G + S P +G+ L HP Sbjct: 420 GLGLVICKRLAELMSGSIGVESKPNEGSTFWFTVELKHAFHP 461 >gi|75911124|ref|YP_325420.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704849|gb|ABA24525.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 889 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 97/345 (28%), Positives = 170/345 (49%), Gaps = 18/345 (5%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L +IL + +D +NR+ I N +K+ ED++ K + EQ + + Sbjct: 379 RLSNILSSMTDAFIAVNRDWDITYCNHQAAKIQHLEPEDLIGKNY---WEQWARTKGTDF 435 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 E R E I + +L + + P + +I+E KQ + + Sbjct: 436 EREYR----RSLAENIPVHFEVLYELWDMWFEVHAYPAEDGLGIFFRNITERKQAEQERE 491 Query: 573 H-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + A+ AE+ + K DFLA +SHE+RTPL I+G++ ++K + R IE Sbjct: 492 YLLMREQIARSEAERANRLKDDFLAVLSHELRTPLNPILGWATLLKKRNLEEATRRRGIE 551 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I+R+ L + ++ DLLD+S+I+ GK+NL+ + V+L + EA+ V L K I Sbjct: 552 T---IERNAKLQIQLIEDLLDVSRIQQGKLNLNIQSVNLVNTIEEALETVSLAIEAKNID 608 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 ++T+ N+ + D ++QI N+L+NAI FTP GQI ++ +N I +++D G Sbjct: 609 VKTALNVNVCMVAGDAARLQQIIWNLLANAIKFTPPAGQIQVALERVNNSAQI-QIQDNG 667 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 G+++ L + F Q + + G GLGL + K + + + G Sbjct: 668 KGISSEFLPYVFEYFRQADGTITRQFGGLGLGLAIVKHLTELHGG 712 >gi|39995118|ref|NP_951069.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] gi|39981880|gb|AAR33342.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] Length = 762 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 94/380 (24%), Positives = 192/380 (50%), Gaps = 21/380 (5%) Query: 436 EDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 E ++ R+ +R +++E+ +L +IL + ++GIA+ +R+G ++ N A +LF ++ Sbjct: 398 EFLERRVEERTAALQVEMGRLEAILTSMAEGIAVTDRDGRVILFNPAAQQLFEMVPHRVV 457 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 +P Q + ++T + + T+ ++ L + ++ ++L ++ + Sbjct: 458 GQPILDICNQGEFCRLVEHITSMGENRDQATVREVDLDARGKKLKVTLAPLVDGDGHFAG 517 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKN 612 +++ D++ AE+E K++F++ VSHE++TPLT+I G ++I + Sbjct: 518 VVMSVRDVT---------------AEEEVDRMKTEFISTVSHELKTPLTSIKGSLQLIVD 562 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + G + E R+ ++ +VND+LDI+KIESGKM P S E V ++ Sbjct: 563 KSRGFTDVEK--ELLGVCLRNTERLIRLVNDILDIAKIESGKMEFALSPHSPAELVEWSV 620 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 ++ +A E + + + ++P I D + Q+ N+++NA+ F+P G + IS + Sbjct: 621 RELEGFAREHGVTVVNEVSADLPAIYGDGDRLGQVLTNLIANAVKFSPRGAVVTISAEQS 680 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 N V + V+D G + + K K F QI + + + GTGLGL + K +V+ + G+ Sbjct: 681 DN-FVAVSVKDRGREIQWADRGKLFKRFQQIDSGDRRQHGGTGLGLAICKEIVERHHGRI 739 Query: 793 YIFSTPAKGTLIEIIFPLYD 812 + G + P+++ Sbjct: 740 FYSEGIGGGNVFTFTVPIHE 759 >gi|257791095|ref|YP_003181701.1| histidine kinase [Eggerthella lenta DSM 2243] gi|257474992|gb|ACV55312.1| histidine kinase [Eggerthella lenta DSM 2243] Length = 713 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/246 (32%), Positives = 132/246 (53%), Gaps = 8/246 (3%) Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 KI + KSDFL ++SH+IRTPL AI+G +E+ +++E + +SG Sbjct: 323 KIESARVNLKSDFLTKMSHDIRTPLNAIMGSNELALRSIDDSKTLKKHLETSR---KSGE 379 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI- 694 +L I+ND+LD+S+IESGKM + P +L + + I L A +K ++++ S + + Sbjct: 380 YLLSIINDMLDLSRIESGKMTMANRPFALPDLLDSIIVLQSGPAEKKGVVLKESSRHLVH 439 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTN 750 R L D +KQ +N++SNA+ FTP G +++S + E + V+DTG+GM+ Sbjct: 440 ERFLGDDTRIKQCLVNLVSNAVKFTPEQGTVLVSCEELAQEGSDSRIRFTVKDTGIGMSE 499 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +++ +PF Q +S G+GLGLP+ +V G ++ S GT + PL Sbjct: 500 SFMKRLFEPFEQEQSSLTSTQIGSGLGLPIVHNLVSLMGGTVHVESAQDAGTTFVVEIPL 559 Query: 811 YDTSHP 816 P Sbjct: 560 KPLDEP 565 >gi|170765863|ref|ZP_02900674.1| sensor histidine kinase/response regulator BarA [Escherichia albertii TW07627] gi|170125009|gb|EDS93940.1| sensor histidine kinase/response regulator BarA [Escherichia albertii TW07627] Length = 918 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR----DHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|160887907|ref|ZP_02068910.1| hypothetical protein BACUNI_00311 [Bacteroides uniformis ATCC 8492] gi|317477835|ref|ZP_07937021.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|156862593|gb|EDO56024.1| hypothetical protein BACUNI_00311 [Bacteroides uniformis ATCC 8492] gi|316905971|gb|EFV27739.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 462 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/257 (32%), Positives = 138/257 (53%), Gaps = 13/257 (5%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI++ K + KL AK+ AE+ + KS FLA +SHEIRTPL AI+GFS ++ + Sbjct: 207 TAWDITDLKIMERKLRLAKEEAEESNRIKSAFLANMSHEIRTPLNAIVGFSSILATE--- 263 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + +EY + I+R+ L+L ++ND+LD+SKIE+G + + V +++ VSE Sbjct: 264 -VSEEERVEYLDIIERNNELLLQLINDILDLSKIEAGTLEYVYANVDINKMVSEIEQATS 322 Query: 677 LYANEKRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 + K + + T +P +L D R + Q+ N +SNA+ FT + G I I N Sbjct: 323 IRLTNKDVRLVT--VTPLPGLLLYTDQRRITQVFNNFISNALKFT-AAGSITIGYGMPEN 379 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + V DTG G+++ + F ++ + +Q GTGLGL +++ +V G+ + Sbjct: 380 SYIRFYVTDTGTGISSENAQGIFNRFVKLDSFKQ----GTGLGLAISQNIVKELKGEIGV 435 Query: 795 FSTPAKGTLIEIIFPLY 811 S +KG+ P Y Sbjct: 436 ESQLSKGSTFWFTLPFY 452 >gi|307152733|ref|YP_003888117.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306982961|gb|ADN14842.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1751 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 105/392 (26%), Positives = 188/392 (47%), Gaps = 64/392 (16%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L +I++ +DG+ + + G I N A+ +F T ++ +L Sbjct: 1385 LNAIVDNLADGLLVTDIHGFITRFNPALLSMFNL-----------------TDNLKGKHL 1427 Query: 514 TEILSLDL--------RQTLEKIT----LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561 +E+LSLDL RQ E +T LGS + + L SS + D Sbjct: 1428 SEVLSLDLANLVRKIGRQQKEIVTAEVELGSGRSGQAL----------VSSIFQENFGD- 1476 Query: 562 SEWKQEKNKLSHAKKI----AEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQR-- 614 +E+ L I +E+E K++FLA VSHE+RTPLT+++GF+ +I+ + Sbjct: 1477 ----EEEPCLGSVILIRDVTSEREVDRMKTEFLATVSHELRTPLTSVLGFTSLIQEKLEE 1532 Query: 615 --FGPLGN--PRYIEYANYIDRSGNLVLD-------IVNDLLDISKIESGKMNLHFEPVS 663 F + + R + + ++ +++ ++ND+LDI+K+E+G+M + + S Sbjct: 1533 VIFPAISSDETRVKKARKKVGQNIKIIISEAERLTALINDVLDIAKMEAGRMEWNIKSTS 1592 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 + E + A + ++K+I + F N+P I D + Q+ +N+LSNA+ FT G Sbjct: 1593 VVEILETASAATYPLFDKKKIDLIKDFPLNLPNIWVDKNRMIQVVINLLSNAVKFTDEGS 1652 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + ++++++ + DTG+G+ E K + F Q N + GTGLGLP+ K Sbjct: 1653 --VTCCAKLEDDQLVISITDTGIGIAENEQSKIFERFQQGGNILTDKPTGTGLGLPICKQ 1710 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 +V+ + GK ++ S P +G+ PL H Sbjct: 1711 IVEYHGGKIWVISAPHQGSTFFFSLPLSGQEH 1742 >gi|182677583|ref|YP_001831729.1| histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182633466|gb|ACB94240.1| histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 903 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 123/226 (54%), Gaps = 6/226 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 ++DF+ VS+E+R+PLT IIGF E++ GPL N + EY Y+ S + + I+ND+ Sbjct: 661 RNDFVHHVSYELRSPLTNIIGFIEMLGEGAVGPL-NEKQHEYIGYVMASSSALRAIINDI 719 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD++ I++ M+L E V + EA+ A V+ E + + A +I LAD + + Sbjct: 720 LDLASIDADAMDLSLEEVDIAEAMRAAAEGVRDRLRESTLTLAVDAAPDIGVFLADGKRI 779 Query: 705 KQIALNILSNAIHF-TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 +QI N+LSNAI F TP GQ + S++EVI +V D G G+ + +E F Sbjct: 780 RQILFNLLSNAIGFSTP--GQTVTLAASRSHDEVIFKVIDEGCGIPDDMVEHVFDRFKTH 837 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 R G GLGL + ++ V + G+ I + KGT + IFP Sbjct: 838 AGGSNHR--GVGLGLSIVRSFVQLHGGRVLIETKLGKGTTMTCIFP 881 >gi|115522390|ref|YP_779301.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] gi|115516337|gb|ABJ04321.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] Length = 749 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/253 (30%), Positives = 128/253 (50%), Gaps = 5/253 (1%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + D++E + + L+ A+ +A + KS FLA SHEIRTPL IIG S ++ + Sbjct: 201 WQCVGRDVTERTETERALAEARDLACAANRAKSRFLAMASHEIRTPLNGIIGMSGLLLDT 260 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 +P I Y + SG+ + ++ +LLD SKIE+GK++L +P +L + + Sbjct: 261 EL----SPEQITYVKAVKTSGDALASLIEELLDYSKIEAGKIDLDAKPFALTALIEDTAE 316 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 L+ A +++ I T +P ++ D ++Q+ LN+ NAI FT +GG +I Sbjct: 317 LLAPRAQARQLEIATYVDERLPAHVIGDAARLRQVLLNLAGNAIKFTETGGVSLIVEPGL 376 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 +E+ V DTG+G+ + + F Q GTGLGL +++ +V G Sbjct: 377 MPDEIRFLVSDTGIGIAPEAQARIFREFEQADEQTARNFGGTGLGLSISERIVKRMGGHI 436 Query: 793 YIFSTPAKGTLIE 805 + S P G++ E Sbjct: 437 ALRSQPGHGSIFE 449 >gi|75908367|ref|YP_322663.1| Cache sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75702092|gb|ABA21768.1| Cache sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 937 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/261 (30%), Positives = 147/261 (56%), Gaps = 21/261 (8%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +++ AK+ A+ + KS+FLA +SHE+RTPL I+G++++++ + ++ N Sbjct: 455 EITAAKETADAANRAKSEFLANMSHELRTPLNGILGYAQILQ---MDSNTSDEQMQGLNT 511 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I G+ +L ++ND+LDI+KIE+ K+ L+ + L + + A + ++ A++K ++ + Sbjct: 512 IYECGSHLLTLINDILDIAKIEAKKLELYPKEFDLRKLLLGACEMCRIKADQKELIFKYH 571 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSG------------GQIIISTTHT--SN 734 N IP I AD + ++Q+ +NILSNAI FT G G +I+ T+ Sbjct: 572 LNNRIPANIFADEKRIRQVLINILSNAIKFTDHGTVTFDVEVVACTGTKLITNTNQLLPV 631 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 ++ + DTG+GMT+ +L+K PF Q+ ++ + EGTGLGL ++ +++ + Sbjct: 632 HQLRFHIEDTGIGMTDEQLKKIFLPFEQVGDNLH-KSEGTGLGLAISSQILELMGSDLKV 690 Query: 795 FSTPAKGT--LIEIIFPLYDT 813 S KGT ++ P+ DT Sbjct: 691 ESVYGKGTKFWFDLDLPIVDT 711 >gi|294054948|ref|YP_003548606.1| histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293614281|gb|ADE54436.1| histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 638 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/246 (32%), Positives = 128/246 (52%), Gaps = 18/246 (7%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q K+ HA E KS FLA +SHEIRTPL +IGF +++ N Sbjct: 218 EQAKSAAHHADVANEA----KSSFLATMSHEIRTPLNGVIGFIDMLSQTEL----NAEQQ 269 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EY + S ++ ++ND+LD SKIESG+M ++L + E L A +K + Sbjct: 270 EYIQSLQMSSETLMALINDILDFSKIESGRMEFETRSINLVRLLRETTQLFFGEAAKKGV 329 Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-----TSNE--E 736 ++ F+ +PR++ D ++QI +N+L NA+ FT +G I H T+ E E Sbjct: 330 ELKLDFSEEVPRVVRGDETRIRQILINLLGNAVKFTDTGS--IAVAVHCYEPWTTGEVCE 387 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + D+G+GMT ++ K PF Q +S + GTGLGL + K + +A G+ + S Sbjct: 388 IEFEITDSGIGMTEDQVSKLFHPFLQADSSTTRKFGGTGLGLAICKRLSEAMGGRIWATS 447 Query: 797 TPAKGT 802 T +G+ Sbjct: 448 TVGEGS 453 >gi|71278636|ref|YP_270772.1| hybrid sensory histidine kinase BarA [Colwellia psychrerythraea 34H] gi|71144376|gb|AAZ24849.1| sensor histidine kinase/response regulator [Colwellia psychrerythraea 34H] Length = 948 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/230 (36%), Positives = 134/230 (58%), Gaps = 12/230 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLG 619 + +++ + +LS +K+ A++ + KS+FLA +SHE+RTPL +IGF+ +V+K PL Sbjct: 280 LEQFEIQNVELSISKRKAQEANRVKSEFLANMSHELRTPLNGVIGFTRQVLKT----PLT 335 Query: 620 -NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N R +Y IDRS N +L I+ND+LD SK+++GKM P SL E++ E ++L+ Sbjct: 336 ENQR--DYLQTIDRSANNLLTIINDILDFSKLDAGKMVTENIPFSLRESIDETLTLLAPS 393 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEE 736 A++K I + + +P ++ D +KQI N++SNAI FTP G + I++ S Sbjct: 394 AHKKNIELSINLPQELPDSLVGDTMRIKQIITNLVSNAIKFTPQGSVAVDITSEEISQNN 453 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + L+ V DTG+GMT + F Q S GTGLGL + + + Sbjct: 454 IKLKVIVTDTGIGMTTNQQRTIFDAFTQADQSITRLYGGTGLGLVICQRL 503 >gi|320656477|gb|EFX24373.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 918 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR----DHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRAQSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|321312444|ref|YP_004204731.1| two-component sensor histidine kinase [Bacillus subtilis BSn5] gi|320018718|gb|ADV93704.1| two-component sensor histidine kinase [Bacillus subtilis BSn5] Length = 579 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 98/366 (26%), Positives = 183/366 (50%), Gaps = 27/366 (7%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 R E++ +L +++E G+ +I+ G I NR+ +K F +LR+ + E Sbjct: 227 RTQEMQRDRLLTVIENIGSGLIMIDGRGFINLVNRSYAKQFHINPNHMLRRLYHDAFEHE 286 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 ++ Q +E I + TK+ KLL L I I++ F M EW Sbjct: 287 ---------------EVIQLVEDIFMTETKKCKLLRLPIKIERRYFEVDGVPIMGPDDEW 331 Query: 565 KQEK---NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 K + ++ KK+ + + DF+A VSHE++TP+T+I GF+E + + G + + Sbjct: 332 KGIVLVFHDMTETKKLEQ----MRKDFVANVSHELKTPITSIKGFTETLLD---GAMEDK 384 Query: 622 RYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + E+ + I + + +V DLLD+SKIE L E + + E +L++ A+ Sbjct: 385 EALSEFLSIILKESERLQSLVQDLLDLSKIEQQNFTLSIETFEPAKMLGEIETLLKHKAD 444 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 EK I + + + + D +KQ+ LN+++NA+ +TP GG + I+ +++ + Sbjct: 445 EKGISLHLNVPKDPQYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAIN-VKPREKDIQIE 503 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D+G+G+ E+ + + F ++ + GTGLGL + K +++A+ GK + S + Sbjct: 504 VADSGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTSELGR 563 Query: 801 GTLIEI 806 GT+ + Sbjct: 564 GTVFTV 569 >gi|295107999|emb|CBL21952.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162] Length = 968 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 100/340 (29%), Positives = 171/340 (50%), Gaps = 15/340 (4%) Query: 481 VSKLFGYPVEDILRKPFTVFLE---QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 V KL G+ VE I RK + + ++ + +YL I + + ++ + T E + Sbjct: 351 VEKLMGFTVEQI-RKDIYILGKLHPWDSENSKKNYLEGIQTSEQQEWDFEYLHQKTGERR 409 Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + + ++ Y L M D + + LS A + AE + KS FL+ +SH+IR Sbjct: 410 WFHIVAMGSEVNRKKKYILVMSDRTSDRNMNQALSEAVRAAETANKAKSTFLSNMSHDIR 469 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ AIIGF+ + + R +Y I S N +L ++ND+LD+S+IESGK++L Sbjct: 470 TPMNAIIGFTTLAVSN---IDDKERVRDYLGKILSSSNHLLSLINDILDMSRIESGKIHL 526 Query: 658 HFEPVSLDEAVSEAISLV--QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 VSL + + + +++ Q++A + + + N + D + Q+ LN+LSNA Sbjct: 527 EETEVSLSDILHDLKTIISGQIHAKQLELYMDAMDITN-EDVYCDKTRLNQVLLNLLSNA 585 Query: 716 IHFTPSGGQIIIST-----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 + FTP+GG + + T +E +RV+D G+GM+ ++K PF + S R Sbjct: 586 VKFTPAGGTVSVRIRQRPGTQKGSELYEIRVKDNGIGMSQEFVQKIFAPFERERTSTVSR 645 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +GTGLG+ + K +VD G + + KGT + P Sbjct: 646 TQGTGLGMAITKNIVDMMGGTIEVQTEQGKGTEFIVRLPF 685 >gi|75907783|ref|YP_322079.1| response regulator receiver signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75701508|gb|ABA21184.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 443 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 132/233 (56%), Gaps = 12/233 (5%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR---SGNLVL 638 S KS FLA +SHE+RTP+ AIIGFS+++ +FG L + A+ ++R +G +L Sbjct: 171 SRLKSQFLATMSHELRTPMNAIIGFSQILLRPKFGNLTG----QQADMVERILNNGKHLL 226 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI--LIRTSFANNIPR 696 ++N++LD SK+E G++ L E L + ++ A++ ++ A K++ L++ N P Sbjct: 227 MLLNEVLDFSKLEEGRLELKPELFDLTKVINAAVAEMRSLAEAKKLSLLVQIDLQN--PL 284 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 ++ D +KQI +N+LSNAI FT SG I I V +RV+DTG+G+ + + + Sbjct: 285 LVNDPVRIKQILINLLSNAIKFTDSGS-IWIDVKDLPGSWVEIRVKDTGIGIASKDFKYI 343 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q+ S + GTGLGL + ++V GK + S G++ I P Sbjct: 344 FEAFRQVDQSITRKYAGTGLGLAIIDSLVQMMSGKIILESQLGVGSIFTITLP 396 >gi|303245459|ref|ZP_07331743.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] gi|302493308|gb|EFL53170.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] Length = 576 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/269 (30%), Positives = 143/269 (53%), Gaps = 22/269 (8%) Query: 562 SEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK--- 611 +E + +L+H A++ A+ + KS+FL+ VSHEIRTPLT+++GF+ +I+ Sbjct: 309 AELTRANERLTHEVTIRKRAEEAADAANRAKSEFLSMVSHEIRTPLTSVMGFAVIIEKRL 368 Query: 612 NQRFGPL--GNPR-------YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 +Q F L +PR +E I G + ++ND+LD++K+E+GKM E V Sbjct: 369 DQLFNRLLGDDPRQRRQAEQIMENLGIIVSEGERLKHLINDVLDLAKLEAGKMAFKHERV 428 Query: 663 SLDEAVSEAISLVQ-LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 E V +S + L A R+ ++TS +P ++ D + Q+ +N++SNA+ FT Sbjct: 429 DPAEVVRHVMSASEGLLAATPRVALKTSIQGRLPEVIGDRDRLIQVLVNLVSNALKFTEQ 488 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 G + T++ V++ V DTG+G+ E K + F QI + + +GTGLGL + Sbjct: 489 GS--VTCRARTADGYVVIDVADTGIGIPEAEQHKVFEKFNQIGATLTNKPKGTGLGLAIC 546 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 K +V+++ G+ S G+ P+ Sbjct: 547 KHIVESHGGRISYVSRFGSGSTFTFALPI 575 >gi|300864141|ref|ZP_07109036.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300337869|emb|CBN54182.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 409 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/239 (35%), Positives = 127/239 (53%), Gaps = 16/239 (6%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHE+RTPL AIIG+SE+++ + L I I +G +L ++ND+ Sbjct: 166 KSQFLANMSHELRTPLNAIIGYSEMLQEEA-EDLAQEDLIPDLKRIHGAGTHLLGLINDI 224 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+SKIESGK+ L+ E V++ + E I +V+ + ++ A+N+ + DL V Sbjct: 225 LDLSKIESGKVELYLETVNISLLIREIIIMVRPLVEKNANVLVVDCADNLGYMKTDLTKV 284 Query: 705 KQIALNILSNAIHFTPSGGQIIIST------THTSNEE--------VILRVRDTGVGMTN 750 +Q N+LSNA FT G+I I + T N E ++ +V DTGVG++ Sbjct: 285 RQSLFNLLSNACKFTKK-GKITIKVEKEYRKSGTLNGEEHKSAILYILFKVTDTGVGISP 343 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +EK +PF Q S GTGLGL + K + G ++ S KG+ I+ P Sbjct: 344 ERMEKLFQPFTQADASTTREYGGTGLGLAITKKLSRIMGGDIFVESEVGKGSTFTILLP 402 >gi|326797022|ref|YP_004314842.1| Hpt sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] gi|326547786|gb|ADZ93006.1| Hpt sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] Length = 911 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 86/256 (33%), Positives = 134/256 (52%), Gaps = 10/256 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ L +AK+ E+ KS F+AR+SHEIRTP+ A+IG S + + N Sbjct: 168 KERTAALENAKQELEQALDAKSAFVARMSHEIRTPINAVIGLSNLALKTQLNAEQN---- 223 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +Y I SG+++L +VND+LD SKIE+G + L P +E V I++ A EK + Sbjct: 224 DYLTKIKDSGDVLLGLVNDVLDFSKIEAGMLKLESVPFHPEELVRTTINMNSFSAYEKNL 283 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--VILR- 740 + T A ++P ++ D ++QI +N+++NA+ FT S G I I + EE V L+ Sbjct: 284 ELITDIAKDVPTELIGDPLRIQQILINLVNNAVKFT-SEGSICIRLSSEEQEEGHVSLKC 342 Query: 741 -VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ ++ F Q +S + GTGLGL + + + G + S Sbjct: 343 EVSDTGIGIPEEHMDTLFSSFAQADDSITRKFGGTGLGLTITSQLSELMGGSITVKSELG 402 Query: 800 KGTLIEIIFPLYDTSH 815 GT + PL +SH Sbjct: 403 SGTTFTVHLPLKISSH 418 >gi|300936299|ref|ZP_07151231.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 21-1] gi|300458551|gb|EFK22044.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 21-1] Length = 918 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR----DHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLKLTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|56480068|ref|NP_708113.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella flexneri 2a str. 301] gi|56383619|gb|AAN43820.2| sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsB [Shigella flexneri 2a str. 301] Length = 949 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/260 (31%), Positives = 134/260 (51%), Gaps = 7/260 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPHD 818 G+ + PLY +PH+ Sbjct: 679 GMGSQFTVRIPLYGAQYPHN 698 >gi|332999537|gb|EGK19122.1| signal transduction histidine-protein kinase barA [Shigella flexneri VA-6] Length = 918 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR----DHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|330842920|ref|XP_003293415.1| hypothetical protein DICPUDRAFT_50957 [Dictyostelium purpureum] gi|325076250|gb|EGC30052.1| hypothetical protein DICPUDRAFT_50957 [Dictyostelium purpureum] Length = 947 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 92/309 (29%), Positives = 150/309 (48%), Gaps = 29/309 (9%) Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEI 596 ++ + III L F+ CY + + + KN +L+ AK A + + +FLA +SHEI Sbjct: 511 IIDVTIIIMTLIFTLCYQYFIDEAHRETKLKNAQLTIAKDAAIEAYQARQEFLATMSHEI 570 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL +IG + ++++ P P A + G+++L +VND+LD+SK+E+ +M Sbjct: 571 RTPLNGLIGMATLLRDSHNLP---PEEKTMAKAVKSCGDILLRLVNDILDLSKLEANQMG 627 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNA 715 L P + E + ++ ANEK I + ++ IP L D + QI +N+ NA Sbjct: 628 LEHIPFKMRELTQQICHVLSGQANEKGIQLACEVSDKIPATLVGDSGRILQILMNLTGNA 687 Query: 716 IHFTPSGGQIIISTTHTSNEEVI----------LRVRDTGVGMTNYELEKAMKPFGQIPN 765 + FT SG II E++ R++DTG+G+ +K + F Q Sbjct: 688 LKFTQSGYVKIIVDLIEEESELVSSRKGEYNISFRIKDTGIGVPVESHQKIFEAFVQADP 747 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-AKGTLIEIIFPL----------YDTS 814 S + G+GLGL L +V G+ +++ P +G+ I PL +T Sbjct: 748 SDSRKYGGSGLGLYLCAKLVKLMKGEIGVYNNPDCEGSTFWFIIPLEEGTDSMQSTCNTR 807 Query: 815 H---PHDCI 820 H P DCI Sbjct: 808 HNVFPPDCI 816 >gi|322514684|ref|ZP_08067712.1| sensor histidine kinase [Actinobacillus ureae ATCC 25976] gi|322119382|gb|EFX91491.1| sensor histidine kinase [Actinobacillus ureae ATCC 25976] Length = 616 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 125/232 (53%), Gaps = 5/232 (2%) Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 +H EK + KS +A +SHE+RTPL IIG S ++ G L + EY I+ Sbjct: 102 AHLNATLEKNNRDKSVLMATISHELRTPLNGIIGLSRILLE---GELTQQQR-EYLKTIN 157 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 S + I +D++D+ KI+S ++ L + V + +S+ + L A++++I S++ Sbjct: 158 ISAVSLGHIFSDIIDLEKIDSRRIELFNKEVEFSQLISDISNFANLMADQRKIKFHISYS 217 Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 +N+P IL D + Q+ N++SNA+ FTP+GG I + ++ +RDTG+G+ Sbjct: 218 DNLPNFILVDNARLSQVLWNLVSNAVKFTPAGGDIYLDVQRVDDDHFSFSLRDTGIGIPK 277 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 E K F Q NSQ+ + +G+G+GL ++K + G + S KG+ Sbjct: 278 NEQRKVFAMFYQAENSQEKKAQGSGIGLAISKRIAKLMGGDLTLESEEGKGS 329 >gi|302381782|ref|YP_003817605.1| PAS/PAC sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302192410|gb|ADK99981.1| PAS/PAC sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 663 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 82/269 (30%), Positives = 140/269 (52%), Gaps = 16/269 (5%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DI+ + + +L A+ +AE S KS+FLA +SHE+RTPLT+I+GFS +I G Sbjct: 253 VVRDITARRAAQAELQSARLLAEAASQAKSEFLANMSHELRTPLTSILGFSRLI-----G 307 Query: 617 PLGNPRYIE--YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 G+ + Y + I +G +L +VND+LD SK+E+G + L EP S+ A +L Sbjct: 308 AGGDLSASDRGYLDLIRSAGETLLTVVNDILDFSKLEAGALALSPEPFSVAALGEGATAL 367 Query: 675 VQLYANEKRILIRTSFANNIP----RILADLRSVKQIALNILSNAIHFTPSGG---QIII 727 ++ A K +++ P R++ D+ ++Q+ LN+L NA+ FT G + + Sbjct: 368 LREQAEAKGLVLSCEILGAGPAGDARLVGDVTRLRQVLLNLLGNAVKFTERGNVRLSLSV 427 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + V DTG G+ ++E+ + F Q S R GTGLGL +++ ++D Sbjct: 428 EPAQDGTATLSASVTDTGPGLAAGQIEQMFERFTQADGSVSRRFGGTGLGLAISRRLMDV 487 Query: 788 NMGKFYIFSTPAKGT--LIEIIFPLYDTS 814 G+ S + G+ + P+ +T+ Sbjct: 488 MGGEIGARSDGSTGSTFWFRTVLPVAETA 516 >gi|227820615|ref|YP_002824585.1| sensor protein [Sinorhizobium fredii NGR234] gi|227339614|gb|ACP23832.1| sensor protein [Sinorhizobium fredii NGR234] Length = 755 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/255 (31%), Positives = 134/255 (52%), Gaps = 14/255 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E Q + A+ AE+ S KS LA V+HEIRTPL+ I+G S ++ + Sbjct: 217 DVTEEAQAVRRGEEARLRAEEASQAKSRLLATVTHEIRTPLSGILGMSHLLAQTQL---- 272 Query: 620 NPRYIEYANYI---DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 E NY+ +SG+ ++ +V DL+D S + +G+ LH L + + ++ Sbjct: 273 ---SAEQRNYLADMQQSGHALVQLVEDLIDFSSLSAGRFQLHPSEQELRLVIENVVEMLS 329 Query: 677 LYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A+EK I I + ++ PR D ++Q+ N++ NA+ FT +GG ++ T Sbjct: 330 HRAHEKGIEIGVAIDASVPPRFGFDAARLRQVLFNVIGNAVKFTEAGG--VLVTADYGEG 387 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V +RV D+G GM+ EL + + F Q + Q R +GTGLGL +++ +++A G Sbjct: 388 HVRIRVDDSGPGMSADELARVFEEFEQAGDHAQ-RSKGTGLGLAISRRIMEAFGGSLIAS 446 Query: 796 STPAKGTLIEIIFPL 810 S +G+ EI FP+ Sbjct: 447 SVTGEGSRFEIRFPV 461 >gi|115372873|ref|ZP_01460178.1| two-component sensor histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|310818489|ref|YP_003950847.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115370140|gb|EAU69070.1| two-component sensor histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|309391561|gb|ADO69020.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 463 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 125/232 (53%), Gaps = 9/232 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 +S FL VSHE+RTPL +II +SE++ G L NP ++ I G +LD++ + Sbjct: 211 QSSFLGTVSHELRTPLASIIAYSELLSEGITGML-NPEQLQCVQSITEMGRTLLDLITSI 269 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRS 703 LDIS++E+GK+ L F PV + E V A+S V + K + + PR+LAD Sbjct: 270 LDISQLEAGKLRLAFAPVDMAEVVVSAVSSVTPQSRRKGLKLEVVLPELRQPRVLADKGR 329 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI------LRVRDTGVGMTNYELEKAM 757 + Q+ +N+L+NA+ FTP G + + + +E + V DTGVG+ +LE+ Sbjct: 330 LYQVLVNLLANALKFTPE-GHVRVRLSEVGPQEELGTLGYRFCVEDTGVGIRQDQLERIF 388 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q+ +S G GLGL + K V+ + GK + S P +G+ + P Sbjct: 389 QTFYQVDSSSTREFGGVGLGLSIVKRFVEGHGGKVLVTSQPGQGSCFTAVLP 440 >gi|238791234|ref|ZP_04634873.1| Signal transduction histidine-protein kinase barA [Yersinia intermedia ATCC 29909] gi|238729367|gb|EEQ20882.1| Signal transduction histidine-protein kinase barA [Yersinia intermedia ATCC 29909] Length = 911 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 131/237 (55%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ Q P +Y Sbjct: 268 ELGLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTR----QTLKTSLTPTQTDYLQT 323 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RS N +L I+ND+LD SK+E+ K+ L P L A+ E I L+ A+EK + + Sbjct: 324 IQRSANNLLCIINDVLDFSKLEAEKLILEHIPFPLRGALDEVIILLAHTAHEKGLELTLH 383 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV--ILRVRDTG 745 N++P +++ D ++QI N+L NAI FT G I+++ ++++V ++ + DTG Sbjct: 384 VNNDVPEQLVGDAMRLQQIVTNLLGNAIKFTEQGNIDILLAVQAKTDQQVTLVVEIHDTG 443 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++ + + + F Q S R GTGLGL + + +V G +S +G+ Sbjct: 444 IGISESQQAQLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFYSQVDRGS 500 >gi|51246144|ref|YP_066028.1| two-component system sensory/regulatory protein [Desulfotalea psychrophila LSv54] gi|50877181|emb|CAG37021.1| related to two-component system sensory/regulatory protein (hybrid family) [Desulfotalea psychrophila LSv54] Length = 1102 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 114/441 (25%), Positives = 203/441 (46%), Gaps = 31/441 (7%) Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 R R C++ S IQ +++A+ + N + +++ ++ ++ Sbjct: 295 RQWRVCLSPS-EAGQIQGFPPSAMAVFIVGIVLTVLLALQFRNNALRTSEIEWQVAEKTA 353 Query: 448 EIEVMQLCS--ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 ++ +L + I++ I I+ GI+ S NR+ K+FGY E+I+ + + + + Sbjct: 354 QLRKSELRAEAIIDKAVIPIITIDETGIVQSFNRSAEKMFGYGPEEIIGRNVRMLMPEPH 413 Query: 506 PSVMNHYLTEILSLDLRQTL---EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM-HDI 561 S N Y+ L + + K+T G K+ + + + ++ + M D+ Sbjct: 414 RSSHNKYVDHYLKTGRMKAIGVGNKLT-GVRKDGVEFPMHLSVSEVRLEKRIFVGMVVDL 472 Query: 562 SEWKQEKNKLSH------------------AKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 SE + + L AK+ AE + KS FLA +SHEIRTP+ ++ Sbjct: 473 SEINRAEEALRKHRDNLARLVEERTYELKIAKEAAETANIAKSAFLANMSHEIRTPMNSV 532 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 +GF ++ R R++E A Y G L+ I+ND+LD+SK+ESG+ L + Sbjct: 533 LGFIQITLESRLLCAELRRHLETA-YSSAKGLLI--IINDILDVSKLESGEFALEATCLD 589 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722 + V EA+ V+ A EK I + F ++P L D + Q+ +N++ NAI FT +G Sbjct: 590 MPRIVQEALKTVESQAEEKGIGLDFHFDADLPHCYLGDPTRLGQVIINLVGNAIKFTKTG 649 Query: 723 GQII-ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 I + + + + V D G+GMT + PF Q S GTGLGL ++ Sbjct: 650 KITIGVRASDQGDASLHFSVADRGIGMTAEQAANIFNPFTQADISTARCYGGTGLGLTIS 709 Query: 782 KAMVDANMGKFYIFSTPAKGT 802 K +V+ G+ ++ S +G Sbjct: 710 KQLVELMGGRIWVESELGRGV 730 >gi|16079962|ref|NP_390788.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] gi|221310851|ref|ZP_03592698.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] gi|221315177|ref|ZP_03596982.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320094|ref|ZP_03601388.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. JH642] gi|221324376|ref|ZP_03605670.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. SMY] gi|130130|sp|P23545|PHOR_BACSU RecName: Full=Alkaline phosphatase synthesis sensor protein phoR gi|143331|gb|AAA22663.1| alkaline phosphatase regulatory protein [Bacillus subtilis] gi|2293271|gb|AAC00349.1| signal transduction protein kinase [Bacillus subtilis] gi|2635375|emb|CAB14870.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] Length = 579 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 98/366 (26%), Positives = 183/366 (50%), Gaps = 27/366 (7%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 R E++ +L +++E G+ +I+ G I NR+ +K F +LR+ + E Sbjct: 227 RTQEMQRDRLLTVIENIGSGLIMIDGRGFINLVNRSYAKQFHINPNHMLRRLYHDAFEHE 286 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 ++ Q +E I + TK+ KLL L I I++ F M EW Sbjct: 287 ---------------EVIQLVEDIFMTETKKCKLLRLPIKIERRYFEVDGVPIMGPDDEW 331 Query: 565 KQEK---NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 K + ++ KK+ + + DF+A VSHE++TP+T+I GF+E + + G + + Sbjct: 332 KGIVLVFHDMTETKKLEQ----MRKDFVANVSHELKTPITSIKGFTETLLD---GAMEDK 384 Query: 622 RYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + E+ + I + + +V DLLD+SKIE L E + + E +L++ A+ Sbjct: 385 EALSEFLSIILKESERLQSLVQDLLDLSKIEQQNFTLSIETFEPAKMLGEIETLLKHKAD 444 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 EK I + + + + D +KQ+ LN+++NA+ +TP GG + I+ +++ + Sbjct: 445 EKGISLHLNVPKDPQYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAIN-VKPREKDIQIE 503 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D+G+G+ E+ + + F ++ + GTGLGL + K +++A+ GK + S + Sbjct: 504 VADSGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTSELGR 563 Query: 801 GTLIEI 806 GT+ + Sbjct: 564 GTVFTV 569 >gi|87308035|ref|ZP_01090177.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] gi|87289117|gb|EAQ81009.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] Length = 661 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 130/256 (50%), Gaps = 7/256 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS K+ + L AK+ AE KS+FL +SHE+RTPL AI+G+SE++++ Sbjct: 250 DISARKEAEFALQRAKRAAESAVRVKSEFLTNMSHELRTPLAAILGYSEIMEDHAV---- 305 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +E + I R+G +L+++ D+L+ S+IESGK+ + P E + + A Sbjct: 306 TSESLEAVDTIRRNGQHLLELIGDILEFSRIESGKLEVSAMPTPAYEFLKSTFESFRELA 365 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 ++K + ++ IP I+ D V+QI +++NA+ FT +G + N E Sbjct: 366 DDKGLRFVVDVSDQIPEMIITDPVCVRQILWRLVTNAVKFTDAGEIGVAVRVADGNLE-- 423 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 L VRDTG G+ L +PF Q NS R +G GLGL + + + G + S Sbjct: 424 LNVRDTGCGIPAEMLSSIYQPFRQADNSSTRRHDGAGLGLAICQKLSQMLGGDISVRSQA 483 Query: 799 AKGTLIEIIFPLYDTS 814 G+ + P+ T+ Sbjct: 484 GAGSQFTVRLPIERTA 499 >gi|328554527|gb|AEB25019.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens TA208] gi|328912933|gb|AEB64529.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens LL3] Length = 579 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 105/374 (28%), Positives = 184/374 (49%), Gaps = 29/374 (7%) Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 VD R +++ +L +++E G+ +I+ G I NR+ +K F E +LR+ + Sbjct: 222 VDLMEMTRTQDMQRDRLLTVIENIGSGLILIDGRGFINLVNRSYTKQFHTKPERLLRRLY 281 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 E EI+ L +E I + TK+ +LL L I I++ F Sbjct: 282 HDAFEHE----------EIIRL-----VEDIFMTETKKCQLLRLPINIERRYFEVDGVPI 326 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 M EWK +I + E K DF+A VSHE++TP+T+I GF+E + + G Sbjct: 327 MGPDDEWKGIVLVFHDMTEIKKLEQIRK-DFVANVSHELKTPITSIKGFTETLLD---GA 382 Query: 618 LGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + + + ++ + I + + +V DLLD+SK+E + E + + E +L+Q Sbjct: 383 MKDDKALSDFLSIILKESERLQSLVQDLLDLSKMEQQNFTMRVESFDAAKILHEIEALLQ 442 Query: 677 LYANEKRILIRTSFANNIPR----ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 A EK I SF ++P + D +KQ+ LN+ +NA+ +TP G + IS + Sbjct: 443 HKAAEKGI----SFQLDLPEEPIFVTGDAHRLKQVFLNLANNALTYTPEKGTVGIS-VNV 497 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 V ++V DTG+G+ E+ + + F ++ + GTGLGL + K +++A+ G Sbjct: 498 KETVVDIKVSDTGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGHI 557 Query: 793 YIFSTPAKGTLIEI 806 + S P +GT+ + Sbjct: 558 EVTSEPGQGTVFTV 571 >gi|311747357|ref|ZP_07721142.1| sensory box sensor histidine kinase/response regulator [Algoriphagus sp. PR1] gi|311302642|gb|EAZ83239.2| sensory box sensor histidine kinase/response regulator [Algoriphagus sp. PR1] Length = 938 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/264 (30%), Positives = 139/264 (52%), Gaps = 10/264 (3%) Query: 545 IKKLPFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 I+ P +++ D++ K + L A K A++ S KS+FLA +SHEIRTP+ + Sbjct: 516 IRYFPLDENRMMSLAKDVTNQKVWEKGLIEAMKAADEASRAKSEFLANMSHEIRTPMNGL 575 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 +G +++ + + +Y I SG+ +L I+ D+LD SKIE+GKM+L+ + Sbjct: 576 LGIIDLLDHTNL----DEEQSQYLEIIKNSGSSLLSIIKDILDYSKIEAGKMDLNPTLGN 631 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG 722 E + + I + A EK I ++T + D + Q+ LN++ NA+ FTP Sbjct: 632 PAEELEKQIQIFYGLAQEKSITLKTDIGKAAYGLFETDFDRINQVILNLVGNALKFTPQN 691 Query: 723 GQIIISTTHTSNEEVI----LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 GQ+ +S E + ++V+D+G+G+ + PF Q+ +S +GTGLGL Sbjct: 692 GQVTVSMDAEQIENELHYLKIQVKDSGIGIPEKHIPSLTDPFFQVESSSTRSYQGTGLGL 751 Query: 779 PLAKAMVDANMGKFYIFSTPAKGT 802 +AK +V+ G+ I ST +G+ Sbjct: 752 AIAKKIVELMGGELNINSTVGEGS 775 >gi|308187582|ref|YP_003931713.1| two component sensor kinase/response regulator protein RcsC [Pantoea vagans C9-1] gi|308058092|gb|ADO10264.1| two component sensor kinase/response regulator protein RcsC [Pantoea vagans C9-1] Length = 950 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/258 (32%), Positives = 135/258 (52%), Gaps = 7/258 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 446 DVSARVRMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PSG 504 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + N S +L+L I++D+LD SKIES ++ + P + E V+ + Sbjct: 505 IDSLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPRPFAPREIVTHIVGNYLSLV 561 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +KR+ + +++P++L D ++Q+ N+L+NAI FT +G II + + Sbjct: 562 VKKRLTLYCFIEHDVPQVLDGDPLRLQQVISNLLNNAIKFTHTG--CIILHAWVAEGYLA 619 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 RVRDTGVG+ EL + PF Q+ + Q +GTGLGL + + +++ G + S P Sbjct: 620 FRVRDTGVGIPAKELPRLFDPFFQVGSGVQRNFQGTGLGLAICEKLINMMDGDIEVDSEP 679 Query: 799 AKGTLIEIIFPLYDTSHP 816 G+ + P+Y P Sbjct: 680 GMGSQFIVRIPIYKGQKP 697 >gi|157144823|ref|YP_001452142.1| sensory histidine kinase AtoS [Citrobacter koseri ATCC BAA-895] gi|157082028|gb|ABV11706.1| hypothetical protein CKO_00550 [Citrobacter koseri ATCC BAA-895] Length = 593 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 93/364 (25%), Positives = 178/364 (48%), Gaps = 40/364 (10%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 I+E +DG+ I+R+G + + N A + GY + ++ +P++ H+ + + Sbjct: 252 IIENAADGVIAIDRQGNVTTMNPAAETITGYTLHELAGRPYSTLFADP------HFSSPV 305 Query: 517 LSLDLRQTLEKITLGSTKE------EKLLSLRIIIKKLPFSS---CYSLTM-HDISEWKQ 566 L TLE T +E ++ + L + ++ + +L M D++ K+ Sbjct: 306 LD-----TLENGTEHLAQEVSFPARDRTIELSVTTSRIHNADGELIGALVMFSDLTARKE 360 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + +L+ +++A + +A V+HE+R PLTAI G+ ++I+ Q + P + EY Sbjct: 361 AQRRLAQTERLATL-----GELMAGVAHEVRNPLTAIRGYVQIIRQQ----INLPVHQEY 411 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + + + + + ++ LLD S+ + ++ VS++ + EA+ LVQ + RI Sbjct: 412 LSVVLKEIDSINKVIQQLLDFSRPRQSQ----WQQVSINTLIEEALILVQTSGVQARINF 467 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T F +P I+AD +KQ+ LN+L NA+ + G+I I T + + + + D G Sbjct: 468 NTEFNAALPTIVADRELLKQVLLNMLINAVQAIGARGEIRIRTWRYTTTHLAIAIEDNGC 527 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +K PF + GTGLGL L++ +++A+ G Y+ S P G + Sbjct: 528 GIDVALQKKIFDPFF------TTKASGTGLGLALSQRIINAHQGDIYVTSMPGCGATFTL 581 Query: 807 IFPL 810 I P+ Sbjct: 582 ILPI 585 >gi|83814181|ref|YP_446380.1| PAS domain-containing protein [Salinibacter ruber DSM 13855] gi|294508317|ref|YP_003572375.1| PAS domain S-box protein [Salinibacter ruber M8] gi|83755575|gb|ABC43688.1| PAS domain S-box protein [Salinibacter ruber DSM 13855] gi|294344645|emb|CBH25423.1| PAS domain S-box protein [Salinibacter ruber M8] Length = 1155 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/245 (32%), Positives = 128/245 (52%), Gaps = 2/245 (0%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K + ++ AK+ AE + KS FLA +SHEIRTPLT+IIGF+E I ++ P + Sbjct: 903 KTAEKEMLAAKEEAEDANRMKSVFLANMSHEIRTPLTSIIGFAEAIGDELGDETAGP-VL 961 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +A I++SGN +L+ ++ +L++SK+E+G+M+L EPV+L +E A I Sbjct: 962 RFAQLIEKSGNRLLETLDGVLNLSKLEAGEMDLTIEPVNLAVQTAETADQFAPQAQASGI 1021 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + T + AD +V + N++SNAI +T GG++ + + ++ + DT Sbjct: 1022 SLHTDLDDAPVWARADEGAVHIVLRNLISNAIKYTNEGGEVEVQ-VRDAGTAAVMAIEDT 1080 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+GM ++ + F Q EGTGLGL + K VD G + + GT Sbjct: 1081 GIGMNPEQVTDLFEAFRQASEGLGREYEGTGLGLAVTKQAVDHMNGSIDVETEKGVGTRF 1140 Query: 805 EIIFP 809 + P Sbjct: 1141 VVRLP 1145 >gi|24114070|ref|NP_708580.1| hybrid sensory histidine kinase BarA [Shigella flexneri 2a str. 301] gi|30064131|ref|NP_838302.1| hybrid sensory histidine kinase BarA [Shigella flexneri 2a str. 2457T] gi|28558062|sp|P59342|BARA_SHIFL RecName: Full=Signal transduction histidine-protein kinase BarA gi|24053197|gb|AAN44287.1| sensor-regulator [Shigella flexneri 2a str. 301] gi|30042387|gb|AAP18112.1| sensor-regulator [Shigella flexneri 2a str. 2457T] gi|281602146|gb|ADA75130.1| Signal transduction histidine-protein kinase barA [Shigella flexneri 2002017] gi|313647846|gb|EFS12292.1| signal transduction histidine-protein kinase barA [Shigella flexneri 2a str. 2457T] gi|332753502|gb|EGJ83882.1| signal transduction histidine-protein kinase barA [Shigella flexneri 4343-70] gi|332753638|gb|EGJ84017.1| signal transduction histidine-protein kinase barA [Shigella flexneri K-671] gi|332754699|gb|EGJ85065.1| signal transduction histidine-protein kinase barA [Shigella flexneri 2747-71] gi|332765737|gb|EGJ95950.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Shigella flexneri 2930-71] gi|333000195|gb|EGK19778.1| signal transduction histidine-protein kinase barA [Shigella flexneri K-218] gi|333015336|gb|EGK34676.1| signal transduction histidine-protein kinase barA [Shigella flexneri K-304] Length = 918 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR----DHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|308174604|ref|YP_003921309.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens DSM 7] gi|307607468|emb|CBI43839.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens DSM 7] Length = 579 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 105/374 (28%), Positives = 184/374 (49%), Gaps = 29/374 (7%) Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 VD R +++ +L +++E G+ +I+ G I NR+ +K F E +LR+ + Sbjct: 222 VDLMEMTRTQDMQRDRLLTVIENIGSGLILIDGRGFINLVNRSYTKQFHTKPERLLRRLY 281 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 E EI+ L +E I + TK+ +LL L I I++ F Sbjct: 282 HDAFEHE----------EIIRL-----VEDIFMTETKKCQLLRLPINIERRYFEVDGVPI 326 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 M EWK +I + E K DF+A VSHE++TP+T+I GF+E + + G Sbjct: 327 MGPDDEWKGIVLVFHDMTEIKKLEQIRK-DFVANVSHELKTPITSIKGFTETLLD---GA 382 Query: 618 LGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + + + ++ + I + + +V DLLD+SK+E + E + + E +L+Q Sbjct: 383 MKDDKALSDFLSIILKESERLQSLVQDLLDLSKMEQQNFTMRVESFDAAKILHEIEALLQ 442 Query: 677 LYANEKRILIRTSFANNIPR----ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 A EK I SF ++P + D +KQ+ LN+ +NA+ +TP G + IS + Sbjct: 443 HKAAEKGI----SFQLDLPEEPIFVTGDAHRLKQVFLNLANNALTYTPEKGTVGIS-VNV 497 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 V ++V DTG+G+ E+ + + F ++ + GTGLGL + K +++A+ G Sbjct: 498 KETVVDIKVSDTGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGHI 557 Query: 793 YIFSTPAKGTLIEI 806 + S P +GT+ + Sbjct: 558 EVTSEPGQGTVFTV 571 >gi|303247947|ref|ZP_07334214.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490671|gb|EFL50574.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 838 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 101/363 (27%), Positives = 173/363 (47%), Gaps = 16/363 (4%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +ILE + GI + +++G +S N + ++ G E + F +++H + Sbjct: 331 TILETSPVGIGVYHQDGQCISVNDSFCRIIGGDKEALQSLNFRHLDSWREAGMLDHAVA- 389 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 L LE T+ S ++ + + L + DI+E KQ + L +AK Sbjct: 390 TLETGAPSHLECRTVTSFHKDIWIECHFVRFVRDGIDHLLLLLADITERKQVEAALRNAK 449 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 ++AE + KS+FLA +SHEIRTPL ++G ++++ + EY S Sbjct: 450 RVAETANVAKSEFLANMSHEIRTPLNGVLGMLQLMRTTSL----DAEQREYLAAAILSTQ 505 Query: 636 LVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 + +++D+LD+S+IE+GK+ L F+ L ++ E SLV A K + + S Sbjct: 506 RLTGLLSDILDLSRIEAGKLTLQEADFKVADLKASILEVFSLV---ARNKGLRLEFSTDA 562 Query: 693 NIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVG 747 +P R+ D ++QI N++ NA+ FT +GG + + + V+ VRDTGVG Sbjct: 563 AMPARLAGDETRIRQILFNLVGNALKFTTTGGVDVAAFALPPRADGRLPVVFSVRDTGVG 622 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + L ++PF Q + EG GLGL + + +V G+ I + GT I Sbjct: 623 IPDARLADIVEPFVQGLGAPYAPREGAGLGLSIVRRLVRMMGGELAIDNREGGGTTIYCA 682 Query: 808 FPL 810 PL Sbjct: 683 LPL 685 >gi|209809192|ref|YP_002264730.1| response regulator, histidine kinase [Aliivibrio salmonicida LFI1238] gi|208010754|emb|CAQ81147.1| response regulator, histidine kinase [Aliivibrio salmonicida LFI1238] Length = 943 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 112/393 (28%), Positives = 194/393 (49%), Gaps = 38/393 (9%) Query: 440 TRINKRKM---EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RK 495 T I KR++ E E +L + E D I I + G++ N++ S L G+ + ++L +K Sbjct: 260 TLIIKRELVNSEKEKSKLALVAEHAHDAILITDNNGMLTWANQSFSTLSGFQLNEVLGKK 319 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-------IIIKKL 548 P + +NT D+ + I G+ E +L++ I + Sbjct: 320 PGDLLQGENTSKD-----------DIARISAAIKKGAAIESELINYHKDGSEYWIGMSIT 368 Query: 549 P-FSSCYSLTM-----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 P F+S S+ DI++ K + L +A + AE + KS FLA +SHE+RTPL Sbjct: 369 PTFNSDGSVEQFIAVERDITKRKALEIDLFNAAEQAEVSNKAKSTFLATMSHELRTPLNG 428 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 I+G +++I++ + +P + N + SG+ +L ++ND+LD SKIE K+ L P Sbjct: 429 ILGMAQIIESN----IKDPEQHKQINVLLESGDHLLSLLNDILDFSKIEQNKLELDNLPF 484 Query: 663 SLDEAVSE-AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 + +S A + + + ++ LI N D ++QI N++SNA+ FT Sbjct: 485 DFKDVISPIANTYIPICEDKGLELIIHDQINAGAVFNGDKPRIRQIIFNLISNAVKFTHK 544 Query: 722 GGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 G I ++ +HT S + +++++ D+G+G+ L+ PF Q ++ + GTGLG Sbjct: 545 GS-ITLTFSHTLTAKSKQGLLIKIEDSGIGIREERLDYIFDPFIQAESATTRQYGGTGLG 603 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 L + K +VDA G + S +GT I+ PL Sbjct: 604 LAIVKQLVDAMQGYISVKSVEGEGTGFTIMLPL 636 >gi|186683317|ref|YP_001866513.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465769|gb|ACC81570.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 701 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 109/365 (29%), Positives = 180/365 (49%), Gaps = 45/365 (12%) Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TVF----LEQNTP-SVMNHYLT 514 T+ I +++ G + + N ++ GY +I+ +PF VF ++Q P V+ + Sbjct: 151 TNYAIFMLDPNGNVTTWNIGAERILGYQEAEIIGQPFERVFSPEAIKQGLPKQVLRKAVA 210 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQ---E 567 E S + R + K + +I L +S M DI+E KQ E Sbjct: 211 EGFSRENRWHIRK-------DGTFFWAHCLITPLLDDDGNLRGFSKIMQDITERKQAEEE 263 Query: 568 KNKLSHAKKIAEK-----------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 K +L ++ A + K +FLA VSHE+RTP+TAIIG++ +++ G Sbjct: 264 KEQLLLREQAARAVSEAAQSAAEAANRSKDEFLAIVSHELRTPMTAIIGWAGMLQT---G 320 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L + I+R+ NL + ++ DLLDIS+I G+++L + V L E ++ AI +VQ Sbjct: 321 VLDEAKATLALEIIERNANLQMQLIEDLLDISRIVRGELSLSIDLVDLVEVITAAIEVVQ 380 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII--STTHTSN 734 AN K I + T +I +I D ++Q+ LN+L+NAI FTP+GG++ + S S Sbjct: 381 SLANAKDIQLETILDTSIEKIWGDSDRLQQVVLNLLTNAIKFTPNGGRVEVRLSKEMGSR 440 Query: 735 EE---------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 EE + + V DTG G++ L + F Q ++ +G GLGL +A +V Sbjct: 441 EEFSQPAIPNYLQIEVTDTGKGISPDFLPHVFERFWQADSTHTRSNKGLGLGLAIALHLV 500 Query: 786 DANMG 790 + + G Sbjct: 501 ELHGG 505 >gi|270294837|ref|ZP_06201038.1| two-component system sensor histidine kinase [Bacteroides sp. D20] gi|270274084|gb|EFA19945.1| two-component system sensor histidine kinase [Bacteroides sp. D20] Length = 462 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/257 (32%), Positives = 138/257 (53%), Gaps = 13/257 (5%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI++ K + KL AK+ AE+ + KS FLA +SHEIRTPL AI+GFS ++ + Sbjct: 207 TAWDITDLKIMERKLRLAKEEAEESNRIKSAFLANMSHEIRTPLNAIVGFSSILTTE--- 263 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + +EY + I+R+ L+L ++ND+LD+SKIE+G + + V +++ VSE Sbjct: 264 -VSEEERVEYLDIIERNNELLLQLINDILDLSKIEAGTLEYVYANVDINKMVSEIEQATS 322 Query: 677 LYANEKRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 + K + + T +P +L D R + Q+ N +SNA+ FT + G I I N Sbjct: 323 IRLTNKDVRLVT--VTPLPGLLLYTDQRRITQVFNNFISNALKFT-AAGSITIGYGMPEN 379 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + V DTG G+++ + F ++ + +Q GTGLGL +++ +V G+ + Sbjct: 380 SYIRFYVTDTGTGISSENAQGIFNRFVKLDSFKQ----GTGLGLAISQNIVKELKGEIGV 435 Query: 795 FSTPAKGTLIEIIFPLY 811 S +KG+ P Y Sbjct: 436 ESQLSKGSTFWFTLPFY 452 >gi|307152388|ref|YP_003887772.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306982616|gb|ADN14497.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1308 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/253 (32%), Positives = 144/253 (56%), Gaps = 12/253 (4%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI++ KQ + +L A+K A + KS FLA +SHE+RTPL AI+GF++++ Sbjct: 819 TIFDITKRKQAELELQKAQKEAIAANRAKSIFLANMSHELRTPLNAILGFTQLLGRDH-- 876 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P ++E I+RSG +L +++D+LD+SKIE+GK+ L + ++Q Sbjct: 877 -CLRPEHLERLQIINRSGEHLLGLIDDILDLSKIETGKIAAFLTGFDLYHLLVTVEEMLQ 935 Query: 677 LYANEK--RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII---STT 730 A + R++I SF ++P+ I D + ++Q+ +N+L+NAI FT G I+ Sbjct: 936 PKAKTRGLRLIIEKSF--DLPQYIKTDEKKLRQVLINLLNNAIKFTQEGTVILRVKPKAA 993 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + ++ V DTGVGM ++++ K F Q +++ +GTGLGL +++ V G Sbjct: 994 ENTPQRLVFEVEDTGVGMAPDDIDQLFKVFVQAEAGKKLN-QGTGLGLAISQKFVQLMGG 1052 Query: 791 KFYIFSTPAKGTL 803 + + ST KG++ Sbjct: 1053 EIEVKSTLGKGSV 1065 Score = 38.1 bits (87), Expect = 6.4, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 +L IL+ SD I ++ + I+ N+ K+FGY V+++L KP ++ L Sbjct: 462 RLSGILKIASDAIVSVDHQQKIILFNQEAEKVFGYSVKEVLGKPLSLLL 510 >gi|170741503|ref|YP_001770158.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168195777|gb|ACA17724.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 973 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 129/255 (50%), Gaps = 4/255 (1%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+++ +++ L A+ AE + K++FLA +SHE+RTPLT ++G +++ Sbjct: 560 AIRDVTQRVRQERHLERARVEAEAGARAKAEFLANMSHELRTPLTGMLGVHDLLAGDASL 619 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + A RS +L IVND+LD SKIE+G+M + P SL V +LV Sbjct: 620 SDAQRHLVGLAQEAGRS---LLAIVNDILDFSKIEAGQMAIESVPFSLRALVESCRALVA 676 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A +K + + T + P R + D ++QI LN+ SNA+ FTP G + S Sbjct: 677 ESAKDKPLRLVTDIEGDAPDRFVGDPTRLRQILLNLASNAVKFTPRGEITMRVGFAASTG 736 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V + V DTG+G+ +L + F Q S R GTGLGL + K +V+ G + Sbjct: 737 RVRVAVTDTGIGIPADKLPLLFERFSQADASTTRRYGGTGLGLVICKRLVELMGGTIGVE 796 Query: 796 STPAKGTLIEIIFPL 810 S P +G+ PL Sbjct: 797 SVPGRGSTFWFELPL 811 >gi|110806548|ref|YP_690068.1| hybrid sensory histidine kinase BarA [Shigella flexneri 5 str. 8401] gi|110616096|gb|ABF04763.1| sensor-regulator [Shigella flexneri 5 str. 8401] Length = 918 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR----DHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|194434684|ref|ZP_03066938.1| sensor histidine kinase/response regulator BarA [Shigella dysenteriae 1012] gi|194417081|gb|EDX33196.1| sensor histidine kinase/response regulator BarA [Shigella dysenteriae 1012] gi|332089100|gb|EGI94210.1| signal transduction histidine-protein kinase barA [Shigella dysenteriae 155-74] Length = 918 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR----DHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|323967240|gb|EGB62664.1| TMAO reductase sytem sensor TorS [Escherichia coli M863] Length = 914 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 87/250 (34%), Positives = 135/250 (54%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 432 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 487 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ ++ I + Sbjct: 488 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKDRPIRLA 544 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ +L V D+G Sbjct: 545 TAIADDVPTALMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRTDGEQWLLEVEDSGC 602 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 603 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 658 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 659 RLPLRIATAP 668 >gi|163795798|ref|ZP_02189762.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159178831|gb|EDP63367.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 621 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/236 (33%), Positives = 125/236 (52%), Gaps = 7/236 (2%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE K+ LA VSHE+RTPL AIIGFS+VI+ Q GP+G RY+EYAN I SG + Sbjct: 371 AEDLHRAKAALLAHVSHELRTPLNAIIGFSDVIRAQLLGPIGQSRYLEYANDIWASGRSL 430 Query: 638 LDIVNDLLDISK--IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN--N 693 L +++ +L++S+ + S + E +S+ E S A+ +V + +R R F N Sbjct: 431 LGLIDRVLEVSRSDLSSDVHDDDEEWLSVSELASRALDIVSAASTGRR---RRVFDAEPN 487 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 +P + Q+ +N++ NA FT G + +S T + + + V+D G+GM + ++ Sbjct: 488 LPLVRLHRARFMQVLINLIDNAEKFTDDNGLVQVSVTVDAQSRLTIAVQDDGIGMNDDDI 547 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 FG+ + + G GLGL L ++VD K I S +GT + + P Sbjct: 548 ATCTSAFGRSRDPLVRQRNGVGLGLSLVASIVDRLGAKLTIDSRLGRGTRVSVTLP 603 >gi|332704569|ref|ZP_08424657.1| histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554718|gb|EGJ51762.1| histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 549 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 134/246 (54%), Gaps = 17/246 (6%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPLGNPRYIEY 626 + L AK AE S KS+FLA++SHEIRTP+ +IG +E+ ++ R PR +EY Sbjct: 163 EQALRQAKAEAEAASQAKSEFLAKMSHEIRTPINGVIGMAELALRASR-----EPRILEY 217 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I SG +L I+ND+L++SKIE+GK+ L P L + + ++ + K + + Sbjct: 218 LGLIKTSGTQLLRIINDILNLSKIEAGKVELEARPFDLRGDLEDTLATLAPSVQAKSLRL 277 Query: 687 RTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--------EV 737 + +IP ++ D ++Q+ N++ NA+ +T G +I + ++E + Sbjct: 278 VHTVDGDIPAHLVGDSARLRQVITNLVGNAVKYTHKG--LITLSVRLADEAADQSGGMRL 335 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + +VRD+G+G+ +L + F Q+ + + I GTGLGL +++ V+ G+ + S Sbjct: 336 LFQVRDSGIGIPQDKLADIFESFTQVNSPEMINSAGTGLGLAISRHYVELMDGRIWAESE 395 Query: 798 PAKGTL 803 P G++ Sbjct: 396 PGTGSI 401 >gi|302035962|ref|YP_003796284.1| putative histidine kinase [Candidatus Nitrospira defluvii] gi|300604026|emb|CBK40358.1| putative Histidine kinase [Candidatus Nitrospira defluvii] Length = 1610 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 111/403 (27%), Positives = 192/403 (47%), Gaps = 34/403 (8%) Query: 426 ENMPQNGIEPEDVDTRIN-KRKMEIEVMQLCSIL-EATSDGIAIINREGIILSTNRAVSK 483 E P + D+ R + +R + +QL +IL AT+ I N EG I + N + Sbjct: 905 EGKPAIQVIATDIRARKDLERALLATNLQLQTILASATNVSIVATNTEGTITTFNTGAEE 964 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL------DLRQTLEKITLGSTKEEK 537 L GY ++++ + + L + P ++ + E+ L + +E G E + Sbjct: 965 LLGYTSDEMIGQQSLILL--HVPEEIDRHAKELSDLYERPIQGVAALVEHANRGGFDERE 1022 Query: 538 L---------LSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 L++ + I L S + + DI+ K ++ L+ A+ A + + Sbjct: 1023 WTYQRKDGSRLTVLVTITALRDSDGVVTGFLAMGKDITSRKAAEHALAEARDEALRAAQV 1082 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K+DFLA +SHEIRTP+ AIIG + ++ + E+A+ + RS + +L ++ND+ Sbjct: 1083 KADFLATMSHEIRTPMNAIIGMTGLLLDTAL----TKEQHEFADSVRRSSDGLLTLLNDI 1138 Query: 645 LDISKIESGKMNLHFE--PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADL 701 LD SKIE+GK LHFE P L V + + L+ A K + + +P ++ D Sbjct: 1139 LDFSKIEAGK--LHFEQLPFDLRMTVEDTVELLAEQAQSKGLELIGLVDAAVPTAVVGDP 1196 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKP 759 ++QI +N++ NAI FT +G + T T +LR ++DTG+G+ + Sbjct: 1197 GRLRQILVNLVGNAIKFTAAGEVFLHVTRETQGGLDLLRFTIKDTGIGIPEAVQGRLFHA 1256 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 F Q +S R GTGLGL + + +V G+ + S +G+ Sbjct: 1257 FVQADSSTTRRFGGTGLGLAICQRLVSQMHGQIGVESHSGQGS 1299 >gi|238761632|ref|ZP_04622607.1| Signal transduction histidine-protein kinase barA [Yersinia kristensenii ATCC 33638] gi|238700146|gb|EEP92888.1| Signal transduction histidine-protein kinase barA [Yersinia kristensenii ATCC 33638] Length = 891 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 130/237 (54%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ Q P +Y Sbjct: 248 ELGLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTR----QTLKTSLTPTQTDYLQT 303 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RS N +L I+ND+LD SK+E+ K+ L P L A+ E I L+ A+EK + + Sbjct: 304 IQRSANNLLCIINDVLDFSKLEAEKLVLEHIPFPLRGALDEVIILLAHTAHEKGLELTLH 363 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV--ILRVRDTG 745 N++P +++ D ++QI N+L NAI FT G I+++T + ++V ++ + DTG Sbjct: 364 VNNDVPEQVIGDAMRLQQIVTNLLGNAIKFTEQGNIDILVATQAKTPQQVTLVVEIHDTG 423 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++ + + + F Q S R GTGLGL + + +V G S +G+ Sbjct: 424 IGISESQQAQLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVDRGS 480 >gi|167623448|ref|YP_001673742.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis HAW-EB4] gi|167353470|gb|ABZ76083.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis HAW-EB4] Length = 1180 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 99/361 (27%), Positives = 174/361 (48%), Gaps = 21/361 (5%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L + LE + D + I+ G + N A LF Y E ++ + L + H + Sbjct: 361 LLATLEGSRDALITIDITGEVQEVNDAACLLFKYHSEQMIGQRLESVLFAGEEKLHFHNI 420 Query: 514 TEILSLDLRQTLEKITL-------GSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEW 564 E + R T + + + S + K +++ + + + S LT + DIS Sbjct: 421 LE----EYRVTGKGVAIKHSTQMQASRSDGKAVAVEVTLIPVQLGSEMLLTAFIRDISRR 476 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + + +L AK+ AE+ S KS FLA +SHEIR+PL A++G ++I + R N Sbjct: 477 MEYETQLKLAKEQAEQGSEAKSRFLATMSHEIRSPLNAVLGSVDLILDSRL----NKEQR 532 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 YAN +G +L +ND+LD SKIE+G+M L S + ++ + ++ A +K I Sbjct: 533 IYANTAKEAGTSLLSTINDILDFSKIEAGQMVLEESAFSPAKLATQVLQVLSPKAQDKGI 592 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL--RV 741 ++ N+P ++ D + ++Q+ N++ NAI F+ GG + I +E L ++ Sbjct: 593 VLAIMVNRNVPESLVGDGQRLRQVLHNLIDNAIKFS-FGGCVAIEMWLADTDEARLCCKI 651 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D G+G++ L + F Q+ +S GTGLGL + ++ G+ + S KG Sbjct: 652 SDQGIGISEQALPTLFEEFSQVHDSHNTNYSGTGLGLAICAELIAQMGGQIAVKSQQGKG 711 Query: 802 T 802 + Sbjct: 712 S 712 Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 38/62 (61%) Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 ++L +IL+ DG +++ +G+I N AVS+LFGY +++ + ++ + N +V + Sbjct: 231 IRLNAILQTAVDGFVVVDTKGLIEEVNPAVSRLFGYKASELIGQNVSLLMPTNERNVHDE 290 Query: 512 YL 513 Y+ Sbjct: 291 YI 292 >gi|17229338|ref|NP_485886.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130936|dbj|BAB73545.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 680 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/270 (30%), Positives = 141/270 (52%), Gaps = 16/270 (5%) Query: 554 YSLTMHDISEWKQEKNKLSH------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 Y T+ DI+ KQ + + A++ AE + K +FLA +SHE+RTPLT+++G+S Sbjct: 257 YVGTLEDITARKQSEEIRAQVIREQTARQEAEATNRMKDEFLAVLSHELRTPLTSMLGWS 316 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 ++++ ++ R +E I+R+ N + ++ D+LD+S+I G++ L+ PV+L Sbjct: 317 KILRAKKLDEKATARALEA---IERNANSQVQLIEDILDVSRIIRGQLRLNLSPVNLITV 373 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 V A+ V+ A+ K + I T + + D ++QI N+L+NAI FTP GQ+ I Sbjct: 374 VEAALEAVRPLADTKNMTINTVLDYTLSPVSGDFARLQQIVWNLLTNAIKFTPKEGQVEI 433 Query: 728 STTHTSNE------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 + E ++V DTGVG+ + L K + F Q ++ G GLGL + Sbjct: 434 RLEGINGELSDDLTHAQIQVIDTGVGIASEFLPKVFERFRQADSTTTRSHNGLGLGLAIV 493 Query: 782 KAMVDANMGKFYIFS-TPAKGTLIEIIFPL 810 + +V+ + G S KG + FPL Sbjct: 494 RHLVELHNGTILAESPGVGKGATFTVRFPL 523 >gi|254696348|ref|ZP_05158176.1| sensory box histidine kinase, hypothetical [Brucella abortus bv. 2 str. 86/8/59] Length = 581 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 86/254 (33%), Positives = 140/254 (55%), Gaps = 4/254 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT D+++ + + L + E K+DF+ VS+E+R+PLT IIGF+E+++ F Sbjct: 321 LTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAF 380 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L N R +EY +YI S +++L IVND+LD++ +++G M L VS+ EA+S A S V Sbjct: 381 GSL-NERQLEYLDYISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRV 439 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + I + A+++ AD V+Q+ N+LSNA+++ P G I++ Sbjct: 440 SERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVAR-DGA 498 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +V+ V D G GM + L+ K F PN + G GLGL + K+ V+ + G+ I Sbjct: 499 DVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRR--RGAGLGLAIVKSFVELHGGRVEID 556 Query: 796 STPAKGTLIEIIFP 809 + +GT + FP Sbjct: 557 TGEERGTTVICRFP 570 >gi|330507655|ref|YP_004384083.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6] gi|328928463|gb|AEB68265.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6] Length = 1202 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 135/243 (55%), Gaps = 9/243 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E K+ + KL A++ A+ S +FLA +SHEIRTP+ ++IG + ++ +P Sbjct: 801 EHKETEKKLLQAQQAADAASRSMGEFLAYMSHEIRTPMNSVIGLAGLLLETNL----SPE 856 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +Y I SG+ +L I+ND+LD SKI GKM L EP SL + + +I++V A EK Sbjct: 857 QRDYVQTIHSSGDALLSIINDILDFSKINEGKMKLELEPFSLRKCIDRSINMVAAKAAEK 916 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR- 740 + + + +P+ ++ D ++QI +N+L NA+ FT G ++ +E +L Sbjct: 917 GLEMGFYLDDLVPQTVVGDSVRLQQILVNLLGNAVKFTERG--MVSLEVKMGDEPGMLHF 974 Query: 741 -VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G++ +++K F Q+ S + GTGLGL +++ +V+ G+ ++ S Sbjct: 975 SVTDTGIGISKSDMKKLFHSFSQVDASTSRKYGGTGLGLAISRMLVEQMGGRIWVESEMG 1034 Query: 800 KGT 802 G+ Sbjct: 1035 SGS 1037 >gi|215488103|ref|YP_002330534.1| hybrid sensory histidine kinase BarA [Escherichia coli O127:H6 str. E2348/69] gi|215266175|emb|CAS10601.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli O127:H6 str. E2348/69] Length = 918 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR----DHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|333001143|gb|EGK20713.1| signal transduction histidine-protein kinase barA [Shigella flexneri K-272] gi|333015782|gb|EGK35119.1| signal transduction histidine-protein kinase barA [Shigella flexneri K-227] Length = 918 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR----DHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|320173230|gb|EFW48440.1| hybrid sensory histidine kinase BarA [Shigella dysenteriae CDC 74-1112] Length = 918 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTEL----TPTQRDHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|284922723|emb|CBG35811.1| two-component sensor kinase/response regulator [Escherichia coli 042] Length = 918 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR----DHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|260869464|ref|YP_003235866.1| hybrid sensory histidine kinase BarY, in two-component regulatory system with UvrY [Escherichia coli O111:H- str. 11128] gi|257765820|dbj|BAI37315.1| hybrid sensory histidine kinase BarY, in two-component regulatory system with UvrY [Escherichia coli O111:H- str. 11128] Length = 918 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR----DHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|253772363|ref|YP_003035194.1| hybrid sensory histidine kinase BarA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162712|ref|YP_003045820.1| hybrid sensory histidine kinase BarA [Escherichia coli B str. REL606] gi|242378333|emb|CAQ33110.1| BarA sensory histidine kinase [Escherichia coli BL21(DE3)] gi|253323407|gb|ACT28009.1| Hpt sensor hybrid histidine kinase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974613|gb|ACT40284.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli B str. REL606] gi|253978778|gb|ACT44448.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli BL21(DE3)] Length = 918 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR----DHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|221236136|ref|YP_002518573.1| hybrid sensor histidine kinase/receiver domain-containing protein [Caulobacter crescentus NA1000] gi|220965309|gb|ACL96665.1| hybrid sensor histidine kinase/receiver domain protein [Caulobacter crescentus NA1000] Length = 574 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 12/225 (5%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S KS FLA +SHE+RTP+ ++G + ++ + + + EY I++SG+ ++ I+ Sbjct: 197 SRAKSAFLAMMSHELRTPMNGVLGLAHALRGTKL----DAQQSEYLEMIEQSGHGLMTIL 252 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI----LIRTSFANNIPRI 697 ND+LD+SKIE+GK+NL P L + A+ +++ R+ LI + P + Sbjct: 253 NDILDLSKIEAGKLNLEVAPFDLRKL---ALQTRAVWSESARLKGLDLILEVSPSAPPWV 309 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D V+QI +N++SNA+ FT SG +++I + V L V DTGVGMT ++ + Sbjct: 310 SGDATRVRQILMNLVSNALKFTESG-RVVIRLGGEAGGVVTLSVTDTGVGMTAEQIGRLF 368 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 PF Q S R GTGLGL + + + + G+ + S P G+ Sbjct: 369 TPFAQGDASIARRFGGTGLGLSICRQLAELMAGEIIVSSEPGVGS 413 >gi|326795319|ref|YP_004313139.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] gi|326546083|gb|ADZ91303.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] Length = 1479 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/257 (32%), Positives = 139/257 (54%), Gaps = 12/257 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ K+ + L AK+ AE S KSDFLA +SHEIRTPL ++G +E++ + Sbjct: 801 DITTRKETELVLQKAKEQAELTSKAKSDFLATMSHEIRTPLNGVLGMAELMSHTDL---- 856 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +P + + I SG +L+++N++LD SKIE+G + L +L++A+ + L+ + A Sbjct: 857 SPEQLTQLDVIRDSGEGLLELINEILDFSKIEAGHLVLESIDFNLEKAIFDIAHLLIVKA 916 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSN 734 +K I + F PR+L D+ +KQI N++SNAI FT S G+++I + + Sbjct: 917 EDKGIELLVEFEQRCPRMLVGDVYRIKQIITNLVSNAIKFT-SEGEVVIRVSGKPLPSGG 975 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 ++ L V DTG+G+ K F Q +S + GTGLGL + + + G + Sbjct: 976 VDLRLSVSDTGIGIQESVQRNLFKAFTQADSSTTRQYGGTGLGLAITSQLTNLMDGTIEV 1035 Query: 795 FSTPAKGTL--IEIIFP 809 S KG+ + ++ P Sbjct: 1036 ESQLGKGSCFSVSMVLP 1052 Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 28/43 (65%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 SIL ++ DGI I+ EG I N+AV+KL Y E+++ +PF Sbjct: 436 SILASSHDGIIGIDSEGQITFVNQAVAKLVSYSQEELVGRPFV 478 >gi|323172911|gb|EFZ58542.1| signal transduction histidine-protein kinase barA [Escherichia coli LT-68] Length = 918 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR----DHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|317494185|ref|ZP_07952601.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917958|gb|EFV39301.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 593 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 104/406 (25%), Positives = 200/406 (49%), Gaps = 38/406 (9%) Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINR 470 ++ +PF+ + P P G E E + +IN ++ + + I+E+ +DG+ ++ Sbjct: 210 LSKLPFDLNTKMP---PLKG-EMEGIADKINHLAYALKEAKTLNELIIESAADGMISVDV 265 Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530 G I+ N A + GY + ++ + E++ Y + +L L+ +E + + Sbjct: 266 NGRIIMCNPAAVNITGYSLVELFDHDYAAIFEKD------EYRSPLLD-TLKHGVEHVGV 318 Query: 531 GST--KEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 + +E++L ++ +L S + D++E K+ + ++ A+++A Sbjct: 319 EVSYPAKERVLQIKASSSQLRNSDDEIIGALVIFTDLTEQKEMQRHIAQAERLATL---- 374 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 + +A V+HE+R PLTAI GF + +K +P+ IEY + I + ++ L Sbjct: 375 -GELMAGVAHEVRNPLTAISGFIQYLKQGE----SDPQRIEYIDIIIHEVRSINKVIQQL 429 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD ++ +S F+ VS+++ + E + LVQ RI S +P + D + Sbjct: 430 LDFARPQSR----LFQEVSINQIIKETLVLVQTNGVNSRIDFSISLDETLPALEVDASGL 485 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 KQ+ LN+L NA+ P+ G+I I TT + E++ + ++DTG GM++ +K PF Sbjct: 486 KQVFLNLLINAVQSIPAKGEISIETTRLTMEKIQITIKDTGGGMSDDVQKKIFMPFF--- 542 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + +GTGLGL + + +++ + G I S +GT + II PL Sbjct: 543 ---TTKSQGTGLGLSIVQRIINDHSGDVIIESKIHQGTKVMIILPL 585 >gi|301645250|ref|ZP_07245202.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 146-1] gi|307139472|ref|ZP_07498828.1| hybrid sensory histidine kinase BarA [Escherichia coli H736] gi|331643471|ref|ZP_08344602.1| signal transduction histidine-protein kinase BarA [Escherichia coli H736] gi|301076453|gb|EFK91259.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 146-1] gi|331036942|gb|EGI09166.1| signal transduction histidine-protein kinase BarA [Escherichia coli H736] Length = 918 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR----DHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|298491263|ref|YP_003721440.1| signal transduction histidine kinase with CheB and CheR activity ['Nostoc azollae' 0708] gi|298233181|gb|ADI64317.1| signal transduction histidine kinase with CheB and CheR activity ['Nostoc azollae' 0708] Length = 1407 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 140/253 (55%), Gaps = 12/253 (4%) Query: 556 LTMHDISEWKQ---EKNKL----SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 L + DI++ KQ E+ +L A+ AE + K +FL+ +SHE+R PL ++G+++ Sbjct: 985 LVIEDITQRKQLEAERTQLLAQEQSARTAAETANCAKDEFLSVLSHELRNPLNCLLGWTQ 1044 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 +++ Q+ + +E I+RS ++ DLLDIS+I G+M L +PV L + Sbjct: 1045 LLRKQQLDEAKTNQALEA---IERSAKAQHQLIGDLLDISRISVGQMRLEAQPVKLIPVI 1101 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 AI +VQL A+ K I I++ + ++ D ++Q+ N+LSN+I FTP GG+I I+ Sbjct: 1102 EAAIDVVQLAADAKNIQIQSRLDSAGRTLVGDQIRLQQVIWNLLSNSIKFTPVGGRIDIT 1161 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 ++ + I +VRDTGVG++ L F Q S G GLGL + + +V+ + Sbjct: 1162 LDYSPFQGEI-QVRDTGVGISADFLPYIFDRFRQADRSPTRSNTGLGLGLSIVRHLVELH 1220 Query: 789 MGKFYIFSTPAKG 801 G + ++P +G Sbjct: 1221 GGTVEV-TSPGEG 1232 >gi|110642927|ref|YP_670657.1| hybrid sensory histidine kinase BarA [Escherichia coli 536] gi|191171166|ref|ZP_03032716.1| sensor histidine kinase/response regulator BarA [Escherichia coli F11] gi|300976311|ref|ZP_07173375.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 200-1] gi|110344519|gb|ABG70756.1| sensor protein BarA [Escherichia coli 536] gi|190908466|gb|EDV68055.1| sensor histidine kinase/response regulator BarA [Escherichia coli F11] gi|300308553|gb|EFJ63073.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 200-1] gi|324015532|gb|EGB84751.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 60-1] Length = 918 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR----DHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|253701316|ref|YP_003022505.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21] gi|251776166|gb|ACT18747.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21] Length = 818 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 131/243 (53%), Gaps = 9/243 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + ++ ++ A + A+ + KSDFLA++SHEIRTP+ ++G +E++ N R Sbjct: 164 QLEESLEEVRRAMESAQSANRAKSDFLAQMSHEIRTPMYGVLGMTELLLNTDLSK-EQAR 222 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 ++E + RSG +L I+N++LD SKIE+G+M L P L + ++A+++ A +K Sbjct: 223 FVES---VRRSGEALLGIINNILDFSKIEAGRMELETIPFDLHQLAADAVAMFAEDAAKK 279 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR- 740 I + +P + D ++Q+ +N+L NA+ FTP G + + + E ++R Sbjct: 280 GIALSCRIEPGLPGMFQGDPGRLRQVMVNLLGNAVKFTPEGA--VTLSVSLAREPALVRV 337 Query: 741 -VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G++ E+ F Q S R GTGLGL +AK + + G + S P Sbjct: 338 TVEDTGIGISRESQERIFDHFAQGDESMTRRYGGTGLGLAIAKQLTELMGGVMELSSEPG 397 Query: 800 KGT 802 +G Sbjct: 398 EGA 400 >gi|82545085|ref|YP_409032.1| hybrid sensory histidine kinase BarA [Shigella boydii Sb227] gi|81246496|gb|ABB67204.1| sensor-regulator [Shigella boydii Sb227] Length = 918 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR----DHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|22298910|ref|NP_682157.1| two-component hybrid sensor and regulator [Thermosynechococcus elongatus BP-1] gi|22295091|dbj|BAC08919.1| two-component hybrid sensor and regulator [Thermosynechococcus elongatus BP-1] Length = 1060 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/220 (34%), Positives = 127/220 (57%), Gaps = 8/220 (3%) Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 S FLA +SHE+RTPL AI+GFS+++ + R P++ + I+RSG +L ++ND+L Sbjct: 604 SIFLANMSHELRTPLNAILGFSQILLSDR---TLAPQHRQTLEKINRSGEHLLGLINDVL 660 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSV 704 D++KIE+G+M L L + + ++++ A K + + A N+P + D + Sbjct: 661 DMAKIEAGRMILQQTTFDLRRMLRDLEEMLKVRAEAKGLRLVFDLAANLPVAVTTDEMKL 720 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQ 762 +Q+ +N+L N I FT G + + ++ + E + V DTG+GMT EL+ +PF Q Sbjct: 721 RQVLVNLLGNGIKFTKEGS-VCLKVSYRAQEPPRLAFEVSDTGIGMTPQELKMLFQPFVQ 779 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +S+++ EGTGLGL +++ V G + ST KG+ Sbjct: 780 TDSSKKV-SEGTGLGLAISRQFVQLMGGDIQVRSTKGKGS 818 >gi|193065094|ref|ZP_03046168.1| sensor histidine kinase/response regulator BarA [Escherichia coli E22] gi|192927225|gb|EDV81845.1| sensor histidine kinase/response regulator BarA [Escherichia coli E22] Length = 918 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR----DHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|15832900|ref|NP_311673.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str. Sakai] gi|16130693|ref|NP_417266.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli str. K-12 substr. MG1655] gi|26249187|ref|NP_755227.1| hybrid sensory histidine kinase BarA [Escherichia coli CFT073] gi|74313358|ref|YP_311777.1| hybrid sensory histidine kinase BarA [Shigella sonnei Ss046] gi|82778168|ref|YP_404517.1| hybrid sensory histidine kinase BarA [Shigella dysenteriae Sd197] gi|89109572|ref|AP_003352.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli str. K-12 substr. W3110] gi|157159173|ref|YP_001464108.1| hybrid sensory histidine kinase BarA [Escherichia coli E24377A] gi|157162240|ref|YP_001459558.1| hybrid sensory histidine kinase BarA [Escherichia coli HS] gi|168750997|ref|ZP_02776019.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4113] gi|168758477|ref|ZP_02783484.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4401] gi|168764499|ref|ZP_02789506.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4501] gi|168766754|ref|ZP_02791761.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4486] gi|168777593|ref|ZP_02802600.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4196] gi|168778774|ref|ZP_02803781.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4076] gi|168788044|ref|ZP_02813051.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC869] gi|168802533|ref|ZP_02827540.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC508] gi|170018968|ref|YP_001723922.1| hybrid sensory histidine kinase BarA [Escherichia coli ATCC 8739] gi|170082357|ref|YP_001731677.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli str. K-12 substr. DH10B] gi|170680902|ref|YP_001744948.1| hybrid sensory histidine kinase BarA [Escherichia coli SMS-3-5] gi|187732711|ref|YP_001881473.1| hybrid sensory histidine kinase BarA [Shigella boydii CDC 3083-94] gi|188492553|ref|ZP_02999823.1| sensor histidine kinase/response regulator BarA [Escherichia coli 53638] gi|191168547|ref|ZP_03030332.1| sensor histidine kinase/response regulator BarA [Escherichia coli B7A] gi|193071118|ref|ZP_03052043.1| sensor histidine kinase/response regulator BarA [Escherichia coli E110019] gi|194426308|ref|ZP_03058863.1| sensor histidine kinase/response regulator BarA [Escherichia coli B171] gi|194439650|ref|ZP_03071721.1| sensor histidine kinase/response regulator BarA [Escherichia coli 101-1] gi|195936388|ref|ZP_03081770.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str. EC4024] gi|208805653|ref|ZP_03247990.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4206] gi|208814172|ref|ZP_03255501.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4045] gi|208820939|ref|ZP_03261259.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4042] gi|209398921|ref|YP_002272251.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4115] gi|209920235|ref|YP_002294319.1| hybrid sensory histidine kinase BarA [Escherichia coli SE11] gi|217327442|ref|ZP_03443525.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. TW14588] gi|218555337|ref|YP_002388250.1| hybrid sensory histidine kinase BarA [Escherichia coli IAI1] gi|218706282|ref|YP_002413801.1| hybrid sensory histidine kinase BarA [Escherichia coli UMN026] gi|227888324|ref|ZP_04006129.1| hybrid sensory histidine kinase BarA [Escherichia coli 83972] gi|238901924|ref|YP_002927720.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli BW2952] gi|254037836|ref|ZP_04871894.1| sensor-regulator [Escherichia sp. 1_1_43] gi|254794728|ref|YP_003079565.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str. TW14359] gi|256019427|ref|ZP_05433292.1| hybrid sensory histidine kinase BarA [Shigella sp. D9] gi|256024711|ref|ZP_05438576.1| hybrid sensory histidine kinase BarA [Escherichia sp. 4_1_40B] gi|260845432|ref|YP_003223210.1| hybrid sensory histidine kinase BarY, in two-component regulatory system with UvrY [Escherichia coli O103:H2 str. 12009] gi|260856896|ref|YP_003230787.1| hybrid sensory histidine kinase BarY, in two-component regulatory system with UvrY [Escherichia coli O26:H11 str. 11368] gi|261226085|ref|ZP_05940366.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli O157:H7 str. FRIK2000] gi|261256660|ref|ZP_05949193.1| hybrid sensory histidine kinase BarY, in two-component regulatory system with UvrY [Escherichia coli O157:H7 str. FRIK966] gi|291284115|ref|YP_003500933.1| Signal transduction histidine-protein kinase barA [Escherichia coli O55:H7 str. CB9615] gi|293406278|ref|ZP_06650204.1| hybrid sensory histidine kinase BarA [Escherichia coli FVEC1412] gi|293412134|ref|ZP_06654857.1| signal transduction histidine-protein kinase barA [Escherichia coli B354] gi|293416033|ref|ZP_06658673.1| two-component system [Escherichia coli B185] gi|293449112|ref|ZP_06663533.1| two-component system [Escherichia coli B088] gi|298382015|ref|ZP_06991612.1| two-component system [Escherichia coli FVEC1302] gi|300815797|ref|ZP_07096021.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 107-1] gi|300820572|ref|ZP_07100723.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 119-7] gi|300898160|ref|ZP_07116522.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 198-1] gi|300906689|ref|ZP_07124377.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 84-1] gi|300923241|ref|ZP_07139295.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 182-1] gi|300950514|ref|ZP_07164424.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 116-1] gi|300958100|ref|ZP_07170260.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 175-1] gi|300976048|ref|ZP_07173263.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 45-1] gi|301026289|ref|ZP_07189744.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 196-1] gi|301027557|ref|ZP_07190890.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 69-1] gi|301049457|ref|ZP_07196415.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 185-1] gi|301304554|ref|ZP_07210664.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 124-1] gi|301325726|ref|ZP_07219183.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 78-1] gi|306812334|ref|ZP_07446532.1| hybrid sensory histidine kinase BarA [Escherichia coli NC101] gi|307312785|ref|ZP_07592415.1| multi-sensor hybrid histidine kinase [Escherichia coli W] gi|309786099|ref|ZP_07680728.1| signal transduction histidine-protein kinase barA [Shigella dysenteriae 1617] gi|309795252|ref|ZP_07689671.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 145-7] gi|312972998|ref|ZP_07787171.1| signal transduction histidine-protein kinase barA [Escherichia coli 1827-70] gi|331664346|ref|ZP_08365252.1| signal transduction histidine-protein kinase BarA [Escherichia coli TA143] gi|331669520|ref|ZP_08370366.1| signal transduction histidine-protein kinase BarA [Escherichia coli TA271] gi|331674279|ref|ZP_08375039.1| signal transduction histidine-protein kinase BarA [Escherichia coli TA280] gi|331678763|ref|ZP_08379437.1| signal transduction histidine-protein kinase BarA [Escherichia coli H591] gi|331684406|ref|ZP_08384998.1| signal transduction histidine-protein kinase BarA [Escherichia coli H299] gi|332280547|ref|ZP_08392960.1| hybrid sensory histidine kinase in two-component system response regulatory system with UvrY [Shigella sp. D9] gi|83288337|sp|P0AEC7|BARA_ECO57 RecName: Full=Signal transduction histidine-protein kinase BarA gi|83288338|sp|P0AEC6|BARA_ECOL6 RecName: Full=Signal transduction histidine-protein kinase BarA gi|83288339|sp|P0AEC5|BARA_ECOLI RecName: Full=Signal transduction histidine-protein kinase BarA gi|26109594|gb|AAN81797.1|AE016765_199 Sensor protein barA [Escherichia coli CFT073] gi|216535|dbj|BAA01710.1| sensor-regulator protein [Escherichia coli] gi|1789149|gb|AAC75828.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli str. K-12 substr. MG1655] gi|13363117|dbj|BAB37069.1| sensor-regulator protein barA [Escherichia coli O157:H7 str. Sakai] gi|73856835|gb|AAZ89542.1| sensor-regulator, activates OmpR by phophorylation [Shigella sonnei Ss046] gi|81242316|gb|ABB63026.1| sensor-regulator [Shigella dysenteriae Sd197] gi|85675605|dbj|BAA16571.2| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli str. K12 substr. W3110] gi|157067920|gb|ABV07175.1| sensor histidine kinase/response regulator BarA [Escherichia coli HS] gi|157081203|gb|ABV20911.1| sensor histidine kinase/response regulator BarA [Escherichia coli E24377A] gi|169753896|gb|ACA76595.1| multi-sensor hybrid histidine kinase [Escherichia coli ATCC 8739] gi|169890192|gb|ACB03899.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli str. K-12 substr. DH10B] gi|170518620|gb|ACB16798.1| sensor histidine kinase/response regulator BarA [Escherichia coli SMS-3-5] gi|187429703|gb|ACD08977.1| sensor histidine kinase/response regulator BarA [Shigella boydii CDC 3083-94] gi|187767204|gb|EDU31048.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4196] gi|188014881|gb|EDU53003.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4113] gi|188487752|gb|EDU62855.1| sensor histidine kinase/response regulator BarA [Escherichia coli 53638] gi|189003359|gb|EDU72345.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4076] gi|189354721|gb|EDU73140.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4401] gi|189363700|gb|EDU82119.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4486] gi|189365501|gb|EDU83917.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4501] gi|189372239|gb|EDU90655.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC869] gi|189375500|gb|EDU93916.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC508] gi|190901394|gb|EDV61158.1| sensor histidine kinase/response regulator BarA [Escherichia coli B7A] gi|192955579|gb|EDV86057.1| sensor histidine kinase/response regulator BarA [Escherichia coli E110019] gi|194415616|gb|EDX31883.1| sensor histidine kinase/response regulator BarA [Escherichia coli B171] gi|194421397|gb|EDX37413.1| sensor histidine kinase/response regulator BarA [Escherichia coli 101-1] gi|208725454|gb|EDZ75055.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4206] gi|208735449|gb|EDZ84136.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4045] gi|208741062|gb|EDZ88744.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4042] gi|209160321|gb|ACI37754.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. EC4115] gi|209761428|gb|ACI79026.1| sensor-regulator protein barA [Escherichia coli] gi|209761430|gb|ACI79027.1| sensor-regulator protein barA [Escherichia coli] gi|209761432|gb|ACI79028.1| sensor-regulator protein barA [Escherichia coli] gi|209761434|gb|ACI79029.1| sensor-regulator protein barA [Escherichia coli] gi|209761436|gb|ACI79030.1| sensor-regulator protein barA [Escherichia coli] gi|209913494|dbj|BAG78568.1| two-component sensor kinase [Escherichia coli SE11] gi|217319809|gb|EEC28234.1| sensor histidine kinase/response regulator BarA [Escherichia coli O157:H7 str. TW14588] gi|218362105|emb|CAQ99714.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli IAI1] gi|218433379|emb|CAR14281.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli UMN026] gi|226839460|gb|EEH71481.1| sensor-regulator [Escherichia sp. 1_1_43] gi|227834593|gb|EEJ45059.1| hybrid sensory histidine kinase BarA [Escherichia coli 83972] gi|238861442|gb|ACR63440.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli BW2952] gi|254594128|gb|ACT73489.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli O157:H7 str. TW14359] gi|257755545|dbj|BAI27047.1| hybrid sensory histidine kinase BarY, in two-component regulatory system with UvrY [Escherichia coli O26:H11 str. 11368] gi|257760579|dbj|BAI32076.1| hybrid sensory histidine kinase BarY, in two-component regulatory system with UvrY [Escherichia coli O103:H2 str. 12009] gi|260448163|gb|ACX38585.1| Hpt sensor hybrid histidine kinase [Escherichia coli DH1] gi|290763988|gb|ADD57949.1| Signal transduction histidine-protein kinase barA [Escherichia coli O55:H7 str. CB9615] gi|291322202|gb|EFE61631.1| two-component system [Escherichia coli B088] gi|291426284|gb|EFE99316.1| hybrid sensory histidine kinase BarA [Escherichia coli FVEC1412] gi|291432222|gb|EFF05204.1| two-component system [Escherichia coli B185] gi|291468905|gb|EFF11396.1| signal transduction histidine-protein kinase barA [Escherichia coli B354] gi|298277155|gb|EFI18671.1| two-component system [Escherichia coli FVEC1302] gi|299879748|gb|EFI87959.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 196-1] gi|300298688|gb|EFJ55073.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 185-1] gi|300315220|gb|EFJ65004.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 175-1] gi|300358135|gb|EFJ74005.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 198-1] gi|300394900|gb|EFJ78438.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 69-1] gi|300401524|gb|EFJ85062.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 84-1] gi|300410145|gb|EFJ93683.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 45-1] gi|300420480|gb|EFK03791.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 182-1] gi|300450174|gb|EFK13794.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 116-1] gi|300526836|gb|EFK47905.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 119-7] gi|300531726|gb|EFK52788.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 107-1] gi|300840158|gb|EFK67918.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 124-1] gi|300847476|gb|EFK75236.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 78-1] gi|305854372|gb|EFM54810.1| hybrid sensory histidine kinase BarA [Escherichia coli NC101] gi|306907220|gb|EFN37726.1| multi-sensor hybrid histidine kinase [Escherichia coli W] gi|307554758|gb|ADN47533.1| sensor-regulator [Escherichia coli ABU 83972] gi|308121223|gb|EFO58485.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 145-7] gi|308926210|gb|EFP71688.1| signal transduction histidine-protein kinase barA [Shigella dysenteriae 1617] gi|309703144|emb|CBJ02478.1| two-component sensor kinase/response regulator [Escherichia coli ETEC H10407] gi|310332940|gb|EFQ00154.1| signal transduction histidine-protein kinase barA [Escherichia coli 1827-70] gi|315137393|dbj|BAJ44552.1| signal transduction histidine-protein kinase [Escherichia coli DH1] gi|315256645|gb|EFU36613.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 85-1] gi|315293741|gb|EFU53093.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 153-1] gi|315615172|gb|EFU95809.1| signal transduction histidine-protein kinase barA [Escherichia coli 3431] gi|320189119|gb|EFW63778.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str. EC1212] gi|320202430|gb|EFW77000.1| hybrid sensory histidine kinase BarA [Escherichia coli EC4100B] gi|320640434|gb|EFX09973.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str. G5101] gi|320645681|gb|EFX14666.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H- str. 493-89] gi|320650981|gb|EFX19421.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H- str. H 2687] gi|320662373|gb|EFX29770.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str. USDA 5905] gi|320667071|gb|EFX34034.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str. LSU-61] gi|323154830|gb|EFZ41023.1| signal transduction histidine-protein kinase barA [Escherichia coli EPECa14] gi|323159899|gb|EFZ45869.1| signal transduction histidine-protein kinase barA [Escherichia coli E128010] gi|323167874|gb|EFZ53565.1| signal transduction histidine-protein kinase barA [Shigella sonnei 53G] gi|323183325|gb|EFZ68722.1| signal transduction histidine-protein kinase barA [Escherichia coli 1357] gi|323188798|gb|EFZ74083.1| signal transduction histidine-protein kinase barA [Escherichia coli RN587/1] gi|323935852|gb|EGB32155.1| hsp90-like protein [Escherichia coli E1520] gi|323946491|gb|EGB42517.1| hsp90-like protein [Escherichia coli H120] gi|323960696|gb|EGB56320.1| hsp90-like protein [Escherichia coli H489] gi|323971612|gb|EGB66843.1| hsp90-like protein [Escherichia coli TA007] gi|324005670|gb|EGB74889.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 57-2] gi|324016361|gb|EGB85580.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 117-3] gi|324119828|gb|EGC13707.1| hsp90-like protein [Escherichia coli E1167] gi|326339142|gb|EGD62957.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str. 1044] gi|326342975|gb|EGD66743.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str. 1125] gi|331058277|gb|EGI30258.1| signal transduction histidine-protein kinase BarA [Escherichia coli TA143] gi|331063188|gb|EGI35101.1| signal transduction histidine-protein kinase BarA [Escherichia coli TA271] gi|331068373|gb|EGI39768.1| signal transduction histidine-protein kinase BarA [Escherichia coli TA280] gi|331073593|gb|EGI44914.1| signal transduction histidine-protein kinase BarA [Escherichia coli H591] gi|331078021|gb|EGI49227.1| signal transduction histidine-protein kinase BarA [Escherichia coli H299] gi|332092168|gb|EGI97246.1| signal transduction histidine-protein kinase barA [Shigella boydii 3594-74] gi|332102899|gb|EGJ06245.1| hybrid sensory histidine kinase in two-component system response regulatory system with UvrY [Shigella sp. D9] gi|332344677|gb|AEE58011.1| signal transduction histidine-protein kinase BarA [Escherichia coli UMNK88] Length = 918 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR----DHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|331654269|ref|ZP_08355269.1| signal transduction histidine-protein kinase BarA [Escherichia coli M718] gi|331047651|gb|EGI19728.1| signal transduction histidine-protein kinase BarA [Escherichia coli M718] Length = 918 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR----DHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|168704913|ref|ZP_02737190.1| two-component system sensory histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 545 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/246 (32%), Positives = 133/246 (54%), Gaps = 11/246 (4%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN-P 621 E E N+L AK+ AE+ KS FLA VSHE+RTPLT IIG+SE++ Q + N P Sbjct: 295 EKDDETNRLRVAKEAAEEADRTKSGFLATVSHELRTPLTTIIGYSEMLLEQ--AAVDNLP 352 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 +Y + +G +L ++ND+LD SKIE+GK+ + +P + + + + V+ A + Sbjct: 353 QYTADLQQVHSAGQHLLALINDILDFSKIEAGKLEIANDPYAPASLIHDLMVSVEPLAKK 412 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-----TSNEE 736 I ++ R + D ++Q LN++ NA FT G ++ T + + Sbjct: 413 NNNRIELDCPPDLGRAMGDPTRIRQCVLNLVGNACKFTRDG---LVKVTARRAPVSGVDS 469 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V + V DTG+GMT ++ + + F Q+ ++ + GTGLGL +++ + A G+ + S Sbjct: 470 VQVAVSDTGIGMTPEQVGRLFQAFTQVDSTAGRKFGGTGLGLAISQRLCAAMGGQITVRS 529 Query: 797 TPAKGT 802 P KG+ Sbjct: 530 EPGKGS 535 >gi|120600688|ref|YP_965262.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1] gi|120560781|gb|ABM26708.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1] Length = 1189 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 86/263 (32%), Positives = 142/263 (53%), Gaps = 24/263 (9%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI----KNQRF 615 D+S+ + +L HAK++A+ S KS FLA +SHEIRTP+ AIIG E++ +Q+F Sbjct: 677 DVSDRVKLIEELEHAKEVADSASQAKSTFLATMSHEIRTPMNAIIGMLELVLQRTNSQQF 736 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 N + Y S N +L+++ D+LDI++IE+G+++L +L + + + Sbjct: 737 DL--NSIKVAY-----DSANDLLELIGDILDIARIEAGQLSLSPIRTNLKAITTSVVRVF 789 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-------QIII 727 A +K I ++ F I +L D +KQI N++ NAI FT SGG + + Sbjct: 790 DGLARQKGITLQLDFDPTITNDVLVDPMRIKQILSNLIGNAIKFTDSGGVKVEIQSENVT 849 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 +TTHT ++ V DTG+G++ + EK PF Q + G GTGLGL +++++ + Sbjct: 850 NTTHT----ILFTVTDTGIGISEDDQEKLFSPFSQAHGTHNTHG-GTGLGLMISRSLCEM 904 Query: 788 NMGKFYIFSTPAKGTLIEIIFPL 810 G + S +GT + + L Sbjct: 905 MGGSLILKSKLYQGTQVRMELTL 927 >gi|15803307|ref|NP_289340.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 EDL933] gi|25308230|pir||G85929 hypothetical protein barA [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12517258|gb|AAG57899.1|AE005506_7 sensor-regulator, activates OmpR by phophorylation [Escherichia coli O157:H7 str. EDL933] Length = 918 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR----DHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|312964948|ref|ZP_07779188.1| signal transduction histidine-protein kinase barA [Escherichia coli 2362-75] gi|312290504|gb|EFR18384.1| signal transduction histidine-protein kinase barA [Escherichia coli 2362-75] Length = 918 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR----DHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|91212153|ref|YP_542139.1| hybrid sensory histidine kinase BarA [Escherichia coli UTI89] gi|117625014|ref|YP_854002.1| hybrid sensory histidine kinase BarA [Escherichia coli APEC O1] gi|218559774|ref|YP_002392687.1| hybrid sensory histidine kinase BarA [Escherichia coli S88] gi|218690909|ref|YP_002399121.1| hybrid sensory histidine kinase BarA [Escherichia coli ED1a] gi|237706586|ref|ZP_04537067.1| sensor-regulator [Escherichia sp. 3_2_53FAA] gi|331658897|ref|ZP_08359839.1| signal transduction histidine-protein kinase BarA [Escherichia coli TA206] gi|91073727|gb|ABE08608.1| sensor-regulator, activates OmpR by phophorylation [Escherichia coli UTI89] gi|115514138|gb|ABJ02213.1| BarA, sensory histidine kinase; two-component regulator with UvrY [Escherichia coli APEC O1] gi|218366543|emb|CAR04296.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli S88] gi|218428473|emb|CAR09399.2| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia coli ED1a] gi|222034477|emb|CAP77219.1| Signal transduction histidine-protein kinase barA [Escherichia coli LF82] gi|226899626|gb|EEH85885.1| sensor-regulator [Escherichia sp. 3_2_53FAA] gi|294490869|gb|ADE89625.1| sensor histidine kinase/response regulator BarA [Escherichia coli IHE3034] gi|307625645|gb|ADN69949.1| hybrid sensory histidine kinase BarA [Escherichia coli UM146] gi|312947313|gb|ADR28140.1| hybrid sensory histidine kinase BarA [Escherichia coli O83:H1 str. NRG 857C] gi|315289301|gb|EFU48696.1| response regulator receiver domain protein [Escherichia coli MS 110-3] gi|315298721|gb|EFU57975.1| response regulator receiver domain protein [Escherichia coli MS 16-3] gi|320194925|gb|EFW69554.1| hybrid sensory histidine kinase BarA [Escherichia coli WV_060327] gi|323950997|gb|EGB46873.1| hsp90-like protein [Escherichia coli H252] gi|323957202|gb|EGB52926.1| hsp90-like protein [Escherichia coli H263] gi|331053479|gb|EGI25508.1| signal transduction histidine-protein kinase BarA [Escherichia coli TA206] Length = 918 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR----DHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSLPNRGS 510 >gi|148263562|ref|YP_001230268.1| multi-sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146397062|gb|ABQ25695.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] Length = 679 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 109/458 (23%), Positives = 227/458 (49%), Gaps = 17/458 (3%) Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 K + DI+ L T+L P LS N I +M+ ++ +S L Q + S Sbjct: 234 KYISDID----LDTILVVPILSQNEIIGSLMVRTTNDRNSFSSRELRFCQLVADASAN-- 287 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474 + A+QF + + ++ E ++ ++ K E V + S+ E S+G+ ++N G Sbjct: 288 --AIKNASQFKKVLEESD-ELREIKEKLEKELAEKAVYE--SLFEHASEGLMVLNARGEP 342 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV-MNHYLTEILSLDLRQTLEKITLGST 533 + NR+ + GY + +L+ T FL + + V M +++ L + R + + Sbjct: 343 VYVNRSALDILGYQRDQMLKMTLTDFLAEESFQVGMENHMNFFLGRNFRNKYDLLFKTKC 402 Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 E++ +++ + +L + LT D++E ++ +++L+ A + + + KS+F+ + Sbjct: 403 GEKRCVAVSVSNYRLEGNYAI-LTFMDVTEERRAQHQLAEANERLKGVNHLKSEFIYTAT 461 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 +++R P+ I +++ L + + ID S + ++D++ +LLD S +S Sbjct: 462 NDLRLPVAVIHSNCSQLRDSDTNNLTEMQREHLDSAID-SCDRLMDLIEELLDNSNFDSS 520 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNIL 712 ++ L E ++ E++ E +++ +A + + + +NI D + ++ + N++ Sbjct: 521 ELELSCEDKNIMESIQEVYTVLAPFAWQHGLQMSVEPLQDNISAFF-DSKKIQCVLTNLI 579 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NAI FTPSGG+I IS + +EE+++ V DTG G+ + + F + ++ + Sbjct: 580 GNAIKFTPSGGKIGISVS-VCDEELLVSVTDTGEGIPENYITRIFNEFYHLKSTNSSAKK 638 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 G+GLGL + K +VDA+ G+ ++ ST G+ PL Sbjct: 639 GSGLGLAICKRIVDAHSGRMWVDSTLNHGSTFSFALPL 676 >gi|320182398|gb|EFW57295.1| hybrid sensory histidine kinase BarA [Shigella boydii ATCC 9905] Length = 918 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR----DHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|300931244|ref|ZP_07146584.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 187-1] gi|300460898|gb|EFK24391.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 187-1] Length = 918 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR----DHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|227114812|ref|ZP_03828468.1| hybrid sensory histidine kinase BarA [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 931 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 90/254 (35%), Positives = 137/254 (53%), Gaps = 12/254 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + +K PL N +Y Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKT----PL-NTTQTDYLL 332 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS N +L+I+ND+LD SK+E+GK+ L P SL + + + L+ A+EK + + Sbjct: 333 TIERSANNLLNIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTL 392 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDT 744 S N++P + + D ++QI N+L NAI FT G I + + +V L V RDT Sbjct: 393 SIQNDVPEQFVGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQESHQVQLEVQIRDT 452 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT-- 802 G+G+ + + + F Q S R GTGLGL + + +V G S KG+ Sbjct: 453 GIGIAELQQSQLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGSTF 512 Query: 803 LIEIIFPLYDTSHP 816 I PL + P Sbjct: 513 WFHITLPLNPHAMP 526 >gi|294627283|ref|ZP_06705869.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598365|gb|EFF42516.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 1191 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/246 (32%), Positives = 132/246 (53%), Gaps = 8/246 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S K+ FLA + HE+RTP+T ++G SE++ PL + R YA+ I Sbjct: 799 HKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQT---PL-DGRQQGYASAIQL 854 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 +G +L +VND LD+++IE+GK+ L + L + V + + LV+ A +K++ + Sbjct: 855 AGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQKQLAFHCELDD 914 Query: 693 NIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VRDTGVGMT 749 +P L D V+QI LN+L NA+ FT G + TT + LR VRDTG GM+ Sbjct: 915 ALPPALHGDASRVQQILLNLLFNAVKFTERGSVHLRVTTLPQHTRQGLRVEVRDTGPGMS 974 Query: 750 NYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + + F Q + + R G+GLGL + + + A G + S +G + Sbjct: 975 AEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGAVTVASELGQGACFVVEL 1034 Query: 809 PLYDTS 814 PL+ S Sbjct: 1035 PLHWVS 1040 >gi|332087561|gb|EGI92689.1| signal transduction histidine-protein kinase barA [Shigella boydii 5216-82] Length = 918 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR----DHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|323966764|gb|EGB62195.1| hsp90-like protein [Escherichia coli M863] gi|323978603|gb|EGB73685.1| hsp90-like protein [Escherichia coli TW10509] gi|327251524|gb|EGE63210.1| signal transduction histidine-protein kinase barA [Escherichia coli STEC_7v] Length = 918 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR----DHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|323180217|gb|EFZ65769.1| signal transduction histidine-protein kinase barA [Escherichia coli 1180] Length = 918 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTEL----TPTQRDHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|300920361|ref|ZP_07136798.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 115-1] gi|300412624|gb|EFJ95934.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 115-1] Length = 918 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTEL----TPTQRDHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|260221812|emb|CBA30748.1| hypothetical protein Csp_C25110 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 486 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 133/237 (56%), Gaps = 13/237 (5%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A AE + KS FLA +SHEIRTP+ +G +E++K+ PL N E A Y Sbjct: 96 ELQAALVQAESANVAKSRFLAMMSHEIRTPMNGALGLTELLKST---PLNN----EQAGY 148 Query: 630 IDR---SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 +D +GN +L ++ND+LD SKIE+ +M L P + + V + ++L + A K +++ Sbjct: 149 VDNILMAGNALLSLINDILDFSKIEAHQMELERIPFNPRQVVQDTLALFRTQAQAKGLVL 208 Query: 687 RTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 +++P D ++Q+ +N++ NA+ FT S G++ I+ T E + V+DTG Sbjct: 209 HLDMDDHVPDHATGDPNRLRQVWMNLVGNALKFT-SEGEVRIALLCTP-EGLRCSVKDTG 266 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +GM+ + + +PF Q +S + GTGLGL + KA++D + STP GT Sbjct: 267 IGMSAEVMSQLFEPFKQGDSSISRKFGGTGLGLVICKALIDQMGADLQVQSTPGVGT 323 >gi|160943338|ref|ZP_02090573.1| hypothetical protein FAEPRAM212_00824 [Faecalibacterium prausnitzii M21/2] gi|158445364|gb|EDP22367.1| hypothetical protein FAEPRAM212_00824 [Faecalibacterium prausnitzii M21/2] Length = 1084 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 85/257 (33%), Positives = 137/257 (53%), Gaps = 20/257 (7%) Query: 566 QEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN---- 620 QE N KL A + AE + KS FL+ +SH+IRTP+ AIIGF+ + L N Sbjct: 554 QELNAKLQVAVEKAESANRAKSTFLSNMSHDIRTPMNAIIGFTTL-------ALSNIDDT 606 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV--QLY 678 R +Y S N +L ++ND+LD+S+IESGK++L V+L + + + ++V Q+Y Sbjct: 607 DRVKDYLGKTLASSNHLLSLINDVLDMSRIESGKIHLEEVEVNLSDVLHDLKTIVSGQIY 666 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--- 735 A + + + + + D + QI LN+LSNAI FTP+GG + + + + Sbjct: 667 AKQLELYMDVMDVTD-EDVYCDKTRLNQILLNLLSNAIKFTPAGGTVSVRVRQLAGKVRG 725 Query: 736 --EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + R++D G+GM+ +K +PF + S R +GTGLG+ + K +VD G Sbjct: 726 CGQYEFRIKDNGIGMSQEFAQKIFEPFERERTSTVSRIQGTGLGMAITKNIVDMMGGTIE 785 Query: 794 IFSTPAKGTLIEIIFPL 810 + + KGT + P+ Sbjct: 786 VQTAQGKGTEFTVCVPM 802 >gi|42528002|ref|NP_973100.1| sensor histidine kinase/response regulator [Treponema denticola ATCC 35405] gi|41819047|gb|AAS13019.1| sensor histidine kinase/response regulator [Treponema denticola ATCC 35405] Length = 676 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 85/280 (30%), Positives = 146/280 (52%), Gaps = 17/280 (6%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + +T+ DI++ K ++ L A++ AEK +S +S FLA VSHEIRTP+ IIG E+I Sbjct: 113 FFVTIDDITKQKLKERFLIIARQDAEKANSMRSLFLANVSHEIRTPIQTIIGMMELINET 172 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + EY ++ S ++L +VND+LD SK+ESG M + +L ++V + + Sbjct: 173 NL----DEEQSEYTRQVNFSAEVLLTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVD 228 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTH 731 L+ + A++K + I ++ IP I D ++Q+ LN + NA+ FT +G + + Sbjct: 229 LISMEAHKKGLEIVVDISDKIPDFIYGDPARLQQVLLNFVKNAVKFTETGYVSVSVKLVF 288 Query: 732 TSNEE---------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 +N + ++ V DTG+G+ N + K F Q + + GTGLGL ++K Sbjct: 289 ENNSDDPYAAKHFFILFEVADTGIGVNNEQKSKIFNSFYQGNAAINRKYGGTGLGLAISK 348 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH--PHDCI 820 ++ G+ I +G++ PL + PH+ I Sbjct: 349 NIITMMKGQIGIKDNIPRGSVFWFKIPLVPSKKKAPHESI 388 >gi|189347008|ref|YP_001943537.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium limicola DSM 245] gi|189341155|gb|ACD90558.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium limicola DSM 245] Length = 926 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 85/260 (32%), Positives = 140/260 (53%), Gaps = 11/260 (4%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y DI+E K+ ++L AK+ AE+ K+ FL +SHEIRTP+ I+GFSE++K Sbjct: 528 YVAVKEDITERKRLWSELVAAKEKAEESDRLKTCFLENMSHEIRTPMNGILGFSELLKEP 587 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 L + EY I +SG +L I+NDL+DISKIE+G++ + + SLD+ + + Sbjct: 588 L---LDGSKKDEYIELIHQSGKRMLSIINDLIDISKIEAGEIAIQYTEASLDKIFHDLQA 644 Query: 674 LVQLYANEKRILIRTSFANNIP----RILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 + A K +L+ + +P I+ D + QI N++ NA+ +T S G+I Sbjct: 645 FFEPQATRKGLLLHCT--GCVPPSASVIVTDKSRLVQILTNLVQNALKYTAS-GEICFGC 701 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 T + + + VRDTG+G+ ++ EK F Q EG GLGL ++K++V+ Sbjct: 702 TK-NGDFLDFYVRDTGIGIPDFLTEKIFDRFRQAQVDPVREYEGVGLGLSISKSLVELLG 760 Query: 790 GKFYIFSTPAKGTLIEIIFP 809 G+ + S+ +G++ P Sbjct: 761 GRIGVQSSAGEGSVFSFSLP 780 >gi|330828385|ref|YP_004391337.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas veronii B565] gi|328803521|gb|AEB48720.1| Two-component system hybrid sensor histidine kinase/response regulator [Aeromonas veronii B565] Length = 905 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 132/238 (55%), Gaps = 8/238 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P +Y Sbjct: 276 ELDMAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQLLKTSL----TPSQTDYMQT 331 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S +L I+ND+LD SK+E+GK+ L P SL + ++E + L+ A++K++ + Sbjct: 332 IEKSARNLLGIINDILDFSKLEAGKLQLEHIPFSLRDTLNETMHLLGPSAHDKQLELSLR 391 Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTG 745 ++P L D ++Q+ N+ NAI FT G + I T + N +V L ++RDTG Sbjct: 392 VDADVPDYLTGDPMRLQQVLTNLTGNAIKFTEQGNVDVHIEQTGSGNHKVRLNVQIRDTG 451 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G++ + + + F Q +S R GTGLGL + + +V G+ S KG++ Sbjct: 452 IGISQEQQHQLFQAFNQADSSISRRYGGTGLGLVITQKLVQQMGGQIRFESELGKGSI 509 >gi|301061357|ref|ZP_07202137.1| PAS domain S-box protein [delta proteobacterium NaphS2] gi|300444534|gb|EFK08519.1| PAS domain S-box protein [delta proteobacterium NaphS2] Length = 492 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 113/384 (29%), Positives = 193/384 (50%), Gaps = 53/384 (13%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 + +E +L +I+ ++G+ + NR ++ N A+ +L +I KP + P Sbjct: 143 LNLEKSRLKTIINCMANGVMVTNRNLEVVLNNPALMRLM-----EITEKPVS-------P 190 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM-------- 558 ++ +T+ DL TL+K+ G T + + +S IK+ + + M Sbjct: 191 VPISEIITD---EDLVATLKKLLNGETPQTESISQEFRIKQNTLRALSAPAMDPDGAIAG 247 Query: 559 -----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 DI+ +KQ KSDF+ V+HE+R+PL AI + V+ Sbjct: 248 TVTVLEDITAFKQL--------------DEMKSDFVNMVAHELRSPLVAIRQLNSVLLEG 293 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLD----IVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 GPL + ++I R G +D ++NDLLDI+K+E+GK H P + + + Sbjct: 294 LAGPLQEKQQ----DFIKR-GVAKIDSLLNLINDLLDIAKLEAGKFIQHRVPTDIGKIIK 348 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 E + L++ A ++ IL+ N P + AD + +++I N++SNAI+++P GG++ +S Sbjct: 349 EILELMEPRAQKQHILLSHHLENLKP-VQADPKRIEEIFNNLISNAINYSPQGGRVTVSA 407 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + +RV DTGVG+T EL K F ++ N + + GTGLGL + K +VDA+ Sbjct: 408 -KGQGAYMEIRVEDTGVGITEEELPKIFDKFYRVKNPKTRQVVGTGLGLAIVKGVVDAHQ 466 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDT 813 G + S P KGT +I+ P+ DT Sbjct: 467 GSIQVESIPDKGTTFKILLPVIDT 490 >gi|293395210|ref|ZP_06639496.1| sensor histidine kinase RcsC [Serratia odorifera DSM 4582] gi|291422387|gb|EFE95630.1| sensor histidine kinase RcsC [Serratia odorifera DSM 4582] Length = 930 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 87/261 (33%), Positives = 136/261 (52%), Gaps = 7/261 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 421 VLVDVSARVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKAL- 479 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N ++ S L+L I++D+LD SKIES ++ + S E ++ Sbjct: 480 PEGVDRLV---NAMNNSSGLLLKIISDILDFSKIESEQLKIEPREFSCLEVITHIAGNYL 536 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +KR+ + N+P RI D ++Q+ N+L+NAI FT +G I+ T S Sbjct: 537 PLVVKKRLGLYCFIEQNVPERISGDPVRLQQVLSNLLNNAIKFTDTGCIILQVTARGSYL 596 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 E VRDTGVG+ E+ + PF Q+ Q +GTGLGL + + +++ G + Sbjct: 597 E--FSVRDTGVGIPEKEISRLFDPFFQVGTGVQRHFQGTGLGLAICEKLINMMDGDIAVE 654 Query: 796 STPAKGTLIEIIFPLYDTSHP 816 S P G++ I PL+D +P Sbjct: 655 SEPGLGSMFSIRIPLFDAQYP 675 >gi|289667389|ref|ZP_06488464.1| histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 1132 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 132/243 (54%), Gaps = 10/243 (4%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S K+ FLA + HE+RTP+T ++G SE++ PL + R YA+ I Sbjct: 799 HKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQT---PL-DGRQQGYASAIQL 854 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 +G +L +VND LD+++IE+GK+ L + L + V + + LV+ A +K++ + + Sbjct: 855 AGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQKQLAFHCALDD 914 Query: 693 NIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGM 748 +P L D V+QI LN+L NAI FT G ++ HT + + + VRDTG GM Sbjct: 915 ALPPALHGDASRVQQILLNLLFNAIKFTERGSVHLRVAALPEHT-QQGIRVEVRDTGPGM 973 Query: 749 TNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + + + F Q + + R G+GLGL + + + A G + S +G + Sbjct: 974 SAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGSVTVISELGQGACFVVE 1033 Query: 808 FPL 810 PL Sbjct: 1034 LPL 1036 >gi|259156567|gb|ACV96510.1| multi-sensor hybrid histidine kinase [Vibrio fluvialis Ind1] Length = 1252 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 106/394 (26%), Positives = 193/394 (48%), Gaps = 36/394 (9%) Query: 437 DVDTRINKRKMEIEVMQLC--SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL- 493 +++ ++ R EI + + SIL + I + EGII + N A KL GY E++L Sbjct: 353 ELEQQVALRTAEISRVNILQRSILSSAGYAIIATDEEGIITAFNPAAEKLLGYRAEEVLF 412 Query: 494 RKPFTVFLEQNTPSVMNHYLTEI-------LSLDLRQTLEKITLGSTKEEKLLSL----R 542 ++ ++F + P+ + H+ ++ +++ + K LG T + L Sbjct: 413 QQTPSIF---HLPAEVEHHAAKLTTELGSNIAVGFETLVAKARLGQTDNARWTYLTKTGE 469 Query: 543 IIIKKLPFSSC---------YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 + KL S+ + D+++ + + +L+ AK+ AE + KS+FLA +S Sbjct: 470 QVQVKLNVSALKDEQGQLAGFLGIAFDLTKQLKYEAELAQAKEQAESANKAKSEFLANMS 529 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HEIRTP+ ++G +++ N + R +Y + +L ++ND+LD SKIE+G Sbjct: 530 HEIRTPMNGVLGLLQLVANSTL----DQRQADYIEKAYSAAKSLLTLLNDILDFSKIEAG 585 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNIL 712 K+ L P SL + + + + A +K + + ++P +L D +KQ+ +N++ Sbjct: 586 KLELDPHPFSLTDLLQDIGLVFSSSAEQKGLEVLYDVTADVPEHLLGDSFRIKQVLINLV 645 Query: 713 SNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 NAI FT G+I+IS S E + ++DTG+G+T + F Q +S Sbjct: 646 GNAIKFTDK-GEILISIRSQSLPEGEINLSFSIKDTGIGITLEQQNALFSGFQQADSSIS 704 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 R GTGLGL ++K +V+ G+ + S G+ Sbjct: 705 RRYGGTGLGLAISKRLVNLMGGEIGVESEFGCGS 738 >gi|16127332|ref|NP_421896.1| sensor histidine kinase/response regulator [Caulobacter crescentus CB15] gi|13424758|gb|AAK25064.1| sensor histidine kinase/response regulator [Caulobacter crescentus CB15] Length = 560 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 12/225 (5%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S KS FLA +SHE+RTP+ ++G + ++ + + + EY I++SG+ ++ I+ Sbjct: 183 SRAKSAFLAMMSHELRTPMNGVLGLAHALRGTKL----DAQQSEYLEMIEQSGHGLMTIL 238 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI----LIRTSFANNIPRI 697 ND+LD+SKIE+GK+NL P L + A+ +++ R+ LI + P + Sbjct: 239 NDILDLSKIEAGKLNLEVAPFDLRKL---ALQTRAVWSESARLKGLDLILEVSPSAPPWV 295 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D V+QI +N++SNA+ FT SG +++I + V L V DTGVGMT ++ + Sbjct: 296 SGDATRVRQILMNLVSNALKFTESG-RVVIRLGGEAGGVVTLSVTDTGVGMTAEQIGRLF 354 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 PF Q S R GTGLGL + + + + G+ + S P G+ Sbjct: 355 TPFAQGDASIARRFGGTGLGLSICRQLAELMAGEIIVSSEPGVGS 399 >gi|331648511|ref|ZP_08349599.1| signal transduction histidine-protein kinase BarA [Escherichia coli M605] gi|281179787|dbj|BAI56117.1| two-component sensor kinase [Escherichia coli SE15] gi|330908812|gb|EGH37326.1| BarA sensory histidine kinase ( VarS GacS) [Escherichia coli AA86] gi|331042258|gb|EGI14400.1| signal transduction histidine-protein kinase BarA [Escherichia coli M605] Length = 918 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR----DHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 +++P ++ D ++QI N++ NAI FT +G I++ SN +V + V RDTG Sbjct: 394 IKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSLPNRGS 510 >gi|256829959|ref|YP_003158687.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256579135|gb|ACU90271.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 705 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 86/256 (33%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ KQ + +L AK AE + KS FLA +SHEIRTPL ++G ++++ Sbjct: 308 DITPRKQMEVELVAAKNAAESANKAKSAFLANMSHEIRTPLNGLLGMMQLLETTDTSD-E 366 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 YIE A RSG + +++D+LD+S+IE+G+M L EP +L E S + Sbjct: 367 QQMYIEMAI---RSGGRLTRLLSDILDLSRIEAGRMPLSEEPFNLSETFSAVTDSFGPVS 423 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIIST---THTSN 734 +KR+ +R A ++P+ + D V+Q+ N++ NA+ FT G +I +ST Sbjct: 424 IQKRLPVRIDVAPDVPKEVFGDEVRVRQVLFNLVGNAMKFTDQGEVRIEVSTLLPLPPDT 483 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V+ V DTG GM++ L+ PF Q +G GLGL + K +V A G Sbjct: 484 VRVLFCVTDTGAGMSDTTLKTLGNPFTQASEGFTREHQGAGLGLSICKRLVAAMGGTLTF 543 Query: 795 FSTPAKGTLIEIIFPL 810 ST GT ++ P Sbjct: 544 ESTLGAGTAAYLMLPF 559 >gi|226945550|ref|YP_002800623.1| integral membrane hybrid histidine protein kinase [Azotobacter vinelandii DJ] gi|226720477|gb|ACO79648.1| integral membrane hybrid histidine protein kinase [Azotobacter vinelandii DJ] Length = 914 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 82/254 (32%), Positives = 141/254 (55%), Gaps = 13/254 (5%) Query: 565 KQEKNKLSHAKKIAEK---ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +Q + + ++ + AE+ ++ KS FLA++SHEIRTPL ++G +++K R + Sbjct: 383 QQLRREGLYSHRAAEEALLQNQAKSRFLAKMSHEIRTPLNGVLGMLQLLKETRLD--HSQ 440 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 R+ Y + I SG+ ++ ++ND+LD ++IESGK++L L+E +S+ ++L A E Sbjct: 441 RF--YVDTIASSGSTLMAVINDILDYARIESGKLSLEHIEFDLEEMLSDTLNLFTAQAME 498 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEE 736 KR+ + S +PR I D +KQ+ N+LSNA+ FT S GQ+ + + +E Sbjct: 499 KRLRLHMSLDEGVPRHIQGDPTRLKQVLTNLLSNALKFT-SEGQVRLDVSRRRKSDGSEH 557 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + V D+G+G+ + + F Q +S R G+GLGL ++K +V+ G + S Sbjct: 558 LYFGVSDSGIGIRQEAQARLFESFSQGDSSTTRRYGGSGLGLAISKELVEMMGGHIEVQS 617 Query: 797 TPAKGTLIEIIFPL 810 TP G+ PL Sbjct: 618 TPGLGSRFTFNLPL 631 >gi|294667422|ref|ZP_06732639.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292602755|gb|EFF46189.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 1191 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/246 (32%), Positives = 132/246 (53%), Gaps = 8/246 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S K+ FLA + HE+RTP+T ++G SE++ PL + R YA+ I Sbjct: 799 HKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQT---PL-DGRQQGYASAIQL 854 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 +G +L +VND LD+++IE+GK+ L + L + V + + LV+ A +K++ + Sbjct: 855 AGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQKQLAFHCELDD 914 Query: 693 NIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VRDTGVGMT 749 +P L D V+QI LN+L NA+ FT G + TT + LR VRDTG GM+ Sbjct: 915 ALPPALHGDASRVQQILLNLLFNAVKFTERGSVHLRVTTLPQHTRQGLRVEVRDTGPGMS 974 Query: 750 NYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + + F Q + + R G+GLGL + + + A G + S +G + Sbjct: 975 AEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGAVTVASELGQGACFVVEL 1034 Query: 809 PLYDTS 814 PL+ S Sbjct: 1035 PLHWVS 1040 >gi|189467535|ref|ZP_03016320.1| hypothetical protein BACINT_03925 [Bacteroides intestinalis DSM 17393] gi|189435799|gb|EDV04784.1| hypothetical protein BACINT_03925 [Bacteroides intestinalis DSM 17393] Length = 652 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 88/258 (34%), Positives = 130/258 (50%), Gaps = 23/258 (8%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 +HDI + Q N+L AK+ AE+ KS FLA +SHEIRTPL AI+GFSE+I Sbjct: 271 IHDIGDRVQRSNELIEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFSEIIALTE--- 327 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 EY N I ++ NL+L ++ND+LD+S+IESGK ++F+ V E L+ Sbjct: 328 -DEVEKAEYLNIIQKNSNLLLQLINDILDLSRIESGKSEMNFQLV-------EMTGLIDE 379 Query: 678 YANEKRILIRTSFANNI------PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 R+ ++T N+ I+ D + Q+ N LSNAI T G I Sbjct: 380 VEKVHRLKMKTGIRLNVICPDEEIWIMVDRNRITQVLFNFLSNAIKNTHEG--TITLGLE 437 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 E + + V DTG G+ +L F ++ + Q GTGLGLP+ +++V+ GK Sbjct: 438 VCGEWLKVYVTDTGCGIAKEKLPLIFNRFEKLNDFVQ----GTGLGLPICQSIVERLGGK 493 Query: 792 FYIFSTPAKGTLIEIIFP 809 + S G+ + P Sbjct: 494 ISVESEVGVGSTFVMTLP 511 >gi|113866854|ref|YP_725343.1| signal transduction histidine kinase [Ralstonia eutropha H16] gi|113525630|emb|CAJ91975.1| signal transduction histidine kinase containing a receiver domain (hybrid) and a PAS sensor domain [Ralstonia eutropha H16] Length = 569 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 138/236 (58%), Gaps = 4/236 (1%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A+ AE + KS+FL+ +SHE+R PL AI+GF++++ ++ P + + + I Sbjct: 178 LKQAQASAESANHAKSEFLSSMSHELRNPLNAILGFAQLMASEAPPPTASQQ--ASIDQI 235 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 ++G +L+++N++LD+++IE+G+ +L EPVS+ + + E ++++ A ++ + +R Sbjct: 236 LKAGWHLLELINEVLDLARIEAGQASLSPEPVSVIDTLHECQAMLEQQALKRSVRMRFPA 295 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + AD +KQI LN+LSNAI + G + + T T+ V + VRDTGVG+T Sbjct: 296 VEPPCFVRADRTRLKQILLNLLSNAIKYNRDQGSVDVQVT-TTGHRVGVSVRDTGVGLTP 354 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 L + +PF ++ + EGTG+GL +AK + + G STP G++ + Sbjct: 355 ERLAQLFQPFNRL-GHEAGPVEGTGIGLVVAKRLAELMGGTISAKSTPGVGSVFRV 409 >gi|134291091|ref|YP_001114860.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis G4] gi|134134280|gb|ABO58605.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis G4] Length = 989 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/309 (27%), Positives = 160/309 (51%), Gaps = 8/309 (2%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 E + G+A + +G L N+ ++ G+P + + ++ + + + Sbjct: 410 FENAAVGVAHCDLDGRFLRVNQRSGEIVGWPRDALQQRRLHELIHADFSVASTERFRLLT 469 Query: 518 SLDLRQTLEKITLGSTKEEKL---LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574 L+ E++ L E++ LS+ + ++ + + DISE K + + A Sbjct: 470 EGRLKHYSEEVPLVRFDGERVWVTLSVALQHDASGQTAHVIVIIQDISERKALEETVRVA 529 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K AE S K FLA +SHE+RTPL I+G+++++ QR L + R + I++SG Sbjct: 530 KDAAEAASRAKDQFLANISHELRTPLNGILGYAQIL--QRDARL-DTRQLASVGVIEQSG 586 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L ++ND+LD +++ +GK+ L VSL + +V + A +KR+++ A ++ Sbjct: 587 QHLLTLINDILDFARLGAGKLELQVGEVSLRGFLETIAEIVAVRAQQKRLVLNYVAAPDL 646 Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 P ++ D R ++Q+ LN+L+NA+ FT G++ +S + + + VRDTG+G++ L Sbjct: 647 PAVVRVDERRLRQVLLNLLANAVQFTDH-GEVTLSVSRGAAGRLRFEVRDTGIGVSADRL 705 Query: 754 EKAMKPFGQ 762 E +PF Q Sbjct: 706 EAIFQPFEQ 714 >gi|298290314|ref|YP_003692253.1| integral membrane sensor signal transduction histidine kinase [Starkeya novella DSM 506] gi|296926825|gb|ADH87634.1| integral membrane sensor signal transduction histidine kinase [Starkeya novella DSM 506] Length = 839 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 119/226 (52%), Gaps = 4/226 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS F++ VS+E+R+PLT IIGF++++ + GPL N + Y N+I S +L I+ND+ Sbjct: 608 KSTFVSHVSYELRSPLTTIIGFAQLLDDTGIGPL-NVKQRAYVNHITESSAALLAIINDI 666 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD++ I++G M L V + A+ A V+ E I + N AD + V Sbjct: 667 LDLATIDAGSMALELTEVDVRAAMDAAAEGVRDRLAEGGIRLSIELQNAAGSFRADAKRV 726 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +QI N+LSNA+ F P G + +S + VI RVRD G G+ +A F Sbjct: 727 RQILYNLLSNAVGFAPEGSTVTLSAER-REDGVIFRVRDMGPGVPPEIGARAFDRFES-- 783 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 ++ R G GLGL + +++V + G + GTL+ IFPL Sbjct: 784 HTAGSRHRGVGLGLSIVRSLVALHGGTVSLAPAQGGGTLVTCIFPL 829 >gi|159901028|ref|YP_001547275.1| integral membrane sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159894067|gb|ABX07147.1| integral membrane sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 386 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/261 (32%), Positives = 144/261 (55%), Gaps = 7/261 (2%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L ++IS+ KQ + L AK+ AE + KS FLA +SHE+RTPL AIIG+SE+++ Sbjct: 126 LLANEISQRKQIEQSLLAAKEEAELANRSKSQFLAMMSHELRTPLNAIIGYSELLQEDAE 185 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P Y++ + I +G +L ++ND+LD+SKIE+G+M L + E +++ + Sbjct: 186 AD-QLPNYVQDLSTIRNAGVHLLGLINDVLDLSKIEAGRMELFGQDFRAIELINDLELYI 244 Query: 676 --QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 Q+ N R+++ A ++ + +DL+ ++QI LN+L+NA FT G I Sbjct: 245 QPQIAKNNNRLVL--DVAKDLGVMHSDLQKLRQILLNLLTNASKFTQQG--TITLRAKRD 300 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + + V DTG+GM++ + +PF Q S R GTGLGL +++++ G Sbjct: 301 GDWLHFEVVDTGIGMSSEHVANLFQPFVQAEQSTAARFGGTGLGLAISRSLARLLGGDIM 360 Query: 794 IFSTPAKGTLIEIIFPLYDTS 814 + S +G+ ++I P + + Sbjct: 361 VESVLGQGSNFQLIVPAFQLA 381 >gi|225419699|ref|ZP_03762002.1| hypothetical protein CLOSTASPAR_06037 [Clostridium asparagiforme DSM 15981] gi|225041663|gb|EEG51909.1| hypothetical protein CLOSTASPAR_06037 [Clostridium asparagiforme DSM 15981] Length = 926 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/239 (33%), Positives = 135/239 (56%), Gaps = 8/239 (3%) Query: 568 KNKLSHAK-KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 +N L ++ + AE +S+ KS FL+++SHEIRTP+ AIIG +++ +R P P + Sbjct: 539 RNALLQSRLEAAEAKSTAKSVFLSQMSHEIRTPMNAIIGLTDLTCKERDVP---PEIEKK 595 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I S +L ++ND+LD+S+IE+GKM + + SL + E S++ A +K + Sbjct: 596 LKKIRSSSQYLLALINDILDMSRIENGKMEIEQKDFSLSLVLQELQSMMSTQAEQKGLEF 655 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVILR--VRD 743 + F + + D ++Q+ +N+LSNA+ FTP+GG++ + S EE+ R V+D Sbjct: 656 QVDFYVSHDWLAGDPVRLRQVLINLLSNAVKFTPAGGKVTLRVNEQSCGEEMEYRFSVQD 715 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TGVG+ + E+ F Q+ S GTGLGLP+++ + G + S P KG+ Sbjct: 716 TGVGIPYEDQERIFSSFEQLRPSIS-HSAGTGLGLPISRNIARLMGGDLEVKSEPGKGS 773 >gi|218438944|ref|YP_002377273.1| integral membrane sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218171672|gb|ACK70405.1| integral membrane sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 633 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 110/379 (29%), Positives = 183/379 (48%), Gaps = 42/379 (11%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++L+A D I + N+EGI+L ++ P L PF + + V H E Sbjct: 262 ALLDAIPDLILVFNQEGILLDCKCQTNE--NTP----LSLPFKSIIGKKIDEVFAHDSAE 315 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLS-------LRIIIKKLPFSSCYSLTMHDISEWKQEK 568 +L +++ L TL + E+ + RI++ + DI+ K Sbjct: 316 LLFFHIKEALTCKTLQVCEYEQFIGDEKLYYETRIVVSG---EGEVLAIIRDIT-----K 367 Query: 569 NKLSHAK-----KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI--KNQRFGPLGNP 621 NKL+ A+ + AE + K+ FLA +SHE+RTPL I+G S+++ Q G L Sbjct: 368 NKLAQAEWQQAKEAAEAANQAKTAFLASMSHELRTPLNGILGLSQLLLEDAQEAGYLD-- 425 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 +IE I++SG +L ++ D+LDISKIE+GKM L+ E + ++E ++ +Q + Sbjct: 426 -FIEDLQQINQSGLHLLGLIEDILDISKIEAGKMILYPETFDVSLLITEVVNTIQPLIKK 484 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----- 736 ++ F+N + ++AD + VKQI +N+LSNA FT G ++ NE Sbjct: 485 NGNSLQIKFSNPLGPMVADRKRVKQILINLLSNAAKFTEQGKILLTVNRQVFNETPQPSI 544 Query: 737 ------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 ++ V DTG+GMT ++ K +PF Q +S + GTGLGL + + + G Sbjct: 545 NSPSTWLVFSVIDTGIGMTQEQISKIFQPFVQADSSTTKKYGGTGLGLSICQRFCEMMGG 604 Query: 791 KFYIFSTPAKGTLIEIIFP 809 + S G+ + P Sbjct: 605 YITVESQVNVGSAFTVGLP 623 >gi|171317408|ref|ZP_02906601.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] gi|171097425|gb|EDT42266.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] Length = 1242 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 132/228 (57%), Gaps = 6/228 (2%) Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 S KSDFLAR+SHEIRTP+ ++G +E+++ R + ++ + + RSG +L I++ Sbjct: 561 SAKSDFLARMSHEIRTPMNGVLGMTELLQRTRL----TSKQRKFVDTVYRSGQTLLVIID 616 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADL 701 D+LD SKIE+GK+ L +L + + + ++L++ A K + + A+++P R+ D Sbjct: 617 DILDFSKIEAGKLTLERIDFNLHQLLDDVVALLEPNARRKALELVYRRADSVPQRMRGDP 676 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 ++QI N+L NAI FT G + +S +++ + ++ + D+G+G+ + +PF Sbjct: 677 VRLRQILTNLLGNAIKFTEH-GHVGLSASYSDDGRIVFTIADSGIGIPPDISAQLFRPFQ 735 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q +S + GTGLGL +++ + + G + S P KG++ + P Sbjct: 736 QADSSTARKYGGTGLGLVISRQLAEMMGGTLTLDSAPGKGSVFTVTTP 783 >gi|262381430|ref|ZP_06074568.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262296607|gb|EEY84537.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 423 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 143/260 (55%), Gaps = 18/260 (6%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + ++DI+E +Q++ L ++ A+K K+ F+A +SHEIRTPL AI+GF+ ++ Sbjct: 161 IMLNDITEQRQDQLALMKVQE-ADK---MKNAFIANMSHEIRTPLNAIVGFAHLVTETT- 215 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 EY + I+++ +L+L ++ND+LD+SKIESG++N + V L + EA + Sbjct: 216 ---NASEQREYFSIINKNCDLLLKLINDILDLSKIESGRLNYNVSEVELRDICQEAYVVQ 272 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 L L+ S A R+ D V+Q+ LN+LSNAI FT G IS + E Sbjct: 273 SLKMTSDVALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSKG---FISLFYEV-E 328 Query: 736 EVILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ +RV DTG+G++ +LE + F ++ + Q G GLGLP+ K +V+ G+ Sbjct: 329 DMFVRVSVMDTGIGISEEKLESVFERFVKLDDFYQ----GAGLGLPICKMIVEQLGGEIG 384 Query: 794 IFSTPAKGTLIEIIFPLYDT 813 + S KG+ PL T Sbjct: 385 VRSELGKGSTFWFTLPLVVT 404 >gi|260760720|ref|ZP_05873063.1| histidine kinase [Brucella abortus bv. 2 str. 86/8/59] gi|260671152|gb|EEX57973.1| histidine kinase [Brucella abortus bv. 2 str. 86/8/59] Length = 574 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 86/254 (33%), Positives = 140/254 (55%), Gaps = 4/254 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT D+++ + + L + E K+DF+ VS+E+R+PLT IIGF+E+++ F Sbjct: 314 LTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAF 373 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L N R +EY +YI S +++L IVND+LD++ +++G M L VS+ EA+S A S V Sbjct: 374 GSL-NERQLEYLDYISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRV 432 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + I + A+++ AD V+Q+ N+LSNA+++ P G I++ Sbjct: 433 SERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVAR-DGA 491 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +V+ V D G GM + L+ K F PN + G GLGL + K+ V+ + G+ I Sbjct: 492 DVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRR--RGAGLGLAIVKSFVELHGGRVEID 549 Query: 796 STPAKGTLIEIIFP 809 + +GT + FP Sbjct: 550 TGEERGTTVICRFP 563 >gi|218547698|ref|YP_002381489.1| hybrid sensory histidine kinase BarA [Escherichia fergusonii ATCC 35469] gi|218355239|emb|CAQ87846.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Escherichia fergusonii ATCC 35469] gi|324111190|gb|EGC05173.1| hsp90-like protein [Escherichia fergusonii B253] gi|325496174|gb|EGC94033.1| hybrid sensory histidine kinase BarA [Escherichia fergusonii ECD227] Length = 918 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 131/237 (55%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTEL----TPTQRDHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLTIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 ++P ++ D ++QI N++ NAI FT G I++ SN +V + V RDTG Sbjct: 394 IKGDVPDNVIGDPLRLQQIITNLVGNAIKFTERGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|209966158|ref|YP_002299073.1| histidine protein kinase DivJ [Rhodospirillum centenum SW] gi|209959624|gb|ACJ00261.1| histidine protein kinase DivJ [Rhodospirillum centenum SW] Length = 529 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 100/324 (30%), Positives = 169/324 (52%), Gaps = 16/324 (4%) Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK---EEKLLSLR----IIIK 546 R P V + V+ HY + ++ + E I L + E L+ +R I++ Sbjct: 190 RTPEEVLPPEVADEVLGHYRACVAGGEVMRYEESIPLPTGTRLWETVLVPIRDGSGRIVR 249 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 L S+ DI+ + + L A + AE+ S KS+FL+ SHE+RTPL AI+GF Sbjct: 250 LLGGST-------DITARRLHEEGLRAAAREAEEASRAKSEFLSGTSHELRTPLNAILGF 302 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 +E + +GPL +P+ E I +G +LD+VNDLLD++++E+ ++ L E V Sbjct: 303 TEALTAGIYGPL-SPKQAEAVTVIRDAGAHLLDLVNDLLDLARVEARRLPLDPEAVDAAL 361 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 E ++ L A + + + + A +P + AD ++QI N+ +NA+ FT GGQ+ Sbjct: 362 VAREVTEMLALQAAQNGVALSCTAAAGLPPVWADPLRLRQIVTNLAANAVKFTLRGGQVR 421 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMV 785 + ++LRVRDTG+G+ ++++ M+PF + + R EG GLGL L +A+V Sbjct: 422 LELEPAPGGGLLLRVRDTGIGIRAEDMDRLMQPFQTLRDPAGPRPNEGLGLGLALTRALV 481 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + + G + S GT + + P Sbjct: 482 EQHGGTMRLESRHRAGTTVTVTLP 505 >gi|294055429|ref|YP_003549087.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293614762|gb|ADE54917.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 885 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 88/267 (32%), Positives = 144/267 (53%), Gaps = 18/267 (6%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DIS+ K+ +++L A K A+ + K +FLA +SHEIRTP+ +IG SE+ + Sbjct: 213 RDISDLKRTESELMTAMKEAQAANRAKGEFLAAMSHEIRTPINGVIGASELCQETEL--- 269 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN---LHFEPVS-LDEAVSEAISL 674 + Y + + + GN +L +VND+LD SKIE+G++N L+F P + L+E + E Sbjct: 270 -DAEQRAYLDTVIQCGNTLLSLVNDVLDFSKIEAGQLNLEQLNFNPEAVLEEVIEEFAGT 328 Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST--TH 731 V+ +K I + S + +P+ ++ D +KQI N+L NA+ FT + G+I++S Sbjct: 329 VK----KKGIELILSCDDRMPKYVIGDPTRLKQIFYNLLGNAVKFTEA-GEIVLSAHIVE 383 Query: 732 TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 S + ++R VRDTG+G++ E F Q S R GTGLGL + K + + Sbjct: 384 RSAQLAVIRFKVRDTGIGISETRREAIFSSFTQEDMSTTRRYGGTGLGLAICKELTELMA 443 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHP 816 G + S +G+ + P +S P Sbjct: 444 GSLSVDSRVGEGSTFTLEVPFELSSTP 470 >gi|217969774|ref|YP_002355008.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] gi|217507101|gb|ACK54112.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] Length = 1029 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/249 (29%), Positives = 127/249 (51%), Gaps = 10/249 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L HA A S KS+FL +SHEIRTP+ +IG +V+ + + + +E Sbjct: 489 ELQHALDAANIASRAKSEFLTTMSHEIRTPMNGVIGLLDVLSHSQL----STEQVEMVGI 544 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + S +L +++D+LD S+IESG + L P S+ + ++ + ++Q AN K + + T Sbjct: 545 MRESAETLLRLIDDILDFSRIESGNLELDVGPASIPDLIARVVGILQTVANRKSVRLSTR 604 Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG----GQIIISTTHTSNEEVILRVRDT 744 ++P ++ D ++QI N++ NA+ F+ SG G++ I + V D Sbjct: 605 IDPDVPAVVRTDALRLQQILGNLVGNAVKFS-SGLDRPGRVEIRVETAGAGRIRFMVTDN 663 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ +EK PF Q +S R G+GLGL + +V G+ + S P +G+ Sbjct: 664 GIGIAPEAIEKIFDPFSQAESSTTRRFGGSGLGLSICTRLVRMMKGRMEVNSLPGRGSRF 723 Query: 805 EIIFPLYDT 813 + PL T Sbjct: 724 VVTLPLAAT 732 >gi|254850977|ref|ZP_05240327.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|21885294|gb|AAL59700.1| putative histidine kinase [Vibrio cholerae] gi|254846682|gb|EET25096.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|259156330|gb|ACV96276.1| multi-sensor hybrid histidine kinase [Vibrio cholerae Ind4] Length = 1268 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 106/394 (26%), Positives = 193/394 (48%), Gaps = 36/394 (9%) Query: 437 DVDTRINKRKMEIEVMQLC--SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL- 493 +++ ++ R EI + + SIL + I + EGII + N A KL GY E++L Sbjct: 369 ELEQQVALRTAEISRVNILQRSILSSAGYAIIATDEEGIITAFNPAAEKLLGYRAEEVLF 428 Query: 494 RKPFTVFLEQNTPSVMNHYLTEI-------LSLDLRQTLEKITLGSTKEEKLLSL----R 542 ++ ++F + P+ + H+ ++ +++ + K LG T + L Sbjct: 429 QQTPSIF---HLPAEVEHHAAKLTTELGSNIAVGFETLVAKARLGQTDNARWTYLTKTGE 485 Query: 543 IIIKKLPFSSC---------YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 + KL S+ + D+++ + + +L+ AK+ AE + KS+FLA +S Sbjct: 486 QVQVKLNVSALKDEQGQLAGFLSIAFDLTKQLKYEAELAQAKEQAESANKAKSEFLANMS 545 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HEIRTP+ ++G +++ N + R +Y + +L ++ND+LD SKIE+G Sbjct: 546 HEIRTPMNGVLGLLQLVANSTL----DQRQADYIEKAYSAAKSLLTLLNDILDFSKIEAG 601 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNIL 712 K+ L P SL + + + + A +K + + ++P +L D +KQ+ +N++ Sbjct: 602 KLELDPHPFSLTDLMQDIGLVFSSSAEQKGLEVLYDVTADVPEHLLGDSFRIKQVLINLV 661 Query: 713 SNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 NAI FT G+I+IS S E + ++DTG+G+T + F Q +S Sbjct: 662 GNAIKFTDK-GEILISIRSQSLPEGEINLSFSIKDTGIGITLEQQNALFSGFQQADSSIS 720 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 R GTGLGL ++K +V+ G+ + S G+ Sbjct: 721 RRYGGTGLGLAISKRLVNLMGGEIGVESEFGCGS 754 >gi|291537720|emb|CBL10832.1| Signal transduction histidine kinase [Roseburia intestinalis M50/1] Length = 855 Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/259 (32%), Positives = 136/259 (52%), Gaps = 14/259 (5%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + KL + + AE+ + K+DFL R+SH+IRTP+ I G ++ + +GNP+ E Sbjct: 451 QKKLEKSVEQAEQANIAKTDFLRRMSHDIRTPINGIRGMVDICRYY----IGNPKKQEEC 506 Query: 628 -NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + I S ++++VND+LD++K+ESG++ L +P S+ E + E ++V + A E+ I + Sbjct: 507 LDKILLSSTFLMELVNDVLDMNKLESGQIKLEEKPFSISEILKEVETVVGMAATEQGITL 566 Query: 687 RTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--SNEEVILR--V 741 N +L V+QI NI SNA+ + G++I+ NE+ + Sbjct: 567 TVKKGEINHENLLGSSLHVRQILQNITSNAVKYNKPNGKVILECRELPPKNEKAVFEFVC 626 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D G+GM+ E A +PF Q +S + GTGLGL + K +V+ G + S P KG Sbjct: 627 TDNGIGMSPKFQEHAFEPFVQENSSARTSYTGTGLGLAIVKKLVEQMEGTIHFVSEPGKG 686 Query: 802 TLIEIIFPLYDTSHPHDCI 820 T ++ P P D I Sbjct: 687 TRFTLVIPFL----PDDSI 701 >gi|158333448|ref|YP_001514620.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] gi|158303689|gb|ABW25306.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] Length = 755 Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 127/225 (56%), Gaps = 12/225 (5%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K DFLA +SHEIRTP+ +IG + ++ + P+ EY I +SG+ +L ++ND+ Sbjct: 236 KDDFLAMMSHEIRTPMNGVIGMTGLLLDTEL----TPQQQEYTETIRKSGDSLLTLINDI 291 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703 LD SKIE+GK++L + ++ V +A+ LV K I + ++P+ IL D+ Sbjct: 292 LDYSKIEAGKLDLEKQAFNVRVCVEDALELVASRVGPKEIELAGVVEPDVPQAILGDVTR 351 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTT------HTSNEEVILRVRDTGVGMTNYELEKAM 757 ++QI +N+L NAI FT S G+++++ + T E+ VRDTG+G+ + Sbjct: 352 LRQILVNLLGNAIKFTQS-GEVVVNVSAEPFAADTPLYELSFAVRDTGMGIPAERQNRLF 410 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 K F Q+ +S + GTGLGL + K + + G+ ++ S +G+ Sbjct: 411 KSFSQVDSSTTRKFGGTGLGLVICKRLSELMGGRIWVESEEGQGS 455 >gi|6448582|emb|CAB61240.1| virulence protein S [Klebsiella pneumoniae] Length = 1218 Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 134/252 (53%), Gaps = 9/252 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+E ++ L K A + S KS FLAR+SHEIRTP++AI+GF E++ GP Sbjct: 686 QDITESRKLMEALQVEKDKAIEASRAKSRFLARMSHEIRTPVSAIMGFLELLAT---GPQ 742 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 E + ++ ++ D+LD+ KIESG L E V ++ ++ Sbjct: 743 SEREAQESLQLAYATAQSLIGLIGDVLDMEKIESGNFELTPEWVDIEALTQATMANFAGL 802 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE- 735 A +K + + S+ N IL D +++KQ+ N LSNAI FT SGG +I + T N+ Sbjct: 803 ARQKNLQLTVSYQLNAGGILFLDPQAIKQVLANFLSNAIKFTVSGGVEIKVETQPRENDA 862 Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +++L V+D+GVG++ E + KPF Q + + G+GLGL + K ++D G + Sbjct: 863 AQLMLSVKDSGVGISEEEQQLLFKPFSQASCGK--KQMGSGLGLTICKELMDRMHGTISV 920 Query: 795 FSTPAKGTLIEI 806 S P GT + I Sbjct: 921 ASHPGTGTTMSI 932 >gi|289664296|ref|ZP_06485877.1| histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 1191 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 132/243 (54%), Gaps = 10/243 (4%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S K+ FLA + HE+RTP+T ++G SE++ PL + R YA+ I Sbjct: 799 HKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQT---PL-DGRQQGYASAIQL 854 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 +G +L +VND LD+++IE+GK+ L + L + V + + LV+ A +K++ + + Sbjct: 855 AGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQKQLAFHCALDD 914 Query: 693 NIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGM 748 +P L D V+QI LN+L NAI FT G ++ HT + + + VRDTG GM Sbjct: 915 ALPPALHGDASRVQQILLNLLFNAIKFTERGSVHLRVAALPEHT-QQGIRVEVRDTGPGM 973 Query: 749 TNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + + + F Q + + R G+GLGL + + + A G + S +G + Sbjct: 974 SAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGSVTVISELGQGACFVVE 1033 Query: 808 FPL 810 PL Sbjct: 1034 LPL 1036 >gi|148658529|ref|YP_001278734.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148570639|gb|ABQ92784.1| GAF sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 2153 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 101/370 (27%), Positives = 181/370 (48%), Gaps = 35/370 (9%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +IL++ +G+ +++ I+ N A ++ G P ++ +P T E + S + Sbjct: 1787 AILQSLGEGVIVVDGGRKIVLYNAASEQILGIPATFVVDQPLTRIAEYHNGSTVVERAKR 1846 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSL-----RIIIKKLPF----SSCYS--LTMHDISEW 564 I L+Q L+ +T ++L L I++ P+ ++ Y + +HDI+ Sbjct: 1847 IYE-GLQQGLQALTETPKNHNRVLELPEPTQSIMLNFAPWVGPRNAIYGSVIVLHDITR- 1904 Query: 565 KQEKNKLSHAKKIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 E E+ K DF++ VSHE+RTPLT+I G+ +++ GPL N Sbjct: 1905 --------------EVEADRAKRDFISSVSHELRTPLTSIKGYVDLMLLGANGPL-NEEQ 1949 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + + + N ++D++ND+L+I +I+S K+ L FE V + + + ++ KR Sbjct: 1950 KKSLGVVKNNANRLMDLINDILEIGRIDSDKIQLTFEKVVIGDIFRDVEQTLRAEIKRKR 2009 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT-PSGGQIIISTTHTSNEEVILRVR 742 + A + P + AD R + QI LN+ SNA+ +T P G I+ N +L+V Sbjct: 2010 LSFTFDVAADTPPVFADKRRLTQIVLNLASNAVKYTYPEG---IVKLRAGLNPAGLLQVD 2066 Query: 743 --DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 D GVG++ + + + F + N + GTGLGL +AK+ V+ + G+ ++ S K Sbjct: 2067 VIDNGVGISPEQQQHLFRRFYRADNPLRDEAGGTGLGLSIAKSFVELHGGQMWVESDLGK 2126 Query: 801 GTLIEIIFPL 810 G+ I PL Sbjct: 2127 GSTFSFIIPL 2136 >gi|17232370|ref|NP_488918.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17134015|dbj|BAB76577.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 941 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/262 (30%), Positives = 146/262 (55%), Gaps = 21/262 (8%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +++ AK++A+ + KS+FLA +SHE+RTPL I+G+++++ + N ++ N Sbjct: 459 EITAAKEVADAANRAKSEFLANMSHELRTPLNGILGYAQIL---QLDSNTNDEQMQGLNT 515 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I G+ +L ++ND+LDI+KIE+ K+ L+ + L + + + +K I + Sbjct: 516 IYECGSHLLTLINDILDIAKIEAKKLELYPQEFDLGRLLLGVCEMCHIKVEQKGISFKYQ 575 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI----IISTTHT---SNEEVIL-- 739 F + IP + AD + ++Q+ +NILSNAI FT +G +++ T T +N IL Sbjct: 576 FNDYIPSKTFADEKRIRQVLINILSNAIKFTDNGTVTFDVEVVACTGTKLITNTNQILPV 635 Query: 740 -----RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 ++ DTG+GMT+ +L+K PF Q+ ++ + EGTGLGL ++ +++ + Sbjct: 636 HQLRFQIEDTGIGMTDEQLKKIFLPFEQVGDNLH-KSEGTGLGLAISSQILELMGSDIKV 694 Query: 795 FSTPAKGT--LIEIIFPLYDTS 814 S KGT ++ P+ DT Sbjct: 695 ESVYGKGTKFWFDLDLPIIDTG 716 >gi|284036668|ref|YP_003386598.1| histidine kinase [Spirosoma linguale DSM 74] gi|283815961|gb|ADB37799.1| histidine kinase [Spirosoma linguale DSM 74] Length = 1407 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 87/273 (31%), Positives = 141/273 (51%), Gaps = 18/273 (6%) Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 EE+ + L+I+ +KL Q+ A+ AE + KS FLA +SH Sbjct: 853 EEQAVHLQILNEKLE---------QQYGRLAQQSVLEQQARLEAETANKAKSVFLATMSH 903 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 EIRTPL +IG + ++++ PL + EYA+ I G +L ++ND+LD SKIESGK Sbjct: 904 EIRTPLNGVIGMTALLEDT---PLSEEQR-EYAHTIRSCGESLLGVINDILDFSKIESGK 959 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRTSFANNIPRILADLRSVKQIALNILS 713 M L +P+ L + E + + A + + LI P+IL D ++QI +N++ Sbjct: 960 MELEQQPIELRSCLEEVLDMFAGKAGQTGLDLIYQIDPLVPPQILGDSLRLRQILINLVG 1019 Query: 714 NAIHFTPSG----GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 NA+ FT G G +++ E+ VRDTG+G+ ++ + K F Q+ +S Sbjct: 1020 NAVKFTHQGEVMVGVQLVAVRPDQAVELAFTVRDTGIGIPGSKIGQLFKAFSQVDSSHSR 1079 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + GTGLGL +++ +++ G + S KGT Sbjct: 1080 QYGGTGLGLIISQRLIELMGGVIRVESEVGKGT 1112 >gi|149918850|ref|ZP_01907336.1| sensor histidine kinase [Plesiocystis pacifica SIR-1] gi|149820224|gb|EDM79641.1| sensor histidine kinase [Plesiocystis pacifica SIR-1] Length = 422 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/244 (32%), Positives = 124/244 (50%), Gaps = 15/244 (6%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA VSHE+RTPLT+IIGFSE++ GPL N EYAN I G +L ++ + Sbjct: 178 KSNFLATVSHELRTPLTSIIGFSEMLAKGIAGPL-NEEQTEYANMILDRGEELLRLITQI 236 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 L++SK+E G + L P L + V A + A+ + + FA+++P +L D V Sbjct: 237 LEMSKMEMGTVRLKLRPTPLADVVGRAFGSAVIPADRAHVNLVRDFADDLPLMLVDPDKV 296 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTS----------NEEVI----LRVRDTGVGMTN 750 Q+ +N+++N I F G + + EEV + V DTG+G+ Sbjct: 297 LQVLINLVTNGIKFNRPDGHVAVRAELAPIRRPFEEDFFGEEVADAMRVSVSDTGIGIPE 356 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +L + F Q+ +S G GLGL + K +++A+ G+ + S GT PL Sbjct: 357 DQLARIFDAFYQVDSSSTREHGGAGLGLSIVKKLIEAHGGEIWAESIVGVGTTFHFTLPL 416 Query: 811 YDTS 814 + + Sbjct: 417 AEGA 420 >gi|254283237|ref|ZP_04958205.1| PAS fold family protein [gamma proteobacterium NOR51-B] gi|219679440|gb|EED35789.1| PAS fold family protein [gamma proteobacterium NOR51-B] Length = 1947 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 137/256 (53%), Gaps = 17/256 (6%) Query: 553 CYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 C+++ + D++E L+HA +IA+ + KSDFLA +SHEIRTP+ AIIG S + Sbjct: 1191 CFAVGSVLSDVTE-------LNHAMEIADDANQAKSDFLANMSHEIRTPMNAIIGMSHLA 1243 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + Y + RS +L I+ND+LD SKIE+GK+++ LD+ + Sbjct: 1244 LQTDL----TSKQRNYIEKVHRSAESLLGIINDILDFSKIEAGKLDIEAVDFRLDDVMDN 1299 Query: 671 AISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG-GQIIIS 728 +SLV L A + + + ++P ++ D + QI +N+ +NA+ FT G + + Sbjct: 1300 LVSLVGLKAEDHGLELLLDVPPDLPTALIGDPLRLSQILINLGNNAVKFTEDGEVVVAVR 1359 Query: 729 TTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 SN EV + VRD+G+GM + + + F Q +S + GTGLGL ++K +V Sbjct: 1360 VEEESNAEVRMHFSVRDSGIGMNKEQQSRLFQSFSQADSSTTRKYGGTGLGLAISKQLVA 1419 Query: 787 ANMGKFYIFSTPAKGT 802 G+ ++ S P G+ Sbjct: 1420 MMDGEIWVESEPGVGS 1435 >gi|109900024|ref|YP_663279.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] gi|109702305|gb|ABG42225.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] Length = 903 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/255 (32%), Positives = 137/255 (53%), Gaps = 11/255 (4%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 SE + +L +K AE+ + KS FLA +SHEIRTP+ IIG +V+ P Sbjct: 370 SEQEMLNAELVESKHKAEQATVSKSMFLANMSHEIRTPMNGIIGLLDVVMKSDLTPTQR- 428 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 ++ N + S +++ ++ND+LD SK+E+GK+++ SL+ + ++ + A E Sbjct: 429 ---QHLNKVVYSSQILMSLINDILDFSKVEAGKLDIEQVEFSLNSVFANLLTNISARAQE 485 Query: 682 KRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEV 737 K + +R NI P ++ D + Q+ LN+ SNA+ FT +G I IS TH ++++V Sbjct: 486 KNLNVRFICDPNIPPTLIGDPLRISQVLLNLTSNAVKFTRNGS-ITISITHDVIPNSDKV 544 Query: 738 IL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +L RV+DTG+GM+ +L K + F Q + GTGLGL + K +V G Sbjct: 545 LLKARVKDTGIGMSKEQLGKVFESFTQADGTTSRDFGGTGLGLTIVKQLVHLMGGNVTAQ 604 Query: 796 STPAKGTLIEIIFPL 810 S G+ E+ F + Sbjct: 605 SELNVGSTFEVTFTV 619 >gi|256840824|ref|ZP_05546332.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|301309911|ref|ZP_07215850.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|256738096|gb|EEU51422.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|300831485|gb|EFK62116.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 423 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 143/260 (55%), Gaps = 18/260 (6%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + ++DI+E +Q++ L ++ A+K K+ F+A +SHEIRTPL AI+GF+ ++ Sbjct: 161 VMLNDITEQRQDQLALMKVQE-ADK---MKNAFIANMSHEIRTPLNAIVGFAHLVTETT- 215 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 EY + I+++ +L+L ++ND+LD+SKIESG++N + V L + EA + Sbjct: 216 ---NASEQREYFSIINKNCDLLLKLINDILDLSKIESGRLNYNVSEVELRDICQEAYVVQ 272 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 L L+ S A R+ D V+Q+ LN+LSNAI FT G IS + E Sbjct: 273 SLKMTSDVALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSKG---FISLFYEV-E 328 Query: 736 EVILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ +RV DTG+G++ +LE + F ++ + Q G GLGLP+ K +V+ G+ Sbjct: 329 DMFVRVSVMDTGIGISEEKLESVFERFVKLDDFYQ----GAGLGLPICKMIVEQLGGEIG 384 Query: 794 IFSTPAKGTLIEIIFPLYDT 813 + S KG+ PL T Sbjct: 385 VRSELGKGSTFWFTLPLVVT 404 >gi|254444196|ref|ZP_05057672.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] gi|198258504|gb|EDY82812.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] Length = 1220 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/233 (35%), Positives = 129/233 (55%), Gaps = 10/233 (4%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 KK AE+ + KS+FLA VSHEIRTP+ IIG ++ N PL ++ E + SG Sbjct: 814 KKRAERANQAKSEFLAMVSHEIRTPMNCIIGMTD---NLLATPLQKEQF-EMLQAVHASG 869 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 ++ I++D+LD SKIE+GK+ L P S ++ V + +L +EK I +RT ++ + Sbjct: 870 QSLVAIISDILDFSKIEAGKIELDSVPFSPEQTVKDVFNLFVRSCDEKNISLRTDISDEV 929 Query: 695 PRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMT 749 P I + D +KQ+ +N++ NA FT G I IS N++ +I V DTG+G+ Sbjct: 930 PDIAIGDPIRLKQVLINLVGNARKFTDQ-GLITISLNQQINDDGSLTLIYTVTDTGIGIE 988 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + ++ K F QI +S + GTGLGL + K +V+ G + S G+ Sbjct: 989 SANMDLLFKAFSQIDSSNTRKFGGTGLGLAICKRLVNLMNGDIGVSSQTGHGS 1041 >gi|126660462|ref|ZP_01731571.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] gi|126618275|gb|EAZ89035.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] Length = 842 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/239 (33%), Positives = 131/239 (54%), Gaps = 7/239 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +++ +L+ AK AEK + KS+FLA +SHE+RTPL AI+G+ +++ + + Sbjct: 365 QKQAEELAMAKMSAEKANQAKSEFLASMSHELRTPLNAILGYVQLMLRSTALSFDHRNNL 424 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I+ SG +L ++ND+L +SKIE+G+M L L + E +L+QL A+ K++ Sbjct: 425 Q---IINDSGEHLLGLINDVLQMSKIEAGQMVLTETDFDLYHLLYELDTLLQLKASSKQL 481 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + +P+ I D + ++Q+ +NI+ NAI FT GG I ++ V+D Sbjct: 482 QLSFIRDCTVPQYIRTDEKKLRQVLINIIGNAIKFTEKGG--ITVKVWCKGHQLFFAVQD 539 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TG G+ N ELE PF Q GEGTGLGLP++ ++ G + S +GT Sbjct: 540 TGQGIENEELEVLFSPFTQATAGID-SGEGTGLGLPISAKFINLMGGDITVNSRVGEGT 597 >gi|119945803|ref|YP_943483.1| fused multi-sensor protein [Psychromonas ingrahamii 37] gi|119864407|gb|ABM03884.1| PAS/PAC sensor hybrid histidine kinase [Psychromonas ingrahamii 37] Length = 882 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 106/375 (28%), Positives = 177/375 (47%), Gaps = 12/375 (3%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L S+++ DG+ I+ + I+ S N A ++FGY E+++ + + + S N YL Sbjct: 232 LSSVIDHMLDGLITIDAQCIVQSFNPAAERIFGYKSEEVVGGSVNILMPEPDYSEHNDYL 291 Query: 514 TEILSLDLRQT--LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKN 569 L + T + + +G K+ L + I ++ S + T+ DIS +Q + Sbjct: 292 KRHLDTGITNTTGISRKVVGKRKDGSTFPLDLSINEMHLSETHRFFCTVRDISVRQQHEQ 351 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK+ AE+ S K FLA +SHEIRTPL ++G EV+ PL + + Sbjct: 352 QLIAAKETAEQVSQAKDSFLATMSHEIRTPLAGMLGMLEVLS---MSPLDHEQEPILKAA 408 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 D + NL L IVND+LD SKI+ GK+ L + S+ + E ++ A+ K + + Sbjct: 409 WDSARNL-LRIVNDILDWSKIQDGKLILSPQSTSIPMLLQEVVNTYSHVASAKNLKLWQH 467 Query: 690 FANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIIST---THTSNEEVILRVRDTG 745 + + + D + Q+ N +SNA+ FT G + + S E + V+DTG Sbjct: 468 ADSQLSAAHIVDPLRLSQVLNNFVSNALKFTEQGEIELCAELLEQLESGERIRFFVKDTG 527 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 VG+ K + F Q + GTGLGL + + + GK + S P G + Sbjct: 528 VGIPKIVQPKLFERFQQESADTARQYGGTGLGLSICLHLAEFLDGKIELVSEPGLGAIFS 587 Query: 806 IIFPLYDTSHPHDCI 820 I L ++ P + + Sbjct: 588 ITVILPISAAPGEAL 602 >gi|108763883|ref|YP_632940.1| sensory box histidine kinase PhoR1 [Myxococcus xanthus DK 1622] gi|4467966|emb|CAB37946.1| histidine kinase PhoR1 [Myxococcus xanthus] gi|108467763|gb|ABF92948.1| sensory box histidine kinase PhoR1 [Myxococcus xanthus DK 1622] Length = 454 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 100/369 (27%), Positives = 183/369 (49%), Gaps = 32/369 (8%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSV 508 E L ++L+ ++G+ + + EG ++ N A+ L + ++P + + Sbjct: 109 EARTLTAVLDGMTEGVWVTDAEGTVVRHNDALRPLLASTNSPLTGQRPLALIRNEALHDA 168 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQ 566 + E S L TL+ + LS+R+ + K LP S+ HD++E + Sbjct: 169 VMRACRESASSHLELTLDG------HFPRTLSIRVTPLAKDLPGSAA---VFHDVTELR- 218 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG-PLGNPRYIE 625 +L +K DF+A VSHE+RTP+TAI G++E ++ P+ P+ +E Sbjct: 219 ---RLEKVRK----------DFVANVSHELRTPITAIRGYAETLQGGALNDPVMAPKMVE 265 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I R + ++V DLL++S++ES +++L V+L +A + A V+ A K + Sbjct: 266 I---IHRQSERLSELVEDLLELSRLESREVSLKLARVTLADAAARAADTVRPKAGGKGQV 322 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + ++ + D R+V+Q+ LN+L NA+ +TP+GG++ + + V+ RV+DTG Sbjct: 323 VSLHVPQDLLAV-GDPRAVEQVLLNLLDNAVKYTPAGGRVDVYGEYEQGRCVV-RVKDTG 380 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 VG+ + + F ++ + GTGLGL + K ++ A G+ + S P G+ Sbjct: 381 VGIEAKHQSRIFERFYRVDKGRSRDMGGTGLGLAIVKHLLQAMDGEVKVESEPNGGSTFT 440 Query: 806 IIFPLYDTS 814 I PL +S Sbjct: 441 IFLPLAASS 449 >gi|262275765|ref|ZP_06053574.1| signal transduction histidine kinase [Grimontia hollisae CIP 101886] gi|262219573|gb|EEY70889.1| signal transduction histidine kinase [Grimontia hollisae CIP 101886] Length = 730 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 139/262 (53%), Gaps = 16/262 (6%) Query: 556 LTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 LT DISE +Q + L AK A+ + K DFLA +SHEIRTPL AIIGF++ Sbjct: 189 LTATDISELRQREVALRQSEIALQKAKAEADAANQAKGDFLATMSHEIRTPLNAIIGFTK 248 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 + + + +Y N +D + + + ++ND+LD+SKIE+GK+ + P +L++ + Sbjct: 249 LCLHSEL----TLKQRDYLNKVDVASHSLSHLINDVLDLSKIEAGKLEMERVPFNLNQVL 304 Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727 S ++ ++ + ++P ++ D ++Q+ +N++ NAI FT G + Sbjct: 305 SNVRHVMWFDVAKRGLTFSMGVEPSVPANVIGDPLRLQQVLVNLVGNAIKFTDKGEVSVT 364 Query: 728 STTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + S +I RV DTG+GMT+ +L + + Q S R GTGLGL +++ Sbjct: 365 VSRKKSRARKSVTLIFRVCDTGIGMTDDQLSQLFSKYHQAEPSTSRRFGGTGLGLTISQK 424 Query: 784 MVDANMGKFYIFSTPAKGTLIE 805 +V+ G+ +I S +GT E Sbjct: 425 LVNLMKGRIHINSALGQGTECE 446 >gi|160936694|ref|ZP_02084061.1| hypothetical protein CLOBOL_01585 [Clostridium bolteae ATCC BAA-613] gi|158440485|gb|EDP18230.1| hypothetical protein CLOBOL_01585 [Clostridium bolteae ATCC BAA-613] Length = 819 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 133/250 (53%), Gaps = 10/250 (4%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-E 625 + +L A + AE+ + KSDFL+R+SH+IRTPL A++G ++ + L +P + + Sbjct: 279 QAKELRSALETAEEANRAKSDFLSRMSHDIRTPLNAVLGMKDIAEAH----LDDPAKVKD 334 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I SG +L ++ND+LD+SKIESG+M L + +SL E + ++++Q EK Sbjct: 335 CLRKIGLSGQHLLSLINDVLDMSKIESGEMVLREDSMSLPEVLENVVAIMQPQFGEKEQH 394 Query: 686 IRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--HTSNEEVILR-- 740 + + + L+D ++QI +NILSNA FTP G + + + + R Sbjct: 395 FSIRLRSVVHEQFLSDALRMRQIFINILSNAYKFTPVNGTVSMDVCEKQAVDGTALFRFS 454 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 + DTG+GM L + F + +S+ + EGTGLG+ + K VD G + S K Sbjct: 455 ITDTGIGMKPEYLAQIFTAFSRERDSRVDKTEGTGLGMAITKRFVDMMGGTIEVTSELGK 514 Query: 801 GTLIEIIFPL 810 GT + PL Sbjct: 515 GTCFRVELPL 524 >gi|150008002|ref|YP_001302745.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|149936426|gb|ABR43123.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] Length = 300 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 143/260 (55%), Gaps = 18/260 (6%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + ++DI+E +Q++ L ++ A+K K+ F+A +SHEIRTPL AI+GF+ ++ Sbjct: 38 VMLNDITEQRQDQLALMKVQE-ADK---MKNAFIANMSHEIRTPLNAIVGFAHLVTETT- 92 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 EY + I+++ +L+L ++ND+LD+SKIESG++N + V L + EA + Sbjct: 93 ---NASEQREYFSIINKNCDLLLKLINDILDLSKIESGRLNYNVSEVELRDICQEAYVVQ 149 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 L L+ S A R+ D V+Q+ LN+LSNAI FT G IS + E Sbjct: 150 SLKMTSDVALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSKG---FISLFYEV-E 205 Query: 736 EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ +R V DTG+G++ +LE + F ++ + Q G GLGLP+ K +V+ G+ Sbjct: 206 DMFVRVSVMDTGIGISEEKLESVFERFVKLDDFYQ----GAGLGLPICKMIVEQLGGEIG 261 Query: 794 IFSTPAKGTLIEIIFPLYDT 813 + S KG+ PL T Sbjct: 262 VRSELGKGSTFWFTLPLVVT 281 >gi|325496973|gb|EGC94832.1| hybrid sensory histidine kinase TorS [Escherichia fergusonii ECD227] Length = 912 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/250 (35%), Positives = 136/250 (54%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 432 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 487 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 488 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLMEST---LQLMSGRVKGRPIRLA 544 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT GQII+ + T E+ +L V D+G Sbjct: 545 TAIADDVPTALMGDPRRIRQVITNLLSNALRFTDE-GQIILR-SRTDGEQWLLEVEDSGC 602 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 603 GIDPAKLTEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 658 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 659 RLPLRIATAP 668 >gi|255013301|ref|ZP_05285427.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_7] Length = 423 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 143/260 (55%), Gaps = 18/260 (6%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + ++DI+E +Q++ L ++ A+K K+ F+A +SHEIRTPL AI+GF+ ++ Sbjct: 161 VMLNDITEQRQDQLALMKVQE-ADK---MKNAFIANMSHEIRTPLNAIVGFAHLVTETT- 215 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 EY + I+++ +L+L ++ND+LD+SKIESG++N + V L + EA + Sbjct: 216 ---NASEQREYFSIINKNCDLLLKLINDILDLSKIESGRLNYNVSEVELRDICQEAYVVQ 272 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 L L+ S A R+ D V+Q+ LN+LSNAI FT G IS + E Sbjct: 273 SLKMTSDVALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSKG---FISLFYEV-E 328 Query: 736 EVILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ +RV DTG+G++ +LE + F ++ + Q G GLGLP+ K +V+ G+ Sbjct: 329 DMFVRVSVMDTGIGISEEKLESVFERFVKLDDFYQ----GAGLGLPICKMIVEQLGGEIG 384 Query: 794 IFSTPAKGTLIEIIFPLYDT 813 + S KG+ PL T Sbjct: 385 VRSELGKGSTFWFTLPLVVT 404 >gi|225569244|ref|ZP_03778269.1| hypothetical protein CLOHYLEM_05326 [Clostridium hylemonae DSM 15053] gi|225162043|gb|EEG74662.1| hypothetical protein CLOHYLEM_05326 [Clostridium hylemonae DSM 15053] Length = 812 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/270 (30%), Positives = 135/270 (50%), Gaps = 23/270 (8%) Query: 560 DISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK- 611 DI+E +Q + KL+ A +AE + K+DFL+R+SHEIRTP+ AI G + + Sbjct: 262 DITELRQMQKKLTEQADALRDALSVAEHANQAKADFLSRMSHEIRTPMNAITGMTTIAAA 321 Query: 612 --NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 N R R + I S ++ ++ND+LD+SKI++GKM + E L Sbjct: 322 NINDR------QRVADCLEKIASSSKHLMTLINDVLDMSKIDAGKMKIAHETFDLQNVTE 375 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 +++ A+ K + + +L D + Q+ +N+LSNA+ FTP GG + + Sbjct: 376 SITAIIYPQADAKGLKFSVPLVDITDTVLTGDALRLNQVLINLLSNALKFTPEGGAVRLE 435 Query: 729 TTHTSNEEVILRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + +R+R DTG+GM+ ++ PF Q + GTGLG+P+ K + Sbjct: 436 IRQLQKKAGRVRLRFTVSDTGIGMSQEFMKHLFTPFEQESTATGRSAGGTGLGMPITKNL 495 Query: 785 VDANMGKFYIFSTPAKGT--LIEIIFPLYD 812 V G + S P KG+ ++E+ F L D Sbjct: 496 VTLMGGTVSVRSEPGKGSTFIVELDFDLPD 525 >gi|189910030|ref|YP_001961585.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774706|gb|ABZ93007.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 607 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 129/244 (52%), Gaps = 7/244 (2%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + +L + E S KS+FLA +SHEIRTPL +IG ++++ F + Y Sbjct: 287 QKRLQELYEKTEMASRAKSEFLASMSHEIRTPLNGVIGITQIL----FETDLDAEQKSYL 342 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I +G +L+I+ND+LD SKI++GK+ + P L V E L + AN K++ + Sbjct: 343 KTIADAGKALLNILNDILDFSKIDAGKLTIQKTPFHLANLVREIFDLFAIEANTKQLEFK 402 Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 ++P I++D ++QI N++ NAI FT +G +I + ++ +++D+G+ Sbjct: 403 FEINPDVPEVIVSDPSRIRQILFNLIGNAIKFTETG--FVILSIKKEEHSILFQIKDSGI 460 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G++ +L + F Q+ S + GTGLGL +++ +V GK + S G+ Sbjct: 461 GISYEKLTSLFQKFSQVDTSTSRKYGGTGLGLAISERLVGLLEGKIGVESVKGVGSTFWC 520 Query: 807 IFPL 810 FPL Sbjct: 521 SFPL 524 >gi|330958947|gb|EGH59207.1| PAS protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 1186 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 90/254 (35%), Positives = 136/254 (53%), Gaps = 12/254 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DISE +Q +L AK+ A+ S KS FLA +SHEIRTP+ A+IG E+ +K G L Sbjct: 674 DISERRQLIEELQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHGEL 733 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P IE A S N +LD++ D+LDI++IESG++ L+ E +L + + + Sbjct: 734 DRP-AIEVAYG---SANELLDLIGDILDIARIESGRLALNPERANLRQLAESVVRVFDGL 789 Query: 679 ANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIIS-----TTHT 732 A +K + + + I +L D KQI N++SNAI FT GQ+ IS T Sbjct: 790 ARQKDLDLVLELDSRINTDVLIDPLRFKQILSNLVSNAIKFTRC-GQVKISLQAPDTPDP 848 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 V L V+D+G+G++ + + +PF Q N+ Q+ G GLGL + +++ G Sbjct: 849 QQLHVHLTVQDSGIGISVEDQRRLFEPFAQADNTGQMARTGAGLGLVICRSLCTMMGGSL 908 Query: 793 YIFSTPAKGTLIEI 806 + S P GT I + Sbjct: 909 SLDSEPGIGTRINM 922 >gi|227329138|ref|ZP_03833162.1| hybrid sensory histidine kinase BarA [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 931 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/239 (35%), Positives = 134/239 (56%), Gaps = 12/239 (5%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + +K PL N +Y Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKT----PL-NTTQTDYLL 332 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS N +L+I+ND+LD SK+E+GK+ L P SL + + + L+ A+EK + + Sbjct: 333 TIERSANNLLNIINDVLDFSKLEAGKLVLEDIPFSLHNTLDDVVMLLAHTAHEKGLELTL 392 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRD 743 S N++P + + D ++QI N+L NAI FT G I I E ++ +++RD Sbjct: 393 SIQNDVPEQFVGDPLRIQQIITNLLGNAIKFTEQGN-IDIRVEKRRQELHQVQLEVQIRD 451 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TG+G+ + + + F Q S R GTGLGL + + +V G S +KG+ Sbjct: 452 TGIGIAELQQSQLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSELSKGS 510 >gi|196228199|ref|ZP_03127066.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196227602|gb|EDY22105.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 1248 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 98/359 (27%), Positives = 170/359 (47%), Gaps = 20/359 (5%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYL 513 SI E +GI EG +S N A++++ GY D L T +Q P + Sbjct: 467 SIFENAIEGIFQTTPEGSYMSVNPALAEICGYESPDELTSKITHIAKQLYVRPGRRAEFT 526 Query: 514 TEILSLDLRQTLEKITLGSTKE-----EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568 +L + E + E+ ++R KL + Y T+ DI+ ++ Sbjct: 527 AMMLEKGAVKDFESQIYRRDRSIIWISERARAVRDQDGKLLY---YEGTVEDITARRETD 583 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 + + A+ A + + KS+FLA +SHEIRTP+ IIG + ++ + +P+ ++ Sbjct: 584 DAIKKARDAALESARLKSEFLANMSHEIRTPMNGIIGMTGLLLDTEL----SPKQRDFTQ 639 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I S + +L I+ND+LD SKIE+G + L V ++ L+ A + I + + Sbjct: 640 TISSSADALLTIINDILDFSKIEAGMLAFEEIDFQLGTVVEGSVELLAARAASREIELAS 699 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR----D 743 +++P L D ++Q+ N++ NA+ FT G++++ N E +R D Sbjct: 700 LVYHDVPTNLRGDPGRLRQVLTNLIGNAVKFTDK-GEVVVRANCQENAETHTTIRFSVTD 758 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TG+G+++ E+ +PF Q S R GTGLGL + K +V G+ + S KG+ Sbjct: 759 TGIGISSEAQERLFQPFVQADGSTTRRFGGTGLGLAICKQLVARMGGEIGVTSEAGKGS 817 >gi|91227847|ref|ZP_01262020.1| sensor histidine kinase/response regulator [Vibrio alginolyticus 12G01] gi|91188357|gb|EAS74653.1| sensor histidine kinase/response regulator [Vibrio alginolyticus 12G01] Length = 932 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 140/252 (55%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + ++Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQ-MDYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L+I+ND+LD SK+E+GK+ L P E++ E I+L A+EK + I Sbjct: 331 TIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITL 390 Query: 689 SFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDT 744 I P ++ D ++QI N++ N+I FT G + + S + V L+ VRDT Sbjct: 391 KVDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQSGDSVELQFMVRDT 450 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTF 510 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 511 WFTVRLHSTEMP 522 >gi|188534845|ref|YP_001908642.1| hybrid sensory histidine kinase BarA [Erwinia tasmaniensis Et1/99] gi|188029887|emb|CAO97771.1| Signal transduction histidine-protein kinase BarA [Erwinia tasmaniensis Et1/99] Length = 909 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 86/261 (32%), Positives = 143/261 (54%), Gaps = 14/261 (5%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK+ A++ + KS+FLA +SHE+RTPL +IGF+ Q N +Y + Sbjct: 278 ELDLAKRRAQEAARIKSEFLANMSHELRTPLNGVIGFTR----QTLKTALNSTQRDYLHT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E + L+ A+EK + + + Sbjct: 334 IERSANNLLGIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILRVRDTG 745 +++P I+ D ++QI +N+L NAI FT SG I + +SN E+ +++ DTG Sbjct: 394 IQSDVPDNIIGDPMRMQQIIVNLLGNAIKFTESGNIDIRVEKRASSNNRMELEVQIHDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL-- 803 +G+++ + + + F Q S R GTGLGL + + +V+ G+ S +G+ Sbjct: 454 IGISDKQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFW 513 Query: 804 --IEIIFPLYDTSHPH--DCI 820 + + S PH DC+ Sbjct: 514 FHVNLALNPNAASDPHIMDCL 534 >gi|325103588|ref|YP_004273242.1| integral membrane sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] gi|324972436|gb|ADY51420.1| integral membrane sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] Length = 715 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 133/232 (57%), Gaps = 13/232 (5%) Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 ++A +++ K+DFLA +SHEIRTPL +I+GFSE ++ + + + + Sbjct: 333 EVAIRQTKIKTDFLAHMSHEIRTPLNSILGFSEQLEKSDLSGEQRKQLVS----VQSASQ 388 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR--ILIRTSFANN 693 ++L IVND+LD+SK+E+GK+N+ P + + + +S ++++A++K +L+ F + Sbjct: 389 ILLSIVNDILDLSKLETGKLNIQSFPFFPRKTIEDIVSTLKIHADKKHLDLLVNYHFDQH 448 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR--DTGVGMTNY 751 I ++ D +KQ+ +N+++NAI FT SG ++ NE ++R+ DTG+G+ Sbjct: 449 I-QLNGDEYRLKQVVINLVTNAIKFTKSGS---VTINAAINEHCVMRIEVVDTGIGIDKE 504 Query: 752 ELEKAMKPFGQIPN-SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 L+ F QI N S R GTGLGL + K ++ + G + S KG+ Sbjct: 505 NLKMVFDEFTQILNKSDNNRHNGTGLGLAICKKIIQSQRGFIEVESEIGKGS 556 >gi|301069192|dbj|BAJ11975.1| histidine kinase ExpS [Pectobacterium carotovorum subsp. carotovorum] Length = 933 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/239 (35%), Positives = 134/239 (56%), Gaps = 12/239 (5%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + +K PL N +Y Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKT----PL-NTTQTDYLL 332 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS N +L+I+ND+LD SK+E+GK+ L P SL + + + L+ A+EK + + Sbjct: 333 TIERSANNLLNIINDVLDFSKLEAGKLVLEDIPFSLHNTLDDVVMLLAHTAHEKGLELTL 392 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRD 743 S N++P + + D ++QI N+L NAI FT G I I E ++ +++RD Sbjct: 393 SIQNDVPEQFVGDPLRIQQIITNLLGNAIKFTEQGN-IDIRVEKRRQELHHVQLEVQIRD 451 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TG+G+ + + + F Q S R GTGLGL + + +V G S +KG+ Sbjct: 452 TGIGIAELQQSQLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSELSKGS 510 >gi|218246315|ref|YP_002371686.1| Hpt sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] gi|218166793|gb|ACK65530.1| Hpt sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] Length = 950 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/251 (30%), Positives = 138/251 (54%), Gaps = 17/251 (6%) Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 +K+ +++++ K I E + K++F+A + HEIRTPL A+ G + ++ + PL NP+ Sbjct: 267 FKELESQMAKQKTIKEVNQA-KNEFMAMIGHEIRTPLNAVTGMTGLLLD---TPL-NPQQ 321 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 E+ N I SG +L ++N++LD SKIE+ K+ L +P L + E + L A++K+ Sbjct: 322 EEFVNIIRSSGENLLTMINNILDFSKIEAQKLELEEQPFELGLCIEEVLRLFVPQASQKQ 381 Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----------- 731 + + N P I+ D ++QI N+L NA+ FT G ++ + Sbjct: 382 LELAYLIEPNTPSAIVGDSTRLRQILANLLGNAVKFTEKGEVVVYVSAQPLPNSDRTDKT 441 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 +N E+ V+DTG+G+ + ++ +PF Q+ S + GTGLGL +++ + + GK Sbjct: 442 LANYELRFAVKDTGIGIAPQDCDRLFQPFSQVDASTTRKYGGTGLGLVISQRLSELMGGK 501 Query: 792 FYIFSTPAKGT 802 ++ ST KG+ Sbjct: 502 MWVHSTEGKGS 512 >gi|329901629|ref|ZP_08272868.1| sensor histidine kinase, putative [Oxalobacteraceae bacterium IMCC9480] gi|327549058|gb|EGF33662.1| sensor histidine kinase, putative [Oxalobacteraceae bacterium IMCC9480] Length = 762 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 134/255 (52%), Gaps = 6/255 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DIS+ + K + AK AE+ ++ KS FL+ +SHEIRTP+ IIG + ++ Sbjct: 359 VIFDISQQHRIKEQWRAAKTCAEQANAAKSVFLSTMSHEIRTPMNGIIGMTGLLLET--- 415 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL N E+A I+ S + +L ++ND+LD S+IE+GK+ + +L V+ I ++ Sbjct: 416 PL-NTEQREFARIIETSADALLTVINDILDFSRIEAGKLMVESVAFALPATVAGCIDVIA 474 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A +K + + + +P ++ D ++QI LN+L NAI FT + G++ + T Sbjct: 475 GKACDKGLALNCTIDPALPVFVMGDAGRLRQILLNLLGNAIKFTAT-GKVALHVTPVLAG 533 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V V D+G+G+ + PF QI S + GTGLGL + K +V+ G Sbjct: 534 AVRFVVADSGIGIDQKNAAELFIPFHQIDGSITRKYGGTGLGLSITKRLVELMGGTIGFE 593 Query: 796 STPAKGTLIEIIFPL 810 S P +G + PL Sbjct: 594 SVPGQGATFWVELPL 608 >gi|300717614|ref|YP_003742417.1| Capsular synthesis regulator component C [Erwinia billingiae Eb661] gi|299063450|emb|CAX60570.1| Capsular synthesis regulator component C [Erwinia billingiae Eb661] Length = 949 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 135/256 (52%), Gaps = 9/256 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 446 DVSARVKMEESLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSL---- 501 Query: 620 NPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P+ +E ++ S +L+L I++D+LD SKIES ++ + S E ++ S Sbjct: 502 -PQGVESLVTAMNNSSSLLLKIISDILDFSKIESEQLRIEPREFSPREVITHISSNYLAM 560 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 +KR+ + +++P L D ++Q+ N+L+NAI FT +GG II + + Sbjct: 561 VVKKRLTLWCFIDSDVPVTLDGDPLRLQQVISNLLNNAIKFTHTGG--IILQVFVKDGYL 618 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 RVRDTGVG+ E+ + PF Q+ N Q +GTGLGL + + +++ G + S Sbjct: 619 AFRVRDTGVGIPAKEITRLFDPFFQVGNGVQRNFQGTGLGLAICEKLINMMDGDIEVDSE 678 Query: 798 PAKGTLIEIIFPLYDT 813 P G+ + PLY+ Sbjct: 679 PGMGSQFVVRIPLYNA 694 >gi|260102099|ref|ZP_05752336.1| sensory box histidine kinase VicK [Lactobacillus helveticus DSM 20075] gi|260084086|gb|EEW68206.1| sensory box histidine kinase VicK [Lactobacillus helveticus DSM 20075] Length = 619 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 103/382 (26%), Positives = 185/382 (48%), Gaps = 42/382 (10%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E +L S+L SDG+ +R G + N ++I+ +P L Sbjct: 262 ERRRLDSVLSHMSDGVLATDRHGNVSVVNHMALSYLNADEDEIINRPIAEVLG------- 314 Query: 510 NHYLTEILSLDLRQTLEKITLG---STKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEW 564 L + S DL + ++I + T++E +L S +I + F S +HD++E Sbjct: 315 ---LKDTSSQDLISSQKEIVVTVKPGTRDEIILHASFSLIKRVTGFVSGSVCVLHDVTE- 370 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGNPRY 623 Q+KN+ S + F++ VSHE+RTPLT++ + E + + P P++ Sbjct: 371 -QQKNENSQRQ------------FVSNVSHELRTPLTSLQAYIEALNEGAWKDPEIAPKF 417 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY----- 678 +E A + + ++ ++NDLL +S+++ G + E V+L++ VS ++ + Sbjct: 418 LEVAQ---QETSRMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVSHILNRFDMIVKTDK 474 Query: 679 --ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 ++K+ I+ N + D + Q+ NI++NAI ++P GG I + TH S Sbjct: 475 NKGHKKKYTIKRELGNQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTH-SQGH 533 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 VIL + D G+G+ +L K F ++ ++ GTGLGL +AK +V+A+ G+ + S Sbjct: 534 VILSISDQGLGIPRKDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADS 593 Query: 797 TPAKGTLIEIIFPLYDTSHPHD 818 + KG+ I P Y+T D Sbjct: 594 SEGKGSTFYISLP-YETMTEED 614 >gi|254457203|ref|ZP_05070631.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Campylobacterales bacterium GD 1] gi|207085995|gb|EDZ63279.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Campylobacterales bacterium GD 1] Length = 740 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 131/231 (56%), Gaps = 6/231 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +F + +SHE+RTPL AI+GF ++ Q + + +++EY ++ S +L+++ND+ Sbjct: 375 KEEFFSNMSHELRTPLNAILGFLNILNKQ----ISDKKHLEYLRHVGTSSKQLLNLINDI 430 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRS 703 LD++KI++G+ + + E + + + +K I +++ ++++ + + DL Sbjct: 431 LDLAKIKTGEFTVDAHEFNAYEELKDYAQQFEGMLIDKNISLKSHISHDLKGVFIGDLFR 490 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 + QI LN+LSNAI FTP GG I + + E+ + V+DTG+GM+ +K KPF Q Sbjct: 491 ISQIILNLLSNAIKFTPDGGTISLYIDY-KEEKFSIVVQDTGIGMSPDVQDKIFKPFVQA 549 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 S + GTGLGL + + +++ GK + S KG+ ++ P+ S Sbjct: 550 DGSTTRKYGGTGLGLSITQKLIELMNGKLILESQEGKGSTFKVKIPMQKIS 600 >gi|187478370|ref|YP_786394.1| virulence sensor protein [Bordetella avium 197N] gi|115422956|emb|CAJ49485.1| virulence sensor protein [Bordetella avium 197N] Length = 1219 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 104/386 (26%), Positives = 189/386 (48%), Gaps = 28/386 (7%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI-----LRK 495 R+ +R + ++ + +++ + + + +REG +++ NR+ + F + + + Sbjct: 572 RVAERALSDQLAFMRVLIDGIPNPVFVRDREGRMVTCNRSYLETFDVTRDAVQGRTLIDS 631 Query: 496 PFTVFLEQNTPSVMNHYLTEIL--SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 P + + +V YL + S + Q +E +TL K I LP+S Sbjct: 632 PIGLEDPEQAKTVHQQYLDAMQHNSGAVFQDIE-VTLHGEKR------YIYHWLLPYSDS 684 Query: 554 YSLTMHDISEWKQEKNK------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 I W + L AK+ A+ + KS FLA +SHEIRTP+ AIIG Sbjct: 685 LGRVKGLIGGWTDLTERIRLLRDLHEAKEEADAANRAKSTFLATMSHEIRTPMNAIIGML 744 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 E ++ +R R Y S +LD++ D+LDISKIE+ ++ L P L + Sbjct: 745 E-LELRRPADQATDRSALQITY--DSARSLLDLIGDILDISKIEADRLELSPHPTDLRKL 801 Query: 668 VSEAISLVQLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 + I++ Q A + + + + P +L D +KQ+ N++SNA+ FT GG I+ Sbjct: 802 LDGIINVFQGLARQHGLSLTLQIDPPHPPHVLLDATRLKQVISNLVSNALKFTEVGGVIV 861 Query: 727 ---ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN-SQQIRGEGTGLGLPLAK 782 + T ++ L V D+G G+++ + ++ +PF Q+ + ++ R GTGLGL +++ Sbjct: 862 SLKVRTEEDGRAKIELAVDDSGPGISSADRQRLFEPFTQVHDQAKAARAAGTGLGLVISR 921 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808 +++A G F + S P KGT I+++ Sbjct: 922 RLIEAMGGHFDLSSIPGKGTRIDVLL 947 >gi|332707689|ref|ZP_08427717.1| PAS domain S-box protein [Lyngbya majuscula 3L] gi|332353598|gb|EGJ33110.1| PAS domain S-box protein [Lyngbya majuscula 3L] Length = 656 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 91/294 (30%), Positives = 147/294 (50%), Gaps = 43/294 (14%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DI+E K + +L AK+ AE+ + KS F+A +SHE+RTPL I+G S+++ + Sbjct: 346 VRDITENKLAQIELQQAKEAAEEANHAKSAFMASMSHELRTPLNGILGLSQLLW-EDAEE 404 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 LG ++ I SG +L +++D+LDISKIE+GKMNL+ E + + E SL + Sbjct: 405 LGYDEFVSDLKEIWNSGTHLLTLISDVLDISKIEAGKMNLYLESFDVTTLIVELESLAKP 464 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG--------------- 722 +K ++ S A+++ ++AD +KQ+ LN+LSNA FT +G Sbjct: 465 LMQKKNNSLKISSADSLGTMVADRTKLKQVLLNLLSNAAKFTETGTITFSIKREGSNHSN 524 Query: 723 --GQIII----------STTHT---------------SNEEVILRVRDTGVGMTNYELEK 755 ++I+ S ++T S+ +I V DTG+GMT +L K Sbjct: 525 GKNELILELSQPYSRSSSASYTTIDIPTSSNTLANLESDHWLIFSVADTGIGMTPEQLNK 584 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +PF Q NS + GTGLGL +++ + + S G+ I P Sbjct: 585 VFQPFTQADNSTTKKYGGTGLGLSISQRFCQMMGCQITVESQIGVGSTFSIRCP 638 >gi|197106645|ref|YP_002132022.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] gi|196480065|gb|ACG79593.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] Length = 589 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/230 (33%), Positives = 123/230 (53%), Gaps = 8/230 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FL+ V+HE+RTP+ ++G + ++ +PR EYA+ I RSG+ +L I+ND+ Sbjct: 215 KSAFLSMVTHELRTPMNGVMGMARALQQTDL----SPRQREYADTIVRSGDGLLAILNDV 270 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703 LD SKIE+G+++L P +L +++ L A K + + +P +L D Sbjct: 271 LDHSKIEAGRLDLEVAPFNLRAVSQQSLQLWTEAAAAKGLELDCDIDPELPAHVLGDETR 330 Query: 704 VKQIALNILSNAIHFTPSG--GQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPF 760 V+QI LN+LSNA+ FT +G + H E + + V DTG GMT ++ + +P+ Sbjct: 331 VRQIILNLLSNALKFTEAGRVALALRRAPHADGEGGVEILVSDTGPGMTAEQVARLFRPY 390 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 Q S R GTGLGL + + G+ + S P +G+ + PL Sbjct: 391 SQAEASTARRFGGTGLGLSICHRLSTMMGGEIGVESEPGRGSTFRVWLPL 440 >gi|119513099|ref|ZP_01632152.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Nodularia spumigena CCY9414] gi|119462233|gb|EAW43217.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Nodularia spumigena CCY9414] Length = 444 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 126/228 (55%), Gaps = 2/228 (0%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S KS FLA +SHE+RTP+ AIIGFS+++ +FG L + + ++ NL++ ++ Sbjct: 171 SRLKSQFLATMSHELRTPMNAIIGFSQILLRPKFGKLTHQQTDMVERILNNGKNLLM-LL 229 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 N++LD SK+E G++ L E L + ++ ++ ++ A K++ +R P + D Sbjct: 230 NEVLDFSKLEGGRLELKPELFDLTKIINIVVAQMRSLAEAKKLSLRVDIDMQQPLVFNDS 289 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 V+QI +N+LSNAI FT SG I I ++ + VRDTG+G+ + + + + F Sbjct: 290 VRVRQILINLLSNAIKFTESGC-IWIEVKELPQNQLAIAVRDTGIGIASRDFKHIFEAFR 348 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q+ S + GTGLGL + ++V G+ + S G++ I P Sbjct: 349 QVDQSITRKYPGTGLGLAIIDSLVQMMGGRIILESQLGVGSMFRIEIP 396 >gi|261211547|ref|ZP_05925835.1| BarA sensory histidine kinase [Vibrio sp. RC341] gi|260839502|gb|EEX66128.1| BarA sensory histidine kinase [Vibrio sp. RC341] Length = 925 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 137/252 (54%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQ-TDYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L I+ND+LD SK+E+GK+ L P E + E ++L A+EK + I Sbjct: 331 TIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITL 390 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDT 744 IPR ++ D ++Q+ N++ N+I FT G + + ++VI VRDT Sbjct: 391 KIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRSLRDDVIDLQFMVRDT 450 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTF 510 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 511 WFTLRLHTTELP 522 >gi|119715355|ref|YP_922320.1| ATPase domain-containing protein [Nocardioides sp. JS614] gi|119536016|gb|ABL80633.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614] Length = 847 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/266 (30%), Positives = 141/266 (53%), Gaps = 17/266 (6%) Query: 558 MHDISEWKQ-EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M + +W+ + +L+ A+ +A + S KS FLA +SHEIRTP+ +IG + +++ Sbjct: 305 MGRMLQWEVVARRELAAARDVALEASRSKSTFLATMSHEIRTPMNGVIGLTGLLEATDL- 363 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + R +YA + + N ++ I+ND+LD SK+E+G+++L L + V E L+ Sbjct: 364 ---DERQRQYAEGVSSAANALMTIINDILDFSKVEAGRLDLETIDFDLVQVVEEVAELIA 420 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A K + + + +P L D ++Q+ LN+ SNA+ FT G ++ ++ S + Sbjct: 421 EPAQSKGLELLAYCSPELPTCLRGDPSRLRQVLLNLASNAVKFTARGEVLVRASLEASLQ 480 Query: 736 E---------VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + V++R V DTG+G+ + E+ +PF Q +S R GTGLGL +++ + Sbjct: 481 DGPEAGAEAGVVVRFEVTDTGIGVEEADRERLFEPFSQADSSTTRRYGGTGLGLAISEHL 540 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810 V A G+ + S P G+ PL Sbjct: 541 VTAMGGQIGVDSRPGLGSTFWFTLPL 566 >gi|153864037|ref|ZP_01997058.1| signal transduction histidine kinase [Beggiatoa sp. SS] gi|152146467|gb|EDN72941.1| signal transduction histidine kinase [Beggiatoa sp. SS] Length = 612 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/264 (30%), Positives = 142/264 (53%), Gaps = 18/264 (6%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E ++ + + K E S +KS+FLA +SHE+RTPL +++ ++++ N + G L N Sbjct: 34 AEMEKARAAIEFKAKELELASQYKSEFLANMSHELRTPLNSLLILAQLLANNKPGNL-NE 92 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + + YA I +G+ +L ++ND+LD+SK+E+GKM ++ E +SL + + A+E Sbjct: 93 KQVSYAQTIQSAGSDLLTLINDILDLSKVEAGKMEVNIEALSLSDLLEMLEQKFSPLASE 152 Query: 682 KRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---- 736 K ++ A+++P L D + +KQI N+LSNA FT S G+I++S +N E Sbjct: 153 KGLVFEKRLADDLPPFLQTDGQRLKQILNNLLSNAFKFT-SLGKIVLSIQRVTNIEDESY 211 Query: 737 -----------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + + V DTG+G+ + + + F Q+ + R GTGLGL +++ + Sbjct: 212 QLGKMEARENLIAISVIDTGIGIPKDKQQLIFEAFQQVDGTTSRRYGGTGLGLSISRQLA 271 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 G+ + S GT + P Sbjct: 272 RLLGGEITLHSEEGSGTTFTLYLP 295 >gi|94499808|ref|ZP_01306344.1| putative sensor protein [Oceanobacter sp. RED65] gi|94428009|gb|EAT12983.1| putative sensor protein [Oceanobacter sp. RED65] Length = 938 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 108/362 (29%), Positives = 177/362 (48%), Gaps = 21/362 (5%) Query: 454 LCSILEATSDGIAI--INR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 L ++A+ G+ I IN+ + ++ NR KL GY +++ K +NT Sbjct: 292 LSEAIDASPVGVTIADINKPDEPLIYANRFFYKLTGYSESEVIGKNCRFLQGRNTNREAR 351 Query: 511 HYLTEILSLDLRQTLEKITL---GSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWK 565 + + ++ + LE + G+ EKL L I K C Y DIS Sbjct: 352 LIIRDAINTRRKIVLELLNYKKDGTEFWEKLF-LSPIFKD---GECRAYVGIQQDISYEI 407 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG-NPRYI 624 Q K K+ AK+ AE+ + KS+FLA +SHEIRTP+ ++G ++++ + G N + Sbjct: 408 QNKTKMIQAKEQAERATQAKSEFLANMSHEIRTPMNGVLGMLKLVRKSK----GLNRDQL 463 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 N S +L ++ND+LD SKIE+GK+NL +L E +S+ + +A++K I Sbjct: 464 HQINLAHTSAESLLVVINDILDFSKIEAGKINLETIDFNLLEWISDISESLAFHAHKKDI 523 Query: 685 LIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LR 740 + ++ ++ D V+Q+ N++ NAI FT G I +T +I Sbjct: 524 DLSLDISDVTYFNLIGDPNRVRQVISNLVGNAIKFTNDGWVKIKLSTKPEKSNLIKLSCS 583 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 ++DTG+G+ L+K F Q NS + GTGLGL +AK + + G + STP Sbjct: 584 IKDTGIGIAEDRLDKLFSAFEQADNSTTRQYGGTGLGLAIAKKLCEIMGGDVTVSSTPGV 643 Query: 801 GT 802 G+ Sbjct: 644 GS 645 >gi|307300057|ref|ZP_07579842.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium meliloti BL225C] gi|306904946|gb|EFN35529.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium meliloti BL225C] Length = 917 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 112/386 (29%), Positives = 186/386 (48%), Gaps = 21/386 (5%) Query: 439 DTRINKRKMEIEVMQ----LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 ++ I K+K+E E + + + LE SDG + + E IL N ++F + LR Sbjct: 267 ESAIEKKKLEDEAERQRRTIAAALEVISDGFVLYDSEDRILVANSKYCEIFPSHKPNTLR 326 Query: 495 -KPFTVFLEQNTPSVMNHYLTEILS----LDLRQTLEKITLGSTKEEKLLS--LRIIIKK 547 + F +EQN M E S +D R L + G E++ +RI +K Sbjct: 327 GRSFREIVEQNLE--MGQVDLEGKSPQEWVDERVRLHRDPAGLVDEKRFGDKWVRISKRK 384 Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 +P ++ DI+E KQ + +L AK AE + KS FLA +SHE+RTPL AIIG+S Sbjct: 385 IPDGGTVAV-YTDITELKQRQVELERAKSHAESANEAKSRFLASMSHELRTPLNAIIGYS 443 Query: 608 E-VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 E +I+ R + + + I +G +L ++ND+LD+SKIE+ KM + E S+ + Sbjct: 444 EMLIEEARDHE--DEELVPDLDKIASAGRHLLSLINDILDLSKIEANKMEVFLETFSVAD 501 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 + + + V F ++ + +D ++Q N+LSNA FT +GG++ Sbjct: 502 LLRDVAATVAPLMARNGNEFTQDFETDLGEMHSDQTKLRQNLFNLLSNAAKFT-NGGRVT 560 Query: 727 ISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + + ++ +V DTG+GM+ + E+ F Q S GTGLGL + ++ Sbjct: 561 LRVRREQRADRDWLVFQVTDTGIGMSPEQQERLFNAFTQADASTTRNYGGTGLGLSITRS 620 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809 G + S KG++ + P Sbjct: 621 FCRMIGGVVTVESEVGKGSVFTMEVP 646 >gi|78357811|ref|YP_389260.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220216|gb|ABB39565.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 773 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 99/361 (27%), Positives = 184/361 (50%), Gaps = 20/361 (5%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRK----PFTVFLEQNTPSVMNH 511 I E +GI I G +++ N A++++ GY V ++L + P + + + M Sbjct: 254 IFENALEGIFQITGRGYLINANPALARMLGYSSVMELLAERGTTPLKSLVNRRDLARMLR 313 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK---LPFSSCYSLTMHDISEWKQEK 568 L ++D +T T G +S R I K+ P S Y + DI+E ++ + Sbjct: 314 MLRAKGAVDGYET-RVYTKGGGITWISVSARTIAKEETGQPESFRYEGFVKDITEHRRLR 372 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L + + KSDFLA +SHEIRTP+ +++G +E + PL + E + Sbjct: 373 -ELEQTRTAMIEADKAKSDFLAHMSHEIRTPMNSVLGMAEQMLRT---PLSAEQK-ECMD 427 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + SG +L ++ND+LD++++E G++ L P ++ V ++ L A +K IL+ Sbjct: 428 VLKNSGESLLHLINDILDLTRVEGGQLALASAPFTVHAVVYGVRDMLSLQARQKNILLAA 487 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRD 743 + A ++ + + D + ++QI +N+L NA+ FT +G ++ + + + +++ VRD Sbjct: 488 TIAPDVRKNHMGDAQRLQQILVNLLGNAVKFTDNG-EVSLHVSRAPDAVHDGDLLFTVRD 546 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+T E + + F Q + R G+GLGL +++ +VD G + S P GT Sbjct: 547 TGIGITPAEQSRLFQKFSQASTAIHSRYGGSGLGLAISRHLVDLMGGTIRLESEPGVGTT 606 Query: 804 I 804 + Sbjct: 607 V 607 >gi|255533357|ref|YP_003093729.1| ATPase [Pedobacter heparinus DSM 2366] gi|255346341|gb|ACU05667.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM 2366] Length = 706 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/271 (31%), Positives = 145/271 (53%), Gaps = 10/271 (3%) Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 II L S + + +++I + + + L K A ++S KS FLA +SHEIRTPL ++ Sbjct: 296 IINVLLLISLFVIILYNIIKLYKNERVLIGLGKRAAQDSHSKSRFLANMSHEIRTPLNSV 355 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 +GFSE Q + +P + + I S ++L +VN++LD SK E GK+NL P Sbjct: 356 VGFSE----QLSQGILSPEQKDQVDAIRNSSEMLLSLVNEILDFSKYEVGKINLENVPFL 411 Query: 664 LDEAVSEAISLVQLYANEKRILI--RTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 ++ + E + + + A K +L+ + S I + D +KQ+ +N+L+NAI FT S Sbjct: 412 PEDEIMEVFNSMNVLAINKNLLLENKVSLEKGIC-LAGDRLRLKQLIMNLLTNAIKFTAS 470 Query: 722 GG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 G ++ ++ + + ++V DTG+G+ + E F Q+ +S + R +GTGLGL Sbjct: 471 GKVTLKVNLAVHGKKHALLKVQVEDTGIGIAPEDQEFIFDEFAQVYSSTKSRQQGTGLGL 530 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + K +V+ GK + S KG++ P Sbjct: 531 AICKKIVELQGGKISVNSVMGKGSVFSFEIP 561 >gi|330950455|gb|EGH50715.1| PAS protein [Pseudomonas syringae Cit 7] Length = 1350 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/255 (32%), Positives = 129/255 (50%), Gaps = 8/255 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+E +L AK AE ++ KS FLA +SHEIRTP+ A+IG S ++ N Sbjct: 613 QDITERLHHSAELHAAKSSAEAANAAKSLFLANMSHEIRTPMNAVIGISHLLHNTAL--- 669 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N + + + +G +L I+ND+LDI+KIE+G+M L P S + + E L Sbjct: 670 -NDQQRQLLTKLQIAGRTLLGIINDILDIAKIEAGEMRLEHNPFSPRQLLDELGELFTPQ 728 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE 736 A EK + S ++P +++ D V QI +N++ NA+ FT GG + +S + Sbjct: 729 AQEKGLRFSVSVVASLPGQLIGDALRVNQILMNLVGNALKFTTVGGVDVTVSREDDHADT 788 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 LR V+DTG G+ L + PF Q S R GTGLGL + + + + G+ + Sbjct: 789 CWLRFSVQDTGCGIPANALGQLFAPFTQADASTTRRFGGTGLGLSVVRGLAEQMGGRIGV 848 Query: 795 FSTPAKGTLIEIIFP 809 S G+ + P Sbjct: 849 ESELGTGSEFWVELP 863 Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 15/170 (8%) Query: 443 NKRKMEIEVMQ--LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 +RK ++ Q L +I+E +SD I +G I++ NRA ++FGY ++L P Sbjct: 332 RQRKQQVVAGQARLATIVENSSDAIIGEALDGRIITWNRAAEQMFGYDEHEVLGCPLAPL 391 Query: 501 LEQNTPSVMNHYLTEILSLDLRQ----TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 L P + H ++L R TLE L K +L+ + I + + L Sbjct: 392 L---VPPDLVHEDEQLLERVARGERGPTLETRRL--HKNGQLIDVTITCSFIRETDGTIL 446 Query: 557 ----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 MHDI++ K+ + L E++ S ++ L+RV+ ++ L A Sbjct: 447 GAAKMMHDITDRKRVERYLMEFNAQLEQQVSERTAELSRVAGLLQGVLDA 496 >gi|254786633|ref|YP_003074062.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae T7901] gi|237684702|gb|ACR11966.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae T7901] Length = 691 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 87/263 (33%), Positives = 147/263 (55%), Gaps = 14/263 (5%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KNQ 613 S T D++E K + ++ AK++AE+ + KSDFL+ +SHE+RTPL +I+GF+++ ++ Sbjct: 278 SGTNMDVTEIKLAEERVLKAKEVAEEANRAKSDFLSSMSHELRTPLNSILGFAQLCDADK 337 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 P E I R+G +L +V D+LD++KIES +M EPV+ ++EA+S Sbjct: 338 SLLPEQRANIAE----IRRAGEHLLQLVGDVLDLAKIESRRMGFSLEPVTPARLLAEAVS 393 Query: 674 LVQLYANEKRILIRTSFANNIP--RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 +Q A + I + A + ++AD +KQ+ LN+LSNAI + GG + + Sbjct: 394 SLQSQAEMRGISVTLEPACDESDVDVVADAVRLKQVFLNLLSNAIKYNVDGGSVHVGCAR 453 Query: 732 TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 EE LR V+D+G G+ + ++ +PF ++ N EG+G+GL + K +V+ M Sbjct: 454 L--EEAFLRVTVKDSGRGIAEHLQKQMYQPFNRLGNEAS-SIEGSGVGLVITKQLVE-QM 509 Query: 790 GKFYIFSTPAK-GTLIEIIFPLY 811 G FS+ G+ + P+Y Sbjct: 510 GGLIGFSSKENVGSEFWVDMPVY 532 >gi|152976970|ref|YP_001376487.1| multi-sensor signal transduction histidine kinase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025722|gb|ABS23492.1| multi-sensor signal transduction histidine kinase [Bacillus cytotoxicus NVH 391-98] Length = 585 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 100/371 (26%), Positives = 184/371 (49%), Gaps = 48/371 (12%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L +++E G+ +I+ G I NR+ ++F E+ +L++ +H Sbjct: 245 RLHTLIENMGSGMILIDSRGYISLVNRSYKEIFHVTDEE--------YLDRLYYESFHH- 295 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCYSLTMH 559 TEI+ L +E+I + K K + L + I++ F L H Sbjct: 296 -TEIIEL-----VEEIFMTEVKVRKQVLLPLDIERKHFEVYGAPIIGTNHEWKGIVLVFH 349 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K KL +K DFLA VSHE++TP+T+I GFSE + + G + Sbjct: 350 DITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD---GAMK 392 Query: 620 NPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N ++ E + + I + + D++ DLLD+SKIE L+ V + + + + ++ Sbjct: 393 NQKFCEHFLHIILKESERMQDLIEDLLDLSKIEQQGFKLNMGNVDIKDLLEDIKMVLDKK 452 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A +K I+++ ++ ++ D +KQI +N++ NAI +TP GG + +S + Sbjct: 453 AQDKEIVLQMDAMQHVS-VIGDSSRLKQIFINLVHNAIIYTPVGGTVSVSL-FEDEQNAY 510 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 ++V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G + S Sbjct: 511 VQVADTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGMITVESKV 570 Query: 799 AKGTLIEIIFP 809 +GT+ + P Sbjct: 571 GEGTMFTVALP 581 >gi|282897504|ref|ZP_06305505.1| Histidine kinase, HAMP region protein [Raphidiopsis brookii D9] gi|281197599|gb|EFA72494.1| Histidine kinase, HAMP region protein [Raphidiopsis brookii D9] Length = 647 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/257 (32%), Positives = 136/257 (52%), Gaps = 8/257 (3%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + W +E L A K A+ ++ KS FLA SHE+R PL II ++++ Sbjct: 389 LKAWTEE---LEMAWKEAKSANTVKSQFLANTSHELRNPLNIIINCVRLVRDGLCD--DK 443 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 +E+ D + +L I+NDLLDISKIE+GK+++ P+ L + + E I+L + Sbjct: 444 EEELEFLKKADDTAIHLLGIINDLLDISKIEAGKLSVVMIPLELRQLLLEVINLQSVNVE 503 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--VI 738 +K + ++ I I D +KQ+ +N++ NA FT G I + T N + V+ Sbjct: 504 KKGLQLKCEILEQIIPIKGDRIKLKQVLINVIGNATKFTEEGSITISTKTIQQNSKLYVV 563 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V DTG+G+ + K +PF + S + EGTGLGL +++ +++ GK + S Sbjct: 564 ISVVDTGIGIDPQQQHKLFRPFVMVDGSTTRKFEGTGLGLAISRNLIELMGGKISLESLG 623 Query: 799 A-KGTLIEIIFPLYDTS 814 +GT ++II PL D S Sbjct: 624 LNRGTTVKIILPLIDIS 640 >gi|167464857|ref|ZP_02329946.1| two-component sensor histidine kinase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 582 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 95/368 (25%), Positives = 181/368 (49%), Gaps = 33/368 (8%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L +LE G+ ++++ G I NR+ + GY ++L K + L+ Sbjct: 236 RLQGVLENMVSGVMMVDQRGTITLVNRSAEDILGYSSHELLNKSY---LDAGFQLEFTAL 292 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNK 570 L + + R E++ L +E++L + + I++ + +HDI+ ++ Sbjct: 293 LADAIETHTR-VREELML-HFPQEQILEVHVSPIVQGDGQRKGVLVVLHDITAVRR---- 346 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANY 629 ++I +S+F+A VSHE++TP+ A+ GF+E + G L + + Sbjct: 347 ---LERI-------RSEFVANVSHELKTPVAAVKGFAETLMA---GALEDKEMARSFLQI 393 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I + + ++ D+L++SKIES ++ L F PV ++ V +I +++ A +K I + + Sbjct: 394 IYDESDRLNRLIGDILELSKIESKRIPLQFSPVDVESIVENSIQMMKAEAEKKHITLESC 453 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-------SNEEVILRVR 742 N + I AD ++QI +N+LSN I +TP GG++ I NE + +R+ Sbjct: 454 VENELY-IEADEDRLRQILINLLSNGISYTPEGGRVSIGVEFVPSLDDNPDNERMRIRIS 512 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ +L + + F ++ ++ GTGLGL + K + + + G + S KGT Sbjct: 513 DTGIGIPEKDLPRIFERFYRVDKARSRSSGGTGLGLSIVKHLTELHHGTISVESEAGKGT 572 Query: 803 LIEIIFPL 810 I P+ Sbjct: 573 TFNIELPV 580 >gi|13472804|ref|NP_104371.1| two-component sensor/response regulator hybrid [Mesorhizobium loti MAFF303099] gi|14023551|dbj|BAB50157.1| two-component sensor/response regulator hybrid [Mesorhizobium loti MAFF303099] Length = 760 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/267 (30%), Positives = 139/267 (52%), Gaps = 11/267 (4%) Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 ++ + DI+ K+ ++ L A++ AE S KS FLA VSHEIRTP+ I+G + ++ Sbjct: 219 AASHRAIARDITARKRAESSLITARERAEYASQAKSRFLATVSHEIRTPMNGIMGMARLL 278 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + +P Y I S + +L ++ DLLD SKIE+G+ + +P+S+ E Sbjct: 279 ADTSL----SPEQQTYVGAISTSASALLALIEDLLDYSKIEAGRFDPEPQPMSVREIADN 334 Query: 671 AISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 I L+ A K I + ++P+++ AD V+Q+ LN++ NAI FT GG +++S Sbjct: 335 IIELLAARAFAKDIGLGCHVEPDVPQLITADPGRVRQVLLNLIGNAIKFTDGGG-VLVSI 393 Query: 730 THTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 +E + + DTG G+ ++E+ + F Q + G GLGL ++K +V Sbjct: 394 ARARSETSDRICFTITDTGPGLREEDMERIFEEFEQADGTSTRAHGGAGLGLAISKRLVA 453 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDT 813 A G + S +G+ E +F + T Sbjct: 454 AMGGTISVSSRLGQGS--EFVFEIPAT 478 >gi|302036187|ref|YP_003796509.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii] gi|300604251|emb|CBK40583.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii] Length = 945 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/242 (32%), Positives = 126/242 (52%), Gaps = 8/242 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ +L AK+ AE + KS FLA +SHEIRTP+ ++G +E++ + + Sbjct: 258 RERTTELHQAKEAAEAANRAKSQFLANMSHEIRTPMNGVLGMTELLLSTAL----TQKQR 313 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + RSG ++DI+N++LD SKIE+GK+ L L + V +A+ L A K + Sbjct: 314 SLTETLHRSGTGLMDIINEILDFSKIEAGKLKLERIEFGLRQTVEDAVDLFAETAGRKHL 373 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILR 740 + +IP ++ D ++QI LN++ NAI FT SG + + T T+N + R Sbjct: 374 ELTCFVPPDIPDTVIGDPVRLRQILLNLVGNAIKFTQSGDVAVTLELVTPTTTNLTLKFR 433 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 +RDTGVG+ + + F Q NS + GTGLGL + K + G + S + Sbjct: 434 IRDTGVGIPEATQARLFQAFSQADNSTTRKFGGTGLGLAIVKQLALLMGGDVGVDSVSGQ 493 Query: 801 GT 802 G+ Sbjct: 494 GS 495 >gi|261415659|ref|YP_003249342.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372115|gb|ACX74860.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326073|gb|ADL25274.1| sensory box histidine kinase/response regulator [Fibrobacter succinogenes subsp. succinogenes S85] Length = 1260 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/256 (33%), Positives = 140/256 (54%), Gaps = 18/256 (7%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A +A+ K+ FL+ +SH+IRTP+ AI+GF+++ + ++Y + + Sbjct: 873 LQKALSMAQSSDRAKTTFLSNMSHDIRTPMNAIVGFTDLAMAH---IDEKDQVLDYLHKL 929 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 +S N +L ++ND+LD+S+IESGKM L + L E V+ +VQ N K ++ Sbjct: 930 GQSSNHLLSLINDVLDMSRIESGKMVLSEKNEDLVEIVNALKDIVQADVNAKNLVFDVEM 989 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI--------LRVR 742 + I+ D + Q+ LN+LSNAI +T +GG I H S +E + R+R Sbjct: 990 DISESGIVCDKLRLNQVLLNVLSNAIKYTQAGGSI---HMHISEKESMKPDSSMYEFRIR 1046 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRG-EGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D G+GM L+ +PF + NS + G +GTGLG+ + K +V+ G+ IFS KG Sbjct: 1047 DNGMGMNPDFLKTIYEPFTR-ANSSTVSGIQGTGLGMSITKNIVEMMGGRIEIFSEENKG 1105 Query: 802 T--LIEIIFPLYDTSH 815 T +I++ F L+ ++ Sbjct: 1106 TEVVIDLDFKLHGSAR 1121 >gi|183219905|ref|YP_001837901.1| putative two-component sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167778327|gb|ABZ96625.1| Putative two-component sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 596 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 129/244 (52%), Gaps = 7/244 (2%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + +L + E S KS+FLA +SHEIRTPL +IG ++++ F + Y Sbjct: 276 QKRLQELYEKTEMASRAKSEFLASMSHEIRTPLNGVIGITQIL----FETDLDAEQKSYL 331 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I +G +L+I+ND+LD SKI++GK+ + P L V E L + AN K++ + Sbjct: 332 KTIADAGKALLNILNDILDFSKIDAGKLTIQKTPFHLANLVREIFDLFAIEANTKQLEFK 391 Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 ++P I++D ++QI N++ NAI FT +G +I + ++ +++D+G+ Sbjct: 392 FEINPDVPEVIVSDPSRIRQILFNLIGNAIKFTETG--FVILSIKKEEHSILFQIKDSGI 449 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G++ +L + F Q+ S + GTGLGL +++ +V GK + S G+ Sbjct: 450 GISYEKLTSLFQKFSQVDTSTSRKYGGTGLGLAISERLVGLLEGKIGVESVKGVGSTFWC 509 Query: 807 IFPL 810 FPL Sbjct: 510 SFPL 513 >gi|75910333|ref|YP_324629.1| periplasmic sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704058|gb|ABA23734.1| Periplasmic Sensor Hybrid Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 922 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/254 (32%), Positives = 143/254 (56%), Gaps = 12/254 (4%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 YS T+ + + + +L AK A+ + KS+FLA +SHE+RTPL I+G++++++ Sbjct: 426 YSRTLEE--KVRDRTQELETAKIAADVANQAKSEFLASMSHELRTPLNGILGYAQILERS 483 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 P +E N I + G+ +L ++ND+LD+SKIE+GK+ LH ++ + Sbjct: 484 ENIA---PTVLEGINIIHQCGSHLLTLINDILDLSKIEAGKLELHNTDFDFSYFLTGVVE 540 Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIIST 729 + ++ A +K I ++P+ + AD + ++QI +N+L NAI FT +GG I + Sbjct: 541 MCRIRALQKGISFHYLPDPHLPQAINADEKRLRQIIINLLGNAIKFTETGGVNFTIQVLE 600 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN-SQQIRGEGTGLGLPLAKAMVDAN 788 + ++ +V DTGVGMT +L K PF Q+ + S+Q+ EGTGLGL ++ M + Sbjct: 601 VGANFHKIRFQVEDTGVGMTPEQLTKIFLPFEQVGDKSKQV--EGTGLGLAISCKMAELM 658 Query: 789 MGKFYIFSTPAKGT 802 G+ + S G+ Sbjct: 659 GGQIQVDSILGTGS 672 >gi|330859215|emb|CBX69566.1| signal transduction histidine-protein kinase barA [Yersinia enterocolitica W22703] Length = 976 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ Q P +Y Sbjct: 277 ELGLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTR----QTLKTSLTPTQTDYLQT 332 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RS N +L I+ND+LD SK+E+ K+ L P SL A+ E I L+ A+EK + + Sbjct: 333 IQRSANNLLCIINDVLDFSKLEAEKLILEHIPFSLRGALDEVIILLAHTAHEKGLELTLH 392 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV--ILRVRDTG 745 ++P +++ D ++QI N+L NAI FT G I+++ ++++V ++ + DTG Sbjct: 393 VNKDVPEQVIGDAMRLQQIVTNLLGNAIKFTEQGNIDILVAVRAIASQQVTLVVEIHDTG 452 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++ + + + F Q S R GTGLGL + + +V G S +G+ Sbjct: 453 IGISESQQAQLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVERGS 509 >gi|220910672|ref|YP_002485982.1| histidine kinase [Cyanothece sp. PCC 7425] gi|219867444|gb|ACL47781.1| histidine kinase [Cyanothece sp. PCC 7425] Length = 810 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/239 (33%), Positives = 132/239 (55%), Gaps = 7/239 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L + AE + KS FLA +SHE+RTPL AI+GF++V++ PL + E Sbjct: 336 QLEQKAQEAEAANHAKSAFLAHMSHELRTPLNAILGFAQVMERD---PLLTHQQQESLAI 392 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RSG +L ++ND+L++SKIE+G++ LH L E + + Q A K++ + + Sbjct: 393 INRSGEHLLGLINDVLEMSKIEAGQIVLHPGAFDLHELLQTLRDMFQGRAEAKQLALNVN 452 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--HTSNEEVILRVRDTGV 746 A ++PR +++D ++Q+ +N+LSNA+ FT G + + HT + V DTG Sbjct: 453 LAADLPRYVISDEGKLRQVLINLLSNAVKFTDQGTVTLEAAYQHHTGANYLTFAVADTGR 512 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 G+ E E +PF Q + EGTGLGL +++ VD G+ S +GT+ + Sbjct: 513 GIAPEEQEHLFQPFFQSAAGLKTE-EGTGLGLSISRQFVDLMGGQISANSQLGQGTVFK 570 >gi|218247510|ref|YP_002372881.1| histidine kinase [Cyanothece sp. PCC 8801] gi|218167988|gb|ACK66725.1| histidine kinase [Cyanothece sp. PCC 8801] Length = 626 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/265 (30%), Positives = 143/265 (53%), Gaps = 12/265 (4%) Query: 555 SLTMHDISE----WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 ++ + D+ E W +E + A + A+ + KS+FLA SHE+RTPL IIG ++ Sbjct: 363 AIAIQDMVERLQAWGEE---VVSAWQEAQNANRLKSEFLATTSHELRTPLNGIIGCLHIL 419 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 K +E+ +++ +L I++D+LD++KIE+GK+++ EPV L +SE Sbjct: 420 KEGYCD--SKEEELEFLQQAEQAAVHLLGIIDDVLDLAKIEAGKLSVSLEPVDLTSLLSE 477 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 I+L + +KR+ + T + + AD + +KQ+ LN+L NAI FT G I + Sbjct: 478 VINLQTITLQKKRLTLMTKINPHSIIVQADPKKLKQVILNVLGNAIKFTEKGNITIKTHI 537 Query: 731 HTSN--EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 +N ++V + V+DTG+G+ + +K +PF + S + GTGLGL +++ ++ Sbjct: 538 EENNHQKQVCITVKDTGIGIDIKQQDKLFRPFVMVDGSTTRKYSGTGLGLAISRNLMQLM 597 Query: 789 MGKFYIFSTPAK-GTLIEIIFPLYD 812 G + S GT ++I P D Sbjct: 598 GGNITLSSEGIDLGTTVKICLPYSD 622 >gi|257062029|ref|YP_003139917.1| CBS sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] gi|256592195|gb|ACV03082.1| CBS sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] Length = 851 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/259 (29%), Positives = 140/259 (54%), Gaps = 5/259 (1%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y + D++E ++ +L+ + + K +FLA +SHE+++PLTA++G S ++ Q Sbjct: 321 YLVLATDVTEQQRLCQELAAKNADLVQLNRLKDEFLACISHELKSPLTAVVGLSSLLGEQ 380 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI- 672 + G L N R + YA I RSG ++ +VNDLLD++++E+G++ L F P+++ A Sbjct: 381 KVGEL-NTRQVHYAELIYRSGRQLMTLVNDLLDLTRLETGQLKLSFLPLNIKNICERAYH 439 Query: 673 SLVQLYANEKRI--LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 S+++ Y ++ + I + ILAD + Q+ +++L NA+ FT + G++ I + Sbjct: 440 SIIEKYQSKTDVPLSINLDIEPALKFILADELRLHQMLVHLLDNAMKFTQAEGKVGIRVS 499 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 N + V DTG+G+ + F Q+ N + EGTGLGL L + + A+ G Sbjct: 500 RWEN-WIAFTVWDTGIGIPEESQHLIFQKFQQLENPLTRKFEGTGLGLVLTQRLARAHGG 558 Query: 791 KFYIFSTPAKGTLIEIIFP 809 S +G+ ++ P Sbjct: 559 DISFISKEGQGSQFTLLLP 577 >gi|167462457|ref|ZP_02327546.1| two-component hybrid sensor and regulator [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381877|ref|ZP_08055831.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154265|gb|EFX46587.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 365 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 131/238 (55%), Gaps = 10/238 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK+ AE + KS+F+A +SHEIRTP+ ++ ++++ EY Sbjct: 116 ELLMAKEAAEAANRAKSNFIAVMSHEIRTPMNGVMAMADLLLETELTEEQR----EYTET 171 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I +SGN +L I+ND+LD +K+ES K+ L E L++ + E I L + +K +++ Sbjct: 172 ISKSGNALLTIINDILDFTKMESSKIELEEEIFHLEQLIGECIDLFLVECRKKNLVLERR 231 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDT 744 +IP+ ++ D ++QI +N+LSNA+ FT G++ + S E E+ +V DT Sbjct: 232 INQDIPQYVVGDATRLRQILINLLSNAVKFTEK-GKVSLEVKKRSEEKDGVELEFKVSDT 290 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G+ ++++ K F QI S + GTGLGL + K +++ G + S +GT Sbjct: 291 GIGIPKNKMDRLFKSFSQIDFSMTRKYGGTGLGLVICKNLIELMSGTITVTSVEREGT 348 >gi|149374705|ref|ZP_01892479.1| Signal transduction histidine kinase [Marinobacter algicola DG893] gi|149361408|gb|EDM49858.1| Signal transduction histidine kinase [Marinobacter algicola DG893] Length = 962 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/240 (35%), Positives = 138/240 (57%), Gaps = 12/240 (5%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYAN 628 +L A+K A + S KS+FLA +SHEIRTPL IIGF+E++ PL PR ++ + Sbjct: 277 ELDFARKEALEASRIKSEFLANMSHEIRTPLNGIIGFTELLLK---SPL--PRQQRDHLS 331 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +S ++L I+ND+LD SKIE+GK+ L P L + V E + ++ A+ K + + Sbjct: 332 TIRKSSEILLTIINDILDFSKIEAGKLILDRIPFQLRDIVEEVMVMLAPAAHSKNLDLVP 391 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILR--VR 742 N++P I+ D VKQ+ N+++NAI FT +G ++ ++ ++E + LR + Sbjct: 392 LVYNDVPDNIMGDPLRVKQVITNLVNNAIKFTQTGEVVLRASLEEEDKESNRITLRLSIT 451 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D+GVG++ + + F Q S + GTGLGL ++K +V+ GK + S KG+ Sbjct: 452 DSGVGLSRAQQQSLFNAFSQADASTARQYGGTGLGLAISKRLVEEMGGKIGLESELGKGS 511 >gi|85712454|ref|ZP_01043503.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains) [Idiomarina baltica OS145] gi|85693732|gb|EAQ31681.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains) [Idiomarina baltica OS145] Length = 868 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/266 (31%), Positives = 140/266 (52%), Gaps = 13/266 (4%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +DIS K ++ AK+ AE+ + K +FLA +SHEIRTP+ AI+G + + + Sbjct: 182 YDISSIKSVAEQMEQAKESAEQANVAKGEFLANMSHEIRTPINAIVGMANLCLKTQLSE- 240 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 RYI+ ID S +L ++ND+LD SKI++GK+++ P L + ++ + Sbjct: 241 KQKRYIK---VIDSSSQALLGVINDILDFSKIDAGKLSIERIPFDLQDVLTSLADMFAYK 297 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE 736 A +K + + NIP R+ D + Q+ +N++SNAI FT G + ++ + ++ Sbjct: 298 AYDKDLEFIINLPANIPTRLFGDPLRLNQVLVNLVSNAIKFTEDGEINVAVTLLDKNTDK 357 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V LR V DTG+GM + K F Q +S + GTGLGL +++ ++ G + Sbjct: 358 VWLRISVTDTGIGMDEEQRANLFKAFTQADSSTTRKYGGTGLGLAISRRLIQLMGGDIGV 417 Query: 795 FSTPAKGT--LIEIIFPL---YDTSH 815 S +G+ IE+ P+ D SH Sbjct: 418 TSGVGQGSTFYIELTLPMQPEQDDSH 443 >gi|291287330|ref|YP_003504146.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] gi|290884490|gb|ADD68190.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] Length = 993 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 128/230 (55%), Gaps = 9/230 (3%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE+ + KS FLA +SHEIRTPL +I+GFS+++ N EYA I +S + Sbjct: 377 AEEANIAKSAFLANMSHEIRTPLNSIMGFSDLLCASDI----NANDKEYALTISQSARSL 432 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696 L I+ND+LDISKIESGK+ L E L+ + I ++ + A+EK I NIP + Sbjct: 433 LSIINDILDISKIESGKVELFKEEFDLNLMLDYVIKMISVRASEKDINFLFYCDTNIPAK 492 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIIST--THTSNEEVILR--VRDTGVGMTNYE 752 ++ D ++Q+ +N+L NA+ FT GG+I +S +++ V +R V DTG+G++ Sbjct: 493 LIGDSERIQQVLMNLLGNAVKFTEKGGEIRLSVFMADKADDTVDVRFEVHDTGIGISEAA 552 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + +PF Q + GTGLGL + ++ + ++S+ G+ Sbjct: 553 VAHIFEPFHQADAGINRKYGGTGLGLTICNKILHIMESEIRVYSSEGVGS 602 >gi|16127201|ref|NP_421765.1| sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] gi|221236002|ref|YP_002518439.1| GAF/PAS-family sensor histidine kinase [Caulobacter crescentus NA1000] gi|13424601|gb|AAK24933.1| sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] gi|220965175|gb|ACL96531.1| GAF/PAS-family sensor histidine kinase [Caulobacter crescentus NA1000] Length = 713 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 112/402 (27%), Positives = 186/402 (46%), Gaps = 47/402 (11%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK----------- 495 + E +Q +I A +G+ + +R IIL N A + L G + +L K Sbjct: 193 LAAEGVQFRTIFAAMREGVVLQDRSSIILRHNPAAAALLGLTHDQLLGKSSVDDDWRIVD 252 Query: 496 -----------PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 P V L P V+N +L + LR G+ + + SL I Sbjct: 253 AAGAPLPVEAQPSMVCLATGEP-VLNF----VLGVHLRD-------GALRWLSVNSLPIF 300 Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 K + + D++E ++ + +L A ++AE+ S KS F+A VSHEIRTPL +I Sbjct: 301 DKIGEPPNLTVTSFIDVTELRERETELRDALELAERASRVKSQFVANVSHEIRTPLNGVI 360 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 + ++ R E I SG + I++ LLD++KIE+ +M L L Sbjct: 361 ALASALRQSAL----TDRQREMVEIIVESGTTLESILSALLDLAKIEAERMELEIVSFGL 416 Query: 665 DEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 ++ V + L ++ A+ K + S A R D + ++QI N+L+NAI FT G Sbjct: 417 EDLVRSSTDLFKIKADNKGLGFDVSVIAPPGARYRGDAQKIRQILWNLLANAIKFT-DAG 475 Query: 724 QIIISTT----HTSNEEVILRVRDTGVGMTNYELEKAM-KPFGQIPNSQQIRGEGTGLGL 778 +I +S T + + +++ VRDTGVG++ E+E + +PF Q S R GTGLGL Sbjct: 476 EIAVSVTVEGADPAAQTLLIEVRDTGVGLSP-EMEHVLFEPFIQGDASATRRFGGTGLGL 534 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 + +A+ G + +G++ + P+ T+ P + Sbjct: 535 TICRALARMMGGDIEALARAERGSVFRVHVPV-STAEPEASV 575 >gi|254467050|ref|ZP_05080461.1| sensor histidine kinase/response regulator [Rhodobacterales bacterium Y4I] gi|206687958|gb|EDZ48440.1| sensor histidine kinase/response regulator [Rhodobacterales bacterium Y4I] Length = 764 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 128/241 (53%), Gaps = 9/241 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTP+ ++G +E++ + + YA+ I SG +L I+ND+ Sbjct: 216 KSAFLANMSHEIRTPMNGVVGMAELLCDTEL----DEEQRLYASTIKNSGEALLVIINDV 271 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703 LD SKIE+ K+ LH EP L+ + E + L+Q A +K I + + +P R D Sbjct: 272 LDYSKIEADKLELHPEPFDLERCLHEVVMLLQPTARDKGIALLVDYDLFLPTRFTGDPGR 331 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKP 759 ++Q+ N+ NA+ FT G + T TS ++ V + + DTG+G+ ++ Sbjct: 332 IRQVLTNLAGNAVKFTKEGHVTLRVTGITSPDDKQCAVHVNIEDTGIGIPQEKISHIFGE 391 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 F Q+ + + + EGTGLGL ++K +++ G+ ++ S KG+ PL + P Sbjct: 392 FNQVEDERNRQFEGTGLGLAISKRLIEMMGGEIWVDSEEGKGSCFGFRLPLPVEAGPEAA 451 Query: 820 I 820 + Sbjct: 452 V 452 >gi|171912499|ref|ZP_02927969.1| PAS/PAC Sensor Hybrid Histidine Kinase [Verrucomicrobium spinosum DSM 4136] Length = 684 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/263 (31%), Positives = 144/263 (54%), Gaps = 18/263 (6%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF-SEVIKNQRF 615 + D++E K+ + +L A+ A S K +FLAR+SHE+RTPL ++ SE N Sbjct: 285 VLTDLTERKRAEQELKEARDQALAASGAKDEFLARLSHELRTPLNPVLLLASEAADNPHL 344 Query: 616 GPLGNPRYIEYANY--IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 P + A++ I ++ +L +++DLLD+++I GK++L V L + V +A + Sbjct: 345 -----PDEVR-ADFHTIRKNVDLEARLIDDLLDVTRISRGKLSLELRRVDLHDVVRDAFT 398 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 V+ A++KR+ ++ S P +L D ++QI N+L+NA+ FTP GG+I+++ T Sbjct: 399 SVKGEADKKRLRLQLSLDGESPYVLGDAVRLQQIFWNLLNNAVKFTPDGGRIVVA-TQIK 457 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQ----IPNSQQIRGEGTGLGLPLAKAMVDANM 789 V + V+D G+G++ EL F Q PN G G GLGL +++ +V+ + Sbjct: 458 EAWVTVEVQDDGIGLSKEELTSVFDAFAQGEHSWPNGSHQFG-GLGLGLAISRMLVEMHS 516 Query: 790 GKFYIFSTPAK--GTLIEIIFPL 810 G+ S+P + G + + PL Sbjct: 517 GEISA-SSPGRDAGAIFRVRIPL 538 >gi|149376977|ref|ZP_01894731.1| Signal transduction histidine kinase [Marinobacter algicola DG893] gi|149358754|gb|EDM47224.1| Signal transduction histidine kinase [Marinobacter algicola DG893] Length = 935 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/267 (29%), Positives = 137/267 (51%), Gaps = 24/267 (8%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + K + + AE S KS+FLA +SHEIRTP+ A+IG+S+++ N + +P+ Sbjct: 562 ELRAAKLEAERLAREAEAASLTKSEFLANMSHEIRTPMNAVIGYSDLLSNT----VKDPQ 617 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y + I +L ++ND+LD+S+IE+GKM L + VS+ +S+ + L A E+ Sbjct: 618 QRNYLDAIRAGSRSLLMLINDILDLSRIEAGKMRLEYSAVSVRRLLSDVRHIFDLRATEQ 677 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----------- 730 I + S + +P ++ D ++Q+ N++ NAI FT GG + +T Sbjct: 678 GISLEVSVDSKMPAAMMLDETRLRQVLFNLVGNAIKFTHEGGVTVRATATPRKSSEKQPV 737 Query: 731 -HTSNE-------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 T++E +++ V DTG+G+ + E+ F Q R GTGLGL +++ Sbjct: 738 EETASEVDRRCFYRLVVTVSDTGIGIPPDQQEQIFDAFEQQEGQNTRRYGGTGLGLAISR 797 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 +V G+ + S P G+ + P Sbjct: 798 KLVRMMGGELQVESEPGAGSTFTVKLP 824 >gi|50122492|ref|YP_051659.1| hybrid sensory histidine kinase BarA [Pectobacterium atrosepticum SCRI1043] gi|49613018|emb|CAG76469.1| two-component sensor kinase and response regulator [Pectobacterium atrosepticum SCRI1043] Length = 933 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 90/254 (35%), Positives = 137/254 (53%), Gaps = 12/254 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + +K PL N +Y Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKT----PL-NTTQTDYLL 332 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS N +L+I+ND+LD SK+E+GK+ L P SL + + + L+ A+EK + + Sbjct: 333 TIERSANNLLNIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTL 392 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDT 744 S N++P + + D ++QI N+L NAI FT G I + + +V L V RDT Sbjct: 393 SIQNDVPEQFVGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLEVQIRDT 452 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT-- 802 G+G+ + + + F Q S R GTGLGL + + +V G S KG+ Sbjct: 453 GIGIAELQQSQLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGSTF 512 Query: 803 LIEIIFPLYDTSHP 816 I PL + P Sbjct: 513 WFHITLPLNPHAMP 526 >gi|88798530|ref|ZP_01114114.1| probable two-component sensor [Reinekea sp. MED297] gi|88778630|gb|EAR09821.1| probable two-component sensor [Reinekea sp. MED297] Length = 767 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 144/256 (56%), Gaps = 16/256 (6%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H I ++E+ K + ++ +S FLA++SHEIRTPL ++G +++ + Sbjct: 380 HRIRVLREERQK-------QQLKAEAQSYFLAQISHEIRTPLNGVLGTVDLLDQTQLDE- 431 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 +YIE I SG +L++VND+LD S+IE+GKM + E + + + + L + Sbjct: 432 EQKKYIET---IQSSGKSLLNLVNDVLDYSRIEAGKMTVVEEQIHIQDLFRHQVELFRAQ 488 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SN 734 AN+K + + + N+P IL+D + ++QIA N++SNAI FT GQ+++S + T + Sbjct: 489 ANQKSLNFKLTIDPNVPEWILSDAQRIRQIATNLISNAIKFT-DQGQVVVSLSSTRRNGH 547 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + ++VRDTG+G+ ++E+ + Q+ ++ GTGLGL +++ +VD G + Sbjct: 548 PYLSIQVRDTGIGIASHEIAHLFDAYQQVDVGKRRVYGGTGLGLAISQQLVDLLGGTITV 607 Query: 795 FSTPAKGTLIEIIFPL 810 S +G+ + PL Sbjct: 608 QSQQNQGSEFTVQLPL 623 >gi|257061154|ref|YP_003139042.1| histidine kinase [Cyanothece sp. PCC 8802] gi|256591320|gb|ACV02207.1| histidine kinase [Cyanothece sp. PCC 8802] Length = 626 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/265 (30%), Positives = 143/265 (53%), Gaps = 12/265 (4%) Query: 555 SLTMHDISE----WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 ++ + D+ E W +E + A + A+ + KS+FLA SHE+RTPL IIG ++ Sbjct: 363 AIAIQDMVERLQAWGEE---VVSAWQEAQNANRLKSEFLATTSHELRTPLNGIIGCLHIL 419 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 K +E+ +++ +L I++D+LD++KIE+GK+++ EPV L +SE Sbjct: 420 KEGYCD--SKEEELEFLQQAEQAAVHLLGIIDDVLDLAKIEAGKLSVSLEPVDLTSLLSE 477 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 I+L + +KR+ + T + + AD + +KQ+ LN+L NAI FT G I + Sbjct: 478 VINLQTITLQKKRLTLMTKINPHSIIVQADPKKLKQVILNVLGNAIKFTEKGNITIKTHI 537 Query: 731 HTSN--EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 +N ++V + V+DTG+G+ + +K +PF + S + GTGLGL +++ ++ Sbjct: 538 EENNHQKQVCITVKDTGIGIDIKQQDKLFRPFVMVDGSTTRKYSGTGLGLAISRNLMQLM 597 Query: 789 MGKFYIFSTPAK-GTLIEIIFPLYD 812 G + S GT ++I P D Sbjct: 598 GGNITLSSEGIDLGTTVKICLPYSD 622 >gi|171909890|ref|ZP_02925360.1| two-component hybrid sensor and regulator [Verrucomicrobium spinosum DSM 4136] Length = 836 Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/237 (34%), Positives = 128/237 (54%), Gaps = 12/237 (5%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK+ AE + K+DFLA +SHEIRTP+ IIG + ++ + PL N + +E I S Sbjct: 300 AKRQAESGMAAKADFLANMSHEIRTPMNGIIGTTSLLLDS---PLDNEQ-MELVRMIRTS 355 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +L ++ND+LD SK+ES +M L PVSL+ E + + A EK + + + N Sbjct: 356 GESLLHLINDILDFSKLESARMVLERLPVSLERLFHETMGIFAFKAAEKGVELNYHVSEN 415 Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSG-----GQIIISTTHTSNEEVILR--VRDTG 745 IPR I D + +KQ+ +N+++NA+ FT G Q I+ +E +L+ VRDTG Sbjct: 416 IPRHITGDFQRLKQVLVNLVANAVKFTERGEILVVAQPIVRKLPDGSEYTLLQVSVRDTG 475 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ +L + F Q S + GTGLGL + + + G+ + S G+ Sbjct: 476 IGIAKDKLPLLFQAFTQADTSTTRKYGGTGLGLAICRKLCRLMGGEISVTSELGGGS 532 >gi|291086239|ref|ZP_06571413.1| sensor protein GacS [Citrobacter youngae ATCC 29220] gi|291068626|gb|EFE06735.1| sensor protein GacS [Citrobacter youngae ATCC 29220] Length = 811 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 132/237 (55%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + N ++ N Sbjct: 171 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTEL----NTTQRDHLNT 226 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + + ++L+ +++K + + + Sbjct: 227 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLN 286 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 N++P ++ D ++Q+ N++ NAI FT G I++ SN +V + V RDTG Sbjct: 287 IKNDVPDNVIGDPLRLQQVITNLVGNAIKFTEGGNIDILVEKRALSNTKVQIEVQIRDTG 346 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 347 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 403 >gi|283852097|ref|ZP_06369371.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283572487|gb|EFC20473.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 1340 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 103/389 (26%), Positives = 189/389 (48%), Gaps = 21/389 (5%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R+ +R + E L ++L + DGI++++ + +++ NRA+ L+ E + RK V+ Sbjct: 681 RVGER-LRHEARFLETVLSSIQDGISVLSPDLTVVTVNRAMRALYIDSNEPVGRKCHEVY 739 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTL-EKITLGS-TKEEKLLSLRIIIKKLPFSSCYSLTM 558 P L + S L +L ++ LG T +L + + + + Sbjct: 740 QGLGMPCQDCPSLRAMASGKLAMSLVKRCGLGGETGWLELFCFPLFDDGGAVTGVVEI-V 798 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++ K+ + +L+ A + AE S K FLA +SHEIRTPL A++G+ +++ R Sbjct: 799 RDVTAGKKLEAELAAALERAEAGSQAKGAFLANMSHEIRTPLNAVLGYVQLMLRDRL--- 855 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 PR E ++ S +L ++ND+LD SKIE+G+M L E L ++ + ++ Sbjct: 856 -EPRQRERLAVVEESAATLLSLINDILDYSKIEAGRMELKNESFDLPACLAAVVKEQEVL 914 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--- 734 A K + + + +PR + D ++Q+ N+LSNA+ +T + G + ++ + T Sbjct: 915 ARNKGLDLTLAMGPEVPRDVRGDGLRLRQVLRNLLSNAVKYTEA-GSVAVTVSRTGELPG 973 Query: 735 -----EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 ILR V DTGVG+ + F Q+ + R GTGLGL + + + Sbjct: 974 PAGEAPRQILRFAVADTGVGIAEEQQAAIFDSFTQVDDGLTRRQAGTGLGLAICRRLAGL 1033 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 G ++ S P +G++ + P ++ + P Sbjct: 1034 MGGGVFVESVPGRGSVFWLECP-FEVAEP 1061 >gi|291537853|emb|CBL10964.1| Signal transduction histidine kinase [Roseburia intestinalis XB6B4] Length = 855 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/259 (32%), Positives = 136/259 (52%), Gaps = 14/259 (5%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + KL + + AE+ + K+DFL R+SH+IRTP+ I G ++ + +GNP+ E Sbjct: 451 QKKLEKSVEQAEQANIAKTDFLRRMSHDIRTPINGIRGMVDICRYY----IGNPKKQEEC 506 Query: 628 -NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + I S ++++VND+LD++K+ESG++ L +P S+ E + E ++V + A E+ I + Sbjct: 507 LDKILLSSTFLMELVNDVLDMNKLESGQIKLEEKPFSISEILKEVETVVGMAATEQGITL 566 Query: 687 RTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--SNEEVILR--V 741 N +L V+QI NI SNA+ + G++I+ NE+ + Sbjct: 567 TVKKGEINHENLLGSSLHVRQILQNITSNAVKYNKPNGKVILECRELPPKNEKAVFEFVC 626 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D G+GM+ E A +PF Q +S + GTGLGL + K +V+ G + S P KG Sbjct: 627 TDNGIGMSPEFQEHAFEPFVQENSSARTSYTGTGLGLAIVKKLVEQMEGTIHFVSEPGKG 686 Query: 802 TLIEIIFPLYDTSHPHDCI 820 T ++ P P D I Sbjct: 687 TRFTLVIPFL----PDDSI 701 >gi|270263998|ref|ZP_06192266.1| hypothetical protein SOD_f02120 [Serratia odorifera 4Rx13] gi|270042191|gb|EFA15287.1| hypothetical protein SOD_f02120 [Serratia odorifera 4Rx13] Length = 908 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/238 (33%), Positives = 134/238 (56%), Gaps = 10/238 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K + + +Y Sbjct: 277 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQMLKTEM-----SVTQTDYLQ 331 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS N +L I+ND+LD SK+E+GK+ L P SL E + E I L+ A+EK + + Sbjct: 332 TIERSANNLLTIINDVLDFSKLEAGKLVLEHIPFSLRETLDEVIVLLAPSAHEKGLELTL 391 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDT 744 N++P +++ D ++QI N+L NAI FT +G ++ + E+ +++ DT Sbjct: 392 DVHNDVPEQVIGDSLRLQQIITNLLGNAIKFTETGNIDIRVELRGLQERQVELEVQIHDT 451 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G++ + + + F Q S R GTGLGL + + +V G S +G+ Sbjct: 452 GIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDICFHSQLNRGS 509 >gi|160934161|ref|ZP_02081548.1| hypothetical protein CLOLEP_03029 [Clostridium leptum DSM 753] gi|156866834|gb|EDO60206.1| hypothetical protein CLOLEP_03029 [Clostridium leptum DSM 753] Length = 947 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 128/230 (55%), Gaps = 10/230 (4%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE S KSDFL+R+SHEIRTP+ AI+G +++ + L I I S + Sbjct: 564 AEAGSRAKSDFLSRMSHEIRTPMNAIVGLADL--TEMIPSLPEKAQINLTK-IKTSSRYL 620 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ND+LD+S+IESGKM L P SL+ + + S++ A + + R Sbjct: 621 LSLINDILDMSRIESGKMELEQNPFSLNVLLCDIESMLTAEAERRELTFRVEKNLQHDVF 680 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYEL 753 + D ++Q+ LN+LSNA FTPSGG + + T S E V+++V DTG+G++ Sbjct: 681 IGDTVRLRQVILNLLSNAFKFTPSGGTVWLRVTEPSFTETTGNVLVQVIDTGIGISEENQ 740 Query: 754 EKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 ++ + F Q+ PN+ + +GTGLGL +++ ++ G+ + S KG+ Sbjct: 741 KRIFRSFEQVGPNATKC--QGTGLGLAISRNIIKLMGGEILVKSELGKGS 788 >gi|310830013|ref|YP_003962370.1| hypothetical protein ELI_4473 [Eubacterium limosum KIST612] gi|308741747|gb|ADO39407.1| hypothetical protein ELI_4473 [Eubacterium limosum KIST612] Length = 803 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/268 (32%), Positives = 143/268 (53%), Gaps = 20/268 (7%) Query: 556 LTMHDISEWKQEKNK----LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 LT D+ + ++E+ + L A +AE+ ++ KSDFL+R+SH+IRTP+ AIIG + + + Sbjct: 391 LTFRDVDDIRKEEERKRAALLDALNLAEQANNAKSDFLSRMSHDIRTPMNAIIGMASIAE 450 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + I + I S + +L ++ND+LD+SKIESGKM++ EP L + E Sbjct: 451 ANIRDTVKTEDCI---HKIQASAHFLLALINDILDMSKIESGKMSIIREPFDLCALLREL 507 Query: 672 ISLVQLYANEKRILIRTSFANNIPRIL-----ADLRSVKQIALNILSNAIHFTPSGGQII 726 ++ A EK F+ +P + D + QI +N+LSNA+ +TP GG+I Sbjct: 508 EVIIDAQAREK----GQQFSVLMPAHMEAEYYGDSLRLNQILMNLLSNAVKYTPDGGKIT 563 Query: 727 --ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 ++ ++ ++R V D G+GM+ L+ +PF Q ++ R EGTGLGL + + Sbjct: 564 LRVNEDRKKGKKSVMRFEVEDNGIGMSEAFLKHIYEPFRQDERKEEKRQEGTGLGLSITR 623 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +V G I S KGT + P Sbjct: 624 NLVHLMGGSISISSELGKGTCFTVELPF 651 >gi|227902982|ref|ZP_04020787.1| histidine kinase [Lactobacillus acidophilus ATCC 4796] gi|227869225|gb|EEJ76646.1| histidine kinase [Lactobacillus acidophilus ATCC 4796] Length = 618 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 100/373 (26%), Positives = 179/373 (47%), Gaps = 41/373 (10%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E +L S+L SDG+ +R G + N ED++ KP L Sbjct: 261 ERRRLDSVLSHMSDGVLATDRHGNVSVVNHMALTFLNAKEEDVINKPIAEVLG------- 313 Query: 510 NHYLTEILSLDLRQTLEKITLG---STKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEW 564 L + S DL + ++I + T++E +L S +I + F S +HD++E Sbjct: 314 ---LKDTSSQDLISSQKEIVITLDEGTRDEMILHASFSLIKRVTGFVSGSVCVLHDVTE- 369 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGNPRY 623 Q+KN+ S + F++ VSHE+RTPLT++ + E + + P P++ Sbjct: 370 -QQKNENSQRQ------------FVSNVSHELRTPLTSLQAYIEALNEGAWKDPEIAPKF 416 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA---- 679 +E +G ++ ++NDLL +S+++ G + E V+L++ V+ ++ + Sbjct: 417 LEVTQ--QETGRMI-RMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDK 473 Query: 680 ---NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 ++K+ I+ N + D + Q+ NI++NAI ++P GG I + T N Sbjct: 474 NKDHKKKYTIKRELGNQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTQNQNH- 532 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 VIL + D G+G+ +L K F ++ ++ GTGLGL +AK +V+A+ G+ + S Sbjct: 533 VILSISDQGLGIPRKDLAKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADS 592 Query: 797 TPAKGTLIEIIFP 809 + KG+ I P Sbjct: 593 SEGKGSTFYISLP 605 >gi|332160479|ref|YP_004297056.1| hybrid sensory histidine kinase BarA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664709|gb|ADZ41353.1| hybrid sensory histidine kinase BarA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 956 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ Q P +Y Sbjct: 277 ELGLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTR----QTLKTSLTPTQTDYLQT 332 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RS N +L I+ND+LD SK+E+ K+ L P SL A+ E I L+ A+EK + + Sbjct: 333 IQRSANNLLCIINDVLDFSKLEAEKLILEHIPFSLRGALDEVIILLAHTAHEKGLELTLH 392 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV--ILRVRDTG 745 ++P +++ D ++QI N+L NAI FT G I+++ ++++V ++ + DTG Sbjct: 393 VNKDVPEQVIGDAMRLQQIVTNLLGNAIKFTEQGNIDILVAVRAIASQQVTLVVEIHDTG 452 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++ + + + F Q S R GTGLGL + + +V G S +G+ Sbjct: 453 IGISESQQAQLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVERGS 509 >gi|332991979|gb|AEF02034.1| histidine kinase response regulator hybrid protein [Alteromonas sp. SN2] Length = 539 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 129/232 (55%), Gaps = 4/232 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ S KSDFL+ +SHEIRTPL AI FS +++ + + + +I +SG +L Sbjct: 168 ERTSQFKSDFLSYISHEIRTPLNAINTFSNLLEGEAKQLSLPTNFTDSLGHISKSGERLL 227 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +IVN +LD+ +IE+GKM + PV + + SL ++ A + ++ + +N+P L Sbjct: 228 EIVNSVLDMKQIEAGKMRVMPRPVGTADFFTHLFSLTRIRAEDGNVIFNSVIDDNVPYSL 287 Query: 699 A-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D Q+ALN+LSNAI +T + + I + ++L ++D G+G++ E +K Sbjct: 288 NFDDTKFGQVALNLLSNAIKYTHANKHVSIRVKYKQG-NLLLAIKDEGIGISEEEQKKLF 346 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 PF ++ N+ Q +GTGLGL + K +V+ G + S +GT + + P Sbjct: 347 APFERMENAHQF--DGTGLGLNITKKLVELMGGSIKLSSKLNEGTHVSVAIP 396 >gi|258622337|ref|ZP_05717362.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus VM573] gi|258585353|gb|EEW10077.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus VM573] Length = 927 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQ-TDYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L I+ND+LD SK+E+GK+ L P E + E ++L A+EK + I Sbjct: 331 TIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITL 390 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDT 744 IPR ++ D ++Q+ N++ N+I FT G + ++VI VRDT Sbjct: 391 KIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDT 450 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTF 510 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 511 WFTLRLHTTELP 522 >gi|304320035|ref|YP_003853678.1| Hybrid sensory histidine kinase [Parvularcula bermudensis HTCC2503] gi|303298938|gb|ADM08537.1| Hybrid sensory histidine kinase [Parvularcula bermudensis HTCC2503] Length = 796 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/235 (34%), Positives = 125/235 (53%), Gaps = 7/235 (2%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A AE S KS FLA +SHEIRTP+ ++G +E++ + + E I Sbjct: 252 LEEAVTKAEAASLAKSAFLANMSHEIRTPMNGVLGMAELLMSTEL----DTYQRELIGTI 307 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG ++ I+ND+LD SKIE+GK +L+ EP +L E + +L+ A EK + + + Sbjct: 308 MSSGTSLVTIINDILDFSKIEAGKFSLNEEPFNLREGIENVATLMAGRAAEKDLELFVRY 367 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VRDTGVG 747 ++P + D ++Q+ N++ NAI FT G +I T S E V LR V DTG+G Sbjct: 368 DPSLPEGVFTDGGRLRQVITNLVGNAIKFTDEGQVLIDVTGAQSGETVDLRISVTDTGIG 427 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + +LE + F Q N+ EGTGLGL + K +++ GK + S +G Sbjct: 428 IPPEKLEAIFEKFEQADNTSSRMYEGTGLGLAICKTIIELMGGKIGVTSELGRGA 482 >gi|308535171|ref|YP_002137349.2| sensor histidine kinase [Geobacter bemidjiensis Bem] gi|308052516|gb|ACH37553.2| LOW QUALITY PROTEIN: sensor histidine kinase [Geobacter bemidjiensis Bem] Length = 554 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/255 (31%), Positives = 133/255 (52%), Gaps = 10/255 (3%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q +L+ A++ +E + K++FLA +SHE+RTPL +G ++ + G + +E Sbjct: 288 QTGERLAVAQRQSEAANRAKTEFLANMSHEMRTPLAGALGMIRLVLDMNIGA-EERQLLE 346 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A RS + +L I+ DLLD S++E+G M +P SL E V A+ +V L A EK + Sbjct: 347 MAK---RSADSLLRIIADLLDFSRLEAGVMTFEDKPFSLKEVVRSAVEVVSLVAEEKELH 403 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH----TSNEEVIL 739 + S +P ++ D ++Q+ +N+L NA+ FT GG ++ I T V Sbjct: 404 LSWSVDGAVPDQLSGDEGRLRQVLVNLLGNAVKFTERGGIEVSIKTLEPLEAQGERYVEF 463 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 VRDTGVG+ +L++ F Q+ +S R GTGLGL L + +V+ G + S Sbjct: 464 YVRDTGVGIPADQLQRIFDRFTQVDSSLTRRHGGTGLGLALTRQIVEKMGGSIWAESVIG 523 Query: 800 KGTLIEIIFPLYDTS 814 G+ P+ ++ Sbjct: 524 SGSTFHFTVPMVPSA 538 >gi|308070734|ref|YP_003872339.1| signal transduction histidine kinase [Paenibacillus polymyxa E681] gi|305860013|gb|ADM71801.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681] Length = 556 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 122/221 (55%), Gaps = 8/221 (3%) Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 ++FLA +SHEIRTP+ +IG +++ EYA+ I RS + ++ ++ND+L Sbjct: 170 TEFLAMMSHEIRTPMNGVIGMIDLLMETEL----QSDQQEYADIIRRSADALVAVINDIL 225 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSV 704 D +K+ESGKM + P L + E SL + N K + + +P +L D+ + Sbjct: 226 DFTKLESGKMEVEEYPFDLVSCIKEVFSLFTVEVNRKNLELVYFLDEQMPPVLYGDMGRL 285 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFG 761 +Q+ +N++SNA+ FT GG + ++ ++ V V+DTG+G+ + ++E+ +PF Sbjct: 286 RQVLINLVSNAVKFTDQGGVYVFASVKEQSDNGLTVEFSVKDTGIGIDSAKVERLFQPFS 345 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 Q+ +S + GTGLGL + K +V+ G + + +G Sbjct: 346 QLDSSMTRKYGGTGLGLAICKTLVNMMGGDIRVDMSGEQGV 386 >gi|83649318|ref|YP_437753.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83637361|gb|ABC33328.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 599 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/284 (29%), Positives = 151/284 (53%), Gaps = 9/284 (3%) Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 E LLS+ + + F S Y L + KQ K + ++ AE S KS FL+ +SHE Sbjct: 178 EVLLSVLAVTVLIGFISLYWL----MYLAKQAKVEADFHRRRAEANSDAKSRFLSNMSHE 233 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 +RTPL A++GF+++++ + + ++ + I ++ +L ++ND++D+SKIESG++ Sbjct: 234 LRTPLNAVMGFAQLMQMESRNL--SREQMQNIDEIYKASEHLLSLINDIMDLSKIESGQL 291 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 ++ EP S+ V+E++S+++ A I + I D + Q+ N L+NA Sbjct: 292 SISIEPCSVQSLVNESVSMIRSMAMMNNISVYEPEVRLDYLIKVDRTRMVQVLTNFLTNA 351 Query: 716 IHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 I + GG + + H S ++ L V D G+G+ + K KPF ++ +Q + EGT Sbjct: 352 IKYNRKGGWVKVELEHESRSGMLCLSVADNGIGIHKKDHHKVFKPFERL--AQDMAIEGT 409 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 G+GL L++ +V G+ S +G+L + FP+ D D Sbjct: 410 GIGLALSQQLVLLMNGQIGFKSKEGQGSLFWVKFPILDVVKAQD 453 >gi|332304964|ref|YP_004432815.1| ATP-binding region ATPase domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172293|gb|AEE21547.1| ATP-binding region ATPase domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 1058 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/253 (33%), Positives = 146/253 (57%), Gaps = 18/253 (7%) Query: 563 EWKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E +E+N +L A+K A S+ KS FLA +SHEIRTPL AI+GFS+ ++ F + Sbjct: 422 ELVEEQNVRLDIARKEAVAASNVKSQFLANMSHEIRTPLNAILGFSKELQQADFS--ADK 479 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 R + N I+ + + ++ IVND+LD+SKIE+GK+ ++ P S++E + E I ++ A+ Sbjct: 480 R--DQINIINAAADNLMTIVNDVLDVSKIEAGKLQINSHPFSINELLEEMIGVMAKSAHL 537 Query: 682 KRILIRTSFANNIP----RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-- 735 K + F +I +++ D ++QI N+L NA+ FT + G I +S + E Sbjct: 538 KGL----EFVYDIEPLPLKLIGDSYRIRQILNNLLGNALKFTDT-GHIGLSASGKLLEHG 592 Query: 736 --EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E+ +++ DTG+G++ + K F Q+ ++ +GTGLGL + K +V G+ Sbjct: 593 IFELNIKIEDTGIGISREDKRKLFTAFSQVDDALNRSYQGTGLGLVICKELVKLMHGQLS 652 Query: 794 IFSTPAKGTLIEI 806 + S+P +G++ + Sbjct: 653 LQSSPGQGSVFNV 665 >gi|325124545|gb|ADY84068.1| GacS-like sensor kinase protein [Acinetobacter calcoaceticus PHEA-2] Length = 935 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 92/284 (32%), Positives = 154/284 (54%), Gaps = 24/284 (8%) Query: 526 EKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLS----------- 572 + + + ST E +LL I ++K+L FS L + + +E +E + + Sbjct: 220 QHMVINSTGELRLLQRDIANVVKRLHFSF---LELKEHTEQTEEDLRRTLDTLEVQNITY 276 Query: 573 -HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 A+ A + KS FLA +SHE+RTPL +I GF ++ Q+ L N + + Y I Sbjct: 277 RQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLNNEQNL-YLQTIR 333 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 +S +L ++ND+LD SKI++GK+ L P L+EAV + + ++ A +K I + +A Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393 Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVG 747 +NIP +++ D KQI N++SNAI FTP G I+ + H + +L V+D+G+G Sbjct: 394 DNIPQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIGQCLLHFSVQDSGIG 453 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 ++ + +K + F Q S + GTGLGL ++K +V G+ Sbjct: 454 LSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQ 497 >gi|239908975|ref|YP_002955717.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798842|dbj|BAH77831.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 939 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 133/255 (52%), Gaps = 9/255 (3%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + KL AK +AE+ + K+DFLA+V+HE+RTP+ AI G ++ + + + R + Sbjct: 406 RQKLEEAKVVAEQANKTKTDFLAKVTHEVRTPMNAIKGMNDYLLSTALT--ADQR--DCL 461 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I S + +L IVNDLLD+SKIE+GK+ L +L + L+ AN+K + + Sbjct: 462 TAIKESSDHLLTIVNDLLDLSKIEAGKIVLETIDFNLKSVIESTTRLMLPLANKKNLELV 521 Query: 688 TSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG----QIIISTTHTSNEEVILRVR 742 T ++ ++ D ++QI LN+ +NA+ FT GG + E+ + V Sbjct: 522 TLLDDSADVVVRGDPARLRQILLNLTNNALKFTKLGGIAVTASATTDATAGGYEIAITVS 581 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTGVG+ L+ +PF Q +S + GTGLGL + K +V G + STP +G+ Sbjct: 582 DTGVGIERARLDTIFEPFTQGDDSTSRKFGGTGLGLSVCKQLVGLMHGAITVESTPGEGS 641 Query: 803 LIEIIFPLYDTSHPH 817 + PL + H Sbjct: 642 SFTVRLPLAQGDYNH 656 >gi|218248943|ref|YP_002374314.1| histidine kinase [Cyanothece sp. PCC 8801] gi|218169421|gb|ACK68158.1| histidine kinase [Cyanothece sp. PCC 8801] Length = 828 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/259 (29%), Positives = 140/259 (54%), Gaps = 5/259 (1%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y + D++E ++ +L+ + + K +FLA +SHE+++PLTA++G S ++ Q Sbjct: 298 YLVLATDVTEQQRLCQELAAKNADLVQLNRLKDEFLACISHELKSPLTAVVGLSSLLGEQ 357 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI- 672 + G L N R + YA I RSG ++ +VNDLLD++++E+G++ L F P+++ A Sbjct: 358 KVGEL-NTRQVHYAELIYRSGRQLMTLVNDLLDLTRLETGQLKLSFLPLNIKNICERAYH 416 Query: 673 SLVQLYANEKRI--LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 S+++ Y ++ + I + ILAD + Q+ +++L NA+ FT + G++ I + Sbjct: 417 SIIEKYQSKTDVPLSINLDIEPALKFILADELRLHQMLVHLLDNAMKFTQAEGKVGIRVS 476 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 N + V DTG+G+ + F Q+ N + EGTGLGL L + + A+ G Sbjct: 477 RWEN-WIAFTVWDTGIGIPEESQHLIFQKFQQLENPLTRKFEGTGLGLVLTQRLARAHGG 535 Query: 791 KFYIFSTPAKGTLIEIIFP 809 S +G+ ++ P Sbjct: 536 DISFISKEGQGSQFTLLLP 554 >gi|172037421|ref|YP_001803922.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171698875|gb|ACB51856.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 418 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/250 (33%), Positives = 142/250 (56%), Gaps = 8/250 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHK-SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E KQ+++++ H K + +E+S + S FLA +SHE+RTP+ AI+GFS+++ Q PL + Sbjct: 167 ELKQQQDQI-HLKNLQLQEASRRQSQFLATISHELRTPMNAIMGFSQLLLRQYPDPLTDQ 225 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS-LVQLYAN 680 + + S NL L ++N++LD SK+E G+M+L+ LD V + L L N Sbjct: 226 QIDIIQRIFNNSQNL-LTLINEVLDFSKLEIGQMDLNIGKFDLDILVRFTVEELSSLTLN 284 Query: 681 EKRIL-IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + L + ANN +++ D +K+I +N+LSNAI FTP+ G+I + + E + + Sbjct: 285 KNLSLNVDIHLANN--QVINDKNFLKRILINLLSNAIKFTPA-GEIWVKVWEMNPERIAI 341 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 + DTGVG+ L+ PF Q+ + + GTGLGL + ++V G+ ++ S Sbjct: 342 TIEDTGVGIAPEHLKTIFTPFHQVDQTLTRQHLGTGLGLAIVYSLVKMMQGEIHVTSQLE 401 Query: 800 KGTLIEIIFP 809 +G++ + P Sbjct: 402 QGSVFRVEIP 411 >gi|320162521|ref|YP_004175746.1| putative two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319996375|dbj|BAJ65146.1| putative two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 1314 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 109/389 (28%), Positives = 184/389 (47%), Gaps = 36/389 (9%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 E V+ R + + E E Q ++L+A +GI +++ +G L N A + GY + ++ Sbjct: 953 EMVEERTAQLRAEKERTQ--AVLDAAGEGIFVLDPQGAFLYCNPAFESITGYSLVELQVG 1010 Query: 496 PFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554 +L++N ++ Y EILS EK G + PF + Sbjct: 1011 SPWRWLDENEGNLFKTYQNREILS----TRWEKEIHGWRR-----------NGAPFDAIL 1055 Query: 555 SLT-MHDISEWKQEKNKLSHAKKIAE----KESSH-KSDFLARVSHEIRTPLTAIIGFSE 608 +LT +HD ++ N + H + + KE KS F++ VSHE+RTPLT+I ++E Sbjct: 1056 TLTPVHD-----EDGNVIKHVGTLQDITRLKELDRLKSQFVSNVSHELRTPLTSIKLYAE 1110 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 + R Y + R + +V DLL IS+++ GK + + L V Sbjct: 1111 QLPTA-----SAERSARYLAALQRETARLEAMVEDLLTISRLDLGKTRIQISALPLAPFV 1165 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 + + ++ A+ + + + ++P + D R V QI N+L+NAI++TP+G I IS Sbjct: 1166 QQIVEDRRMLAHSRGLTLHFQQDKHLPPVAGDERFVMQIVTNLLTNAINYTPAGRNIFIS 1225 Query: 729 TTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 H E LR + D GVG+ E+ + F + ++++ GTGLGL + K MV+ Sbjct: 1226 VRHDPQEAGFLRLTIEDEGVGIPPEEMPHLFERFFRGSAGRKLQVPGTGLGLAIVKEMVE 1285 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 GK +I S KGT + P++ H Sbjct: 1286 RLNGKIHIESEVGKGTKAIVWLPVWKDEH 1314 >gi|254227634|ref|ZP_04921065.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262395682|ref|YP_003287535.1| putative sensory box sensor histidine kinase/response regulator [Vibrio sp. Ex25] gi|151939676|gb|EDN58503.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262339276|gb|ACY53070.1| putative sensory box sensor histidine kinase/response regulator [Vibrio sp. Ex25] Length = 873 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 110/377 (29%), Positives = 179/377 (47%), Gaps = 44/377 (11%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK----------- 495 + ++ QL + E D I I + +G I N A +L Y +E+++ K Sbjct: 234 LSAKISQLAEVAEHARDTIIITHPDGTIAWVNPAFEQLTEYTLEEVIGKSPGELLQGPDT 293 Query: 496 -PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE----KITLGSTKEEKLLSLRIIIKKLPF 550 P TV L + SV H + L+ ++ ++ L +E LR I + Sbjct: 294 DPNTVALL--SKSVRKHSPIRVEILNYTKSKHPYWVELELSPVFDEDGGLLRFIAVE--- 348 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 DI++ ++ + +LS A ++K KS+FLA +SHEIRTP+ AI+G SE++ Sbjct: 349 --------RDITDRRRMERRLSSALDKSKKAMQAKSEFLANMSHEIRTPMNAIMGISEIL 400 Query: 611 ---KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 +N+R PR E + +S N ++ I+ND+LD SK+E+GK+ L E Sbjct: 401 LENENRR-----EPR--ELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDFRSL 453 Query: 668 VSEAISLVQLYANEK--RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 V +L A++K ++L+ A N ++ D + QI LN++ NA+ FT G Sbjct: 454 VESCTALCAYQADKKNLKLLVDMPLAMNTV-VVGDKGRINQILLNLIGNAVKFTDEGH-- 510 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 ++ S V DTG+G+ L M F Q+ S R EGTGLGL ++K ++ Sbjct: 511 VLLKVRESEHGFDFSVSDTGIGIPEDRLAHIMDKFEQVDTSATRRHEGTGLGLAISKRLI 570 Query: 786 DANMGKFYIFSTPAKGT 802 G+ + S KG+ Sbjct: 571 SMYNGELCVHSDFGKGS 587 >gi|271499646|ref|YP_003332671.1| integral membrane sensor hybrid histidine kinase [Dickeya dadantii Ech586] gi|270343201|gb|ACZ75966.1| integral membrane sensor hybrid histidine kinase [Dickeya dadantii Ech586] Length = 962 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/262 (32%), Positives = 133/262 (50%), Gaps = 6/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 453 VLLDVSARVRMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSL- 511 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P R +E + S L+L I++D+LD SKIES ++ + + E ++ +S Sbjct: 512 PSDANRLVEA---MQNSSALLLKIISDILDFSKIESEQLKIEPSEFAPREVINHIVSNYL 568 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +KR+ + +P +++ D ++Q+ N+LSNAI FT +G I+ + Sbjct: 569 PLVVKKRLELYCYIDPRVPLQLMGDAVRLQQVLSNLLSNAIKFTDTGC-IVFQVVCSDEG 627 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++ +VRDTGVG+ + K PF Q Q +GTGLGL + + +V G I Sbjct: 628 YLVFKVRDTGVGIDTRAVMKLFDPFFQAGTGVQRHFQGTGLGLAICEKLVSLMDGDITIE 687 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ I PLY S+P Sbjct: 688 SEPGLGSEFGIRIPLYRASYPQ 709 >gi|282900038|ref|ZP_06307997.1| Multi-sensor Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] gi|281195070|gb|EFA70008.1| Multi-sensor Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] Length = 663 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/229 (36%), Positives = 123/229 (53%), Gaps = 8/229 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 +++FLA +SHE+ TPLT +IG S + G L PR EY I SG +LD++ND+ Sbjct: 433 RNEFLATISHELLTPLTYVIGMSSTLLRWPLGEL-TPRQREYLQTIHDSGERLLDMINDI 491 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAI-SLVQLYANEKRILIRTSFANNIPR---ILAD 700 LD+S+I++GK L+ SL + SL++ N K L N PR AD Sbjct: 492 LDLSQIQAGKTVLNICEFSLTRLAENIVDSLLEKSTNAKVTLKLDVQVN--PRHDQFSAD 549 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 ++QI N+L+NAI FTP GG + + N VI +V DTG+G+ +L + F Sbjct: 550 PGRIEQIIWNLLTNAIKFTPQGGNVTLRFWVEDNT-VIFQVEDTGIGIPEEKLPLVFEKF 608 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q+ S EGTG+GL L K +V+ + G+ + ST G++ + P Sbjct: 609 QQVDASYHRPYEGTGIGLALTKQIVELHRGRIEVESTVGVGSIFTVWIP 657 >gi|255034206|ref|YP_003084827.1| histidine kinase [Dyadobacter fermentans DSM 18053] gi|254946962|gb|ACT91662.1| histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1200 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/259 (33%), Positives = 139/259 (53%), Gaps = 9/259 (3%) Query: 566 QEKNKLSHAKKIAEKE--SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 +EKN L KK E E + +KS+FLA +SHE+RTPL +I+ S ++ L + + Sbjct: 508 EEKN-LEILKKAEELELTTRYKSEFLANMSHELRTPLNSILLLSRLLAENDDKNLTSEQ- 565 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 IEYA I SGN +L +++++LD+SKIE+GKM L + PVS+ E + L A EK Sbjct: 566 IEYATVIQSSGNGLLGLIDEILDLSKIEAGKMELDYVPVSVKEICDDMKGLFAPVAREKG 625 Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRV 741 + + N +P ++ D ++QI N++SNA+ FT G I N+ ++ V Sbjct: 626 LDFSVAIGNGVPPVIETDKMRMEQILKNLVSNALKFTSQGSVGITVKLQEGNDRMLCFVV 685 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RDTG+G+ + + + F Q S + + GTGLGL +++ + G+ + S +G Sbjct: 686 RDTGIGVAPEKQQHIFEAFQQADGSTKRKYGGTGLGLSISRELAKLLGGEISLTSVVNEG 745 Query: 802 ---TLIEIIFPLYDTSHPH 817 TL I P Y + P Sbjct: 746 SEFTLFVPIKPTYVAAEPE 764 >gi|85708111|ref|ZP_01039177.1| sensory box histidine kinase/response regulator [Erythrobacter sp. NAP1] gi|85689645|gb|EAQ29648.1| sensory box histidine kinase/response regulator [Erythrobacter sp. NAP1] Length = 649 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 92/350 (26%), Positives = 167/350 (47%), Gaps = 27/350 (7%) Query: 457 ILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++E D GI ++ GI+ S N ++ G+ E+IL + F+ F +T YL + Sbjct: 282 VIERVRDYGIFTLDTGGIVTSWNLGAERIKGWQAEEILGQHFSQFYPDDT----RDYLPD 337 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLR---------IIIKKLPFSSC----YSLTMHDIS 562 Q LE+ E++ +R ++I L + ++ D++ Sbjct: 338 -------QMLERARAEGAAEDEGWRVRKDGSVFWANVVITALRNEAGELQGFAKVTRDMT 390 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ ++ L A++ A S KS+FL+R SHE+RTPL AI+GF ++++ P Sbjct: 391 ERRRSEDALRLAREDAVAASLAKSEFLSRTSHELRTPLNAILGFGQLLEID-LEDFSQP- 448 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + E I R+G +L ++NDLLDIS IE+G L +E V + + E L + + Sbjct: 449 HQEAVERITRAGRHLLSLINDLLDISSIEAGGAELEYEEVDVAAMLEEVHDLAEPIVSSA 508 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + + +++AD R + Q+ LN++ NA + G + + + + V Sbjct: 509 GLSFEMALPEAGAKVVADRRRMTQVILNLVGNAAKYNVEGSFVRLGASLDGDGAATFFVE 568 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 D G G+ + F ++ ++ + EGTGLGL L+K +V++ G+ Sbjct: 569 DDGPGIDPANASRLFTAFDRLGQHKRDKTEGTGLGLALSKGLVESMGGQI 618 >gi|322382892|ref|ZP_08056727.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153161|gb|EFX45616.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 606 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 95/368 (25%), Positives = 181/368 (49%), Gaps = 33/368 (8%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L +LE G+ ++++ G I NR+ + GY ++L K + L+ Sbjct: 260 RLQGVLENMVSGVMMVDQRGTITLVNRSAEDILGYSSHELLNKSY---LDAGFQLEFTAL 316 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNK 570 L + + R E++ L +E++L + + I++ + +HDI+ ++ Sbjct: 317 LADAIETHTR-VREELML-HFPQEQILEVHVSPIVQGDGQRKGVLVVLHDITAVRR---- 370 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANY 629 ++I +S+F+A VSHE++TP+ A+ GF+E + G L + + Sbjct: 371 ---LERI-------RSEFVANVSHELKTPVAAVKGFAETLMA---GALEDKEMARSFLQI 417 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I + + ++ D+L++SKIES ++ L F PV ++ V +I +++ A +K I + + Sbjct: 418 IYDESDRLNRLIGDILELSKIESKRIPLQFSPVDVESIVENSIQMMKAEAEKKHITLESC 477 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-------SNEEVILRVR 742 N + I AD ++QI +N+LSN I +TP GG++ I NE + +R+ Sbjct: 478 VENELY-IEADEDRLRQILINLLSNGISYTPEGGRVSIGVEFVPSLDDNPDNERMRIRIS 536 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ +L + + F ++ ++ GTGLGL + K + + + G + S KGT Sbjct: 537 DTGIGIPEKDLPRIFERFYRVDKARSRSSGGTGLGLSIVKHLTELHHGTISVESEAGKGT 596 Query: 803 LIEIIFPL 810 I P+ Sbjct: 597 TFNIELPV 604 >gi|262170598|ref|ZP_06038276.1| BarA sensory histidine kinase [Vibrio mimicus MB-451] gi|261891674|gb|EEY37660.1| BarA sensory histidine kinase [Vibrio mimicus MB-451] Length = 916 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 265 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQ-TDYLQ 319 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L I+ND+LD SK+E+GK+ L P E + E ++L A+EK + I Sbjct: 320 TIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITL 379 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDT 744 IPR ++ D ++Q+ N++ N+I FT G + ++VI VRDT Sbjct: 380 KIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDT 439 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 440 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTF 499 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 500 WFTLRLHTTELP 511 >gi|92114785|ref|YP_574713.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens DSM 3043] gi|91797875|gb|ABE60014.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens DSM 3043] Length = 737 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/248 (31%), Positives = 134/248 (54%), Gaps = 9/248 (3%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L + AE + KSDFLA VSHEIRTPL ++G +E+++ + + +Y Sbjct: 221 QELKDTAREAESANQAKSDFLATVSHEIRTPLNGVLGMTELLRERELDGTSH----QYVE 276 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I SG+ +L +++DLLD SKIE+G + + E SL + + L++ A ++ + Sbjct: 277 TIHESGSQLLTLISDLLDFSKIEAGHLEIERETFSLQALIDSLLRLLEPRAQHVELI--S 334 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 A ++P L D ++Q+ LN+LSNA+ FT S G + + + + VRDTG G Sbjct: 335 DVAPSVPSHSLGDAGRLRQVLLNLLSNALKFT-SRGSVTLIVKPMRGDWMHFEVRDTGCG 393 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + + ++ +PF Q ++ +G GTGLGL ++K +V+A G+ + S +G+ Sbjct: 394 IEDADPQRLFQPFYQGASAVHYQG-GTGLGLAISKRLVEAMQGRIGVSSPAGEGSRFWFE 452 Query: 808 FPLYDTSH 815 PL S Sbjct: 453 LPLPSASE 460 >gi|324113624|gb|EGC07599.1| TMAO reductase sytem sensor TorS [Escherichia fergusonii B253] Length = 902 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/250 (35%), Positives = 136/250 (54%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT GQII+ + T E+ +L V D+G Sbjct: 535 TAIADDVPTALMGDPRRIRQVITNLLSNALRFTDE-GQIILR-SRTDGEQWLLEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLTEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRIATAP 658 >gi|23428538|gb|AAL11449.1| putative global response regulation sensor kinase GrrS [Serratia plymuthica] Length = 908 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/238 (33%), Positives = 134/238 (56%), Gaps = 10/238 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K + + +Y Sbjct: 277 ELDLAKKRAQEAARIKSEFLASMSHELRTPLNGVIGFTRQMLKTEM-----SVTQTDYLQ 331 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS N +L I+ND+LD SK+E+GK+ L P SL E + E I L+ A+EK + + Sbjct: 332 TIERSANNLLTIINDVLDFSKLEAGKLVLEHIPFSLRETLDEVIVLLAPSAHEKGLELTL 391 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDT 744 N++P +++ D ++QI N+L NAI FT +G ++ + E+ +++ DT Sbjct: 392 DVHNDVPEQVIGDSLRLQQIITNLLGNAIKFTETGNIDIRVELRGQQDHQVELEVQIHDT 451 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G++ + + + F Q S R GTGLGL + + +V G S +G+ Sbjct: 452 GIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDICFHSQLNRGS 509 >gi|77543221|gb|ABA87031.1| putative histidine kinase [Vibrio cholerae] Length = 1268 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 106/394 (26%), Positives = 193/394 (48%), Gaps = 36/394 (9%) Query: 437 DVDTRINKRKMEIEVMQLC--SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL- 493 +++ ++ R EI + + SIL + I + EGII + N A KL GY E++L Sbjct: 369 ELEQQVALRTAEISRVNILQRSILSSAGYAIIATDEEGIITAFNPAAEKLLGYRAEEVLF 428 Query: 494 RKPFTVFLEQNTPSVMNHYLTEI-------LSLDLRQTLEKITLGSTKEEKLLSL----R 542 ++ ++F + P+ + H+ ++ +++ + K LG T + L Sbjct: 429 QQTPSIF---HLPAEVEHHAAKLTTELGSNIAVGFETLVAKARLGQTDNARWTYLTKTGE 485 Query: 543 IIIKKLPFSSC---------YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 + KL S+ + D+++ + + +L+ AK+ AE + KS+FLA +S Sbjct: 486 QVQVKLNVSALKDEQGQLAGFLGIAFDLTKQLKYEVELAQAKEQAESANKAKSEFLANMS 545 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HEIRTP+ ++G +++ N + R +Y + +L ++ND+LD SKIE+G Sbjct: 546 HEIRTPMNGVLGLLQLVANSTL----DQRQADYIEKAYSAAKSLLTLLNDILDFSKIEAG 601 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNIL 712 K+ L P SL + + + + A +K + + ++P +L D +KQ+ +N++ Sbjct: 602 KLELDPHPFSLTDLLQDIGLVFSSSAEQKGLEVLYDVTADVPEHLLGDSFRIKQVLINLV 661 Query: 713 SNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 NAI FT G+I+IS S E + ++DTG+G+T + F Q +S Sbjct: 662 GNAIKFTDK-GEILISIRSQSLPEGEINLSFSIKDTGIGITLEQQNALFSGFQQADSSIS 720 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 R GTGLGL ++K +V+ G+ + S G+ Sbjct: 721 RRYGGTGLGLAISKRLVNLMGGEIGVESEFGCGS 754 >gi|332994707|gb|AEF04762.1| sensor protein BarA [Alteromonas sp. SN2] Length = 1043 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/245 (33%), Positives = 137/245 (55%), Gaps = 15/245 (6%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +++ +L A+K A K S+ KS FLA +SHEIRTPL I+GFS + + P Sbjct: 411 EEQNARLDIARKDAIKASNVKSQFLANMSHEIRTPLNGILGFSRELTHASL-PSDQQ--- 466 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E I+ + + +L IVND+LD SKIE+GK+ ++ +P S + + E ++++ ++ K++ Sbjct: 467 EQVRIINTAADNLLTIVNDVLDFSKIEAGKLQINNQPFSPNTLLEEMVTIMAKSSHSKKL 526 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG-------GQIIISTTHTSNEEV 737 A +++ D+ +KQI N+L NA+ FTPSG G+ ++ H E+ Sbjct: 527 EFVFDLAPLPEKLIGDVFRIKQILNNLLGNALKFTPSGTITLAVKGRPLLHGIH----EI 582 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V DTG+G+ + +K F Q+ +S +GTGLGL +++ +V G + ST Sbjct: 583 EITVEDTGIGINRQDRKKLFNAFSQVDDSINRNYQGTGLGLVISRELVRLMRGDLTLKST 642 Query: 798 PAKGT 802 P +G+ Sbjct: 643 PRQGS 647 >gi|332707304|ref|ZP_08427357.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332354038|gb|EGJ33525.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 876 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/233 (33%), Positives = 134/233 (57%), Gaps = 15/233 (6%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHE+RTPL ++G++++++ P + + N I + GN +L ++ND+ Sbjct: 406 KSQFLANMSHELRTPLNGVLGYAQILQRD---PQITAQQKDQINLIYQCGNYLLHLINDI 462 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703 LD+SKIE+ KM L V L + E + + ++ A +K I ++++P ILAD + Sbjct: 463 LDLSKIEARKMELFPREVHLPSFLMEVVEMCRVKAQQKEIAFIYLPSSHLPDGILADAKR 522 Query: 704 VKQIALNILSNAIHFTPSGG---QIIISTTH-----TSNEEVILR--VRDTGVGMTNYEL 753 ++Q+ +N+L NAI FT GG ++ + + H + V LR ++DTG+GMT +L Sbjct: 523 LRQVLINLLGNAIKFTDHGGVTFKVEVISKHPRLPTLQSPLVRLRFIIKDTGIGMTPEQL 582 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 EK PF Q+ + R +GTGLGL +++ ++ + ST KG++ I Sbjct: 583 EKIFLPFEQVGDVDH-REQGTGLGLAISQTIIKLMGSAINVESTYGKGSMFSI 634 >gi|220906228|ref|YP_002481539.1| ATP-binding region ATPase domain-containing protein [Cyanothece sp. PCC 7425] gi|219862839|gb|ACL43178.1| ATP-binding region ATPase domain protein [Cyanothece sp. PCC 7425] Length = 2051 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 114/442 (25%), Positives = 210/442 (47%), Gaps = 68/442 (15%) Query: 415 FIPFEKANQ-FPENMPQNGIEPEDVDTRINKRKME-IEVMQLCSILEATSDGIAIIN--- 469 F+ EK + + E GI+P V I E I Q C ++ ++++N Sbjct: 1382 FLLLEKGGKLWIEASGAVGIDPITVQQSIPLAAQETIAPGQACPLM-GILLPLSVVNYVA 1440 Query: 470 --REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 RE I+LS N ++LF + +KP +V P + LT +L L+ Sbjct: 1441 RTREAIVLS-NATSAELFAADAYILAQKPKSVLC---APILHQGKLTGMLYLE-----NN 1491 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE----------------------WK 565 +T G+ +++L L+++ + S + D+ E + Sbjct: 1492 LTTGAFTQDRLEVLQLLAAQAAISIENARLYADLEEANHTLEAKVTERTIELEEKNLHLQ 1551 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KNQRFGPLGNPRYI 624 QE + A++ A+ S KS+FLA +SHE+RTPL I+G+S+++ KN+ + Sbjct: 1552 QEIQERQRAEEAAKVASRAKSEFLANMSHELRTPLNGILGYSQILSKNKAL----TEQQQ 1607 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 N I + G +L ++ND+LD+SKIE+ KM L+ +L + + + ++ A +K+I Sbjct: 1608 NGLNVIHQCGEYLLTLINDVLDLSKIEARKMELYPSTFNLPHFLENMLEICRIRATQKQI 1667 Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIS--------------- 728 + + +P+ + AD + ++Q+ LN++ NAI FTP+G I++ Sbjct: 1668 SLNYEILSPLPQFVHADEKRLQQVLLNLVGNAIKFTPAG---IVTFKVGYVQHWPSAPAE 1724 Query: 729 ----TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + ++ ++ DTG+G++ +LE+ +PF + Q R EGTGLGL +++ + Sbjct: 1725 QSSPNQAVAQSKIRFQIEDTGIGISPEQLEQIFQPFHRGGEPGQ-RTEGTGLGLAISRQL 1783 Query: 785 VDANMGKFYIFSTPAKGTLIEI 806 V G+ + S +G+L + Sbjct: 1784 VQLMGGEIQVKSILGQGSLFRL 1805 >gi|119898773|ref|YP_933986.1| putative hybrid sensor and regulator [Azoarcus sp. BH72] gi|119671186|emb|CAL95099.1| putative hybrid sensor and regulator [Azoarcus sp. BH72] Length = 1682 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 98/371 (26%), Positives = 181/371 (48%), Gaps = 35/371 (9%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----- 510 +I + + GIA+I ++ +++ NR + +FG+P +++ K ++ + Sbjct: 806 AIFDTATSGIALI-KDRVLIRCNRRLHDIFGWPDGEMVGKSTAIWYVDEASYALGGDAVY 864 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF---SSCYSLTMHDISEWKQE 567 + L + ++ Q L + ++ L R+ K + S + DI+ ++ Sbjct: 865 NRLWQGEAVCREQELMR------RDGSLFWARLTGKAVDIHDRSKGTVWVIDDITTEREA 918 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + +A+K+AE + K++FLA +SHEIRTP+ A+IG + ++ N + +Y Sbjct: 919 FQTVRNAQKLAEDAARAKANFLANMSHEIRTPMNAVIGMTHLVLNTDL----TRQQRDYL 974 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I S +L I+ND+LD+SKIE+GKM + LD + L+ A K + + Sbjct: 975 KKIQGSSQHLLGIINDILDLSKIEAGKMAVEHIEFDLDTVLENVTGLISEKATGKGLELI 1034 Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRD 743 +PR ++ D + Q+ +N +NA+ FT G +I T+ +V+LR V D Sbjct: 1035 IDVGKTVPRSLVGDPLRLGQVLINYANNAVKFTERGSIVIRCDLAETAERDVVLRFSVTD 1094 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK---------AMVDANMGK--- 791 TG+G+ ++ + + F Q NS + GTGLGL +++ A VD+ GK Sbjct: 1095 TGIGIEAEQIPRLFQTFEQADNSTTRKYGGTGLGLAISRELAHMMGGEAGVDSEYGKGST 1154 Query: 792 FYIFSTPAKGT 802 F+ + A+G+ Sbjct: 1155 FWFTARLARGS 1165 >gi|307151277|ref|YP_003886661.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306981505|gb|ADN13386.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1719 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 110/411 (26%), Positives = 190/411 (46%), Gaps = 58/411 (14%) Query: 440 TRINKRKMEIEVMQ-----LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 T IN RK E ++ E + G+A++N L NR++ ++ GY ++LR Sbjct: 1334 TDINTRKRAQEALRESEERFRRAFEDAAIGMALVNLHRRFLKVNRSLCEMIGYSEAELLR 1393 Query: 495 KPFTVF-----LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL----SLRIII 545 F LE N ++ E + + EK L +E +L+ S+ +I Sbjct: 1394 LTFEDITHPDDLETNLAALEQMLKGEYSTYQV----EKRYL--HQEGRLIWAISSVSLIK 1447 Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + Y + + DISE ++KL K +F++ VSHE+RTPLTAI G Sbjct: 1448 DQDHLPLYYVVQIQDISE----RHKLDRMK----------DEFISIVSHELRTPLTAIRG 1493 Query: 606 FSEVIKNQRFG--PLGNPRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 ++++ PL R ++ A N +R LV ND+LD+ ++ESGK L +P Sbjct: 1494 SLGILESGVLNDEPLTANRMLKVALNNSERLARLV----NDILDLERLESGKTELVMKPC 1549 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 + + + +A+ V+ AN I R +F ++ AD ++ Q +N+L N I F+ G Sbjct: 1550 QVSDLMEQAVESVEAIANLASI--RINFTAVEAQVWADFDAIVQTLINLLGNGIKFSDPG 1607 Query: 723 GQIIISTTHTSNEE---------------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 I + ++ E ++ + D G G+ + +LE F Q+ S Sbjct: 1608 SMIWLKAQRSNGEWGLQKSENFPHLGSSYLLFSIEDQGRGIPSDKLESIFGRFQQVDVSD 1667 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 + GTGLGL + K++++ + GK ++ S +G++ PL++ PHD Sbjct: 1668 SRQKGGTGLGLAICKSIIEQHNGKIWVESVVGQGSIFYFTLPLWEQEPPHD 1718 >gi|298528267|ref|ZP_07015671.1| integral membrane sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511919|gb|EFI35821.1| integral membrane sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 809 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/259 (30%), Positives = 134/259 (51%), Gaps = 8/259 (3%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E +++ ++L A+ AE + KS+FLA +SHEIRTPL I G ++++ R + Sbjct: 406 GELEEKSSQLEAARDKAETANRAKSEFLANMSHEIRTPLNGITGMMQLLQTTRL----DS 461 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 EY + S + + +++D+LD+S++E+G+M + E ++ E L ++ A E Sbjct: 462 NQKEYVDLALSSASRLTRLLSDILDLSRVEAGRMVILEEEFNVQELCRSVCELFRIQAGE 521 Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEV 737 K I + + ++P R++ D ++QI N++ N++ FT G I T +V Sbjct: 522 KGIELEYTLDPSLPSRLMGDETRLQQILFNLVGNSLKFTREGRVRINWTLQKRGLDRHQV 581 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 ++ V DTG G+ +L+ +PF Q S R EG GLGL + +VD G + S Sbjct: 582 LITVTDTGSGIAPEKLDDLFQPFVQEDGSSTRRHEGAGLGLSIVSRLVDLMHGTISVDSA 641 Query: 798 PAKGTLIEIIFPLYDTSHP 816 P +GT I PL + P Sbjct: 642 PGEGTAFYIFLPLKVPAAP 660 >gi|184156899|ref|YP_001845238.1| Signal transduction histidine kinase [Acinetobacter baumannii ACICU] gi|183208493|gb|ACC55891.1| Signal transduction histidine kinase [Acinetobacter baumannii ACICU] Length = 906 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 92/284 (32%), Positives = 154/284 (54%), Gaps = 24/284 (8%) Query: 526 EKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLS----------- 572 + I + S+ E +LL I ++K+L FS L + + +E +E + + Sbjct: 191 QHIVINSSGELRLLQRDIANVVKRLHFSF---LELKEHTEQTEEDLRRTLDTLEVQNITY 247 Query: 573 -HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 A+ A + KS FLA +SHE+RTPL +I GF ++ Q+ L N + + Y I Sbjct: 248 RQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLSNEQNL-YLQTIR 304 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 +S +L ++ND+LD SKI++GK+ L P L+EAV + + ++ A +K I + +A Sbjct: 305 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 364 Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVG 747 +NIP +++ D KQI N++SNAI FTP G I+ + H + +L V+D+G+G Sbjct: 365 DNIPQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIGQCLLHFSVQDSGIG 424 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 ++ + +K + F Q S + GTGLGL ++K +V G+ Sbjct: 425 LSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQ 468 >gi|1136289|gb|AAC47300.1| histidine kinase A [Dictyostelium discoideum] Length = 2150 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 90/276 (32%), Positives = 147/276 (53%), Gaps = 22/276 (7%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ D++ +++ +L K+ AE+ + KS F+A VSHE+RTPL+ +IG S+++ Sbjct: 1360 TLRDMTS-RKDMQRLILEKEAAEEANKAKSAFVATVSHEVRTPLSGVIGVSDLLLETNL- 1417 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + +Y I +S +L I+ND+LD SK+ES ++ + P S+ E I ++ Sbjct: 1418 ---SEEQRDYVQTIQKSSQALLTIINDILDYSKLESRQLKMETLPFSIIETCQAVIHMLS 1474 Query: 677 LYANEK-RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-------I 727 + AN+ IL+R N+PRI+ D ++Q+ LN LSNAI FT G + I Sbjct: 1475 VAANDDVDILLRV--PPNVPRIIFGDAMRMRQVLLNRLSNAIKFTSRGHVLTDISVDDSI 1532 Query: 728 STTHTSNEEVI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 T+T EE+I + + DTG+G+ + +PF Q NS + GTGLGL + K + Sbjct: 1533 PPTNTE-EEIIHLCITIEDTGIGIPQSLFDSIFEPFSQADNSTTRKYGGTGLGLSITKRL 1591 Query: 785 VDANM-GKFYIFSTPAKGTLIEIIFP-LYDTSHPHD 818 ++ M G + S +G+ + I P L + P D Sbjct: 1592 IEEVMGGTIQVSSIVGQGSKFKCIIPFLLPNTSPSD 1627 >gi|86148721|ref|ZP_01066997.1| sensor protein TorS [Vibrio sp. MED222] gi|85833490|gb|EAQ51672.1| sensor protein TorS [Vibrio sp. MED222] Length = 1007 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/242 (33%), Positives = 129/242 (53%), Gaps = 7/242 (2%) Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 + A+ AE+ S KS FLA +SHEIRTP+ ++G + ++K+ PL + YA+ I+ Sbjct: 457 AKARNAAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLKDTGLDPLQSG----YADIIN 512 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 RSG +L I+ND+LD SKIE+G + + L + V + L++ A EK++ Sbjct: 513 RSGKNLLAILNDVLDYSKIEAGHLEIRTASFDLYQMVKDTYQLMEGRAAEKKLNFDFHIE 572 Query: 692 NNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMT 749 +N+ R D+ + QI N++ NAI FT +G I IS V+ V DTGVG+ Sbjct: 573 SNVQRYWRGDVTRISQILNNLVGNAIKFTETGSVDIFISLDIEDENRVMFEVSDTGVGID 632 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + E F Q + + G GTGLGL ++K+++ A G + S +G+ P Sbjct: 633 SKEQACLFDAFTQTGSGRNKTG-GTGLGLAISKSIMQAMNGDIGVHSEEGEGSQFWFSVP 691 Query: 810 LY 811 L+ Sbjct: 692 LF 693 >gi|150017373|ref|YP_001309627.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149903838|gb|ABR34671.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 951 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 86/251 (34%), Positives = 135/251 (53%), Gaps = 10/251 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+E + + +L AK AE + KS FLA +SHEIRTP+ I GF E++++ Sbjct: 299 TAQDITEQRIAEAELYKAKVEAESANIAKSQFLANMSHEIRTPMNGIFGFLELLESSNL- 357 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L ++ A + +++L+I+ND+LD SKIE+ K+ L +L + +A+SL Sbjct: 358 SLEQREFVREAK---SASDILLNIINDILDFSKIEAKKLVLENISFNLRTVIEDAVSLFV 414 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 EK I + T IP ++ D +KQI N+LSN + FT + G+I I + E Sbjct: 415 PKTLEKGIQLYTIIDPTIPDEVIGDPSRLKQILNNLLSNGVKFTDA-GEIAIKVDYFEEE 473 Query: 736 EVI----LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 I VRDTG+G++ +++K K F Q S + GTGLGL + + +V+ G+ Sbjct: 474 NEIALLTFEVRDTGIGISGKDIQKLFKSFNQADASTTRKYGGTGLGLSICRELVNMMDGE 533 Query: 792 FYIFSTPAKGT 802 + S KG+ Sbjct: 534 ITVDSVLDKGS 544 >gi|163848197|ref|YP_001636241.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222526102|ref|YP_002570573.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163669486|gb|ABY35852.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222449981|gb|ACM54247.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 2782 Score = 125 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 93/371 (25%), Positives = 171/371 (46%), Gaps = 26/371 (7%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-------- 501 E + ++ + ++G+ +++ I N A ++ P +L +P Sbjct: 2414 ETSKSAAVFRSMTEGVIVLDTRQQITLFNPAAEQVLDIPASQVLNQPLQQLASIGDDETS 2473 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMH 559 + ++ N + + + Q + ++ T +++++ I + P Y + + Sbjct: 2474 RRRAQTIYNGIVQGLRRMRESQGIFSTSVDLTDPSQVIAVNIAPVRGPDGQHYGEVVVLR 2533 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ + A+KE K F++ VSHE+RTPLTAI G+ +V+ L Sbjct: 2534 DITREIE-----------ADKE---KRQFISDVSHELRTPLTAIKGYVDVLLLTASLNL- 2578 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P I Y I + N + ++ D+L+ S+ +S K L F V + + E + ++L Sbjct: 2579 TPDQINYLTIIKNNTNRLRALIEDILEFSRPDS-KKKLTFTQVEIPAVIDEVVQSLRLEY 2637 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K + +R +P + AD + V QI N+ SNA+ +T GG I + + + Sbjct: 2638 ERKGMTVRIDAPPTLPPVTADQKRVSQIIFNLFSNAVKYTYEGGSITVRAFLNRANMMQI 2697 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTGVGM+ +L+K +PF + N + GTGLGL +AK +V+ + G+ ++ S Sbjct: 2698 EVEDTGVGMSPEQLKKLFRPFYRADNPLRDIAGGTGLGLSIAKQLVEMHGGEIWVTSELG 2757 Query: 800 KGTLIEIIFPL 810 KG+ PL Sbjct: 2758 KGSTFAFAIPL 2768 >gi|283850700|ref|ZP_06367987.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573943|gb|EFC21916.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 651 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 90/349 (25%), Positives = 169/349 (48%), Gaps = 31/349 (8%) Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 + D + +++++GIIL A + L G P + PF + + + + + T ++L Sbjct: 16 SGDALLLLDKDGIILHATPAAAPLLGSPANQLTGLPFGIPVMCDGQAEVTLAATGRVALL 75 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 R++L + LP + + + D++E + +L+ A++ A+ Sbjct: 76 RRESLHE------------------SGLPLTR---VVLRDVTEHRAVLAELAAAREAAKA 114 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 KS FLA ++HEIRTP+ I+G +E+ + + EY S +L + Sbjct: 115 GERAKSHFLANITHEIRTPMIGILGMTELTLATKL----TEKQREYLEMARHSAQSLLTV 170 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-A 699 +ND++D ++IE G + L P L V E IS+ + A +K ++I F +P++L Sbjct: 171 LNDIVDYARIEVGALELARTPFDLYATVEETISVFRPLAAKKHLVIGYQFIGAVPQVLVG 230 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELE 754 D ++QI +N++ NA+ FT +G ++ T E + L VRDTG+G+ +++ Sbjct: 231 DASRLRQILINLVGNAVKFTDAGSVVLTITRADDGSERKAAQLHLAVRDTGIGIPRDKIQ 290 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 F Q S R +G GLGL + + +V+ G + + S +G++ Sbjct: 291 AIFDSFTQADVSAARRYQGAGLGLAIVRHLVEMQGGLYSVESEEGQGSI 339 >gi|262166495|ref|ZP_06034232.1| BarA sensory histidine kinase [Vibrio mimicus VM223] gi|262026211|gb|EEY44879.1| BarA sensory histidine kinase [Vibrio mimicus VM223] Length = 927 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQ-TDYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L I+ND+LD SK+E+GK+ L P E + E ++L A+EK + I Sbjct: 331 TIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITL 390 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDT 744 IPR ++ D ++Q+ N++ N+I FT G + ++VI VRDT Sbjct: 391 KIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDT 450 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTF 510 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 511 WFTLRLHTTELP 522 >gi|153830878|ref|ZP_01983545.1| sensor histidine kinase/response regulator [Vibrio cholerae 623-39] gi|148873647|gb|EDL71782.1| sensor histidine kinase/response regulator [Vibrio cholerae 623-39] Length = 714 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 63 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQA-DYLQ 117 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L I+ND+LD SK+E+GK+ L P E + E ++L A+EK + I Sbjct: 118 TIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITL 177 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDT 744 IPR ++ D ++Q+ N++ N+I FT G + ++VI VRDT Sbjct: 178 KIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDT 237 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 238 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTF 297 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 298 WFTLRLHTTELP 309 >gi|75907244|ref|YP_321540.1| histidine kinase [Anabaena variabilis ATCC 29413] gi|75700969|gb|ABA20645.1| histidine kinase [Anabaena variabilis ATCC 29413] Length = 1109 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/269 (30%), Positives = 142/269 (52%), Gaps = 15/269 (5%) Query: 547 KLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 KLP + L + D++E +Q +L+ + + K +FLA +SHE++TPLTA++G Sbjct: 360 KLPNTDDLWLVLATDVTEQQQLCKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLG 419 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 S ++ +Q+ G L N R YA I +SG ++ +VND+LD++++E+G+M L PVS+ Sbjct: 420 LSRLLVDQQLGEL-NERQARYAGLIHQSGRHLMSVVNDILDLTRMETGQMELTPVPVSIR 478 Query: 666 EAVSEAISLVQLYANEKRILIRT------------SFANNIPRILADLRSVKQIALNILS 713 A+S + N+ T S ++ +I+AD ++Q+ +++LS Sbjct: 479 AVCDRALSEAKAIHNQTSKGSTTEATRQSTPEFTLSIELDLDQIVADELRLRQMLVHLLS 538 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 NA FT G+I + +H + V DTG+G+ ++ + F Q+ N + EG Sbjct: 539 NAFKFTEISGEIGLRVSHWEG-WIAFTVWDTGIGIPEHQQHLIFQKFQQLENPLTRQFEG 597 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TGLGL L +A+ + G S KG+ Sbjct: 598 TGLGLVLTRALARLHGGDVSFLSREGKGS 626 >gi|27379871|ref|NP_771400.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27353024|dbj|BAC50025.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 775 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/266 (31%), Positives = 137/266 (51%), Gaps = 24/266 (9%) Query: 559 HDISE-WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 D++E W+ EK AE ES KSDFLA +SHEIRTP+ ++G + ++ R Sbjct: 352 RDVTERWRAEK---------AEAESRAKSDFLAVMSHEIRTPMNGVLGLASMLLETRL-- 400 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM---NLHFEPVSLDEAVSEAISL 674 +P E I SG+ + I+ND+LD+SK+E+G+ + F P +L E V+ ++ Sbjct: 401 --DPEQREAVATIRESGDNLQRILNDILDLSKLEAGRFAFEAIDFAPHALVETVA---TV 455 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 V+ A K + ++ N+P L D+ ++Q+ LN+ SNA+ FT G I +T T Sbjct: 456 VRASAKSKGLTVKVELDPNLPPTLRGDVARIRQVLLNLASNAVKFTDEGEVTISATCQTR 515 Query: 734 NE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + V V+D+G+G+ +L F Q S R GTGLGL +++ +++ G Sbjct: 516 RDLLATVEWTVKDSGIGIAPEKLGLLFSDFAQADASISRRFGGTGLGLAISRRIIEQMGG 575 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHP 816 + STP +G+ L + P Sbjct: 576 TIGVTSTPGEGSTFRFTLVLPWSQAP 601 >gi|303247088|ref|ZP_07333363.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302491514|gb|EFL51399.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 871 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/249 (30%), Positives = 129/249 (51%), Gaps = 8/249 (3%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D++ K+ ++ L AK AE S KS+FLA +SHE+RTPL ++G ++++ R Sbjct: 466 LFDVTGQKRTEDSLRLAKSEAEAASLAKSEFLANISHEVRTPLNGVLGMLQLLETSRL-- 523 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + E+ G ++ ++ D+LD S IE+G++ L + + +++ ++ L Sbjct: 524 --SAEDAEHVATALACGRGLVRVLADILDFSLIEAGRLVLRRDACDIRSVIADVFGVLSL 581 Query: 678 YANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE 735 +K + A ++P +A D ++QI N++ NA+ FTP G + +S E Sbjct: 582 ECEKKELCATLDVAGDVPAFIATDAARLRQILFNVVGNAVKFTPRGTVHLSVSLASRRGE 641 Query: 736 E--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E ++ VRDTG+G+ +E +PF QI S + GTGLGL + K +V G Sbjct: 642 ETHLLFAVRDTGIGIPEDRIEAIFEPFTQIDGSLTRKYGGTGLGLGIVKRLVGLLDGHIT 701 Query: 794 IFSTPAKGT 802 + S P GT Sbjct: 702 VESEPGGGT 710 >gi|260755773|ref|ZP_05868121.1| histidine kinase [Brucella abortus bv. 6 str. 870] gi|260758996|ref|ZP_05871344.1| histidine kinase [Brucella abortus bv. 4 str. 292] gi|260884797|ref|ZP_05896411.1| histidine kinase [Brucella abortus bv. 9 str. C68] gi|260669314|gb|EEX56254.1| histidine kinase [Brucella abortus bv. 4 str. 292] gi|260675881|gb|EEX62702.1| histidine kinase [Brucella abortus bv. 6 str. 870] gi|260874325|gb|EEX81394.1| histidine kinase [Brucella abortus bv. 9 str. C68] Length = 843 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 86/254 (33%), Positives = 140/254 (55%), Gaps = 4/254 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT D+++ + + L + E K+DF+ VS+E+R+PLT IIGF+E+++ F Sbjct: 583 LTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAF 642 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L N R +EY +YI S +++L IVND+LD++ +++G M L VS+ EA+S A S V Sbjct: 643 GSL-NERQLEYLDYISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRV 701 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + I + A+++ AD V+Q+ N+LSNA+++ P G I++ Sbjct: 702 SERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVAR-DGA 760 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +V+ V D G GM + L+ K F PN + G GLGL + K+ V+ + G+ I Sbjct: 761 DVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRR--RGAGLGLAIVKSFVELHGGRVEID 818 Query: 796 STPAKGTLIEIIFP 809 + +GT + FP Sbjct: 819 TGEERGTTVICRFP 832 >gi|298530006|ref|ZP_07017408.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509380|gb|EFI33284.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1562 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/305 (28%), Positives = 150/305 (49%), Gaps = 48/305 (15%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ + ++++ A++ AE + KSDFLA +SHEIRTP+ A+IG S+++ Sbjct: 779 DITHRIESEHQVQLAREEAEAANRAKSDFLANMSHEIRTPMNAVIGLSQLLLQTSL---- 834 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + R +Y N I S ++L I+ND+LD SKIE+GK+ L +DE + + +L A Sbjct: 835 DDRQRDYLNKISNSSRMLLGIINDILDYSKIEAGKLELDMHTFRMDELLDQMKTLFGSTA 894 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG---------------- 722 +K + I + + ++PRIL D + Q+ N+L NA+ FT G Sbjct: 895 EDKGLEIIFNISTDVPRILKGDSLRLGQVFTNLLGNAVKFTEKGHVELAVHKSEVRSQES 954 Query: 723 ---------------------GQIIISTTHTSNEEVI---LRVRDTGVGMTNYELEKAMK 758 GQ + + S +++ ++DTG+GM + ++++ + Sbjct: 955 EVRDQGTEVRSQDLGQGTGDRGQGLEAADRDSESKIVRLLFEIKDTGIGMDDEQVQRLFQ 1014 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT--LIEIIFPLY-DTSH 815 PF Q S + GTGLGL ++ +V G + STP +G+ EI P+ ++ Sbjct: 1015 PFSQADTSTTRKYGGTGLGLVISHKLVQRMGGTLQVDSTPGQGSRFYFEIDLPMAPESET 1074 Query: 816 PHDCI 820 +CI Sbjct: 1075 TQECI 1079 >gi|172058212|ref|YP_001814672.1| multi-sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171990733|gb|ACB61655.1| multi-sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 577 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 104/365 (28%), Positives = 181/365 (49%), Gaps = 28/365 (7%) Query: 450 EVMQ---LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 E MQ L S++E G+ +I+ +G +L NR ++F + + + V + Sbjct: 233 EAMQRARLESLIEYMGAGLMLIDEKGYVLLVNRTYREMFNIYGQSNGQLYYRVLPNEKMS 292 Query: 507 SVM-NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 V+ + YLTE + +Q+ + G ++S I K ++ +DI+E K Sbjct: 293 QVIEDVYLTE--KPNRKQS--SVRFGLNSRTFMVSAAPIFGKNGRVQGTTVVFNDITEIK 348 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 KL +K DF+A VSHE++TPLT+I GF+E + + G P E Sbjct: 349 ----KLEQMRK----------DFVANVSHELKTPLTSIKGFAETLLD---GAQDVPEIRE 391 Query: 626 -YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + N I + +V DLL++S++E L V + + E +L+Q A EK++ Sbjct: 392 QFLNIIHDESERMQTLVEDLLELSRLEQDNYQLETTIVDVTSLLHETATLLQRKATEKQM 451 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 I + I ADL +KQ+ +N+++NA+++TP+GG + IS E V+LR++D Sbjct: 452 TIHLETEEEVF-IRADLNRLKQVVVNLVANALNYTPNGGNVWISL-EDGEEAVMLRIKDD 509 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ E+++ + F ++ ++ GTGLGL + K ++D + G + S +GT Sbjct: 510 GIGIHPKEMQRIFERFYRVDKARSRNSGGTGLGLAIVKHIIDLHHGTIDVESEENQGTTF 569 Query: 805 EIIFP 809 I P Sbjct: 570 TIRLP 574 >gi|91201482|emb|CAJ74542.1| similar to hybrid sensor [Candidatus Kuenenia stuttgartiensis] Length = 967 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/269 (29%), Positives = 143/269 (53%), Gaps = 10/269 (3%) Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 L++R+ + +L +I E + + +L A++ A ++ KS+FLA +SHEIRT Sbjct: 281 LAMRVEERTAELLKSNNLLKQEIDERHRIEAELEKAREAAVAANNAKSEFLASMSHEIRT 340 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 P+ AIIG S+++ P+ EY +G +L I+ND+LD+SK+E+G++ + Sbjct: 341 PMNAIIGMSDLLWETTL----TPKQSEYVKVFRNAGENLLQIINDILDLSKVEAGQITIE 396 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIH 717 +L E + + ++ A+EK + + A +IP + D + QI N++ NAI Sbjct: 397 HIEFNLREQIEKTCEVMAFRAHEKGLELNCHLAEDIPTSFIGDPVRLHQILTNLIGNAIK 456 Query: 718 FTPSGGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 FT + G+I+++ ++ V DTG+G+ + F Q+ +S + G Sbjct: 457 FTRT-GEILLTGKRNKLPGKKGMLLFLVSDTGIGLPEEKQSIIFNIFSQVDSSTTRQYGG 515 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TGLGL + K +V+ G+ ++ STP KG+ Sbjct: 516 TGLGLAICKRLVELMDGEIWVESTPGKGS 544 >gi|254508393|ref|ZP_05120514.1| two-component hybrid sensor and regulator [Vibrio parahaemolyticus 16] gi|219548706|gb|EED25710.1| two-component hybrid sensor and regulator [Vibrio parahaemolyticus 16] Length = 1594 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 135/255 (52%), Gaps = 9/255 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI++ K + L A++ + KS FLA +SHEIRTP+ +IG ++++ Sbjct: 941 DITDEKDAQAALERETLSAKQANEAKSRFLATMSHEIRTPMNGVIGMVDLLRETNL---- 996 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + + I S +L+I+ND+LD SKIESG+M L V++ V + + + + A Sbjct: 997 SRDQVNMVSTIRDSSFSLLEIINDILDFSKIESGQMELDLTDVNILNLVEKTLDALWVNA 1056 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS---GGQIIISTTHTSNE 735 ++K + + +N+P +L D +Q+ LN+L NAI FT S G + + +T E Sbjct: 1057 HQKDVGLYLEVEDNLPESLLLDPVRTRQVLLNLLGNAIKFTASHEQQGYVKVYVGYTEGE 1116 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + + V D GVGMT +LE+ KPF Q S + GTGLGL ++K+ V+ G+ + Sbjct: 1117 -LRIAVEDNGVGMTQDQLERLFKPFTQADTSTTRKFGGTGLGLSISKSFVELMGGEIRVT 1175 Query: 796 STPAKGTLIEIIFPL 810 S G+ P+ Sbjct: 1176 SKHHHGSRFTFTIPV 1190 >gi|126659307|ref|ZP_01730443.1| Histidine Kinase [Cyanothece sp. CCY0110] gi|126619389|gb|EAZ90122.1| Histidine Kinase [Cyanothece sp. CCY0110] Length = 835 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/253 (29%), Positives = 137/253 (54%), Gaps = 5/253 (1%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+++ +Q +L+ + + K +FLA +SHE+++PLTA++G S +++ + G L Sbjct: 310 DVTQQQQLCQELAAKNADLVQLNRLKDEFLACISHELKSPLTAVVGLSSLLQEDKIGQL- 368 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI-SLVQLY 678 NPR I YA I RSG ++ +VNDLLD++++E+G++ L F PV++ E A S+ + Y Sbjct: 369 NPRQIHYAQLIYRSGRQLMTLVNDLLDLTRLETGQLKLSFSPVNIKEICERAYHSITEKY 428 Query: 679 --ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 +++ + + ++LAD + Q+ ++L NAI FT + G+ + + Sbjct: 429 KSKSDQPLDFSLEIEPGLKQLLADELRLHQMLTHLLDNAIKFTQTEGKFGLKVNRW-EDW 487 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + DTG+G+ + F Q+ N + EGTGLGL L + + A+ G S Sbjct: 488 LAFTIWDTGIGIPEESQHLIFQKFQQLENPLTRQFEGTGLGLVLTQRLARAHGGDISFVS 547 Query: 797 TPAKGTLIEIIFP 809 +G+ ++ P Sbjct: 548 KAGQGSQFTLLLP 560 >gi|329890494|ref|ZP_08268837.1| sensory box protein [Brevundimonas diminuta ATCC 11568] gi|328845795|gb|EGF95359.1| sensory box protein [Brevundimonas diminuta ATCC 11568] Length = 539 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/268 (29%), Positives = 142/268 (52%), Gaps = 9/268 (3%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D+++ K + ++ AK+ AE KS+FLA +SHE+RTPLT++IGFS +++ P Sbjct: 133 IRDMTQRKTLEAEVLEAKETAEAAVQAKSEFLANMSHELRTPLTSVIGFSGLLQGSEHLP 192 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 P Y I + +L ++ND+LD SK+E+ + + EP V A ++++ Sbjct: 193 ---PEERIYVERIATASEALLGVINDILDYSKLEADAIEMDPEPFDTRALVDGAAAIIES 249 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 + K +++R A + P R+ D ++Q+ LN LSNA+ FT G++ ++ +E Sbjct: 250 QCSLKGLILRVVVAADTPARLTGDKGRLRQVMLNFLSNAVKFTAR-GEVTLTLDGRFDES 308 Query: 737 VILRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + R+R DTG+G+ ++ + F Q S GTGLGL +++ +V+ G+ Sbjct: 309 GLWRMRAAVSDTGIGIPPEKISELFHRFTQADASTTRVYGGTGLGLAISRRLVELMGGEI 368 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 + STP +G+ PL +D + Sbjct: 369 GVDSTPGQGSTFWFEAPLAVAEAENDAV 396 >gi|302342500|ref|YP_003807029.1| multi-sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] gi|301639113|gb|ADK84435.1| multi-sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] Length = 591 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 96/368 (26%), Positives = 174/368 (47%), Gaps = 44/368 (11%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLF-------GYPVEDILRKPFTVFLEQNT 505 +L ++L +G+ +++R+G ++ NRA+ L G + + +R P + + Sbjct: 256 RLEAMLRGMVEGVMVVDRDGRVMIANRALMTLLDLPSMPIGMQLSEFVRNPEVLDAIRQV 315 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS---LTMHDIS 562 H TE +L ++ + L +++ +LP S+ + HD++ Sbjct: 316 RRGEGHVSTEFRTL-------------SRAPRFLEAQVV--RLPDSAPQAGAVAVFHDLT 360 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E K +L ++ DF+A VSHE+RTPLTAI G SE + G L N Sbjct: 361 ERK----RLEEVRR----------DFVANVSHELRTPLTAIRGSSETLLG---GALENQH 403 Query: 623 YIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 Y + + I R+ + + + DLLD++ +ESG+ L E + ++ V A E Sbjct: 404 YAKHFVEMIARNASRLERLTQDLLDLAAMESGREELVKEAIDGASLADSVLATVGELAEE 463 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + + + RI+A R ++Q LN+L NAI +T SGG++ ++ T + I V Sbjct: 464 RGVELERELPKESLRIMASRRHLEQAVLNLLDNAIKYTESGGKVTLALTEAEGQTRI-SV 522 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +D+G G+ L + + F + + + GTGLGL + K + + G+ + STP +G Sbjct: 523 KDSGAGIAPEHLGRIFERFYRADKDRSRQMGGTGLGLAIVKHIAQKHGGRVEVESTPGQG 582 Query: 802 TLIEIIFP 809 + ++ P Sbjct: 583 STFTLVLP 590 >gi|300865030|ref|ZP_07109857.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300336967|emb|CBN55007.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1162 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 86/253 (33%), Positives = 143/253 (56%), Gaps = 20/253 (7%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI--KNQRFGP 617 DIS+ KQ + +L AK+ AE + KS FLA +SHE+RTPL +I+GF++++ +N Sbjct: 677 DISDRKQAELELRQAKEAAEAANQAKSVFLANMSHELRTPLNSILGFTQLMSYENNLTSS 736 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISL 674 L E I+RSG +LD++ND+LD+SKIESG+M L+ F+ ++L ++ E + Sbjct: 737 LQ-----ERLQIINRSGRHLLDLINDILDLSKIESGRMTLNPSDFDLINLLTSIEE---M 788 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +Q+ K + + + +P + D + + Q+ +N+LSNA+ FT G I + Sbjct: 789 LQVKVQSKSLQLIVERESELPNFVHTDEKKLYQVLVNLLSNALKFTQQGS-ITLRVRAEQ 847 Query: 734 NEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 E+ + V DTGVG+ E++K K F Q + +GTGLGL +++ +V Sbjct: 848 KEKHSCRLCFEVEDTGVGIAPTEIDKLFKVFVQAQAGNNL-SQGTGLGLAISQKLVQLMG 906 Query: 790 GKFYIFSTPAKGT 802 G+ + ST +G+ Sbjct: 907 GQIQVQSTLNRGS 919 >gi|158337906|ref|YP_001519082.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158308147|gb|ABW29764.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] Length = 888 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 132/242 (54%), Gaps = 14/242 (5%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK+ A+ ++ KS FLA +SHE+RTP+ A+IG + ++ N + + ++ I Sbjct: 360 LVQAKRDADTANTAKSQFLANMSHELRTPMNAVIGMTGLLLNTDL----DLQQADFVETI 415 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG+ +L ++ND+LD SKIE+GK+ +P L + +A+ +V A +K + + F Sbjct: 416 RSSGDALLSLINDILDFSKIEAGKLEFENQPFDLRICIEQALRIVAPRAVDKSLELAYLF 475 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--------- 740 + P I+ D+ ++QI +N+L+N + FT +G ++ T++ +R Sbjct: 476 EPDTPEWIIGDVTRLRQIIVNLLTNGVKFTDTGEVVVYIQDVTADHAAPVRKGHHILQIV 535 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+DTG+G+ +++ K F Q+ S + GTGLGL + + + G+ ++ S K Sbjct: 536 VKDTGIGIPADRMDRLFKSFSQVDASTTRKYGGTGLGLAICHRLCELMGGRMWVESDVGK 595 Query: 801 GT 802 G+ Sbjct: 596 GS 597 >gi|293610389|ref|ZP_06692690.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827621|gb|EFF85985.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 935 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 92/284 (32%), Positives = 154/284 (54%), Gaps = 24/284 (8%) Query: 526 EKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLS----------- 572 + + + ST E +LL I ++K+L FS L + + +E +E + + Sbjct: 220 QHMVINSTGELRLLQRDIANVVKRLHFSF---LELKEHTEQTEEDLRRTLDTLEVQNITY 276 Query: 573 -HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 A+ A + KS FLA +SHE+RTPL +I GF ++ Q+ L N + + Y I Sbjct: 277 RQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLNNEQNL-YLQTIR 333 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 +S +L ++ND+LD SKI++GK+ L P L+EAV + + ++ A +K I + +A Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393 Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVG 747 +NIP +++ D KQI N++SNAI FTP G I+ + H + +L V+D+G+G Sbjct: 394 DNIPQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIGQCLLHFSVQDSGIG 453 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 ++ + +K + F Q S + GTGLGL ++K +V G+ Sbjct: 454 LSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQ 497 >gi|167842294|ref|ZP_02468978.1| probable two-component sensor/regulator [Burkholderia thailandensis MSMB43] Length = 928 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/247 (32%), Positives = 133/247 (53%), Gaps = 13/247 (5%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + +L+ AK++AE + KS+ +A +SHEIRTPL I+G ++ + PR E Sbjct: 387 ERTRELNEAKRMAESANHSKSEHIASISHEIRTPLNGIMGALALLARSQL----QPRQQE 442 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 +S +L IVN++LD S+IE+G + L +E L + +A+ + L ANEK + Sbjct: 443 LVGVAQQSSGYLLGIVNNVLDYSRIEAGHLELAYEQTQLLPLLDQAMLTIHLRANEKHLT 502 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + T A ++P +I D V+QI +N+L NA+ FT G ++ + +I V DT Sbjct: 503 LSTFVAPDVPQQIWLDALRVRQILINLLGNAVKFTDFGSIRLVVERRGNRLAMI--VEDT 560 Query: 745 GVGM-TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 G G+ +Y+L+ KPF Q+ + G GLGLP+A + + G+ + S +GT Sbjct: 561 GKGIPPSYQLD-IFKPFVQV----RAHDSGNGLGLPIASRLANLMNGEILMSSQLGRGTQ 615 Query: 804 IEIIFPL 810 ++ PL Sbjct: 616 FTVLLPL 622 >gi|123441097|ref|YP_001005086.1| hybrid sensory histidine kinase BarA [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088058|emb|CAL10846.1| two-component regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 944 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ Q P +Y Sbjct: 277 ELGLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTR----QTLKTSLTPTQTDYLQT 332 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RS N +L I+ND+LD SK+E+ K+ L P SL A+ E I L+ A+EK + + Sbjct: 333 IQRSANNLLCIINDVLDFSKLEAEKLILEHIPFSLRGALDEVIILLAHTAHEKGLELTLH 392 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV--ILRVRDTG 745 ++P +++ D ++QI N+L NAI FT G I+++ ++++V ++ + DTG Sbjct: 393 VNKDVPEQVIGDAMRLQQIVTNLLGNAIKFTEQGNIDILVAVRAIASQQVTLVVEIHDTG 452 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++ + + + F Q S R GTGLGL + + +V G S +G+ Sbjct: 453 IGISESQQAQLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVDRGS 509 >gi|315054893|ref|XP_003176821.1| serine/threonine protein kinase [Arthroderma gypseum CBS 118893] gi|311338667|gb|EFQ97869.1| serine/threonine protein kinase [Arthroderma gypseum CBS 118893] Length = 2384 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 129/238 (54%), Gaps = 10/238 (4%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H K+ E + KS FLA +SH++RTP+T +IG SE++K + + + Y I Sbjct: 1874 HNVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKL----DAKQDVYVESIRV 1929 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 + +L ++ND+LD SK+E+GKM + P++L + ++E + ++ +K + + Sbjct: 1930 CADTLLTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHRDKGLTTVEDLVS 1989 Query: 693 NIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTGVG 747 P +L D + QI +N+LSN+ FTP+G + + E I +V DTG+G Sbjct: 1990 IDPNLLVMGDPVRLHQIFMNLLSNSYKFTPAGSVTVRAIIEEDTPEKIRMTCKVADTGIG 2049 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLI 804 ++ +L + +PF Q +S G+GLGL + KA++ D G+ ++ S +GT + Sbjct: 2050 ISEEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTV 2107 >gi|259156506|gb|ACV96450.1| multi-sensor hybrid histidine kinase [Vibrio cholerae Mex1] Length = 1268 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 106/394 (26%), Positives = 193/394 (48%), Gaps = 36/394 (9%) Query: 437 DVDTRINKRKMEIEVMQLC--SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL- 493 +++ ++ R EI + + SIL + I + EGII + N A KL GY E++L Sbjct: 369 ELEQQVALRTAEISRVNILQRSILSSAGYAIIATDEEGIITAFNPAAEKLLGYRAEEVLF 428 Query: 494 RKPFTVFLEQNTPSVMNHYLTEI-------LSLDLRQTLEKITLGSTKEEKLLSL----R 542 ++ ++F + P+ + H+ ++ +++ + K LG T + L Sbjct: 429 QQTPSIF---HLPAEVEHHAAKLTTELGSNIAVGFETLVAKARLGQTDNARWTYLTKTGE 485 Query: 543 IIIKKLPFSSC---------YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 + KL S+ + D+++ + + +L+ AK+ AE + KS+FLA +S Sbjct: 486 QVQVKLNVSALKDEQGQLAGFLGIAFDLTKQLKYEVELAQAKEQAESANKAKSEFLANMS 545 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HEIRTP+ ++G +++ N + R +Y + +L ++ND+LD SKIE+G Sbjct: 546 HEIRTPMNGVLGLLQLVANSTL----DQRQADYIEKAYSAAKSLLTLLNDILDFSKIEAG 601 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNIL 712 K+ L P SL + + + + A +K + + ++P +L D +KQ+ +N++ Sbjct: 602 KLELDPHPFSLTDLLQDIGLVFSSSAEQKGLEVLYDVTADVPEHLLGDSFRIKQVLINLV 661 Query: 713 SNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 NAI FT G+I+IS S E + ++DTG+G+T + F Q +S Sbjct: 662 GNAIKFTDK-GEILISIRSQSLPEGEINLSFSIKDTGIGITLEQQNALFSGFQQADSSIS 720 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 R GTGLGL ++K +V+ G+ + S G+ Sbjct: 721 RRYGGTGLGLAISKRLVNLMGGEIGVESEFGCGS 754 >gi|242238298|ref|YP_002986479.1| hybrid sensory histidine kinase BarA [Dickeya dadantii Ech703] gi|242130355|gb|ACS84657.1| Hpt sensor hybrid histidine kinase [Dickeya dadantii Ech703] Length = 918 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/238 (35%), Positives = 133/238 (55%), Gaps = 10/238 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + +K PL P +Y Sbjct: 273 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKT----PL-TPTQQDYLQ 327 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS N +L+I+ND+LD SK+E+GK+ L P SL + E + L+ A+EK + + Sbjct: 328 TIERSANNLLNIINDVLDFSKLEAGKLVLENIPFSLHNTLDEVVMLLAHTAHEKGLELTL 387 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDT 744 + +++P + + D ++QI N+L NAI FT G I I +V+L +++DT Sbjct: 388 NIQHDVPEQFIGDPLRLQQIITNLLGNAIKFTEQGNIDIRIEKRKQEQHQVLLEIQIKDT 447 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G+ + + + F Q S R GTGLGL + + +V G S +GT Sbjct: 448 GIGIAEIQQAQLFQAFRQADTSISRRHGGTGLGLVITQKLVREMGGDISFHSKLNQGT 505 >gi|218676813|ref|YP_002395632.1| Signal transduction histidine kinase [Vibrio splendidus LGP32] gi|218325081|emb|CAV26919.1| Signal transduction histidine kinase [Vibrio splendidus LGP32] Length = 1010 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/242 (33%), Positives = 129/242 (53%), Gaps = 7/242 (2%) Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 + A+ AE+ S KS FLA +SHEIRTP+ ++G + ++K+ PL + YA+ I+ Sbjct: 457 AKARNAAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLKDTGLDPLQSG----YADIIN 512 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 RSG +L I+ND+LD SKIE+G + + L + V + L++ A EK++ Sbjct: 513 RSGKNLLAILNDVLDYSKIEAGHLEIRTASFDLYQMVKDTYQLMEGRAAEKKLNFDFHIE 572 Query: 692 NNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMT 749 +N+ R D+ + QI N++ NAI FT +G I IS V+ V DTGVG+ Sbjct: 573 SNVQRYWRGDVTRISQILNNLVGNAIKFTETGSVDIFISLDIEDENRVMFEVSDTGVGID 632 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + E F Q + + G GTGLGL ++K+++ A G + S +G+ P Sbjct: 633 SKEQACLFDAFTQTGSGRNKTG-GTGLGLAISKSIMQAMNGDIGVHSEEGEGSQFWFSVP 691 Query: 810 LY 811 L+ Sbjct: 692 LF 693 >gi|153214510|ref|ZP_01949419.1| sensor histidine kinase/response regulator [Vibrio cholerae 1587] gi|124115312|gb|EAY34132.1| sensor histidine kinase/response regulator [Vibrio cholerae 1587] Length = 927 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQA-DYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L I+ND+LD SK+E+GK+ L P E + E ++L A+EK + I Sbjct: 331 TIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITL 390 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDT 744 IPR ++ D ++Q+ N++ N+I FT G + ++VI VRDT Sbjct: 391 KIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDT 450 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTF 510 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 511 WFTLRLHTTELP 522 >gi|317050263|ref|YP_004111379.1| PAS sensor protein [Desulfurispirillum indicum S5] gi|316945347|gb|ADU64823.1| PAS sensor protein [Desulfurispirillum indicum S5] Length = 1070 Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 99/364 (27%), Positives = 168/364 (46%), Gaps = 12/364 (3%) Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILS 518 A + I I+ +G V + GYP E++L R PF++ ++ V + + + Sbjct: 440 AAGEYIWEIDSDGCFTFLTDRVVDVLGYPAEELLGRSPFSLIPPEDAQKVQRVFSRIVRA 499 Query: 519 LDLRQTLEKITLGS-TKEEKLLSLRI----IIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 +++ + T+ ++ L I I+ Y DI+ K+ + L Sbjct: 500 ---QKSFSGFSYRCITRSGTIIWLEISGVPIVGPYGTVQGYRGVGLDITLRKRAEEALQE 556 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A++ AE S KS FLA +SHE+RTPL AI+G+SE+++ +G + I + Sbjct: 557 ARRQAEDSSQLKSMFLANMSHELRTPLNAILGYSEMLQEDA-AVMGAQEMVGDLAKIHSA 615 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +L ++ND+LDISKIE+GKM+++ E V++ V + + + + N Sbjct: 616 GEHLLRLINDVLDISKIEAGKMDVYLEEVNIARLVRDVADTITPLVRKNKNHFHLECGQN 675 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--EVILRVRDTGVGMTNY 751 + + DL V+QI N+L+NA FT +G + E + +V DTG+G+ Sbjct: 676 LGAMHTDLTKVRQILFNLLNNAAKFTQNGSITLRVQCQEDREIPTISFQVIDTGIGIEQQ 735 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 L + F Q S + GTGLGL ++++ G S P G+ + PL Sbjct: 736 RLSSLFQSFTQADVSISRKYGGTGLGLAISQSYSHLLGGGITAHSKPGAGSTFCLTLPLI 795 Query: 812 DTSH 815 H Sbjct: 796 RQPH 799 >gi|167839922|ref|ZP_02466606.1| two-component hybrid sensor and regulator, putative [Burkholderia thailandensis MSMB43] Length = 1084 Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 131/228 (57%), Gaps = 8/228 (3%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ + KS FLA +SHE+RTPL AI+G+++ + R + A+ I +SG +L Sbjct: 614 QEANRAKSIFLANMSHELRTPLNAILGYAQWFRRD---AAAGERQVRAASIIKQSGEHLL 670 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRI 697 ++ D+LD++KIE+GK++L P LD +S + ++++ + EK + A+++ P + Sbjct: 671 MLITDILDLAKIEAGKLDLCPGPAGLDGVLSSVMDIIRVKSEEKGLACVLDAASDLPPSV 730 Query: 698 LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELE 754 D + ++Q+ LN+L NA+ FT G ++ +S ++E +R VRDTGVG+ + L Sbjct: 731 WIDDKRLRQVLLNLLGNAVKFTSRGRVELRVSLLQPADELARVRFEVRDTGVGIAHDRLT 790 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 PF Q +Q R GTGLGL +++ +V G+ + S P G+ Sbjct: 791 SIFDPFEQAGEAQS-RAGGTGLGLSISRQLVRLMGGEIEVESEPGAGS 837 >gi|296272696|ref|YP_003655327.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM 7299] gi|296096870|gb|ADG92820.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM 7299] Length = 1183 Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/233 (33%), Positives = 123/233 (52%), Gaps = 6/233 (2%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK AE+ + KS+FLA +SHEIRTP+ IIG S + R N + Y I Sbjct: 473 LEIAKIKAEESTKAKSEFLANMSHEIRTPMNGIIGMSHLALQTRL----NDKQKNYIEKI 528 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 D +L+I+ND+LD SKIE+GK+NL +L E + ++++ EK + + S+ Sbjct: 529 DICAKNLLNILNDILDFSKIEAGKLNLEKVEFNLFETIENIVNIIDFSVYEKNLELVVSY 588 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 ++ + D + QI N+LSNAI FT + GQI + T ++DTG+G+T Sbjct: 589 GTDVGKNFYGDNLRLAQILTNLLSNAIKFT-NDGQIGVYITKIDINRYQFEIKDTGIGLT 647 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + K + F Q + GTGLGL ++K +++ GK ++ S G+ Sbjct: 648 EEQQTKLFQSFSQADGGTTRKYGGTGLGLTISKQLIELMNGKIWVESQINVGS 700 >gi|254415056|ref|ZP_05028819.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196178203|gb|EDX73204.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 2724 Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 85/248 (34%), Positives = 140/248 (56%), Gaps = 9/248 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K+ + +L+ AK AE + KS FLA +SHE+RTPL I+G+++++K Sbjct: 2242 DITELKKTEIELAQAKDAAEAANRAKSAFLASMSHELRTPLNGILGYAQILKTNSNLTQK 2301 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 IE I + G +L ++ND+LD+SK+E+GK+ L+ E + + +L A Sbjct: 2302 QKDGIE---IIHQCGEHLLTLINDILDLSKVEAGKLELYPEDFHFPSFLVGLCEIFRLKA 2358 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQI----IISTTHTSN 734 +K I + +IP+I+ D + ++QI +N+LSNA+ FT +G II +N Sbjct: 2359 IQKDITFNYNPPTHIPQIVHGDEKRLRQILMNLLSNAVKFTDTGTVTFTVNIIHKGQMTN 2418 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +++ +V DTG+GM+ +LEK PF QI + + EGTGLGL + K ++ + + Sbjct: 2419 DKIRFQVEDTGIGMSAEDLEKIFLPFEQIKETSR-HHEGTGLGLAITKKLIALMGSQIRV 2477 Query: 795 FSTPAKGT 802 S P G+ Sbjct: 2478 ESHPGVGS 2485 Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 7/133 (5%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 + ILE DGI ++ E I+ N+ ++FGY + IL + + L ++ + Sbjct: 1879 RFAGILEIAKDGIISVDSEQRIILFNQGAEQMFGYKADQILGQSLDLLLPPRAATIHRQH 1938 Query: 513 LTEILSL--DLRQTLEKITL-GSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQ 566 +T RQ E+ L G + + I KL + C ++ + DIS+ KQ Sbjct: 1939 VTNFAQYAGKARQMGERNELFGRRRNGTEFPMEASISKLDINGEIICTAI-LRDISDRKQ 1997 Query: 567 EKNKLSHAKKIAE 579 + LS K+I + Sbjct: 1998 AELALSQQKEILQ 2010 >gi|169634358|ref|YP_001708094.1| GacS-like sensor kinase protein [Acinetobacter baumannii SDF] gi|169153150|emb|CAP02235.1| GacS-like sensor kinase protein [Acinetobacter baumannii] Length = 935 Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 92/284 (32%), Positives = 154/284 (54%), Gaps = 24/284 (8%) Query: 526 EKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLS----------- 572 + I + S+ E +LL I ++K+L FS L + + +E +E + + Sbjct: 220 QHIVINSSGELRLLQRDIANVVKRLHFSF---LELKEHTEQTEEDLRRTLDTLEVQNITY 276 Query: 573 -HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 A+ A + KS FLA +SHE+RTPL +I GF ++ Q+ L N + + Y I Sbjct: 277 RQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLSNEQNL-YLQTIR 333 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 +S +L ++ND+LD SKI++GK+ L P L+EAV + + ++ A +K I + +A Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393 Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVG 747 +NIP +++ D KQI N++SNAI FTP G I+ + H + +L V+D+G+G Sbjct: 394 DNIPQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIGQCLLHFSVQDSGIG 453 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 ++ + +K + F Q S + GTGLGL ++K +V G+ Sbjct: 454 LSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQ 497 >gi|166364910|ref|YP_001657183.1| two-component hybrid histidine kinase [Microcystis aeruginosa NIES-843] gi|166087283|dbj|BAG01991.1| two-component hybrid histidine kinase [Microcystis aeruginosa NIES-843] Length = 669 Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 148/251 (58%), Gaps = 15/251 (5%) Query: 561 ISEWKQEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 I+E + E K L AK+ A K + KS+FLA +SHE+RTPL AI+GF+ +I R + Sbjct: 182 IAESRYEAEKELKEAKEAAVKANKAKSEFLANMSHELRTPLNAILGFTRLIS--RDSSIS 239 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQ 676 + Y +Y ++RSG +L+++ND+L++SKIE+G+ +F+ +L + ++E +++ Sbjct: 240 S-EYRQYLEIVNRSGEHLLELINDILEMSKIEAGRTVFNPSNFDLYALLDNIAE---MLR 295 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHT 732 A K + + ++++P+ I D ++Q+ +N+L N + FT SGG ++ + Sbjct: 296 SQAQAKALSLIFDRSSDLPQYICTDESKLRQVLINLLGNGLKFTESGGVTLRVKLGEKRE 355 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++ ++ + DTG+G+ E+ K +PF Q ++ + +GTGLGLP++K V+ G Sbjct: 356 DDQRLLWEIEDTGLGIAPEEIYKLFQPFNQTETGRKSQ-QGTGLGLPISKKFVELMGGAI 414 Query: 793 YIFSTPAKGTL 803 + S +G++ Sbjct: 415 GVSSILGQGSI 425 >gi|91975976|ref|YP_568635.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB5] gi|91682432|gb|ABE38734.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB5] Length = 880 Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/235 (31%), Positives = 135/235 (57%), Gaps = 10/235 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHEIRTP+ A++G + + + P R +E I SG+ +L I++D+ Sbjct: 340 KSNFLAMMSHEIRTPMNAVLGLASNLLETKLAP-EQRRAVEG---IHSSGDGLLKILDDI 395 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703 L+ S++E+G++++ S V +++ ++ A K + IRT ++N+P+ ++ D Sbjct: 396 LEYSRLEAGRLSIELITFSPINVVKQSLDMIGPRAAAKGLTIRTDLSDNLPQALIGDPGR 455 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR----DTGVGMTNYELEKAMKP 759 ++Q+ LN+LSNA+ FTPSG I+++ S++ R++ DTG+G+ ++E Sbjct: 456 IRQVLLNLLSNAVKFTPSG-TIVVAVNCVSDDRSTARIQWTVTDTGIGIDPDKIESLFDD 514 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 F Q NS + R G+GLGL +++ +++ G + STP G+ L TS Sbjct: 515 FVQADNSIRRRFGGSGLGLAISRRLIEQMGGSINVTSTPGVGSSFNFTLALAITS 569 >gi|298528945|ref|ZP_07016348.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510381|gb|EFI34284.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1209 Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 80/258 (31%), Positives = 132/258 (51%), Gaps = 22/258 (8%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 K A + A + S KS+FLA +SHEIRTP+ AI+G +E+ N P EY + Sbjct: 534 KYQEAARQAREASRAKSEFLANMSHEIRTPMNAIMGMTELAGNTEL----TPEQKEYLSI 589 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I S +L ++ND+LD SKIE+GK++L + SL E V A+ V + A++K + + Sbjct: 590 IQNSSESLLALLNDILDFSKIEAGKLDLEYIDFSLRETVHNAVYSVAMLAHQKGVELVVR 649 Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------------ 736 ++ D ++Q+ +N++ NAI FT G++ + + EE Sbjct: 650 VEPDMEDGFKGDPDRLRQVLVNLVGNAIKFTQQ-GEVQVEVRLAAAEEMLQHAARDEGYL 708 Query: 737 ----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++ RV DTG G+ + E + F Q S + + GTGLGL ++ +V+ G+ Sbjct: 709 SKLQILFRVVDTGSGIAWDKQEGIFEAFVQADGSSRRKYGGTGLGLSISSRLVEMMKGRI 768 Query: 793 YIFSTPAKGTLIEIIFPL 810 ++ S P +G+ + PL Sbjct: 769 WMQSEPGRGSTFSFVLPL 786 >gi|193076366|gb|ABO11027.2| GacS-like sensor kinase protein [Acinetobacter baumannii ATCC 17978] Length = 935 Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 92/284 (32%), Positives = 154/284 (54%), Gaps = 24/284 (8%) Query: 526 EKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLS----------- 572 + I + S+ E +LL I ++K+L FS L + + +E +E + + Sbjct: 220 QHIVINSSGELRLLQRDIANVVKRLHFSF---LELKEHTEQTEEDLRRTLDTLEVQNITY 276 Query: 573 -HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 A+ A + KS FLA +SHE+RTPL +I GF ++ Q+ L N + + Y I Sbjct: 277 RQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLSNEQNL-YLQTIR 333 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 +S +L ++ND+LD SKI++GK+ L P L+EAV + + ++ A +K I + +A Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393 Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVG 747 +NIP +++ D KQI N++SNAI FTP G I+ + H + +L V+D+G+G Sbjct: 394 DNIPQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIGQCLLHFSVQDSGIG 453 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 ++ + +K + F Q S + GTGLGL ++K +V G+ Sbjct: 454 LSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQ 497 >gi|16330590|ref|NP_441318.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] gi|1653081|dbj|BAA17998.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] Length = 950 Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/248 (33%), Positives = 134/248 (54%), Gaps = 16/248 (6%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + + L AK +AE + KS+FLA +SHEIRTP+ AIIG SE++ + Sbjct: 436 ELENSQESLLEAKLVAEGATKAKSEFLANMSHEIRTPMNAIIGMSELVLQTDL----TSQ 491 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y + +G L+L I+N++LD SK+E+GK+ L +P S++E + S++ + A K Sbjct: 492 QRNYLQKVQYAGELLLGIINNILDFSKMEAGKLELEQKPFSVEEVMGNLHSILGIQAEAK 551 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG-----GQIIISTTHTSNEE 736 + + IP IL D + QI +N+ +NA+ FT G GQ++ T NE+ Sbjct: 552 GLTLNFHLDPRIPPILVGDRLRLSQILINLGNNAVKFTNQGEITIRGQLL----KTENEQ 607 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 L+ V DTG+G+T + K + F Q S + GTGLGL ++K++ + G ++ Sbjct: 608 TKLQFSVTDTGIGLTPDQQSKLFQWFNQGETSTSRQYGGTGLGLAISKSLTELMGGDIWL 667 Query: 795 FSTPAKGT 802 S +G+ Sbjct: 668 ESVVGQGS 675 >gi|309791045|ref|ZP_07685581.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308226900|gb|EFO80592.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 883 Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 94/369 (25%), Positives = 175/369 (47%), Gaps = 27/369 (7%) Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 I R+ E E L ++L + DG+ + +R G I N A + G E +P + Sbjct: 537 IVARQREEEASTLLAMLRSIGDGVVVSDRNGTIQIINPAAEAILGITAEAFRGRPIS--- 593 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561 P V ++ + D L+K + + I + HD+ Sbjct: 594 --ELPGVP----AQLSAADAESRLQKFAVAERTVRSHYADVIASNGEILGGV--VVYHDM 645 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 + ++IA++ K++ +A SHE+RTP+T+I GF +++ FG + Sbjct: 646 TR-----------EEIADR---LKTELMATASHELRTPMTSIRGFVDMLMLGTFGEVSAT 691 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + E I + ++ ++++LLD+S++E+G+ L E + L E + + I+++ E Sbjct: 692 QR-EPLRVIKNNVVRLVVLIDELLDMSRVEAGEARLRREELDLAEVLRDVIAVLTSQFRE 750 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + I + F +P ++AD + ++QIA+N++ NA +TP GG + I H N E+ + V Sbjct: 751 REIELHVDFQEGLPHVVADRQRIEQIAVNLIGNACKYTPRGGTVWIG-MHNGNGELRVDV 809 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RDTGVG++ PF + N + GTGLGL + + +V+ + G+ + S G Sbjct: 810 RDTGVGISEEAKSHIFTPFYRADNPLRDEVGGTGLGLSITQRLVELHGGRIWFESEVNAG 869 Query: 802 TLIEIIFPL 810 + + P+ Sbjct: 870 STFSFVLPI 878 >gi|299133352|ref|ZP_07026547.1| PAS/PAC sensor signal transduction histidine kinase [Afipia sp. 1NLS2] gi|298593489|gb|EFI53689.1| PAS/PAC sensor signal transduction histidine kinase [Afipia sp. 1NLS2] Length = 834 Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 102/364 (28%), Positives = 167/364 (45%), Gaps = 15/364 (4%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT--- 514 L+ S+ +A+ G N ++L+ E + ++P +EQ + T Sbjct: 475 LDNLSEAVAVFGGNGRAQLFNPPFAQLWKLSTEALQQQPHIETIEQWCRPLFEDAATWQA 534 Query: 515 ---EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 I +D R L+ T K+ +L I LP + L D+++ + L Sbjct: 535 IRAAITGIDSRTALQ--TRIERKDGSVLDCTTI--PLPDGATM-LAFQDVTDSVNVERAL 589 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 E K DF+ VS+E+R+PLT IIGF+ + + GP+ + EY NYI Sbjct: 590 RERNDALEAADQMKVDFVHHVSYELRSPLTTIIGFAHFLSDPATGPM-TVKQSEYLNYIT 648 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 S N +L I+N++LD++ I +G M L PV L + V EA + +Q I + Sbjct: 649 TSTNALLAIINNILDLATINAGAMTLDLGPVDLRKTVEEATAGLQDRLVHDNIRLVIDID 708 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 + +AD R + QI N+L+NAI F+P+ G + ++ N + V D G G+ + Sbjct: 709 PSAAGFIADERRIVQIFYNLLANAIGFSPTNGTVRLNAWR-ENGLICCAVADAGPGIPDD 767 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 +K F N + R G GLGL L ++ V+ + G+ + S +GT + FP Sbjct: 768 VRDKVFDWFESRANGSRHR--GAGLGLSLVRSFVELHGGRVRVDSVVGEGTTVTCEFPAD 825 Query: 812 DTSH 815 T+H Sbjct: 826 QTAH 829 >gi|281204163|gb|EFA78359.1| histidine kinase [Polysphondylium pallidum PN500] Length = 1047 Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 100/361 (27%), Positives = 167/361 (46%), Gaps = 33/361 (9%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 + +SD + II+++G+I+ N +F E IL K PS+++ +L + Sbjct: 56 LFNISSDAL-IIHKDGVIMDANTTFETMFQVKTESILYK---------VPSLISEFLPDF 105 Query: 517 LSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 L + E + S E + +++K K KL A Sbjct: 106 EKLTHNNHSFETYGINSLGE----NFAVLVKVEHVKHNSDDIDIISVIDTSAKKKLIEAD 161 Query: 576 ---KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 + AE + K +FL VSHE+RTP+ I+ E+I+N N ++ + I Sbjct: 162 LALRKAEAINEAKINFLTTVSHEVRTPINGILASVEIIENTVL----NDTQRDFLSCIKD 217 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG +LD++ D+LD SKIE+GKM L ++ + EA+++V A E+ + I + Sbjct: 218 SGCYLLDLITDILDFSKIEAGKMELQKVEFNMITMLEEAMNIVYTTAQERDLEILLTVEE 277 Query: 693 NIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----------VILRV 741 ++P ++ D VKQ+ LN LSNAI FTP G I+ SN V V Sbjct: 278 SVPIVVIGDPYRVKQVLLNFLSNAIKFTPKGHVIVRVKLDKSNPNQDSSSLVDYTVCFEV 337 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G+G+ +++ F Q+ + Q + +GTGLGL ++K + G+ + S G Sbjct: 338 EDSGIGIKEEQMDSLFTAFLQLDGTSQRKNQGTGLGLSISKRLCQLMGGEITVRSKFGNG 397 Query: 802 T 802 + Sbjct: 398 S 398 >gi|240146650|ref|ZP_04745251.1| sensory transduction histidine kinase [Roseburia intestinalis L1-82] gi|257201194|gb|EEU99478.1| sensory transduction histidine kinase [Roseburia intestinalis L1-82] Length = 700 Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/259 (32%), Positives = 136/259 (52%), Gaps = 14/259 (5%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + KL + + AE+ + K+DFL R+SH+IRTP+ I G ++ + +GNP+ E Sbjct: 296 QKKLEKSVEQAEQANIAKTDFLRRMSHDIRTPINGIRGMVDICRYY----IGNPKKQEEC 351 Query: 628 -NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + I S ++++VND+LD++K+ESG++ L +P S+ E + E ++V + A E+ I + Sbjct: 352 LDKILLSSTFLMELVNDVLDMNKLESGQIKLEEKPFSISEILKEVETVVGMAATEQGITL 411 Query: 687 RTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--SNEEVILR--V 741 N +L V+QI NI SNA+ + G++I+ NE+ + Sbjct: 412 TVKKGEINHENLLGSSLHVRQILQNITSNAVKYNKPNGKVILECRELPPKNEKAVFEFVC 471 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D G+GM+ E A +PF Q +S + GTGLGL + K +V+ G + S P KG Sbjct: 472 TDNGIGMSPEFQEHAFEPFVQENSSARTSYTGTGLGLAIVKKLVEQMEGTIHFVSEPGKG 531 Query: 802 TLIEIIFPLYDTSHPHDCI 820 T ++ P P D I Sbjct: 532 TRFTLVIPFL----PDDSI 546 >gi|126640645|ref|YP_001083629.1| GacS-like sensor kinase protein [Acinetobacter baumannii ATCC 17978] Length = 906 Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 92/284 (32%), Positives = 154/284 (54%), Gaps = 24/284 (8%) Query: 526 EKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLS----------- 572 + I + S+ E +LL I ++K+L FS L + + +E +E + + Sbjct: 191 QHIVINSSGELRLLQRDIANVVKRLHFSF---LELKEHTEQTEEDLRRTLDTLEVQNITY 247 Query: 573 -HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 A+ A + KS FLA +SHE+RTPL +I GF ++ Q+ L N + + Y I Sbjct: 248 RQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLSNEQNL-YLQTIR 304 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 +S +L ++ND+LD SKI++GK+ L P L+EAV + + ++ A +K I + +A Sbjct: 305 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 364 Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVG 747 +NIP +++ D KQI N++SNAI FTP G I+ + H + +L V+D+G+G Sbjct: 365 DNIPQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIGQCLLHFSVQDSGIG 424 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 ++ + +K + F Q S + GTGLGL ++K +V G+ Sbjct: 425 LSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQ 468 >gi|169797173|ref|YP_001714966.1| GacS-like sensor kinase protein [Acinetobacter baumannii AYE] gi|215484636|ref|YP_002326871.1| Sensor protein gacS [Acinetobacter baumannii AB307-0294] gi|239500717|ref|ZP_04660027.1| Sensor protein gacS [Acinetobacter baumannii AB900] gi|260556077|ref|ZP_05828296.1| sensor protein gacS [Acinetobacter baumannii ATCC 19606] gi|301345776|ref|ZP_07226517.1| Sensor protein gacS [Acinetobacter baumannii AB056] gi|301511166|ref|ZP_07236403.1| Sensor protein gacS [Acinetobacter baumannii AB058] gi|301594979|ref|ZP_07239987.1| Sensor protein gacS [Acinetobacter baumannii AB059] gi|332856912|ref|ZP_08436321.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Acinetobacter baumannii 6013150] gi|332867184|ref|ZP_08437449.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Acinetobacter baumannii 6013113] gi|332874024|ref|ZP_08441959.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Acinetobacter baumannii 6014059] gi|20271376|gb|AAM18622.1|AF497904_1 GacS-like sensor kinase protein [Acinetobacter baumannii] gi|169150100|emb|CAM87994.1| GacS-like sensor kinase protein [Acinetobacter baumannii AYE] gi|213986830|gb|ACJ57129.1| Sensor protein gacS [Acinetobacter baumannii AB307-0294] gi|260410132|gb|EEX03431.1| sensor protein gacS [Acinetobacter baumannii ATCC 19606] gi|322506795|gb|ADX02249.1| barA [Acinetobacter baumannii 1656-2] gi|323516664|gb|ADX91045.1| GacS-like sensor kinase protein [Acinetobacter baumannii TCDC-AB0715] gi|332726966|gb|EGJ58471.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Acinetobacter baumannii 6013150] gi|332734123|gb|EGJ65255.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Acinetobacter baumannii 6013113] gi|332737765|gb|EGJ68657.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Acinetobacter baumannii 6014059] Length = 935 Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 92/284 (32%), Positives = 154/284 (54%), Gaps = 24/284 (8%) Query: 526 EKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLS----------- 572 + I + S+ E +LL I ++K+L FS L + + +E +E + + Sbjct: 220 QHIVINSSGELRLLQRDIANVVKRLHFSF---LELKEHTEQTEEDLRRTLDTLEVQNITY 276 Query: 573 -HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 A+ A + KS FLA +SHE+RTPL +I GF ++ Q+ L N + + Y I Sbjct: 277 RQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLSNEQNL-YLQTIR 333 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 +S +L ++ND+LD SKI++GK+ L P L+EAV + + ++ A +K I + +A Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYA 393 Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVG 747 +NIP +++ D KQI N++SNAI FTP G I+ + H + +L V+D+G+G Sbjct: 394 DNIPQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIGQCLLHFSVQDSGIG 453 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 ++ + +K + F Q S + GTGLGL ++K +V G+ Sbjct: 454 LSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQ 497 >gi|285018741|ref|YP_003376452.1| two-component system sensor-response regulator hybrid protein [Xanthomonas albilineans GPE PC73] gi|283473959|emb|CBA16460.1| putative two-component system sensor-response regulator hybrid protein [Xanthomonas albilineans] Length = 1370 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 107/365 (29%), Positives = 172/365 (47%), Gaps = 31/365 (8%) Query: 464 GIAII--NREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLD 520 G AII + EG I N A L GY + ++ RK +FL+ + +T + Sbjct: 497 GYAIIATDPEGTITLFNPAAETLLGYTAQAMIGRKATGLFLDPEQLAERAERMTIQSGIK 556 Query: 521 LRQTLEKI----TLGSTKEEK-------------LLSLRIIIKKLPFSSCYSLTMHDISE 563 ++ E I TLG + + LL+L + Y D++E Sbjct: 557 VQPAFESIAALSTLGRSDTREWTYVNKDGLALPVLLTLSTLRDDDERVIGYLGIAVDLTE 616 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 + + +L A AE + KSDFLA +SHEIRTP+ AI+G +++N P Sbjct: 617 QMRRERELRLAIDAAETANQSKSDFLANMSHEIRTPMNAILGMLYLLQNSEL-PQAAKDM 675 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 I+ D S +LDI+ND+LD SKIESG+++L EP L + + +L+ + K Sbjct: 676 IQKT---DISARALLDIINDILDFSKIESGRIDLESEPFDLSQLLENIATLMTTAISAKP 732 Query: 684 I-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV----- 737 + +I + D + Q+ +N++ NAI FT G++ +S + EV Sbjct: 733 VEMIVEPLPKGCRWLRGDALRLNQVLVNLVGNAIKFTEQ-GEVTLSVRAFPSPEVGKIKL 791 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + VRDTG+G+ + PF Q S R G+GLGL +++ +V+ G+ + ST Sbjct: 792 MFSVRDTGIGIPREKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGQLEVQST 851 Query: 798 PAKGT 802 P +G+ Sbjct: 852 PNRGS 856 >gi|153803093|ref|ZP_01957679.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-3] gi|229521281|ref|ZP_04410701.1| BarA sensory histidine kinase [Vibrio cholerae TM 11079-80] gi|124121375|gb|EAY40118.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-3] gi|229341813|gb|EEO06815.1| BarA sensory histidine kinase [Vibrio cholerae TM 11079-80] Length = 927 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQA-DYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L I+ND+LD SK+E+GK+ L P E + E ++L A+EK + I Sbjct: 331 TIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITL 390 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDT 744 IPR ++ D ++Q+ N++ N+I FT G + ++VI VRDT Sbjct: 391 KIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDT 450 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTF 510 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 511 WFTLRLHTTELP 522 >gi|313205098|ref|YP_004043755.1| pas/pac sensor hybrid histidine kinase [Paludibacter propionicigenes WB4] gi|312444414|gb|ADQ80770.1| PAS/PAC sensor hybrid histidine kinase [Paludibacter propionicigenes WB4] Length = 912 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 104/389 (26%), Positives = 186/389 (47%), Gaps = 39/389 (10%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TVFLEQNTP-------- 506 S++EA+ D + IN EG I N A K+ G E+I+ F F E + Sbjct: 259 SLIEASRDPLFTINLEGKITDLNNASVKITGMSREEIIGTDFFDYFTEPDKAKEVYKDVF 318 Query: 507 ----------SVMNHYLTEIL-----SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 ++ + LT++L D R ++ + + + + + I +L + Sbjct: 319 ANGFVTDFPLTIRDGKLTDVLFNGSVYKDDRGNVQGVVVVA---RDITDQKKIETQLNEA 375 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 ++ +I+E K K + +IAE K FL+ +SHEIRTP+ AI+GF++V+ Sbjct: 376 IVFAEMATEIAEIA--KTKAESSTQIAETAVKAKQQFLSNMSHEIRTPMNAIVGFTKVLL 433 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + EY + I SG+ ++ ++ND+LD++K+++GKM P ++ ++S Sbjct: 434 KSEL----TAKQKEYLSAIKMSGDALIVLINDILDLAKVDAGKMVFEKIPFKMELSISAM 489 Query: 672 ISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + L + EK + + + IP +L D + QI LN++SNA+ FT G+I +S Sbjct: 490 LHLFETKILEKNLKLVVDYDKTIPDVLVGDPVRLHQIILNLMSNAVKFT-GKGKIYVSVR 548 Query: 731 HTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 SN + V ++DTG+G++ ++ K + F Q + GTGLGL + K +V+ Sbjct: 549 LLSNNDDSASVQFSIKDTGIGISEEKIGKIFENFQQASSGTSRLYGGTGLGLAIVKQLVE 608 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 + G ++ S +G+ TS Sbjct: 609 SQGGSIHVTSEINEGSTFSFTLNFQRTSQ 637 >gi|292492086|ref|YP_003527525.1| PAS sensor protein [Nitrosococcus halophilus Nc4] gi|291580681|gb|ADE15138.1| PAS sensor protein [Nitrosococcus halophilus Nc4] Length = 914 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 122/241 (50%), Gaps = 4/241 (1%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L H ++ ++ K++FLA + HE+R PL I E+++ P + I + I Sbjct: 532 LVHIQEALKETDRCKNEFLAMLGHELRNPLAPICNAVELMRMHLHHPAIQSKSI---DII 588 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 DR + +VNDLL++++I +GK+NL +PV L E V +A+ Q R + S Sbjct: 589 DRQAKHLTRLVNDLLNVARIVTGKINLKTQPVELKEVVMQAVETAQPAIESARHELTLSL 648 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 ++ AD + QI N+L+NA+++TPSGG I + + E I+RVRD GVG+ Sbjct: 649 PAQPLKVEADPVRLVQIVANLLNNAVNYTPSGGHIQLQVAQSQEGEAIIRVRDNGVGILP 708 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 +L F Q S G GLGL L + + + GK + S P +G+ I P Sbjct: 709 EKLPYIFDIFTQADRSLDQAQSGLGLGLTLVHRLTEMHGGKAFALSEGPGRGSEFTIHLP 768 Query: 810 L 810 L Sbjct: 769 L 769 >gi|237748048|ref|ZP_04578528.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes OXCC13] gi|229379410|gb|EEO29501.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes OXCC13] Length = 796 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 93/286 (32%), Positives = 145/286 (50%), Gaps = 22/286 (7%) Query: 542 RIIIKKLPFS------SCYSLTMHDISEW---KQEKNKLSHAKKIAEKESSHKSDFLARV 592 R+ KK+ FS + T DI+E +Q+K L A A + KS+FL+R+ Sbjct: 230 RLAYKKIRFSFYDRSHNILLATRTDITEIINERQQKKLLQDALNAANVANRAKSEFLSRM 289 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGN-PRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 SH+IRTP+ AIIG + + L N R + I S L+L ++N++LD++KIE Sbjct: 290 SHDIRTPMNAIIGMTAIAGAH----LANQERMSDCLQKITTSSRLLLSLINEVLDMAKIE 345 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQ--LYANEKRILIRTSFANNIPRILADLRSVKQIAL 709 SG++ L E V+L + V+ +S++Q L R + F + ++ D + ++Q+ L Sbjct: 346 SGRIILSEEEVNLGDLVTSLLSMIQPDLKKKGHRFDVHL-FNIDEEWVICDSQRIQQVLL 404 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIP 764 N LSNAI +TP G I+ T + E RD G+GMT LEK +PF + Sbjct: 405 NFLSNAIKYTPDNGHIVFEITQLPSSENGFGKYRFIFRDNGIGMTPGFLEKVFEPFERAD 464 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +GTGLG+ +AK + + G + S KGT + P+ Sbjct: 465 EVSIQSIQGTGLGMAIAKNIAEIMGGHIGVESEHGKGTTFTLTIPM 510 >gi|222084231|ref|YP_002542757.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] gi|221721679|gb|ACM24835.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] Length = 824 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 105/395 (26%), Positives = 192/395 (48%), Gaps = 25/395 (6%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 +N E D++TR N + V+Q +I + S+G+A+ +G I +N A L + + Sbjct: 441 ENLTEQVDLETRYNT----LVVVQGETI-DHLSEGVAVFGPDGRIRLSNPAFRIL--WNI 493 Query: 490 EDILRKPFT---VFLEQNTPSV-----MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 +I KP T E PS + +I S D + + TL E +L Sbjct: 494 TEIQAKPGTHIQTLAEACAPSYDRPDGWKRFAEQITSFDDERPSSQGTL-----ELYSNL 548 Query: 542 RIIIKKLPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 + +P + + LT + ++ + + L+ + K K+DF+ VS+E+R+PL Sbjct: 549 VLDYAVIPLPNAQTMLTFVNKTDSVRAERALTEKNEALLKADELKNDFVQHVSYELRSPL 608 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 T IIGF++++K G L N R EY ++I S ++L +VND+LD++ +++G M L++ Sbjct: 609 TNIIGFTDLLKTPGIGSL-NDRQAEYIDHISTSSAVLLTLVNDILDLATVDAGIMRLNYS 667 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 ++LD+ + E + E + + + ++ ++AD + +KQI L +L+NA +F P Sbjct: 668 EIALDDLLDEVSMQIADRLQESGVTLEITVPAHLGSVVADQQRLKQILLKLLTNAANFAP 727 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 G I + + + V D G G++ + F + + + G GLGL + Sbjct: 728 EGSTIALKCGRDGT-DFVFSVADKGPGISEEIMRTVFNRFAS--SGKGGKRSGAGLGLSI 784 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 ++ V + G+ I S P KGT + P ++ H Sbjct: 785 VESFVSLHDGQVSIESQPGKGTTVNCRIPSAESPH 819 >gi|260171368|ref|ZP_05757780.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|315919679|ref|ZP_07915919.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|313693554|gb|EFS30389.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 637 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 91/264 (34%), Positives = 135/264 (51%), Gaps = 16/264 (6%) Query: 549 PFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 PF L + HDI + +L AK+ AE KS FLA +SHEIRTPL AI+GFS Sbjct: 247 PFEGNRVLALIHDIGDRILRSQELIEAKRRAEDADKMKSVFLANMSHEIRTPLNAIVGFS 306 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 E+I G EY I R+ NL+L ++ND+LD+S+IESGK +HF+ V + Sbjct: 307 EIIAVTE----GEEEKREYLEIIQRNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGL 362 Query: 668 VSEA--ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 V E + +++ +N + +IR D V Q+ N LSNAI T G I Sbjct: 363 VEEVEKVHQLKMKSNVELKVIRPEGEYWTS---TDRNRVMQVLFNFLSNAIKNTEKGS-I 418 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + H + L V DTG G++ +L + F ++ + Q GTGLGL + K++V Sbjct: 419 TLGLKH-EGPWLKLYVSDTGCGISKEKLPQIFTRFEKLNDFVQ----GTGLGLSICKSIV 473 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + G+ + S +G++ + P Sbjct: 474 ERLGGRIEVTSELGQGSVFALYLP 497 >gi|225390426|ref|ZP_03760150.1| hypothetical protein CLOSTASPAR_04179 [Clostridium asparagiforme DSM 15981] gi|225043482|gb|EEG53728.1| hypothetical protein CLOSTASPAR_04179 [Clostridium asparagiforme DSM 15981] Length = 760 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 91/298 (30%), Positives = 148/298 (49%), Gaps = 18/298 (6%) Query: 523 QTLEKIT---LGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKI 577 Q +E IT + S LL+ I+ F + YS + I E K + +L A + Sbjct: 190 QLMEDITHTTVASIGTALLLTFFIV-----FLTMYSNMVERTSIKELKARERELHEALLL 244 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A+K ++ K DFL+R+SHEIRTP+ AIIG + I G R + I S + Sbjct: 245 AQKANNAKKDFLSRMSHEIRTPMNAIIGMA-AIAGAHLDDRG--RIEDCLTKITFSSRHL 301 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPR 696 L ++ND+LD+SKI++GK+ ++ EP + + +S++ A + + + R Sbjct: 302 LSLINDVLDMSKIDAGKLTVNHEPFRIGQLTESVVSVIDSQARTQEKIFECDISGIRQER 361 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYE 752 ++ D V QI LN+LSN++ FTP GG I + +++ + V DTG+GM+ Sbjct: 362 LIGDYLRVNQILLNLLSNSVKFTPRGGMIRLEIKEIEDQKGRTFLQFVVSDTGIGMSEEF 421 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 LE+ PF Q + GTGLG+ + +V+ G + S +GT+ + P Sbjct: 422 LERLYLPFEQADGQISQKYGGTGLGMAITNNLVELLGGSIDVKSRLGEGTVFTVKLPF 479 >gi|121728971|ref|ZP_01681975.1| sensor histidine kinase/response regulator [Vibrio cholerae V52] gi|147673482|ref|YP_001217955.1| hybrid sensory histidine kinase BarA [Vibrio cholerae O395] gi|153826897|ref|ZP_01979564.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-2] gi|121628737|gb|EAX61204.1| sensor histidine kinase/response regulator [Vibrio cholerae V52] gi|146315365|gb|ABQ19904.1| sensor histidine kinase/response regulator [Vibrio cholerae O395] gi|149739260|gb|EDM53522.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-2] gi|227014345|gb|ACP10555.1| sensor histidine kinase/response regulator [Vibrio cholerae O395] Length = 927 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQA-DYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L I+ND+LD SK+E+GK+ L P E + E ++L A+EK + I Sbjct: 331 TIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITL 390 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDT 744 IPR ++ D ++Q+ N++ N+I FT G + ++VI VRDT Sbjct: 391 KIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDT 450 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTF 510 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 511 WFTLRLHTTELP 522 >gi|330720537|gb|EGG98819.1| Sensor protein torS [gamma proteobacterium IMCC2047] Length = 995 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 80/241 (33%), Positives = 130/241 (53%), Gaps = 8/241 (3%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A+K AE+ S K+ FLA +SHEIRTP+ I+G ++ RY + N I+ + Sbjct: 476 ARKQAEQASRAKTTFLAMMSHEIRTPMNGILGTLRLLDKTSLSE--KQRY--FTNIINSA 531 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 +LDI+ND+LD S I++GK+ + P L V E I+L+ A EK + ++ +F + Sbjct: 532 SRSLLDILNDVLDFSSIDAGKIEVGQLPFDLHALVDEVITLMAPTAEEKGLYLKATFDTD 591 Query: 694 IPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILRVRDTGVGMT 749 I R L D ++Q+ LN+++NAI FT GG ++ ++T +N E+ L + DTG+G+ Sbjct: 592 IDRPLKGDPSKLRQVLLNLITNAIKFTQQGGVELRVNTQEVANHHVELHLEIIDTGIGID 651 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +E +PF Q+ S + G GLGL + + ++ A G GT + + Sbjct: 652 ESMMEAVFEPFTQVNTSLTKKEGGIGLGLAICQRLMMAMGGTIEASRAAHGGTCMAVQLT 711 Query: 810 L 810 L Sbjct: 712 L 712 >gi|325927602|ref|ZP_08188832.1| putative periplasmic ligand-binding sensor domain [Xanthomonas perforans 91-118] gi|325542036|gb|EGD13548.1| putative periplasmic ligand-binding sensor domain [Xanthomonas perforans 91-118] Length = 1191 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/246 (32%), Positives = 133/246 (54%), Gaps = 8/246 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S K+ FLA + HE+RTP+T ++G SE++ PL + R YA+ I Sbjct: 799 HKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQT---PL-DGRQQGYASAIQL 854 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 +G +L +VND LD+++IE+GK+ L + L + V + + LV+ A +K++ + Sbjct: 855 AGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQKQLAFQCELDE 914 Query: 693 NIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTT--HTSNEEVILRVRDTGVGMT 749 +P L D V+QI LN+L NA+ FT G + TT + + + + VRDTG GM+ Sbjct: 915 ALPPALHGDASRVQQILLNLLFNAVKFTERGSVHLRLTTLPQYTRQGLRVEVRDTGPGMS 974 Query: 750 NYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + + F Q + + R G+GLGL + + + A G + S +G + Sbjct: 975 AEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGAVTVTSELGQGACFVVEL 1034 Query: 809 PLYDTS 814 PL+ S Sbjct: 1035 PLHWVS 1040 >gi|262377433|ref|ZP_06070656.1| GacS-like sensor kinase [Acinetobacter lwoffii SH145] gi|262307663|gb|EEY88803.1| GacS-like sensor kinase [Acinetobacter lwoffii SH145] Length = 935 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 91/285 (31%), Positives = 155/285 (54%), Gaps = 26/285 (9%) Query: 526 EKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLS----------- 572 + + + ST E +LL I ++K+L FS L + + +E ++ + + Sbjct: 219 QHMVINSTGELRLLQRDIANVVKRLHFSF---LELREHTEQTEDDLRRTLDTLEVQNITY 275 Query: 573 -HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 A+ A + KS FLA +SHE+RTPL +I GF ++ Q G L N + + Y I Sbjct: 276 RQARDQAISANQAKSVFLANISHELRTPLNSIDGFIHLLLRQ--GNLSNEQSL-YLQTIR 332 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 +S +L ++ND+LD SKI++GK+ L P L+EA+ + + ++ A +K I + +A Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIDMAFYYA 392 Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--HTSNEEVILR--VRDTGV 746 + +P+ I+ D KQI N++SNAI FTP G+II+ H ++ +L V+D+G+ Sbjct: 393 DGVPKHIIGDALRFKQILTNLISNAIKFTPD-GEIIVRARMEHDGMDQCVLHFSVQDSGI 451 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 G++ + +K + F Q S + GTGLGL ++K +V G+ Sbjct: 452 GLSGTDRKKLFESFSQGDTSVTRQFGGTGLGLAISKQLVSLMHGQ 496 >gi|239623884|ref|ZP_04666915.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521915|gb|EEQ61781.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 1293 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 90/264 (34%), Positives = 130/264 (49%), Gaps = 24/264 (9%) Query: 563 EWKQEKNKLSH----------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 +W QE+ KL K A+ S K+DFL+R+SHEIRTP+ AI G + + KN Sbjct: 881 QWSQEQRKLLKELVRIVPSFVMKSKADAVSKAKTDFLSRMSHEIRTPMNAISGMTTIAKN 940 Query: 613 ---QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 R L IE AN +LD++ND+LD+S+IESGKM L P+ L + + Sbjct: 941 VLDDREKTLDCLEKIESAN------TYLLDLINDILDMSRIESGKMELSTSPMDLRQQID 994 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 +L + A EK + +R + R+L AD + Q+ +NI+ NA+ FT GG + Sbjct: 995 GLEALFRTQAEEKHLDMRFENRYSSTRLLIADGLRLNQVLINIIGNAVKFTEQGGITVKV 1054 Query: 729 TTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + +LR V DTG+G+ L++ F Q GTGLGL +A +V Sbjct: 1055 EQLEESPRAVLRFSVADTGIGIEPSALDRIFNAFEQAEAGTAASYGGTGLGLSIASRLVQ 1114 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPL 810 G + S KG+ E F L Sbjct: 1115 MMGGTLEVSSQIGKGS--EFFFTL 1136 >gi|254444664|ref|ZP_05058140.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198258972|gb|EDY83280.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 810 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 144/256 (56%), Gaps = 15/256 (5%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 +M D+++ K+++ L A+ AE + KS FLA +SHEIRTP+ ++G + ++ + + Sbjct: 266 SMTDVTQRKRDEQALQVARDKAESANRAKSQFLAVMSHEIRTPMNGVMGMAALLASTKL- 324 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + Y I+ SG +L+I++++L SK+E+G + L ++ E ++ A+ ++ Sbjct: 325 ---DEEQSAYLRTIESSGESLLNIIDEVLSFSKLEAGNIELEQNAFNIGECLTSALQIIS 381 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS------- 728 A EK + + + +++P +++ D +KQ+ +N+L NA+ FT G+I + Sbjct: 382 PMAKEKGLELILNIDSSLPLQVIGDESKIKQVLVNLLGNAVKFT-HAGEIELRAKAENHE 440 Query: 729 --TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 TT + + + L VRDTG+G++ ++ +PF Q S R GTGLGL +++++++ Sbjct: 441 DPTTGENTKLIKLTVRDTGIGISPDAIKSLFEPFTQEDASTTRRYGGTGLGLAISRSLLE 500 Query: 787 ANMGKFYIFSTPAKGT 802 G I S P +G+ Sbjct: 501 LMGGAIEIDSAPGEGS 516 >gi|331652019|ref|ZP_08353038.1| TMAO reductase sytem sensor TorS [Escherichia coli M718] gi|331050297|gb|EGI22355.1| TMAO reductase sytem sensor TorS [Escherichia coli M718] Length = 914 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 137/250 (54%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 432 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 487 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP +L E+ + L+ + I + Sbjct: 488 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRTLLEST---LQLMSGRVKGRPIRLA 544 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT GQI++ + T E+ ++ V D+G Sbjct: 545 TAIADDVPTALMGDPRRIRQVITNLLSNALRFTDK-GQIVLR-SRTDGEQWLVEVEDSGC 602 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 603 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 658 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 659 RLPLRVATAP 668 >gi|225390145|ref|ZP_03759869.1| hypothetical protein CLOSTASPAR_03895 [Clostridium asparagiforme DSM 15981] gi|225043798|gb|EEG54044.1| hypothetical protein CLOSTASPAR_03895 [Clostridium asparagiforme DSM 15981] Length = 852 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 87/278 (31%), Positives = 150/278 (53%), Gaps = 27/278 (9%) Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 +II L F +S+T + + ++L A++ A + + KS+FLA +SH+IRTP+ A Sbjct: 310 LIILTLIFLRYFSIT-------RSQLHELEKARQAALEANKAKSEFLANMSHDIRTPMNA 362 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I+G + + + + + ++ I S +L ++ND+LD+SKIESGK+ L E Sbjct: 363 IVGMTAIATAH----IDDRKQVQNCLRKITLSSKHLLGLINDVLDLSKIESGKLTLTIEQ 418 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-----ADLRSVKQIALNILSNAI 716 +SL E + +S++Q K+ +F ++ IL D + QI LN+LSNA Sbjct: 419 ISLKEVIEGIVSIMQPQVKAKK----QNFDIHVENILTENVWCDGVRLNQILLNLLSNAT 474 Query: 717 HFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 +TP GG I +S + + + + ++V+D G+GM+ L+K + + + ++ + Sbjct: 475 KYTPEGGSIQLSLSEEKSPKGENYVRISIKVKDNGIGMSPDFLKKIYESYSRADGTRVHK 534 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 EG GLG+ + K +VDA G I S P KGT ++F Sbjct: 535 TEGAGLGMAITKYIVDAMEGTIDIQSEPDKGTEFFLMF 572 >gi|15642449|ref|NP_232082.1| hybrid sensory histidine kinase BarA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153819819|ref|ZP_01972486.1| sensor histidine kinase/response regulator [Vibrio cholerae NCTC 8457] gi|153823739|ref|ZP_01976406.1| sensor histidine kinase/response regulator [Vibrio cholerae B33] gi|227082574|ref|YP_002811125.1| sensor histidine kinase/response regulator [Vibrio cholerae M66-2] gi|229507487|ref|ZP_04396992.1| BarA sensory histidine kinase [Vibrio cholerae BX 330286] gi|229512318|ref|ZP_04401797.1| BarA sensory histidine kinase [Vibrio cholerae B33] gi|229519454|ref|ZP_04408897.1| BarA sensory histidine kinase [Vibrio cholerae RC9] gi|229606992|ref|YP_002877640.1| hybrid sensory histidine kinase BarA [Vibrio cholerae MJ-1236] gi|254849577|ref|ZP_05238927.1| sensor histidine kinase/response regulator [Vibrio cholerae MO10] gi|298500190|ref|ZP_07009995.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK 757] gi|9657030|gb|AAF95595.1| sensor histidine kinase/response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126509638|gb|EAZ72232.1| sensor histidine kinase/response regulator [Vibrio cholerae NCTC 8457] gi|126518744|gb|EAZ75967.1| sensor histidine kinase/response regulator [Vibrio cholerae B33] gi|227010462|gb|ACP06674.1| sensor histidine kinase/response regulator [Vibrio cholerae M66-2] gi|229344143|gb|EEO09118.1| BarA sensory histidine kinase [Vibrio cholerae RC9] gi|229352283|gb|EEO17224.1| BarA sensory histidine kinase [Vibrio cholerae B33] gi|229354992|gb|EEO19913.1| BarA sensory histidine kinase [Vibrio cholerae BX 330286] gi|229369647|gb|ACQ60070.1| BarA sensory histidine kinase [Vibrio cholerae MJ-1236] gi|254845282|gb|EET23696.1| sensor histidine kinase/response regulator [Vibrio cholerae MO10] gi|297540883|gb|EFH76937.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK 757] Length = 927 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQA-DYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L I+ND+LD SK+E+GK+ L P E + E ++L A+EK + I Sbjct: 331 TIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITL 390 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDT 744 IPR ++ D ++Q+ N++ N+I FT G + ++VI VRDT Sbjct: 391 KIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDT 450 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTF 510 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 511 WFTLRLHTTELP 522 >gi|188533372|ref|YP_001907169.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Erwinia tasmaniensis Et1/99] gi|188028414|emb|CAO96275.1| Sensor kinase protein (Capsular synthesis regulator component C) [Erwinia tasmaniensis Et1/99] Length = 951 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 137/255 (53%), Gaps = 7/255 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L K AE+ S KS FLA VSHE+RTPL IIG +++K + P G Sbjct: 447 DVSARVKMEQSLHEIAKEAEQASESKSMFLATVSHELRTPLYGIIGNLDLLKTKAL-PAG 505 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 506 AESLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLAMV 562 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +KR+ + +++P ++ D ++Q+ N+L+NAI FT +GG II + + + Sbjct: 563 VKKRLTLWCFINSDVPVLMEGDPMRLQQVISNLLNNAIKFTHTGG--IILQVYVKGDYLT 620 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 VRD+GVG++ EL + PF Q+ + Q +GTGLGL + + +++ G + S P Sbjct: 621 FCVRDSGVGISAKELTRLFDPFVQVGSGVQRNFQGTGLGLAICEKLMNMMDGDIEVDSEP 680 Query: 799 AKGTLIEIIFPLYDT 813 G+ + PLY++ Sbjct: 681 DMGSQFVVRIPLYNS 695 >gi|189423629|ref|YP_001950806.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419888|gb|ACD94286.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 893 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 136/258 (52%), Gaps = 8/258 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DISE KQ + L AK++AE S K++ LA +SHE+RTPL ++G ++++ Sbjct: 486 TLQDISEHKQIEELLISAKEMAEATSRAKTELLATLSHELRTPLNGVMGGVQLLEMTDL- 544 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + EY + S L +VNDLLD++ +E+ + + P +L E++ AI+L + Sbjct: 545 ---SADQEEYLQMVRTSATNELALVNDLLDLAGLEASGLKVESTPFNLLESIKLAITLHR 601 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 + + + TS ++ + ++ D R + QI N+L NAI FT GG + T Sbjct: 602 SALETRGLPLVTSLPESLAQLVIGDGRRLTQIVSNLLGNAIKFTEQGGISLAADCTPCGG 661 Query: 735 EEVILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 E+ L+VR DTG+G+ +L++ +PF Q S R GTGLGL + + + G Sbjct: 662 SELRLQVRVSDTGIGIAEKDLQRIFEPFVQADMSSTRRFGGTGLGLAICHRLAERMGGSI 721 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S P +G+ + P Sbjct: 722 RVDSIPGEGSSFTLELPF 739 >gi|237729749|ref|ZP_04560230.1| sensory histidine kinase [Citrobacter sp. 30_2] gi|226908355|gb|EEH94273.1| sensory histidine kinase [Citrobacter sp. 30_2] Length = 918 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 132/237 (55%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + N ++ N Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTEL----NTTQRDHLNT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + + ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTG 745 N++P ++ D ++Q+ N++ NAI FT G I++ SN +V + V RDTG Sbjct: 394 IKNDVPDNVIGDPLRLQQVITNLVGNAIKFTEGGNIDILVEKRALSNTKVQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V+ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 510 >gi|149278244|ref|ZP_01884382.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] gi|149231010|gb|EDM36391.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] Length = 1198 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 80/248 (32%), Positives = 132/248 (53%), Gaps = 17/248 (6%) Query: 566 QEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KNQRFGPLGNPRY 623 QE+N+ + + E+ + +KS+FLA +SHE+RTPL +I+ S+++ +N+ + Y Sbjct: 511 QERNQDIQQKAEQLEQSTKYKSEFLANMSHELRTPLNSILLLSKLMSENKDL----DKEY 566 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 IEYA I SG +L +++++LD+SKIE+GKM L F V++DE ++ S+ A K+ Sbjct: 567 IEYAEVIQSSGQGLLGLIDEILDLSKIEAGKMKLEFASVNIDEVSTDMRSMFSPLAKNKQ 626 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + IP + D ++QI N+LSNAI FT G + S + V V D Sbjct: 627 LQFAVEVEERIPEVETDKMRLEQILKNLLSNAIKFTTQGKVSLTVKKDDSGKFVQFTVTD 686 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-----------DANMGKF 792 TG+G+ + + F Q S + + GTGLGL +++ + N+G Sbjct: 687 TGIGIATDKQGLIFEAFQQADGSTRRKFGGTGLGLSISRELAKILGGEIELTSKENVGSS 746 Query: 793 YIFSTPAK 800 + FS P + Sbjct: 747 FTFSLPVR 754 >gi|37520808|ref|NP_924185.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35211803|dbj|BAC89180.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 713 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/275 (30%), Positives = 146/275 (53%), Gaps = 8/275 (2%) Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLS-HAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 I+ +L + ++ + E +Q L+ A++ AE + K +FLA +SHE+RTPL Sbjct: 443 IVVQLAQMASVAIENARLFEAEQTARALAEQARREAEAANRAKDEFLAVLSHELRTPLNP 502 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 IIGF+++++ + + R +E I+R+G L +++D+LD+S+I SGKM + V Sbjct: 503 IIGFAQLLRRKSGLSAADYRALE---TIERNGRLQAQLIDDVLDVSRIISGKMRVELRAV 559 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 L V+ AI V+ A K I + + + AD ++Q+ N+L+NAI FTP G Sbjct: 560 DLLPVVAAAIEAVRSPAELKGICLSGRLDDGATAV-ADPTRMQQVVWNLLTNAIKFTPEG 618 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 G+++I + +++RV D+G+G++ L + F Q + + G GLGL + + Sbjct: 619 GRVVIDLCR-GDRTLLIRVSDSGIGISPDFLPYVFERFRQADGTSTRKHSGLGLGLAIVR 677 Query: 783 AMVDANMGKFYIFSTP-AKGTLIEIIFPLYDTSHP 816 +V+ + G S +GT + PLY T P Sbjct: 678 HIVELHGGAVSAQSDGVGQGTTFCVELPLY-TCEP 711 >gi|284046954|ref|YP_003397294.1| multi-sensor signal transduction histidine kinase [Conexibacter woesei DSM 14684] gi|283951175|gb|ADB53919.1| multi-sensor signal transduction histidine kinase [Conexibacter woesei DSM 14684] Length = 1010 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 130/239 (54%), Gaps = 8/239 (3%) Query: 575 KKIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 K+ AE E+ K++F A VSHE+RTPLT+I+G+ E++ G + N + ++R+ Sbjct: 749 KRAAEAEADRLKNEFFALVSHELRTPLTSIVGYVELVLEGEVGEV-NDEQARFLGIVERN 807 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G + +V DLL ++++E+G +NL +L+ V +A+ + A + + + + Sbjct: 808 GKRLQRLVGDLLFVAQVEAGTLNLEHGDATLEAIVRDAVDGARPRAEQVGVTV-AAETEP 866 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 +P I D + Q+ N++SNA+ FTPSGG + + T +EV L V DTG+G+ E Sbjct: 867 VPPIRGDADRLGQLVDNLISNALKFTPSGGDVTV-TLRIDGDEVALAVADTGIGIPADEQ 925 Query: 754 EKAMKPFGQIPNSQQIRGE--GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F S + GE G GLGL + +A+ + + G+ + S +GT ++ PL Sbjct: 926 ARLFDRF--FRASTAVEGEIPGIGLGLSICQAIAEGHGGRIEVESEVGRGTTFRVVLPL 982 >gi|229514079|ref|ZP_04403541.1| BarA sensory histidine kinase [Vibrio cholerae TMA 21] gi|229349260|gb|EEO14217.1| BarA sensory histidine kinase [Vibrio cholerae TMA 21] Length = 927 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQA-DYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L I+ND+LD SK+E+GK+ L P E + E ++L A+EK + I Sbjct: 331 TIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITL 390 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDT 744 IPR ++ D ++Q+ N++ N+I FT G + ++VI VRDT Sbjct: 391 KIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDT 450 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTF 510 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 511 WFTLRLHTTELP 522 >gi|254291653|ref|ZP_04962441.1| sensor histidine kinase/response regulator [Vibrio cholerae AM-19226] gi|150422425|gb|EDN14384.1| sensor histidine kinase/response regulator [Vibrio cholerae AM-19226] Length = 927 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQA-DYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L I+ND+LD SK+E+GK+ L P E + E ++L A+EK + I Sbjct: 331 TIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITL 390 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDT 744 IPR ++ D ++Q+ N++ N+I FT G + ++VI VRDT Sbjct: 391 KIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDT 450 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTF 510 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 511 WFTLRLHTTELP 522 >gi|297581077|ref|ZP_06943002.1| sensor histidine kinase/response regulator [Vibrio cholerae RC385] gi|297534903|gb|EFH73739.1| sensor histidine kinase/response regulator [Vibrio cholerae RC385] Length = 927 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQA-DYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L I+ND+LD SK+E+GK+ L P E + E ++L A+EK + I Sbjct: 331 TIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITL 390 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDT 744 IPR ++ D ++Q+ N++ N+I FT G + ++VI VRDT Sbjct: 391 KIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDT 450 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTF 510 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 511 WFTLRLHTTELP 522 >gi|268324757|emb|CBH38345.1| conserved hypothetical protein, histidine kinase family and response regulator receiver family [uncultured archaeon] Length = 406 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 128/234 (54%), Gaps = 5/234 (2%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ + KS+FL+ SHE+RTPLT + ++I G L N + + R+ + Sbjct: 161 EEITRMKSEFLSITSHELRTPLTPMKAQLQMILEGYVGEL-NDNQKKSLEVVLRNITKLG 219 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++D+LD+S+IE+G++ L F+PV+++ V EAI + A K I I T A+ +P I+ Sbjct: 220 KLIDDILDLSRIEAGRIKLAFKPVNINSIVKEAIITQESSATSKDIEISTKLAD-LPDIV 278 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVILRVRDTGVGMTNYELEK 755 D + Q+ N+L+NAI F+ G++II T E V+ + D G+G++ + +K Sbjct: 279 GDPERIGQVIGNLLNNAIKFSKKSGKVIIETKCLDIEGKENVLFSITDYGIGISKADHKK 338 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 KPF QI S GTGLGL + + ++ A+ GK +I S GT P Sbjct: 339 LFKPFSQIDTSLGREQAGTGLGLAIVRGIIHAHRGKVWIDSESGNGTTFYFTIP 392 >gi|255936613|ref|XP_002559333.1| Pc13g09080 [Penicillium chrysogenum Wisconsin 54-1255] gi|211583953|emb|CAP91977.1| Pc13g09080 [Penicillium chrysogenum Wisconsin 54-1255] Length = 2272 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 135/251 (53%), Gaps = 17/251 (6%) Query: 566 QEKNKLSHAK-----KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ++K K++ A+ K+ E + KS FLA +SH++RTP+ +IG SE++K G + Sbjct: 1809 EQKAKIAEAEAKHNVKLKEDAARAKSIFLANISHDLRTPMNGVIGLSELLK----GTYLD 1864 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 EY I + +L ++ND+LD SK+E+GKM + P++L + +SE I ++ Y + Sbjct: 1865 KEQDEYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNLKQTISEVIRALR-YTH 1923 Query: 681 EKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSN 734 R L + +P +L D + QI +N+LSN+ FTP+G + ++ T Sbjct: 1924 RDRGLETIENLDKVPPELVVLGDPVRLHQIFMNLLSNSYKFTPAGSVTVKARVAREGTGR 1983 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFY 793 + V DTG+G+ + + + +PF Q S + G+GLGL + KA++ D G + Sbjct: 1984 VRLECSVSDTGIGIPDEQKARLFRPFSQADASTERSYGGSGLGLSICKAIIEDVLGGAIW 2043 Query: 794 IFSTPAKGTLI 804 + S P GT + Sbjct: 2044 LESKPGVGTTV 2054 >gi|254423730|ref|ZP_05037448.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196191219|gb|EDX86183.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 774 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 139/252 (55%), Gaps = 18/252 (7%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D+SE + L A++ AE S KS FLA +SHEIRTP+ A++G +E++++ Sbjct: 211 IEDVSEQHRVNAALKAAQQEAEVASKSKSSFLAMMSHEIRTPMNALLGMAELLESTAL-- 268 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + E+ + I SG +L I+ND+LD SK+ESG + L + L E + + + L Sbjct: 269 --TVQQKEFVSIIRSSGKTLLTIINDILDFSKVESGNLVLEEGYLDLYECIEDVLILFSN 326 Query: 678 YANEKRILIRTSFA-NNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A+EK +++ + +P + D ++QI N++SN+I FT G +I I T + E Sbjct: 327 QADEKSLMLSSLVEPATMPTVFTGDPVRMRQILSNLISNSIKFTKKG-EISIHVTISPIE 385 Query: 736 -----------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 ++ V+DTG+G+ ++L+K KPF Q+ +S + GTGLGL + K + Sbjct: 386 AEALSEKRSYYQLQFAVKDTGIGIPKHKLDKLFKPFSQVDSSVTRKHGGTGLGLSICKRL 445 Query: 785 VDANMGKFYIFS 796 V+ G+ ++ S Sbjct: 446 VELMGGQMWVES 457 >gi|255746876|ref|ZP_05420821.1| BarA sensory histidine kinase [Vibrio cholera CIRS 101] gi|262162041|ref|ZP_06031057.1| BarA sensory histidine kinase [Vibrio cholerae INDRE 91/1] gi|255735278|gb|EET90678.1| BarA sensory histidine kinase [Vibrio cholera CIRS 101] gi|262028290|gb|EEY46947.1| BarA sensory histidine kinase [Vibrio cholerae INDRE 91/1] Length = 916 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 265 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQA-DYLQ 319 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L I+ND+LD SK+E+GK+ L P E + E ++L A+EK + I Sbjct: 320 TIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITL 379 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDT 744 IPR ++ D ++Q+ N++ N+I FT G + ++VI VRDT Sbjct: 380 KIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDT 439 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 440 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTF 499 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 500 WFTLRLHTTELP 511 >gi|327484945|gb|AEA79352.1| BarA sensory histidine kinase [Vibrio cholerae LMA3894-4] Length = 916 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 265 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQA-DYLQ 319 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L I+ND+LD SK+E+GK+ L P E + E ++L A+EK + I Sbjct: 320 TIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITL 379 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDT 744 IPR ++ D ++Q+ N++ N+I FT G + ++VI VRDT Sbjct: 380 KIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDT 439 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 440 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTF 499 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 500 WFTLRLHTTELP 511 >gi|313683119|ref|YP_004060857.1| hpt sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] gi|313155979|gb|ADR34657.1| Hpt sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] Length = 758 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 89/272 (32%), Positives = 135/272 (49%), Gaps = 21/272 (7%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 FS L I + +QE S AK+ FL+ +SHEIRTPL AI+GF + Sbjct: 129 FSGVLKLYTDTIYQKEQEAINASKAKEY----------FLSNMSHEIRTPLNAILGFVSL 178 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 ++++ NPRY +Y + I SG +L I+ND+LD SK+ SG+ + +P ++ + +S Sbjct: 179 LRDET----TNPRYQQYLDIISNSGENLLHIINDILDFSKLRSGEFMIDPQPFNIHDEIS 234 Query: 670 EAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 + L AN K I + + I I+AD +KQI N LSNAI F+ G I + Sbjct: 235 HTMELFVPGANSKNITLTSFIDPTIAYEIVADALRIKQIVGNFLSNAIKFSHHAGAIHVE 294 Query: 729 TTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 +E ++ L VRD G+G+ + E+ F Q G+GLGL + K + Sbjct: 295 A--RCDEGILSLSVRDQGIGIVLADQERIFDAFSQAQEGSMKVNGGSGLGLSICKQLAHH 352 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 G + ST KG+L + P+ H+C Sbjct: 353 MGGVIELESTVGKGSLFTLKIPVVVN---HEC 381 >gi|121591384|ref|ZP_01678667.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae 2740-80] gi|121546763|gb|EAX56935.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae 2740-80] Length = 727 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQA-DYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L I+ND+LD SK+E+GK+ L P E + E ++L A+EK + I Sbjct: 331 TIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITL 390 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDT 744 IPR ++ D ++Q+ N++ N+I FT G + ++VI VRDT Sbjct: 391 KIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDT 450 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTF 510 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 511 WFTLRLHTTELP 522 >gi|166712857|ref|ZP_02244064.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 1191 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 132/243 (54%), Gaps = 10/243 (4%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S K+ FLA + HE+RTP+T ++G SE++ PL + R YA+ I Sbjct: 799 HKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQT---PL-DGRQQGYASAIQL 854 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 +G +L +VND LD+++IE+GK+ L + L + V + LV+ A +K++ + + Sbjct: 855 AGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVAELVRPSAEQKQLAFHCALDD 914 Query: 693 NIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGM 748 +P L D V+QI LN+L NA+ FT G +I + HT + + + VRDTG GM Sbjct: 915 ALPPALRGDASRVQQILLNLLFNAVKFTERGSVHLRIAVLPQHT-QQGIRVEVRDTGPGM 973 Query: 749 TNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + + + F Q + + R G+GLGL + + + A G + S +G + Sbjct: 974 SAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGSVTVSSELGQGACFVVE 1033 Query: 808 FPL 810 PL Sbjct: 1034 LPL 1036 >gi|328951841|ref|YP_004369175.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452165|gb|AEB07994.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 1121 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/258 (32%), Positives = 136/258 (52%), Gaps = 18/258 (6%) Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 S A+ AE + KS FLA +SHEIRTP+ +IG + ++ + PL N E+ I Sbjct: 471 SEARTAAEAANEAKSTFLATMSHEIRTPMNGVIGMTNLLLDT---PL-NEEQREFCETIR 526 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 SG +L I+ND+LD SKIE+GKM L +P L E + A+ L+ A +K + + Sbjct: 527 GSGEALLTIINDILDFSKIEAGKMELEHQPFDLRECLESALDLIVTPAQQKGLELVYHVD 586 Query: 692 NNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--------VILR-- 740 +P +A D+ ++QI LN+L+NA+ FT G+I ++ + ++LR Sbjct: 587 KQVPATIAGDVTRLRQILLNLLNNAVKFTEQ-GEISLTVRGEDGPDAAALPPGSMLLRFS 645 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS--TP 798 V D+G+G+ L + + F QI S + GTGLGL ++K + + G+ ++ S P Sbjct: 646 VADSGIGIPPDRLNRMFQSFSQIDASTTRKYGGTGLGLAISKRLSEMMGGRLWVESKGVP 705 Query: 799 AKGTLIEIIFPLYDTSHP 816 KG+ ++ + P Sbjct: 706 GKGSTFHLLIRTEPVAMP 723 >gi|229527059|ref|ZP_04416454.1| BarA sensory histidine kinase [Vibrio cholerae 12129(1)] gi|229335456|gb|EEO00938.1| BarA sensory histidine kinase [Vibrio cholerae 12129(1)] Length = 927 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQA-DYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L I+ND+LD SK+E+GK+ L P E + E ++L A+EK + I Sbjct: 331 TIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITL 390 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDT 744 IPR ++ D ++Q+ N++ N+I FT G + ++VI VRDT Sbjct: 391 KIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDT 450 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTF 510 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 511 WFTLRLHTTELP 522 >gi|154147903|ref|YP_001406226.1| sensor histidine kinase/response regulator [Campylobacter hominis ATCC BAA-381] gi|153803912|gb|ABS50919.1| sensor histidine kinase/response regulator [Campylobacter hominis ATCC BAA-381] Length = 1385 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 128/241 (53%), Gaps = 16/241 (6%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 +++ K+ AE + KS FLA +SHEIRTPL +IGF+E+++N + +Y + I Sbjct: 391 VTYQKEAAEDANKAKSIFLANMSHEIRTPLNGVIGFTELLRNTEL----DEEQQDYVDTI 446 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRILIR 687 ++S +L I+N++LD+SKIES K+ L F P+ E+ A+ + A EK I I Sbjct: 447 EQSSENLLTIINNILDVSKIESNKVELEDILFNPIQDFES---AVEIYVAKATEKNIDIL 503 Query: 688 TSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVI-LRV 741 I + D+ +K++ +N++SNA+ FTP GG I + NE + V Sbjct: 504 LYIDPTLIHHLYGDITKIKEVLINLMSNAVKFTPEGGMIAVEIVRVKSDNPNEATVNFSV 563 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTGVG+ +L F Q ++ + GTGLGL ++ V GK + ST KG Sbjct: 564 EDTGVGIAEDKLVNVFNAFSQADSTITRKYGGTGLGLTISSKYVAMMGGKLEVKSTLGKG 623 Query: 802 T 802 T Sbjct: 624 T 624 >gi|94969439|ref|YP_591487.1| histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94551489|gb|ABF41413.1| histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 603 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 127/231 (54%), Gaps = 2/231 (0%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ S K+ FL+ +SHE RTPL +II S+++ ++ G LG+ + + YI RS + +L Sbjct: 217 QRTSELKTRFLSNMSHEFRTPLNSIISLSQLLLDRVDGDLGSEQE-KQVTYIRRSADTLL 275 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++VNDLLD++KIE+GK+ ++ ++ +++ + + A I + Sbjct: 276 ELVNDLLDLAKIEAGKVTVYPNEFRVNALFGALRGMLRPLLTNPEVSLTFEDAPEIGVLW 335 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 D V QI N +SNA+ FT GG++ ++ ++ VI VRD+G+G+ + + + Sbjct: 336 TDESKVSQILRNFISNALKFT-QGGEVAVTARLGQHDTVIFSVRDSGIGIAKSDQVRVFE 394 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F QI N+ Q R +GTGLGLPL K + G + S KG++ I P Sbjct: 395 EFTQIENALQRRNKGTGLGLPLTKKFAELLGGSVSLESETGKGSVFSAIIP 445 >gi|71907206|ref|YP_284793.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71846827|gb|AAZ46323.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 841 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 82/242 (33%), Positives = 137/242 (56%), Gaps = 11/242 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KNQRFGPLGNPRY 623 ++ +LS A+ AE + KS FLA +SHE+RTPL A+IGFS+++ K+ P+ R Sbjct: 371 RERTEELSVARDQAEAANQSKSAFLANMSHELRTPLNAVIGFSQLMEKDPGLLPV-QQRN 429 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 +E N+ SG +L ++ND+L++SKIESGK+ + E L + + + ++ L A + Sbjct: 430 LEIINH---SGRHLLTLINDILELSKIESGKLRMTTEETDLRLLLEQVVEMMHLRAQQLG 486 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR-- 740 + ++ N P I+ D +QI LN+LSNA+ FTP G + ++ S ++ +R Sbjct: 487 LQLKLETTNLPPLIVIDPGMFRQILLNLLSNALKFTPKGEVCLHVAAEAVSAQQSRIRFS 546 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 VRDTG+G++ + E+ F Q+ Q GTGLGL +++ V+ G+ + S Sbjct: 547 VRDTGIGISENDRERIFSSFEQVGPMHQ---GGTGLGLTISRRYVEMLGGELSVDSELGN 603 Query: 801 GT 802 G+ Sbjct: 604 GS 605 >gi|209523540|ref|ZP_03272094.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209495945|gb|EDZ96246.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1355 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/276 (28%), Positives = 145/276 (52%), Gaps = 28/276 (10%) Query: 549 PFSSCYSLTMHDISEW-------KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 PF + + +++W +Q +LS A+ A + KS+FLA +SHEIRTP+ Sbjct: 627 PFRAVDQELLKLMAQWIGSEIERQQTAQELSQARDEALAATRAKSEFLATMSHEIRTPMN 686 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 A+IG + ++ + + ++ I S + +L ++ND+LD SKIESGK++L P Sbjct: 687 AVIGMTGLLLDTPLSLVQQ----DFVETIRSSSDALLSLINDILDFSKIESGKLDLEAFP 742 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720 SL + E++ L+ A K + + P ++ D+ V+QI +N+LSNA+ FT Sbjct: 743 FSLRTCLEESLDLLATKAASKSLELGYFIDAYTPNEVVGDMARVRQILVNLLSNAVKFT- 801 Query: 721 SGGQIIISTT---------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 + G++++S + ++++ ++ + V DTG+G+ + + K F Q+ Sbjct: 802 ARGEVLVSVSAKPLFSDLELTAKSMYSTHYQIEVAVSDTGIGIPVDRMNRLFKSFSQVDA 861 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 S + GTGLGL +++ + + GK ++ S A G Sbjct: 862 STNRQYGGTGLGLAISQRLAEMMGGKMWVVSGDAIG 897 >gi|144897852|emb|CAM74716.1| Signal transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 844 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 81/242 (33%), Positives = 134/242 (55%), Gaps = 7/242 (2%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 + A+ AE+ S KS+FLA +SHE+RTPL IIGF+E+IK+ + E A Sbjct: 605 QRAEEARLRAEEASRMKSEFLASMSHELRTPLNGIIGFAELIKDD----AADEEMRENAE 660 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++SG+ +L++VN +LD++KIE+G M L E V + V+E ++ Q A+ K + + Sbjct: 661 IIEKSGSHLLNLVNTILDVAKIEAGAMTLARETVDIRTLVTEVAAIHQSGADAKGLDFQV 720 Query: 689 SFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 A+++ P ++ D V+Q+ N+LSNA+ FT +G + + + V++RV D+G G Sbjct: 721 QLADDLPPALVTDPVRVRQVLHNLLSNAVKFTQAG--RVHTVVAADKDSVVIRVIDSGPG 778 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +K + F Q GTGLGL LA+ +V+ G+ + S +G+ Sbjct: 779 IALDLQDKIFEKFHQGDAFLTRSHGGTGLGLTLARHLVELMGGEMSLESQVGQGSTFVFT 838 Query: 808 FP 809 P Sbjct: 839 LP 840 >gi|117925226|ref|YP_865843.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117608982|gb|ABK44437.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 791 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 139/260 (53%), Gaps = 10/260 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ K+ + +L A+ AE + KS+FLA +SHEIRTP+ AI+G SE++ G Sbjct: 355 DITARKKLERELQQARDRAESSNRAKSEFLALMSHEIRTPMNAILGMSELLAESNLS--G 412 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R E R+ +LD++ND+LD+S++ESG++ L P+ L + E L + A Sbjct: 413 EQR--ELLTVQRRAALALLDLINDILDLSRVESGRLELDHAPMHLPDFFIEIQDLFRQQA 470 Query: 680 NEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +K + + +++P+ AD ++Q+ +N++ NAI FT GG + IS S + + Sbjct: 471 IKKNLAFSITLEDDLPKTYFADRARLRQVMINLVGNAIKFTQQGG-VWISVERLSQQGEM 529 Query: 739 LRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 ++++ D+G G+ + + +PF Q GTGLGL +++ +V G + Sbjct: 530 VKLKFSVVDSGCGIPSEAQSQIFEPFTQADAYVTRHHGGTGLGLTISQRLVQLFGGTLQV 589 Query: 795 FSTPAKGTLIEIIFPLYDTS 814 STP +G+ I L T+ Sbjct: 590 ESTPNQGSRFSFILILQVTT 609 >gi|299771551|ref|YP_003733577.1| Sensor protein gacS [Acinetobacter sp. DR1] gi|298701639|gb|ADI92204.1| Sensor protein gacS [Acinetobacter sp. DR1] Length = 935 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 91/284 (32%), Positives = 154/284 (54%), Gaps = 24/284 (8%) Query: 526 EKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLS----------- 572 + + + ST E +LL I ++K+L FS L + + +E +E + + Sbjct: 220 QHLVINSTGELRLLQRDIANVVKRLHFSF---LELKEHTEQTEEDLRRTLDTLEVQNITY 276 Query: 573 -HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 A+ A + KS FLA +SHE+RTPL +I GF ++ Q+ L N + + Y I Sbjct: 277 RQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLNNEQNL-YLQTIR 333 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 +S +L ++ND+LD SKI++GK+ L P L+EA+ + + ++ A +K I + +A Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAMAFYYA 393 Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVG 747 +NIP+ ++ D KQI N++SNAI FTP G I+ + H + +L V+D+G+G Sbjct: 394 DNIPQEVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIGQCLLHFSVQDSGIG 453 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 ++ + +K + F Q S + GTGLGL ++K +V G+ Sbjct: 454 LSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQ 497 >gi|296446569|ref|ZP_06888511.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] gi|296255923|gb|EFH03008.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] Length = 848 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 122/225 (54%), Gaps = 4/225 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 ++DF+ VS+E+R+PL IIGFS ++ + G L N + +EY +Y+ +S +L I+ND+ Sbjct: 606 RNDFVHHVSYELRSPLNNIIGFSHLLGEKSTGEL-NAKQLEYLSYVGKSSAALLAIINDI 664 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD++ I+S M L V +++A+ A VQ E I ++ ++ D + + Sbjct: 665 LDLATIDSDAMALELGDVDVEDAMRAAAEGVQDRLAENTIELKIVATGDVGCFRGDAKRI 724 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +QI N+LSNAI F+ G I ++ E++L+V D G G+ LEK F Sbjct: 725 RQILFNLLSNAIGFSRPGQTITLAALRREG-EIVLKVADRGRGIAPEALEKVFDRFES-- 781 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ R G GLGL + +A + + G+ I S +GT + IFP Sbjct: 782 HTAGSRHRGVGLGLSIVRAFTELHGGRVLIDSALGEGTTVTCIFP 826 >gi|262274843|ref|ZP_06052654.1| signal transduction histidine kinase [Grimontia hollisae CIP 101886] gi|262221406|gb|EEY72720.1| signal transduction histidine kinase [Grimontia hollisae CIP 101886] Length = 808 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 100/377 (26%), Positives = 178/377 (47%), Gaps = 24/377 (6%) Query: 441 RINKRKMEIEVM----QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 RIN++ ++ E + Q+ +I++ D I I+ G I + N A LFGY +++ + Sbjct: 311 RINEQNIKEERLSGQSQVQAIVDTVVDSIITIDAHGYIATFNPAAEGLFGYRATEVIGQK 370 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSS-- 552 + + S + YL ++ + + + +G K+ + + + ++ S Sbjct: 371 INILMPPPFASEHDSYLENFMNGKQAKIIGIGREVVGMRKDGSIFPAELSVSEMRVSGNP 430 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 ++ + DI+ K K+ + K++F+A VSHE+RTPLT+I G +I Sbjct: 431 MFTGIIRDITSRK--------------KDEAMKNEFVATVSHELRTPLTSIRGALGIILG 476 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + G L + + L L ++ND+LDI K+ESG M HF +L ++ +I Sbjct: 477 KFSGELPDKTQKMLTLALRNCERLTL-LINDILDIEKLESGAMLYHFNRCNLYSIIARSI 535 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 YA +I + I AD ++Q+ N+LSNAI ++ SGG++ + T Sbjct: 536 EDNTGYAKHHQITVTFESDTETAYINADSTRMQQVMANLLSNAIKYSKSGGEVNV-TLEN 594 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + + + D G G+ E F Q +S R GTGLGL +AK++++A+ G+ Sbjct: 595 NGSSFRVEITDHGAGIPPEFHEHLFTRFSQADSSDTRRVGGTGLGLAIAKSIIEAHKGQL 654 Query: 793 YIFSTPAKGTLIEIIFP 809 + FS P +G P Sbjct: 655 HFFSVPKQGATFFFTVP 671 >gi|262167284|ref|ZP_06034994.1| BarA sensory histidine kinase [Vibrio cholerae RC27] gi|262024259|gb|EEY42950.1| BarA sensory histidine kinase [Vibrio cholerae RC27] Length = 916 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 265 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQA-DYLQ 319 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L I+ND+LD SK+E+GK+ L P E + E ++L A+EK + I Sbjct: 320 TIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITL 379 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDT 744 IPR ++ D ++Q+ N++ N+I FT G + ++VI VRDT Sbjct: 380 KIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDT 439 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 440 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTF 499 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 500 WFTLRLHTTELP 511 >gi|170736607|ref|YP_001777867.1| Hpt sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3] gi|254249296|ref|ZP_04942616.1| Signal transduction histidine kinase [Burkholderia cenocepacia PC184] gi|124875797|gb|EAY65787.1| Signal transduction histidine kinase [Burkholderia cenocepacia PC184] gi|169818795|gb|ACA93377.1| Hpt sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3] Length = 1011 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 124/228 (54%), Gaps = 6/228 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTPL A++G E++ P N R + + + ++LD++N++ Sbjct: 526 KSTFLATISHEIRTPLNAMLGNLELLDK---APDRN-REKSRLHAVTSAARMLLDMLNNV 581 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703 LD++KIE+ +M L +DE + + L + A K + +R R + D Sbjct: 582 LDMTKIEADRMTLEATSFRIDELARDIVELFEPIARAKGVALRVDVDAQAARPYVGDPLR 641 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQ 762 V+QI +N++SNAI FT G + T ++ V++RV D+G+GMT +LE +PF Q Sbjct: 642 VRQIVVNLVSNAIKFTDRGTVALSVTAPVADGTPVMIRVSDSGIGMTAAQLEHVFEPFAQ 701 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 S R GTG+GLPL+ + ++ G+ + S P G+ + PL Sbjct: 702 ADESIARRFGGTGIGLPLSNKLAESMGGRIAVDSVPNVGSTFVVSLPL 749 >gi|27364942|ref|NP_760470.1| hybrid sensory histidine kinase BarA [Vibrio vulnificus CMCP6] gi|27361088|gb|AAO09997.1| BarA sensory histidine kinase (= VarS = GacS) [Vibrio vulnificus CMCP6] Length = 928 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 139/252 (55%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQ-TDYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L+I+ND+LD SK+E+GK+ L P E++ E ISL A+EK + I Sbjct: 331 TIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVISLQATSAHEKGLEITL 390 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDT 744 IP ++ D ++Q+ N++ N+I FT G + + S + + L+ V+DT Sbjct: 391 KIDPRIPEGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRAQSGDSIDLQFMVKDT 450 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTF 510 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 511 WFTLRLHSTQMP 522 >gi|83311055|ref|YP_421319.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82945896|dbj|BAE50760.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 514 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 82/260 (31%), Positives = 133/260 (51%), Gaps = 8/260 (3%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + T DI++ K+ + L HAK AE+ + K++FLA +SHEIRTP+ ++G ++ Sbjct: 118 FVTTYTDITDRKRAERMLIHAKDKAEETARLKANFLATMSHEIRTPMNGVLGMLHLLTGS 177 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 PL P ++ S +L I+ND+LD SK+E+G+M L L + E ++ Sbjct: 178 ---PL-TPDQRDHLETAQSSARALLAIINDILDFSKLEAGQMKLEATKFDLHRLLEEMVA 233 Query: 674 LVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 L++ A +K + + A+ +PR A D ++Q+ N++ NA+ FT G + +S Sbjct: 234 LLKGAARDKGLTLSLRIADTVPRYQAGDPTRLRQVLTNLMGNAVKFTEK-GDVAVSVEPE 292 Query: 733 SNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 ++ LR V DTG+G+ F Q +S R GTGLGL + K +V+ G Sbjct: 293 ESDSSRLRFEVADTGIGIEPAAAPALFSEFVQADSSITRRFGGTGLGLSICKRLVEMMGG 352 Query: 791 KFYIFSTPAKGTLIEIIFPL 810 + S P +GT PL Sbjct: 353 EIGFDSIPGEGTTFHFTLPL 372 >gi|209514966|ref|ZP_03263835.1| multi-sensor hybrid histidine kinase [Burkholderia sp. H160] gi|209504592|gb|EEA04579.1| multi-sensor hybrid histidine kinase [Burkholderia sp. H160] Length = 1042 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 100/379 (26%), Positives = 184/379 (48%), Gaps = 37/379 (9%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 IL+A+ D I I+ G I+ N A + FGY + ++ + + PS+ + + Sbjct: 460 GILDASMDCIISIDHAGRIIEFNPASERTFGYQRKHVIGRELAELI--IPPSLRDAH--- 514 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK-----------------LPFSSCYSLTM 558 R+ + +T E +L RI ++ L + T+ Sbjct: 515 ------RRGFARYL--ATGEGPVLGRRIEVQAQRSDGTEFPVEISVTPILGGPKLVTATV 566 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ K+ + +L AK+ AEK S KS+FLA +SHE+RTPL +++G++++++ + Sbjct: 567 RDITASKRTQEELHEAKEAAEKASRAKSEFLASMSHELRTPLNSVLGYAQLLRCEEE--- 623 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + R + N I +SG + ++ ++LD++KIE+G +++ E V L + + + + Sbjct: 624 LSQRQRKALNVIQQSGEHLQRLIEEILDMAKIEAGTLDIVAENVDLHRMLDGIVEITRSR 683 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A K + + ++P ++ AD R + Q+ +N+L NAI +T G ++ + H V Sbjct: 684 AQSKGLAFTFAPGADVPAVVSADERRLCQVLMNLLDNAIKYTRHGEVVLRTMMH--ERAV 741 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V DTG+G+ L + F Q+ + + EGTGLGL ++K +V G+ + S Sbjct: 742 CFVVEDTGLGIRPEHLSEIFDVFHQVRDP-SMTVEGTGLGLAISKRLVHLMGGELQVASK 800 Query: 798 PAKGTLIEIIFPLYDTSHP 816 P +G+ L S P Sbjct: 801 PHEGSRFWFELELRPVSAP 819 >gi|209525055|ref|ZP_03273599.1| integral membrane sensor signal transduction histidine kinase [Arthrospira maxima CS-328] gi|209494464|gb|EDZ94775.1| integral membrane sensor signal transduction histidine kinase [Arthrospira maxima CS-328] Length = 573 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/271 (30%), Positives = 139/271 (51%), Gaps = 22/271 (8%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I Q +L AK AE + KS FLA +SHE+RTPL AIIG+SE++ ++ LG Sbjct: 299 IKRVAQYTEELQKAKIAAEAANRSKSVFLANMSHELRTPLNAIIGYSEML-HEESKDLGY 357 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 ++ I +G +LD+++D+LDISKIE+G + L+ E ++ + + + ++ Sbjct: 358 DDFLPDLERIQTAGKHLLDMISDILDISKIEAGHVTLYLEDFAVQQLIDDVVATATPLTE 417 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--------- 731 + ++ A ++ + ADL V+Q+ LN+LSNA FT + G I + Sbjct: 418 KNHNALKVKTAKDLGTMYADLPKVRQVLLNLLSNASKFT-NKGTITLQVQRVTKIPNEWK 476 Query: 732 --TSNEE---------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 T N E ++ +V+DTG+GM +++ K F Q S R GTGLGL + Sbjct: 477 KDTLNAEKFASAKTQYLVFQVKDTGIGMNKEQVKHIFKAFIQADASTTKRFGGTGLGLAI 536 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 ++ + + G Y+ S G+ + P++ Sbjct: 537 SQRLCEILGGGIYVKSREGVGSTFVVWLPVH 567 >gi|223940459|ref|ZP_03632310.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514] gi|223890862|gb|EEF57372.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514] Length = 832 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 86/269 (31%), Positives = 139/269 (51%), Gaps = 16/269 (5%) Query: 553 CYSL-TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 C +L T H + Q +L A+ AE + K++FLA +SHEIRTP+ +I + ++ Sbjct: 121 CAALRTKHLQDQLTQTNRELEAARVAAETAARAKAEFLANMSHEIRTPMNGVIAMTGLLL 180 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 N Y I S +L I+ND+LD SKIESGK+ L P +L V EA Sbjct: 181 ETNL----NNEQRSYVETIHSSSESLLTIINDILDFSKIESGKLELEHRPFNLRMGVEEA 236 Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + L+ A EK++ + ++IP + D+ ++Q+ +N+LSN I FT G + Sbjct: 237 LDLLATKAAEKKLDLAYQMDDDIPSHVHGDVTRLRQVLVNLLSNGIKFTNEGEVFVHVKI 296 Query: 731 HTSNEE----------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 H+++ E + VRDTG+G+ ++++ K F Q S + GTGLGL + Sbjct: 297 HSASPEPTADDATRLQLHFTVRDTGIGIHPTQIDRLFKSFSQADASTTRQYGGTGLGLAI 356 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +K +V+ GK ++ ST +G+ + P Sbjct: 357 SKRLVELMGGKMWVESTLQRGSTFHFLIP 385 >gi|62290941|ref|YP_222734.1| sensory box histidine kinase [Brucella abortus bv. 1 str. 9-941] gi|82700852|ref|YP_415426.1| ATPase-like ATP-binding protein [Brucella melitensis biovar Abortus 2308] gi|189025153|ref|YP_001935921.1| sensory box histidine kinase, hypothetical [Brucella abortus S19] gi|254690232|ref|ZP_05153486.1| sensory box histidine kinase, hypothetical [Brucella abortus bv. 6 str. 870] gi|254731263|ref|ZP_05189841.1| sensory box histidine kinase, hypothetical [Brucella abortus bv. 4 str. 292] gi|256258485|ref|ZP_05464021.1| sensory box histidine kinase, hypothetical [Brucella abortus bv. 9 str. C68] gi|260546204|ref|ZP_05821944.1| histidine kinase [Brucella abortus NCTC 8038] gi|297247326|ref|ZP_06931044.1| ATPase-like ATP-binding protein [Brucella abortus bv. 5 str. B3196] gi|62197073|gb|AAX75373.1| sensory box histidine kinase, hypothetical [Brucella abortus bv. 1 str. 9-941] gi|82616953|emb|CAJ12057.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Bacterial sensor protein, C-terminal:Histidine kinase [Brucella melitensis biovar Abortus 2308] gi|189020725|gb|ACD73447.1| sensory box histidine kinase, hypothetical [Brucella abortus S19] gi|260096311|gb|EEW80187.1| histidine kinase [Brucella abortus NCTC 8038] gi|297174495|gb|EFH33842.1| ATPase-like ATP-binding protein [Brucella abortus bv. 5 str. B3196] Length = 859 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 86/254 (33%), Positives = 140/254 (55%), Gaps = 4/254 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT D+++ + + L + E K+DF+ VS+E+R+PLT IIGF+E+++ F Sbjct: 599 LTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAF 658 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L N R +EY +YI S +++L IVND+LD++ +++G M L VS+ EA+S A S V Sbjct: 659 GSL-NERQLEYLDYISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRV 717 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + I + A+++ AD V+Q+ N+LSNA+++ P G I++ Sbjct: 718 SERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVAR-DGA 776 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +V+ V D G GM + L+ K F PN + G GLGL + K+ V+ + G+ I Sbjct: 777 DVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRR--RGAGLGLAIVKSFVELHGGRVEID 834 Query: 796 STPAKGTLIEIIFP 809 + +GT + FP Sbjct: 835 TGEERGTTVICRFP 848 >gi|318607055|emb|CBY28553.1| bara sensory histidine kinase (= VarS = GacS) [Yersinia enterocolitica subsp. palearctica Y11] Length = 847 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ Q P +Y Sbjct: 277 ELGLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTR----QTLKTSLTPTQTDYLQT 332 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RS N +L I+ND+LD SK+E+ K+ L P SL A+ E I L+ A+EK + + Sbjct: 333 IQRSANNLLCIINDVLDFSKLEAEKLILEHIPFSLRGALDEVIILLAHTAHEKGLELTLH 392 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV--ILRVRDTG 745 ++P +++ D ++QI N+L NAI FT G I+++ ++++V ++ + DTG Sbjct: 393 VNKDVPEQVIGDAMRLQQIVTNLLGNAIKFTEQGNIDILVAVRAIASQQVTLVVEIHDTG 452 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++ + + + F Q S R GTGLGL + + +V G S +G+ Sbjct: 453 IGISESQQAQLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFHSQVERGS 509 >gi|157369035|ref|YP_001477024.1| hybrid sensory histidine kinase BarA [Serratia proteamaculans 568] gi|157320799|gb|ABV39896.1| multi-sensor hybrid histidine kinase [Serratia proteamaculans 568] Length = 906 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 134/238 (56%), Gaps = 10/238 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K + + +Y Sbjct: 277 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQMLKTEM-----SVTQTDYLQ 331 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS N +L I+ND+LD SK+E+GK+ L P +L E + E I L+ A+EK + + Sbjct: 332 TIERSANNLLTIINDVLDFSKLEAGKLVLEHIPFALRETLDEVIVLLAPSAHEKGLELTL 391 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDT 744 N++P +++ D ++QI N+L NAI FT +G ++ + E+ +++ DT Sbjct: 392 DVHNDVPEQVIGDSLRLQQIITNLLGNAIKFTETGNIDIRVELRGQQDRQMELEVQIHDT 451 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G++ + + + F Q S R GTGLGL + + +V G S +G+ Sbjct: 452 GIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDICFHSQLNRGS 509 >gi|75908887|ref|YP_323183.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75702612|gb|ABA22288.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 708 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 80/241 (33%), Positives = 133/241 (55%), Gaps = 11/241 (4%) Query: 557 TMHDISEWKQ---EKNKLSHAKKIAEKESSH----KSDFLARVSHEIRTPLTAIIGFSEV 609 T DI E KQ E+ +L ++ A E+ K +FLA +SHE+RTPL AI+G+S++ Sbjct: 301 TCTDIHEQKQILEERARLLELEQTARAEAETANRIKDEFLAVLSHELRTPLNAILGWSKL 360 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 ++ ++ P R + I+R+ L + ++ DLLDIS+I GK+ ++ V+L + Sbjct: 361 LQERKLEP---ARTFQALATIERNATLQVQLIEDLLDISRILQGKLVINITKVNLVIVIL 417 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 A+ ++L A K I + T+F + + +++ D ++Q+ N+LSNA+ FTP GG+I +S Sbjct: 418 TALETMRLAAESKLIQVSTNFPSKMGQVMGDSARLQQVVWNLLSNAVKFTPKGGKIEVSL 477 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 I+ V DTG G+ L F Q +S R G GLGL + + +V+ + Sbjct: 478 EKVDGYAQIV-VSDTGKGIKPEFLPYVFDYFRQADSSSTRRFGGLGLGLAIVRKIVEIHG 536 Query: 790 G 790 G Sbjct: 537 G 537 >gi|17230375|ref|NP_486923.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] gi|17131977|dbj|BAB74582.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] Length = 1131 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/269 (30%), Positives = 142/269 (52%), Gaps = 15/269 (5%) Query: 547 KLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 KLP + L + D++E +Q +L+ + + K +FLA +SHE++TPLTA++G Sbjct: 380 KLPNTDDLWLVLATDVTEQQQLCKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLG 439 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 S ++ +Q+ G L N R YA I +SG ++ +VND+LD++++E+G+M L PVS+ Sbjct: 440 LSRLLVDQQLGEL-NERQARYAGLIHQSGRHLMSVVNDILDLTRMETGQMELTPVPVSIR 498 Query: 666 EAVSEAISLVQLYANEKRILIRT------------SFANNIPRILADLRSVKQIALNILS 713 A+S + N+ T S ++ +I+AD ++Q+ +++LS Sbjct: 499 AVCDRALSEAKAIHNQTSKGSTTEATRQSTPEFTLSMELDLDQIVADELRLRQMLVHLLS 558 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 NA FT G+I + +H + V DTG+G+ ++ + F Q+ N + EG Sbjct: 559 NAFKFTEISGEIGLRVSHWEG-WIAFTVWDTGIGIPEHQQHLIFQKFQQLENPLTRQFEG 617 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TGLGL L +A+ + G S KG+ Sbjct: 618 TGLGLVLTRALARLHGGDVSFLSREGKGS 646 >gi|330445983|ref|ZP_08309635.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490174|dbj|GAA04132.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 700 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/258 (30%), Positives = 136/258 (52%), Gaps = 7/258 (2%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y T +I+ K+ L A+K AE + KS F+A +SHEIRTPL A++G E + Sbjct: 298 YRGTAKNITSRKKRLFDLQEARKQAESANKAKSQFIAMMSHEIRTPLNAVLGLMESLS-- 355 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 L + + + + + +D+S +L+L I+ND+LD+S+IESG L +++ E++ Sbjct: 356 -LSGLDSKQKL-WLSQMDQSAHLLLTIINDILDLSRIESGSFRLFNSDINIVESIKLVAD 413 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + A +K + ++ ++IP+ I D + Q+ N++ NA+ FT G I++ Sbjct: 414 QLSPQATKKNVQLQCEIDDSIPKQIYGDKNRIAQVLFNLIGNAVKFTSVGSVRIVA--RK 471 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 E + + V DTG+G+ E PF Q S R GTGLGL +++ +++ GK Sbjct: 472 IEETIEIAVIDTGIGIAKDAQENIFNPFHQADGSITRRYGGTGLGLAISQYLIEKMKGKI 531 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S G+ +I P+ Sbjct: 532 SLESELGTGSCFKISIPI 549 >gi|300868153|ref|ZP_07112786.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300333856|emb|CBN57966.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1175 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 123/507 (24%), Positives = 226/507 (44%), Gaps = 34/507 (6%) Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD------DIEIAGGLSTLLDAP 373 L P T D F+ Y H + + L L + + D + G + + Sbjct: 688 GLAPGTFDGTDKMFYSYLHPEDCESLIAQLNLARQQQTDYSQYYRIVWSNGSIHWIESKG 747 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 K N +PV + + R A +Q N +N+L Q N Q+ + Sbjct: 748 KFFYNETGEPVRILGTVRDITACKQAEEALQ-NEKNNLERRVTERTTELQEVNNCMQSEL 806 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 E RI + ++I + IL+ D I ++R I N+ K+FGY E+ + Sbjct: 807 EEH---KRIQE-ALQISQARFAGILDIAEDAIISLDRHQRITLFNQGAEKIFGYSAEEAI 862 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILS--LDLRQTLEKITL-GSTKEEKLLSLRIIIKKLPF 550 +P V L V Y+ + + R+ E+ + G K+ I KL Sbjct: 863 GQPLDVLLPLRFVQVHQQYVNDFGQSPIRSRRMGERREISGRRKDGTEFPAEASISKLNL 922 Query: 551 SS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 +++ + DI++ KQ + K +F++ VSHE+RTPLT+I G Sbjct: 923 DKEVAFTVFLQDITDRKQIER--------------MKDEFISIVSHELRTPLTSIHGSLG 968 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++ + +D + LV ++ND+LDI +IESG++ + + ++++ + Sbjct: 969 MLASGLLKADSEEGKRMLYIAVDSTDRLV-RLINDILDIERIESGRVKMEKQCCNVEDLI 1027 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 +EA+++VQ AN ++ + S ++ + AD + Q +N+LSNAI F+ +G +I+ Sbjct: 1028 TEAVNVVQALAN--KVEVTLSVSSLSISLWADPDRIVQTLINLLSNAIKFSHTG-KIVWL 1084 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 T + ++ V+D G G+ +LE + F Q+ +S EGTGLGL + +++V + Sbjct: 1085 TVQQQDRHLLFIVKDEGRGIPTEKLESIFERFQQVDSSDSRNHEGTGLGLAICRSIVQQH 1144 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSH 815 G ++ S +G++ + P+ D Sbjct: 1145 DGHIWVESVLGEGSIFYFMIPIRDCEQ 1171 >gi|262280993|ref|ZP_06058776.1| sensor protein gacS [Acinetobacter calcoaceticus RUH2202] gi|262257893|gb|EEY76628.1| sensor protein gacS [Acinetobacter calcoaceticus RUH2202] Length = 935 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 91/284 (32%), Positives = 154/284 (54%), Gaps = 24/284 (8%) Query: 526 EKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLS----------- 572 + + + ST E +LL I ++K+L FS L + + +E +E + + Sbjct: 220 QHLVINSTGELRLLQRDIANVVKRLHFSF---LELKEHTEQTEEDLRRTLDTLEVQNITY 276 Query: 573 -HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 A+ A + KS FLA +SHE+RTPL +I GF ++ Q+ L N + + Y I Sbjct: 277 RQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLNNEQNL-YLQTIR 333 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 +S +L ++ND+LD SKI++GK+ L P L+EA+ + + ++ A +K I + +A Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAMAFYYA 393 Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVG 747 +NIP +++ D KQI N++SNAI FTP G I+ + H + +L V+D+G+G Sbjct: 394 DNIPQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIGQCLLHFSVQDSGIG 453 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 ++ + +K + F Q S + GTGLGL ++K +V G+ Sbjct: 454 LSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQ 497 >gi|237816446|ref|ZP_04595439.1| sensory box histidine kinase [Brucella abortus str. 2308 A] gi|237788513|gb|EEP62728.1| sensory box histidine kinase [Brucella abortus str. 2308 A] Length = 870 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 86/254 (33%), Positives = 140/254 (55%), Gaps = 4/254 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT D+++ + + L + E K+DF+ VS+E+R+PLT IIGF+E+++ F Sbjct: 610 LTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAF 669 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L N R +EY +YI S +++L IVND+LD++ +++G M L VS+ EA+S A S V Sbjct: 670 GSL-NERQLEYLDYISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRV 728 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + I + A+++ AD V+Q+ N+LSNA+++ P G I++ Sbjct: 729 SERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVAR-DGA 787 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +V+ V D G GM + L+ K F PN + G GLGL + K+ V+ + G+ I Sbjct: 788 DVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRR--RGAGLGLAIVKSFVELHGGRVEID 845 Query: 796 STPAKGTLIEIIFP 809 + +GT + FP Sbjct: 846 TGEERGTTVICRFP 859 >gi|229589756|ref|YP_002871875.1| putative two-component system fusion protein [Pseudomonas fluorescens SBW25] gi|229361622|emb|CAY48502.1| putative two-component system, fusion protein [Pseudomonas fluorescens SBW25] Length = 1243 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 85/257 (33%), Positives = 133/257 (51%), Gaps = 4/257 (1%) Query: 557 TMHDISE-WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 T+H +E + + +L A+ AE + KSDF+A VSHE+RTPLT I+ E + Sbjct: 524 TLHQQTEVLEAQAVELIQARNQAETANQAKSDFVATVSHELRTPLTLILAPLEQLSAATL 583 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P I+ A R+ +++ VND+LD SK E+GK L P+ L++ V Sbjct: 584 PPADWRVQIDRAQ---RNALRLMNRVNDILDFSKAEAGKFELCPAPIDLNKMVGVLAEDA 640 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A K + S + + D R ++I LN++SNAI FTP+GG + ++ T + Sbjct: 641 AMVAEGKGCTLTCSIDPALGTVFLDPRHFEKILLNLVSNAIKFTPAGGTVHLAVTALDGD 700 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 L V+D+G+G+ +L + F QI NS GTG+GL L K +V+ G+ + Sbjct: 701 RFELAVQDSGIGIAPDKLPLLFQRFSQIDNSATRHYSGTGIGLALVKYLVELMGGEVGVN 760 Query: 796 STPAKGTLIEIIFPLYD 812 S P +G+ + PL D Sbjct: 761 SEPGQGSCFFVRLPLGD 777 >gi|307151519|ref|YP_003886903.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306981747|gb|ADN13628.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1426 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 131/241 (54%), Gaps = 14/241 (5%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK+ AE + KS+F+A +SHEIRTP+ +IG + ++ + L + I Sbjct: 767 LEGAKREAEAANKAKSEFVAMMSHEIRTPMNGVIGMTGILLDTPLSELQR----DCVETI 822 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG+ +L I+ND+LD SKIESGK+ L +P +L E++ ++ L+ A EK + + F Sbjct: 823 RNSGDALLMIINDILDFSKIESGKLELEEQPFNLRESIESSLDLLAPKAAEKGLELAYIF 882 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--------VILRV 741 N P IL D+ ++QI +N++ N I FT G+++++ + E+ + V Sbjct: 883 DPNTPETILGDVTRLRQILVNLIGNGIKFTEK-GEVVVNVSSYPQEKSSTAPTYTIEFAV 941 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ +K K F Q+ +S + GTGLGL ++K + G+ + S KG Sbjct: 942 TDTGIGIAPERKDKLFKAFSQVDSSTTRQYGGTGLGLVISKRLTQLMGGEISVDSQQGKG 1001 Query: 802 T 802 + Sbjct: 1002 S 1002 >gi|269965226|ref|ZP_06179360.1| sensor histidine kinase/response regulator [Vibrio alginolyticus 40B] gi|269830212|gb|EEZ84439.1| sensor histidine kinase/response regulator [Vibrio alginolyticus 40B] Length = 932 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 139/252 (55%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQ-TDYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L+I+ND+LD SK+E+GK+ L P E++ E I+L A+EK + I Sbjct: 331 TIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITL 390 Query: 689 SFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDT 744 I P ++ D ++QI N++ N+I FT G + + S + V L+ VRDT Sbjct: 391 KVDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQSGDSVELQFMVRDT 450 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTF 510 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 511 WFTVRLHSTEMP 522 >gi|53748095|emb|CAG38882.1| putative histidine kinase BvgS [Bordetella holmesii] Length = 1218 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 108/395 (27%), Positives = 184/395 (46%), Gaps = 53/395 (13%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI-----LRKPFT 498 +R + ++ + +++ + + + +R G ++ NR+ F ED+ L P Sbjct: 570 ERALSDQLAFMRVLIDGIPNPVFVRDRHGRMVICNRSYLDTFQLQAEDVVGRTLLESPMR 629 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIKKLPFSSC 553 V YL Q +E+ G ++ L+LR + LP++ Sbjct: 630 TDNPAQAARVHEQYL---------QAMEQEAGGPVFQDLELTLRGEKHYLYHWLLPYADS 680 Query: 554 YSLTMHDISEWKQ--EKNKLSH----AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 I W E+ +L H AK+ A+ + K+ FLA +SHEIRTP+ AIIG Sbjct: 681 VGRVNGLIGGWTDLTERMRLLHDLQEAKEEADAANRAKTTFLATMSHEIRTPMNAIIGML 740 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLV--------LDIVNDLLDISKIESGKMNLHF 659 E++ R E A +DR +V LD++ D+LDISKIE+ K+ L Sbjct: 741 ELVLR---------RPPEQA--VDRQALMVAYDSARSLLDLIGDILDISKIEADKLELTP 789 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHF 718 P L + +++ Q A + + +R A+ +P + D +KQ+ N++SNA+ F Sbjct: 790 VPTDLRRLLESVVNVFQGMARQNGLSLRLDIGADQVPAVSIDASRLKQVVSNLVSNALKF 849 Query: 719 TPSGGQIIISTTHTSNEEVILR----VRDTGVGMTNYELEKAMKPFGQI---PNSQQIRG 771 T GG + +S E+ + R V D+G G++ + + +PF Q+ + + R Sbjct: 850 TEKGG-VTVSMQVRPVEQGLARIEIAVDDSGPGISAADRRRLFEPFTQVHQEARADKGRL 908 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 GTGLGL +++ +V A G F + S P KGT I++ Sbjct: 909 AGTGLGLAISRRIVQAMGGSFDLSSIPGKGTRIDV 943 >gi|167628685|ref|YP_001679184.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] gi|167591425|gb|ABZ83173.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] Length = 909 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 89/302 (29%), Positives = 163/302 (53%), Gaps = 24/302 (7%) Query: 513 LTEILSLDLRQTLEKITLGST-KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 LT +S +R+ ++K+ GS ++K S RI LP S + + ++S Q N++ Sbjct: 318 LTVAVSNRIRKPIDKLIEGSRHMQQKNYSYRI---DLPESPNVPIELKELS---QTFNRM 371 Query: 572 S-----HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + H +++ + + KSDFLA +SHEIRTP+ AI+G +E++ + P EY Sbjct: 372 AEMIDDHVQEL-RRANEAKSDFLANMSHEIRTPMNAILGMTELLGETQL----TPEQAEY 426 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 +G+ +L ++ND+LD+SK+ESG+M L +L E V + L+ + A++K + + Sbjct: 427 VRICRGAGDTLLYLINDILDLSKVESGRMELQLTQFNLVELVEKTAELMAVRAHKKGLEL 486 Query: 687 RTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EVILR 740 +P +++ D ++QI +N++ NA+ FT G+I++ ++ + Sbjct: 487 VCHIFPGVPSQVVGDPGRLQQILINLMGNAVKFTER-GEIVLQVERDPDQPGEAGAIRFA 545 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+G+ + E + F Q +S R GTGLGL +++ +V+ G+ ++ S K Sbjct: 546 VSDTGIGIAADKKEVIFERFSQADSSTTRRYGGTGLGLTISRYLVEMMKGRIWVESELGK 605 Query: 801 GT 802 G+ Sbjct: 606 GS 607 >gi|91776115|ref|YP_545871.1| periplasmic sensor hybrid histidine kinase [Methylobacillus flagellatus KT] gi|91710102|gb|ABE50030.1| periplasmic sensor hybrid histidine kinase [Methylobacillus flagellatus KT] Length = 1146 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/264 (29%), Positives = 138/264 (52%), Gaps = 6/264 (2%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L +I KQ +L A+++AE+ + KS ++ +SHE+RTPL +I+G+++++ N Sbjct: 664 LLQREIVLHKQTDAELQRARQVAEQANQAKSRYITGISHELRTPLNSILGYAQLLDNDPS 723 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P + I I RSG +L ++ LDI++IESGK+ V E + + +S+ Sbjct: 724 IPENRRQSI---RVIRRSGEHLLSLIEGTLDIARIESGKLTFDLRLVRFPEFIQQLVSMF 780 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 +L A K I + +P+++ D + + QI +NIL NA+ FT GG + + Sbjct: 781 ELQARNKGIDFKYELRGELPKVVRIDQKRLSQILINILGNAVKFTRHGG--VSFKLRYAR 838 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E + + + DTG G+ E+EK +PF + + + GTGLGL ++K + + G+ + Sbjct: 839 EMLHISIEDTGPGIAPEEIEKVFEPFARGSAAAKSNIGGTGLGLTISKMLTELMGGQLTV 898 Query: 795 FSTPAKGTLIEIIFPLYDTSHPHD 818 ST +G+ I L P + Sbjct: 899 RSTLGQGSQFNIRLFLSQVRVPEE 922 >gi|288942103|ref|YP_003444343.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897475|gb|ADC63311.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 873 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 103/399 (25%), Positives = 185/399 (46%), Gaps = 17/399 (4%) Query: 418 FEKANQFPENMPQNG------IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 F N + +P +G I + ++R+ + ++ + + E G+A+I + Sbjct: 100 FRHVNVLVQVLPVDGRRMFYAIYRDITESRLAEERLRRSEAKFRAAFEIAPHGMALIAPD 159 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL-RQTLEKITL 530 G L N+A+ ++ GY ++L + F + YL +++S R EK L Sbjct: 160 GHWLQVNQALCRILGYDESELLVRDFQSISHPEDLAADLVYLEQLVSGATDRIQFEKRYL 219 Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMH--DISEWKQEKNKLSHAKKIAEKESSHKSDF 588 + + L + + + + H D++E K + + A + AE + KS+F Sbjct: 220 HRQGQPIPVMLSVSAVRDEWGRLSRMVAHVLDLTERKASEEAMRQAMETAEVANRAKSEF 279 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 LA +SHEIRTPL AIIG +++ + + R +Y N I + + +L I+ND+LD S Sbjct: 280 LANMSHEIRTPLNAIIGLGQLLLDSGL----DSRQRDYMNKIRQGSDALLRILNDVLDYS 335 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQI 707 KIE+G++ L ++ + + +L L A K + + P++L D + Q+ Sbjct: 336 KIEAGQIQLDTVDFRIEAVLDQLTALFSLAAESKGLALYYHLDPRTPQVLRGDPMRLGQV 395 Query: 708 ALNILSNAIHFTPSG-GQIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIP 764 N++ NA+ FT G ++ I ++ L VRDTG+GM +E + F Q Sbjct: 396 LNNLVGNAVKFTERGFVELRIRALREDQGQIQLAFSVRDTGIGMDQASIEHLFQSFTQAD 455 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 S R GTGLGL +++ + G + S G++ Sbjct: 456 CSITRRYGGTGLGLSISRQLAQLMGGDIRVRSRLGIGSV 494 >gi|167621563|ref|YP_001672071.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167351686|gb|ABZ74412.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 524 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 108/369 (29%), Positives = 173/369 (46%), Gaps = 16/369 (4%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI--LRKPFTVFLEQNTPSVMN 510 +L I+E G A+ R G+ LS N A+ ++ GY ++ L F + ++ Sbjct: 17 RLARIIELLPAG-AVHVRAGV-LSMNAAMEEVTGYARAELPTLEAWFEKLYGDTSGKLIA 74 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 HYL + Q GS + RI + S ++DI+E + Sbjct: 75 HYLDQ-----RAQGFPATVEGSIRRRDGEVRRIEFRACNDSVGEIWIVNDITERDLIERD 129 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK AE + KS+FLA +SHE+RTPLTAIIGF+E++ R G L P+ + I Sbjct: 130 LIAAKDRAEAGARSKSEFLANMSHELRTPLTAIIGFAELLA--REGSLA-PQERHWLARI 186 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + + + IVND+LD SK+E G + L EP L + V + ++L+ A K + + Sbjct: 187 EDASKALHSIVNDVLDFSKLEEGAVELESEPFGLRKLVEDTVALLADQAERKGVGLAIFV 246 Query: 691 ANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGV 746 + + L D ++QI LN++ NA+ FT GG I + +V + DTG+ Sbjct: 247 DDGLCDGLRGDTGRLRQILLNLICNAVKFTNHGGVTIRVSEDVGAGGPPQVRFAISDTGI 306 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ + L++ + F Q S GTGLGL + + +V+ G+ + S G+ Sbjct: 307 GIPDAALDQVFQRFVQADGSVSREFGGTGLGLAICRRLVELMGGEIGVESRVGSGSTFWF 366 Query: 807 IFPLYDTSH 815 L +H Sbjct: 367 SVALAPAAH 375 >gi|71908962|ref|YP_286549.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB] gi|71848583|gb|AAZ48079.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB] Length = 923 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/252 (32%), Positives = 134/252 (53%), Gaps = 10/252 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q +L AK+ AE S KS+FLA +SHEIRTP+ ++G +E++ G P Sbjct: 250 EQRTRELRLAKEAAEAGSQAKSEFLATMSHEIRTPMNGVLGMTELL----LGTELEPTQR 305 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 ++ ++RSG +L I+ND+LD SKIE+GK+ L L + E++ L A K + Sbjct: 306 QFVEAVERSGKHLLHIINDILDFSKIEAGKLELDVVDFDLRNLLEESLELFSQPARRKGL 365 Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILR 740 + + I+ D ++QI N+L NA+ FT +G ++++ + ++ L Sbjct: 366 ELVADLPPDEKLIVRGDPLRLRQIVTNLLGNAVKFTETGEILLRLLVVEPRDNGLKLALV 425 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+G+ EK + F Q S + GTGLGL + + +VD G+ ++ STP K Sbjct: 426 VSDTGIGIPLDAQEKIFEHFLQADGSTTRKYGGTGLGLAICRHLVDMMGGRIHVESTPGK 485 Query: 801 GTL--IEIIFPL 810 G +E+ PL Sbjct: 486 GAAFTVELDLPL 497 >gi|71905682|ref|YP_283269.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71845303|gb|AAZ44799.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 1193 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 138/250 (55%), Gaps = 8/250 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI+E KQ + L+ AK AE + K+ FLA +SHEIRTP+ A+IG + ++ Sbjct: 531 TLQDITERKQAEIALTEAKHAAEAAAEAKAAFLANMSHEIRTPMNAVIGLAHLLLKGDLS 590 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 G R +Y + I SG ++L ++ND+LD SKIE+G+M L +LD+ + S++ Sbjct: 591 --GKQR--DYISRIHGSGQMLLGLINDILDFSKIEAGRMVLEETEFALDDVLDNVTSVLL 646 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST---THT 732 A EK ++++ ++P +L D + QI +N+L NA+ FT SG + +T Sbjct: 647 HRAQEKGLIMQYVVEPDVPTNLLGDPLRLAQILINLLGNALKFTASGSITVFVRRLPGNT 706 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + E+ + V+DTGVGM+ + + + F Q +S + GTGLGL + K + G Sbjct: 707 ARAELEIDVQDTGVGMSQEQQQVLFQAFSQADSSITRKYGGTGLGLTICKRLAQLMRGDI 766 Query: 793 YIFSTPAKGT 802 ++ S G+ Sbjct: 767 WVTSQSGVGS 776 >gi|254230528|ref|ZP_04923899.1| signal transduction histidine-protein kinase BarA [Vibrio sp. Ex25] gi|262393275|ref|YP_003285129.1| BarA sensory histidine kinase [Vibrio sp. Ex25] gi|151936953|gb|EDN55840.1| signal transduction histidine-protein kinase BarA [Vibrio sp. Ex25] gi|262336869|gb|ACY50664.1| BarA sensory histidine kinase [Vibrio sp. Ex25] Length = 932 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 139/252 (55%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQ-TDYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L+I+ND+LD SK+E+GK+ L P E++ E I+L A+EK + I Sbjct: 331 TIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITL 390 Query: 689 SFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDT 744 I P ++ D ++QI N++ N+I FT G + + S + V L+ VRDT Sbjct: 391 KVDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQSGDSVELQFMVRDT 450 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTF 510 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 511 WFTVRLHSTEMP 522 >gi|260551959|ref|ZP_05825821.1| sensor protein gacS [Acinetobacter sp. RUH2624] gi|260405362|gb|EEW98857.1| sensor protein gacS [Acinetobacter sp. RUH2624] Length = 935 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 91/284 (32%), Positives = 154/284 (54%), Gaps = 24/284 (8%) Query: 526 EKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLS----------- 572 + + + ST E +LL I ++K+L FS L + + +E +E + + Sbjct: 220 QHMVINSTGELRLLQRDIASVVKRLHFSF---LELKEHTEQTEEDLRRTLDTLEVQNITY 276 Query: 573 -HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 A+ A + KS FLA +SHE+RTPL +I GF ++ Q+ L N + + Y I Sbjct: 277 RQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLSNEQNL-YLQTIR 333 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 +S +L ++ND+LD SKI++GK+ L P L+EA+ + + ++ A +K I + +A Sbjct: 334 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAMAFYYA 393 Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVG 747 +NIP+ ++ D KQI N++SNAI FTP G I+ + H + +L V+D+G+G Sbjct: 394 DNIPQEVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIGQCLLHFSVQDSGIG 453 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 ++ + +K + F Q S + GTGLGL ++K +V G+ Sbjct: 454 LSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQ 497 >gi|239908782|ref|YP_002955524.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798649|dbj|BAH77638.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 968 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 88/259 (33%), Positives = 139/259 (53%), Gaps = 15/259 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI + KQ + L +K+ AE + KS FLA +SHEIRTPL I+G +++K P Sbjct: 565 DIGQRKQAEEALKQSKEEAESANKAKSVFLANMSHEIRTPLNGILGMLQLLKTT--DP-- 620 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQ 676 N EY RS N + +++D+LDIS+IE+GKM + F+ + +++SE L Sbjct: 621 NDEQKEYLLGAIRSTNRLTRLLSDILDISRIEAGKMQIVESEFDIKMIWDSISE---LFD 677 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG----GQIIISTTH 731 + A K +L+ + N +P +L D ++QI N++ NAI FT G ++ + Sbjct: 678 MEARGKGLLLEFRWDNILPMLLVGDEARLRQILFNLVGNAIKFTEKGKIRIDASLLPRSS 737 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 S+ V++ V DTG+G++ +L+ +PF Q S R +G GLGL + + +V G Sbjct: 738 DSSVRVLVTVSDTGIGISEEQLKDIFEPFVQAEGSYTRRFQGAGLGLSIVRRLVKLLDGD 797 Query: 792 FYIFSTPAKGTLIEIIFPL 810 I STP +GT + P Sbjct: 798 ISIDSTPGEGTTFYLSLPF 816 >gi|194291671|ref|YP_002007578.1| sensor hybrid histidine kinase [Cupriavidus taiwanensis LMG 19424] gi|193225575|emb|CAQ71521.1| putative sensor hybrid histidine kinase [Cupriavidus taiwanensis LMG 19424] Length = 649 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 134/255 (52%), Gaps = 7/255 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E + +L+ AK AE + KS FLA VSHEIRTP+ AI G E+ Q P Sbjct: 189 DLTERHEMLAELAQAKTEAEAANRAKSAFLASVSHEIRTPMNAITGMLELTLAQSLLPDE 248 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + A+ +S +L +++D+LD+SK+E+GK +H P SL V + + + A Sbjct: 249 QRLQLLTAH---KSAVGLLALIDDILDLSKLEAGKFRIHPAPTSLPGLVDDTLLIFGPGA 305 Query: 680 NEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNE 735 +K + + + + + P D +QI N++SNA+ FT SG ++ +T + Sbjct: 306 AQKGLPLTSGVSAALAPLHQVDALRFRQILANLVSNAVRFTDSGTVHVRLDAQSTGDGIQ 365 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +VIL V DTG+G+ + +PF Q+ + GTGLGL + + + A G+ + Sbjct: 366 DVILTVSDTGIGIPFEAQARLFQPFEQVHGCARSHAGGTGLGLAICRRLAKAMGGRITLT 425 Query: 796 STPAKGTLIEIIFPL 810 S P +GT + + PL Sbjct: 426 SQPGRGTRVVVSLPL 440 >gi|119944738|ref|YP_942418.1| sensor histidine kinase [Psychromonas ingrahamii 37] gi|119863342|gb|ABM02819.1| sensor histidine kinase with ATPase domain, two fused [Psychromonas ingrahamii 37] Length = 1574 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/239 (34%), Positives = 129/239 (53%), Gaps = 10/239 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L+ + K + KS+FLA +SHEIRTP+ AIIG SE+ NQ P+ +Y + Sbjct: 812 RLTMMNRAIHKANMAKSEFLANMSHEIRTPMNAIIGLSELSLNQDM----TPQLRDYLSK 867 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SGN +L I+N +LD SKIE+GK++L SL + + + EK I + TS Sbjct: 868 IHSSGNSLLGIINGILDFSKIEAGKLDLENIEFSLLDVLDNISNTFYFTLAEKNIELITS 927 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDT 744 ++P ++ D QI N+++NAI FT + GQI I + ++ ++ V DT Sbjct: 928 IDPDVPWHLVGDPLRTGQIFTNLINNAIKFT-NKGQITICASCLEKDDKQVRLLFSVADT 986 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 G+G+ + +PF Q S + GTGLGL + K +V+ G+ +I S KG++ Sbjct: 987 GLGIPKDRIASLFEPFAQADGSTSRKHGGTGLGLSICKRLVEEMNGRIWIESEQGKGSV 1045 >gi|78048724|ref|YP_364899.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037154|emb|CAJ24899.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 1191 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/246 (32%), Positives = 133/246 (54%), Gaps = 8/246 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S K+ FLA + HE+RTP+T ++G SE++ PL + R YA+ I Sbjct: 799 HKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQT---PL-DGRQQGYASAIQL 854 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 +G +L +VND LD+++IE+GK+ L + L + V + + LV+ A +K++ + Sbjct: 855 AGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQKQLAFQCELDE 914 Query: 693 NIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTT--HTSNEEVILRVRDTGVGMT 749 +P L D V+QI LN+L NA+ FT G + TT + + + + VRDTG GM+ Sbjct: 915 ALPPALHGDASRVQQILLNLLFNAVKFTERGSVHLRLTTLPQYTRQGLRVEVRDTGPGMS 974 Query: 750 NYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + + F Q + + R G+GLGL + + + A G + S +G + Sbjct: 975 AEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGAVTVTSELGQGACFVVEL 1034 Query: 809 PLYDTS 814 PL+ S Sbjct: 1035 PLHWVS 1040 >gi|254788089|ref|YP_003075518.1| integral membrane sensor hybrid histidine kinase [Teredinibacter turnerae T7901] gi|237686348|gb|ACR13612.1| integral membrane sensor hybrid histidine kinase [Teredinibacter turnerae T7901] Length = 1140 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/268 (31%), Positives = 144/268 (53%), Gaps = 18/268 (6%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L +I+ ++ KL AK+ AE +S KS +L +SHE+R+PL +I+G+++++++ Sbjct: 646 LLQEEITAHEETDRKLQQAKEKAEAANSAKSRYLTGISHELRSPLNSILGYAQLLEHDE- 704 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 N RY + I SG + D++ LLDISKIESG++++H + V + + + + + Sbjct: 705 EISENKRY--QLSVIRNSGEHLSDLIEGLLDISKIESGRLDIHRDQVRISALLDQLVYMF 762 Query: 676 QLYANEKRILIRTSFANNIPRILA-----DLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 +L A EK + F +LA D + ++QI +N+LSNA+ FT GG + + Sbjct: 763 RLQAEEKGL----RFEYQCHSVLAEYVTTDEKRLRQILINLLSNAVKFTERGG--VSFSV 816 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI--PNSQQIRGEGTGLGLPLAKAMVDAN 788 ++ ++DTGVG+ ELE+ +PF ++ P S Q+ GTGLGL + + +VD Sbjct: 817 RYRSQVAEFSIKDTGVGIPEDELERIFRPFERVRTPGSPQV--SGTGLGLTITRLLVDIM 874 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 G + + P G + L P Sbjct: 875 GGDLEVVNNPEGGCTFTVWMMLSQVVTP 902 >gi|255535846|ref|YP_003096217.1| Signal transduction histidine kinase [Flavobacteriaceae bacterium 3519-10] gi|255342042|gb|ACU08155.1| Signal transduction histidine kinase [Flavobacteriaceae bacterium 3519-10] Length = 1200 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 81/262 (30%), Positives = 140/262 (53%), Gaps = 12/262 (4%) Query: 558 MHDISEWKQEKNKLSHAKKI--------AEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 + + S +EKN L + I E+ + +KS+FLA +SHE+RTPL +I+ S++ Sbjct: 498 LEERSALLEEKNMLIEQRNIDIQQKSIELEQSTKYKSEFLANMSHELRTPLNSILLLSKL 557 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + +Y+EYA + SG +L +++++LD+SKIESGKM L V L E Sbjct: 558 MTESEDL---DEQYVEYAAVMQSSGQGLLTLIDEILDLSKIESGKMTLEIMDVPLAEITD 614 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 + L A +K + ++ P++L D ++QI N+LSNAI FT +G + Sbjct: 615 DMRMLFLPMAKDKNLELKVETEAQAPQMLQTDKLRLEQILKNLLSNAIKFTSTGSITLQV 674 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + ++ ++I +V DTG+G+ ++ + F Q S Q + GTGLGL +++ + Sbjct: 675 SGDEAHTKIIFKVIDTGIGIAKDKMRLVFEAFQQADGSTQRKYGGTGLGLSISRELARLL 734 Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810 G+ + ST KG+ + P+ Sbjct: 735 GGEITLESTEGKGSEFTLTVPV 756 >gi|239995946|ref|ZP_04716470.1| sensory box histidine kinase/response regulator [Alteromonas macleodii ATCC 27126] Length = 932 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/242 (34%), Positives = 131/242 (54%), Gaps = 9/242 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q++ L + +K + KSDFLAR+SHEIRTPL AIIG +++ + I Sbjct: 399 RQQRKALDALTQDLQKATKAKSDFLARMSHEIRTPLNAIIGLTKLSQRAAEDKDQQTNLI 458 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I+ + +L I+ND+LD SKIE+GK+++ +LD V++ I L A EK I Sbjct: 459 Q----IEGASQTLLSIINDILDFSKIEAGKLDIESTQFNLDALVNQTIRLHLGRAEEKHI 514 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LR 740 + + ++P ++ D ++QI N++SNA+ FT G I +S T N E I Sbjct: 515 ELIQHISRDVPLNLIGDPLRIQQILSNLVSNALKFTED-GLISVSVRCTHNVEDIQLEFE 573 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+DTG+G+ + + +PF Q S R GTGLGL + K +V G+ ++ S K Sbjct: 574 VKDTGIGLNSTQKALLFQPFNQGDESISRRYGGTGLGLAICKQLVTLMGGEIWVESQLGK 633 Query: 801 GT 802 G Sbjct: 634 GA 635 >gi|119488887|ref|ZP_01621849.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] gi|119455048|gb|EAW36190.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] Length = 1261 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/254 (32%), Positives = 132/254 (51%), Gaps = 18/254 (7%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK+ AE + KS FLA +SHE+RTPL AI+GFS+++ + +E I Sbjct: 754 LRQAKEAAEAANRSKSTFLANMSHELRTPLNAILGFSQLLSRSIYLSGDEKDSLE---VI 810 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG +L ++N +LD+SKIE+G+M + L + + AN+K + ++ Sbjct: 811 HSSGQHLLTLINQVLDLSKIEAGRMKMQLRKFDLFHLLQSLERMFTQKANDKNLELKFDC 870 Query: 691 ANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI----------- 738 +IP+++ D ++QI +N+LSNAI FTP G I+ SN E I Sbjct: 871 HPDIPQLIYTDETKLRQILINLLSNAIKFTPRGEIILRVYPRWSNLEAISSSRLPAGTYA 930 Query: 739 --LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V+DTGVG+ E + + F Q + QQ + EGTGLGL +++ + G+ + S Sbjct: 931 LSFEVKDTGVGIAPDECKYLFQAFVQTLSGQQAQ-EGTGLGLKISQQFIHLIGGEISVES 989 Query: 797 TPAKGTLIEIIFPL 810 +GT + + P+ Sbjct: 990 DLGRGTTFQFMIPV 1003 >gi|83312537|ref|YP_422801.1| sensor protein gacS [Magnetospirillum magneticum AMB-1] gi|82947378|dbj|BAE52242.1| Sensor protein gacS [Magnetospirillum magneticum AMB-1] Length = 1117 Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 112/400 (28%), Positives = 188/400 (47%), Gaps = 49/400 (12%) Query: 437 DVDTRINKRKMEIEVM--QLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDIL 493 + + R+ + EIE + + SILE+ DGI I+ G NRA +KL + P E Sbjct: 329 EAEERLKASQAEIERLAERNNSILESVDDGIVGIDLNGRATFVNRAAAKLLDFEPAE--- 385 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLR------QTLEKITLGSTKEEKLLSLRIIIKK 547 ++ + +++LDL Q L ++T S +++ R Sbjct: 386 --------------LVGSDILPLMALDLHTAEKLYQILLRLT-ESIRDDTASFKRRDGSP 430 Query: 548 LPFSSCYSLTM------------HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 LP S M DI++ + + +L AK+ AE + KS+FLA +SHE Sbjct: 431 LPVEYIASPVMDRGNQVGVVLGFRDITQRRLVERQLREAKEAAEAGNRTKSEFLATMSHE 490 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 IRTP+ +IG + ++ + R + +A I SG +L ++ND+LD SK+E+GK+ Sbjct: 491 IRTPMNGVIGMTGLLLDTRL----SEEQRHFAETIRDSGESLLTVINDILDFSKMEAGKL 546 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL--ADLRSVKQIALNILS 713 +L + L V + ++ A+ K I I S + R+L +D ++Q+ +N+ Sbjct: 547 DLDYTEFELVPLVESVVDILAPRAHAKGIEI-ASLIDPRLRMLVRSDPGRLRQVLMNLGG 605 Query: 714 NAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 NA+ FT GG I +S + + R VRDTG+G+ + F Q+ S R Sbjct: 606 NAVKFTEKGGVSIEVSLLDGPDAPAMARFDVRDTGIGIPPEAQGRLFSMFSQVDASTARR 665 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL +++ + + G+ + S +G+ I PL Sbjct: 666 YGGTGLGLAISRRLAELMGGEVGVESAVGRGSRFWITLPL 705 >gi|310795325|gb|EFQ30786.1| hsp90-like protein [Glomerella graminicola M1.001] Length = 1390 Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 94/338 (27%), Positives = 165/338 (48%), Gaps = 29/338 (8%) Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNH------YLTEILSLDLRQTLEKITLGSTKEEKL 538 F PVEDIL T V H Y T L + ++T E I+ T E + Sbjct: 698 FLRPVEDILAG-------GKTEEVAEHGMDGRWYRTRFLPILGKKTKEGISTNETCIEGV 750 Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 + + + + +L + + E +EK + + A++ + KS FLA +SHEIRT Sbjct: 751 IGVIMDVSELKEKA------EGLKEESREKKQAMANEAAAKEANRLKSQFLANMSHEIRT 804 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 P+T +IG +E++++ + EY I RS N +L ++ND+LD SK+ESG++++ Sbjct: 805 PITGVIGMAELLRDMEL----DAEQTEYVENIQRSANALLTVINDILDFSKVESGRLDIE 860 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---ILADLRSVKQIALNILSNA 715 SL V++ ++ A K + R+ + + ++ D V+QI N+L+N+ Sbjct: 861 EVQFSLSVIVTDVRKMLSFAAERKNLDFRSDISGEVENDLVVIGDPGRVRQIITNLLTNS 920 Query: 716 IHFTPSG-GQIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 I FT G + + +++ ++++ V D+G+G+ +K +PF Q S + Sbjct: 921 IKFTNQGYVKFSVQKEKETSDSIVVKFIVEDSGIGIEEEVRKKLFQPFSQGDASTARKFG 980 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL + K +++ G + ST GT+ P Sbjct: 981 GTGLGLTICKNLLELMNGNMTLESTLGNGTVATFWVPF 1018 >gi|291570461|dbj|BAI92733.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 1351 Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/276 (28%), Positives = 145/276 (52%), Gaps = 28/276 (10%) Query: 549 PFSSCYSLTMHDISEW-------KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 PF + + +++W +Q +LS A+ A + KS+FLA +SHEIRTP+ Sbjct: 627 PFRAVDQELLKLMAQWIGSEIERQQTAQELSEARDEALAATRAKSEFLATMSHEIRTPMN 686 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 A+IG + ++ + + ++ I S + +L ++ND+LD SKIESGK++L P Sbjct: 687 AVIGMTGLLLDTPLSLVQQ----DFVETIRSSSDALLSLINDILDFSKIESGKLDLEAFP 742 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720 SL + E++ L+ A K + + P ++ D+ V+QI +N+LSNA+ FT Sbjct: 743 FSLRTCLEESLDLLATKAASKSLELGYFIDAYTPNEVVGDMARVRQILVNLLSNAVKFT- 801 Query: 721 SGGQIIISTT---------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 + G++++S + ++++ ++ + V DTG+G+ + + K F Q+ Sbjct: 802 ARGEVLVSVSAKPLFSDLELTAKSMYSTHYQIEVAVSDTGIGIPVDRMNRLFKSFSQVDA 861 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 S + GTGLGL +++ + + GK ++ S A G Sbjct: 862 STNRQYGGTGLGLAISQRLAEMMGGKMWVVSGDAIG 897 >gi|66044540|ref|YP_234381.1| PAS [Pseudomonas syringae pv. syringae B728a] gi|63255247|gb|AAY36343.1| PAS [Pseudomonas syringae pv. syringae B728a] Length = 1209 Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 85/263 (32%), Positives = 136/263 (51%), Gaps = 10/263 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ--RFGP 617 DI+E KQ + +L A ++A + + KS FLA +SHEIRTP+ AIIG E+ Q R G Sbjct: 692 DITERKQLEQQLQEATRLAAQANEAKSAFLASMSHEIRTPMGAIIGLLELECEQALRLGT 751 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + + + ++ A+ RS ++ ++ + LD+++IE+G M L SL I L Sbjct: 752 MPS-QGLQVAH---RSATELVALIGESLDLARIEAGGMQLSLAVTSLQGLFDGVIELFSA 807 Query: 678 YANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNE 735 A EK + +R F A D ++Q+ N+L NA+ FT G ++ + T S E Sbjct: 808 QAREKGVELRLEFSAQARGDYWLDPLRLRQVLHNVLGNALKFTRQGAVVVRLDVTSDSPE 867 Query: 736 EVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +R+ +D+G G+ ++ +PF Q + G+GLGL + + +V+ G Sbjct: 868 STRVRIGIQDSGEGIDPQRQQQVFQPFTQANDDTAAHYGGSGLGLSITRQLVELMRGDIS 927 Query: 794 IFSTPAKGTLIEIIFPLYDTSHP 816 + S P KGTL+ I PL S P Sbjct: 928 LHSEPGKGTLVTIDLPLTRVSEP 950 >gi|300864747|ref|ZP_07109599.1| Sensor protein (modular protein) [Oscillatoria sp. PCC 6506] gi|300337257|emb|CBN54747.1| Sensor protein (modular protein) [Oscillatoria sp. PCC 6506] Length = 1008 Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 100/379 (26%), Positives = 187/379 (49%), Gaps = 46/379 (12%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L SI++ +DG+ + N G I N A++ +F D+ K F E+ S ++ + Sbjct: 400 LASIIDTIADGLLVTNYNGRITRFNPALTNMFALDRLDLTGK----FTEEIFGSEVSKLI 455 Query: 514 T-------EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566 EI +++L + GS +L + P + + DI+ Sbjct: 456 DNTKQPPHEISTVELALQGGRFAKGSAV--AILKKSASDSQAPTYIGSVILIRDIT---- 509 Query: 567 EKNKLSHAKKIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKN---QRFGPL--GN 620 AEKE K+DF++ VSHE+RTPLT+++GF+++I+ + P+ Sbjct: 510 -----------AEKEVDQMKTDFISTVSHELRTPLTSVLGFAKLIQKKLEENVFPIVVTE 558 Query: 621 PRYIEYA--------NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + ++ A I G + D++NDLLD++K+E+GK++ +P+ +D+ + AI Sbjct: 559 DKKVQRAVKQVGDNLQIIVSEGQRLTDLINDLLDVAKMEAGKIDWKMQPMKVDDLIDRAI 618 Query: 673 SLV-QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + L+ N+ I+ N+P ++ D + Q+ +N+LSN+I FT G + Sbjct: 619 AATFALFENKGLEPIK-DIEENLPELVGDRDKLIQVMINLLSNSIKFTDKG--FVTCQAK 675 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 +++ + + DTG+G++ + K + F Q+ + + +GTGLGLP+ K +++ + GK Sbjct: 676 KIGDKIKISIIDTGMGISEADQPKVFEKFKQVGETLTDKPKGTGLGLPICKQIIEHHGGK 735 Query: 792 FYIFSTPAKGTLIEIIFPL 810 ++ S KG+ I PL Sbjct: 736 IWVESELGKGSNFSFILPL 754 >gi|163745614|ref|ZP_02152974.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex HEL-45] gi|161382432|gb|EDQ06841.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex HEL-45] Length = 696 Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 106/397 (26%), Positives = 196/397 (49%), Gaps = 48/397 (12%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 RK+ E +++ +EA G + N +GI++ N ++ Y + KP + + + Sbjct: 300 RKLAEERLRMG--IEALDHGFVMYNAKGILVLCNEKYREIHDYSE---VVKPGSSYEKIV 354 Query: 505 TPSVMNHYLTEILSLD---LRQTLEKITLGSTK-EEKLLSLRIII---KKLPFSSCYSLT 557 S+ + + + + +R LEK G+ + E+++ RII +++ S L Sbjct: 355 RDSIRRGIVPDAVGKEEEWIRVWLEKRENGAFETEQRMPDGRIIRTSDRRMEDGSVVGLR 414 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D+++ K+ A AE + K+DF+ +SHE+RTPLT I+G + ++ P Sbjct: 415 I-DVTDLKK-------ALLTAEDANKAKTDFMGVLSHELRTPLTVILGHVRLARHFDRTP 466 Query: 618 L---------GNPRYIE---------------YANYIDRSGNLVLDIVNDLLDISKIESG 653 +P+ E ++RSGN +L ++N++LD +KI++G Sbjct: 467 AARDLSTAIDADPQTRETLAPKLATTLSKLGDIMQTVERSGNHLLTLINEVLDFAKIDAG 526 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713 +++ EPV +D+ V+ + ++ +K + ++ A + +LAD + ++QI +N+LS Sbjct: 527 SLSITMEPVQIDDIVAPTVDQLRPMIEDKGLELKVKSATGV--MLADGKRIQQILINLLS 584 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 NA F+ G I T E V RV DTG+G+ ELE+ +PF Q+ ++ R G Sbjct: 585 NATKFSDQG--TISLTCRIRGEVVEFRVTDTGIGIPENELERVFEPFHQVDSTATRRFGG 642 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 TGLGL +++ + A+ G S KG+ + PL Sbjct: 643 TGLGLAISRDIATAHGGSLVATSIIGKGSSFLLTLPL 679 >gi|317151756|ref|YP_004119804.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316942007|gb|ADU61058.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 1095 Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/267 (31%), Positives = 135/267 (50%), Gaps = 19/267 (7%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E K + L AK++AE S KS+FLA +SHEIRTPL ++G ++ + R Sbjct: 699 ERKANERDLLKAKELAEAASRSKSEFLANMSHEIRTPLNGVLGMLQLAQTTRLDA----- 753 Query: 623 YIEYANYID---RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 E +++D SG +L I+ND+LD SKIE+GK+ + EP SL + + ++ + A Sbjct: 754 --EQRDFVDTALASGRSLLAIINDILDFSKIEAGKLEVITEPFSLTPFLDDVLTTFRGEA 811 Query: 680 NEKRILIRTSFANNIPRILADLRS-VKQIALNILSNAIHFTPSGGQIIISTT------HT 732 +K + + P L +S V+QI N++ NAI FT G + IS Sbjct: 812 RDKGLTLAVDIWPGTPEHLTGGKSRVRQILFNLVGNAIKFTDQ-GSVTISVCPLGPDPRD 870 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++ V DTG+G+ + ++ +PF Q+ S R +G GLGL + K ++ G Sbjct: 871 GRTRLLFSVSDTGIGIPDAMVDLIFEPFTQVDGSYMRRHQGAGLGLGIVKRLIGLLGGSM 930 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHPHDC 819 I S +GT + ++ +D++ D Sbjct: 931 CIDSKTGRGTTLHVVLG-FDSATQADA 956 >gi|121705970|ref|XP_001271248.1| sensor histidine kinase/response regulator, putative [Aspergillus clavatus NRRL 1] gi|119399394|gb|EAW09822.1| sensor histidine kinase/response regulator, putative [Aspergillus clavatus NRRL 1] Length = 2333 Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 128/247 (51%), Gaps = 12/247 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K + + H K+ E + KS FLA +SH++RTP+ +IG SE++K N Sbjct: 1868 KVAEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELLKGTNL----NKEQD 1923 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EY I + +L ++ND+LD SK+E+GKM + P+++ E +SE + ++ Y + R Sbjct: 1924 EYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIRETISEVVRALR-YTHRDRG 1982 Query: 685 LIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVI 738 L + +P +L D + QI +N+LSN+ FTP G + +S + Sbjct: 1983 LETIEDLDKVPPDLVVLGDPVRLHQIFMNLLSNSYKFTPKGSITVRAKVSREGKGRLRLE 2042 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFST 797 V DTG+G+ + + KPF Q +S G+GLGL + KA++ D G ++ ST Sbjct: 2043 CAVSDTGIGIPEEQKSRLFKPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDST 2102 Query: 798 PAKGTLI 804 P GT + Sbjct: 2103 PGVGTTV 2109 >gi|165938304|ref|ZP_02226862.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str. IP275] gi|166009958|ref|ZP_02230856.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str. E1979001] gi|166211542|ref|ZP_02237577.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str. B42003004] gi|167400347|ref|ZP_02305860.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419557|ref|ZP_02311310.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str. MG05-1020] gi|294503231|ref|YP_003567293.1| two component sensor kinase/response regulator protein RcsC [Yersinia pestis Z176003] gi|165913682|gb|EDR32301.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str. IP275] gi|165991354|gb|EDR43655.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str. E1979001] gi|166207313|gb|EDR51793.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str. B42003004] gi|166962298|gb|EDR58319.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050296|gb|EDR61704.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str. UG05-0454] gi|262361270|gb|ACY57991.1| two component sensor kinase/response regulator protein RcsC [Yersinia pestis D106004] gi|262365193|gb|ACY61750.1| two component sensor kinase/response regulator protein RcsC [Yersinia pestis D182038] gi|294353690|gb|ADE64031.1| two component sensor kinase/response regulator protein RcsC [Yersinia pestis Z176003] Length = 926 Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 133/256 (51%), Gaps = 7/256 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 421 VLVDVSARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 479 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 480 PQGVDRLVTAMN---NSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYL 536 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +KR+ + ++PR++ D ++Q+ N+L+NAI FT +G II + Sbjct: 537 PLVVKKRLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG--CIILQVRVRDC 594 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + RVRDTGVG+ + E+ + PF Q+ Q +GTGLGL + + +V+ G + Sbjct: 595 YLEFRVRDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVI 654 Query: 796 STPAKGTLIEIIFPLY 811 S G++ I PLY Sbjct: 655 SELGMGSIFAIRIPLY 670 >gi|301022436|ref|ZP_07186318.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 69-1] gi|300397537|gb|EFJ81075.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 69-1] Length = 933 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 83/262 (31%), Positives = 134/262 (51%), Gaps = 7/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 426 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 484 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 485 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 541 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ T + Sbjct: 542 PLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRTDGD 599 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 600 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 659 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ + PLY +P Sbjct: 660 SEPGMGSQFTVRIPLYGAQYPQ 681 >gi|296122574|ref|YP_003630352.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus DSM 3776] gi|296014914|gb|ADG68153.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus DSM 3776] Length = 758 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 83/269 (30%), Positives = 139/269 (51%), Gaps = 30/269 (11%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 N++ ++A++ + KSDFLA +SHEIRTPLTAI+GF+E I+ + + + + Sbjct: 175 NEVRRQMEVADRANRAKSDFLAHMSHEIRTPLTAILGFAESIQKEE---VSAAEHRSAVD 231 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKM---NLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I R+G +L ++ND LD+SKIE+G++ L P+ + +E + L + +R+ Sbjct: 232 TILRNGEHLLSLINDTLDLSKIEAGRLTIEQLECRPLVI---AAEVLQLFRSRLKSQRVQ 288 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-------TSNEE- 736 + +P I++D ++QI +N++ NA+ FT SG I++ T E Sbjct: 289 LELKGEGLLPEMIVSDPTRLRQILMNLVGNAVKFTESGIVRIVARVRKPPSNPVTGGSEK 348 Query: 737 ------------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 ++L V+D+G+GMT LEK PF Q S R GTGLGL +++ + Sbjct: 349 SANHGHDNAPARLVLEVQDSGIGMTEALLEKLFTPFTQAETSTVRRFGGTGLGLSISRQL 408 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 G + S KG++ + PL + Sbjct: 409 ARLLEGDLTVRSEFGKGSVFTLELPLIGS 437 >gi|259907954|ref|YP_002648310.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Erwinia pyrifoliae Ep1/96] gi|224963576|emb|CAX55066.1| Sensor kinase protein RcsC [Erwinia pyrifoliae Ep1/96] gi|283477834|emb|CAY73750.1| Two component sensor kinase/response regulator protein RcsC [Erwinia pyrifoliae DSM 12163] Length = 992 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 85/264 (32%), Positives = 138/264 (52%), Gaps = 11/264 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG +++K + P G Sbjct: 487 DVSARVKMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTKAL-PAG 545 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 546 ADSLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLAMV 602 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +KR+ + +++P L D ++Q+ N+L+NAI FT +GG II + + + Sbjct: 603 VKKRLTLWCFIDSDVPVALDGDPMRLQQVISNLLNNAIKFTHTGG--IILQAYVKGDYLA 660 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 RVRD+GVG+ E+ + PF Q+ + Q +GTGLGL + + +++ G + S P Sbjct: 661 FRVRDSGVGIPAKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLMNMMDGDIEVESEP 720 Query: 799 AKGTLIEIIFPLYD----TSHPHD 818 G+ + PLY+ T P D Sbjct: 721 GMGSQFIVRIPLYNSRVVTLEPRD 744 >gi|224584097|ref|YP_002637895.1| two-component sensor kinase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468624|gb|ACN46454.1| putative two-component sensor kinase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 920 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 81/256 (31%), Positives = 129/256 (50%), Gaps = 17/256 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L+ AKK AE+ + KS L +SHE+RTP+ ++G E+++ P IE Sbjct: 377 ERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQT-------TPLNIE 429 Query: 626 YANYIDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 D + N +L I+N+LLD S+IESG LH E +L + +A+ +Q A K Sbjct: 430 QQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSK 489 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ +RT ++P D ++QI +N+L NA+ FT +GG I T E++I V Sbjct: 490 KLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG--IRLTVKRHEEQLIFLV 547 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G G+ E + F Q + Q GTG+GL +A ++ G + S P G Sbjct: 548 SDSGKGIEIQEQSQIFTAFYQADTNSQ----GTGIGLTIASSLAKMMGGNLTLKSVPGVG 603 Query: 802 TLIEIIFPLYDTSHPH 817 T + ++ PL + P Sbjct: 604 TCVSLVLPLQEYQPPQ 619 >gi|254447054|ref|ZP_05060521.1| multi-sensor hybrid histidine kinase [gamma proteobacterium HTCC5015] gi|198263193|gb|EDY87471.1| multi-sensor hybrid histidine kinase [gamma proteobacterium HTCC5015] Length = 821 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 132/248 (53%), Gaps = 7/248 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +++ KL A + + +S+F+A +SHE+RTPL ++IGFS V+ R L + + Sbjct: 303 QRQALKLEQANQELLEADRLRSEFVANMSHELRTPLNSVIGFSSVLMKNRNQSL-LEKDL 361 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I R+G +L ++ND+LD+SKIE+G+M + PV + + V + ++Q A K + Sbjct: 362 NFVEKIHRNGKHLLSLINDILDLSKIEAGRMEVELRPVLVQDVVRDTSEMLQTQAEAKNV 421 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VR 742 +R ++P I D ++Q+ +N++ NA+ FT G T E LR V Sbjct: 422 ALRVEGQLDLPYIQTDGDKLRQVLINLVGNALKFTERGS----VTLKVGVESQWLRIDVI 477 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ +L +PF Q + GTGLGL + +++V+ G+ + S +G+ Sbjct: 478 DTGIGIAEDKLMTVFEPFRQADAGTTRQYGGTGLGLAITRSIVEMLDGRVELDSVQGQGS 537 Query: 803 LIEIIFPL 810 + P+ Sbjct: 538 TFSVYLPM 545 >gi|34497076|ref|NP_901291.1| sensor/response regulatory hybrid protein [Chromobacterium violaceum ATCC 12472] gi|34102933|gb|AAQ59297.1| probable sensor/response regulatory hybrid protein [Chromobacterium violaceum ATCC 12472] Length = 1748 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 137/249 (55%), Gaps = 10/249 (4%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+E + + L AK+ AE+ S KS FLA +SHEIRTP+ A++G +++++ R Sbjct: 1001 RDITETRAYEQNLLEAKRQAEEASMVKSQFLANMSHEIRTPMNAVLGLLQLMQHTRL--- 1057 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + R ++Y I + +L ++ND+LD SKI++GK+ L P L+ + E ++ Sbjct: 1058 -DERQLDYVGKIQAAAKSLLGLLNDILDFSKIDAGKLQLDLHPFDLEGLMRELAVVLSGN 1116 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-- 735 N+K + + +P +L D ++QI +N+ NA+ FT + GQ++++ + Sbjct: 1117 TNDKDVEVLFRMEPTLPAMLIGDKLRLQQILINLAGNALKFT-TQGQVVLAVRERARREG 1175 Query: 736 EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 EV LR V DTG+G+ +L + + F Q S R GTGLGL +++ +V+ G+ Sbjct: 1176 EVELRIEVSDTGIGIAPEQLSRIFEGFTQAEASTTRRFGGTGLGLVISRRLVELMGGQLR 1235 Query: 794 IFSTPAKGT 802 + S G+ Sbjct: 1236 VESQLGCGS 1244 >gi|21232279|ref|NP_638196.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767587|ref|YP_242349.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. 8004] gi|188990703|ref|YP_001902713.1| Two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. campestris str. B100] gi|21114044|gb|AAM42120.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572919|gb|AAY48329.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. 8004] gi|167732463|emb|CAP50657.1| Two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. campestris] Length = 1186 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 79/270 (29%), Positives = 138/270 (51%), Gaps = 11/270 (4%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 ++ Y + ++W+ + H +++AE+ S K+ FLA + HE+RTP+T ++G SE+ Sbjct: 777 LAAAYRRRVRMRAQWQLAQ----HKRELAEQASQAKTRFLATLGHEVRTPMTGVLGMSEL 832 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + PL + R YA+ I +G +L +VND LD+++IE+GK+ L L + + Sbjct: 833 LLQT---PL-DGRQQGYASAIQSAGKHLLRLVNDALDLARIEAGKLALDDRDFDLRQLIR 888 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIII 727 + + LV+ A +K++ ++PR L D V+QI LN+L NA+ FT G ++ + Sbjct: 889 QVVDLVRPSAEQKQLAFECHLDESLPRALHGDANRVQQILLNLLFNAVKFTERGQVRLRV 948 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ-QIRGEGTGLGLPLAKAMVD 786 + + V DTG GM+ + + + F Q + R G+GLGL + + + Sbjct: 949 LPLQAGGGGIRVEVSDTGPGMSEEQRGRLFQRFEQAEGGRTTTRHGGSGLGLAICRELAA 1008 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 A G + S +G + PL S P Sbjct: 1009 AMGGSVGVSSALGQGACFVVELPLRWVSTP 1038 >gi|172058878|ref|YP_001815338.1| PAS/PAC sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171991399|gb|ACB62321.1| PAS/PAC sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 714 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 100/369 (27%), Positives = 178/369 (48%), Gaps = 38/369 (10%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 SIL+A+++G + +G N KL P PS + ++ Sbjct: 361 SILQASNEGFLLTGEDGSFTYMNVKARKLLDVP--------------GIAPSKIQERISM 406 Query: 516 ILSLDLR------QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569 I +LDL Q +E++ G E +S R +++ P S + + K+E++ Sbjct: 407 IPNLDLATRYAMLQQVEELLAGKHSE---ISFRFTLQQ-PDESGHHYFEFYATSIKKERS 462 Query: 570 KLSH-------AKKIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 + S + E++ H K + ++ VSHE+RTPL++I+GF E+++ ++ P Sbjct: 463 RFSRHGFLFVFRDRTEEQKMDHVKDELISTVSHELRTPLSSILGFMELLRYRQPTPEKTT 522 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 RY+E + + +++ND LDI ++E GK + F+P SL + + E I A Sbjct: 523 RYVE---IVHEEAKRLTNLLNDFLDIQRMEGGKQDYAFKPFSLRQLLEETIETFGETAET 579 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 I T ++ I AD VKQ+ +N+LSNAI ++P+ I + T++ + IL V Sbjct: 580 HTIHAVTD--DDPILIFADEDKVKQVIINLLSNAIKYSPAADHIDVRLEKTAD-QAILSV 636 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D G+G+ +K F ++ NS + GTGLGL + K +++++ G + S +G Sbjct: 637 TDYGIGIPPTAFDKLFTKFYRVDNSAVRKIGGTGLGLAICKEIIESHGGAISVESELNQG 696 Query: 802 TLIEIIFPL 810 + I+ L Sbjct: 697 STFTIVLEL 705 >gi|186684867|ref|YP_001868063.1| multi-component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467319|gb|ACC83120.1| multi-component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 989 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 93/370 (25%), Positives = 178/370 (48%), Gaps = 24/370 (6%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 + IL+ D I IN I N+ K+FGY ++++ + + L Q + Sbjct: 595 RFARILDIADDAIISINGFHNITLFNQGAEKIFGYCAQEVIGQGLDLLLPQRFFQAHRQH 654 Query: 513 LTEIL---SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQE 567 + + ++ R + G K+ I K+ Y++ + D++E KQ Sbjct: 655 VADFGQSPNVARRMGERREIYGRRKDGSEFPAEASISKIDMGDEIFYTVILRDVTERKQI 714 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + K +F++ VSHE+RTPLT+I G ++ + P + + Sbjct: 715 ER--------------MKDEFVSVVSHELRTPLTSIYGSLGMLASGLL-PTDSEQGKRLL 759 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 S ++ ++ND+LDI +IESGK + E ++ + +++A++++Q A++ + + Sbjct: 760 QIAADSTERLVRLINDILDIERIESGKAKMEAEICNIVDLITQAVNVIQPLADKAGVTLS 819 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 S + ++LAD + Q N+LSNAI F+ +G + + +EV+L ++DTG G Sbjct: 820 ISALSG--QVLADCDRIVQTLTNLLSNAIKFSSAGSTVWLGAQQ-EGDEVLLTIKDTGRG 876 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +LE + F Q+ +S +GTGLGL + K+++ + G+ + S +G+ + Sbjct: 877 IPTDKLESIFERFQQVDSSDSRNHDGTGLGLAICKSIMQQHGGRIWAESILGEGSTFYVT 936 Query: 808 FPLYDTSHPH 817 PL+ T PH Sbjct: 937 LPLFGT-FPH 945 >gi|238786285|ref|ZP_04630227.1| Signal transduction histidine-protein kinase barA [Yersinia bercovieri ATCC 43970] gi|238712808|gb|EEQ04878.1| Signal transduction histidine-protein kinase barA [Yersinia bercovieri ATCC 43970] Length = 911 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 126/237 (53%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A K A++ + KS+FLA +SHE+RTPL +IGF+ Q P +Y Sbjct: 268 ELGLANKRAQEAARIKSEFLANMSHELRTPLNGVIGFTR----QTLKTSLTPTQTDYLQT 323 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RS N +L I+ND+LD SK+E+ K+ L P SL + E I L+ A+EK + + Sbjct: 324 IQRSANNLLCIINDVLDFSKLEAEKLILEHIPFSLRSTLDEVIILLAHTAHEKGLELTLH 383 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 N++P +++ D ++QI N+L NAI FT G I+ T + +++ ++DTG Sbjct: 384 INNDVPEQVVGDAMRLQQIVTNLLGNAIKFTEQGNIDILVTAQVLTAQRVTLVVEIQDTG 443 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++ + + + F Q S R GTGLGL + + +V G S +G+ Sbjct: 444 IGISESQQAQLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFLSQVDRGS 500 >gi|237748723|ref|ZP_04579203.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] gi|229380085|gb|EEO30176.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] Length = 580 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 88/264 (33%), Positives = 139/264 (52%), Gaps = 20/264 (7%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + KLS + AE S KS+FL+++SHEIRTP+ IIG +++ + L N +E + Sbjct: 180 QKKLSQDLQYAENASKEKSEFLSKMSHEIRTPMNGIIGMTKIARM----SLENREKLEDS 235 Query: 628 -NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-- 684 N +D S +L ++ND+LD+++IESGK+ L + +L + + + A +K I Sbjct: 236 LNKLDMSSQFLLALINDILDMARIESGKVELVEKEFNLLQMLDNIEIMFAQRAADKNIDF 295 Query: 685 -LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-------SNEE 736 LI+ ++ D + QI +NI+SNAI FTPSGG+II+ T N E Sbjct: 296 RLIKRGLTGQ--ALIGDELRITQIIINIVSNAIKFTPSGGEIILEVRQTPTDTSRYVNLE 353 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 I V DTG+GM+ ++ +PF Q + + G GTGLGL + + +V G + S Sbjct: 354 FI--VSDTGIGMSEEFMKHMFEPFEQEKQTVRQYG-GTGLGLAICQNLVKMMHGTMSVNS 410 Query: 797 TPAKGTLIEIIFPLYDTSHPHDCI 820 P +G+ + L H + I Sbjct: 411 LPGEGSTFTVRLGLEQMDHENPVI 434 >gi|239624738|ref|ZP_04667769.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521124|gb|EEQ60990.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 806 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 82/263 (31%), Positives = 134/263 (50%), Gaps = 11/263 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I + +Q K L A + AE + K+DFL+++SH+IRTP+ AIIG +++ R Sbjct: 390 IEKERQAKQLLEEALQKAENANHAKNDFLSKMSHDIRTPMNAIIGMTQL---ARLHTGEE 446 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 R +Y I + +L ++N++LD+SKIESG + L +L+ + + + +V++ + Sbjct: 447 KRLKDYLEKIANASTHLLSLINEVLDVSKIESGTVKLEENEFNLNHLLEDVVEMVRISLD 506 Query: 681 EKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIII------STTHTS 733 +K + + P++L D R +KQI +NIL NA +TP G+I I T T Sbjct: 507 QKCQSLSVHIEEGLHPQVLGDERRLKQILVNILDNASKYTPEDGRISIRLNELNKMTQTM 566 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + + DTG+GM +E +PF + +S+ + GTGLG+ + K +V G Sbjct: 567 GTYCFI-IEDTGIGMKPEYIEHIFEPFSRADDSRTSKTVGTGLGMTIVKNLVSMMGGDIQ 625 Query: 794 IFSTPAKGTLIEIIFPLYDTSHP 816 I S GT I L P Sbjct: 626 IESEYGNGTRFLITLTLTKCGAP 648 >gi|110833833|ref|YP_692692.1| phosphotransferase-histidine kinase family protein [Alcanivorax borkumensis SK2] gi|110646944|emb|CAL16420.1| phosphotransferase-histidinkinase, family protein [Alcanivorax borkumensis SK2] Length = 867 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 131/236 (55%), Gaps = 9/236 (3%) Query: 572 SHAKKI-AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 S+++ I A ES KS FLAR+SHEIRTPL +IG +E+++ P +PR EY + I Sbjct: 356 SNSRAINARAESQAKSLFLARMSHEIRTPLNGVIGLAELLRETD--P--SPRQQEYISLI 411 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 D +G + ++ND+LD +KIE+GK+ L E L ++E + + L A++ L+ Sbjct: 412 DSAGRTLTALINDVLDFAKIEAGKLELVEEHFDLPVLLAECVQMFNLPASDNGTLVILDV 471 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---RVRDTGV 746 P ++ D ++QI +N++ NA+ FT +G ++ E L V DTG+ Sbjct: 472 DPQTPSDVVGDAIRLRQILINLVGNAVKFTRNGRVVLSLVCRRQYGEAPLYTFSVADTGI 531 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G++ E + + F Q + R GTGLGL +++ +V+ G+ ++ S P +G+ Sbjct: 532 GLSQVEQAQLFQRFTQASANTAQRYGGTGLGLSISRELVELMGGEIHVHSAPGQGS 587 >gi|83594821|ref|YP_428573.1| Cache sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC 11170] gi|83577735|gb|ABC24286.1| Cache sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC 11170] Length = 1041 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 124/234 (52%), Gaps = 10/234 (4%) Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 +FLA +SHEIRTP+ A+IG + ++ + GPL PR I+YA I RSG +L ++ND+LD Sbjct: 507 EFLATMSHEIRTPMNAVIGMTGLLLD---GPL-EPRQIDYARTIQRSGEHLLGLINDILD 562 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVK 705 S+I++G++ L SL V +SL + A+ KR+ +R + P D + ++ Sbjct: 563 FSRIDTGRLVLVDRDFSLSHEVQAVVSLCGVAASAKRLSVRIDLDRALAPGYRGDSQRLR 622 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVI----LRVRDTGVGMTNYELEKAMKPFG 761 QI +N++ NA+ FT G + + E I LRV DTG G+ F Sbjct: 623 QILVNLVGNAVKFTDK-GMVTVQGDVLKIENDIHWLRLRVVDTGCGIPRERFNDLFAAFQ 681 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 Q+ S GTGLGL +++ + G + STP +G++ ++ P+ S Sbjct: 682 QLDGSATRTHGGTGLGLAISRKLARLMGGDITVSSTPGEGSVFSVVVPMVPLSR 735 >gi|302325536|gb|ADL24737.1| sensor histidine kinase/response regulator [Fibrobacter succinogenes subsp. succinogenes S85] Length = 1405 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 86/263 (32%), Positives = 142/263 (53%), Gaps = 19/263 (7%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE- 625 ++ L A ++A+ S K+ FL +SH+IRTP+ AIIG++E+ +GN + Sbjct: 879 QQAALEQALEMAKSASRAKTMFLNNMSHDIRTPMNAIIGYTELATIH----IGNKEQVRN 934 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + I+ S N +L ++ND+LD+S+IESGK+NL+ + L E + +VQ N K + Sbjct: 935 FLGKIELSSNHLLSLINDVLDMSRIESGKLNLNEKLEHLPEIIHTLKDIVQADINAKNLQ 994 Query: 686 IRTSFANNI----PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----- 736 FAN++ ++ D + Q+ LN++SNAI +TP+GG I S ++E Sbjct: 995 F---FANSVGIRNEDVVCDRLRLNQVLLNVISNAIKYTPAGGSIWFSVEQKESDEDGYGV 1051 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG-EGTGLGLPLAKAMVDANMGKFYIF 795 R++D+G+GM+ L K F ++ NS + G +GTGLG+ + K +VD G I Sbjct: 1052 YEFRIKDSGIGMSEDFLPKIYDAFTRV-NSSTVSGIQGTGLGMAITKNIVDMMDGSIDIK 1110 Query: 796 STPAKGTLIEIIFPLYDTSHPHD 818 S +GT + + F H+ Sbjct: 1111 SKVDEGTDVVLNFKFALAGAEHE 1133 >gi|192289852|ref|YP_001990457.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192283601|gb|ACE99981.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 1122 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 98/343 (28%), Positives = 168/343 (48%), Gaps = 24/343 (6%) Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 +F V I F ++L+ T + E ++L + L K+ T ++S Sbjct: 572 VFAVSVGLIGLSLFLIYLQVATAN-------EAQQIELAEILWKLFFAVTIIVGVVSWLF 624 Query: 544 IIKKLPFSSCYS-------LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 ++ +L + + L M +I +Q +L AK+ AE + KS ++ +SHE+ Sbjct: 625 VLARLSRQAAEAETRRQTQLLMQEIDAHRQTDAELQRAKEAAESANLAKSRYVVGLSHEL 684 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 R+PL AI G++++++ P PR + + RS + + +++ LLDISKIE+G++ Sbjct: 685 RSPLNAISGYAQLLEQDNTLP---PRPRDQIRLMRRSADHLSGLIDGLLDISKIEAGRLY 741 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNA 715 L + V E + + + + +L A K I + P + AD + ++Q+ +N+LSNA Sbjct: 742 LSRDEVRFGEFLDQLVGMFRLQAAAKDIEFVFKRPQYLPPMVYADEKRLRQVLINLLSNA 801 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF--GQIPNSQQIRGEG 773 I FT G I H N L VRDTG G+ +LE+ PF G + +Q G Sbjct: 802 IKFTQEGSVHFI--VHYRNPVAELEVRDTGPGIHTDDLERIFAPFERGALGAAQP--HSG 857 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 TGLGL ++K + G + STP KG+ + L + ++P Sbjct: 858 TGLGLTISKLLAGVMGGDLTVTSTPDKGSTFRVKLLLSEVTNP 900 >gi|126659304|ref|ZP_01730440.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] gi|126619386|gb|EAZ90119.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] Length = 649 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 101/363 (27%), Positives = 174/363 (47%), Gaps = 19/363 (5%) Query: 464 GIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDL 521 G+ +NR G IL N + K+FGY E++ + + LE P V + ++ ++ Sbjct: 148 GLYRLNRAGEILEANPTLMKMFGYEKREELFNQNLANYHLE---PDVYRQWQQQLGQVEA 204 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQ---EKNKLSHAKK 576 ++ E +E +S + I K Y + DI+ KQ E+ +L H + Sbjct: 205 KEDFEGRIRNHQQEIIWVSHKAIAVKDKKGEIIGYEGAIADITASKQAELERIQLLHEAR 264 Query: 577 IAEKESSH----KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A++E+ K +FLA +SHE+RTPL AIIG+ +++ R G L ++ I+R Sbjct: 265 QAQEEAERLNHVKDEFLATLSHELRTPLNAIIGWMQLL---RSGTLNEDQFNTGLEVIER 321 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 + N+ ++ DLLD+S+I G + L +P+++ + +I V A K I I ++ Sbjct: 322 NANVQTQLIEDLLDVSRIICGTLKLEAQPINVISVILSSIDTVSPTAKAKNININLQLSS 381 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 I D ++Q+ N+L NA+ FTP G I I +N+ +R+ DTG G++ Sbjct: 382 QTIEINGDKERLQQVFWNLLINAVKFTPIDGSITIEGGEENNQMAFIRITDTGKGISGDV 441 Query: 753 LEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTPA-KGTLIEIIFPL 810 L F Q + R + G GLGL + + +V+ + G S KG+ + P+ Sbjct: 442 LPHIFDRFRQAEHKSSTRTQGGLGLGLAIVRHIVEMHGGSVMAESEGIDKGSTFTVELPV 501 Query: 811 YDT 813 + Sbjct: 502 IQS 504 >gi|121608695|ref|YP_996502.1| integral membrane sensor hybrid histidine kinase [Verminephrobacter eiseniae EF01-2] gi|121553335|gb|ABM57484.1| integral membrane sensor hybrid histidine kinase [Verminephrobacter eiseniae EF01-2] Length = 1195 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 134/243 (55%), Gaps = 9/243 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q + A++ A++ + KS +++ +SHE+RTPL +I+G+++++ P P+ Sbjct: 705 EQARQVAEAAQRAADQANQAKSRYISAISHELRTPLNSILGYAQLMSED---PGLPPQRQ 761 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + + I R G +L ++ LDI++IESGK+ L P+ + + E SL +L A K + Sbjct: 762 QAVHVIRRGGEHLLSLIEGTLDIARIESGKLTLEVAPMRFADGLREMASLFELQAAAKGL 821 Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 R +P ++ AD + ++QI +N+L NAI FT + GQ+ + H + E + V+D Sbjct: 822 AFRFEPQGALPEVVRADEKRLRQILINLLGNAIKFT-TQGQVTLRVRH-AREMARIEVQD 879 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG G+T +E+ +PF + + G GLGL +AK + G+ + S P G++ Sbjct: 880 TGPGLTASAIERIFEPFTRAGAADT---PGAGLGLTIAKMLTALMGGELTVSSQPGVGSV 936 Query: 804 IEI 806 ++ Sbjct: 937 FQV 939 >gi|330448474|ref|ZP_08312122.1| his Kinase A domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492665|dbj|GAA06619.1| his Kinase A domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 576 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 127/238 (53%), Gaps = 7/238 (2%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AKK AE+ DFLA ++HE+RTPL ++G +E++ + + ++ ++ S Sbjct: 203 AKKRAEESEQSTRDFLAMINHELRTPLNGLLGSAELLHDTSL----DTHQLKLLTTLNHS 258 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G L+ I+NDLLD SKI +G + L +P ++ + ANEKR+ +A + Sbjct: 259 GELLRAIINDLLDYSKINAGMLELIEKPFDSHLLATKLEDIFTHKANEKRLDFNIYYAPD 318 Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 +P ++ D +KQI +N++SNAI FT G + + ++++ VRD+G G+ + Sbjct: 319 LPAALIGDEDRIKQIFVNLISNAIKFTSDG--FVHAKLWWEDQKLQFSVRDSGCGIDQAD 376 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 K KPF Q+ + + EGTGLGL + K + + G + S+ +G +I PL Sbjct: 377 QHKLFKPFSQVDITSKRSHEGTGLGLVICKQLCEQMGGSIRVESSLGRGACFQISLPL 434 >gi|237746436|ref|ZP_04576916.1| response regulator receiver domain-containing protein [Oxalobacter formigenes HOxBLS] gi|229377787|gb|EEO27878.1| response regulator receiver domain-containing protein [Oxalobacter formigenes HOxBLS] Length = 994 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 88/262 (33%), Positives = 138/262 (52%), Gaps = 23/262 (8%) Query: 556 LTMHDISEWKQEKNK----LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 T D++E K E+ + L A AE S KSDFL+ +SH+IRTP+ AI+G + + Sbjct: 445 FTRQDVTETKAEQLRNHIALKEAFLAAENASRAKSDFLSNMSHDIRTPMNAIMGMTAIAA 504 Query: 612 NQRFGPLGNPRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + P YI+ I S +L ++ND+LD+S+IESGK+ L E L V Sbjct: 505 MH----VNEPAYIQDCLGKITLSSRHLLKLINDILDMSRIESGKVFLVEETFVLPTMVEA 560 Query: 671 --AISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 AISL Q+ A +++ + AN + ++ D ++Q+ +NI+ NA+ FTP GG I + Sbjct: 561 LLAISLPQIRAKNQQL--KVQIANIVHEEVVGDPLRLQQVCINIMGNAVKFTPEGGHIAL 618 Query: 728 STTHT-------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 T E + D G+GM L++ +PF + NS+ + EGTGLG+ + Sbjct: 619 QITEKPCSLHGFGCYEFVFG--DDGIGMEKEFLDRIFEPFVRADNSRVRKAEGTGLGMSI 676 Query: 781 AKAMVDANMGKFYIFSTPAKGT 802 A+ +V G ++S P KG+ Sbjct: 677 ARNIVRMMNGDIEVWSEPGKGS 698 >gi|75906587|ref|YP_320883.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75700312|gb|ABA19988.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1184 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 121/219 (55%), Gaps = 4/219 (1%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE + K +FLA +SHE+R+PL I+G+S +++ ++ P + +E I+R+ L Sbjct: 809 AEAANRIKDEFLAVLSHELRSPLNPILGWSRILRTKQLSPTKVDQALET---IERNAKLQ 865 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 ++ DLLD+S+I GKM L+ PV+L ++ A+ VQL A K I I+T+ + Sbjct: 866 AQLIEDLLDVSRILQGKMTLNVAPVNLAATITAALETVQLAAEAKNIHIQTTLKPIAGNV 925 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 + D ++Q+ N+LSNA+ FTPSGGQI + N ++V+D+G G+ L Sbjct: 926 VGDQNRLQQVIWNLLSNAVKFTPSGGQIEVQLAQV-NLYAQIQVKDSGKGIAREFLPYVF 984 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + F Q + + G GLGL + + + + G ++ S Sbjct: 985 EYFRQEDGATTRKFGGLGLGLAIVRHFTELHGGTVHVSS 1023 >gi|86751073|ref|YP_487569.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] gi|86574101|gb|ABD08658.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] Length = 1158 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 100/377 (26%), Positives = 190/377 (50%), Gaps = 43/377 (11%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +ILE + + N +G I N A ++ GY E+++ + +++ H E Sbjct: 511 AILERAAYAVIATNVDGTITLFNPAAERMLGYKAEELIGR---------ATAMLFHDPQE 561 Query: 516 ILSLDLRQTLEKITLGSTKE--EKLLS--------------------LRIIIKKLPFSSC 553 +L + I +GS + + LL+ +R+ + +L Sbjct: 562 LLDRADAMRRQGIEVGSGQRVVQALLAHNDPDTSLWTYVGKTGNRIPVRLTLCRLRTKDG 621 Query: 554 YSLTMH----DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 L + D++E + +++L A+ AE+ + K+DFLA +SHEIRTPL IIG++++ Sbjct: 622 TDLGVLGIAVDLTEQLKYEDELKAARASAEQAGAAKADFLANMSHEIRTPLNGIIGYADL 681 Query: 610 -IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 +++Q P R +E + S +L + I++D+LD SKIE+ + L +P+ L E + Sbjct: 682 ALEDQTLVPT-TRRQVE--RIFEASDSLRV-IIDDILDFSKIEACGLKLESKPLYLTELI 737 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIII 727 +S++Q A EK + + + + ++ D ++Q+ LN+++NA+ FT +G ++I+ Sbjct: 738 DNCVSIIQPKAEEKGLKLLATARDTPAVLMGDAARLRQVLLNLMNNAVKFTSAGSVELIV 797 Query: 728 STTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 S ++ V LR V DTG+G++ + + K F Q + + GTGLGL +++ +V Sbjct: 798 SCVSRADPMVRLRIAVVDTGIGISKVDQQGLFKRFSQADETISRKYGGTGLGLAISQRIV 857 Query: 786 DANMGKFYIFSTPAKGT 802 A + I S +G+ Sbjct: 858 QAMQSELKIDSDQGRGS 874 >gi|251788450|ref|YP_003003171.1| hybrid sensory histidine kinase BarA [Dickeya zeae Ech1591] gi|247537071|gb|ACT05692.1| Hpt sensor hybrid histidine kinase [Dickeya zeae Ech1591] Length = 922 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 82/237 (34%), Positives = 130/237 (54%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + +Y Sbjct: 276 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTQL----TTTQKDYLQT 331 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L+I+ND+LD SK+E+GK+ L P SL + E I L+ A+EK + + + Sbjct: 332 IERSANNLLNIINDVLDFSKLEAGKLVLENIPFSLHNTLDEVIMLLAHTAHEKGLELTLN 391 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTG 745 +++P + + D ++QI N+L NAI FT G I I N +V+L +++DTG Sbjct: 392 IQHDVPEQFVGDPLRLQQIVTNLLGNAIKFTEQGNIDIRIEKRKQENLQVLLEIQIKDTG 451 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S + GTGLGL + + +V G S P +GT Sbjct: 452 IGIAEAQQTQLFQAFRQADTSISRQHGGTGLGLVITQRLVREMGGDISFHSKPNQGT 508 >gi|222056634|ref|YP_002538996.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. FRC-32] gi|221565923|gb|ACM21895.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. FRC-32] Length = 591 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 118/425 (27%), Positives = 207/425 (48%), Gaps = 50/425 (11%) Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 RS RT A +AR+ ++ +P E +++ E + D+ RI + Sbjct: 196 RSLRTISAIAARIGKGEYGLR-------VPRESSDEVGEL----AVVMNDMSERIEAQLS 244 Query: 448 EI--EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 I E +L +IL +G+ + + +GII N A K+F ED+ +P Q Sbjct: 245 SIMAERNRLDTILRGMGEGLMVTDAQGIITLVNPAFRKVFSVD-EDVEGRPLIEVSRQ-- 301 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-----MHD 560 P++ Y +I++ D + E+++L K+ +L+ +P LT HD Sbjct: 302 PALHAAY-RKIMA-DGIERQEEMSLNGEKDGNILT-----HWVPLIDGNRLTGVVAVFHD 354 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF--GPL 618 IS+ K + ++ + DF+A VSHE+RTP++ I G++E + P Sbjct: 355 ISDLK--------------RLAATRRDFVANVSHELRTPVSVIQGYAETLLAGALESDPD 400 Query: 619 GNPRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 R+I+ N+ +R L+ DLL +S++ESGK+ L P++L AV +A+SL+ Sbjct: 401 RARRFIQVIHNHAERLSALI----ADLLTLSELESGKVLLEPHPLNLRSAVKQAMSLLSQ 456 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A +K I + T +LAD + Q+ +N+L NAI +TP G++ + T E + Sbjct: 457 RATDKGITLDTGNIEASRFVLADKGKLDQVLVNLLDNAIKYTPGNGKVTV-TAEDEAEML 515 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V DTG+G+ +L + + F ++ ++ GTGLGL + K +V ++ G + S Sbjct: 516 KISVTDTGLGIPAKDLPRIFERFYRVDEARSRDKGGTGLGLSIVKHIVQSHGGMISVKSI 575 Query: 798 PAKGT 802 P +G+ Sbjct: 576 PGEGS 580 >gi|16124840|ref|NP_419404.1| sensory box histidine kinase [Caulobacter crescentus CB15] gi|13421786|gb|AAK22572.1| sensory box histidine kinase [Caulobacter crescentus CB15] Length = 716 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 130/229 (56%), Gaps = 9/229 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA ++HE+RTPLT++IGF+E I+ + P +P ++ I G +L +ND+ Sbjct: 352 KSAFLANMTHELRTPLTSVIGFAEQIQAE---PALSPTVRHASDRISAGGRALLSTINDI 408 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRS 703 LD SK+ESG +++ ++ ++E ++L+ + A+ K + + + + A D + Sbjct: 409 LDFSKLESGGVSIVTAATEVNGLIAETVALLSVQADRKGLSLSYDGSAVLGLCAALDSQH 468 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFG 761 V+Q+ LN++ NAI FT GG ++ T N++ +L V DTG+G+ LE+ F Sbjct: 469 VRQVLLNLIGNAIKFTEQGG---VTVTAQRNDDGMLEIAVADTGIGIAEDHLERLFGRFS 525 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 Q+ ++ R G+GLGL + + + +A G+ + ST +G+ + PL Sbjct: 526 QVDDTIARRFGGSGLGLAIGRFLAEAMGGEIQVSSTVGRGSTFTLTLPL 574 >gi|258563454|ref|XP_002582472.1| hypothetical protein UREG_07245 [Uncinocarpus reesii 1704] gi|237907979|gb|EEP82380.1| hypothetical protein UREG_07245 [Uncinocarpus reesii 1704] Length = 2359 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 138/262 (52%), Gaps = 12/262 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ + + H K+ E+ + KS FLA +SH++RTP+T +IG SE++K + + Sbjct: 1866 KEAEAEARHNVKLKEEAAKAKSIFLANISHDLRTPMTGVIGLSELLKQTSL----DRQQD 1921 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 Y I + +L ++ND+LD SK+E+GKM + P++L + ++E + ++ ++ + Sbjct: 1922 VYVESIRVCADTLLTLINDILDFSKLEAGKMKVTTVPLNLRQTIAEVVRALRYTHRDRGL 1981 Query: 685 LIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVIL 739 F + P +L D + QI +N+LSN+ FTP G + + +E V Sbjct: 1982 ETIEDFDDIDPDLLVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVRAKVAEESENTIRVTC 2041 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTP 798 V DTG+G++N + + +PF Q +S G+GLGL + KA++ D GK ++ S Sbjct: 2042 TVADTGIGISNDHMARLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLHSDV 2101 Query: 799 AKGTLIEIIFPLYDTSHPHDCI 820 GT ++ F + P D + Sbjct: 2102 GVGT--KVTFTVTFKKAPPDAV 2121 >gi|257059363|ref|YP_003137251.1| Hpt sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] gi|256589529|gb|ACV00416.1| Hpt sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] Length = 925 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 77/251 (30%), Positives = 138/251 (54%), Gaps = 17/251 (6%) Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 +K+ +++++ K I E + K++F+A + HEIRTPL A+ G + ++ + PL NP+ Sbjct: 242 FKELESQIAKQKTIKEVNQA-KNEFMAMIGHEIRTPLNAVTGMTGLLLD---TPL-NPQQ 296 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 E+ N I SG +L ++N++LD SKIE+ K+ L +P L + E + L A++K+ Sbjct: 297 EEFVNIIRSSGENLLTMINNILDFSKIEAQKLELEEQPFELGLCIEEVLRLFVPQASQKQ 356 Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----------- 731 + + N P I+ D ++QI N+L NA+ FT G ++ + Sbjct: 357 LELAYLIEPNTPSAIVGDSTRLRQILSNLLGNAVKFTEKGEVVVYVSAQPLPNSDRTDKT 416 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 +N E+ V+DTG+G+ + ++ +PF Q+ S + GTGLGL +++ + + GK Sbjct: 417 LANYELRFAVKDTGIGIAPQDCDRLFQPFSQVDASTTRKYGGTGLGLVISQRLSELMGGK 476 Query: 792 FYIFSTPAKGT 802 ++ ST KG+ Sbjct: 477 MWVHSTEGKGS 487 >gi|152991089|ref|YP_001356811.1| two-component sensor histidine kinase/response regulator [Nitratiruptor sp. SB155-2] gi|151422950|dbj|BAF70454.1| two-component sensor histidine kinase/response regulator [Nitratiruptor sp. SB155-2] Length = 1044 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 84/241 (34%), Positives = 128/241 (53%), Gaps = 15/241 (6%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 K AK AE+ S KS FLA +SHEIRTPL IIGF++++KN P E+ N Sbjct: 381 KAQDAKTAAEEASHAKSMFLANMSHEIRTPLNGIIGFTDLLKNTEL----TPEQREFVNI 436 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKM---NLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I++S +L+I+N +LD+SKIES K+ N+ F P+ E AI + A EK I Sbjct: 437 IEKSSENLLEIINAILDLSKIESKKIEIENIVFNPI---EEFENAIEVYAPRAAEKDINF 493 Query: 687 RTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVILRV 741 ++ + L D +K++ +N++SNAI FT GG + + + E+ V Sbjct: 494 ALFVDPHLNKPLKGDPTKIKEVLINLISNAIKFTDRGGNVTVEIRKVKEYNERAEIYFEV 553 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RDTG+G+ + ++ + F Q +S + GTGLGL ++ + G+ + S KG Sbjct: 554 RDTGIGIPEDKQKQIFEAFSQADSSVTRKFGGTGLGLTISSEFIKLMGGRLNLESEVGKG 613 Query: 802 T 802 T Sbjct: 614 T 614 >gi|89096799|ref|ZP_01169691.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911] gi|89088814|gb|EAR67923.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911] Length = 609 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 103/372 (27%), Positives = 173/372 (46%), Gaps = 41/372 (11%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E E +L S+L +DG+ +R G ++ N +K+ P E +L P L Sbjct: 261 EGERRKLSSVLSYMTDGVIATDRRGRVILINEPAAKMLNVPRETVLSSPIVNLLGLEEDY 320 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR----IIIKKLPFSSCYSLTMHDISE 563 L E E + L + E LR +I K+ F + +HDI+E Sbjct: 321 TFEELLAE---------RESVILDYSTETTPYVLRANFSVIQKETGFVNGLITVLHDITE 371 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 QEK L + +F+A VSHE+RTPLT + + E + G + + Sbjct: 372 --QEKIDL------------ERREFVANVSHELRTPLTTMRSYLEALAE---GAMHDEDI 414 Query: 624 I-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 ++ N ++ +VNDLL +SK++S + E V+ + + I ++ E+ Sbjct: 415 APQFLNVTRTETERMIRMVNDLLQLSKLDSKDYRMKKEWVNFVDFFNRIIDRFD-FSKEQ 473 Query: 683 RILIRTSFANNIPRILA----DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + +F N+P A D + Q+ NI+SNA+ ++P GGQ+ + E+++ Sbjct: 474 NV----TFQRNLPEHAAFVEIDEDKLTQVVDNIISNALKYSPEGGQVSFNIVE-QEEQLL 528 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +R+ D GVG+ L+K + F ++ ++ + GTGLGL +AK +V+A+ GK + ST Sbjct: 529 IRISDQGVGIPKDNLDKVFERFYRVDKARTRKLGGTGLGLAIAKEVVEAHDGKIWAESTE 588 Query: 799 AKGTLIEIIFPL 810 KGT I P Sbjct: 589 GKGTTISFTLPF 600 >gi|307297187|ref|ZP_07577000.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] gi|306877411|gb|EFN08642.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] Length = 914 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 81/261 (31%), Positives = 137/261 (52%), Gaps = 10/261 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + ++ + +L AK AE+ + KS FLA +SHEIRTP+ +IG +E++ + R N Sbjct: 371 QLEESETELRAAKNRAEEATRAKSQFLANMSHEIRTPMNGVIGAAELLNDTRL----NAS 426 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 EY I +S + +L ++ND+LD SKIE+G++ L SL + +++ + A EK Sbjct: 427 QREYLTMITQSADALLHLINDILDFSKIEAGRLELEHVAFSLRDELADTLQAFAGRATEK 486 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR 740 I + A ++P L D ++Q+ +N++ NA+ FT G ++ ++ +++ LR Sbjct: 487 GIELACHVALDVPDALEGDPHRLRQVVINLVGNALRFTERGEVVMDVAVERMEDQQAWLR 546 Query: 741 --VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG G+ + + + F Q S R GTGLGL +A +V G+ + S Sbjct: 547 FAVSDTGPGIAADKRKLIFEAFSQADTSFTRRFGGTGLGLTIASQLVQLMGGRLELDSCV 606 Query: 799 AKGTLIE--IIFPLYDTSHPH 817 +G++ I F L PH Sbjct: 607 GRGSVFHFTIAFALAQGETPH 627 >gi|261416771|ref|YP_003250454.1| integral membrane sensor hybrid histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373227|gb|ACX75972.1| integral membrane sensor hybrid histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 1398 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 86/263 (32%), Positives = 142/263 (53%), Gaps = 19/263 (7%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE- 625 ++ L A ++A+ S K+ FL +SH+IRTP+ AIIG++E+ +GN + Sbjct: 872 QQAALEQALEMAKSASRAKTMFLNNMSHDIRTPMNAIIGYTELATIH----IGNKEQVRN 927 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + I+ S N +L ++ND+LD+S+IESGK+NL+ + L E + +VQ N K + Sbjct: 928 FLGKIELSSNHLLSLINDVLDMSRIESGKLNLNEKLEHLPEIIHTLKDIVQADINAKNLQ 987 Query: 686 IRTSFANNI----PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----- 736 FAN++ ++ D + Q+ LN++SNAI +TP+GG I S ++E Sbjct: 988 F---FANSVGIRNEDVVCDRLRLNQVLLNVISNAIKYTPAGGSIWFSVEQKESDEDGYGV 1044 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG-EGTGLGLPLAKAMVDANMGKFYIF 795 R++D+G+GM+ L K F ++ NS + G +GTGLG+ + K +VD G I Sbjct: 1045 YEFRIKDSGIGMSEDFLPKIYDAFTRV-NSSTVSGIQGTGLGMAITKNIVDMMDGSIDIK 1103 Query: 796 STPAKGTLIEIIFPLYDTSHPHD 818 S +GT + + F H+ Sbjct: 1104 SKVDEGTDVVLNFKFALAGAEHE 1126 >gi|42524880|ref|NP_970260.1| signal transduction histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39577090|emb|CAE78319.1| signal transduction histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 838 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 107/392 (27%), Positives = 181/392 (46%), Gaps = 43/392 (10%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR- 494 E +TR ++ + + L +IL + S+ + ++++ G N A ++ G +++I Sbjct: 197 EQHETRKAVEALQGKSILLDTILNSMSEALIVVDQNGWFTHYNAAAQRIIGSKIKEISTD 256 Query: 495 --------------KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 +PFT + P L LS D LE S E Sbjct: 257 SSVEQLGFFNQAEGRPFT---RKELP------LYRALSGDRVDDLEIFVQNSEHPE---G 304 Query: 541 LRIIIKKLPFS------SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 + I + P + S + DIS K + + A++ A + S KSDFLA +SH Sbjct: 305 IYISLSSRPLNDIDGGISGALIVFKDISRRKMVEQEWIRAREAALEASQKKSDFLAAMSH 364 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 EIRTP+ +IG + ++ + NP +Y I RS +L ++NDLLD SKIE+GK Sbjct: 365 EIRTPMNGVIGMTTLLADTHL----NPEQTDYVGNIKRSAESLLMLINDLLDHSKIEAGK 420 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILS 713 + L +P+ L V + + + + EK I + F N+ AD ++QI +N++ Sbjct: 421 IRLDPQPLDLQFLVEDVLEMFKPTVAEKNIGLECRFDGKNLWHYRADAGRLRQILVNLMG 480 Query: 714 NAIHFTPSG-GQIIISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 NA+ FT G ++ +S+ + + ++ V+DTG G+ +E + + Q + Sbjct: 481 NAVKFTEKGFVRLEVSSRGDKDGKTALLFEVKDTGQGLQEHEKRSLFQKYFQAKAGMKF- 539 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GTGLGL + K +VD G + S P G+ Sbjct: 540 -GGTGLGLSICKQLVDLMGGDIGVESVPGVGS 570 >gi|145599745|ref|YP_001163821.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pestis Pestoides F] gi|145211441|gb|ABP40848.1| two component sensor kinase/response regulator protein RcsC [Yersinia pestis Pestoides F] Length = 926 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 133/256 (51%), Gaps = 7/256 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 421 VLVDVSARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 479 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 480 PQGVDRLVTAMN---NSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYL 536 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +KR+ + ++PR++ D ++Q+ N+L+NAI FT +G II + Sbjct: 537 PLVVKKRLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG--CIILQVRVRDC 594 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + RVRDTGVG+ + E+ + PF Q+ Q +GTGLGL + + +V+ G + Sbjct: 595 YLEFRVRDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVI 654 Query: 796 STPAKGTLIEIIFPLY 811 S G++ I PLY Sbjct: 655 SELGMGSIFAIRIPLY 670 >gi|330802407|ref|XP_003289209.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum] gi|325080737|gb|EGC34280.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum] Length = 2059 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 89/279 (31%), Positives = 145/279 (51%), Gaps = 22/279 (7%) Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 ++L L++ I ++ +H++ E KN L AK+ AE S KSDF+A +SHEI Sbjct: 1320 EMLQLKVTINEM---------IHNLKE-TTIKNTL--AKETAEAASRAKSDFMANMSHEI 1367 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTP+ IIG +++ + EY + S +L I+ND+LD SKIE+G++ Sbjct: 1368 RTPMNGIIGMTDLTLDTEL----TAEQREYLTMVQSSAGSLLTIINDILDFSKIEAGRLE 1423 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNA 715 L SL + + + + A++K + + A++IP ++ D ++QI N++ NA Sbjct: 1424 LDQSDFSLRAHLYDTLKTLAWRAHQKGLELVCDIASDIPDSLVGDPGRLRQIVTNLVGNA 1483 Query: 716 IHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 I FT G +++ + EV+LR V D+G+G+ +L + F Q S R Sbjct: 1484 IKFTSEGEVDLVVKIDKYIDGEVLLRFSVIDSGIGIPKEKLHLIFEAFSQADGSITRRYG 1543 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII--FP 809 GTGLGL ++ +V+ GK + S P KG+ E FP Sbjct: 1544 GTGLGLTISTRLVELMKGKLRVVSKPGKGSTFEFTAQFP 1582 >gi|317050262|ref|YP_004111378.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum indicum S5] gi|316945346|gb|ADU64822.1| ATP-binding region ATPase domain protein [Desulfurispirillum indicum S5] Length = 777 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 124/223 (55%), Gaps = 5/223 (2%) Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY-ANYIDRSGNLVLDIVNDLLD 646 FLA +SHE+RTPL AIIG+SE+ Q GN + ++ I+++G +L IVND+LD Sbjct: 285 FLANMSHELRTPLNAIIGYSEM--TQEDIAAGNTQSVQQDLEKINKAGLHLLSIVNDILD 342 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706 ISKIE+GKM+L E + + + + ++++ ++ + + +I + AD V+Q Sbjct: 343 ISKIEAGKMDLFLEDFDITQLLHDVVAIMTPLMEKQGNQFQLVLSPDIGMMHADQTKVRQ 402 Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 I +N+LSNA FT G + H E +++ V DTG+GM ++++ K F Q S Sbjct: 403 ILINLLSNATKFTHQGEITVEVQNH--GEHIVVSVHDTGIGMDPEQVDRLFKAFTQADAS 460 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + GTGLGL +++ G + STP KG+ + P Sbjct: 461 TTRKYGGTGLGLSISQHFCHMMGGSIRVESTPGKGSHFTVQLP 503 >gi|258406487|ref|YP_003199229.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] gi|257798714|gb|ACV69651.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] Length = 1316 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 84/239 (35%), Positives = 124/239 (51%), Gaps = 14/239 (5%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK AE + KS FLA +SHEIRTP+ AI+G +IK + ANY+ Sbjct: 693 LEEAKDAAEVANRTKSAFLANMSHEIRTPMNAILGMLHLIKQTHLS-------AKQANYM 745 Query: 631 DR---SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 D+ S +L+I+ND+LD SKIESGK+ L ++ + L+ L A +K I++ Sbjct: 746 DKVHTSTEALLNIINDILDFSKIESGKLQLEQTEFDIETEMRTVAELLGLEAQQKGIVLN 805 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH--TSNEEVILRVRD 743 N P R + D ++Q+ +N++ NAI FT G Q+ T + E I V D Sbjct: 806 FDLDLNAPERFVGDAMRLRQVLINLVGNAIKFTEHGHIQVTQRLTQWVEAQAECIFEVED 865 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TG G+ + E + F Q S GTGLGL ++K +V+ G+ + STP +G+ Sbjct: 866 TGPGIAPGQQELLFQAFSQADASTTREFGGTGLGLAISKRLVEMMGGEIGLQSTPGQGS 924 >gi|170025068|ref|YP_001721573.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pseudotuberculosis YPIII] gi|169751602|gb|ACA69120.1| integral membrane sensor hybrid histidine kinase [Yersinia pseudotuberculosis YPIII] Length = 957 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 83/253 (32%), Positives = 132/253 (52%), Gaps = 7/253 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 455 DVSARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PQG 513 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 514 VDRLVTAMN---NSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLV 570 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +KR+ + ++PR++ D ++Q+ N+L+NAI FT +G II + + Sbjct: 571 VKKRLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG--CIILQVRVRDCYLE 628 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 RVRDTGVG+ + E+ + PF Q+ Q +GTGLGL + + +V+ G + S Sbjct: 629 FRVRDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISEL 688 Query: 799 AKGTLIEIIFPLY 811 G++ I PLY Sbjct: 689 GMGSIFAIRIPLY 701 >gi|87118375|ref|ZP_01074274.1| serine/threonine kinase with two-component sensor domain [Marinomonas sp. MED121] gi|86166009|gb|EAQ67275.1| serine/threonine kinase with two-component sensor domain [Marinomonas sp. MED121] Length = 2128 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 86/278 (30%), Positives = 151/278 (54%), Gaps = 11/278 (3%) Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK-LSHAKKIAEKESSHKSDFL 589 G+ +++L L I+ + S +L ++ + E+ K L+ AK AE+ + KS FL Sbjct: 1464 GAFTKDRLDVLNILAGQAAISIDNALVYQNLEDRVNERTKQLTLAKLQAEEANQAKSMFL 1523 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 A +SHEIRTP+ A+IG S ++ + N +Y N I S ++L ++N +LD SK Sbjct: 1524 ATMSHEIRTPMNAVIGLSHLVLKTQL----NLEQKDYLNKILESAEILLGLINSVLDFSK 1579 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIA 708 IE+ K+ L P +L++ + + S+ + A EK + + N +IP + D ++QI Sbjct: 1580 IEAHKLALESIPFNLNDVIENSTSICSIKAKEKGLALNIHCHNADIPLLQGDPLRLQQIL 1639 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR----DTGVGMTNYELEKAMKPFGQIP 764 +N+ +NA+ FT GQ+ I NE+ + +++ DTGVGM +++ F Q Sbjct: 1640 INLANNAVKFTRI-GQVDIHIHLEPNEQDLAQLKFEIVDTGVGMNKKQIDNLFSSFSQGD 1698 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +S + GTGLGL ++K +++ G+ ++ S KG+ Sbjct: 1699 DSITRQYGGTGLGLAISKELIELMGGEIWVNSEMGKGS 1736 >gi|320015940|gb|ADV99511.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 949 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 133/256 (51%), Gaps = 7/256 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 444 VLVDVSARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 502 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 503 PQGVDRLVTAMN---NSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYL 559 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +KR+ + ++PR++ D ++Q+ N+L+NAI FT +G II + Sbjct: 560 PLVVKKRLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG--CIILQVRVRDC 617 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + RVRDTGVG+ + E+ + PF Q+ Q +GTGLGL + + +V+ G + Sbjct: 618 YLEFRVRDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVI 677 Query: 796 STPAKGTLIEIIFPLY 811 S G++ I PLY Sbjct: 678 SELGMGSIFAIRIPLY 693 >gi|296133450|ref|YP_003640697.1| signal transduction histidine kinase, nitrogen specific, NtrB [Thermincola sp. JR] gi|296032028|gb|ADG82796.1| signal transduction histidine kinase, nitrogen specific, NtrB [Thermincola potens JR] Length = 354 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 100/365 (27%), Positives = 183/365 (50%), Gaps = 41/365 (11%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTE 515 +E +S GI IN + ++ N A +FG ++L +PF+V + NT S++ L+ Sbjct: 18 IECSSTGIVAINNDEDLVIFNEAAENIFGVSAREVLYRPFSVLQNMTGNTDSLL---LST 74 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP---FSSCYSLTMHDISEWKQEKNKLS 572 + S + + +E + ++ +++ +++ +C L++ DI+ KQ + ++ Sbjct: 75 LHSGSVYEHVEAVIESASGPINVMAYTDLVRNSEGQVIGAC--LSLRDITPQKQLEEQMY 132 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR--YIEYANY- 629 +K S + A ++HE+R PLT++ GF ++ Q GP +P+ Y+E Sbjct: 133 QTEKF-----SAIGELAAGIAHEVRNPLTSVQGFLQLFA-QNTGP-EDPKKAYLEIMQKE 185 Query: 630 IDRSGNLV---LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 IDR+ +V L + +L I K ++D+ + E + L+Q+ A + I Sbjct: 186 IDRANAIVKQFLLLAKPVLPIKK-----------GTAMDKLIEEVVCLLQVEAGRYGVEI 234 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTG 745 +T++A +P + D +KQ+ LNI N I+ P+GG + I T + + + +V + + DTG Sbjct: 235 QTNYAKGLPLVAIDREQIKQVLLNICKNGIYAMPNGGLLSIETEYEAVQNKVHVIISDTG 294 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 G+ + LEK PF R +GTGLGL ++ +V + GK + S KGT Sbjct: 295 QGIDPFTLEKIFDPF------FTTRADGTGLGLTVSYKIVQNHEGKIEVRSEVGKGTTFR 348 Query: 806 IIFPL 810 +I PL Sbjct: 349 VILPL 353 >gi|332702075|ref|ZP_08422163.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552224|gb|EGJ49268.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 675 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 134/246 (54%), Gaps = 11/246 (4%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E Q++ +L+ AK+ AE+ S KS+FLA +SHEIRTP+ ++G S + + + Sbjct: 262 ELAQQREELTLAKEEAERASRAKSEFLANMSHEIRTPMNGVLGMSRLALDMS----SEAQ 317 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 E + +SG ++DI+ND+LD+SKIE+GK++ L + + +Q+ A ++ Sbjct: 318 VRECLELVRQSGENLMDIINDILDLSKIEAGKIDFQHTNFDLGQTLEATFKPLQIMAAQR 377 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----- 736 + + +P ++L D ++Q+ N++ NAI FT GG I + +E Sbjct: 378 GLAFESDLDPAVPVQLLGDPGRLRQVLTNLIGNAIKFTRKGG-IKVKVALQGQQETESAC 436 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 ++ VRD+GVG+ +L++ + F Q+ ++ + GTGLGL ++K +V G + S Sbjct: 437 LLFEVRDSGVGIPADKLDRIFESFSQVRHAPDLEQGGTGLGLAISKELVRMMGGGIQVES 496 Query: 797 TPAKGT 802 KG+ Sbjct: 497 EVGKGS 502 >gi|294506227|ref|YP_003570285.1| two-component system sensor protein [Salinibacter ruber M8] gi|294342555|emb|CBH23333.1| two-component system sensor protein [Salinibacter ruber M8] Length = 1111 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 12/270 (4%) Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 S Y+ + D E++ E L AK+ AE+ + KS FLA +SHEIRTPLT+IIGF+EVI Sbjct: 842 STYAALVLDRIEYEGE---LVSAKEEAERLNRMKSAFLANMSHEIRTPLTSIIGFAEVIG 898 Query: 612 NQRFGPLGN----PRYI----EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 ++ L + P + ++A+ I+ SG+ +L+ ++ +L++S++E+G+M L P+ Sbjct: 899 DEATSLLEHSDSPPDAVTALDQFADLIEESGHRLLETLDTVLNLSRLEAGEMELDCSPLD 958 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 L + V+EA L + A + I ++ A D ++ N++SNA+ +T GG Sbjct: 959 LADEVAEATDLFEPQALTEGIDLQGETAEGPLWARVDEGGLRIALQNLISNALKYTEEGG 1018 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + + ++V L V DTGVGM + + +PF Q EGTGLGL + K Sbjct: 1019 TVRVRAGR-RGDDVALEVEDTGVGMDPDHVPELFEPFRQESEGTGRTYEGTGLGLAVTKQ 1077 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 ++ G + + G+ + P D Sbjct: 1078 AIEQMGGTIAVETAKGDGSCFTVRVPAADA 1107 >gi|153948861|ref|YP_001401729.1| RcsB family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|152960356|gb|ABS47817.1| sensor kinase protein RcsC [Yersinia pseudotuberculosis IP 31758] Length = 949 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 133/256 (51%), Gaps = 7/256 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 444 VLVDVSARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 502 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 503 PQGVDRLVTAMN---NSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYL 559 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +KR+ + ++PR++ D ++Q+ N+L+NAI FT +G II + Sbjct: 560 PLVVKKRLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG--CIILQVRVRDC 617 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + RVRDTGVG+ + E+ + PF Q+ Q +GTGLGL + + +V+ G + Sbjct: 618 YLEFRVRDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVI 677 Query: 796 STPAKGTLIEIIFPLY 811 S G++ I PLY Sbjct: 678 SELGMGSIFAIRIPLY 693 >gi|45440759|ref|NP_992298.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pestis biovar Microtus str. 91001] gi|51595601|ref|YP_069792.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pseudotuberculosis IP 32953] gi|45435617|gb|AAS61175.1| two component sensor kinase/response regulator protein RcsC [Yersinia pestis biovar Microtus str. 91001] gi|51588883|emb|CAH20497.1| two component sensor kinase/response regulator protein RcsC [Yersinia pseudotuberculosis IP 32953] Length = 957 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 133/256 (51%), Gaps = 7/256 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 452 VLVDVSARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 510 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 511 PQGVDRLVTAMN---NSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYL 567 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +KR+ + ++PR++ D ++Q+ N+L+NAI FT +G II + Sbjct: 568 PLVVKKRLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG--CIILQVRVRDC 625 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + RVRDTGVG+ + E+ + PF Q+ Q +GTGLGL + + +V+ G + Sbjct: 626 YLEFRVRDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVI 685 Query: 796 STPAKGTLIEIIFPLY 811 S G++ I PLY Sbjct: 686 SELGMGSIFAIRIPLY 701 >gi|162418760|ref|YP_001605841.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pestis Angola] gi|162351575|gb|ABX85523.1| sensor kinase protein RcsC [Yersinia pestis Angola] Length = 949 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 133/256 (51%), Gaps = 7/256 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 444 VLVDVSARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 502 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 503 PQGVDRLVTAMN---NSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYL 559 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +KR+ + ++PR++ D ++Q+ N+L+NAI FT +G II + Sbjct: 560 PLVVKKRLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG--CIILQVRVRDC 617 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + RVRDTGVG+ + E+ + PF Q+ Q +GTGLGL + + +V+ G + Sbjct: 618 YLEFRVRDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVI 677 Query: 796 STPAKGTLIEIIFPLY 811 S G++ I PLY Sbjct: 678 SELGMGSIFAIRIPLY 693 >gi|295107410|emb|CBL04953.1| Signal transduction histidine kinase [Gordonibacter pamelaeae 7-10-1-b] Length = 727 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 131/249 (52%), Gaps = 9/249 (3%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 K L A +A+ S+ KS FL+ +SH+IRTP+ AI+G + + K P R Sbjct: 199 KADLREALSLAQIASAAKSQFLSNMSHDIRTPMNAIVGLTTIAKAHLHEP---ERMAACL 255 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + I S +L ++ND+LD+ KIESGK+ L+ + S + V+ I++ Q A K + + Sbjct: 256 DRIQSSSRHLLSLINDVLDMGKIESGKIVLNEDRFSFPDFVNGVIAIAQPQAKAKNLSLD 315 Query: 688 TSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EVILRV 741 + ++ D + Q +N++SNA+ +TP GG I +S + + + V Sbjct: 316 ITLGTIQQENVVGDAMRLNQALINLVSNAVKYTPDGGSIRLSLSERPSHRPGCHDYRFVV 375 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +DTG+GM+ LE+ PF + + R EGTGLG+ + K +VD G + STP +G Sbjct: 376 QDTGLGMSPEFLERLFDPFEREESDATKRIEGTGLGMAITKNVVDMMGGSIEVESTPGEG 435 Query: 802 TLIEIIFPL 810 + + PL Sbjct: 436 STFIMTVPL 444 >gi|270262775|ref|ZP_06191046.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043459|gb|EFA16552.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 956 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 87/258 (33%), Positives = 136/258 (52%), Gaps = 7/258 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 447 DVSARVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKAL-PQG 505 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N ++ S L+L I++D+LD SKIES ++ + S E ++ Sbjct: 506 VDRLV---NAMNNSSGLLLKIISDILDFSKIESEQLKIEPREFSCLEVITHIAGNYLPLV 562 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +KR+ + N+P RI D ++Q+ N+L+NAI FT +G I+ T +S E Sbjct: 563 VKKRLGLYCFIEQNVPERISGDPVRLQQVLSNLLNNAIKFTDTGCIILQVCTRSSYLE-- 620 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 VRDTGVG+ E+ + PF Q+ + Q +GTGLGL + + +++ G + S P Sbjct: 621 FSVRDTGVGIPEKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLINMMDGDIAVESEP 680 Query: 799 AKGTLIEIIFPLYDTSHP 816 G+L I PL++ P Sbjct: 681 GLGSLFTIRIPLFNAQFP 698 >gi|121998928|ref|YP_001003715.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1] gi|121590333|gb|ABM62913.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1] Length = 680 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 105/382 (27%), Positives = 180/382 (47%), Gaps = 23/382 (6%) Query: 444 KRKMEIEVMQLCSILEA-TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL- 501 +R++E +L +I +A TS + + EGII T+ LFGY +++ +P + Sbjct: 170 RRQLEHRQRELEAIFQAATSVSLIKTDLEGIIQETSTGTEALFGYARHELIGRPVALVHR 229 Query: 502 --EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559 + P + L + R+ + GST I + S+T Sbjct: 230 PEDHTQPGTIIERLRNDRTPVRREMPLMRSDGSTFPALFSVHPITDAHDELIATLSVTF- 288 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS+ K+ + +L A + KSDFL VSH++RTPL A++GFS+++ P Sbjct: 289 DISDQKRVEQELEQAVRA-------KSDFLNAVSHDLRTPLNALMGFSQLLAETDLTPEE 341 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 RY E+ R G + +++ LL++S+++SG M H EP++L + E +L + A Sbjct: 342 RQRYAEHCR---RGGERLHGLIDSLLELSRLQSGGMRAHTEPLALPALIEEQCALFRPAA 398 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K I + + ++PR I D ++Q N++ NAI +T +G I T E++ Sbjct: 399 ERKGIELACQISADLPRWIQGDRTRLEQALSNLIDNAIKYTEAGHVRI--TASAEGEQIT 456 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 L V DTG G+ ++ F + + Q +G GLGL +A+ + G ++ S Sbjct: 457 LAVEDTGPGIPAENRDRIFAAFDR--GNYQGEQQGHGLGLAIAREIAQLMGGNLHLDSEQ 514 Query: 799 AKG---TLIEIIFPLYDTSHPH 817 +G TL + L + + PH Sbjct: 515 GRGTTFTLTARLQTLCEETTPH 536 >gi|331673737|ref|ZP_08374500.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA280] gi|331069010|gb|EGI40402.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA280] Length = 949 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 83/259 (32%), Positives = 133/259 (51%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ T + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRTDGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|239907599|ref|YP_002954340.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797465|dbj|BAH76454.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1511 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 85/250 (34%), Positives = 135/250 (54%), Gaps = 8/250 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DISE K + L+ AK+ A + + KSDFLA +SHEIRTP+ AI+G S + Sbjct: 753 TFVDISEQKAVERALAAAKEAAVEATLLKSDFLANMSHEIRTPMNAIVGLSHLALTTEL- 811 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PR +Y I ++ +L I+ND+LD SKIE+GK+++ L + +L++ Sbjct: 812 ---TPRQRDYMGKIQQASQHLLGIINDILDFSKIEAGKLSIERTDFDLSAVLENVAALIR 868 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 A K + + A ++P+ ++ D + QI +N +NA+ FT +G I + Sbjct: 869 EKAEAKGLELLFDVAADVPQDLVGDPLRLGQILVNYANNAVKFTEAGEVGIRVRLIAEDG 928 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 E +LR VRDTG+G+T ++ + + F Q S R GTGLGL ++K + + G+ Sbjct: 929 GEAVLRFEVRDTGIGLTQEQIARLFQSFSQADASTTRRFGGTGLGLAISKRLAELMRGEV 988 Query: 793 YIFSTPAKGT 802 + STP G+ Sbjct: 989 GVDSTPGAGS 998 >gi|109900048|ref|YP_663303.1| aerobic respiration control sensor protein ArcB [Pseudoalteromonas atlantica T6c] gi|109702329|gb|ABG42249.1| PAS/PAC sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] Length = 781 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 107/374 (28%), Positives = 172/374 (45%), Gaps = 27/374 (7%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHY 512 L SI++A+ D I N EG NR ++ G E I P V+ E+ V Sbjct: 160 LRSIIDASPDLIYYRNEEGQFAGCNRVAEQMTGLTEAELIGLTPHEVWEEELARQVAASD 219 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM------HDISEWKQ 566 E+L D+ T E + +R K+PF + + DI+E KQ Sbjct: 220 -QEVLENDVSITEEIWLRFADGRRGYFEMR----KVPFYDKDNKRLGLLAFGRDITERKQ 274 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 +N I K S K+ F+A +SHE+RTPL I+G S ++++ + + + Sbjct: 275 AEN-------IVAKASKDKTKFIATISHELRTPLNGIVGLSRMLRDTKL----DKEQFAW 323 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + I SG + +I ND++DI ++ K+ L + VS+ + E S+++L A +K + Sbjct: 324 VSTIYASGITLGNIFNDIIDIDRMGRDKLELSLKTVSIKDFTEELSSIIKLLAADKGLAF 383 Query: 687 RTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVR 742 T +P + D ++QI N+L NA+ FT G + TS + V RV Sbjct: 384 DTEIREPLPDFVEVDGTRLRQILWNLLFNAVKFTQKGKVSLSVEAQTSGDGISHVTFRVG 443 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTGVG+ EL+K + Q+ + GTG+GL + + MV G+ + S KGT Sbjct: 444 DTGVGIPQTELDKIFAMYYQVNLPEHQSATGTGIGLAICQQMVSLMNGEIKVSSEIGKGT 503 Query: 803 LIEIIFPLYDTSHP 816 + PL ++ P Sbjct: 504 CFSVELPLPISNRP 517 >gi|254444308|ref|ZP_05057784.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198258616|gb|EDY82924.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 612 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 80/243 (32%), Positives = 124/243 (51%), Gaps = 10/243 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K FLA +SHEIRT L IIG S ++ + P + E+A I +SG+ ++ I+ND+ Sbjct: 221 KGRFLATMSHEIRTTLNGIIGASHMLNHSSSLPESDK---EFAGIIQKSGDALMIIINDI 277 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703 LD SK ESG++ L P SL + E +L+ I + F +P+ ++ D Sbjct: 278 LDYSKYESGQLELEQTPFSLKDLAKECTNLMDTSLANHNITLEVEFDPKLPQLVVGDPAR 337 Query: 704 VKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPF 760 ++Q+ LN+L+NA F G + I N+ V+LR +RD G+GMT LE+ F Sbjct: 338 IRQVVLNLLNNAFKFGRDGTVTLAIKAESVKNDSVVLRIEIRDQGIGMTPDTLERLFSAF 397 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY---DTSHPH 817 Q +S GTGLGL + K + DA + + S +G++ I L + + P Sbjct: 398 MQADSSTTREYGGTGLGLAICKLLADAMAARIDVSSELGEGSVFAFILELALPEEDAKPA 457 Query: 818 DCI 820 D + Sbjct: 458 DIV 460 >gi|146305870|ref|YP_001186335.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] gi|145574071|gb|ABP83603.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] Length = 1165 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 82/257 (31%), Positives = 137/257 (53%), Gaps = 8/257 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ K+ ++ ++ AK +AE+ + K+DFLA +SHEIRTP+ AIIG S + Sbjct: 417 TGRDITVRKEVEDAMARAKALAEQAAQAKADFLANMSHEIRTPMNAIIGMSHLALKTDL- 475 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 +PR +Y N I ++G +L ++ND+LD SKIE+GK+ + L++ + +L+ Sbjct: 476 ---DPRQRDYLNKIQQAGQHLLGVINDILDFSKIEAGKVRVECIEFDLEQVLDNLANLIG 532 Query: 677 LYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 A K + + +P + L D + QI +N +NA+ FT G ++ I Sbjct: 533 DKAAGKGLELLFRRDAQVPCVLLGDPLRLGQILINYANNAVKFTEHGEVEVSIELEKRDG 592 Query: 735 EEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++V L VRDTG+G++ + + + F Q +S R GTGLGL + K + +A G+ Sbjct: 593 KQVWLLFSVRDTGIGLSPAQQARLFESFQQADSSTTRRYGGTGLGLAICKRLAEAMGGEV 652 Query: 793 YIFSTPAKGTLIEIIFP 809 + S +G+ P Sbjct: 653 GVDSELGRGSRFWCRLP 669 >gi|229894116|ref|ZP_04509302.1| two component sensor kinase/response regulator protein RcsC [Yersinia pestis Pestoides A] gi|229704001|gb|EEO91014.1| two component sensor kinase/response regulator protein RcsC [Yersinia pestis Pestoides A] Length = 704 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 133/256 (51%), Gaps = 7/256 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 199 VLVDVSARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 257 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 258 PQGVDRLVTAMN---NSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYL 314 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +KR+ + ++PR++ D ++Q+ N+L+NAI FT +G II + Sbjct: 315 PLVVKKRLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG--CIILQVRVRDC 372 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + RVRDTGVG+ + E+ + PF Q+ Q +GTGLGL + + +V+ G + Sbjct: 373 YLEFRVRDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVI 432 Query: 796 STPAKGTLIEIIFPLY 811 S G++ I PLY Sbjct: 433 SELGMGSIFAIRIPLY 448 >gi|22126848|ref|NP_670271.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pestis KIM 10] gi|108806928|ref|YP_650844.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pestis Antiqua] gi|108812920|ref|YP_648687.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pestis Nepal516] gi|149366792|ref|ZP_01888826.1| two component sensor kinase/response regulator protein RcsC [Yersinia pestis CA88-4125] gi|218928376|ref|YP_002346251.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pestis CO92] gi|270487159|ref|ZP_06204233.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Yersinia pestis KIM D27] gi|21959879|gb|AAM86522.1|AE013898_5 sensor for ctr capsule biosynthesis [Yersinia pestis KIM 10] gi|108776568|gb|ABG19087.1| two component sensor kinase/response regulator protein RcsC [Yersinia pestis Nepal516] gi|108778841|gb|ABG12899.1| two component sensor kinase/response regulator protein RcsC [Yersinia pestis Antiqua] gi|115346987|emb|CAL19878.1| two component sensor kinase/response regulator protein RcsC [Yersinia pestis CO92] gi|149291166|gb|EDM41241.1| two component sensor kinase/response regulator protein RcsC [Yersinia pestis CA88-4125] gi|270335663|gb|EFA46440.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Yersinia pestis KIM D27] Length = 957 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 133/256 (51%), Gaps = 7/256 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 452 VLVDVSARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 510 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 511 PQGVDRLVTAMN---NSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYL 567 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +KR+ + ++PR++ D ++Q+ N+L+NAI FT +G II + Sbjct: 568 PLVVKKRLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG--CIILQVRVRDC 625 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + RVRDTGVG+ + E+ + PF Q+ Q +GTGLGL + + +V+ G + Sbjct: 626 YLEFRVRDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVI 685 Query: 796 STPAKGTLIEIIFPLY 811 S G++ I PLY Sbjct: 686 SELGMGSIFAIRIPLY 701 >gi|149375696|ref|ZP_01893465.1| two-component sensor histidine kinase protein, putative [Marinobacter algicola DG893] gi|149360098|gb|EDM48553.1| two-component sensor histidine kinase protein, putative [Marinobacter algicola DG893] Length = 1126 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 80/253 (31%), Positives = 140/253 (55%), Gaps = 9/253 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L +I ++ L AK+ AE + KS +L +SHE+R+PL AI+G++++++N Sbjct: 644 LLTEEIVAHERTDQALQQAKEHAEAANGAKSRYLTGISHELRSPLNAILGYAQLMENDTA 703 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P N + + I RSG + D++ LLDISKIE+G+++LH + V +D + + + + Sbjct: 704 IP-DNRK--DALGVIRRSGEYLADLIEGLLDISKIEAGRLDLHRDEVRIDLLMEQLVHMF 760 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 +L A EK + +P ++ D + ++QI +N+LSNA+ +T +G IS T Sbjct: 761 RLQAEEKGLAFSYHGPTRLPELVTTDEKRLRQILINLLSNALKYTDNGS---ISLTLKYR 817 Query: 735 EEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +V ++DTG G+ +E+ +PF +I Q R GTGLGL + + + + G Sbjct: 818 SQVAEFTIKDTGEGIAEENIERIFRPFERIRTPGQSR-TGTGLGLTITRLLTEIMGGDLS 876 Query: 794 IFSTPAKGTLIEI 806 + STP +G+ + Sbjct: 877 VESTPGEGSTFRV 889 >gi|319411626|emb|CBQ73670.1| related to histidine kinase (C-terminal fragment) [Sporisorium reilianum] Length = 1516 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 82/251 (32%), Positives = 134/251 (53%), Gaps = 14/251 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H + E E+++ A+ A++ S KS+FLA +SHEIRTP+ +IG SE++ + PL Sbjct: 837 HKLEESMHERSRALAAETAAKEASRIKSEFLANMSHEIRTPIAGVIGLSELLCDT---PL 893 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + ++A I RS + +L ++ND+LD K+E GKM+L +L+ + + ++ Sbjct: 894 SKEQR-DFAENIQRSADALLTVINDILDFEKLELGKMDLEKTAFNLNVVIMDTQKMLTFA 952 Query: 679 ANEKRILIRT----SFANNIPRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTH 731 +K + R SF +I+ D ++Q+ N+L+NAI F +G ++I + Sbjct: 953 TQKKGLEFRNECQLSFTG---QIVGDAGRLRQVLTNLLTNAIKFAAAGAITLRVIETYED 1009 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + V VRDTG G++ L+K +PF Q S R GTGLGL + K +VD G Sbjct: 1010 QKSLHVHFEVRDTGCGISQTTLKKLFQPFSQADPSFARRFGGTGLGLSICKNLVDLMGGT 1069 Query: 792 FYIFSTPAKGT 802 + S KG+ Sbjct: 1070 IGLESVENKGS 1080 >gi|227819691|ref|YP_002823662.1| sensor-regulator protein [Sinorhizobium fredii NGR234] gi|227338690|gb|ACP22909.1| putative sensor-regulator protein [Sinorhizobium fredii NGR234] Length = 989 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 134/246 (54%), Gaps = 10/246 (4%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + ++ + +L A+ AE+ S KS+FLA +SHEIRTP+ +IG +E+++ + + Sbjct: 324 QLRKSREELERARDAAEQASIAKSEFLANMSHEIRTPMNGVIGIAELLEGTEL----SEQ 379 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y + I S + ++D++ND+LD SKIE+G++ L P L + + + + + A +K Sbjct: 380 QRRYVSIILHSADTLMDLINDILDFSKIEAGRLELETIPFVLRDTLGDTLQTLAKRAADK 439 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----V 737 + + +P ++ D ++QI +N++ NAI FT + G++++ T + + Sbjct: 440 GLELACHIPPEVPDHLMGDPTRLRQIIVNLVGNAIKFTEN-GEVVVDVTLVGQGDHGAHL 498 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 VRDTG+G+ + E+ + F Q S + GTGLGL +A + + G+ + S Sbjct: 499 QFEVRDTGIGIPEAQQERIFEAFAQADASTTRQYGGTGLGLAIAAQLAEKMGGRMQLDSK 558 Query: 798 PAKGTL 803 P G++ Sbjct: 559 PGVGSV 564 >gi|186894665|ref|YP_001871777.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pseudotuberculosis PB1/+] gi|186697691|gb|ACC88320.1| integral membrane sensor hybrid histidine kinase [Yersinia pseudotuberculosis PB1/+] Length = 957 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 133/256 (51%), Gaps = 7/256 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 452 VLVDVSARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 510 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 511 PQGVDRLVTAMN---NSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYL 567 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +KR+ + ++PR++ D ++Q+ N+L+NAI FT +G II + Sbjct: 568 PLVVKKRLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG--CIILQVRVRDC 625 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + RVRDTGVG+ + E+ + PF Q+ Q +GTGLGL + + +V+ G + Sbjct: 626 YLEFRVRDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVI 685 Query: 796 STPAKGTLIEIIFPLY 811 S G++ I PLY Sbjct: 686 SELGMGSIFAIRIPLY 701 >gi|149174016|ref|ZP_01852644.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] gi|148846996|gb|EDL61331.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] Length = 540 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 80/231 (34%), Positives = 132/231 (57%), Gaps = 8/231 (3%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNL 636 AE + KS FLA +SHEIRTP+TAI+G++++++ + L P I + + I R+G Sbjct: 140 AEAANQSKSAFLANMSHEIRTPMTAILGYTDILELEA-KSLQLPELISDSLDTIKRNGGH 198 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP- 695 +++++ND+LD+SKIE+GK+++ S V E + LVQ+ A K + + S+ +P Sbjct: 199 LMELINDILDLSKIEAGKLDVESICCSPQTIVEEVLELVQVRAEAKGLKLEASYQFPLPA 258 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDTGVGMTNY 751 I +D ++QI +N++ NAI FT G I ++T+ N +V V D G+GMT Sbjct: 259 EIHSDPTRIRQILINLIGNAIKFTEV-GTIRLNTSFLENPGEEPQVQFTVIDQGIGMTEA 317 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 ++ +PF Q +S + GTGLGL + K + D G + S +G+ Sbjct: 318 QMSNLFRPFSQADSSTTRKYGGTGLGLTICKRLTDVLGGDISVTSKLNQGS 368 >gi|154483340|ref|ZP_02025788.1| hypothetical protein EUBVEN_01043 [Eubacterium ventriosum ATCC 27560] gi|149735850|gb|EDM51736.1| hypothetical protein EUBVEN_01043 [Eubacterium ventriosum ATCC 27560] Length = 899 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 84/257 (32%), Positives = 146/257 (56%), Gaps = 20/257 (7%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++EKN +S A++ A K + K++F+++++H+IRTP+ AI+GF E + Q + P+ + Sbjct: 334 RREKNWISIAEE-ANKANLAKTEFISQIAHDIRTPMNAILGF-ETLAEQH---INEPKTV 388 Query: 625 EY-ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV-QLYANEK 682 EY I SG+ ++++VN++LDI++IE+G++ ++ +PV++ + + + ++ QL ++K Sbjct: 389 EYNLKKIKSSGDFLMELVNEVLDITQIENGQLRINSQPVNIPKLLDDFPPMLKQLQGDKK 448 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR-- 740 +I +L D +KQI NILSNAI +TP GG S T EE+ L Sbjct: 449 LNIICNQHDLYQKTLLVDPLRLKQIYTNILSNAIKYTPDGG----SVTFEIYEELFLNNK 504 Query: 741 -------VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + DTG+GM+ + F + +S+ + G GLGL + K +VD G+ Sbjct: 505 YINLIAVISDTGIGMSQEYINHMYSKFSRATDSRINKVGGYGLGLSIVKELVDLMNGRIN 564 Query: 794 IFSTPAKGTLIEIIFPL 810 + S GT +II PL Sbjct: 565 VTSKEGHGTTFKIIIPL 581 >gi|34497668|ref|NP_901883.1| sensor histidine kinase/response regulator [Chromobacterium violaceum ATCC 12472] gi|34103523|gb|AAQ59885.1| probable sensor histidine kinase/response regulator [Chromobacterium violaceum ATCC 12472] Length = 734 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 85/257 (33%), Positives = 137/257 (53%), Gaps = 17/257 (6%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 + L A+ AE S KS FLA +SHEIRTPL ++G ++ + +P + AN Sbjct: 220 DNLEEARSQAEAGSLAKSAFLANMSHEIRTPLNGVLGMLALLAD------SHPSASQ-AN 272 Query: 629 YI---DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 YI + S +L ++ND+LD SK+ESGK+ L +L + + +L+ A K ++ Sbjct: 273 YIRTAEESARHLLLLLNDVLDASKLESGKLELAPVTCNLAYLLRQVTNLMNAQAQAKGLM 332 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VIL 739 + A+ IP+ + D ++QI LN+LSNAI FT GG + + + T+ E+ ++L Sbjct: 333 LNLEMASEIPQWVELDPTRLRQIVLNLLSNAIKFTERGG-VTVHASATAGEQPGTAQLLL 391 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+GM L K K F Q S + G+GLGL +++++ G + S P Sbjct: 392 VVTDTGIGMDQATLSKLFKRFSQGDGSTARQFGGSGLGLEISQSLAQLMGGGISVSSVPG 451 Query: 800 KGTLIEIIFPLYDTSHP 816 +G+ ++ PL + P Sbjct: 452 QGSCFQLTLPLRVIAAP 468 >gi|193066318|ref|ZP_03047368.1| TMAO reductase system sensor TorS [Escherichia coli E22] gi|194428476|ref|ZP_03061016.1| TMAO reductase system sensor TorS [Escherichia coli B171] gi|192926025|gb|EDV80669.1| TMAO reductase system sensor TorS [Escherichia coli E22] gi|194413528|gb|EDX29810.1| TMAO reductase system sensor TorS [Escherichia coli B171] Length = 904 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 86/251 (34%), Positives = 136/251 (54%), Gaps = 19/251 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT GQI++ + T E+ ++ V D+G Sbjct: 535 TAIADDVPSALMGDPRRIRQVITNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHPH 817 PL + P Sbjct: 649 RLPLRVATAPE 659 >gi|146312879|ref|YP_001177953.1| hybrid sensory histidine kinase BarA [Enterobacter sp. 638] gi|145319755|gb|ABP61902.1| Hpt sensor hybrid histidine kinase [Enterobacter sp. 638] Length = 918 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 134/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + NP ++ + Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSEL----NPTQRDHLHT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E ++L+ +++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEIVTLLAHSSHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILRVRDTG 745 N++P ++ D ++Q+ N++ NAI FT +G +++ SN ++ +++RDTG Sbjct: 394 IKNDVPDNVIGDPLRLQQVITNLVGNAIKFTENGNIDVLVEKRAISNNKLQIEVQIRDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + ++ G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLLKEMGGDISFHSQPNRGS 510 >gi|237746159|ref|ZP_04576639.1| two-component system sensor histidine kinase [Oxalobacter formigenes HOxBLS] gi|229377510|gb|EEO27601.1| two-component system sensor histidine kinase [Oxalobacter formigenes HOxBLS] Length = 1090 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 129/249 (51%), Gaps = 8/249 (3%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 ++ L +A A+ + KSDF +R+SH+IRTP+ AIIG S + + + P R E Sbjct: 558 QEQVLRNALASAKAANQAKSDFFSRMSHDIRTPMNAIIGMSAIGQLKMNEP---ERVREC 614 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + ID S +L ++ND+LD+SKIESGKM L +S+ +++ A E R+ Sbjct: 615 FSKIDVSSRYLLSLINDILDMSKIESGKMILTNARFDFSGLISQINTIIYPQALENRLSC 674 Query: 687 RTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRV 741 R + R + D + QI +N+LSNA+ FTP+GG+I + + V R+ Sbjct: 675 RIHHVGVLERFYIGDALRINQILMNLLSNALKFTPAGGKIDLDIGESRRANGFAYVQFRI 734 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+GM+ +++ PF Q G+GLGL + +MV G + S +G Sbjct: 735 SDTGIGMSPEFMKRLYVPFEQETTDIARNKIGSGLGLSIVHSMVQLMGGTIEVQSEKNRG 794 Query: 802 TLIEIIFPL 810 T+ + PL Sbjct: 795 TVFTVTLPL 803 >gi|225571388|ref|ZP_03780384.1| hypothetical protein CLOHYLEM_07486 [Clostridium hylemonae DSM 15053] gi|225159864|gb|EEG72483.1| hypothetical protein CLOHYLEM_07486 [Clostridium hylemonae DSM 15053] Length = 976 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 79/265 (29%), Positives = 142/265 (53%), Gaps = 12/265 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ++ ++ ++ ++ AEKE+ K +FL+R+SHEIRTP+ AI+G S++ Sbjct: 569 MARYRIHAVRMQNSLAKAEKENRAKGEFLSRMSHEIRTPMNAIVGLSDLTCMMD----DV 624 Query: 621 PRYIEY-ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P + + I S +L +++D+LD+S+IE M + EP S+ + ++E S++ A Sbjct: 625 PETVRVNLSKIRSSSRYLLGLISDILDMSRIEQDMMTIVREPFSIGQVMNELESMMTAEA 684 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--SNEEV 737 + + + R++ D +KQ+ +N++SNA FT +GG+I + T T S EE Sbjct: 685 GRRELEFKLDLRIKSDRLIGDAVRLKQVLMNLISNAFKFTSAGGRIRVDVTETEASAEEA 744 Query: 738 I--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + RV D G+G++ + E+ + F Q+ + + +GTGLGL ++K +V+ GK + Sbjct: 745 VFCFRVADNGIGISEKDQERIFESFEQVGTNYS-KSQGTGLGLAISKNIVELMGGKLELK 803 Query: 796 STPAKGT--LIEIIFPLYDTSHPHD 818 S KG+ FP + HD Sbjct: 804 SEIGKGSEFYFTAAFPTAASEEVHD 828 >gi|165924538|ref|ZP_02220370.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str. F1991016] gi|229841162|ref|ZP_04461321.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843267|ref|ZP_04463413.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pestis biovar Orientalis str. India 195] gi|229903349|ref|ZP_04518462.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pestis Nepal516] gi|165923598|gb|EDR40730.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str. F1991016] gi|229679119|gb|EEO75222.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pestis Nepal516] gi|229689614|gb|EEO81675.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pestis biovar Orientalis str. India 195] gi|229697528|gb|EEO87575.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pestis biovar Orientalis str. PEXU2] Length = 949 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 133/256 (51%), Gaps = 7/256 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 444 VLVDVSARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 502 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 503 PQGVDRLVTAMN---NSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYL 559 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +KR+ + ++PR++ D ++Q+ N+L+NAI FT +G II + Sbjct: 560 PLVVKKRLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG--CIILQVRVRDC 617 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + RVRDTGVG+ + E+ + PF Q+ Q +GTGLGL + + +V+ G + Sbjct: 618 YLEFRVRDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVI 677 Query: 796 STPAKGTLIEIIFPLY 811 S G++ I PLY Sbjct: 678 SELGMGSIFAIRIPLY 693 >gi|94265110|ref|ZP_01288875.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93454397|gb|EAT04695.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 699 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 95/374 (25%), Positives = 173/374 (46%), Gaps = 24/374 (6%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-------QNT 505 +L SIL++ G+ +++G + N +L G+ + D L +P L Q Sbjct: 77 RLSSILQSIGAGVIATDQQGRLAFLNPVAERLTGWDLVDALNRPVGEVLALTDEESGQPL 136 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISE 563 PS + L + +D R E++ L + E + FS D Sbjct: 137 PSPLKQVLEDGEIIDWR---ERLMLTPRRGEPCPVACTVAPIASFSGIIGAVFVFRDTRR 193 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 ++ ++ L AK+ AE K +FLA +SHEIRTPLTA++G ++++ R + + Sbjct: 194 EREIQSHLLAAKEQAEGALRAKGEFLAGMSHEIRTPLTAVLGMADLLDKTRL----DSQQ 249 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 +Y +G +LD++N +LD+SKIE+G++ + LD+ V + ++ L A ++ Sbjct: 250 RQYVAASRAAGENLLDLINGILDLSKIEAGRLEVESVEFDLDQLVRQTCEIMNLRARQQG 309 Query: 684 I-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------ 736 + + S ++ D ++Q+ +N++ NAI FT G++++ Sbjct: 310 LEFVHHSSCAGPCLVMGDPTRIRQVLVNLIGNAIKFTEE-GRVMVELACLPAAPPYPGPF 368 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V DTG+G+ + E + F Q +S R GTGLGL +++ +V G+ + S Sbjct: 369 FRCTVSDTGIGIPAAKQEMIFEDFAQADSSMTRRYGGTGLGLAISRKLVTMMGGQISLVS 428 Query: 797 TPAKGTLIEIIFPL 810 G+ + PL Sbjct: 429 REGGGSTFTMEIPL 442 >gi|221233560|ref|YP_002515996.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000] gi|220962732|gb|ACL94088.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000] Length = 735 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 130/229 (56%), Gaps = 9/229 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA ++HE+RTPLT++IGF+E I+ + P +P ++ I G +L +ND+ Sbjct: 371 KSAFLANMTHELRTPLTSVIGFAEQIQAE---PALSPTVRHASDRISAGGRALLSTINDI 427 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRS 703 LD SK+ESG +++ ++ ++E ++L+ + A+ K + + + + A D + Sbjct: 428 LDFSKLESGGVSIVTAATEVNGLIAETVALLSVQADRKGLSLSYDGSAVLGLCAALDSQH 487 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFG 761 V+Q+ LN++ NAI FT GG ++ T N++ +L V DTG+G+ LE+ F Sbjct: 488 VRQVLLNLIGNAIKFTEQGG---VTVTAQRNDDGMLEIAVADTGIGIAEDHLERLFGRFS 544 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 Q+ ++ R G+GLGL + + + +A G+ + ST +G+ + PL Sbjct: 545 QVDDTIARRFGGSGLGLAIGRFLAEAMGGEIQVSSTVGRGSTFTLTLPL 593 >gi|170727652|ref|YP_001761678.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169812999|gb|ACA87583.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 1582 Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 84/255 (32%), Positives = 135/255 (52%), Gaps = 8/255 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I KQ + +L +K+ A+ + KSDFLA +SHEIRTP+ AIIG S + Sbjct: 816 NIDAAKQLEKELELSKQKADSANRAKSDFLANMSHEIRTPMNAIIGMSHLALETDL---- 871 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + Y + ++RS +L I+ND+LD SKIE+GK+++ SL++ + + LV A Sbjct: 872 DRKQRNYIDKVNRSAESLLGIINDILDFSKIEAGKLDIEKIDFSLEDVLEDVSDLVGFKA 931 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--- 735 +K I + + +++P D + Q+ N+ +NAI FT G I H+ NE Sbjct: 932 KDKGIELLFNTESSLPFYFNGDPLRLSQVLTNLSNNAIKFTEQGEVQIKVYAHSINETNI 991 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 E+ + DTG+GM+ + K K F Q +S + GTGLGL +++ +V+ G Sbjct: 992 ELAFEISDTGIGMSKEQQLKLFKAFSQADSSTTRKHGGTGLGLVISQNLVELMGGVISFE 1051 Query: 796 STPAKGTLIEIIFPL 810 S G+ + I PL Sbjct: 1052 SEEGVGSCFKFILPL 1066 >gi|295798149|emb|CAX68999.1| sensory transduction histidine kinase [uncultured bacterium] Length = 823 Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 85/251 (33%), Positives = 142/251 (56%), Gaps = 13/251 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+SE K+ + ++ K AE+ + K+ FLA +SHEI +PL AI+GFSE++ PL Sbjct: 559 DVSERKKIEERMEQEHKWAEEANKAKAKFLAHMSHEIVSPLNAIVGFSELLMKT---PLN 615 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + EY + I + L+L I+ND+LD SKI++ ++ +L+ + ++ +V+ A Sbjct: 616 DTQK-EYLSIIRETEQLLLSIINDILDFSKIDAKQLTFEEIEFNLESLIENSLLVVKGKA 674 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIIST-THTSNEE 736 E + + IP++ D +KQ+ LN+LSNA+ FT G +I ++T H +E Sbjct: 675 KEN-VSLAFKIDETIPKVYKGDPTRLKQVILNLLSNALKFTTQGSIEISVNTEKHFLEDE 733 Query: 737 VILR-----VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + R V+DTG+G+ + + PF Q S GTGLGL +A+A+V+ GK Sbjct: 734 QVFRVLQVSVKDTGIGIPLEKQKIIFDPFIQADGSVTRTYGGTGLGLSIARALVERMGGK 793 Query: 792 FYIFSTPAKGT 802 ++ S+P KG+ Sbjct: 794 IWVTSSPGKGS 804 >gi|324112761|gb|EGC06737.1| RcsC Alpha-Beta-Loop [Escherichia fergusonii B253] Length = 949 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 85/259 (32%), Positives = 133/259 (51%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT G II + + Sbjct: 561 VRKQLGLYCFIEPDVPVTLNGDPMRLQQVISNLLSNAIKFTDIG--CIILHLARDGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + +++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ I PLY +PH Sbjct: 679 GMGSQFTIRIPLYGAQYPH 697 >gi|319406430|emb|CBI80070.1| sensor histidine kinase protein [Bartonella sp. 1-1C] Length = 820 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 107/394 (27%), Positives = 198/394 (50%), Gaps = 26/394 (6%) Query: 429 PQNGIEP--EDVDTRIN-KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 PQ GI E++ +I+ +R+ + L+ S+G+ + +G + +N A+SKL+ Sbjct: 432 PQGGITWLYENLTEKIDLERRYNTLIKIQGETLDKLSEGVVVFGTDGRLRLSNPALSKLW 491 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 P + + + NH + + ++ + IT G ++ S RI + Sbjct: 492 SLPHNLPIEGA-------HITELQNHCSALTIGEEWKKFAQFIT-GCAEKRDTYSGRIDL 543 Query: 546 KK----------LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 K LP LT ++++ L + EK +++F+ VS+E Sbjct: 544 KSGIIIDYTLAPLPNGQTM-LTFVNVTDTVHIARALQEKNEALEKADRLRNEFVQHVSYE 602 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 +RTPLT IIGFS+++++Q FGP N R EY YI ++L+IVND+LD++ +++G M Sbjct: 603 LRTPLTNIIGFSDILRDQIFGP-TNERQQEYLGYIHSESGVLLNIVNDILDLATLDAGIM 661 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 L +PV + EA+++A++ V+ + + I + + + ++ + AD + QI +N+L+NA Sbjct: 662 ILDIKPVHIAEAMAQAVARVEERLHGRHITLSQNISPSLKFMSADATRLHQIFVNVLNNA 721 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 I+F II +T ++ +I V + G + L++ K F ++ G G Sbjct: 722 INFATEKS-IIEFCANTQDDYIIFSVHNEGSDIPTDILDRIFKRF--TSHAHHGGRAGAG 778 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 LGL L K+ V+ + G+ I + +GT ++ FP Sbjct: 779 LGLSLVKSFVELHDGRVEILTGMGQGTTVKCFFP 812 >gi|255533423|ref|YP_003093795.1| PAS sensor protein [Pedobacter heparinus DSM 2366] gi|255346407|gb|ACU05733.1| PAS sensor protein [Pedobacter heparinus DSM 2366] Length = 656 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 84/249 (33%), Positives = 139/249 (55%), Gaps = 13/249 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI++ K+ + +L AK IAE + K+DFL+ +SHEIRTPL IIG + ++K + Sbjct: 257 DITQKKEIELELLRAKDIAEHSAKAKTDFLSVMSHEIRTPLNGIIGIANLLKLKH----- 311 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 EY + S + +L ++ND+LD++KIES K+ L V++ E V + + A Sbjct: 312 TMDQEEYVRSLIFSADHLLQLINDILDLTKIESDKLELVLAEVNIFELVRNIKNQFKSLA 371 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHTS 733 K I++++ ++IP R++AD + QI N++SNAI FT SG ++ T + + Sbjct: 372 EAKGIVVKSFIDDDIPQRLIADPVRLGQILNNLISNAIKFTESGAVTITLSLVALTANKA 431 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 N V V+DTG+G+ E + F Q+ + GTGLGL + + +V+ + G+ Sbjct: 432 N--VHFSVKDTGMGIPEELHETIFESFKQVQQDVHRKHTGTGLGLAITQKLVELHDGRIL 489 Query: 794 IFSTPAKGT 802 + ST +GT Sbjct: 490 LKSTAGQGT 498 >gi|259909469|ref|YP_002649825.1| hybrid sensory histidine kinase BarA [Erwinia pyrifoliae Ep1/96] gi|224965091|emb|CAX56623.1| Signal transduction histidine-protein kinase [Erwinia pyrifoliae Ep1/96] Length = 909 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK+ A++ + KS+FLA +SHE+RTPL +IGF+ Q + N +Y + Sbjct: 278 ELDLAKRRAQEAARIKSEFLANMSHELRTPLNGVIGFTR----QTLKTMLNSTQRDYLHT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E + L+ A+EK + + + Sbjct: 334 IERSANNLLSIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILRVRDTG 745 +++P + D ++QI +N+L NAI FT SG I + SN E+ +++ DTG Sbjct: 394 IQSDVPDNAIGDPLRMQQIIVNLLGNAIKFTESGNIDIRVEKRALSNNRMELEVQIHDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++ + K + F Q S R GTGLGL + + +V+ G+ S +G+ Sbjct: 454 IGISEKQQSKLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGS 510 >gi|186685533|ref|YP_001868729.1| integral membrane sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186467985|gb|ACC83786.1| integral membrane sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 937 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 80/250 (32%), Positives = 138/250 (55%), Gaps = 21/250 (8%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 S ++ ++L AK A+ + KSDFLA +SHE+RTPL I+G+++++ + Sbjct: 444 SRVEERTHELKEAKLTADAANHAKSDFLANMSHELRTPLNGILGYAQILAR----TASDE 499 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + + I + G+ +L ++ND+LD+SKIE+GK+ L P L + + + ++ A + Sbjct: 500 KQQRGIDIIYQCGSHLLTLINDILDLSKIEAGKLELQLVPFYLPAFLQSVVEICRIKAEQ 559 Query: 682 KRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K I I N+ I+AD + ++Q+ +N+L NAI FT G + T EV+L Sbjct: 560 KSIEFIYQPPENSAMGIVADEKRLRQVLINLLGNAIKFTDKG-------SVTFRVEVLLG 612 Query: 741 --------VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++DTG+GM+ +LEK PF Q+ +S++ + EGTGLGL +++ V+ K Sbjct: 613 DITNLRFYIQDTGIGMSPQQLEKIFLPFEQVGDSKR-QSEGTGLGLAISQRFVELMASKI 671 Query: 793 YIFSTPAKGT 802 + S G+ Sbjct: 672 QVESQLGVGS 681 >gi|153954091|ref|YP_001394856.1| sensor kinase [Clostridium kluyveri DSM 555] gi|219854704|ref|YP_002471826.1| hypothetical protein CKR_1361 [Clostridium kluyveri NBRC 12016] gi|146346972|gb|EDK33508.1| Predicted sensor kinase [Clostridium kluyveri DSM 555] gi|219568428|dbj|BAH06412.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 437 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 86/267 (32%), Positives = 152/267 (56%), Gaps = 19/267 (7%) Query: 559 HDISEW-------KQEKNKLSHAKK----IAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 HD+SE K ++ KL +A+K I E+ K +F ++HE +TP++ I Sbjct: 134 HDVSELIKNQEEIKAQQEKLLNAEKSRNEILEEAIKSKEEFFYLMTHEFKTPISVINLAL 193 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 + I + + + +Y N I ++ N L +VN+LLDI++I+SG + ++ S+ Sbjct: 194 QAI-DLMYKKEITEKVNKYLNTIKQNVNRQLRLVNNLLDIARIDSGHLKMNKSCFSIIHV 252 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQI 725 + ++ VQLYA +K ++++ F N+ + I +D +++I LN+LSNA+ FTPSG I Sbjct: 253 IEAIVNSVQLYAKQKNVILK--FNTNLSKKNIYSDEEKLERILLNLLSNALKFTPSGKSI 310 Query: 726 II--STTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 I+ ST N E+I + V+D G+G+ + + + FGQ+ +S + EGTGLGL L K Sbjct: 311 IVTLSTKKYKNGEMISISVQDEGMGIPLDKQKTIFERFGQVDSSLSDQAEGTGLGLHLVK 370 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 +V++ G+ + ST +G++ ++ P Sbjct: 371 LLVNSLDGEILLNSTVGEGSIFTVLLP 397 >gi|83593368|ref|YP_427120.1| PAS/PAC sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC 11170] gi|83576282|gb|ABC22833.1| PAS/PAC sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC 11170] Length = 866 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 104/364 (28%), Positives = 176/364 (48%), Gaps = 26/364 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +I+ DG+ +++ +G I N A ++FGY +++ + + + + H Sbjct: 360 AIIATMVDGLIVMDDQGRIDLFNAAAQRIFGYDESEVVGQNAALLMSAEDAA--GHAEPF 417 Query: 516 ILSL-DLRQTL---EKITLGSTKEEKLLSLRIIIKKLPFSS--------CYSLTMHDISE 563 L L D R L + +G K L + I LP ++ + DIS+ Sbjct: 418 GLHLWDGRSPLLNGTRKVIGRRKNGASFPLAVAISALPAPPPGGAPARRLFTGVVRDISD 477 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 + ++ L K AE + KSDFLA +SHE+RTPL ++G ++++ + PL + Sbjct: 478 QIRHESDLRKVKDEAEVANRAKSDFLAVMSHELRTPLNGVLGMADLLCDT---PL-DAEQ 533 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYAN 680 Y I S +L I+ND+LD+SKIE+G ++L F+P +L E V +L++ A Sbjct: 534 RRYTRTIAISAEALLVIINDILDLSKIEAGHLDLESRPFDPATLLEGVR---TLMEGPAR 590 Query: 681 EKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 +K I +RTS P + L D ++QI LN+ +N + FT G + + + + Sbjct: 591 DKAIALRTSIEGAKPPLRLGDEGRLRQILLNLANNGVKFTEK-GSLTLRLKAGTGGALRF 649 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ + + F Q+ S R G+GLGL + + +V G+ STP Sbjct: 650 EVEDTGIGIPKEKQDTLFHDFTQVSASTARRFGGSGLGLSICRRLVGLMGGRLGFDSTPG 709 Query: 800 KGTL 803 G+L Sbjct: 710 VGSL 713 >gi|283479542|emb|CAY75458.1| sensor histidine kinase/response regulator [Erwinia pyrifoliae DSM 12163] Length = 924 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK+ A++ + KS+FLA +SHE+RTPL +IGF+ Q + N +Y + Sbjct: 293 ELDLAKRRAQEAARIKSEFLANMSHELRTPLNGVIGFTR----QTLKTMLNSTQRDYLHT 348 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E + L+ A+EK + + + Sbjct: 349 IERSANNLLSIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLN 408 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILRVRDTG 745 +++P + D ++QI +N+L NAI FT SG I + SN E+ +++ DTG Sbjct: 409 IQSDVPDNAIGDPLRMQQIIVNLLGNAIKFTESGNIDIRVEKRALSNNRMELEVQIHDTG 468 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++ + K + F Q S R GTGLGL + + +V+ G+ S +G+ Sbjct: 469 IGISEKQQSKLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGS 525 >gi|251790598|ref|YP_003005319.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Dickeya zeae Ech1591] gi|247539219|gb|ACT07840.1| histidine kinase [Dickeya zeae Ech1591] Length = 955 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 130/262 (49%), Gaps = 6/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 444 VLLDVSARVRMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLP 503 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 N + S L+L I++D+LD SKIES ++ + + E ++ ++ Sbjct: 504 SDAN----RLVTAMQNSSALLLKIISDILDFSKIESEQLKIEPSEFAPREVINHILNNYL 559 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +KR+ + N+P R++ D ++Q+ N+LSNAI FT +G I+ + Sbjct: 560 PLVVKKRLELYCYIDPNVPSRLMGDAVRLQQVLSNLLSNAIKFTDTGC-IVFQVACSDEG 618 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++ +VRDTGVG+ + K PF Q Q +GTGLGL + + +V G I Sbjct: 619 YLVFKVRDTGVGIDTRSVMKLFDPFFQAGTGVQRHFQGTGLGLAICEKLVSLMDGDITIE 678 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ I PLY +P Sbjct: 679 SEPGLGSEFGIRIPLYRAHYPQ 700 >gi|167469186|ref|ZP_02333890.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia pestis FV-1] Length = 850 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 133/256 (51%), Gaps = 7/256 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 421 VLVDVSARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 479 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 480 PQGVDRLVTAMN---NSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYL 536 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +KR+ + ++PR++ D ++Q+ N+L+NAI FT +G II + Sbjct: 537 PLVVKKRLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG--CIILQVRVRDC 594 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + RVRDTGVG+ + E+ + PF Q+ Q +GTGLGL + + +V+ G + Sbjct: 595 YLEFRVRDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVI 654 Query: 796 STPAKGTLIEIIFPLY 811 S G++ I PLY Sbjct: 655 SELGMGSIFAIRIPLY 670 >gi|24216361|ref|NP_713842.1| two-component hybrid sensor and regulator [Leptospira interrogans serovar Lai str. 56601] gi|45656450|ref|YP_000536.1| histidine kinase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24197641|gb|AAN50860.1|AE011521_6 two-component hybrid sensor and regulator [Leptospira interrogans serovar Lai str. 56601] gi|45599685|gb|AAS69173.1| histidine kinase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 696 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 81/236 (34%), Positives = 130/236 (55%), Gaps = 8/236 (3%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L +IA++E+ K+ F++ +SHEIRTP+T I+G +E++ N PL NP + I Sbjct: 310 LKEKSEIAQQENQAKTVFISNISHEIRTPMTGILGITELLLNT---PL-NPDQKDSLELI 365 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 RSG+ +L IVN LLD SK ++GK+ L P ++ E +++ +SL++ + + + F Sbjct: 366 QRSGDKLLKIVNHLLDFSKADTGKIELESIPFNMQELLNDLVSLLRTEILKNKNELNILF 425 Query: 691 ANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGV 746 N P++L D + QI N++SNA FT G ++ +N E+ R V DTG+ Sbjct: 426 PPNFPKLLKGDPVRIGQILTNLVSNATKFTKEGTVEVGFHILEKTNSELSFRTWVFDTGI 485 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+ + +PF Q S GTGLGL + K +++ GK ++ S P GT Sbjct: 486 GIPPTKFNSVFEPFVQSDKSITRHFGGTGLGLSITKKLIELMGGKIHVESQPGIGT 541 >gi|254787007|ref|YP_003074436.1| sensory box histidine kinase/response regulator [Teredinibacter turnerae T7901] gi|237685955|gb|ACR13219.1| sensory box histidine kinase/response regulator [Teredinibacter turnerae T7901] Length = 668 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 79/252 (31%), Positives = 135/252 (53%), Gaps = 5/252 (1%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K + + AK AE+ + KS+FL+ +SHE+RTPL AI+G+ ++ + Sbjct: 269 DITELKNTQLAVVQAKVAAEQANQAKSEFLSSMSHELRTPLNAILGYVQLFD---YDTNL 325 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P + + ++G +L ++N++LD++KIE+G+M L EPV + EA+ LV A Sbjct: 326 TPDQCDNLQEVKKAGTHLLHLINEVLDLAKIEAGRMTLSMEPVYPQRLLDEAVRLVSPLA 385 Query: 680 NEKRILI-RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 E+ I I R + + I AD +KQ LN++SNA+ + G + IS T + Sbjct: 386 QEQGITIERDALQHQQSAIFADNTRLKQALLNLISNAVKYNTKDGSVNISLTAVGEGRLR 445 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V DTG G+ + + +PF ++ +++ EG+G+GL + K +V+ G S Sbjct: 446 IMVTDTGRGIPDALQAQVFEPFNRL-HAELGAVEGSGVGLVITKRLVEMMGGTLGFHSEV 504 Query: 799 AKGTLIEIIFPL 810 G+ + PL Sbjct: 505 GVGSRFWMDLPL 516 >gi|150398898|ref|YP_001322665.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcus vannielii SB] gi|150011601|gb|ABR54053.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcus vannielii SB] Length = 421 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 137/256 (53%), Gaps = 9/256 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 DI+E K + KL + ++ KS+F A +SHEIRTP+T+I G++E++ ++ G Sbjct: 170 AFQDITEQKLAEQKLKKSYDELKELDRLKSEFTAIISHEIRTPITSIKGYTELLNDESMG 229 Query: 617 PLGNPRYIEYANYID---RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 L N + + ++ R G LV +D+LDIS+IE L+ + V + + + +S Sbjct: 230 KLNNNQKMCLNTILENVIRLGRLV----SDVLDISRIERNTFTLNIQKVDVKDVLEHVLS 285 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + A +K I + N I AD + Q+ NI NAI F+P ++ I+ Sbjct: 286 ELAPIALKKHIKLSLEIPN--ITIDADKDRLNQVFTNITENAIKFSPENEKVEITGKEGL 343 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 N ++++ ++D G+G++ E EK F QI +S + + G GLGLP++K ++ A+ GK + Sbjct: 344 NSDILISIKDNGIGISKNEFEKIFDRFYQIDSSNRRKKGGAGLGLPISKGIIKAHNGKIW 403 Query: 794 IFSTPAKGTLIEIIFP 809 + S +G+ I P Sbjct: 404 VESELNQGSTFYISLP 419 >gi|119490557|ref|ZP_01622999.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119453885|gb|EAW35041.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1056 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 87/267 (32%), Positives = 144/267 (53%), Gaps = 29/267 (10%) Query: 559 HDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 +DI+E KQ +N+L A+K A+ + KS FLA +SHE+RTPL AI+GFS+++ Sbjct: 562 NDITERKQVENQLQTQNIELEIARKNADAANQAKSTFLANMSHELRTPLNAILGFSQLMA 621 Query: 612 NQRFGPLGNPRYIEYAN---YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 NP ++ + I+RSG +L ++ND+LD+SKIE GK+ L +P + Sbjct: 622 Q-------NPIFVSASKELEIINRSGEHLLSLINDILDLSKIEVGKVVLEEKPFDFYILL 674 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII 727 ++++ AN K I + S + IP+ I D ++Q+ +N++ NAI FT G + Sbjct: 675 DTLEEMLKMRANAKGIQL-ISERDQIPQYIKTDENKLRQVLINLIGNAIKFTNQGSITLR 733 Query: 728 STTHT---------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 +H+ S ++ V DTG G++ E+++ F Q +Q + +GTGLGL Sbjct: 734 VDSHSPDVNSLTPNSPVQLFFEVEDTGAGISTEEIDQLFDAFVQTSAGKQSQ-QGTGLGL 792 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIE 805 +++ V GK + S KG+L + Sbjct: 793 SISRKFVQLMGGKISVKSQLGKGSLFQ 819 >gi|66046171|ref|YP_236012.1| PAS [Pseudomonas syringae pv. syringae B728a] gi|63256878|gb|AAY37974.1| PAS [Pseudomonas syringae pv. syringae B728a] Length = 1353 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 129/255 (50%), Gaps = 8/255 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+E +L AK AE ++ KS FLA +SHEIRTP+ A+IG S ++ N Sbjct: 616 QDITERLHHSAELHAAKSSAEAANAAKSLFLANMSHEIRTPMNAVIGISHLLHNTAL--- 672 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N + + + +G +L I+ND+LDI+KIE+G+M L P S + + E L Sbjct: 673 -NDQQRQLLTKLQIAGRTLLGIINDILDIAKIEAGEMRLEHNPFSPRQLLDELGELFTPQ 731 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE 736 A EK + + ++P +++ D V QI +N++ NA+ FT GG + +S + Sbjct: 732 AQEKGLRFSVNVVASLPGQLIGDALRVNQILMNLVGNALKFTSVGGVDVTVSREDDHADT 791 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 LR V+DTG G+ L + PF Q S R GTGLGL + + + + G+ + Sbjct: 792 CCLRFSVQDTGCGIPGDVLGQLFSPFTQADASTTRRFGGTGLGLSVVRGLAEQMGGRIGV 851 Query: 795 FSTPAKGTLIEIIFP 809 S G+ + P Sbjct: 852 ESELGTGSEFWVELP 866 Score = 41.2 bits (95), Expect = 0.79, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 15/170 (8%) Query: 443 NKRKMEIEVMQ--LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 +RK ++ Q L +I+E +SD I +G I++ NRA ++FGY ++L +P Sbjct: 335 RQRKQQVVAGQARLATIVENSSDAIIGEALDGRIITWNRAAEQMFGYDEHEVLGRPLAPL 394 Query: 501 LEQNTPSVMNHYLTEILSLDLRQ----TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 L P + H ++L R TLE L K +L+ + I + + L Sbjct: 395 L---VPPELVHEDEQLLERVARGERGPTLETRRL--HKNGQLIDVTITCSFIRETDGTLL 449 Query: 557 ----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 MHDI++ K+ + L E++ S ++ L+RV+ ++ L A Sbjct: 450 GAAKMMHDITDRKRVERYLMEFNAQLEQQVSERTAELSRVAGLLQGVLDA 499 >gi|325496736|gb|EGC94595.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia fergusonii ECD227] Length = 949 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 85/259 (32%), Positives = 133/259 (51%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT G II + + Sbjct: 561 VRKQLGLYCFIEPDVPVTLNGDPMRLQQVISNLLSNAIKFTDIG--CIILHLARDGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + +++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ I PLY +PH Sbjct: 679 GMGSQFTIRIPLYGAQYPH 697 >gi|282899742|ref|ZP_06307705.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] gi|281195357|gb|EFA70291.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] Length = 407 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 127/236 (53%), Gaps = 2/236 (0%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S KS FL+ +SHE+RTP+ AIIGF++++ +F L + + ++ + +L + ++ Sbjct: 170 SRLKSQFLSTISHELRTPMNAIIGFAQILLRPKFSQLSSVQTDMLKRILNNAKDLSM-LL 228 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 N++LD SKI+SG++ L E L + V+ + ++ K++ + + D Sbjct: 229 NEVLDFSKIDSGRLGLKAEIFDLSKMVNHTVDEIRSLVEAKKLSLSVEIDLENTLVFNDP 288 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 V+QI +N+LSNAI FT G + + T TS + + +RDTG+G++N + E + F Sbjct: 289 VRVRQILINLLSNAIKFTERGC-VWVRVTETSKSRIAISIRDTGIGISNQDCEHIFEAFR 347 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 Q+ + GTGLGL + ++V GK + S A G+L + P + + H Sbjct: 348 QVDQGMSRKYPGTGLGLAIIDSLVKIMGGKIMLESQLAVGSLFTVELPRQVSVNSH 403 >gi|254796890|ref|YP_003081727.1| Sensor histidine kinase, PleC-like protein [Neorickettsia risticii str. Illinois] gi|254590126|gb|ACT69488.1| Sensor histidine kinase, PleC-like protein [Neorickettsia risticii str. Illinois] Length = 519 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 86/272 (31%), Positives = 141/272 (51%), Gaps = 14/272 (5%) Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 +L + I +K+L F S T S ++ KN + + +++ S F++ ++HE+R Sbjct: 251 ILWIFIFLKRLEFVFVDSRTRG--STGRETKNS-----SVLGQIATNSSHFISCITHELR 303 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TPL II FSE+IK++ G + N +Y+ Y I + G +L V++L+DI+K S M Sbjct: 304 TPLNVIIAFSEMIKDECLGTITNKKYVCYGEEIYKFGTSLLKTVDNLIDITKSNSMLMIP 363 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717 VS+ + ++EA+ + +A K I + S ++P I D VK+ NILSNAI Sbjct: 364 KKGYVSVQQIIAEAVRNCRTFALTKEISLCKSIDADLPEIFLDRDQVKKAITNILSNAIK 423 Query: 718 FTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 F+ +G + I E I + + D+G GM K + Q+ NS + +G G+ Sbjct: 424 FSENGATVSIRACQNCEEGSISITIEDSGSGM------KVVNGVPQLENSLTKKADGLGI 477 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GL L++ ++ N G I+S KGT I F Sbjct: 478 GLLLSRNIIHLNNGSLEIYSQVGKGTKTTITF 509 >gi|325921523|ref|ZP_08183376.1| putative periplasmic ligand-binding sensor domain [Xanthomonas gardneri ATCC 19865] gi|325547993|gb|EGD18994.1| putative periplasmic ligand-binding sensor domain [Xanthomonas gardneri ATCC 19865] Length = 1193 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 133/242 (54%), Gaps = 8/242 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S K+ FLA + HE+RTP+T ++G SE++ PL + R YA+ I Sbjct: 803 HKRELAEQASQAKTRFLATLGHEVRTPMTGVLGMSELLLQT---PL-DGRQQGYASAIQS 858 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 +G +L +VND LD+++IE+GK+ L + L + + + LV+ A +K+++ + Sbjct: 859 AGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLIRQVAELVRPTAEQKQLVFECELED 918 Query: 693 NIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI-LRVRDTGVGMT 749 +P L D V+QI LN+L NA+ FT G + +S +++ I + VRDTG GM+ Sbjct: 919 ALPPALHGDASRVQQILLNLLFNAVKFTERGSVSLRVSVLPQGHKQGIRMEVRDTGPGMS 978 Query: 750 NYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + + F Q + + R G+GLGL + + + A G+ + S +G + Sbjct: 979 AEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGEVTVSSELGRGACFVVEL 1038 Query: 809 PL 810 PL Sbjct: 1039 PL 1040 >gi|312116341|ref|YP_004013937.1| PAS/PAC sensor hybrid histidine kinase [Rhodomicrobium vannielii ATCC 17100] gi|311221470|gb|ADP72838.1| PAS/PAC sensor hybrid histidine kinase [Rhodomicrobium vannielii ATCC 17100] Length = 663 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 111/385 (28%), Positives = 184/385 (47%), Gaps = 54/385 (14%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L + +EA SDG AI + +L N A +KL +ED L P F + Sbjct: 145 RLRAAVEAISDGFAIYDENDRLLIANEAFTKLH-EGIEDAL-GPGASFEDL--------- 193 Query: 513 LTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLPFS--------SCYSLTMH--- 559 LR TL + I +G ++ L ++ K FS C+ H Sbjct: 194 --------LRSTLARGLIDIGCEDPDRWLDRQLTASKHAFSEIHMRFANGCWMSRRHKRM 245 Query: 560 ----------DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 DIS K+++ +L A+ AE KS FL +SHE+RTP+ IIGF+E+ Sbjct: 246 ENNETVRIWTDISSLKRQQAELEDARARAEAADRAKSHFLTNMSHEMRTPMNGIIGFNEL 305 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + G L + + +YA I S ++ +++++LD+ KIE G + + P L++ +S Sbjct: 306 LLQ---GNLSDTQR-DYATLIQSSSKSLMSLIDEILDLGKIERGTLEIQSAPFKLNQLIS 361 Query: 670 EAISLVQLYANEKRILIRTSFANNIPR---ILADLRSVKQIALNILSNAIHFTPSGGQII 726 A SL Q A+EK + ++ S + +P + D+ ++QI +N+L NAI FT + G++ Sbjct: 362 AARSL-QALADEKALQLKVS--STLPSQTIAIGDVERIRQILVNLLGNAIKFTET-GEVT 417 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 +S + N + V DTG G+ L K F Q + + +G+GLGL +AK + + Sbjct: 418 LSIS-AENNGLAFSVNDTGPGIAPDRLRKIFNRFYQADDLCSGKVKGSGLGLAIAKELTE 476 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLY 811 G + S +G+ + PL+ Sbjct: 477 LMGGTITVESERGEGSTFLVWLPLW 501 >gi|258514836|ref|YP_003191058.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257778541|gb|ACV62435.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 1267 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 77/258 (29%), Positives = 140/258 (54%), Gaps = 11/258 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++ K+ + L+ AK+ AE + KS+FLA +SHEIRTP+ IIGF ++ + Sbjct: 486 DVTVRKKLEQALTEAKEEAEYSARVKSEFLANMSHEIRTPMNGIIGFCHLLMQTQL---- 541 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N + + Y I +L I+ND+LD SK+E+GKM++ +L+E +++ L++ A Sbjct: 542 NSKQLNYLTKIRSQSQHLLGIINDILDFSKLEAGKMSVEHVDFNLEEVIADLFYLLENQA 601 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII----ISTTHTSN 734 ++K + + + +P L D +KQ+ +N+ +NAI F+ G + I + + + Sbjct: 602 SQKGLELLANVQKGVPAHLKGDPLRLKQVLVNLANNAIKFSDQGNIFLRVEKIDQSDSDS 661 Query: 735 EEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++VI+ V D G+G+T ++++ F Q +S + GTGLGL ++K +V+ G+ Sbjct: 662 DQVIISFSVEDNGIGLTEEQMQRLFNSFSQADSSTTRKYGGTGLGLAISKYLVELMGGEI 721 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S G+ P Sbjct: 722 SVSSEYGVGSTFSFSLPF 739 >gi|320155329|ref|YP_004187708.1| BarA sensory histidine kinase ( VarS GacS) [Vibrio vulnificus MO6-24/O] gi|319930641|gb|ADV85505.1| BarA sensory histidine kinase (VarS GacS) [Vibrio vulnificus MO6-24/O] Length = 928 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 139/252 (55%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQ-TDYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L+I+ND+LD SK+E+GK+ L P E++ E ISL A+EK + I Sbjct: 331 TIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVISLQATSAHEKGLEITL 390 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDT 744 IP ++ D ++Q+ N++ N+I FT G + + S + + L+ V+DT Sbjct: 391 KIDPRIPEGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRAQSGDSLDLQFMVKDT 450 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTF 510 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 511 WFTLRLHSTQMP 522 >gi|312881107|ref|ZP_07740907.1| multi-sensor signal transduction histidine kinase [Aminomonas paucivorans DSM 12260] gi|310784398|gb|EFQ24796.1| multi-sensor signal transduction histidine kinase [Aminomonas paucivorans DSM 12260] Length = 695 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 109/353 (30%), Positives = 179/353 (50%), Gaps = 41/353 (11%) Query: 475 LSTNRAVSKLFGYPVEDI--LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 L + A S L G ED +R+ + LE TP + + D L++ + Sbjct: 273 LEGDAATSWLLGILPEDRDRVRQAWEDHLEGKTPLYECEFRRRTAAGDTLWVLDRGKV-F 331 Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 ++ K LR++ L DI+ KQ + L HAK+ AE S KS F+AR+ Sbjct: 332 QRDRKGQPLRVVGAVL-----------DITPRKQAEEILRHAKENAEAASRAKSTFVARI 380 Query: 593 SHEIRTPLTAIIGFSEVIKNQ---RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 SHEIRTPL AI+G+++++K + R P G R E+ + + RSG+ +L +V D+L++S+ Sbjct: 381 SHEIRTPLNAILGYTQLLKEREEVRALP-GELR--EWLDTVSRSGHHLLTVVEDVLEMSR 437 Query: 650 IESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVK 705 IE+G++ L F+P +L + E +++L A EK + + + +PR L AD V+ Sbjct: 438 IEAGRLVLQERDFDPRALLGQIEE---MLRLRAEEKSLRLFLERTDTLPRSLHADEGKVR 494 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE--------EVILRVRDTGVGMTNYELEKAM 757 Q+ +N++ N++ FT + G + +S T E +V +RV DTG G+ +K Sbjct: 495 QVVINLVGNSLKFT-TQGSVTLSVGWTPLEGSWEAPRVKVWIRVEDTGPGIPLGLTDKLF 553 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI-FSTPAKGTLIEIIFP 809 +PF + RG GTGLGL +++ G + + P +G FP Sbjct: 554 EPF---ERGLEGRG-GTGLGLAISRQFARFLGGDLILERNAPGRGCSFLFTFP 602 >gi|84685347|ref|ZP_01013245.1| sensory box histidine kinase/response regulator [Maritimibacter alkaliphilus HTCC2654] gi|84666504|gb|EAQ12976.1| sensory box histidine kinase/response regulator [Rhodobacterales bacterium HTCC2654] Length = 847 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 103/387 (26%), Positives = 186/387 (48%), Gaps = 25/387 (6%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 R +E ++ +I+ + D I + NR G I++ N A +FGY E ++ + + + Sbjct: 211 RTIEAASRRMETIVNTSLDAIVVSNRTGRIIAFNDAAEIIFGYKREQVIGQLMSEII--V 268 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR----IIIKKLPFSSC------- 553 P + N + E R T EK +G + KL ++R + ++ S Sbjct: 269 PPHLRNAH--EAGMERFRTTGEKRVIGQGRI-KLEAMRSDGSVFPAEMAIESAEGSDGEI 325 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + + DIS + + L A+ A KS+FLA +SHE+RTPL ++G ++K Sbjct: 326 FVGYLRDISHRVKAETDLVEARDKAVAGEKAKSEFLAVMSHEMRTPLNGLLGTLALLKGT 385 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + + + +Y + ++ SG L+L +ND+LD++K E+GK+++ F P L V + Sbjct: 386 KL----SAKQAQYVDNLEVSGGLLLTHINDVLDVTKYEAGKLDVDFVPTDLSALVRSVVD 441 Query: 674 LVQLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQIII---ST 729 + A+ I S+ +P ++ D + ++Q+ +N++ NA+ FT GG+I I + Sbjct: 442 NQRDLASASENTIEWSWVGKPLPPVMTDPQRLRQVLINLVGNAVKFT-RGGRIRIEIGAV 500 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 +V + V DTG+G+ ++++ + F S GTGLGL +A+ + A Sbjct: 501 PQGGGADVTITVSDTGIGIAPEDIDRLFEDFETGDRSYGRARNGTGLGLGIARRLTRALG 560 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHP 816 G S +G+ I PL S P Sbjct: 561 GTIGAESELGEGSTFWIDLPLDYASDP 587 >gi|26990466|ref|NP_745891.1| multi-sensor hybrid histidine kinase [Pseudomonas putida KT2440] gi|24985438|gb|AAN69355.1|AE016572_11 sensor histidine kinase/response regulator [Pseudomonas putida KT2440] Length = 1155 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 74/258 (28%), Positives = 138/258 (53%), Gaps = 3/258 (1%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E Q + +L ++ S +KS+FLA +SHE+RTPL + + ++++ G L + Sbjct: 465 ELSQAQLELQARADDLQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENAEGNLSEEQ 524 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +++A I +GN +L+++ND+LDI+K+E+GK+ + E ++ V + Q A K Sbjct: 525 -VKFAESIYSAGNDLLNLINDILDIAKVEAGKLEVRPETTQVERLVEGLRGMFQPLAGHK 583 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + +P L D + ++QI N+LSNAI FT G Q+ ++ + ++ ++ V Sbjct: 584 GLAFEVKVEPQVPVTLFTDRQRLEQILKNLLSNAIKFTERG-QVSMNVSFQADSGIVFAV 642 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RDTG+G+ + + F Q+ + R GTGLGL +++ + G+ + S+P +G Sbjct: 643 RDTGIGIAADQQQAIFGAFHQVDGTSNRRYGGTGLGLSISRDLAHLLGGQINVDSSPGQG 702 Query: 802 TLIEIIFPLYDTSHPHDC 819 ++ +I P + D Sbjct: 703 SVFSLILPERYAAEAEDV 720 >gi|308048557|ref|YP_003912123.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799] gi|307630747|gb|ADN75049.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799] Length = 899 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 83/238 (34%), Positives = 136/238 (57%), Gaps = 10/238 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A + S KS+FLA +SHE+RTPL +IGF+ +++K PL + + +Y Sbjct: 272 ELDIAKKRALEASRIKSEFLANMSHELRTPLNGVIGFTRQLLKT----PLHDNQK-DYLR 326 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS + +L I+ND+LD SK+E+GKM L P +L +++ E ++L+ A +K + + Sbjct: 327 TIERSASNLLSIINDILDFSKLEAGKMVLDNVPFALRDSLDETLTLLSGSAYDKGLEMVV 386 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDT 744 +P + D+ ++Q+ N++ NAI FT G ++ + S E V+LR V DT Sbjct: 387 EIDERVPDSLCGDVMRIQQVITNLMGNAIKFTDKGSVRLSLDLADESAERVLLRAEVSDT 446 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G+ + + FGQ +S R GTGLGL + K +V+ G+ S +G+ Sbjct: 447 GIGIAEEQQPMLFQAFGQADSSVSRRFGGTGLGLVITKRLVNQMEGQIGFTSHQNQGS 504 >gi|239787729|emb|CAX84244.1| Sensor protein [uncultured bacterium] Length = 817 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 85/260 (32%), Positives = 136/260 (52%), Gaps = 12/260 (4%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L K+ AE S KS FLA +SHE RT L I+GF+ ++ R G + E + Sbjct: 325 RELLQTKQAAEAASHAKSVFLANMSHEWRTTLHTILGFARLLL--RNGVTATEQQ-ESLH 381 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++SG +LD+VND+L+IS+IESG M L+ E V L +++ ++++L A E+ + Sbjct: 382 IIEKSGQHLLDLVNDVLEISRIESGTMTLNQECVDLPGLLADMGNMMRLRATERSLSFVV 441 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-------VILR 740 + + +IPR + D +Q+ LN+L NAI FT GG + + E +I Sbjct: 442 TLSEDIPRWVCMDGGKWRQVLLNLLGNAIKFTRQGGVTMRVALQPAPMEQPDGKPMLICE 501 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG G+ ++++ +PF Q+ +S EGTGLGL +++ + G+ S Sbjct: 502 VEDTGEGIAEQDMQRIFEPFIQVGHSAGSM-EGTGLGLAISRHYLRLMGGELEATSQRGA 560 Query: 801 GTLIEIIFPLYDTSHPHDCI 820 G+L PL P + Sbjct: 561 GSLFRCRVPLVSAHQPEGVV 580 >gi|218438404|ref|YP_002376733.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218171132|gb|ACK69865.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 404 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 137/247 (55%), Gaps = 2/247 (0%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++++ ++ + ++ S KS FLA +SHE+RTP+ AI+GFS+++ + PL + Sbjct: 155 ELERQRRQIEIQNEQLQETSRLKSQFLATMSHELRTPINAIMGFSQMLLRRYPEPLTPAQ 214 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 D S NL L ++ND+LD SKIE+GK+ LH L + V ++ A K Sbjct: 215 TDLVQRIFDNSKNL-LTLLNDVLDFSKIEAGKLILHPHEFDLKQLVVLTTEELRSLAISK 273 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + ++ P+I+ D +++I +N+LSNAI FT +GG + ++ + + + + V Sbjct: 274 NLSLQIQVEVENPKIINDQSCLRRILVNLLSNAIKFTETGG-VSVTVWELNPDLMAIAVE 332 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ LE + F Q + + GTGLGL ++++++ GK + S KG+ Sbjct: 333 DTGIGIAQEHLEHIFEVFRQADQTLTRKYGGTGLGLAISESLIKMMHGKITVTSELGKGS 392 Query: 803 LIEIIFP 809 + +I FP Sbjct: 393 IFQIEFP 399 >gi|253575383|ref|ZP_04852721.1| multi-component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845380|gb|EES73390.1| multi-component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 469 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 123/224 (54%), Gaps = 4/224 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 + +F A +SHE+RTP+T + G+++V+K + + +Y + I + +V+DL Sbjct: 241 RQEFFANISHELRTPITYLEGYAQVLKKRLYET--EEEKDKYLDIIHEEAMRLQHLVDDL 298 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 D++K+E GK++L E + L E A+ ++L A EK + ++T +NIP I D Sbjct: 299 FDLAKMEEGKVSLSLEWIDLAEITDNAVQKIKLKAGEKNLSLQTKINSNIPLIYGDGLRT 358 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +Q+ LN+L NA+ +T G I+ + + + V DTG+G+ E+ F ++ Sbjct: 359 EQVLLNLLENAVRYTEKGS--IVVELDQNRSFIYIAVEDTGMGIPEDEIPYIFDRFYRVE 416 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 S+ + GTGLGLP+AK +V+ G+ +FS GT EI F Sbjct: 417 KSRSRQYGGTGLGLPIAKKLVELQGGELKVFSKLGHGTRFEIRF 460 >gi|153869800|ref|ZP_01999325.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152073728|gb|EDN70669.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 652 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 118/225 (52%), Gaps = 5/225 (2%) Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 S FLA +SHE+RTPL AIIG+SE++ + +I + I +GN +L ++ND+L Sbjct: 142 SQFLANMSHELRTPLNAIIGYSEMLAEEAEDLE-QEEFIPDLHKIKTAGNHLLGLINDVL 200 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705 D+SKIE+GKM L EP+ L+ + E IS Q +K + + I D+ ++ Sbjct: 201 DLSKIEAGKMELLIEPIDLNILMDEVISTTQPLIEKKANNFDIKRSQQLGEIQTDITKLR 260 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIP 764 Q+ LN++SNA FT G IS S ++I V D G+GMT + K +PF Q Sbjct: 261 QMLLNLISNAAKFTEKG---TISLNIQSEADLIKFCVTDNGIGMTEEQQAKLFQPFTQAD 317 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 S R GTGLGL + K + G + + KG+ I P Sbjct: 318 ASTTRRFGGTGLGLTITKQFAEMMGGSISVTTEFGKGSTFSISLP 362 >gi|39934324|ref|NP_946600.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] gi|39648172|emb|CAE26692.1| sensor histidine kinase with a response regulator receiver domain [Rhodopseudomonas palustris CGA009] Length = 1122 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 98/343 (28%), Positives = 168/343 (48%), Gaps = 24/343 (6%) Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 +F V I F ++L+ T + E ++L + L K+ T ++S Sbjct: 572 VFAVSVGLIGLSLFLIYLQVATAN-------EAQQIELAEILWKLFFALTIIVGVVSWLF 624 Query: 544 IIKKLPFSSCYS-------LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 ++ +L + + L M +I +Q +L AK+ AE + KS ++ +SHE+ Sbjct: 625 VLARLSRQAAEAETRRQTQLLMQEIDAHRQTDAELQRAKEAAESANLAKSRYVVGLSHEL 684 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 R+PL AI G++++++ P PR + + RS + + +++ LLDISKIE+G++ Sbjct: 685 RSPLNAISGYAQLLEQDNTLP---PRPRDQIRLMRRSADHLSGLIDGLLDISKIEAGRLY 741 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNA 715 L + V E + + + + +L A K I + P + AD + ++Q+ +N+LSNA Sbjct: 742 LSRDEVRFGEFLDQLVGMFRLQAAAKDIEFVFKRPQYLPPMVYADEKRLRQVLINLLSNA 801 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF--GQIPNSQQIRGEG 773 I FT G I H N L VRDTG G+ +LE+ PF G + +Q G Sbjct: 802 IKFTQEGSVHFI--VHYRNPVAELEVRDTGPGIHTDDLERIFAPFERGALGAAQP--HSG 857 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 TGLGL ++K + G + STP KG+ + L + ++P Sbjct: 858 TGLGLTISKLLAGVMGGDLTVTSTPDKGSTFRVKLLLSEVTNP 900 >gi|37681007|ref|NP_935616.1| hybrid sensory histidine kinase BarA [Vibrio vulnificus YJ016] gi|37199757|dbj|BAC95587.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] Length = 928 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 139/252 (55%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQ-TDYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L+I+ND+LD SK+E+GK+ L P E++ E ISL A+EK + I Sbjct: 331 TIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVISLQATSAHEKGLEITL 390 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDT 744 IP ++ D ++Q+ N++ N+I FT G + + S + + L+ V+DT Sbjct: 391 KIDPRIPEGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRAQSGDSLDLQFMVKDT 450 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTF 510 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 511 WFTLRLHSTQMP 522 >gi|317471314|ref|ZP_07930673.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA] gi|316901207|gb|EFV23162.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA] Length = 843 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 85/263 (32%), Positives = 137/263 (52%), Gaps = 18/263 (6%) Query: 556 LTMHDISEW----KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 L D++E +Q K +L HA AE+ + KSDFL+ +SH+IRTP+ AI+G + + Sbjct: 414 LVRADVTEMLTAERQAKKRLEHALASAEEANKAKSDFLSAMSHDIRTPMNAIMGMT-TLA 472 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + G + R Y + I+ S +L ++ND+LD+SKIE ++ L+ VS+ + + + Sbjct: 473 SAYLGD--DERVAGYLDKIEVSSRHLLSLINDILDMSKIERAQITLNLSKVSIPKLLDQL 530 Query: 672 ISLVQLYANEKRIL--IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 ++ A E + IR N+ D + QI +N+LSNA+ FT GG + + Sbjct: 531 SVMILSQAEEAGLTLSIRAEGVNH-EDFYGDPLRINQILINLLSNAVKFTNKGGMVELLA 589 Query: 730 THTSNEEVILR------VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 E R VRDTG+GM + K +PF + N+ I EGTGLGL + K Sbjct: 590 EEVETEGSAGRVSYHFTVRDTGIGMPEEFVSKIFEPFSRSGNAAHI--EGTGLGLSITKG 647 Query: 784 MVDANMGKFYIFSTPAKGTLIEI 806 ++D GK + S +G++ + Sbjct: 648 LIDLMGGKISVESWINEGSVFRV 670 >gi|219847925|ref|YP_002462358.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219542184|gb|ACL23922.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 747 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 82/256 (32%), Positives = 140/256 (54%), Gaps = 12/256 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ KQ + L A++ AE + KS FLA VSHE+RTPL A++GF++++ N Sbjct: 258 DITARKQAEVALRIARQQAEAANRAKSAFLANVSHELRTPLHAVLGFAQLLANDNN---L 314 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P EY I+RSG +L ++N++LD++KIE+G+ + P+++ + + + L + A Sbjct: 315 TPTQQEYLAIINRSGEHLLRLINEVLDLAKIEAGRYTYNAAPLNVRQLIEDVQLLFRNRA 374 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 K++ + + A N+P I++D ++QI +N+LSNAI FT G H EE Sbjct: 375 EAKQLHLNVTCAGNVPTLIISDEAKLRQILINLLSNAIKFTDVGS----VHLHVIREEQR 430 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIF 795 ++ V DTG+G+ + +K +PF Q + + G GLGL ++ + G ++ Sbjct: 431 LLFTVEDTGIGIPPLDQQKLFRPFFQGQQTGEYNSSVGVGLGLSISYELARLIGGDLSVY 490 Query: 796 STP-AKGTLIEIIFPL 810 S G+ ++ PL Sbjct: 491 SEGRGCGSRFTLVIPL 506 >gi|220910721|ref|YP_002486031.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219867493|gb|ACL47830.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 766 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 109/392 (27%), Positives = 189/392 (48%), Gaps = 40/392 (10%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIIN--------REGIILSTNRAVSKLFGYPVEDILR 494 ++++ EI + Q I+ T+DGI +I+ + +L N+++ ++ G+PV I+ Sbjct: 215 DRKRAEIALRQYERIVANTTDGIILIDTQFRYQIANQTYLLWYNKSIFEIIGFPVSKIIG 274 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG----STKEEKLLSLRIIIKKLPF 550 + VF P ++ E +++ R+ E TLG S L + I + Sbjct: 275 QD--VFETNFRPYLVRCLAGE--TIESREWFEIPTLGRQFFSVTYSPYLDENLAIAGIVA 330 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 S + +I+ K + +L AK+ AEK S KS FLA +SHE+RTPL I+ I Sbjct: 331 S------LRNITSLKLAEQELEKAKEEAEKASQAKSLFLANMSHELRTPLNVIL-----I 379 Query: 611 KNQRFGPLGN--PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 Q N P Y EY + I R+ + +L ++ND+LD+ K+E+ K +L +L E + Sbjct: 380 MTQMMNRTANKIPEYQEYIDLISRNSDHLLKMINDVLDLFKVEAEKASLENSETNLFELL 439 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII 727 + +K I I +PR IL D++ ++Q+ +N++ NA+ FT G + Sbjct: 440 QSIYVTFKQQCTDKHIQINLEIDEKVPRLILVDVQKLQQVLINLIGNAVKFTEHGEITVR 499 Query: 728 STTHTSNEE---------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 T + ++ + V DTGVG+ E+ + F Q +Q+ G GTGLGL Sbjct: 500 VTVELTQDKTKWQDASIPLAFTVEDTGVGIAPEEMNQIFDAFAQAAAGRQMTG-GTGLGL 558 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +++ +V G+ + ST G+ + P+ Sbjct: 559 SISQGLVQLMGGEITVKSTLGVGSTFHFVLPV 590 >gi|218439787|ref|YP_002378116.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218172515|gb|ACK71248.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 936 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 134/241 (55%), Gaps = 19/241 (7%) Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 + ++ES KS FLA V HE+RTPL A+ G + ++ + + L N + E+ N I SG Sbjct: 265 LLQQESLAKSQFLAMVGHELRTPLNAVTGMTGLLLDTK---LTNQQR-EFINIIRNSGET 320 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 +L ++N++LD +KIE+ K+ L P L +++ EA+ L A+E+++ + + P Sbjct: 321 LLTMINNILDFAKIEANKLELEETPFELGQSIEEALHLFVPQASERKLELAYLIEPHTPN 380 Query: 697 -ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNE-------------EVILRV 741 I+ D+ +KQI +N+LSNA+ FT SG ++ ++ T + E+ V Sbjct: 381 AIIGDVTRLKQILVNLLSNAVKFTESGEVVVYVNATPVTQHPVTPQKDKSSPLYEIRFAV 440 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +D+G+G+ ++++ K F Q+ S + GTGLGL ++K + + GK + S KG Sbjct: 441 KDSGIGIPREKMDRLFKSFSQVDASTSRKYGGTGLGLAISKRLTEMMGGKMWFHSVEGKG 500 Query: 802 T 802 + Sbjct: 501 S 501 >gi|319407902|emb|CBI81556.1| sensor histidine kinase protein [Bartonella schoenbuchensis R1] Length = 817 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 100/394 (25%), Positives = 194/394 (49%), Gaps = 24/394 (6%) Query: 429 PQNGIEP--EDVDTRIN-KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 PQ G+ E++ +I+ +R+ + L+ S+G+ + +G + +N A+SKL+ Sbjct: 429 PQGGVTWFYENLTEKIDLERRYNTLIKIQGETLDKLSEGVVVFGTDGRLRLSNPALSKLW 488 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 P + + +E + + + + + + K G + S RI + Sbjct: 489 SLP--------YNLLVEGTHITQLQTHCSTLTVGQEWEQFTKFITGFADKRDAYSGRIDL 540 Query: 546 KK--------LPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 K +P + + LT ++++ L + E +++F+ VS+E+ Sbjct: 541 KNGTIIDYTLVPLPNGQTMLTFVNVTDSVHIARALQERNEALESADRLRNEFVQHVSYEL 600 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPLT I+GFS+++++Q FG + N R EY +I N +L+IVND+LD++ +++G M Sbjct: 601 RTPLTNIVGFSDILRDQIFGSI-NERQHEYLGHIQSESNALLNIVNDILDLATLDAGIME 659 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716 L +PV++ +A+++A++ V+ + N + I + ++ ILAD + QI +NILSNA+ Sbjct: 660 LDIKPVNIADAMAQAVARVEEHLNGRYITFSQQISPSLNFILADATRLHQIFVNILSNAV 719 Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 +F I + + ++ V + G + L++ K F P+ G G GL Sbjct: 720 NFATEESTIEFC-ANKQGDNIVFSVHNEGSDIPTDILDRIFKRFSSRPHHGGRAGAGLGL 778 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 L K+ V+ + G I + +GT ++ FP+ Sbjct: 779 S--LVKSFVELHGGHVKILTGTGQGTTVKCFFPV 810 >gi|91974887|ref|YP_567546.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5] gi|91681343|gb|ABE37645.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB5] Length = 650 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 124/246 (50%), Gaps = 5/246 (2%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + +L + A+ + KS LA SHEIRTPL IIG S ++ + P Sbjct: 115 ESRGELLTLRDDADATTRAKSRLLAMASHEIRTPLNGIIGMSGLLLDTTL----TPEQAT 170 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y + SG+ +L ++++LLD SKI++GK+ L P +L + + L+ A + I Sbjct: 171 YVRAVKTSGDALLSLIDELLDYSKIDAGKIELDHRPFALAALIEDIAELLAPRAQARAIE 230 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 I +P +++ D ++Q+ LN+ NAI FT SGG +I+ + E+ L +RDT Sbjct: 231 IAAYVDERLPAQVIGDAARLRQVLLNLAGNAIKFTSSGGVALIAEPGERDGEIDLLIRDT 290 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + F Q + GTGLGL +++ +V G+ + S P GT Sbjct: 291 GIGIAPEAQARVFREFEQADDGIARNYGGTGLGLSISERIVSGMGGRIVLHSRPGIGTTF 350 Query: 805 EIIFPL 810 + PL Sbjct: 351 TVSIPL 356 >gi|126666595|ref|ZP_01737573.1| Signal transduction histidine kinase [Marinobacter sp. ELB17] gi|126628983|gb|EAZ99602.1| Signal transduction histidine kinase [Marinobacter sp. ELB17] Length = 947 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 75/265 (28%), Positives = 135/265 (50%), Gaps = 22/265 (8%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + K + + AE S KS+FLA +SHEIRTP+ A+IG+S+++ N + +P+ Sbjct: 577 ELRAAKIEAERLAREAEAASRTKSEFLANMSHEIRTPMNAVIGYSDLLSNT----VTDPQ 632 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y + I +L ++ND+LD+S+IE+GKM L + PVS+ + + + + L A ++ Sbjct: 633 QRNYLDAIRAGSRALLMLINDILDLSRIEAGKMRLDYAPVSMRRMLGDVLHIFDLRARDQ 692 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----- 736 + + S +P ++ D ++Q+ N+ NAI FT GG + + ++ Sbjct: 693 GVTLEVSVGKKMPAALMLDETRLRQVLFNLAGNAIKFTHEGGVTVRAKASPLPKQSYPPG 752 Query: 737 ------------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + + V DTG+G+ + E+ F Q R GTGLGL +++ + Sbjct: 753 TKPGEPEHPRYRLEITVTDTGIGIATDQQERVFDAFEQQEGQNSRRYGGTGLGLAISRKL 812 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809 G+ + ST +G++ ++I P Sbjct: 813 ALMMGGELTLKSTLDEGSVFKLILP 837 >gi|119483406|ref|ZP_01618820.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] gi|119458173|gb|EAW39295.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] Length = 1627 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 83/280 (29%), Positives = 149/280 (53%), Gaps = 45/280 (16%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q+ +L AK+ A+ + KS+FLA +SHE+RTPL AI+GF++++ N P + Y Sbjct: 1109 QQQAEELQLAKETADAANKAKSEFLANMSHELRTPLNAILGFTQLMHN---DPALSGEYQ 1165 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +Y + I ++G +L+++ND+L++SKIE+G++ L+ L ++ ++QL A K + Sbjct: 1166 QYIHIISQAGEYLLNLINDILEMSKIEAGQLTLNENCFDLHCLLNSLEEMLQLKAKLKGL 1225 Query: 685 LIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSG-------GQIIIS-------- 728 ++ N+P+ +A D + ++Q+ +N+L+NAI FT SG Q ++ Sbjct: 1226 QLQFDCDLNVPQFIATDDKKLRQVLINLLNNAIKFTESGYVTLRVFSQPLLKHGSFSGDN 1285 Query: 729 ----------------------TTHTSNEEVI---LRVRDTGVGMTNYELEKAMKPFGQI 763 T H ++ E+I V DTG+G+ +EL++ + F Q Sbjct: 1286 QSELVKQLTPILPASESLSEAPTNHPNHLELIPIYFEVEDTGLGIAPHELDRLFEAFSQT 1345 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 + EGTGLGLP+++ V G+ + S P G++ Sbjct: 1346 EAGFK-SSEGTGLGLPISQRFVQLMGGEIKVSSQPGVGSI 1384 >gi|300867975|ref|ZP_07112614.1| periplasmic sensor signal transduction histidine kinase [Oscillatoria sp. PCC 6506] gi|300333996|emb|CBN57792.1| periplasmic sensor signal transduction histidine kinase [Oscillatoria sp. PCC 6506] Length = 574 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 85/271 (31%), Positives = 134/271 (49%), Gaps = 27/271 (9%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + E+ +E L AK AE + KS FLA +SHE+RTPL AII +SE+++ G Sbjct: 304 VGEYTEE---LQEAKIAAEAANRSKSAFLANMSHELRTPLNAIINYSEMLQEDAQDE-GY 359 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 ++ I +G +LD+++D+LDISKIE+G + L+ E + + E ++ Q Sbjct: 360 EDFLPDLERIQTAGKHLLDMISDILDISKIEAGHVTLYLENFDIANMIEEVVTTAQPLVE 419 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---- 736 +K + ++ + AD V+QI LN+LSNA FT G I +S N++ Sbjct: 420 KKGNTLAMQINGDVGTMYADQPKVRQILLNLLSNAAKFTEK-GVITLSIERIKNDKFKSK 478 Query: 737 ------------------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 +I RV DTG+GMT +L+ KPF Q S + GTGLGL Sbjct: 479 NKKYKQEYPPALNSNSQVLIFRVSDTGIGMTEEQLQHIFKPFTQADASTTRKYGGTGLGL 538 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +++ + G+ + S +G+ + P Sbjct: 539 TISQRLCQILGGEIAVESEVERGSTFTVRLP 569 >gi|167623839|ref|YP_001674133.1| histidine kinase [Shewanella halifaxensis HAW-EB4] gi|167353861|gb|ABZ76474.1| histidine kinase [Shewanella halifaxensis HAW-EB4] Length = 818 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 133/238 (55%), Gaps = 12/238 (5%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A++ E+ +S KS FLA +SHEIRTPL IIG +E++ + + + +Y I Sbjct: 317 LIFAREKEEQANSAKSSFLANMSHEIRTPLNGIIGMTEILTDSKLTAIQK----DYLATI 372 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + S +L ++ND+LD+SKIESG + + ++ E + + ++L+ A ++ I +R + Sbjct: 373 NSSSQTLLMLINDILDLSKIESGHLEICPHTCNIKEVIYDTVALIAPKAQQRSIEMRITI 432 Query: 691 ANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHTSNEEVILRVRDT 744 NIP + AD + ++Q+ +N+ SNA+ FT SG Q+ + TT T ++ V+DT Sbjct: 433 DQNIPCYVRADEQKLRQVLMNLASNAVKFTHSGSVSFKLQLEVETTDTIC--ILFSVKDT 490 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G+ + + + F Q + + GTGLGL ++ +V G+ I S+ G+ Sbjct: 491 GIGIDENKHMQVFEEFQQEERNTSVEYGGTGLGLSISTKLVRMMGGEIAINSSKGLGS 548 >gi|167629981|ref|YP_001680480.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] gi|167592721|gb|ABZ84469.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] Length = 703 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 109/387 (28%), Positives = 174/387 (44%), Gaps = 48/387 (12%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 + E SD I+ E IIL + A L GY E+IL + FL P M+ Sbjct: 173 LAEYASDLISRHTTENIILYASPASRSLLGYEPEEILGRSGYEFLH---PKDMDR----- 224 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKK---LPFSSCYS--------------LTMH 559 + +LR+ + ++ E +L R+ K + F S Sbjct: 225 VGDNLREAIARL------EPRLFQYRMRRKDGRYVWFESTVRPVQNMETGKVQEVVFVTR 278 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K+ + +L AK+ AE KS FLA VSHEIRTPL IIG +++ + Sbjct: 279 DITERKRAEEELHMAKERAEAADRAKSAFLATVSHEIRTPLHGIIGMIDLLLDTAL---- 334 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 Y I L+ I+ND+LD SK+E+G++ L L V++ ++L+++ + Sbjct: 335 TEEQASYGRTIGELSRLLSSIINDILDFSKMEAGRIELEVVDYELRAVVNDVVNLLRVRS 394 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 +K + I +P L D ++Q+ +N+ NA+ FT G++ + S E Sbjct: 395 EQKNLDITCDIDREVPPFLRGDPIRLRQVLINLGGNAVKFTEK-GKVALRIAMDSRAEQS 453 Query: 737 ---------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + + DTG+G+T+ + +PF Q S R GTGLGL ++K +V+ Sbjct: 454 DPVNEVARFLRFEICDTGIGITDEVAPRLFQPFSQADMSTARRYGGTGLGLAISKRLVEL 513 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTS 814 G+ S P GT PL ++S Sbjct: 514 MGGEIGFRSIPGLGTTFWFTMPLLESS 540 >gi|312891906|ref|ZP_07751410.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311295639|gb|EFQ72804.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1082 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 95/355 (26%), Positives = 178/355 (50%), Gaps = 16/355 (4%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++LE + ++++G I+ N+ ++ + GY D++ + + P+ + + Sbjct: 584 NVLETVNLAAVTLDKQGDIVFCNKHLADIIGYDKVDLIGMNWA---DNFVPAKLQDQFRQ 640 Query: 516 ILSLD--LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKL 571 L D Q I + K+ +++S + + F T DI++ K+ + L Sbjct: 641 WLDSDSFYAQHTSPIICRNGKQ-RIISWKNTVTHDEFGKIVETTSIGEDITDIKKAREAL 699 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 AK+ AEK S KS+FL+ +SHEIRTP+ A+IG + ++ PR +EY N + Sbjct: 700 IIAKENAEKSSRFKSEFLSIMSHEIRTPMNAVIGTTNLLLQDN----PAPRQLEYLNTLR 755 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 S N +L+++ND+LD +KIE+GK+ L+ P ++++ + + A + Sbjct: 756 FSSNNLLELINDILDYNKIEAGKLELYKTPFNINKLAQNILQSFKNKAEANSSYLELKLD 815 Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVG 747 + IP ++ D + Q+ N+LSNA+ FT G + + ++V ++ + DTG+G Sbjct: 816 DRIPANLIGDQLRLGQVLNNLLSNAVKFTRDGTVFLKLELEQLRYDKVTIKFIIEDTGIG 875 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 ++ ++K PF Q NS Q GTGLGL + K +++ + + S +GT Sbjct: 876 ISPENIDKIFDPFTQEYNSTQSDYGGTGLGLAITKRLIELHNSTIKLVSNIGEGT 930 >gi|120553191|ref|YP_957542.1| PAS/PAC sensor signal transduction histidine kinase [Marinobacter aquaeolei VT8] gi|120323040|gb|ABM17355.1| PAS/PAC sensor signal transduction histidine kinase [Marinobacter aquaeolei VT8] Length = 484 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 97/358 (27%), Positives = 173/358 (48%), Gaps = 7/358 (1%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-EQNTPSVMNH--- 511 +LE+ D I I+ + G I+ N LFGY ++++ + + + E+ + H Sbjct: 128 GLLESAPDAIVIVKQGGRIVLVNSQAESLFGYHRDEMIGQNVEILMPERYRGQHIGHRDG 187 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 + + + LE L E + + + + S + DI+E K+ + L Sbjct: 188 FFKDPRVRPMGMGLELFGLRKGGIEFPIEISLSPLETEEGILVSSAIRDITERKRFERAL 247 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 + + K FLA +SHE+RTPL AIIGF+ + GPL + + + + Sbjct: 248 QDKNQELATANKAKDQFLASMSHELRTPLNAIIGFTGTLLMGLPGPLNDDQKKQLGT-VR 306 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 S +L ++NDLLD++KI++GK+ L E ++L++ + E L A EK + + Sbjct: 307 SSAQHLLSLINDLLDVAKIDAGKLELKPENINLNQLLEEIHGTFSLQAREKALELGLQLP 366 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 + + D R++ QI +N++SN + FT GG + ++ + + V + VRDTG G+ Sbjct: 367 DQPVNLETDRRALSQIVMNLISNGLKFTHEGG-VYVTLVRPNPQSVHVCVRDTGPGIDTS 425 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 E +PF + S + R EGTGLGL L++ + + G + + A G+ + P Sbjct: 426 AQENLFQPFSRGVLSSR-RTEGTGLGLYLSQKLANQLGGNIQLQRSDASGSEFLLSLP 482 >gi|313149253|ref|ZP_07811446.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313138020|gb|EFR55380.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 525 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 138/255 (54%), Gaps = 19/255 (7%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K+ + +L A+ AE+ KS FLA +SHEIRTPL AI+GFS++I Sbjct: 284 DVTETKKTEKELIAARIKAEEADRMKSSFLANMSHEIRTPLNAIVGFSKLIIE------A 337 Query: 620 NPRY--IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + Y +YA+ ++ + +++L++ ND+LD+S +E+G + L + PV L + + L +L Sbjct: 338 DDEYEKRQYADIVEHNSSVLLNLFNDILDLSALEAGSLELSYHPVKLKDI---CLQLHEL 394 Query: 678 YANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 Y + +R P+ I D + QI +N+++NAI FT S G+I ++ Sbjct: 395 YVKSVKPEVRLMLDEVDPQLCIQGDWERISQILVNLITNAIKFT-SAGEIHFGFQEKAD- 452 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V V DTG G+ + + FG+I + Q GTGLGL + + +V+ G+ ++ Sbjct: 453 MVQFYVSDTGKGIPAERVATIFQRFGKIDDFVQ----GTGLGLTICRMLVEKMGGRIWVR 508 Query: 796 STPAKGTLIEIIFPL 810 S KGT+ P+ Sbjct: 509 SKQGKGTVFYFTLPV 523 >gi|307823560|ref|ZP_07653789.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307735545|gb|EFO06393.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 966 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 14/244 (5%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++L+ A+ A KS+FL+ +SHEIRTP+ AIIG + + + +Y Sbjct: 286 SELAEARDQAIAADKSKSEFLSMMSHEIRTPMNAIIGMTRLALQTDL----TAKQQDYLT 341 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + S +L I+ND+LD SKIE+GK+ L +LD+ +++ SL+ A EK + IR Sbjct: 342 KVQISSRALLGIINDILDFSKIEAGKLELETIAFNLDDVLNDLFSLMSGKAEEKGLKIRF 401 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI--------- 738 A+++P ++ D + Q+ LN+++NA+ FT GG + I E + Sbjct: 402 ITADDVPSDLIGDPLRLGQVLLNLVNNAVKFTSRGGDVDIKVALAEGAEQVKSADQIRLE 461 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V+DTG+G+T ++ + F Q S + GTGLGL + K MVD G + S Sbjct: 462 FSVKDTGIGLTTEQIGGLFQSFNQADKSTTRKYGGTGLGLAICKRMVDMMGGVITVNSEI 521 Query: 799 AKGT 802 +G+ Sbjct: 522 GQGS 525 >gi|282898666|ref|ZP_06306654.1| Histidine kinase, HAMP region protein [Cylindrospermopsis raciborskii CS-505] gi|281196534|gb|EFA71443.1| Histidine kinase, HAMP region protein [Cylindrospermopsis raciborskii CS-505] Length = 644 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 83/258 (32%), Positives = 138/258 (53%), Gaps = 10/258 (3%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + W +E L A K A+ ++ KS FLA SHE+R PL II ++++ Sbjct: 388 LKAWTEE---LEMAWKEAKSANTVKSQFLANTSHELRNPLNIIINCVRLVRDGLCDD--K 442 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 +E+ D + +L I+NDLLDISKIE+GK+++ P+ L + + E I+L + Sbjct: 443 EEELEFLKKADDTAIHLLGIINDLLDISKIEAGKLSVVMIPLELRQLLLEVINLQSVNVQ 502 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST---THTSNEEV 737 +K + ++ + + I D +KQ+ +N++ NA FT G I IST S V Sbjct: 503 KKGLQLKCEISEQVIPIKGDRIKLKQVLINVIGNATKFTEEGS-ITISTKVIKQHSKLYV 561 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 ++ V DTG+G+ + +K +PF + + + EGTGLGL +++ +++ GK + S Sbjct: 562 VISVVDTGIGIDPQQQQKLFRPFVMVDGTTTRKFEGTGLGLAISRNLIELMGGKITLESL 621 Query: 798 PA-KGTLIEIIFPLYDTS 814 +GT ++II PL D S Sbjct: 622 GLNRGTTVKIILPLIDIS 639 >gi|255011436|ref|ZP_05283562.1| two-component sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 522 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 138/255 (54%), Gaps = 19/255 (7%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K+ + +L A+ AE+ KS FLA +SHEIRTPL AI+GFS++I Sbjct: 281 DVTETKKTEKELIAARIKAEEADRMKSSFLANMSHEIRTPLNAIVGFSKLIIE------A 334 Query: 620 NPRY--IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + Y +YA+ ++ + +++L++ ND+LD+S +E+G + L + PV L + + L +L Sbjct: 335 DDEYEKRQYADIVEHNSSVLLNLFNDILDLSALEAGSLELSYHPVKLKDI---CLQLHEL 391 Query: 678 YANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 Y + +R P+ I D + QI +N+++NAI FT S G+I ++ Sbjct: 392 YVKSVKPEVRLMLDEVDPQLCIQGDWERISQILVNLITNAIKFT-SAGEIHFGFQEKAD- 449 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V V DTG G+ + + FG+I + Q GTGLGL + + +V+ G+ ++ Sbjct: 450 MVQFYVSDTGKGIPAERVATIFQRFGKIDDFVQ----GTGLGLTICRMLVEKMGGRIWVR 505 Query: 796 STPAKGTLIEIIFPL 810 S KGT+ P+ Sbjct: 506 SKQGKGTVFYFTLPV 520 >gi|187922203|ref|YP_001893845.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] gi|187713397|gb|ACD14621.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] Length = 657 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 79/258 (30%), Positives = 135/258 (52%), Gaps = 6/258 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI+ K+ + L AK AE+ KS+FL+ +SHE+RTPL AI+GF+++++ Sbjct: 250 TILDITRQKESEQALKLAKAEAERACHAKSEFLSSMSHELRTPLNAILGFAQILEMD--D 307 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L + A + ++G+ +L ++N++LD++ IESGK L E V + + + LVQ Sbjct: 308 GLSTDQLDSIAEIL-KAGHHLLGLINEVLDLASIESGKTTLSLETVDVSTLIRDCAQLVQ 366 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A + I + AD + +KQI LN+LSN I + G++ + Sbjct: 367 PLATSREIDLHLEIPERAA-ACADNQRLKQIVLNLLSNGIKYNHPSGEVRV-IVEPDGSR 424 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + V DTG G+ L + +PF ++ + EGTG+GL + + + +A G+ + S Sbjct: 425 LRIAVADTGAGICAERLGELFQPFSRL-GADHASVEGTGIGLVITRKLTEAMGGRIGVES 483 Query: 797 TPAKGTLIEIIFPLYDTS 814 P KG+ + PL S Sbjct: 484 EPGKGSRFWVELPLAQLS 501 >gi|296423107|ref|XP_002841097.1| hypothetical protein [Tuber melanosporum Mel28] gi|295637330|emb|CAZ85288.1| unnamed protein product [Tuber melanosporum] Length = 1260 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 84/253 (33%), Positives = 136/253 (53%), Gaps = 30/253 (11%) Query: 563 EWKQEKNKLSHAKKIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E ++ +N++ A + A KE+S KS+FLA +SHEIRTP+T ++G +E++ + PL Sbjct: 713 EARERENQVLVANESAAKEASKLKSEFLASMSHEIRTPITGVVGMAEILLDT---PLEEE 769 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + E+A I RS N +L ++ND+LDISK+ESG++++ D V Sbjct: 770 QR-EFAENIQRSANALLTVINDILDISKVESGRLDIE----EFDHTVD------------ 812 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR- 740 + F N+ ++ D V+QI N+L+N+I FT G + +E+VI+ Sbjct: 813 -----FSEFGGNM-TVIGDPGRVRQILTNLLTNSIKFTHEGFVKLAVGVEKEDEDVIVVK 866 Query: 741 --VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V+D+G+G+ +K +PF Q +S R GTGLGL ++K +VD G + S+ Sbjct: 867 FVVKDSGIGIDEDVQQKLFQPFTQADSSTARRFGGTGLGLTISKNLVDLMGGSIGLASSL 926 Query: 799 AKGTLIEIIFPLY 811 GT I P + Sbjct: 927 GAGTTAHFIIPFH 939 >gi|254429940|ref|ZP_05043647.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] gi|196196109|gb|EDX91068.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] Length = 846 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 125/229 (54%), Gaps = 8/229 (3%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A ES K FLAR+SHEIRTPL +IG +E+++ P +PR EY + ID +G + Sbjct: 342 ARAESQAKGLFLARMSHEIRTPLNGVIGLAELLRET--DP--SPRQQEYISLIDSAGRTL 397 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696 ++ND+LD +KIE+GK+ L E L ++E + + L A++ L+ + P Sbjct: 398 TALINDVLDFAKIEAGKLELVEERFDLPTLLAECVQMFNLPASDNGTLVILDVDPHTPSD 457 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---RVRDTGVGMTNYEL 753 ++ D ++QI +N++ NA+ FT +G ++ EV L V DTG+G+T E Sbjct: 458 VVGDAIRLRQILINLIGNAVKFTRNGRVVLSLVCRRHGGEVPLFTFAVTDTGIGLTQDEQ 517 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + + F Q + R GTGLGL +++ +V G+ ++ S P G+ Sbjct: 518 TQLFQRFTQASANTARRYGGTGLGLSISRELVGLMGGEIHVHSAPGLGS 566 >gi|254413254|ref|ZP_05027025.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196179874|gb|EDX74867.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1658 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 79/248 (31%), Positives = 138/248 (55%), Gaps = 9/248 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K + L AK+ A+ + KS FLA +SHE+R+PL AI+GF++++ N P Sbjct: 1165 DITERKLAEIALQEAKEAADAANRAKSTFLANMSHELRSPLNAILGFAQLMSNSVTLP-- 1222 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +Y + I SG +L ++N +LD+SKIE+G++ L+ +L + E + +L Sbjct: 1223 -QQYQDNLRIIHHSGEHLLTLINQVLDLSKIEAGRITLNETTFNLHHLLGEVEDMFRLKV 1281 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 NEK + +R ++A ++P I D ++Q+ +N++SNA+ FT +G ++ +N++ Sbjct: 1282 NEKGLQLRFNWAADVPATIQTDEIKLRQVLINLVSNAVKFTSAGSVVMNVAQQRTNDDGR 1341 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + ++DTG G+ ELE + F S GTGLGLP+ + + G+ + Sbjct: 1342 MTLYFEIKDTGCGIAADELESIFEAF-VQSQSGVQSQSGTGLGLPITRKFIQLMGGEIRV 1400 Query: 795 FSTPAKGT 802 S ++GT Sbjct: 1401 ESQVSQGT 1408 >gi|222054940|ref|YP_002537302.1| GAF sensor hybrid histidine kinase [Geobacter sp. FRC-32] gi|221564229|gb|ACM20201.1| GAF sensor hybrid histidine kinase [Geobacter sp. FRC-32] Length = 1215 Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 137/239 (57%), Gaps = 8/239 (3%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ S++KS+FLA +SHE+RTPL +++ S ++ + + G L + + + +A ++ +GN +L Sbjct: 534 ERISAYKSEFLANMSHELRTPLNSLMILSHLLMDNKEGNL-SEKQVGFARTMNDAGNDLL 592 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++ND+LD+SK+E+G++ HFE + + + + ++ + A +K + + +P + Sbjct: 593 NLINDILDLSKVEAGRLEFHFEELKVIDLLEPLETMFRPLAEQKGLAFQIKTGAGVPECI 652 Query: 699 A-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI------LRVRDTGVGMTNY 751 + D++ +QI N+LSNA FT +GG +++ E ++ + +RD+G+G++ Sbjct: 653 STDMQRTQQILKNLLSNAFKFTHNGGVEVLAGIPAPGENILPVPALAIAIRDSGIGISAE 712 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + E F Q S + GTGLGL +++ + G + S +G++ + PL Sbjct: 713 KQEIVFNAFQQGDGSTSRKFGGTGLGLSISRQLARGMQGDITLASREGEGSVFTVYLPL 771 >gi|254429345|ref|ZP_05043052.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] gi|196195514|gb|EDX90473.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] Length = 771 Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A K S KS+FLA +SHEIRTPL I+GF++++ P+ PR +Y + Sbjct: 270 ELDMARKEALKASHIKSEFLANMSHEIRTPLNGILGFTKLLDR---SPM-TPRQEDYLST 325 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I +S +L I+ND+LD SKIE+GK++L P++L + + + +L+ A E+ + Sbjct: 326 IHKSAESLLAIINDVLDFSKIEAGKLSLDHTPLNLHDLIEDVQTLLAPMAQERGLEQAAI 385 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVILR--VRDTG 745 +++P +L D ++Q+ N++SNAI FT G ++ + E I++ V DTG Sbjct: 386 IYSDVPVALLGDPLRIRQVLTNLVSNAIKFTDQGSVVVRAMLEEDRGAEAIIKITVTDTG 445 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+ + F Q S + + GTGLGL ++K +V+ G+ I S +G+ Sbjct: 446 PGLNPEAQKDLFSAFTQADQSARRQEGGTGLGLAISKRLVEGMGGEIGIDSREGRGS 502 >gi|219667341|ref|YP_002457776.1| histidine kinase [Desulfitobacterium hafniense DCB-2] gi|219537601|gb|ACL19340.1| histidine kinase [Desulfitobacterium hafniense DCB-2] Length = 560 Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 133/229 (58%), Gaps = 3/229 (1%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 +++KS+FLA +SHE+RTPLT+++ F++++ L R + YI + +L ++ Sbjct: 320 NTYKSEFLAIMSHELRTPLTSVMAFTDLLLQDLPKELKQER--QNLKYIKANSQNLLKLI 377 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 N++LD++KIE+G++ L E V + + + S++ A +K I S + + AD Sbjct: 378 NNILDLAKIEAGRLELKLEYVDMADVMGAIDSVIAPLAKKKGITWEISLDPEVSLLRADP 437 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPF 760 ++++ N++ NAI FTP+ G++ I + + +++RV DTG+G+ E E+ + F Sbjct: 438 EKLRRVIENLVGNAIKFTPAEGRVEIEVKNGPRDNWLMIRVIDTGIGIPPEEQEEIFERF 497 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 QI +S + GTGLGL LAK +V + G+ ++ S KG+ ++ P Sbjct: 498 TQIDSSNSRKYGGTGLGLALAKELVSLHKGELWVESELNKGSTFVVLLP 546 >gi|325106899|ref|YP_004267967.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324967167|gb|ADY57945.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 929 Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 86/262 (32%), Positives = 138/262 (52%), Gaps = 10/262 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 HDI+ K + +L AK+ AE + KSDFLA +SHEIRTP+ AIIG SE++ + Sbjct: 250 HDITRQKNAEQELKAAKEAAESANRAKSDFLANMSHEIRTPMNAIIGMSELLLDSEL--- 306 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + Y + S +L I+N++LD SKIE+G + L +E + L + V E + + Sbjct: 307 -QHQQDVYVRTVLDSAESLLSIINEILDFSKIEAGHLELSWERIDLRDLVVETLRSLAAR 365 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTS 733 A+ K + + +IP+ ++ D ++QI +N++ NAI FT + G+I++ T Sbjct: 366 AHRKGLELAWRVDPSIPQVVMGDPVRIRQILMNLVGNAIKFTEA-GEIVVQVKSLEMSTD 424 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + E+ VRDTG+G+ L+K F Q S + GTGLGL +A + A G + Sbjct: 425 SVELHFEVRDTGIGIQQDRLQKIFDAFEQADASTTRQFGGTGLGLAIASRLASAMGGMIW 484 Query: 794 IFSTPAKGTLIEIIFPLYDTSH 815 S +G++ L +S Sbjct: 485 AESMLGQGSVFHFKIQLTSSSR 506 >gi|260843241|ref|YP_003221019.1| hybrid sensory histidine kinase TolS in two-component regulatory system with TorR [Escherichia coli O103:H2 str. 12009] gi|257758388|dbj|BAI29885.1| hybrid sensory histidine kinase TolS in two-component regulatory system with TorR [Escherichia coli O103:H2 str. 12009] Length = 914 Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 86/251 (34%), Positives = 136/251 (54%), Gaps = 19/251 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 432 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 487 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 488 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 544 Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT GQI++ + T E+ ++ V D+G Sbjct: 545 TAIADDVPSALMGDPRRIRQVITNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGC 602 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 603 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 658 Query: 807 IFPLYDTSHPH 817 PL + P Sbjct: 659 RLPLRVATAPE 669 >gi|172036328|ref|YP_001802829.1| sensory transduction histidine kinase [Cyanothece sp. ATCC 51142] gi|171697782|gb|ACB50763.1| probable sensory transduction histidine kinase [Cyanothece sp. ATCC 51142] Length = 1317 Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 99/389 (25%), Positives = 192/389 (49%), Gaps = 41/389 (10%) Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 T+ ++ + L +I++ DG+ + + G I N ++ +F + + ++ + Sbjct: 948 TQEQSETLQTTLADLNAIVDNLGDGLLVADIYGRITRYNPSLVSMFNVTLPLLGKQLLDI 1007 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLE-KITLGSTKEEKLLSLRIIIKKLPFSSCY---S 555 F E+ +P L E LD ++ + +I L + + + L+ II +++ Y Sbjct: 1008 FPEELSP------LLERKKLDQKKVVAVEIPLSNNRIGQALASNIIKEQVESGEEYLGVV 1061 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + DI++ ++E ++ K +FL+ VSHE+RTPLT+I+GFS +I++ + Sbjct: 1062 ILIRDITK-EREMERM-------------KRNFLSMVSHELRTPLTSIVGFSSLIRD-KL 1106 Query: 616 GPLGNPRYIEYANYIDRSGNLV---LDIV-----------NDLLDISKIESGKMNLHFEP 661 + P+ E +D++ + LDIV ND LD++KIESGK+ L P Sbjct: 1107 HAVVFPQIQEKDKKVDKAVERIKQNLDIVVFEAERLTKLVNDFLDMTKIESGKITLSLFP 1166 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V ++ AI+ + + + F +P IL D + Q+ +N++SN FT + Sbjct: 1167 VKPSTVLTWAIASTAPLFEDSSVELIEDFPEELPTILGDEDRLIQVFVNLISNGFKFTET 1226 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 G + ++ +++ + DTG+G+ + K +PF Q+ N + +GTGLGL ++ Sbjct: 1227 GS--VTCHGEVDHDNLLISITDTGIGIAENDYSKVFEPFQQVGNILTNKPKGTGLGLSIS 1284 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 K +++ + GK + S KG+ + PL Sbjct: 1285 KQIIEQHGGKIWFTSERQKGSTFFVSLPL 1313 >gi|256419624|ref|YP_003120277.1| histidine kinase [Chitinophaga pinensis DSM 2588] gi|256034532|gb|ACU58076.1| histidine kinase [Chitinophaga pinensis DSM 2588] Length = 732 Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 76/258 (29%), Positives = 135/258 (52%), Gaps = 8/258 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 M I +Q +L ++K + + K +F+ +SHEIRTPL AI+GF+ ++K+++ Sbjct: 203 FVMSRIRRQQQLILELDRSEKKIREIAMIKENFMTNMSHEIRTPLNAILGFTNLLKSRKL 262 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + E+ I ++G +L I+ND+LD+SKIE+G + + P S+ + +L Sbjct: 263 ----DDSSTEFVGSIQKAGENLLTIINDILDLSKIEAGMVRIESNPFSVRGLLHSIQTLF 318 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 EK+++++ A+++P ++ D + Q+ +N++ NA+ FT GG +I + S+ Sbjct: 319 SEKVKEKKLVLQGEIASDVPDTLIGDATRLTQVLVNLIGNALKFTEKGGIVISVSNRQSD 378 Query: 735 EEVI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 +I + DTG+G+ +L F Q +S + GTGLGL + K +V G Sbjct: 379 GNIIQLAFAITDTGIGIEPDKLGSIFDRFNQAEDSITRKYGGTGLGLSIVKDLVILQGGD 438 Query: 792 FYIFSTPAKGTLIEIIFP 809 + S P KGT P Sbjct: 439 ISVESEPGKGTTFRFFIP 456 >gi|218532769|ref|YP_002423585.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218525072|gb|ACK85657.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 700 Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 98/368 (26%), Positives = 174/368 (47%), Gaps = 38/368 (10%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 ++EAT++ + + +G I + + L G KP + +P V+ +E Sbjct: 57 LVEATTEAVVQRDGQGRITFASAGFAALLGM-------KPLELIGSTLSPQVIERGASEQ 109 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIK-----KLPFSSC-----YSLTMHDISEWKQ 566 + +R EE+L+ + + + ++P S + D++ + Sbjct: 110 RADGVR----------VVEERLVPVDGLPRWFSFIEMPVSGSVDGPNWLRAGQDVTARVE 159 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 L AK AE + KS FLA VSHE+RTPL I+G ++++ + R +P Y Sbjct: 160 AARVLDEAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTRL----DPEQRTY 215 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 SG +L +V+ +LD S+IE+G+++L EP + V + L+ A +K + I Sbjct: 216 VEAFRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEI 275 Query: 687 RTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVR 742 A+++ + + D V+QI +N+ NAI FT +GG + +S + E+ ++L V Sbjct: 276 ALDIADDLAALRVGDADRVRQILVNLAGNAIKFTQTGG-VGVSLARSGEEQGEGLVLTVE 334 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG G+ + + F Q +S EGTGLGL + + +V+ G ST +G+ Sbjct: 335 DTGPGIPEERIPILFEEFEQGDDSAS--HEGTGLGLAITRRLVERMNGTIEARSTMGRGS 392 Query: 803 LIEIIFPL 810 ++ PL Sbjct: 393 TFRVMLPL 400 >gi|326623485|gb|EGE29830.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 936 Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 17/256 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L+ AKK AE+ + KS L +SHE+RTP+ ++G E+++ P IE Sbjct: 393 ERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQT-------TPLNIE 445 Query: 626 YANYIDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 D + N +L I+N+LLD S+IESG LH E +L + +A+ +Q A K Sbjct: 446 QQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSK 505 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ +RT ++P D ++QI +N+L NA+ FT +GG I T E++I V Sbjct: 506 KLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG--IRLTVKRHEEQLIFLV 563 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G G+ + + F Q + Q GTG+GL +A ++ G + S P G Sbjct: 564 SDSGKGIEIQQQSQIFTAFYQADTNSQ----GTGIGLTIASSLAKMMGGNLTLKSVPGVG 619 Query: 802 TLIEIIFPLYDTSHPH 817 T + ++ PL + P Sbjct: 620 TCVSLVLPLQEYQPPQ 635 >gi|323129664|gb|ADX17094.1| sensor kinase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 936 Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 17/256 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L+ AKK AE+ + KS L +SHE+RTP+ ++G E+++ P IE Sbjct: 393 ERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQT-------TPLNIE 445 Query: 626 YANYIDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 D + N +L I+N+LLD S+IESG LH E +L + +A+ +Q A K Sbjct: 446 QQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSK 505 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ +RT ++P D ++QI +N+L NA+ FT +GG I T E++I V Sbjct: 506 KLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG--IRLTVKRHEEQLIFLV 563 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G G+ + + F Q + Q GTG+GL +A ++ G + S P G Sbjct: 564 SDSGKGIEIQQQSQIFTAFYQADTNSQ----GTGIGLTIASSLAKMMGGNLTLKSVPGVG 619 Query: 802 TLIEIIFPLYDTSHPH 817 T + ++ PL + P Sbjct: 620 TCVSLVLPLQEYQPPQ 635 >gi|239904806|ref|YP_002951544.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239794669|dbj|BAH73658.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 972 Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 85/259 (32%), Positives = 139/259 (53%), Gaps = 15/259 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI + KQ + L +K+ AE + KS FLA +SHEIRTPL I+G +++K P Sbjct: 569 DIGQRKQAEEALRQSKEEAESANKAKSVFLANMSHEIRTPLNGILGMLQLLKTT--DP-- 624 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQ 676 N EY RS N + +++D+LD+S+IE+G+M + F+ + +++SE L Sbjct: 625 NDEQKEYLLGAIRSTNRLTRLLSDILDVSRIEAGRMQIVEAEFDIKMVRDSISE---LFD 681 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG----GQIIISTTH 731 + A K +L+ + +N+P R++ D ++QI N++ NAI FT G ++ Sbjct: 682 MEARGKGLLLEFRWNDNLPLRLIGDEVRLRQILFNLVGNAIKFTEKGTIRIDACLLPRAS 741 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 S+ V++ V DTG+G++ L+ +PF Q S R +G GLGL + + +V G Sbjct: 742 DSSVRVLVTVGDTGIGISEEHLKDIFEPFVQAEGSYTRRFQGAGLGLSIVRRLVKLLDGD 801 Query: 792 FYIFSTPAKGTLIEIIFPL 810 I STP +G+ + P Sbjct: 802 ISIDSTPGEGSTFYLSLPF 820 >gi|254423945|ref|ZP_05037663.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] gi|196191434|gb|EDX86398.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] Length = 935 Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 125/228 (54%), Gaps = 4/228 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +FL+ +SHE+RTPLT IIG S + FG L R Y I+RSG +L ++ND+ Sbjct: 572 KVEFLSTMSHELRTPLTYIIGMSATLLRWSFGELSE-RQRSYLETINRSGEHLLTVINDI 630 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA--NEKRILIRTSFANNIPRILADLR 702 L+ +K+ESG+ L+ L V + Q A ++ + + + + AD + Sbjct: 631 LEFAKVESGRSLLNVSNFPLSNLVRSVATRYQEDAKNHDVSLSVDCVLSPEVENFRADSK 690 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 ++QI N+++NAI FTP+GG+I + + ++L+V DTG+G+ + + + F Q Sbjct: 691 RIEQILSNLVNNAIKFTPAGGEITLRV-QKELDSILLQVEDTGIGIPESQQKFMFEKFKQ 749 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + Q + GTGLGL + K +V+ + G + ST KG+ + P+ Sbjct: 750 LESPFQRQYAGTGLGLAMTKHLVELHNGTIQVISTVGKGSTFIVSLPI 797 >gi|1498305|gb|AAC44299.1| SpiR [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 823 Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 17/256 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L+ AKK AE+ + KS L +SHE+RTP+ ++G E+++ P IE Sbjct: 377 ERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQT-------TPLNIE 429 Query: 626 YANYIDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 D + N +L I+N+LLD S+IESG LH E +L + +A+ +Q A K Sbjct: 430 QQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSK 489 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ +RT ++P D ++QI +N+L NA+ FT +GG I T E++I V Sbjct: 490 KLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG--IRLTVKRHEEQLIFLV 547 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G G+ + + F Q + Q GTG+GL +A ++ G + S P G Sbjct: 548 SDSGKGIEIQQQSQIFTAFYQADTNSQ----GTGIGLTIASSLAKMMGGNLTLKSVPGVG 603 Query: 802 TLIEIIFPLYDTSHPH 817 T + ++ PL + P Sbjct: 604 TCVSLVLPLQEYQPPQ 619 >gi|310827685|ref|YP_003960042.1| hypothetical protein ELI_2096 [Eubacterium limosum KIST612] gi|308739419|gb|ADO37079.1| hypothetical protein ELI_2096 [Eubacterium limosum KIST612] Length = 856 Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 84/254 (33%), Positives = 129/254 (50%), Gaps = 14/254 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q + L K+ AE+ S KSDFL+++SHEIRTP+ I+G +EV +R+ NP I Sbjct: 322 RQIQRLLMAEKEKAERASQAKSDFLSQMSHEIRTPMNGIVGMTEV--GRRYTH--NPARI 377 Query: 625 EYANYIDR---SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 E N +D+ S +L +VND+LD+SKIESGK+ LH E + ++ A E Sbjct: 378 E--NCLDKISLSTQHLLSLVNDILDMSKIESGKIELHEESFDFGQLFKALTTVFYTQARE 435 Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---- 736 + I + ++ D + QI N+LSNA+ FTP GG++ ++ E Sbjct: 436 RGIEYNVYVNGALEDELVGDALRLNQILTNLLSNAMKFTPKGGKVCMTAEEIRRGEDRFW 495 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + VRD+G G+ L + + F Q + + GTGLGLP+ K V+ G + S Sbjct: 496 IGFEVRDSGCGIAKENLGRIFEVFTQEDSGVARKYGGTGLGLPITKRFVEMMGGSISVES 555 Query: 797 TPAKGTLIEIIFPL 810 G+ + P Sbjct: 556 QVGSGSCFRVEIPF 569 >gi|298387810|ref|ZP_06997360.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298259415|gb|EFI02289.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 391 Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 87/265 (32%), Positives = 136/265 (51%), Gaps = 14/265 (5%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT+HDI++ K+ + +L+ AK+ AE KS FLA +SHEIRTPL AI GF+EV+ + Sbjct: 138 LTVHDITQLKETEKQLTLAKEKAENADLSKSAFLANMSHEIRTPLNAITGFAEVLASAN- 196 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 +Y I + +L+L +VND+LD+SKIE+G + + V ++ +S+ L Sbjct: 197 ---TEEEKAQYQEIIKMNADLLLQLVNDILDMSKIEAGTLEFVYTKVDINLLLSDLRQLF 253 Query: 676 QLYANEKRILIRTSFANNIP--RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 Q+ N+ IR ++P I D V Q+ N +NAI FT G IS + + Sbjct: 254 QMRVNDAGKNIRIIAEPSLPSCSIETDRNRVAQVLSNFTTNAIKFTQEG---TISIGYEA 310 Query: 734 NE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + E+ V DTG G+ +L + F ++ ++ GTGLGL ++K +V+ G+ Sbjct: 311 RDTELYFYVTDTGAGIPADKLPEVFGRFVKLNKDKK----GTGLGLSISKTIVNKLEGQI 366 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHPH 817 S KG+ P P Sbjct: 367 GADSVEGKGSTFWFTIPYRTCGRPE 391 >gi|261417268|ref|YP_003250951.1| multi-sensor hybrid histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373724|gb|ACX76469.1| multi-sensor hybrid histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327259|gb|ADL26460.1| sensor histidine kinase/response regulator [Fibrobacter succinogenes subsp. succinogenes S85] Length = 1329 Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 84/253 (33%), Positives = 133/253 (52%), Gaps = 15/253 (5%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y L+M DISE + A++IAE + KS+FLA +SHEIRTP+ AIIG + +I+ Sbjct: 561 YMLSMIDISE-------VVAAREIAEHATQAKSEFLANMSHEIRTPMNAIIGMAHLIQET 613 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + + R + + I + +L I+N++LD SKIE+ K +L + L + + E + Sbjct: 614 KL----DERQLGFIERISHAATSLLGIINNILDFSKIEANKQDLEITQLVLQDIIGEVAA 669 Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIIST 729 L ++ + I + IP +L D + QI N+++NA FT SG QI Sbjct: 670 LAEVRIAGRPIELIVDIDPEIPEVLMGDPLRLSQIFTNLINNATKFTESGSITLQIKQEQ 729 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 +N ++ V DTG+GMT +L F Q S + GTGLGL ++K++V+ Sbjct: 730 VIGNNIKLSFSVIDTGIGMTTDQLHHLFNAFTQADGSITRKYGGTGLGLVISKSLVELMG 789 Query: 790 GKFYIFSTPAKGT 802 G+ + S KG+ Sbjct: 790 GELQVESEYGKGS 802 >gi|254785971|ref|YP_003073400.1| periplasmic sensor hybrid histidine kinase [Teredinibacter turnerae T7901] gi|237685403|gb|ACR12667.1| periplasmic sensor hybrid histidine kinase [Teredinibacter turnerae T7901] Length = 620 Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 89/257 (34%), Positives = 144/257 (56%), Gaps = 16/257 (6%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLG 619 IS+ K +L+ AK+ AEK S KS+FLA +SHE+RTPL ++IG++ ++K+ + Sbjct: 362 ISDQKALNAELAIAKRHAEKALSIKSEFLANMSHELRTPLNSVIGYTVRLLKH-----VN 416 Query: 620 NPRYIEYANY--IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + R I+ I+R+G +L ++ND+LD+SKIE+ K++L PV L+E +A++ V Sbjct: 417 SDRAIQLKALEAIERNGRHLLAMINDILDLSKIEAQKLDLSIRPVDLNELCEQAVTQVGP 476 Query: 678 YANEKR---ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A EK + IR+ A + D + QI LN+LSNAI +T GG I S Sbjct: 477 AAEEKNLELVFIRSQTAT----VHTDFTRLSQILLNLLSNAIKYTNEGGIKIELERDISE 532 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKFY 793 + V LRV DTG+G+ ++ F Q +S + + G+G+GLGL + ++ + Sbjct: 533 KYVSLRVIDTGIGIEPENQKRLFLRFEQFDDSSRFQVGKGSGLGLAIVASLSKLLGVRVS 592 Query: 794 IFSTPAKGTLIEIIFPL 810 + S KG+ + P+ Sbjct: 593 VASDVGKGSTFSLRVPV 609 >gi|83815367|ref|YP_446672.1| sensor histidine kinase [Salinibacter ruber DSM 13855] gi|83756761|gb|ABC44874.1| sensor histidine kinase with a PAS domain [Salinibacter ruber DSM 13855] Length = 720 Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 84/253 (33%), Positives = 138/253 (54%), Gaps = 13/253 (5%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ----RFGPL-GN 620 + + L AK+ AE+ S KS LA +SHEIRTPLT+IIGFSE I+ + P N Sbjct: 456 RREAALRDAKEAAEEASRLKSTMLANMSHEIRTPLTSIIGFSETIEEEADLLEATPADAN 515 Query: 621 PRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P + +A+ I ++G +LD ++ +L++S++E+G+M+L E + LDE + + A Sbjct: 516 PSTLSRFAHLIGKNGRRLLDTLDGVLNLSRLEAGQMDLAAERIPLDELAKGLVDELHPQA 575 Query: 680 NEKRILIRTSFANNIPR-ILADL-RSVKQIAL-NILSNAIHFTPSGGQIIISTTHTSNEE 736 E + PR ++A + R QIAL N++SNAI +T GG++ + ++ + + Sbjct: 576 EEAGVHCEV---EKTPRPVVARVDRGGMQIALRNLISNAIKYTEEGGRVRVR-SYRAEDA 631 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 ++ V DTG+GM +E +PF Q EGTGLGL + K +++ G + + Sbjct: 632 AVVEVEDTGIGMDADTVEHVFEPFRQASEGLNREYEGTGLGLAVTKQVIEKMNGDIEVDT 691 Query: 797 TPAKGTLIEIIFP 809 GT + + P Sbjct: 692 EEDAGTCVRLRLP 704 >gi|332993865|gb|AEF03920.1| multi-sensor hybrid histidine kinase [Alteromonas sp. SN2] Length = 798 Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 136/234 (58%), Gaps = 10/234 (4%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK+ AE S K++F++ +SHEIRTPL AIIGF +V+ ++ L + + + + I S Sbjct: 420 AKEKAELHSRLKTEFISNISHEIRTPLNAIIGFGQVLTDK----LEDKQTKKLTSQIVNS 475 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 ++L ++NDLLD SKIE+GK+ L + P +L +++ + + + A+ K + I+ + Sbjct: 476 SEMLLQLINDLLDFSKIEAGKLALDYGPYNLRQSIRKLLDIFHAQASNKGLTIKLNIDKE 535 Query: 694 IPR--ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI--LRVRDTGVGM 748 +P+ I +LR +KQ+ N++SNAI F+ +G +I I N + + V+D G+G+ Sbjct: 536 LPKEMIFDELR-LKQVLANLISNAIKFSSAGDIEIGIKVKQKDNTHCLFDVWVQDNGIGI 594 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + + E +PF Q +S + G+GLGL + +++ K ++ S +G+ Sbjct: 595 SESQQENLFQPFIQAESSTARKYGGSGLGLNICNKLLEQMSSKLHVVSAIGQGS 648 >gi|307132370|ref|YP_003884386.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Dickeya dadantii 3937] gi|306529899|gb|ADM99829.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Dickeya dadantii 3937] Length = 921 Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 83/238 (34%), Positives = 133/238 (55%), Gaps = 10/238 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + +K Q +Y Sbjct: 275 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTQL-----TSTQKDYLQ 329 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS N +L+I+ND+LD SK+E+GK+ L P SL + E I L+ A+EK + + Sbjct: 330 TIERSANNLLNIINDVLDFSKLEAGKLVLENIPFSLHNTLDEVIMLLAHTAHEKGLELTL 389 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDT 744 + +++P + + D ++QI N+L NAI FT G I I + +V+L +++DT Sbjct: 390 NIQHDVPEQFVGDPLRLQQIITNLLGNAIKFTEQGNIDIRIEKRRQESLQVLLEIQIKDT 449 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G+ + + + F Q S + GTGLGL + + +V G S P +GT Sbjct: 450 GIGIAEAQQTQLFQAFRQADTSISRQHGGTGLGLVITQRLVREMGGDISFHSKPNQGT 507 >gi|291565788|dbj|BAI88060.1| cyanobacterial phytochrome [Arthrospira platensis NIES-39] Length = 846 Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 78/255 (30%), Positives = 134/255 (52%), Gaps = 9/255 (3%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L K AE + KS+FLA +SHEIRTP+ AI+GF +++K G + + + Y + I Sbjct: 350 LEEVAKRAEMANRSKSEFLANMSHEIRTPMNAILGFCDLLK----GLVEDEKQQSYLDAI 405 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 G ++ +++D+LD+SKIE+GK+ L ++P++L + E + A K + ++ + Sbjct: 406 AAGGRALIGLIDDILDLSKIEAGKLQLEYQPMNLPILLQEIQQIFLPTAMAKGLSLQINI 465 Query: 691 ANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIII----STTHTSNEEVILRVRDTG 745 N+P+I+ D ++QI NI+ NAI FT G I + H S + + + DTG Sbjct: 466 EPNVPKIIEFDEVRLRQILFNIVGNAIKFTEEGSVTISVRAQNCDHDSRVTLEIMIADTG 525 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G++ + ++ + F Q R GTGLGL + + + + GK + S G++ Sbjct: 526 MGISPDQHQQIFEAFVQSEGQSNRRYGGTGLGLAITRRLTNLLGGKLTLESQLGLGSVFT 585 Query: 806 IIFPLYDTSHPHDCI 820 FP + H I Sbjct: 586 FAFPDVQITQSHQLI 600 >gi|316935503|ref|YP_004110485.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas palustris DX-1] gi|315603217|gb|ADU45752.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas palustris DX-1] Length = 1122 Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 93/313 (29%), Positives = 159/313 (50%), Gaps = 19/313 (6%) Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEWKQE 567 E ++L + L K+ T ++S ++ +L + +L M +I +Q Sbjct: 596 EAQQIELAEVLWKLFFALTIIVGVVSWLFVLARLSRQAAEAETRRQTTLLMQEIDAHRQT 655 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 +L AK+ AE + KS ++ +SHE+R+PL AI G++++++ P PR + Sbjct: 656 DAELQRAKEAAESANLAKSRYVVGLSHELRSPLNAISGYAQLLEQDNSLP---PRPRDQI 712 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + RS + + +++ LLDISKIE+G++ L + V E + + + + +L A K I Sbjct: 713 RLMRRSADHLSGLIDGLLDISKIEAGRLYLSRDEVRFGEFLDQLVGMFRLQAAAKDIEFV 772 Query: 688 TSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTG 745 + P + AD + ++Q+ +N+LSNAI FT G Q I+ H N L VRDTG Sbjct: 773 FKRPQYLPPMVYADEKRLRQVLINLLSNAIKFTQQGSVQFIV---HYRNPVAELEVRDTG 829 Query: 746 VGMTNYELEKAMKPF--GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 G+ +LE+ PF G + +Q GTGLGL ++K + G + STP KG+ Sbjct: 830 PGIHADDLERIFAPFERGALGAAQP--HSGTGLGLTISKLLSGVMGGDLTVTSTPDKGST 887 Query: 804 IEIIFPLYDTSHP 816 + L + ++P Sbjct: 888 FRVKLLLSEVTNP 900 >gi|282897495|ref|ZP_06305496.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] gi|281197590|gb|EFA72485.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] Length = 643 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 82/229 (35%), Positives = 123/229 (53%), Gaps = 8/229 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 +++FLA +SHE+ TPLT +IG S + G L PR EY I SG +L+++ND+ Sbjct: 413 RNEFLATISHELLTPLTYVIGMSSTLLRWPLGEL-TPRQREYLQTIHDSGERLLEMINDI 471 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAI-SLVQLYANEKRILIRTSFANNIPR---ILAD 700 LD+S+I++GK L+ SL + SL++ N K L N PR AD Sbjct: 472 LDLSQIQAGKTVLNICEFSLTRLAENIVDSLLEKSTNAKVTLKLDVQVN--PRHDQFSAD 529 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 ++QI N+L+NAI FTP GG + + N VI +V DTG+G+ +L + F Sbjct: 530 PGRIEQIIWNLLTNAIKFTPQGGSVTLRFWVEDNT-VIFQVEDTGIGIPEEKLPLVFEKF 588 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q+ S EGTG+GL L K +V+ + G+ + ST G++ + P Sbjct: 589 QQVDASYHRPYEGTGIGLALTKQLVELHRGRIEVESTVGVGSVFTVWIP 637 >gi|104782259|ref|YP_608757.1| sensor histidine kinase/response regulator [Pseudomonas entomophila L48] gi|95111246|emb|CAK15966.1| putative sensor histidine kinase/response regulator (hybrid) [Pseudomonas entomophila L48] Length = 1156 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 139/250 (55%), Gaps = 3/250 (1%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E Q + +L ++ S +KS+FLA +SHE+RTPL + + ++++ G L + + Sbjct: 465 ELNQAQVELQARADDLQRSSKYKSEFLANMSHELRTPLNSSLILAKLLSENAEGNLSDDQ 524 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +++A I +GN +L+++ND+LDI+K+E+GK+ + E SL+ + Q A +K Sbjct: 525 -VKFAESIYSAGNDLLNLINDILDIAKVEAGKLEVRPESTSLERLAEGLQGMFQPLAQDK 583 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + +P + D + ++Q+ N+LSNAI FT G ++ + +H + ++ V Sbjct: 584 GLDFEVRLEAPLPPAVHTDRQRLEQVLKNLLSNAIKFTEHG-KVSLGISHQAGLGIVFAV 642 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RDTG+G+ + + F Q+ + + GTGLGL +++ + G+ + S+P +G Sbjct: 643 RDTGIGIAADQQQAIFGAFHQVDGTSNRKYGGTGLGLSISRDLAHLLGGQISVDSSPGQG 702 Query: 802 TLIEIIFPLY 811 ++ +I P++ Sbjct: 703 SVFSLILPVH 712 >gi|182414886|ref|YP_001819952.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177842100|gb|ACB76352.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 689 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 136/255 (53%), Gaps = 5/255 (1%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 ++ D++E ++ + +L AK AE+ S K +FLA +SHE+RTPLT ++ +++++ +R Sbjct: 291 SLLDLTERRRVEAELRQAKDDAERASRAKDEFLAALSHELRTPLTPVLMMTQMLEQERSF 350 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL-V 675 P P + I R+ L + +++DLLD+++I GK+ ++ E V + + +AI + Sbjct: 351 P---PEVRDDLRTIRRNVELEMRLIDDLLDLTRITRGKLRMNEEIVDVHRVLQDAIKIGC 407 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 ++KR+ +R F N + D + Q+ N++ NA+ FTP G I + T + S E Sbjct: 408 DDMCSQKRLRVRCEFEANRSAMRGDTARLGQVFWNLIKNAVKFTPEDGAITLRTRNPSPE 467 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RV DTG+G+ L + F Q R G GLGL + +A+V+ + G Sbjct: 468 RLEVRVADTGIGIEASVLPQIFNAFEQGGAHITRRFGGLGLGLAICRALVELHHGTIVAR 527 Query: 796 S-TPAKGTLIEIIFP 809 S P G + P Sbjct: 528 SEGPGHGAEFIVELP 542 >gi|298376648|ref|ZP_06986603.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] gi|298266526|gb|EFI08184.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] Length = 423 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 142/260 (54%), Gaps = 18/260 (6%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + ++DI+E +Q++ L ++ A+K K+ F+A +SHEIRTPL AI+GF+ ++ Sbjct: 161 VMLNDITEQRQDQLALMKVQE-ADK---MKNAFIANMSHEIRTPLNAIVGFAHLVTETT- 215 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 EY + I+++ +L+L +ND+LD+SKIESG++N + V L + EA + Sbjct: 216 ---NASEQREYFSIINKNCDLLLKQINDILDLSKIESGRLNYNVSEVELRDICQEAYVVQ 272 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 L L+ S A R+ D V+Q+ LN+LSNAI FT G IS + E Sbjct: 273 SLKMTSDVALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSKG---FISLFYEV-E 328 Query: 736 EVILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ +RV DTG+G++ +LE + F ++ + Q G GLGLP+ K +V+ G+ Sbjct: 329 DMFVRVSVMDTGIGISEEKLESVFERFVKLDDFYQ----GAGLGLPICKMIVEQLGGEIG 384 Query: 794 IFSTPAKGTLIEIIFPLYDT 813 + S KG+ PL T Sbjct: 385 VRSELGKGSTFWFTLPLVVT 404 >gi|163853824|ref|YP_001641867.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163665429|gb|ABY32796.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 693 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 98/368 (26%), Positives = 173/368 (47%), Gaps = 38/368 (10%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 ++EAT++ + + +G I + + L G KP + +P V+ +E Sbjct: 50 LVEATTEAVVQRDGQGRITFASAGFAALLGM-------KPLELIGSTLSPQVIERGASEQ 102 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIK-----KLPFSSC-----YSLTMHDISEWKQ 566 + +R EE+L+ + + + ++P S + D++ + Sbjct: 103 RADGVR----------VVEERLVPVDGLPRWFSFIEMPVSGSVDGPNWLRAGQDVTARVE 152 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 L AK AE + KS FLA VSHE+RTPL I+G ++++ + R +P Y Sbjct: 153 AARVLDEAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTRL----DPEQRTY 208 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 SG +L +V+ +LD S+IE+G+++L EP + V + L+ A +K + I Sbjct: 209 VEAFRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEI 268 Query: 687 RTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS---NEEVILRVR 742 A+++ + + D V+QI +N+ NAI FT +GG + +S + E ++L V Sbjct: 269 ALDIADDLAALRVGDADRVRQILVNLAGNAIKFTQAGG-VGVSLARSGEGQGEGLVLTVE 327 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG G+ + + F Q +S EGTGLGL + + +V+ G ST +G+ Sbjct: 328 DTGPGIPEERIPILFEEFEQGDDSAS--HEGTGLGLAITRRLVERMNGTIEARSTVGRGS 385 Query: 803 LIEIIFPL 810 ++ PL Sbjct: 386 TFRVVLPL 393 >gi|88799412|ref|ZP_01114990.1| hypothetical tryptophan-rich sensor protein [Reinekea sp. MED297] gi|88777951|gb|EAR09148.1| hypothetical tryptophan-rich sensor protein [Reinekea sp. MED297] Length = 888 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 86/253 (33%), Positives = 135/253 (53%), Gaps = 12/253 (4%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E +++ N L++A++ AE+ + KS FLA +SHEIRTPL AIIGF+E+ +++ N Sbjct: 505 EVERKTNDLTNAQQAAEQATIAKSQFLANMSHEIRTPLNAIIGFAELAQDE-----SNLM 559 Query: 623 YIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 I+ + I S +L +VND+LD SK+E+GK+ LH P SL E S+ + A Sbjct: 560 TIQSHLKGISSSSEALLGLVNDVLDYSKLEAGKLELHRAPFSLQELAKRLRSIFETQARA 619 Query: 682 KRILIRTSF---ANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV 737 + + R AN I++D ++QI +N+ SNAI FT G + + ++ Sbjct: 620 RGLSFRIDVDCPANK--DIVSDETRLQQILINLCSNAIKFTRHGDIHVQMQVLEEQETQL 677 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 +L V+DTG+GMT E + F Q +S GTGLGL + + + G+ + S Sbjct: 678 MLVVKDTGIGMTESERARIFDQFTQADSSITRHYGGTGLGLSITMTLTELLDGQVMVESE 737 Query: 798 PAKGTLIEIIFPL 810 G+ I P+ Sbjct: 738 QGVGSQFTIRLPV 750 >gi|217037913|gb|ACJ76428.1| hybrid sensor kinase RscS [Aliivibrio fischeri] Length = 943 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 109/385 (28%), Positives = 188/385 (48%), Gaps = 37/385 (9%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + E E +L + E D I I++++ + N++ S L G +EDI K Sbjct: 269 RSEKEKTKLALVAEYAHDAIFILDKQSKLTWINQSYSVLSGNTLEDIKGKDL-------- 320 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL-------------LSLRIIIKKLPFSS 552 PSV+ L +I ++ L+ + G++ +L +S+ I K Sbjct: 321 PSVLQ--LDKIQHANIFTLLQSLKTGTSVSFELTNNHKDGTLYWIDVSVTPIFKPNGNIM 378 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 Y + DI++ K+ ++KL A A+ + KS FLA +SHE+RTPL I+G +++I++ Sbjct: 379 HYVVVERDITKKKELEDKLIKAADKADVSNKAKSTFLATMSHELRTPLNGILGMAQIIES 438 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + + + + SG+ +L ++ND+LD SKIE K+ L+ ++ + + I Sbjct: 439 N----IKDEEQHKQIKVLLESGDHLLSLLNDILDFSKIEQNKLELNHASFYFNDVI-DPI 493 Query: 673 SLVQLYANEKRILIRTSFANNIPR---ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 + L E + L + NNI L D ++QI N++SNA+ FT G I ++ Sbjct: 494 ANTYLSICEDKGL-QFIINNNINEKTIFLGDKPRIRQIIFNLISNAVKFTHKGS-ITLNF 551 Query: 730 THT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 +HT + V ++V+DTG+G+ L+ +PF Q S + GTGLGL + K + Sbjct: 552 SHTLTPKGEQAVQIKVQDTGIGIRKKRLKHIFEPFIQAETSTTRQYGGTGLGLAIVKQLT 611 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810 D G + S+ KGT ++ PL Sbjct: 612 DTMKGYISVNSSEGKGTCFTLVLPL 636 >gi|152994992|ref|YP_001339827.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150835916|gb|ABR69892.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 1154 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 138/246 (56%), Gaps = 6/246 (2%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + +I ++ L +AK+ AE+ + KS +L +SHE+RTPL +IIG+++++ + P Sbjct: 662 IREIDAHQETDRALQNAKEQAERANEAKSRYLTGISHELRTPLQSIIGYAQLLSEKANTP 721 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 G+ ++ I RSG + D++ LLDISKIE+G+ +L+ V L + + + S+ + Sbjct: 722 SGHQNGLD---IIHRSGLYLADLIEGLLDISKIEAGRFDLYRNTVDLPKLIDQLNSMFAM 778 Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A +K I +++ +P+ ++ D + ++QI +N+LSNA+ +TP G ++ + N+ Sbjct: 779 QARDKGIQLQSKILAPLPQHVVTDEKRLRQILINLLSNAVKYTPKGS--VLFEVNYRNQV 836 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +RDTGVG+ L++ PF ++ + GTGLGL + K + + G S Sbjct: 837 AEFVIRDTGVGIKEGHLKRIFDPFERVRDVSTGNLPGTGLGLTIVKLLTEIMGGDIQAHS 896 Query: 797 TPAKGT 802 +G+ Sbjct: 897 VVGEGS 902 >gi|301166797|emb|CBW26374.1| putative histidine kinase/response regulator fusion protein [Bacteriovorax marinus SJ] Length = 1089 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 130/247 (52%), Gaps = 8/247 (3%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + +L AK++AE KS+FLA +SHEIRTP+ I+G ++ ++ Sbjct: 699 QKELVIAKEMAEASEEAKSEFLANMSHEIRTPMNGILGMISLLSESDL----TKEQMDML 754 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I SG++++ I+ND+LDISK+++GK L + + L A+EK I + Sbjct: 755 ETIQSSGDILMTILNDILDISKLDAGKYELDIRDFDIRNCIENTTFLFSTLASEKGINLT 814 Query: 688 TSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV--ILRVRD 743 ++ ++ +P L D+ ++QI +N LSNAI FT G +I + S+ +V ++ V D Sbjct: 815 STISSVVPLFLKGDVTRIRQILVNFLSNAIKFTERGEVKIEVGAIKKSDRDVSLVISVID 874 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ + E + F Q +S GTGLGL + +++ G+ + S P KGT Sbjct: 875 TGIGIHSDAQENIFEAFSQADSSTTRVYGGTGLGLSICSKLIEIMDGEVKLESEPGKGTN 934 Query: 804 IEIIFPL 810 I PL Sbjct: 935 ITFSLPL 941 >gi|187730064|ref|YP_001880809.1| hybrid sensory histidine kinase TorS [Shigella boydii CDC 3083-94] gi|187427056|gb|ACD06330.1| sensor histidine kinase/response regulator TorS [Shigella boydii CDC 3083-94] Length = 914 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 136/250 (54%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 432 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 487 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 488 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 544 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT GQI++ + T E+ ++ V D+G Sbjct: 545 TAIADDVPTALMGDPRRIRQVITNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGC 602 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 603 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 658 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 659 RLPLRVATAP 668 >gi|152994395|ref|YP_001339230.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150835319|gb|ABR69295.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 1310 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 112/394 (28%), Positives = 186/394 (47%), Gaps = 45/394 (11%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S+ E T D + I+ + I+ N A++ L YP ++ L + LE S Sbjct: 399 SMFEITPDPVWILMNQKIVECNNAAINTLH-YPAKEAL-----LGLEMCDISPEKQTTGM 452 Query: 516 ILSLDLRQTLEKITL-GSTKEEKLLS--------LRIIIKKLPFSS--CYSLTMHDISE- 563 + S L E++TL G+T+ E + + I + F++ ++ D++E Sbjct: 453 LSSSSLNSHFEQVTLSGNTRTEWVFQRYDGEPIYADMTILSIAFNNHPATIISWRDVTER 512 Query: 564 ------WKQEKNKLSH-----------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 Q K KL H AK+ AE + KS+FLA +SHEIRTP+ +IIG Sbjct: 513 VMSQQSLAQYKEKLEHDIALQTTELQTAKEAAENANQAKSEFLANMSHEIRTPMNSIIGM 572 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 S + PL N + Y + S +L+I+ND+LD SKIE+ KM++ P L Sbjct: 573 SSLALQT---PL-NDKQRGYIEKVSHSAESLLNIINDILDFSKIEARKMDIENVPFMLPS 628 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI 725 + + +++L EK + + +P +++ D ++QI LN+ +NA+ FT G+I Sbjct: 629 LIHKVAHVLELKIEEKGLELIIDIDAEVPQQVVGDPTRLRQILLNLGNNAVKFTQQ-GEI 687 Query: 726 IISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 II H+ N + + V+DTG+G++ + + F Q S R GTGLGL ++ Sbjct: 688 IIRAAHSKNNQDDNIIHFSVQDTGIGISKDKQNNLFQSFSQADTSTTRRFGGTGLGLAIS 747 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 K ++ G ++ S KG+ L T + Sbjct: 748 KRLIQLMGGDIWVESEENKGSTFHFTINLQSTGN 781 >gi|83953721|ref|ZP_00962442.1| PAS [Sulfitobacter sp. NAS-14.1] gi|83841666|gb|EAP80835.1| PAS [Sulfitobacter sp. NAS-14.1] Length = 698 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 103/401 (25%), Positives = 189/401 (47%), Gaps = 45/401 (11%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFT 498 ++++R+ EV+ L S +EA +DG + + + +L +N +++ P E +L+ PF Sbjct: 300 QVSERRKRAEVL-LSSGIEALNDGFVMFDAQDRLLLSNSKYKEMYELPSE-VLKPGAPFA 357 Query: 499 VFLEQNTPSV---MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFS-SC 553 L S M Y E ++ R + + S E+ L R+I P + Sbjct: 358 ELLRIGVKSKQFPMGRY-NEEEWIERRLAIHRENRTSETEQHLSGGRVIKASDRPLADGS 416 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y D++E LSHAK AE S K+DF+ +SHE+RTPLT I+G +++ +N Sbjct: 417 YVGLRVDVTE-------LSHAKDAAEAASKAKTDFMGVLSHELRTPLTVIMGVAQLSRNA 469 Query: 614 RF-------------GPLGNPR--------YIEYANYIDR---SGNLVLDIVNDLLDISK 649 R G +G+ Y + + ++R SG +L ++N++LD++K Sbjct: 470 RMLSSSKALLKGYEDGEIGHAEAKRLLDEMYDQLSGLMNRLVQSGEHLLHLINEILDVAK 529 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709 IESG + + P ++ + V I ++ +++K + + AD +QI Sbjct: 530 IESGSLVIEPSPCAVQDIVDPVIEQLRTLSSKKGLAF--DVVQEADMVFADKVRARQILF 587 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 N++ NAI FT +G + + V V D+G G+ EL+ + F Q+ ++ Sbjct: 588 NLIGNAIKFTDTG--FVRLVVKPVGDVVSFEVHDSGAGIPEAELQSIFEVFYQVDSTATR 645 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 R GTG+GL +++++ + G + S +G+ + P+ Sbjct: 646 RAGGTGMGLAISRSLAEMQGGSLSVSSVVGQGSCFILTLPI 686 >gi|320178565|gb|EFW53530.1| Sensor protein torS [Shigella boydii ATCC 9905] Length = 904 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TAIADDVPSALMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|330921689|ref|XP_003299527.1| hypothetical protein PTT_10535 [Pyrenophora teres f. teres 0-1] gi|311326752|gb|EFQ92366.1| hypothetical protein PTT_10535 [Pyrenophora teres f. teres 0-1] Length = 1358 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 79/244 (32%), Positives = 129/244 (52%), Gaps = 11/244 (4%) Query: 574 AKKIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A + A KE+S KS FLA +SHEIRTP+ +IG SE++ + N + A I R Sbjct: 724 ANEAAAKEASRMKSQFLANMSHEIRTPIAGVIGMSELLFDMNL----NDEQKDCAENIHR 779 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 S N +L ++ND+LD SK+ESG++++ SL + + ++ A K + ++S + Sbjct: 780 SANSLLTVINDILDFSKVESGRLDVEEVQFSLSVVLRDVNKMMSFAAQRKGLDYQSSIQD 839 Query: 693 NIP---RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGV 746 + R++ D ++QI N+L+N+I FT G ++IS V V DTG+ Sbjct: 840 EVQADLRVMGDPGRLRQILTNVLTNSIKFTSVGTVKLSVMISQESKDMVTVNFSVVDTGI 899 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ ++ +PF Q +S R GTGLGL ++K +V+ G+ ++ S +GT Sbjct: 900 GIEEEVRKRLFQPFSQADSSTARRFGGTGLGLTISKNLVELMKGQIWLDSKLGQGTTATF 959 Query: 807 IFPL 810 P Sbjct: 960 WIPF 963 >gi|156740811|ref|YP_001430940.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156232139|gb|ABU56922.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 2161 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 90/373 (24%), Positives = 183/373 (49%), Gaps = 41/373 (10%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +IL++ +G+ +++ + I+ N A ++ G P + ++++P + E + Sbjct: 1797 AILQSLGEGVIVVDGDQNIVLYNAAAEQILGVPAQFVVKQPLSRIAEYCAGDGASERACR 1856 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSL-----RIIIKKLPF----SSCYS--LTMHDISEW 564 I LRQ L+ +T ++L L I++ P+ ++ Y + +HDI+ Sbjct: 1857 IYE-GLRQGLQALTEAQKNHNRMLELPEPTQSILLNFAPWVGPRNAMYGSVVVIHDITR- 1914 Query: 565 KQEKNKLSHAKKIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 E E+ K +F++ VSHE+RTPLT+I G+ +++ + NP++ Sbjct: 1915 --------------EVEADRAKREFISNVSHELRTPLTSIKGYVDLL-------MLNPKW 1953 Query: 624 ------IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + Y + + + + +++++ND+L+I +I+ K+ L F+ +S+ E ++ Sbjct: 1954 KLNEEQLSYLSVVKSNTHRLMNLINDILEIGRIDDNKVGLTFKHISIGAIFEEVNKTLRA 2013 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 KR+ A++ P ++AD + Q+ LN+ SNA+ +T G + + + Sbjct: 2014 EIERKRLSFSIEVADHTPPVMADETRLTQVVLNLASNAVKYTYPEGSVKLRAGLNPAGLL 2073 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V D GVG++ + + + F + N + GTGLGL +AK+ V+ + G+ ++ S Sbjct: 2074 QVDVIDNGVGISPEQQQHLFRRFYRADNPLRDEAGGTGLGLSIAKSYVEMHGGQMWVESE 2133 Query: 798 PAKGTLIEIIFPL 810 P KG+ I PL Sbjct: 2134 PGKGSTFSFIIPL 2146 >gi|84390468|ref|ZP_00991479.1| sensor protein TorS [Vibrio splendidus 12B01] gi|84376728|gb|EAP93604.1| sensor protein TorS [Vibrio splendidus 12B01] Length = 1005 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 127/241 (52%), Gaps = 7/241 (2%) Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 + A+ AE+ S KS FLA +SHEIRTP+ ++G + ++K+ PL + YA+ I+ Sbjct: 457 AKARNAAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLKDTGLDPLQSG----YADIIN 512 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 RSG +L I+ND+LD SKIE+G + + L + V + L++ A EK++ Sbjct: 513 RSGKNLLAILNDVLDYSKIEAGHLEIRAASFDLYQMVQDTYQLMEGRAAEKKLNFDFHIE 572 Query: 692 NNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMT 749 N++ R D+ + QI N++ NAI FT SG I IS V+ V DTGVG+ Sbjct: 573 NDVQRYWRGDVTRISQILNNLVGNAIKFTESGSVDIFISLDIEDENRVMFEVSDTGVGID 632 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 E F Q + + G GTGLGL ++K+++ A G + S +G+ P Sbjct: 633 ASEQACLFDAFTQTDSGRNKTG-GTGLGLAISKSIMLAMNGDIGVHSEEGEGSQFWFSLP 691 Query: 810 L 810 L Sbjct: 692 L 692 >gi|269960019|ref|ZP_06174396.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835318|gb|EEZ89400.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 787 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 149/291 (51%), Gaps = 12/291 (4%) Query: 532 STKEEKLLSLRIIIKKLPFSSCYSL-TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 + +E +L + +++ + + + L T H +++ KQ + L+ A + AE+ + KS FLA Sbjct: 216 AQREGRLTWVFVLLSIISLVAIFVLQTQHRVNKLKQLNDDLTEATEKAERAAKAKSQFLA 275 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SHE+RTP+ ++G S++I ++ E+ I SG ++ I+ND+LD SK+ Sbjct: 276 TMSHELRTPMNGVLGISQIIASET----KERETKEHVQVILDSGQHLMTILNDILDFSKV 331 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL---ADLRSVKQI 707 E K+ L P +L + ++ S +Q EK I + N +P + D ++QI Sbjct: 332 EENKLELEAAPFNLPQVLTPVCSAIQPLIEEKNI--KLYVENEVPENIEFNGDCARIRQI 389 Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 N+ NA+ FT G +I + + ++L + DTG+G+ + ++ F Q S Sbjct: 390 LFNLAGNAVKFTSDGHVLIRAELDEPRKRLLLSINDTGIGIPADKQDRIFNSFEQADTST 449 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT--LIEIIFPLYDTSHP 816 + GTGLGL + K + + G+ + S + GT L+E+ P + + P Sbjct: 450 TRKFGGTGLGLAIVKKLTELMGGEVKLKSVESIGTQFLVELPIPWEEKALP 500 >gi|322641155|gb|EFY37797.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|323229436|gb|EGA13559.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] Length = 862 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 17/256 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L+ AKK AE+ + KS L +SHE+RTP+ ++G E+++ P IE Sbjct: 319 ERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQT-------TPLNIE 371 Query: 626 YANYIDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 D + N +L I+N+LLD S+IESG LH E +L + +A+ +Q A K Sbjct: 372 QQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSK 431 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ +RT ++P D ++QI +N+L NA+ FT +GG I T E++I V Sbjct: 432 KLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG--IRLTVKRHEEQLIFLV 489 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G G+ + + F Q + Q GTG+GL +A ++ G + S P G Sbjct: 490 SDSGKGIEIQQQSQIFTAFYQADTNSQ----GTGIGLTIASSLAKMMGGNLTLKSVPGVG 545 Query: 802 TLIEIIFPLYDTSHPH 817 T + ++ PL + P Sbjct: 546 TCVSLVLPLQEYQPPQ 561 >gi|296272592|ref|YP_003655223.1| integral membrane sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM 7299] gi|296096766|gb|ADG92716.1| integral membrane sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM 7299] Length = 765 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 133/235 (56%), Gaps = 11/235 (4%) Query: 573 HAKKIAEKESSH----KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 H K+A +E++ KS FLAR+SHE+RTPL AI+GFS ++K + N Sbjct: 304 HQIKLAMEEANSANKAKSIFLARMSHELRTPLNAILGFSNILKKSMNATQEEKNNL---N 360 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I RSG +L+I+N++L++SKIE+GK+ + + +L E + + S+ EK + + Sbjct: 361 IIKRSGEHLLNIINEILELSKIEAGKIEIIPKVFNLKELIEDINSIFAFRCKEKGLEFKI 420 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 +N+P ++ D ++QI +N+LSN++ FT G I + ++++ ++DTG+G Sbjct: 421 ILDDNLPEVVKMDELRLRQILINLLSNSLKFTNEGE--ISLYLYEKSQKLFFEIKDTGIG 478 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + + +L++ KPF QI + + GTGLGL + K +V G Y S GT Sbjct: 479 IESKDLKRVFKPFEQIKHDDYNKN-GTGLGLSITKELVTLMNGSIYAKSKVNVGT 532 >gi|294678968|ref|YP_003579583.1| sensor histidine kinase/response regulator receiver protein [Rhodobacter capsulatus SB 1003] gi|294477788|gb|ADE87176.1| sensor histidine kinase/response regulator receiver protein [Rhodobacter capsulatus SB 1003] Length = 743 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 99/365 (27%), Positives = 173/365 (47%), Gaps = 26/365 (7%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLF--------GYPVEDILR---KPFTVFL 501 +L LE DG A+ + + ++ NRA F G + +L+ K V + Sbjct: 89 RLWDALETIRDGFAVYDGDLRLVVANRAYLSFFHGEVAITAGVTYDAVLKIVAKHEMVDM 148 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561 P +H E+++ R+ +E I L + + +I + DI Sbjct: 149 AGRDPLDWHH---EMIARIRREHIEPIVLRTRNGHHI----KLIDRWGEDGDLVCLAQDI 201 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 + + + +L A+ AE + KS FLA +SHEIRTP+ ++G +E++ N Sbjct: 202 THIIEREQELEEARNKAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLGETEL----NE 257 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 Y I SG +L I+ND+LD SKIE+ ++ L+ E L+ + E + L+Q A + Sbjct: 258 EQQLYVETIRSSGEALLTIINDVLDYSKIEAERLKLYPEVFDLERCLHEIMVLLQPSAKD 317 Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEV 737 K + + + +P R +AD ++QI N+L NA+ FT +G +++ + E+ Sbjct: 318 KGVKLLVDYDLFLPTRFIADPGRMRQILTNLLGNAVKFTHTGHVLARVVGFERDAEHYEL 377 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V DTG+G++ L+ F Q+ + R EGTGLGL + + +V G ++ S Sbjct: 378 HVTVEDTGIGISPDNLDHVFGEFNQVEATSNRRFEGTGLGLAITRQLVHLMGGSVWVDSQ 437 Query: 798 PAKGT 802 +G+ Sbjct: 438 LGEGS 442 >gi|149280509|ref|ZP_01886627.1| signal transduction histidine kinase [Pedobacter sp. BAL39] gi|149228753|gb|EDM34154.1| signal transduction histidine kinase [Pedobacter sp. BAL39] Length = 711 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 130/231 (56%), Gaps = 11/231 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS F +SHE+RTPL AIIG SE +K+ PL + + + +D S +++L VN++ Sbjct: 339 KSRFFTSISHEMRTPLNAIIGVSEQLKS---TPLNDDQR-AMSKLLDNSSSMLLSAVNEV 394 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL--ADLR 702 LD S++E+GK++L P + E ++ A++K++ + + P +L D Sbjct: 395 LDFSRLETGKLSLAKTPFKYKRVLRELRDTAKVLADQKKLTLEL-LDEDAPDLLLYGDPY 453 Query: 703 SVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKP 759 +KQI +N+++NAI FT G + ++ +E+ IL V DTG+G+ L Sbjct: 454 RLKQIVMNLIANAIKFTDKGKVSVAVNVKRNDHEQAILLISVTDTGIGIAAENLPTIFNE 513 Query: 760 FGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F Q+ NS++I + G+GLGLP++K +V+ + G ++ ST KGT I P Sbjct: 514 FSQVINSKRIDWQKGSGLGLPISKKLVELHKGNIHVESTLNKGTAFHIELP 564 >gi|197117892|ref|YP_002138319.1| sensor histidine kinase response regulator lipoprotein, HAMP/Hpt domain-containing protein [Geobacter bemidjiensis Bem] gi|197087252|gb|ACH38523.1| sensor histidine kinase response regulator lipoprotein, HAMP and Hpt domain-containing protein [Geobacter bemidjiensis Bem] Length = 818 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 126/241 (52%), Gaps = 5/241 (2%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + ++ ++ A + A+ + KSDFLA++SHEIRTP+ ++G +E++ N R Sbjct: 164 QLEESLEEVRRAMESAQSANRAKSDFLAQMSHEIRTPMYGVLGMTELLLNTYLSK-EQAR 222 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 ++E SG +L I+N++LD SKIE+G+M L P L + ++A+++ A K Sbjct: 223 FVESVRC---SGEALLGIINNILDFSKIEAGRMELEMIPFDLHQLTADAVAMFADDAARK 279 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 I + +P + D ++Q+ +N+L NA+ FTP G + + V + V Sbjct: 280 GIALSCRIEPGLPVMFQGDPGRLRQVMVNLLGNAVKFTPEGAVTLSVSLVRRPALVRVTV 339 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G++ E+ F Q S R GTGLGL +AK + + G + S P KG Sbjct: 340 EDTGIGISREAQERIFDHFAQGDESMTRRYGGTGLGLAIAKQLTELMGGGMELSSEPGKG 399 Query: 802 T 802 + Sbjct: 400 S 400 >gi|39934628|ref|NP_946904.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] gi|39648477|emb|CAE26999.1| sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain [Rhodopseudomonas palustris CGA009] Length = 903 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 146/247 (59%), Gaps = 8/247 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE-VIKNQRFGPL 618 D++E + +++L A+ AE+ S+ K+DFLA +SHEIRTPL IIG+++ V++++ P Sbjct: 375 DLTEQLKYEDELKAARASAEQASAAKADFLANMSHEIRTPLNGIIGYADLVLEDETLAP- 433 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + R + + S +L + I++D+LD SKIE+ + L +P+ ++E ++ S+++ Sbjct: 434 -DTRR-QVMRIFEASDSLRV-IIDDILDFSKIEACGLTLESKPLYINELIANCASIIEPK 490 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV 737 A+EK + + + P ++ D ++Q+ LN+++NA+ FT +G ++I+S + V Sbjct: 491 ADEKGLKLIATAQATPPVLIGDAGRLRQVLLNLMNNAVKFTTAGSVELIVSCIGRVDHLV 550 Query: 738 ILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 LR V DTG+G++ + K F Q + + GTGLGL +++ +V A G+ I Sbjct: 551 RLRISVADTGIGISPEAQKGLFKRFSQADETISRKFGGTGLGLAISQRIVQAMHGELKID 610 Query: 796 STPAKGT 802 S P G+ Sbjct: 611 SQPGVGS 617 >gi|299146808|ref|ZP_07039876.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298517299|gb|EFI41180.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 1007 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 81/254 (31%), Positives = 129/254 (50%), Gaps = 11/254 (4%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + D++E ++ +L AK AE+ KS FLA +SHEIRTPL AI+GFSE++ Sbjct: 615 IRVDDVTEREKMIKELQEAKHQAEQSDKLKSAFLANMSHEIRTPLNAIVGFSELM----- 669 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G +Y I+ + L+L ++ND+LD+SK+E+G + L +EP L E + + Sbjct: 670 AYAGEEEKADYIQIINSNNELLLKLINDILDLSKLEAGSVELKYEPFDLSEHFENMFTSM 729 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + I++ + R+ D V QI N ++NAI +T G I + Sbjct: 730 KQRLKNPDIVLTEINPYHCCRVTLDRNRVAQIITNYVTNAIKYTSKGS--IKMGYACKDG 787 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V V+DTG+G+ + + K + F ++ Q GTGLGL + KA+ +A GK Sbjct: 788 GVYFYVKDTGIGIADDKKGKVFQRFEKLDEFAQ----GTGLGLSICKAIAEAMGGKVGFE 843 Query: 796 STPAKGTLIEIIFP 809 S +G+L P Sbjct: 844 SVHNEGSLFWAFLP 857 >gi|217037909|gb|ACJ76426.1| hybrid sensor kinase RscS [Aliivibrio fischeri] Length = 943 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 110/391 (28%), Positives = 190/391 (48%), Gaps = 49/391 (12%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + E E +L + E D I I++++ + N++ S L G +EDI K Sbjct: 269 RSEKEKTKLALVAEHAHDAIFILDKQSKLTWINQSYSVLSGNTLEDIKGKDL-------- 320 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL-------------LSLRIIIKKLPFSS 552 PSV+ L +I ++ L+ + G++ +L +S+ I K Sbjct: 321 PSVLQ--LDKIQHANIFTLLQSLKAGTSVSFELTNNHKDGTLYWIDVSVTPIFKPNGNIM 378 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 Y + DI++ K+ +NKL A A+ + KS FLA +SHE+RTPL I+G +++I++ Sbjct: 379 HYVVVERDITKKKELENKLIKAADKADVSNKAKSTFLATMSHELRTPLNGILGMAQIIES 438 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL-----HFEPVSLDEA 667 + + + + SG+ +L ++ND+LD SKIE K+ L +F V +D Sbjct: 439 N----IKDEEQHKQIKVLLESGDHLLSLLNDILDFSKIEQNKLELNHASFYFNDV-IDPI 493 Query: 668 VSEAISLVQ----LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 + +S+ + + + I +T F + PRI +QI N++SNA+ FT G Sbjct: 494 ANTYLSICEDKGLQFIIDNNINEKTIFIGDKPRI-------RQIIFNLISNAVKFTHKGS 546 Query: 724 QIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 I ++ +HT + + ++V+DTG+G+ L+ +PF Q S + GTGLGL Sbjct: 547 -ITLNFSHTLTAKGEQAIQIKVQDTGIGIRKKRLKHIFEPFIQAETSTTRQYGGTGLGLA 605 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + K + D G + S+ KGT ++ PL Sbjct: 606 IVKQLTDTMKGYISVNSSEGKGTCFTLVLPL 636 >gi|161984909|ref|YP_408631.2| hybrid sensory histidine kinase TorS [Shigella boydii Sb227] Length = 914 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 136/250 (54%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 432 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 487 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 488 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 544 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT GQI++ + T E+ ++ V D+G Sbjct: 545 TAIADDVPTALMGDPRRIRQVITNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGC 602 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 603 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 658 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 659 RLPLRVATAP 668 >gi|315127469|ref|YP_004069472.1| sensory transduction histidine kinase [Pseudoalteromonas sp. SM9913] gi|315015983|gb|ADT69321.1| sensory transduction histidine kinase [Pseudoalteromonas sp. SM9913] Length = 885 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 139/239 (58%), Gaps = 6/239 (2%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +KL A AE+ + KS FLA +SHEIRTPLTAI+GF+E + + P + ++ Sbjct: 393 SKLETAIAQAEQANQLKSRFLANMSHEIRTPLTAIMGFTEQLLHSD-KPTNDKHHL---G 448 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I R+ +L+++N++LD+SKIE+ K+ + P+++ + + + S+++ A EK++ Sbjct: 449 TILRNSKHLLELINNILDLSKIEAEKLAVEQTPLNVVQLIHDVESIIKPLAQEKQLSFTI 508 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 ++A +P + +D+ +KQI +NI SNA+ FT GQ+ I+ + + + + + DTG+G Sbjct: 509 NYALPLPHTINSDITRLKQILINIASNAVKFTEQ-GQVTITAKYQAPKTLTFVIEDTGIG 567 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 M++ ++++ PF Q + R GTGLGL ++K + G + S G+ I Sbjct: 568 MSSNQIKRLFTPFEQADATTTRRFGGTGLGLCISKNLAQLLGGDVSVTSEVGVGSCFTI 626 >gi|255036287|ref|YP_003086908.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254949043|gb|ACT93743.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 785 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 88/258 (34%), Positives = 139/258 (53%), Gaps = 13/258 (5%) Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + Y M DI E K+ + +L AK+ AE + KS FL+ +SHEIRTP+ A+IGF+ ++ Sbjct: 382 TKLYGAIM-DIDEQKKAEQELIKAKEQAEMAAVAKSQFLSTMSHEIRTPMNAVIGFTHLL 440 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE-AVS 669 Q P +EY N + S +L ++ND+LD SKIE+GK + FE V + A+ Sbjct: 441 LQQD----PKPEQMEYLNILKFSAENLLVLINDILDFSKIEAGK--IEFEEVDFNVLALL 494 Query: 670 EAI-SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII- 726 E I S V ANEK I+++ +N++ ++ D + QI N++SNA+ FT SG I Sbjct: 495 ENIRSGVLQKANEKGIMLKLKVSNDVNIMVVGDPTRLGQILTNLVSNAVKFTESGKVTIS 554 Query: 727 --ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 +S + + RV DTG+G+ +LE F Q + + G+GLGL + K + Sbjct: 555 AAVSARADKHVTIDFRVEDTGIGIPPEKLENIFDSFTQATSDTTRKYGGSGLGLTITKRL 614 Query: 785 VDANMGKFYIFSTPAKGT 802 ++ ++ S G+ Sbjct: 615 LELQKSNIHVDSEQGNGS 632 >gi|223986669|ref|ZP_03636659.1| hypothetical protein HOLDEFILI_03981 [Holdemania filiformis DSM 12042] gi|223961355|gb|EEF65877.1| hypothetical protein HOLDEFILI_03981 [Holdemania filiformis DSM 12042] Length = 879 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 86/271 (31%), Positives = 136/271 (50%), Gaps = 18/271 (6%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV---- 609 Y +++ D ++ + L A +A+K + K DFL+R+SHEIRTP+ AIIG + + Sbjct: 323 YIISIGDQTDALLAQQNLRDALTLAQKANDAKKDFLSRMSHEIRTPMNAIIGMATIAAAN 382 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 I +Q R + I S +L ++ND+LD+SKIE GK+ + EP + + Sbjct: 383 IHDQN-------RVEDCLAKIGFSSKHLLSLINDVLDMSKIEEGKLTMSHEPFEFRQLIQ 435 Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 S++ A + + + ++ D V QI LN+LSNA+ FTP G+I + Sbjct: 436 SITSIIDSQARSRNQNFEATVVDFTEEMVVGDAMRVNQILLNLLSNAVKFTPENGKIRLE 495 Query: 729 TTHTS--NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 N +V +R V DTG+GM L++ PF Q + R GTGLG+ + K + Sbjct: 496 VRQIGIRNNQVRMRFTVSDTGIGMNENFLQRLYMPFEQADSMISQRFGGTGLGMSITKNL 555 Query: 785 VDANMGKFYIFSTPAKGT--LIEIIFPLYDT 813 V G +FS +GT ++E+ F D Sbjct: 556 VSLLGGTIQVFSKENEGTTFIVELSFERLDA 586 >gi|307545605|ref|YP_003898084.1| multi-sensor hybrid histidine kinase [Halomonas elongata DSM 2581] gi|307217629|emb|CBV42899.1| multi-sensor hybrid histidine kinase [Halomonas elongata DSM 2581] Length = 911 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 133/251 (52%), Gaps = 10/251 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A + A + KS+FLA +SHEIRTPL IIGF ++ N R E+ ++ Sbjct: 249 ELDLAHRRALDANRAKSEFLANMSHEIRTPLNGIIGFCRLLHRSEL----NARQREWLDH 304 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + R+ + +L +VND+LD SKIE+G++ L P+ + V E + L A +K + + Sbjct: 305 VRRACDNLLMLVNDVLDFSKIEAGRLELEHRPLDMVALVDEVLGLQAPQAQQKNLQLLGL 364 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVIL--RVRDTG 745 +++P + D ++Q+ N++ NA+ FT G I+ +S TS+ + L V DTG Sbjct: 365 VYDDVPGELFGDPLRIRQVLTNLVHNAVKFTDRGEVIVRVSVEDTSHNQTTLNVSVSDTG 424 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G++ + F Q S Q + GTGLGL + + +V+ G+ + S +G+ Sbjct: 425 IGLSQACQRQLFDAFRQGETSHQRQFGGTGLGLAICRQLVEQMGGEISVDSESGQGSTFF 484 Query: 806 IIFPL--YDTS 814 PL +DTS Sbjct: 485 FTLPLDAHDTS 495 >gi|218694528|ref|YP_002402195.1| hybrid sensory histidine kinase TorS [Escherichia coli 55989] gi|218351260|emb|CAU96964.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli 55989] Length = 914 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 432 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPTLNAQRDDLRAITD- 487 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 488 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 544 Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 545 TAIADDVPSALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 602 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 603 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 658 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 659 RLPLRVATAP 668 >gi|198243220|ref|YP_002215737.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|207857102|ref|YP_002243753.1| two-component sensor kinase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|197937736|gb|ACH75069.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|206708905|emb|CAR33235.1| putative two-component sensor kinase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 920 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 17/256 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L+ AKK AE+ + KS L +SHE+RTP+ ++G E+++ P IE Sbjct: 377 ERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQT-------TPLNIE 429 Query: 626 YANYIDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 D + N +L I+N+LLD S+IESG LH E +L + +A+ +Q A K Sbjct: 430 QQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSK 489 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ +RT ++P D ++QI +N+L NA+ FT +GG I T E++I V Sbjct: 490 KLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG--IRLTVKRHEEQLIFLV 547 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G G+ + + F Q + Q GTG+GL +A ++ G + S P G Sbjct: 548 SDSGKGIEIQQQSQIFTAFYQADTNSQ----GTGIGLTIASSLAKMMGGNLTLKSVPGVG 603 Query: 802 TLIEIIFPLYDTSHPH 817 T + ++ PL + P Sbjct: 604 TCVSLVLPLQEYQPPQ 619 >gi|117923577|ref|YP_864194.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607333|gb|ABK42788.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 948 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 126/237 (53%), Gaps = 8/237 (3%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A K + KSDFLA +SHEIRTP+ AI+G +E+++ + Y + SG + Sbjct: 428 ALKANRAKSDFLAVMSHEIRTPMNAIMGMTELLEETELTTIQR----NYLSICRSSGQNL 483 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ND+LDISK+E+G+M + P L + +A ++ A EK + +P I Sbjct: 484 LQLINDILDISKVEAGRMEVAVAPFHLHRIIHDANQVILFRAQEKGLNQIVYIDPAVPTI 543 Query: 698 L-ADLRSVKQIALNILSNAIHFTPSG--GQIIISTTHTSNE-EVILRVRDTGVGMTNYEL 753 L D ++QI +N L N++ FT SG ++ + H + E ++++ V DTG+G+ E Sbjct: 544 LLGDQARIRQILINFLGNSVKFTQSGTIATLVTTRAHANKEDQLVIHVVDTGIGIEQSEQ 603 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 E K F Q+ +S Q + GTGLGL + +V G + S KG+ + PL Sbjct: 604 EAIFKAFHQVDSSNQRQQGGTGLGLAICLKLVALMQGSVSLSSRAGKGSTFTLTLPL 660 >gi|312886589|ref|ZP_07746197.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311300992|gb|EFQ78053.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1025 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 80/248 (32%), Positives = 135/248 (54%), Gaps = 13/248 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I++ K + L AK+ AE +S K+ FL+ +SHEIRTP+ A+IGF+ ++ L N Sbjct: 625 ITDRKLAEQALIQAKEQAENAASAKTQFLSTMSHEIRTPMNAVIGFTHLL-------LQN 677 Query: 621 PR--YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 PR +EY + SG +L ++ND+LD SKIE+GK+ +L + V + +Q Sbjct: 678 PREDQVEYLKILKFSGENLLVLINDILDFSKIEAGKLEFEHVDFNLKDLVRNIRAAMQQR 737 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736 A EK I ++ ++P+ ++ D + QI N++SNA+ FT G ++ ++ + N E Sbjct: 738 AIEKGIQLKLLVDEDLPQAVIGDPVRLGQILSNLISNALKFTSVGKVVVSASLVSRNNEY 797 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V V+DTG+G+ + + + F Q + + GTGLGL + K +++ + Sbjct: 798 TIVSFEVKDTGIGIPTEKQQAIFESFTQASSDTTRKYGGTGLGLTITKRLLEMQGSAIQL 857 Query: 795 FSTPAKGT 802 S P KG+ Sbjct: 858 DSEPGKGS 865 >gi|192290144|ref|YP_001990749.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192283893|gb|ACF00274.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 903 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 146/247 (59%), Gaps = 8/247 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE-VIKNQRFGPL 618 D++E + +++L A+ AE+ S+ K+DFLA +SHEIRTPL IIG+++ V++++ P Sbjct: 375 DLTEQLKYEDELKAARASAEQASAAKADFLANMSHEIRTPLNGIIGYADLVLEDETLAP- 433 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + R + + S +L + I++D+LD SKIE+ + L +P+ ++E ++ S+++ Sbjct: 434 -DTRR-QVMRIFEASDSLRV-IIDDILDFSKIEACGLTLESKPLYINELIANCASIIEPK 490 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV 737 A+EK + + + P ++ D ++Q+ LN+++NA+ FT +G ++I+S + V Sbjct: 491 ADEKGLKLIATAQATPPVLIGDAGRLRQVLLNLMNNAVKFTTAGSVELIVSCIGRVDHLV 550 Query: 738 ILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 LR V DTG+G++ + K F Q + + GTGLGL +++ +V A G+ I Sbjct: 551 RLRISVADTGIGISPEAQKGLFKRFSQADETISRKFGGTGLGLAISQRIVQAMHGELKID 610 Query: 796 STPAKGT 802 S P G+ Sbjct: 611 SQPGVGS 617 >gi|153869369|ref|ZP_01998997.1| sensor histidine kinase/response regulator [Beggiatoa sp. PS] gi|152074110|gb|EDN71002.1| sensor histidine kinase/response regulator [Beggiatoa sp. PS] Length = 483 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 86/280 (30%), Positives = 142/280 (50%), Gaps = 27/280 (9%) Query: 560 DISEWKQEKNKL----SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 D+ E Q+ + + A+K+AE + K+ FLAR+SHE+RTPL AI+G+S +I+ + Sbjct: 201 DLKEANQQTSYMLAIAEQARKMAEAANQAKTSFLARMSHELRTPLNAILGYSGMIQ-EDA 259 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 LG + + I +G +LD ++++LDISKIES K+ L+ ++ V+E ++ + Sbjct: 260 SDLGYQDILPDLDKIQVAGKQLLDTISNILDISKIESDKLELNLTEFAVSNLVNEVVTTI 319 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG-----------GQ 724 Q ++++ R+ AD V QI LNIL+NA FT +G + Sbjct: 320 QPLIKINGNQFECQMSDDLGRLYADYHKVTQILLNILNNANKFTHAGKITLDVTRKRMSK 379 Query: 725 IIISTTH-----------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 II T + T + V ++ DTG+G+ + +L + F Q+ S + G Sbjct: 380 IIAETENCELALESEVLDTFTDWVFFQINDTGIGIPSDKLNLIFEAFAQVDTSTTRQFGG 439 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 TGLGL + + A GK + ST +G+ I P + T Sbjct: 440 TGLGLAICENFCKAMGGKISLCSTIDEGSTFTIQLPTWVT 479 >gi|116696021|ref|YP_841597.1| signal transduction histidine kinase [Ralstonia eutropha H16] gi|113530520|emb|CAJ96867.1| signal transduction histidine kinase containing a receiver domain (hybrid) [Ralstonia eutropha H16] Length = 1106 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 75/257 (29%), Positives = 135/257 (52%), Gaps = 10/257 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 ++D+++ ++ + +L A + A+ + KS FLA +SHEIRTPL ++G E++ R Sbjct: 490 ALNDVTDARRSEARLREAIRAADAANHAKSSFLATMSHEIRTPLNGMLGSIELLGLTRL- 548 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + R + + + ++ I+ND+LD SKIE+G+M+L P ++E V + + Sbjct: 549 ---DSRQRDQLAVMQHASQSLIYIINDVLDFSKIEAGQMSLQLRPCRVEEIVEDVTR--R 603 Query: 677 LYANEKRILIRTSFANN---IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 A R +R N+ + ++AD+ ++QI N++SNA+ FT G ++I++ Sbjct: 604 FAAEAARKQLRLLCVNDPSLVEPVMADVVKLEQILNNLVSNAVKFTEQG-KVIVTAMRKP 662 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 V +RV DTG+G+ + + +PF Q GTGLGL + + +V G+ Sbjct: 663 GGGVEIRVIDTGIGIAARDQRRLFEPFVQAEQPDTRHYGGTGLGLSICRRLVGLMSGEIR 722 Query: 794 IFSTPAKGTLIEIIFPL 810 + S P G+ + PL Sbjct: 723 LVSEPGLGSCFTVSLPL 739 >gi|62179983|ref|YP_216400.1| secretion system regulator:sensor component [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127616|gb|AAX65319.1| Secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322714450|gb|EFZ06021.1| secretion system regulator:sensor component [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 920 Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 17/256 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L+ AKK AE+ + KS L +SHE+RTP+ ++G E+++ P IE Sbjct: 377 ERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQT-------TPLNIE 429 Query: 626 YANYIDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 D + N +L I+N+LLD S+IESG LH E +L + +A+ +Q A K Sbjct: 430 QQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSK 489 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ +RT ++P D ++QI +N+L NA+ FT +GG I T E++I V Sbjct: 490 KLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG--IRLTVKRHEEQLIFLV 547 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G G+ + + F Q + Q GTG+GL +A ++ G + S P G Sbjct: 548 SDSGKGIEIQQQSQIFTAFYQADTNSQ----GTGIGLTIASSLAKMMGGNLTLKSVPGVG 603 Query: 802 TLIEIIFPLYDTSHPH 817 T + ++ PL + P Sbjct: 604 TCVSLVLPLQEYQPPQ 619 >gi|312960762|ref|ZP_07775267.1| hypothetical protein PFWH6_2670 [Pseudomonas fluorescens WH6] gi|311284420|gb|EFQ62996.1| hypothetical protein PFWH6_2670 [Pseudomonas fluorescens WH6] Length = 1234 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 86/257 (33%), Positives = 133/257 (51%), Gaps = 4/257 (1%) Query: 555 SLTMHDISE-WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 ++T+H +E + + +L A+ A+ + KSDF+A VSHE+RTPLT I+ E + Sbjct: 522 TVTLHHQTEVLEAQAIELIQARNQADSANQAKSDFVATVSHELRTPLTLILAPLEQLSAA 581 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 P IE A R+ +++ VND+LD SK E+GK + V L+ AV Sbjct: 582 TLVPADWRVQIERAQ---RNALRLMNRVNDILDFSKAEAGKFEVCPTLVDLNNAVGVLAE 638 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + A K + S + + D R ++I LN++SNAI FTP+GG + ++ T Sbjct: 639 DAAMVAEGKGCTLTCSIDPALGTVFLDPRHFEKILLNLVSNAIKFTPAGGTVHLAVTPLD 698 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E L V+D+G+G+ EL + F QI NS GTG+GL L K +V+ G+ Sbjct: 699 GERFELAVQDSGIGIAPEELPLLFQRFSQIDNSATRHYSGTGIGLALVKDLVELMGGEVG 758 Query: 794 IFSTPAKGTLIEIIFPL 810 + S P +G+ + PL Sbjct: 759 VSSEPGRGSCFFVRLPL 775 >gi|269793059|ref|YP_003317963.1| multi-sensor hybrid histidine kinase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100694|gb|ACZ19681.1| multi-sensor hybrid histidine kinase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 877 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 79/254 (31%), Positives = 130/254 (51%), Gaps = 7/254 (2%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 M +I+E K+ + +L AK+ AE S K F++ +SHEIRTP+ A++G SE++ + Sbjct: 370 MTEITEQKRMEAELREAKERAEASSRAKMAFVSHISHEIRTPMNAVVGLSEMLLDS---- 425 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 +P E I ++ + +I+ D+LD++ +E+GK+ L S+++ + SL+ Sbjct: 426 CEDPEIREDLELIHQASMSLTEILGDILDLAAVEAGKLRLEESSFSMEDLCAPVFSLMGA 485 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A K + R + + D ++Q+ N+LSNAI FTPSG + + S Sbjct: 486 EAKRKGLEFRGKVEDGASGHFVGDQVRIRQLLWNLLSNAIKFTPSGS--VSARISASEGG 543 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V+ V DTGVG+ +L++ F + R GTGLGL L K +V G + S Sbjct: 544 VLFEVSDTGVGIEEEQLDRIFDYFERGEELLTRRIPGTGLGLALCKKLVSLMGGAIRVRS 603 Query: 797 TPAKGTLIEIIFPL 810 +G+ I PL Sbjct: 604 RRGEGSCFSIWLPL 617 >gi|217969772|ref|YP_002355006.1| histidine kinase [Thauera sp. MZ1T] gi|217507099|gb|ACK54110.1| histidine kinase [Thauera sp. MZ1T] Length = 596 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 82/244 (33%), Positives = 121/244 (49%), Gaps = 7/244 (2%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E ++ L AK+ AE S KS FLA +SHEIRTPL AI+G S ++ + Sbjct: 193 AELQKAHEALKRAKENAESVSEAKSSFLASMSHEIRTPLAAILGMSHLMHQEELPASQRE 252 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 R + I+ +G +L I+N +LD+SKIE+GK L + L V EA++++ A Sbjct: 253 RL----DVIENAGRHLLSIINGILDLSKIEAGKFTLDEAALDLRGVVEEAMAMLAHQAEA 308 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVI 738 K + +R F L D ++Q +N L NA+ FT GG + S T +V Sbjct: 309 KGLSLRAEFDLPPGTFLGDATRLRQALVNYLINALKFTERGGITVRCSASAVDTDAVDVR 368 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG G+ EL + KPF Q + GTGLGL + + + G+ S P Sbjct: 369 FVVEDTGPGIAAAELRRLFKPFTQTEATSTGEHGGTGLGLAITARLAELMGGQAGAESEP 428 Query: 799 AKGT 802 +G+ Sbjct: 429 GRGS 432 >gi|149178944|ref|ZP_01857521.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797] gi|148842218|gb|EDL56604.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797] Length = 1165 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 81/246 (32%), Positives = 132/246 (53%), Gaps = 6/246 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN-QRFGPLGNPRYIEYAN 628 +L A++ A S KS+FLA +SHEIRTPLTAI+GF+E+++N F R + Sbjct: 752 ELRLAQEAALAASHSKSEFLANMSHEIRTPLTAILGFAELLRNDHEFASSAGKRE-QAVK 810 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +GN +L ++ND+LD+SKIE+GK+ + L + SL++ A EK + + T Sbjct: 811 TIQEAGNHLLTVINDILDLSKIEAGKVEIEKTSTQLFNILDHIESLLRPPAIEKGVELVT 870 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VRDTG 745 +P ++ D ++QI +N++ NA+ FT G I NE L+ + D+G Sbjct: 871 RIETPLPDLIETDSTRLRQILMNLVGNAVKFTDKGRIQIKVKFLEENESRFLKFEIEDSG 930 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI-FSTPAKGTLI 804 GM++ + K F Q S + GTGLGL +++ + G + ++ P KGT Sbjct: 931 PGMSDRQAAKMFMAFSQADTSVTRQHGGTGLGLVISRKLARLMGGDVSLAWTEPGKGTCF 990 Query: 805 EIIFPL 810 ++ P+ Sbjct: 991 RVVLPV 996 >gi|166850504|gb|ABY91232.1| FitF [Pseudomonas fluorescens] Length = 1056 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 79/250 (31%), Positives = 134/250 (53%), Gaps = 8/250 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DISE K + ++ ++ AE+ + KS+FL +SHEIRTPL AIIG + + + Sbjct: 444 VLQDISERKAVEAQIQQSRHDAERATQAKSEFLDCMSHEIRTPLNAIIGMAHLALDLPLE 503 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P+ +Y IDR+ ++ +N +LD+SKIE+GK+++ L E V + + LV+ Sbjct: 504 PVQR----DYIEKIDRAAKHLVGTINGVLDLSKIEAGKLSMEQVGFDLRELVDDVLLLVR 559 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSN 734 A EK + ++ ++P R + D + Q+ N++ NAI FT +G I + + Sbjct: 560 QRAEEKALRLQLDIPASLPRRYVGDPLRLAQVLTNLVDNAIKFTEAGHVCIGVCLVRQWD 619 Query: 735 EEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + +L V DTGVG+++ + + F Q S R G+GLGL ++K +V G Sbjct: 620 HQALLCFSVTDTGVGISDEQQARLFNVFVQADRSISRRYGGSGLGLTISKKIVQLMQGDI 679 Query: 793 YIFSTPAKGT 802 ++ S P +G Sbjct: 680 WVKSQPGQGA 689 >gi|220922969|ref|YP_002498271.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219947576|gb|ACL57968.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 969 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 127/255 (49%), Gaps = 4/255 (1%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D++E +++ +L AK AE + K++FLA +SHE+RTPLT ++G +++ Sbjct: 559 AIRDVTERVRQERRLEQAKVAAEAGARVKAEFLANMSHELRTPLTGMLGVHDLLAGDTSL 618 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 I A RS +L IVND+LD SKIE+G+M + P SL V LV Sbjct: 619 SAAQRHLIGLAQEAGRS---LLAIVNDILDFSKIEAGQMAIERVPFSLRALVESCRELVA 675 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A K + + ++P + D ++QI LN+ SNA+ FTP G + + Sbjct: 676 ESAKGKPLRLVAEIEGDVPDWYVGDPTRLRQILLNLASNAVKFTPQGEIALRVRSAAGTG 735 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V + V DTG+G+ +L + F Q S + GTGLGL + K +V+ G + Sbjct: 736 RVRVEVTDTGIGIPADKLPLLFERFSQADTSTTRQYGGTGLGLVICKRLVELMGGAIGVE 795 Query: 796 STPAKGTLIEIIFPL 810 S P +G+ PL Sbjct: 796 SIPGQGSTFWFELPL 810 >gi|229013791|ref|ZP_04170919.1| hypothetical protein bmyco0001_42000 [Bacillus mycoides DSM 2048] gi|229062272|ref|ZP_04199593.1| hypothetical protein bcere0026_43420 [Bacillus cereus AH603] gi|228717000|gb|EEL68681.1| hypothetical protein bcere0026_43420 [Bacillus cereus AH603] gi|228747460|gb|EEL97335.1| hypothetical protein bmyco0001_42000 [Bacillus mycoides DSM 2048] Length = 545 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 101/376 (26%), Positives = 183/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ L + + Sbjct: 198 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEEYLDRLY---------- 247 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 + + TEI+ L +E+I + K K + L + I++ F Sbjct: 248 YESFHHTEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 302 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 303 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 346 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + E + + Sbjct: 347 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKELLEDIHM 405 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + + ++ D +KQI +N+++NAI +TP+GG + + Sbjct: 406 VLDNKAGEKEISLQVNALKRVS-VIGDPGRLKQIFINLINNAIVYTPAGGVVSVELAEDK 464 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 465 YNAYI-KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTIT 523 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 524 VDSEVGEGTTFTVVLP 539 >gi|254563786|ref|YP_003070881.1| PAS sensor hybrid histidine kinase [Methylobacterium extorquens DM4] gi|254271064|emb|CAX27071.1| putative PAS sensor hybrid histidine kinase [Methylobacterium extorquens DM4] Length = 703 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 98/368 (26%), Positives = 173/368 (47%), Gaps = 38/368 (10%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 ++EAT++ + + +G I + + L G KP + +P V+ +E Sbjct: 60 LVEATTEAVVQRDGQGRITFASAGFAALLGM-------KPLELIGSTLSPQVIERGASEQ 112 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIK-----KLPFSSC-----YSLTMHDISEWKQ 566 + +R EE+L+ + + + ++P S + D++ + Sbjct: 113 RADGVR----------VVEERLVPVDGLPRWFSFIEMPVSGSVDGPNWLRAGQDVTARVE 162 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 L AK AE + KS FLA VSHE+RTPL I+G ++++ + R +P Y Sbjct: 163 AARVLDEAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTRL----DPEQRTY 218 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 SG +L +V+ +LD S+IE+G+++L EP + V + L+ A +K + I Sbjct: 219 VEAFRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEI 278 Query: 687 RTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS---NEEVILRVR 742 A+++ + + D V+QI +N+ NAI FT +GG + +S + E ++L V Sbjct: 279 ALDIADDLAALRVGDADRVRQILVNLAGNAIKFTQAGG-VGVSLARSGEGQGEGLVLTVE 337 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG G+ + + F Q +S EGTGLGL + + +V+ G ST +G+ Sbjct: 338 DTGPGIPEERIPILFEEFEQGDDSAS--HEGTGLGLAITRRLVERMNGTIEARSTVGRGS 395 Query: 803 LIEIIFPL 810 ++ PL Sbjct: 396 TFRVVLPL 403 >gi|323947218|gb|EGB43226.1| TMAO reductase sytem sensor TorS [Escherichia coli H120] Length = 914 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 136/250 (54%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 432 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 487 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 488 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 544 Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT GQI++ + T E+ ++ V D+G Sbjct: 545 TAIADDVPSALMGDPRRIRQVITNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGC 602 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 603 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 658 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 659 RLPLRVATAP 668 >gi|302389532|ref|YP_003825353.1| multi-sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] gi|302200160|gb|ADL07730.1| multi-sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] Length = 576 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 103/359 (28%), Positives = 177/359 (49%), Gaps = 33/359 (9%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +L DGI +++ + ++ N A KL G E K + N+ L E Sbjct: 242 LLAGIVDGIIVVDAQRRVMLINPAACKLVGADSEKSAGKKLISIIR-------NYQLDEA 294 Query: 517 LSLDLRQT---LEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKL 571 + L++ ++I L E++L + I I + S + M DI+E K Sbjct: 295 VKKTLKEGSPYFKEIVL--LPREQILKVHITPIKDRAGRISGSVIVMRDITELK------ 346 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 H +K+ +S+FLA VSHE+RTPLT+I GF E + + G + + + ID Sbjct: 347 -HLEKL-------RSEFLANVSHELRTPLTSIKGFVETLLEGAYKDPGLAK--RFLSIID 396 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 + ++N+L+D+SKIE+ ++ L E VS E ++E I + + EK + T Sbjct: 397 AEAGRLYRLINNLMDLSKIETNQLKLRIEDVSAAELINEVIIIFENRLKEKGLKFSTDIP 456 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 ++P++ AD ++Q+ +N+L NAI +T SGG++ I + V RV DTG+G+ Sbjct: 457 KDLPKVKADPDWLRQVFINLLDNAIKYTQSGGRVWIE-AEPKGDVVEFRVCDTGIGIPEE 515 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +L + + F ++ ++ G+GLGL + K +V A G + S +G+ + IF L Sbjct: 516 DLPRVFERFYRVDKARSPEMGGSGLGLAIVKHIVRAFGGDIRVESRVNQGS--KFIFTL 572 >gi|92113190|ref|YP_573118.1| Hpt sensor hybrid histidine kinase [Chromohalobacter salexigens DSM 3043] gi|91796280|gb|ABE58419.1| Hpt sensor hybrid histidine kinase [Chromohalobacter salexigens DSM 3043] Length = 695 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 127/260 (48%), Gaps = 18/260 (6%) Query: 564 WKQEKNKLSHAKKI-------------AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 W++ +++ H +++ AE S KS+F+A +SHE+RTPL ++G +V+ Sbjct: 151 WREARSRARHGERLQRQSQELQRAVQQAEAASQSKSEFMAIMSHEVRTPLNGVVGMLDVL 210 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +++ P R +A + + +L ++ND+LD SKIE+G+++L P L VS Sbjct: 211 EDE---PCQEKREQHFATLRESTASLRA-VINDVLDYSKIEAGRLDLEHSPFPLTRMVSR 266 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 Q LI + P ++ D ++Q+ +N++ NA FT G I +S Sbjct: 267 LAEGYQSRQTSDVSLIVQLGDDLPPVVIGDATRLRQVLMNLMDNAFKFTQVGS-ITLSVQ 325 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + VRDTGVG+ +PF Q+ S R EGTGLGL + +V+A G Sbjct: 326 SRKPATIFFEVRDTGVGIDKQVQAALFEPFTQVDTSLSRRHEGTGLGLAICYRLVEAMGG 385 Query: 791 KFYIFSTPAKGTLIEIIFPL 810 + S P G++ PL Sbjct: 386 HLELNSMPDLGSVFHFCLPL 405 >gi|81246095|gb|ABB66803.1| sensor protein torS [Shigella boydii Sb227] gi|320187205|gb|EFW61906.1| Sensor protein torS [Shigella flexneri CDC 796-83] gi|332093573|gb|EGI98631.1| TMAO reductase sytem sensor TorS [Shigella boydii 3594-74] Length = 904 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 136/250 (54%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT GQI++ + T E+ ++ V D+G Sbjct: 535 TAIADDVPTALMGDPRRIRQVITNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|328947801|ref|YP_004365138.1| histidine kinase [Treponema succinifaciens DSM 2489] gi|328448125|gb|AEB13841.1| histidine kinase [Treponema succinifaciens DSM 2489] Length = 563 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 119/223 (53%), Gaps = 17/223 (7%) Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHEIRTP+ AI+GFSE+ +P Y I+R+ + +L I+ND+LD SKIE Sbjct: 1 MSHEIRTPMNAILGFSEIALKD-----SSPITATYLEKINRAAHTLLTIINDILDFSKIE 55 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALN 710 SGK+ + +LD +S+ S++++ K + + +NN+PR + D +KQ+ LN Sbjct: 56 SGKLEIVPADYNLDTLISDVESIIKVRLASKSVALSIDVSNNVPRNLFGDDIRIKQVLLN 115 Query: 711 ILSNAIHFTPSGGQIIISTTHT---------SNEEVIL--RVRDTGVGMTNYELEKAMKP 759 + NA F+ G I H N+++IL V+DTG+G+ LEK Sbjct: 116 LAGNAAKFSEEGEIKITVKLHEPLKSKESFLENQKIILDFSVKDTGIGIKKENLEKLFTS 175 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 F Q+ + EG+GLGL ++K +V G F + S KG+ Sbjct: 176 FQQVDLQHNRKKEGSGLGLAISKQLVSLMGGTFGVDSEYGKGS 218 >gi|303326243|ref|ZP_07356686.1| sensor histidine kinase with PAS/PAC and response regulator receiver domains [Desulfovibrio sp. 3_1_syn3] gi|302864159|gb|EFL87090.1| sensor histidine kinase with PAS/PAC and response regulator receiver domains [Desulfovibrio sp. 3_1_syn3] Length = 1228 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 129/253 (50%), Gaps = 5/253 (1%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ + +L A A + + KS FLAR+SHEIRTP+ AIIG + + + + Sbjct: 825 ELRRIQTELQEACATANRANEAKSSFLARMSHEIRTPMNAIIGMANIARKKLHARSPTDE 884 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + AN I+ S + +L ++ND+LDISKIE+GK+ L + +L + V+ S+++ EK Sbjct: 885 LLNCANQIEVSSHHLLGLLNDILDISKIEAGKIELSEDSFALSKLVNSVESIIRPRCMEK 944 Query: 683 RILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----V 737 I + + AD ++Q+ +N+L NA FTP G+I+ + Sbjct: 945 NIAFNVAVEGIATAHLKADSLRLRQVLINLLGNAAKFTPELGEILFRVRQEDRRRGERLI 1004 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V+D GVG+ L+ +PF Q GTGLGL ++K+++ G + ST Sbjct: 1005 SFLVQDNGVGIAEETLKTLFEPFEQGSTHIARAYGGTGLGLSISKSIIKHMGGDIAVTST 1064 Query: 798 PAKGTLIEIIFPL 810 P KG+ + L Sbjct: 1065 PGKGSAFSFLLWL 1077 >gi|297520345|ref|ZP_06938731.1| hybrid sensory histidine kinase TorS [Escherichia coli OP50] Length = 619 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 379 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 434 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 435 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 491 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 492 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 549 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 550 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 605 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 606 RLPLRVATAP 615 >gi|325678879|ref|ZP_08158477.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Ruminococcus albus 8] gi|324109383|gb|EGC03601.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Ruminococcus albus 8] Length = 405 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 85/256 (33%), Positives = 142/256 (55%), Gaps = 20/256 (7%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y + +I+E K E +++ K+ ++F++ SHEIRTP+ +II + + + + Sbjct: 7 YRAALREITELKGELSRM-------RKKYETVTEFMSHTSHEIRTPMNSIISLASIGEEE 59 Query: 614 RFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 +G R + EY I S L+I+N++LD++KIESG + L+ EP SL E+++E+I Sbjct: 60 CYG-----RAVGEYFKNIRESAEYQLEILNEVLDMAKIESGSVTLYPEPYSL-ESLAESI 113 Query: 673 S-LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI--IIS 728 S ++ +K+I R F + ++ D ++QI LN+LSNA FTP G++ I+S Sbjct: 114 SAIITPMMEQKKIDFRFEFHDIFADTLVVDKLRLRQIFLNLLSNAAKFTPERGRVELIVS 173 Query: 729 TTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 S +V + V+D G+GM+ ++K PF Q S +GTGLGLP+AK + + Sbjct: 174 QLAASGGKVRTVFTVKDNGIGMSREFIDKMFTPFAQERTSSTAEIQGTGLGLPIAKNLTE 233 Query: 787 ANMGKFYIFSTPAKGT 802 G+ + S GT Sbjct: 234 IMGGEMRVTSQLGVGT 249 >gi|197336284|ref|YP_002156881.1| signal transduction histidine-protein kinase BarA [Vibrio fischeri MJ11] gi|197317774|gb|ACH67221.1| signal transduction histidine-protein kinase BarA [Vibrio fischeri MJ11] Length = 931 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 135/251 (53%), Gaps = 8/251 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ Q + +Y Sbjct: 275 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFT----RQMLKTSLSENQQDYLQT 330 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P +++ E +SL+ A+EK + I Sbjct: 331 IERSANNLLTIINDILDFSKLEAGKLLLENLPFDFQDSLDEVVSLLAPSAHEKGLEITLK 390 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTG 745 +P ++ D ++Q+ N++ NAI FT G I + H +++ V L+ VRDTG Sbjct: 391 IDQRVPSGLIGDPLRIQQVLNNLVGNAIKFTEKGNIDISVELKHLADDYVDLQFVVRDTG 450 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G++ + + + F Q S R GTGLGL + + ++ G+ + S +G+ Sbjct: 451 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLISQMGGEIGLSSRLHQGSTFW 510 Query: 806 IIFPLYDTSHP 816 ++ T P Sbjct: 511 FTIRMHPTDLP 521 >gi|167746498|ref|ZP_02418625.1| hypothetical protein ANACAC_01208 [Anaerostipes caccae DSM 14662] gi|167653458|gb|EDR97587.1| hypothetical protein ANACAC_01208 [Anaerostipes caccae DSM 14662] Length = 1315 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 85/264 (32%), Positives = 137/264 (51%), Gaps = 18/264 (6%) Query: 555 SLTMHDISEW----KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 L D++E +Q K +L HA AE+ + KSDFL+ +SH+IRTP+ AI+G + + Sbjct: 885 CLVRADVTEMLTAERQAKKRLEHALASAEEANKAKSDFLSAMSHDIRTPMNAIMGMT-TL 943 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + G + R Y + I+ S +L ++ND+LD+SKIE ++ L+ VS+ + + + Sbjct: 944 ASAYLGD--DERVAGYLDKIEVSSRHLLSLINDILDMSKIERAQITLNLSKVSIPKLLDQ 1001 Query: 671 AISLVQLYANEKRIL--IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 ++ A E + IR N+ D + QI +N+LSNA+ FT GG + + Sbjct: 1002 LSVMILSQAEEAGLTLSIRAEGVNH-EDFYGDPLRINQILINLLSNAVKFTNKGGMVELL 1060 Query: 729 TTHTSNEEVILR------VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 E R VRDTG+GM + K +PF + N+ I EGTGLGL + K Sbjct: 1061 AEEVETEGSAGRVSYHFTVRDTGIGMPEEFVSKIFEPFSRSGNAAHI--EGTGLGLSITK 1118 Query: 783 AMVDANMGKFYIFSTPAKGTLIEI 806 ++D GK + S +G++ + Sbjct: 1119 GLIDLMGGKISVESWINEGSVFRV 1142 >gi|281358214|ref|ZP_06244697.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] gi|281315304|gb|EFA99334.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] Length = 1131 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 84/249 (33%), Positives = 138/249 (55%), Gaps = 10/249 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI + + KLS A + A + KS FLA +SHEIRTPL A+IG S+++++ R + Sbjct: 738 DIFRQVEVERKLSRALEQARLAAQAKSTFLATMSHEIRTPLNAVIGLSDLLRSPR---IS 794 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + + ++ I+ SG +L ++ND+LD+SKIE+ KM L PVSL + +SE + A Sbjct: 795 DAQRVAFSEAINTSGKALLQLINDVLDLSKIEAMKMELRPGPVSLTQLLSEVHQIFAQSA 854 Query: 680 NEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNE 735 +K + P++L D V+Q+ LN++ NA+ FT G + + T + Sbjct: 855 ADKGLEFEFVPPEPEPPKLLLDEVRVRQVLLNLIGNAVKFTTRGFVKLECALGFNRTPDC 914 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPN--SQQIRGEGTGLGLPLAKAMVDANMGKFY 793 EV++ V D+GVG+ + +PF Q N S+ G G+GLGL ++K +++ G Sbjct: 915 EVLITVADSGVGIDPEFMAHLFEPFRQAVNADSRSFEG-GSGLGLAISKRLIEQMNGTLD 973 Query: 794 IFSTPAKGT 802 + S+ GT Sbjct: 974 VESSLGVGT 982 >gi|312883344|ref|ZP_07743070.1| sensor histidine kinase LuxQ [Vibrio caribbenthicus ATCC BAA-2122] gi|309368960|gb|EFP96486.1| sensor histidine kinase LuxQ [Vibrio caribbenthicus ATCC BAA-2122] Length = 848 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 83/265 (31%), Positives = 144/265 (54%), Gaps = 13/265 (4%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ + + + A+K AE + +++DFLAR+SHE+RTPL I+G ++++K G + Sbjct: 448 QDITSFVMAEKESDEARKEAEASAKNQADFLARMSHELRTPLNGIMGVAQLLK----GRM 503 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + IE + SG +L ++ND+LD SKIE N+ L + + Sbjct: 504 VDKQDIEKMEVLCSSGEHLLAVLNDILDFSKIEQSSFNIEGAKFHLSDLGYSIEKVFGPI 563 Query: 679 ANEKRIL--IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 EK ++ +R++ ++I + +D + Q+ N++SNA+ FT G++++S +++ E Sbjct: 564 CFEKGLMFELRSNIEDDI-WVFSDQVRLNQVIYNLVSNAVKFTHE-GEVVLSLSYSQGSE 621 Query: 737 ---VILRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + + V DTG+G+ N LE PF Q P++ QI G G+GLGL + +++V GK Sbjct: 622 FSQLHIEVSDTGIGIKNERLEAIFDPFVQAGPDTTQIYG-GSGLGLAIVQSLVTTMGGKV 680 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHPH 817 + S GT I P+ TS H Sbjct: 681 GVESVYGSGTRFFITVPIQLTSSDH 705 >gi|260365946|ref|ZP_05778436.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] gi|308113209|gb|EFO50749.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] Length = 742 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 87/253 (34%), Positives = 137/253 (54%), Gaps = 12/253 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 86 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQ-TDYLQ 140 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L+I+ND+LD SK+E+GK+ L P E++ E I+L A+EK + I Sbjct: 141 TIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITL 200 Query: 689 SFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRD 743 I P ++ D ++QI N++ N+I FT G I +S S E+ VRD Sbjct: 201 KVDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGN-IDVSVEMRSQAGDSVELQFMVRD 259 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 260 TGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGST 319 Query: 804 IEIIFPLYDTSHP 816 L T P Sbjct: 320 FWFTLRLNSTEMP 332 >gi|260223386|emb|CBA33901.1| hypothetical protein Csp_B21350 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 813 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 130/235 (55%), Gaps = 16/235 (6%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FL +HE+RTP+ +I GFSE++ ++F P R + I R L++ ++N+L Sbjct: 589 KSEFLTAAAHELRTPMVSIFGFSELLTRRKFTP---ERQTDMLQTIHRQSGLLVKMLNEL 645 Query: 645 LDISKIES-GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP--RILADL 701 LD+++IES G +++ LDE V I + L ++ +L + +P ++L D Sbjct: 646 LDLARIESRGGLDMQINAHPLDETVQYCIKGLMLKDTDRPVL-----HDTLPSLQVLMDP 700 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV---ILRVRDTGVGMTNYELEKAMK 758 ++Q N+L+NA ++P GG + +S +E V ++ VRD G+GMT +LE+A + Sbjct: 701 EKMQQALTNLLANAFKYSPQGGDVSLSVRTEEDEGVRYAVIDVRDQGIGMTPEQLERAFE 760 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 F + S I GTGLGL L K + + + G+ + ST +GT + PL + Sbjct: 761 RFYRADASGNI--PGTGLGLSLVKEIAELHKGRATMQSTFGEGTTASLWIPLAEA 813 >gi|168263777|ref|ZP_02685750.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194443927|ref|YP_002040646.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194402590|gb|ACF62812.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|205347616|gb|EDZ34247.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 920 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 17/256 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L+ AKK AE+ + KS L +SHE+RTP+ ++G E+++ P IE Sbjct: 377 ERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQT-------TPLNIE 429 Query: 626 YANYIDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 D + N +L I+N+LLD S+IESG LH E +L + +A+ +Q A K Sbjct: 430 QQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSK 489 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ +RT ++P D ++QI +N+L NA+ FT +GG I T E++I V Sbjct: 490 KLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG--IRLTVKRHEEQLIFLV 547 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G G+ + + F Q + Q GTG+GL +A ++ G + S P G Sbjct: 548 SDSGKGIEIQQQSQIFTAFYQADTNSQ----GTGIGLTIASSLAKMMGGNLTLKSVPGVG 603 Query: 802 TLIEIIFPLYDTSHPH 817 T + ++ PL + P Sbjct: 604 TCVSLVLPLQEYQPPQ 619 >gi|77460196|ref|YP_349703.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens Pf0-1] gi|77384199|gb|ABA75712.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens Pf0-1] Length = 1214 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 85/258 (32%), Positives = 143/258 (55%), Gaps = 11/258 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DISE ++ ++L AK+ A+ + KS FLA +SHEIRTP+ A+IG E+ + Sbjct: 692 DISERRELLDELRAAKERADDANRAKSTFLATMSHEIRTPMNAVIGMLELTLKRMDQTHP 751 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + IE A + S +L ++ D+LDI++IESG+++L E ++L + V + + + A Sbjct: 752 DRSGIETAYH---SAKDLLGLIGDILDIARIESGRLSLTPERINLIDTVGSVVRIFEGLA 808 Query: 680 NEKRILIRTSFAN---NIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE 735 +K++ + S + N+ L LR KQ+ N++SNAI FT +G +I + T + Sbjct: 809 RQKQLSLAVSVSPPELNVDVHLDPLR-FKQVLSNLISNAIKFTEAGHIRITLDVLPTDDP 867 Query: 736 E---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 E V L V+D+G+G+T + + +PF Q N Q G GLGL +++ + + GK Sbjct: 868 ERSMVQLTVQDSGIGITTQDQSRLFEPFAQAANGGQRTFSGAGLGLVISRNLCEMMGGKL 927 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S P GT + + P+ Sbjct: 928 RLSSLPGIGTQVSVSLPV 945 >gi|16764742|ref|NP_460357.1| sensor kinase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167995025|ref|ZP_02576115.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|16419913|gb|AAL20316.1| secretion system regulator: Sensor component [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205327213|gb|EDZ13977.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|267993280|gb|ACY88165.1| sensor kinase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157927|emb|CBW17422.1| putative two-component sensor kinase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912377|dbj|BAJ36351.1| sensor kinase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224018|gb|EFX49081.1| Secretion system regulator: Sensor component [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|332988279|gb|AEF07262.1| sensor kinase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 920 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 17/256 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L+ AKK AE+ + KS L +SHE+RTP+ ++G E+++ P IE Sbjct: 377 ERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQT-------TPLNIE 429 Query: 626 YANYIDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 D + N +L I+N+LLD S+IESG LH E +L + +A+ +Q A K Sbjct: 430 QQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSK 489 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ +RT ++P D ++QI +N+L NA+ FT +GG I T E++I V Sbjct: 490 KLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG--IRLTVKRHEEQLIFLV 547 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G G+ + + F Q + Q GTG+GL +A ++ G + S P G Sbjct: 548 SDSGKGIEIQQQSQIFTAFYQADTNSQ----GTGIGLTIASSLAKMMGGNLTLKSVPGVG 603 Query: 802 TLIEIIFPLYDTSHPH 817 T + ++ PL + P Sbjct: 604 TCVSLVLPLQEYQPPQ 619 >gi|109896835|ref|YP_660090.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] gi|109699116|gb|ABG39036.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] Length = 1045 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 144/249 (57%), Gaps = 18/249 (7%) Query: 563 EWKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E +E+N +L A+K A S+ KS FLA +SHEIRTPL AI+GFS+ ++ F + Sbjct: 409 ELVEEQNVRLDIARKEAVAASNVKSQFLANMSHEIRTPLNAILGFSKELQQGDFS--ADK 466 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 R + N I+ + + ++ IVND+LD+SKIE+GK+ ++ P S++E + E I ++ A+ Sbjct: 467 R--DQINIINAAADNLMTIVNDVLDVSKIEAGKLQINSHPFSINELLEEMIGVMAKSAHL 524 Query: 682 KRILIRTSFANNIP----RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-- 735 K + F +I +++ D ++QI N+L NA+ FT + G I ++ + E Sbjct: 525 KGL----EFVYDIEPLPLKLIGDSYRIRQILNNLLGNALKFTDT-GHIGLAASGKVLEHG 579 Query: 736 --EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E+ +++ DTG+G++ + K F Q+ ++ +GTGLGL + K +V G+ Sbjct: 580 IFELNIKIEDTGIGISREDKRKLFTAFSQVDDALNRSYQGTGLGLVICKELVKLMHGQLS 639 Query: 794 IFSTPAKGT 802 + S+P +G+ Sbjct: 640 LQSSPGQGS 648 >gi|209774098|gb|ACI85361.1| sensor protein torS [Escherichia coli] gi|320642985|gb|EFX12186.1| hybrid sensory histidine kinase TorS [Escherichia coli O157:H- str. 493-89] gi|320648443|gb|EFX17098.1| hybrid sensory histidine kinase TorS [Escherichia coli O157:H- str. H 2687] Length = 904 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 136/250 (54%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT GQI++ + T E+ ++ V D+G Sbjct: 535 TAIADDVPTALMGDPRRIRQVITNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFIQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|168240904|ref|ZP_02665836.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194447656|ref|YP_002045397.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|200389522|ref|ZP_03216133.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|194405960|gb|ACF66179.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|199601967|gb|EDZ00513.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205339630|gb|EDZ26394.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 920 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 17/256 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L+ AKK AE+ + KS L +SHE+RTP+ ++G E+++ P IE Sbjct: 377 ERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQT-------TPLNIE 429 Query: 626 YANYIDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 D + N +L I+N+LLD S+IESG LH E +L + +A+ +Q A K Sbjct: 430 QQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSK 489 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ +RT ++P D ++QI +N+L NA+ FT +GG I T E++I V Sbjct: 490 KLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG--IRLTVKRHEEQLIFLV 547 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G G+ + + F Q + Q GTG+GL +A ++ G + S P G Sbjct: 548 SDSGKGIEIQQQSQIFTAFYQADTNSQ----GTGIGLTIASSLAKMMGGNLTLKSVPGVG 603 Query: 802 TLIEIIFPLYDTSHPH 817 T + ++ PL + P Sbjct: 604 TCVSLVLPLQEYQPPQ 619 >gi|84623382|ref|YP_450754.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84367322|dbj|BAE68480.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 1191 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 131/243 (53%), Gaps = 10/243 (4%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S K+ FLA + HE+RTP+T ++G SE++ PL + R YA+ I Sbjct: 799 HKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQT---PL-DGRQQGYASAIQL 854 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 +G +L +VND LD+++IE+GK+ L + L + V + LV+ A +K++ + + Sbjct: 855 AGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVAELVRPSAEQKQLAFHCALDD 914 Query: 693 NIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGM 748 +P L D V+QI LN+L NA+ FT G +I HT + + + VRDTG GM Sbjct: 915 ALPPALRGDASRVQQILLNLLFNAVKFTERGSVHLRIAALPQHT-QQGIRVEVRDTGPGM 973 Query: 749 TNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + + + F Q + + R G+GLGL + + + A G + S +G + Sbjct: 974 SAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGSVTVSSELGQGACFVVE 1033 Query: 808 FPL 810 PL Sbjct: 1034 LPL 1036 >gi|269139357|ref|YP_003296058.1| sensory histidine kinase in two-component regulatory system with AtoC [Edwardsiella tarda EIB202] gi|267985018|gb|ACY84847.1| sensory histidine kinase in two-component regulatory system with AtoC [Edwardsiella tarda EIB202] gi|304559262|gb|ADM41926.1| Sensory histidine kinase AtoS [Edwardsiella tarda FL6-60] Length = 590 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 91/365 (24%), Positives = 176/365 (48%), Gaps = 44/365 (12%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--------NTPSV 508 I+E +DG+ I+R G + + N A + GY ++++ +P+ +T + Sbjct: 249 IIENAADGVIAIDRLGAVTTINPAAEAITGYTRDELVGQPYAALFSDSHFASPVLDTLAH 308 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTK----EEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 +L + +S R +I++ +++ +L+ +I FS D++ Sbjct: 309 GTAHLAQEVSFPARHRTIEISVTTSRIHNPHGELMGALVI-----FS--------DLTAR 355 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ + +L+ +++A + +A V+HE+R PLTAI G+ ++I+ Q P + Sbjct: 356 KETQRRLAQTERLATL-----GELMAGVAHEVRNPLTAIRGYVQIIRQQTT----QPAHQ 406 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EY + + + + + ++ LLD S+ + ++ VSL+ + EA+ LVQ + RI Sbjct: 407 EYLSVVLKEIDSINKVIQQLLDFSRPRQSQ----WQQVSLNALIDEALILVQTSGVQARI 462 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + +P I+AD +KQ+ LNIL NA+ + G+I I T + + + + D+ Sbjct: 463 AFHCALDRRLPAIVADRELLKQVLLNILINAVQAISARGEIRIRTWQPAPAQQAVAIEDS 522 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G G+ +K PF + GTGLGL L++ +++A+ G + STP G+ Sbjct: 523 GCGIDIALQQKIFDPFF------TTKASGTGLGLALSQRIINAHRGDIDVVSTPGGGSTF 576 Query: 805 EIIFP 809 + P Sbjct: 577 TLTLP 581 >gi|229135423|ref|ZP_04264210.1| hypothetical protein bcere0014_43180 [Bacillus cereus BDRD-ST196] gi|228647984|gb|EEL04032.1| hypothetical protein bcere0014_43180 [Bacillus cereus BDRD-ST196] Length = 545 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 101/376 (26%), Positives = 183/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ L + + Sbjct: 198 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEEYLDRLY---------- 247 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 + + TEI+ L +E+I + K K + L + I++ F Sbjct: 248 YESFHHTEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 302 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 303 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 346 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + E + + Sbjct: 347 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKELLEDIHM 405 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + + ++ D +KQI +N+++NAI +TP+GG + + Sbjct: 406 VLDNKAGEKEISLQVNALKRVS-VIGDPGRLKQIFINLINNAIVYTPAGGVVSVELAEDK 464 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 465 YNAYI-KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTIT 523 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 524 VDSEVGEGTTFTVVLP 539 >gi|229169314|ref|ZP_04297024.1| hypothetical protein bcere0007_42640 [Bacillus cereus AH621] gi|228614077|gb|EEK71192.1| hypothetical protein bcere0007_42640 [Bacillus cereus AH621] Length = 545 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 101/376 (26%), Positives = 183/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ L + + Sbjct: 198 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEEYLDRLY---------- 247 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 + + TEI+ L +E+I + K K + L + I++ F Sbjct: 248 YESFHHTEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 302 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 303 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 346 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + E + + Sbjct: 347 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKELLEDIHM 405 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + + ++ D +KQI +N+++NAI +TP+GG + + Sbjct: 406 VLDNKAGEKEISLQVNALKRVS-VIGDPGRLKQIFINLINNAIVYTPAGGVVSVELAEDK 464 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 465 YNAYI-KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTIT 523 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 524 VDSEVGEGTTFTVVLP 539 >gi|254502891|ref|ZP_05115042.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Labrenzia alexandrii DFL-11] gi|222438962|gb|EEE45641.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Labrenzia alexandrii DFL-11] Length = 807 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 79/270 (29%), Positives = 135/270 (50%), Gaps = 14/270 (5%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D++E + + +L A+ AE + KS FLA VSHEIRTPL ++G + ++++ R Sbjct: 265 VLRDVTERRLIEEELLAARHSAETSNEAKSRFLATVSHEIRTPLNGVLGMAALLRDTRL- 323 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 Y ++ SG +L +++++LD SK+E+GK+++H P+ + + L+ Sbjct: 324 ---TKEQSAYIKALETSGETLLLLIDEVLDFSKVEAGKLDIHAAPIKVGALAESVVELLA 380 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A+ K + I T + +P + D V+QI N++ N + FT GG + + N Sbjct: 381 PKAHAKHLEIGTLIDSRLPEHVTLDATRVRQILFNLIGNGVKFTDDGG-VAVELHGRPNL 439 Query: 736 E----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 E + L VRDTG+G E E+ + F Q+ + + GTGLGL +A+ + G Sbjct: 440 EGGSFLDLVVRDTGIGFAADEAERLFQEFEQVDHGPARKFGGTGLGLAIAQRLAHLMGGG 499 Query: 792 FYIFSTPAKGTLIEIIFP----LYDTSHPH 817 G L E+ P L +T+ P Sbjct: 500 ISARPASEGGALFEVSLPIPEDLTETTDPR 529 >gi|310640016|ref|YP_003944774.1| sensor protein [Paenibacillus polymyxa SC2] gi|309244966|gb|ADO54533.1| Sensor protein [Paenibacillus polymyxa SC2] Length = 481 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 84/259 (32%), Positives = 140/259 (54%), Gaps = 15/259 (5%) Query: 566 QEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 ++++KL AK I E+ S +KSDF+A +SHE+RTPL +II +++I N++ L Sbjct: 208 EQRDKLQKAKVILEERAKQLMMASQYKSDFMATMSHELRTPLNSIINLAQII-NEQGKEL 266 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 +Y++ I SG+ +L ++ND+LD+SK+E+G M + EPVS+ E + ++ Sbjct: 267 DEDELYQYSDLIYASGHDLLQLINDILDLSKVEAGHMEIVSEPVSVREIAQGMMMHFEVT 326 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHT---- 732 A +K + +IP I +D + V+QI N+LSNA FT G ++ IST H Sbjct: 327 AKDKNLEFNLKVHEHIPDEIRSDSKRVQQILRNLLSNAFKFTHKGRVLLEISTQHLDRKG 386 Query: 733 -SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + V+ V+DTG+G++ + + F Q S + GTGLGL +++ G Sbjct: 387 QEGDWVVFAVKDTGIGISKLQQHVIFEAFQQANGSINRKYGGTGLGLSISRDFSRLLGGF 446 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + S KG+ + P+ Sbjct: 447 IRLESEEGKGSTFSLYLPM 465 >gi|58581450|ref|YP_200466.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58426044|gb|AAW75081.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 1210 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 131/243 (53%), Gaps = 10/243 (4%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S K+ FLA + HE+RTP+T ++G SE++ PL + R YA+ I Sbjct: 818 HKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQT---PL-DGRQQGYASAIQL 873 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 +G +L +VND LD+++IE+GK+ L + L + V + LV+ A +K++ + + Sbjct: 874 AGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVAELVRPSAEQKQLAFHCALDD 933 Query: 693 NIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGM 748 +P L D V+QI LN+L NA+ FT G +I HT + + + VRDTG GM Sbjct: 934 ALPPALRGDASRVQQILLNLLFNAVKFTERGSVHLRIAALPQHT-QQGIRVEVRDTGPGM 992 Query: 749 TNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + + + F Q + + R G+GLGL + + + A G + S +G + Sbjct: 993 SAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGSVTVSSELGQGACFVVE 1052 Query: 808 FPL 810 PL Sbjct: 1053 LPL 1055 >gi|225568760|ref|ZP_03777785.1| hypothetical protein CLOHYLEM_04839 [Clostridium hylemonae DSM 15053] gi|225162259|gb|EEG74878.1| hypothetical protein CLOHYLEM_04839 [Clostridium hylemonae DSM 15053] Length = 806 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 87/260 (33%), Positives = 130/260 (50%), Gaps = 13/260 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I + ++ K L A + AE+ KSDFL+R+SH+IRTP+ AIIG +E+ GN Sbjct: 388 IEKERRTKQILEEALEKAERTGQAKSDFLSRMSHDIRTPMNAIIGMTELA----LMNTGN 443 Query: 621 PRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 I EY I SG +L +VN++LD+SKIESG L + L E V E + ++ Sbjct: 444 EEKIKEYLKTIAGSGERLLSLVNEVLDVSKIESGTFELAEKEADLCELVDEVAEMFRVTT 503 Query: 680 NEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 + I R+LAD + QI +N+L+NA +T GG + +S EE Sbjct: 504 EKMHQTFVVHVEKEIHARVLADAGRINQILVNVLANASKYTEEGGMLSLSLRELKKEENQ 563 Query: 737 ---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 V D G+GM +E +PF + +S+ + GTGLG+ + + +V G Sbjct: 564 VGTYQFTVEDNGIGMKPEYVEHIFEPFSRADDSRISKIAGTGLGMTIVRNLVSMMDGDIQ 623 Query: 794 IFSTPAKGTLIEIIFPLYDT 813 + S KG+ + I LY T Sbjct: 624 VESEYGKGS--KFIITLYLT 641 >gi|217037911|gb|ACJ76427.1| hybrid sensor kinase RscS [Aliivibrio fischeri] Length = 943 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 109/385 (28%), Positives = 188/385 (48%), Gaps = 37/385 (9%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + E E +L + E D I I++++ + N++ S L G +EDI K Sbjct: 269 RSEKEKTKLALVAEYAHDAIFILDKQSKLTWINQSYSVLSGNTLEDIKGKDL-------- 320 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL-------------LSLRIIIKKLPFSS 552 PSV+ L +I ++ L+ + G++ +L +S+ I K Sbjct: 321 PSVLQ--LDKIQHANIFTLLQSLKTGTSVSFELTNNHKDGTLYWIDVSVTPIFKPNGNIM 378 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 Y + DI++ K+ ++KL A A+ + KS FLA +SHE+RTPL I+G +++I++ Sbjct: 379 HYVVVERDITKKKELEDKLIKAADKADVSNKAKSTFLATMSHELRTPLNGILGMAQIIES 438 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + + + + SG+ +L ++ND+LD SKIE K+ L+ ++ + + I Sbjct: 439 N----IKDEEQHKQIKVLLESGDHLLSLLNDILDFSKIEQNKLELNHASFYFNDVI-DPI 493 Query: 673 SLVQLYANEKRILIRTSFANNIPR---ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 + L E + L + NNI L D ++QI N++SNA+ FT G I ++ Sbjct: 494 ANTYLSICEDKGL-QFIINNNINEKTIFLGDKPRIRQIIFNLISNAVKFTHKGS-ITLNF 551 Query: 730 THT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 +HT + V ++V+DTG+G+ L+ +PF Q S + GTGLGL + K + Sbjct: 552 SHTLTPKGEQAVQIKVQDTGIGIRKKRLKHIFEPFIQAETSTTRQYGGTGLGLTIVKQLT 611 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810 D G + S+ KGT ++ PL Sbjct: 612 DTMKGYISVNSSEGKGTCFTLVLPL 636 >gi|197263365|ref|ZP_03163439.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197241620|gb|EDY24240.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 920 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 17/256 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L+ AKK AE+ + KS L +SHE+RTP+ ++G E+++ P IE Sbjct: 377 ERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQT-------TPLNIE 429 Query: 626 YANYIDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 D + N +L I+N+LLD S+IESG LH E +L + +A+ +Q A K Sbjct: 430 QQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSK 489 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ +RT ++P D ++QI +N+L NA+ FT +GG I T E++I V Sbjct: 490 KLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG--IRLTVKRHEEQLIFLV 547 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G G+ + + F Q + Q GTG+GL +A ++ G + S P G Sbjct: 548 SDSGKGIEIQQQSQIFTAFYQADTNSQ----GTGIGLTIASSLAKMMGGNLTLKSVPGVG 603 Query: 802 TLIEIIFPLYDTSHPH 817 T + ++ PL + P Sbjct: 604 TCVSLVLPLQEYQPPQ 619 >gi|209774104|gb|ACI85364.1| sensor protein torS [Escherichia coli] Length = 904 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 136/250 (54%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT GQI++ + T E+ ++ V D+G Sbjct: 535 TAIADDVPTALMGDPRRIRQVITNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFIQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|152993487|ref|YP_001359208.1| two-component sensor histidine kinase/response regulator [Sulfurovum sp. NBC37-1] gi|151425348|dbj|BAF72851.1| two-component sensor histidine kinase/response regulator [Sulfurovum sp. NBC37-1] Length = 1065 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 129/245 (52%), Gaps = 16/245 (6%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K IA + + KS FLA +SHEIRTPL I+GF+E++++ N E+ + ID+S Sbjct: 405 KLIALQANEAKSLFLANMSHEIRTPLNGIVGFTEILRSTDL----NDEQREFLSIIDKSS 460 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY---ANEKRILIRTSFA 691 +L I+N++LD+SKIES N+ E V D A E S V+ Y A EK I + Sbjct: 461 ENLLSIINNILDLSKIESN--NIEIENVVFD-AAEEFESAVETYAVGAAEKNIDLNFYMD 517 Query: 692 NNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTG 745 I P++ D +K+I +N+LSNAI FT GG++ + +E+ + V+D G Sbjct: 518 PTINPKLKGDPTKIKEILINLLSNAIKFTSYGGEVNLEIHQVQDEDDRMPRIKFSVQDNG 577 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +GMT + E+ F Q S + GTGLGL ++ V+ GK + S +GT Sbjct: 578 IGMTQDQQERIFDAFSQADVSVTRKYGGTGLGLTISSQFVELMGGKLELESAKDQGTTFF 637 Query: 806 IIFPL 810 P Sbjct: 638 FTIPF 642 >gi|261246598|emb|CBG24408.1| putative two-component sensor kinase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] Length = 920 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 17/256 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L+ AKK AE+ + KS L +SHE+RTP+ ++G E+++ P IE Sbjct: 377 ERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQT-------TPLNIE 429 Query: 626 YANYIDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 D + N +L I+N+LLD S+IESG LH E +L + +A+ +Q A K Sbjct: 430 QQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSK 489 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ +RT ++P D ++QI +N+L NA+ FT +GG I T E++I V Sbjct: 490 KLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG--IRLTVKRHEEQLIFLV 547 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G G+ + + F Q + Q GTG+GL +A ++ G + S P G Sbjct: 548 SDSGKGIEIQQQSQIFTAFYQADTNSQ----GTGIGLTIASSLAKMMGGNLTLKSVPGVG 603 Query: 802 TLIEIIFPLYDTSHPH 817 T + ++ PL + P Sbjct: 604 TCVSLVLPLQEYQPPQ 619 >gi|89901045|ref|YP_523516.1| periplasmic sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] gi|89345782|gb|ABD69985.1| periplasmic sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] Length = 1009 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 91/273 (33%), Positives = 136/273 (49%), Gaps = 19/273 (6%) Query: 557 TMHDISEWKQ--------EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 +M D++E Q +L AK AE+ +S KS+FLA +SHEIRTP+ A++G Sbjct: 232 SMQDLAELNQNLEAIVTVRTQELQQAKDAAEEATSAKSEFLANMSHEIRTPMNAVLGMLY 291 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++ P + Y+ A S +L +ND+LDISKIE+GK+++ LD + Sbjct: 292 LLLKTDLSPTQH-NYLAKAQGAAHS---LLGTINDILDISKIEAGKIDIESVEFGLDAVL 347 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIII 727 + + A +K I + +IP L D + Q+ LN+ NA+ FT GQ+ + Sbjct: 348 GQLTDAIGYQAEQKGIEFLIRYDGSIPPFLIGDPLRLGQVLLNVCGNAVKFTEQ-GQVEL 406 Query: 728 STTHTSNEEVILR----VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 TS EV L VRD+G+G+ K F Q S R GTGLGL ++K+ Sbjct: 407 GFLSTSQTEVGLTLQVYVRDSGIGIAREVQNTLFKKFTQADQSTTRRFGGTGLGLVISKS 466 Query: 784 MVDANMGKFYIF-STPAKGTLIEIIFPLYDTSH 815 +V+ G+ +I S P KGT I L + H Sbjct: 467 LVELMGGRIWIEDSQPGKGTTICFTVQLQLSEH 499 >gi|322615122|gb|EFY12045.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619965|gb|EFY16838.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622276|gb|EFY19121.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322632857|gb|EFY29601.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636652|gb|EFY33355.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322650253|gb|EFY46667.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655827|gb|EFY52129.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322665281|gb|EFY61469.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669538|gb|EFY65686.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673464|gb|EFY69566.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677392|gb|EFY73456.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679945|gb|EFY75984.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687417|gb|EFY83389.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192370|gb|EFZ77601.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198611|gb|EFZ83712.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202302|gb|EFZ87348.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208657|gb|EFZ93595.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323217634|gb|EGA02349.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323218982|gb|EGA03492.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223663|gb|EGA07973.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232659|gb|EGA16755.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240303|gb|EGA24347.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245920|gb|EGA29908.1| two component system sensor kinase SsrA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252484|gb|EGA36331.1| two component system sensor kinase SsrA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255187|gb|EGA38966.1| two component system sensor kinase SsrA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260066|gb|EGA43691.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267170|gb|EGA50655.1| two component system sensor kinase SsrA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271507|gb|EGA54928.1| two component system sensor kinase SsrA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 920 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 17/256 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L+ AKK AE+ + KS L +SHE+RTP+ ++G E+++ P IE Sbjct: 377 ERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQT-------TPLNIE 429 Query: 626 YANYIDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 D + N +L I+N+LLD S+IESG LH E +L + +A+ +Q A K Sbjct: 430 QQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSK 489 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ +RT ++P D ++QI +N+L NA+ FT +GG I T E++I V Sbjct: 490 KLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG--IRLTVKRHEEQLIFLV 547 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G G+ + + F Q + Q GTG+GL +A ++ G + S P G Sbjct: 548 SDSGKGIEIQQQSQIFTAFYQADTNSQ----GTGIGLTIASSLAKMMGGNLTLKSVPGVG 603 Query: 802 TLIEIIFPLYDTSHPH 817 T + ++ PL + P Sbjct: 604 TCVSLVLPLQEYQPPQ 619 >gi|170020606|ref|YP_001725560.1| hybrid sensory histidine kinase TorS [Escherichia coli ATCC 8739] gi|169755534|gb|ACA78233.1| multi-sensor hybrid histidine kinase [Escherichia coli ATCC 8739] Length = 904 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|167551639|ref|ZP_02345393.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205323546|gb|EDZ11385.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 920 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 17/256 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L+ AKK AE+ + KS L +SHE+RTP+ ++G E+++ P IE Sbjct: 377 ERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQT-------TPLNIE 429 Query: 626 YANYIDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 D + N +L I+N+LLD S+IESG LH E +L + +A+ +Q A K Sbjct: 430 QQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSK 489 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ +RT ++P D ++QI +N+L NA+ FT +GG I T E++I V Sbjct: 490 KLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG--IRLTVKRHEEQLIFLV 547 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G G+ + + F Q + Q GTG+GL +A ++ G + S P G Sbjct: 548 SDSGKGIEIQQQSQIFTAFYQADTNSQ----GTGIGLTIASSLAKMMGGNLTLKSVPGVG 603 Query: 802 TLIEIIFPLYDTSHPH 817 T + ++ PL + P Sbjct: 604 TCVSLVLPLQEYQPPQ 619 >gi|75812816|ref|YP_320433.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75705572|gb|ABA25244.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 720 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 126/231 (54%), Gaps = 4/231 (1%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ K + +L +++ A+ + K +FLA +SHE+R+PL I+G+S ++ ++ L Sbjct: 329 DITNHKLAEAELRQSREEAQAANRVKDEFLAVLSHELRSPLNPILGWSSLLLKRK---LS 385 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + E I R+ L +++ DLLD+S+I GK+NL+ PV L + A+ VQL A Sbjct: 386 EAKIEEGLATIHRNAQLQSELIEDLLDVSRILRGKLNLNCSPVDLTATIMGAMETVQLAA 445 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K I ++ + NI ++ D ++Q+ N+LSNA+ FTP GGQ+ I N V + Sbjct: 446 QAKSITLQAALEPNIGQVRGDATRLQQVIWNLLSNAVKFTPPGGQVNIHLEQLGN-VVQI 504 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 V DTG G+ L F Q S + G GLGL +A+ +V+ + G Sbjct: 505 TVSDTGKGIAPDFLAYIFDYFRQEDGSITRKFGGLGLGLAIARHLVELHSG 555 >gi|17988310|ref|NP_540944.1| alkaline phosphatase synthesis sensor protein phoR [Brucella melitensis bv. 1 str. 16M] gi|17984083|gb|AAL53208.1| alkaline phosphatase synthesis sensor protein phor [Brucella melitensis bv. 1 str. 16M] Length = 768 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 140/254 (55%), Gaps = 4/254 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT D+++ + + L + E K+DF+ VS+E+R+PLT IIGF+E+++ F Sbjct: 508 LTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAF 567 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L N R +EY ++I S +++L IVND+LD++ +++G M L VS+ EA+S A S V Sbjct: 568 GSL-NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRV 626 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + I + A+++ AD V+Q+ N+LSNA+++ P G I++ Sbjct: 627 SERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVAR-DGA 685 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +V+ V D G GM + L+ K F PN + G GLGL + K+ V+ + G+ I Sbjct: 686 DVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRR--RGAGLGLAIVKSFVELHGGRVEID 743 Query: 796 STPAKGTLIEIIFP 809 + +GT + FP Sbjct: 744 TGEERGTTVICRFP 757 >gi|283851963|ref|ZP_06369239.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283572687|gb|EFC20671.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 1139 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 94/364 (25%), Positives = 177/364 (48%), Gaps = 18/364 (4%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL-T 514 ++L + DG +++ G I+ +N A ++ GY +++ R + ++ L T Sbjct: 489 ALLASIRDGFVVVDDNGRIMESNPAFREMVGYSRDELGRLTYKDLTPESWHETEETILRT 548 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNK 570 + + EK ++ ++ + + + + P + Y + DI++ K + Sbjct: 549 AVDTCGFSDVFEKEY--RRRDGSVVPVALRLHRYPSRAGENYRYFAIVRDITDVKAIEAD 606 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK+ AE + KSDFLA++SH+IRTPL A+IG +E+ G L + + + + Sbjct: 607 LRQAKETAETANRAKSDFLAKMSHDIRTPLHAVIGMTELT----LGTLLSAQQRDALETV 662 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 S +L ++ND+LDIS+IE+ K+++ E L ++ + ++ A +K + + + Sbjct: 663 RESAASLLALINDILDISRIEARKLDVAREDFDLRRTLAATVRAMRPQAAQKALFLGLAI 722 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII----ISTTHTSNEEVILR--VRD 743 A +PR + D V+QI N++ NA+ FT GG + ++ + + L V D Sbjct: 723 APAVPRFVTGDEVRVRQILTNLIGNALKFTDQGGVTVSVAPMAGPDAPGDPLFLEFTVAD 782 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TGVG+ + +L + F Q S GTGLGL + + + G STP +G+ Sbjct: 783 TGVGIPSDKLASIFEMFTQANASVGKHYGGTGLGLAICRELARLMGGGIRTESTPGRGST 842 Query: 804 IEII 807 ++ Sbjct: 843 FRVV 846 >gi|237730511|ref|ZP_04560992.1| sensor protein TorS [Citrobacter sp. 30_2] gi|226906050|gb|EEH91968.1| sensor protein TorS [Citrobacter sp. 30_2] Length = 921 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 86/253 (33%), Positives = 134/253 (52%), Gaps = 25/253 (9%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP---RYIEYANY 629 A+ AEK + KS FLA +SHEIRTPL I+G ++++ + NP ++ E Sbjct: 432 QARAEAEKANQAKSAFLAAMSHEIRTPLYGILGTAQLLSD-------NPALAQHRENLRA 484 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRI 684 I SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + + Sbjct: 485 ITDSGESLLTILNDILDYSAIEAGGKNVAIGDEPFEPKPLLEST---LQLMNSRVAGRPV 541 Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 ++ FA+++P L D R ++QI N+L+NA+ FT G I+ S N + V D Sbjct: 542 VLVADFADDVPASLRGDPRRIRQIITNLLNNALRFTDRGHIILRSRCEGKNWYI--EVED 599 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG G+ +PF Q+ + RG GTGLGL ++ ++ A G+ + STP G+ Sbjct: 600 TGCGIDPARQHDIFQPFVQVSSK---RG-GTGLGLTISASLAQAMQGELSVTSTPGVGSC 655 Query: 804 IEIIFPLYDTSHP 816 ++ PL+ T+ P Sbjct: 656 FQLRLPLWATTMP 668 >gi|86133740|ref|ZP_01052322.1| two-component system sensor histidine kinase/response regulator [Polaribacter sp. MED152] gi|85820603|gb|EAQ41750.1| two-component system sensor histidine kinase/response regulator [Polaribacter sp. MED152] Length = 507 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 84/249 (33%), Positives = 134/249 (53%), Gaps = 9/249 (3%) Query: 567 EKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 EKNK L ++IA+K +S KS FLA +SHE+R PL I+G++E+I + + E Sbjct: 120 EKNKELIRLREIADKANSEKSRFLAMMSHEVRNPLNVILGYTELINKEETSLMAQ----E 175 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y YI SG + IV+D+LD+S++E+GK+ L EP+S+ + + + Q + I Sbjct: 176 YLKYITISGRNLKVIVDDILDLSRVEAGKLVLASEPMSISSIIEQIKNNYQGSHKDLDIE 235 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRV 741 + + ++N+P +L D + QI N+++N+I FTP G + + + T + +V Sbjct: 236 LEFNVSDNLPEEVLGDDVRLIQILTNLINNSIKFTPRGTVTTSVELLFSDTDKALISFKV 295 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +DTG GMT + +K + Q S G GLGL + K +VD G+ + S G Sbjct: 296 KDTGRGMTPEQADKIFDEYQQNRLSDNRMHNGVGLGLSIVKRLVDVMEGRIKVDSLKNYG 355 Query: 802 TLIEIIFPL 810 T I I P Sbjct: 356 TTISIDIPF 364 >gi|99082614|ref|YP_614768.1| histidine kinase [Ruegeria sp. TM1040] gi|99038894|gb|ABF65506.1| histidine kinase [Ruegeria sp. TM1040] Length = 761 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 84/281 (29%), Positives = 144/281 (51%), Gaps = 22/281 (7%) Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 L++I ++ SL + DI+ + +L A++ AE + KS FLA +SHEIRTP+ Sbjct: 173 LKLIDQRGHDGDIVSLAL-DITATVHYEEELRSARERAEAANRAKSAFLANMSHEIRTPM 231 Query: 601 TAIIGFSEVIKN------QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 ++G +E++ + QR YAN I SG +L I+ND+LD SKIE+ K Sbjct: 232 NGVVGMAELLSDTTLTEEQRL----------YANTIKNSGEALLVIINDVLDYSKIEADK 281 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILS 713 + LH E L+ + E + L+Q A +K + + + +P + D ++QI N++ Sbjct: 282 LALHPEAFDLEACMHEVVMLLQANARDKGLTLLVDYDLFMPTNFIGDPGRIRQILTNLIG 341 Query: 714 NAIHFTPSG--GQIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 NAI FT G + H + V+L + D+G+G+ + +++ F Q+ + Sbjct: 342 NAIKFTNEGHVTARVTGVPHPEDNTVMLHISIEDSGIGIPDDKIQHIFGEFNQVEDETNR 401 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + EGTGLGL + + ++ G+ ++ S KG+ PL Sbjct: 402 QFEGTGLGLAITERLIKLMDGEIWVESQLGKGSCFGFRLPL 442 >gi|311693679|gb|ADP96552.1| multi-sensor hybrid histidine kinase [marine bacterium HP15] Length = 957 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 86/241 (35%), Positives = 137/241 (56%), Gaps = 14/241 (5%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYAN 628 +L A+K A + S KS+FLA +SHEIRTPL IIGF+E++ PL PR ++ + Sbjct: 277 ELDFARKEALEASRIKSEFLANMSHEIRTPLNGIIGFTELLLK---SPL--PRQQRDHLS 331 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +S ++L I+ND+LD SKIE+GK+ L P L + V E + ++ A+ K + + Sbjct: 332 TIRKSSEILLTIINDILDFSKIEAGKLILDRVPFQLRDIVEEVMVMLAPAAHAKNLDLVP 391 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILR--V 741 N++P I+ D VKQ+ N+++NAI FT + G++++ + E V LR + Sbjct: 392 LVYNDVPDNIMGDPLRVKQVITNLVNNAIKFTQT-GEVVLRASLEEEEADTNRVTLRLSI 450 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+GVG++ + + F Q S + GTGLGL ++K +V+ GK + S KG Sbjct: 451 TDSGVGLSRAQQQSLFNAFSQADASTARQYGGTGLGLAISKRLVEEMGGKIGLESELGKG 510 Query: 802 T 802 + Sbjct: 511 S 511 >gi|255523785|ref|ZP_05390750.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans P7] gi|255512488|gb|EET88763.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans P7] Length = 945 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 82/251 (32%), Positives = 134/251 (53%), Gaps = 10/251 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T +DI+E + + +L AK+ AE ++ KS FLA +SHEIRTP+ I GF E+++ Sbjct: 295 TANDITEQRLAEKELYKAKEQAEAANTAKSRFLANMSHEIRTPMNGIFGFLELLQATNL- 353 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L +I A + ++L I+ND+LD SKIE+ K+ + +L ++ +A+SL+ Sbjct: 354 SLEQKEFIREAK---SASEILLHIINDILDFSKIEAKKLTMEKIKFNLRNSIEDAVSLLA 410 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A EK + + T N+P ++ D ++Q+ N++SNA+ FT S G+I + E Sbjct: 411 PKAAEKNLELYTMINPNVPEEVIGDPSRLRQVLNNLISNAVKFT-SKGEISVKVDCLKEE 469 Query: 736 EVI----LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 I V+DTG+G+ + K F Q S + GTGLGL ++ +V GK Sbjct: 470 NKIAFLNFEVKDTGIGIRKEHINTIFKSFSQADASTTRKYGGTGLGLAISSELVKMMGGK 529 Query: 792 FYIFSTPAKGT 802 + S +G+ Sbjct: 530 IQVESIVGEGS 540 >gi|188577310|ref|YP_001914239.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521762|gb|ACD59707.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 1191 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 131/243 (53%), Gaps = 10/243 (4%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S K+ FLA + HE+RTP+T ++G SE++ PL + R YA+ I Sbjct: 799 HKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQT---PL-DGRQQGYASAIQL 854 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 +G +L +VND LD+++IE+GK+ L + L + V + LV+ A +K++ + + Sbjct: 855 AGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVAELVRPSAEQKQLAFHCALDD 914 Query: 693 NIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGM 748 +P L D V+QI LN+L NA+ FT G +I HT + + + VRDTG GM Sbjct: 915 ALPPALRGDASRVQQILLNLLFNAVKFTERGSVHLRIAALPQHT-QQGIRVEVRDTGPGM 973 Query: 749 TNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + + + F Q + + R G+GLGL + + + A G + S +G + Sbjct: 974 SAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGSVTVSSELGQGACFVVE 1033 Query: 808 FPL 810 PL Sbjct: 1034 LPL 1036 >gi|56695022|ref|YP_165368.1| sensory box sensor histidine kinase/response regulator [Ruegeria pomeroyi DSS-3] gi|56676759|gb|AAV93425.1| sensory box sensor histidine kinase/response regulator [Ruegeria pomeroyi DSS-3] Length = 743 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 143/262 (54%), Gaps = 21/262 (8%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++ K + +L+ A+ AE+ + K++FLA +SHEIRTP+ ++G +E++ + Sbjct: 339 RDVTAAKAQAEELAAARVAAEEGARAKAEFLATMSHEIRTPMNGVVGMAELLSETKLS-- 396 Query: 619 GNPRYIEYANYID---RSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAI 672 IE Y+D S +L I+ND+L++S++++ KM LH F+PVS V + + Sbjct: 397 -----IEQRQYVDTIRSSSTALLAIINDILELSRLDARKMELHPVNFDPVS---CVRDTM 448 Query: 673 SLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQI--IIST 729 L++ A K + + ++P ++ D ++Q+ +N+L NAI FT GG + S Sbjct: 449 RLLKPQAQAKGLRLSLETGADVPPLVYGDDGRLRQVLINLLGNAIKFTERGGVTLRLRSE 508 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDAN 788 + L V DTG+G+ ++E+ + F Q ++ ++ G GTGLGL +++ +V Sbjct: 509 AQDPGYLLTLEVEDTGIGIAAEKIERVFERFSQADADTTRLYG-GTGLGLTISRELVALM 567 Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810 G+ + ST +G+ + PL Sbjct: 568 GGRITVDSTLGQGSCFTLCLPL 589 >gi|148547224|ref|YP_001267326.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1] gi|148511282|gb|ABQ78142.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1] Length = 1155 Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 74/258 (28%), Positives = 137/258 (53%), Gaps = 3/258 (1%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E Q + +L ++ S +KS+FLA +SHE+RTPL + + ++++ G L + Sbjct: 465 ELSQAQLELQARADDLQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENGEGNLSEEQ 524 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +++A I +GN +L+++ND+LDI+K+E+GK+ + E ++ V + Q A K Sbjct: 525 -VKFAESIYSAGNDLLNLINDILDIAKVEAGKLEVRPETTQVERLVEGLRGMFQPLAGHK 583 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + +P L D + ++QI N+LSNAI FT G Q+ ++ + + ++ V Sbjct: 584 GLAFEVKVEPQVPVTLFTDRQRLEQILKNLLSNAIKFTERG-QVSMNVSFQAGSGIVFAV 642 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RDTG+G+ + + F Q+ + R GTGLGL +++ + G+ + S+P +G Sbjct: 643 RDTGIGIAADQQQAIFGAFHQVDGTSNRRYGGTGLGLSISRDLAHLLGGQINVESSPGQG 702 Query: 802 TLIEIIFPLYDTSHPHDC 819 ++ +I P + D Sbjct: 703 SVFSLILPERYAAEAEDV 720 >gi|225175428|ref|ZP_03729423.1| integral membrane sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] gi|225169180|gb|EEG77979.1| integral membrane sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] Length = 546 Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 130/236 (55%), Gaps = 12/236 (5%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 EK + +S+FLA VSHE+RTPL+ I+ F E+++ F + R A+ + S +L Sbjct: 310 EKMNRLQSEFLASVSHELRTPLSCILAFIELLEAPAFA---HQRQQNLAD-LKSSSEKLL 365 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++VN+LLD +K+E+G + + DE V I A EK + + + +PR+ Sbjct: 366 NMVNNLLDTAKLEAGAIEPDIQEHRADEIVQGTIKAFMPLAREKSLTVTSDIEPGLPRVK 425 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQII--ISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 D+ V+Q+ +N+L NA+ FT GG+I +++ + + V+ RV DTG G++ E E Sbjct: 426 CDVERVRQVLVNLLGNAVKFTDPGGRITVRVNSEGKTQQYVVFRVEDTGAGISREEKEVI 485 Query: 757 MKPF--GQIP-NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F G +P N +Q G+GLGL L+K +++ G+ + S P +GT P Sbjct: 486 FQRFRQGAVPVNKKQ---AGSGLGLYLSKGLIEMQGGEIGLESEPGQGTAFWFRLP 538 >gi|225388288|ref|ZP_03758012.1| hypothetical protein CLOSTASPAR_02023 [Clostridium asparagiforme DSM 15981] gi|225045635|gb|EEG55881.1| hypothetical protein CLOSTASPAR_02023 [Clostridium asparagiforme DSM 15981] Length = 1111 Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 83/254 (32%), Positives = 133/254 (52%), Gaps = 10/254 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E +Q++ L A + A S KS FL+ +SH+IRTP+ AI+G + I + R R Sbjct: 580 EEEQKRQALQSALEGARAASMAKSQFLSNMSHDIRTPMNAIMGMA-AIASTRLDD--RVR 636 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 E I S +L ++ND+LD+SKIESGK++L EP + E V+ L+ A Sbjct: 637 VAECLKKISLSSQHLLSLINDILDMSKIESGKLSLREEPFNFAELVANVTELMVPQAIAA 696 Query: 683 RILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-----THTSNEE 736 ++ + S + ++ D V+Q+ LNILSNA+ +T +GG++ I + Sbjct: 697 QLEMNVSLPVLSQEEVVGDALRVRQVYLNILSNAVKYTEAGGRVQIEVWEEPGSRGGRRN 756 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 R DTG+GM+ LE +PF + +S + GTGLG+ + + +VD G + S Sbjct: 757 FFFRCTDTGIGMSGDFLEHLFQPFERAADSAD-KASGTGLGMAITRNIVDLMSGDIQVES 815 Query: 797 TPAKGTLIEIIFPL 810 P +G+ ++ PL Sbjct: 816 RPGEGSRFTVMLPL 829 >gi|170769985|ref|ZP_02904438.1| TMAO reductase system sensor TorS [Escherichia albertii TW07627] gi|170121169|gb|EDS90100.1| TMAO reductase system sensor TorS [Escherichia albertii TW07627] Length = 904 Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 132/250 (52%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPTLNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMNGRVKGRPIRLT 534 Query: 688 TSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T A+++P +L D R ++Q+ N+LSNA+ FT G I +HT ++ ++ V D+G Sbjct: 535 TEIADDVPPVLMGDPRRIRQVMTNLLSNALRFTDRGR--ITLRSHTDGKQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L +PF Q+ RG GTGLGL ++ ++ A GK S P G+ + Sbjct: 593 GIDPAKLTDIFQPFVQVSGK---RG-GTGLGLTISSSLTQAMGGKLTATSMPGTGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 HLPLRVATAP 658 >gi|317488181|ref|ZP_07946753.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA] gi|316912726|gb|EFV34263.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA] Length = 713 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 79/246 (32%), Positives = 131/246 (53%), Gaps = 8/246 (3%) Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 KI + KSDFL ++SH+IRTPL AI+G +E+ +++E + +SG Sbjct: 323 KIESARVNLKSDFLTKMSHDIRTPLNAIMGSNELALRSIDDSKTLKKHLETSR---KSGE 379 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L I+ND+LD+S+IESGKM + P +L + + I L A +K ++++ S + + Sbjct: 380 YLLSIINDMLDLSRIESGKMAMANRPFALPDLLDSIIVLQSGPAEKKGVVLKESSRHLVH 439 Query: 696 R-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTN 750 L D +KQ +N++SNA+ FTP G +++S + E + V+DTG+GM+ Sbjct: 440 ECFLGDDTRIKQCLVNLVSNAVKFTPEQGTVLVSCEELAQEGSDSRIRFTVKDTGIGMSE 499 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +++ +PF Q +S G+GLGLP+ +V G ++ S GT + PL Sbjct: 500 SFMKRLFEPFEQEQSSLTSTQIGSGLGLPIVHNLVSLMGGTVHVESAQDAGTTFVVEIPL 559 Query: 811 YDTSHP 816 P Sbjct: 560 KPLDEP 565 >gi|300949629|ref|ZP_07163615.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 116-1] gi|300957870|ref|ZP_07170046.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 175-1] gi|300315441|gb|EFJ65225.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 175-1] gi|300450960|gb|EFK14580.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 116-1] Length = 904 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TAIADDMPCALMGDSRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|119946935|ref|YP_944615.1| hybrid sensor and regulator fused [Psychromonas ingrahamii 37] gi|119865539|gb|ABM05016.1| Hpt sensor hybrid histidine kinase [Psychromonas ingrahamii 37] Length = 968 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 78/238 (32%), Positives = 128/238 (53%), Gaps = 16/238 (6%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H K+IA K S KS+FLA +SHEIRTP+ ++G +E++ R++E I Sbjct: 427 HEKEIAVKASQAKSEFLATMSHEIRTPMNGVLGMTELVLETELSS-EQRRFME---MIKS 482 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG +LDI+ND+LD SKIE+GK+ L P+ L E + ++ + A +K + + Sbjct: 483 SGFGLLDIINDILDFSKIEAGKLQLDNHPMQLQELIKHLVTSLSPLAKKKGLQLNY---- 538 Query: 693 NIPR-----ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDT 744 N+P+ +L D ++Q+ N++SNAI FT G ++ + + + +RVRD+ Sbjct: 539 NLPQEMDTWVLGDRIRLRQVLTNLISNAIKFTQRGEVLVSAVIFEQSATALSLQIRVRDS 598 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G+ +K + F Q +S GTGLGL ++K +++ G S +GT Sbjct: 599 GIGIAPENQDKIFESFSQADSSTTRNYGGTGLGLAISKQLIEMMGGSIGFSSELGQGT 656 >gi|262404766|ref|ZP_06081321.1| BarA sensory histidine kinase [Vibrio sp. RC586] gi|262349798|gb|EEY98936.1| BarA sensory histidine kinase [Vibrio sp. RC586] Length = 927 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 83/252 (32%), Positives = 137/252 (54%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQ-TDYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L I+ND+LD SK+E+GK+ L P + + E ++L A+EK + I Sbjct: 331 TIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQDILEEVVNLQATSAHEKGLEITL 390 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDT 744 IPR ++ D ++Q+ N++ N+I FT G + + ++VI VRDT Sbjct: 391 KIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRSLRDDVIDLQFMVRDT 450 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTF 510 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 511 WFTLRLHTTELP 522 >gi|323700304|ref|ZP_08112216.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323460236|gb|EGB16101.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 1049 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 132/261 (50%), Gaps = 13/261 (4%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ D SE K++++ L AK+ AE S K++FL +SHEIRTPL I+G +++ + Sbjct: 646 TLEDFSERKRDQDALRRAKEQAEAFSRSKTEFLTNMSHEIRTPLNGIMGMLQLLHSTGL- 704 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + EY+ +S +++++ D+LD+S++E+GK+ + P L E + L + Sbjct: 705 ---SREQAEYSGAALQSSRRLMNLLTDILDLSRVEAGKLVVRAVPFDLVETCRQVCDLFK 761 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---- 731 L + + + + N+P R++ D ++Q+ N+L NA FT +G I+ H Sbjct: 762 LTSAQSGVTLICELGENVPRRVIGDAIRLQQVLTNLLGNAFKFTATGS--IVMAAHRLPD 819 Query: 732 --TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + ++ V DTG G+ + +++ F Q+ R +G GLGL + + +V Sbjct: 820 GPSKGYRILFSVADTGEGIPDEKVDTLFDAFTQVSEGYTRRHQGAGLGLSICRNLVRLMG 879 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G I S GT + + P Sbjct: 880 GTMSIESEEGAGTTLYVALPF 900 >gi|238750558|ref|ZP_04612058.1| Signal transduction histidine-protein kinase barA [Yersinia rohdei ATCC 43380] gi|238711206|gb|EEQ03424.1| Signal transduction histidine-protein kinase barA [Yersinia rohdei ATCC 43380] Length = 891 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 129/237 (54%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ Q P +Y Sbjct: 248 ELGLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTR----QTLKTSLTPPQTDYLQT 303 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RS N +L I+ND+LD SK+E+ K+ L P L A+ E + L+ A+EK + + Sbjct: 304 IQRSANNLLCIINDVLDFSKLEAEKLILEHIPFPLRGALDEVVILLAHTAHEKGLELTLH 363 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV--ILRVRDTG 745 ++P +++ D ++QI N+L NAI FT G I+++ + E+V ++ + DTG Sbjct: 364 VNQDVPEQVIGDAMRLQQIITNLLGNAIKFTEQGNIDILVAVQAKTAEQVTLVVEIHDTG 423 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++ + + + F Q S R GTGLGL + + +V G +S +G+ Sbjct: 424 IGISESQQTQLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFYSQVNRGS 480 >gi|256828637|ref|YP_003157365.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577813|gb|ACU88949.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 957 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 79/278 (28%), Positives = 140/278 (50%), Gaps = 9/278 (3%) Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 LP ++ T+ D++E KQ + ++ AK AE S K++FLA +SHE+RTPL ++ Sbjct: 546 LPGTNLMISTVWDVTERKQAEQAMARAKDAAESASQAKNEFLANMSHELRTPLNGVMAMM 605 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 ++++ PL N EY + +S + +++DLLDIS+IE+GK+ + E ++ E Sbjct: 606 QLLE---MTPL-NGEQTEYVHLARKSSERLTRLLSDLLDISRIEAGKVEIREEAFAVQEL 661 Query: 668 VSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQII 726 + L A K + + S ++ PR+ D ++Q+ N++ NA+ FT G + Sbjct: 662 LQSVSELFNTSAQSKGVSLELSTDPSVPPRLKGDAARLRQVLFNLVGNALKFTDQGFVRV 721 Query: 727 ISTT----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 T ++ V DTG+G+ + + PF Q+ + R +G GLGL + + Sbjct: 722 ELTALPPRGLEQCRILFSVMDTGIGIPSEKQHDLFTPFFQVEGAYTRRYQGAGLGLAIVR 781 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 +V+ G + S +GT + + PL T D + Sbjct: 782 RLVELMGGHITLDSIFGEGTEVHVALPLGLTESEADAL 819 >gi|134056912|emb|CAK44259.1| unnamed protein product [Aspergillus niger] Length = 2262 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 84/281 (29%), Positives = 141/281 (50%), Gaps = 29/281 (10%) Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAK------KIAEKESSH-----------KSDFLA 590 L F ++ + S + +K L+ A+ K+AE E+ H KS FLA Sbjct: 1760 LLFREVRKVSATNASMVEAQKRALAQAREAEQKAKVAEAEAKHNVKLKEDAAKAKSIFLA 1819 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SH++RTP+ +IG SE++K + + EY I + +L ++ND+LD SK+ Sbjct: 1820 NISHDLRTPMNGVIGLSELLKGTKL----DREQDEYVESIRVCADTLLTLINDILDFSKL 1875 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP---RILADLRSVKQI 707 E+GKM + P+++ E +SE + ++ Y + R L + +P +L D + QI Sbjct: 1876 EAGKMKISTVPLNIRETISEVVRALR-YTHRDRGLETIEDLDKVPPELVVLGDPVRLHQI 1934 Query: 708 ALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +N+LSN+ FTP G + +S + V DTG+G++ + + +PF Q Sbjct: 1935 FMNLLSNSYKFTPKGSVTVRAKVSREGKGRVRLECSVSDTGIGISEEQKSRLFRPFSQAD 1994 Query: 765 NSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLI 804 NS G+GLGL + KA++ D G ++ ST GT + Sbjct: 1995 NSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTSGVGTTV 2035 >gi|157371505|ref|YP_001479494.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Serratia proteamaculans 568] gi|157323269|gb|ABV42366.1| integral membrane sensor hybrid histidine kinase [Serratia proteamaculans 568] Length = 957 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 87/258 (33%), Positives = 135/258 (52%), Gaps = 7/258 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 448 DVSARVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKAL-PQG 506 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N ++ S L+L I++D+LD SKIES ++ + S E ++ Sbjct: 507 VDRLV---NAMNNSSGLLLKIISDILDFSKIESEQLKIEPREFSCLEVITHIAGNYLPLV 563 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +KR+ + N+P RI D ++Q+ N+L+NAI FT +G I+ T S E Sbjct: 564 VKKRLGLYCFIEQNVPERISGDPVRLQQVLSNLLNNAIKFTDTGCIILQVCTRGSYLE-- 621 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 VRDTGVG+ E+ + PF Q+ + Q +GTGLGL + + +++ G + S P Sbjct: 622 FSVRDTGVGIPEKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLINMMDGDIAVESEP 681 Query: 799 AKGTLIEIIFPLYDTSHP 816 G+L I PL++ P Sbjct: 682 GLGSLFTIRIPLFNAQFP 699 >gi|87118652|ref|ZP_01074551.1| Multi-sensor Hybrid Histidine Kinase [Marinomonas sp. MED121] gi|86166286|gb|EAQ67552.1| Multi-sensor Hybrid Histidine Kinase [Marinomonas sp. MED121] Length = 916 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 138/249 (55%), Gaps = 14/249 (5%) Query: 577 IAEKESSH----KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 IA KE+S K+ FLA +SHE+RTPL AI+G++++++ + L N + + Y N I++ Sbjct: 277 IANKETSESNRLKTQFLANMSHEVRTPLNAILGYTQLLQKDK---LDNQQRL-YINTIEQ 332 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ--LYANEKRILIRTSF 690 S N +L I+ D+LD SKIE+GK+NL V++ E + + ++ L ++K + + Sbjct: 333 STNNLLAIIGDILDFSKIEAGKLNLEQSEVNIRELIDDVYQILSANLLTHKKPVDLIPEV 392 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTGV 746 AN +P ++ D ++QI N++ NAI FT G ++ + ++++V DTG+ Sbjct: 393 ANEVPEWLIGDAIRIRQILTNLIGNAIKFTHDGFVRTKVTLEQQRNGQPRLLVQVIDTGI 452 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L K F Q+ S + GTGLGL + K +V+ G+ + S G+ Sbjct: 453 GIPENKLNSLFKAFSQVNTSTTRQFGGTGLGLVITKKLVEQMGGEIEVNSESGVGSNFRF 512 Query: 807 IFPLYDTSH 815 L+ ++H Sbjct: 513 RINLHSSNH 521 >gi|213581536|ref|ZP_03363362.1| putative two-component sensor kinase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 809 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 17/256 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L+ AKK AE+ + KS L +SHE+RTP+ ++G E+++ P IE Sbjct: 266 ERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQT-------TPLNIE 318 Query: 626 YANYIDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 D + N +L I+N+LLD S+IESG LH E +L + +A+ +Q A K Sbjct: 319 QQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSK 378 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ +RT ++P D ++QI +N+L NA+ FT +GG I T E++I V Sbjct: 379 KLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG--IRLTVKRHEEQLIFLV 436 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G G+ + + F Q + Q GTG+GL +A ++ G + S P G Sbjct: 437 SDSGKGIEIQQQSQIFTAFYQADTNSQ----GTGIGLTIASSLAKMMGGNLTLKSVPGVG 492 Query: 802 TLIEIIFPLYDTSHPH 817 T + ++ PL + P Sbjct: 493 TCVSLVLPLQEYQPPQ 508 >gi|167855126|ref|ZP_02477898.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis 29755] gi|167853761|gb|EDS25003.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis 29755] Length = 744 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 101/385 (26%), Positives = 187/385 (48%), Gaps = 25/385 (6%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-KPF 497 D R+N ++E + L S +A+ D + N+ G L NRA+ L G +++L P Sbjct: 101 DARLNV-ELEQQAEFLRSFFDASPDLVFYRNQHGEFLGCNRAMEVLTGRSEKELLHLTPK 159 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSC 553 ++ ++ +++ ++S + T E+ S + +R K+P+ + C Sbjct: 160 DIYPKETAKLILDTDRDTLIS-NTGVTYEQWIRHSNNKLSCFEIR----KVPYYDRVNEC 214 Query: 554 YSLTM--HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + + DI+E K+ +++ EK S KS +A +SHE+RTPL IIG S ++ Sbjct: 215 HCIMGFGRDITERKR-------YQEMIEKNSRDKSTLMATISHELRTPLNGIIGLSRILL 267 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 G L + EY I+ S + I +D++D+ KI+S ++ L V + +S Sbjct: 268 E---GELSAQQR-EYLKTINISAVSLGHIFSDIIDLEKIDSRRIELFRSEVEFSQLISNI 323 Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 L A +K+I + +N+P + D + QI N+++NA+ FTPSGG+I + Sbjct: 324 SHFANLMAEQKKIKFTIQYDDNLPDFVCVDNARLSQILWNLVNNAVKFTPSGGEISLKVE 383 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 ++ ++D+G+G+ E K F Q NSQ + +G+G+GL ++K + G Sbjct: 384 RRDHDHYAFILKDSGIGIKKSEQRKIFAMFYQSENSQGKKAQGSGIGLAISKRIARLMGG 443 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSH 815 + S +G++ +I + +H Sbjct: 444 DLTVESELNQGSVFTLIIQADEANH 468 >gi|153868804|ref|ZP_01998545.1| sensory transduction histidine kinase [Beggiatoa sp. PS] gi|152074621|gb|EDN71458.1| sensory transduction histidine kinase [Beggiatoa sp. PS] Length = 655 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 103/361 (28%), Positives = 176/361 (48%), Gaps = 37/361 (10%) Query: 457 ILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP------SVM 509 IL A SD +A+I+ I++ T+ A KL + ++ + + P +V+ Sbjct: 63 ILVAESDIAVALID---IVMETDDAGLKLVDFIRNELHNSLIRLIIRTGQPGLAPENTVV 119 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569 HY D+ +K L S K ++R+ +K + D++ K + Sbjct: 120 EHY-------DINDYKDKTELTSQK--LYTTIRLALK----------SYQDLNTLKIAEQ 160 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 L AK AE + KS+FLA +SHEIRTP+ AIIGFS+++ ++ + + + I Y + Sbjct: 161 ALKQAKDKAETANRAKSEFLANMSHEIRTPMNAIIGFSDILASK----ITDKKQINYISS 216 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I + +L +++D+LD+SKIE+G++ + +E V+L + L EK I Sbjct: 217 IQTAAKSLLTLIDDILDLSKIEAGRLEIQYEEVNLQGIFIALQQVFSLKIAEKNIEFIME 276 Query: 690 FANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTG 745 + P + D ++Q+ LN++ NAI FT SG + + + E I L V D+G Sbjct: 277 IDETLPPSLFLDETRLRQMLLNLMGNAIKFTNSGYVKLCANKIDTEENYIDLTLAVEDSG 336 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ + + F Q + GTGLGL + K +V+ G+ + S+P KG+ E Sbjct: 337 IGIPAEQQTLIFESFRQQDGQSTRQYGGTGLGLTITKRLVEMMNGQISLTSSPGKGSRFE 396 Query: 806 I 806 I Sbjct: 397 I 397 >gi|187775852|ref|ZP_02798687.2| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str. EC4196] gi|188024557|ref|ZP_02997155.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str. EC4113] gi|189010261|ref|ZP_02806017.2| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str. EC4076] gi|189401974|ref|ZP_02779320.2| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str. EC4401] gi|189403035|ref|ZP_02792497.2| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str. EC4486] gi|189404265|ref|ZP_02788237.2| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str. EC4501] gi|189405993|ref|ZP_02825630.2| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str. EC508] gi|208808659|ref|ZP_03250996.1| sensor histidine kinase/response regulator TorS [Escherichia coli O157:H7 str. EC4206] gi|208816058|ref|ZP_03257237.1| sensor histidine kinase/response regulator TorS [Escherichia coli O157:H7 str. EC4045] gi|208822610|ref|ZP_03262929.1| sensor histidine kinase/response regulator TorS [Escherichia coli O157:H7 str. EC4042] gi|209396858|ref|YP_002269719.1| sensor histidine kinase/response regulator TorS [Escherichia coli O157:H7 str. EC4115] gi|217326169|ref|ZP_03442253.1| sensor histidine kinase/response regulator TorS [Escherichia coli O157:H7 str. TW14588] gi|12514260|gb|AAG55540.1|AE005293_4 sensor protein torS (regulator TorR) [Escherichia coli O157:H7 str. EDL933] gi|13360608|dbj|BAB34571.1| sensor protein torS [Escherichia coli O157:H7 str. Sakai] gi|187770408|gb|EDU34252.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str. EC4196] gi|188018115|gb|EDU56237.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str. EC4113] gi|189001171|gb|EDU70157.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str. EC4076] gi|189358204|gb|EDU76623.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str. EC4401] gi|189363312|gb|EDU81731.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str. EC4486] gi|189366555|gb|EDU84971.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str. EC4501] gi|189377093|gb|EDU95509.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str. EC508] gi|208728460|gb|EDZ78061.1| sensor histidine kinase/response regulator TorS [Escherichia coli O157:H7 str. EC4206] gi|208732706|gb|EDZ81394.1| sensor histidine kinase/response regulator TorS [Escherichia coli O157:H7 str. EC4045] gi|208738095|gb|EDZ85778.1| sensor histidine kinase/response regulator TorS [Escherichia coli O157:H7 str. EC4042] gi|209158258|gb|ACI35691.1| sensor histidine kinase/response regulator TorS [Escherichia coli O157:H7 str. EC4115] gi|209774100|gb|ACI85362.1| sensor protein torS [Escherichia coli] gi|209774102|gb|ACI85363.1| sensor protein torS [Escherichia coli] gi|209774106|gb|ACI85365.1| sensor protein torS [Escherichia coli] gi|217322390|gb|EEC30814.1| sensor histidine kinase/response regulator TorS [Escherichia coli O157:H7 str. TW14588] gi|320192509|gb|EFW67151.1| Sensor protein torS [Escherichia coli O157:H7 str. EC1212] gi|320637860|gb|EFX07652.1| hybrid sensory histidine kinase TorS [Escherichia coli O157:H7 str. G5101] gi|320653760|gb|EFX21834.1| hybrid sensory histidine kinase TorS [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|326338564|gb|EGD62391.1| Sensor protein torS [Escherichia coli O157:H7 str. 1125] gi|326347794|gb|EGD71510.1| Sensor protein torS [Escherichia coli O157:H7 str. 1044] Length = 904 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 136/250 (54%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT GQI++ + T E+ ++ V D+G Sbjct: 535 TAIADDVPTALMGDPRRIRQVITNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFIQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|189468086|ref|ZP_03016871.1| hypothetical protein BACINT_04480 [Bacteroides intestinalis DSM 17393] gi|189436350|gb|EDV05335.1| hypothetical protein BACINT_04480 [Bacteroides intestinalis DSM 17393] Length = 928 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 138/255 (54%), Gaps = 16/255 (6%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +DI+E K+ + KL AK+ AE+ KS FLA +SHEIRTPL AI+GFS ++ Sbjct: 686 YDITELKETEQKLIEAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSSLLVETE---- 741 Query: 619 GNP-RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 +P +EYA ++ + L+L +++D+LD+SKIE+G + F ++ + + +QL Sbjct: 742 -DPEEKLEYAKMVEENNELLLQLISDILDLSKIEAGTFDFKFRDFDINTLCGDLVRSMQL 800 Query: 678 YANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 LI F + +P+ I++D + Q+ N ++NAI FT + G I I ++ Sbjct: 801 RVKPGVELI---FESTLPQCVIVSDPNRLHQVVSNFINNAIKFTTT-GSIRIGYDKPDDK 856 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + + V DTG+G+ K F ++ + Q GTGLGL ++K++++ G + Sbjct: 857 HLRVYVTDTGIGIAPEACRKIFDRFIKLNSFVQ----GTGLGLSISKSIIEQLGGTIGVN 912 Query: 796 STPAKGTLIEIIFPL 810 S KG+ I PL Sbjct: 913 SELGKGSTFWFILPL 927 >gi|320102458|ref|YP_004178049.1| GAF sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] gi|319749740|gb|ADV61500.1| GAF sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] Length = 815 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 143/286 (50%), Gaps = 19/286 (6%) Query: 549 PF-SSCYSLT-MHDISEWKQE-KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 PF +C + H + + ++E + +L AK+ AE+ + KS FLA +SHEIRTP+ A+ G Sbjct: 350 PFLQTCAGIIEAHRVEQLQRETEEELRRAKQAAEEANQAKSRFLANISHEIRTPIAALCG 409 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 +SE++ + + P + I R+ +L++V+D+LD SKIE+G+M + PVS Sbjct: 410 YSEMVLEPQ---MEEPERRQTLLAIRRNSRHLLELVDDILDFSKIEAGEMTIEHCPVSPR 466 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ 724 + + ++ + A K I I IP I D ++QI LN LSNAI FT + Sbjct: 467 WILEDLLTTMGGRARSKGIAIHHRIVEPIPDTITTDPTRLRQILLNFLSNAIKFTDRDKR 526 Query: 725 III----------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 I + T H++ ++ V D G G+ L + +PF Q+ S R GT Sbjct: 527 IDLILQVEPVPASGTLHSAANRLVFTVEDQGPGIAPENLSRLFQPFWQVDGSITRRYGGT 586 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 GLGL +++ + + G + S +G+ PL P C+ Sbjct: 587 GLGLSISQRLAELLGGVIEVESEVGRGSRFRFALPLQSGVVP--CV 630 >gi|212527504|ref|XP_002143909.1| sensor histidine kinase/response regulator, putative [Penicillium marneffei ATCC 18224] gi|210073307|gb|EEA27394.1| sensor histidine kinase/response regulator, putative [Penicillium marneffei ATCC 18224] Length = 2403 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 81/248 (32%), Positives = 130/248 (52%), Gaps = 20/248 (8%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H K+ E + KS FLA VSH++RTP+ +IG SE++K + + Y I Sbjct: 1874 HNVKLKEDAARAKSVFLANVSHDLRTPMNGVIGLSELLKGTKL----DKEQDNYVESIRV 1929 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 + +L ++ND+LD SK+E+GKM + P+SL E +SE + ++ Y + R L + Sbjct: 1930 CADTLLTLINDILDFSKLEAGKMKISTVPLSLKETISEVVRALR-YTHRDRGLETIEDLD 1988 Query: 693 NIPR---ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR------D 743 +P ++ D + QI +N+LSN+ FTP G + T E RVR D Sbjct: 1989 MVPEDLVVMGDPVRLHQIFMNLLSNSYKFTPKGH---VKVTAMVVREGKGRVRLECSVSD 2045 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF-YIFSTPAKGT 802 TG+G+ + +PF Q NS G+GLGL + KA+++ +G ++ STP GT Sbjct: 2046 TGIGIPEEHKSRLFRPFSQADNSTARSYGGSGLGLSICKAIIEDVLGGLIWLDSTPGVGT 2105 Query: 803 LI--EIIF 808 + +++F Sbjct: 2106 TVTFQLVF 2113 >gi|320086127|emb|CBY95901.1| two-component sensor/regulator [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 920 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 17/256 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L+ AKK AE+ + KS L +SHE+RTP+ ++G E+++ P IE Sbjct: 377 ERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQT-------TPLNIE 429 Query: 626 YANYIDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 D + N +L I+N+LLD S+IESG LH E +L + +A+ +Q A K Sbjct: 430 QQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSK 489 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ +RT ++P D ++QI +N+L NA+ FT +GG I T E++I V Sbjct: 490 KLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG--IRLTVKRHEEQLIFLV 547 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G G+ + + F Q + Q GTG+GL +A ++ G + S P G Sbjct: 548 SDSGKGIEIQQQSQIFTAFYQADTNSQ----GTGIGLTIASSLAKMMGGNLTLKSVPGVG 603 Query: 802 TLIEIIFPLYDTSHPH 817 T + ++ PL + P Sbjct: 604 TCVSLVLPLQEYQPPQ 619 >gi|196249913|ref|ZP_03148608.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] gi|196210427|gb|EDY05191.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] Length = 518 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 105/366 (28%), Positives = 180/366 (49%), Gaps = 22/366 (6%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 R EI+ +L +++E G+ I+ G I NRA F D L +P+ Sbjct: 170 RAREIQTDRLHTLIENVGSGLLFIDHRGHIHLINRAFQTYFHLDSSDCLYRPYA------ 223 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 V+ H D+ + ++ I + T + + L I I++ F + + +EW Sbjct: 224 --DVLPHR-------DIIKLIDDIFITETAMRRHMRLTIGIERKHFDVYGAPIIGTNAEW 274 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K ++ E K DF+A VSHE++TP+T+I GF+E + + G + + + Sbjct: 275 KGIVVVFHDITELKRLEQIRK-DFVANVSHELKTPVTSIKGFAETLLD---GAMKDEEAL 330 Query: 625 E-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 E + I + + +V +LLD+SKIE L E V + E ++EA ++ + A EK+ Sbjct: 331 EHFLTIILKESERLQTLVEELLDLSKIEQHGFQLQLEDVDVAEVIAEAAAVFRQKAEEKQ 390 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 I +R + I D +KQI +N+L+NA+ +TP GQ+ + E +I V+D Sbjct: 391 IDLRVEALPGLV-IRGDRNRLKQILINLLANALAYTPEHGQVAVEAEEKEKEVLI-HVKD 448 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ E+ + + F +I ++ GTGLGL + K +V+A+ G + S +GT+ Sbjct: 449 TGIGIEEKEIPRIFERFYRIDKARSRDSGGTGLGLSIVKHLVEAHHGYITVASEVGRGTV 508 Query: 804 IEIIFP 809 I FP Sbjct: 509 FTIHFP 514 >gi|256018746|ref|ZP_05432611.1| hybrid sensory histidine kinase TorS [Shigella sp. D9] Length = 904 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|323165485|gb|EFZ51272.1| TMAO reductase sytem sensor TorS [Shigella sonnei 53G] Length = 904 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|148262094|ref|YP_001228800.1| multi-sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146395594|gb|ABQ24227.1| PAS/PAC sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] Length = 508 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 97/392 (24%), Positives = 192/392 (48%), Gaps = 38/392 (9%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +R+++ E ++ +IL+ +D + ++ +G I+++NR ++ G E++L P L+ Sbjct: 132 QRQLDEERQKMEAILQGMADLLLAVDDQGRIITSNRKAEEVLGLKREELLGMPVEEALKA 191 Query: 504 NTPSVMNHYLTEILS-LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562 + PS E+ S + LR T + + T ++ + P ++ + + Sbjct: 192 DIPS------EELPSRVVLRTTQPSLDVTYTMLCGSANIPVSSSAAPLTNASGQLIGSV- 244 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ ++L K E+E K DF++ +SH+++ P+TA++G ++++ R GP+ N Sbjct: 245 EIIRDISRL----KALEQE---KEDFVSMLSHDLKAPITAVVGSVDLVREGRLGPV-NAD 296 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 EY S ++++++ LL + K E+GKM LHF+ + + + ++ A Sbjct: 297 QREYLESSMESCAEMVEMIDTLLGVHKFEAGKMLLHFKEEAPHQLIQRTLTRYITVAKRA 356 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---- 738 +I + + N+P I AD + ++ N++SNA+ FTP GG+I +S + I Sbjct: 357 QIHLFATVDENLPTISADRATFSRLLGNLISNALKFTPEGGEIEVSAAAIEDISAIKDRI 416 Query: 739 ------------------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 + VRD+GVG+ LE F Q N + + GTGLGL Sbjct: 417 PRQSYPVEKLSGGDRFLQITVRDSGVGIPPEALEGIFDRFVQAKNRRLGKSSGTGLGLTF 476 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 + ++DA+ G + S +G+ ++FP+ + Sbjct: 477 CRKVMDAHKGYIWAESVVGQGSSFVMLFPITE 508 >gi|331676785|ref|ZP_08377481.1| TMAO reductase sytem sensor TorS [Escherichia coli H591] gi|331075474|gb|EGI46772.1| TMAO reductase sytem sensor TorS [Escherichia coli H591] Length = 914 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 432 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 487 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 488 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 544 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 545 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 602 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 603 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 658 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 659 RLPLRVATAP 668 >gi|206601972|gb|EDZ38454.1| Putative multi-sensor hybrid histidine kinase [Leptospirillum sp. Group II '5-way CG'] Length = 849 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 81/246 (32%), Positives = 125/246 (50%), Gaps = 10/246 (4%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 KL + A + KS FLA +SHE+RTPL I+G SE+++ Q +PR E N Sbjct: 182 TKLEKLIEAANAANQSKSRFLANMSHELRTPLNGIMGLSELLREQ-----ASPRQNELLN 236 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + S + DI+ +LD S++E+G+M + + + V+E +S + A +K + + Sbjct: 237 TLQGSARHLSDIIGKILDFSRLEAGRMTVSLVTFDVGQVVAETVSALLPLARQKNLPLTV 296 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR----D 743 P L D +KQI N+L NAI FT SG ++ T +++E L VR D Sbjct: 297 LMDARFPSSLRGDPFHLKQILTNLLGNAIKFTESGEVVLTITPILTSDERQLSVRFEVSD 356 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G++ E + + F Q +S R GTGLGL + + +VD GK S KG++ Sbjct: 357 TGIGISEEEKNRIFESFSQGDDSVTKRYGGTGLGLAITRQLVDLEKGKLGFLSHAGKGSI 416 Query: 804 IEIIFP 809 P Sbjct: 417 FWCTIP 422 >gi|209551534|ref|YP_002283451.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537290|gb|ACI57225.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 861 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 113/410 (27%), Positives = 194/410 (47%), Gaps = 35/410 (8%) Query: 424 FPENMPQNG--------IEPEDVDTRINKR-KMEIEVMQLCSILEATSDGIAIINREGII 474 F PQ G E D++TR N K++ E ++ S+G+A+ +G I Sbjct: 464 FATAHPQGGATWVFENLTEQVDLETRYNTLVKVQGET------IDHLSEGVAVFGPDGRI 517 Query: 475 LSTNRAVSKLFGYPVEDILRKPFT---VFLEQNTPSV-----MNHYLTEILSLDLRQTLE 526 +N A L+G + + KP T E PS + I S D + Sbjct: 518 RLSNPAFRALWG--ITETEAKPGTHIRALGEACAPSYDRPDGWKAFAELITSFDDERRSG 575 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 + TL E L + +P + + LT ++++ + + L+ + K K Sbjct: 576 QGTL-----ELFSGLVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELK 630 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 +DF+ VS+E+R+PLT IIGF+++++ Q GPL N R EY ++I S +++L +VND+L Sbjct: 631 NDFVQHVSYELRSPLTNIIGFTDLLRTQGVGPL-NERQAEYIDHISTSSSVLLTLVNDIL 689 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705 D++ +++G M L++ + L++ + + + +E + + + + I+AD + +K Sbjct: 690 DLATVDAGIMRLNYADIDLNDLLDDVSMQIADRLHESGVALEITAPAYLGSIVADPQRLK 749 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 QI L +LSNA +F+P G I + H + + V D G G++ + F Sbjct: 750 QILLKLLSNAANFSPEGTSISLE-CHREGTDFVFSVSDRGPGISPDMIATVFDRFATGAK 808 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 S + RG G GLGL + + V + G I S P KGT + P D H Sbjct: 809 SGK-RG-GAGLGLSIVDSFVSLHHGDVTIDSEPGKGTTVVCRIPSVDIPH 856 >gi|189425452|ref|YP_001952629.1| histidine kinase [Geobacter lovleyi SZ] gi|189421711|gb|ACD96109.1| histidine kinase [Geobacter lovleyi SZ] Length = 735 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 126/222 (56%), Gaps = 8/222 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHEIRTP+ AIIG +++ R +P+ Y + + +L I+ND+ Sbjct: 356 KSEFLANMSHEIRTPMNAIIGLAQLTLETRL----DPQQKSYLERLRNASTALLSIINDI 411 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703 LD SKIE+ K+ + ++L + + + ++L Q A EK + + A++IP+ ++ D Sbjct: 412 LDFSKIEAHKIEIAHLELNLADILQDGVTLFQTAAKEKGLKLSLEIADDIPQHLIGDPLR 471 Query: 704 VKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPF 760 + Q+ N++SNA+ FT G + +++VI+R V DTG+G+ + E+ +PF Sbjct: 472 LGQVLNNLISNAVKFTERGSVTVRAELADRDDQQVIIRILVSDTGIGIDKEQSERLFQPF 531 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 Q S R GTGLGL +A+ +V+ G + S P +G+ Sbjct: 532 TQADGSIVRRFGGTGLGLSIARNLVELMGGSITLSSCPDQGS 573 >gi|332711422|ref|ZP_08431354.1| PAS domain S-box protein [Lyngbya majuscula 3L] gi|332349971|gb|EGJ29579.1| PAS domain S-box protein [Lyngbya majuscula 3L] Length = 1443 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 102/386 (26%), Positives = 187/386 (48%), Gaps = 42/386 (10%) Query: 457 ILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++E+ D I + + E GIIL N+ ++ G R+ + L Q+ ++ + Sbjct: 974 LVESAGDAILMADAETGIILEANQMAEQMLGR------RRAEIIGLHQS--QIIPRERFK 1025 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMH----------DISEW 564 S +Q +E G +E+L L + +P S +L + DIS+ Sbjct: 1026 AYSQSFQQHVEA---GGVFQEELELLHQVGTTVPVEVSATTLELQGKTVVQGIFRDISDR 1082 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 KQ + L AK AE + KS+F+A +SHE+RTPL I+G++++++ + P + Sbjct: 1083 KQAEQALKQAKVDAEVANRAKSEFVANMSHELRTPLNGILGYAQILQEE---PNLSATQK 1139 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E + I +SG +L ++ND+LD+SKIE+ KM L + + + +V + A +K + Sbjct: 1140 EQLSIIQQSGQHLLTLLNDILDLSKIEAIKMELDVRDFQFPKFLEGIVEIVVISAKQKNL 1199 Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIS--------------T 729 R F + +P + D ++Q+ +N+L NA+ FT +GG T Sbjct: 1200 SFRYEFLSPLPEFVKGDEIRLRQVLMNLLGNAVKFTDTGGVTFKVGYLGCSELNVDRSLT 1259 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 +++ + DTG+G+ +L + PF Q+ N+ + + GTGLGL ++K + + Sbjct: 1260 EKQGTQKMRFVIADTGIGIPPKQLAEIFLPFHQVGNTDR-QVNGTGLGLSISKRLAELMG 1318 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSH 815 + + ST +G++ + L D S Sbjct: 1319 SELKVKSTVGQGSIFWLDLDLPDVSQ 1344 >gi|323157492|gb|EFZ43602.1| TMAO reductase sytem sensor TorS [Escherichia coli EPECa14] Length = 904 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|146312440|ref|YP_001177514.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Enterobacter sp. 638] gi|145319316|gb|ABP61463.1| integral membrane sensor hybrid histidine kinase [Enterobacter sp. 638] Length = 949 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 83/258 (32%), Positives = 133/258 (51%), Gaps = 7/258 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VERLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPSEFSPREVMNHISANYMPLV 560 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P +L D ++Q+ N+LSNAI FT G II + + + Sbjct: 561 VRKQLGLYCFIEPDVPLTLLGDPMRLQQVISNLLSNAIKFTDVG--CIILHVSRAGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +R+RDTGVG+ E+ K PF Q+ Q +GTGLGL + + ++ G + + P Sbjct: 619 IRIRDTGVGIPAKEVVKLFDPFFQVGTGVQRNFQGTGLGLAICEQLISMMDGDISVDTEP 678 Query: 799 AKGTLIEIIFPLYDTSHP 816 G+ I PLY +P Sbjct: 679 GMGSQFTIRIPLYSAQYP 696 >gi|67525289|ref|XP_660706.1| hypothetical protein AN3102.2 [Aspergillus nidulans FGSC A4] gi|40744497|gb|EAA63673.1| hypothetical protein AN3102.2 [Aspergillus nidulans FGSC A4] gi|259485950|tpe|CBF83405.1| TPA: sensor histidine kinase/response regulator, putative (AFU_orthologue; AFUA_3G12550) [Aspergillus nidulans FGSC A4] Length = 2312 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K + + H K+ E + KS FLA +SH++RTP+ +IG SE++K + + Sbjct: 1838 KVAEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELLKGTKL----DREQD 1893 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EY I + +L ++ND+LD SK+E+GKM + P+++ E +SE + ++ Y + R Sbjct: 1894 EYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIKETISEVVRALR-YTHRDRG 1952 Query: 685 LIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR- 740 L + +P +L D + QI +N+LSN+ FTP G + +S T + +R Sbjct: 1953 LETIEDLDEVPPDLVVLGDPVRLHQIFMNLLSNSYKFTPK-GSVTVSAKVTREGKGRVRL 2011 Query: 741 ---VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFS 796 V DTG+G+ + + + +PF Q +S G+GLGL + KA++ D G ++ S Sbjct: 2012 ECSVSDTGIGIPDEQKPRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDS 2071 Query: 797 TPAKGTLI 804 P GT + Sbjct: 2072 VPGAGTTV 2079 >gi|325265248|ref|ZP_08131973.1| sensor histidine kinase/response regulator [Clostridium sp. D5] gi|324029427|gb|EGB90717.1| sensor histidine kinase/response regulator [Clostridium sp. D5] Length = 852 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 86/276 (31%), Positives = 145/276 (52%), Gaps = 19/276 (6%) Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 +II L F +S+T + + N+L A+++A + S KS+FLA +SH+IRTP+ A Sbjct: 310 LIILTLIFLRYFSMT-------RCQLNELEMARQVALEASKAKSEFLANMSHDIRTPMNA 362 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I+G + + + + ++ I SG +L ++ND+LD+SKIESGK+ L E Sbjct: 363 IVGMTAIATAH----MDDREQLQNCLKKITLSGKHLLGLINDVLDMSKIESGKLTLTTEQ 418 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTP 720 +SL E V ++++Q N K+ + N + + D + Q+ LN+LSNA +T Sbjct: 419 ISLKEVVEGIVNIMQPQVNAKKQTLDIHVENILTENVWCDGIRLNQVLLNLLSNATKYTQ 478 Query: 721 SGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 GG I +S + + + + V+D G+GM+ ++K + + ++ + EG Sbjct: 479 EGGSIRLSLFEEKSLKGENYVRIHINVKDNGIGMSPDFVKKIYDSYSRADGARIHKTEGA 538 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GLG+ + K +VDA G + S P KGT I L Sbjct: 539 GLGMAITKYIVDAMEGTIDVQSEPDKGTEFHITLDL 574 >gi|300902839|ref|ZP_07120787.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 84-1] gi|301302388|ref|ZP_07208519.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 124-1] gi|300405106|gb|EFJ88644.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 84-1] gi|300842227|gb|EFK69987.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 124-1] gi|315258041|gb|EFU38009.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 85-1] Length = 904 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|187920903|ref|YP_001889935.1| integral membrane sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] gi|187719341|gb|ACD20564.1| integral membrane sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] Length = 721 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 135/246 (54%), Gaps = 6/246 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q+ A+ +AE + K +FLA +SHE+RTPL I+G+++++ +R L + R Sbjct: 243 EQDTAAEREARNLAEAANRAKGEFLANMSHELRTPLNGILGYAQIL--ERDAAL-SERQR 299 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E A+ I SG +L ++ D LD ++IE+GK+ + V L V ++ + A +KR+ Sbjct: 300 ERASSIRHSGEHLLTLIEDTLDFARIEAGKLRVEIGDVPLAGFVDVIRDIIDVKAEQKRL 359 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + P + AD R ++Q+ LN+L+NA+ FT SG + + + + + V VRD Sbjct: 360 DFICEITGDAPVGVRADERRLRQVMLNLLANAVKFTDSGC-VTLHISRSESNRVRFEVRD 418 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ + +L +PF Q+ +++ R G GLGL +++ V A G+ + S +G+ Sbjct: 419 TGIGIGHDQLNTIFEPFEQLGAAER-RAGGAGLGLAISREFVRAMGGEIEVESRIGQGST 477 Query: 804 IEIIFP 809 P Sbjct: 478 FRFELP 483 >gi|309795016|ref|ZP_07689436.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 145-7] gi|308121320|gb|EFO58582.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 145-7] Length = 904 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|301327172|ref|ZP_07220438.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 78-1] gi|300846205|gb|EFK73965.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 78-1] Length = 904 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|300823946|ref|ZP_07104069.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 119-7] gi|300523578|gb|EFK44647.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 119-7] Length = 904 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|218553582|ref|YP_002386495.1| hybrid sensory histidine kinase TorS [Escherichia coli IAI1] gi|218360350|emb|CAQ97900.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli IAI1] Length = 914 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 432 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 487 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 488 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 544 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 545 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 602 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 603 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 658 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 659 RLPLRVATAP 668 >gi|323379162|gb|ADX51430.1| multi-sensor hybrid histidine kinase [Escherichia coli KO11] Length = 914 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 432 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 487 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 488 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 544 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 545 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 602 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 603 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 658 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 659 RLPLRVATAP 668 >gi|320664373|gb|EFX31524.1| hybrid sensory histidine kinase TorS [Escherichia coli O157:H7 str. LSU-61] Length = 904 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 136/250 (54%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT GQI++ + T E+ ++ V D+G Sbjct: 535 TAIADDVPTALMGDPRRIRQVITNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFIQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|307311622|ref|ZP_07591262.1| multi-sensor hybrid histidine kinase [Escherichia coli W] gi|306908177|gb|EFN38676.1| multi-sensor hybrid histidine kinase [Escherichia coli W] gi|315060277|gb|ADT74604.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli W] Length = 899 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 417 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 472 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 473 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 529 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 530 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 587 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 588 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 643 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 644 RLPLRVATAP 653 >gi|254560907|ref|YP_003068002.1| hypothetical protein METDI2463 [Methylobacterium extorquens DM4] gi|254268185|emb|CAX24095.1| hypothetical protein METDI2463 [Methylobacterium extorquens DM4] Length = 1125 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 133/248 (53%), Gaps = 12/248 (4%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE+ S+ KS+FLA +SHEIRTPL I+G+++++ ++R + R +E I SG + Sbjct: 583 AERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDRRDHDPEDQRRLE---LIRVSGESL 639 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696 L +VND+LD+SKIE+G++ L P +L + + + +++++ A + + + ++P Sbjct: 640 LTVVNDVLDVSKIEAGQLELDPLPFALGKLIEDTVAIMRGTALKSALTVEARIDPDLPVS 699 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--------NEEVILRVRDTGVGM 748 ++ D ++Q+ N+L+NA+ FTP+G ++ + S E + + DTG+G+ Sbjct: 700 VVGDANRLRQVLFNLLNNAVKFTPAGSVVLTARYEGSVPGADGGTAEALRFEISDTGIGI 759 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + KPF Q+ S R G+GLGL + +V G + S G+ Sbjct: 760 APSQRHRLFKPFSQVDGSISRRFGGSGLGLAICHRLVTMMGGAIGVESREGAGSTFWFTL 819 Query: 809 PLYDTSHP 816 L + P Sbjct: 820 ALPRATTP 827 >gi|254524346|ref|ZP_05136401.1| Two component regulator three Y motif family [Stenotrophomonas sp. SKA14] gi|219721937|gb|EED40462.1| Two component regulator three Y motif family [Stenotrophomonas sp. SKA14] Length = 1167 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 128/248 (51%), Gaps = 6/248 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q+ H +++AE+ S KS FLA + HE+RTP+T ++G SE++ PL +P Sbjct: 780 RQQWQLTVHKQELAEQASQAKSRFLATLGHEVRTPMTGVLGMSELLLAT---PL-DPVQR 835 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 YA I ++G+ +L +VND LD+++IE+G++ L P L + + L+Q A ++R+ Sbjct: 836 SYAGSIQQAGSHLLRLVNDALDLARIEAGRLELDLRPFDLAGLLDQVQVLMQPMAKQRRL 895 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + P + D V+QI LN+L NAI FT G + + V V D Sbjct: 896 EFQRGNDPQGPISVSGDEMRVRQILLNLLGNAIKFTERGHVGLAVRLEDNGGGVCFEVYD 955 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G G+ + E+ F Q + R G+GLGL + + + A G+ + S+P KG Sbjct: 956 SGPGINAEQQERLFHRFEQADGPRTASRYGGSGLGLAICQELAVAMGGRIDVESSPGKGA 1015 Query: 803 LIEIIFPL 810 + PL Sbjct: 1016 RFRVRLPL 1023 >gi|209918246|ref|YP_002292330.1| hybrid sensory histidine kinase TorS [Escherichia coli SE11] gi|209911505|dbj|BAG76579.1| two-component sensor kinase [Escherichia coli SE11] gi|324019115|gb|EGB88334.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 117-3] Length = 904 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|219847438|ref|YP_002461871.1| histidine kinase [Chloroflexus aggregans DSM 9485] gi|219541697|gb|ACL23435.1| histidine kinase [Chloroflexus aggregans DSM 9485] Length = 554 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 5/225 (2%) Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHE+RTPL AI+G+++++ Q+ P + Y+E I SG +L +++++LD Sbjct: 311 FLATMSHELRTPLNAILGYAQLLHIQKVVPDSHQPYLER---ILTSGRHLLSLISNVLDF 367 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707 ++IE G ++L + PV + V E +S+ A I T I I D R ++Q+ Sbjct: 368 ARIEQGALDLDYRPVEVAALVEEVVSMTLPLAQRHHNRIETDCPPEIGVIETDGRRLRQV 427 Query: 708 ALNILSNAIHFTPSG--GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 +N+LSNA FT G + + H + + V DTG+G+ + K +PF Q+ + Sbjct: 428 LINLLSNAAKFTEDGLIRLEVTAIQHNGRDGLRFAVHDTGIGIPPDKQHKLFQPFSQVDD 487 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 S R EGTGLGL L+K +V+A G + ST G+ + P+ Sbjct: 488 SVTRRYEGTGLGLALSKQIVEALGGTITVQSTVGVGSTFSVWIPV 532 >gi|16760519|ref|NP_456136.1| two-component sensor kinase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|25512282|pir||AD0700 probable two-component sensor kinase ssrA [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502815|emb|CAD01973.1| putative two-component sensor kinase [Salmonella enterica subsp. enterica serovar Typhi] Length = 920 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 17/256 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L+ AKK AE+ + KS L +SHE+RTP+ ++G E+++ P IE Sbjct: 377 ERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQT-------TPLNIE 429 Query: 626 YANYIDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 D + N +L I+N+LLD S+IESG LH E +L + +A+ +Q A K Sbjct: 430 QQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSK 489 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ +RT ++P D ++QI +N+L NA+ FT +GG I T E++I V Sbjct: 490 KLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG--IRLTVKRHEEQLIFLV 547 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G G+ + + F Q + Q GTG+GL +A ++ G + S P G Sbjct: 548 SDSGKGIEIQQQSQIFTAFYQADTNSQ----GTGIGLTIASSLAKMMGGNLTLKSVPGVG 603 Query: 802 TLIEIIFPLYDTSHPH 817 T + ++ PL + P Sbjct: 604 TCVSLVLPLQEYQPPQ 619 >gi|259417433|ref|ZP_05741352.1| histidine kinase [Silicibacter sp. TrichCH4B] gi|259346339|gb|EEW58153.1| histidine kinase [Silicibacter sp. TrichCH4B] Length = 753 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 84/281 (29%), Positives = 144/281 (51%), Gaps = 22/281 (7%) Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 L++I ++ SL + DI+ + +L A++ AE + KS FLA +SHEIRTP+ Sbjct: 179 LKLIDQRGHDGDIVSLAL-DITATVHYEEELRTARERAEAANRAKSAFLANMSHEIRTPM 237 Query: 601 TAIIGFSEVIKN------QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 ++G +E++ + QR YAN I SG +L I+ND+LD SKIE+ K Sbjct: 238 NGVVGMAELLNDTSLTEEQRL----------YANTIKNSGEALLVIINDVLDYSKIEAEK 287 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILS 713 + LH EP L+ + E + L+Q A +K + + + +P + D ++QI N++ Sbjct: 288 LVLHPEPFDLEACMHEVVMLLQANARDKGLTLLVDYDLFMPTSFIGDPGRIRQILTNLIG 347 Query: 714 NAIHFTPSG--GQIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 NA+ FT G + H + V+L + D+G+G+ +++ F Q+ + Sbjct: 348 NAVKFTNQGHVTARVTGVPHPEDNTVMLHISIEDSGIGIPEEKIQHIFGEFNQVEDETNR 407 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + EGTGLGL + + ++ G+ ++ S KG+ PL Sbjct: 408 QFEGTGLGLAITERLIKMMDGEIWVESEFGKGSCFGFRLPL 448 >gi|206562095|ref|YP_002232858.1| hybrid two-component system kinase-response regulator protein [Burkholderia cenocepacia J2315] gi|198038135|emb|CAR54085.1| hybrid two-component system kinase-response regulator protein [Burkholderia cenocepacia J2315] Length = 1011 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 85/255 (33%), Positives = 134/255 (52%), Gaps = 8/255 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ K + +L A + A+ + KS FLA +SHEIRTPL AI+G E+I + PL Sbjct: 505 DITSQKNIERQLDEAARAADAANDAKSAFLATMSHEIRTPLNAILGNLELIGRE---PLA 561 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + E ++ + +++LD++ND+LD+SKIE+G+M + P L E + + ++ + A Sbjct: 562 ATQR-ERLQTVEGASSVLLDLINDILDLSKIEAGQMTIEAIPFDLAETIRQTGAMFEPLA 620 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNE 735 K + + +P R L D ++QIA N++ NAI FT G ++ + Sbjct: 621 TAKGLQFDVFVDDALPARYLGDPTRIRQIAANLVGNAIKFTNHGEITLEVYLRDDTDPAS 680 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + + V DTG+GMT+ + +PF Q S R GTGLGL L K + G + Sbjct: 681 PIAIGVSDTGIGMTDAQRAALFRPFTQADTSITRRYGGTGLGLALTKQLTQMMHGTVDVK 740 Query: 796 STPAKGTLIEIIFPL 810 S P KG+ + PL Sbjct: 741 SEPGKGSTFVVTLPL 755 >gi|159029098|emb|CAO90087.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 671 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 147/249 (59%), Gaps = 15/249 (6%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 S ++ EK +L AK+ A K + KS+FLA +SHE+RTPL AI+GF+ +I R + + Sbjct: 187 SRYEAEK-ELKEAKEAAVKANKAKSEFLANMSHELRTPLNAILGFTRLIS--RDSSISS- 242 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQLY 678 Y +Y ++RSG +L+++ND+L++SKIE+G+ +F+ +L + ++E +++ Sbjct: 243 EYRQYLEIVNRSGEHLLELINDILEMSKIEAGRTVFNPSNFDLYALLDNIAE---MLRSQ 299 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSN 734 A K + + ++++P+ I D ++Q+ +N+L N + FT SGG ++ + Sbjct: 300 AQAKALSLIFDRSSDLPQYICTDESKLRQVLINLLGNGLKFTESGGVTLRVKLGEKREDY 359 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + ++ + DTG+G+ E+ K +PF Q ++ + +GTGLGLP++K V+ G + Sbjct: 360 QRLLWEIEDTGLGIAPEEIYKLFQPFNQTETGRKSQ-QGTGLGLPISKKFVELMGGAIGV 418 Query: 795 FSTPAKGTL 803 S +G++ Sbjct: 419 SSILGQGSI 427 >gi|157158585|ref|YP_001462226.1| hybrid sensory histidine kinase TorS [Escherichia coli E24377A] gi|332279822|ref|ZP_08392235.1| sensor histidine kinase/response regulator TorS [Shigella sp. D9] gi|157080615|gb|ABV20323.1| sensor histidine kinase/response regulator TorS [Escherichia coli E24377A] gi|332102174|gb|EGJ05520.1| sensor histidine kinase/response regulator TorS [Shigella sp. D9] Length = 914 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 432 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 487 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 488 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 544 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 545 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 602 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 603 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 658 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 659 RLPLRVATAP 668 >gi|91224745|ref|ZP_01260005.1| putative sensor histidine kinase [Vibrio alginolyticus 12G01] gi|269964372|ref|ZP_06178614.1| putative sensor histidine kinase [Vibrio alginolyticus 40B] gi|91190291|gb|EAS76560.1| putative sensor histidine kinase [Vibrio alginolyticus 12G01] gi|269830869|gb|EEZ85086.1| putative sensor histidine kinase [Vibrio alginolyticus 40B] Length = 785 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 78/259 (30%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H + KQ ++ A+ AE+ + KS+FLA +SHE+RTP+ ++G S++I + Sbjct: 244 HRMHNLKQLNLEIEEARNKAERAAKAKSNFLAAMSHELRTPMNGVLGLSQMIAEET---- 299 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P E+ I SG ++ I+ND+LD SK+E K+ LD+ +S S ++ Sbjct: 300 KEPTTKEHIRVILDSGQHLMTILNDILDFSKVEENKLEFEQAKFKLDQVLSPVCSAIKPL 359 Query: 679 ANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 +EK I LI + + D ++QI N+ NA+ FT G ++ + SN+ + Sbjct: 360 VDEKNIELILENEVSEYTEFTGDCARLRQILFNLAGNAVKFTNEGHVLVRTELDESNQLL 419 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 ++RV DTG+G+ + E F Q +S R GTGLGL + K + D G + S Sbjct: 420 VMRVSDTGIGIAPDKHEHIFNSFEQADSSTTRRFGGTGLGLAIVKKLTDLMGGHITLKSI 479 Query: 798 PAKGT--LIEIIFPLYDTS 814 G+ ++E+ P +++ Sbjct: 480 EGVGSQFIVELPIPWVESA 498 >gi|120556580|ref|YP_960931.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] gi|120326429|gb|ABM20744.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] Length = 966 Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 110/379 (29%), Positives = 196/379 (51%), Gaps = 20/379 (5%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R R+ + +L +I++A DGI I+ GI+LS N + ++FGY ++++ K + Sbjct: 259 RALMRRSQETASELRTIVDAAVDGIIKISDRGIVLSFNESAERIFGYRADEVVGKNINML 318 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL---------SLRIIIKKLPFS 551 + + YL L +T ++ +GS +E L L I +L Sbjct: 319 MPNPHRDAHDGYLKNYL-----RTGKRKIIGSGREVWALHKDGHQIPVRLGIGESRLGGI 373 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 S + + DISE + + L AK+ AE+ ++ KS FLA +SHEIRTP+ AIIGF++++ Sbjct: 374 STFVGFITDISERHRMETDLRRAKEEAEQAAAAKSAFLANMSHEIRTPMNAIIGFTDLVL 433 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + PL + + + S +L+++ND+LD +K++ G L +L + Sbjct: 434 DT---PL-DETQARHLGVVKTSARSLLNLLNDILDTAKLDGGHTELELHDFNLRRLCDQV 489 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 I+ L A K + + + D ++Q+ LN+LSNA+ FT +GG + + Sbjct: 490 IATQSLNAARKGLYLTLDYQAG-EYYQGDPLRIQQVVLNLLSNAVKFTQTGG-VTLKVQE 547 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 S +V++RV DTG+G++ +++ +PF Q +S R GTGLG +A+ +V+ G Sbjct: 548 PSVHKVVIRVEDTGIGISADRIDRIFEPFTQADSSMTRRFGGTGLGTTIARQLVELMGGT 607 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + S+P +G++ ++ PL Sbjct: 608 ISVTSSPGEGSVFQVELPL 626 >gi|323175873|gb|EFZ61467.1| TMAO reductase sytem sensor TorS [Escherichia coli 1180] Length = 904 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|323174897|gb|EFZ60512.1| TMAO reductase sytem sensor TorS [Escherichia coli LT-68] Length = 904 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|239627656|ref|ZP_04670687.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517802|gb|EEQ57668.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 891 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 97/298 (32%), Positives = 150/298 (50%), Gaps = 16/298 (5%) Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDI-----SEWKQEKNKLSHAKKIA 578 +E +G E +SL+II + PF+ ++ + + +E +++ L A A Sbjct: 315 MEFRQIGKDDEYHWISLQIIYVENPFNGDMLAIILVKVLDAQRAEQARQEQLLRDALASA 374 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA-NYIDRSGNLV 637 + + KSDFL+R+SH+IRTP+ AIIG S + + + LG+ R ++ ID S + Sbjct: 375 KAANRAKSDFLSRMSHDIRTPMNAIIGMSTIGQLK----LGDDRSVQDCFRKIDASSRYL 430 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696 L ++ND+LD+SKIE+GKM L E E + E +V A EK+I + + Sbjct: 431 LSLINDILDMSKIETGKMELSQEYFDFAELIGEIDQIVYPQAQEKKIRYEIYHEEPLEQY 490 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGG--QIIISTTHTSNEEVILR--VRDTGVGMTNYE 752 + D VKQI LN+LSNA+ FT + G QI I +N +R VRD+G+GM+ Sbjct: 491 YVGDSLRVKQILLNLLSNALKFTSADGLIQINIQEQKRTNGFSYIRFCVRDSGIGMSKEF 550 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + +PF Q G+GLGL + +V G + S KG + PL Sbjct: 551 RSRIFQPFEQESPEAARNNVGSGLGLSIVYNLVQLMGGTIEVESEKNKGAAFTVTIPL 608 >gi|161986555|ref|YP_309969.2| hybrid sensory histidine kinase TorS [Shigella sonnei Ss046] Length = 914 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 432 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 487 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 488 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 544 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 545 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 602 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 603 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 658 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 659 RLPLRVATAP 668 >gi|162451352|ref|YP_001613719.1| two-component histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161161934|emb|CAN93239.1| two-component histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 636 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 74/258 (28%), Positives = 135/258 (52%), Gaps = 8/258 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESS----HKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 TM + E+N L ++K A E+ + L V+H++R PL+AI+ + ++K Sbjct: 380 TMAEQCAQAVERNSLFESEKRARAEAQEAVRQREQMLGIVAHDLRNPLSAIMLRAALLKR 439 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + + ++ + I+R+ ++ DLLD++ I++ ++++ P + + V++A Sbjct: 440 ELASRVDEEKWRDGVRTIERAARHSNRLIADLLDVASIDAHRLSILPAPHEVSDLVADAT 499 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 V+L A + + + ++PR+LAD V Q+ N+L NA FTP GG I + Sbjct: 500 ETVRLGATGRSLSVHVEVPTDLPRVLADRDRVVQVLSNLLGNAHKFTPDGGTIGVR-AEA 558 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + EV + VRD+GVG+ L + P+ PN++Q GTGLGL +A+ +V A+ G+ Sbjct: 559 LDGEVGIHVRDSGVGIAAEHLSRIFDPYWTRPNNRQ---RGTGLGLAIARGIVQAHGGRI 615 Query: 793 YIFSTPAKGTLIEIIFPL 810 ++ S G+ PL Sbjct: 616 WVESRVGDGSTFSFTLPL 633 >gi|218530077|ref|YP_002420893.1| multi-sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218522380|gb|ACK82965.1| multi-sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 1125 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 133/248 (53%), Gaps = 12/248 (4%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE+ S+ KS+FLA +SHEIRTPL I+G+++++ ++R + R +E I SG + Sbjct: 583 AERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDRRDHDPEDQRRLE---LIRVSGESL 639 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696 L +VND+LD+SKIE+G++ L P +L + + + +++++ A + + + ++P Sbjct: 640 LTVVNDVLDVSKIEAGQLELDPLPFALGKLIEDTVAIMRGTALKSALTVEARIDPDLPAS 699 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--------NEEVILRVRDTGVGM 748 ++ D ++Q+ N+L+NA+ FTP+G ++ + S E + + DTG+G+ Sbjct: 700 VVGDANRLRQVLFNLLNNAVKFTPAGSVVLTARYEGSVPGADGGTAEALRFEISDTGIGI 759 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + KPF Q+ S R G+GLGL + +V G + S G+ Sbjct: 760 APSQRHRLFKPFSQVDGSISRRFGGSGLGLAICHRLVTMMGGAIGVESREGAGSTFWFTL 819 Query: 809 PLYDTSHP 816 L + P Sbjct: 820 ALPRATTP 827 >gi|114563673|ref|YP_751186.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] gi|114334966|gb|ABI72348.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] Length = 1132 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 80/257 (31%), Positives = 135/257 (52%), Gaps = 6/257 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI++ K+ + L AK AE+ +S +S FLA +SHEIRTP+ AIIGFS+++ + P Sbjct: 534 DITDRKEMEQSLLIAKDKAEQAASARSAFLANMSHEIRTPMNAIIGFSDILLDDSL-PAE 592 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +++ I++S +L ++ND+LD +K++ GK +L S+ E + +S + L A Sbjct: 593 QQKHLR---TINQSAKSLLHLLNDVLDSAKLDKGKFDLELRDFSVIEEIDSVVSTLWLQA 649 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + K + + + + ++ ++Q+ N++ NAI FT GG + I + + + Sbjct: 650 SSKGLFLNVNVSADVAISYHGAPDRIRQVLTNLIGNAIKFTAEGG-VSIDVSVKPSGCIE 708 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + DTG+GMT +L F Q S R GTGLG ++K +V+ GK ST Sbjct: 709 FAINDTGIGMTPEQLALVFDAFAQADASMNRRFGGTGLGTTISKQLVELMGGKITAKSTF 768 Query: 799 AKGTLIEIIFPLYDTSH 815 +G+ PL H Sbjct: 769 GQGSCFGFTLPLTAPKH 785 >gi|320659602|gb|EFX27165.1| hybrid sensory histidine kinase TorS [Escherichia coli O55:H7 str. USDA 5905] Length = 904 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 136/250 (54%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT GQI++ + T E+ ++ V D+G Sbjct: 535 TAIADDVPTALMGDPRRIRQVITNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFIQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|304310584|ref|YP_003810182.1| Sensor kinase GacS [gamma proteobacterium HdN1] gi|301796317|emb|CBL44525.1| Sensor kinase GacS [gamma proteobacterium HdN1] Length = 994 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 82/243 (33%), Positives = 133/243 (54%), Gaps = 8/243 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL A+IGF+ ++ +Y +Y Sbjct: 297 ELDLARKEAVEASRIKSEFLANISHEIRTPLNAVIGFTTLLLKSDIKTF---QY-DYLET 352 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I +S +L I+ND+LD SKIE+GK++L P + V + ++++ A EK + + Sbjct: 353 ILKSSEGLLAIINDVLDFSKIEAGKLSLESTPFNFQNLVEDVLTMLAPMAYEKHLEQISL 412 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILRVR--DTG 745 + +++P +I+ D +KQI N+++NAI FT G ++ + + N +++V DTG Sbjct: 413 YYSDVPQQIIGDPLRLKQILTNLVNNAIKFTSQGEVVVRVMLEDSRNHLCVIKVSVTDTG 472 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+T + F Q NS R GTGLGL ++K +V+ G+ I S G Sbjct: 473 IGLTKEQQSALFHAFQQADNSAARRHSGTGLGLVISKHLVEQMRGQIGIESEIGAGATFW 532 Query: 806 IIF 808 F Sbjct: 533 FTF 535 >gi|298242637|ref|ZP_06966444.1| GAF sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297555691|gb|EFH89555.1| GAF sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 557 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 134/244 (54%), Gaps = 3/244 (1%) Query: 575 KKIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGNPRYIEYANYIDR 632 K A ++++H KS FLA V+HE+RTPL +II + ++ G L + + E+ ++ R Sbjct: 303 KNAALEQANHLKSQFLANVTHELRTPLHSIISYGALLLEGYVEGELSSEQE-EHIQFMVR 361 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 + +V+D+LD+SKIE+ ++ + E + L ++SE ++ ++ A K + + Sbjct: 362 RAEDLSHLVDDMLDLSKIEADRIEMKPEALELSVSLSEVVNQLKPMALNKDLYLNLECDP 421 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 +P++LAD ++QI LN++SNA+ FT GG I +V++ V DTG+G++ Sbjct: 422 QVPKVLADSHRLRQIVLNLVSNALKFTEKGGVTIHCQHMPERAQVLISVHDTGIGISPAA 481 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 L + F Q S R GTGLGL +A+ +++ G+ + S P +G+ P+ Sbjct: 482 LGYIFEAFRQADGSTTRRFGGTGLGLTIARKLIELQGGEIAVESIPGRGSTFAFTLPVAA 541 Query: 813 TSHP 816 + P Sbjct: 542 SISP 545 >gi|260778490|ref|ZP_05887382.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450] gi|260604654|gb|EEX30949.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450] Length = 812 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 106/374 (28%), Positives = 175/374 (46%), Gaps = 20/374 (5%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTP 506 E E +L +++ D + + + + N A +L GY + +++ +KP V +T Sbjct: 297 EAESARLARVVKHMRDAVVFTDLDSKVTWVNGAFERLTGYSLSEMIGKKPGDVLQGVDTD 356 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC------YSLTMHD 560 + E++ D R+ L KE + S I I P S + D Sbjct: 357 KRTTRKIRELI--DRREPGFFELLNYNKEGE--SYWIEIALTPLYSTHGQIEGFMAVERD 412 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I++ + + L AE + KS FLA +SHE+RTP+ I+G +++KN N Sbjct: 413 ITQRVELEESLKIKAVEAEAANIAKSQFLAAMSHELRTPMNGILGVGDLLKNTTL----N 468 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 EY + SG +L+++ND+LD SKIE+GK+ L L + V+ L + Sbjct: 469 EEQQEYVDTFLGSGKHMLNVLNDILDFSKIEAGKLELEKVEFLLKDVVARLTRLYEPLCA 528 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIS---TTHTSNEE 736 +K + + ++ + R L AD + QI N+LSNA+ FT GG I +S + E Sbjct: 529 DKHLEFKCEYSQSCDRALVADETRILQILQNLLSNALKFTSEGG-ITLSLDVVEQSHRIE 587 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + V DTG+G++ + PF Q + R GTGLGL + + +V A G + S Sbjct: 588 LHIDVSDTGIGISPEKQSAIFDPFSQAESDTTRRFGGTGLGLSITRDLVKAMNGTVDLSS 647 Query: 797 TPAKGTLIEIIFPL 810 KG+ I+ P+ Sbjct: 648 EVGKGSQFTIVVPV 661 >gi|300777605|ref|ZP_07087463.1| virulence sensor histidine kinase EvgS [Chryseobacterium gleum ATCC 35910] gi|300503115|gb|EFK34255.1| virulence sensor histidine kinase EvgS [Chryseobacterium gleum ATCC 35910] Length = 735 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 84/258 (32%), Positives = 141/258 (54%), Gaps = 11/258 (4%) Query: 559 HDISEWKQEK---NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 H + ++K+++ ++L A+K A + K +FLA +SHEIRTPL+ I+GF+ +++ + Sbjct: 210 HILRQFKRQRLLISELDIAEKKALVAAQTKENFLANMSHEIRTPLSGILGFTNLLQKR-- 267 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 PL + E+ + I RSG ++ I+ND+LD+SKIE+G M + S++ V+ + Sbjct: 268 -PL-DETSAEFVSSIQRSGENLMAIINDILDLSKIEAGMMRITPGIFSINGLVNSVETFF 325 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI--IISTTHT 732 A EK + I ++ +IP ++ D + QI +N++ NAI FT G I S T Sbjct: 326 TERAKEKGLTISSTIEPSIPDTLVGDATRLTQILVNLIGNAIKFTHQGNITVEIYSKQQT 385 Query: 733 SNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 E V+ ++ DTG+G+ +L + + F Q +S GTGLGL + K+++ G Sbjct: 386 EKEAVLGFKISDTGIGIDKEKLTEIFERFNQGEDSTTRNYGGTGLGLSIVKSLILLQNGN 445 Query: 792 FYIFSTPAKGTLIEIIFP 809 + S P KGT P Sbjct: 446 IEVSSEPGKGTTFHFYIP 463 >gi|298492565|ref|YP_003722742.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] gi|298234483|gb|ADI65619.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] Length = 1322 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 142/247 (57%), Gaps = 15/247 (6%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q+ +L A+ AE + KS+FLA +SHE+RTPL AI+GF++V+ R L N + Sbjct: 828 QQQSLELEKARDAAESANRAKSEFLANMSHELRTPLNAIMGFTQVMS--RDISL-NQEHQ 884 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + + I+RSG +L+++ND+L++SKIE+G++ L+ L ++ L++L A+ K + Sbjct: 885 SHLDIINRSGQHLLELINDVLEMSKIEAGRIKLNTSSFDLYYLLTNLEDLLRLKADFKEL 944 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------- 736 + A ++P+ I +D ++Q+ LN+L NAI FT G++ + +N++ Sbjct: 945 TLIFDCAQDVPQYITSDEVKLRQVLLNLLGNAIKFTQK-GKVTLRVRKINNKDYGDPIST 1003 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++ V DTG G+ ++++ PF Q N+ EGTGLGL +++ V G+ + Sbjct: 1004 SLLFEVEDTGTGIAPEDIKQLFTPFVQARNTDA--HEGTGLGLTISQKFVKLMQGEITVE 1061 Query: 796 STPAKGT 802 S +G+ Sbjct: 1062 SVVGQGS 1068 >gi|254411811|ref|ZP_05025587.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181533|gb|EDX76521.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 562 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 95/364 (26%), Positives = 187/364 (51%), Gaps = 21/364 (5%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-QNTPSVMNHYLTE 515 I+ + +D + + G I + NRA LFGY +++++ +P T ++ Q + +NH Sbjct: 150 IISSMADALLVTTASGDIKTANRAAQTLFGYKIDELVGQPITKIIKNQEFLNNLNH---- 205 Query: 516 ILSLDLRQTLEKITLGS-TKEEKLL----SLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 LS D T + I L TK+ + + S +I L S + D+++ K + + Sbjct: 206 -LSPD-SSTFQDIELNCLTKQGETVAVAFSCSALITDLEGSLNFVYVGRDLTQRKLLEAE 263 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + A + ++ + KS F++ SHE R PLTA+ +E+++ Q + +++ N I Sbjct: 264 MLQALEREKELTELKSRFISMTSHEFRVPLTAVYSSTELLE-QYSHNWAEEKKLKHFNRI 322 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 S N + +++D+L ++K ESGK+ + +P++L++ + + ++L ++ S+ Sbjct: 323 KDSVNRMTTLLDDVLIVNKAESGKLEFNPQPLNLNQLCQDLVEDIELGIGKQH---EISW 379 Query: 691 ANN--IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 N+ + D + ++ I N+L+NA+ ++P G + + H +EVI ++D G+G+ Sbjct: 380 INSGRASKACMDEKLLRHILTNLLTNAVKYSPLGSTVQFNC-HCREQEVIFEIKDQGIGI 438 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + ++ + F + N I +GTGLGL + K VD + GK + S GT ++ Sbjct: 439 PPEDQKRLFESFHRAKNVGNI--QGTGLGLSIVKKSVDLHGGKLAVHSEVGVGTTFKVTL 496 Query: 809 PLYD 812 PL D Sbjct: 497 PLGD 500 >gi|294054668|ref|YP_003548326.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293614001|gb|ADE54156.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 1009 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 77/252 (30%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ + L A+ A+ S K +FLA +SHEIRTP+ AIIG++++++ L Sbjct: 604 QENQEALQIARDRADAASVAKGEFLAMMSHEIRTPMNAIIGYTDLLRQTNLDELQA---- 659 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E A+ I RSG +L+++N++LD SKIES + L V +++ V EA+ + + EK + Sbjct: 660 EQASIIKRSGKALLELINNILDYSKIESRTLELETSNVDVEQVVCEALEYILPQSKEKAL 719 Query: 685 LIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE----EVI 738 I + + D ++QI +N +NA+ FT +G +I + H+ + + Sbjct: 720 KIDFEISETVNAAYWGDPHRLRQILMNFANNAVKFTDTGSIRIDVDLKHSESSPDTHALY 779 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 RV DTG G+ + ++ KPF Q+ +S + GTGLGL ++K +++ G+ ++ S Sbjct: 780 FRVTDTGCGIPEDKFDRLFKPFSQVDSSTTRQFGGTGLGLVISKRLIERMDGRVWVSSQV 839 Query: 799 AKGTLIEIIFPL 810 +GT + L Sbjct: 840 GEGTTFHFVVNL 851 >gi|51894441|ref|YP_077132.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] gi|51858130|dbj|BAD42288.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] Length = 596 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 96/371 (25%), Positives = 173/371 (46%), Gaps = 38/371 (10%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVF----LEQNTPS 507 Q +IL +DG+ +NR I+ N A ++F ++ + R+P + LE+ Sbjct: 252 QAEAILTHMADGLMALNRARRIIRLNPAAQRMFQIQELQALGRRPGELAEGSGLEEALEE 311 Query: 508 VM--NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 N LT + L R L+ T E + S + HDI+E Sbjct: 312 AWDRNSALTRQIRLKDR-VLQAYITPLTGEGR------------HSGGTVVVFHDITEL- 357 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 E+ S + +F+A VSHE++TPLT + + E + + G +P + Sbjct: 358 -------------ERLESMRREFVANVSHELKTPLTTVKSYVETLLD---GAADDPEVRD 401 Query: 626 -YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + +D + +V DLL +++++ G + + P + E V+E + +++ A+ KR+ Sbjct: 402 RFLRVVDGETERMARLVRDLLRLTQMDEGTLRWNVRPQDVGELVAETVGRLRVQADRKRL 461 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + P L D ++Q+ +N+L+NAI FTP+GGQI +S + V + + DT Sbjct: 462 TVLCEVDPETPPALCDYDKIQQVVINLLANAIEFTPNGGQIRVSVAPEGADAVRVTIADT 521 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ +L + + F ++ ++ GTGLGL +AK +V+ + G I S +GT + Sbjct: 522 GIGIPAQDLPRIFERFYRVDKARSRSMGGTGLGLSIAKQIVELSGGAIAIASEVDRGTTV 581 Query: 805 EIIFPLYDTSH 815 P T+ Sbjct: 582 TFTLPAARTAE 592 >gi|161614192|ref|YP_001588157.1| hypothetical protein SPAB_01934 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161363556|gb|ABX67324.1| hypothetical protein SPAB_01934 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 920 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 17/256 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L+ AKK AE+ + KS L +SHE+RTP+ ++G E+++ P IE Sbjct: 377 ERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQT-------TPLNIE 429 Query: 626 YANYIDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 D + N +L I+N+LLD S+IESG LH E +L + +A+ +Q A K Sbjct: 430 QQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSK 489 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ +RT ++P D ++QI +N+L NA+ FT +GG I T E++I V Sbjct: 490 KLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG--IRLTVKRHEEQLIFLV 547 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G G+ + + F Q + Q GTG+GL +A ++ G + S P G Sbjct: 548 SDSGKGIEIQQQSQIFTAFYQADTNSQ----GTGIGLTIASSLAKMMGGNLTLKSVPGVG 603 Query: 802 TLIEIIFPLYDTSHPH 817 T + ++ PL + P Sbjct: 604 TCVSLVLPLQEYQPPQ 619 >gi|300920962|ref|ZP_07137352.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 115-1] gi|300412082|gb|EFJ95392.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 115-1] Length = 904 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|240138362|ref|YP_002962834.1| hypothetical protein MexAM1_META1p1713 [Methylobacterium extorquens AM1] gi|240008331|gb|ACS39557.1| hypothetical protein MexAM1_META1p1713 [Methylobacterium extorquens AM1] Length = 1125 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 133/248 (53%), Gaps = 12/248 (4%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE+ S+ KS+FLA +SHEIRTPL I+G+++++ ++R + R +E I SG + Sbjct: 583 AERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDRRDHDPEDQRRLE---LIRVSGESL 639 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696 L +VND+LD+SKIE+G++ L P +L + + + +++++ A + + + ++P Sbjct: 640 LTVVNDVLDVSKIEAGQLELDPLPFALGKLIEDTVAIMRGTALKSALTVEARIDPDLPAS 699 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--------NEEVILRVRDTGVGM 748 ++ D ++Q+ N+L+NA+ FTP+G ++ + S E + + DTG+G+ Sbjct: 700 VVGDANRLRQVLFNLLNNAVKFTPAGSVVLTARYEGSVPGADGGTAEALRFEISDTGIGI 759 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + KPF Q+ S R G+GLGL + +V G + S G+ Sbjct: 760 APSQRHRLFKPFSQVDGSISRRFGGSGLGLAICHRLVTMMGGAIGVESREGAGSTFWFTL 819 Query: 809 PLYDTSHP 816 L + P Sbjct: 820 ALPRATTP 827 >gi|172036100|ref|YP_001802601.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171697554|gb|ACB50535.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 850 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 140/251 (55%), Gaps = 6/251 (2%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E +Q + A++ AE+ + K +FLA +SHE+R+PL I+G+S +++ ++F P+ Sbjct: 461 IAERQQLLEREQAAREDAEQANRIKDEFLAILSHELRSPLNPILGWSTLLQTKQFDPITT 520 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + + + I+R+ L +++DLLDI++I GK+ L V+L V A+ +V+ A Sbjct: 521 KKGL---STIERNAKLQTQLIDDLLDIARILRGKLKLEETTVNLVTVVEGAMEVVRTTAE 577 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K I ++ + ++ D ++Q+ N+LSNAI FTP GGQ+ + + E+ L Sbjct: 578 AKSIALQFEVI-TVCQVRGDEGRLEQVVWNLLSNAIKFTPEGGQVGVR-LEVNGEQACLT 635 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PA 799 V+DTG G+++ L + F Q S + G GLGL + K +VDA+ G S+ Sbjct: 636 VKDTGKGISSDFLPYLFQSFRQEDVSVTRQYGGLGLGLAIVKYIVDAHNGSITADSSGEG 695 Query: 800 KGTLIEIIFPL 810 +G + FP+ Sbjct: 696 QGATFTVQFPV 706 >gi|170679899|ref|YP_001744412.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli SMS-3-5] gi|170517617|gb|ACB15795.1| sensor histidine kinase/response regulator RcsC [Escherichia coli SMS-3-5] Length = 949 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 7/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 442 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 500 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 501 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 557 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + Sbjct: 558 PLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLQVRADGD 615 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 616 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 675 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ + PLY +P Sbjct: 676 SEPGMGSQFTVRIPLYGAQYPQ 697 >gi|193070789|ref|ZP_03051723.1| TMAO reductase system sensor TorS [Escherichia coli E110019] gi|192955900|gb|EDV86369.1| TMAO reductase system sensor TorS [Escherichia coli E110019] Length = 904 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|302036176|ref|YP_003796498.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii] gi|300604240|emb|CBK40572.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii] Length = 1210 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 92/271 (33%), Positives = 147/271 (54%), Gaps = 11/271 (4%) Query: 538 LLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 +LS +I+ L + + +H D ++ K+ + +L AK+ AE S KS+FLA +SHEI Sbjct: 609 ILSRGSLIRDLYGVTARMVGIHIDTTDRKRTEEELRSAKEAAEAASKAKSEFLANMSHEI 668 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTP+ ++G +E++ N + A+ + RSG +L I+ND+LD SKIE+GK++ Sbjct: 669 RTPMNGVLGTTELLLNSAL----TDKQRHLASTVHRSGRTLLAIINDILDFSKIEAGKLD 724 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNA 715 L L + E++ L A K++ + A+ +PR L D +QI +N+LSNA Sbjct: 725 LECVDFDLLPVLEESLELFGEAARRKQLRLSQHIADAVPRYLKGDPVRFRQILMNLLSNA 784 Query: 716 IHFTPSGGQIIISTTHT--SNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 + FT +GG + +S + + + +LR V DTG+G+ + F Q S R Sbjct: 785 MKFTETGG-VSLSAEYVEGTTTQALLRFAVTDTGIGIPPAAKSRIFDAFSQADGSTTRRY 843 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GTGLGL +AK +V G + STP G+ Sbjct: 844 GGTGLGLSIAKQLVGLMGGTITVESTPGSGS 874 >gi|300925320|ref|ZP_07141210.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 182-1] gi|300418542|gb|EFK01853.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 182-1] Length = 904 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|171059183|ref|YP_001791532.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170776628|gb|ACB34767.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 957 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 88/254 (34%), Positives = 136/254 (53%), Gaps = 16/254 (6%) Query: 560 DISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 DISE K+++ +L+ A+ AE + KS FLA +SHEIRTP+ AIIG +++++ Sbjct: 256 DISEIKRDEIRLRQLNTELAQARDHAEAANRAKSTFLANMSHEIRTPMNAIIGLTQLLRR 315 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 P G + + A+ D +L I+ND+LD+SKIESGK+ L + LDE +S + Sbjct: 316 THRDPAGAEQLAKVADAADH----LLQIINDVLDLSKIESGKVELESIDIDLDELLSRTL 371 Query: 673 SLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 SLV A+EK + + +++PR L D + Q LN+L+NAI FT G I+ Sbjct: 372 SLVSSRAHEKGLELVLD-TDHLPRTLRGDPTRLSQALLNLLTNAIKFTDHGSVILRGQKL 430 Query: 732 TSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + V V+DTG+G+ ++E F Q +S R GTGLGL + + + Sbjct: 431 QDGADGVHVRFSVQDTGIGVEADQVEALFLAFEQGDSSTTRRHGGTGLGLAITRHLAQLM 490 Query: 789 MGKFYIFSTPAKGT 802 G+ S +G+ Sbjct: 491 GGESGADSVAGQGS 504 >gi|168822261|ref|ZP_02834261.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205341298|gb|EDZ28062.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 920 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 17/256 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L+ AKK AE+ + KS L +SHE+RTP+ ++G E+++ P IE Sbjct: 377 ERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQT-------TPLNIE 429 Query: 626 YANYIDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 D + N +L I+N+LLD S+IESG LH E +L + +A+ +Q A K Sbjct: 430 QEGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSK 489 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ +RT ++P D ++QI +N+L NA+ FT +GG I T E++I V Sbjct: 490 KLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG--IRLTVKRHEEQLIFLV 547 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G G+ + + F Q + Q GTG+GL +A ++ G + S P G Sbjct: 548 SDSGKGIEIQQQSQIFTAFYQADTNSQ----GTGIGLTIASSLAKMMGGNLTLKSVPGVG 603 Query: 802 TLIEIIFPLYDTSHPH 817 T + ++ PL + P Sbjct: 604 TCVSLVLPLQEYQPPQ 619 >gi|324117144|gb|EGC11052.1| TMAO reductase sytem sensor TorS [Escherichia coli E1167] Length = 914 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 432 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 487 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 488 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 544 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 545 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 602 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 603 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 658 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 659 RLPLRVATAP 668 >gi|78355591|ref|YP_387040.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217996|gb|ABB37345.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 981 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 123/246 (50%), Gaps = 11/246 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ++E QE L HA+ AE+ S K DF+A +SHE+RTP+ AIIG E+ Sbjct: 248 VAERTQE---LEHARHTAEQASKAKGDFVASMSHELRTPMNAIIGMIEIALKTEL----T 300 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + EY I S +L +VND+LDISKIE+ KM L P S E + E L + Sbjct: 301 VKQREYLTIIRSSARSLLGVVNDILDISKIEAQKMELEHIPFSTQEMLEEVTDLFRERVG 360 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI- 738 K + + ++P +L D +KQ+ +N+++NA FT G I + +++V+ Sbjct: 361 MKGVELVLDIEADVPAVLVGDPLRLKQVLVNLVTNAFKFTKQGEVRIRVAVGSRSQDVVQ 420 Query: 739 --LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 VRDTG+G+ + F Q S G+GLGL +A+ +V G + S Sbjct: 421 LEFSVRDTGLGIGEEARNRLFDTFSQAEGSTARLFGGSGLGLSIARELVRLMGGTITVAS 480 Query: 797 TPAKGT 802 P KG+ Sbjct: 481 EPGKGS 486 >gi|29141721|ref|NP_805063.1| two-component sensor kinase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213051566|ref|ZP_03344444.1| putative two-component sensor kinase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213428552|ref|ZP_03361302.1| putative two-component sensor kinase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213647231|ref|ZP_03377284.1| putative two-component sensor kinase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213854966|ref|ZP_03383206.1| putative two-component sensor kinase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|29137349|gb|AAO68912.1| putative two-component sensor kinase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 920 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 17/256 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L+ AKK AE+ + KS L +SHE+RTP+ ++G E+++ P IE Sbjct: 377 ERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQT-------TPLNIE 429 Query: 626 YANYIDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 D + N +L I+N+LLD S+IESG LH E +L + +A+ +Q A K Sbjct: 430 QQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSK 489 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ +RT ++P D ++QI +N+L NA+ FT +GG I T E++I V Sbjct: 490 KLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG--IRLTVKRHEEQLIFLV 547 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G G+ + + F Q + Q GTG+GL +A ++ G + S P G Sbjct: 548 SDSGKGIEIQQQSQIFTAFYQADTNSQ----GTGIGLTIASSLAKMMGGNLTLKSVPGVG 603 Query: 802 TLIEIIFPLYDTSHPH 817 T + ++ PL + P Sbjct: 604 TCVSLVLPLQEYQPPQ 619 >gi|256810598|ref|YP_003127967.1| integral membrane sensor signal transduction histidine kinase [Methanocaldococcus fervens AG86] gi|256793798|gb|ACV24467.1| integral membrane sensor signal transduction histidine kinase [Methanocaldococcus fervens AG86] Length = 632 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 109/364 (29%), Positives = 186/364 (51%), Gaps = 48/364 (13%) Query: 476 STNRAVSKLF-GYPVEDILRKPFTVFLEQN--TPSVMNHYLTEILSLDLRQTLEKITLGS 532 S N + LF G P KPF + L+QN T +++ +L+ IL+L + L + +G Sbjct: 287 SDNEVIGMLFVGTP-----EKPF-IELQQNIKTHTILIGFLSIILALSVSLVLSEAIIGP 340 Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMH-----DISEWKQEKNKLS------------HAK 575 K+ K + +I S Y++ + +I E + NK++ H K Sbjct: 341 IKKLKYAAEKI------SSGNYNIHVDVSSDDEIGELAKAFNKMAEDIRKSHEELKRHTK 394 Query: 576 KIAE-----KESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN--PRYIEYA 627 ++ E KE KS+ ++ VSHE+RTPLT+I G+ E++ + G L + R +E A Sbjct: 395 ELKESYEKLKEIDKLKSEIISIVSHELRTPLTSIKGYVELVLDGLMGELNSNQRRCLEIA 454 Query: 628 NY-IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 N IDR L+ +D+LD+SKIESG + + V + + V + ++ + EK I I Sbjct: 455 NNNIDRLKRLI----DDMLDLSKIESGTIKFDIKDVKIKDMVVDVLNSLGPQIKEKNIEI 510 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 + N+ D + Q+ +N++ NAI F+P G I I +N I+ ++D G Sbjct: 511 KCEIEENLTA-KVDKDRITQVLINLIENAIKFSPVKGVIEIHAFRDNNYAHII-IKDYGP 568 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L+K F Q+ N +I+ +G GLGL + K++++A+ GK ++ S KGT + Sbjct: 569 GIPKKDLDKIFDKFYQV-NFPKIKKDGAGLGLAICKSIIEAHGGKIWVESELGKGTSFHV 627 Query: 807 IFPL 810 + P+ Sbjct: 628 LLPI 631 >gi|170748811|ref|YP_001755071.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170655333|gb|ACB24388.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 676 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 82/260 (31%), Positives = 127/260 (48%), Gaps = 9/260 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++ + A + AE S KS FLA VSHE+RTPL I+G ++++ Sbjct: 148 RDVTARVEAIRSRDAALERAEAASVAKSRFLATVSHEMRTPLNGILGMADLVLGTEL--- 204 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 NP Y + SG +L +++ +LD S+IE+G+++L EP L + L+ Sbjct: 205 -NPEQRTYVEAVRTSGQALLGLIDGVLDFSRIEAGRLDLAAEPFDLPALSEGVVELLAPR 263 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS---TTHTSN 734 A +K I I A + P +L D V+QI +N+ NAI FT GG + +S + Sbjct: 264 AQDKGIEIALDVAEDFPAAVLGDADRVRQILINLAGNAIKFTERGG-VGVSLGFARAGTG 322 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 EV+L V DTG G+ L + F Q S EGTGLGL + + +V G+ Sbjct: 323 GEVVLAVADTGPGIPEERLPILFEEFEQGDGSASRSHEGTGLGLAITRRLVTRMGGRIEA 382 Query: 795 FSTPAKGTLIEIIFPLYDTS 814 S +G+ ++ PL + + Sbjct: 383 DSRLGRGSTFRVLLPLAEVA 402 >gi|168239276|ref|ZP_02664334.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194738250|ref|YP_002114407.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204927498|ref|ZP_03218699.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194713752|gb|ACF92973.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288021|gb|EDY27408.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204322840|gb|EDZ08036.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 920 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 17/256 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L+ AKK AE+ + KS L +SHE+RTP+ ++G E+++ P IE Sbjct: 377 ERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQT-------TPLNIE 429 Query: 626 YANYIDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 D + N +L I+N+LLD S+IESG LH E +L + +A+ +Q A K Sbjct: 430 QQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSK 489 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ +RT ++P D ++QI +N+L NA+ FT +GG I T E++I V Sbjct: 490 KLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG--IRLTVKRHEEQLIFLV 547 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G G+ + + F Q + Q GTG+GL +A ++ G + S P G Sbjct: 548 SDSGKGIEIQQQSQIFTAFYQADTNSQ----GTGIGLTIASSLAKMMGGNLTLKSVPGVG 603 Query: 802 TLIEIIFPLYDTSHPH 817 T + ++ PL + P Sbjct: 604 TCVSLVLPLQEYQPPQ 619 >gi|138896292|ref|YP_001126745.1| sensory box histidine kinase PhoR [Geobacillus thermodenitrificans NG80-2] gi|134267805|gb|ABO68000.1| Sensory box histidine kinase PhoR [Geobacillus thermodenitrificans NG80-2] Length = 583 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 105/366 (28%), Positives = 180/366 (49%), Gaps = 22/366 (6%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 R EI+ +L +++E G+ I+ G I NRA F D L +P+ Sbjct: 235 RAREIQTDRLHTLIENVGSGLLFIDHRGHIHLINRAFQTYFHLDSSDCLYRPYA------ 288 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 V+ H D+ + ++ I + T + + L I I++ F + + +EW Sbjct: 289 --DVLPHR-------DIIKLIDDIFITETAMRRHMRLTIGIERKHFDVYGAPIIGTNAEW 339 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K ++ E K DF+A VSHE++TP+T+I GF+E + + G + + + Sbjct: 340 KGIVVVFHDITELKRLEQIRK-DFVANVSHELKTPVTSIKGFAETLLD---GAMKDEEAL 395 Query: 625 E-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 E + I + + +V +LLD+SKIE L E V + E ++EA ++ + A EK+ Sbjct: 396 EHFLTIILKESERLQTLVEELLDLSKIEQHGFQLQLEDVDVAEVIAEAAAVFRQKAEEKQ 455 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 I +R + I D +KQI +N+L+NA+ +TP GQ+ + E +I V+D Sbjct: 456 IDLRVEALPGLV-IRGDRNRLKQILINLLANALAYTPEHGQVAVEAEEKEKEVLI-HVKD 513 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ E+ + + F +I ++ GTGLGL + K +V+A+ G + S +GT+ Sbjct: 514 TGIGIEEKEIPRIFERFYRIDKARSRDSGGTGLGLSIVKHLVEAHHGYITVASEVGRGTV 573 Query: 804 IEIIFP 809 I FP Sbjct: 574 FTIHFP 579 >gi|170721287|ref|YP_001748975.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619] gi|169759290|gb|ACA72606.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619] Length = 1155 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 135/248 (54%), Gaps = 3/248 (1%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E Q + +L ++ S +KS+FLA +SHE+RTPL + + ++++ G L + Sbjct: 465 ELMQAQQELQARADELQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENGEGNL-SAE 523 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +++A I +GN +L+++ND+LDI+K+E+GK+ + E L+ V + A K Sbjct: 524 QVKFAESIYSAGNDLLNLINDILDIAKVEAGKLEVRPETTQLERLVEGLRGMFLPLAEHK 583 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + + ++P L D + ++QI N+LSNAI FT G Q+ ++ +H + ++ V Sbjct: 584 GLAFEVNVEPHVPVTLFTDRQRLEQILKNLLSNAIKFTDHG-QVSLTISHQAGTGIVFAV 642 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RD+G+G+ + + F Q+ S R GTGLGL +++ + G+ + S P +G Sbjct: 643 RDSGIGIAADQQQAIFGAFHQVDGSSNRRYGGTGLGLSISRDLAHLLGGQISVDSNPGQG 702 Query: 802 TLIEIIFP 809 ++ + P Sbjct: 703 SVFSLTMP 710 >gi|320200221|gb|EFW74809.1| Sensor protein torS [Escherichia coli EC4100B] Length = 904 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|237732270|ref|ZP_04562751.1| sensor protein RcsC [Citrobacter sp. 30_2] gi|226907809|gb|EEH93727.1| sensor protein RcsC [Citrobacter sp. 30_2] Length = 948 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 83/258 (32%), Positives = 133/258 (51%), Gaps = 7/258 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PSG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ S + + Sbjct: 561 VRKQLGLYCFIDPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVQCSGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHP 816 G+ + PLY +P Sbjct: 679 GMGSQFTLRIPLYGAQYP 696 >gi|197248253|ref|YP_002146648.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211956|gb|ACH49353.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 920 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 17/256 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L+ AKK AE+ + KS L +SHE+RTP+ ++G E+++ P IE Sbjct: 377 ERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQT-------TPLNIE 429 Query: 626 YANYIDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 D + N +L I+N+LLD S+IESG LH E +L + +A+ +Q A K Sbjct: 430 QQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSK 489 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ +RT ++P D ++QI +N+L NA+ FT +GG I T E++I V Sbjct: 490 KLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG--IRLTVKRHEEQLIFLV 547 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G G+ + + F Q + Q GTG+GL +A ++ G + S P G Sbjct: 548 SDSGKGIEIQQQSQIFTAFYQADTNSQ----GTGIGLTIASSLAKMMGGNLTLKSVPGVG 603 Query: 802 TLIEIIFPLYDTSHPH 817 T + ++ PL + P Sbjct: 604 TCVSLVLPLQEYQPPQ 619 >gi|168022780|ref|XP_001763917.1| sensory histidine protein kinase [Physcomitrella patens subsp. patens] gi|162684922|gb|EDQ71321.1| sensory histidine protein kinase [Physcomitrella patens subsp. patens] Length = 379 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 75/259 (28%), Positives = 135/259 (52%), Gaps = 14/259 (5%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ +L ++K AE+ S KSDFLA +SHEIRTP+ I+G + ++ +P Sbjct: 5 ELRKANEELQVSQKKAEQASHAKSDFLANMSHEIRTPIHGILGLTALLLESDL----SPD 60 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 E + +L+L I+N +LD++KIE+G++ + P ++ + VS ++Q A ++ Sbjct: 61 QTESLQSVKECADLLLHIINSVLDLAKIEAGRLEVEKVPFNIRKMVSSTFRMLQARAQQR 120 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEE-- 736 + + ++P+ ++ D+ ++Q LN++ NA+ FT G +I++ T+ ++ Sbjct: 121 GLKLLWEVDKSVPQTLMGDVGKLQQCLLNLVGNALKFTHEGSVTVSVILTNDTTTAQDAP 180 Query: 737 ----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 V VRDTG+G++ L KPF Q S GTGLGL + + V+ G Sbjct: 181 DTMFVEFEVRDTGIGISQEILLDMFKPFKQADASTSRLYGGTGLGLCIVQRFVELLGGTI 240 Query: 793 YIFSTPAKGTLIEIIFPLY 811 + S KG+ + P + Sbjct: 241 WAESEVGKGSAFHFLLPFF 259 >gi|16330815|ref|NP_441543.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803] gi|1653308|dbj|BAA18223.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803] Length = 674 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 82/231 (35%), Positives = 125/231 (54%), Gaps = 7/231 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHE+RTPL AIIG+SE++ + L + + + I RSG +L ++NDL Sbjct: 438 KSIFLANMSHELRTPLNAIIGYSEMLIEEA-EDLDSEELVPDLDKILRSGKSLLALINDL 496 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQ--LYANEKRILIRTSFANNIPRILADLR 702 LDISKIE+GKM L+ E +L E ++ + + L N ++ + S + + DL Sbjct: 497 LDISKIEAGKMELYLETFNLKELIAGILDTISPLLKNNNNKLEVEISLES--EEVYGDLI 554 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPF 760 ++Q LN+LSNA FT G I +E+ + +V+DTG+G+T ++ K +PF Sbjct: 555 KLRQGILNLLSNASKFTKDGIISFIVEEFKVDEKDWLSFQVKDTGIGLTEEQMSKLFQPF 614 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 Q +S + GTGLGL + + G Y+ S G+ I P Y Sbjct: 615 TQADSSTTRKYGGTGLGLAITRKFCQMMGGDIYLTSEIGVGSSFTIKLPKY 665 >gi|191166564|ref|ZP_03028393.1| TMAO reductase system sensor TorS [Escherichia coli B7A] gi|190903369|gb|EDV63089.1| TMAO reductase system sensor TorS [Escherichia coli B7A] Length = 904 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|300819426|ref|ZP_07099623.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 107-1] gi|331667386|ref|ZP_08368250.1| TMAO reductase sytem sensor TorS [Escherichia coli TA271] gi|300528022|gb|EFK49084.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 107-1] gi|331064971|gb|EGI36866.1| TMAO reductase sytem sensor TorS [Escherichia coli TA271] Length = 904 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|260449861|gb|ACX40283.1| Hpt sensor hybrid histidine kinase [Escherichia coli DH1] Length = 899 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 417 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 472 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 473 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 529 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 530 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 587 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 588 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 643 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 644 RLPLRVATAP 653 >gi|260854697|ref|YP_003228588.1| hybrid sensory histidine kinase TolS in two-component regulatory system with TorR [Escherichia coli O26:H11 str. 11368] gi|257753346|dbj|BAI24848.1| hybrid sensory histidine kinase TolS in two-component regulatory system with TorR [Escherichia coli O26:H11 str. 11368] Length = 914 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 432 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 487 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 488 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 544 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 545 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 602 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 603 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 658 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 659 RLPLRVATAP 668 >gi|171060877|ref|YP_001793226.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170778322|gb|ACB36461.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 1110 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 97/372 (26%), Positives = 176/372 (47%), Gaps = 46/372 (12%) Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 +A+++R+ + NR +LFGY + +I + + P Y +++ R Sbjct: 339 LALVSRDARVTDINRRFVQLFGYTLAEI--PTLAHWWQLAYPDAT--YRAAVIA---RWN 391 Query: 525 LEKITLGSTK-----EEKLLSLR------IIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 ++ + T+ +E ++ R ++I + + T DI+E ++ + + Sbjct: 392 AARVAVAQTRGDIAPQEYHVTCRDGSVRTLLIAGIDQDDGFMATFFDITEIRRAEQHVRA 451 Query: 574 -----AKKIAEKES-------------SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +++A++ KS FLA +SHEIRTP+ AI+G + +++ Sbjct: 452 LNADLERRVADRTGELLQAREAAEAANRAKSAFLANMSHEIRTPMNAIVGLAHLLRRDAH 511 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P+ R ID +G+L L ++ND+LD+SKIE+GK+ L P SL ++ +LV Sbjct: 512 EPVAAQRL---GQMIDAAGHL-LQVINDILDLSKIEAGKLQLEQLPFSLQALLARNCALV 567 Query: 676 QLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQII----ISTT 730 A K + + + +P L+ D + Q LN+L NA+ FT G ++ ++ Sbjct: 568 ADRARAKGLAVAIEV-DGVPDALSGDPTRLSQALLNLLGNAVKFTEQGSIVLRAECVARG 626 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + V RVRDTG+G+ +L++ PF Q S R GTGLGL + + + G Sbjct: 627 TDDHLTVRFRVRDTGIGIAPDKLDQLFAPFMQADASTTRRFGGTGLGLAITQRLAATMGG 686 Query: 791 KFYIFSTPAKGT 802 + + S P +G+ Sbjct: 687 EVGVRSEPGRGS 698 >gi|71907402|ref|YP_284989.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71847023|gb|AAZ46519.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 1169 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 83/248 (33%), Positives = 138/248 (55%), Gaps = 13/248 (5%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP-LGNPRYIEYA 627 +L HAK+ AE + KS+FLA +SHEIRTP+ +I+G ++++ GP + +PR +Y Sbjct: 690 TELMHAKQAAEAANRAKSEFLATMSHEIRTPMNSILGMAQIL----CGPDVSDPRSRDYG 745 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I SG +L I+ND+LD++K+ESG++ L P + + ++L + A K ++I Sbjct: 746 RVILESGKTLLTILNDVLDLAKVESGRVELDPTPWLPQQLAQDILALFRGVAQGKGLIIS 805 Query: 688 TSFANNIPRI---LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--V 741 + + PR LAD +KQ+ N++SNA+ FT G I IS +N+ L V Sbjct: 806 AEW--DGPRTQEYLADGYRLKQMLSNLVSNALKFTAIGSVDIRISEIDRTNDFATLEFSV 863 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+++ + + +PF Q S R G+GLGL + + + + G+ + S KG Sbjct: 864 TDTGIGISSEKQQGLFQPFTQADGSTTRRYGGSGLGLSIVRHLAELMGGEAGLESEEKKG 923 Query: 802 TLIEIIFP 809 + + P Sbjct: 924 SRLWFRIP 931 >gi|323185298|gb|EFZ70662.1| TMAO reductase sytem sensor TorS [Escherichia coli 1357] Length = 904 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 136/250 (54%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT GQI++ + T E+ ++ V D+G Sbjct: 535 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|320177232|gb|EFW52240.1| Two-component sensor protein RcsC [Shigella dysenteriae CDC 74-1112] Length = 787 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 283 DVSSRAKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 341 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 342 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 398 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 399 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 456 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 457 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 516 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 517 GMGSQFTVRIPLYGAQYPQ 535 >gi|253773977|ref|YP_003036808.1| hybrid sensory histidine kinase TorS [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253325021|gb|ACT29623.1| Hpt sensor hybrid histidine kinase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] Length = 899 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 417 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 472 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 473 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 529 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 530 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 587 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 588 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 643 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 644 RLPLRVATAP 653 >gi|317027783|ref|XP_001399984.2| sensor histidine kinase/response regulator [Aspergillus niger CBS 513.88] Length = 2354 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 84/281 (29%), Positives = 141/281 (50%), Gaps = 29/281 (10%) Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAK------KIAEKESSH-----------KSDFLA 590 L F ++ + S + +K L+ A+ K+AE E+ H KS FLA Sbjct: 1852 LLFREVRKVSATNASMVEAQKRALAQAREAEQKAKVAEAEAKHNVKLKEDAAKAKSIFLA 1911 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SH++RTP+ +IG SE++K + + EY I + +L ++ND+LD SK+ Sbjct: 1912 NISHDLRTPMNGVIGLSELLKGTKL----DREQDEYVESIRVCADTLLTLINDILDFSKL 1967 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP---RILADLRSVKQI 707 E+GKM + P+++ E +SE + ++ Y + R L + +P +L D + QI Sbjct: 1968 EAGKMKISTVPLNIRETISEVVRALR-YTHRDRGLETIEDLDKVPPELVVLGDPVRLHQI 2026 Query: 708 ALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +N+LSN+ FTP G + +S + V DTG+G++ + + +PF Q Sbjct: 2027 FMNLLSNSYKFTPKGSVTVRAKVSREGKGRVRLECSVSDTGIGISEEQKSRLFRPFSQAD 2086 Query: 765 NSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLI 804 NS G+GLGL + KA++ D G ++ ST GT + Sbjct: 2087 NSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTSGVGTTV 2127 >gi|260867202|ref|YP_003233604.1| hybrid sensory histidine kinase TolS in two-component regulatory system with TorR [Escherichia coli O111:H- str. 11128] gi|257763558|dbj|BAI35053.1| hybrid sensory histidine kinase TolS in two-component regulatory system with TorR [Escherichia coli O111:H- str. 11128] Length = 914 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 432 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 487 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 488 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 544 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 545 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 602 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 603 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 658 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 659 RLPLRVATAP 668 >gi|254161106|ref|YP_003044214.1| hybrid sensory histidine kinase TorS [Escherichia coli B str. REL606] gi|242376807|emb|CAQ31520.1| TorS monomer, subunit of TorS sensory histidine kinase [Escherichia coli BL21(DE3)] gi|253973007|gb|ACT38678.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli B str. REL606] gi|253977221|gb|ACT42891.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli BL21(DE3)] Length = 914 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 432 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 487 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 488 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 544 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 545 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 602 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 603 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 658 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 659 RLPLRVATAP 668 >gi|217037915|gb|ACJ76429.1| hybrid sensor kinase RscS [Aliivibrio fischeri] Length = 943 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 106/390 (27%), Positives = 186/390 (47%), Gaps = 47/390 (12%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + E E +L + E + I I++++ + N++ S L G +EDI K Sbjct: 269 RSEKEKTKLALVAEHAHNAIFILDKQSKLTWINQSYSVLSGNTLEDIKGKDL-------- 320 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL-------------LSLRIIIKKLPFSS 552 PSV+ L +I ++ L+ + G++ +L +S+ I K Sbjct: 321 PSVLQ--LDKIQHANIFTLLQSLKAGTSVSFELTNNHKDGTLYWIDVSVTPIFKPNGNIM 378 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 Y + DI++ K+ ++KL A A+ + KS FLA +SHE+RTPL I+G +++I++ Sbjct: 379 HYVVVERDITKKKELEDKLIKAADKADVSNKAKSTFLATMSHELRTPLNGILGMAQIIES 438 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + + + + SG+ +L ++ND+LD SKIE K+ L+ ++ + Sbjct: 439 N----IKDEEQHKQIKVLLESGDHLLSLLNDILDFSKIEQNKLELNHASFYFNDVIDPIA 494 Query: 673 SLVQLYANEKRILI--------RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 + Q +K + +T F + PRI +QI N++SNA+ FT G Sbjct: 495 NTYQSICEDKGLQFIIDNNINEKTIFIGDKPRI-------RQIIFNLISNAVKFTHKGS- 546 Query: 725 IIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 I ++ +HT + V ++V+DTG+G+ L+ +PF Q S + GTGLGL + Sbjct: 547 ITLNFSHTLTAKGEQAVQIKVQDTGIGIRKKRLKHIFEPFIQAETSTTRQYGGTGLGLAI 606 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 K + D G + S+ KGT ++ PL Sbjct: 607 VKQLTDTMKGYISVNSSEGKGTCFTLVLPL 636 >gi|219870720|ref|YP_002475095.1| aerobic respiration control sensor protein ArcB [Haemophilus parasuis SH0165] gi|219690924|gb|ACL32147.1| aerobic respiration control sensor protein ArcB [Haemophilus parasuis SH0165] Length = 744 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 101/385 (26%), Positives = 187/385 (48%), Gaps = 25/385 (6%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-KPF 497 D R+N ++E + L S +A+ D + N+ G L NRA+ L G +++L P Sbjct: 101 DARLNV-ELEQQAEFLRSFFDASPDLVFYRNQHGEFLGCNRAMEVLTGRSEKELLHLTPK 159 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSC 553 ++ ++ +++ ++S + T E+ S + +R K+P+ + C Sbjct: 160 DIYPKETAKLILDTDRDTLIS-NTGVTYEQWIRHSNNKLSCFEIR----KVPYYDRVNEC 214 Query: 554 YSLTM--HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + + DI+E K+ +++ EK S KS +A +SHE+RTPL IIG S ++ Sbjct: 215 HCIMGFGRDITERKR-------YQEMIEKNSRDKSTLMATISHELRTPLNGIIGLSRILL 267 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 G L + EY I+ S + I +D++D+ KI+S ++ L V + +S Sbjct: 268 E---GELSAQQR-EYLKTINISAVSLGHIFSDIIDLEKIDSRRIELFRSEVEFSQLISNI 323 Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 L A +K+I + +N+P + D + QI N+++NA+ FTPSGG+I + Sbjct: 324 SHFANLMAEQKKIKFTIQYDDNLPDFVCVDNARLSQILWNLVNNAVKFTPSGGEISLKVE 383 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 ++ ++D+G+G+ E K F Q NSQ + +G+G+GL ++K + G Sbjct: 384 RRDHDHYAFILKDSGIGIKKSEQRKIFAMFYQSENSQGKKAQGSGIGLAISKRIARLMGG 443 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSH 815 + S +G++ +I + +H Sbjct: 444 DLTVESELNQGSVFTLIIQADEANH 468 >gi|16264090|ref|NP_436882.1| putative sensory histidine kinase protein [Sinorhizobium meliloti 1021] gi|15140215|emb|CAC48742.1| putative two-component sensor histidine kinase [Sinorhizobium meliloti 1021] Length = 917 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 111/386 (28%), Positives = 186/386 (48%), Gaps = 21/386 (5%) Query: 439 DTRINKRKMEIEVMQ----LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 ++ I K+K+E E + + + LE SDG + + E IL N ++F + LR Sbjct: 267 ESAIEKKKLEDEAERQRRTIAAALEVISDGFVLYDSEDRILVANSKYCEIFPSHKPNTLR 326 Query: 495 -KPFTVFLEQNTPSVMNHYLTEILS----LDLRQTLEKITLGSTKEEKLLS--LRIIIKK 547 + F +EQN M E S +D R L + G E++ +RI +K Sbjct: 327 GRSFREIVEQNLE--MGQVDLEGKSPQEWVDERVRLHRDPAGLVDEKRFGDKWVRISKRK 384 Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 +P ++ DI++ KQ + +L AK AE + KS FLA +SHE+RTPL AIIG+S Sbjct: 385 IPDGGTVAV-YTDITQLKQRQVELERAKSHAESANEAKSRFLASMSHELRTPLNAIIGYS 443 Query: 608 E-VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 E +I+ R + + + I +G +L ++ND+LD+SKIE+ KM + E S+ + Sbjct: 444 EMLIEEARDHE--DEELVPDLDKIASAGRHLLSLINDILDLSKIEANKMEVFLETFSVAD 501 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 + + + V F ++ + +D ++Q N+LSNA FT +GG++ Sbjct: 502 LLRDVAATVAPLMARNGNEFTQDFEADLGEMHSDQTKLRQNLFNLLSNAAKFT-NGGRVT 560 Query: 727 ISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + + ++ +V DTG+GM+ + E+ F Q S GTGLGL + ++ Sbjct: 561 LRVRREQRPDRDWLVFQVTDTGIGMSPEQQERLFNAFTQADASTTRNYGGTGLGLSITRS 620 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809 G + S KG++ + P Sbjct: 621 FCRMIGGVVTVESEVGKGSVFTMEVP 646 >gi|127511393|ref|YP_001092590.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4] gi|126636688|gb|ABO22331.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4] Length = 1230 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 86/253 (33%), Positives = 132/253 (52%), Gaps = 14/253 (5%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ K + L AK+ AE + +KS+FLA +SHEIRTP+ AIIG ++ + Sbjct: 694 THKDITRHKSNEVALLEAKQDAESANLYKSEFLANMSHEIRTPMNAIIGMLQLASRTQLT 753 Query: 617 PLGNPRYIEYANYIDRSG---NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 P + A+Y+D++G +L I+ND+LD SKIE+GK+ L LD+ + A+ Sbjct: 754 P-------QQADYLDKAGFSAQSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHALD 806 Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH 731 L L A EK + + IL D + Q+ +N+LSNA+ FT SG ++ Sbjct: 807 LNALKAQEKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQSGEIELGCEDVG 866 Query: 732 TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + + L+ VRDTG+G++ + E F Q S + GTGLGL ++K +V Sbjct: 867 ERDHRITLKFWVRDTGIGISKEQQESLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMG 926 Query: 790 GKFYIFSTPAKGT 802 G + S G+ Sbjct: 927 GTMQVQSELGVGS 939 >gi|317483762|ref|ZP_07942704.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924994|gb|EFV46138.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 988 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 81/245 (33%), Positives = 127/245 (51%), Gaps = 8/245 (3%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E +L +++ A + + KS+FLA +SHEIRTP+ IIG + + QR P Sbjct: 599 AELAARNAELLKSQQEALEATRAKSEFLATMSHEIRTPMNGIIGLT-YLALQRECPAA-- 655 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 +Y ID + +L I+ND+LD SK+ESGKM+ P +L E + + + E Sbjct: 656 -IADYLAKIDVTAKTLLRIINDILDFSKVESGKMDFEEIPFTLSEVLDNTLQMFTHAVRE 714 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL 739 K + +R +P+ ++ D + QI LN++ NA+ FT G + + T + V L Sbjct: 715 KGLSLRFDVGEGVPQSLVGDPTRLGQILLNLVGNAMKFTHEGSVTLFVRCVETDQQTVTL 774 Query: 740 --RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 VRDTG+G+ +L +PF Q S R GTGLGL +A+ +V G ++ S Sbjct: 775 GFAVRDTGIGIPADKLPSLFQPFIQADMSVSRRYGGTGLGLAIARVLVQHMGGTIHVRSV 834 Query: 798 PAKGT 802 KG+ Sbjct: 835 VGKGS 839 >gi|261324039|ref|ZP_05963236.1| histidine kinase [Brucella neotomae 5K33] gi|261300019|gb|EEY03516.1| histidine kinase [Brucella neotomae 5K33] Length = 843 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 140/254 (55%), Gaps = 4/254 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT D+++ + + L + E K+DF+ VS+E+R+PLT IIGF+E+++ F Sbjct: 583 LTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAF 642 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L N R +EY ++I S +++L IVND+LD++ +++G M L VS+ EA+S A S V Sbjct: 643 GSL-NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRV 701 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + I + A+++ AD V+Q+ N+LSNA+++ P G I++ Sbjct: 702 SERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVAR-DGA 760 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +V+ V D G GM + L+ K F PN + G GLGL + K+ V+ + G+ I Sbjct: 761 DVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRR--RGAGLGLAIVKSFVELHGGRVEID 818 Query: 796 STPAKGTLIEIIFP 809 + +GT + FP Sbjct: 819 TGEERGTTVICRFP 832 >gi|159900627|ref|YP_001546874.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893666|gb|ABX06746.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 3470 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 128/225 (56%), Gaps = 1/225 (0%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K DF+A VSHE+RTPLT I GF +++ G L +P+ E N + + ++ +V DL Sbjct: 3233 KRDFVATVSHELRTPLTPIRGFVDLLLLGAVGQLSDPQR-EMLNTVKTNAMRMVGLVEDL 3291 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 L+I ++E+GK+ L+ P +++ V + ++ L +K + ++ + +P I D + + Sbjct: 3292 LEIGRLEAGKIVLNTAPNQINQLVRDIVATWGLEIEKKNMTLKLELDDTLPLIEYDSKRI 3351 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 Q+ N++SNAI +T +GG +II T ++ + L V+DTGVG+T + + K F + Sbjct: 3352 GQVLTNMVSNAIKYTYAGGDVIIRTFINEDKMIQLDVKDTGVGLTAEQQKSMFKRFYRAD 3411 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + GTGLGL +AK+ ++ + G ++ S +G+ P Sbjct: 3412 SPLRDEVGGTGLGLSIAKSFIELHNGDMWVQSVYGEGSTFSFSLP 3456 >gi|163851209|ref|YP_001639252.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163662814|gb|ABY30181.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 1125 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 133/248 (53%), Gaps = 12/248 (4%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE+ S+ KS+FLA +SHEIRTPL I+G+++++ ++R + R +E I SG + Sbjct: 583 AERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDRRDHDPEDQRRLE---LIRVSGESL 639 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696 L +VND+LD+SKIE+G++ L P +L + + + +++++ A + + + ++P Sbjct: 640 LTVVNDVLDVSKIEAGQLELDPLPFALGKLIEDTVAIMRGTALKSALTVEARIDPDLPAS 699 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--------NEEVILRVRDTGVGM 748 ++ D ++Q+ N+L+NA+ FTP+G ++ + S E + + DTG+G+ Sbjct: 700 VVGDANRLRQVLFNLLNNAVKFTPAGSVVLTARYEGSVPGADGGTAEALRFEISDTGIGI 759 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + KPF Q+ S R G+GLGL + +V G + S G+ Sbjct: 760 APSQRHRLFKPFSQVDGSISRRFGGSGLGLAICHRLVTMMGGAIGVESREGAGSTFWFTL 819 Query: 809 PLYDTSHP 816 L + P Sbjct: 820 ALPRATTP 827 >gi|119944301|ref|YP_941981.1| hybrid sensory histidine kinase BarA [Psychromonas ingrahamii 37] gi|119862905|gb|ABM02382.1| Hpt sensor hybrid histidine kinase [Psychromonas ingrahamii 37] Length = 926 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 130/241 (53%), Gaps = 13/241 (5%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L KK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q I+Y Sbjct: 276 ELDITKKKAQQAALVKSEFLANMSHELRTPLNGVIGFARQLLKTQL-----TTNQIDYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS +L I+ND+LD SK+E+GK L P L + + E + L+ A+EK + + Sbjct: 331 TIERSAGNLLKIINDILDFSKLEAGKFTLEHIPFDLRDCIDETMHLLAPSAHEKNLELSL 390 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHTSNEEVI-LRV 741 +P + D ++QI N++ NAI FT G Q I T+ N+ + + + Sbjct: 391 IVDPEVPYEVFGDAMRLQQILTNLIGNAIKFTEKGDIKIQIQRIEEQTNRDNKVTLKIMI 450 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G+G++ + + K FGQ S + GTGLGL + + +V G+ + S P +G Sbjct: 451 SDSGIGISKKQQAQLFKAFGQADTSITRQYGGTGLGLVITQKLVKEMQGRIELISIPEQG 510 Query: 802 T 802 + Sbjct: 511 S 511 >gi|86356048|ref|YP_467940.1| two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CFN 42] gi|86280150|gb|ABC89213.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CFN 42] Length = 760 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 89/286 (31%), Positives = 145/286 (50%), Gaps = 17/286 (5%) Query: 532 STKE-EKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 ST E +++ R ++ + P S L D++E + A++ AE S+ KS Sbjct: 188 STPEGQRIFLWRDVVTRDPGSGHLLLQSVARDVTEERLIAQSRESARQKAEYNSAAKSRL 247 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY---IDRSGNLVLDIVNDLL 645 LA VSHE+RTPL+ I+G + ++ R E NY I +SG+ + +V DLL Sbjct: 248 LATVSHEVRTPLSGILGMTHLLAETRL-------TQEQQNYLANIRQSGHALTQLVEDLL 300 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRSV 704 D S IE G+ LH SL + + + ++ A+EK I I + ++++P ++ D + Sbjct: 301 DFSTIEVGRFELHPRSESLRKLLESVVEMLAHRAHEKGIEIGATVSSDVPENMSFDAARL 360 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +Q+ N++ NA+ FT +GG I + + N +++ V DTG GMT E + F Q Sbjct: 361 RQVLFNVIGNAVKFTQAGGVFIRVSLNAGN--LLITVTDTGPGMTAEEQARVFGEFEQGG 418 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 N G GTGLGL ++ ++ G + S KG+ I FP+ Sbjct: 419 NVADKSG-GTGLGLAISARIMREFAGALTVTSQKGKGSTFTIRFPI 463 >gi|332667571|ref|YP_004450359.1| PAS/PAC sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] gi|332336385|gb|AEE53486.1| PAS/PAC sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] Length = 857 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 101/386 (26%), Positives = 187/386 (48%), Gaps = 35/386 (9%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS-------- 507 S++EA+ D + I+ +G I N A++ + G + ++ F+++ + + Sbjct: 206 SLIEASLDPLITISTKGKITDHNEALANITGKTRQQLIGSDFSLYFTEPEKASEVYEEVF 265 Query: 508 ----VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK----------KLPFSSC 553 V N+ LT I+ +L L ++ ++ +L ++ + +L + Sbjct: 266 EKGFVTNYPLT-IIDGELTNVLFNGSVYKDEKGNVLGAVVVARDITAQKRIESELIEAKV 324 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 ++ I+E Q + A +IA K FL+ +SHEIRTP+ AIIGF++V+ Sbjct: 325 FAELAKGIAETAQ--SSAESATQIAVDAVKAKQQFLSNMSHEIRTPMNAIIGFTKVVLKT 382 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + + EY I SG+ ++ ++ND+LD++K+++GKM+ P L +++ + Sbjct: 383 EL----SAKQKEYLTAIKMSGDALIVLINDILDLAKVDAGKMDFEETPFRLAFSITAMLH 438 Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST--T 730 L + EK + + + IP +L D + QI LN++SNA+ FT + GQI +S Sbjct: 439 LFETKIQEKNLALVKVYDEEIPEVLVGDPVRLHQIILNLVSNAVKFT-NKGQITVSVRML 497 Query: 731 HTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 H ++V + V DTG+G+T ++ + F Q + GTGLGL +AK +V+ Sbjct: 498 HADADKVTIEFAVADTGIGITKDKIPTIFENFQQASSGTSRLYGGTGLGLAIAKQLVEKQ 557 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTS 814 G + S +G+ I T+ Sbjct: 558 GGTIRVESVVEQGSTFSFILDFRKTN 583 >gi|317473351|ref|ZP_07932646.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316899187|gb|EFV21206.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 852 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 86/244 (35%), Positives = 132/244 (54%), Gaps = 18/244 (7%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA-N 628 +L A++ A K S KS+FLA +SH+IRTP+ AI G + + + +P+ ++ Sbjct: 330 ELDKAQQKALKASKAKSEFLANMSHDIRTPMNAITGMTAIATAH----IDDPKQVKNCLR 385 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR----I 684 I S +L ++ND+LD+SKIESGK+ L E +SL E V +S++Q K+ + Sbjct: 386 KIALSSRHLLGLINDVLDMSKIESGKLTLTAEQISLREVVDGIVSIMQPQTKAKQQSFDV 445 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI--IISTTHTSNEEVILR-- 740 I F N+ D + QI LN+LSNA +TP G I IS ++ E +R Sbjct: 446 HIENIFTENV---WCDGIRLNQILLNLLSNATKYTPEKGSIRLFISEENSPRGEDYVRLH 502 Query: 741 --VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 VRD G+GM+ L+K + + + ++ + EG GLG+ + K +VDA G + S P Sbjct: 503 INVRDNGIGMSPEFLKKIYQSYSRADGTRTRKTEGAGLGMAITKYIVDAMDGTIDVQSEP 562 Query: 799 AKGT 802 KGT Sbjct: 563 NKGT 566 >gi|89107844|ref|AP_001624.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli str. K-12 substr. W3110] gi|90111200|ref|NP_415513.2| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli str. K-12 substr. MG1655] gi|157160513|ref|YP_001457831.1| hybrid sensory histidine kinase TorS [Escherichia coli HS] gi|170080652|ref|YP_001729972.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli str. K-12 substr. DH10B] gi|188493988|ref|ZP_03001258.1| sensor histidine kinase/response regulator TorS [Escherichia coli 53638] gi|238900253|ref|YP_002926049.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli BW2952] gi|331641526|ref|ZP_08342661.1| TMAO reductase sytem sensor TorS [Escherichia coli H736] gi|17380324|sp|P39453|TORS_ECOLI RecName: Full=Sensor protein torS gi|85674812|dbj|BAA36135.2| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli str. K12 substr. W3110] gi|87081816|gb|AAC74078.2| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli str. K-12 substr. MG1655] gi|157066193|gb|ABV05448.1| sensor histidine kinase/response regulator TorS [Escherichia coli HS] gi|169888487|gb|ACB02194.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli str. K-12 substr. DH10B] gi|188489187|gb|EDU64290.1| sensor histidine kinase/response regulator TorS [Escherichia coli 53638] gi|238861441|gb|ACR63439.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli BW2952] gi|309701271|emb|CBJ00571.1| Two-component sensor kinase and response regulator [Escherichia coli ETEC H10407] gi|323938097|gb|EGB34359.1| TMAO reductase sytem sensor TorS [Escherichia coli E1520] gi|323942907|gb|EGB39072.1| TMAO reductase sytem sensor TorS [Escherichia coli E482] gi|323962878|gb|EGB58453.1| TMAO reductase sytem sensor TorS [Escherichia coli H489] gi|323973132|gb|EGB68324.1| TMAO reductase sytem sensor TorS [Escherichia coli TA007] gi|331038324|gb|EGI10544.1| TMAO reductase sytem sensor TorS [Escherichia coli H736] Length = 914 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 432 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 487 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 488 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 544 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 545 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 602 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 603 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 658 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 659 RLPLRVATAP 668 >gi|161367622|ref|NP_286929.2| hybrid sensory histidine kinase TorS [Escherichia coli O157:H7 EDL933] gi|162139802|ref|NP_309175.2| hybrid sensory histidine kinase TorS [Escherichia coli O157:H7 str. Sakai] gi|195935251|ref|ZP_03080633.1| hybrid sensory histidine kinase TorS [Escherichia coli O157:H7 str. EC4024] gi|254792250|ref|YP_003077087.1| hybrid sensory histidine kinase TorS [Escherichia coli O157:H7 str. TW14359] gi|291281991|ref|YP_003498809.1| hybrid sensory histidine kinase TorS [Escherichia coli O55:H7 str. CB9615] gi|17368203|sp|P58356|TORS_ECO57 RecName: Full=Sensor protein torS gi|254591650|gb|ACT71011.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli O157:H7 str. TW14359] gi|290761864|gb|ADD55825.1| hybrid sensory histidine kinase TorS [Escherichia coli O55:H7 str. CB9615] Length = 914 Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 136/250 (54%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 432 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 487 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 488 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 544 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT GQI++ + T E+ ++ V D+G Sbjct: 545 TAIADDVPTALMGDPRRIRQVITNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGC 602 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 603 GIDPAKLAEIFQPFIQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 658 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 659 RLPLRVATAP 668 >gi|295681521|ref|YP_003610095.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] gi|295441416|gb|ADG20584.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] Length = 942 Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 131/233 (56%), Gaps = 6/233 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ +L+ AK+ A+ + KS+FLA +SHE+RTPL I+G+++++K + + Sbjct: 460 RERTAELAVAKERADAANQAKSEFLAHMSHELRTPLNGILGYAQILKRD---TTLDQHQL 516 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I RSG +L +++D+LDI+KIE+G+M L+ V L++ VS +++ A EK + Sbjct: 517 DGLTVIQRSGEHLLTLIDDILDIAKIEAGRMELNLSDVPLEQFVSFIAETIRVKATEKGL 576 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 ++P + D ++Q LN+LSNAI FT G + + + VRD Sbjct: 577 DFVCEMPPDLPACVRVDEIRLRQALLNLLSNAIRFTEKGS-VRLRVAFLPPARLCFEVRD 635 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 TG+G+ LE+ PF Q+ + + G GTGLGL +++ +V G+ ++ S Sbjct: 636 TGIGIDQGRLEEIFSPFEQVSDDRHRFG-GTGLGLAISRQLVRLMGGEIHVES 687 >gi|167896670|ref|ZP_02484072.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 7894] Length = 927 Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 88/264 (33%), Positives = 133/264 (50%), Gaps = 10/264 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DIS K+ + KL A+ A++ + KS FLA +SHEIRTPL AIIG E+++ Sbjct: 418 TLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRS--- 474 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + E + ++ N +L I+ND+LD+SK+ESG+M L P + + E + Sbjct: 475 PLSEQQS-ERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYA 533 Query: 677 LYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIII----STTH 731 A K + + +S + R A D ++QI N++ NAI FT G I I + Sbjct: 534 PLAESKGLALLSSIGEGVARHYAGDPTRIRQILSNLIGNAIKFTER-GHISIDVHRAKAA 592 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + V DTG+G+ + + Q S R G+GLGLPL + +V G Sbjct: 593 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 652 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSH 815 I S P GT + + PL + H Sbjct: 653 IEIDSLPDFGTTVTVALPLREARH 676 >gi|149194248|ref|ZP_01871345.1| histidine kinase [Caminibacter mediatlanticus TB-2] gi|149135423|gb|EDM23902.1| histidine kinase [Caminibacter mediatlanticus TB-2] Length = 1023 Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 126/226 (55%), Gaps = 12/226 (5%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + + K +E+ + KS FLA +SHEIRTPL I+GF E++K P EY + I Sbjct: 377 IQESIKKSEEATKAKSLFLANMSHEIRTPLNGILGFLEILKTTDLTPEQE----EYVDTI 432 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNL-HFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 +S +L IVN++LDISKIES K+ + E +LDE S + + A+ K I T Sbjct: 433 SQSAKNLLQIVNNILDISKIESNKVTIEEIEFKALDEFES-TLEIFATPASHKHIQYVTE 491 Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG----QIIISTTHTSNEEVILRVRDT 744 + N+P IL D+ +K+I N+++NAI FTP G +I++ + ++ VRDT Sbjct: 492 ISPNMPSILKGDILKIKEIITNLINNAIKFTPENGIISVKILLQEIINNKAKIYFEVRDT 551 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 G+GM+ + K + F Q S + GTGLGL + K+ ++ MG Sbjct: 552 GIGMSEAQKAKIFEAFTQADASVTRKYGGTGLGLTIVKSYLEM-MG 596 >gi|148262093|ref|YP_001228799.1| multi-sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146395593|gb|ABQ24226.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 758 Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 98/399 (24%), Positives = 190/399 (47%), Gaps = 53/399 (13%) Query: 436 EDVDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF-------- 485 E ++ ++ R E+ E+ +L ++L ++G+ + +++ ++ N A +F Sbjct: 391 ELLEKKVTTRTAELSMEMGRLEAVLTCMAEGVVVTDKDNRVILFNPAAQNIFDLVPFRVV 450 Query: 486 GYPVEDILR-KPFTVFL-------EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 G P+E + R FT+ L E P E+ L+ L + + + Sbjct: 451 GQPIEQVCRVGEFTLLLDCIREIRESGGPVASRQEEMEVKGKKLKINLSPMADDAGQ--- 507 Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH-KSDFLARVSHEI 596 F+ +++ DI+ AE+E K+DF++ VSHE+ Sbjct: 508 ------------FAGVV-MSIRDIT---------------AEEEVDRMKTDFISTVSHEL 539 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 +TPLT++ G +++ N+ G + + R+ ++ ++N++LDISKIESG M Sbjct: 540 KTPLTSMKGSLQLLLNR--GKWLTDTERQLLSVCLRNTQRLIRLINEILDISKIESGGMK 597 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716 ++P+S+ E V A ++ +A + I I S +++P I D + Q+ N+LSNA+ Sbjct: 598 FDYKPLSMGELVVYAAEEIKGFALSRNISIVNSVGDHLPLIFGDHDRLIQVLTNLLSNAV 657 Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 F+P G +++ N +++ V D G + + EK K F Q+ N+ Q++ GTGL Sbjct: 658 KFSPEGKVVMVLAEREGN-YLLVSVADRGKVIQWADREKLFKKFQQLNNADQLQQGGTGL 716 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 GL + K +++ + G+ Y + G + P+++ H Sbjct: 717 GLAICKEIIEKHHGRIYYNAGKEGGNVFTFTVPIFEEDH 755 >gi|194438003|ref|ZP_03070096.1| TMAO reductase system sensor TorS [Escherichia coli 101-1] gi|256023304|ref|ZP_05437169.1| hybrid sensory histidine kinase TorS [Escherichia sp. 4_1_40B] gi|301022622|ref|ZP_07186493.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 196-1] gi|301646370|ref|ZP_07246255.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 146-1] gi|307137626|ref|ZP_07496982.1| hybrid sensory histidine kinase TorS [Escherichia coli H736] gi|312971125|ref|ZP_07785304.1| TMAO reductase sytem sensor TorS [Escherichia coli 1827-70] gi|194422939|gb|EDX38933.1| TMAO reductase system sensor TorS [Escherichia coli 101-1] gi|299881194|gb|EFI89405.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 196-1] gi|301075406|gb|EFK90212.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 146-1] gi|310336886|gb|EFQ02053.1| TMAO reductase sytem sensor TorS [Escherichia coli 1827-70] gi|315135644|dbj|BAJ42803.1| hybrid sensory histidine kinase TorS [Escherichia coli DH1] gi|315619081|gb|EFU99662.1| TMAO reductase sytem sensor TorS [Escherichia coli 3431] gi|332342435|gb|AEE55769.1| TMAO reductase sytem sensor protein TorS [Escherichia coli UMNK88] Length = 904 Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|315179123|gb|ADT86037.1| sensor histidine kinase/response regulator [Vibrio furnissii NCTC 11218] Length = 915 Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 83/252 (32%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 257 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQA-DYLQ 311 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L I+ND+LD SK+E+GK+ L P E + E ++L A+EK + I Sbjct: 312 TIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQETLEEVVNLQATSAHEKGLEITL 371 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDT 744 IP ++ D ++Q+ N++ N+I FT G I + ++V+ VRDT Sbjct: 372 KVDPKIPAGLVGDPLRIQQVLTNLVGNSIKFTERGNIDISVEMRSQRDDVVELQFMVRDT 431 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 432 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTF 491 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 492 WFTLRLHITEMP 503 >gi|168463198|ref|ZP_02697129.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195634353|gb|EDX52705.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 920 Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 17/256 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L+ AKK AE+ + KS L +SHE+RTP+ ++G E+++ P IE Sbjct: 377 ERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQT-------TPLNIE 429 Query: 626 YANYIDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 D + N +L I+N+LLD S+IESG LH E +L + +A+ +Q A K Sbjct: 430 QQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSK 489 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ +RT ++P D ++QI +N+L NA+ FT +GG I T E++I V Sbjct: 490 KLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG--IRLTVKRHEEQLIFLV 547 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G G+ + + F Q + Q GTG+GL +A ++ G + S P G Sbjct: 548 SDSGKGIEIQQQSQIFTAFYQADTNSQ----GTGIGLTIASSLAKMMGGNLTLKSVPGVG 603 Query: 802 TLIEIIFPLYDTSHPH 817 T + ++ PL + P Sbjct: 604 TCVSLVLPLQEYQPPQ 619 >gi|300929237|ref|ZP_07144716.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 187-1] gi|300462803|gb|EFK26296.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 187-1] Length = 904 Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|73855027|gb|AAZ87734.1| sensor protein torS [Shigella sonnei Ss046] Length = 904 Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|302036587|ref|YP_003796909.1| histidine kinase [Candidatus Nitrospira defluvii] gi|300604651|emb|CBK40983.1| Histidine kinase [Candidatus Nitrospira defluvii] Length = 589 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/259 (29%), Positives = 140/259 (54%), Gaps = 10/259 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ +L AK A+ + KS+FLA +SHEIRTP+ AIIG ++++ P Sbjct: 50 ELQRRVEELQRAKDAADVANRAKSEFLASMSHEIRTPMNAIIGMADLLWETTL----TPE 105 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +Y R+G +L ++ND+LD+SK+ESG+++L L E + + ++ L ANEK Sbjct: 106 QRKYLRIFRRAGASLLSLINDILDLSKVESGRLDLDSIDFDLSELIDKTSEMLALRANEK 165 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEV 737 + + AN++P ++ D + QI LN+L NAI FT G +++S T+ + + Sbjct: 166 GLELVCHLANDVPCHLIGDPNRLYQILLNLLGNAIKFTEK-GSVVMSITNDPELRTPGAI 224 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + DTG+G+ + +++ + F Q ++ + GTGLGL +++ + G+ ++ S Sbjct: 225 RFSISDTGIGVPHDKIKTIFETFTQAHSTIARQYGGTGLGLSISQQLAALMGGRIWVESR 284 Query: 798 PAKGTLIEIIFPLYDTSHP 816 +G+ + L + P Sbjct: 285 LGEGSTFHCLVRLGVQTAP 303 >gi|294491224|gb|ADE89980.1| sensor histidine kinase/response regulator TorS [Escherichia coli IHE3034] gi|315287606|gb|EFU47012.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 110-3] Length = 900 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TEIADDVPTALMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ + RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSSK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRIATAP 658 >gi|293433288|ref|ZP_06661716.1| TMAO reductase system sensor TorS [Escherichia coli B088] gi|291324107|gb|EFE63529.1| TMAO reductase system sensor TorS [Escherichia coli B088] Length = 914 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 432 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 487 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 488 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 544 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 545 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 602 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 603 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 658 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 659 RLPLRVATAP 668 >gi|149202987|ref|ZP_01879958.1| sensor histidine kinase/response regulator [Roseovarius sp. TM1035] gi|149143533|gb|EDM31569.1| sensor histidine kinase/response regulator [Roseovarius sp. TM1035] Length = 720 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 107/384 (27%), Positives = 199/384 (51%), Gaps = 45/384 (11%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 +K+EI +L +E DG A + + +++ N A +F +E + KP ++E Sbjct: 72 QKVEIAERRLWHSIETIQDGFAFFDADSRMIAANNAYLAVFD-GLEAV--KPGVSYIE-- 126 Query: 505 TPSVMNHYLTE-----ILSLDLRQTLEKI--TLGSTKEE----KLLS---LRIIIKKLPF 550 + ++TE I +L ++ EK+ ST+ E +L + +++I ++ Sbjct: 127 ----ILQFITEEGIVNIGALKPQEWREKMLDRWQSTQPEPEVIRLWNGQYIKLIDQRGHG 182 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 SL ++ + EK +L A++ AE + KS FLA +SHEIRTP+ ++G +E++ Sbjct: 183 GDVVSLALNITDTIRYEK-ELKEARRRAEAANRAKSSFLANMSHEIRTPMNGVVGMAELL 241 Query: 611 ------KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 + QR + + I SG +L I+ND+LD SKIE+ K+ LH EP L Sbjct: 242 METELTEEQRL----------FTSTIKNSGEALLVIINDVLDYSKIEAEKLILHAEPFDL 291 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG 723 + + E ++L+Q+ A +K + + + +P + + D ++QI N+L NA+ FT +G Sbjct: 292 ERCIHELVTLMQVNARDKGLDVLVDYDLFLPTQFVGDPGRIRQIMTNLLGNAVKFTENGH 351 Query: 724 QIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 ++ T S+ E + + V DTG+G+ +++ F Q+ + + + EGTGLGL Sbjct: 352 VLVRVTGVYSDTEGRASIHVTVEDTGIGIPPDKIDHIFGEFNQVDDERNRKFEGTGLGLA 411 Query: 780 LAKAMVDANMGKFYIFSTPAKGTL 803 +++ ++ GK ++ S P G++ Sbjct: 412 ISQKLIRMMGGKIWVESEPGNGSI 435 >gi|110806192|ref|YP_689712.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella flexneri 5 str. 8401] gi|110615740|gb|ABF04407.1| Sensor protein rcsC [Shigella flexneri 5 str. 8401] Length = 949 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|332702845|ref|ZP_08422933.1| GAF sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552994|gb|EGJ50038.1| GAF sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 562 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/264 (29%), Positives = 140/264 (53%), Gaps = 17/264 (6%) Query: 550 FSSCYSLTMHDI---SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 + S+ M ++ +E ++ +L K +A + KS+FLA +SHEIRTPL AI+G Sbjct: 151 LADATSVAMENVRLYAELQERIAELESQKALAVAATRAKSEFLANMSHEIRTPLNAILGM 210 Query: 607 SEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 +E+ + + P+++ E+ I +SG +LDI+ND+LD+S+IE+G+ +P Sbjct: 211 AELAERR------CPQHVKEHFKLIRQSGRALLDIINDILDLSRIEAGRFAPQRKPFQPR 264 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG- 723 EA+ + + + A EK + + + + +P ++ D ++Q+ N+L NA+ FT G Sbjct: 265 EALDSVLGPMSMIAEEKGLALNLAVSPTVPVWLVGDEGRLRQVLTNLLGNALKFTERGRI 324 Query: 724 --QIIISTTHTSNEEVI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 + + + E + VRDTG+G+ + + F Q S + GTGLGL Sbjct: 325 ELHVAREPSDLQHPEAVRLHFSVRDTGIGIPAERQQAIFQSFSQAEASAHAKYGGTGLGL 384 Query: 779 PLAKAMVDANMGKFYIFSTPAKGT 802 ++K +V+ G+ ++ S P G+ Sbjct: 385 TISKELVERMGGRIWVDSEPGLGS 408 >gi|326539813|gb|ADZ88028.1| histidine kinase [Brucella melitensis M5-90] Length = 821 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 140/254 (55%), Gaps = 4/254 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT D+++ + + L + E K+DF+ VS+E+R+PLT IIGF+E+++ F Sbjct: 561 LTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAF 620 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L N R +EY ++I S +++L IVND+LD++ +++G M L VS+ EA+S A S V Sbjct: 621 GSL-NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRV 679 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + I + A+++ AD V+Q+ N+LSNA+++ P G I++ Sbjct: 680 SERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVAR-DGA 738 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +V+ V D G GM + L+ K F PN + G GLGL + K+ V+ + G+ I Sbjct: 739 DVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRR--RGAGLGLAIVKSFVELHGGRVEID 796 Query: 796 STPAKGTLIEIIFP 809 + +GT + FP Sbjct: 797 TGEERGTTVICRFP 810 >gi|153812172|ref|ZP_01964840.1| hypothetical protein RUMOBE_02569 [Ruminococcus obeum ATCC 29174] gi|149831827|gb|EDM86913.1| hypothetical protein RUMOBE_02569 [Ruminococcus obeum ATCC 29174] Length = 971 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/239 (32%), Positives = 130/239 (54%), Gaps = 6/239 (2%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +KL A K AE S K+ FL +SH+IRTP+ AI+G++++++++ P EY Sbjct: 557 DKLEIALKKAEDASFAKTRFLNNMSHDIRTPMNAILGYAQLMEDE-LKEKDLPEISEYLK 615 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + +SGNL+L I+N++LD+++IESG+M + +++ + A +K I + Sbjct: 616 KLQQSGNLLLSIINNVLDMARIESGRMEIDENYGMIEDIWQTLFEIFDDEAKKKNIALHY 675 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRD 743 + IL D+ VK+I +NILSN + +TPSGG ++I+ V RV D Sbjct: 676 TINVEHEHILTDVTKVKEIFVNILSNTMKYTPSGGSVMINIDELPCSGPGYMIVRTRVSD 735 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TG+GM+ L + F + N+ + + GTGLG+ + K V+ G + S KG+ Sbjct: 736 TGIGMSQEYLTNIFEAFTRERNTTKSKIAGTGLGMSIVKKYVELLGGTIDVESELGKGS 794 >gi|323465649|gb|ADX69336.1| Sensor protein [Lactobacillus helveticus H10] Length = 618 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 99/373 (26%), Positives = 180/373 (48%), Gaps = 41/373 (10%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E +L S+L SDG+ +R G + N ++I+ +P L Sbjct: 261 ERRRLDSVLSHMSDGVLATDRHGNVSVVNHMALSYLNADEDEIINRPIAEVLG------- 313 Query: 510 NHYLTEILSLDLRQTLEKITLG---STKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEW 564 L + S DL + ++I + T++E +L S +I + F S +HD++E Sbjct: 314 ---LKDTSSQDLISSQKEIVVTVDPGTRDEIILHASFSLIKRVTGFVSGSVCVLHDVTE- 369 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGNPRY 623 Q+KN+ S + F++ VSHE+RTPLT++ + E + + P P++ Sbjct: 370 -QQKNENSQRQ------------FVSNVSHELRTPLTSLQAYIEALNEGAWKDPEIAPKF 416 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY----- 678 +E + + ++ ++NDLL +S+++ G + E V+L++ VS ++ + Sbjct: 417 LEVTQ---QETSRMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVSHILNRFDMIVKTDK 473 Query: 679 --ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 ++K+ I+ N + D + Q+ NI++NAI ++P GG I + TH S Sbjct: 474 NKGHKKKYTIKRELGNQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTH-SQGH 532 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 VIL + D G+G+ +L K F ++ ++ GTGLGL +AK +V+A+ G+ + S Sbjct: 533 VILSISDQGLGIPRKDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADS 592 Query: 797 TPAKGTLIEIIFP 809 + KG+ I P Sbjct: 593 SEGKGSTFYISLP 605 >gi|303246174|ref|ZP_07332455.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492570|gb|EFL52441.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 1620 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 87/271 (32%), Positives = 141/271 (52%), Gaps = 31/271 (11%) Query: 553 CYSLTMH----------DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 CY H DI+E K + L+ AK+ AE+ + KSDFLA +SHEIRTP+ A Sbjct: 698 CYDFDYHGERAILGWVIDITERKAAEEALAKAKEQAEEATKAKSDFLANMSHEIRTPMNA 757 Query: 603 IIGFS------EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 I+G S E+ QR +YIE + RS +L I+ND+LD SKIE+GK++ Sbjct: 758 IMGLSHLALQTELTDKQR-------KYIEK---VYRSAENLLGILNDILDFSKIEAGKLD 807 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716 + L++ S+V L A E + + N+P ++ D + QI +N+ +NA+ Sbjct: 808 MEHVAFHLEDVFENMASMVGLKAEEAGLELLFDLPGNMPTLVGDPLRLGQILINLGNNAV 867 Query: 717 HFTPSGGQIIISTT----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 FTP G++++S + ++ V+DTG+G++ + +K + F Q S + Sbjct: 868 KFTPR-GEVVVSARVIEETGTGAKLHFSVKDTGIGLSEEQRKKLFQHFSQADASTTRKYG 926 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 G GLGL + K + + G ++ S P G++ Sbjct: 927 GAGLGLAICKKLTELMGGDIWLESEPGMGSV 957 >gi|307727189|ref|YP_003910402.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] gi|307587714|gb|ADN61111.1| integral membrane sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] Length = 720 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 134/232 (57%), Gaps = 8/232 (3%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A++ AE + K++FLA +SHE+RTPL AI+G++++++ G+ E I RS Sbjct: 252 ARRSAEAANRAKAEFLANMSHELRTPLNAILGYAQILRRDASLSAGHR---ERVGVIQRS 308 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +L ++ D LD ++IE+G++ + V L + ++++ +K + A + Sbjct: 309 GEHLLALIGDALDFARIEAGRLRIEMNDVPLAGTLDAIREIIEVKVAQKHVDFIWRVAPD 368 Query: 694 IP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 +P + AD R ++Q+ LN+L+NA +FT G + + +++ +V VRDTG+GM + Sbjct: 369 VPDAVRADERRLRQVLLNLLANAFNFTDQ-GSVSLLIEMSASGKVCFEVRDTGIGMDADQ 427 Query: 753 LEKAMKPFGQIPNSQQIRG-EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 + +PF QI +++ RG GTGLGL +++ + A + ++ S P +G++ Sbjct: 428 FQTIFEPFEQIVHTE--RGTSGTGLGLTISQQFLRAMGSEIHLQSQPGRGSV 477 >gi|262199396|ref|YP_003270605.1| histidine kinase [Haliangium ochraceum DSM 14365] gi|262082743|gb|ACY18712.1| histidine kinase [Haliangium ochraceum DSM 14365] Length = 519 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 142/249 (57%), Gaps = 7/249 (2%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H +Q+ L+ ++ AE+ S K+ FLA +SHE+RTPL I+G++E++ +G + Sbjct: 129 HQRRTLEQQVAVLAQLREEAERASQSKAMFLANISHEMRTPLGNIMGYAEMLAT--YGEI 186 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 G+ + + +A I +S +L I++++LD+S IE+GK+ + ++ S+ + V L Sbjct: 187 GD-KEMHFAKTILKSSRDLLSIIDNVLDLSAIEAGKLRIERVAFNVRGLASDFQTAVALK 245 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A +K I + A+++P ++AD +KQI N++ NAI FT SG ++ + + Sbjct: 246 AQKKGIRFELNVADSVPANVIADPTKLKQILNNLVGNAIKFTESG--LVHLALDYERDCL 303 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 ++RVRDTG+G+ + +PF Q S R G+GLGL L++ + A G + S+ Sbjct: 304 LVRVRDTGIGIEPAQARLLFRPFSQADISTSRRFGGSGLGLALSRDLARAMGGDLRLHSS 363 Query: 798 -PAKGTLIE 805 P +G++ E Sbjct: 364 VPGEGSVFE 372 >gi|168233586|ref|ZP_02658644.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194472520|ref|ZP_03078504.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458884|gb|EDX47723.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205332352|gb|EDZ19116.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 920 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 128/251 (50%), Gaps = 17/251 (6%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L+ AKK AE+ + KS L +SHE+RTP+ ++G E+++ P IE Sbjct: 382 LNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQT-------TPLNIEQQGLA 434 Query: 631 DRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 D + N +L I+N+LLD S+IESG LH E +L + +A+ +Q A K++ +R Sbjct: 435 DTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLR 494 Query: 688 TSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T ++P D ++QI +N+L NA+ FT +GG I T E++I V D+G Sbjct: 495 TFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG--IRLTVKRHEEQLIFLVSDSGK 552 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ + + F Q + Q GTG+GL +A ++ G + S P GT + + Sbjct: 553 GIEIQQQSQIFTAFYQADTNSQ----GTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSL 608 Query: 807 IFPLYDTSHPH 817 + PL + P Sbjct: 609 VLPLQEYQPPQ 619 >gi|293392823|ref|ZP_06637141.1| sensor histidine kinase/response regulator [Serratia odorifera DSM 4582] gi|291424682|gb|EFE97893.1| sensor histidine kinase/response regulator [Serratia odorifera DSM 4582] Length = 909 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 130/237 (54%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ Q + +Y Sbjct: 277 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT----RQTLKTDLSATQTDYLQT 332 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P +L E + E I L+ A+EK + + Sbjct: 333 IERSANNLLTIINDVLDFSKLEAGKLVLEHIPFALRETLDEVIVLLAPSAHEKGLELTLD 392 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTG 745 N++P +++ D ++Q+ N+L NA+ FT +G ++ + E+ +++ DTG Sbjct: 393 VHNDVPEQVIGDSLRLQQVITNLLGNAVKFTETGNIDIRVELRNRFERQVELEVQIHDTG 452 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++ + + + F Q S R GTGLGL + + +V G S +G+ Sbjct: 453 IGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVKEMGGDICFHSQLNRGS 509 >gi|156053730|ref|XP_001592791.1| hypothetical protein SS1G_05712 [Sclerotinia sclerotiorum 1980] gi|154703493|gb|EDO03232.1| hypothetical protein SS1G_05712 [Sclerotinia sclerotiorum 1980 UF-70] Length = 2208 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/245 (32%), Positives = 131/245 (53%), Gaps = 12/245 (4%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 K + H K+AE+ + KS FLA VSHE+RTPL +IG SE++++ E A Sbjct: 1661 KAEALHNVKLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDSDL----RKDQAEMA 1716 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + I S +L+L ++ND+LD SK+E+ KM L + DE + E + V +KR Sbjct: 1717 DSIRVSADLLLTVINDILDFSKMEADKMKLFIVAFNADEMIREVVRSVSYSNRDKRSSRN 1776 Query: 688 TSFAN--NIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LR 740 N+P+ I D + Q+ N++ N++ FT +G + + T ++ + Sbjct: 1777 VEIIQDINLPQYLIYGDPVRLHQVLGNLIGNSLKFTENGSITVGAKTDWETKDTVKLTFW 1836 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM-GKFYIFSTPA 799 V+DTG+G+ +L K KPF Q NS R G+GLGL + K+++ + M G+ + S Sbjct: 1837 VKDTGIGIPRQQLLKLFKPFSQADNSTARRYGGSGLGLSICKSLIQSMMGGQIELESVEN 1896 Query: 800 KGTLI 804 +GT++ Sbjct: 1897 QGTIV 1901 >gi|119473025|ref|ZP_01614847.1| Signal transduction histidine kinase [Alteromonadales bacterium TW-7] gi|119444603|gb|EAW25915.1| Signal transduction histidine kinase [Alteromonadales bacterium TW-7] Length = 806 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 92/259 (35%), Positives = 133/259 (51%), Gaps = 15/259 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +D++E KL AK AE + KSDFLA +SHEIRTP+ AI+G +++KN P Sbjct: 416 YDVTEKVDAIRKLFDAKLAAENAAQSKSDFLANMSHEIRTPMNAILGGLQLLKNTSL-PE 474 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 ++ A+Y SG +L I+ND+LD SKIES ++ L SL E + + Sbjct: 475 ELRAVLKNASY---SGQSLLTIINDILDYSKIESNQLQLEKASFSLSEVLDSITYDLDSL 531 Query: 679 ANEKRILIRTSFANN-----IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--H 731 +EKRI F N + DL VKQI LN+ SNA+ FT G I +++ + Sbjct: 532 VSEKRI----GFTVNKDESYYEYWVGDLVRVKQILLNLSSNAVKFTDKGSVKINASSKIY 587 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 E + L V D+G+GM+ E + F Q +S + GTGLG+ + ++V G+ Sbjct: 588 EGKEAIYLEVVDSGIGMSKEVTEHIFERFTQADSSTTRKYGGTGLGMSITISLVKMMGGE 647 Query: 792 FYIFSTPAKGTLIEIIFPL 810 I S GT + I PL Sbjct: 648 IDIQSKQGLGTTVTIKLPL 666 >gi|1122856|emb|CAA63920.1| TorS [Escherichia coli K-12] Length = 904 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TAIADDMPCALMGDPRRIRQVITNLLSNALRFTDEG--YIILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|332702425|ref|ZP_08422513.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552574|gb|EGJ49618.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1143 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 134/243 (55%), Gaps = 8/243 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 KQ ++ AK+ AE S KS+FLA +SHEIRTP++ I+G ++V+ R R Sbjct: 614 KQATLEILQAKEQAEAASRAKSEFLANMSHEIRTPISGILGMADVLLTTRL----EDRQA 669 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +Y + S N +L I+ND+LD+SKIE+ K+ L E +LD A+ + L +K + Sbjct: 670 QYIALLKDSANALLIIINDILDLSKIEARKLKLEPELFNLDAALRAVVDPFVLQTVKKGL 729 Query: 685 LIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILR 740 + + P++ D + QI N+LSNA+ FT GG +++ + E+ Sbjct: 730 GLEVHLDPGLPPKLHGDPIRLGQILTNLLSNALKFTSRGGVTLRVVPVQVSGVDCELRFE 789 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+DTG+G+ + + ++ + F Q+ +S + GTGLGL ++K V+ G+ ++ S + Sbjct: 790 VQDTGLGIPSDKQDRLFRSFSQLDSSYAKQYCGTGLGLAISKNFVEMMGGRIWVESIEGQ 849 Query: 801 GTL 803 G+L Sbjct: 850 GSL 852 >gi|163867336|ref|YP_001608530.1| sensor histidine kinase protein [Bartonella tribocorum CIP 105476] gi|161016977|emb|CAK00535.1| sensor histidine kinase protein [Bartonella tribocorum CIP 105476] Length = 821 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 105/397 (26%), Positives = 198/397 (49%), Gaps = 30/397 (7%) Query: 429 PQNGIEP--EDVDTRIN-KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 PQ G+ E++ +I+ +R+ + L+ S+G+ + +G + +N A+SKL+ Sbjct: 433 PQGGVTWLYENLTEKIDLERRYNTLIKIQGETLDKLSEGVVVFGMDGRLRLSNPALSKLW 492 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT---LGSTKEEKLLSLR 542 P + + +E + + + + +L L Q +K T G ++ + S R Sbjct: 493 SLP--------YNLLVEGTHITQLQSHCS---ALTLGQEWDKFTKFITGFAEKRETYSGR 541 Query: 543 IIIKK--------LPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 I +K +P + LT ++++ L + E +++F+ VS Sbjct: 542 IDLKNDMIIDYTLVPLPDGQTMLTFVNVTDTVHVARALQERNEALESADRLRNEFVQHVS 601 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 +E+RTPLT IIGFS+++++Q FG + N R EY +I +L+IVND+LD++ +++G Sbjct: 602 YELRTPLTNIIGFSDILRDQIFGSI-NERQQEYLGHIHSESGTLLNIVNDILDLATLDAG 660 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713 M L +PV++ +A+ +A++ V+ N + I + + ++ I AD + + QI +N+LS Sbjct: 661 IMELDIKPVNIADAMIQAVARVEDRLNGRHITLLQQISPSLNSISADEKRLHQIFVNVLS 720 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 NA++F I ++ ++ V + G + L++ K F +S G Sbjct: 721 NALNFATEASTIEFCVDE-QDDNIVFSVHNEGSDIPEDILDRIFKRFS--SHSHHGGRAG 777 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GLGL L K+ V+ + G I + KGT ++ FPL Sbjct: 778 AGLGLSLVKSFVELHGGYVEILTGSGKGTTVKCFFPL 814 >gi|330012191|ref|ZP_08307324.1| signal transduction histidine-protein kinase BarA [Klebsiella sp. MS 92-3] gi|328533893|gb|EGF60561.1| signal transduction histidine-protein kinase BarA [Klebsiella sp. MS 92-3] Length = 916 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 130/237 (54%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + N ++ Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDL----NATQRDHLTT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L ++ E ++L+ A++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVR--DTG 745 NN+P ++ D ++QI N++ NAI FT G +++ SN V + ++ DTG Sbjct: 394 IKNNVPDNVIGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVEQRAISNSRVQIEIQIHDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGS 510 >gi|265983095|ref|ZP_06095830.1| histidine kinase [Brucella sp. 83/13] gi|264661687|gb|EEZ31948.1| histidine kinase [Brucella sp. 83/13] Length = 843 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 140/254 (55%), Gaps = 4/254 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT D+++ + + L + E K+DF+ VS+E+R+PLT IIGF+E+++ F Sbjct: 583 LTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAF 642 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L N R +EY ++I S +++L IVND+LD++ +++G M L VS+ EA+S A S V Sbjct: 643 GSL-NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRV 701 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + I + A+++ AD V+Q+ N+LSNA+++ P G I++ Sbjct: 702 SERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVAR-DGA 760 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +V+ V D G GM + L+ K F PN + G GLGL + K+ V+ + G+ I Sbjct: 761 DVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRR--RGAGLGLAIVKSFVELHGGRVEID 818 Query: 796 STPAKGTLIEIIFP 809 + +GT + FP Sbjct: 819 TGEERGTTVICRFP 832 >gi|261217919|ref|ZP_05932200.1| histidine kinase [Brucella ceti M13/05/1] gi|261321231|ref|ZP_05960428.1| histidine kinase [Brucella ceti M644/93/1] gi|260923008|gb|EEX89576.1| histidine kinase [Brucella ceti M13/05/1] gi|261293921|gb|EEX97417.1| histidine kinase [Brucella ceti M644/93/1] Length = 843 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 140/254 (55%), Gaps = 4/254 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT D+++ + + L + E K+DF+ VS+E+R+PLT IIGF+E+++ F Sbjct: 583 LTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAF 642 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L N R +EY ++I S +++L IVND+LD++ +++G M L VS+ EA+S A S V Sbjct: 643 GSL-NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRV 701 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + I + A+++ AD V+Q+ N+LSNA+++ P G I++ Sbjct: 702 SERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVAR-DGA 760 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +V+ V D G GM + L+ K F PN + G GLGL + K+ V+ + G+ I Sbjct: 761 DVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRR--RGAGLGLAIVKSFVELHGGRVEID 818 Query: 796 STPAKGTLIEIIFP 809 + +GT + FP Sbjct: 819 TGEERGTTVICRFP 832 >gi|238786791|ref|ZP_04630592.1| Signal transduction histidine-protein kinase barA [Yersinia frederiksenii ATCC 33641] gi|238725159|gb|EEQ16798.1| Signal transduction histidine-protein kinase barA [Yersinia frederiksenii ATCC 33641] Length = 911 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 129/237 (54%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ Q P +Y Sbjct: 268 ELGLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTR----QTLKTSLTPTQTDYLQT 323 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RS N +L I+ND+LD SK+E+ K+ L P L A+ E I L+ A+EK + + Sbjct: 324 IQRSANNLLCIINDVLDFSKLEAEKLVLEHIPFPLRGALDEVIILLAHTAHEKGLELTLH 383 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV--ILRVRDTG 745 ++P +++ D ++QI N+L NAI FT G I+++ + ++V ++ + DTG Sbjct: 384 VNKDVPEQVIGDAMRLQQIITNLLGNAIKFTEQGNIDILVAVQAKTTQQVTIVVEIHDTG 443 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++ + + + F Q S R GTGLGL + + +V G+ S +G+ Sbjct: 444 IGISESQQSQLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGEINFHSQVDRGS 500 >gi|116328008|ref|YP_797728.1| sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116120752|gb|ABJ78795.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 1252 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 144/249 (57%), Gaps = 3/249 (1%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + KN + + E +KS+FLA +SHE+RTPL +++ S+ + + + L + Sbjct: 569 ELELAKNDIEQKTEQLELSGKYKSEFLANMSHELRTPLNSLLILSKDLADNKKKNLDEDQ 628 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +E AN I +SG+ +L ++N++LD+SKIESGKM+++ E V L V + IS +L A +K Sbjct: 629 -VESANIIYKSGHDLLVLINEVLDLSKIESGKMSVNLERVVLRTFVKDLISGFKLQATKK 687 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ + + ++P +I D + + QI N++SNA+ FT G+I + ++++++ V Sbjct: 688 KLDLDLIYYEDLPEKIRTDPQRLDQILKNLISNALKFTER-GRIQLEVKRQNSDKILFSV 746 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G+G+ + + F Q+ S + GTGLGL +++ + G+ ++ S KG Sbjct: 747 IDSGIGIPEEKYSAIFEAFQQVDGSTSRKYGGTGLGLSISRELAGLLGGEIHLKSKVNKG 806 Query: 802 TLIEIIFPL 810 + ++ P+ Sbjct: 807 STFSLLLPI 815 >gi|186683692|ref|YP_001866888.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186466144|gb|ACC81945.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 684 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/271 (28%), Positives = 145/271 (53%), Gaps = 17/271 (6%) Query: 554 YSLTMHDISEWKQEKNKLSH------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 Y T+ DI+E KQ + + A++ AE + K +FLA +SHE+RTPLT+++G+S Sbjct: 257 YVGTLEDITERKQAEEVRAQVIREQTARQEAEAANRMKDEFLAVLSHELRTPLTSMLGWS 316 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 +++++++ R +E I+R+ + ++ D+LD+S+I G++ L+ V+L Sbjct: 317 KILRSKKLDDKATSRALEA---IERNAISQMQLIEDILDVSRIIRGQLRLNVSAVNLISV 373 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 + A+ V+ A K I + T ++ + D ++QI N+L+NAI FTP GG++ + Sbjct: 374 MEAALEAVRPLAEPKEIQLNTVLDTSVGSVYGDPARLQQIVWNLLTNAIKFTPKGGRVEV 433 Query: 728 STTHTSNEE-------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 + + EE ++V DTG+G+++ L K + F Q ++ G GLGL + Sbjct: 434 NLSIVYGEEQQTTQKYAQIQVIDTGIGISSEFLPKVFERFRQADSTTTRSHNGLGLGLAI 493 Query: 781 AKAMVDANMGKFYIFS-TPAKGTLIEIIFPL 810 + +V+ + G + S +G + PL Sbjct: 494 VRHLVELHKGTIFAQSPGSGQGATFTVRLPL 524 >gi|332754864|gb|EGJ85229.1| sensor kinase protein rcsC [Shigella flexneri 4343-70] gi|333001721|gb|EGK21287.1| sensor kinase protein rcsC [Shigella flexneri K-218] Length = 949 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTVMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|126656724|ref|ZP_01727938.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110] gi|126621944|gb|EAZ92652.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110] Length = 1302 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 89/271 (32%), Positives = 145/271 (53%), Gaps = 16/271 (5%) Query: 557 TMHDISEWKQ---EKNKL----SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 T DI KQ E+++L A+++AE+ + K +FLA +SHE+R+PL I+G+S++ Sbjct: 901 TATDIDVQKQLELERDRLLAQEQAAREVAERANRIKDEFLAVLSHELRSPLNPILGWSQL 960 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 ++ ++ L + E + I+R+ L +++DLLD++KI GK++L V+L + + Sbjct: 961 LQVRK---LDEAQTAEALHTIERNAKLQTQLIDDLLDVAKILQGKLSLTMTSVNLAKTIE 1017 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 AI V+ A K I + + NI ++ D ++QI N+LSN I FTPSGGQ+ I Sbjct: 1018 AAIETVKQTAKSKSIALESQLP-NIGQVSGDEARLQQIVWNLLSNGIKFTPSGGQVKIHL 1076 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + IL V+DTG G++ L + F Q S + G GLGL + +V+A+ Sbjct: 1077 KRVGSYAEIL-VKDTGKGISPDFLPHIFESFRQEDASITRKFGGLGLGLAIVSQLVEAHG 1135 Query: 790 GKFYIFSTPAK--GTLIEIIFPLYDT-SHPH 817 G +P + G + PL D S P Sbjct: 1136 GTIRA-ESPGEGLGATFTVQLPLLDAESEPQ 1165 >gi|110677757|ref|YP_680764.1| hybrid sensory histidine kinase, putative [Roseobacter denitrificans OCh 114] gi|109453873|gb|ABG30078.1| hybrid sensory histidine kinase, putative [Roseobacter denitrificans OCh 114] Length = 733 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 88/268 (32%), Positives = 151/268 (56%), Gaps = 12/268 (4%) Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 +R+I ++ P SL ++ + + E+ KL A+ AE S KS FLA +SHEIRTP+ Sbjct: 154 IRMIDRRGPDGDIISLGINITAAVRYEE-KLEAARASAEAASRAKSAFLANMSHEIRTPM 212 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 ++G ++V+ PL + + Y + I SG +L I+ND+LD SKIE+ K+ LH E Sbjct: 213 NGVVGMADVLTET---PLSEEQRL-YVDTIKNSGEALLVIINDVLDYSKIEAEKLQLHPE 268 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719 P +L++++ E + L+Q A +K IL+ +A + + D ++QI N+L NA+ FT Sbjct: 269 PFNLEKSIHEVLRLLQSIARDKGILLSVDYALFLSSDFIGDPGRLRQILTNLLGNAVKFT 328 Query: 720 PSGGQIIISTTHTSNE---EVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 + G + + + +E +VIL RV DTG+G+ ++ F Q+ + + + +GT Sbjct: 329 -TEGSVTVRVSGKPDEATGKVILQIRVEDTGIGIPEDMIDHVFGEFNQVESERNRQFDGT 387 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GLGL + K ++ G+ ++ S G+ Sbjct: 388 GLGLAITKKLIKMMNGQIWLTSEEGVGS 415 >gi|2463029|emb|CAA74020.1| sensory kinase [Pectobacterium carotovorum subsp. carotovorum] Length = 928 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 83/237 (35%), Positives = 128/237 (54%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ Q N +Y Sbjct: 275 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTR----QTLKTSLNTTQTDYLLT 330 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L+I+ND+LD SK+E+GK+ L P SL + + + L+ A+EK + + S Sbjct: 331 IERSANNLLNIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLS 390 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVR--DTG 745 N++P + + D ++QI N+L NAI FT G I + + +V L V+ DTG Sbjct: 391 IQNDVPEQYVGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLEVQICDTG 450 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V G S KG+ Sbjct: 451 IGIAELQQSQLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGS 507 >gi|2353767|gb|AAB94870.1| DMSO/TMAO-sensor kinase [Rhodobacter sphaeroides] Length = 815 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 133/251 (52%), Gaps = 18/251 (7%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +T HD++E ++ A++ AE + K+DFLA +SHEIRTP+ +I G +E++K Sbjct: 293 VTFHDVTEARR-------AREQAEALARAKTDFLATMSHEIRTPIHSIGGVTELLKQSEL 345 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 R Y + I+RS ++ IV+D+LD ++IESG + L S+D+ + + ++ Sbjct: 346 AS----RDRGYVDAIERSTEVLASIVSDVLDYARIESGLVELEQVDFSIDQILDDVARMM 401 Query: 676 QLYANEK---RILI-RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 Q K RI+I RT ++ A LR QI +N+ SNA+ FTP G +I + Sbjct: 402 QPLVRRKPQLRIVIERTDLPAGPGKMQASLR---QILINLTSNAVKFTPEGTVVIGAERL 458 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 V DTG G+ +LE+ KP+ Q +S R GTGLGL + + + G+ Sbjct: 459 AGGHRFRFTVSDTGPGIAAEKLEEIFKPYIQSDSSISRRHGGTGLGLAICRRLAGHLGGR 518 Query: 792 FYIFSTPAKGT 802 + STP G+ Sbjct: 519 LDVRSTPGFGS 529 >gi|312130024|ref|YP_003997364.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM 17132] gi|311906570|gb|ADQ17011.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM 17132] Length = 1076 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 88/261 (33%), Positives = 137/261 (52%), Gaps = 20/261 (7%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI------KN 612 D++E + ++L AK+ AE K FLA +SHEIRTP+ IIG +V+ K+ Sbjct: 542 RDVTELLRSADELKKAKEEAEHLLKVKEQFLANMSHEIRTPMNGIIGMIDVLNETELDKS 601 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 QR EY N I S +L I+ND+LD+SK+E+G+MN+ +P L E + + Sbjct: 602 QR----------EYVNTIRNSSETLLTILNDILDLSKLEAGQMNVEKKPFDLKEMLKNLV 651 Query: 673 SLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 +L + A E L++ + + P I+ D + QI N+ SNAI FT +G II Sbjct: 652 ALFKQKAAETNNLLKFEWDPKVHPYIIGDRIRLLQILSNLTSNAIKFTQNGNVIIRIQWE 711 Query: 732 TSNEEV-ILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 +E+ LR V DTG+G++ +K F Q+ S + GTGLGL ++K +V+ Sbjct: 712 GQDEKTQFLRFEVADTGIGISEENQKKLFTSFQQLDISTKKAFGGTGLGLVISKQLVEIM 771 Query: 789 MGKFYIFSTPAKGTLIEIIFP 809 G+ + S +G++ P Sbjct: 772 GGEIGLTSKLGEGSVFWFTLP 792 >gi|309789938|ref|ZP_07684514.1| PAS/PAC sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308227958|gb|EFO81610.1| PAS/PAC sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 448 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 132/231 (57%), Gaps = 4/231 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ + K FLA +SHE+RTPL AI+GF+ + + GPL + + N I RS +L Sbjct: 221 ERANQAKDMFLANMSHELRTPLNAILGFTGTLLMKLPGPLTADQERQL-NTIQRSARHLL 279 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++ND+LD++KI++G + + EPV+ E ++E ++ A +KR+ + A +I Sbjct: 280 SMINDILDMAKIQAGHLEIQPEPVNCAEVLNEVFDHLRPIAEQKRLEL-ALIAPPTLQIQ 338 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 D R++ QI LN+++NAI FT GG I + +V +RV DTG+G+ +L Sbjct: 339 TDRRALNQIMLNLVNNAIKFTDRGGVRI--EVEPRDTQVAIRVVDTGIGIREADLGLLFV 396 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 FG++ +++ + EGTGLGL +++ + + G+ + S +G+ + P Sbjct: 397 EFGRVNSAEVRQREGTGLGLRISQRLAELLGGRIEVQSCYGEGSTFTLYLP 447 >gi|253989039|ref|YP_003040395.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780489|emb|CAQ83651.1| sensor protein [Photorhabdus asymbiotica] Length = 943 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/257 (33%), Positives = 134/257 (52%), Gaps = 7/257 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS + + L +E+ S KS FLA VSHE+RTPL IIG E+++ P Sbjct: 446 DISARVRMEKSLQEMALASEQASYSKSMFLATVSHELRTPLYGIIGNLELLQAHSL-PAE 504 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + R + N S L+L I++D+LD SKIES ++ + + S E +S IS Sbjct: 505 SARLLSTMN---NSSALLLKIISDILDFSKIESKQLKIEPKEFSCQEVISHVISNYLPLV 561 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +K + + ++P I D ++Q+ N+L+NAI FT +G I + + Sbjct: 562 VKKSLSLYCYIEPDVPNYIRNDPVRLQQVISNLLNNAIKFTDTGCVAI--HVVVDKDYLY 619 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+++ EL + PF QI + + +GTGLGL + + +++ G + S P Sbjct: 620 VRVRDTGVGISDKELIQLFDPFFQIMPNTESSSQGTGLGLAICEKLINLMDGDIEVISQP 679 Query: 799 AKGTLIEIIFPLYDTSH 815 G++ I PLY + Sbjct: 680 QIGSMFSIRLPLYGAKY 696 >gi|189203185|ref|XP_001937928.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187985027|gb|EDU50515.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 918 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/244 (32%), Positives = 129/244 (52%), Gaps = 11/244 (4%) Query: 574 AKKIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A + A KE+S KS FLA +SHEIRTP+ +IG SE++ + N + A I R Sbjct: 446 ANEAAAKEASRMKSQFLANMSHEIRTPIAGVIGMSELLFDMNL----NDEQKDCAENIHR 501 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 S N +L ++ND+LD SK+ESG++++ SL + + ++ A K + ++S + Sbjct: 502 SANSLLTVINDILDFSKVESGRLDVEEVQFSLSVVLRDVNKMMSFAAQRKGLDYQSSIQD 561 Query: 693 NIP---RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGV 746 + R++ D ++QI N+L+N+I FT G ++IS V V DTG+ Sbjct: 562 EVQADLRVMGDPGRLRQILTNVLTNSIKFTSVGTVKLSVMISQESKDMVTVNFSVVDTGI 621 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ ++ +PF Q +S R GTGLGL ++K +V+ G+ ++ S +GT Sbjct: 622 GIEEEVRKRLFQPFSQADSSTARRFGGTGLGLTISKNLVELMKGQIWLDSKLGQGTTATF 681 Query: 807 IFPL 810 P Sbjct: 682 WIPF 685 >gi|163793734|ref|ZP_02187708.1| hypothetical protein BAL199_11916 [alpha proteobacterium BAL199] gi|159180845|gb|EDP65362.1| hypothetical protein BAL199_11916 [alpha proteobacterium BAL199] Length = 1311 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 122/221 (55%), Gaps = 12/221 (5%) Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLD 646 FLA +SHEIRTP+ +IG S + P + +Y I+RS ++L I++D+LD Sbjct: 571 FLANMSHEIRTPMNGVIGLSGLALKSEL-----PEHARDYLEKINRSSLILLRIIDDILD 625 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVK 705 SKIE+G+M++ LD+ + + +L+ +K + + S ++PR L D + Sbjct: 626 FSKIEAGQMSIEATEFDLDDVLQDVATLIADRQEQKPVEVVFSSEPDLPRTLVGDPHRLG 685 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR----VRDTGVGMTNYELEKAMKPFG 761 QI LN++ NA+ FT +G +I++ + T E LR V DTG+GMT+ ++ + K F Sbjct: 686 QILLNLIGNALKFTEAG-EIVVRISATERLEDQLRLQVSVADTGIGMTDEQMARLFKAFS 744 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 Q S R GTGLGL + K +V+ G + STP G+ Sbjct: 745 QADGSTTRRFGGTGLGLAICKQLVELMGGTISVESTPGAGS 785 >gi|91210085|ref|YP_540071.1| hybrid sensory histidine kinase TorS [Escherichia coli UTI89] gi|117623191|ref|YP_852104.1| hybrid sensory histidine kinase TorS [Escherichia coli APEC O1] gi|218557884|ref|YP_002390797.1| hybrid sensory histidine kinase TorS [Escherichia coli S88] gi|237707026|ref|ZP_04537507.1| sensor protein TorS [Escherichia sp. 3_2_53FAA] gi|91071659|gb|ABE06540.1| sensor protein TorS [Escherichia coli UTI89] gi|115512315|gb|ABJ00390.1| sensor protein TorS [Escherichia coli APEC O1] gi|218364653|emb|CAR02339.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli S88] gi|226898236|gb|EEH84495.1| sensor protein TorS [Escherichia sp. 3_2_53FAA] gi|307627594|gb|ADN71898.1| hybrid sensory histidine kinase TorS [Escherichia coli UM146] gi|323953312|gb|EGB49178.1| TMAO reductase sytem sensor TorS [Escherichia coli H252] gi|323958286|gb|EGB53995.1| TMAO reductase sytem sensor TorS [Escherichia coli H263] Length = 910 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 432 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 487 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 488 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 544 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 545 TEIADDVPTALMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRTDGEQWLVEVEDSGC 602 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ + RG GTGLGL ++ + A G+ STP G+ + Sbjct: 603 GIDPAKLAEIFQPFVQVSSK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 658 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 659 RLPLRIATAP 668 >gi|254162230|ref|YP_003045338.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli B str. REL606] gi|300931436|ref|ZP_07146765.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 187-1] gi|242377854|emb|CAQ32621.1| RcsC sensory histidine kinase [Escherichia coli BL21(DE3)] gi|253974131|gb|ACT39802.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli B str. REL606] gi|253978298|gb|ACT43968.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli BL21(DE3)] gi|300460806|gb|EFK24299.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 187-1] Length = 933 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 7/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 426 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 484 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 485 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 541 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + Sbjct: 542 PLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGD 599 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 600 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 659 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ + PLY +P Sbjct: 660 SEPGMGSQFTVRIPLYGAQYPQ 681 >gi|28899341|ref|NP_798946.1| hybrid sensory histidine kinase BarA [Vibrio parahaemolyticus RIMD 2210633] gi|260878968|ref|ZP_05891323.1| signal transduction histidine-protein kinase BarA [Vibrio parahaemolyticus AN-5034] gi|260898315|ref|ZP_05906811.1| signal transduction histidine-protein kinase BarA [Vibrio parahaemolyticus Peru-466] gi|28807577|dbj|BAC60830.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|308085236|gb|EFO34931.1| signal transduction histidine-protein kinase BarA [Vibrio parahaemolyticus Peru-466] gi|308090507|gb|EFO40202.1| signal transduction histidine-protein kinase BarA [Vibrio parahaemolyticus AN-5034] Length = 932 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 87/253 (34%), Positives = 137/253 (54%), Gaps = 12/253 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQ-TDYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L+I+ND+LD SK+E+GK+ L P E++ E I+L A+EK + I Sbjct: 331 TIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITL 390 Query: 689 SFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRD 743 I P ++ D ++QI N++ N+I FT G I +S S E+ VRD Sbjct: 391 KVDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGN-IDVSVEMRSQAGDSVELQFMVRD 449 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 450 TGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGST 509 Query: 804 IEIIFPLYDTSHP 816 L T P Sbjct: 510 FWFTLRLNSTEMP 522 >gi|153839829|ref|ZP_01992496.1| signal transduction histidine-protein kinase BarA [Vibrio parahaemolyticus AQ3810] gi|149746646|gb|EDM57634.1| signal transduction histidine-protein kinase BarA [Vibrio parahaemolyticus AQ3810] Length = 932 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 87/253 (34%), Positives = 137/253 (54%), Gaps = 12/253 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQ-TDYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L+I+ND+LD SK+E+GK+ L P E++ E I+L A+EK + I Sbjct: 331 TIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITL 390 Query: 689 SFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRD 743 I P ++ D ++QI N++ N+I FT G I +S S E+ VRD Sbjct: 391 KVDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGN-IDVSVEMRSQAGDSVELQFMVRD 449 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 450 TGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGST 509 Query: 804 IEIIFPLYDTSHP 816 L T P Sbjct: 510 FWFTLRLNSTEMP 522 >gi|86605618|ref|YP_474381.1| sensor histidine kinase [Synechococcus sp. JA-3-3Ab] gi|86554160|gb|ABC99118.1| sensor histidine kinase [Synechococcus sp. JA-3-3Ab] Length = 573 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 133/258 (51%), Gaps = 10/258 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR-- 622 +Q+ +L A+ AE + KS FLA SHE+RTPL IIGF ++ + + R Sbjct: 294 RQKNKELEQARAQAESANQLKSQFLANTSHELRTPLNGIIGFIRLVLDG----MAESREE 349 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +++ RS +L ++ND+LDI+KIE+GKM L FEP L + + L A +K Sbjct: 350 ELDFLQEAYRSALHLLALINDVLDIAKIEAGKMQLQFEPCDLRALFKDVEAKTGLQAKQK 409 Query: 683 RILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-L 739 + + RI D + + Q+ LN++ NAI FTP G + + + + + Sbjct: 410 GLQLSFHLPPTPDRIWLYGDYQRLLQVMLNLVGNAIKFTPKGSVTVRADLLPGDPGMARI 469 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TP 798 RV DTG+G++ + +K + F Q+ S + GTGLGL +++ +V+A G+ +S Sbjct: 470 RVIDTGIGVSLEKQQKLFQAFTQVDGSTTRQYGGTGLGLAISQRLVEAMGGEINFYSLGE 529 Query: 799 AKGTLIEIIFPLYDTSHP 816 G+ + PLY P Sbjct: 530 GLGSTVTFTVPLYRQPLP 547 >gi|260899636|ref|ZP_05908031.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] gi|308110560|gb|EFO48100.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] Length = 932 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 87/253 (34%), Positives = 137/253 (54%), Gaps = 12/253 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQ-TDYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L+I+ND+LD SK+E+GK+ L P E++ E I+L A+EK + I Sbjct: 331 TIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITL 390 Query: 689 SFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRD 743 I P ++ D ++QI N++ N+I FT G I +S S E+ VRD Sbjct: 391 KVDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGN-IDVSVEMRSQAGDSVELQFMVRD 449 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 450 TGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGST 509 Query: 804 IEIIFPLYDTSHP 816 L T P Sbjct: 510 FWFTLRLNSTEMP 522 >gi|254467028|ref|ZP_05080439.1| response regulator, sensor histidine kinase component GacS [Rhodobacterales bacterium Y4I] gi|206687936|gb|EDZ48418.1| response regulator, sensor histidine kinase component GacS [Rhodobacterales bacterium Y4I] Length = 793 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/253 (31%), Positives = 129/253 (50%), Gaps = 8/253 (3%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + E K+ +L K AE + KS FLA +SHEIRTP+ ++G +EV+ R Sbjct: 247 LQEKKRIAERLQQEKARAEAATETKSRFLATMSHEIRTPINGVLGMAEVLNETRL----T 302 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P + I S +L IVND+LD SK+E+GK + +P +L + + + +L+ A Sbjct: 303 PEQTSCTSTILASSEALLRIVNDILDFSKLEAGKAQMLQQPFNLRDVIYDVATLMSPSAT 362 Query: 681 EKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--NEEV 737 K + I + P + D V+QI +N++ NA+ FT G I I+ + + N + Sbjct: 363 AKGVEICIDIPEHTPPEFIGDSGRVRQILMNLVGNAVKFTLE-GHISITLNYDARHNIPL 421 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + VRDTGVG+ + + F Q+ ++ R EGTGLGL ++ + A G+ + S Sbjct: 422 CIDVRDTGVGIPEDSIGQIFHAFEQVESTTARRFEGTGLGLAISSRLTQAMGGRIDVVSQ 481 Query: 798 PAKGTLIEIIFPL 810 KG+ + L Sbjct: 482 AGKGSCFTVCLTL 494 >gi|206562088|ref|YP_002232851.1| hybrid two-component system kinase-response regulator protein [Burkholderia cenocepacia J2315] gi|198038128|emb|CAR54076.1| hybrid two-component system kinase-response regulator protein [Burkholderia cenocepacia J2315] Length = 1010 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 126/241 (52%), Gaps = 6/241 (2%) Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 + A++ + + KS FLA +SHEIRTPL A++G E++ PR + + Sbjct: 513 ADAQRALDSANRAKSTFLATISHEIRTPLNAMLGNLELLDKAPDPSRQKPRL----HAVT 568 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 + ++LD++N++LD++KIE+ +M L +DE + + L + A + I +R Sbjct: 569 SAARMLLDMLNNVLDMTKIEADRMTLEATGFRIDELMRDVADLFEPVAGARGIALRIDVD 628 Query: 692 NNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILRVRDTGVGMT 749 + L D V+QIA+N++SNAI FT G + +S + V +RV D+G+GMT Sbjct: 629 PAVTHTYLGDPMRVRQIAVNLVSNAIKFTDRGAVALSVSASGGGATPVTIRVSDSGIGMT 688 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L +PF Q S R GTG+GL L+ + ++ G+ S P G+ + P Sbjct: 689 ADQLAHVFEPFAQADESIARRFGGTGIGLALSYKLAESMGGRIEADSVPGVGSTFVVTLP 748 Query: 810 L 810 L Sbjct: 749 L 749 >gi|113968921|ref|YP_732714.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] gi|113883605|gb|ABI37657.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] Length = 1236 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 87/250 (34%), Positives = 131/250 (52%), Gaps = 8/250 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ K + L AK+ AE + +KS+FLA +SHEIRTP+ AIIG ++ + Sbjct: 694 THKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLT 753 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 Y+E A + S +L I+ND+LD SKIE+GK+ L P LD+ + A+ L Sbjct: 754 A-QQKDYLEKAGF---SAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNA 809 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 L A E+ + + IL D + Q+ +N+LSNA+ FT SG ++ + Sbjct: 810 LKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGEIELGCEDVGERD 869 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + L+ VRDTG+G++ + EK F Q S + GTGLGL ++K +V GK Sbjct: 870 HRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKM 929 Query: 793 YIFSTPAKGT 802 + S G+ Sbjct: 930 QVQSELGVGS 939 >gi|323694471|ref|ZP_08108641.1| sensor protein [Clostridium symbiosum WAL-14673] gi|323501459|gb|EGB17351.1| sensor protein [Clostridium symbiosum WAL-14673] Length = 854 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 136/249 (54%), Gaps = 18/249 (7%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + + N+L A++ A + + KS+FLA +SH+IRTP+ AI+G + + + + + + Sbjct: 327 RSQMNELEKARQAALEANKAKSEFLANMSHDIRTPMNAIVGMTAIATAH----IDDRKQV 382 Query: 625 EYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 E I S +L ++ND+LD+SKIESGK+ L E +SL E V ++++Q K+ Sbjct: 383 ENCLRKITLSSKHLLGLINDVLDMSKIESGKLTLTTEQISLKEVVEGIVNIMQPQVKTKK 442 Query: 684 ----ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 I + F N + D + Q+ LN+LSNA +TP GG I +S + + + Sbjct: 443 QTFDIHVENIFTEN---VWCDGIRLNQVLLNLLSNATKYTPEGGSIQLSLSEEKSPKGEN 499 Query: 737 ---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + + VRD G+GM+ L++ + + + ++ + EG GLG+ + K +VDA G Sbjct: 500 YVRIHINVRDNGIGMSPEFLKRIYESYSRADGTRIHKTEGAGLGMAITKYIVDAMEGTIE 559 Query: 794 IFSTPAKGT 802 I S P KG+ Sbjct: 560 IQSEPDKGS 568 >gi|239908806|ref|YP_002955548.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798673|dbj|BAH77662.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1375 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/268 (32%), Positives = 137/268 (51%), Gaps = 12/268 (4%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI E K+ + +L++A+ AE S KS+FLA +SHEIRTPL ++G +++++ Sbjct: 971 TFQDIDERKKVELELNNARLKAEAASKAKSEFLANMSHEIRTPLNGVLGMLQLLESTS-- 1028 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + EY +S + ++ D+LD+SKIE+GKM L S + + L + Sbjct: 1029 --KDAEQDEYIEAAKKSSTRLTRLLADILDLSKIEAGKMILEEADFSFVDLKESTLGLFE 1086 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TS 733 L EK + + +P R++ D ++QI N++ NAI FT + G + + H S Sbjct: 1087 LAVKEKGLKLDFVIDELLPARLVGDQIRLQQILFNLVGNAIKFTET-GDVRVEACHLPCS 1145 Query: 734 NEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 N++ V+ V DTG+G+ + + +PF Q S R +G GLGL + + +V G Sbjct: 1146 NDDIQRVLFIVSDTGIGIAQGMIAQVFEPFTQAEGSYTRRFQGAGLGLSIVRKLVTQMGG 1205 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 I ST GT + PL S P D Sbjct: 1206 SLAIDSTEGTGTTFYLSLPL-KHSAPSD 1232 >gi|209526710|ref|ZP_03275233.1| multi-sensor signal transduction histidine kinase [Arthrospira maxima CS-328] gi|209492842|gb|EDZ93174.1| multi-sensor signal transduction histidine kinase [Arthrospira maxima CS-328] Length = 856 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 107/384 (27%), Positives = 179/384 (46%), Gaps = 37/384 (9%) Query: 457 ILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 + +A+ GI+I EG + N + + G+ E ++ + F LE +N L Sbjct: 473 VFKASPIGISITTVEEGRFVDVNDSFLQQLGWSREQVIDRTFED-LEMWDAEQINPILQR 531 Query: 516 ILSLDLRQTLEKITL-----GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 I + D L +T+ + L+++ I +L + C + DI+E KQ + + Sbjct: 532 ITNGD---RLSNLTVQVRHKSGAIRDWLIAIEPI--QLENTPCLLILASDITEHKQAE-E 585 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK+ AE+ + KS FLA +SHE+RTPL AI+G+SE+++ LG ++ I Sbjct: 586 LRRAKEAAEQANQAKSLFLANMSHELRTPLNAILGYSELLQEDA-EDLGQDDWVADLKNI 644 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 +G +L +++D+LD SKIE+G+MN H E ++ + E + + A++ Sbjct: 645 HVAGQHLLTLISDILDFSKIEAGRMNFHLEKCQINTLLWEVETTIAPLADKNHNQFTLEV 704 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSG-------GQIIISTT-------HTSNEE 736 A + + DL V+Q LN+LSNA FT G Q+I +T H+ Sbjct: 705 APGLDLMYTDLTKVRQSLLNLLSNACKFTEQGQVTLRVWKQLIPATDLPDLPVYHSLESP 764 Query: 737 ---------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + +V+D G+GM ++ PF Q S + GTGLGL + + Sbjct: 765 EEELSEIPFIFFQVQDHGIGMNERQIATVFSPFTQADESTTRKYGGTGLGLSITHKLCQM 824 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLY 811 G ++ S KG+ + P Y Sbjct: 825 MGGDLWVESELNKGSTFTMRLPQY 848 >gi|152971650|ref|YP_001336759.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896247|ref|YP_002920983.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae NTUH-K2044] gi|150956499|gb|ABR78529.1| hybrid sensory histidine kinase in two-component regulatory system with UvrY [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548565|dbj|BAH64916.1| hybrid sensory histidine kinase in two-component regulatory system with UvrY [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 916 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 130/237 (54%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + N ++ Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDL----NATQRDHLTT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L ++ E ++L+ A++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVR--DTG 745 NN+P ++ D ++QI N++ NAI FT G +++ SN V + ++ DTG Sbjct: 394 IKNNVPDNVIGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVEQRAISNSRVQIEIQIHDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGS 510 >gi|261822787|ref|YP_003260893.1| hybrid sensory histidine kinase BarA [Pectobacterium wasabiae WPP163] gi|261606800|gb|ACX89286.1| multi-sensor hybrid histidine kinase [Pectobacterium wasabiae WPP163] Length = 928 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 83/237 (35%), Positives = 128/237 (54%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ Q N +Y Sbjct: 275 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTR----QTLKTSLNTTQTDYLLT 330 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L+I+ND+LD SK+E+GK+ L P SL + + + L+ A+EK + + S Sbjct: 331 IERSANNLLNIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLS 390 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVR--DTG 745 N++P + + D ++QI N+L NAI FT G I + + +V L V+ DTG Sbjct: 391 IQNDVPEQYVGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLEVQICDTG 450 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V G S KG+ Sbjct: 451 IGIAELQQSQLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGS 507 >gi|94267625|ref|ZP_01290943.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93451924|gb|EAT02648.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 483 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 95/374 (25%), Positives = 172/374 (45%), Gaps = 24/374 (6%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-------QNT 505 +L SIL++ G+ +++G + N +L G+ + D L +P L Q Sbjct: 77 RLSSILQSIGAGVIATDQQGRLAFLNPVAERLTGWDLVDALNRPVGEVLALTDEESGQPL 136 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISE 563 PS + L + +D R E++ L + E + FS D Sbjct: 137 PSPLKQVLEDGEIIDWR---ERLMLTPRRGEPCPVACTVAPIASFSGIIGAVFVFRDTRR 193 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 ++ ++ L AK+ AE K +FLA +SHEIRTPLTA++G ++++ R + Sbjct: 194 EREIQSHLLAAKEQAEGALRAKGEFLAGMSHEIRTPLTAVLGMADLLDKTRL----DSHQ 249 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 +Y +G +LD++N +LD+SKIE+G++ + LD+ V + ++ L A ++ Sbjct: 250 RQYVAASRAAGENLLDLINGILDLSKIEAGRLEVESVEFDLDQLVRQTCEIMNLRARQQG 309 Query: 684 I-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------ 736 + + S ++ D ++Q+ +N++ NAI FT G++++ Sbjct: 310 LEFVHHSSCAGPCLVMGDPTRIRQVLVNLIGNAIKFTEE-GRVMVELACLPAAPPYPGPF 368 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V DTG+G+ + E + F Q +S R GTGLGL +++ +V G+ + S Sbjct: 369 FRCTVSDTGIGIPAAKQEMIFEDFAQADSSMTRRYGGTGLGLAISRKLVTMMGGQISLVS 428 Query: 797 TPAKGTLIEIIFPL 810 G+ + PL Sbjct: 429 REGGGSTFTMEIPL 442 >gi|121997909|ref|YP_001002696.1| GAF sensor signal transduction histidine kinase [Halorhodospira halophila SL1] gi|121589314|gb|ABM61894.1| GAF sensor signal transduction histidine kinase [Halorhodospira halophila SL1] Length = 437 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 133/242 (54%), Gaps = 5/242 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A++ AE+ + KS FL+ +SHE+RTPL A++GF+++++ PL + R Y + Sbjct: 187 ELQQAREEAERGNRAKSQFLSSMSHELRTPLNAVLGFAQILEQDPREPL-SERQAGYVDQ 245 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I G +L +++D+LD+S++E+G++ L E V+ V + L+ A + + + Sbjct: 246 ILGGGRHLLSLIDDILDLSRVEAGRVELKPEWVAPGLLVDQCAELLGPMATDAGVHLSVY 305 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 A +P I D R ++Q+ N+ SNA+ + G++ + + + + RVRDTG+G+ Sbjct: 306 VAEAVPASIWVDPRRIRQVLFNLASNAVKYNRPDGRVEVEVEAPAPDRIRFRVRDTGIGI 365 Query: 749 TNYELEKAMKPFGQIP-NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + PF ++ S ++ EGTG+GL + + +V+ G+ S P G++ + Sbjct: 366 REERQREVFYPFNRLGLESSEV--EGTGIGLVVTRRLVEQMGGEIGFSSAPGVGSVFWVD 423 Query: 808 FP 809 P Sbjct: 424 LP 425 >gi|86148693|ref|ZP_01066971.1| sensory box histidine kinase/response regulator [Vibrio sp. MED222] gi|85833512|gb|EAQ51692.1| sensory box histidine kinase/response regulator [Vibrio sp. MED222] Length = 1462 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 97/342 (28%), Positives = 169/342 (49%), Gaps = 22/342 (6%) Query: 480 AVSKLFGYPVEDILRKP---FTVFLEQNTPSVMNHYLTEI----LSLDLRQTLEKITLGS 532 VS +FG V+++ P F + E + P L I + R LE G Sbjct: 617 GVSDMFGLSVDNVKEHPQHLFNLISEDDLPQFETSMLEAIETGHWENEQRMQLES---GQ 673 Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 TK K S K + +++ + DI+ K+++ L +A++ AE+ ++ KS FLA + Sbjct: 674 TKWVKFNSQVSNSKTIEWNTVIT----DITLLKKQQQALDNARQKAERATAAKSQFLATI 729 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHE+RTP++ I+G E+++ + + + +++S +L IVND+LD SKIE+ Sbjct: 730 SHEVRTPISGILGLLELMQEHQL----SEELLNLHGGLNQSARNLLHIVNDVLDYSKIEA 785 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNI 711 GK++L+ + L + ++ + ++A +K + N+ + L AD + QI N Sbjct: 786 GKLDLNPTEIELGKVLARIVQPQSIHAQQKGLAFHYWQDPNLAQWLFADDIRLHQILNNF 845 Query: 712 LSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 L+NAI FT G I + + ++V L V DTG+G+ + +PF Q+ + Sbjct: 846 LNNAIKFTEHGTISLHIDVIEQNEHQQKVSLTVSDTGIGIPKDRQQSLFQPFEQVDKTTS 905 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 R GTGLGL +A +++ G + S KG+ + L Sbjct: 906 RRFGGTGLGLSIALKLIEQMDGNIELSSEEGKGSHFTVTVTL 947 >gi|323485480|ref|ZP_08090826.1| sensor protein [Clostridium symbiosum WAL-14163] gi|323401128|gb|EGA93480.1| sensor protein [Clostridium symbiosum WAL-14163] Length = 854 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 136/249 (54%), Gaps = 18/249 (7%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + + N+L A++ A + + KS+FLA +SH+IRTP+ AI+G + + + + + + Sbjct: 327 RSQMNELEKARQAALEANKAKSEFLANMSHDIRTPMNAIVGMTAIATAH----IDDRKQV 382 Query: 625 EYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 E I S +L ++ND+LD+SKIESGK+ L E +SL E V ++++Q K+ Sbjct: 383 ENCLRKITLSSKHLLGLINDVLDMSKIESGKLTLTTEQISLKEVVEGIVNIMQPQVKTKK 442 Query: 684 ----ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 I + F N + D + Q+ LN+LSNA +TP GG I +S + + + Sbjct: 443 QTFDIHVENIFTEN---VWCDGIRLNQVLLNLLSNATKYTPEGGSIQLSLSEEKSPKGEN 499 Query: 737 ---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + + VRD G+GM+ L++ + + + ++ + EG GLG+ + K +VDA G Sbjct: 500 YVRIHINVRDNGIGMSPEFLKRIYESYSRADGTRIHKTEGAGLGMAITKYIVDAMEGTIE 559 Query: 794 IFSTPAKGT 802 I S P KG+ Sbjct: 560 IQSEPDKGS 568 >gi|315126944|ref|YP_004068947.1| two-component member protein [Pseudoalteromonas sp. SM9913] gi|315015458|gb|ADT68796.1| putative two-component member protein [Pseudoalteromonas sp. SM9913] Length = 1103 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/216 (33%), Positives = 120/216 (55%), Gaps = 6/216 (2%) Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 F+A +SHEIRTP+ AIIGFS+++ + PL + + ++ + +L ++ND+LD Sbjct: 543 FMANMSHEIRTPMNAIIGFSDILMD---SPLNKEQQKQIIT-VNNAARSLLHLLNDILDS 598 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQ 706 +K+E GK+ + +L E + +S L A K + + A+N+ P D ++Q Sbjct: 599 AKLEKGKLEIQKVHFNLQELLDNIVSTFWLDAKRKDLQLILKIADNVNPFYFGDDTRLRQ 658 Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 + N++ NAI FT G + +S TH N+ ++ V+D+G+G+ LE KPF Q + Sbjct: 659 VLTNLIGNAIKFTEQG-HVTVSVTHKPNQPILFEVQDSGIGIEKGRLEAIFKPFEQADGT 717 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 R GTGLG ++K +V+ GK Y ST +G+ Sbjct: 718 TTRRFGGTGLGTTISKQLVELMGGKIYAQSTLGQGS 753 >gi|288960032|ref|YP_003450372.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288912340|dbj|BAI73828.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 751 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 83/244 (34%), Positives = 129/244 (52%), Gaps = 13/244 (5%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + + A+ AE S KS FLA +SHE+RTP+TA+IG +++ G N + I Sbjct: 219 REEAEDARVAAENASRAKSRFLAMMSHELRTPMTAVIGMGDLL----LGTGLNEQQIALV 274 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + S + ++ I+ND+LD SKIE+G++ L SL V + + L + A K + + Sbjct: 275 KTLRSSADTLMTILNDVLDFSKIEAGQLTLEEIDFSLPRLVEDVVQLFLVRAAAKGLSLS 334 Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIII-----STTHTSNEEVILR 740 S A N PR I D ++Q+ N++SNAI FT G +I + + S + LR Sbjct: 335 ASIAENTPRHIRGDPTRLRQVLYNLVSNAIKFTDRGAIEIAVWSPDPPASPLSASPMTLR 394 Query: 741 --VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V+D G+GMT + + F Q S + GTGLGL + K +V+A G+ + STP Sbjct: 395 FEVQDDGIGMTADQRARLFDAFVQADASTSRKYGGTGLGLSICKRLVEAMGGEISVASTP 454 Query: 799 AKGT 802 +G+ Sbjct: 455 GRGS 458 >gi|262041527|ref|ZP_06014724.1| sensor protein GacS [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041088|gb|EEW42162.1| sensor protein GacS [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 916 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 130/237 (54%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + N ++ Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDL----NATQRDHLTT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L ++ E ++L+ A++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVR--DTG 745 NN+P ++ D ++QI N++ NAI FT G +++ SN V + ++ DTG Sbjct: 394 IKNNVPDNVIGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVEQRAISNSRVQIEIQIHDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGS 510 >gi|256060062|ref|ZP_05450244.1| histidine kinase [Brucella neotomae 5K33] Length = 859 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 140/254 (55%), Gaps = 4/254 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT D+++ + + L + E K+DF+ VS+E+R+PLT IIGF+E+++ F Sbjct: 599 LTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAF 658 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L N R +EY ++I S +++L IVND+LD++ +++G M L VS+ EA+S A S V Sbjct: 659 GSL-NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRV 717 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + I + A+++ AD V+Q+ N+LSNA+++ P G I++ Sbjct: 718 SERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVAR-DGA 776 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +V+ V D G GM + L+ K F PN + G GLGL + K+ V+ + G+ I Sbjct: 777 DVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRR--RGAGLGLAIVKSFVELHGGRVEID 834 Query: 796 STPAKGTLIEIIFP 809 + +GT + FP Sbjct: 835 TGEERGTTVICRFP 848 >gi|253698713|ref|YP_003019902.1| histidine kinase [Geobacter sp. M21] gi|251773563|gb|ACT16144.1| histidine kinase [Geobacter sp. M21] Length = 588 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 125/238 (52%), Gaps = 8/238 (3%) Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 S FLA +SHEIRTP+ ++G +E++ + + + YA + SG +LDI+ND+L Sbjct: 198 SQFLANMSHEIRTPMNGVLGMAELLLHSEL----DEKQKSYAKMLHHSGESLLDIINDIL 253 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRSV 704 +ISKIE+GK+ + P L E A+ L + K + + ++PR +A D + Sbjct: 254 NISKIEAGKLEIERIPFDLHETARGAVELYREVGRGKGVAVELQIEEDVPRCVAGDPNRL 313 Query: 705 KQIALNILSNAIHFTPSGG-QIIISTT--HTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 +Q+ +N+++N + FT G Q+ +S + + + V V+DTG+G+ + F Sbjct: 314 RQVLINVVNNGLKFTEKGSVQVRVSLVEQNQNGQYVGFEVKDTGIGIPADSIGAIFDLFA 373 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 Q+ S + GTGLGL +AK +V+ G+ + S P +G+ I L+ C Sbjct: 374 QVDGSTTRKYGGTGLGLAIAKQLVELMGGEIGVESEPGQGSTFTFIVFLHQQVDQALC 431 >gi|168703443|ref|ZP_02735720.1| sensory box histidine kinase/response regulator [Gemmata obscuriglobus UQM 2246] Length = 1018 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 102/375 (27%), Positives = 180/375 (48%), Gaps = 15/375 (4%) Query: 438 VDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 V+ RI +R E+ + + S ++ + G+AI+ EG + NR + GY E +L+ Sbjct: 213 VEERIRERTAELWQQEERFRSAFDSAAIGMAILTPEGRFVRVNRVLCDTVGYTDEQLLQC 272 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQ-TLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554 F + + ++S ++ EK + + + + + + + Sbjct: 273 AFEAVTHPDDRPADAAFTARMISGEIASYQREKRYVHKAGSVVWVQVNVSLVRDAAGRPH 332 Query: 555 SLTMH--DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 + DI+ K+ + L A AE S KS+FLA +SHEIRTP+ I+G +E++ Sbjct: 333 HVVSQILDITARKEWEEVLRRATAAAEAASRAKSEFLANMSHEIRTPMNGIVGMTELLLE 392 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 R P E + S + +L ++ND+LD SKIE+GK++L P SL + V + + Sbjct: 393 TRL----TPEQRESVGLVKSSADALLTVINDILDFSKIEAGKLDLDPLPFSLRDMVGDTL 448 Query: 673 SLVQLYANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + A+ K + L + +L D ++Q+ N++ NAI FT G++++ Sbjct: 449 KALAGRAHAKGLELACELLPDLPDVLLGDAHRLRQVLTNLVGNAIKFTDR-GEVLVRCER 507 Query: 732 T--SNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 S + V+LR V DTG+G+ +L+ +PF Q S + GTGLGL + + +V Sbjct: 508 VPESGDAVVLRFSVTDTGIGIPGEKLKAVFEPFTQADGSTTRKYGGTGLGLTICQRLVGL 567 Query: 788 NMGKFYIFSTPAKGT 802 G+ + S KG+ Sbjct: 568 MGGRLWAESESGKGS 582 >gi|194432448|ref|ZP_03064735.1| TMAO reductase system sensor TorS [Shigella dysenteriae 1012] gi|194419335|gb|EDX35417.1| TMAO reductase system sensor TorS [Shigella dysenteriae 1012] gi|332095919|gb|EGJ00926.1| TMAO reductase sytem sensor TorS [Shigella dysenteriae 155-74] Length = 904 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 88/253 (34%), Positives = 135/253 (53%), Gaps = 25/253 (9%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKR---I 684 SG +L I+ND+LD S IE+G N+ FEP L E S +QL + + I Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLE------STLQLMSGRVKGHPI 531 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D Sbjct: 532 RLATAIADDVPSALMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRTDGEQWLVEVED 589 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ Sbjct: 590 SGCGIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSC 645 Query: 804 IEIIFPLYDTSHP 816 + PL + P Sbjct: 646 FCLRLPLRVATGP 658 >gi|148976729|ref|ZP_01813401.1| sensor protein TorS [Vibrionales bacterium SWAT-3] gi|145963842|gb|EDK29101.1| sensor protein TorS [Vibrionales bacterium SWAT-3] Length = 1004 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 126/241 (52%), Gaps = 7/241 (2%) Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 + A+ AE+ S KS FLA +SHEIRTP+ ++G + ++K+ PL + YA+ I+ Sbjct: 457 AKARSAAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLKDTGLNPLQSG----YADIIN 512 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 RSG +L I+ND+LD SKIE+G + + L + V + L++ A EK++ Sbjct: 513 RSGKNLLAILNDVLDYSKIEAGHLEIRIASFDLHQMVQDTYQLMEGRAAEKKLGFSYHIE 572 Query: 692 NNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMT 749 +++ R D+ + QI N++ NAI FT G I IS V+ V DTGVG+ Sbjct: 573 SDVQRYWRGDVTRISQILNNLVGNAIKFTDKGDVDIFISLDLEDENRVMFEVSDTGVGIH 632 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 E + F Q + + G GTGLGL ++K ++ A G + S +G+ P Sbjct: 633 ESEQKCLFDAFSQTNSGRNTTG-GTGLGLAISKRIMLAMDGDIGVHSEEGEGSQFWFSLP 691 Query: 810 L 810 L Sbjct: 692 L 692 >gi|300948912|ref|ZP_07162974.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 116-1] gi|300958903|ref|ZP_07171007.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 175-1] gi|300314466|gb|EFJ64250.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 175-1] gi|300451608|gb|EFK15228.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 116-1] gi|309702529|emb|CBJ01856.1| two-component system sensor kinase [Escherichia coli ETEC H10407] Length = 933 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 7/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 426 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 484 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 485 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 541 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + Sbjct: 542 PLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGD 599 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 600 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 659 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ + PLY +P Sbjct: 660 SEPGMGSQFTVRIPLYGAQYPQ 681 >gi|114048941|ref|YP_739491.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] gi|113890383|gb|ABI44434.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] Length = 1236 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 87/250 (34%), Positives = 131/250 (52%), Gaps = 8/250 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ K + L AK+ AE + +KS+FLA +SHEIRTP+ AIIG ++ + Sbjct: 694 THKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLT 753 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 Y+E A + S +L I+ND+LD SKIE+GK+ L P LD+ + A+ L Sbjct: 754 A-QQKDYLEKAGF---SAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNA 809 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 L A E+ + + IL D + Q+ +N+LSNA+ FT SG ++ + Sbjct: 810 LKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGEIELGCEDVGERD 869 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + L+ VRDTG+G++ + EK F Q S + GTGLGL ++K +V GK Sbjct: 870 HRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKM 929 Query: 793 YIFSTPAKGT 802 + S G+ Sbjct: 930 QVQSELGVGS 939 >gi|306842790|ref|ZP_07475431.1| histidine kinase [Brucella sp. BO2] gi|306287063|gb|EFM58571.1| histidine kinase [Brucella sp. BO2] Length = 850 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 140/254 (55%), Gaps = 4/254 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT D+++ + + L + E K+DF+ VS+E+R+PLT IIGF+E+++ F Sbjct: 590 LTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAF 649 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L N R +EY ++I S +++L IVND+LD++ +++G M L VS+ EA+S A S V Sbjct: 650 GSL-NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRV 708 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + I + A+++ AD V+Q+ N+LSNA+++ P G I++ Sbjct: 709 SERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVAR-DGA 767 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +V+ V D G GM + L+ K F PN + G GLGL + K+ V+ + G+ I Sbjct: 768 DVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRR--RGAGLGLAIVKSFVELHGGRVEID 825 Query: 796 STPAKGTLIEIIFP 809 + +GT + FP Sbjct: 826 TGEERGTTVICRFP 839 >gi|261221148|ref|ZP_05935429.1| histidine kinase [Brucella ceti B1/94] gi|261314866|ref|ZP_05954063.1| histidine kinase [Brucella pinnipedialis M163/99/10] gi|261316576|ref|ZP_05955773.1| histidine kinase [Brucella pinnipedialis B2/94] gi|261751241|ref|ZP_05994950.1| histidine kinase [Brucella suis bv. 5 str. 513] gi|261755806|ref|ZP_05999515.1| histidine kinase [Brucella suis bv. 3 str. 686] gi|265987648|ref|ZP_06100205.1| histidine kinase [Brucella pinnipedialis M292/94/1] gi|265992123|ref|ZP_06104680.1| histidine kinase [Brucella melitensis bv. 1 str. Rev.1] gi|265993860|ref|ZP_06106417.1| histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|265997108|ref|ZP_06109665.1| histidine kinase [Brucella ceti M490/95/1] gi|260919732|gb|EEX86385.1| histidine kinase [Brucella ceti B1/94] gi|261295799|gb|EEX99295.1| histidine kinase [Brucella pinnipedialis B2/94] gi|261303892|gb|EEY07389.1| histidine kinase [Brucella pinnipedialis M163/99/10] gi|261740994|gb|EEY28920.1| histidine kinase [Brucella suis bv. 5 str. 513] gi|261745559|gb|EEY33485.1| histidine kinase [Brucella suis bv. 3 str. 686] gi|262551576|gb|EEZ07566.1| histidine kinase [Brucella ceti M490/95/1] gi|262764841|gb|EEZ10762.1| histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|263003189|gb|EEZ15482.1| histidine kinase [Brucella melitensis bv. 1 str. Rev.1] gi|264659845|gb|EEZ30106.1| histidine kinase [Brucella pinnipedialis M292/94/1] gi|326410096|gb|ADZ67161.1| histidine kinase [Brucella melitensis M28] Length = 843 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 140/254 (55%), Gaps = 4/254 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT D+++ + + L + E K+DF+ VS+E+R+PLT IIGF+E+++ F Sbjct: 583 LTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAF 642 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L N R +EY ++I S +++L IVND+LD++ +++G M L VS+ EA+S A S V Sbjct: 643 GSL-NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRV 701 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + I + A+++ AD V+Q+ N+LSNA+++ P G I++ Sbjct: 702 SERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVAR-DGA 760 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +V+ V D G GM + L+ K F PN + G GLGL + K+ V+ + G+ I Sbjct: 761 DVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRR--RGAGLGLAIVKSFVELHGGRVEID 818 Query: 796 STPAKGTLIEIIFP 809 + +GT + FP Sbjct: 819 TGEERGTTVICRFP 832 >gi|239993827|ref|ZP_04714351.1| sensor protein BarA [Alteromonas macleodii ATCC 27126] Length = 983 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/246 (32%), Positives = 138/246 (56%), Gaps = 9/246 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +++ +L A+K A K S+ KS FLA +SHEIRTPL AI+GFS+ + N P Sbjct: 352 EEQNARLDIARKDAIKASNVKSQFLANMSHEIRTPLNAILGFSKELNNASL-PTDQQ--- 407 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E ++ + + +L IVND+LD SKIE+GK+ ++ +P S ++ + E ++++ ++ KRI Sbjct: 408 EQVRIVNTAADNLLTIVNDILDFSKIEAGKLQINNQPFSPNKLLEEMVTIMAKSSHSKRI 467 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILR 740 +++ D+ +KQ+ N+LSNA+ FT S G I S + S EV + Sbjct: 468 EFVFDLHPLPEKLIGDVFRIKQVLNNLLSNALKFT-SSGTITFSVSGRSLPHGIHEVNIT 526 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+G++ + +K F Q+ ++ +GTGLGL +++ +V G + S + Sbjct: 527 VEDTGIGISRQDRKKLFNAFSQVDDALNRNYQGTGLGLVISRELVRLMNGDLTLKSVLGQ 586 Query: 801 GTLIEI 806 G+ + Sbjct: 587 GSTFNV 592 >gi|223983037|ref|ZP_03633241.1| hypothetical protein HOLDEFILI_00520 [Holdemania filiformis DSM 12042] gi|223964987|gb|EEF69295.1| hypothetical protein HOLDEFILI_00520 [Holdemania filiformis DSM 12042] Length = 748 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 125/230 (54%), Gaps = 12/230 (5%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP-RYIEYANYIDRSGNLVLDIVND 643 K+DFL+R+SHEIRTP+ AI+G S + L +P R E I S +L ++ND Sbjct: 355 KTDFLSRMSHEIRTPMNAILGMSAIAAQ----SLNDPDRVGECIEKIQLSSRFLLGLIND 410 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLR 702 +LD+S+IESGK+ L+ P+ + +L A K + R ++ D Sbjct: 411 ILDMSRIESGKLLLNNGPLVTRRLIEGVSTLCAGQAAAKGVRYRCVVDPSLQTEYTGDSM 470 Query: 703 SVKQIALNILSNAIHFTPSGGQIII--STTHTSNEEVILR--VRDTGVGMTNYELEKAMK 758 ++Q+ +NILSNA+ FT SGG++++ S E ++R +RDTGVG++ L + Sbjct: 471 KLQQVLVNILSNAVKFTDSGGEVVLHASQVQAKKENAVVRFVIRDTGVGISPEFLPHLFE 530 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT--LIEI 806 PF Q G+GLGL ++K++VD G+ + S KGT +IE+ Sbjct: 531 PFSQESTGTTAAYGGSGLGLAISKSVVDLMDGRISVRSEKGKGTEFIIEV 580 >gi|242280564|ref|YP_002992693.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123458|gb|ACS81154.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 1006 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 98/376 (26%), Positives = 185/376 (49%), Gaps = 44/376 (11%) Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS--LD 520 D + I + +G+ + N + GY ++ L+K TVF + P L +++ Sbjct: 350 DLVCITDMDGLFIRVNSGGADFLGYGRDEFLKK--TVF--ELVPPYERESLRGLMNSLFA 405 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSH----- 573 +L+ K +++ + +++ + L + D+++ K+++ +L H Sbjct: 406 GNNSLQFECPAVAKSGEIVYTDVRSRRITYHGQDVLLSVVRDVTDRKRDEEELQHYAAEL 465 Query: 574 --AKKIAEKESSH---------------------KSDFLARVSHEIRTPLTAIIGFSEVI 610 AK+I E+ S+H KS+FLA++SHEIRTP+ +I+G ++++ Sbjct: 466 LKAKEIEERNSAHMADTLKKLEEAMTRAEVANRTKSEFLAQMSHEIRTPMNSILGMADML 525 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + R Y + SG +L++++D+LD+SKIESGK+ L ++D+ V E Sbjct: 526 TDTRL----TSEQRNYVSIFRDSGKALLNLIDDILDLSKIESGKLTLEHTKFNIDDLVDE 581 Query: 671 AISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-IS 728 ++ + A +K ++ P D +KQI +N+LSNAI FT SG ++ IS Sbjct: 582 VAGIMSVSAWKKNLIFACHVDPYCPSFFEGDPTRIKQILVNLLSNAIKFTDSGSVVLEIS 641 Query: 729 TTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 ++ S + IL VRD+G+G++ + + + F Q +S + GTGLGL + + +V+ Sbjct: 642 SSPGSQGKTILNMIVRDSGIGISEEKFKDIFENFVQADSSTTRKYGGTGLGLSITRNLVE 701 Query: 787 ANMGKFYIFSTPAKGT 802 G + + + G Sbjct: 702 LMNGHIDVRNVSSGGA 717 >gi|206578572|ref|YP_002236863.1| signal transduction histidine-protein kinase BarA [Klebsiella pneumoniae 342] gi|206567630|gb|ACI09406.1| signal transduction histidine-protein kinase BarA [Klebsiella pneumoniae 342] Length = 916 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 130/237 (54%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + N ++ Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDL----NATQRDHLTT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L ++ E ++L+ A++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVR--DTG 745 NN+P ++ D ++QI N++ NAI FT G +++ SN V + ++ DTG Sbjct: 394 IKNNVPDNVIGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVEQRAISNSRVQIEIQIHDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGS 510 >gi|83310972|ref|YP_421236.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82945813|dbj|BAE50677.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 1036 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 131/239 (54%), Gaps = 3/239 (1%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ + +L AK+ A+ + KSDFL+ +SHE+RTPL AI+GF+++++ R PL + + Sbjct: 641 ERHQQELRLAKEAADSANQAKSDFLSSMSHELRTPLNAILGFAQLLETSRSSPLTDKQRG 700 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + A I + G +L ++N++LD+++IE+G + L E V E + L + YA + Sbjct: 701 Q-AQCIIKGGQHLLQLINEVLDLARIEAGNLALSLEEVEARPLFDEVMDLTRAYAGGRVA 759 Query: 685 LIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 ++ S + D KQ+ LN+ SNA+ + SGG + ++ + + V V D Sbjct: 760 MVDASVPGATASHLRVDYTRFKQVLLNLTSNAVKYGASGGTVTLTMEPGAADSVRFVVTD 819 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G G+ + +PF ++ ++ EGTG+GL ++K +V+A G+ + +GT Sbjct: 820 RGPGIAPEKQALLFRPFNRL-GAEATEIEGTGIGLTISKQLVEAMGGRIGFETATGRGT 877 >gi|298528196|ref|ZP_07015600.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511848|gb|EFI35750.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1287 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/251 (33%), Positives = 130/251 (51%), Gaps = 24/251 (9%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK+ AE + KS+FLA +SHEIRTP+ AIIG S + + R Y I Sbjct: 620 LLQAKEQAEAATQAKSEFLANMSHEIRTPMNAIIGISHLALRSGL----DRRQHSYLTRI 675 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 D + +L I+ND+LD SKIE+ K+ L P +L + +S S+ A EK++ + Sbjct: 676 DGAARSLLGIINDILDFSKIEANKLELEHVPFNLKDVLSRLSSIFDFQAEEKQLKLTFQL 735 Query: 691 ANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIS----TTHTSNEEV-------- 737 + P L D + Q+ N++SNAI FT S G+I++S T++T++E + Sbjct: 736 DPDTPLSLKGDSMRLSQVLTNLISNAIKFT-SHGEIVVSVSPGTSNTAHEAIPECLPAKG 794 Query: 738 ------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + VRD+G GM + + F Q +S R GTGLGL ++K +V+ G Sbjct: 795 YNQVCLMFSVRDSGQGMDQDQASRLFDAFFQADSSITRRFGGTGLGLSISKQLVEMMGGS 854 Query: 792 FYIFSTPAKGT 802 + S P +G+ Sbjct: 855 IQVQSQPGEGS 865 >gi|260771270|ref|ZP_05880197.1| BarA sensory histidine kinase [Vibrio furnissii CIP 102972] gi|260613867|gb|EEX39059.1| BarA sensory histidine kinase [Vibrio furnissii CIP 102972] Length = 933 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 83/252 (32%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 275 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQA-DYLQ 329 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L I+ND+LD SK+E+GK+ L P E + E ++L A+EK + I Sbjct: 330 TIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQETLEEVVNLQATSAHEKGLEITL 389 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDT 744 IP ++ D ++Q+ N++ N+I FT G I + ++V+ VRDT Sbjct: 390 KVDPKIPAGLVGDPLRIQQVLTNLVGNSIKFTERGNIDISVEMRSQRDDVVELQFMVRDT 449 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 450 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTF 509 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 510 WFTLRLHITEMP 521 >gi|168705275|ref|ZP_02737552.1| sensory transduction histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 551 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 20/226 (8%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVI--------KNQRFGPLGNPRYIEYANYIDRSGNL 636 KS+FL+ +SHE+R PL +IIGFSEV+ K QR YA I SG Sbjct: 304 KSEFLSTMSHELRDPLNSIIGFSEVLIAAENLTEKQQR-----------YAGNIMTSGQR 352 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 + ++ND+L+++K+E+GKM LH EP + A A + ++ A +K I +R + + P Sbjct: 353 LTALINDILELAKLEAGKMRLHPEPFNAAAACEHAAAQIRPQAEKKNIDVRVAADPHAPA 412 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 D V QI N+LSNA+ FTP GG++ + T +++L V DTGVG+ E + Sbjct: 413 TRQDAGKVHQIITNLLSNAVKFTPEGGRVTLKAA-TDGTDLVLTVTDTGVGIAPEEQDLI 471 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + F Q N GTGLGL + + + G + S +G+ Sbjct: 472 FEKFRQAANPMTREQGGTGLGLSIVRELAKLLGGDVTVHSELGRGS 517 >gi|119490047|ref|ZP_01622671.1| two-component sensor kinase [Lyngbya sp. PCC 8106] gi|119454199|gb|EAW35351.1| two-component sensor kinase [Lyngbya sp. PCC 8106] Length = 641 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/247 (30%), Positives = 130/247 (52%), Gaps = 8/247 (3%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQRFGPLGNPRYIEYANYIDR 632 A+ + KS+FLA +SHE+RTPLT +IG S + + + EY + I Sbjct: 249 AQSANRAKSEFLATMSHELRTPLTCVIGISATLLRLYSNGAGIKQISREKQQEYLHKIHD 308 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG +L+++ND+L++S++E+GK L SL + + + + A E +L+ + Sbjct: 309 SGEHLLELINDILELSEVEAGKTILQISEFSLTKLAQKTLYSFRERAQEHNVLLISDIQV 368 Query: 693 NIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 +AD R V+++ N+LSNAI FTP GQ+ + N I +++DTG+G++ Sbjct: 369 KPDEDLFIADQRRVEKVLFNLLSNAIKFTPESGQVTLRVGVNKNT-AIFQIQDTGIGISE 427 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + F Q+ +S + + GTGLGL L K +V+ + G + ST G+ + P+ Sbjct: 428 EQQPLLFEKFQQLDSSYRRQYSGTGLGLALTKQLVELHGGVIKLTSTENVGSTFTVHIPI 487 Query: 811 YDTSHPH 817 T P+ Sbjct: 488 QPTPSPN 494 >gi|82702416|ref|YP_411982.1| multi-sensor signal transduction histidine kinase [Nitrosospira multiformis ATCC 25196] gi|82410481|gb|ABB74590.1| multi-sensor signal transduction histidine kinase [Nitrosospira multiformis ATCC 25196] Length = 570 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 91/293 (31%), Positives = 159/293 (54%), Gaps = 10/293 (3%) Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM------HDISEWKQEKNKL 571 SL L+ L IT EE+L R +++L L DI+ K + +L Sbjct: 254 SLFLQGILVDITESKQAEEELKQHRFRLEELVAKRTDELARVNEELRRDITHRKLIEEEL 313 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 AK AEK + KSDFL+ +SHE+R+PL ++GF++++++ P + I+ Sbjct: 314 IKAKTEAEKANLAKSDFLSSMSHELRSPLNVMLGFAQLMESS--SPPPTFTQMTMLKEIN 371 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRTSF 690 +G +L+++N +LD++ IESGK+ + EP+ + E ++E+ ++V+ A E+ I LI Sbjct: 372 SAGWYLLELINKILDLAAIESGKLIVAQEPMCIGEVMAESRTMVEPQAQEQNIRLIFPPS 431 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 ++ + AD VKQ+ +N+LSNAI + GG + +S + T + + VRDTG G+ Sbjct: 432 SDMNFFVRADRTRVKQVLINLLSNAIKYNREGGMVEVSCSMTKPGRLRISVRDTGTGLPP 491 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +L + + F ++ + EGTG+GL + K +V+ G + ST G++ Sbjct: 492 EKLTQLFQQFNRL-GQEAGSVEGTGIGLVVTKQLVELMGGSIGVESTVDVGSV 543 >gi|239625873|ref|ZP_04668904.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520103|gb|EEQ59969.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 840 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/255 (33%), Positives = 133/255 (52%), Gaps = 13/255 (5%) Query: 566 QEKNKLSHAKKIAEKESSH-----KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + + KLS +AEKE + KSDFL+++SHEIRTPL I+G +E+ K+ P Sbjct: 300 RHREKLSSELLLAEKERAEAANRAKSDFLSQMSHEIRTPLNGIMGMAELGKSHTGEP--- 356 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 R + I S +L ++ND+LD+SKIESGK+ LH E L + + ++ + A Sbjct: 357 DRMRNCLDKITLSSTHLLSLINDILDMSKIESGKIELHMERFDLGQLLRALTTVFHVQAV 416 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--V 737 ++I I L D + QI N+LSNA+ FTP+ GQ+ ++ + +E + Sbjct: 417 SRQIDYHIFLYGEIEEYLTGDSLRLNQILTNLLSNALKFTPAQGQVSLNVSELRRDESGI 476 Query: 738 ILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 LR VRDTG G+ +++ + F Q + + GTGLGLP+ K V+ G + Sbjct: 477 WLRFEVRDTGRGIAPENIDRVFEAFTQENSGIARQYGGTGLGLPITKNFVEMMGGSITVS 536 Query: 796 STPAKGTLIEIIFPL 810 S G++ + P Sbjct: 537 SKVGAGSIFTVDIPF 551 >gi|288933810|ref|YP_003437869.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22] gi|288888539|gb|ADC56857.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22] Length = 916 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 130/237 (54%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + N ++ Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDL----NATQRDHLTT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L ++ E ++L+ A++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVR--DTG 745 NN+P ++ D ++QI N++ NAI FT G +++ SN V + ++ DTG Sbjct: 394 IKNNVPDNVIGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVEQRAISNSRVQIEIQIHDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGS 510 >gi|218688881|ref|YP_002397093.1| hybrid sensory histidine kinase TorS [Escherichia coli ED1a] gi|218426445|emb|CAR07271.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli ED1a] Length = 910 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 133/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 432 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 487 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 488 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 544 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 545 TEIADDVPTALMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRTDGEQWLVEVEDSGC 602 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 603 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 658 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 659 RLPLRIATAP 668 >gi|156741047|ref|YP_001431176.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156232375|gb|ABU57158.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 718 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 93/368 (25%), Positives = 186/368 (50%), Gaps = 23/368 (6%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 L + + +G+ +++++G +L N A ++G D +R PF ++ + ++ Sbjct: 357 HLGQVFASMPNGLVLMDQQGRVLRHNPAWLMIWGL-TPDAMRDPF--YIPLDLVPLLLPR 413 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 + + L+L E G ++ SL + + P L+ + +L Sbjct: 414 MRDPLALT-----ELCAEGQRSPTEVQSLLVRLNN-PHQEVMLLSAPTRDSFGSLTGRLW 467 Query: 573 HAKKIA-EKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + E+E+ KS+FL+ VSHE+RTPLT+I+G++E++ + F P G R E+ + Sbjct: 468 IVSDVTREREADRLKSEFLSIVSHELRTPLTSIMGYTELLLARDFTP-GEQR--EFVKTV 524 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 N + IV DLL ++++E+G + L VSL + +S+ + + + K ++ Sbjct: 525 YNEANHLYQIVEDLLGVTRLEAGNVRLDRWAVSLRQIISDLTAHLSNQISGKHTML-IDI 583 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------HTSNEEVILRVR 742 +P + AD V+Q+ +N+++NA+ ++P+GG+I ++ T H + V++ + Sbjct: 584 PPYLPPVYADRDKVRQVLVNLITNAVKYSPNGGEIRLTVTEHADLPPDHPKGQFVLVAIS 643 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D G+G+ +L + + F ++ N R GTGLGL +AKA+V+ + G+ + S +G+ Sbjct: 644 DQGIGIAPEDLPRIWERFYRVDNGNTRRIGGTGLGLSIAKALVELHGGRIWAESKLNRGS 703 Query: 803 LIEIIFPL 810 P+ Sbjct: 704 TFSFTLPV 711 >gi|29347950|ref|NP_811453.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|253572542|ref|ZP_04849944.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|29339852|gb|AAO77647.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|251837957|gb|EES66046.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 391 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/265 (32%), Positives = 136/265 (51%), Gaps = 14/265 (5%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT+HDI++ KQ + +L+ AK+ AE KS FLA +SHEIRTPL AI GF+E++ + Sbjct: 138 LTVHDITQLKQAEKQLALAKEKAENADLSKSTFLANMSHEIRTPLNAITGFAEILASAN- 196 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 +Y I + +L+L +VND+LD+SKIE+G + + V ++ +S+ L Sbjct: 197 ---TEEEKAQYQEIIKMNADLLLQLVNDILDMSKIEAGTLEFVYTKVDINLLLSDLRQLF 253 Query: 676 QLYANEKRILIRTSFANNIP--RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 Q+ N+ I+ ++P I D V Q+ N +NAI FT G IS + + Sbjct: 254 QMKVNDAGGNIQIIAEPSLPSCSIETDRNRVAQVLSNFTTNAIKFTQEG---TISIGYEA 310 Query: 734 NE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + E+ V DTG G+ +L + F ++ ++ GTGLGL ++K +V+ G+ Sbjct: 311 RDTELYFYVTDTGAGIPADKLPEVFGRFVKLNKDKK----GTGLGLSISKTIVNKLEGQI 366 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHPH 817 S KG+ P P Sbjct: 367 GADSVEGKGSTFWFTIPYRTCGRPE 391 >gi|332766037|gb|EGJ96247.1| his Kinase A domain protein [Shigella flexneri 2930-71] Length = 933 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 7/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 426 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 484 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 485 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 541 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + Sbjct: 542 PLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGD 599 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 600 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 659 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ + PLY +P Sbjct: 660 SEPGMGSQFTVRIPLYGAQYPQ 681 >gi|332755266|gb|EGJ85630.1| sensor kinase protein rcsC [Shigella flexneri K-671] Length = 880 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 376 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 434 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 435 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 491 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 492 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 549 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 550 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 609 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 610 GMGSQFTVRIPLYGAQYPQ 628 >gi|304312091|ref|YP_003811689.1| sensor histidine kinase/response regulator [gamma proteobacterium HdN1] gi|301797824|emb|CBL46046.1| sensor histidine kinase/response regulator [gamma proteobacterium HdN1] Length = 840 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 130/244 (53%), Gaps = 16/244 (6%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 K +IA KS+FLA +SHEIRTP+ +IG SE++ + + RY+ + Sbjct: 427 KAEQETRIARHNMRAKSNFLAMMSHEIRTPMNGVIGISELLSHTQLDS-AQQRYV---ST 482 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG +L +VND+LD SK+E+ K+ L P L E + E + ++ + +R Sbjct: 483 IRNSGEALLRLVNDILDFSKLEARKLTLEDIPFHLPEMLQECVDILTPKIQGSAVDLRLQ 542 Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------HTSNEEVILR 740 +N +P+++ D ++QI LN+ NA+ FT G + I+ + H SN++++LR Sbjct: 543 ISNKLPKMVNGDPTRLRQIILNLGGNALKFTRK-GHVTIAVSFQDENFQPHQSNDDLLLR 601 Query: 741 --VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG+G+T ++++ +PF Q S + GTGLGL + K + + G + S Sbjct: 602 FTVSDTGIGLTEEQIQRLFQPFQQAEISTARQFGGTGLGLVICKDLAELMGGSIGVHSIS 661 Query: 799 AKGT 802 +G Sbjct: 662 GEGA 665 >gi|301647691|ref|ZP_07247485.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 146-1] gi|301074221|gb|EFK89027.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 146-1] gi|315615480|gb|EFU96112.1| sensor kinase protein rcsC [Escherichia coli 3431] Length = 933 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 7/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 426 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 484 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 485 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 541 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + Sbjct: 542 PLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGD 599 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 600 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 659 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ + PLY +P Sbjct: 660 SEPGMGSQFTVRIPLYGAQYPQ 681 >gi|298492942|ref|YP_003723119.1| integral membrane sensor signal transduction histidine kinase ['Nostoc azollae' 0708] gi|298234860|gb|ADI65996.1| integral membrane sensor signal transduction histidine kinase ['Nostoc azollae' 0708] Length = 574 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/260 (30%), Positives = 136/260 (52%), Gaps = 13/260 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I + +L AK++AE S KS FLA VSHE+RTPL A+IG S+++K+ + Sbjct: 314 IERVSERTRQLQQAKELAEAASKAKSQFLANVSHELRTPLNAVIGLSQLLKDDAVDIGAS 373 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P +I I+ +G +L+++ND+LD+SKIE+GKM L+ E + ++ + V+ Sbjct: 374 PDFITDLETINSAGRHLLELINDILDVSKIEAGKMTLYPETFDIITLINNVVLTVKPAIE 433 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + + + + AD ++Q+ LN+LSNA FT +G ++ T ++ +IL+ Sbjct: 434 KNGNTLVLECDEYLGTMYADQTRMRQVLLNLLSNAAKFTTNGK---VTLTVKIDKTIILK 490 Query: 741 ----------VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 V D G+GM+ + +K +PF Q S + GTGLGL +++ G Sbjct: 491 EAPFGSIIFTVTDNGIGMSPSQEQKLFQPFIQGDISTTKKYGGTGLGLAISRHFCQMMGG 550 Query: 791 KFYIFSTPAKGTLIEIIFPL 810 + + S G+ ++ PL Sbjct: 551 EILVNSQLGVGSNFKVSLPL 570 >gi|218890756|ref|YP_002439620.1| putative two-component sensor [Pseudomonas aeruginosa LESB58] gi|218770979|emb|CAW26744.1| probable two-component sensor [Pseudomonas aeruginosa LESB58] Length = 741 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 137/252 (54%), Gaps = 10/252 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E ++ +L A + A++ + KS FLA +SHEIRTP+ A+IG E++ QR P Sbjct: 223 DITERERLARQLREAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILELVL-QRLAPEQ 281 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R Y + +G+L L ++ D+LD++KIESG + L E V L V + + A Sbjct: 282 RERASLEVAY-EAAGSLQL-LIGDILDVAKIESGHLTLTPERVRLRHVVESVRRMFEGLA 339 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 +K + + + R +L D KQ+ N++SNAI FT GQ+ I S +E Sbjct: 340 RQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTER-GQVTIRLQERSLDEGR 398 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 I+R V D+G+G+ + + +PF Q+ + ++G GTGLGL + + +VD G + Sbjct: 399 AIVRVDVEDSGIGIAPADQARLFQPFIQVAKGRTVQG-GTGLGLAICRKLVDLMGGDVEM 457 Query: 795 FSTPAKGTLIEI 806 S P KGT + + Sbjct: 458 HSEPGKGTRVSL 469 >gi|117624412|ref|YP_853325.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli APEC O1] gi|115513536|gb|ABJ01611.1| hybrid sensory kinase in two-component regulatory system with RcsB and RojN [Escherichia coli APEC O1] Length = 933 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 7/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 426 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 484 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 485 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 541 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + Sbjct: 542 PLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGD 599 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 600 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 659 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ + PLY +P Sbjct: 660 SEPGMGSQFTVRIPLYGAQYPQ 681 >gi|309786603|ref|ZP_07681224.1| sensor kinase protein rcsC [Shigella dysenteriae 1617] gi|81240324|gb|ABB61034.1| sensor for ctr capsule biosynthesis [Shigella dysenteriae Sd197] gi|308925512|gb|EFP70998.1| sensor kinase protein rcsC [Shigella dysenteriae 1617] Length = 933 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 7/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 426 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 484 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 485 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 541 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + Sbjct: 542 PLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGD 599 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 600 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 659 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ + PLY +P Sbjct: 660 SEPGMGSQFTVRIPLYGAQYPQ 681 >gi|332534398|ref|ZP_08410238.1| hypothetical protein PH505_bh00050 [Pseudoalteromonas haloplanktis ANT/505] gi|332036132|gb|EGI72607.1| hypothetical protein PH505_bh00050 [Pseudoalteromonas haloplanktis ANT/505] Length = 939 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/238 (34%), Positives = 131/238 (55%), Gaps = 8/238 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTPLTAI+G ++ + N+ + P + I R + + ++ND+ Sbjct: 474 KSQFLANISHEIRTPLTAILGQTDALINELYEP---ESLKDELRVIQRHSDHLKSLINDV 530 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSE--AISLVQLYANEKRILIRTSFANNIPRILADLR 702 LD+SKIE+ ++ L+ + E V++ A+ + Q A R+++ N L DL Sbjct: 531 LDLSKIEANRLELNISCFDIVELVNDVHAMFITQAKAKNLRLILDNQVGNEFYTKL-DLI 589 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 VKQI +N+ +NAI FT +G QIII+ + S + +++ V+DTG+GM++ +L+ + F Q Sbjct: 590 RVKQILINLCANAIKFTHAG-QIIIAL-NKSEQGLVIIVKDTGIGMSSKQLKLIFECFSQ 647 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 NS R GTGLGL L++ + G + S KG+ P + + I Sbjct: 648 ADNSISRRFGGTGLGLSLSQQLAAMMGGYISVQSEYKKGSQFSFFLPCAEVNKSQSLI 705 >gi|269101851|ref|ZP_06154548.1| BarA sensory histidine kinase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161749|gb|EEZ40245.1| BarA sensory histidine kinase [Photobacterium damselae subsp. damselae CIP 102761] Length = 921 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 133/252 (52%), Gaps = 9/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL ++GF+ + R NP +Y Sbjct: 275 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVLGFTRQMLKTRL----NPSQQDYLLT 330 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S N +L I+ND+LD SK+E+GK+ L P E++ E + L+ A+EK + + Sbjct: 331 IEKSANNLLTIINDILDFSKLEAGKLLLENIPFDFAESLDEVMRLLAPTAHEKGLELTLK 390 Query: 690 FANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI---LRVRDT 744 + I P ++ D ++Q+ N++ NA+ FT G + + ++E I VRDT Sbjct: 391 VDDRIPPSLIGDALRIQQVLTNLIGNAVKFTERGNIDVTVELKSDKDDEGIELQFMVRDT 450 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEVSLTSRLHQGSTF 510 Query: 805 EIIFPLYDTSHP 816 L T P Sbjct: 511 WFTVRLTKTDLP 522 >gi|107103463|ref|ZP_01367381.1| hypothetical protein PaerPA_01004533 [Pseudomonas aeruginosa PACS2] Length = 1212 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 143/253 (56%), Gaps = 12/253 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DI+E +Q ++L AK +A++ S K+ FLA +SHEIRTP+ A+IG E+ +K G + Sbjct: 685 DITEHRQLIDELEEAKNLADEASRAKTTFLATMSHEIRTPMNAVIGILELALKRAETGRV 744 Query: 619 GNPRY-IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 I YA S +L+++ D+LDI++IESG+++L + +L E V + + Sbjct: 745 DRSSIEIAYA-----SAKSLLELIGDILDIARIESGRLSLSPKRANLRELVESVARVFEG 799 Query: 678 YANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTS 733 A +KR+ + ++I +L D KQI N++SNAI FT G +I S Sbjct: 800 LARQKRLSLVLEIDSSINGDVLLDAMRFKQILSNLVSNAIKFTDEGSIRIRIDGRQVEPS 859 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +V L V DTG+G++ + ++ +PF Q+ + Q EGTGLGL +++++ + G+ Sbjct: 860 LLQVNLCVEDTGIGISLGDQQQLFRPFAQVNRNLQ-NTEGTGLGLVISRSLCEMMGGRLV 918 Query: 794 IFSTPAKGTLIEI 806 + S +GT I++ Sbjct: 919 MSSELGQGTRIDV 931 >gi|330950735|gb|EGH50995.1| PAS protein [Pseudomonas syringae Cit 7] Length = 387 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 87/264 (32%), Positives = 138/264 (52%), Gaps = 12/264 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ--RFGP 617 DI+E KQ + +L A +A + + KS FLA +SHEIRTP+ AIIG E+ Q R G Sbjct: 86 DITERKQLEQQLQEAMHLAAQANEAKSVFLASMSHEIRTPMGAIIGLLELECEQALRLGR 145 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + + + ++ A+ RS ++ ++ + LD+++IE+G M L SL+ I L Sbjct: 146 IPS-QGLQVAH---RSATELVALIGESLDLARIEAGGMQLSLAVTSLEGLFDGVIELFSA 201 Query: 678 YANEKRILIRTSFANNI--PRILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSN 734 A EK + +R F+ L LR ++Q+ N+L NA+ FT G ++ + T S Sbjct: 202 QAREKGVELRLEFSGQARGDYWLDPLR-LRQVLHNVLGNALKFTRQGAVVVTLDVTSDSP 260 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 E LR ++D+G G+ ++ +PF Q + G+GLGL + + +V+ G Sbjct: 261 ESTRLRIGIQDSGEGIDPQRQQQVFQPFTQANDDTAAHYGGSGLGLSITRQLVELMKGDI 320 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHP 816 + S P KGTL+ I PL S P Sbjct: 321 SLQSEPGKGTLVTIDLPLTRVSEP 344 >gi|328474126|gb|EGF44931.1| hybrid sensory histidine kinase BarA [Vibrio parahaemolyticus 10329] Length = 932 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 87/253 (34%), Positives = 137/253 (54%), Gaps = 12/253 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSNSQ-TDYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L+I+ND+LD SK+E+GK+ L P E++ E I+L A+EK + I Sbjct: 331 TIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITL 390 Query: 689 SFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRD 743 I P ++ D ++QI N++ N+I FT G I +S S E+ VRD Sbjct: 391 KVDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGN-IDVSVEMRSQAGDSVELQFMVRD 449 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 450 TGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGST 509 Query: 804 IEIIFPLYDTSHP 816 L T P Sbjct: 510 FWFTLRLNSTEMP 522 >gi|323496760|ref|ZP_08101805.1| histidine kinase [Vibrio sinaloensis DSM 21326] gi|323318185|gb|EGA71151.1| histidine kinase [Vibrio sinaloensis DSM 21326] Length = 1098 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 84/270 (31%), Positives = 134/270 (49%), Gaps = 17/270 (6%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI++ K + H + A S KS FLA +SHEIRTP+ ++G ++ Sbjct: 412 DITKEKNAQENFRHESETALAASEAKSMFLANMSHEIRTPMNGVVGMLSLLSETEL---- 467 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N I S +L I+ND+LD SKIE+G+M+L PV L + + + ++ L A Sbjct: 468 NTEQKNMVTTIKDSALTLLHIINDILDFSKIEAGQMSLESVPVELQKLIERTLDVLCLQA 527 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG----GQIIISTTHTSN 734 + K I + ++ N+P+ I++D + Q+ LNI+ NA+ FT S G++ +S T + Sbjct: 528 SNKGIELYLTYDANLPKVIMSDSVRLSQVLLNIIGNAVKFTDSNDDVKGKVWVSATLNDH 587 Query: 735 E-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 E E+I V D G+GMT ++++ F Q S GTGLGL + ++++ Sbjct: 588 EIAPYIEII--VEDNGIGMTEEQMKRLFNAFTQADTSTTRLYGGTGLGLSITNSLLELMG 645 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDT-SHPHD 818 G + S G+ I P PHD Sbjct: 646 GNIKVDSHHGSGSRFYIELPFIPAEDEPHD 675 >gi|303326355|ref|ZP_07356798.1| sensory box sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] gi|302864271|gb|EFL87202.1| sensory box sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] Length = 667 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 93/257 (36%), Positives = 136/257 (52%), Gaps = 14/257 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E + + L AK AE ++ KS FLA +SHEIRTP+ I+G + + N Sbjct: 262 DVTERRLHERMLREAKNEAEAANAAKSIFLANMSHEIRTPMNGIMGMAYLALNTDL---- 317 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM---NLHFEPVSLDEAVSEAISLVQ 676 P+ +Y I + +LDI+NDLLD SKIE+ M NL F+P EAV ++L+Q Sbjct: 318 TPQQRDYIEKIHGTCVSLLDIINDLLDFSKIEANHMELENLPFQPAHEIEAV---LTLLQ 374 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 A K++ + T NIP +L D ++QI LN+ SNA+ F+ G +I + H + Sbjct: 375 PKAQAKKLGLETVIDPNIPTVLSGDALRLRQILLNLGSNAVKFSEHGTVRIDLELAHRTT 434 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + V LR V D G+GM+ E + KPF Q S R GTGLGL L + + G Sbjct: 435 DMVCLRCSVSDEGIGMSPEEQARIFKPFSQADTSITRRFGGTGLGLALCRRLTALMGGGI 494 Query: 793 YIFSTPAKGTLIEIIFP 809 + S KG++ + P Sbjct: 495 SVESEEGKGSVFRVELP 511 >gi|163844116|ref|YP_001628520.1| histidine kinase [Brucella suis ATCC 23445] gi|163674839|gb|ABY38950.1| histidine kinase [Brucella suis ATCC 23445] Length = 859 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 140/254 (55%), Gaps = 4/254 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT D+++ + + L + E K+DF+ VS+E+R+PLT IIGF+E+++ F Sbjct: 599 LTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAF 658 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L N R +EY ++I S +++L IVND+LD++ +++G M L VS+ EA+S A S V Sbjct: 659 GSL-NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRV 717 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + I + A+++ AD V+Q+ N+LSNA+++ P G I++ Sbjct: 718 SERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVAR-DGA 776 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +V+ V D G GM + L+ K F PN + G GLGL + K+ V+ + G+ I Sbjct: 777 DVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRR--RGAGLGLAIVKSFVELHGGRVEID 834 Query: 796 STPAKGTLIEIIFP 809 + +GT + FP Sbjct: 835 TGEERGTTVICRFP 848 >gi|161486256|ref|NP_753053.2| hybrid sensory histidine kinase TorS [Escherichia coli CFT073] gi|306812567|ref|ZP_07446760.1| hybrid sensory histidine kinase TorS [Escherichia coli NC101] gi|222032709|emb|CAP75448.1| Sensor protein torS [Escherichia coli LF82] gi|305853330|gb|EFM53769.1| hybrid sensory histidine kinase TorS [Escherichia coli NC101] gi|307552818|gb|ADN45593.1| sensor histidine kinase/response regulator TorS [Escherichia coli ABU 83972] gi|312945500|gb|ADR26327.1| hybrid sensory histidine kinase TorS [Escherichia coli O83:H1 str. NRG 857C] Length = 910 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 133/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 432 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 487 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 488 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 544 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 545 TEIADDVPTALMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRTDGEQWLVEVEDSGC 602 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 603 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 658 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 659 RLPLRIATAP 668 >gi|158338213|ref|YP_001519390.1| serine/threonine protein kinase and signal transduction histidine kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris marina MBIC11017] gi|158308454|gb|ABW30071.1| serine/threonine protein kinase and signal transduction histidine kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris marina MBIC11017] Length = 3309 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 137/243 (56%), Gaps = 10/243 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KNQRFGPLGNPRY 623 +Q + L+ AK+IA+ + KS+FLA +SHE+RTPL I+G+++++ ++ + P + R Sbjct: 2823 EQTNHALAEAKEIADSANQAKSEFLANMSHELRTPLNGILGYAQILNRSDQISP-RDKRG 2881 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 +E I + G+ +L ++ND+LD+SKIE+ K+ L+ P L +S + + L A +K Sbjct: 2882 LE---VIHQCGSHLLTLINDILDLSKIEARKLELNPHPTDLLTLLSSVVDMFHLKATQKG 2938 Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVIL 739 I + N++P+ + D + +Q+ +N++ NA+ FT G QI+ + + Sbjct: 2939 IELLFQLDNDLPKGVEIDEKRFRQVLINLMGNALKFTEKGSVTFQILQLEANAGQATLRF 2998 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 + DTGVG+ +L + K F Q+ + + EGTGLGL +++ +V G + S Sbjct: 2999 AIIDTGVGIATEQLSRLFKAFEQVGDPRN-HTEGTGLGLAISQRIVQLMGGDIQVSSQLG 3057 Query: 800 KGT 802 G+ Sbjct: 3058 AGS 3060 >gi|110641175|ref|YP_668905.1| hybrid sensory histidine kinase TorS [Escherichia coli 536] gi|110342767|gb|ABG69004.1| sensor protein TorS [Escherichia coli 536] Length = 910 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 133/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 432 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 487 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 488 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 544 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 545 TEIADDVPTALMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRTDGEQWLVEVEDSGC 602 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 603 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 658 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 659 RLPLRIATAP 668 >gi|333002945|gb|EGK22501.1| sensor kinase protein rcsC [Shigella flexneri K-272] Length = 933 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 7/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 426 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 484 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 485 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 541 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + Sbjct: 542 PLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGD 599 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 600 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 659 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ + PLY +P Sbjct: 660 SEPGMGSQFTVRIPLYGAQYPQ 681 >gi|110638476|ref|YP_678685.1| sensor histidine kinase/response regulator fusion protein [Cytophaga hutchinsonii ATCC 33406] gi|110281157|gb|ABG59343.1| sensor histidine kinase/response regulator fusion protein [Cytophaga hutchinsonii ATCC 33406] Length = 1158 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 135/245 (55%), Gaps = 15/245 (6%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E S +KS+FLA +SHE+RTPL +I+ S+++ + + L + + +E+A I SG+ +L Sbjct: 467 ELNSKYKSEFLANMSHELRTPLNSILILSQLLADNKNKSL-SEKEVEFAQNICNSGSDLL 525 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-- 696 +++N++LD+SK+ESGK++L E VSL + S ++ A +K I + + + + + Sbjct: 526 ELINEILDLSKVESGKLDLEIEDVSLSKICSSIHAMFDEVAKKKLIQFKVNCSEKLLQTT 585 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI------------LRVRDT 744 + D + ++QI N+LSNA FT + G + S V L V DT Sbjct: 586 VHTDRQRLEQIIRNLLSNAFKFTSAKGAVTFKIEAASESTVFRNKNLNAHNCLALSVTDT 645 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + + F Q+ S + + GTGLGL +++ + A G+ ++FS KG+ Sbjct: 646 GIGIPQNKQQIIFEAFQQVDGSTKRKYGGTGLGLSISRELSTALGGEIHVFSEEDKGSTF 705 Query: 805 EIIFP 809 + P Sbjct: 706 TLFIP 710 >gi|301023116|ref|ZP_07186923.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 69-1] gi|300397237|gb|EFJ80775.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 69-1] Length = 904 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 135/250 (54%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T A+++P ++ D R ++Q+ N+LSNA+ FT GQI++ + T E+ ++ V D+G Sbjct: 535 TEIADDVPTALMGDPRRIRQVITNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|295103585|emb|CBL01129.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii SL3/3] Length = 1079 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 84/257 (32%), Positives = 136/257 (52%), Gaps = 20/257 (7%) Query: 566 QEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN---- 620 QE N KL A + AE + KS FL+ +SH+IRTP+ AIIGF+ + L N Sbjct: 549 QELNAKLQVAVEKAESANRAKSTFLSNMSHDIRTPMNAIIGFTTL-------ALSNIDDT 601 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV--QLY 678 R +Y S N +L ++ND+LD+S+IESGK++L V+L + + + ++V Q+Y Sbjct: 602 DRVKDYLGKTLASSNHLLSLINDVLDMSRIESGKIHLEEVEVNLSDVLHDLKTIVSGQIY 661 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--- 735 A + + + + + D + QI LN+LSNAI FTP+GG + + + + Sbjct: 662 AKQLELYMDAMDVTD-EDVYCDKTRLNQILLNLLSNAIKFTPAGGTVSVRVRQLAGKVRG 720 Query: 736 --EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + R++D G+GM+ +K +PF + S +GTGLG+ + K +VD G Sbjct: 721 CGQYEFRIKDNGIGMSQEFAQKIFEPFERERTSTVSGIQGTGLGMAITKNIVDMMGGTIE 780 Query: 794 IFSTPAKGTLIEIIFPL 810 + + KGT + P+ Sbjct: 781 VQTAQGKGTEFTVCVPM 797 >gi|290511110|ref|ZP_06550479.1| two-component system, NarL family, sensor histidine kinase BarA [Klebsiella sp. 1_1_55] gi|289776103|gb|EFD84102.1| two-component system, NarL family, sensor histidine kinase BarA [Klebsiella sp. 1_1_55] Length = 916 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 130/237 (54%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + N ++ Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDL----NATQRDHLTT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L ++ E ++L+ A++K + + + Sbjct: 334 IERSANNLLAIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVR--DTG 745 NN+P ++ D ++QI N++ NAI FT G +++ SN V + ++ DTG Sbjct: 394 IKNNVPDNVIGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVEQRAISNSRVQIEIQIHDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S R GTGLGL + + +V G S P +G+ Sbjct: 454 IGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGS 510 >gi|260868935|ref|YP_003235337.1| hybrid sensory kinase RcsC in two-component regulatory system with RcsB and YojN [Escherichia coli O111:H- str. 11128] gi|257765291|dbj|BAI36786.1| hybrid sensory kinase RcsC in two-component regulatory system with RcsB and YojN [Escherichia coli O111:H- str. 11128] Length = 933 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 7/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 426 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 484 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 485 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 541 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + Sbjct: 542 PLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGD 599 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 600 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 659 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ + PLY +P Sbjct: 660 SEPGMGSQFTVRIPLYGAQYPQ 681 >gi|238894393|ref|YP_002919127.1| hypothetical protein KP1_2376 [Klebsiella pneumoniae NTUH-K2044] gi|238546709|dbj|BAH63060.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 897 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 129/255 (50%), Gaps = 5/255 (1%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI+ K + A K A + + KS FLA +SHEIRTP+ I+G +++ + Sbjct: 240 TLQDITRRKAAELLAIEAAKEAREANEAKSAFLANMSHEIRTPMNGILGMTQLCLDT--- 296 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + EY + + S +L I+ND+LD S+IESGKM + EP+ + V I Sbjct: 297 PLTAEQR-EYLSLVMSSAQSLLHIINDILDFSRIESGKMQVDVEPLEIRPFVQSLIRPHM 355 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A+EK I + + +P +L D ++QI N+L NA+ FT G ++ + Sbjct: 356 PAASEKGIELLVDISPAVPEVLIVDGPRLRQILTNLLGNALKFTHQGEVLLAIAPAEDDN 415 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 R+RDTG+G+ + + + F Q +S R GTGLGL ++ +V G+ + Sbjct: 416 RWRFRIRDTGIGIAPEKQKAIFEAFSQADSSTTRRYGGTGLGLTISARLVSLMGGELTVE 475 Query: 796 STPAKGTLIEIIFPL 810 S P G+ PL Sbjct: 476 SQPGAGSEFAFTLPL 490 >gi|94263606|ref|ZP_01287416.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93456026|gb|EAT06177.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 529 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/253 (30%), Positives = 129/253 (50%), Gaps = 19/253 (7%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG------PLGNPRYI 624 ++H K+I K DF++ VSHE+RTPLT+++GF+ +I + G P +PR + Sbjct: 259 ITHQKEI----ERMKDDFVSAVSHELRTPLTSVLGFARLIAKKLEGVILPVVPRQDPR-V 313 Query: 625 EYA--------NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 E A N I G + ++N++LD+SK+E+GK+ EPV+ +E V A+ Sbjct: 314 ERAVRQVGDNINIIVTEGERLTKLINEVLDLSKMEAGKVEWQLEPVTAEEIVKRALDATT 373 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 E + + +P + D + Q+ +N+++NA FT G + + E Sbjct: 374 GLFGEGAPELLSEVEPELPVLCCDRDRIMQVLINLIANARKFTDHGRVTVRARRAAGEEA 433 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V+ V D+G G+T L+ + F Q+ ++ R +GTGLGLP+ K +V+ + G S Sbjct: 434 VLFEVSDSGCGITPENLQSVFEKFKQVGDTLTDRPKGTGLGLPICKEIVEYHGGTVTAES 493 Query: 797 TPAKGTLIEIIFP 809 TP G+ P Sbjct: 494 TPGAGSTFRFTLP 506 >gi|333016950|gb|EGK36274.1| sensor kinase protein rcsC [Shigella flexneri K-227] Length = 880 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 376 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 434 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 435 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 491 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 492 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 549 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 550 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 609 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 610 GMGSQFTVRIPLYGAQYPQ 628 >gi|170681062|ref|YP_001744182.1| hybrid sensory histidine kinase TorS [Escherichia coli SMS-3-5] gi|170518780|gb|ACB16958.1| TMAO reductase system sensor TorS [Escherichia coli SMS-3-5] Length = 900 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 136/250 (54%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNTQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIHLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT GQI++ + T E+ ++ V D+G Sbjct: 535 TAIADDVPTALMGDPRRIRQVITNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|107102594|ref|ZP_01366512.1| hypothetical protein PaerPA_01003658 [Pseudomonas aeruginosa PACS2] Length = 705 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 137/252 (54%), Gaps = 10/252 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E ++ +L A + A++ + KS FLA +SHEIRTP+ A+IG E++ QR P Sbjct: 187 DITERERLARQLREAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILELVL-QRLAPEQ 245 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R Y + +G+L L ++ D+LD++KIESG + L E V L V + + A Sbjct: 246 RERASLEVAY-EAAGSLQL-LIGDILDVAKIESGHLTLTPERVRLRHVVESVRRMFEGLA 303 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 +K + + + R +L D KQ+ N++SNAI FT GQ+ I S +E Sbjct: 304 RQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTER-GQVTIRLQERSLDEGR 362 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 I+R V D+G+G+ + + +PF Q+ + ++G GTGLGL + + +VD G + Sbjct: 363 AIVRVDVEDSGIGIAPADQARLFQPFIQVAKGRTVQG-GTGLGLAICRKLVDLMGGDVEM 421 Query: 795 FSTPAKGTLIEI 806 S P KGT + + Sbjct: 422 HSEPGKGTRVSL 433 >gi|81245959|gb|ABB66667.1| sensor for ctr capsule biosynthesis [Shigella boydii Sb227] Length = 933 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 7/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 426 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 484 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 485 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 541 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + Sbjct: 542 PLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGD 599 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 600 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 659 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ + PLY +P Sbjct: 660 SEPGMGSQFTVRIPLYGAQYPQ 681 >gi|15598240|ref|NP_251734.1| two-component sensor [Pseudomonas aeruginosa PAO1] gi|9949149|gb|AAG06432.1|AE004729_6 probable two-component sensor [Pseudomonas aeruginosa PAO1] Length = 741 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 137/252 (54%), Gaps = 10/252 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E ++ +L A + A++ + KS FLA +SHEIRTP+ A+IG E++ QR P Sbjct: 223 DITERERLARQLREAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILELVL-QRLAPEQ 281 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R Y + +G+L L ++ D+LD++KIESG + L E V L V + + A Sbjct: 282 RERASLEVAY-EAAGSLQL-LIGDILDVAKIESGHLTLTPERVRLRHVVESVRRMFEGLA 339 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 +K + + + R +L D KQ+ N++SNAI FT GQ+ I S +E Sbjct: 340 RQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTER-GQVTIRLQERSLDEGR 398 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 I+R V D+G+G+ + + +PF Q+ + ++G GTGLGL + + +VD G + Sbjct: 399 AIVRVDVEDSGIGIAPADQARLFQPFIQVAKGRTVQG-GTGLGLAICRKLVDLMGGDVEM 457 Query: 795 FSTPAKGTLIEI 806 S P KGT + + Sbjct: 458 HSEPGKGTRVSL 469 >gi|24372170|ref|NP_716212.1| sensory box histidine kinase/response regulator [Shewanella oneidensis MR-1] gi|24346071|gb|AAN53657.1|AE015504_7 sensory box histidine kinase/response regulator [Shewanella oneidensis MR-1] Length = 1188 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 87/250 (34%), Positives = 131/250 (52%), Gaps = 8/250 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ K + L AK+ AE + +KS+FLA +SHEIRTP+ AIIG ++ + Sbjct: 646 THKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLT 705 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 Y+E A + S +L I+ND+LD SKIE+GK+ L P LD+ + A+ L Sbjct: 706 A-QQKDYLEKAGF---SAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNA 761 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 L A E+ + + IL D + Q+ +N+LSNA+ FT SG ++ + Sbjct: 762 LKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGEIELGCEDVGERD 821 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + L+ VRDTG+G++ + EK F Q S + GTGLGL ++K +V GK Sbjct: 822 HRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKM 881 Query: 793 YIFSTPAKGT 802 + S G+ Sbjct: 882 QVQSELGVGS 891 >gi|83942502|ref|ZP_00954963.1| PAS [Sulfitobacter sp. EE-36] gi|83846595|gb|EAP84471.1| PAS [Sulfitobacter sp. EE-36] Length = 698 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 103/402 (25%), Positives = 187/402 (46%), Gaps = 47/402 (11%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 ++++R+ EV+ L S +EA +DG + + + +L +N +++ P E + KP T F Sbjct: 300 QVSERRKRAEVL-LSSGIEALNDGFVMFDAQDRLLLSNSKYKEMYDLPSEVL--KPGTPF 356 Query: 501 LEQNTPSV------MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFS-S 552 E V M Y E ++ R + + S E+ L R+I P + Sbjct: 357 AELLRIGVKSKQFPMGRY-NEEEWIERRLAIHRENRTSETEQHLWGGRVIKASDRPLADG 415 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 Y D++E LSHAK AE S K+DF+ +SHE+RTPLT I+G +++ +N Sbjct: 416 SYVGLRVDVTE-------LSHAKDAAEAASKAKTDFMGVLSHELRTPLTVIMGVAQLSRN 468 Query: 613 QRF---------------------GPLGNPRYIEYANYIDR---SGNLVLDIVNDLLDIS 648 R L + Y + + ++R SG +L ++N++LD++ Sbjct: 469 ARMLSSSKALLKGYEDGEISHAEAKRLLDEMYDQLSGLMNRLVQSGEHLLHLINEILDVA 528 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708 KIESG + + P ++ + V I ++ +++K + + AD +QI Sbjct: 529 KIESGSLVIEPSPCAVQDIVDPVIEQLRTLSSKKGLAF--DVVQEADMVFADKVRARQIL 586 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 N++ NAI FT +G + + V V D+G G+ EL+ + F Q+ ++ Sbjct: 587 FNLIGNAIKFTDTG--FVRLVVKPVGDVVSFEVHDSGAGIPEAELQSIFEVFYQVDSTAT 644 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 R GTG+GL +++++ + G + S +G+ + P+ Sbjct: 645 RRAGGTGMGLAISRSLAEMQGGSLSVSSVVGQGSCFILTLPI 686 >gi|310766624|gb|ADP11574.1| hybrid sensory histidine kinase BarA [Erwinia sp. Ejp617] Length = 909 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 133/237 (56%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK+ A++ + KS+FLA +SHE+RTPL +IGF+ Q + N +Y + Sbjct: 278 ELDLAKRRAQEAARIKSEFLANMSHELRTPLNGVIGFTR----QTLKTMLNSTQRDYLHT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E + L+ A+EK + + + Sbjct: 334 IERSANNLLSIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILRVRDTG 745 +++P + D ++QI +N+L NAI FT SG I + SN E+ +++ DTG Sbjct: 394 IQSDVPDNAIGDPLRMQQIIVNLLGNAIKFTESGNIDIRVEKRALSNNRMELEVQIHDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++ + + + F Q S R GTGLGL + + +V+ G+ S +G+ Sbjct: 454 IGISEKQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGS 510 >gi|292487219|ref|YP_003530091.1| sensor histidine kinase/response regulator [Erwinia amylovora CFBP1430] gi|292900406|ref|YP_003539775.1| two-component system, sensor kinase and response regulator [Erwinia amylovora ATCC 49946] gi|291200254|emb|CBJ47382.1| two-component system, sensor kinase and response regulator [Erwinia amylovora ATCC 49946] gi|291552638|emb|CBA19683.1| sensor histidine kinase/response regulator [Erwinia amylovora CFBP1430] Length = 909 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 132/237 (55%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ Q N +Y + Sbjct: 278 ELDMAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTR----QTLKTTLNSTQRDYLHT 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E + L+ A+EK + + + Sbjct: 334 IERSANNLLSIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLN 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILRVRDTG 745 +++P + D ++QI +N+L NAI FT SG I + SN E+ +++ DTG Sbjct: 394 IQSDVPDNAIGDPLRMQQIIVNLLGNAIKFTESGNIDIRVEKRALSNNRMELEVQIHDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++ + + + F Q S R GTGLGL + + +V+ G+ S +G+ Sbjct: 454 IGISEKQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGS 510 >gi|218705748|ref|YP_002413267.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli UMN026] gi|300897715|ref|ZP_07116112.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 198-1] gi|218432845|emb|CAR13739.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli UMN026] gi|300358555|gb|EFJ74425.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 198-1] Length = 933 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 7/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 426 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 484 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 485 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 541 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + Sbjct: 542 PLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGD 599 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 600 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 659 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ + PLY +P Sbjct: 660 SEPGMGSQFTVRIPLYGAQYPQ 681 >gi|108758870|ref|YP_628999.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|58803053|gb|AAW82652.1| RodK [Myxococcus xanthus DK 1622] gi|108462750|gb|ABF87935.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 981 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 83/269 (30%), Positives = 139/269 (51%), Gaps = 20/269 (7%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSH-----------KSDFLARVSHEIRTPLTAI 603 +L M I + ++ ++L+ +A++ KS+FLA SHEIRTPL I Sbjct: 310 ALQMEIIRQQNEDLDRLAQELAVAKRNEEERAREAEAAARLKSEFLANFSHEIRTPLNGI 369 Query: 604 IGFSEVI---KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 IG+ +++ + QR G N + + +L ++ND+LD+SKIESG++ + E Sbjct: 370 IGYCDLLMREEGQRLTAHGRRDL----NVVKTNAKTLLALINDILDLSKIESGRVEVVTE 425 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 V + E E ++ V+ Y K + + T+ + + +D ++QI LN+LSNA FT Sbjct: 426 QVDVQELAEECLATVKEYLKGKDVALTTNIDPSARMLRSDALKLRQIMLNLLSNAAKFTD 485 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 + G++ +S + EVI+ V DTGVG+ + EL + F Q+ S + GTGLGL + Sbjct: 486 A-GEVALSLV-PAGSEVIMTVEDTGVGIPSDELPFIFEKFRQVDGSTTRKVGGTGLGLAI 543 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + G + ST +GT + P Sbjct: 544 VRELSRVLGGNVTVTSTLGRGTTFTVRLP 572 >gi|312973528|ref|ZP_07787700.1| sensor kinase protein rcsC [Escherichia coli 1827-70] gi|310332123|gb|EFP99358.1| sensor kinase protein rcsC [Escherichia coli 1827-70] Length = 949 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|300903600|ref|ZP_07121518.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 84-1] gi|301306550|ref|ZP_07212613.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 124-1] gi|300404336|gb|EFJ87874.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 84-1] gi|300838210|gb|EFK65970.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 124-1] gi|315255153|gb|EFU35121.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 85-1] Length = 933 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 7/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 426 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 484 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 485 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 541 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + Sbjct: 542 PLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGD 599 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 600 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 659 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ + PLY +P Sbjct: 660 SEPGMGSQFTVRIPLYGAQYPQ 681 >gi|240141277|ref|YP_002965757.1| putative PAS sensor hybrid histidine kinase [Methylobacterium extorquens AM1] gi|240011254|gb|ACS42480.1| putative PAS sensor hybrid histidine kinase [Methylobacterium extorquens AM1] Length = 698 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 98/368 (26%), Positives = 173/368 (47%), Gaps = 38/368 (10%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 ++EAT++ + + +G I + + L G KP + +P V+ +E Sbjct: 60 LVEATTEAVVQRDGQGRITFASAGFAALLGM-------KPLELIGSTLSPQVIERGASEQ 112 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIK-----KLPFSSC-----YSLTMHDISEWKQ 566 + +R EE+L+ + + + ++P S + D++ + Sbjct: 113 RADGVR----------VVEERLVPVDGLPRWFSFIEMPVSGSVDGPNWLRAGQDVTARVE 162 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 L AK AE + KS FLA VSHE+RTPL I+G ++++ + R +P Y Sbjct: 163 AARVLDEAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTRL----DPEQRTY 218 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 SG +L +V+ +LD S+IE+G+++L EP + V + L+ A +K + I Sbjct: 219 VEAFRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEI 278 Query: 687 RTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS---NEEVILRVR 742 A+++ + + D V+QI +N+ NAI FT +GG + +S + E ++L V Sbjct: 279 ALDIADDLAALRVGDADRVRQILVNLAGNAIKFTQTGG-VGVSLARSGEGQGEGLVLTVE 337 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG G+ + + F Q +S EGTGLGL + + +V+ G ST +G+ Sbjct: 338 DTGPGIPEERIPILFEEFEQGDDSAS--HEGTGLGLAITRRLVERMNGTIEARSTVGRGS 395 Query: 803 LIEIIFPL 810 ++ PL Sbjct: 396 TFRVMLPL 403 >gi|119358118|ref|YP_912762.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM 266] gi|119355467|gb|ABL66338.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM 266] Length = 1053 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 84/254 (33%), Positives = 132/254 (51%), Gaps = 9/254 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+E K+ ++L AK+ AE+ K+ FLA +SHEIRTP+ I+GFSE++K L Sbjct: 658 EDITEKKKLWSELIAAKEKAEESDRLKTAFLANISHEIRTPMNGILGFSELLKEPH---L 714 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 EY N I++SG +L ++N+L+DIS+IESG L S++ + + + + Sbjct: 715 SGEEQTEYINLINQSGQRMLHLINELVDISRIESGDTFLQITETSINRLMHDIYAFFRPE 774 Query: 679 ANEKRILIR--TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNE 735 A +K +L ++ I D V QI N++ NA+ FT G + +T N+ Sbjct: 775 AAKKGLLFECIVGLSDLFSVIDTDSSKVNQILTNLVQNALKFTTEGS---VDFRYTLKND 831 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V D+G + + EK F Q+ NS R EG GLGL ++KA ++ GK ++ Sbjct: 832 CLEFYVTDSGACIPSEMKEKIFDRFRQVDNSLTRRYEGAGLGLSISKAYIEMLGGKIWVE 891 Query: 796 STPAKGTLIEIIFP 809 S +G P Sbjct: 892 SIEGRGNRFVFTLP 905 >gi|254242634|ref|ZP_04935956.1| hypothetical protein PA2G_03393 [Pseudomonas aeruginosa 2192] gi|126196012|gb|EAZ60075.1| hypothetical protein PA2G_03393 [Pseudomonas aeruginosa 2192] Length = 1212 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 143/253 (56%), Gaps = 12/253 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DI+E +Q ++L AK +A++ S K+ FLA +SHEIRTP+ A+IG E+ +K G + Sbjct: 685 DITEHRQLIDELEEAKNLADEASRAKTTFLATMSHEIRTPMNAVIGILELALKRAETGRV 744 Query: 619 GNPRY-IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 I YA S +L+++ D+LDI++IESG+++L + +L E V + + Sbjct: 745 DRSSIEIAYA-----SAKSLLELIGDILDIARIESGRLSLSPKRANLRELVESVARVFEG 799 Query: 678 YANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTS 733 A +KR+ + ++I +L D KQI N++SNAI FT G +I S Sbjct: 800 LARQKRLSLVLEIDSSINGDVLLDAMRFKQILSNLVSNAIKFTDEGSIRIRIDGRQVEPS 859 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +V L V DTG+G++ + ++ +PF Q+ + Q EGTGLGL +++++ + G+ Sbjct: 860 LLQVNLCVEDTGIGISLGDQQQLFRPFAQVNRNLQ-NTEGTGLGLVISRSLCEMMGGRLV 918 Query: 794 IFSTPAKGTLIEI 806 + S +GT I++ Sbjct: 919 MSSELGQGTRIDV 931 >gi|296388461|ref|ZP_06877936.1| putative two-component sensor [Pseudomonas aeruginosa PAb1] Length = 741 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 137/252 (54%), Gaps = 10/252 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E ++ +L A + A++ + KS FLA +SHEIRTP+ A+IG E++ QR P Sbjct: 223 DITERERLARQLREAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILELVL-QRLAPEQ 281 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R Y + +G+L L ++ D+LD++KIESG + L E V L V + + A Sbjct: 282 RERASLEVAY-EAAGSLQL-LIGDILDVAKIESGHLTLTPERVRLRHVVESVRRMFEGLA 339 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 +K + + + R +L D KQ+ N++SNAI FT GQ+ I S +E Sbjct: 340 RQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTER-GQVTIRLQERSLDEGR 398 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 I+R V D+G+G+ + + +PF Q+ + ++G GTGLGL + + +VD G + Sbjct: 399 AIVRVDVEDSGIGIAPADQARLFQPFIQVAKGRTVQG-GTGLGLAICRKLVDLMGGDVEM 457 Query: 795 FSTPAKGTLIEI 806 S P KGT + + Sbjct: 458 HSEPGKGTRVSL 469 >gi|239905424|ref|YP_002952163.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239795288|dbj|BAH74277.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 904 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/260 (29%), Positives = 131/260 (50%), Gaps = 14/260 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E + +L AK++A+ S KS+FLA +SHE+RTP+ ++G ++++ Sbjct: 490 DITEQHHHERELRRAKEMADAGSRAKSEFLANMSHEVRTPINGVVGMLQLLETTAL---- 545 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 EY R+ + ++ D+LD+SK+ESG + L P L+E + + A Sbjct: 546 TEEQQEYVAMAGRAAGRLSRLLGDILDLSKVESGALVLQQTPFELEELRQAILDVFGPMA 605 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG--------GQIIISTT 730 K + + A +P R++ D ++QI LN++ NA+ +T SG G Sbjct: 606 RNKNLALSVDLAQALPRRVMGDDVRLRQILLNLVGNAVKYTDSGFVHVAVFPGDPDSPPR 665 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + EV+ V DTG G+ ++L+ PF Q + +G G GLGL + K +V+ G Sbjct: 666 EGAPFEVVFVVADTGRGIPGHKLDSVFSPFVQTDPAAGPQG-GVGLGLAIVKRLVELMGG 724 Query: 791 KFYIFSTPAKGTLIEIIFPL 810 + ++ S +GT + + PL Sbjct: 725 RIHLCSVEGQGTSMRAVVPL 744 >gi|218559136|ref|YP_002392049.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli S88] gi|218365905|emb|CAR03647.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli S88] gi|315285842|gb|EFU45282.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 110-3] Length = 933 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 7/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 426 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 484 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 485 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 541 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + Sbjct: 542 PLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGD 599 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 600 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 659 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ + PLY +P Sbjct: 660 SEPGMGSQFTVRIPLYGAQYPQ 681 >gi|94267479|ref|ZP_01290888.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93451988|gb|EAT02695.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 529 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/253 (30%), Positives = 129/253 (50%), Gaps = 19/253 (7%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG------PLGNPRYI 624 ++H K+I K DF++ VSHE+RTPLT+++GF+ +I + G P +PR + Sbjct: 259 ITHQKEI----ERMKDDFVSAVSHELRTPLTSVLGFARLIAKKLEGVILPVVPRQDPR-V 313 Query: 625 EYA--------NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 E A N I G + ++N++LD+SK+E+GK+ EPV+ +E V A+ Sbjct: 314 ERAVRQVGDNINIIVTEGERLTKLINEVLDLSKMEAGKVEWQLEPVTAEEIVKRALDATT 373 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 E + + +P + D + Q+ +N+++NA FT G + + E Sbjct: 374 GLFGEGAPELLSEVEPELPVLCCDRDRIMQVLINLIANARKFTDHGRVTVRARRAAGEEA 433 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V+ V D+G G+T L+ + F Q+ ++ R +GTGLGLP+ K +V+ + G S Sbjct: 434 VLFEVSDSGCGITPENLQSVFEKFKQVGDTLTDRPKGTGLGLPICKEIVEYHGGTVTAES 493 Query: 797 TPAKGTLIEIIFP 809 TP G+ P Sbjct: 494 TPGAGSTFRFTLP 506 >gi|51891870|ref|YP_074561.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] gi|51855559|dbj|BAD39717.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] Length = 584 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/236 (36%), Positives = 137/236 (58%), Gaps = 6/236 (2%) Query: 578 AEKESSHKS--DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 A+ E+ H+S +F + ++HE RTPLT+IIGFS+++ + PL P E+ I S Sbjct: 346 ADLEALHRSQTEFYSAMTHEFRTPLTSIIGFSQLLLSPGGDPL-TPGQREHLKDILESAQ 404 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L +VNDLLD S++++G+M L V L EAV EA+++V+ A ++ I + ++P Sbjct: 405 RLLQLVNDLLDASRLQAGQMPLRIAAVDLGEAVQEALAVVRPLAQQREITVTCHIPADLP 464 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 + AD V QI LN+LSNAI FT GG++ + T ++ V + VRD G G+ + E Sbjct: 465 LVAADDLRVLQILLNLLSNAIKFTQVGGEVAL-TAEARSDLVQVSVRDNGPGIPPEDHEV 523 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + F + S R G+GLGL LAK +V+ + G+ ++ S P G+ P++ Sbjct: 524 IFQLFRR--GSAHERTGGSGLGLALAKLLVELHGGRIWVESRPGCGSTFHFTLPVH 577 >gi|300936769|ref|ZP_07151662.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 21-1] gi|300458099|gb|EFK21592.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 21-1] Length = 933 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 7/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 426 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 484 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 485 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 541 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + Sbjct: 542 PLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLQVRADGD 599 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 600 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 659 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ + PLY +P Sbjct: 660 SEPGIGSQFTVRIPLYGAQYPQ 681 >gi|300918613|ref|ZP_07135201.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 115-1] gi|300414265|gb|EFJ97575.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 115-1] Length = 933 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 7/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 426 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 484 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 485 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 541 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + Sbjct: 542 PLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGD 599 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 600 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 659 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ + PLY +P Sbjct: 660 SEPGMGSQFTVRIPLYGAQYPQ 681 >gi|291085107|ref|ZP_06352077.2| sensor protein RcsC [Citrobacter youngae ATCC 29220] gi|291071984|gb|EFE10093.1| sensor protein RcsC [Citrobacter youngae ATCC 29220] Length = 928 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 83/259 (32%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 425 DVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PNG 483 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E +S + Sbjct: 484 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITANYLPLV 540 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 541 VRKQLGLYCFIDPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVQCDGDYLS 598 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 599 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 658 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 659 GMGSQFTLRIPLYGAQYPQ 677 >gi|260856206|ref|YP_003230097.1| hybrid sensory kinase RcsC in two-component regulatory system with RcsB and YojN [Escherichia coli O26:H11 str. 11368] gi|257754855|dbj|BAI26357.1| hybrid sensory kinase RcsC in two-component regulatory system with RcsB and YojN [Escherichia coli O26:H11 str. 11368] gi|323152279|gb|EFZ38569.1| sensor kinase protein rcsC [Escherichia coli EPECa14] Length = 933 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 7/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 426 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 484 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 485 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 541 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + Sbjct: 542 PLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGD 599 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 600 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 659 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ + PLY +P Sbjct: 660 SEPGMGSQFTVRIPLYGAQYPQ 681 >gi|148560078|ref|YP_001259900.1| putative sensory box histidine kinase [Brucella ovis ATCC 25840] gi|148371335|gb|ABQ61314.1| putative sensory box histidine kinase [Brucella ovis ATCC 25840] Length = 837 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 140/254 (55%), Gaps = 4/254 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT D+++ + + L + E K+DF+ VS+E+R+PLT IIGF+E+++ F Sbjct: 577 LTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAF 636 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L N R +EY ++I S +++L IVND+LD++ +++G M L VS+ EA+S A S V Sbjct: 637 GSL-NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRV 695 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + I + A+++ AD V+Q+ N+LSNA+++ P G I++ Sbjct: 696 SERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVAR-DGA 754 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +V+ V D G GM + L+ K F PN + G GLGL + K+ V+ + G+ I Sbjct: 755 DVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRR--RGAGLGLAIVKSFVELHGGRVEID 812 Query: 796 STPAKGTLIEIIFP 809 + +GT + FP Sbjct: 813 TGEERGTTVICHFP 826 >gi|147525|gb|AAA24503.1| capsule synthesis regulator component C [Escherichia coli] Length = 933 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 7/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 426 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 484 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 485 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 541 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + Sbjct: 542 PLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGD 599 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 600 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 659 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ + PLY +P Sbjct: 660 SEPGMGSQFTVRIPLYGAQYPQ 681 >gi|39997670|ref|NP_953621.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39984562|gb|AAR35948.1| sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|298506611|gb|ADI85334.1| sensor histidine kinase response regulator, Hpt domain-containing [Geobacter sulfurreducens KN400] Length = 850 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/251 (32%), Positives = 135/251 (53%), Gaps = 8/251 (3%) Query: 557 TMHDISEWKQEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 T+ + + QE+ + L+ A++ AE S KSDFLA +SHEIRTPL I+G ++++ Sbjct: 185 TLASLEQRVQERTRDLAAAREQAESASRAKSDFLANMSHEIRTPLNGIMGMTDLLLG--- 241 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L + +Y I S + ++ ++ D+LD SKIE+GK+ L P SL V +A+ + Sbjct: 242 GGLNQTQQHQYLGAIKGSADCLMGVIGDILDFSKIEAGKVELDPVPFSLRTFVGQAVRSL 301 Query: 676 QLYANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTS 733 A EK + L+ + I ++ D ++Q+ +N++ NAI F+ G + + T Sbjct: 302 SARAAEKGVELVCDPREDVIDPLIGDCGKLRQVLVNLVGNAIKFSDGGEVVVAVETAAVE 361 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 EV+LR V D G G+ L++ F Q +S R GTGLGL +++ +V G Sbjct: 362 GNEVLLRFSVSDQGCGIAPEALDRIFNVFEQADSSTTKRFGGTGLGLAISRRIVQLMGGD 421 Query: 792 FYIFSTPAKGT 802 + S P +G+ Sbjct: 422 IRVESAPGEGS 432 >gi|117919029|ref|YP_868221.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3] gi|117611361|gb|ABK46815.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3] Length = 1236 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 87/250 (34%), Positives = 131/250 (52%), Gaps = 8/250 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ K + L AK+ AE + +KS+FLA +SHEIRTP+ AIIG ++ + Sbjct: 694 THKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLT 753 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 Y+E A + S +L I+ND+LD SKIE+GK+ L P LD+ + A+ L Sbjct: 754 A-QQKDYLEKAGF---SAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNA 809 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 L A E+ + + IL D + Q+ +N+LSNA+ FT SG ++ + Sbjct: 810 LKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGEIELGCEDVGERD 869 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + L+ VRDTG+G++ + EK F Q S + GTGLGL ++K +V GK Sbjct: 870 HRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKM 929 Query: 793 YIFSTPAKGT 802 + S G+ Sbjct: 930 QVQSELGVGS 939 >gi|218554787|ref|YP_002387700.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli IAI1] gi|218695831|ref|YP_002403498.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli 55989] gi|260844821|ref|YP_003222599.1| hybrid sensory kinase RcsC in two-component regulatory system with RcsB and YojN [Escherichia coli O103:H2 str. 12009] gi|300818176|ref|ZP_07098388.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 107-1] gi|300822674|ref|ZP_07102812.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 119-7] gi|300926329|ref|ZP_07142129.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 182-1] gi|301328715|ref|ZP_07221768.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 78-1] gi|309793104|ref|ZP_07687532.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 145-7] gi|73856217|gb|AAZ88924.1| sensor for ctr capsule biosynthesis [Shigella sonnei Ss046] gi|218352563|emb|CAU98342.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli 55989] gi|218361555|emb|CAQ99146.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli IAI1] gi|257759968|dbj|BAI31465.1| hybrid sensory kinase RcsC in two-component regulatory system with RcsB and YojN [Escherichia coli O103:H2 str. 12009] gi|300417606|gb|EFK00917.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 182-1] gi|300524874|gb|EFK45943.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 119-7] gi|300529320|gb|EFK50382.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 107-1] gi|300844863|gb|EFK72623.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 78-1] gi|308123390|gb|EFO60652.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 145-7] gi|323171896|gb|EFZ57540.1| sensor kinase protein rcsC [Escherichia coli LT-68] gi|323176864|gb|EFZ62454.1| sensor kinase protein rcsC [Escherichia coli 1180] gi|324020897|gb|EGB90116.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 117-3] Length = 933 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 7/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 426 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 484 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 485 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 541 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + Sbjct: 542 PLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGD 599 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 600 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 659 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ + PLY +P Sbjct: 660 SEPGMGSQFTVRIPLYGAQYPQ 681 >gi|254713498|ref|ZP_05175309.1| histidine kinase [Brucella ceti M644/93/1] gi|254716146|ref|ZP_05177957.1| histidine kinase [Brucella ceti M13/05/1] Length = 859 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 140/254 (55%), Gaps = 4/254 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT D+++ + + L + E K+DF+ VS+E+R+PLT IIGF+E+++ F Sbjct: 599 LTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAF 658 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L N R +EY ++I S +++L IVND+LD++ +++G M L VS+ EA+S A S V Sbjct: 659 GSL-NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRV 717 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + I + A+++ AD V+Q+ N+LSNA+++ P G I++ Sbjct: 718 SERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVAR-DGA 776 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +V+ V D G GM + L+ K F PN + G GLGL + K+ V+ + G+ I Sbjct: 777 DVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRR--RGAGLGLAIVKSFVELHGGRVEID 834 Query: 796 STPAKGTLIEIIFP 809 + +GT + FP Sbjct: 835 TGEERGTTVICRFP 848 >gi|237747982|ref|ZP_04578462.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] gi|229379344|gb|EEO29435.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] Length = 762 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/264 (32%), Positives = 138/264 (52%), Gaps = 11/264 (4%) Query: 554 YSLTMHDISEWK-QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 Y L + E++ Q + L A + A+ ++ KS FL +SH+IRTP+ AIIG + + Sbjct: 211 YLLILKRKEEYEAQMRQILRQALESAQTANAAKSQFLFNMSHDIRTPMNAIIGMTTL--- 267 Query: 613 QRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 L P+ I +Y I S +L+++ND+LD+SKIE+GK+ L+ E L E + Sbjct: 268 -ALIHLNEPQKIRDYLVKISSSSKHLLELINDVLDMSKIENGKIALNDEEFVLPELIEHF 326 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-- 729 +++ A+ + + + + ++ D + Q+ LNI NA+ FTP+GG+I I Sbjct: 327 CTIILQQAHTRHLTLDINTDLIHEKVTGDTLRINQMLLNIAGNALKFTPAGGKIDIQIRE 386 Query: 730 ---THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + + DTG+GM +EK +PF + NS + EGTGLG+ + K +VD Sbjct: 387 LPPQYAGYGTYQFIISDTGIGMPADFIEKIFEPFERAHNSIGNKIEGTGLGMAITKNIVD 446 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPL 810 G+ + S P KGT + PL Sbjct: 447 MMNGRIDVESEPGKGTTFTVTVPL 470 >gi|215487437|ref|YP_002329868.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O127:H6 str. E2348/69] gi|300983211|ref|ZP_07176488.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 45-1] gi|301048966|ref|ZP_07195955.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 185-1] gi|215265509|emb|CAS09911.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O127:H6 str. E2348/69] gi|222033980|emb|CAP76721.1| Sensor kinase protein rcsC [Escherichia coli LF82] gi|281179310|dbj|BAI55640.1| two-component sensor kinase [Escherichia coli SE15] gi|300299217|gb|EFJ55602.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 185-1] gi|300408612|gb|EFJ92150.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 45-1] gi|312946840|gb|ADR27667.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O83:H1 str. NRG 857C] gi|315292174|gb|EFU51526.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 153-1] gi|315298048|gb|EFU57317.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 16-3] gi|330912049|gb|EGH40559.1| two-component sensor protein RcsC [Escherichia coli AA86] Length = 933 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 7/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 426 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 484 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 485 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 541 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + Sbjct: 542 PLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGD 599 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 600 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 659 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ + PLY +P Sbjct: 660 SEPGMGSQFTVRIPLYGAQYPQ 681 >gi|152995118|ref|YP_001339953.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150836042|gb|ABR70018.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 1121 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/261 (30%), Positives = 133/261 (50%), Gaps = 6/261 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS+ + +++L AK AE K+ FLA +SHEIRTP+ AIIGFS+++ G Sbjct: 515 DISQRVEMEDELRQAKAKAEASVESKASFLANMSHEIRTPMNAIIGFSDILLESEIS--G 572 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + ++ + I +S +L ++ND+LD +K+E K+ L +P L +V IS + L A Sbjct: 573 ENK--KHLSIISKSARSLLHLLNDILDSAKLEKNKLELDIQPFVLANSVDTVISTLWLQA 630 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K + + + ++ L ++Q+ +NIL NA+ FT G + ++ + ++ Sbjct: 631 RNKGLELNFNIEKDVAVAYLGAEDRIRQVLMNILGNAVKFTEK-GHVTLNVLKLQDGKIR 689 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V D+G+G+ L PF Q S R GTGLG ++K +V G+ ++ S Sbjct: 690 FSVTDSGIGIPEERLTHIFDPFTQADASMSRRFGGTGLGTSISKQLVTLMGGQIHVTSEA 749 Query: 799 AKGTLIEIIFPLYDTSHPHDC 819 G+ PL +T P D Sbjct: 750 EVGSCFFFDLPLTETEAPSDT 770 Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 9/107 (8%) Query: 433 IEPEDVDTRINKRKMEIEV----MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 I ++ +++ R++ +E ++L + L+ DGI I+ GII N+A +K+FG+ Sbjct: 249 ILAANIASQLRYRQLLLEKTASEVRLKTTLDTAVDGIISIDSLGIIKEFNKAATKIFGWQ 308 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 E+I+ + F Q N L R T E G+ +E Sbjct: 309 EEEIINQHFGALFPQKYTDEFNRSLAA-----FRNTGEVTIAGTERE 350 >gi|323190649|gb|EFZ75919.1| TMAO reductase sytem sensor TorS [Escherichia coli RN587/1] Length = 900 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 133/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TEIADDVPTALMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRIATAP 658 >gi|320196519|gb|EFW71142.1| Sensor protein torS [Escherichia coli WV_060327] Length = 900 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 133/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TEIADDVPTALMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRIATAP 658 >gi|316935268|ref|YP_004110250.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris DX-1] gi|315602982|gb|ADU45517.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris DX-1] Length = 1157 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 102/378 (26%), Positives = 191/378 (50%), Gaps = 27/378 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLT 514 +ILE + + + G I N A ++ GY ED++ R +F + + + L Sbjct: 508 AILERAAYAVIATDVTGTITLFNPAAERMLGYAAEDLIGRATAMLFHDPDELAARADALR 567 Query: 515 E----------ILSLDLRQTLEKITLGS--TKEEKLLSLRIIIKKLPFSSCYSLTMH--- 559 + +L L ++ + + E + +R+ + +L L + Sbjct: 568 QEGVDVGSNLGVLRARLARSDPDTAVWTYINAEGGRIPVRLTLSRLRTKDGTDLGVLGIA 627 Query: 560 -DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++E + +N+L A+ AEK + K++FLA +SHEIRTPL IIG+++++ + L Sbjct: 628 VDLTEQLKYENELKAARASAEKAGAAKANFLANMSHEIRTPLNGIIGYADLVLEDQTLAL 687 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 R + + S +L + I++D+LD SKIE+ + L +P+ +++ + +S++Q Sbjct: 688 DTRRQV--IRIFEASDSLRV-IIDDILDFSKIEALGVTLESKPLYVEQLIDNCMSIIQRK 744 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE 736 A +K + +R A IP +L D ++Q+ LN+L+NA+ FT +G ++ ++ + Sbjct: 745 AEKKGLELRVD-AQEIPAVLMGDGARLRQVLLNLLNNAVKFTDAGSVELNVACLSRVGDR 803 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 LR V DTG+G++ + + K F Q + + GTGLGL +++ +V A G+ I Sbjct: 804 ARLRITVTDTGIGISAQDQKGLFKRFSQADETISRKYGGTGLGLAISQRIVQAMGGEIGI 863 Query: 795 FSTPAKGT--LIEIIFPL 810 S P +G+ EI P+ Sbjct: 864 DSAPGRGSTFYFEIELPI 881 >gi|227884054|ref|ZP_04001859.1| hybrid sensory histidine kinase TorS [Escherichia coli 83972] gi|300978247|ref|ZP_07174195.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 45-1] gi|301047751|ref|ZP_07194807.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 185-1] gi|227838806|gb|EEJ49272.1| hybrid sensory histidine kinase TorS [Escherichia coli 83972] gi|300300360|gb|EFJ56745.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 185-1] gi|300409712|gb|EFJ93250.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 45-1] gi|315291163|gb|EFU50526.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 153-1] Length = 900 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 133/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TEIADDVPTALMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRIATAP 658 >gi|23502947|ref|NP_699074.1| sensory box histidine kinase [Brucella suis 1330] gi|161620011|ref|YP_001593898.1| histidine kinase [Brucella canis ATCC 23365] gi|225853527|ref|YP_002733760.1| histidine kinase [Brucella melitensis ATCC 23457] gi|254700729|ref|ZP_05162557.1| histidine kinase [Brucella suis bv. 5 str. 513] gi|254705101|ref|ZP_05166929.1| histidine kinase [Brucella suis bv. 3 str. 686] gi|254707383|ref|ZP_05169211.1| histidine kinase [Brucella pinnipedialis M163/99/10] gi|254709075|ref|ZP_05170886.1| histidine kinase [Brucella pinnipedialis B2/94] gi|256030600|ref|ZP_05444214.1| histidine kinase [Brucella pinnipedialis M292/94/1] gi|256045702|ref|ZP_05448580.1| histidine kinase [Brucella melitensis bv. 1 str. Rev.1] gi|256112422|ref|ZP_05453343.1| histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|256158596|ref|ZP_05456486.1| histidine kinase [Brucella ceti M490/95/1] gi|256254007|ref|ZP_05459543.1| histidine kinase [Brucella ceti B1/94] gi|256262989|ref|ZP_05465521.1| histidine kinase [Brucella melitensis bv. 2 str. 63/9] gi|256370497|ref|YP_003108008.1| sensory box histidine kinase, putative [Brucella microti CCM 4915] gi|260169506|ref|ZP_05756317.1| sensory box histidine kinase, putative [Brucella sp. F5/99] gi|260563004|ref|ZP_05833490.1| histidine kinase [Brucella melitensis bv. 1 str. 16M] gi|260567429|ref|ZP_05837899.1| histidine kinase [Brucella suis bv. 4 str. 40] gi|261759034|ref|ZP_06002743.1| histidine kinase [Brucella sp. F5/99] gi|23348982|gb|AAN30989.1| sensory box histidine kinase, putative [Brucella suis 1330] gi|161336822|gb|ABX63127.1| histidine kinase [Brucella canis ATCC 23365] gi|225641892|gb|ACO01806.1| histidine kinase [Brucella melitensis ATCC 23457] gi|256000660|gb|ACU49059.1| sensory box histidine kinase, putative [Brucella microti CCM 4915] gi|260153020|gb|EEW88112.1| histidine kinase [Brucella melitensis bv. 1 str. 16M] gi|260156947|gb|EEW92027.1| histidine kinase [Brucella suis bv. 4 str. 40] gi|261739018|gb|EEY27014.1| histidine kinase [Brucella sp. F5/99] gi|263092862|gb|EEZ17037.1| histidine kinase [Brucella melitensis bv. 2 str. 63/9] Length = 859 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 140/254 (55%), Gaps = 4/254 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT D+++ + + L + E K+DF+ VS+E+R+PLT IIGF+E+++ F Sbjct: 599 LTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAF 658 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L N R +EY ++I S +++L IVND+LD++ +++G M L VS+ EA+S A S V Sbjct: 659 GSL-NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRV 717 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + I + A+++ AD V+Q+ N+LSNA+++ P G I++ Sbjct: 718 SERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVAR-DGA 776 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +V+ V D G GM + L+ K F PN + G GLGL + K+ V+ + G+ I Sbjct: 777 DVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRR--RGAGLGLAIVKSFVELHGGRVEID 834 Query: 796 STPAKGTLIEIIFP 809 + +GT + FP Sbjct: 835 TGEERGTTVICRFP 848 >gi|332756179|gb|EGJ86530.1| sensor kinase protein rcsC [Shigella flexneri 2747-71] Length = 949 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|218889772|ref|YP_002438636.1| putative two-component sensor [Pseudomonas aeruginosa LESB58] gi|218769995|emb|CAW25757.1| probable two-component sensor [Pseudomonas aeruginosa LESB58] Length = 1212 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 143/253 (56%), Gaps = 12/253 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DI+E +Q ++L AK +A++ S K+ FLA +SHEIRTP+ A+IG E+ +K G + Sbjct: 685 DITEHRQLIDELEEAKNLADEASRAKTTFLATMSHEIRTPMNAVIGILELALKRAETGRV 744 Query: 619 GNPRY-IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 I YA S +L+++ D+LDI++IESG+++L + +L E V + + Sbjct: 745 DRSSIEIAYA-----SAKSLLELIGDILDIARIESGRLSLSPKRANLRELVESVARVFEG 799 Query: 678 YANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTS 733 A +KR+ + ++I +L D KQI N++SNAI FT G +I S Sbjct: 800 LARQKRLSLVLEIDSSINGDVLLDAMRFKQILSNLVSNAIKFTDEGSIRIRIDGRQVEPS 859 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +V L V DTG+G++ + ++ +PF Q+ + Q EGTGLGL +++++ + G+ Sbjct: 860 LLQVNLCVEDTGIGISLGDQQQLFRPFAQVNRNLQ-NTEGTGLGLVISRSLCEMMGGRLV 918 Query: 794 IFSTPAKGTLIEI 806 + S +GT I++ Sbjct: 919 MSSELGQGTRIDV 931 >gi|149192072|ref|ZP_01870297.1| hybrid sensory histidine kinase BarA [Vibrio shilonii AK1] gi|148834097|gb|EDL51109.1| hybrid sensory histidine kinase BarA [Vibrio shilonii AK1] Length = 939 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 139/253 (54%), Gaps = 12/253 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQ-TDYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L+I+ND+LD SK+E+GK+ L P +++ E ++L A+EK + + Sbjct: 331 TIEKSANNLLNIINDILDFSKLEAGKLALENIPFEFQDSLEEVVALQATSAHEKGLELTL 390 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRD 743 + IP ++ D ++QI N++ N+I FT G I IS S + E+ VRD Sbjct: 391 KVDSKIPSGLVGDPLRIQQILTNLVGNSIKFTERGN-IDISVELKSQKEDRVELQFMVRD 449 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 450 TGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVGQMGGEISLTSRLHQGST 509 Query: 804 IEIIFPLYDTSHP 816 L T P Sbjct: 510 FWFTVKLNSTDIP 522 >gi|75674318|ref|YP_316739.1| Signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] gi|74419188|gb|ABA03387.1| signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] Length = 754 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 97/358 (27%), Positives = 167/358 (46%), Gaps = 18/358 (5%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 + E+ SD I + + G+I S N A L ++L F + + + S + T + Sbjct: 114 LFESQSDLIVLRDGGGVITSVNEAYCILAQRSRTELLGSRFALPVLEQGESAIESNGTRV 173 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHA 574 Q +E + + + ++ R + ++ L D+++ + L+ A Sbjct: 174 YD----QRVE-----TARGPRWIAWREALMRIDADHPAELQCVGRDVTDRTDSERALAEA 224 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 + A + S KS FLA SHE RTPL IIG S ++ P Y + SG Sbjct: 225 RDRANEASQAKSRFLAMTSHEFRTPLNGIIGMSGLLLETLL----TPEQTTYVKAVKASG 280 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 + +L ++ DLLD S+IE+GK+ L P L + + + L+ A +++ I + + Sbjct: 281 DALLSLIEDLLDYSRIEAGKVELECRPFVLSDLIEDITELLAPRAQARQLEIASYVDETL 340 Query: 695 P-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 P ++ D ++Q+ LN+ NAI FT SGG +I ++ VRDTG+G+ Sbjct: 341 PAEVIGDAARLRQVLLNLAGNAIKFTSSGGVALIVVPGIRPGDIRFMVRDTGIGIAPDAQ 400 Query: 754 EKAMKPFGQIPNSQQIRG-EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + F Q + Q IR G+GLGL ++ +V G+ + S P G+ E++ PL Sbjct: 401 ARIFREFEQ-ADDQIIRSYGGSGLGLSISDRIVKRMGGRITLQSKPDSGSTFEVLVPL 457 >gi|312142591|ref|YP_003994037.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium sp. 'sapolanicus'] gi|311903242|gb|ADQ13683.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium sp. 'sapolanicus'] Length = 1186 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/249 (32%), Positives = 134/249 (53%), Gaps = 12/249 (4%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AEK + KS FLA +SHEIRTPL I+G++E++ L Y Y I +G+ + Sbjct: 807 AEKANELKSQFLANMSHEIRTPLNIIMGYTELLAK----DLEEDNYKRYIKSIRSAGDSL 862 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 LD VND+LD+SKIE+G + +++E + L + ++ K + + N P + Sbjct: 863 LDQVNDILDMSKIEAGIIEINYEYIDLAALLENITAIFADKVKAKGLDFQLKMDNLPPLV 922 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQII------ISTTHTSNEEVILRVRDTGVGMTNY 751 D +QI +N+L NA+ FT SG I +S +N ++ + V+DTG+G+ Sbjct: 923 KMDEFRFRQIMINLLDNAVKFTKSGHIFIGVYCRPVSGKGNNNIKLRIIVQDTGIGIKAE 982 Query: 752 ELEKAMKPFGQIPNSQQIRG-EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + E+ K F Q N++ R GTGLGL + + +VD G+ + ST KG++ +I F Sbjct: 983 KQEEIFKAFSQ-ENAESTREFGGTGLGLSITRRLVDMMDGQISLQSTAGKGSVFKIEFSS 1041 Query: 811 YDTSHPHDC 819 +++ ++ Sbjct: 1042 LESASGNEI 1050 >gi|325108197|ref|YP_004269265.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324968465|gb|ADY59243.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 1434 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 87/286 (30%), Positives = 148/286 (51%), Gaps = 17/286 (5%) Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 L + +I C+ L D + K+ + L A++ AE S KSDFLA +SHE+RT Sbjct: 673 LGVTLIEDNTDLCLCFVL---DATAQKRTEASLEGARRSAEAASKAKSDFLASMSHELRT 729 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL- 657 PL +IG +E++ N + R ++ SG +L ++ND+LD SKIE+G++ L Sbjct: 730 PLNGVIGMTELLANTDL----DARQTQFVRACKSSGESLLALINDVLDFSKIEAGRLELD 785 Query: 658 --HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 F+ +SL + + + L ++ + ++L R + + + D ++Q+ +N++ NA Sbjct: 786 EHEFDLMSLLDDLMNVMGL-RVSGKDIQMLYRVDHPHTL-LLRGDSHRLRQVLVNLIGNA 843 Query: 716 IHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 I FT G + + + + LR V+DTG+G+ L++ K F Q+ +S Sbjct: 844 IKFTERGKISLRVEPLELTEDRAKLRFAVKDTGIGIPADRLDRLFKTFTQVDSSITRTFG 903 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 GTGLGL + K++V+A G+ + S G+ E F L T P D Sbjct: 904 GTGLGLCICKSLVEAMGGEMGVDSIQGVGS--EFYFTLELTRVPAD 947 >gi|218690381|ref|YP_002398593.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli ED1a] gi|300981269|ref|ZP_07175446.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 200-1] gi|218427945|emb|CAR08865.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli ED1a] gi|300307633|gb|EFJ62153.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 200-1] gi|324006600|gb|EGB75819.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 57-2] gi|324013107|gb|EGB82326.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 60-1] Length = 933 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 7/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 426 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 484 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 485 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 541 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + Sbjct: 542 PLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGD 599 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 600 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 659 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ + PLY +P Sbjct: 660 SEPGMGSQFTVRIPLYGAQYPQ 681 >gi|147528|gb|AAA24505.1| capsular sunthesis regulator component C [Escherichia coli] Length = 933 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 7/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 426 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 484 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 485 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 541 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + Sbjct: 542 PLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGD 599 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 600 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 659 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ + PLY +P Sbjct: 660 SEPGMGSQFTVRIPLYGAQYPQ 681 >gi|215486110|ref|YP_002328541.1| hybrid sensory histidine kinase TorS [Escherichia coli O127:H6 str. E2348/69] gi|215264182|emb|CAS08526.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli O127:H6 str. E2348/69] Length = 910 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 133/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK + KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 432 QARAEAEKANQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 487 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 488 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 544 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 545 TEIADDVPTALMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRTDGEQWLVEVEDSGC 602 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L K +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 603 GIDPAKLAKIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 658 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 659 RLPLRIATAP 668 >gi|209522685|ref|ZP_03271243.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209496734|gb|EDZ97031.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1263 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 92/270 (34%), Positives = 151/270 (55%), Gaps = 36/270 (13%) Query: 565 KQEKNKLSHAKKIAEKESSH--------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 KQ++ KL+ + IA +E+ KS FLA +SHE+RTPL AI+GFS+++ + Sbjct: 773 KQQRLKLA-TQNIALEEARRAADAANRAKSTFLANMSHELRTPLNAILGFSQLMSD---- 827 Query: 617 PLGNPRYIEYAN---YIDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSE 670 NP + E + I+RSG +L+++ND+LD+SKIE+GK+ L HF+ L E + E Sbjct: 828 ---NPIFAEGSQELAIINRSGEHLLELINDILDLSKIEAGKITLEMNHFDLHRLLETLEE 884 Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 + +L A K I++ + ++PR +L D + ++Q+ +N+L+NAI FT +G + + Sbjct: 885 ---MFKLKAAHKDIVLNINRPLDLPRYLLGDEKKLRQVLINLLANAIKFTTAGEVTLYTK 941 Query: 730 T-------HTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 T HT + V+++ V DTG G++ E++ F Q + + EGTGLGLP+ Sbjct: 942 TLPTPKEAHTDSNTVLMQFIVEDTGPGISPQEIDALFDAFVQT-ETGKYSQEGTGLGLPI 1000 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 ++ V G + ST G+ PL Sbjct: 1001 SRKFVQLMGGDITVDSTMGVGSKFIFEIPL 1030 >gi|158339052|ref|YP_001520229.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] gi|158309293|gb|ABW30910.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] Length = 1564 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 134/254 (52%), Gaps = 26/254 (10%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A+K A+ + KS+FLA +SHEIRTP+ A+IG + ++ N + + ++ I Sbjct: 1016 LKQARKDADAANVAKSEFLATMSHEIRTPMNAVIGMTGLLLNTTL----DNQQRDFVETI 1071 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG+ +L ++ND+LD SKIE+GK+ +P SL + E++ LV A +K++ + F Sbjct: 1072 RSSGDALLTLINDILDFSKIEAGKLEFEEQPFSLRACIEESLRLVAPRAIDKQLELAYLF 1131 Query: 691 ANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII----ISTTHTSNEE--------- 736 + P I+ D+ ++QI +N+L+N + FT G +I I+ T + E Sbjct: 1132 DPSTPNHIVGDVTRLRQILVNLLTNGVKFTEQGEVVIYVQDITDTDITQPETTSQRKNFT 1191 Query: 737 --------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + VRD+G+G+ +++ K F Q+ S + GTGLGL + +++ Sbjct: 1192 DIQNQRRLIQFEVRDSGIGIPADRMDRLFKSFSQVDASTTKKYGGTGLGLAICRSLSQMM 1251 Query: 789 MGKFYIFSTPAKGT 802 G+ ++ S G+ Sbjct: 1252 GGRIWVESKAGVGS 1265 >gi|53721153|ref|YP_110138.1| histidine kinase/response regulator fusion protein [Burkholderia pseudomallei K96243] gi|52211567|emb|CAH37562.1| putative histidine kinase/response regulator fusion protein [Burkholderia pseudomallei K96243] Length = 1014 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 87/264 (32%), Positives = 133/264 (50%), Gaps = 10/264 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DIS K+ + KL A+ A++ + KS FLA +SHEIRTPL AIIG E+++ Sbjct: 505 TLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRS--- 561 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + E + ++ N +L I+ND+LD+SK+ESG+M L P + + E + Sbjct: 562 PLSEQQS-ERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYA 620 Query: 677 LYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIII----STTH 731 A K + + +S + R A D ++Q+ N++ NAI FT G I I + Sbjct: 621 PLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAA 679 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + V DTG+G+ + + Q S R G+GLGLPL + +V G Sbjct: 680 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 739 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSH 815 I S P GT + + PL + H Sbjct: 740 IEIDSLPDFGTTVTVALPLREARH 763 >gi|30063657|ref|NP_837828.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella flexneri 2a str. 2457T] gi|30041910|gb|AAP17637.1| sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsB [Shigella flexneri 2a str. 2457T] gi|281601668|gb|ADA74652.1| Integral membrane sensor hybrid histidine kinase precursor [Shigella flexneri 2002017] gi|313651334|gb|EFS15732.1| sensor kinase protein rcsC [Shigella flexneri 2a str. 2457T] gi|333016630|gb|EGK35959.1| sensor kinase protein rcsC [Shigella flexneri K-304] Length = 949 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|315296277|gb|EFU55583.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 16-3] Length = 900 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 133/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TEIADDVPTALMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|313109380|ref|ZP_07795342.1| putative two-component sensor [Pseudomonas aeruginosa 39016] gi|310881844|gb|EFQ40438.1| putative two-component sensor [Pseudomonas aeruginosa 39016] Length = 1212 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 143/253 (56%), Gaps = 12/253 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DI+E +Q ++L AK +A++ S K+ FLA +SHEIRTP+ A+IG E+ +K G + Sbjct: 685 DITEHRQLIDELEEAKNLADEASRAKTTFLATMSHEIRTPMNAVIGILELALKRAETGRV 744 Query: 619 GNPRY-IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 I YA S +L+++ D+LDI++IESG+++L + +L E V + + Sbjct: 745 DRSSIEIAYA-----SAKSLLELIGDILDIARIESGRLSLSPKRANLRELVESVARVFEG 799 Query: 678 YANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTS 733 A +KR+ + ++I +L D KQI N++SNAI FT G +I S Sbjct: 800 LARQKRLSLVLEIDSSINGDVLLDAMRFKQILSNLVSNAIKFTDEGSIRIRIDGRQVEPS 859 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +V L V DTG+G++ + ++ +PF Q+ + Q EGTGLGL +++++ + G+ Sbjct: 860 LLQVNLCVEDTGIGISLGDQQQLFRPFAQVNRNLQ-NTEGTGLGLVISRSLCEMMGGRLV 918 Query: 794 IFSTPAKGTLIEI 806 + S +GT I++ Sbjct: 919 MSSELGQGTRIDV 931 >gi|218700687|ref|YP_002408316.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli IAI39] gi|218370673|emb|CAR18482.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli IAI39] Length = 933 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 7/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 426 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 484 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 485 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 541 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + Sbjct: 542 PLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGD 599 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 600 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 659 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ + PLY +P Sbjct: 660 SEPGMGSQFTVRIPLYGAQYPQ 681 >gi|218700495|ref|YP_002408124.1| hybrid sensory histidine kinase TorS [Escherichia coli IAI39] gi|218370481|emb|CAR18288.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli IAI39] Length = 914 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 137/250 (54%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 432 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNTQRDDLRAITD- 487 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 488 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIHLA 544 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT GQI++ + T E+ ++ V D+G Sbjct: 545 TAIADDVPTALMGDPRRIRQVITNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGC 602 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ + RG GTGLGL ++ + A G+ STP G+ + Sbjct: 603 GIDPAKLAEIFQPFVQVSSK---RG-GTGLGLTISSRLAQAMDGELSATSTPEVGSCFCL 658 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 659 RLPLRVATAP 668 >gi|332096152|gb|EGJ01155.1| sensor kinase protein rcsC [Shigella dysenteriae 155-74] Length = 933 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 7/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 426 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 484 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 485 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 541 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + Sbjct: 542 PLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGD 599 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 600 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 659 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ + PLY +P Sbjct: 660 SEPGMGSQFTVRIPLYGAQYPQ 681 >gi|324009916|gb|EGB79135.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 57-2] Length = 900 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 133/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TEIADDVPTALMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|242278764|ref|YP_002990893.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242121658|gb|ACS79354.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 822 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 138/250 (55%), Gaps = 10/250 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I+E K+ + +L A+ AEK + KS FLA +SHEIRTPL AIIG +++ Sbjct: 298 EITERKEMERELITARDAAEKANRFKSRFLASMSHEIRTPLNAIIGLTDLTLRSEL---- 353 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + E + S + +L ++ND+LD+SK+E+ + L SL EA+ + + ++ A Sbjct: 354 STKQAEDLELVKISADQLLTLINDILDLSKVEARMLTLEESDFSLSEAMRDVVRSMEQQA 413 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII----ISTTHTSN 734 +K + + +++P + D +KQI N++ N+I FT +GG + + S+ Sbjct: 414 RDKGLALNIEVDDDVPEAVCGDQVRLKQILYNLIGNSIKFTENGGVFVQVSKLEDRKDSD 473 Query: 735 EEVIL-RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E VIL VRDTG+G+ + + + F Q +S + GTGLGL +++ +V+ G+ Sbjct: 474 EAVILVSVRDTGIGIPDEKQNIVFESFRQADDSTTRKFGGTGLGLAISRELVEMMGGRIG 533 Query: 794 IFSTPAKGTL 803 + S+ G++ Sbjct: 534 VKSSEGFGSV 543 >gi|187731557|ref|YP_001879435.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella boydii CDC 3083-94] gi|187428549|gb|ACD07823.1| sensor histidine kinase/response regulator RcsC [Shigella boydii CDC 3083-94] Length = 949 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|170720805|ref|YP_001748493.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida W619] gi|169758808|gb|ACA72124.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida W619] Length = 1201 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 91/259 (35%), Positives = 139/259 (53%), Gaps = 14/259 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DISE ++ +L AK++A+ + KS FLA +SHEIRTP+ A+IG E+ +K G + Sbjct: 686 DISERRKLVQELREAKQLADDANRAKSTFLATISHEIRTPMNAVIGMLELAVKRAHQGQI 745 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + +E A++ S +L ++ D+LDI +IESG ++L EPV L V + Sbjct: 746 -DRTSLEVAHH---SAKDLLGLIGDILDIVRIESGHLSLAPEPVDLAALVESVSRVFDGQ 801 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST-----THT 732 A +K + A + +L D KQI N++SNAI FT GQ+ IS + Sbjct: 802 ARQKGLAFDVVIAPSARCHVLLDPLRFKQILSNLISNAIKFT-GQGQVRISLCLREEAPS 860 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + L VRDTG+G+ + +L++ PF Q P+SQ R GTGLGL + +++ + Sbjct: 861 APPSLELEVRDTGIGIHDDDLQRLFNPFVQANPHSQGARA-GTGLGLAICRSLCEMMGAS 919 Query: 792 FYIFSTPAKGTLIEIIFPL 810 I S P GT + PL Sbjct: 920 LSIKSVPDFGTQVRFSVPL 938 >gi|15599141|ref|NP_252635.1| two-component sensor [Pseudomonas aeruginosa PAO1] gi|9950133|gb|AAG07333.1|AE004812_8 probable two-component sensor [Pseudomonas aeruginosa PAO1] Length = 1212 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 143/253 (56%), Gaps = 12/253 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DI+E +Q ++L AK +A++ S K+ FLA +SHEIRTP+ A+IG E+ +K G + Sbjct: 685 DITEHRQLIDELEEAKNLADEASRAKTTFLATMSHEIRTPMNAVIGILELALKRAETGRV 744 Query: 619 GNPRY-IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 I YA S +L+++ D+LDI++IESG+++L + +L E V + + Sbjct: 745 DRSSIEIAYA-----SAKSLLELIGDILDIARIESGRLSLSPKRANLRELVESVARVFEG 799 Query: 678 YANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTS 733 A +KR+ + ++I +L D KQI N++SNAI FT G +I S Sbjct: 800 LARQKRLSLVLEIDSSINGDVLLDAMRFKQILSNLVSNAIKFTDEGSIRIRIDGRQVEPS 859 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +V L V DTG+G++ + ++ +PF Q+ + Q EGTGLGL +++++ + G+ Sbjct: 860 LLQVNLCVEDTGIGISLGDQQQLFRPFAQVNRNLQ-NTEGTGLGLVISRSLCEMMGGRLV 918 Query: 794 IFSTPAKGTLIEI 806 + S +GT I++ Sbjct: 919 MSSELGQGTRIDV 931 >gi|163942321|ref|YP_001647205.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] gi|163864518|gb|ABY45577.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] Length = 587 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 102/376 (27%), Positives = 184/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ +L++ Sbjct: 240 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEE--------YLDRLYYE 291 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 +H TEI+ L +E+I + K K + L + I++ F Sbjct: 292 SFHH--TEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 344 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 345 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 388 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + E + + Sbjct: 389 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKELLEDIHM 447 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + + ++ D +KQI +N+++NAI +TP+GG + + Sbjct: 448 VLDNKAGEKEISLQVNALKRVS-VIGDPGRLKQIFINLINNAIVYTPAGGVVSVELAEDK 506 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 507 YNAYI-KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTIT 565 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 566 VDSEVGEGTTFTVVLP 581 >gi|254236839|ref|ZP_04930162.1| hypothetical protein PACG_02859 [Pseudomonas aeruginosa C3719] gi|126168770|gb|EAZ54281.1| hypothetical protein PACG_02859 [Pseudomonas aeruginosa C3719] Length = 1212 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 143/253 (56%), Gaps = 12/253 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DI+E +Q ++L AK +A++ S K+ FLA +SHEIRTP+ A+IG E+ +K G + Sbjct: 685 DITEHRQLIDELEEAKNLADEASRAKTTFLATMSHEIRTPMNAVIGILELALKRAETGRV 744 Query: 619 GNPRY-IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 I YA S +L+++ D+LDI++IESG+++L + +L E V + + Sbjct: 745 DRSSIEIAYA-----SAKSLLELIGDILDIARIESGRLSLSPKRANLRELVESVARVFEG 799 Query: 678 YANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTS 733 A +KR+ + ++I +L D KQI N++SNAI FT G +I S Sbjct: 800 LARQKRLSLVLEIDSSINGDVLLDAMRFKQILSNLVSNAIKFTDEGSIRIRIDGRQVEPS 859 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +V L V DTG+G++ + ++ +PF Q+ + Q EGTGLGL +++++ + G+ Sbjct: 860 LLQVNLCVEDTGIGISLGDQQQLFRPFAQVNRNLQ-NTEGTGLGLVISRSLCEMMGGRLV 918 Query: 794 IFSTPAKGTLIEI 806 + S +GT I++ Sbjct: 919 MSSELGQGTRIDV 931 >gi|284035955|ref|YP_003385885.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283815248|gb|ADB37086.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 1201 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 129/234 (55%), Gaps = 3/234 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E + +KS+FLA +SHE+RTPL +I+ S ++ L P +EYA I SGN +L Sbjct: 524 ELTTRYKSEFLANMSHELRTPLNSILLLSRLLAENNEATL-TPDQVEYARVIQSSGNGLL 582 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++++LD+SKIE+G+M L ++ +S+ E E SL L A EK + + ++P ++ Sbjct: 583 GLIDEILDLSKIEAGQMKLDYQDMSIAEITDELQSLFGLVAKEKGLDFAITVKPDVPTVI 642 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 D + QI N+LSNAI FT SG + I + ++ + V+DTG+G+ + Sbjct: 643 ETDRMRLGQILKNLLSNAIKFTSSGQVSLRIERSTSAASTLCFVVKDTGIGIPPEKQPLV 702 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F Q S + + GTGLGL +++ + G+ + S G+ I+ PL Sbjct: 703 FEAFQQADGSTKRKYGGTGLGLSISRELAKLLGGEITLSSEVNVGSEFTILLPL 756 >gi|157154824|ref|YP_001463571.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli E24377A] gi|157076854|gb|ABV16562.1| sensor histidine kinase/response regulator RcsC [Escherichia coli E24377A] Length = 949 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 133/259 (51%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L +D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNSDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|331653653|ref|ZP_08354654.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli M718] gi|331048502|gb|EGI20578.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli M718] Length = 949 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|153832942|ref|ZP_01985609.1| conserved hypothetical protein [Vibrio harveyi HY01] gi|148870865|gb|EDL69764.1| conserved hypothetical protein [Vibrio harveyi HY01] Length = 878 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/251 (34%), Positives = 131/251 (52%), Gaps = 11/251 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + E ++ ++ K+ A + KS FLA +SHEIRTPL IIG +E++ + Sbjct: 355 MEEQNRQTEEILQTKESAISANRAKSVFLASMSHEIRTPLNGIIGMTEILSQSDL----S 410 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 E + ID S + +L ++ND+LD+SKIESG + L + E V +++ L Q A Sbjct: 411 DHQKEVLSDIDTSSHTLLTLLNDILDLSKIESGHLQLSLIETDIREVVYQSVILFQSKAT 470 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEE 736 KR+ + + IP RI D +KQI +N++SNA+ FT G I I + T+ + Sbjct: 471 SKRLELNINLDERIPARIKVDDHRIKQIIMNLVSNAVKFTEQGS-INIDVNYQESTTQKS 529 Query: 737 VIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V L RV DTGVG+ +L+ +PF Q + GTGLGL + + +V G+ Sbjct: 530 VFLTFRVSDTGVGIEQDKLDTIFEPFTQEDEGISRQFGGTGLGLAICRQLVAMMGGQLTA 589 Query: 795 FSTPAKGTLIE 805 S+ GT E Sbjct: 590 SSSKGIGTSFE 600 >gi|78223629|ref|YP_385376.1| Hpt sensor hybrid histidine kinase [Geobacter metallireducens GS-15] gi|78194884|gb|ABB32651.1| Hpt sensor hybrid histidine kinase [Geobacter metallireducens GS-15] Length = 827 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 87/303 (28%), Positives = 153/303 (50%), Gaps = 17/303 (5%) Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN-KLSHAKKIA 578 D R E+I LG +E L+ + S+ ++++ E +EK +L A++ A Sbjct: 266 DRRYLGEQIPLGRDREMNELAASFNV----MSTELHAFINNLEEKVEEKTAELVQAREEA 321 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL-- 636 E+ + K +FLA +SHEIRTP+ AIIG +++++ + +D S N Sbjct: 322 EEANRVKGEFLATMSHEIRTPMNAIIGINQLLQETHLSQ-------QQRRLVDDSSNAAE 374 Query: 637 -VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L I+ND+LD S++E+ ++ L E + L V L + A + I + + P Sbjct: 375 SLLTIINDILDFSRVEARRLELSDEALELRSFVESLRRLFAVKAERENISLSILVGDEAP 434 Query: 696 R-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYEL 753 + I D ++Q+ N+LSNAI FTP+GG++ ++ + ++ V DTG+G+ + Sbjct: 435 QFICGDPARLRQVLTNLLSNAIKFTPTGGRVTLAADADPAGGNLLFTVSDTGIGIEKDKH 494 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 E+ + F Q +S GTGLGL + + +V+ G + S KG + ++ PL Sbjct: 495 ERIFEMFRQADSSTTRNYGGTGLGLAITRGLVELMGGTIEVESEAGKGAVFRVLLPLRPA 554 Query: 814 SHP 816 + P Sbjct: 555 TGP 557 >gi|194436320|ref|ZP_03068422.1| sensor histidine kinase/response regulator RcsC [Escherichia coli 101-1] gi|253772858|ref|YP_003035689.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|194425048|gb|EDX41033.1| sensor histidine kinase/response regulator RcsC [Escherichia coli 101-1] gi|253323902|gb|ACT28504.1| histidine kinase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|323961524|gb|EGB57132.1| RcsC Alpha-Beta-Loop [Escherichia coli H489] gi|323973081|gb|EGB68275.1| RcsC Alpha-Beta-Loop [Escherichia coli TA007] Length = 949 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|323188054|gb|EFZ73349.1| sensor kinase protein rcsC [Escherichia coli RN587/1] Length = 949 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|261215049|ref|ZP_05929330.1| histidine kinase [Brucella abortus bv. 3 str. Tulya] gi|260916656|gb|EEX83517.1| histidine kinase [Brucella abortus bv. 3 str. Tulya] Length = 843 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 140/254 (55%), Gaps = 4/254 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT D+++ + + L + E K+DF+ VS+E+R+PLT IIGF+E+++ F Sbjct: 583 LTFIDVTDTVRVERALKEKNEALEFADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAF 642 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L N R +EY ++I S +++L IVND+LD++ +++G M L VS+ EA+S A S V Sbjct: 643 GSL-NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRV 701 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + I + A+++ AD V+Q+ N+LSNA+++ P G I++ Sbjct: 702 SERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVAR-DGA 760 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +V+ V D G GM + L+ K F PN + G GLGL + K+ V+ + G+ I Sbjct: 761 DVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRR--RGAGLGLAIVKSFVELHGGRVEID 818 Query: 796 STPAKGTLIEIIFP 809 + +GT + FP Sbjct: 819 TGEERGTTVICRFP 832 >gi|307592311|ref|YP_003899902.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306985956|gb|ADN17836.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1403 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/270 (31%), Positives = 149/270 (55%), Gaps = 14/270 (5%) Query: 554 YSLTMHDISEWKQ---EKNKL----SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 Y ++ DISE K E+++L A+ AEK + K +FLA +SHE+R+PL I+G+ Sbjct: 990 YIGSVIDISERKAAEVERDRLLQREQAARTEAEKANRIKDEFLAVLSHELRSPLNPILGW 1049 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 +++++ ++ L + + + I+R+ L ++ DLLD+S+I GK++L+ PV+L Sbjct: 1050 AKLLQTKK---LDGATFKQALSTIERNAQLQAQLIEDLLDVSRILQGKISLNPIPVNLAS 1106 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 + +I V L AN K I I+T+ + +IL D ++QI N+LSNA+ FT +GG++ Sbjct: 1107 IIRHSIETVYLAANAKSIDIQTTLDETVGQILGDPARLQQIVWNLLSNAVKFTSTGGRVE 1166 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + + + + V DTG G+T+ L F Q ++ + G GLGL + + +V+ Sbjct: 1167 V-LLESVGQSAQITVSDTGKGITSEFLPYVFDYFRQADSTTTRKFGGLGLGLAIVRHLVE 1225 Query: 787 ANMGKFYIFSTPA--KGTLIEIIFPLYDTS 814 + G +P +G + FPL +S Sbjct: 1226 LHGGTVGA-ESPGENQGATFWVKFPLITSS 1254 Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 77/266 (28%), Positives = 132/266 (49%), Gaps = 7/266 (2%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 S ++ + +++E+ + A+ +AE + + K+ F + VSHE RTPLT ++G E + + Sbjct: 305 SASIANAQAYEEERKR---AEALAELDRA-KTVFFSNVSHEFRTPLTLMLGPIEDVLTDK 360 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 PLG P E + R+G +L +VN LLD S+IE+G++ +E L +E S+ Sbjct: 361 DEPLG-PSQQERIEIVQRNGLRLLKLVNTLLDFSRIEAGRVEAVYEATDLSVFTTELASV 419 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 + + + + + D ++I LN+LSNA FT +G +I +S + Sbjct: 420 FRSTIERAGMRLMVNCPPLPEPVYVDREMWEKIVLNLLSNAFKFTLNG-EISVSLEWVKH 478 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V L V DTG+G+ E+ + F ++ +Q EG+G+GL L + +V + G + Sbjct: 479 S-VKLSVNDTGIGIPEAEIPLLFERFHRVKGAQGRSFEGSGIGLSLVQELVKLHQGSIDV 537 Query: 795 FSTPAKGTLIEIIFPLYDTSHPHDCI 820 S GT I P P + I Sbjct: 538 VSVEGLGTCFTIFIPTGTAHLPQERI 563 >gi|59712689|ref|YP_205465.1| hybrid sensory histidine kinase BarA [Vibrio fischeri ES114] gi|59480790|gb|AAW86577.1| hybrid sensory histidine kinase, in two-component regulatory system with GacA [Vibrio fischeri ES114] Length = 931 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 131/237 (55%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ Q + +Y Sbjct: 275 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFT----RQMLKTSLSENQQDYLQT 330 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P +++ E +SL+ A+EK + I Sbjct: 331 IERSANNLLTIINDILDFSKLEAGKLLLENLPFDFQDSLDEVVSLLAPSAHEKGLEITLK 390 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTG 745 +P ++ D ++Q+ N++ NAI FT G I + H +++ V L+ VRDTG Sbjct: 391 IDQRVPSGLIGDPLRIQQVLNNLVGNAIKFTEKGNIDISVELKHLTDDYVDLQFVVRDTG 450 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++ + + + F Q S R GTGLGL + + ++ G+ + S +G+ Sbjct: 451 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLISQMGGEIGLSSRLHQGS 507 >gi|323967660|gb|EGB63072.1| RcsC Alpha-Beta-Loop [Escherichia coli M863] gi|327252487|gb|EGE64146.1| sensor kinase protein rcsC [Escherichia coli STEC_7v] Length = 949 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 7/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 442 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 500 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 501 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 557 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + Sbjct: 558 PLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGD 615 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 616 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 675 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ + PLY +P Sbjct: 676 SEPGMGSQFTVRIPLYGAQYPQ 697 >gi|254718142|ref|ZP_05179953.1| histidine kinase [Brucella sp. 83/13] gi|306837656|ref|ZP_07470525.1| histidine kinase [Brucella sp. NF 2653] gi|306407214|gb|EFM63424.1| histidine kinase [Brucella sp. NF 2653] Length = 859 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 140/254 (55%), Gaps = 4/254 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT D+++ + + L + E K+DF+ VS+E+R+PLT IIGF+E+++ F Sbjct: 599 LTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAF 658 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L N R +EY ++I S +++L IVND+LD++ +++G M L VS+ EA+S A S V Sbjct: 659 GSL-NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRV 717 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + I + A+++ AD V+Q+ N+LSNA+++ P G I++ Sbjct: 718 SERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVAR-DGA 776 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +V+ V D G GM + L+ K F PN + G GLGL + K+ V+ + G+ I Sbjct: 777 DVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRR--RGAGLGLAIVKSFVELHGGRVEID 834 Query: 796 STPAKGTLIEIIFP 809 + +GT + FP Sbjct: 835 TGEERGTTVICRFP 848 >gi|239627023|ref|ZP_04670054.1| PAS/PAC sensor hybrid histidine kinase [Clostridiales bacterium 1_7_47_FAA] gi|239517169|gb|EEQ57035.1| PAS/PAC sensor hybrid histidine kinase [Clostridiales bacterium 1_7_47FAA] Length = 563 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 92/288 (31%), Positives = 144/288 (50%), Gaps = 25/288 (8%) Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHA----KKIA---EKESSHKSDFLARVSHEIRTPLT 601 P + T D+SE + + +L+ A K I+ EK S K+DFL+R+SH+IRTP+ Sbjct: 144 PEYKLFYATYTDVSEEHELQMQLTEALERQKLISSELEKASKAKTDFLSRMSHDIRTPMN 203 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYA-NYIDR---SGNLVLDIVNDLLDISKIESGKMNL 657 AI+G + + K+ N E A +Y+D+ SG ++ ++ND+LDIS+IE + L Sbjct: 204 AILGLAAMAKD-------NLEQTEAAKSYLDKLESSGQFLMGLLNDILDISRIERNAIEL 256 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAI 716 H EP ++E + +LV +K I N RI D QI N+L+NA+ Sbjct: 257 HLEPYGVEEFRQQVEALVVPQCRQKDIEFLFKKENMRYERIRLDKLRFNQIIFNLLNNAV 316 Query: 717 HFTPSGGQIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFG-QIPNSQQIRG 771 +TP GG+I ++ + + L +RD G+GM E +PF + ++ G Sbjct: 317 RYTPKGGRIELTARDLEQADGKQHIQLVIRDNGIGMGREFQEHMYEPFTREGRDAADFDG 376 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 +GLGL + K+MV G + S P KGT + F + D C Sbjct: 377 RSSGLGLAIVKSMVGLMGGTIQVKSEPDKGTQFTLDFWM-DVVQEAAC 423 >gi|194366814|ref|YP_002029424.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas maltophilia R551-3] gi|194349618|gb|ACF52741.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas maltophilia R551-3] Length = 1181 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/248 (30%), Positives = 129/248 (52%), Gaps = 6/248 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q+ H +++AE+ S KS FLA + HE+RTP+T ++G SE++ PL +P Sbjct: 794 RQQWQLTVHKQQLAEQASQAKSRFLATLGHEVRTPMTGVLGMSELLLAT---PL-DPVQR 849 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 YA I ++G+ +L +VND LD+++IE+G++ L P L + + +L+Q A ++++ Sbjct: 850 SYAGSIQQAGSHLLRLVNDALDLARIEAGRLELDLRPFDLAGLLDQVQALMQPMARQRQL 909 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + P + D V+QI LN+L NAI FT G + + + V D Sbjct: 910 AFQRGDDPPGPISVSGDEMRVRQILLNLLGNAIKFTERGHVGLAVRLDDNGAGLCFEVHD 969 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G G+ + E+ F Q + R G+GLGL + + + A G+ + S P KG Sbjct: 970 SGPGINAEQQERLFHRFEQAEGPRTASRYGGSGLGLAICQELAVAMGGRIEVDSQPGKGA 1029 Query: 803 LIEIIFPL 810 ++ PL Sbjct: 1030 RFQVRLPL 1037 >gi|300982788|ref|ZP_07176298.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 200-1] gi|300307053|gb|EFJ61573.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 200-1] gi|324013383|gb|EGB82602.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 60-1] Length = 900 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 133/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TEIADDVPTALMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRIATAP 658 >gi|91978328|ref|YP_570987.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5] gi|91684784|gb|ABE41086.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5] Length = 1122 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 84/265 (31%), Positives = 142/265 (53%), Gaps = 10/265 (3%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 +L M +I +Q +L AK++AE + KS ++ +SHE+R+PL AI G++++++ Sbjct: 643 TLLMQEIDAHRQTDAELQRAKEVAESANLAKSRYVVGLSHELRSPLNAISGYAQLLEQDS 702 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P PR + + RS + + +++ LLDISKIE+G++ L + V L E + + + + Sbjct: 703 SLP---PRPRDQIRLMRRSADHLSGLIDGLLDISKIEAGRLYLSRDEVRLGEFLDQLVGM 759 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +L A K + +P ++ AD + ++Q+ +N+LSNAI FT SG I H Sbjct: 760 FRLQAAAKDVEFVFKRPQYLPPVVYADEKRLRQVLINLLSNAIKFTQSGSVHFI--VHYR 817 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPF--GQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 N L VRDTG G+ +LE+ PF G + SQ GTGLGL ++K + G Sbjct: 818 NPVAELEVRDTGPGIHADDLERIFAPFERGALGVSQP--HTGTGLGLTISKLLAGVMGGD 875 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHP 816 + S +G+ + L + ++P Sbjct: 876 LSVTSALGQGSTFRVKLLLSEVTNP 900 >gi|307626243|gb|ADN70547.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli UM146] Length = 949 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|293410582|ref|ZP_06654158.1| hypothetical protein ECEG_01547 [Escherichia coli B354] gi|291471050|gb|EFF13534.1| hypothetical protein ECEG_01547 [Escherichia coli B354] Length = 949 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|333001362|gb|EGK20930.1| sensor kinase protein rcsC [Shigella flexneri VA-6] Length = 949 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|331657054|ref|ZP_08358016.1| TMAO reductase sytem sensor TorS [Escherichia coli TA206] gi|331055302|gb|EGI27311.1| TMAO reductase sytem sensor TorS [Escherichia coli TA206] Length = 715 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 133/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 237 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 292 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 293 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 349 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 350 TEIADDVPTALMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRTDGEQWLVEVEDSGC 407 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 408 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 463 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 464 RLPLRVATAP 473 >gi|300865119|ref|ZP_07109944.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300336890|emb|CBN55094.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 915 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 145/256 (56%), Gaps = 27/256 (10%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 KQ +L AK AE +S KS+FLA +SHE+RTPL I+G+++++ + N + Sbjct: 424 KQRTAELQEAKLAAELANSAKSEFLANMSHELRTPLNGILGYAQILMRSK-----NIQET 478 Query: 625 EYANY--IDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYA 679 + I + G+ +L ++ND+LD+SKIE+ KM ++ F ++ +AVSE +V++ A Sbjct: 479 DLKGLGIIQQCGSHLLTLINDILDLSKIEARKMEIYPNQFHFLAFLQAVSE---IVRIKA 535 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG------GQIIIST--- 729 +K I + F +P + AD + ++Q+ +N+L NA+ FT G G I ST Sbjct: 536 EQKGITFISQFDPALPVSVQADEKRLRQVLINLLGNAVKFTEEGSVTFKVGVIESSTIDA 595 Query: 730 ---THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 T + ++ ++ DTG+GM+ + +K PF Q+ +S++ R EGTGLGL ++ +V+ Sbjct: 596 EASTFNAINKIRFQIEDTGLGMSEEQKQKIFDPFEQVGDSKR-RAEGTGLGLAISSKIVE 654 Query: 787 ANMGKFYIFSTPAKGT 802 + + S +G+ Sbjct: 655 VMSSQIRVTSQLGEGS 670 >gi|134280682|ref|ZP_01767392.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 305] gi|134247704|gb|EBA47788.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 305] Length = 1014 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 87/264 (32%), Positives = 133/264 (50%), Gaps = 10/264 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DIS K+ + KL A+ A++ + KS FLA +SHEIRTPL AIIG E+++ Sbjct: 505 TLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRS--- 561 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + E + ++ N +L I+ND+LD+SK+ESG+M L P + + E + Sbjct: 562 PLSEQQS-ERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYA 620 Query: 677 LYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIII----STTH 731 A K + + +S + R A D ++Q+ N++ NAI FT G I I + Sbjct: 621 PLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAA 679 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + V DTG+G+ + + Q S R G+GLGLPL + +V G Sbjct: 680 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 739 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSH 815 I S P GT + + PL + H Sbjct: 740 IEIDSLPDFGTTVTVALPLREARH 763 >gi|300863849|ref|ZP_07108773.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300338152|emb|CBN53919.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 725 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 89/278 (32%), Positives = 156/278 (56%), Gaps = 30/278 (10%) Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPL 600 L F+ + L +I + KQ + +L AK+ AE+ +S KS+FLA +SHE+RTPL Sbjct: 202 LIFTWVFRLIYDEIFKRKQTEIQLKEAKEEAEQAKLAAEVANSAKSEFLANMSHELRTPL 261 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL--- 657 I+G+++++ + + +E I + G+ +L ++ND+LD+SKIE+ KM L Sbjct: 262 NGILGYAQILIRSKNIQENELKGLE---IIQQCGSHLLTLINDILDLSKIEARKMELAPN 318 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAI 716 F ++ +AVSE +V++ A +K I + F +P + AD + ++Q+ +N+L NA+ Sbjct: 319 EFHFLAFLQAVSE---IVRIKAEQKGIAFISQFDPALPISVQADEKRLRQVLINLLGNAV 375 Query: 717 HFTPSGG-----QIIISTT-----HTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIP 764 FT GG +I S+T T N ++ ++ DTGVGM+ + +K PF Q+ Sbjct: 376 KFTDRGGVTFKVGVIESSTIEPEASTLNAVNKIRFQIEDTGVGMSEEQRQKIFIPFEQVG 435 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 ++++ EGTGLGL ++ +V+ K + S +G+ Sbjct: 436 ETKRM-AEGTGLGLAISSKIVEVMGSKICVTSQLEQGS 472 >gi|331663724|ref|ZP_08364634.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA143] gi|284922210|emb|CBG35292.1| two-component system sensor kinase [Escherichia coli 042] gi|331059523|gb|EGI31500.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA143] Length = 949 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 7/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 442 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 500 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 501 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 557 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + Sbjct: 558 PLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGD 615 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 616 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 675 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ + PLY +P Sbjct: 676 SEPGMGSQFTVRIPLYGAQYPQ 697 >gi|161950145|ref|YP_402525.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella dysenteriae Sd197] Length = 949 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|116330886|ref|YP_800604.1| sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124575|gb|ABJ75846.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 1231 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 144/249 (57%), Gaps = 3/249 (1%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + KN + + E +KS+FLA +SHE+RTPL +++ S+ + + + L + Sbjct: 548 ELELAKNDIEQKTEQLELSGKYKSEFLANMSHELRTPLNSLLILSKDLADNKKKNLDEDQ 607 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +E AN I +SG+ +L ++N++LD+SKIESGKM+++ E V L V + IS +L A +K Sbjct: 608 -VESANIIYKSGHDLLVLINEVLDLSKIESGKMSVNLERVVLRTFVKDLISGFKLQATKK 666 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ + + ++P +I D + + QI N++SNA+ FT G+I + ++++++ V Sbjct: 667 KLDLDLIYYEDLPEKIRTDPQRLDQILKNLISNALKFTER-GRIQLEVKRQNSDKILFSV 725 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G+G+ + + F Q+ S + GTGLGL +++ + G+ ++ S KG Sbjct: 726 IDSGIGIPEEKYSAIFEAFQQVDGSTSRKYGGTGLGLSISRELAGLLGGEIHLKSKVNKG 785 Query: 802 TLIEIIFPL 810 + ++ P+ Sbjct: 786 STFSLLLPI 794 >gi|237509957|ref|ZP_04522672.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei MSHR346] gi|235002162|gb|EEP51586.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei MSHR346] Length = 1032 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 87/264 (32%), Positives = 133/264 (50%), Gaps = 10/264 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DIS K+ + KL A+ A++ + KS FLA +SHEIRTPL AIIG E+++ Sbjct: 523 TLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRS--- 579 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + E + ++ N +L I+ND+LD+SK+ESG+M L P + + E + Sbjct: 580 PLSEQQS-ERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYA 638 Query: 677 LYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIII----STTH 731 A K + + +S + R A D ++Q+ N++ NAI FT G I I + Sbjct: 639 PLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAA 697 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + V DTG+G+ + + Q S R G+GLGLPL + +V G Sbjct: 698 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 757 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSH 815 I S P GT + + PL + H Sbjct: 758 IEIDSLPDFGTTVTVALPLREARH 781 >gi|194433290|ref|ZP_03065570.1| sensor histidine kinase/response regulator RcsC [Shigella dysenteriae 1012] gi|194418384|gb|EDX34473.1| sensor histidine kinase/response regulator RcsC [Shigella dysenteriae 1012] Length = 949 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|167582935|ref|ZP_02375809.1| multi-sensor hybrid histidine kinase [Burkholderia thailandensis TXDOH] Length = 986 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/262 (32%), Positives = 143/262 (54%), Gaps = 14/262 (5%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T++DI+ K + L A++ A++ + KS FLA +SHEIRTPL A+IG E++K G Sbjct: 476 TVNDITARKLAEQSLDEARRAADQANRSKSVFLATMSHEIRTPLNALIGNLELMKR---G 532 Query: 617 PLGNP--RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 PL + R +E + + + +L I+ND+LD+SK+E+G++ + P + + + Sbjct: 533 PLADAQRRRLE---IVASTSSALLHILNDVLDLSKVEAGQLRIDAVPFDCAVLLRDVTAT 589 Query: 675 VQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 Q A K + + A ++ P + D ++QI N+L NAI FT +G T + Sbjct: 590 FQPLATAKGLHLGCDIAPDMAPLRIGDPIRIRQIVANLLGNAIKFTDTGS----VTLFAA 645 Query: 734 NEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++VI LRV DTG+G++ + + + Q +S + GTGLGL L + +V+A G+ Sbjct: 646 GDDVIELRVVDTGIGISPQAVATIFELYKQADDSIHRKYGGTGLGLALCRRLVNAMGGEI 705 Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814 S P +G+ + PL T+ Sbjct: 706 AARSVPGEGSEFRVGIPLPVTA 727 >gi|157374787|ref|YP_001473387.1| histidine kinase [Shewanella sediminis HAW-EB3] gi|157317161|gb|ABV36259.1| Histidine kinase [Shewanella sediminis HAW-EB3] Length = 1374 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 133/249 (53%), Gaps = 15/249 (6%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK++A S +KS+FLA +SHE+RTPL +I+ S+++ + + G L N + IE A I+ S Sbjct: 655 AKELASA-SKYKSEFLANMSHELRTPLNSILILSQLLASNKAGNL-NDKQIESAKAINSS 712 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G+ +L ++N++LD+SK+E+GK+ L E VS E + L Q A +K + + A + Sbjct: 713 GSDLLSLINEVLDLSKVEAGKVELQIEDVSFQEIEQDINRLYQDIAVDKGLYFDIALAAD 772 Query: 694 IP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----------VILRV 741 +P I D ++QI N+L+NA FT G + +S T +NE V V Sbjct: 773 LPNEIKTDSLRLQQILRNLLTNAFKFTHEGA-VTLSITQPTNEVAARMQQPKQSLVAFTV 831 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +D G+G+ + + F Q S + GTGLGL ++K + G + S KG Sbjct: 832 KDDGIGIKKEKQLGIFQAFQQADGSTSRKYGGTGLGLSISKELTHLLGGTILLKSDEGKG 891 Query: 802 TLIEIIFPL 810 ++ PL Sbjct: 892 CAFTVVLPL 900 >gi|116749724|ref|YP_846411.1| integral membrane sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116698788|gb|ABK17976.1| integral membrane sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 488 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 126/230 (54%), Gaps = 6/230 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K+DF A VSHE+RTPLTAI ++ + GPL + + E + +G + ++ + Sbjct: 250 KADFTAHVSHELRTPLTAIREGIALLLEEIPGPLSSSQK-EILEVVRGNGERLFVSISSI 308 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+S++E M + P L + +++ + A +K I + T N+P ++ D + Sbjct: 309 LDLSRMEGEMMEYQYAPCDLQTLIEKSVQGLDPIARKKNIGVETIRTGNLPLLMLDESRM 368 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKP 759 +Q+ N++SNA+ FTP GG+I I+T ++ V +RV DTG G+ ++EK Sbjct: 369 RQVIDNLMSNALKFTPEGGRISITTVLKRDDREKGRVVEVRVSDTGHGIPEEDVEKVFGR 428 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F + P+ + R +GTGLGL +A+ +V A+ G+ + + PA G I P Sbjct: 429 FYRSPHHRGKRHQGTGLGLAIARHIVTAHGGRIWAENEPASGATIVFTLP 478 >gi|310643958|ref|YP_003948716.1| sensor protein [Paenibacillus polymyxa SC2] gi|309248908|gb|ADO58475.1| Sensor protein [Paenibacillus polymyxa SC2] Length = 556 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 122/221 (55%), Gaps = 8/221 (3%) Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 ++FLA +SHEIRTP+ +IG +++ L N + EYA+ I RS + ++ ++ND+L Sbjct: 170 TEFLAMMSHEIRTPMNGVIGMIDLLMETE---LQNDQQ-EYADIIRRSADALVAVINDIL 225 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSV 704 D +K+ESGKM + P L + E SL + N K + + P +L D+ + Sbjct: 226 DFTKLESGKMEVEEYPFDLVSCIKEVFSLFTVEVNRKNLELVYFLDEQTPPVLYGDMGRL 285 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFG 761 +Q+ +N++SNA+ FT GG + ++ ++ V V+DTG+G+ ++ + PF Sbjct: 286 RQVLINLVSNAVKFTDQGGVYVFASVKERSDNGLTVEFSVKDTGIGIDPAKVGRLFHPFS 345 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 Q+ +S + GTGLGL + K +VD G + ++ +G Sbjct: 346 QLDSSMTRKYGGTGLGLAICKTLVDMMGGDIRVDTSGEQGV 386 >gi|331683895|ref|ZP_08384491.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli H299] gi|331078847|gb|EGI50049.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli H299] Length = 949 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|91211512|ref|YP_541498.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli UTI89] gi|237704693|ref|ZP_04535174.1| sensor protein RcsC [Escherichia sp. 3_2_53FAA] gi|91073086|gb|ABE07967.1| sensor protein RcsC [Escherichia coli UTI89] gi|226901059|gb|EEH87318.1| sensor protein RcsC [Escherichia sp. 3_2_53FAA] gi|294492820|gb|ADE91576.1| sensor histidine kinase/response regulator RcsC [Escherichia coli IHE3034] gi|323952012|gb|EGB47886.1| RcsC Alpha-Beta-Loop [Escherichia coli H252] gi|323955986|gb|EGB51739.1| RcsC Alpha-Beta-Loop [Escherichia coli H263] Length = 949 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|261251802|ref|ZP_05944376.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio orientalis CIP 102891] gi|260938675|gb|EEX94663.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio orientalis CIP 102891] Length = 776 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 84/271 (30%), Positives = 144/271 (53%), Gaps = 7/271 (2%) Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 +R+ + +P S + D++ Q++ L A +AE+ + FLA +SHE+RTP+ Sbjct: 169 IRVTKRAIPDSQKMLTVVDDVTSEYQQRTALEKAHSLAEQAVQSRERFLATMSHELRTPI 228 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 ++IG E++ + G + + ++ + + + NL L +VND+LD SK++S ++L E Sbjct: 229 ASMIGLLELLSFEN-GNIADDYKLK--SLMSSARNLQL-LVNDILDYSKLDSQGISLVEE 284 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFT 719 VS + + + + L + A E+ ++ T + N ++ IL D + QI N+LSNA+ FT Sbjct: 285 LVSYTDLLGDLVRLHEASARERGLVFETQWDNSDVEYILTDALRLSQIVNNVLSNAVKFT 344 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 G I T + + + + V DTG+G+ +LE PF Q +S + + GTGLGL Sbjct: 345 EQGK--IKVTVRVATQSIQIIVDDTGIGICPDKLESIFDPFRQADDSIERKYGGTGLGLA 402 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + K + G I S KGT + I PL Sbjct: 403 IIKKLTTLMSGYISINSAEGKGTSVMISLPL 433 >gi|256017614|ref|ZP_05431479.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella sp. D9] gi|332278624|ref|ZP_08391037.1| hybrid sensory kinase in two-component system response regulatory system with RcsB and YojN [Shigella sp. D9] gi|332100976|gb|EGJ04322.1| hybrid sensory kinase in two-component system response regulatory system with RcsB and YojN [Shigella sp. D9] Length = 949 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|147678165|ref|YP_001212380.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] gi|146274262|dbj|BAF60011.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] Length = 467 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 100/374 (26%), Positives = 188/374 (50%), Gaps = 36/374 (9%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 ++ +IL + SDG+ ++ G ++ N V +LF R +N V+ +Y Sbjct: 120 RIKAILSSMSDGVIAMDAWGRMILINPVVEELF--------RITMAASRGKNILRVIRNY 171 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL- 571 E L L Q LE G ++++ L P + + + + E+ + Sbjct: 172 DLEKL---LNQALET---GRCMQKQIQIL------APEPRVFQVHVIPLQNSGAERGGVV 219 Query: 572 SHAKKIAEKE--SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP----RYIE 625 + + I E++ +S+F+A VSHE+RTPLT+I GF+E + + G L P R++E Sbjct: 220 ALLRDITERKILQEMRSEFVANVSHELRTPLTSIRGFAETLLD---GALEEPDTARRFLE 276 Query: 626 YANY-IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 N +R L+ ++LL++S++ES K +PV++ E + A++++Q A EK + Sbjct: 277 IINSETERLSRLI----DELLNLSRLESHKWVPKRQPVNMGELIKRAVAILQPRAVEKNL 332 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 I+ + ++P + D + Q+ LN++ NA+ +T +GG++ IS T +E+ + V+D Sbjct: 333 AIKINLPEDLPVVQGDPDMLSQVLLNLIENAVVYTQAGGEVSISAAAT-QDEMKVDVKDN 391 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ L + + F ++ ++ GTGLGL + K ++DA+ G + S G+ Sbjct: 392 GIGIPPESLSRVFERFYRVDKARSREQGGTGLGLSIVKHIIDAHRGSVQVESKVGIGSTF 451 Query: 805 EIIFPLYDTSHPHD 818 + PL + D Sbjct: 452 SFVIPLEHQAASED 465 >gi|145698285|ref|NP_416722.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli str. K-12 substr. MG1655] gi|170081838|ref|YP_001731158.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli str. K-12 substr. DH10B] gi|238901393|ref|YP_002927189.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli BW2952] gi|256022099|ref|ZP_05435964.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia sp. 4_1_40B] gi|301024240|ref|ZP_07187935.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 196-1] gi|17433741|sp|P14376|RCSC_ECOLI RecName: Full=Sensor kinase protein RcsC; AltName: Full=Capsular synthesis regulator component C gi|145693157|gb|AAC75278.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli str. K-12 substr. MG1655] gi|169889673|gb|ACB03380.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli str. K-12 substr. DH10B] gi|238861443|gb|ACR63441.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli BW2952] gi|260448688|gb|ACX39110.1| histidine kinase [Escherichia coli DH1] gi|299880503|gb|EFI88714.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Escherichia coli MS 196-1] gi|323936833|gb|EGB33118.1| RcsC Alpha-Beta-Loop [Escherichia coli E1520] gi|323941087|gb|EGB37274.1| RcsC Alpha-Beta-Loop [Escherichia coli E482] gi|332344000|gb|AEE57334.1| sensor kinase RcsC [Escherichia coli UMNK88] Length = 949 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|116051986|ref|YP_789171.1| two-component sensor [Pseudomonas aeruginosa UCBPP-PA14] gi|115587207|gb|ABJ13222.1| probable two-component sensor [Pseudomonas aeruginosa UCBPP-PA14] Length = 1212 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 143/253 (56%), Gaps = 12/253 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DI+E +Q ++L AK +A++ S K+ FLA +SHEIRTP+ A+IG E+ +K G + Sbjct: 685 DITEHRQLIDELEEAKNLADEASRAKTTFLATMSHEIRTPMNAVIGILELALKRAETGRV 744 Query: 619 GNPRY-IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 I YA S +L+++ D+LDI++IESG+++L + +L E V + + Sbjct: 745 DRSSIEIAYA-----SAKSLLELIGDILDIARIESGRLSLSPKRANLRELVESVARVFEG 799 Query: 678 YANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTS 733 A +KR+ + ++I +L D KQI N++SNAI FT G +I S Sbjct: 800 LARQKRLSLVLEIDSSINGDVLLDAMRFKQILSNLVSNAIKFTDEGSIRIRIDGRQVEPS 859 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +V L V DTG+G++ + ++ +PF Q+ + Q EGTGLGL +++++ + G+ Sbjct: 860 LLQVNLCVEDTGIGISLGDQQQLFRPFAQVNRNLQ-NTEGTGLGLVISRSLCEMMGGRLV 918 Query: 794 IFSTPAKGTLIEI 806 + S +GT I++ Sbjct: 919 MSSELGQGTRIDV 931 >gi|332093154|gb|EGI98214.1| sensor kinase protein rcsC [Shigella boydii 5216-82] Length = 949 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|323977585|gb|EGB72671.1| RcsC Alpha-Beta-Loop [Escherichia coli TW10509] Length = 708 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 204 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 262 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 263 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 319 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 320 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 377 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 378 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 437 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 438 GMGSQFTVRIPLYGAQYPQ 456 >gi|293405685|ref|ZP_06649677.1| hybrid sensory kinase [Escherichia coli FVEC1412] gi|298381367|ref|ZP_06990966.1| two-component system [Escherichia coli FVEC1302] gi|291427893|gb|EFF00920.1| hybrid sensory kinase [Escherichia coli FVEC1412] gi|298278809|gb|EFI20323.1| two-component system [Escherichia coli FVEC1302] Length = 949 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|225626475|ref|ZP_03784514.1| sensory box histidine kinase [Brucella ceti str. Cudo] gi|294851326|ref|ZP_06791999.1| sensory box histidine kinase [Brucella sp. NVSL 07-0026] gi|225618132|gb|EEH15175.1| sensory box histidine kinase [Brucella ceti str. Cudo] gi|294819915|gb|EFG36914.1| sensory box histidine kinase [Brucella sp. NVSL 07-0026] Length = 870 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 140/254 (55%), Gaps = 4/254 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT D+++ + + L + E K+DF+ VS+E+R+PLT IIGF+E+++ F Sbjct: 610 LTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAF 669 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L N R +EY ++I S +++L IVND+LD++ +++G M L VS+ EA+S A S V Sbjct: 670 GSL-NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRV 728 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + I + A+++ AD V+Q+ N+LSNA+++ P G I++ Sbjct: 729 SERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVAR-DGA 787 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +V+ V D G GM + L+ K F PN + G GLGL + K+ V+ + G+ I Sbjct: 788 DVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRR--RGAGLGLAIVKSFVELHGGRVEID 845 Query: 796 STPAKGTLIEIIFP 809 + +GT + FP Sbjct: 846 TGEERGTTVICRFP 859 >gi|209919677|ref|YP_002293761.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli SE11] gi|209912936|dbj|BAG78010.1| two-component sensor kinase [Escherichia coli SE11] Length = 949 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|167921296|ref|ZP_02508387.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei BCC215] Length = 927 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 87/264 (32%), Positives = 133/264 (50%), Gaps = 10/264 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DIS K+ + KL A+ A++ + KS FLA +SHEIRTPL AIIG E+++ Sbjct: 418 TLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRS--- 474 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + E + ++ N +L I+ND+LD+SK+ESG+M L P + + E + Sbjct: 475 PLSEQQS-ERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYA 533 Query: 677 LYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIII----STTH 731 A K + + +S + R A D ++Q+ N++ NAI FT G I I + Sbjct: 534 PLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAA 592 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + V DTG+G+ + + Q S R G+GLGLPL + +V G Sbjct: 593 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 652 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSH 815 I S P GT + + PL + H Sbjct: 653 IEIDSLPDFGTTVTVALPLREARH 676 >gi|157161702|ref|YP_001459020.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli HS] gi|170019468|ref|YP_001724422.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli ATCC 8739] gi|157067382|gb|ABV06637.1| sensor histidine kinase/response regulator RcsC [Escherichia coli HS] gi|169754396|gb|ACA77095.1| integral membrane sensor hybrid histidine kinase [Escherichia coli ATCC 8739] Length = 949 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|78356740|ref|YP_388189.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219145|gb|ABB38494.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 907 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 129/256 (50%), Gaps = 10/256 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KNQRFGPL 618 +I E + ++ L AK++AE+ K +FLA +SHE RTP+ AIIG SEVI K + P Sbjct: 355 EIEERIKAEHALREAKELAEEADKAKGEFLANISHEFRTPMNAIIGMSEVILKTELSAPQ 414 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N + ++++ + +LD++N +LD S+ ESGK L P L ++ + Sbjct: 415 RN-----HLTVLNKAAHSLLDLLNTILDFSRYESGKATLALSPFMLHAPFTQVHEMFLSA 469 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSN 734 A K + ++ A ++PR + D ++QI +N++SNA+ FT +G I + Sbjct: 470 AAAKGLPLQLELAPDMPRAVEGDEGKIRQILVNLVSNALKFTDTGNITITCKAFPAPSGR 529 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 ++ V DTG+G+ + F Q S GTGLGL + K + D G + Sbjct: 530 ADICFSVSDTGIGIEKEKHSAIFDSFTQADGSYTRTYGGTGLGLSICKLLADMMGGSITV 589 Query: 795 FSTPAKGTLIEIIFPL 810 S P +G+ + PL Sbjct: 590 RSAPRQGSTFTVCLPL 605 >gi|87306646|ref|ZP_01088793.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] gi|87290825|gb|EAQ82712.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] Length = 704 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/245 (32%), Positives = 135/245 (55%), Gaps = 4/245 (1%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E + + ++L +++ AE + KS+FLA +SHEIRTP+TA++GF++V+ Sbjct: 281 AELEVKNHELEESRRRAEASNLAKSEFLANMSHEIRTPMTAMLGFADVLLEDGDIQKAPK 340 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 I+ I R+G +L ++ND+LD+SKIE+GK+ + + E +SL+Q+ A + Sbjct: 341 SRIDVIRTIQRNGIHLLGLINDILDVSKIEAGKLAVEQVQCRPAAIIKEVLSLMQVRAEQ 400 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 ++ ++ + P+ IL+D ++QI +N++ NAI FT G + S E +L Sbjct: 401 SQVELKLRYETETPQEILSDPTRLRQILMNLIGNAIKFTEEGSVTLAVRFIESPEWPMLE 460 Query: 741 --VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF-ST 797 V DTG+GMT + +PF Q +S R G+GLGL ++ + G + ST Sbjct: 461 FDVIDTGIGMTLEHQQNLFQPFSQADSSMSRRFGGSGLGLAISLRLAGLLGGDVSLVQST 520 Query: 798 PAKGT 802 P G+ Sbjct: 521 PGTGS 525 >gi|320178808|gb|EFW53771.1| Two-component sensor protein RcsC [Shigella boydii ATCC 9905] Length = 949 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|284053245|ref|ZP_06383455.1| two-component hybrid sensor and regulator [Arthrospira platensis str. Paraca] Length = 252 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 139/233 (59%), Gaps = 23/233 (9%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG----PLGNPRYIEYANYIDRSGNLVLDI 640 KS+FLAR+SHE+RTPL AI+GF+++++ + + PL + + E+ I RSG +L++ Sbjct: 2 KSEFLARMSHELRTPLNAILGFTQLMERELYHSPNIPLSDHK--EHLEIIGRSGEHLLEL 59 Query: 641 VNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696 +ND+L++SKIE+G+++L +F +SL ++ E +++L A+ K++ + + ++IP Sbjct: 60 INDVLEMSKIEAGRVSLNPTNFNLISLLNSLRE---MLELPASSKKLTLDFAIDDHIPTY 116 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYEL 753 I AD + ++Q N+L NAI FT GG I+ N ++ V+DTG G+ E+ Sbjct: 117 IYADEQKLRQCLTNLLGNAIKFTLQGGVILRVKLGKFNHDLGQLCFEVQDTGPGIDASEM 176 Query: 754 EKAMKPFGQIP---NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 + +PF Q NSQQ GTGLGL + + + G+ + S KGT+ Sbjct: 177 DLLFEPFSQTETGRNSQQ----GTGLGLSITQKFIGLMGGEIQVSSERGKGTI 225 >gi|167818207|ref|ZP_02449887.1| histidine kinase/response regulator fusion protein [Burkholderia pseudomallei 91] Length = 927 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 87/264 (32%), Positives = 133/264 (50%), Gaps = 10/264 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DIS K+ + KL A+ A++ + KS FLA +SHEIRTPL AIIG E+++ Sbjct: 418 TLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRS--- 474 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + E + ++ N +L I+ND+LD+SK+ESG+M L P + + E + Sbjct: 475 PLSEQQS-ERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYA 533 Query: 677 LYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIII----STTH 731 A K + + +S + R A D ++Q+ N++ NAI FT G I I + Sbjct: 534 PLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAA 592 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + V DTG+G+ + + Q S R G+GLGLPL + +V G Sbjct: 593 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 652 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSH 815 I S P GT + + PL + H Sbjct: 653 IEIDSLPDFGTTVTVALPLREARH 676 >gi|158340478|ref|YP_001521472.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158310719|gb|ABW32333.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] Length = 929 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 84/260 (32%), Positives = 137/260 (52%), Gaps = 22/260 (8%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 N+L +K AE + KS FLA +SHE+RTPL AI+GFS+++ L + + N Sbjct: 403 NQLRESKNKAEAANQAKSAFLANMSHELRTPLNAILGFSQLLARDENLTLSQKQNL---N 459 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RSG+ +L+++ND+L++SKIE+GK++L+ L + + L A K +++ Sbjct: 460 SINRSGSHLLNLINDVLEMSKIEAGKISLNPTNCDLLLLLDSLQEMFALKAKSKGLVLNI 519 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII-----------STTHTSNE- 735 ++ IP I D ++Q+ +N+L+NA+ FT SG + S TH N+ Sbjct: 520 QKSSKIPLYIYIDENRLRQVLINLLTNALKFTESGSVTLRVSTQAISLPEESATHPQNDT 579 Query: 736 -----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + V DTG+G+ EL+ F Q + QQ + EGTGLGL + V+ G Sbjct: 580 TQPSLSLYFEVEDTGIGIAEDELDDIFDAFIQTSSGQQSQ-EGTGLGLAICHHFVNLMQG 638 Query: 791 KFYIFSTPAKGTLIEIIFPL 810 + S +GT + + P+ Sbjct: 639 DIQLQSRQGQGTTVFMQIPV 658 >gi|119492448|ref|ZP_01623769.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119453114|gb|EAW34283.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1027 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/253 (31%), Positives = 136/253 (53%), Gaps = 15/253 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + + +L AK+ A+ + KS+FLA +SHE+RTPL AI+GF+++++ + +YI Sbjct: 545 QHQAEELKQAKEAADAANKAKSEFLANMSHELRTPLNAILGFTQLMQRDVSLKADHQQYI 604 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + N +SG +L ++ND+L++SKIE+G+ L+ L + + +L++L A K + Sbjct: 605 KIVN---KSGEHLLGLINDVLELSKIEAGRTTLNETEFDLYQLLCSLETLLKLKAQAKNL 661 Query: 685 LIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------V 737 +R + +P + D ++Q+ +N+L NAI FT G T N+E + Sbjct: 662 SLRFEIDSQVPPFIKNDENKLRQVLINLLGNAIKFTNKGN----VTLRVINQELEQLNTL 717 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 I V DTG G+ E++ K F Q ++ + EGTGLGL +++ V GK I S Sbjct: 718 IFAVEDTGPGIPPEEVQDLFKAFKQTKTGRESQ-EGTGLGLRISQNFVQMMGGKITIESE 776 Query: 798 PAKGTLIEIIFPL 810 KG+ P+ Sbjct: 777 VGKGSCFSFALPI 789 >gi|37676294|ref|NP_936690.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] gi|37200835|dbj|BAC96660.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] Length = 984 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 128/255 (50%), Gaps = 11/255 (4%) Query: 571 LSHAKK--IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 L+HAK +AE+ + KS FLA +SHEIRTP+ ++G + ++ + PL YA+ Sbjct: 469 LNHAKARSLAEQANRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPLQK----RYAD 524 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RSG +L I+ND+LD SKIE+G + + L + V + L+Q A EK + Sbjct: 525 IINRSGKNLLAILNDVLDYSKIEAGHLEIRESAFELHQMVEDTFQLMQSRAAEKSLTFSY 584 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGV 746 +++ D+ + Q+ N++ NAI FT G I + E V+ V DTG+ Sbjct: 585 HIESDVNHYWRGDVTRISQVLNNLVGNAIKFTHQGAVDIYVSLDLEQENVVQFEVTDTGI 644 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ E F Q Q+ G GTGLGL +++ ++ A G+ + S +G+ Sbjct: 645 GIAQQEQATLFDAFTQASGGQKAAG-GTGLGLAISRRIIQAMGGQMEMASEEGEGSRFWF 703 Query: 807 IFPL--YDTSHPHDC 819 PL D P C Sbjct: 704 TVPLTPCDAVEPVVC 718 >gi|89109037|ref|AP_002817.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli str. K-12 substr. W3110] gi|1736873|dbj|BAA16014.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli str. K12 substr. W3110] Length = 807 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 7/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 426 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 484 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 485 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 541 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + Sbjct: 542 PLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGD 599 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 600 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 659 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ + PLY +P Sbjct: 660 SEPGMGSQFTVRIPLYGAQYPQ 681 >gi|312171320|emb|CBX79579.1| K07678 two-component system, NarL family, sensor histidine kinase BarA [Erwinia amylovora ATCC BAA-2158] Length = 924 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 132/237 (55%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ Q N +Y + Sbjct: 293 ELDMAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTR----QTLKTTLNSTQRDYLHT 348 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P L + E + L+ A+EK + + + Sbjct: 349 IERSANNLLSIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLN 408 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILRVRDTG 745 +++P + D ++QI +N+L NAI FT SG I + SN E+ +++ DTG Sbjct: 409 IQSDVPDNAIGDPLRMQQIIVNLLGNAIKFTESGNIDIRVEKRALSNNRMELEVQIHDTG 468 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++ + + + F Q S R GTGLGL + + +V+ G+ S +G+ Sbjct: 469 IGISEKQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGS 525 >gi|188493885|ref|ZP_03001155.1| sensor histidine kinase/response regulator RcsC [Escherichia coli 53638] gi|188489084|gb|EDU64187.1| sensor histidine kinase/response regulator RcsC [Escherichia coli 53638] Length = 949 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|161986500|ref|YP_311159.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella sonnei Ss046] gi|191165347|ref|ZP_03027189.1| sensor histidine kinase/response regulator RcsC [Escherichia coli B7A] gi|193062260|ref|ZP_03043355.1| sensor histidine kinase/response regulator RcsC [Escherichia coli E22] gi|193068180|ref|ZP_03049144.1| sensor histidine kinase/response regulator RcsC [Escherichia coli E110019] gi|194427111|ref|ZP_03059662.1| sensor histidine kinase/response regulator RcsC [Escherichia coli B171] gi|293415518|ref|ZP_06658161.1| two-component system [Escherichia coli B185] gi|293446568|ref|ZP_06662990.1| two-component system [Escherichia coli B088] gi|307311208|ref|ZP_07590852.1| integral membrane sensor hybrid histidine kinase [Escherichia coli W] gi|331668924|ref|ZP_08369772.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA271] gi|331678173|ref|ZP_08378848.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli H591] gi|190904510|gb|EDV64217.1| sensor histidine kinase/response regulator RcsC [Escherichia coli B7A] gi|192931926|gb|EDV84525.1| sensor histidine kinase/response regulator RcsC [Escherichia coli E22] gi|192958459|gb|EDV88898.1| sensor histidine kinase/response regulator RcsC [Escherichia coli E110019] gi|194414732|gb|EDX31003.1| sensor histidine kinase/response regulator RcsC [Escherichia coli B171] gi|291323398|gb|EFE62826.1| two-component system [Escherichia coli B088] gi|291433166|gb|EFF06145.1| two-component system [Escherichia coli B185] gi|306908714|gb|EFN39211.1| integral membrane sensor hybrid histidine kinase [Escherichia coli W] gi|315061526|gb|ADT75853.1| hybrid sensory kinase in two-component regulatory system with RcsB and RcsD [Escherichia coli W] gi|320199813|gb|EFW74402.1| Two-component sensor protein RcsC [Escherichia coli EC4100B] gi|323161685|gb|EFZ47568.1| sensor kinase protein rcsC [Escherichia coli E128010] gi|323168624|gb|EFZ54304.1| sensor kinase protein rcsC [Shigella sonnei 53G] gi|323184157|gb|EFZ69534.1| sensor kinase protein rcsC [Escherichia coli 1357] gi|323377894|gb|ADX50162.1| integral membrane sensor hybrid histidine kinase [Escherichia coli KO11] gi|323945034|gb|EGB41099.1| RcsC Alpha-Beta-Loop [Escherichia coli H120] gi|324117892|gb|EGC11791.1| RcsC Alpha-Beta-Loop [Escherichia coli E1167] gi|331064118|gb|EGI36029.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA271] gi|331074633|gb|EGI45953.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli H591] Length = 949 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|152983814|ref|YP_001346548.1| two-component sensor [Pseudomonas aeruginosa PA7] gi|150958972|gb|ABR80997.1| probable two-component sensor [Pseudomonas aeruginosa PA7] Length = 1215 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 106/349 (30%), Positives = 174/349 (49%), Gaps = 25/349 (7%) Query: 472 GIILSTNRAVSKLFGYPVEDILRK-----PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 G +LS NR+ G E +L + P F + P +YL + +++ Sbjct: 594 GRMLSCNRSYLSSVGLVAEQVLNRTVLELPMENF--ETGPQFHRNYLEAMRDGRTIESVH 651 Query: 527 KITLGSTK---EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 ++ LG K + + R + C L DISE ++ +L AK +A++ S Sbjct: 652 EVVLGGRKCWIDHWIQPFRDANGTVRGVICGWL---DISEHRKLVAELKEAKNLADEASR 708 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPLGNPRY-IEYANYIDRSGNLVLDIV 641 K+ FLA +SHEIRTP+ A+IG E+ +K G + I YA S +L+++ Sbjct: 709 AKTTFLATMSHEIRTPMNAVIGILELALKRADTGRVDRSSIEIAYA-----SAKSLLELI 763 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRTSFANNIPRILAD 700 D+LDI++IESG++ L + +L E V + + A +KR+ LI A+ +L D Sbjct: 764 GDILDIARIESGRLGLSPKRANLRELVESVARVFEGLARQKRLSLILDIDASINGDVLLD 823 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGVGMTNYELEKAM 757 KQI N++SNAI FT G I H S +V L V DTG+G++ + ++ Sbjct: 824 AMRFKQILSNLVSNAIKFTDEGSISIRIDGHLVEPSLLQVNLCVEDTGIGISLGDQQQLF 883 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 +PF Q+ + Q EGTGLGL + +++ + G+ + S +GT +++ Sbjct: 884 RPFAQVERNVQ-NTEGTGLGLVICRSLCEMMGGRLVMSSALGQGTRVDV 931 >gi|293409372|ref|ZP_06652948.1| TMAO reductase system sensor TorS [Escherichia coli B354] gi|291469840|gb|EFF12324.1| TMAO reductase system sensor TorS [Escherichia coli B354] Length = 904 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLSD---NPALNTQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIHLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TAIADDVPTALMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPTKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|330879671|gb|EGH13820.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 976 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/267 (28%), Positives = 142/267 (53%), Gaps = 8/267 (2%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 SL + +I ++ L AK+ +E ++ KS ++ +SHE+RTPL +I+GF+++++ Sbjct: 652 SLLIQEIDAHEKTDQALQKAKEASEAANAAKSRYITGLSHELRTPLNSILGFTQILQRDT 711 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P P + + I RS + +L ++N LLD++KIE+GK+ L + E + + + Sbjct: 712 TTP---PHHQDPLATIMRSSSHLLSLINGLLDVAKIEAGKLKLEPTEILFQEFLHDLEKM 768 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 A EK + R +P ++ D + V+QI +N+L NA++FT S G++++ ++ Sbjct: 769 FASTAQEKNLGFRLELEGRMPMVVRGDEKRVRQILINLLGNAVNFTDS-GEVVLRVSY-R 826 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E I + DTG+G+ ++E+ +PF + Q G GLGL + + + G Sbjct: 827 RETAIFDIVDTGIGIAPEQIERIFQPFER--GGQTRHDNGVGLGLTITRMLTALMGGALS 884 Query: 794 IFSTPAKGTLIEIIFPLYDTSHPHDCI 820 + STP +GT ++ L + P I Sbjct: 885 VSSTPGEGTHFKVRLFLSEVRVPKAVI 911 >gi|320196090|gb|EFW70714.1| Two-component sensor protein RcsC [Escherichia coli WV_060327] Length = 949 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|313108338|ref|ZP_07794370.1| putative two-component sensor [Pseudomonas aeruginosa 39016] gi|310880872|gb|EFQ39466.1| putative two-component sensor [Pseudomonas aeruginosa 39016] Length = 741 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 137/252 (54%), Gaps = 10/252 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E ++ +L A + A++ + KS FLA +SHEIRTP+ A+IG E++ QR P Sbjct: 223 DITERERLARQLREAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILELVL-QRLAPEQ 281 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R Y + +G+L L ++ D+LD++KIESG + L E V L V + + A Sbjct: 282 RERASLEVAY-EAAGSLQL-LIGDILDVAKIESGHLTLTPERVRLRHVVESVRRMFEGLA 339 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 +K + + + R +L D KQ+ N++SNAI FT GQ+ I S +E Sbjct: 340 RQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTER-GQVTIRLQERSLDEGR 398 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 I+R V D+G+G+ + + +PF Q+ + ++G GTGLGL + + +VD G + Sbjct: 399 AIVRVGVEDSGIGIAPADQARLFQPFIQVAKGRTVQG-GTGLGLAICRKLVDLMGGDVEM 457 Query: 795 FSTPAKGTLIEI 806 S P KGT + + Sbjct: 458 HSEPGKGTRVSL 469 >gi|302851080|ref|XP_002957065.1| hypothetical protein VOLCADRAFT_98081 [Volvox carteri f. nagariensis] gi|300257621|gb|EFJ41867.1| hypothetical protein VOLCADRAFT_98081 [Volvox carteri f. nagariensis] Length = 2041 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 118/228 (51%), Gaps = 2/228 (0%) Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 + K F++ +SHE+RTPL II S+ + G + NP+ + I S N +L+I+N Sbjct: 272 TRKDQFMSLMSHELRTPLNGIIQLSDALVRGAGGEM-NPKGQHFVKTIKNSSNHLLNIIN 330 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702 D+LD++ ++ GK+ + E SL +AV + +V A K + I S + P I+AD Sbjct: 331 DILDVAALKEGKLTIKHELCSLAKAVEHVVDIVAPLA-RKDVAIERSVDPHTPLIIADFS 389 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 V QI N+ NA+ FT G + + V L+V DTG+G+ + F Q Sbjct: 390 RVIQILYNLAGNALKFTHRGRVCVRVSPSADGSSVTLQVADTGIGIPPERISGIWGAFEQ 449 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + S + GTGLGL + K +V+A+ GK + S +GT + P+ Sbjct: 450 VDMSVTRKYGGTGLGLNIVKQLVEAHEGKIEVQSAEGRGTTFTVTLPV 497 >gi|218548556|ref|YP_002382347.1| hybrid sensory histidine kinase TorS [Escherichia fergusonii ATCC 35469] gi|218356097|emb|CAQ88714.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia fergusonii ATCC 35469] Length = 914 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 88/253 (34%), Positives = 135/253 (53%), Gaps = 25/253 (9%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN---Y 629 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + NP + Sbjct: 434 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD-------NPALSTQRDDLRA 486 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRI 684 I SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I Sbjct: 487 ITDSGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLMES---NLQLMSGRVKGRPI 543 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + T+ A+++P ++ D R ++Q+ N+LSNA+ FT GQII+ + T E+ +L V D Sbjct: 544 RLATAIADDVPTALMGDPRRIRQVITNLLSNALRFTDE-GQIILR-SRTDGEQWLLEVED 601 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ Sbjct: 602 SGCGIDPAKLTEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSC 657 Query: 804 IEIIFPLYDTSHP 816 + PL + P Sbjct: 658 FCLRLPLRIATAP 670 >gi|110642428|ref|YP_670158.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli 536] gi|191170203|ref|ZP_03031757.1| sensor histidine kinase/response regulator RcsC [Escherichia coli F11] gi|306814668|ref|ZP_07448830.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli NC101] gi|110344020|gb|ABG70257.1| sensor protein RcsC [Escherichia coli 536] gi|190909719|gb|EDV69304.1| sensor histidine kinase/response regulator RcsC [Escherichia coli F11] gi|305852062|gb|EFM52514.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli NC101] Length = 949 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|26248607|ref|NP_754647.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli CFT073] gi|227887276|ref|ZP_04005081.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli 83972] gi|312967520|ref|ZP_07781735.1| sensor kinase protein rcsC [Escherichia coli 2362-75] gi|331647873|ref|ZP_08348965.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli M605] gi|331658298|ref|ZP_08359260.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA206] gi|26109012|gb|AAN81215.1|AE016763_174 Sensor protein rcsC [Escherichia coli CFT073] gi|227835626|gb|EEJ46092.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli 83972] gi|307554285|gb|ADN47060.1| capsular synthesis regulator component C [Escherichia coli ABU 83972] gi|312287717|gb|EFR15622.1| sensor kinase protein rcsC [Escherichia coli 2362-75] gi|331043597|gb|EGI15735.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli M605] gi|331056546|gb|EGI28555.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli TA206] Length = 949 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|260428952|ref|ZP_05782929.1| sensory box sensor histidine kinase/response regulator [Citreicella sp. SE45] gi|260419575|gb|EEX12828.1| sensory box sensor histidine kinase/response regulator [Citreicella sp. SE45] Length = 783 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 100/375 (26%), Positives = 177/375 (47%), Gaps = 16/375 (4%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQ 503 R+ + E QL + +D +++ I+ N +++ G+ ++++ R P V Sbjct: 228 RESQAEARQLALVARHANDSFMLLDNALRIIWVNEGFTRMKGFHADEVMGRTPVEVL--- 284 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKI-TLGSTKEEKLLSLRIIIKKLPFSSCYS----LTM 558 P LTEI L +I L TK+ + + + + + +S +T Sbjct: 285 AGPDSDLEALTEISRSALAGEPLRIEILNYTKDGRQIWVEAVFAPMLDASGTVEKVIVTE 344 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI++ + +L+ AK+ AE + K+ FLA +SHEIRTP+ IIG ++++ + G L Sbjct: 345 RDITDARLRAIELADAKERAESGARAKAAFLATMSHEIRTPMNGIIGMADLLSD---GAL 401 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + Y I S +L I+ND+LD SK+E+ K + EP SL + +A +++ Sbjct: 402 SEDQQL-YVATIRTSAEALLKIINDILDYSKLEADKFAIVAEPFSLAACIRDAAGILRPQ 460 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A EK + + +P +L D ++QI +N+L NA+ FT +GG + + + V Sbjct: 461 ALEKGLFLDICHERPLPDSVLGDSGRLRQILINLLGNAVKFTATGGVTLTTRVEGDDAGV 520 Query: 738 IL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 L V+D+G+G+ E+ F Q R GTGLGL +++ + G + Sbjct: 521 ALTVTVQDSGIGVAPDRAERIFDQFEQADAETTRRFGGTGLGLAISRELAVRMGGGLRLV 580 Query: 796 STPAKGTLIEIIFPL 810 G E+ L Sbjct: 581 EGRGSGACFELTLRL 595 >gi|182414650|ref|YP_001819716.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177841864|gb|ACB76116.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 964 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/252 (30%), Positives = 129/252 (51%), Gaps = 12/252 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ +L A+ AE+ + KSDFLA +SHE+RTPL +IG ++++N P ++ Sbjct: 425 RESAQRLELARDAAERATKAKSDFLAVMSHELRTPLAGVIGVLDLLRNN------PPAHL 478 Query: 625 --EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 EY S +L I++D+LD +KIE+GK+ + P E +L A K Sbjct: 479 LREYTAVARDSAESLLRILDDILDTAKIEAGKLRIEAVPFRPREVFKNVCEAARLRAEAK 538 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI-- 738 ++ + F+ N+P +L D ++Q+ N+ +NA+ FT SG + ++ E V+ Sbjct: 539 KLEFKHIFSANMPEVLVGDPVRLRQVVDNLQNNALKFTESGSITVTLTCPEVRKESVVFL 598 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + VRDTG G+ + + F Q S R GTGLGL + KA+ ++ G + S P Sbjct: 599 IAVRDTGCGIDQATQLRLFEKFEQADVSTTRRYGGTGLGLSIVKALAESMNGSVSVESEP 658 Query: 799 AKGTLIEIIFPL 810 +G + PL Sbjct: 659 GRGATFTFVVPL 670 >gi|167905032|ref|ZP_02492237.1| histidine kinase/response regulator fusion protein [Burkholderia pseudomallei NCTC 13177] Length = 922 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 87/264 (32%), Positives = 133/264 (50%), Gaps = 10/264 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DIS K+ + KL A+ A++ + KS FLA +SHEIRTPL AIIG E+++ Sbjct: 413 TLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRS--- 469 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + E + ++ N +L I+ND+LD+SK+ESG+M L P + + E + Sbjct: 470 PLSEQQS-ERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYA 528 Query: 677 LYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIII----STTH 731 A K + + +S + R A D ++Q+ N++ NAI FT G I I + Sbjct: 529 PLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAA 587 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + V DTG+G+ + + Q S R G+GLGLPL + +V G Sbjct: 588 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 647 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSH 815 I S P GT + + PL + H Sbjct: 648 IEIDSLPDFGTTVTVALPLREARH 671 >gi|161984916|ref|YP_408495.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Shigella boydii Sb227] gi|320185893|gb|EFW60643.1| Two-component sensor protein RcsC [Shigella flexneri CDC 796-83] gi|332093693|gb|EGI98751.1| sensor kinase protein rcsC [Shigella boydii 3594-74] Length = 949 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|254236017|ref|ZP_04929340.1| hypothetical protein PACG_01973 [Pseudomonas aeruginosa C3719] gi|126167948|gb|EAZ53459.1| hypothetical protein PACG_01973 [Pseudomonas aeruginosa C3719] Length = 741 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 137/252 (54%), Gaps = 10/252 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E ++ +L A + A++ + KS FLA +SHEIRTP+ A+IG E++ QR P Sbjct: 223 DITERERLARQLREAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILELVL-QRLAPEQ 281 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R Y + +G+L L ++ D+LD++KIESG + L E V L V + + A Sbjct: 282 RERASLEVAY-EAAGSLQL-LIGDILDVAKIESGHLTLTPERVRLRHVVESVRRMFEGLA 339 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 +K + + + R +L D KQ+ N++SNAI FT GQ+ I S +E Sbjct: 340 RQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTER-GQVTIRLQERSLDEGR 398 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 I+R V D+G+G+ + + +PF Q+ + ++G GTGLGL + + +VD G + Sbjct: 399 AIVRVDVEDSGIGIAPADQARLFQPFIQVAKGRTVQG-GTGLGLAICRKLVDLMGGDVEM 457 Query: 795 FSTPAKGTLIEI 806 S P KGT + + Sbjct: 458 HSEPGKGTRVSL 469 >gi|89100386|ref|ZP_01173250.1| sensory box histidine kinase PhoR [Bacillus sp. NRRL B-14911] gi|89084905|gb|EAR64042.1| sensory box histidine kinase PhoR [Bacillus sp. NRRL B-14911] Length = 587 Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 103/397 (25%), Positives = 193/397 (48%), Gaps = 34/397 (8%) Query: 420 KANQFPENMPQNGIEPEDVDTRINK-----RKMEIEVMQLCSILEATSDGIAIINREGII 474 +A + +N+ + G+ ++ + E++ +L +++E G+ +I+ G I Sbjct: 208 RARTYEDNIDETGMLSSSINVLARNLQDMVKAQEMQQDRLGTLIENMGSGLILIDSRGYI 267 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQN--TPSVMNHYLTEILSLDLRQTLEKITLGS 532 N+ ++FG + + +EQ T V + ++TE ++T +++ + Sbjct: 268 SLVNKPYYEIFGLEPHGYVGNLYYEVIEQKEITDLVEDIFMTE------QKTRKQMVIPV 321 Query: 533 TKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 E K + II L HDI+E K KL +K DF+A Sbjct: 322 AIERKHFEVYGVPIIGTNDVWKGILLVFHDITELK----KLEQMRK----------DFVA 367 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISK 649 VSHE++TP+T+I GFSE + + G + + + + + I + + + ++ DLLD+SK Sbjct: 368 NVSHELKTPITSIKGFSETLLD---GAMHDQAALSAFLDIILKESDRLQSLIQDLLDLSK 424 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709 E L + + L + E ++++ A +K I I S + I D +KQ+ + Sbjct: 425 TEQQGFRLSVQEMDLSSLLGECLAILNGKAKDKAIDIEYSDQSGNGWIKGDPHRLKQVFI 484 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 N+L+NAI +TP GG+I +S ++V + V+DTG+G+ E+ + + F +I ++ Sbjct: 485 NLLTNAITYTPQGGKISVS-LEEKEDKVQVEVKDTGMGIDQDEIPRIFERFYRIDKARSR 543 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 GTGLGL + K +V+A+ G + S KGT ++ Sbjct: 544 NSGGTGLGLAIVKHLVEAHKGSITVESEVGKGTTFKV 580 >gi|209523205|ref|ZP_03271761.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209496356|gb|EDZ96655.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1366 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 133/234 (56%), Gaps = 5/234 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK+ A+ + KS+FLA +SHE+RTPL AI+GF++++ Q G + +Y Sbjct: 885 QLQQAKEAADTANRAKSEFLANMSHELRTPLNAILGFTQLL-GQNSGLTSQQQ--DYLQI 941 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I +SG +L ++N++LD+SKIE+G + L+ +L + +++Q+ A+ K +++ Sbjct: 942 IQQSGKYLLSLINEVLDLSKIEAGTVTLNPTNFNLRTLLERINTMLQIKASSKNLVLDIQ 1001 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 +IP + D ++Q+ +N+L NAI FT +G + + +S ++ V DTG G+ Sbjct: 1002 LDQDIPDYVKTDESKLRQVLVNLLDNAIKFTDAGYVTLRGSFVSSVSQLYFEVEDTGPGI 1061 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 T E E+ +PF Q ++ +GTGLGL +++ V+ GK I S G Sbjct: 1062 TPDEQERLFQPFVQTDVGRR-HQQGTGLGLAISQQYVNLMGGKITIVSVVDGGA 1114 >gi|91222987|ref|ZP_01258253.1| putative two-component sensor [Vibrio alginolyticus 12G01] gi|91191800|gb|EAS78063.1| putative two-component sensor [Vibrio alginolyticus 12G01] Length = 632 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 135/250 (54%), Gaps = 8/250 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ + +L + AE + KS+FLA +SHEIRTP+ IIG S ++ + +P+ Sbjct: 224 KEHQTELEAERDRAEVANRKKSEFLATMSHEIRTPMNGIIGVSSLLNDTDL----DPQQK 279 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E+ ID S + ++ I++D+LD SK+E+GK+ L + L E + + ISL + A +K + Sbjct: 280 EFVEIIDSSSHSLMTIIDDILDFSKVEAGKVELEYTSYDLRELLDDVISLHSVKAKQKNL 339 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILR 740 + ++ ++P + D +KQ+ N+LSNAI FT G +++++ + E + R Sbjct: 340 QLLSNIDPHLPIEVQGDATRLKQVLNNLLSNAIKFTERGHVKLLVALSRLDGETAHIRFR 399 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D+G+G+ + + F Q S + GTGLGL +A +V+ G+ + S Sbjct: 400 VVDSGIGIAKEHQQAIFERFQQADGSTTRKYGGTGLGLAIAAQLVNLMGGEIQLTSELGL 459 Query: 801 GTLIEIIFPL 810 G+ E P+ Sbjct: 460 GSCFEFSIPV 469 >gi|283850599|ref|ZP_06367886.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio sp. FW1012B] gi|283573842|gb|EFC21815.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio sp. FW1012B] Length = 577 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/239 (31%), Positives = 125/239 (52%), Gaps = 17/239 (7%) Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL-------------GNPRYIEYANYIDR 632 SDFL+ VSHEIRTPLT+++GF+ VI +R L + +E I Sbjct: 341 SDFLSMVSHEIRTPLTSVLGFA-VIIEKRLEQLFLPLLDRDPRRRRQAEQVMENLGIIVS 399 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL-VQLYANEKRILIRTSFA 691 G + ++ND+LD++K+E+GKM E V E V +S V L ++ K++ + T Sbjct: 400 EGERLKHLINDVLDLAKLEAGKMAFKQERVDPAEVVRHVMSASVGLLSSHKKVSLDTRIE 459 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 +P +L D + Q+ +N++SNA+ FT G + T +++ V DTG+G+ Sbjct: 460 GRLPEVLGDRDRLIQVLVNLVSNALKFTERGS--VTCRARTEGHYIVVDVTDTGIGIPES 517 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 E K + F QI + + +GTGLGL + K +V+++ G+ + S P G+ P+ Sbjct: 518 EQHKVFEKFNQIGATLTNKPKGTGLGLAICKHIVESHGGRIFYVSKPGSGSTFTFTLPI 576 >gi|269964754|ref|ZP_06178991.1| putative two-component sensor [Vibrio alginolyticus 40B] gi|269830414|gb|EEZ84636.1| putative two-component sensor [Vibrio alginolyticus 40B] Length = 632 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 134/250 (53%), Gaps = 8/250 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ + +L + AE + KS+FLA +SHEIRTP+ IIG S ++ + +P+ Sbjct: 224 KEHQTELEAERDRAEVANRKKSEFLATMSHEIRTPMNGIIGVSSLLNDTDL----DPQQK 279 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E+ ID S + ++ I++D+LD SK+E+GK+ L + L E + + ISL + A +K + Sbjct: 280 EFVEIIDSSSHSLMTIIDDILDFSKVEAGKVELEYTSYDLRELLDDVISLHSVKAKQKNL 339 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVR 742 + + ++P + D +KQ+ N+LSNAI FT G +++++ + E +R R Sbjct: 340 QLLSDIDPHLPMEVQGDATRLKQVLNNLLSNAIKFTERGHVKLLVALSRLDGETAHIRFR 399 Query: 743 --DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 D+G+G+ + + F Q S + GTGLGL +A +V+ G+ + S Sbjct: 400 VVDSGIGIAKEHQQAIFERFQQADGSTTRKYGGTGLGLAIAAQLVNLMGGEIQLTSELGL 459 Query: 801 GTLIEIIFPL 810 G+ E P+ Sbjct: 460 GSCFEFSIPV 469 >gi|260598667|ref|YP_003211238.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Cronobacter turicensis z3032] gi|260217844|emb|CBA32357.1| Sensor kinase protein rcsC [Cronobacter turicensis z3032] Length = 703 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 84/258 (32%), Positives = 132/258 (51%), Gaps = 7/258 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ Q P G Sbjct: 200 DVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTQEL-PKG 258 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + + S +L+L I++D+LD SKIES ++ + S E +S + Q Sbjct: 259 VDRLV---TAMHNSSSLLLKIISDILDFSKIESEQLKIEPREFSPRELMSHITANYQPLV 315 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P +L D ++Q+ N+LSNAI FT G II T + + Sbjct: 316 VRKQLGLYCFIEPDVPMTLLGDPMRLQQVISNLLSNAIKFTDIG--CIILHVGTQGDYLC 373 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + +++ G + + Sbjct: 374 FRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDTET 433 Query: 799 AKGTLIEIIFPLYDTSHP 816 G+ I PL+ P Sbjct: 434 GMGSQFTIRIPLWQAQLP 451 >gi|315498055|ref|YP_004086859.1| pas/pac sensor hybrid histidine kinase [Asticcacaulis excentricus CB 48] gi|315416067|gb|ADU12708.1| PAS/PAC sensor hybrid histidine kinase [Asticcacaulis excentricus CB 48] Length = 512 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 100/382 (26%), Positives = 181/382 (47%), Gaps = 39/382 (10%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L +I+ ++ D I +GII + N ++FGY + ++ Sbjct: 16 LAAIVASSDDAIVSKTLDGIITTWNAGAERIFGY----------------TAAEAVGQHI 59 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 T I+ LD+ E + +G + + + +++ + +++ +S + E ++ Sbjct: 60 TLIIPLDMHDE-EYVIIGKVRSGQRVEHFETVRRTKSGALIDISL-TVSPVRDEAGRIIG 117 Query: 574 AKKIAE------------KESSHKSD-FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 A KIA E++ + D F+A +SHE+RTP+ A+IG + ++ P + Sbjct: 118 ASKIARDITRQKGIEAQLAEANRRRDEFMANMSHELRTPMNAVIGLAHILS---LSPNLS 174 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 R Y + +SG +L ++N+LLD+SKIE+G + L +L E + + +S ++ A Sbjct: 175 EREQSYVRVLKQSGENLLHLINNLLDVSKIEAGAIELETREFNLPELIEQTVSAPRVRAA 234 Query: 681 EKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEE 736 EK + ++ + L D V+QI +N+L+NA+ FT +G ++ + T Sbjct: 235 EKGVGFGVTYGAQVREFYLGDPLRVQQILINLLANAVKFTDTGRIDLRLSVVRTEAHCAR 294 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V V DTGVG+ +L+ + F Q S R GTGLGL +A+A+ + G S Sbjct: 295 VRFEVMDTGVGIPLDKLDTIFEKFTQADASMTRRYGGTGLGLSIARALAEQMGGTLSASS 354 Query: 797 TPAKGTLIEIIFPL-YDTSHPH 817 TP +G + PL +D + P Sbjct: 355 TPGQGAIFTAELPLSHDPARPQ 376 >gi|298528358|ref|ZP_07015762.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298512010|gb|EFI35912.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1012 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 102/380 (26%), Positives = 180/380 (47%), Gaps = 38/380 (10%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 ++ ++ ++ D I ++ +G I N +FGY ++++ K L P + Sbjct: 441 RMQAVTDSAHDAIIMMGPDGEISYWNPMAESIFGYTAQEVMGKSLHHLL---APERYHTD 497 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK---KLPFSSCYSLTM----------- 558 +T+ + + ++T + +G T E L I K ++P S S + Sbjct: 498 ITKAMP-EFQRTGQGNAVGKTIE-----LSAIGKDGLEIPISLSMSSVLLQGRWHAVGIA 551 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DIS K + +L AK+ AE + KS FLA +SHE+RTP I+G ++++ Sbjct: 552 RDISRRKAAEKELIQAKEQAEAANIAKSKFLANMSHELRTPFNGIMGMMQLLQTTDL--- 608 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLV 675 N E+ N +S + ++ D+L++S IE+GKM++ F L E++S+ S Sbjct: 609 -NDEQQEFVNLAIQSSERFVRLLTDILELSNIEAGKMSICSAEFRTGELLESLSDLFSAE 667 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII----ISTT 730 L +K I++ S ++P ++ D VKQ+ ++ NA+ FT SG + IS Sbjct: 668 AL---KKGIVLEFSMEPDVPEQVSGDKTRVKQVMFTLVGNALKFTESGSVQVHLTSISGA 724 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + V DTG+G+ + +L PF Q+ S + +G GLGL L K +VD G Sbjct: 725 KGGDTRLKFSVSDTGIGIPDDKLSTLFNPFVQVDGSYTRKYQGAGLGLSLVKRLVDMMNG 784 Query: 791 KFYIFSTPAKGTLIEIIFPL 810 + S +GT + ++ P Sbjct: 785 NISVESEVDRGTTVHVVLPF 804 >gi|83859411|ref|ZP_00952932.1| sensory box histidine kinase/response regulator [Oceanicaulis alexandrii HTCC2633] gi|83852858|gb|EAP90711.1| sensory box histidine kinase/response regulator [Oceanicaulis alexandrii HTCC2633] Length = 624 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 101/338 (29%), Positives = 164/338 (48%), Gaps = 27/338 (7%) Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL------------ 538 DIL +P + E +T +++ E LS ++R+ E + G ++ L Sbjct: 133 DILGRPELAYQEISTETLIAFAHPEHLS-EVREMSEALLRGDHEQTNLEHMIINGRGETV 191 Query: 539 ---LSLRIIIKK---LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + +RI+ + LP + D+++ K+ ++ L A AE S KS FLA + Sbjct: 192 WIKVYIRIVDRDHNDLPIRMIG--IVEDLTQHKRAEDTLKAALAHAEAASEAKSQFLANM 249 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHEIRTPL ++G ++++ N R E+ I SG +L I+ D+LD+SKIE+ Sbjct: 250 SHEIRTPLNGVLGIAQLLALTDL----NDRQKEFVQTIRSSGRALLSIIEDILDLSKIEA 305 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNI 711 GK+ L PV + + E + A K + +R S A + R+ + D V+QI N+ Sbjct: 306 GKLKLVQRPVRPSDVIEETVQAHAPDAERKALPLRLSQAPELSRVAMVDANRVRQILSNL 365 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 L NAI FT + G++ + T + + V DTG GM+ ++ F Q S Sbjct: 366 LGNAIKFTET-GEVRVDALWTETGRIRVEVHDTGPGMSETVQKRVFGRFEQADMSHSRSH 424 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 EG+GLGL +A+ +V G+ + S P +G FP Sbjct: 425 EGSGLGLAIARELVVLMGGQIGVHSRPGQGACFWFEFP 462 >gi|217422964|ref|ZP_03454466.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 576] gi|217393872|gb|EEC33892.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 576] Length = 1014 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 87/264 (32%), Positives = 133/264 (50%), Gaps = 10/264 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DIS K+ + KL A+ A++ + KS FLA +SHEIRTPL AIIG E+++ Sbjct: 505 TLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRS--- 561 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + E + ++ N +L I+ND+LD+SK+ESG+M L P + + E + Sbjct: 562 PLSEQQS-ERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYA 620 Query: 677 LYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIII----STTH 731 A K + + +S + R A D ++Q+ N++ NAI FT G I I + Sbjct: 621 PLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAA 679 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + V DTG+G+ + + Q S R G+GLGLPL + +V G Sbjct: 680 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 739 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSH 815 I S P GT + + PL + H Sbjct: 740 IEIDSLPDFGTTVTVALPLREARH 763 >gi|45655765|ref|YP_003574.1| histidine kinase sensor protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602736|gb|AAS72211.1| histidine kinase sensor protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 841 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 99/310 (31%), Positives = 159/310 (51%), Gaps = 27/310 (8%) Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 L Q NH +E L+L+L+ TL++ +LL+L+ L + Sbjct: 403 LAQQLTQAFNH--SEDLALELKSTLQE---NIETHNELLALK------------ELQNTN 445 Query: 561 ISEWKQEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 + Q + + L A+ AE + KS FLA +SHEIRTPL IIG E K+ PL Sbjct: 446 LEFQVQSRTRELLKARDDAEFANKVKSQFLASMSHEIRTPLNGIIGLIEQFKST---PLD 502 Query: 620 -NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N +YI N I +SG +L I+ND+LD SK+E K+NL E V E I + Sbjct: 503 ENQQYIR--NLIQKSGENLLKIINDILDFSKLEEDKINLELHEFYWKETVEETIGIFLYQ 560 Query: 679 ANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQII--ISTTHTSNE 735 A +K +++ ++ + I + + D R + Q+ N++SNA+ FT SG I S + Sbjct: 561 ATQKGLVLSVDYSPDFIDKSVGDKRRITQVLSNLISNAVKFTDSGKIQIRAFSEKIETKI 620 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 E ++V D+G+G+ +++ + F Q+ +S + GTGLGL ++K +V+ GK ++ Sbjct: 621 EYKIQVIDSGIGIPREKIDLLFQKFFQLDSSISRKYGGTGLGLAISKKLVELMNGKIHVS 680 Query: 796 STPAKGTLIE 805 +KG+ E Sbjct: 681 QNKSKGSTFE 690 >gi|16124976|ref|NP_419540.1| sensor histidine kinase / response regulator [Caulobacter crescentus CB15] gi|13421950|gb|AAK22708.1| sensor histidine kinase / response regulator [Caulobacter crescentus CB15] Length = 591 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/249 (34%), Positives = 127/249 (51%), Gaps = 11/249 (4%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q+ L AK AE S KS+FLA +SHE+RTPL ++G S+ +K + PL P E Sbjct: 207 QQGRALELAKSQAEAASQAKSEFLALMSHELRTPLNGMLGLSQALKLE---PL-EPGERE 262 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 ++ SG +L ++ND+LD++KIE+GK+++ L + + Q A EK Sbjct: 263 QVELLEESGRTLLALLNDVLDMAKIEAGKLDIAPTQEDLSRLAERVVRINQAQAREKGTE 322 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VIL 739 I PR +L D V+Q N++SNA+ FTP+ GQI + T + ++ + Sbjct: 323 ITLEIDPATPRALLFDPLRVRQCLGNLVSNAVKFTPA-GQIRVRVTCEAGDQPDRMLAKI 381 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTGVGM L + PF Q + R GTGLGL + + + G + ST Sbjct: 382 IVSDTGVGMGPAVLARIFTPFEQADPTIARRTGGTGLGLNITRRLAQMMGGSVSVRSTEG 441 Query: 800 KGTLIEIIF 808 KG+ + F Sbjct: 442 KGSTFTLTF 450 >gi|71018371|ref|XP_759416.1| hypothetical protein UM03269.1 [Ustilago maydis 521] gi|46098947|gb|EAK84180.1| hypothetical protein UM03269.1 [Ustilago maydis 521] Length = 1482 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 132/247 (53%), Gaps = 10/247 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + E E+++ A+ A++ S KS+FLA +SHEIRTP+ +IG SE++ + + + Sbjct: 906 LEESMHERSRALAAETAAKEASRIKSEFLANMSHEIRTPIAGVIGLSELLCDTQL----S 961 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 ++A I RS + +L ++ND+LD K+E GKM+L +L+ + + ++ Sbjct: 962 QEQRDFAENIQRSADALLTVINDILDFEKLELGKMDLEKTAFNLNVVIMDTQKMLTFATQ 1021 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 +K + R N +I+ D ++Q+ N+L+NAI FT + G I + T ++ Sbjct: 1022 KKGLEFRNECQLNFTGQIVGDAGRLRQVLTNLLTNAIKFT-AVGSITLRVIETYEDQKSL 1080 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V VRDTG G++ L++ +PF Q S R GTGLGL + K +VD G + Sbjct: 1081 HVHFEVRDTGCGISQATLKRLFQPFSQADPSFARRFGGTGLGLSICKNLVDLMGGTIGLE 1140 Query: 796 STPAKGT 802 S KG+ Sbjct: 1141 SVENKGS 1147 >gi|268679228|ref|YP_003303659.1| ATP-binding region ATPase domain protein [Sulfurospirillum deleyianum DSM 6946] gi|268617259|gb|ACZ11624.1| ATP-binding region ATPase domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 1068 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 83/253 (32%), Positives = 138/253 (54%), Gaps = 16/253 (6%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 ++ KK AE+ S+ KS FLA +SHEIRTPL IIGF+E++KN + E+ + I Sbjct: 374 IAKEKKNAEEASAAKSIFLANMSHEIRTPLNGIIGFTELLKNSDL----DEEKREFVDVI 429 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY---ANEKRILIR 687 ++S +L I+N++LD+SK+ES K+ + SL + E + V++Y A EK I + Sbjct: 430 EKSSENLLAIINNILDLSKVESNKIEID---ESLFSPIDEFENAVEVYGPKAAEKNIQLS 486 Query: 688 TSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-----EEVILRV 741 ++ L D +K++ +N++SNA+ FTP+ GQI + N +V+ V Sbjct: 487 LYMDPSLHNYLKGDSVKIKEVLINLMSNAVKFTPNNGQITVEIKRLENAPLDKAKVLFSV 546 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RD+G+G+ ++E F Q ++ + GTGLGL ++ + GK + S +G Sbjct: 547 RDSGIGINKEKIEGIFDAFNQADSTITRKFGGTGLGLTISSKYIALMGGKLDVESEEGQG 606 Query: 802 TLIEIIFPLYDTS 814 + I L ++S Sbjct: 607 SRFFFILDLPESS 619 >gi|313498283|gb|ADR59649.1| Multi-sensor hybrid histidine kinase [Pseudomonas putida BIRD-1] Length = 1149 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/248 (29%), Positives = 135/248 (54%), Gaps = 3/248 (1%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E Q + +L ++ S +KS+FLA +SHE+RTPL + + ++++ G L + Sbjct: 459 ELSQAQLELQARADDLQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENGEGNLSEEQ 518 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +++A I +GN +L+++ND+LDI+K+E+GK+ + E ++ V + Q A K Sbjct: 519 -VKFAESIYSAGNDLLNLINDILDIAKVEAGKLEVRPETTQVERLVEGLRGMFQPLAGHK 577 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + +P L D + ++QI N+LSNA+ FT G Q+ ++ + + ++ V Sbjct: 578 GLAFEVKVEPQVPVTLFTDRQRLEQILKNLLSNALKFTERG-QVSMNVSFQAGSGIVFAV 636 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RDTG+G+ + + F Q+ + R GTGLGL +++ + G+ + S+P +G Sbjct: 637 RDTGIGIAADQQQAIFGAFHQVDGTSNRRYGGTGLGLSISRDLAHLLGGQINVDSSPGQG 696 Query: 802 TLIEIIFP 809 ++ +I P Sbjct: 697 SVFSLILP 704 >gi|218704409|ref|YP_002411928.1| hybrid sensory histidine kinase TorS [Escherichia coli UMN026] gi|218431506|emb|CAR12384.1| hybrid sensory histidine kinase in two-component regulatory system with TorR [Escherichia coli UMN026] Length = 950 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 133/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 472 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 527 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 528 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIHLA 584 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 585 TEIADDVPTALMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRTDGEQWLVEVEDSGC 642 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 643 GIDPTKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 698 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 699 RLPLRVATAP 708 >gi|254459383|ref|ZP_05072804.1| Hpt sensor hybrid histidine kinase [Campylobacterales bacterium GD 1] gi|207083996|gb|EDZ61287.1| Hpt sensor hybrid histidine kinase [Campylobacterales bacterium GD 1] Length = 958 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 136/256 (53%), Gaps = 8/256 (3%) Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 S L E + L+ AK+ AE + K+ F++ +SHEIRTP+ AI+GFS ++ Sbjct: 434 SRLVELVAQRTQELSKANKLLAKAKESAELANKSKNIFISNMSHEIRTPMNAILGFSRLL 493 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + + N + Y + ++ +L ++ D LD+SKIE+GK+ + P V+E Sbjct: 494 SHTKL----NNQQKTYLSRAKKATKSLLSLLEDTLDLSKIEAGKLTIENIPFQPKVIVTE 549 Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QII 726 L++L A EK +LI ++P+ +L D +KQ+ +N+++NAI FT G + Sbjct: 550 ITELLELNAKEKGLLIEYEIDEHLPKYLLGDPNRIKQVLINLINNAIKFTQDGSIYVSVF 609 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 +++ + N V V DTG+G+ L + F Q+ NS + +GTGLGL ++K +V Sbjct: 610 VNSKNIHNCCVEFVVSDTGIGIKKENLADIFEHFTQVDNSTTKKEDGTGLGLAISKELVK 669 Query: 787 ANMGKFYIFSTPAKGT 802 G+ + S +G+ Sbjct: 670 RMGGQIDVQSEYREGS 685 >gi|73748089|ref|YP_307328.1| sensor histidine kinase [Dehalococcoides sp. CBDB1] gi|73659805|emb|CAI82412.1| sensor histidine kinase [Dehalococcoides sp. CBDB1] Length = 581 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 100/364 (27%), Positives = 177/364 (48%), Gaps = 41/364 (11%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L ++LE DGI +++REG I N A ++F ++ F ++ +H + Sbjct: 251 LSAVLERMGDGIFLLDREGSINLLNHASERIFKLEAGGVIGHSFV-------EAIRDHEI 303 Query: 514 TEILSL---DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 + +Q + + L + K L II L S Y + + D+SE + + Sbjct: 304 NAVFERAKSSGKQEMGFVELTAGKR----FLGIIATPLVSQSGYLVLVQDLSELR----R 355 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L ++ DF+A +SHE+RTP+T++ +E ++ G +P A +I Sbjct: 356 LEKVRR----------DFVANISHELRTPITSLKLLTETLQE---GAASDPDV--AAGFI 400 Query: 631 DRSGNLVLD----IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 D+ +L +D +V +L D+S IESG+ L+ +P + A+ A + A I++ Sbjct: 401 DKI-HLEVDKLAQLVTELSDLSAIESGQAVLNLQPGDIRTAIKLAAERLSPQAERAGIIL 459 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 +PR+ D V+Q+ +N++ NAI FTP GG+I I T ++ +++ V D+G+ Sbjct: 460 GVELPETLPRVRLDENRVEQVLVNLVHNAIKFTPKGGKIKIG-VRTQSQTLVVYVTDSGI 518 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + + F ++ S+ G GTGLGL ++K +V A+ G + S KG Sbjct: 519 GIPEDDLTRVFERFYKVDKSRS--GGGTGLGLAISKHIVQAHGGSIWAESVYGKGATFSF 576 Query: 807 IFPL 810 PL Sbjct: 577 SLPL 580 >gi|86138545|ref|ZP_01057118.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp. MED193] gi|85824605|gb|EAQ44807.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp. MED193] Length = 793 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 118/232 (50%), Gaps = 7/232 (3%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S K F AR+SHE+RTP+ I+G +EV+++ NP+ Y I S +L I+ Sbjct: 286 SLSKDRFFARMSHELRTPMNGILGLAEVLEHTAL----NPQQRSYLKTISGSATSLLSII 341 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILAD 700 ND+LD SK GK E SL + + EA L+Q A++K + + +P D Sbjct: 342 NDILDYSKATEGKFTFANERFSLKDTIYEAAGLIQPLAHDKNLDFWIEYPLTVPTHFFGD 401 Query: 701 LRSVKQIALNILSNAIHFTPSG--GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 V+Q+ LN L NA+ FT +G G T + ++ L + DTG G+ +++ Sbjct: 402 SARVRQVLLNHLGNALKFTQNGHVGLRAAYQTVDGDAQLSLSIVDTGRGIPEEQMDTLFS 461 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + Q +I EGTGLGL ++KA+V+ G ++ ST KG+ + L Sbjct: 462 AYEQANQETEIAVEGTGLGLAISKALVEQMGGAIHVVSTIGKGSCFTVSLAL 513 >gi|126731549|ref|ZP_01747355.1| sensory box histidine kinase/response regulator [Sagittula stellata E-37] gi|126708085|gb|EBA07145.1| sensory box histidine kinase/response regulator [Sagittula stellata E-37] Length = 886 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 105/389 (26%), Positives = 181/389 (46%), Gaps = 46/389 (11%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL--------- 493 +R+ME +I+ + D + ++RE I+ N A ++FGY + + Sbjct: 224 TRRRME-------TIISTSLDAVVAVSRENRIIEWNGAAERVFGYTRAEAIGTDMPTLIV 276 Query: 494 --------RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 R + +L P V+ + ++ ++ T+ + L K Sbjct: 277 PPHFREMHRSGMSRYLNDGEPRVIGRGIVQLEAMRKDGTVFPVDLSLAKANS-------- 328 Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 P + + DIS+ + L A+ A K++ LA +SHE+RTPL I+G Sbjct: 329 ---PTGEIFVAFLRDISDRVRSDEALRRARDRAVAGEKQKAELLAVMSHEMRTPLNGILG 385 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPV 662 E+++ P + RY+ I +S ++L VN++LDIS++++GKM L F+ V Sbjct: 386 TLELLEADSL-PAEDQRYL---RIIRQSSEILLGHVNEVLDISRLDAGKMTLRKTRFDLV 441 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 +L E + E S + +L + + +D ++QI LN++SNAI FT +G Sbjct: 442 ALLEEIVE--SQADRARAQGNLLTLRPPNPALHEVYSDPDRLRQILLNLVSNAIKFT-AG 498 Query: 723 GQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 G+I+I S ++ LRV DTGVG+ +L + F I +S R GTGLGL ++ Sbjct: 499 GRIMIEADCDSGMDDCELRVIDTGVGIKPDDLARIFDDFVTIDSSYGRRNTGTGLGLSIS 558 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + A G+ S P G++ + PL Sbjct: 559 QRLATALGGELGAESEPGDGSVFWLRLPL 587 >gi|75910979|ref|YP_325275.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704704|gb|ABA24380.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 680 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/267 (29%), Positives = 139/267 (52%), Gaps = 16/267 (5%) Query: 557 TMHDISEWKQEKNKLSH------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 T+ DI+ KQ + + A++ AE + K +FLA +SHE+RTPLT+++G+S+++ Sbjct: 260 TLEDITARKQSEEIRAQVIREQTARQEAEAANRMKDEFLAVLSHELRTPLTSMLGWSKIL 319 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + ++ R +E I+R+ N + ++ D+LD+S+I G++ L+ PV+L V Sbjct: 320 RAKKLDEKATARALEA---IERNANSQVQLIEDILDVSRIIRGQLRLNLSPVNLTTVVEA 376 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 A+ V+ A+ K + I T+ + + D ++QI N+L+NAI FTP G++ I Sbjct: 377 ALEAVRPLADTKSMTINTALDYTLSPVSGDSARLQQIVWNLLTNAIKFTPKEGKVEIRLE 436 Query: 731 HTSN------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 S ++V DTG+G+ L K + F Q ++ G GLGL + + + Sbjct: 437 GISGGLSDDLTHAQIQVIDTGIGIEREFLPKVFERFRQADSTTTRSHNGLGLGLAIVRHL 496 Query: 785 VDANMGKFYIFS-TPAKGTLIEIIFPL 810 V+ + G S KG + FPL Sbjct: 497 VELHKGTILAESPGVGKGATFTVRFPL 523 >gi|332528708|ref|ZP_08404685.1| two-component system sensor-response regulator hybrid protein [Hylemonella gracilis ATCC 19624] gi|332041774|gb|EGI78123.1| two-component system sensor-response regulator hybrid protein [Hylemonella gracilis ATCC 19624] Length = 1345 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/271 (31%), Positives = 135/271 (49%), Gaps = 12/271 (4%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y + D++ KQ + L AK+ AE + KSDFLA +SHEIRTP+ AI+G +++ Q Sbjct: 583 YIVVSTDVTVLKQAEEALVKAKQKAEDATQAKSDFLANMSHEIRTPMNAILGLCYLLEQQ 642 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 P E I +G +L I+ND+LD SKIE+ M + P L + + S Sbjct: 643 SLSPTSR----EMVQKIHAAGKTLLTIINDVLDFSKIEAQHMVIEQVPFRLSDVLDNLAS 698 Query: 674 LVQLYANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH- 731 ++ K + L+ + ++ D + Q+ +N+ SNAI FT G++ + Sbjct: 699 IMSASLGSKPLELVVGPPPDGANYLIGDRLRLGQVLVNLASNAIKFT-GQGEVEVRVDRL 757 Query: 732 --TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 T N V+LR VRDTG+G+ + E F Q S GTGLGL +++ +V Sbjct: 758 PDTGNGRVMLRFSVRDTGIGIAPDKQEMIFHAFSQADTSTTRSFGGTGLGLAISRHLVAL 817 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 G+ + S P +G+ P ++ S+P D Sbjct: 818 MGGRLQVHSAPGQGSNFHFELP-FELSNPMD 847 >gi|326627964|gb|EGE34307.1| putative two-component sensor kinase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 936 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 128/256 (50%), Gaps = 17/256 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L+ AKK AE+ + KS L +SHE+RTP+ ++G E+++ P IE Sbjct: 393 ERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQT-------TPLNIE 445 Query: 626 YANYIDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 D + N +L I+N+LLD S IESG LH E +L + +A+ +Q A K Sbjct: 446 QQGLADTARNCTLSLLAIINNLLDFSCIESGHFTLHMEETALLPLLDQAMQTIQGPAQSK 505 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ +RT ++P D ++QI +N+L NA+ FT +GG I T E++I V Sbjct: 506 KLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG--IRLTVKRHEEQLIFLV 563 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G G+ + + F Q + Q GTG+GL +A ++ G + S P G Sbjct: 564 SDSGKGIEIQQQSQIFTAFYQADTNSQ----GTGIGLTIASSLAKMMGGNLTLKSVPGVG 619 Query: 802 TLIEIIFPLYDTSHPH 817 T + ++ PL + P Sbjct: 620 TCVSLVLPLQEYQPPQ 635 >gi|302669543|ref|YP_003829503.1| two component system histidine kinase/response regulator hybrid protein [Butyrivibrio proteoclasticus B316] gi|302394016|gb|ADL32921.1| two component system histidine kinase/response regulator hybrid protein [Butyrivibrio proteoclasticus B316] Length = 1419 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 138/252 (54%), Gaps = 9/252 (3%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 ++ +++ AK+ AE+ ++ KS FLA +SHEIRTP+ I+G E+I + + ++ Sbjct: 806 KQYEEITKAKEEAERANTAKSRFLANMSHEIRTPINTILGMDEMILREDARDVPKAYFLS 865 Query: 626 YANY---IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 NY I + +L ++NDLLD+SKIESGKM+L + + + + +S+++ + EK Sbjct: 866 IMNYSLDIKNATESLLGLINDLLDMSKIESGKMHLVEQEYDVQDQLRSIVSMIRSRSTEK 925 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI--- 738 ++ +P R+ D +KQ+ LN+L+NA+ +T +G + N+++ Sbjct: 926 ELIFEVVIDEILPTRMYGDNGKIKQVVLNLLTNAVKYTAAGAVEFSVSMEARNDDICDLR 985 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V+DTG+G+ +++K + ++ + +GTGLGL +++ + GK + S Sbjct: 986 FSVKDTGIGVKEEDMDKLFTAYERLDEEKNSGIQGTGLGLDISRRFAELMGGKLWCESVY 1045 Query: 799 AKGTLIEIIFPL 810 +G+ E I L Sbjct: 1046 GEGS--EFILTL 1055 >gi|258516891|ref|YP_003193113.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257780596|gb|ACV64490.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 544 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 83/250 (33%), Positives = 136/250 (54%), Gaps = 20/250 (8%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI------KNQRFG 616 E +Q+ +LS A+K AE + KS FLA +SHEIRTP+ AIIG ++++ K QR Sbjct: 140 ELEQKMMQLSLAQKAAEAANIAKSAFLANMSHEIRTPMNAIIGMADLLWETSLTKEQR-- 197 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 EY +G +L+++ND+LD+SK+E+G + L + ++ + V + + + Sbjct: 198 --------EYVGIFRTAGQNLLNLINDILDLSKVEAGHLKLEQQDFNIKKLVEKTVEFMS 249 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + AN K + + ++P ++ D ++QI +N+L NAI FT G I+I + E Sbjct: 250 VQANIKFLSLSYQIKPDVPGFVVGDQNRLQQILVNLLGNAIKFTEKGEVILIIEKLSMQE 309 Query: 736 E-VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 E V L+ V DTG+G+ + E + F Q S + GTGLGL + K +V+A G Sbjct: 310 ENVFLKFSVSDTGIGIEKEKSEIIFESFTQADASTTSKFGGTGLGLTICKRLVEAMGGHI 369 Query: 793 YIFSTPAKGT 802 + S +G+ Sbjct: 370 GVESEIEQGS 379 >gi|254182943|ref|ZP_04889536.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1655] gi|184213477|gb|EDU10520.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1655] Length = 1014 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 87/264 (32%), Positives = 133/264 (50%), Gaps = 10/264 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DIS K+ + KL A+ A++ + KS FLA +SHEIRTPL AIIG E+++ Sbjct: 505 TLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRS--- 561 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + E + ++ N +L I+ND+LD+SK+ESG+M L P + + E + Sbjct: 562 PLSEQQS-ERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYA 620 Query: 677 LYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIII----STTH 731 A K + + +S + R A D ++Q+ N++ NAI FT G I I + Sbjct: 621 PLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAA 679 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + V DTG+G+ + + Q S R G+GLGLPL + +V G Sbjct: 680 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 739 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSH 815 I S P GT + + PL + H Sbjct: 740 IEIDSLPDFGTTVTVALPLREARH 763 >gi|86747750|ref|YP_484246.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris HaA2] gi|86570778|gb|ABD05335.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris HaA2] Length = 837 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/266 (30%), Positives = 131/266 (49%), Gaps = 5/266 (1%) Query: 546 KKLPF-SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 K +P LT DIS+ + + L + E K DF+ VS+E+R+PLT II Sbjct: 566 KTMPLPDGATMLTFQDISDTENVERALRERNEALETADRIKIDFVHHVSYELRSPLTTII 625 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 GF+ ++ + GPL N + EY YI S N +L I+N++LD++ I++G M L+ P+ + Sbjct: 626 GFAHLLGDPSTGPL-NDKQSEYIAYITSSTNALLAIINNILDLASIDAGAMTLNLGPIEI 684 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 ++ A +Q +I + I + D R V Q+ N+L+NAI F+P+ Sbjct: 685 RRTIAAAAEGIQDRLARDQITLDIDTDPAIGEFVGDERRVVQVLYNLLANAIGFSPNEAT 744 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + + V+ V D G G+ +K F +SQ R G GLGL L ++ Sbjct: 745 VKL-VVRKKGTNVVFTVTDAGPGIAPALKDKVFDLFES--DSQGSRHRGPGLGLALVRSF 801 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810 V+ + GK + S GT + FP+ Sbjct: 802 VELHGGKVEVDSVVGHGTSVICEFPI 827 >gi|88859263|ref|ZP_01133903.1| sensory box sensor histidine kinase/response regulator [Pseudoalteromonas tunicata D2] gi|88818280|gb|EAR28095.1| sensory box sensor histidine kinase/response regulator [Pseudoalteromonas tunicata D2] Length = 884 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 91/279 (32%), Positives = 145/279 (51%), Gaps = 27/279 (9%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF------SEVI 610 T+ +++ Q L A + AE+ + KS FLA +SHEIRTP+ I G +E+ Sbjct: 353 TISLLAQSNQLNQDLLKATEKAEQATEFKSIFLANMSHEIRTPINGISGLIDLCLATELT 412 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 QR +++ A Y S NL++ +VND+LD SKIE+GK+++ + SL+ + Sbjct: 413 HRQR-------DFLDKAAY---STNLLMSLVNDILDFSKIEAGKLSIEYIQFSLEAIIDN 462 Query: 671 AISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 I+ + + EK + + A N+PR+ + D V QI N+ +NA+ FT S G I I+ Sbjct: 463 LIANIAPRSYEKNLHLNCEIAPNLPRLFMGDPLRVNQILFNLCTNAVKFT-SIGSITITV 521 Query: 730 THTS------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + ++IL V DTGVG+T +++ F Q S + GTGLGL + K Sbjct: 522 LFEAIPNNDKQIKLILSVSDTGVGLTEQQIDNIFNAFIQADGSISRKYGGTGLGLSIVKQ 581 Query: 784 MVDANMGKFYIFSTPAKGT--LIEIIFPLYD-TSHPHDC 819 +V G+ + STP G+ +E++ + D T DC Sbjct: 582 LVKLMGGEISVNSTPDVGSSFCVELMLDVVDQTDILFDC 620 >gi|332704625|ref|ZP_08424713.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554774|gb|EGJ51818.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1051 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 98/366 (26%), Positives = 169/366 (46%), Gaps = 32/366 (8%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 + E+ G ++ G L N+A + GY ED++ + F F+ ++ YL E Sbjct: 543 LYESVPLGYQSLDARGCYLEVNQAWLEAMGYSREDVIGQRFGRFVTESAA-----YLAE- 596 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIII---------KKLPFSSCYSLTMHDISEWKQE 567 S + +I+ + + R I ++ F + + MHD++ ++ Sbjct: 597 -SFAAFKQCGEISGAEFEMVRKDGSRFIAAFYGKISTDEQGRFRQTHCI-MHDVTARRRA 654 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + ++ A+ AE S KS FLA +SHE+RTPL I+G E+ + + +Y Sbjct: 655 EEEIRRAQSAAEAASRAKSMFLAHMSHELRTPLNGILGMVELAHM----ACADEKQCKYL 710 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 +SG+ +LDI+ND+LD++KIE+GK L EP SL E + I + + K + + Sbjct: 711 ELAKQSGHTLLDIINDILDLAKIEAGKAELKNEPFSLREVMESTIEPLAMLGRRKGLEVT 770 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG----------GQIIISTTHTSNEE 736 IP R+ D ++Q+ N++ NA+ FT G G + Sbjct: 771 WRMDPRIPDRLAGDQGRLRQVLANLVGNALKFTERGSVSVDLGLSRGGFETRPYCPAGMR 830 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +I + DTG+G+ +L + F Q S ++ GTGLGL ++K +V+ G + S Sbjct: 831 LIFSIADTGIGIPQDKLPHLFESFTQALTSAHVKFGGTGLGLCISKRLVEMMQGTIWAES 890 Query: 797 TPAKGT 802 KG+ Sbjct: 891 VVGKGS 896 >gi|307138876|ref|ZP_07498232.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli H736] Length = 708 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 204 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 262 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 263 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 319 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 320 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 377 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 378 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 437 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 438 GMGSQFTVRIPLYGAQYPQ 456 >gi|300311948|ref|YP_003776040.1| sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] gi|300074733|gb|ADJ64132.1| sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1145 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 136/248 (54%), Gaps = 6/248 (2%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L + +I KQ +L AK+ AE + KS F+A +SHE+RTPL +I+G+++++ Sbjct: 659 LLLQEIEAHKQTDAELQRAKEAAESANLAKSRFVAGMSHELRTPLNSILGYAQILHVDAT 718 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P P + I RSG +L +++ LLDI+KIE+GKM L + ++L+ + + + + Sbjct: 719 IP---PARKDAIGVIRRSGEHLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQIVGMF 775 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A +K + R + +P+I+ AD + ++QI +N+L NA+ FT GG + + Sbjct: 776 APQAEQKGLHFRFDKSGRLPQIVHADQKRLRQILINLLGNAVKFTDHGG--VTLRLRYAR 833 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E V DTG+G+ + + E+ PF + + GTGLGL +++ +V G+ + Sbjct: 834 EIAYFDVIDTGIGIADDDRERIFLPFERSSAANLREDIGTGLGLAISRMLVHIMGGELSV 893 Query: 795 FSTPAKGT 802 S +G+ Sbjct: 894 QSQVGQGS 901 >gi|83765603|dbj|BAE55746.1| unnamed protein product [Aspergillus oryzae] Length = 2341 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 84/281 (29%), Positives = 140/281 (49%), Gaps = 29/281 (10%) Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAK------KIAEKESSH-----------KSDFLA 590 L F ++ + S + +K L+ A+ K+AE E+ H KS FLA Sbjct: 1838 LLFREVRKVSATNASMVEAQKRALAQAREAEQKAKVAEAEAKHNVKLKEDAAKAKSIFLA 1897 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SH++RTP+ +IG SE++K + + EY I + +L ++ND+LD SK+ Sbjct: 1898 NISHDLRTPMNGVIGLSELLKATKL----DKEQDEYVESIRVCADTLLTLINDILDFSKL 1953 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP---RILADLRSVKQI 707 E+GKM + P+++ E +SE + ++ Y + R L +P +L D + QI Sbjct: 1954 EAGKMKISTVPLNIKETISEVVRALR-YTHRDRGLETIEDLEKVPPDLVVLGDPVRLHQI 2012 Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTGVGMTNYELEKAMKPFGQIP 764 +N+LSN+ FTP G + + + I V DTG+G+ + + +PF Q Sbjct: 2013 FMNLLSNSYKFTPKGSVTVRARVTREGKGRIRLECSVSDTGIGIPEEQKSRLFRPFSQAD 2072 Query: 765 NSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLI 804 +S G+GLGL + KA++ D G ++ STP GT + Sbjct: 2073 SSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVGTTV 2113 >gi|262374290|ref|ZP_06067566.1| sensor protein gacS [Acinetobacter junii SH205] gi|262310848|gb|EEY91936.1| sensor protein gacS [Acinetobacter junii SH205] Length = 936 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 93/284 (32%), Positives = 154/284 (54%), Gaps = 26/284 (9%) Query: 526 EKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLS----------- 572 + I + ST E +LL I ++K+L FS L + + +E +E + + Sbjct: 219 QHIVVNSTGELRLLQRDIANVVKRLHFSF---LELKEHTEQTEEDLRRTLDTLEVQNITY 275 Query: 573 -HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 A+ A + KS FLA +SHE+RTPL +I GF ++ Q+ L N + + Y I Sbjct: 276 RQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLSNEQNL-YLQTIR 332 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 +S +L ++ND+LD SKI++GK+ L P L+EA+ + + ++ A +K I + +A Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINMAFYYA 392 Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--EVILR--VRDTGV 746 NIP+ ++ D KQI N++SNAI FTP G+II+ +E + +L V+D+G+ Sbjct: 393 ENIPQHVVGDALRFKQILTNLISNAIKFTPD-GEIIVRVRMEDDEIGQCLLHFSVQDSGI 451 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 G++ + +K + F Q S + GTGLGL ++K +V G Sbjct: 452 GLSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMHG 495 >gi|254694720|ref|ZP_05156548.1| histidine kinase [Brucella abortus bv. 3 str. Tulya] Length = 859 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 140/254 (55%), Gaps = 4/254 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT D+++ + + L + E K+DF+ VS+E+R+PLT IIGF+E+++ F Sbjct: 599 LTFIDVTDTVRVERALKEKNEALEFADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAF 658 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L N R +EY ++I S +++L IVND+LD++ +++G M L VS+ EA+S A S V Sbjct: 659 GSL-NERQLEYLDHISTSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRV 717 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + I + A+++ AD V+Q+ N+LSNA+++ P G I++ Sbjct: 718 SERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVAR-DGA 776 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +V+ V D G GM + L+ K F PN + G GLGL + K+ V+ + G+ I Sbjct: 777 DVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRR--RGAGLGLAIVKSFVELHGGRVEID 834 Query: 796 STPAKGTLIEIIFP 809 + +GT + FP Sbjct: 835 TGEERGTTVICRFP 848 >gi|161506706|ref|YP_001576656.1| putative histidine kinase [Lactobacillus helveticus DPC 4571] gi|160347695|gb|ABX26369.1| putative histidine kinase [Lactobacillus helveticus DPC 4571] Length = 618 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 101/382 (26%), Positives = 183/382 (47%), Gaps = 42/382 (10%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E +L S+L SDG+ +R G + N ++I+ +P L Sbjct: 261 ERRRLDSVLSHMSDGVLATDRHGNVSVVNHMALSYLNADEDEIINRPIAEVLG------- 313 Query: 510 NHYLTEILSLDLRQTLEKITLG---STKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEW 564 L + S DL + ++I + T++E +L S +I + F S +HD++E Sbjct: 314 ---LKDTSSQDLISSQKEIVVTVKPGTRDEIILHASFSLIKRVTGFVSGSVCVLHDVTE- 369 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGNPRY 623 Q+KN+ S + F++ VSHE+RTPLT++ + E + + P P++ Sbjct: 370 -QQKNENSQRQ------------FVSNVSHELRTPLTSLQAYIEALNEGAWKDPEIAPKF 416 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY----- 678 +E + + ++ ++NDLL +S+++ G + E V+ ++ VS ++ + Sbjct: 417 LEVTQ---QETSRMIRMINDLLSLSRMDRGVSKMDLEFVNFNDFVSHILNRFDMIVKTDK 473 Query: 679 --ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 ++K+ I+ N + D + Q+ NI++NAI ++P GG I + TH S Sbjct: 474 NKGHKKKYTIKRELGNQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTH-SQGH 532 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 VIL + D G+G+ +L K F ++ ++ GTGLGL +AK +V+A+ G+ + S Sbjct: 533 VILSISDQGLGIPRKDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRVWADS 592 Query: 797 TPAKGTLIEIIFPLYDTSHPHD 818 + KG+ I P Y+T D Sbjct: 593 SEGKGSTFYISLP-YETMTEED 613 >gi|53712464|ref|YP_098456.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52215329|dbj|BAD47922.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 637 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 92/268 (34%), Positives = 133/268 (49%), Gaps = 24/268 (8%) Query: 549 PFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 PF L + HDI + + +L AK+ AE+ KS FLA +SHEIRTPL AI+GFS Sbjct: 247 PFEGNKVLALIHDIGDRMRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFS 306 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 E+I EY I ++ NL+L ++ND+LD+S+IESGK +H + Sbjct: 307 EIIALTE----DEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQ------- 355 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR------ILADLRSVKQIALNILSNAIHFTPS 721 ++E LV R+ ++ N+ R IL D V Q+ N LSNAI T Sbjct: 356 LTEMSGLVDEVDKVHRLKMKKGVKLNVIRPSEEIWILTDRNRVTQVLFNFLSNAIKNTIE 415 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 G I E V L V DTG G++ +L F ++ + Q GTGLGLP+ Sbjct: 416 GS--ITFGLVKEEEWVKLYVTDTGCGISKEKLPLIFTRFEKLNDFVQ----GTGLGLPIC 469 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K++V+ G+ + S +G+ + P Sbjct: 470 KSIVERLGGRIEVESELGQGSTFILYLP 497 >gi|295688464|ref|YP_003592157.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] gi|295430367|gb|ADG09539.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] Length = 696 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 122/235 (51%), Gaps = 11/235 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K+DFLA +SHEIRTPL +IG + + PR E + I RSG + +V+D+ Sbjct: 321 KNDFLANMSHEIRTPLNGVIGIAAALGETAL----TPRQAEMVDLIRRSGETLERLVSDI 376 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703 LD+SKIE+G+M + + LD + + + +L A EK + +R ++ L D Sbjct: 377 LDVSKIEAGQMTIQTQAFDLDGVLDGLLDVTRLRAKEKGVGVRVERGPSVSGGFLGDSVR 436 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMK 758 + Q+ N++SNA+ FT G++ + ++ + + V DTGVG + E + Sbjct: 437 IGQVLSNLMSNAVKFTDR-GEVTVRIDVEDRDDGQASLLCVEVEDTGVGFDAAKGEMIFQ 495 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 F Q ++ R G+GLGL +++ +V+ G S P G+L ++ PL+ T Sbjct: 496 RFSQADSTITRRFGGSGLGLSISRTLVEMMGGAITARSKPGSGSLFRVVLPLHRT 550 >gi|254482907|ref|ZP_05096143.1| response regulator receiver domain protein [marine gamma proteobacterium HTCC2148] gi|214036779|gb|EEB77450.1| response regulator receiver domain protein [marine gamma proteobacterium HTCC2148] Length = 998 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 130/222 (58%), Gaps = 8/222 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FL+ +SHEIRTP+ +IG +E+++ L N + EY + I +S + +L ++ND+ Sbjct: 352 KSRFLSAMSHEIRTPMNGVIGMAELLEGT---DLTNQQG-EYVSLIIKSADTLLGLINDI 407 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703 LD SKIE+G+++L P +L + + + + + L ANEK I + +IP +++ D Sbjct: 408 LDFSKIEAGRLDLEHIPFNLRDILGDTLQTLALRANEKDIELTFHIPPDIPDKLIGDPLR 467 Query: 704 VKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 ++Q+ +N++ NAI FT G +++ + S+ +++ VRD+G+G+++ + K K F Sbjct: 468 LRQVIVNLVGNAIKFTEVGEVAVDLLLQSISDSDIQLVFEVRDSGIGISDAQQSKVFKAF 527 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 Q S + GTGLGL +A+ + + G + S +G+ Sbjct: 528 DQADTSTTRQFGGTGLGLAIARQLTEMMGGTMAVRSKLNEGS 569 >gi|120601171|ref|YP_965571.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] gi|120561400|gb|ABM27144.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] Length = 839 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/258 (28%), Positives = 135/258 (52%), Gaps = 9/258 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K+ +L A+ AE + KS+FLA +SHE+RTPL ++G +++ P G Sbjct: 412 DVTERKRVLAELRTARDAAEAANKAKSEFLAHMSHELRTPLNGVMGMLQLLDEHVAAPQG 471 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + S +L I++D+LD+S+IE+G+++L EP + + ++ + + Sbjct: 472 R----AWLDVALESSRALLRILSDILDLSRIEAGRLDLMQEPFTPESVLAPVLVSLHRTV 527 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + + I +++P +L D ++Q+ LN+L NA +T G + N + + Sbjct: 528 EGRAVRIVNEMDDSMPPVLVGDPGRIRQVLLNLLGNAAKYTERGEVRVGMRVLRRNGKAL 587 Query: 739 ---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 L V DTGVG+ + +L++A++PFG++ + G GLGLP+ +V G I Sbjct: 588 RVHLHVTDTGVGIADEQLQRALEPFGRLRQGSGLP-RGVGLGLPIVVRLVRLMGGTLCIA 646 Query: 796 STPAKGTLIEIIFPLYDT 813 S GT + + PL + Sbjct: 647 SEQGVGTEVHVTLPLLEA 664 >gi|27366581|ref|NP_762108.1| TMAO reductase sytem sensor TorS [Vibrio vulnificus CMCP6] gi|27358147|gb|AAO07098.1| TMAO reductase sytem sensor TorS [Vibrio vulnificus CMCP6] Length = 970 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 128/255 (50%), Gaps = 11/255 (4%) Query: 571 LSHAKK--IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 L+HAK +AE+ + KS FLA +SHEIRTP+ ++G + ++ + PL YA+ Sbjct: 455 LNHAKARSLAEQANRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPLQK----RYAD 510 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RSG +L I+ND+LD SKIE+G + + L + V + L+Q A EK + Sbjct: 511 IINRSGKNLLAILNDVLDYSKIEAGHLEIRESAFELHQMVEDTFQLMQSRAAEKSLTFSY 570 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGV 746 +++ D+ + Q+ N++ NAI FT G I + E V+ V DTG+ Sbjct: 571 HIESDVNHYWRGDVTRISQVLNNLVGNAIKFTHQGAVDIYVSLDLEQENVVQFEVTDTGI 630 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ E F Q Q+ G GTGLGL +++ ++ A G+ + S +G+ Sbjct: 631 GIAQQEQATLFDAFTQASGGQKAAG-GTGLGLAISRRIIQAMGGQMEMASEEGEGSRFWF 689 Query: 807 IFPL--YDTSHPHDC 819 PL D P C Sbjct: 690 TVPLTPCDAVEPVVC 704 >gi|332995263|gb|AEF05318.1| GAF sensor hybrid histidine kinase [Alteromonas sp. SN2] Length = 695 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 87/249 (34%), Positives = 128/249 (51%), Gaps = 10/249 (4%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+E L IAE+ +S+FLA +SHEIRTP+ + G E + + Sbjct: 284 RDITERFNTTQSLKQKTAIAEQALKARSEFLANMSHEIRTPIHGVQGMLETLCSTSL--- 340 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N + EY + RS +L+IVND+LD SKI+SG M EPV+ E + + I + + Sbjct: 341 -NEKQKEYTHVAMRSAESLLNIVNDILDFSKIDSGHMTYDVEPVNFKELIEQQIPMFRRL 399 Query: 679 ANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----S 733 A++K I I + A + LAD + QI +N+++NA+ FT G I IST T Sbjct: 400 ADKKGIEFITETAAVSDTLFLADSLRLSQILMNLMNNAVKFTDK-GSIKISTRCTKYGAG 458 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 V L V DTG+G+++ + + PF Q S Q R GTGLGL + +V+ G Sbjct: 459 RFRVKLIVTDTGIGISDEQQKVIFSPFLQAEESTQRRFGGTGLGLAIVNNIVEHYDGNVE 518 Query: 794 IFSTPAKGT 802 + S +G Sbjct: 519 VSSAIGEGA 527 >gi|238483285|ref|XP_002372881.1| sensor histidine kinase/response regulator, putative [Aspergillus flavus NRRL3357] gi|220700931|gb|EED57269.1| sensor histidine kinase/response regulator, putative [Aspergillus flavus NRRL3357] Length = 2341 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 84/281 (29%), Positives = 140/281 (49%), Gaps = 29/281 (10%) Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAK------KIAEKESSH-----------KSDFLA 590 L F ++ + S + +K L+ A+ K+AE E+ H KS FLA Sbjct: 1838 LLFREVRKVSATNASMVEAQKRALAQAREAEQKAKVAEAEAKHNVKLKEDAAKAKSIFLA 1897 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SH++RTP+ +IG SE++K + + EY I + +L ++ND+LD SK+ Sbjct: 1898 NISHDLRTPMNGVIGLSELLKATKL----DKEQDEYVESIRVCADTLLTLINDILDFSKL 1953 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP---RILADLRSVKQI 707 E+GKM + P+++ E +SE + ++ Y + R L +P +L D + QI Sbjct: 1954 EAGKMKISTVPLNIKETISEVVRALR-YTHRDRGLETIEDLEKVPPDLVVLGDPVRLHQI 2012 Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTGVGMTNYELEKAMKPFGQIP 764 +N+LSN+ FTP G + + + I V DTG+G+ + + +PF Q Sbjct: 2013 FMNLLSNSYKFTPKGSVTVRARVTREGKGRIRLECSVSDTGIGIPEEQKSRLFRPFSQAD 2072 Query: 765 NSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLI 804 +S G+GLGL + KA++ D G ++ STP GT + Sbjct: 2073 SSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVGTTV 2113 >gi|124007456|ref|ZP_01692162.1| sensory transduction histidine kinase [Microscilla marina ATCC 23134] gi|123987112|gb|EAY26861.1| sensory transduction histidine kinase [Microscilla marina ATCC 23134] Length = 1248 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 89/262 (33%), Positives = 147/262 (56%), Gaps = 21/262 (8%) Query: 555 SLTMHDISEWKQEKNKLSHAKKI------AEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 S T +S +++E+ +L+ K + A++ S KS+FLA +SHEIRTPL ++GF + Sbjct: 708 STTSRLLSAYRKEQERLALMKALQKTTLEAQQASVAKSEFLANMSHEIRTPLNGVVGFVD 767 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA- 667 ++ + +Y + + +SGN +L+I+ND+LD SKIE+GKM L PV +D A Sbjct: 768 LLLQTNL----DATQKQYLDIVSQSGNTLLEIINDILDFSKIEAGKMELL--PVKVDLAQ 821 Query: 668 VSEAISLVQLYANEKRIL-IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI 725 + + + + +Y +++ L + S A ++P+ D +KQ+ N+LSNA+ FT S G I Sbjct: 822 MCDGLRDLMIYQTKQKGLEMILSLAGDLPQYAWFDEMRLKQVLTNLLSNAVKFT-SKGTI 880 Query: 726 IISTTHT---SNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 T SN++ +LR V+DTGVG+ +K + F Q S R GTGLGL + Sbjct: 881 EFKVTMLQKESNQKALLRFLVKDTGVGILPENQQKIFEAFLQEDTSTTKRFGGTGLGLSI 940 Query: 781 AKAMVDANMGKFYIFSTPAKGT 802 + ++ + + ST KG+ Sbjct: 941 SNRLLALMDSRLCLESTHGKGS 962 >gi|83945039|ref|ZP_00957405.1| sensor histidine kinase/response regulator [Oceanicaulis alexandrii HTCC2633] gi|83851821|gb|EAP89676.1| sensor histidine kinase/response regulator [Oceanicaulis alexandrii HTCC2633] Length = 614 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/259 (28%), Positives = 137/259 (52%), Gaps = 15/259 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D+SE ++E+ + S A + KS F A V+HE+RTPL+ +G + ++K+ Sbjct: 103 RDVSEERRERAEASEAAQ-------GKSVFFASVTHELRTPLSGALGAAALLKDSGL--- 152 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 +P Y + S L++++D+LD+S++E+G++ L EPV L + +A ++ Sbjct: 153 -HPDQAAYLEAVRSSAQHALNLIDDILDLSRLEAGRLTLRAEPVDLRALIEDACEILATR 211 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A EK + + + ++++P I AD ++QI N+ NA+ FT +GG I+ ++ H + E+ Sbjct: 212 AAEKGLALAHAISSDVPAEIRADPARLRQILFNLGGNAVKFTETGGVIVQASYH--DGEL 269 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 L +DTG G++ + K F + ++ G GLGL + K + +A G+ + S Sbjct: 270 SLIFKDTGPGISKTDQSTLFKHF-ERGAAEHNATPGAGLGLAMVKRLAEAMEGEVGVSSE 328 Query: 798 PAKGTLIEIIFPLYDTSHP 816 P +G FP + P Sbjct: 329 PGQGATFWTRFPALALAPP 347 >gi|328952553|ref|YP_004369887.1| multi-sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452877|gb|AEB08706.1| multi-sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 501 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 136/238 (57%), Gaps = 6/238 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG-NPRYIEYANYIDRSGNLVLDIVND 643 K++F+ VSHE+R PL+AI VI + G L R + + G +LD++N+ Sbjct: 266 KNEFVQMVSHELRAPLSAIKMQHTVILDGLAGDLTEKQRELLVRAHAKIQG--LLDLINE 323 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 LL+++++E+G L P+SL +++ + L+Q A ++I+++ ++P I AD RS Sbjct: 324 LLNVARMEAGYCQLEQVPLSLGGVLTDLVELLQTKAANQKIVLQLITPPDLPLIQADRRS 383 Query: 704 VKQIALNILSNAIHFTPSGGQIIIS-TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 ++++ +N+L NAI+++P+GG + IS +H+ EV+ V DTGVG+ E+ K F + Sbjct: 384 MEEVFMNLLCNAINYSPNGGNVKISAVSHSEYLEVL--VSDTGVGLEPEEIPKIFDKFYR 441 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 + Q + GTGLGL + K +++A+ G + S P GT ++ P + D + Sbjct: 442 AKHPQTRQVIGTGLGLAIVKNLIEAHRGSIQVESQPGVGTTFRVLLPTVSSGQGSDFV 499 >gi|260777827|ref|ZP_05886720.1| hypothetical protein VIC_003224 [Vibrio coralliilyticus ATCC BAA-450] gi|260605840|gb|EEX32125.1| hypothetical protein VIC_003224 [Vibrio coralliilyticus ATCC BAA-450] Length = 1057 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 100/382 (26%), Positives = 191/382 (50%), Gaps = 15/382 (3%) Query: 432 GIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 I E ++ I +R +++ + S I+E + I++ I+ N+ + +GY V Sbjct: 141 AIHQEGLEEEIERRTRDLQASEALSRTIIEGAPSSVVILDAHKKIVLWNKTAIETYGYSV 200 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS---TKEEKLLSLRIIIK 546 E+ + L P ++ L++ ++++ + + T+E+K + + + + Sbjct: 201 EEATGQNLFELLRAELPLELSELLSQDITIEDQDKVSGAFFEVQTYTREDKPIPIDLGMT 260 Query: 547 KLPFSS-C-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 F C ++ + D++ KQ +++L+ A+ AE+ KS FLA +SHEIRTP+ AII Sbjct: 261 VFLFDDECRIAMFLRDVTSRKQVEDELNEARAKAEEAVEIKSMFLANMSHEIRTPMNAII 320 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G S + P+ +Y + I S +L+L I+ND+LD SKIE+GK+++ L Sbjct: 321 GMSHLALKTDL----TPKQHDYISKIHNSASLLLGIINDILDFSKIEAGKLSIEEIEFYL 376 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG 723 D+ + + A EK + + ++P+ L D + QI +N+++NA+ FT G Sbjct: 377 DDVLHNVSMVTGQKAFEKGLELLFDIPRDVPKTLYGDPLRLGQIIINLVNNAVKFTEQGE 436 Query: 724 -QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 + + + ++++ L V+DTG+GM+ + K F Q S + GTGLGL + Sbjct: 437 ISVSVKVIRSLDDKIELGFSVKDTGIGMSEEQSSKLFNAFTQADGSTTRKYGGTGLGLSI 496 Query: 781 AKAMVDANMGKFYIFSTPAKGT 802 + +V+ G+ + S G+ Sbjct: 497 CRRLVELMGGEISVDSELNVGS 518 >gi|288942314|ref|YP_003444554.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897686|gb|ADC63522.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 894 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/242 (33%), Positives = 133/242 (54%), Gaps = 16/242 (6%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 + L+ A+ AE + KSDFLA +SHEIRTP+ A++G +E++ + + +A Sbjct: 357 DALAEARDHAEAANRAKSDFLATMSHEIRTPMNAVLGMAELLLATDL----DAQQQRFAQ 412 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRIL 685 I RSG +LDI+ND+LD+SKIE+GK+ L F+P L E ++ S A+ K + Sbjct: 413 TIHRSGGALLDIINDILDVSKIEAGKLTLAPHDFDPRLLIEETAQTFS---ESASAKGLR 469 Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--SNEEVIL--R 740 + ++P ++ D ++QI N++ NA+ FT G+I +S + T ++E + L Sbjct: 470 LTVRLPRDLPGLVHGDSTRLRQILFNLIGNALKFTEH-GEIRVSASLTIHADERMTLAIE 528 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 VRDTG G+ + + F Q S R GTGLGL +++ + G + STP + Sbjct: 529 VRDTGSGIAPEFQAEIFEAFAQGDGSTTRRHGGTGLGLAISQRLAHLMDGSIRVESTPGQ 588 Query: 801 GT 802 G+ Sbjct: 589 GS 590 >gi|189424026|ref|YP_001951203.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189420285|gb|ACD94683.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1245 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 128/245 (52%), Gaps = 11/245 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K +L A+ A+ KS+FLA +SHEIRTP+ A+IG + +P+ Sbjct: 571 KTRTAELEAARDSAQAADQAKSEFLANMSHEIRTPMNAVIGMIHLTLKTEM----SPKQR 626 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +Y + + +L I++D+LD SK+E+GK+ L L E + S+V + A+EK + Sbjct: 627 DYLRKAGFAADSLLGIIDDILDFSKVEAGKLELEQHQFLLSEVLDTVTSIVGIKAHEKGL 686 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVILR 740 A +P +++ D + QI +N+ +NA+ FT G +I + N V+LR Sbjct: 687 EFLLKIAPEVPAQLIGDPLRLGQILINLCNNAVKFTGQG-EIFVFIEQLDCRENNRVMLR 745 Query: 741 --VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 VRD G+GMT +L+K PF Q S R GTGLGL ++K +V G+ S P Sbjct: 746 FSVRDNGIGMTPEQLDKLFTPFTQADASSTRRFGGTGLGLAISKQLVLLMGGEIGAESIP 805 Query: 799 AKGTL 803 KG++ Sbjct: 806 DKGSV 810 >gi|189423636|ref|YP_001950813.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419895|gb|ACD94293.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 947 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 99/371 (26%), Positives = 181/371 (48%), Gaps = 24/371 (6%) Query: 456 SILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYL 513 +I AT+D I I++ ++G+I+ N+ +LFG P D++ P Q +P + Sbjct: 438 TIFNATNDVIFIMDAQQGMIIDCNKQAVQLFGRPRVDLIGSNPV-----QLSPPDHPDFG 492 Query: 514 TEILSLDLRQTLEKIT-----LGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQ 566 E + +R +E+ L + + + ++ + L + DISE KQ Sbjct: 493 FEQAAAHIRSAIEEGAQLFEWLCARPDGSTFWAEVSLRAAEINGRQRLLAVVRDISERKQ 552 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 +L A+ A + ++ K++FLA +SHE+RTPL I+G S++++ Y Sbjct: 553 SMQELQQARDAALQATTAKNEFLANMSHEVRTPLNGIMGLSQLLRTTSL----TEEQAGY 608 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + +D S +L ++ND+LDIS+IE+G + + S + + E + + A EK I + Sbjct: 609 MDMLDSSARNLLVLINDILDISRIEAGSLTIRQTAFSPAKLLREVAGMYEKAAAEKGIGL 668 Query: 687 RTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVIL--RVR 742 + +P ++ D ++Q+ +N++ NAI FT GG + + S + L V Sbjct: 669 DILPCDELPAALIGDPLRLRQVLINLVGNAIKFTSHGGVTLRVDCLEESATGIRLGFEVS 728 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D+G+GM+ L+K PF Q S G+GLGL + + + + G S+ +G+ Sbjct: 729 DSGIGMSAETLQKIFHPFTQADASTSRVHGGSGLGLAICRRLSELMGGSIRAESSLGQGS 788 Query: 803 --LIEIIFPLY 811 ++E+ F Y Sbjct: 789 RFIVELPFGRY 799 >gi|332534764|ref|ZP_08410591.1| signal transduction histidine kinase [Pseudoalteromonas haloplanktis ANT/505] gi|332035788|gb|EGI72273.1| signal transduction histidine kinase [Pseudoalteromonas haloplanktis ANT/505] Length = 975 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/254 (31%), Positives = 136/254 (53%), Gaps = 10/254 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K+ + KL AK AE+ + K F+A +SHEIRTP+ +IIGFS+++ + PL Sbjct: 379 DITERKEYEEKLEQAKFKAEEAAHAKQSFMANMSHEIRTPMNSIIGFSDLLMDT---PLD 435 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV--SLDEAVSEAISLVQL 677 + ++ ++ + +L ++N++LD +K+E GK+ + EPV SL + IS L Sbjct: 436 QEQQ-KHLVTVNNAARSLLRLLNEILDSAKLERGKLTI--EPVHFSLKPVIDSIISTFWL 492 Query: 678 YANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A +K + ++ ++ D ++Q+ N++ NAI FT G + ++ T N+ Sbjct: 493 EAKKKDLELKLHIKESVSSTYYGDPDRLRQVLTNLIGNAIKFTEEGS-VTVTVGMTQNQH 551 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + V+DTG+G+ ++ +PF Q + R GTGLG ++K +V+ G + S Sbjct: 552 LFFEVQDTGIGIAKDRIQAVFQPFEQADGTTTRRFGGTGLGTTISKQLVELMGGTINLVS 611 Query: 797 TPAKGTLIEIIFPL 810 KGT PL Sbjct: 612 ELGKGTCFYFSLPL 625 Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 36/69 (52%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L +IL DGI I+ GIILS N A SK+FG+ + K + ++ N + Y Sbjct: 137 RLNAILGTAIDGIVTIDHTGIILSFNEAASKIFGWQENQVQGKNVKMLMDDNIAKHHDEY 196 Query: 513 LTEILSLDL 521 L ++DL Sbjct: 197 LLNAHNVDL 205 >gi|320158468|ref|YP_004190846.1| sensor protein torS [Vibrio vulnificus MO6-24/O] gi|319933780|gb|ADV88643.1| sensor protein torS [Vibrio vulnificus MO6-24/O] Length = 970 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 128/255 (50%), Gaps = 11/255 (4%) Query: 571 LSHAKK--IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 L+HAK +AE+ + KS FLA +SHEIRTP+ ++G + ++ + PL YA+ Sbjct: 455 LNHAKARSLAEQANRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPLQK----RYAD 510 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RSG +L I+ND+LD SKIE+G + + L + V + L+Q A EK + Sbjct: 511 IINRSGKNLLAILNDVLDYSKIEAGHLEIRESAFELHQMVEDTFQLMQSRAAEKSLTFSY 570 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGV 746 +++ D+ + Q+ N++ NAI FT G I + E V+ V DTG+ Sbjct: 571 HIESDVNHYWRGDVTRISQVLNNLVGNAIKFTHQGAVDIYVSLDLEQENVVQFEVTDTGI 630 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ E F Q Q+ G GTGLGL +++ ++ A G+ + S +G+ Sbjct: 631 GIAQQEQATLFDAFTQASGGQKAAG-GTGLGLAISRRIIQAMGGQMEMASEEGEGSRFWF 689 Query: 807 IFPL--YDTSHPHDC 819 PL D P C Sbjct: 690 TVPLTPCDAVEPVVC 704 >gi|300856171|ref|YP_003781155.1| putative sensor histidine kinase/response regulator hybrid [Clostridium ljungdahlii DSM 13528] gi|300436286|gb|ADK16053.1| putative sensor histidine kinase/response regulator hybrid [Clostridium ljungdahlii DSM 13528] Length = 949 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 135/251 (53%), Gaps = 8/251 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+E + + +L AK+ AE + KS FLA +SHEIRTP+ I GF +++++ Sbjct: 299 TAEDITEQRLAERELYKAKEQAEAANIAKSQFLANMSHEIRTPMNGIFGFLDLLQSTNL- 357 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L +I A + ++L I+ND+LD SKIE+ K+ + +L + +A+SL+ Sbjct: 358 SLEQKDFIREAK---SASKVLLYIINDILDFSKIEAKKLTMEKIRFNLRNTIEDAVSLLV 414 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 A EK + + T + +P ++ D ++QI N++SNA+ FT G + + N Sbjct: 415 PKAVEKGLELYTMISEGVPEEVVGDPSRLRQILNNLISNAVKFTNKGEISVTVDCLKEEN 474 Query: 735 EEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 E +L V+DTG+G+ ++ K F Q S + GTGLGL ++ +V G+ Sbjct: 475 ETAVLNFEVKDTGIGIRKDHIDNIFKSFSQADTSTTRKYGGTGLGLAISSELVKMMGGEI 534 Query: 793 YIFSTPAKGTL 803 ++ S KG++ Sbjct: 535 HVESIFGKGSI 545 >gi|317154359|ref|YP_004122407.1| ATPase ATP-binding domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316944610|gb|ADU63661.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 764 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 133/240 (55%), Gaps = 6/240 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ + +L+ AK+ AE K+DFLA +SHEIRTP+ I+G ++++ P+ +YI Sbjct: 368 RETERELALAKERAEAADRAKTDFLAGMSHEIRTPMNTILGMADLMLETDPTPV-QRQYI 426 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E SG ++L I+ND+LD+SKIE+G++ L PV + + ++ +V A +K + Sbjct: 427 EV---FQSSGAMLLGIINDVLDLSKIEAGEVRLETVPVDMADFLNRTREIVAGRAAQKGL 483 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVR 742 R A++ P R L D ++Q+ +N++ N I FT SG ++ + + V Sbjct: 484 AFRIEQADHAPRRFLGDPVRLRQVLVNLIDNGIKFTESGTVRLAVGQAADPPGRLTFAVT 543 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ E+ + F Q S + GTGLGL +++ +V+ G+ + S P +G+ Sbjct: 544 DTGIGIAPESQEQIFQRFTQADASTTRKYGGTGLGLAISRRLVELMGGEIRLESAPGQGS 603 >gi|254416315|ref|ZP_05030069.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196176997|gb|EDX72007.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1474 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/252 (32%), Positives = 139/252 (55%), Gaps = 15/252 (5%) Query: 561 ISEWKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 IS+ EKN L A++ AE + KS+FLA +SHE+RTPL I+G+ +V+K + P Sbjct: 974 ISQQLAEKNLHLEQARQEAETANHAKSEFLANMSHELRTPLNGILGYVQVLKRE---PHP 1030 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + + I + G +L ++ND+LD+SKIE+ KM+L + I +V++ A Sbjct: 1031 TAKQQQGLSIIQQCGEHLLTLLNDILDLSKIEARKMDLCLSEFQFPHFLEGIIEMVRIRA 1090 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 +EK I + +P+I+ D + ++Q+ +N+L NAI FT G I +TS + Sbjct: 1091 DEKAIAFHYQPLSPLPKIVRGDEKRLRQVLINLLGNAIKFTDQGS-ITFKVGYTSAQAPA 1149 Query: 737 ------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + ++ DTG+G+ +L PF QI + + + EGTGLGL +++ +V G Sbjct: 1150 TEASNTMRFQIEDTGIGIAAEQLNDIFLPFHQIGDRNR-QVEGTGLGLAISQRLVQLLGG 1208 Query: 791 KFYIFSTPAKGT 802 + ++ S +G+ Sbjct: 1209 ELHVESNVGQGS 1220 >gi|167772720|ref|ZP_02444773.1| hypothetical protein ANACOL_04102 [Anaerotruncus colihominis DSM 17241] gi|167665198|gb|EDS09328.1| hypothetical protein ANACOL_04102 [Anaerotruncus colihominis DSM 17241] Length = 1108 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 87/265 (32%), Positives = 131/265 (49%), Gaps = 14/265 (5%) Query: 556 LTMHDISEWKQE----KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 L M DI + ++E K L A +A + KSDF++R+SH+IRTP+ AIIG + + Sbjct: 560 LYMRDIDQTRREDERNKRALQDALVLARDANRAKSDFISRMSHDIRTPMNAIIGMTAIAA 619 Query: 612 NQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 LGN I + I S +L ++ND+LD+SKIESGK+ + + + Sbjct: 620 ----ANLGNEAKISDCLQKIGVSAKFLLSLINDILDMSKIESGKVVIAQCEFNFHRMIQG 675 Query: 671 AISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 S+ A +K + N P D + QI +N+LSNAI FTP GG++ + Sbjct: 676 ISSVFGQQAAQKHLAFNVYLEENFPLTCTGDELRINQILMNLLSNAIKFTPEGGRVSLRI 735 Query: 730 THTSNEEVILRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 +E I VR DTGVG++ ++ PF Q EGTGLG+ + + +V Sbjct: 736 ERKKAKEHITLVRFEVADTGVGISPEFQKRIFDPFEQESAGSGRVFEGTGLGMTITQNLV 795 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810 G+ + S P KG+ + PL Sbjct: 796 ALMDGRISLESEPGKGSRFIVELPL 820 >gi|124005780|ref|ZP_01690619.1| two-component hybrid sensor and regulator [Microscilla marina ATCC 23134] gi|123988848|gb|EAY28454.1| two-component hybrid sensor and regulator [Microscilla marina ATCC 23134] Length = 662 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 126/236 (53%), Gaps = 15/236 (6%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+F A +SHE+RTPL IIG ++++ + NP + +Y I SGN ++ IVND+ Sbjct: 162 KSNFFAEISHELRTPLNGIIGLTDLL----LEVMTNPHHADYLKAIQSSGNHLVTIVNDV 217 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703 LD+SKIESG+M ++L E + + + +K I + T A ++P +L D Sbjct: 218 LDMSKIESGQMQFEETHINLPEMLQNIVLSFKQKFMQKGIQVNTVLATDVPEEVLGDKVR 277 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTS-------NEEVILR--VRDTGVGMTNYELE 754 + QI N++ NAI FT S G++ I T + E++ L V+D+G+G+ L+ Sbjct: 278 LTQILYNLVGNAIKFT-SEGEVSIEITFVAPVPSADQAEQIQLDFIVKDSGIGIKKERLQ 336 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + +P+ Q GTGLGL + + +++ G + S +GT+ + PL Sbjct: 337 QIFEPYQQASKQTTRLYGGTGLGLSIVRQLIELQGGHISVNSRWGEGTIFNFVLPL 392 >gi|95931145|ref|ZP_01313869.1| periplasmic sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95132792|gb|EAT14467.1| periplasmic sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 798 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/246 (32%), Positives = 131/246 (53%), Gaps = 10/246 (4%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ S+ KS FLA +SHEIRTP+ ++G +E + ++ + + E Sbjct: 284 QELDDAKKAAQEASAAKSRFLANMSHEIRTPMIGVLGMAEQLMSRDL----DDQDAELVK 339 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I SG + I+NDLLDISKIE+GK+ L + E + +A+ L+ A +K + + T Sbjct: 340 TIYSSGESLQAILNDLLDISKIEAGKLELDLHQFTPIETLDQAVELLADNAFKKGLELTT 399 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVILRVRD 743 +P L D ++QI LN+LSNAI FT G I++ T+T++ +I+ V+D Sbjct: 400 VTHTAVPSTLTGDAGRLRQIILNLLSNAIKFT-GDGHIVVDMNWLPTNTTSGNLIVSVKD 458 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G+G+ + F Q +S + GTGLGL + K +V G + G++ Sbjct: 459 SGIGLDDAAKNNIFTAFTQADSSTSRKYGGTGLGLTIVKQLVGLMDGDISVRDNEDHGSI 518 Query: 804 IEIIFP 809 + P Sbjct: 519 FTVTIP 524 >gi|290998730|ref|XP_002681933.1| histidine kinase-like ATPase protein [Naegleria gruberi] gi|284095559|gb|EFC49189.1| histidine kinase-like ATPase protein [Naegleria gruberi] Length = 701 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 109/372 (29%), Positives = 183/372 (49%), Gaps = 57/372 (15%) Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 N AV KL G ++D+++ PF +Q + H IL L ++ + I S K Sbjct: 140 NSAVLKL-GEVLQDVIQSPF----DQTSKQTPTH--ERILPLFVKGKNQTILTCSLSISK 192 Query: 538 LLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 +L I + + F +++ +HDI++ + ++++ K+ A + + KS FLA++SHE Sbjct: 193 ILLYDIDSAGEGMVF---FNIILHDITQKYKLLDEINVEKEKAIEANKAKSQFLAQMSHE 249 Query: 596 IRTPLTAIIGFSEVI--------KNQR----FGPLGN---------------------PR 622 +RTPL IIG ++V+ +N++ F N P Sbjct: 250 LRTPLHGIIGLTDVLLSKCKEETENEKNLDTFDKAVNLNNICKDSATIAFVESEKSHSPV 309 Query: 623 YIEYANYIDR---SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA-ISLVQLY 678 + N I SGN++L ++NDLLDI KIES K+ L + +L A+ + + QL Sbjct: 310 LEQQTNIIQTIRYSGNILLGLINDLLDICKIESSKIKLENKKFNLRRAIDQIHCGMFQLQ 369 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-- 735 A EK + N+P I+ D + QI +N++ NAI FT G +I + +E Sbjct: 370 AREKSLEFNLQLGENVPTFIVGDEYRLVQILINLVYNAIKFTDMGSVSLIIESKPPSEDN 429 Query: 736 --EVILRVRDTGVGMTNYELEKAMKPFGQIPNS---QQIRGEGTGLGLPLAKAMVDANMG 790 E+ +V DTG+G++ ++L++ +PF QI ++ Q EGTGLGL + K +V+ G Sbjct: 430 VYELTFKVTDTGIGISQHDLKRLFQPFSQILSTSHKQTKINEGTGLGLYICKQLVEMMRG 489 Query: 791 KFYIFSTPAKGT 802 + S G+ Sbjct: 490 TLCVDSEEGVGS 501 >gi|221233697|ref|YP_002516133.1| two component sensor histidine kinase [Caulobacter crescentus NA1000] gi|220962869|gb|ACL94225.1| two component sensor histidine kinase [Caulobacter crescentus NA1000] Length = 566 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/249 (34%), Positives = 127/249 (51%), Gaps = 11/249 (4%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q+ L AK AE S KS+FLA +SHE+RTPL ++G S+ +K + PL P E Sbjct: 182 QQGRALELAKSQAEAASQAKSEFLALMSHELRTPLNGMLGLSQALKLE---PL-EPGERE 237 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 ++ SG +L ++ND+LD++KIE+GK+++ L + + Q A EK Sbjct: 238 QVELLEESGRTLLALLNDVLDMAKIEAGKLDIAPTQEDLSRLAERVVRINQAQAREKGTE 297 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VIL 739 I PR +L D V+Q N++SNA+ FTP+ GQI + T + ++ + Sbjct: 298 ITLEIDPATPRALLFDPLRVRQCLGNLVSNAVKFTPA-GQIRVRVTCEAGDQPDRMLAKI 356 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTGVGM L + PF Q + R GTGLGL + + + G + ST Sbjct: 357 IVSDTGVGMGPAVLARIFTPFEQADPTIARRTGGTGLGLNITRRLAQMMGGSVSVRSTEG 416 Query: 800 KGTLIEIIF 808 KG+ + F Sbjct: 417 KGSTFTLTF 425 >gi|254412177|ref|ZP_05025952.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196181143|gb|EDX76132.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1263 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 108/419 (25%), Positives = 185/419 (44%), Gaps = 71/419 (16%) Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV----FLEQNTPSVMNHYLTEILSL 519 GI+I +++G ++ N A K+ G V D + + + + + + +L Sbjct: 620 GISITDKQGNLIEANAASEKILGLSVSDRINAKYVTPQLNVIRPDGTVMPRSEFANVKAL 679 Query: 520 DLRQTLEKITLGSTKEE-KLLSLRIIIKKLPF-SSCYSLTMHDISEWKQEKNKLSHAKKI 577 Q ++ G K + K+ + +P S + DI+E KQ + L AK++ Sbjct: 680 IQNQVIKNHEAGIVKPDGKITWISATASPIPLRDSGVVVAYLDITERKQAEEALQQAKEV 739 Query: 578 AEKESSH-------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 A +E+ KS+FL +SHE+RTPL I+G+++++K L NP++ N I Sbjct: 740 AVREAKRSEIANRAKSEFLTNMSHELRTPLNGILGYAQLLKQD--TTLTNPQH-HNLNII 796 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + G +L ++ND+LD++KIE+ KM L+ L + L QL A +K I+ Sbjct: 797 HQCGEHLLTLINDILDLAKIEAQKMELYPTEFHLPNFLHSLADLFQLRAQQKDIIFTYQV 856 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSG--------------------------- 722 + +P ++AD + ++Q+ N+LSNAI FT G Sbjct: 857 LSPLPNGVIADNKRLRQVLCNLLSNAIKFTDRGEVTFTVSVVNRTDVKSACRNSAVESKL 916 Query: 723 GQIIISTTHTSNEE------------------------VILRVRDTGVGMTNYELEKAMK 758 Q T TSN + + +++DTGVG+ +L K Sbjct: 917 SQSGFCTNLTSNSQNQVPKPTPTNPVYSRLAKDQHCKTIRFQIKDTGVGIDLSQLTKIFL 976 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT--LIEIIFPLYDTSH 815 PF Q+ + EGTGLGL +++ ++ + + S P KG+ +I PL H Sbjct: 977 PFHQVSDHSHA-TEGTGLGLAISQKLIQLMGSEIKVKSIPGKGSTFWFDINLPLVSGWH 1034 >gi|114777683|ref|ZP_01452643.1| probable sensor/response regulator hybrid protein [Mariprofundus ferrooxydans PV-1] gi|114551899|gb|EAU54433.1| probable sensor/response regulator hybrid protein [Mariprofundus ferrooxydans PV-1] Length = 1043 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 125/243 (51%), Gaps = 7/243 (2%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + ++L+ A+ A + KSDFLA +SHEIRTP+ A+IG S + + Q + + Sbjct: 296 EVARRTSQLAEARDRALAAAQVKSDFLANMSHEIRTPMNAVIGLSHLAREQA----ESHQ 351 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +Y N I + +L I+ND+LD SKIE+GKM++ D+ + + L A K Sbjct: 352 QQDYLNKILAASKSLLIIINDILDFSKIEAGKMHMETVVFDFDDTLKNIAGVGGLEAGRK 411 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVIL 739 + +P++ D + Q+ LN+++NAI FT G I+ +E E+ Sbjct: 412 GLDFLFDVPPQLPKLRGDPVRLGQVLLNLVNNAIKFTSRGEVIVTVKILAMDEHETELSF 471 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+GM+ +L F Q S + GTGLGL + K +V G+ + STP Sbjct: 472 SVSDTGIGMSQEQLAGIFDAFSQADTSITRKFGGTGLGLAICKQLVSMMQGEIGVESTPG 531 Query: 800 KGT 802 +G+ Sbjct: 532 EGS 534 >gi|46581671|ref|YP_012479.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46451094|gb|AAS97739.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|311235311|gb|ADP88165.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1] Length = 839 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/258 (28%), Positives = 135/258 (52%), Gaps = 9/258 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K+ +L A+ AE + KS+FLA +SHE+RTPL ++G +++ P G Sbjct: 412 DVTERKRVLAELRTARDAAEAANKAKSEFLAHMSHELRTPLNGVMGMLQLLDEHVAAPQG 471 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + S +L I++D+LD+S+IE+G+++L EP + + ++ + + Sbjct: 472 R----AWLDVALESSRALLRILSDILDLSRIEAGRLDLMQEPFTPESVLAPVLVSLHRTV 527 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + + I +++P +L D ++Q+ LN+L NA +T G + N + + Sbjct: 528 EGRAVRIVNEMDDSMPPVLVGDPGRIRQVLLNLLGNAAKYTERGEVRVGMRVLRRNGKAL 587 Query: 739 ---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 L V DTGVG+ + +L++A++PFG++ + G GLGLP+ +V G I Sbjct: 588 RVHLHVTDTGVGIADEQLQRALEPFGRLRQGSGLP-RGVGLGLPIVVRLVRLMGGTLCIA 646 Query: 796 STPAKGTLIEIIFPLYDT 813 S GT + + PL + Sbjct: 647 SEQGVGTEVHVTLPLLEA 664 >gi|311747467|ref|ZP_07721252.1| putative sensory box histidine kinase/response regulator [Algoriphagus sp. PR1] gi|311302668|gb|EFQ79250.1| putative sensory box histidine kinase/response regulator [Algoriphagus sp. PR1] Length = 1283 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/258 (33%), Positives = 140/258 (54%), Gaps = 14/258 (5%) Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 S Y+ D+S+ K+ + +L AK+ AE+ S KS FL+ +SHEIRTP+ A+IG S ++ Sbjct: 1011 SFYTGIARDVSKLKEAQKELVKAKENAEQASLVKSQFLSIMSHEIRTPMNAVIGLSHLLM 1070 Query: 612 NQ--RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + R L N + +++ S ++ ++ND+LD +KI+SGK+ L P+ L V+ Sbjct: 1071 QEDPRADQLENLKTLQF------SAENLMALINDILDYNKIDSGKVELEELPLDLKNLVT 1124 Query: 670 EAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 + ANEK + + ++P ++L D + QI N+LSNAI FT G++ I Sbjct: 1125 RIVHSHSFQANEKDLRLSCLIDPDLPQKLLGDSVRLGQIINNLLSNAIKFTDK-GEVTIK 1183 Query: 729 TTHTSNEEVILRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 +H E+ I RV DTG+G+ + E + F Q +S + GTGLGL + K + Sbjct: 1184 LSHEILEKGICRVNFECIDTGIGVPEDKKESIFEAFTQASSSTTRKYGGTGLGLAIVKRL 1243 Query: 785 VDANMGKFYIFSTPAKGT 802 V+ G + S + G+ Sbjct: 1244 VNLYGGDIEVNSNISGGS 1261 >gi|298246254|ref|ZP_06970060.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297553735|gb|EFH87600.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 495 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 124/235 (52%), Gaps = 5/235 (2%) Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGNPRYIEYANYIDRSGNLVL 638 ++ + + LA ++H++ TPLTAI GFSE + + P E A I R + Sbjct: 256 RQEQARRELLANIAHDLATPLTAIQGFSEALADDMIQDPAARQ---ETAQRIGREVQRLR 312 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +V DL ++ +ESG+ L P+SL E ++E +++++ I++ +++P + Sbjct: 313 RMVADLQQMTSLESGRTRLDLAPLSLHELIAETLAVIEPECEHAGIVVHNETRDDVPLVQ 372 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAM 757 AD V Q+ LN+L NA TP GG I + S + V + + DTGVG+ + +L Sbjct: 373 ADSDRVTQVLLNLLDNARRHTPVGGTITVGAHPGESGQSVEVWIEDTGVGIDSADLPHIF 432 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 + F + S+ G+GLGL + +A++ A+ GK + STP KGT I P+ + Sbjct: 433 ERFYRADRSRTGATGGSGLGLSIVRAIITAHGGKVWARSTPGKGTRISFSLPMAE 487 >gi|262403756|ref|ZP_06080314.1| sensor protein TorS [Vibrio sp. RC586] gi|262350260|gb|EEY99395.1| sensor protein TorS [Vibrio sp. RC586] Length = 967 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/257 (31%), Positives = 130/257 (50%), Gaps = 10/257 (3%) Query: 559 HDISEWKQEKNK--LSHAKK--IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 H +S+ + N+ L+HAK AE+ S KS FLA +SHEIRTP+ ++G + +++ Sbjct: 440 HQLSDMNHKLNQEVLNHAKARYQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQETS 499 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 Y I+RSG +L I+ND+LD SKIE+G + +H L V E L Sbjct: 500 LTSTQQ----HYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHQTHFDLYRLVRETHEL 555 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +Q A EK I +R FA+ + + D + Q+ N++ N I FT G I + Sbjct: 556 MQSRALEKGIKLRYQFADGVTQFWQGDEIRIGQVLNNLVGNGIKFTEQGEVCIQICQDPA 615 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + + V+D+G+G+ E F Q ++ +G GTGLGL +++ +V A G+ Sbjct: 616 GQGIRFEVQDSGIGIAQEEQASLFDAFTQAEAGRRKQG-GTGLGLAISRKLVQAMGGEMR 674 Query: 794 IFSTPAKGTLIEIIFPL 810 + S +G+ PL Sbjct: 675 LSSEQGQGSCFSFTLPL 691 >gi|302409538|ref|XP_003002603.1| ethylene receptor [Verticillium albo-atrum VaMs.102] gi|261358636|gb|EEY21064.1| ethylene receptor [Verticillium albo-atrum VaMs.102] Length = 1373 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 123/239 (51%), Gaps = 10/239 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTP+T +IG +E++++ + + EY I RS N +L ++ND+ Sbjct: 793 KSQFLANMSHEIRTPITGVIGMAELLQDMKL----DSEQREYVENIQRSANALLTVINDI 848 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---ILADL 701 LD SK+ESG++++ SL + + ++ A K + + + I ++ D Sbjct: 849 LDFSKVESGRLDIEEVQFSLSVVLKDVSKMLSFAAERKDLAFLSDVSREITNDMVVIGDP 908 Query: 702 RSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMK 758 V+QI N+L+N+I FT G + + +++ VI+R + DTG+G+ +K + Sbjct: 909 GRVRQIVTNLLTNSIKFTNQGHVKFSVKKEKETHDSVIIRFTIEDTGIGIEEEVRKKLFQ 968 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 PF Q S R GTGLGL + K +++ GK + S GT P P Sbjct: 969 PFSQGDASTARRFGGTGLGLTICKNLLELMRGKITLESDLGNGTTATFWIPFSKPQGPQ 1027 >gi|77917671|ref|YP_355486.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM 2380] gi|77543754|gb|ABA87316.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter carbinolicus DSM 2380] Length = 867 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 95/369 (25%), Positives = 191/369 (51%), Gaps = 27/369 (7%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 QL +IL++ SDG+ + + I+ + + +L G P+ D+ + ++ +T + Sbjct: 517 QLETILKSVSDGLLFTDLDNRIMLMSHSAEELLGVPLHDVFGLQVSQVIDNDT---LLKR 573 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 L + S +T I L +K+ +++ + + SE ++ ++ Sbjct: 574 LQAVASDKQEETSVIINLPEPGTDKVQTVQASLAAVR------------SEEGLKRGVIT 621 Query: 573 HAKKIA-EKESS-HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + I+ E+E K++F++ +HE+RTPLT++IGFSEV+ Q G L + E+ + I Sbjct: 622 LLRDISRERELDLMKTEFISTAAHELRTPLTSVIGFSEVMLQQ--GGL-TEQQTEFLSII 678 Query: 631 DRSGNLVLDIVNDLLDISKIESGK-MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + ++ IV DLLD++++++G+ + L + ++ ++ ++S + + R +T Sbjct: 679 HKKAEVLGKIVEDLLDLARVDTGQVIRLKKDWADVNGILARSVSDYRRVCQDHRF--KTV 736 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 + +L D R + Q+ N+LSNA+ F+P I + T ++ E+ + V D G+GM Sbjct: 737 LPDAPIEMLVDDRKLFQVMENLLSNAVKFSPVDSLIQV-TCQLADNELYIAVSDQGIGMQ 795 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++++ F ++ S R EG GLG+ + K++V+A+ G+ ++ S P +GT + P Sbjct: 796 PAQIDRMFDKFYRVDASNTAR-EGLGLGMAIVKSIVEAHNGRIWVTSKPNRGTTVTFTLP 854 Query: 810 LYDT--SHP 816 D SHP Sbjct: 855 YTDNLESHP 863 >gi|89070251|ref|ZP_01157575.1| two-component hybrid sensor and regulator [Oceanicola granulosus HTCC2516] gi|89044171|gb|EAR50329.1| two-component hybrid sensor and regulator [Oceanicola granulosus HTCC2516] Length = 455 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 129/240 (53%), Gaps = 5/240 (2%) Query: 566 QEKNKLSHAKKIAEKESSH---KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 Q + L +++ E+ + KS+F++ ++HE+RTPL +I G +I G + R Sbjct: 203 QSRRSLREKERLLEETQAANLAKSEFISVINHELRTPLASIKGAVSLINGNAVGEV-PER 261 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + + +R+ N ++ +VNDLLD+ K +GKM HF+ + L ++ I+ Q +AN Sbjct: 262 FRRMLSLAERNCNHLIQLVNDLLDVEKFSAGKMEFHFKNIDLKSFLTAEIATNQTFANNF 321 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + I + + D + + Q+ N+LSNA F+ I++ T E VI V+ Sbjct: 322 GVTIEAAPMPEGVHVWGDEKRLGQVLSNLLSNAAKFSKPDSTIVVGLKATGTEAVI-SVQ 380 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D+G G+ + + +PF Q+ +S + GTGLGL + K++VDA+ G+ + S P +GT Sbjct: 381 DSGRGIPREKQSRLFEPFYQVDSSNERERGGTGLGLSIVKSIVDAHQGRIRLVSEPGRGT 440 >gi|332530052|ref|ZP_08406002.1| putative hybrid sensor and regulator [Hylemonella gracilis ATCC 19624] gi|332040525|gb|EGI76901.1| putative hybrid sensor and regulator [Hylemonella gracilis ATCC 19624] Length = 1320 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/250 (31%), Positives = 139/250 (55%), Gaps = 8/250 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DI+E K+ + +L A+ A++ + KSDFLA +SHEIRTP+ AIIG S ++ Sbjct: 519 VIADITERKRMEGELRVARDRAQEAAQAKSDFLANMSHEIRTPMNAIIGLSHLLLKTEL- 577 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + R +Y I ++G +L ++ND+LD+SKIE+GK+ + L++A+S +L+ Sbjct: 578 ---SQRQHDYLRKIQQAGQHLLGVINDILDLSKIEAGKLVIEHTEFQLEKALSNVANLIA 634 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSN 734 A+ K + + A ++P R++ D + QI +N +NA+ FT G + I ++ Sbjct: 635 EKAHAKGLELIFDIAPDVPQRLVGDSLRLGQILINYANNAVKFTERGEVTVQIRVRERTD 694 Query: 735 EEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 +V+L V DTG+G++ + ++ + F Q NS GTGLGL ++ + + G Sbjct: 695 HDVLLYCAVHDTGIGLSVEQQKRLFQSFQQADNSTTREYGGTGLGLSISLELAERMGGTV 754 Query: 793 YIFSTPAKGT 802 + S +G+ Sbjct: 755 GVSSQLGRGS 764 >gi|293404288|ref|ZP_06648282.1| hybrid sensory histidine kinase TorS [Escherichia coli FVEC1412] gi|300896367|ref|ZP_07114909.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 198-1] gi|331662402|ref|ZP_08363325.1| TMAO reductase sytem sensor TorS [Escherichia coli TA143] gi|291428874|gb|EFF01899.1| hybrid sensory histidine kinase TorS [Escherichia coli FVEC1412] gi|300359778|gb|EFJ75648.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 198-1] gi|331060824|gb|EGI32788.1| TMAO reductase sytem sensor TorS [Escherichia coli TA143] Length = 900 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 133/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIHLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TEIADDVPTALMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPTKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|229105216|ref|ZP_04235865.1| hypothetical protein bcere0019_43500 [Bacillus cereus Rock3-28] gi|228678142|gb|EEL32370.1| hypothetical protein bcere0019_43500 [Bacillus cereus Rock3-28] Length = 571 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 101/376 (26%), Positives = 184/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ +L++ Sbjct: 224 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEE--------YLDRLYYE 275 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 +H TEI+ L +E+I + K K + L + I++ F Sbjct: 276 SFHH--TEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 328 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K +L +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 329 VLVFHDITELK----RLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 372 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ E V + + + Sbjct: 373 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMETVDMKGLLEDIHM 431 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + + ++ D +KQI +N+++NAI +TP+GG + + Sbjct: 432 VLDNKAGEKEISLQVNVLKRVS-VIGDPGRLKQIFINLINNAIVYTPAGGVVSVELAEDK 490 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 491 YNAYI-KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 549 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 550 VDSEVGEGTTFTVVLP 565 >gi|167741025|ref|ZP_02413799.1| histidine kinase/response regulator fusion protein [Burkholderia pseudomallei 14] Length = 927 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 87/264 (32%), Positives = 133/264 (50%), Gaps = 10/264 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DIS K+ + KL A+ A++ + KS FLA +SHEIRTPL AIIG E+++ Sbjct: 418 TLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRS--- 474 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + E + ++ N +L I+ND+LD+SK+ESG+M L P + + E + Sbjct: 475 PLSEQQS-ERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYA 533 Query: 677 LYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIII----STTH 731 A K + + +S + R A D ++Q+ N++ NAI FT G I I + Sbjct: 534 PLAESKGLALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAA 592 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + V DTG+G+ + + Q S R G+GLGLPL + +V G Sbjct: 593 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 652 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSH 815 I S P GT + + PL + H Sbjct: 653 IEIDSLPDFGTTVTVALPLREARH 676 >gi|332798940|ref|YP_004460439.1| multi-sensor signal transduction histidine kinase [Tepidanaerobacter sp. Re1] gi|332696675|gb|AEE91132.1| multi-sensor signal transduction histidine kinase [Tepidanaerobacter sp. Re1] Length = 581 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 100/356 (28%), Positives = 176/356 (49%), Gaps = 26/356 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLT 514 ++L + ++G+ ++ I+ N A KLF ++ L R + + ++N LT Sbjct: 248 AVLSSMAEGLIAVDHNCHIVMMNSAAEKLFKIKKDEFLGRHLLEMLRNKELYDLVNTVLT 307 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 S +L Q L+ IT EK+ + I I K+ S + + DI++ + Sbjct: 308 T--SKNLSQELKIIT----STEKIFYINISPINKIENSGAV-IILRDITDLR-------- 352 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 K +++F+A +SHE++TPLT+I GF E + + + + +Y + I + Sbjct: 353 ------KLEKVRTEFVANISHELKTPLTSIAGFVETLLDGAYKSQDHCKY--FLGIIKQE 404 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 + + ++N+LL S IE + +PV + E + +A+S++Q NEK+ + N Sbjct: 405 TDRMTRLINELLYFSHIEKNGTEIIKKPVDMIEVIMKALSILQTAINEKKHKVNLKLPEN 464 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 I IL++ S+ QI +N+L NAI +TP GG I I T E V++ V D G+G+ EL Sbjct: 465 IAHILSNEDSLLQIMINLLDNAIKYTPEGGTISIMVEETL-ENVLITVADNGIGIAEDEL 523 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ + F ++ ++ GTGLGL + K +V G + S KGT + P Sbjct: 524 DRIFERFYRVDRARSGEIGGTGLGLAMVKHLVKGLEGWIKVESELEKGTSFTVYIP 579 >gi|296387528|ref|ZP_06877003.1| putative two-component sensor [Pseudomonas aeruginosa PAb1] Length = 981 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 143/253 (56%), Gaps = 12/253 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DI+E +Q ++L AK +A++ S K+ FLA +SHEIRTP+ A+IG E+ +K G + Sbjct: 685 DITEHRQLIDELEEAKNLADEASRAKTTFLATMSHEIRTPMNAVIGILELALKRAETGRV 744 Query: 619 GNPRY-IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 I YA S +L+++ D+LDI++IESG+++L + +L E V + + Sbjct: 745 DRSSIEIAYA-----SAKSLLELIGDILDIARIESGRLSLSPKRANLRELVESVARVFEG 799 Query: 678 YANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTS 733 A +KR+ + ++I +L D KQI N++SNAI FT G +I S Sbjct: 800 LARQKRLSLVLEIDSSINGDVLLDAMRFKQILSNLVSNAIKFTDEGSIRIRIDGRQVEPS 859 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +V L V DTG+G++ + ++ +PF Q+ + Q EGTGLGL +++++ + G+ Sbjct: 860 LLQVNLCVEDTGIGISLGDQQQLFRPFAQVNRNLQ-NTEGTGLGLVISRSLCEMMGGRLV 918 Query: 794 IFSTPAKGTLIEI 806 + S +GT I++ Sbjct: 919 MSSELGQGTRIDV 931 >gi|255534129|ref|YP_003094501.1| ATPase [Pedobacter heparinus DSM 2366] gi|255347113|gb|ACU06439.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM 2366] Length = 1196 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 136/247 (55%), Gaps = 6/247 (2%) Query: 566 QEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KNQRFGPLGNPRY 623 QE+N + H + E+ + +KS+FLA +SHE+RTPL +I+ S+++ +N+ + Y Sbjct: 509 QERNLDIQHKAEQLEQSTKYKSEFLANMSHELRTPLNSILLLSKLMSENKEL----DKEY 564 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 IEYA I SG +L +++++LD+SKIE+GKM L F V++ E ++ SL A K Sbjct: 565 IEYAEVIQSSGQGLLGLIDEILDLSKIEAGKMKLEFTDVNITEVATDMRSLFSPLAKNKN 624 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + + ++I I D ++QI N+LSNAI FT +G + + + ++ +V D Sbjct: 625 LDLVIDVESDISGINTDRMRLEQILKNLLSNAIKFTSTGKVALTVKQDDAGKAILFKVTD 684 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ + + F Q S + + GTGLGL +++ + G+ + S G+ Sbjct: 685 TGIGIPLDKQGLIFEAFQQADGSTRRKFGGTGLGLSISRELSKLLGGEIELTSKENVGSE 744 Query: 804 IEIIFPL 810 + P+ Sbjct: 745 FTLALPV 751 >gi|238920097|ref|YP_002933612.1| sensory histidine kinase AtoS [Edwardsiella ictaluri 93-146] gi|238869666|gb|ACR69377.1| signal transduction histidine-protein kinase AtoS [Edwardsiella ictaluri 93-146] Length = 590 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 90/366 (24%), Positives = 175/366 (47%), Gaps = 32/366 (8%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 I+E +DG+ I+R G + + N A + GY ++++ +P+ + H+ + + Sbjct: 249 IIENAADGVIAIDRLGNLTTINPAAEAITGYTRDELVGQPYAALFSGS------HFASPV 302 Query: 517 LSLDLRQTLEKIT--LGSTKEEKLLSLRIIIKKL--PFSSCYS--LTMHDISEWKQEKNK 570 L L E + + + + L + ++ P + D++ K+ + + Sbjct: 303 LD-TLAHGTEHLAQEVSFPARHRTIELSVTTSRIHNPHGELMGALVIFSDLTARKEAQRR 361 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L+ +++A + +A V+HE+R PLTAI G+ ++I+ Q P + EY + + Sbjct: 362 LAQTERLATL-----GELMAGVAHEVRNPLTAIRGYVQIIRQQT----ALPAHQEYLSVV 412 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + + + ++ LLD S+ + ++ VSL+ + EA+ LVQ + RI + Sbjct: 413 LKEIDSINKVIQQLLDFSRPRQSQ----WQRVSLNVLIEEALILVQTSGVQARITFHCAL 468 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + +P I+AD +KQ+ LNIL NA+ + G+I I T + + + + D+G G+ Sbjct: 469 DSTLPAIVADRELLKQVLLNILINAVQAISARGEIRIRTWQPTPAQQAVTITDSGCGIDI 528 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +K PF + GTGLGL L++ +++A+ G + STP GT ++ P Sbjct: 529 ALQKKIFDPFF------TTKAAGTGLGLALSQRIINAHRGDIDVASTPGGGTAFTLMLPT 582 Query: 811 YDTSHP 816 + P Sbjct: 583 HPPESP 588 >gi|170697003|ref|ZP_02888099.1| histidine kinase [Burkholderia ambifaria IOP40-10] gi|170138177|gb|EDT06409.1| histidine kinase [Burkholderia ambifaria IOP40-10] Length = 1026 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 88/259 (33%), Positives = 133/259 (51%), Gaps = 10/259 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KNQRF 615 T+ DI+ KQ + KL A++ AE + KS FLA +SHEIRTPL AIIG E++ + Q Sbjct: 494 TLLDITTRKQAEEKLREAREAAEFANKAKSTFLATMSHEIRTPLNAIIGNLELMERAQMA 553 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 PL I S + +L ++ND+LD+SK ES +M L P L V+E ++ Sbjct: 554 APLRR-----RLGTIMSSSDALLRVINDVLDLSKAESNQMALESIPFDLRRVVNEVAAIF 608 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTH 731 + A+ K +++ A ++ + D ++Q+ N++SNAI FT GG I ++ Sbjct: 609 RPLADAKSLVLTCRIAPDLANGYVGDATRLRQLVSNLVSNAIKFTKRGGVTIDVRLAKAG 668 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + V + V DTG+G+ L + Q S R GTGLGLPL + +V G Sbjct: 669 PAGRCVEIAVSDTGIGIPEDGLPTLFDVYVQTDASIYRRFGGTGLGLPLCRRIVTLMGGA 728 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + S +GT+ PL Sbjct: 729 LNVDSRLGEGTIFVAALPL 747 >gi|197119551|ref|YP_002139978.1| HAMP/Hpt domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197088911|gb|ACH40182.1| sensor histidine kinase response regulator, HAMP and Hpt domain-containing protein [Geobacter bemidjiensis Bem] Length = 817 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 88/273 (32%), Positives = 141/273 (51%), Gaps = 9/273 (3%) Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 +++KL + RI ++++ + L+ + E Q +L +K AE S KS FLA +S Sbjct: 252 RDQKLEAHRIELEEVVQRRTHELSAAN-RELSQTVAELRFSKDAAEAASLAKSQFLANMS 310 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HEIRTP+ ++G V+ G G R +A + SG +L I+ND+LD SKIE+G Sbjct: 311 HEIRTPMNGVLGMVSVLLES--GLAGEQRC--FAEAVRNSGESLLCIINDILDFSKIEAG 366 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNIL 712 +M+L P+ L ++E + + A K + + A ++PR + ADL ++QI +N++ Sbjct: 367 RMHLDPAPMDLHGMMAEVLEMFGAGARSKGVGMECRTAPDVPRYVEADLARLRQIVVNLV 426 Query: 713 SNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 NA+ FT G Q+ EE +LR V DTG+G+ L F Q S Sbjct: 427 GNAVKFTSRGEVQLHAFQLEERGEERVLRFEVVDTGIGIRPEALAHIFDSFTQADYSTTR 486 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GTGLGL +A+ + + G+ + S G+ Sbjct: 487 SFGGTGLGLAIARQLAELMGGELGVVSEFGAGS 519 >gi|317139763|ref|XP_001817748.2| sensor histidine kinase/response regulator [Aspergillus oryzae RIB40] Length = 2326 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 84/281 (29%), Positives = 140/281 (49%), Gaps = 29/281 (10%) Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAK------KIAEKESSH-----------KSDFLA 590 L F ++ + S + +K L+ A+ K+AE E+ H KS FLA Sbjct: 1823 LLFREVRKVSATNASMVEAQKRALAQAREAEQKAKVAEAEAKHNVKLKEDAAKAKSIFLA 1882 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SH++RTP+ +IG SE++K + + EY I + +L ++ND+LD SK+ Sbjct: 1883 NISHDLRTPMNGVIGLSELLKATKL----DKEQDEYVESIRVCADTLLTLINDILDFSKL 1938 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP---RILADLRSVKQI 707 E+GKM + P+++ E +SE + ++ Y + R L +P +L D + QI Sbjct: 1939 EAGKMKISTVPLNIKETISEVVRALR-YTHRDRGLETIEDLEKVPPDLVVLGDPVRLHQI 1997 Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTGVGMTNYELEKAMKPFGQIP 764 +N+LSN+ FTP G + + + I V DTG+G+ + + +PF Q Sbjct: 1998 FMNLLSNSYKFTPKGSVTVRARVTREGKGRIRLECSVSDTGIGIPEEQKSRLFRPFSQAD 2057 Query: 765 NSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLI 804 +S G+GLGL + KA++ D G ++ STP GT + Sbjct: 2058 SSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVGTTV 2098 >gi|89896828|ref|YP_520315.1| hypothetical protein DSY4082 [Desulfitobacterium hafniense Y51] gi|89336276|dbj|BAE85871.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 560 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 132/229 (57%), Gaps = 3/229 (1%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 +++KS+FLA +SHE+RTPLT+++ F++++ L R + YI + +L ++ Sbjct: 320 NTYKSEFLAIMSHELRTPLTSVMAFTDLLLQDLPKELKQER--QNLKYIKANSQNLLKLI 377 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 N++LD++KIE+G++ L E V + + + S++ A +K I S + + AD Sbjct: 378 NNILDLAKIEAGRLELKLEYVDMADVMGAIDSVIAPLAKKKGINWEISLDPEVSLLRADP 437 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPF 760 ++++ N++ NAI FTP G++ I + + +++RV DTG+G+ E E+ + F Sbjct: 438 EKLRRVIENLVGNAIKFTPPEGRVEIQVKNAPRDNWLMIRVIDTGIGIPPEEQEEIFERF 497 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 QI +S + GTGLGL LAK +V + G+ ++ S KG+ ++ P Sbjct: 498 TQIDSSNSRKYGGTGLGLALAKELVTLHKGELWVESELNKGSTFVVLLP 546 >gi|325680246|ref|ZP_08159808.1| response regulator receiver domain protein [Ruminococcus albus 8] gi|324108063|gb|EGC02317.1| response regulator receiver domain protein [Ruminococcus albus 8] Length = 1019 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/261 (30%), Positives = 133/261 (50%), Gaps = 8/261 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 ++ E + LS A AE+ S K+ FL+ +SHEIRTP+ AIIG + + N P Sbjct: 484 EMRESMAQSRALSDALAAAEQASKAKTSFLSSMSHEIRTPMNAIIGLNAIALN---APEL 540 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + +Y I S N +L ++ND+LD+S+IESGK L E S + + + ++ Sbjct: 541 TDKTRDYLEKIGSSANHLLSLINDILDMSRIESGKTVLKNEDFSFSKLLEQINTIFGAQC 600 Query: 680 NEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SN 734 +K + ++ + D ++Q+ +NIL NA+ FTP GG + ++ T S Sbjct: 601 ADKGLDYNCRIIGSVDAHYIGDNMKLQQVLINILGNAVKFTPEGGSVALTVERTAHFDSR 660 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + L + DTG+GM++ L K + F Q +S R +GLG+ + K +V+ G + Sbjct: 661 STLRLTISDTGIGMSSEYLPKLFETFSQEDSSATNRYGSSGLGMAITKNIVEIMNGNIEV 720 Query: 795 FSTPAKGTLIEIIFPLYDTSH 815 S KGT + L D+++ Sbjct: 721 QSEKGKGTTFIVTVTLMDSAY 741 >gi|282897975|ref|ZP_06305970.1| Histidine Kinase [Raphidiopsis brookii D9] gi|281197119|gb|EFA72020.1| Histidine Kinase [Raphidiopsis brookii D9] Length = 1056 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/258 (30%), Positives = 138/258 (53%), Gaps = 10/258 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E +Q +L+ + + K +FLA +SHE++TPLTA++G S ++ ++ G L Sbjct: 336 DVTEQQQLFKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSRLLVDKNLGEL- 394 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL----DEAVSEAISLV 675 N R YA I +SG ++ +VND+LD++++E+G+M L PV + D A++EA ++ Sbjct: 395 NERQARYAGLIHQSGRHLMSVVNDILDLTRMETGQMELTPSPVRIQEVCDRALTEARAVH 454 Query: 676 QLYANEKRILIRTSFANNI----PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + L F+ I I+AD ++Q+ +++L NA FT S G++ + Sbjct: 455 TQTGRKGESLPSHEFSLTIEPGLKEIVADELRLRQMLVHLLGNAFKFTESFGKVGLRVNR 514 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + V DTG+G+ +++ + F Q+ N + EGTGLGL L +A+ + G Sbjct: 515 WEG-WIAFTVWDTGIGIPDHQQHLIFQKFQQLENPLNRQFEGTGLGLVLTRALARLHGGD 573 Query: 792 FYIFSTPAKGTLIEIIFP 809 S KG+ ++ P Sbjct: 574 VSFLSREGKGSQFTLLLP 591 >gi|282899118|ref|ZP_06307099.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505] gi|281196034|gb|EFA70950.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505] Length = 1068 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/258 (30%), Positives = 138/258 (53%), Gaps = 10/258 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E +Q +L+ + + K +FLA +SHE++TPLTA++G S ++ ++ G L Sbjct: 348 DVTEQQQLFKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSRLLVDKNLGEL- 406 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL----DEAVSEAISLV 675 N R YA I +SG ++ +VND+LD++++E+G+M L PV + D A+ EA S+ Sbjct: 407 NERQARYAGLIHQSGRHLMSVVNDILDLTRMETGQMELTPSPVRIQEVCDRALVEARSVH 466 Query: 676 QLYANEKRILIRTSFANNI----PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + L F+ +I I+AD ++Q+ +++L NA FT S G++ + Sbjct: 467 NQTGRKGESLPSHEFSLSIEPGLKEIVADELRLRQMLVHLLGNAFKFTESFGKVGLRVNR 526 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + V DTG+G+ +++ + F Q+ N + EGTGLGL L +A+ + G Sbjct: 527 WEG-WIAFTVWDTGIGIPDHQQHLIFQKFQQLENPLNRQFEGTGLGLVLTRALARLHGGD 585 Query: 792 FYIFSTPAKGTLIEIIFP 809 S KG+ ++ P Sbjct: 586 VSFLSREGKGSQFTLLLP 603 >gi|254241747|ref|ZP_04935069.1| hypothetical protein PA2G_02458 [Pseudomonas aeruginosa 2192] gi|126195125|gb|EAZ59188.1| hypothetical protein PA2G_02458 [Pseudomonas aeruginosa 2192] Length = 741 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 137/252 (54%), Gaps = 10/252 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E ++ +L A + A++ + KS FLA +SHEIRTP+ A+IG E++ QR P Sbjct: 223 DITERERLARQLREAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILELVL-QRLAPEQ 281 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R Y + +G+L L ++ D+LD++KIESG + L E V L V + + A Sbjct: 282 RERASLEVAY-EAAGSLQL-LIGDILDVAKIESGHLTLTPERVRLRHVVESVRRMFEGLA 339 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 +K + + + R +L D KQ+ N++SNAI FT GQ+ I S +E Sbjct: 340 RQKGLRLVLELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTER-GQVTIRLQERSLDEGR 398 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 I+R V D+G+G+ + + +PF Q+ + ++G GTGLGL + + +VD G + Sbjct: 399 AIVRVDVEDSGIGIAPADQARLFQPFIQVAKGRTVQG-GTGLGLAICRKLVDLMGGDVEM 457 Query: 795 FSTPAKGTLIEI 806 S P KGT + + Sbjct: 458 HSEPGKGTRVSL 469 >gi|307155195|ref|YP_003890579.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306985423|gb|ADN17304.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 404 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 87/264 (32%), Positives = 145/264 (54%), Gaps = 14/264 (5%) Query: 556 LTMHDISEWKQEKN-KLSHAKKIAE------KESSH-KSDFLARVSHEIRTPLTAIIGFS 607 L + + +E +E+N KL ++ E +E+S KS FLA +SHE+RTP+ AI+GFS Sbjct: 140 LKLRETNELLKEQNQKLERQRRQIELQNEQLQETSRLKSQFLATMSHELRTPINAIMGFS 199 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 +++ + PL + D S NL L ++ND+L SKIE+GK+ LH P LD Sbjct: 200 QMLLRKYPEPLTCAQTDLVQRIFDNSKNL-LTLLNDVLHFSKIEAGKLLLH--PTELDLK 256 Query: 668 VSEAISLVQL--YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 ++ +L A K + ++ P+I+ D +++I +N+LSNAI FT SGG + Sbjct: 257 QLTVLTTEELRSLAVSKNLSLQIKVELENPQIVNDQSCLRRILVNLLSNAIKFTESGG-V 315 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 ++ + + + V+DTG+G+ +LE + F Q + + GTGLGL +++++ Sbjct: 316 WVNVWEMRPDWLAIAVKDTGIGIAEEQLEHIFEVFRQADQTLTRKYGGTGLGLAISESLT 375 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 GK + S KG++ +I FP Sbjct: 376 KMMQGKISVTSELGKGSIFQIEFP 399 >gi|144899476|emb|CAM76340.1| sensory box histidine kinase/response regulator [Magnetospirillum gryphiswaldense MSR-1] Length = 866 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/259 (30%), Positives = 138/259 (53%), Gaps = 8/259 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + ++DI+ K+ + +L AK AE + KS+FLA +SHEIRTP+ II + ++ + Sbjct: 341 VAVNDITAVKKHEAELYAAKDAAEAAARTKSEFLAMMSHEIRTPMNGIIVMARLLLDTDL 400 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 ++ + SG+ ++ ++ND+LD SK+ESGK+++ P L + + L+ Sbjct: 401 ----TAEQRDWLEIVTSSGDTLMTVLNDILDFSKLESGKLDIEELPFDLPALIGGVVELM 456 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS 733 + A EK + I + +P ++ AD ++Q+ LN++ NAI FT GG + + Sbjct: 457 RARAEEKGLSISVHYGAGVPGVIRADPTRLRQVLLNLVGNAIKFTEMGGVHLELRVERRD 516 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 +++ILR VRDTG+G+ L + F Q+ +S R GTGLGL + + +V+ G Sbjct: 517 GDDLILRFAVRDTGIGIPAEALTRLFAAFSQVDSSINRRFGGTGLGLVICQRLVNLMGGS 576 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + S GT P+ Sbjct: 577 IEVDSVEGYGTTFTFTLPV 595 >gi|37521628|ref|NP_925005.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35212626|dbj|BAC90000.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 682 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/240 (33%), Positives = 126/240 (52%), Gaps = 7/240 (2%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A++ AE+ + K +FLA +SHE+RTPL IIGF+++++ + R +E I+R+ Sbjct: 352 ARQEAEEANRIKDEFLATLSHELRTPLNPIIGFTQLLRKGQLDEASAARALET---IERN 408 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 I+ D+LD+S+I +GK+ L PV+L V +A+ V+ A K I +R N Sbjct: 409 ARAQSRIIEDMLDLSRIITGKLRLEVRPVALATVVEDALDTVRFAAQSKNIELRARLDPN 468 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 + D ++Q+ N+LSNAI FTP G I + E +L VRD+GVG+ L Sbjct: 469 VVLPFGDSNRLRQVVWNLLSNAIKFTPENGSIEVQLER-GRAEAVLTVRDSGVGIAGDFL 527 Query: 754 EKAMKPFGQIPNSQQIRGEGT-GLGLPLAKAMVDANMGKFYIFSTPA-KGTLIEIIFPLY 811 + F Q NS R G GLGL + + +V+ + G + S + +G + PL Sbjct: 528 PHVFERFRQ-ANSTTTRSHGGLGLGLAIVRQLVELHGGTVGVESPGSDQGATFTVRLPLL 586 >gi|317504746|ref|ZP_07962706.1| two component system sensor histidine kinase [Prevotella salivae DSM 15606] gi|315664128|gb|EFV03835.1| two component system sensor histidine kinase [Prevotella salivae DSM 15606] Length = 1319 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/244 (33%), Positives = 128/244 (52%), Gaps = 8/244 (3%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE-VIKNQRFGPLGNPRYIEY 626 K + HAK I E+ S K F VSHEIRTPLT I+G SE ++ +QRF + + Sbjct: 780 KYEQQHAKDIEERNQS-KLRFFTNVSHEIRTPLTVIMGLSEALLHSQRFAADIHNKL--- 835 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I R+ + D++++LLD K E + L E V SL + YAN K I + Sbjct: 836 -QGIYRNSQQLRDLISELLDFKKQEHTQGKLCVEETQWSAFVKTICSLFKEYANAKDISL 894 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T A + D + +K++ N+++NA+ +TP GG I++ TT T+ + +L+V D+G Sbjct: 895 -TVNATTDTMVWIDQKQMKKVVNNLIANALKYTPQGGTIVV-TTQTTATDAVLQVADSGK 952 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +LE F Q+ + + GTG+GL L + +V + G ++ S KGT + Sbjct: 953 GIAPADLEHVFDCFYQVKEFESLTEIGTGIGLNLTQTIVQQHHGTIHVTSEINKGTTFTV 1012 Query: 807 IFPL 810 PL Sbjct: 1013 AIPL 1016 >gi|307824966|ref|ZP_07655188.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307734013|gb|EFO04868.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 1759 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 124/218 (56%), Gaps = 6/218 (2%) Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 S+F+AR+SHE+RTPL I+G+++++ + GN R N I +SG +L+++ND+L Sbjct: 1291 SEFMARMSHELRTPLNGILGYAQILLGE---SRGNERQSAMLNVIQQSGEYLLNLINDIL 1347 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSV 704 D +KIE+GK L + L + S++ + A +K ++ A ++P I AD + Sbjct: 1348 DFAKIEAGKQELSLSDIQLPSFLRNLASIITIKAEQKALVFVCDIAADVPAGIRADETRL 1407 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +Q+ LN+LSNAI ++ GQI + T + V+D+G+G+ +L+ + F Q Sbjct: 1408 RQVLLNLLSNAIKYSER-GQISLKVTVLEPGRLRFEVQDSGLGIDTGQLDTIFQAFEQAG 1466 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + Q R GTGLGLP+++ +V ++ S +G+ Sbjct: 1467 DWQH-RTGGTGLGLPISRELVRMMDSDIHVTSRVDEGS 1503 >gi|229099048|ref|ZP_04229982.1| hypothetical protein bcere0020_42710 [Bacillus cereus Rock3-29] gi|229118079|ref|ZP_04247438.1| hypothetical protein bcere0017_43480 [Bacillus cereus Rock1-3] gi|228665302|gb|EEL20785.1| hypothetical protein bcere0017_43480 [Bacillus cereus Rock1-3] gi|228684276|gb|EEL38220.1| hypothetical protein bcere0020_42710 [Bacillus cereus Rock3-29] Length = 571 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 101/376 (26%), Positives = 184/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ +L++ Sbjct: 224 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEE--------YLDRLYYE 275 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 +H TEI+ L +E+I + K K + L + I++ F Sbjct: 276 SFHH--TEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 328 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K +L +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 329 VLVFHDITELK----RLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 372 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ E V + + + Sbjct: 373 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMETVDMKGILEDIHM 431 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + + ++ D +KQI +N+++NAI +TP+GG + + Sbjct: 432 VLDNKAGEKEISLQVNVLKRVS-VIGDPGRLKQIFINLINNAIVYTPAGGVVSVELAEDK 490 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 491 YNAYI-KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 549 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 550 VDSEVGEGTTFTVVLP 565 >gi|218708960|ref|YP_002416581.1| sensory box histidine kinase/response regulator [Vibrio splendidus LGP32] gi|218321979|emb|CAV17985.1| sensory box histidine kinase/response regulator [Vibrio splendidus LGP32] Length = 1462 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 97/342 (28%), Positives = 168/342 (49%), Gaps = 22/342 (6%) Query: 480 AVSKLFGYPVEDILRKP---FTVFLEQNTPSVMNHYLTEI----LSLDLRQTLEKITLGS 532 VS +FG V+++ P F + E + P L I + R LE G Sbjct: 617 GVSDMFGLSVDNVKEHPQHLFDLIAEDDLPQFETSMLEAIETGHWENEQRMQLES---GQ 673 Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 TK K S K + +++ + DI+ K+++ L +A++ AE ++ KS FLA + Sbjct: 674 TKWVKFNSQVSNSKTIEWNTVIT----DITLLKKQQQALDNARQKAESATAAKSQFLATI 729 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHE+RTP++ I+G E+++ + + + +++S +L IVND+LD SKIE+ Sbjct: 730 SHEVRTPISGILGLLELMQEHQL----SEELLNLHGGLNQSARNLLHIVNDVLDYSKIEA 785 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNI 711 GK++L+ + L + ++ + ++A +K + N+ + L AD + QI N Sbjct: 786 GKLDLNPTEIELGKVLARIVQPQSIHAQQKGLAFHYWQDPNLAQWLFADDIRLHQILNNF 845 Query: 712 LSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 L+NAI FT G I + + ++V L V DTG+G+ + +PF Q+ + Sbjct: 846 LNNAIKFTEHGTISLHIDVIEQNEHQQKVSLTVSDTGIGIPKDRQQSLFQPFEQVDKTTS 905 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 R GTGLGL +A +++ G + S KG+ + L Sbjct: 906 RRFGGTGLGLSIALKLIEQMDGNIELSSEEGKGSHFTVTVTL 947 >gi|331017298|gb|EGH97354.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 1123 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/267 (28%), Positives = 142/267 (53%), Gaps = 8/267 (2%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 SL + +I ++ L AK+ +E ++ KS ++ +SHE+RTPL +I+GF+++++ Sbjct: 652 SLLIQEIDAHEKTDQALQKAKEASEAANAAKSRYITGLSHELRTPLNSILGFTQILQRDT 711 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P P + + I RS + +L ++N LLD++KIE+GK+ L + E + + + Sbjct: 712 TTP---PHHQDPLATIMRSSSHLLSLINGLLDVAKIEAGKLKLEPTEILFQEFLHDLEKM 768 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 A EK + R +P ++ D + V+QI +N+L NA++FT S G++++ ++ Sbjct: 769 FAGTAQEKNLGFRLELEGRMPMVVRGDEKRVRQILINLLGNAVNFTDS-GEVVLRVSY-R 826 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E I + D+G+G+ ++E+ +PF + Q G GLGL + + + G Sbjct: 827 RETAIFDIVDSGIGIAPEQIERIFQPFER--GGQTRHDNGVGLGLTITRMLTALMGGALS 884 Query: 794 IFSTPAKGTLIEIIFPLYDTSHPHDCI 820 + STP +GT ++ L + P I Sbjct: 885 VSSTPGEGTHFKVRLFLSEVRVPKAVI 911 >gi|186683169|ref|YP_001866365.1| CBS sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465621|gb|ACC81422.1| CBS sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1118 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/264 (29%), Positives = 142/264 (53%), Gaps = 16/264 (6%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E +Q +L+ + + K +FLA +SHE++TPLTA++G S ++ +Q+ G L Sbjct: 364 DVTEQQQLCKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSRLLVDQQLGEL- 422 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL----DEAVSEAISL- 674 N R YA I +SG ++ +VND+LD++++E+G+M+L PV + D A+SEA ++ Sbjct: 423 NERQARYAGLIHQSGRHLMSVVNDILDLTRMETGQMDLTLTPVKISAVCDRALSEAKAIH 482 Query: 675 -------VQLYANEKRILIR--TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 Q N++ + S + ++AD ++Q+ +++LSNA FT G+I Sbjct: 483 TQTTKTTSQTQENDRSSAPQFCLSIELGLDEMVADELRLRQMLVHLLSNAFKFTEISGEI 542 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + + + + DTG+G+ ++ + F Q+ N + EGTGLGL L +A+ Sbjct: 543 GLRVSRWEG-WIAFTIWDTGIGIPEHQQHLIFQKFQQLENPLTRQFEGTGLGLVLTRALA 601 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + G S KG+ ++ P Sbjct: 602 RLHGGDVSFLSREGKGSQFTLLLP 625 >gi|331016191|gb|EGH96247.1| PAS protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 1189 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 139/253 (54%), Gaps = 10/253 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DIS+ +Q L AK+ A+ S KS FLA +SHEIRTP+ A+IG E+ +K G L Sbjct: 675 DISDRRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADQGEL 734 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + IE A S N +LD++ D+LDI++IESG++ L+ E +L + V + + Sbjct: 735 -DRSAIEVAY---SSANDLLDLIGDILDIARIESGRLALNPERANLRQLVESVLRVFDGL 790 Query: 679 ANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE 736 A +K + + + I +L D KQI N++SNAI FTP G +I + + + Sbjct: 791 ARQKDLDLVLELDSRINTDVLIDPLRFKQILSNLVSNAIKFTPMGRVKIALQAVDNPDPQ 850 Query: 737 VI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ + V+D+G+G++ + ++ +PF Q N+ Q+ G GLGL + +++ G Sbjct: 851 LLHLHITVQDSGIGISVEDQKRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMMGGNLS 910 Query: 794 IFSTPAKGTLIEI 806 + S P GT I + Sbjct: 911 LDSEPGNGTRISM 923 >gi|302061857|ref|ZP_07253398.1| PAS [Pseudomonas syringae pv. tomato K40] gi|302132156|ref|ZP_07258146.1| PAS [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 1189 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 139/253 (54%), Gaps = 10/253 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DIS+ +Q L AK+ A+ S KS FLA +SHEIRTP+ A+IG E+ +K G L Sbjct: 675 DISDRRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADQGEL 734 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + IE A S N +LD++ D+LDI++IESG++ L+ E +L + V + + Sbjct: 735 -DRSAIEVAY---SSANDLLDLIGDILDIARIESGRLALNPERANLRQLVESVLRVFDGL 790 Query: 679 ANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE 736 A +K + + + I +L D KQI N++SNAI FTP G +I + + + Sbjct: 791 ARQKDLDLVLELDSRINTDVLIDPLRFKQILSNLVSNAIKFTPMGRVKIALQAVDNPDPQ 850 Query: 737 VI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ + V+D+G+G++ + ++ +PF Q N+ Q+ G GLGL + +++ G Sbjct: 851 LLHLHITVQDSGIGISVEDQKRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMMGGNLS 910 Query: 794 IFSTPAKGTLIEI 806 + S P GT I + Sbjct: 911 LDSEPGNGTRISM 923 >gi|301384781|ref|ZP_07233199.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato Max13] gi|302060725|ref|ZP_07252266.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato K40] gi|302130813|ref|ZP_07256803.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 1123 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/267 (28%), Positives = 142/267 (53%), Gaps = 8/267 (2%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 SL + +I ++ L AK+ +E ++ KS ++ +SHE+RTPL +I+GF+++++ Sbjct: 652 SLLIQEIDAHEKTDQALQKAKEASEAANAAKSRYITGLSHELRTPLNSILGFTQILQRDT 711 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P P + + I RS + +L ++N LLD++KIE+GK+ L + E + + + Sbjct: 712 TTP---PHHQDPLATIMRSSSHLLSLINGLLDVAKIEAGKLKLEPTEILFQEFLHDLEKM 768 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 A EK + R +P ++ D + V+QI +N+L NA++FT S G++++ ++ Sbjct: 769 FAGTAQEKNLGFRLELEGRMPMVVRGDEKRVRQILINLLGNAVNFTDS-GEVVLRVSY-R 826 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E I + D+G+G+ ++E+ +PF + Q G GLGL + + + G Sbjct: 827 RETAIFDIVDSGIGIAPEQIERIFQPFER--GGQTRHDNGVGLGLTITRMLTALMGGALS 884 Query: 794 IFSTPAKGTLIEIIFPLYDTSHPHDCI 820 + STP +GT ++ L + P I Sbjct: 885 VSSTPGEGTHFKVRLFLSEVRVPKAVI 911 >gi|221066757|ref|ZP_03542862.1| PAS/PAC sensor signal transduction histidine kinase [Comamonas testosteroni KF-1] gi|220711780|gb|EED67148.1| PAS/PAC sensor signal transduction histidine kinase [Comamonas testosteroni KF-1] Length = 837 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/267 (30%), Positives = 146/267 (54%), Gaps = 14/267 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV--IKNQRFGP 617 D+++++ + A+ AE+ KS+F+A +SHE+RTPL +IIGF+E+ +++++ Sbjct: 579 DVTDFRAAEQATREARDAAEEAFRVKSEFVANMSHELRTPLQSIIGFAELGHLRSRK--- 635 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 +P++ E N I +G +L +VNDLLD++K+ES +H E + L + ++ Sbjct: 636 --SPQFSEMFNDIHSAGQRMLALVNDLLDVAKLESAVGVIHLERIDLRGLIRPIARELEP 693 Query: 678 YANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 ++K+I +R N P I AD +Q+ N+L+NAI F+P+ G++ + + Sbjct: 694 LQHQKQIDLRLDL-ENFPMIAKADPVRFQQVVRNMLANAIKFSPNHGRVDVIGRFDDHGN 752 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + D G G+ EL++ +PF Q ++ G GTGLGL + + ++DA G + Sbjct: 753 ICIDFSDQGPGIPPQELDQIFQPFVQSSKTKDGSG-GTGLGLAICRKIIDAMDGTISAKN 811 Query: 797 TPAKGTLIEIIFP---LYDTSHPHDCI 820 P G + I P +Y+T P + I Sbjct: 812 KPDGGAIFRITLPSRSVYET-QPGELI 837 >gi|159900990|ref|YP_001547237.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159894029|gb|ABX07109.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 581 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 102/375 (27%), Positives = 184/375 (49%), Gaps = 38/375 (10%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++ EATS+G+ ++ EG+++ N ++FGY ++IL F+E + Sbjct: 216 ALAEATSEGV-VLQDEGVVMDANERFGEMFGYHRDEILGHSLREFVEPQS---------- 264 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLR---------IIIKKLPFSS--CYSLTMHDISEW 564 L++ ++K G+ E + +LR ++ LP+S+ + DI+E Sbjct: 265 -----LQRAMQKYKDGAPYE--VTALRKDGSTFIALVLGTNLPYSNRVVRVAAVRDITEQ 317 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + +N L AK AE + KS FL+ VSHE+RTPL AI+G+SE+I P Sbjct: 318 RHFENLLLTAKDDAEAANRAKSTFLSTVSHELRTPLNAIVGYSEMIYEDLIDR-SMPELA 376 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 I + + +L +++ +L I+ +++ + L +E + L A+ +Q A + + Sbjct: 377 MDMTRIRSASDRLLSLIDGVLTITDLDAEVVRLEYETIDLALAIGSISDQLQAKAQDNKN 436 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST---THTSNEEVILRV 741 ++ + N I++D ++ I ++L NAI FT + G I IS H + + + + Sbjct: 437 TVQLLGSQNWGSIISDDHKLRMIIYHLLDNAIKFTHA-GLISISVQRLQHAAGGWLEIAI 495 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RDTG+G+ + + E+ +PF Q +S + EGTGLGL ++ + A G + S G Sbjct: 496 RDTGIGIAHEQFERIFEPFVQADSSATRQYEGTGLGLAVSMRLARALGGTIELDSRLGIG 555 Query: 802 TLIEIIFPLYDTSHP 816 + F L+ HP Sbjct: 556 S----TFTLHMPEHP 566 >gi|87308528|ref|ZP_01090668.1| FOG: CheY-like receiver [Blastopirellula marina DSM 3645] gi|87288620|gb|EAQ80514.1| FOG: CheY-like receiver [Blastopirellula marina DSM 3645] Length = 954 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 107/378 (28%), Positives = 189/378 (50%), Gaps = 26/378 (6%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L I++++ D I + + I N ++GY E+ L KP ++ P Sbjct: 177 RLAQIVDSSYDAIISRDVDDKITCWNAGADAVYGYQAEEALGKPISILF----PPTRREE 232 Query: 513 LTEILSLDLRQTLEKITLGST----KEEKLLSLRIIIKKLPFSS----CYSLTMHDISEW 564 EI D R +++T T ++ +++S+ I + L ++ S DISE Sbjct: 233 EPEIT--DARLHGKRLTQFETERRRRDGRIISVSITVSPLRDANERIIGVSTIERDISER 290 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K + +L AK AE+ + +S+FLA VSHEIRTP+ AIIG +++ + P Y+ Sbjct: 291 KFAERELQKAKAAAERANRARSEFLANVSHEIRTPMNAIIGMTKLTLAEDL-PEAVREYV 349 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E AN S + +L ++ND+LD SKIE+GK + +L + + + + A K + Sbjct: 350 ETANS---SAHTLLSLLNDILDFSKIEAGKFTIDRSEFNLRQTIDATMRALSERAFSKGL 406 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--EEVILR- 740 + + IP ++ D ++QI N++SNA+ FT G++++S EV +R Sbjct: 407 EVAIDYDPRIPEELIGDAIRLRQIITNLVSNAVKFTER-GEVLLSVKLLRRFPREVRIRF 465 Query: 741 -VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 + DTGVG+T + ++ +PF Q+ +S G+GLGL + +++ G+ + S P Sbjct: 466 TISDTGVGITPADQKRIFEPFTQVDSSSTRNFGGSGLGLTICHELLELMGGRLELNSEPG 525 Query: 800 KGTLIE--IIFPLYDTSH 815 G+ ++FP T+ Sbjct: 526 VGSRFSFALLFPRTRTAE 543 >gi|167745965|ref|ZP_02418092.1| hypothetical protein ANACAC_00660 [Anaerostipes caccae DSM 14662] gi|167654480|gb|EDR98609.1| hypothetical protein ANACAC_00660 [Anaerostipes caccae DSM 14662] Length = 852 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 84/244 (34%), Positives = 130/244 (53%), Gaps = 18/244 (7%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA-N 628 +L A++ A K S KS+FLA +SH+IRTP+ AI G + + + +P+ ++ Sbjct: 330 ELDKAQQKALKASKAKSEFLANMSHDIRTPMNAITGMTAIATAH----IDDPKQVKNCLR 385 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR----I 684 I S +L ++ND+LD+SKIESGK+ L E +SL E V +S++Q K+ + Sbjct: 386 KIALSSRHLLGLINDVLDMSKIESGKLTLTAEQISLREVVDGIVSIMQPQTKAKQQSFDV 445 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVI--- 738 I F N+ D + QI LN+LSNA +TP G I I E+ + Sbjct: 446 HIENIFTENV---WCDGVRLNQILLNLLSNATKYTPEKGSIRLFICEENSPRGEDYVRLH 502 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + VRD G+GM+ L+K + + + ++ + EG GLG+ + K +VDA G + S P Sbjct: 503 INVRDNGIGMSPEFLKKIYQSYSRADGTRTRKTEGAGLGMAITKYIVDAMDGTIDVQSEP 562 Query: 799 AKGT 802 KGT Sbjct: 563 NKGT 566 >gi|205352892|ref|YP_002226693.1| two-component sensor kinase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272673|emb|CAR37583.1| putative two-component sensor kinase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|309243420|gb|ADO51996.1| SsrA [Salmonella enterica subsp. enterica serovar Gallinarum] Length = 920 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 128/256 (50%), Gaps = 17/256 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L+ AKK AE+ + KS L +SHE+RTP+ ++G E+++ P IE Sbjct: 377 ERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQT-------TPLNIE 429 Query: 626 YANYIDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 D + N +L I+N+LLD S IESG LH E +L + +A+ +Q A K Sbjct: 430 QQGLADTARNCTLSLLAIINNLLDFSCIESGHFTLHMEETALLPLLDQAMQTIQGPAQSK 489 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ +RT ++P D ++QI +N+L NA+ FT +GG I T E++I V Sbjct: 490 KLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG--IRLTVKRHEEQLIFLV 547 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G G+ + + F Q + Q GTG+GL +A ++ G + S P G Sbjct: 548 SDSGKGIEIQQQSQIFTAFYQADTNSQ----GTGIGLTIASSLAKMMGGNLTLKSVPGVG 603 Query: 802 TLIEIIFPLYDTSHPH 817 T + ++ PL + P Sbjct: 604 TCVSLVLPLQEYQPPQ 619 >gi|319900586|ref|YP_004160314.1| histidine kinase [Bacteroides helcogenes P 36-108] gi|319415617|gb|ADV42728.1| histidine kinase [Bacteroides helcogenes P 36-108] Length = 657 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 137/254 (53%), Gaps = 12/254 (4%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D +Q +++L AK+ AE+ + KS F++ +SHEIRTPL +I+GF+ +++ + Sbjct: 403 IEDKKRLQQSEHELRLAKEKAEEGNRLKSAFISNMSHEIRTPLNSIVGFATILEEE---T 459 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 GN EY N I + +L+L ++ND+LD+S++ESG+ N +F+ + L V ++V Sbjct: 460 RGNENLKEYVNIISYNSDLLLKLINDILDLSRLESGRQNFNFQILDL---VPHCANIVAG 516 Query: 678 YANEKRILIRTSFANNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + I+ F ++ P I+A D ++Q+ +N++ NA+ FT G I+ + ++ Sbjct: 517 FQTNIAKGIKLGFKHSTPTIIAETDTTRLQQVLINLIGNAVKFTQKGSIILEVKPNNVSQ 576 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 E I V DTG G+ + + + F ++ Q GTGLGL + + ++ G+ +I Sbjct: 577 EWIFSVTDTGCGIPPEKQKVVFERFNKLDEYAQ----GTGLGLSICQITIENLGGRIWID 632 Query: 796 STPAKGTLIEIIFP 809 KG P Sbjct: 633 PEYTKGARFMFTLP 646 >gi|307153837|ref|YP_003889221.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306984065|gb|ADN15946.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1053 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/239 (33%), Positives = 132/239 (55%), Gaps = 6/239 (2%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q +L+ AK+ AE + KS F+A +SHE+R+PL AI+GFS+++ G L E Sbjct: 580 QRTAELAQAKEKAEVANQTKSTFIANMSHELRSPLNAILGFSQLMAAS--GDLSAADQ-E 636 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I+RSG +L+++N++L I+KIE+GK L+ + L + E + L A + + Sbjct: 637 NVEIINRSGEYLLNLINNILTIAKIEAGKTTLNPKDFDLYHLLGEIDEMFDLEAATRGLK 696 Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRD 743 + ++PR + D ++Q+ +N+LSNA+ FT G + + T + ++ RV+D Sbjct: 697 LNFEIPADVPRYVNTDEVKLRQVLINLLSNALKFTHVGKIGVYVQTEAKTPTTLLFRVQD 756 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TGVG+ EL+ K F Q + Q + +GTGLGL +++ V G F + S GT Sbjct: 757 TGVGIAQSELDLLFKTFSQTQSGQNSQ-DGTGLGLAISRQFVQLMGGDFSVESRVGVGT 814 >gi|119468956|ref|ZP_01611981.1| hypothetical protein ATW7_04312 [Alteromonadales bacterium TW-7] gi|119447608|gb|EAW28875.1| hypothetical protein ATW7_04312 [Alteromonadales bacterium TW-7] Length = 886 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 131/229 (57%), Gaps = 11/229 (4%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI---EYANYIDRSG 634 AE+ + KS FLA +SHEIRTPLTAI+GF+E + L N + + ++ + I R+ Sbjct: 402 AEQANQLKSRFLANMSHEIRTPLTAIMGFTEQL-------LHNDKIVNDKQHLSTILRNS 454 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L+++N++LD+SKIE+ K+ + V++ + V + S++ A EKR+ + F I Sbjct: 455 KHLLELINNILDLSKIEAEKLAVEQASVNVVQLVHDIESIITPLAQEKRLELNIIFDLPI 514 Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 P+ I D+ +KQI +N+ +NA+ FT G I H + + + DTG+GM+ +++ Sbjct: 515 PQTIYTDVTRLKQILINVANNAVKFTEQGHVSICVHYHAKSNLIEFVITDTGIGMSEHQI 574 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + KPF Q + R GTGLGL ++K + + G + S +G+ Sbjct: 575 SRVFKPFEQADATTTRRFGGTGLGLCISKNLANLLGGDIKLESEVGEGS 623 >gi|71280971|ref|YP_268556.1| sensor protein TorS [Colwellia psychrerythraea 34H] gi|71146711|gb|AAZ27184.1| sensor protein TorS [Colwellia psychrerythraea 34H] Length = 1000 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/247 (32%), Positives = 129/247 (52%), Gaps = 13/247 (5%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK+ A++ + KS FLA +SHEIRTP+ +IG E++ + + +YA I S Sbjct: 459 AKQQADEANRAKSVFLASMSHEIRTPMNGMIGTLELLTDTKL----TSEQQKYAQTILYS 514 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +LDI+ND+LD SKIE+G + L + + L + + + L++ A K + + N Sbjct: 515 GESLLDILNDILDYSKIEAGHIALSYRAIDLGKLGEDVVHLMRARAQNKSLQLHFEKKGN 574 Query: 694 IPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIIST-----THTSNEEVILRVRDTGVG 747 I +ADL ++QI +N+++NAI FT G I++S + + + EV V DTG G Sbjct: 575 IENWRVADLGKLRQILINLINNAIKFTQRGS-IVLSIGVNDESSSGDSEVTFSVTDTGCG 633 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + + F Q+ N Q GTGLGL + + +V A G + S +G+ Sbjct: 634 IAKDKQADVFQAFTQVDNLQ--SAVGTGLGLAICQRLVSAMQGTLSLESEENRGSCFAFT 691 Query: 808 FPLYDTS 814 PL S Sbjct: 692 IPLARAS 698 >gi|168761345|ref|ZP_02786352.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4501] gi|217327801|ref|ZP_03443884.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. TW14588] gi|189368285|gb|EDU86701.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4501] gi|217320168|gb|EEC28593.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. TW14588] Length = 949 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|161367569|ref|NP_288798.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. EDL933] gi|162139775|ref|NP_311134.2| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. Sakai] gi|168749626|ref|ZP_02774648.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4113] gi|168754970|ref|ZP_02779977.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4401] gi|168767843|ref|ZP_02792850.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4486] gi|168773059|ref|ZP_02798066.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4196] gi|168780072|ref|ZP_02805079.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4076] gi|168787129|ref|ZP_02812136.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC869] gi|168798388|ref|ZP_02823395.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC508] gi|195935599|ref|ZP_03080981.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. EC4024] gi|208807530|ref|ZP_03249867.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4206] gi|208813546|ref|ZP_03254875.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4045] gi|208818558|ref|ZP_03258878.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4042] gi|209396281|ref|YP_002271632.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4115] gi|254794118|ref|YP_003078955.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. TW14359] gi|261223323|ref|ZP_05937604.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. FRIK2000] gi|261259127|ref|ZP_05951660.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. FRIK966] gi|291283469|ref|YP_003500287.1| Sensor histidine kinase/response regulator RcsC [Escherichia coli O55:H7 str. CB9615] gi|187771011|gb|EDU34855.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4196] gi|188016099|gb|EDU54221.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4113] gi|189002160|gb|EDU71146.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4076] gi|189357730|gb|EDU76149.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4401] gi|189362893|gb|EDU81312.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4486] gi|189372926|gb|EDU91342.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC869] gi|189379027|gb|EDU97443.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC508] gi|208727331|gb|EDZ76932.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4206] gi|208734823|gb|EDZ83510.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4045] gi|208738681|gb|EDZ86363.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4042] gi|209157681|gb|ACI35114.1| sensor histidine kinase/response regulator RcsC [Escherichia coli O157:H7 str. EC4115] gi|254593518|gb|ACT72879.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. TW14359] gi|290763342|gb|ADD57303.1| Sensor histidine kinase/response regulator RcsC [Escherichia coli O55:H7 str. CB9615] gi|320192155|gb|EFW66800.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str. EC1212] gi|320641047|gb|EFX10526.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. G5101] gi|320657656|gb|EFX25454.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663112|gb|EFX30425.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O55:H7 str. USDA 5905] gi|320668012|gb|EFX34915.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H7 str. LSU-61] gi|326339572|gb|EGD63383.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str. 1125] gi|326344033|gb|EGD67794.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str. 1044] Length = 949 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|149909590|ref|ZP_01898243.1| hypothetical protein PE36_12412 [Moritella sp. PE36] gi|149807294|gb|EDM67247.1| hypothetical protein PE36_12412 [Moritella sp. PE36] Length = 903 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 88/280 (31%), Positives = 146/280 (52%), Gaps = 11/280 (3%) Query: 529 TLGSTKEEKLLSLRIIIK-KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 TL +E+ SL+I I FS+ + I E + ++ AK+ AE+ + KS Sbjct: 325 TLTRIEEKHDYSLKIKIDGNDEFSAFAKMLNKLIEERHINEKQIIQAKESAEQANVAKSS 384 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHEIRTPL +IG S ++ N + P ++ I+ S +L ++ND+LD Sbjct: 385 FLANMSHEIRTPLNGVIGMSNILSNTKL----TPSQQDHLAIIENSSQTLLILINDILDF 440 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQ 706 SKIESG + + L E + + ++++ A K + + A +P L D ++Q Sbjct: 441 SKIESGHLAITNHRCDLREVIYDTVAIITPSAAAKNLDFSVNIAPELPNEFLLDEHRLRQ 500 Query: 707 IALNILSNAIHFTPSGGQIIISTT----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 + +N+LSNA+ FT S GQ+ ++ + S E+ V DTG G+ + +K +PF Q Sbjct: 501 VLMNLLSNAVKFTDS-GQVSLTLSSKVIENSRSELYFSVADTGTGIEEDKQQKIFEPFTQ 559 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 S + GTGLGL ++ +V+ G+ + ST +G+ Sbjct: 560 EDGSITRQFGGTGLGLAISTQLVELMGGEIGVDSTKGQGS 599 >gi|197116777|ref|YP_002137204.1| PAS/PAC domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197086137|gb|ACH37408.1| sensor histidine kinase response regulator, PAS and PAC domain-containing protein [Geobacter bemidjiensis Bem] Length = 647 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/255 (33%), Positives = 133/255 (52%), Gaps = 8/255 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI++ K + +L A++ AE S K++FLA +SHEIRTP+ +IIG ++++ Sbjct: 153 DITDRKGAEMELVLAREAAEAASKAKTEFLANMSHEIRTPMNSIIGMTQLLAYTEL---- 208 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + EY I S +L I+ND+LD+SK+E+GK+ L SL ++++E I A Sbjct: 209 SAEQKEYVEGILTSSEGLLAIINDILDLSKVEAGKIELESRNFSLRQSINEIIRTQTAAA 268 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 +EK + ++ S IP ++ D +KQ+ LNI+ NAI FT SG + EE Sbjct: 269 HEKGLQLKVSIPEEIPDAVVGDRLRLKQVLLNIIGNAIKFTASGSIAVTVALAEKKEEAA 328 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V DTG+G+ L++ PF Q S R GTGLGL ++ +V G+ + Sbjct: 329 RITFSVTDTGIGIAPESLDRIFAPFAQEDTSTTRRYGGTGLGLSISTKLVRLMGGRIWAE 388 Query: 796 STPAKGTLIEIIFPL 810 S G+ P Sbjct: 389 SRKNAGSTFHFEIPF 403 >gi|312890874|ref|ZP_07750403.1| histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311296657|gb|EFQ73797.1| histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 510 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/250 (32%), Positives = 138/250 (55%), Gaps = 10/250 (4%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 I + K+ + +L +K IA K + KS FL+ +SHEIRTP+ A+IGF+ ++ + P Sbjct: 109 QQIDKAKELETQLILSKDIAVKAALTKSQFLSTMSHEIRTPMNAVIGFTHLL--LQLSP- 165 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA-ISLVQL 677 P +EY + S +L ++ND+LD SKIE+G++ S+ + VS ++L+Q Sbjct: 166 -RPEQMEYLKLLKFSAENLLVLINDILDFSKIEAGRVEFEEADFSIKDLVSNIRLALLQ- 223 Query: 678 YANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 ANEK I ++ +++P ++ D + QI N++SNA+ FT G I+++ H ++ Sbjct: 224 KANEKNIQLKLLMDHDLPDVVKGDPVRIGQILTNLISNAVKFTKEGKVTIVASLHKKYDD 283 Query: 737 ---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 V V DTG+G+ +L+ F Q + + GTGLGL + K +++ + Sbjct: 284 YTIVDFEVIDTGIGIAANKLDDIFDSFTQAASDTTRKFGGTGLGLTITKRLLELMNSEIK 343 Query: 794 IFSTPAKGTL 803 + S P KG++ Sbjct: 344 VKSEPGKGSV 353 >gi|309790730|ref|ZP_07685279.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308227221|gb|EFO80900.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 546 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 126/236 (53%), Gaps = 4/236 (1%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE + KS F+A VSHE+RTPL AI+G+S+++ + L P E + I +G + Sbjct: 298 AEAANRAKSSFIANVSHELRTPLNAILGYSQIL-SMDIKQLKRPDLEESIDQITTAGQHL 356 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 LD++ND++D+S+IE G+M+L + V L + I+ Q A + N+I + Sbjct: 357 LDLINDVIDLSRIEGGQMSLSYSYVDLASFMQHLINANQNLAALNHNSLVLVCPNDIGLV 416 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELE 754 + D V++I LN++SNA FT G I H S+E +++ VRDTG+G+ ++E Sbjct: 417 MIDAPKVRRILLNLISNACKFTDHGQITCIVELHRSSEADTMLVIAVRDTGIGIHPDQIE 476 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F Q +S R G G+GL L++ + G+ + S P G+ + P+ Sbjct: 477 DLFNQFIQADSSSTRRYGGLGMGLTLSRHLCQLMGGQISVESRPGYGSTFRVHVPV 532 >gi|288941100|ref|YP_003443340.1| signal transduction histidine kinase with CheB and CheR activity [Allochromatium vinosum DSM 180] gi|288896472|gb|ADC62308.1| signal transduction histidine kinase with CheB and CheR activity [Allochromatium vinosum DSM 180] Length = 1994 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 128/247 (51%), Gaps = 8/247 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ KQ + LS A+ A + KS FLA +SHEIRTP+ A++GF +++ + Sbjct: 1215 DITALKQVEQALSEARDQANASNLAKSAFLANMSHEIRTPMNAVLGFCYLLEQRAL---- 1270 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +P + I +G +L ++ND+LD SKIE+G + + P L E + ++ A Sbjct: 1271 DPTSADLVRKIHGAGQALLGLINDILDFSKIEAGHLEIESTPFQLSELLDTLAGIMTAAA 1330 Query: 680 NEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV 737 +K + L+ T I ++ D ++Q+ +N+L NAI FT G ++ + + + Sbjct: 1331 GDKPLELVLTPPGEGIEGLIGDAGRLQQVLINLLGNAIKFTARGEVELRVEQVAEHGDRL 1390 Query: 738 ILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 LR VRDTG+G+ F Q NS R GTGLGL +++ +V G+ + Sbjct: 1391 DLRFTVRDTGIGIAPEHQTNIFNAFSQADNSIGRRFGGTGLGLAISQRLVHMMGGRLELE 1450 Query: 796 STPAKGT 802 ST +G+ Sbjct: 1451 STLGQGS 1457 >gi|115523225|ref|YP_780136.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] gi|115517172|gb|ABJ05156.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] Length = 1039 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 137/255 (53%), Gaps = 12/255 (4%) Query: 556 LTMHDISEWKQE----KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 L +++ KQE L AK+ AE S KSDFLA +SHEIRTP++ ++G ++++ Sbjct: 613 LARNNLESQKQELVAKSADLELAKETAEAASRAKSDFLAIMSHEIRTPMSGMVGMIDLLR 672 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 PL YA S N +L + ND+LD SK+E+G++ ++ + A Sbjct: 673 ET---PL-TAEQKGYAEIAKESVNSLLGVTNDILDFSKLEAGELKAEAIDFDIEHTIGGA 728 Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 ISL++ A K++ IRT +P+ ++ D ++QI LN+++NAI FT G + ++ Sbjct: 729 ISLMKAKAQAKQLDIRTVLTPGLPKWLVGDPSRIRQILLNLINNAIKFTEQGAISVKASY 788 Query: 731 HTSNEEVI-LRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 H+ +++ I LR+ DTG+G+ ++ PF Q S + GTGLGL + K + Sbjct: 789 HSLDDDKIELRIEIVDTGIGIPMEVQQRLFNPFVQADTSISRKYGGTGLGLAICKQLALM 848 Query: 788 NMGKFYIFSTPAKGT 802 G+ + S P G+ Sbjct: 849 MGGEIGVRSGPEPGS 863 >gi|260597946|ref|YP_003210517.1| hypothetical protein CTU_21540 [Cronobacter turicensis z3032] gi|260217123|emb|CBA30915.1| hypothetical protein CTU_21540 [Cronobacter turicensis z3032] Length = 877 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 132/256 (51%), Gaps = 5/256 (1%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI+ K+ + A A + KS FLA +SHEIRTP+ I+G +++ + Sbjct: 224 TLQDITRRKEAELISRDAANAARAANEAKSAFLANMSHEIRTPMNGILGMTQLCLDTEL- 282 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 N EY + + S +L I++D+LD SKIE+GK+ LH E V+L + + + Sbjct: 283 ---NGEQREYLSLVMSSAQSLLHIIDDILDFSKIEAGKIVLHEEYVALRPFIQSLVRPLM 339 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A+EK+I + +P ++ D+ ++Q+ N+LSNA+ FTP G ++ + Sbjct: 340 PLASEKQIELLVEVDERVPEMMRVDVVRLRQVLTNLLSNALKFTPQGEILLAVAPAAQDG 399 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 E RVRD+G+G+ + + + F Q S R GTGLGL ++ +V G+ + Sbjct: 400 EWRFRVRDSGIGIPPEKQQVIFEAFSQADTSTTRRYGGTGLGLTISARLVAMMGGQLTVA 459 Query: 796 STPAKGTLIEIIFPLY 811 S +G+ PL+ Sbjct: 460 SEANQGSEFSFTLPLH 475 >gi|320646560|gb|EFX15476.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H- str. 493-89] gi|320651931|gb|EFX20306.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia coli O157:H- str. H 2687] Length = 949 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTVRIPLYGAQYPQ 697 >gi|307268694|ref|ZP_07550063.1| PAS domain S-box [Enterococcus faecalis TX4248] gi|306515006|gb|EFM83552.1| PAS domain S-box [Enterococcus faecalis TX4248] Length = 609 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 97/370 (26%), Positives = 176/370 (47%), Gaps = 31/370 (8%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 ME E +L S+L +DG+ +R G +++ N L E+++ L+ Sbjct: 254 MEAERNRLDSVLTHMTDGVIATDRRGKVITINEMALSLLNVKNENVIGTSLLELLDIEED 313 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYSLTMHDIS 562 + L E L + ++ S +EE + +R+ I ++ F + +HD++ Sbjct: 314 YTLRKLLEEPDELLIDRST------SDREEDQMIIRVDFTMIRRESGFITGLVCVLHDVT 367 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E QEKN E+E + +F++ VSHE+RTPLT++ + E + G NP Sbjct: 368 E--QEKN---------ERE---RREFVSNVSHELRTPLTSMRSYIEALSE---GAWENPE 410 Query: 623 YI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN- 680 + + ++ ++NDLL++S+++SG +L E V+ +E ++ + + Sbjct: 411 IAPNFLKVTLEETDRMIRMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIEN 470 Query: 681 -EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 +K IR F + D V Q+ NIL+NAI ++P GG I T N V+ Sbjct: 471 EQKNYKIRREFTKRDLWVELDTDKVIQVLDNILNNAIKYSPDGGVITCRLVETHNN-VVF 529 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 + D G+G+ +L K + F ++ ++ GTGLGL ++K ++ A+ G ++ ST Sbjct: 530 SISDQGLGIPKKDLGKVFERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEG 589 Query: 800 KGTLIEIIFP 809 +G+ I P Sbjct: 590 EGSTFYISLP 599 >gi|209765618|gb|ACI81121.1| sensor for ctr capsule biosynthesis [Escherichia coli] Length = 933 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 7/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 426 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 484 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 485 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYL 541 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + Sbjct: 542 PLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGD 599 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 600 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 659 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ + PLY +P Sbjct: 660 SEPGMGSQFTVRIPLYGAQYPQ 681 >gi|12516556|gb|AAG57353.1|AE005454_1 sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsB [Escherichia coli O157:H7 str. EDL933] gi|13362576|dbj|BAB36530.1| sensor for ctr capsule biosynthesis [Escherichia coli O157:H7 str. Sakai] gi|209765620|gb|ACI81122.1| sensor for ctr capsule biosynthesis [Escherichia coli] gi|209765622|gb|ACI81123.1| sensor for ctr capsule biosynthesis [Escherichia coli] gi|209765624|gb|ACI81124.1| sensor for ctr capsule biosynthesis [Escherichia coli] gi|209765626|gb|ACI81125.1| sensor for ctr capsule biosynthesis [Escherichia coli] Length = 933 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 7/262 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 426 VLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 484 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 485 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYL 541 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + Sbjct: 542 PLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGD 599 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 600 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 659 Query: 796 STPAKGTLIEIIFPLYDTSHPH 817 S P G+ + PLY +P Sbjct: 660 SEPGMGSQFTVRIPLYGAQYPQ 681 >gi|85710244|ref|ZP_01041309.1| sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain [Erythrobacter sp. NAP1] gi|85688954|gb|EAQ28958.1| sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain [Erythrobacter sp. NAP1] Length = 999 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 95/387 (24%), Positives = 184/387 (47%), Gaps = 46/387 (11%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L + E +D + ++R+ + + + +V + G P ED++ P ++ + + Sbjct: 341 ELGLLAETITDAVLRLDRDRVCIYASPSVEDVMGRPPEDLVGHPIASRGPEDAHARIESA 400 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRII---------------IKKLPFSS---CY 554 L +LS G + +E++ R++ I P + Sbjct: 401 LDSLLS------------GQSDKERITYRRLLDDEEGTPVFIEADCAIVLDPITGERDGV 448 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 ++ D++E + + L+ A++ AE + KS+FLA +SHEIRTP+ ++GF+E++ Sbjct: 449 VVSARDVTERVELELLLTRARRHAENAARAKSEFLANMSHEIRTPMNGVLGFAELMLQGD 508 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P N R+ E I SG ++ ++ND+LD+SKIE+G++ + +PV L ++E + L Sbjct: 509 LEP-DNRRHTE---MIVESGRSMMLLLNDILDLSKIEAGQIAIDSQPVDLVSTLAECVQL 564 Query: 675 VQLYANEKRILIRTSFANNI----------PRILADLRSVKQIALNILSNAIHFTPSGGQ 724 A K + + + ++ + P + D ++QI LN++ NA+ FT G Sbjct: 565 HLPNAEGKGLRLNFTASDAVKLGGEGARENPWVATDALRLRQIVLNLIGNAVKFTEKGS- 623 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + E+ + V+DTG+G+ ++ PF Q N R GTGLGL +++ + Sbjct: 624 -VDVQLSIQAEQFRVDVKDTGIGIGAKRVQTIFAPFTQGENDTSRRFGGTGLGLTISRQL 682 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLY 811 + G+ + S G+ +I P + Sbjct: 683 AELLGGQIEVCSEVGIGSTFSLILPAH 709 >gi|260173568|ref|ZP_05759980.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|315921835|ref|ZP_07918075.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|313695710|gb|EFS32545.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 1007 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/254 (31%), Positives = 129/254 (50%), Gaps = 11/254 (4%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + D++E ++ +L AK AE+ KS FLA +SHEIRTPL AI+GFSE++ Sbjct: 615 IRVDDVTEREKMIKELQEAKHQAEQSDKLKSAFLANMSHEIRTPLNAIVGFSELM----- 669 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G +Y I+ + L+L ++ND+LD+SK+E+G + L +EP L E + + Sbjct: 670 AYAGEEEKADYIQIINSNNELLLKLINDILDLSKLEAGSVELKYEPFDLSEHFENMFTSM 729 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + I++ + ++ D V QI N ++NAI +T G I + Sbjct: 730 KQRLKNPDIVLTEINPYHCCQVTLDRNRVAQIITNYVTNAIKYTSKGS--IKMGYACKDG 787 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V V+DTG+G+ + + K + F ++ Q GTGLGL + KA+ +A GK Sbjct: 788 GVYFYVKDTGIGIADDKKGKVFQRFEKLDEFAQ----GTGLGLSICKAIAEAMGGKVGFE 843 Query: 796 STPAKGTLIEIIFP 809 S +G+L P Sbjct: 844 SVHNEGSLFWAFLP 857 >gi|254475748|ref|ZP_05089134.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11] gi|214029991|gb|EEB70826.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11] Length = 742 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 96/388 (24%), Positives = 194/388 (50%), Gaps = 42/388 (10%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 E ++ ++ ++++ E +L + E +D + +++ +G I N A S++ GY ++ + K Sbjct: 218 EQINAKLQAQQLQSE--RLAVVAENANDSVFLMDSDGRITWVNEAFSRITGYQYDEAIGK 275 Query: 496 -PFTVFLEQNTPSVMNHYL------TEILSLDLRQT--------LEKITLGSTKEEKLLS 540 P + ++T + L + L++R LE + +E+ + Sbjct: 276 LPGELLNGEDTDQAVIDALEAGRATGKPFRLEIRNRRKDGQLIWLETNQVPMLREDGSVE 335 Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 I +++ D++ KQ + +L+ A+ AE+ + KS+FLA +SHEIRTP+ Sbjct: 336 TVIAVER------------DMTAAKQYEQQLNDARIAAEEGARVKSEFLATMSHEIRTPM 383 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH-- 658 +IG +++++ + YA+ I S +L ++ND+LD+SK+++G++ L Sbjct: 384 NGVIGMAQMLERTEL----DEEQRLYADTILGSARTLLSLINDVLDLSKMDAGEVTLSEV 439 Query: 659 -FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAI 716 F+P + + + L + A EK I + A ++P++L D R ++Q+ LN++ NA+ Sbjct: 440 DFDPRA---CFQQTLKLFEPQAQEKGIQLHLDVAEDVPQLLNGDDRRLRQVILNLVGNAV 496 Query: 717 HFTPSGGQIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 FT G + + + V LR V+D+G+G+ + + + F Q + R GT Sbjct: 497 KFTDDGAVAVSVNADHTRDHVTLRFSVKDSGIGIAPEQQSRIFERFSQADAAITRRFGGT 556 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GLGL +++ + +A G + S +G Sbjct: 557 GLGLTISRLLCEAMGGDITVRSELGQGA 584 >gi|153011989|ref|YP_001373201.1| multi-sensor hybrid histidine kinase [Ochrobactrum anthropi ATCC 49188] gi|151563877|gb|ABS17372.1| multi-sensor hybrid histidine kinase [Ochrobactrum anthropi ATCC 49188] Length = 1141 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 135/237 (56%), Gaps = 3/237 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ S +KSDFLA +SHE+RTPL + + ++++ + L + + ++YA I SGN +L Sbjct: 469 ERSSQYKSDFLANMSHELRTPLNSSLILAKLLADNPHENLTDEQ-VKYARTIQSSGNDLL 527 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++ND+LD+SKIE+G + + E S+ + + + A+EK++ S ++P+ Sbjct: 528 NLINDILDLSKIEAGHVEIQPEEASVVRLTNGLRQMFEPVASEKQLEFIISLDEHLPKTF 587 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D R ++QI N++SNAI FT G ++ +S +++++ V D+G+G+ +L Sbjct: 588 ETDPRRLEQILKNLISNAIKFTEKG-KVELSVRPQGSDKIVFSVADSGIGIAEDQLNSIF 646 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + F Q ++ R GTGLGL +++ +V G + S P +G+ + PL S Sbjct: 647 EAFHQADSTISRRFGGTGLGLSISRQLVRLLAGTIAVESKPGQGSRFSVTLPLRQMS 703 >gi|16329802|ref|NP_440530.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803] gi|1652287|dbj|BAA17210.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803] Length = 974 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 100/383 (26%), Positives = 182/383 (47%), Gaps = 36/383 (9%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 + ME + L +I++ +DG+ +I+ G I N A+ +F ++L + Sbjct: 600 KTMENTLADLTAIVDNLADGLLVIDLFGRITRYNPALLAMFDLEGLELLGAGVDAYF--- 656 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD-ISE 563 P +N L + + + + L ++ + L S+T H+ E Sbjct: 657 -PETLNQLLAKPEREEQKLVTADVELSQGRQGQAL-------------ITSITSHENGCE 702 Query: 564 WKQEKNKLSHAKKIA-EKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIK---NQRFGP- 617 + Q + + + E+E K+DFLA VSHE+RTPLT+I+GF+ VI+ N+ P Sbjct: 703 YPQCLGAVIMIRDVTHEREVERMKTDFLATVSHELRTPLTSILGFATVIQDKLNRVIIPE 762 Query: 618 --LGNP-------RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 L P R + I+ + ++ND+LDI+K+E+G+ + +P ++ + Sbjct: 763 LDLAQPHLGKATERVMRNLAIIESEAQRLTVLINDVLDIAKMEAGQESWQEQPCAIGPII 822 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 AI+ + A +K I ++ +P + D + Q+ LN+LSNA+ FTP G +I + Sbjct: 823 ERAIATITPQAQKKNISLQGDLEPGLPDFIGDENRILQVVLNLLSNAVKFTPKG--LITA 880 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDA 787 +H + + + D G G+ + EK +PF Q + +GTGLGLP+ K +V+ Sbjct: 881 RSHFHQNYLWVEIIDHGPGIHPADQEKIFEPFQQGGGDVLTDKPQGTGLGLPICKKIVEH 940 Query: 788 NMGKFYIFSTPAKGTLIEIIFPL 810 + G + S+ +G+ P+ Sbjct: 941 HGGTIGVNSSLGRGSTFYFSLPV 963 >gi|331642848|ref|ZP_08343983.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli H736] gi|331039646|gb|EGI11866.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent C) [Escherichia coli H736] Length = 775 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 271 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 329 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 330 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 386 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 387 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRADGDYLS 444 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 445 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 504 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 505 GMGSQFTVRIPLYGAQYPQ 523 >gi|129306887|gb|ABO30406.1| GacS [Pseudomonas sp. CM1'A2] gi|129306889|gb|ABO30407.1| GacS [Pseudomonas sp. F113] gi|129306895|gb|ABO30410.1| GacS [Pseudomonas sp. K94.31] gi|129306909|gb|ABO30417.1| GacS [Pseudomonas sp. Q65c-80] Length = 204 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 125/206 (60%), Gaps = 8/206 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y I++S + +L I+N++ Sbjct: 3 KSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQLDYLGTIEKSADSLLGIINEI 58 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRTSFANNIPRILADLRS 703 LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ + + ++ D Sbjct: 59 LDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLSLVGDPLR 118 Query: 704 VKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 +KQI N++SNAI FT G + ++ H + ++ + ++DTG+G++N ++ + F Sbjct: 119 LKQILTNLVSNAIKFTREGTIVARAMLEDEHEDSVQLRISIQDTGIGLSNQDVRALFQAF 178 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVD 786 Q NS + GTGLGL ++K +V+ Sbjct: 179 SQADNSLSRQPGGTGLGLVISKRLVE 204 >gi|254229817|ref|ZP_04923223.1| tmao reductase sytem sensor tors [Vibrio sp. Ex25] gi|262395617|ref|YP_003287470.1| sensor protein TorS [Vibrio sp. Ex25] gi|151937653|gb|EDN56505.1| tmao reductase sytem sensor tors [Vibrio sp. Ex25] gi|262339211|gb|ACY53005.1| sensor protein TorS [Vibrio sp. Ex25] Length = 987 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/261 (31%), Positives = 130/261 (49%), Gaps = 14/261 (5%) Query: 562 SEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 S+ KQ +L + A+K AE+ S KS FLA +SHEIRTP+ ++G + ++ + Sbjct: 440 SQLKQANRRLNEEVLNHAKARKQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLIDSG 499 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P+ YA I+RSG +L I+ND+LD SKIE+G + + L + V + L Sbjct: 500 LNPIQK----RYAEIINRSGKTLLAILNDVLDYSKIEAGHLEIRHMGFDLHQMVEDTFQL 555 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHT 732 + A EKR+L +++ R D+ + Q+ N++ NAI FT G I +S Sbjct: 556 MNSRAQEKRLLFSYHIESDVSRYWKGDVTRISQVLNNLVGNAIKFTDEGEIDIYVSLNPE 615 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 +V+ V DTG+G+ + F Q G GTGLGL ++K +++A G Sbjct: 616 DESQVLFEVSDTGIGIAKKDQRTLFDAFTQAEGGMSQTG-GTGLGLAISKRIIEAMGGIL 674 Query: 793 YIFSTPAKGTLIEIIFPLYDT 813 + S G+ PL ++ Sbjct: 675 EVDSEEGHGSRFWFSIPLEES 695 >gi|288918260|ref|ZP_06412614.1| GAF sensor hybrid histidine kinase [Frankia sp. EUN1f] gi|288350297|gb|EFC84520.1| GAF sensor hybrid histidine kinase [Frankia sp. EUN1f] Length = 1065 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 143/263 (54%), Gaps = 16/263 (6%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I + +QE + + +A K +KS+FLA +SHE+RTPL +++ + ++ P Sbjct: 463 EIEQARQEIEERAQQLALASK---YKSEFLANMSHELRTPLNSLLVLARLLAQN---PTR 516 Query: 620 N--PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 N P+ +E+AN I +G+ +L ++ND+LD+SK+E+GKM++H E L + V + + Q Sbjct: 517 NLTPKQVEFANVIHSAGSDLLQLINDILDLSKVEAGKMDVHREWADLGKLVDDLQATFQP 576 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTH---- 731 EK + A ++P R+ D + ++Q+ N+LSNA+ FT G + I T+H Sbjct: 577 LTAEKGLDFAVEVAPDVPTRLFTDEQRLEQVLRNLLSNAVKFTEDGQVALRIHTSHPLEP 636 Query: 732 --TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + ++ V DTGVG+++ L++ F Q + + GTGLGL +++ + Sbjct: 637 DSGATSKIAFAVVDTGVGISDENLKRIFGAFQQGDGTTSRKYGGTGLGLSISREVAALLD 696 Query: 790 GKFYIFSTPAKGTLIEIIFPLYD 812 G + S +G+ + PL D Sbjct: 697 GDLRVESEFGRGSTFTLYLPLDD 719 >gi|260775203|ref|ZP_05884101.1| BarA sensory histidine kinase [Vibrio coralliilyticus ATCC BAA-450] gi|260608904|gb|EEX35066.1| BarA sensory histidine kinase [Vibrio coralliilyticus ATCC BAA-450] Length = 927 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 135/252 (53%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K + L N + +Y Sbjct: 275 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTK----LTNSQA-DYLQ 329 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L+I+ND+LD SK+E+GK+ L P E + E +SL A+EK + + Sbjct: 330 TIEKSANNLLNIINDILDFSKLEAGKLALENIPFEFQETLEEVVSLQATSAHEKGLELTL 389 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDT 744 IP ++ D ++Q+ N++ N+I FT G I + E+ + VRDT Sbjct: 390 KVDPKIPAGLVGDPLRIQQVLTNLVGNSIKFTERGNIDISVELRSQKEDAVELQFMVRDT 449 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 450 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTF 509 Query: 805 EIIFPLYDTSHP 816 L T P Sbjct: 510 WFTLRLNSTDMP 521 >gi|325981380|ref|YP_004293782.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212] gi|325530899|gb|ADZ25620.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212] Length = 916 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 87/261 (33%), Positives = 136/261 (52%), Gaps = 11/261 (4%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + +L AK+ AE S KS+FLA +SHEIRTP+ I+G +E++ + N Sbjct: 247 EVTKRTAELVLAKESAEAASKAKSEFLATMSHEIRTPMNGILGMTELLLQTQL----NRD 302 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +A + SG +L I+ND+LD SKIES M L L + + + +++ A++K Sbjct: 303 QQRFAETVQSSGRHLLGIINDILDFSKIESDHMELESIDFDLVQLIEDTLAMFAQPADKK 362 Query: 683 RILIRTSFA--NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST--THTSNEEVI 738 + + F N + D ++QI N++SNAI FT S G+++I T + V Sbjct: 363 GLELAAQFIPPNRAFMVRGDSFRLRQIFANLISNAIKFT-SQGEVVIRTQLCEAAGSRVN 421 Query: 739 LR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 LR V DTG+G+ +K + F Q S + GTGLGL + K +++ G +I S Sbjct: 422 LRICVEDTGIGIPPEYHKKIFQQFSQADGSTTRQYGGTGLGLTICKKLLELMGGSIHIDS 481 Query: 797 TPAKGTLIEIIFPLYDTSHPH 817 TP +GT +I L ++ H Sbjct: 482 TPGQGTKFQINLELEKSALEH 502 >gi|160886321|ref|ZP_02067324.1| hypothetical protein BACOVA_04329 [Bacteroides ovatus ATCC 8483] gi|156108206|gb|EDO09951.1| hypothetical protein BACOVA_04329 [Bacteroides ovatus ATCC 8483] Length = 1007 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/254 (31%), Positives = 129/254 (50%), Gaps = 11/254 (4%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + D++E ++ +L AK AE+ KS FLA +SHEIRTPL AI+GFSE++ Sbjct: 615 IRVDDVTEREKMIKELQEAKHQAEQSDKLKSAFLANMSHEIRTPLNAIVGFSELM----- 669 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G +Y I+ + L+L ++ND+LD+SK+E+G + L +EP L E + + Sbjct: 670 AYAGEEEKADYIQIINSNNELLLKLINDILDLSKLEAGSVELKYEPFDLSEHFENMFTSM 729 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + I++ + ++ D V QI N ++NAI +T G I + Sbjct: 730 KQRLKNPDIVLTEINPYHCCQVTLDRNRVAQIITNYVTNAIKYTSKGS--IKMGYACKDG 787 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V V+DTG+G+ + + K + F ++ Q GTGLGL + KA+ +A GK Sbjct: 788 GVYFYVKDTGIGIADDKKGKVFQRFEKLDEFAQ----GTGLGLSICKAIAEAMGGKVGFE 843 Query: 796 STPAKGTLIEIIFP 809 S +G+L P Sbjct: 844 SVHNEGSLFWAFLP 857 >gi|261211606|ref|ZP_05925893.1| signal transduction histidine kinase [Vibrio sp. RC341] gi|260838956|gb|EEX65588.1| signal transduction histidine kinase [Vibrio sp. RC341] Length = 569 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/243 (33%), Positives = 129/243 (53%), Gaps = 8/243 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K AE+ + KS+FLA +SHE+RTPL A++G +V++ E Sbjct: 195 ELRLAQKFAEQANQSKSNFLAMMSHELRTPLNAVLGLIDVLRGD-----STSYQAELLEQ 249 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT- 688 ++ S L+L I+ND+LD+S+IESG +LH V L + + +++ + A EK I Sbjct: 250 MENSAELLLIIINDVLDLSRIESGHFSLHCHWVDLKKKLDQSLVYHRQIAQEKGIAFNVQ 309 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + N D + QI NI+ NAI FT SG Q+ I + +++ V RV+DTG+G+ Sbjct: 310 THINERLEYYTDSARLTQILFNIVGNAIKFTKSG-QVDIDLIYGTHQ-VTFRVKDTGIGI 367 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +++ PF Q NS GTGLGL + K +++ G + S GT + Sbjct: 368 EKNRIDRLFTPFIQADNSITRNYGGTGLGLAITKHLIELMGGSIQVESELEVGTTFILQV 427 Query: 809 PLY 811 P++ Sbjct: 428 PIH 430 >gi|298530356|ref|ZP_07017758.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509730|gb|EFI33634.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 784 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 131/247 (53%), Gaps = 15/247 (6%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L+ A+ A++ S KS FLA +SHEIRTP+ AI+GF++V++ P PR + Sbjct: 295 ELARARNRAQEASKAKSTFLANMSHEIRTPMNAILGFAQVLEQD---PDLTPRQAGHLKT 351 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RSGN +L ++ND+LD+SKIE+G++ E L + + + + A K + Sbjct: 352 ITRSGNHLLRLINDILDMSKIEAGQVQSSPEDFGLVDMLEDMGLMFSSRAEAKGLQFILE 411 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---------EVIL 739 ++P I AD ++QI +N+L NA+ FT SGG T + + + + Sbjct: 412 RDRHLPGNIRADQGMLRQIMVNLLGNAVKFTSSGGVACRVRTEPAQDTGEKDDSRLRLTI 471 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V D+G G+ + +K +PF Q + I+ GTGLGL ++++ G + ST Sbjct: 472 EVEDSGPGIQEIDQQKLFEPFQQA--EEGIKEGGTGLGLAISRSFARLMGGDIEVSSTKD 529 Query: 800 KGTLIEI 806 +G+L + Sbjct: 530 RGSLFRV 536 >gi|126455824|ref|YP_001074202.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1106a] gi|242312265|ref|ZP_04811282.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1106b] gi|126229592|gb|ABN93005.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1106a] gi|242135504|gb|EES21907.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1106b] Length = 1032 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/264 (32%), Positives = 132/264 (50%), Gaps = 10/264 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DIS K+ + KL A+ A++ + KS FLA +SHEIRTPL AIIG E+++ Sbjct: 523 TLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRS--- 579 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + E + ++ N +L I+ND+LD+SK+ESG+M L P + + E + Sbjct: 580 PLSEQQS-ERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYA 638 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII----STTH 731 A K + + +S + R D ++Q+ N++ NAI FT G I I + Sbjct: 639 PLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAA 697 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + V DTG+G+ + + Q S R G+GLGLPL + +V G Sbjct: 698 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 757 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSH 815 I S P GT + + PL + H Sbjct: 758 IEIDSLPDFGTTVTVALPLREARH 781 >gi|26107413|gb|AAN79596.1|AE016758_200 Sensor protein torS [Escherichia coli CFT073] Length = 576 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 133/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 98 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 153 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 154 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 210 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 211 TEIADDVPTALMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRTDGEQWLVEVEDSGC 268 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 269 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 324 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 325 RLPLRIATAP 334 >gi|281206288|gb|EFA80477.1| histidine kinase [Polysphondylium pallidum PN500] Length = 878 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/285 (28%), Positives = 144/285 (50%), Gaps = 15/285 (5%) Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEI 596 ++ + +++ + F+ CY + + + KN +L+ AK A + + +FLA +SHEI Sbjct: 422 IIDVTLVLITMSFTLCYQYFIDEAHRETKTKNLQLTVAKDAAVEAYQARQEFLATMSHEI 481 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL +IG + ++++ P P + A + G+++L +VND+LD+SK+E+ +M Sbjct: 482 RTPLNGLIGMATLLRDSLSLP---PEEKQMAKSVKSCGDILLRLVNDILDLSKLEANQMV 538 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNA 715 + + + E ++ A E + ++ A+N+P +L D + Q+ +N+ NA Sbjct: 539 VENIGFRVKDMAHEICQVLAAQAKEHNLRLQYEVADNVPPVLFGDTGRILQVLMNLTGNA 598 Query: 716 IHFTPSGGQIII---------STTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 I FTP G II T S+E V RV+DTG+G+ +K + F Q Sbjct: 599 IKFTPEGVVKIIIDLIEDDAEKITFKSDEYNVCFRVQDTGIGVPPESHQKIFEAFVQADP 658 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 S + G+GLGL L +V G+ +++ G+ I PL Sbjct: 659 SDSRKYGGSGLGLYLCAKLVKLMRGEIGVYNNQHGGSTFWFILPL 703 >gi|227518448|ref|ZP_03948497.1| histidine kinase [Enterococcus faecalis TX0104] gi|229546128|ref|ZP_04434853.1| histidine kinase [Enterococcus faecalis TX1322] gi|229550317|ref|ZP_04439042.1| histidine kinase [Enterococcus faecalis ATCC 29200] gi|255973089|ref|ZP_05423675.1| sensory box histidine kinase VicK [Enterococcus faecalis T1] gi|255976128|ref|ZP_05426714.1| sensory box histidine kinase VicK [Enterococcus faecalis T2] gi|256618777|ref|ZP_05475623.1| hypothetical protein EFDG_00205 [Enterococcus faecalis ATCC 4200] gi|256762197|ref|ZP_05502777.1| sensory box histidine kinase VicK [Enterococcus faecalis T3] gi|256852842|ref|ZP_05558212.1| VicK protein [Enterococcus faecalis T8] gi|256958686|ref|ZP_05562857.1| PAS [Enterococcus faecalis DS5] gi|256962216|ref|ZP_05566387.1| PAS [Enterococcus faecalis Merz96] gi|256965406|ref|ZP_05569577.1| PAS [Enterococcus faecalis HIP11704] gi|257077960|ref|ZP_05572321.1| PAS [Enterococcus faecalis JH1] gi|257082849|ref|ZP_05577210.1| sensory box histidine kinase VicK [Enterococcus faecalis E1Sol] gi|257085547|ref|ZP_05579908.1| sensory box histidine kinase [Enterococcus faecalis Fly1] gi|257086547|ref|ZP_05580908.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus faecalis D6] gi|257089604|ref|ZP_05583965.1| two component system sensor histidine kinase vicK [Enterococcus faecalis CH188] gi|257415811|ref|ZP_05592805.1| PAS [Enterococcus faecalis AR01/DG] gi|257422895|ref|ZP_05599885.1| two component system sensor histidine kinase vicK [Enterococcus faecalis X98] gi|293383243|ref|ZP_06629159.1| sensory box histidine kinase VicK [Enterococcus faecalis R712] gi|293387602|ref|ZP_06632148.1| sensory box histidine kinase VicK [Enterococcus faecalis S613] gi|294781109|ref|ZP_06746459.1| PAS domain S-box [Enterococcus faecalis PC1.1] gi|300860119|ref|ZP_07106207.1| PAS domain S-box protein [Enterococcus faecalis TUSoD Ef11] gi|307273519|ref|ZP_07554762.1| PAS domain S-box [Enterococcus faecalis TX0855] gi|307274482|ref|ZP_07555665.1| PAS domain S-box [Enterococcus faecalis TX2134] gi|307279012|ref|ZP_07560070.1| PAS domain S-box [Enterococcus faecalis TX0860] gi|307288505|ref|ZP_07568491.1| PAS domain S-box [Enterococcus faecalis TX0109] gi|307291177|ref|ZP_07571062.1| PAS domain S-box [Enterococcus faecalis TX0411] gi|312903944|ref|ZP_07763113.1| PAS domain S-box [Enterococcus faecalis TX0635] gi|312907169|ref|ZP_07766160.1| PAS domain S-box [Enterococcus faecalis DAPTO 512] gi|312909788|ref|ZP_07768636.1| PAS domain S-box [Enterococcus faecalis DAPTO 516] gi|312951045|ref|ZP_07769953.1| PAS domain S-box [Enterococcus faecalis TX0102] gi|227074126|gb|EEI12089.1| histidine kinase [Enterococcus faecalis TX0104] gi|229304580|gb|EEN70576.1| histidine kinase [Enterococcus faecalis ATCC 29200] gi|229308652|gb|EEN74639.1| histidine kinase [Enterococcus faecalis TX1322] gi|255964107|gb|EET96583.1| sensory box histidine kinase VicK [Enterococcus faecalis T1] gi|255969000|gb|EET99622.1| sensory box histidine kinase VicK [Enterococcus faecalis T2] gi|256598304|gb|EEU17480.1| hypothetical protein EFDG_00205 [Enterococcus faecalis ATCC 4200] gi|256683448|gb|EEU23143.1| sensory box histidine kinase VicK [Enterococcus faecalis T3] gi|256711301|gb|EEU26339.1| VicK protein [Enterococcus faecalis T8] gi|256949182|gb|EEU65814.1| PAS [Enterococcus faecalis DS5] gi|256952712|gb|EEU69344.1| PAS [Enterococcus faecalis Merz96] gi|256955902|gb|EEU72534.1| PAS [Enterococcus faecalis HIP11704] gi|256985990|gb|EEU73292.1| PAS [Enterococcus faecalis JH1] gi|256990879|gb|EEU78181.1| sensory box histidine kinase VicK [Enterococcus faecalis E1Sol] gi|256993577|gb|EEU80879.1| sensory box histidine kinase [Enterococcus faecalis Fly1] gi|256994577|gb|EEU81879.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus faecalis D6] gi|256998416|gb|EEU84936.1| two component system sensor histidine kinase vicK [Enterococcus faecalis CH188] gi|257157639|gb|EEU87599.1| PAS [Enterococcus faecalis ARO1/DG] gi|257164719|gb|EEU94679.1| two component system sensor histidine kinase vicK [Enterococcus faecalis X98] gi|291079421|gb|EFE16785.1| sensory box histidine kinase VicK [Enterococcus faecalis R712] gi|291082934|gb|EFE19897.1| sensory box histidine kinase VicK [Enterococcus faecalis S613] gi|294451787|gb|EFG20239.1| PAS domain S-box [Enterococcus faecalis PC1.1] gi|300850937|gb|EFK78686.1| PAS domain S-box protein [Enterococcus faecalis TUSoD Ef11] gi|306497831|gb|EFM67363.1| PAS domain S-box [Enterococcus faecalis TX0411] gi|306500580|gb|EFM69911.1| PAS domain S-box [Enterococcus faecalis TX0109] gi|306504137|gb|EFM73349.1| PAS domain S-box [Enterococcus faecalis TX0860] gi|306508876|gb|EFM77963.1| PAS domain S-box [Enterococcus faecalis TX2134] gi|306509796|gb|EFM78823.1| PAS domain S-box [Enterococcus faecalis TX0855] gi|310626197|gb|EFQ09480.1| PAS domain S-box [Enterococcus faecalis DAPTO 512] gi|310631000|gb|EFQ14283.1| PAS domain S-box [Enterococcus faecalis TX0102] gi|310632664|gb|EFQ15947.1| PAS domain S-box [Enterococcus faecalis TX0635] gi|311289746|gb|EFQ68302.1| PAS domain S-box [Enterococcus faecalis DAPTO 516] gi|315027747|gb|EFT39679.1| PAS domain S-box [Enterococcus faecalis TX2137] gi|315031522|gb|EFT43454.1| PAS domain S-box [Enterococcus faecalis TX0017] gi|315035062|gb|EFT46994.1| PAS domain S-box [Enterococcus faecalis TX0027] gi|315147676|gb|EFT91692.1| PAS domain S-box [Enterococcus faecalis TX4244] gi|315151378|gb|EFT95394.1| PAS domain S-box [Enterococcus faecalis TX0012] gi|315154082|gb|EFT98098.1| PAS domain S-box [Enterococcus faecalis TX0031] gi|315157369|gb|EFU01386.1| PAS domain S-box [Enterococcus faecalis TX0043] gi|315158432|gb|EFU02449.1| PAS domain S-box [Enterococcus faecalis TX0312] gi|315165411|gb|EFU09428.1| PAS domain S-box [Enterococcus faecalis TX1302] gi|315166595|gb|EFU10612.1| PAS domain S-box [Enterococcus faecalis TX1341] gi|315169876|gb|EFU13893.1| PAS domain S-box [Enterococcus faecalis TX1342] gi|315172773|gb|EFU16790.1| PAS domain S-box [Enterococcus faecalis TX1346] gi|315578293|gb|EFU90484.1| PAS domain S-box [Enterococcus faecalis TX0630] gi|323480427|gb|ADX79866.1| histidine sensor kinase [Enterococcus faecalis 62] gi|327534819|gb|AEA93653.1| sensor histidine kinase [Enterococcus faecalis OG1RF] Length = 609 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 97/370 (26%), Positives = 176/370 (47%), Gaps = 31/370 (8%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 ME E +L S+L +DG+ +R G +++ N L E+++ L+ Sbjct: 254 MEAERNRLDSVLTHMTDGVIATDRRGKVITINEMALSLLNVKNENVIGTSLLELLDIEED 313 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYSLTMHDIS 562 + L E L + ++ S +EE + +R+ I ++ F + +HD++ Sbjct: 314 YTLRKLLEEPDELLIDRST------SDREEDQMIIRVDFTMIRRESGFITGLVCVLHDVT 367 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E QEKN E+E + +F++ VSHE+RTPLT++ + E + G NP Sbjct: 368 E--QEKN---------ERE---RREFVSNVSHELRTPLTSMRSYIEALSE---GAWENPE 410 Query: 623 YI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN- 680 + + ++ ++NDLL++S+++SG +L E V+ +E ++ + + Sbjct: 411 IAPNFLKVTLEETDRMIRMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIEN 470 Query: 681 -EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 +K IR F + D V Q+ NIL+NAI ++P GG I T N V+ Sbjct: 471 EQKNYKIRREFTKRDLWVELDTDKVIQVLDNILNNAIKYSPDGGVITCRLVETHNN-VVF 529 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 + D G+G+ +L K + F ++ ++ GTGLGL ++K ++ A+ G ++ ST Sbjct: 530 SISDQGLGIPKKDLGKVFERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEG 589 Query: 800 KGTLIEIIFP 809 +G+ I P Sbjct: 590 EGSTFYISLP 599 >gi|163801626|ref|ZP_02195524.1| anaerobic C4-dicarboxylate transport [Vibrio sp. AND4] gi|159174543|gb|EDP59345.1| anaerobic C4-dicarboxylate transport [Vibrio sp. AND4] Length = 986 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/254 (31%), Positives = 133/254 (52%), Gaps = 10/254 (3%) Query: 571 LSHAK--KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 L+HAK + AE+ S KS FLA +SHEIRTP+ ++G + ++ + P+ YA Sbjct: 454 LNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLIDSGLNPIQK----RYAE 509 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RSG +L I+ND+LD SKIE+G + + L + V + L+ A EK++L Sbjct: 510 IINRSGKTLLAILNDVLDYSKIEAGHLEIRCLGFDLHQMVEDTFQLMNGKAQEKKLLFSY 569 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGV 746 +++ R D+ + Q+ N++ NAI FT G I +S +V+ V DTG+ Sbjct: 570 HIESDVGRYWKGDVTRINQVLSNLVGNAIKFTEEGEVDIYVSLNPEDESQVLFEVTDTGI 629 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ + + F Q + G GTGLGL +++ +V A G+ + S +G+ + Sbjct: 630 GIAKKDQKTLFDAFTQAESGMHQTG-GTGLGLAISRRIVQAMGGELNVDSDEGQGSRLWF 688 Query: 807 IFPLYDTSHPHDCI 820 PL + S P + + Sbjct: 689 SIPL-EESEPVETV 701 >gi|28871222|ref|NP_793841.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28854472|gb|AAO57536.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] Length = 1161 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/267 (28%), Positives = 142/267 (53%), Gaps = 8/267 (2%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 SL + +I ++ L AK+ +E ++ KS ++ +SHE+RTPL +I+GF+++++ Sbjct: 690 SLLIQEIDAHEKTDQALQKAKEASEAANAAKSRYITGLSHELRTPLNSILGFTQILQRDT 749 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P P + + I RS + +L ++N LLD++KIE+GK+ L + E + + + Sbjct: 750 TTP---PHHQDPLATIMRSSSHLLSLINGLLDVAKIEAGKLKLEPTEILFQEFLHDLEKM 806 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 A EK + R +P ++ D + V+QI +N+L NA++FT S G++++ ++ Sbjct: 807 FAGTAQEKNLGFRLELEGRMPMVVRGDEKRVRQILINLLGNAVNFTDS-GEVVLRVSY-R 864 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E I + D+G+G+ ++E+ +PF + Q G GLGL + + + G Sbjct: 865 RETAIFDIVDSGIGIAPEQIERIFQPFER--GGQTRHDNGVGLGLTITRMLTALMGGALS 922 Query: 794 IFSTPAKGTLIEIIFPLYDTSHPHDCI 820 + STP +GT ++ L + P I Sbjct: 923 VSSTPGEGTHFKVRLFLSEVRVPKAVI 949 >gi|163848362|ref|YP_001636406.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222526284|ref|YP_002570755.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163669651|gb|ABY36017.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222450163|gb|ACM54429.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 957 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 102/377 (27%), Positives = 192/377 (50%), Gaps = 27/377 (7%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 ++ E+ +++E T+DGI +IN ++ NR FG D+ +P+ L+ Sbjct: 344 RLRAELDHAQAVVETTNDGIVLINARRRVVMVNRRACYFFGVAEHDLKGRPYDDLLQ--- 400 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 V N L L + E+ + +++L C+S + D E Sbjct: 401 --VFNRVFAHPARLGLWLGQLLGSETDRANEEFQVVWPQVRRL---QCFSAPVVDRRE-- 453 Query: 566 QEKNKLSHAKKIA-EKESSH-KSDFLARVSHEIRTPLTAIIGFSEVI----KNQRFGPLG 619 Q ++ + + E+E K++F++ VSHE+RTPL + G +++ + + G + Sbjct: 454 QYLGRILIFRDVTREREVEQMKNEFVSMVSHELRTPLASTQGALQLLLGDSERGKSGLIR 513 Query: 620 NPRYIEYANYIDRS---GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + +E + + R+ N +L +VND+LDI+KIE G++ L PV+ +E AI + Sbjct: 514 DMSSVER-DLLQRALTNTNRLLRLVNDVLDIAKIERGQLQLQRHPVAPEEICRNAIDDLA 572 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 +A ++++ I N+P + D + Q+ +N+LSNAI F+P+G Q+++S H E+ Sbjct: 573 SFARQQQVTISLDVPPNLPLVDVDRDRIVQVLVNLLSNAIKFSPAGQQVVVSVAH---EQ 629 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQ-IRGEGTGLGLPLAKAMVDANMGKFY 793 ++R VRD G G++ + K + F Q+ S+ +RG G+GLGL +++ +V+ + G+ + Sbjct: 630 GMVRFSVRDWGPGISRADQLKLFQKFQQLDQSKSNVRG-GSGLGLAISRQLVELHGGRIW 688 Query: 794 IFSTPAKGTLIEIIFPL 810 + S G+ PL Sbjct: 689 VDSDVGFGSTFSFTVPL 705 >gi|256424541|ref|YP_003125194.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] gi|256039449|gb|ACU62993.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] Length = 1203 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/261 (32%), Positives = 144/261 (55%), Gaps = 8/261 (3%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 S + D ++ E+N L KK E E S +KS+FLA +SHE+RTPL +I+ S ++ Sbjct: 499 SRLLEDRNQVIVERN-LEIQKKAEELEISTKYKSEFLANMSHELRTPLNSILLLSRLMAE 557 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 L + + IE A I SG +L++++++LD+SKIE+GKM+L + PV + E ++ Sbjct: 558 NNEKNLSDDQ-IESAQVIQSSGKGLLNLIDEILDLSKIEAGKMDLEYAPVPVHEICNDME 616 Query: 673 SLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 +L A EK + + ++ P ++ D ++QI N+LSNA+ FT G + + T Sbjct: 617 ALFGPIAREKNLALNVQVMSDAPALIETDKMRLEQILKNLLSNALKFTAKGA-VTLQVTA 675 Query: 732 TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + + I+R VRDTG+G+ + + + F Q S + + GTGLGL +++ + Sbjct: 676 VAQDPSIVRFAVRDTGIGIPVEKQQVIFEAFKQADGSTRRKYGGTGLGLSISRELAKLLG 735 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G+ + S P G+ + PL Sbjct: 736 GEIRLESEPGHGSEFVVTIPL 756 >gi|218438439|ref|YP_002376768.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218171167|gb|ACK69900.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 585 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/257 (33%), Positives = 141/257 (54%), Gaps = 10/257 (3%) Query: 566 QEKNKL---SHAKKI-AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E+N+L H+ ++ AE+ + K +FL +SHE+RTPLTAI+G+S+++K G + Sbjct: 192 EERNQLLKNEHSARLEAEQLNQIKDEFLMMLSHELRTPLTAILGWSQLLKK---GLITQK 248 Query: 622 RYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 ++ A I+R+ L +V+DLLD+S+I + K+ L EP+ L+ + + + L A Sbjct: 249 NKVDKALETIERNAKLESKLVDDLLDVSRILANKLILKKEPIDLEFIIKLTLDSILLTAQ 308 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K I I+T + ++ D + ++Q+ ++LSNAI FT GG I I+ T NE + Sbjct: 309 AKEITIKTLIQSPNLKVWGDKQRLQQVFWHLLSNAIKFTGEGGVITITLTQ-DNERAKII 367 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PA 799 + DTG G+ L K F Q +S Q G G+GL +A +V+ + G+ S Sbjct: 368 IHDTGQGIKPELLPFVFKRFWQADSSSQRIAGGLGIGLSIAHRLVELHNGQIQAESLGEE 427 Query: 800 KGTLIEIIFPLYDTSHP 816 KG +I PL + +P Sbjct: 428 KGATFTVILPLQHSENP 444 >gi|167571892|ref|ZP_02364766.1| two-component system sensor protein [Burkholderia oklahomensis C6786] Length = 925 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 89/262 (33%), Positives = 134/262 (51%), Gaps = 10/262 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DIS K+ + KL A+ A++ + KS FLA +SHEIRTPL AIIG E++ R Sbjct: 416 TLLDISLRKESELKLEEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELL---RRS 472 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + R E ++ N +L I+ND+LD+SK+ESG+M L P + + + + Sbjct: 473 PL-SMRQSERLQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQDIVDAYA 531 Query: 677 LYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIII----STTH 731 A K + + +S I + D + QI N++ NAI FT S G I I + T Sbjct: 532 PLAESKGLELFSSVGEGIANYYSGDPARIHQILSNLIGNAIKFTDS-GHISIDVHRAKTG 590 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 N + + V DTG+G+ + + Q S R G+GLGLPL + + G Sbjct: 591 PGNSAIEIWVSDTGIGIQPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLATIMGGS 650 Query: 792 FYIFSTPAKGTLIEIIFPLYDT 813 I S P GT + ++ PL++ Sbjct: 651 IEIDSLPEFGTTVTVVLPLHEA 672 >gi|146276073|ref|YP_001166232.1| histidine kinase [Rhodobacter sphaeroides ATCC 17025] gi|145554314|gb|ABP68927.1| histidine kinase [Rhodobacter sphaeroides ATCC 17025] Length = 868 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 109/370 (29%), Positives = 183/370 (49%), Gaps = 30/370 (8%) Query: 450 EVMQLCSILEATSDGIAIINR-EGIILSTNR--------AVSKLFGYPVEDILRKPFTVF 500 E M+L + ++A DG + +R E ++L +R A + G E+ILR Sbjct: 214 EQMRLRAAIDAIPDGFVLFDRAERLVLCNDRHREIYPRSAPAMQPGARFEEILRHGLANG 273 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL---LSLRIIIKKLPFSSCYSLT 557 + +LT+ L+ RQ LG E++L +R+I + P L Sbjct: 274 QFPDAAGREEEWLTDRLAA-FRQ------LGGAAEQQLDDGRWMRVIEHETPDGGRVGLG 326 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DI++ K ++ L A+ AE S KS FLA +SHEIRTP+ I+G ++++ P Sbjct: 327 V-DITQLKLQQAALETARAAAEAASRAKSAFLANMSHEIRTPMNGIVGMADLLCET---P 382 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 L + + +A I SG +L I+ND+LD SKIE+ ++ L+ EP L+ + E L+Q Sbjct: 383 LTEDQRL-FAETIRSSGEALLVIINDILDYSKIEANRLTLYPEPFDLERTIHEVAMLLQP 441 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE- 735 A K + + F +P R + D ++Q+ N++ NA+ FT + G ++I E Sbjct: 442 QARAKGLDLLIDFDMFLPTRFVGDPCRLRQVLTNLIGNAVKFTEA-GHVLIRVVGLEVEP 500 Query: 736 ---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++ + V DTG+G+ L+ F QI R EGTGLGL + + +++ G Sbjct: 501 GRHDLHVTVEDTGIGIAPGNLDHVFGEFNQIDAEATRRFEGTGLGLAITRRLIEMMQGTV 560 Query: 793 YIFSTPAKGT 802 ++ S +G+ Sbjct: 561 WVESELGRGS 570 >gi|254784391|ref|YP_003071819.1| PAS domain containing histidine kinase [Teredinibacter turnerae T7901] gi|237686889|gb|ACR14153.1| PAS domain containing histidine kinase [Teredinibacter turnerae T7901] Length = 1096 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 87/253 (34%), Positives = 140/253 (55%), Gaps = 7/253 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DISE K+ + +L AK+ AE + KS FLA +SHEIRTPL AIIG+++++ + Sbjct: 599 DISEQKRIEQELEKAKEDAEFANRSKSMFLANMSHEIRTPLNAIIGYAQLLTHDTELRGE 658 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 IE +I +GN +L ++ND+LD+SK+ESGK L L ++ + +++ A Sbjct: 659 THNQIE---HIYSAGNHLLGLINDILDLSKMESGKSRLTMTTFDLSVELNTLLGMMEHRA 715 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K + + P ++ +D + + QI +N+L NAI FT S G++ + H ++ + Sbjct: 716 VTKGLRLNADLDLPSPALVTSDRQKLAQILINLLGNAIKFT-SEGEVSLQCRHQAD-RIR 773 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 L V DTG G++ E + PF Q +++ G GTGLGL L K G+ + ST Sbjct: 774 LVVSDTGEGISAEEQKYLFTPFVQGVQGERV-GSGTGLGLILVKNFTALLGGELTLESTA 832 Query: 799 AKGTLIEIIFPLY 811 +GT + + PL+ Sbjct: 833 GRGTRVIVSLPLH 845 >gi|229076090|ref|ZP_04209058.1| hypothetical protein bcere0024_42870 [Bacillus cereus Rock4-18] gi|228706953|gb|EEL59158.1| hypothetical protein bcere0024_42870 [Bacillus cereus Rock4-18] Length = 571 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 101/376 (26%), Positives = 184/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ +L++ Sbjct: 224 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEE--------YLDRLYYE 275 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 +H TEI+ L +E+I + K K + L + I++ F Sbjct: 276 SFHH--TEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 328 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K +L +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 329 VLVFHDITELK----RLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 372 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ E V + + + Sbjct: 373 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMETVDMKGLLEDIHM 431 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + + ++ D +KQI +N+++NAI +TP+GG + + Sbjct: 432 VLDNKAGEKEISLQVNVLKRVS-VIGDPGRLKQIFINLINNAIVYTPAGGVVSVELAEDK 490 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 491 YNAYI-KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 549 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 550 VDSEVGEGTTFTVVLP 565 >gi|186683187|ref|YP_001866383.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465639|gb|ACC81440.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1416 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/265 (30%), Positives = 141/265 (53%), Gaps = 12/265 (4%) Query: 554 YSLTMHDISEWK---QEKNKLSHAKKIAEKESSH----KSDFLARVSHEIRTPLTAIIGF 606 Y ++ DI+E K E+++L +++A E+ K +FLA +SHE+R+PL I+G+ Sbjct: 1005 YIGSVIDITERKTAEAERDRLLELEQVARTEAETANRIKDEFLAVLSHELRSPLNPILGW 1064 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 + +++ + F P + I I+R+ L ++ DLLD+S+I GK+NL PV+L Sbjct: 1065 ARLLQTREFQPAEIKKAI---ATIERNAKLQAQLIEDLLDVSRILQGKLNLKMFPVNLVL 1121 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 + + V+L A K I I+T ++ ++L D ++Q+ N+LSNA+ FTP G+I Sbjct: 1122 VIEAGLETVRLAAEAKDIQIQTMLDASLGQVLGDSDRLQQVIWNLLSNAVKFTPEEGKIN 1181 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 I ++ I V DTG G++ L + F Q + R G GLGL + + +++ Sbjct: 1182 IQLERIDSQAQIT-VSDTGKGISPEFLPHVFEYFRQADGTTTRRFGGLGLGLAIVRHLIE 1240 Query: 787 ANMGKFYIFS-TPAKGTLIEIIFPL 810 + G + S +G + + PL Sbjct: 1241 LHGGTIWAESLGEGQGAIFRVRLPL 1265 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 122/246 (49%), Gaps = 9/246 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG-FSEVIKNQRFGPLGNPRYIEYANYID 631 A+ +AE + + K+ F + VSHE RTPLT ++G E + N L E + Sbjct: 341 RAEALAELDRA-KTVFFSNVSHEFRTPLTLMLGPLEETLAN--CATLLPAHEREQLEMVQ 397 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 R+G +L +VN LLD S+IE+G++ +EP +L +E S+ + + + + Sbjct: 398 RNGLRLLKLVNSLLDFSRIEAGRVQASYEPTNLATFTAELASVFRSAVERAGMELSVNCP 457 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 + + D ++I LN+LSNA FT +G I + +N+ + V+DTG+G+ Sbjct: 458 SLPAPVYVDREMWEKIVLNLLSNAFKFTMTGK--IAVSLQWANDHIEFAVKDTGIGIPAE 515 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 E+ K F ++ +Q EG+G+GL L + +V + G + S G+ I P Sbjct: 516 EIPHLFKRFHRVKGAQGRTFEGSGIGLSLVQELVQMHGGTVKVTSVLGAGSCFTISIP-- 573 Query: 812 DTSHPH 817 T + H Sbjct: 574 -TGYAH 578 >gi|84687780|ref|ZP_01015651.1| sensor histidine kinase/response regulator [Maritimibacter alkaliphilus HTCC2654] gi|84664216|gb|EAQ10709.1| sensor histidine kinase/response regulator [Rhodobacterales bacterium HTCC2654] Length = 600 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 101/379 (26%), Positives = 183/379 (48%), Gaps = 29/379 (7%) Query: 442 INKRKMEIEVM--QLCSILEATSDGIAIINREGIILSTNRAVSKLF--------GYPVED 491 + ++ +E+++ +L S +E DG A+ + E ++ N A F G E+ Sbjct: 60 LERKTVEVDIAKRRLWSSIETVEDGFAVFDAESRLVIANPAYYAPFDGLECIRPGAHYEE 119 Query: 492 ILRKPFT---VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 I+ + V + + T ++ E + D + +I L + LR++ ++ Sbjct: 120 IVEAALSEGIVDIGERTVPEWRDWMLERWATDAPEP-RQIRLWNGA-----YLRLVDRRA 173 Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 P S+ M D+++ + ++ L A+ AE S KS FLA +SHEIRTP+ ++G ++ Sbjct: 174 PGGDTVSMAM-DVTQAIRRQDALRAARARAEAASRAKSAFLANMSHEIRTPMNGVVGMAD 232 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++ + Y + I SG +L I+ND+LD SKIE+ K+ LH EP L++ + Sbjct: 233 LMAEHDL----DEEMASYVDTIRSSGRALLTIINDVLDYSKIEAAKLELHLEPFDLEQTI 288 Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII- 726 + I+LV EK + I +P R D V+QI N++ NA+ FT G ++ Sbjct: 289 LDVIALVMPSIREKGLKIMLDVDMFLPTRYEGDPVRVRQILTNLIGNAVKFTAKGHILVR 348 Query: 727 ---ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + + + V + V DTG+G+ + F Q+ + + EGTGLGL + + Sbjct: 349 VIGMPDGGDARQRVHVTVEDTGIGIPRDMQDHVFGEFNQVEDERNRSFEGTGLGLAITRQ 408 Query: 784 MVDANMGKFYIFSTPAKGT 802 +V +G+ ++ S G+ Sbjct: 409 LVSLMLGEVWVESEEGIGS 427 >gi|323691898|ref|ZP_08106151.1| sensor protein [Clostridium symbiosum WAL-14673] gi|323504050|gb|EGB19859.1| sensor protein [Clostridium symbiosum WAL-14673] Length = 1053 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/246 (32%), Positives = 126/246 (51%), Gaps = 14/246 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + K +L A K++ + S KSDFL+ +SH+IRTP+ AI+G + + K P+ R + Sbjct: 652 RAAKTELERALKLSREASLAKSDFLSAMSHDIRTPMNAIMGMTTLAKANSGDPV---RVL 708 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I + +L+++ND+LD++KIE ++ L+ E + L + + + ++ A E+ Sbjct: 709 DCLQKISAASGHLLNLINDVLDMNKIERAQITLNREKIYLPDLIKQIGEIIAPQA-EQAG 767 Query: 685 LIRTSFANNI--PRILADLRSVKQIALNILSNAIHFTPSGGQI------IISTTHTSNEE 736 L I P D + QI +NIL NA+ FTP GG + I + Sbjct: 768 LCCEILPGGIRNPCFYGDTLRISQILINILGNAVKFTPRGGSVRFLAEEIPGAAGSGQAC 827 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 VRDTG+GM L+ +PF + + R EGTGLGL + K +VD G + S Sbjct: 828 YRFTVRDTGIGMAKETLDHLFEPF--VRSRAVSRVEGTGLGLSIVKGLVDLMGGSVSVQS 885 Query: 797 TPAKGT 802 P KGT Sbjct: 886 EPEKGT 891 >gi|283781401|ref|YP_003372156.1| histidine kinase [Pirellula staleyi DSM 6068] gi|283439854|gb|ADB18296.1| histidine kinase [Pirellula staleyi DSM 6068] Length = 501 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 110/455 (24%), Positives = 220/455 (48%), Gaps = 67/455 (14%) Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 ST P+LS +N PV ++ C+A AR Q E Sbjct: 95 STTAALPRLSSDNPWAPV--FQRVHNCLADYAR-----------------------QLDE 129 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 + I +V R R+ E QL IL SD + I++ G I +N++ +L Sbjct: 130 ARHLSSIA--EVRARHASRQFE----QLTEILNGLSDPVVAIDQFGEITLSNQSAQRLLK 183 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 PVE +T + + LDL + L + LG T++ ++ ++R Sbjct: 184 LPVE------------ADTHAALEQ-------LDLCEELVSL-LGETRKRRVPAVRQAET 223 Query: 547 KLPFS---------SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK--SDFLARVSHE 595 +L +C +L + S ++ ++ I+ +++ K ++F++ VSHE Sbjct: 224 ELSDDQGRKHWFRITCKALAGDEQSSGNEQHGAVAVLTDISGQKAIQKRNAEFVSAVSHE 283 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 ++TPL++I + E++ + + E+ I+ + + ++++LL++++IE+G + Sbjct: 284 MKTPLSSIRAYVELLADDEAE--DDATREEFLKVIESQTDRLQRLIDNLLNLARIEAGVV 341 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 + P SL+E + EA++L+Q A +K I + + + +LAD ++ Q A+N++SNA Sbjct: 342 AVQKLPQSLNELLGEAVNLLQPAAQQKNITLSSELSPMYLGVLADRDTLLQAAINLISNA 401 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 + +T GG + + + ++ +V+ V D+GVG++ + ++ + F ++ +++ GTG Sbjct: 402 LKYTQPGGSVQVRSRLAAS-DVVFEVTDSGVGLSEDDCKRVFEKFYRVKKDREM-ASGTG 459 Query: 776 LGLPLAKAMV-DANMGKFYIFSTPAKGTLIEIIFP 809 LGLPL K +V D + G+ + S +G+ ++ P Sbjct: 460 LGLPLVKHIVEDIHNGRVEVESKLGEGSTFRLVLP 494 >gi|254480157|ref|ZP_05093405.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [marine gamma proteobacterium HTCC2148] gi|214039719|gb|EEB80378.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [marine gamma proteobacterium HTCC2148] Length = 509 Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 118/228 (51%), Gaps = 9/228 (3%) Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGP--LGNPRYIEYANYIDRSGNLVLDIVNDLL 645 FLA VSHE+RTPL AIIG+SE++ ++ + P++ + + I RSG +L ++ND+L Sbjct: 275 FLANVSHELRTPLNAIIGYSEMLHDELSDEREVDRPQFQQDLDKIIRSGRQLLTLINDIL 334 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705 D+SKIE+GKM LH E E + +A + E+ + ++P + D + Sbjct: 335 DLSKIETGKMALHCETFQPGELLEQACDSITPQLRERNNQLEKPDFESLPTLYNDAAKFR 394 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFG 761 QI N+LSNA FT +G I+ T EE V + VRDTG+GM + + + F Sbjct: 395 QIFTNLLSNACKFTNAG---YITVLATEPEEHPGWVEIAVRDTGIGMNEDQQSQVFEAFV 451 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q S GTGLGL + + G + S P G+ ++ P Sbjct: 452 QADASTSANYGGTGLGLAICRDYCQLMGGTIRVESQPGNGSTFTVLLP 499 >gi|153868974|ref|ZP_01998688.1| two-component system sensory histidine kinase [Beggiatoa sp. PS] gi|152074468|gb|EDN71320.1| two-component system sensory histidine kinase [Beggiatoa sp. PS] Length = 324 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 133/256 (51%), Gaps = 4/256 (1%) Query: 568 KNKLSHAKKI-AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 KN+ S ++ AE+ + KS F+A ++HE+RTPL AIIG+SE+++ + G + Sbjct: 66 KNEESQKARVQAEEANKAKSIFVANMTHELRTPLNAIIGYSEMLQEEA-EDTGQKDLVPD 124 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I +G +L ++ND+LD SK+E+GKM L+ E ++ + + I ++ + + Sbjct: 125 LEKIASAGKHLLALINDVLDFSKVEAGKMGLYLEEFEINTMLQDVIGTIKQVIEKNNNHL 184 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--VILRVRDT 744 ++ N+ + +D+ V+Q N+LSNA FT +G + + ++ E + L+V DT Sbjct: 185 IVNYPKNLGIMQSDVTKVRQCLFNLLSNANKFTETGTITLQANRYSQKGEDWISLKVSDT 244 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+GMT ++EK F Q S + GTGLGL + K G+ + S KG+ Sbjct: 245 GIGMTADQIEKVFLAFTQADASTTRKYGGTGLGLVITKQFCQMMGGEVNVESQFGKGSTF 304 Query: 805 EIIFPLYDTSHPHDCI 820 I P D I Sbjct: 305 SINLPAIVKKTKEDTI 320 >gi|126444558|ref|YP_001061186.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 668] gi|126224049|gb|ABN87554.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 668] Length = 1014 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/264 (32%), Positives = 132/264 (50%), Gaps = 10/264 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DIS K+ + KL A+ A++ + KS FLA +SHEIRTPL AIIG E+++ Sbjct: 505 TLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRS--- 561 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + E + ++ N +L I+ND+LD+SK+ESG+M L P + + E + Sbjct: 562 PLSEQQS-ERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYA 620 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII----STTH 731 A K + + +S + R D ++Q+ N++ NAI FT G I I + Sbjct: 621 PLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAA 679 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + V DTG+G+ + + Q S R G+GLGLPL + +V G Sbjct: 680 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 739 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSH 815 I S P GT + + PL + H Sbjct: 740 IEIDSLPDFGTTVTVALPLREARH 763 >gi|213969639|ref|ZP_03397775.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] gi|213925735|gb|EEB59294.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] Length = 1161 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/267 (28%), Positives = 142/267 (53%), Gaps = 8/267 (2%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 SL + +I ++ L AK+ +E ++ KS ++ +SHE+RTPL +I+GF+++++ Sbjct: 690 SLLIQEIDAHEKTDQALQKAKEASEAANAAKSRYITGLSHELRTPLNSILGFTQILQRDT 749 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P P + + I RS + +L ++N LLD++KIE+GK+ L + E + + + Sbjct: 750 TTP---PHHQDPLATIMRSSSHLLSLINGLLDVAKIEAGKLKLEPTEILFQEFLHDLEKM 806 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 A EK + R +P ++ D + V+QI +N+L NA++FT S G++++ ++ Sbjct: 807 FAGTAQEKNLGFRLELEGRMPMVVRGDEKRVRQILINLLGNAVNFTDS-GEVVLRVSY-R 864 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E I + D+G+G+ ++E+ +PF + Q G GLGL + + + G Sbjct: 865 RETAIFDIVDSGIGIAPEQIERIFQPFER--GGQTRHDNGVGLGLTITRMLTALMGGALS 922 Query: 794 IFSTPAKGTLIEIIFPLYDTSHPHDCI 820 + STP +GT ++ L + P I Sbjct: 923 VSSTPGEGTHFKVRLFLSEVRVPKAVI 949 >gi|254463944|ref|ZP_05077355.1| sensory box sensor histidine kinase/response regulator [Rhodobacterales bacterium Y4I] gi|206684852|gb|EDZ45334.1| sensory box sensor histidine kinase/response regulator [Rhodobacterales bacterium Y4I] Length = 755 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 116/460 (25%), Positives = 205/460 (44%), Gaps = 72/460 (15%) Query: 392 TCIAASARLHTIQWNRENS-------LAMTFIP-------------FEKANQFPENMPQN 431 T +A A LH+ W R +S LAM + +AN + Q Sbjct: 168 TPLAMLAFLHSQGWERASSPQLHLAGLAMLYAAVGWALYFASRNFDITRANLLAQAQQQE 227 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE- 490 +E + ++ + E +L + E +D +++REG L N A +++ GY + Sbjct: 228 ALEAANASLKVQR----AEARRLALVAENANDITRLLDREGRTLWANDAFTRVTGYTLAE 283 Query: 491 -------DILRKPFTVFLEQNTPSVMNHYLTEILSL--DLRQT---LEKITLGSTKEEKL 538 D++R P T E+L+ + RQ L L +K+ + Sbjct: 284 AKGKLLGDLIRDPDTSL--------------EVLARISEARQAGRPLRVEILNRSKDGRT 329 Query: 539 LSLRIIIKKLP-FSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 L ++P +C Y DI+ K + +L A+ AE+ + K+DFLA + Sbjct: 330 FWLET--NQVPMLDACGRVDSYVAIERDITAAKLHEQELEKARIAAEEGARAKADFLATM 387 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHEIRTP+ +IG ++++++ N YA I S + +L ++ND+LD+SK+++ Sbjct: 388 SHEIRTPMNGVIGMAQLLRDSGL----NEEQELYAGAILSSADTLLALINDVLDVSKMDA 443 Query: 653 GKMNLH---FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIA 708 ++L F+P + E + + L++ A K + + +P R+ D R ++QI Sbjct: 444 EGVSLSCTDFDPRACFE---DTMRLLKAQAEAKGLDLLLDIKACVPARLHGDDRRIRQIL 500 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 LN+ NAI FT G + + + ++ V DTG+G+ L K + F Q + Sbjct: 501 LNLAGNAIKFTERGQVQVTLDAEPAGQGTGLVFSVADTGIGIPREMLSKVFERFSQADAA 560 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 R GTGLGL +++ + +A G + S G+ + Sbjct: 561 ISRRFGGTGLGLAISRRLAEAMGGSISVASDLGIGSCFTV 600 >gi|159898664|ref|YP_001544911.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159891703|gb|ABX04783.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 755 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/218 (33%), Positives = 127/218 (58%), Gaps = 4/218 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHE+RTPL AII F+ + R+G R E + + + +L ++ND+ Sbjct: 257 KSRFLANMSHELRTPLNAIINFTAFLD--RYGEFSE-RQRELQERVLYNADHLLGLINDI 313 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+SKIE+G+M L +E L+ ++ ++ +K + + +P ++ D + Sbjct: 314 LDLSKIEAGRMELMYEKTQLEPIITGVMATASGLTRDKGLELELDMPEELPTMVIDKVRI 373 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +Q+ LN+LSNA+ FT GQI ++ + E V + V+D+G+G+ ++ + F Q+ Sbjct: 374 RQVLLNLLSNAVKFTEQ-GQINVTISQPDPETVQISVQDSGIGIAPEHQQQIFEEFQQVQ 432 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 N + +GTGLGLP++K +V+ + G ++ STP KG+ Sbjct: 433 NEVTHQYQGTGLGLPISKLLVEMHGGNMWLESTPGKGS 470 >gi|83646428|ref|YP_434863.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83634471|gb|ABC30438.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 796 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 128/251 (50%), Gaps = 7/251 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K +L A+ A + KS F+A +SHEIRTPL +IG + + G L + Sbjct: 58 KDRTRQLELARDEAMAANKAKSLFIANMSHEIRTPLNGVIGMLQAMMQ---GDLSREQKA 114 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + SG L+L ++NDLLD SK+E+ K+NL P SL + +V A++K + Sbjct: 115 RAKTALT-SGKLLLTVINDLLDFSKLEADKVNLERIPFSLGRLLDSCFPVVCSQASDKGL 173 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + + A ++P +I+ D +KQI N+LSNA+ FT G + + + ++ V D Sbjct: 174 TLTLTLAAHLPDQIMGDPTRLKQIICNLLSNAVKFTKRGE--VSLYCYPVEDRLVFGVAD 231 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TGVG+ ++ +PF Q +S R GTGLGL ++ +V+A G+ + S P G Sbjct: 232 TGVGIPADRQQQIFEPFSQADDSHTRRYGGTGLGLSISSRLVEAMGGRLKVRSEPGVGAD 291 Query: 804 IEIIFPLYDTS 814 P + S Sbjct: 292 FYFALPYHSLS 302 >gi|37520287|ref|NP_923664.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35211280|dbj|BAC88659.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 856 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 125/225 (55%), Gaps = 10/225 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K++FLA +SHEIRTP+ +IG ++V+ G L + R + I SG +L I+ND+ Sbjct: 484 KNEFLATMSHEIRTPMNGVIGLADVLLAD--GGLTH-RQRDSIETIRASGETLLTIINDI 540 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703 LD SK ESG + L + L ++ + L++ A +K + + + +P+ ++ D Sbjct: 541 LDFSKAESGCIELETKRFDLHALLAGCVDLLRPEATQKHLQLCCTLHGQVPQAVVGDAAR 600 Query: 704 VKQIALNILSNAIHFTPSGG-QIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAM 757 ++QI +N++ NA+ FT SG + ++ + E E+ VRDTG+G+ +++ Sbjct: 601 LRQILVNLIGNAVKFTTSGAVSVNVTAARPAAEPPQKWELHFAVRDTGIGIPAERMDRLF 660 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 KPF Q+ S R GTGLGL + K + + G+ ++ S P +G+ Sbjct: 661 KPFSQVDASTTRRYGGTGLGLAICKRLAELMDGRIWVESEPGRGS 705 >gi|167826595|ref|ZP_02458066.1| two-component system sensor protein [Burkholderia pseudomallei 9] Length = 923 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/264 (32%), Positives = 132/264 (50%), Gaps = 10/264 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DIS K+ + KL A+ A++ + KS FLA +SHEIRTPL AIIG E+++ Sbjct: 414 TLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRS--- 470 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + E + ++ N +L I+ND+LD+SK+ESG+M L P + + E + Sbjct: 471 PLSEQQS-ERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYA 529 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII----STTH 731 A K + + +S + R D ++Q+ N++ NAI FT G I I + Sbjct: 530 PLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAA 588 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + V DTG+G+ + + Q S R G+GLGLPL + +V G Sbjct: 589 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 648 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSH 815 I S P GT + + PL + H Sbjct: 649 IEIDSLPDFGTTVTVALPLREARH 672 >gi|307155247|ref|YP_003890631.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306985475|gb|ADN17356.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 762 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 127/242 (52%), Gaps = 13/242 (5%) Query: 577 IAEKESSH--KSDFLARVSHEIRTPLTAIIGFSEVI-----KNQRFGPLGNPRYIEYANY 629 IA +S+H KS+FL+ +SHE+ TPLT +IG + + + P +YIE Sbjct: 376 IAVAQSAHLSKSEFLSNISHELLTPLTCVIGLAGTLLHWSGEQSSLSPEKQRKYIES--- 432 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I ++G ++D++ND+LD S I SG L+ SL V+ + A +K I + Sbjct: 433 IQKNGKKLMDLINDILDYSSITSGDYQLNIHEFSLYSVVNSVLRDFASEAQKKSIDLILD 492 Query: 690 FANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 F AD +KQI +++SNAI FTP G++ + ++ V +V DTG+G Sbjct: 493 FQVQKEENDFYADRERIKQILSHLISNAIKFTPDQGKVTLRIWREKSQ-VFFQVEDTGIG 551 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 ++ +L + F Q+ ++Q GTGLGL L K +V+ + G + STP +G+L + Sbjct: 552 ISQEQLPLLFEKFQQLEKARQRTHGGTGLGLALTKQLVELHRGTIEVESTPEQGSLFTVR 611 Query: 808 FP 809 P Sbjct: 612 IP 613 >gi|330829872|ref|YP_004392824.1| response regulator receiver [Aeromonas veronii B565] gi|328805008|gb|AEB50207.1| Response regulator receiver [Aeromonas veronii B565] Length = 608 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/261 (30%), Positives = 138/261 (52%), Gaps = 10/261 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q +KL A + AE + KS FLA +SHEIRTP+ I+G ++ ++ +PR Sbjct: 209 QQLNDKLLRANQAAEAGTRAKSSFLANMSHEIRTPMNGILGMLSLLADRDM----DPRER 264 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +Y S N +L ++ND+LD+SK+E GK+ L P L + + + +L+Q + K I Sbjct: 265 DYLETARESANHLLGLLNDILDVSKLEEGKIELQLAPHHLPQLLEDIRALMQSNCDAKGI 324 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VIL 739 + + A + P ++ D V+QI N++SNAI FT G++ I T E+ + + Sbjct: 325 KLTLTVAPDTPEWLMIDPLRVRQILFNLVSNAIKFTHQ-GEVNIRVDSTLLEQDRHSIRI 383 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 ++DTG+GM+ +L+ + F Q S + G+GLGL +++ + G + S+ Sbjct: 384 SIQDTGIGMSKSQLKNLFQRFAQADVSITRQYGGSGLGLEISRNLARLMGGDISVESSEG 443 Query: 800 KGTLIEIIFPLYDTSHPHDCI 820 G+ I+P T+ C+ Sbjct: 444 HGSTFTYIWPARATTPSIVCL 464 >gi|265750403|ref|ZP_06086466.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|263237299|gb|EEZ22749.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1467 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 124/237 (52%), Gaps = 8/237 (3%) Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIG-FSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 I +K S K F +SHE+RTPLT I G E+ + ++ G ++Y + ++++ Sbjct: 932 IEQKLSELKIKFFTNISHELRTPLTLIQGPIQELKEKEKLSQKG----MQYVDLMEKNTK 987 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L +VN +LD KI++GKM LH +L+E V ++ A E + A Sbjct: 988 QMLQLVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDI 1047 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--VILRVRDTGVGMTNYEL 753 + AD V + NI+SNA FTP+GG I + T S+E+ +RV D+GVG+ +L Sbjct: 1048 MVWADKEKVAIVIRNIISNAFKFTPAGGNIYV-TMGVSDEDKHCYVRVEDSGVGIPQSKL 1106 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + F Q N++ +GTG+GL L+K ++ + G+ Y S KG + I L Sbjct: 1107 SEIFERFSQADNARGAYYQGTGIGLALSKEIISLHHGEIYAESPEGKGAVFTIELQL 1163 >gi|238797459|ref|ZP_04640958.1| Sensor kinase protein rcsC [Yersinia mollaretii ATCC 43969] gi|238718730|gb|EEQ10547.1| Sensor kinase protein rcsC [Yersinia mollaretii ATCC 43969] Length = 1001 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/264 (32%), Positives = 136/264 (51%), Gaps = 7/264 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 488 VLVDVSSRVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 546 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 547 PQGVDRLVTAMN---NSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHISANYL 603 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +KR+ + N+PR++ D ++Q+ N+L+NAI FT +G II + Sbjct: 604 PLVVKKRLGLYCFIEPNVPRVMMGDSVRLQQVISNLLNNAIKFTDTG--CIILQVRVRGD 661 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + RVRDTGVG+ + E+ + PF QI Q +GTGLGL + + +V+ G + Sbjct: 662 YLEFRVRDTGVGINSREINQLFDPFFQIGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVI 721 Query: 796 STPAKGTLIEIIFPLYDTSHPHDC 819 S G++ I PLY + H+ Sbjct: 722 SELGMGSIFAIRIPLYLAENRHEA 745 >gi|254195423|ref|ZP_04901851.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei S13] gi|169652170|gb|EDS84863.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei S13] Length = 1014 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/264 (32%), Positives = 132/264 (50%), Gaps = 10/264 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DIS K+ + KL A+ A++ + KS FLA +SHEIRTPL AIIG E+++ Sbjct: 505 TLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRS--- 561 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + E + ++ N +L I+ND+LD+SK+ESG+M L P + + E + Sbjct: 562 PLSEQQS-ERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYA 620 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII----STTH 731 A K + + +S + R D ++Q+ N++ NAI FT G I I + Sbjct: 621 PLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAA 679 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + V DTG+G+ + + Q S R G+GLGLPL + +V G Sbjct: 680 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 739 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSH 815 I S P GT + + PL + H Sbjct: 740 IEIDSLPDFGTTVTVALPLREARH 763 >gi|167848113|ref|ZP_02473621.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei B7210] Length = 988 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/264 (32%), Positives = 132/264 (50%), Gaps = 10/264 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DIS K+ + KL A+ A++ + KS FLA +SHEIRTPL AIIG E+++ Sbjct: 479 TLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRS--- 535 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + E + ++ N +L I+ND+LD+SK+ESG+M L P + + E + Sbjct: 536 PLSEQQS-ERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYA 594 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII----STTH 731 A K + + +S + R D ++Q+ N++ NAI FT G I I + Sbjct: 595 PLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAA 653 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + V DTG+G+ + + Q S R G+GLGLPL + +V G Sbjct: 654 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 713 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSH 815 I S P GT + + PL + H Sbjct: 714 IEIDSLPDFGTTVTVALPLREARH 737 >gi|126660147|ref|ZP_01731266.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] gi|126618590|gb|EAZ89340.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] Length = 946 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/242 (33%), Positives = 132/242 (54%), Gaps = 6/242 (2%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE+ + K +FL+ +SHE+R+PL I+G++++++ ++ L + E I+R+ L Sbjct: 570 AERANRIKDEFLSILSHELRSPLNPILGWTQLLQTKK---LEEQQVEEALAVIERNVKLQ 626 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 +++DLLD++KI GK+ L+ PV L + AI +V++ A K I ++ + +NN I Sbjct: 627 TQLIDDLLDMAKILRGKITLNMTPVDLSSTIKAAIEVVRMAAERKNISLKVNLSNNC-YI 685 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D ++QI N+LSNAI FTP GG+++I+ N++V + V DTG G+ L Sbjct: 686 KGDQGRIQQIIWNLLSNAIKFTPEGGKVMINLEQV-NQQVQITVTDTGKGIDPEFLPHIF 744 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA-KGTLIEIIFPLYDTSHP 816 + F Q S G GLGL + K +VDA+ G S KG I P + S Sbjct: 745 ESFRQEDVSITRHYGGLGLGLSIVKYLVDAHGGTIVADSLGEDKGATFLITLPWLNRSAI 804 Query: 817 HD 818 D Sbjct: 805 VD 806 >gi|24112406|ref|NP_706916.1| histidine protein kinase/phosphatase, aerobic respiration sensor-response protein, sensor for arcA [Shigella flexneri 2a str. 301] gi|24051280|gb|AAN42623.1| similar to histidine protein kinase/phosphatase, aerobic respiration sensor-response protein, sensor for arcA [Shigella flexneri 2a str. 301] gi|313650753|gb|EFS15154.1| TMAO reductase sytem sensor TorS [Shigella flexneri 2a str. 2457T] gi|332759936|gb|EGJ90237.1| TMAO reductase sytem sensor TorS [Shigella flexneri 2747-71] gi|332762781|gb|EGJ93044.1| TMAO reductase sytem sensor TorS [Shigella flexneri K-671] gi|332767790|gb|EGJ97981.1| TMAO reductase sytem sensor TorS [Shigella flexneri 2930-71] gi|333019955|gb|EGK39226.1| TMAO reductase sytem sensor TorS [Shigella flexneri K-304] Length = 809 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/250 (34%), Positives = 133/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FL +SHEIRTPL I+G ++++ + P N + + D Sbjct: 337 QARAEAEKASQAKSAFLTAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLQAITD- 392 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 393 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 449 Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 450 TAIADDVPSALMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRTDGEQWLVEVEDSGC 507 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 508 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 563 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 564 RLPLRVATAP 573 >gi|88857651|ref|ZP_01132294.1| putative sensor protein [Pseudoalteromonas tunicata D2] gi|88820848|gb|EAR30660.1| putative sensor protein [Pseudoalteromonas tunicata D2] Length = 648 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 106/365 (29%), Positives = 181/365 (49%), Gaps = 24/365 (6%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++L+ S G+ I++ E I N ++ E+++ + Q S +NH L Sbjct: 9 AVLDQLSIGVFIVDAEFNIQFWNTWMANSSQLSAENVVGQSLFNLYPQLINSRLNHALIA 68 Query: 516 ILSLDLRQTLEKITLGS-----TKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKN 569 L L ++ S + ++L+ I +K SC + + D+S + Sbjct: 69 SKEQKLPSVLSRVFNASPLPLFNQAKQLIKQSITVKPASMCESCSIIQVIDVSNAVAREK 128 Query: 570 KLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 L K++ E++ + KS FLA +SHEIRTPL +IG E++ ++ PL + + ++ Sbjct: 129 ALE--KQVLERQRAEAAKSAFLANMSHEIRTPLNGVIGMLELVADE---PLSD-KLQQFL 182 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQLYANEKRI 684 S +L I+ND+LD SKIE+GK+++ FE ++ E + I+ AN+K I Sbjct: 183 QIASNSAESLLFIINDILDFSKIEAGKVDIDPVEFELLTFFEDI---IASFIPAANKKAI 239 Query: 685 -LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILR 740 LI S + AD + V+QI +N+LSNAI FT G ++ + + +++ + Sbjct: 240 SLIFDSSHLETTLVRADKQRVRQILVNLLSNAIKFTEQGEVVVEVYLQKIDSQTAQLVCK 299 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+G+ + + K +PF Q +S R GTGLGL +AK + G+ + S K Sbjct: 300 VLDTGIGIEAHVIAKLFEPFQQSDSSISRRFGGTGLGLAIAKQLCHLMGGELTLSSKVGK 359 Query: 801 GTLIE 805 G+ E Sbjct: 360 GSCFE 364 >gi|325916989|ref|ZP_08179230.1| putative periplasmic ligand-binding sensor domain [Xanthomonas vesicatoria ATCC 35937] gi|325536799|gb|EGD08554.1| putative periplasmic ligand-binding sensor domain [Xanthomonas vesicatoria ATCC 35937] Length = 1185 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/242 (32%), Positives = 130/242 (53%), Gaps = 8/242 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S K+ FLA + HE+RTP+T ++G SE++ + R YA+ I Sbjct: 795 HKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTSL----DARQQGYASAIQS 850 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 +G +L +VND LD+++IE+GK+ L L + +A+ LV+ A +K++ + + Sbjct: 851 AGKHLLRLVNDALDLARIEAGKLPLDNRDFDLRLLIGQAVELVRPSAEQKQLAFECALDD 910 Query: 693 NIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI-LRVRDTGVGMT 749 +P L D V+QI LN+L NA+ FT GG Q+ +S S + I + V DTG GM+ Sbjct: 911 ALPPALHGDASRVQQILLNLLFNAVKFTERGGVQLRVSALPQSPAQGIRVEVCDTGPGMS 970 Query: 750 NYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + + F Q + + R G+GLGL + + + A G + S +G + Sbjct: 971 AEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGAVSVDSELGQGACFVVEL 1030 Query: 809 PL 810 PL Sbjct: 1031 PL 1032 >gi|160937196|ref|ZP_02084558.1| hypothetical protein CLOBOL_02086 [Clostridium bolteae ATCC BAA-613] gi|158439760|gb|EDP17509.1| hypothetical protein CLOBOL_02086 [Clostridium bolteae ATCC BAA-613] Length = 770 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/244 (33%), Positives = 130/244 (53%), Gaps = 19/244 (7%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP-RYIEYANYIDR 632 A+K AE + K++F +SH+IRTP+ AIIG +E+ N L +P + + I R Sbjct: 248 ARKAAESANEAKTNFFTSMSHDIRTPMNAIIGMTEIAVNH----LDDPNKTMNCLGQIRR 303 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK----RILIRT 688 SG L++ +VND+LD++KIESGKM +H E SL E + + ++ EK +I IR Sbjct: 304 SGKLLVGLVNDILDMAKIESGKMEIHAERTSLAELIENIVVVITPLVKEKNQDFQICIRE 363 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS-----TTHTSNEEVILRVRD 743 + ++ D + Q+ +N++SNAI FTP GG I ++ + H V D Sbjct: 364 VRHEH---LMLDSVRMNQVLMNLISNAIKFTPEGGSIRVTVEESLSPHPGQAHFTFTVSD 420 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM-GKFYIFSTPAKGT 802 TG+GM+ F + +S+ EG+GLG+ + M+ ANM G + S P G+ Sbjct: 421 TGMGMSREFQNNIFTAFVRERDSRVDHIEGSGLGMAIT-GMIVANMGGSIRVESEPGMGS 479 Query: 803 LIEI 806 + + Sbjct: 480 IFTV 483 >gi|254299737|ref|ZP_04967186.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 406e] gi|157809305|gb|EDO86475.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 406e] Length = 1035 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/264 (32%), Positives = 132/264 (50%), Gaps = 10/264 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DIS K+ + KL A+ A++ + KS FLA +SHEIRTPL AIIG E+++ Sbjct: 526 TLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRS--- 582 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + E + ++ N +L I+ND+LD+SK+ESG+M L P + + E + Sbjct: 583 PLSEQQS-ERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYA 641 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII----STTH 731 A K + + +S + R D ++Q+ N++ NAI FT G I I + Sbjct: 642 PLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAA 700 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + V DTG+G+ + + Q S R G+GLGLPL + +V G Sbjct: 701 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 760 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSH 815 I S P GT + + PL + H Sbjct: 761 IEIDSLPDFGTTVTVALPLREARH 784 >gi|253699184|ref|YP_003020373.1| histidine kinase [Geobacter sp. M21] gi|251774034|gb|ACT16615.1| histidine kinase [Geobacter sp. M21] Length = 550 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/255 (31%), Positives = 132/255 (51%), Gaps = 10/255 (3%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q +L+ A++ +E + K++FLA +SHE+RTPL +G ++ + G + +E Sbjct: 288 QAGERLAVAQRQSEAANRAKTEFLANMSHEMRTPLAGALGMIRLVLDMNIGA-EERQLLE 346 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A RS + ++ I+ DLLD S++E+G M +P L E V A+ +V L A EK + Sbjct: 347 MAK---RSADSLVRIIADLLDFSRLEAGVMTFEDKPFLLKEVVRSAVEVVSLVAEEKGLS 403 Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIIST---THTSNEEVI-L 739 + + +P L D ++Q+ +N+L NA+ FT GG ++ I T E+ + Sbjct: 404 LSWAVNAAVPEQLRGDEGRLRQVLVNLLGNAVKFTERGGIEVGIGTFEPLEAQGEQYVEF 463 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 VRDTGVG+ +LE+ F Q+ +S R GTGLGL L + +V+ G + S Sbjct: 464 SVRDTGVGIPADQLERIFDRFTQVDSSLTRRHGGTGLGLALTRQIVEKMGGSIWAESVVG 523 Query: 800 KGTLIEIIFPLYDTS 814 G+ P+ + Sbjct: 524 SGSTFHFTVPMVSNA 538 >gi|170695068|ref|ZP_02886216.1| multi-sensor hybrid histidine kinase [Burkholderia graminis C4D1M] gi|170139920|gb|EDT08100.1| multi-sensor hybrid histidine kinase [Burkholderia graminis C4D1M] Length = 933 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 133/239 (55%), Gaps = 6/239 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ +L+ AK+ A+ + K FLA +SHE+RTPL I+G+++++K + + R++ Sbjct: 460 RERTAELAVAKERADAANQAKGAFLAHMSHELRTPLNGILGYAQILKCDKNL---DRRHV 516 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I RSG +L I+ND+LD++K+E+GK L V L+ + +++ A EK + Sbjct: 517 DGITVIQRSGEHLLAIINDILDMAKMEAGKAELTLSDVPLEGFIYFIAETIRVKAMEKGL 576 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 A N+P + D + ++Q+ LN+LSNAI FT +G + + + VRD Sbjct: 577 AFACELAPNLPAAVRVDEKRLRQVLLNLLSNAIKFTETGS-VRLRVGWMPPARLSFEVRD 635 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TG+G+ L +PF Q+ +++ G GTGLGL +++ ++ G+ + S G+ Sbjct: 636 TGIGIHEARLGAIFRPFEQVSDARHQIG-GTGLGLTISRQLLRLMGGEIRVDSRHGAGS 693 >gi|167725871|ref|ZP_02409107.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei DM98] Length = 927 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/264 (32%), Positives = 132/264 (50%), Gaps = 10/264 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DIS K+ + KL A+ A++ + KS FLA +SHEIRTPL AIIG E+++ Sbjct: 418 TLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRS--- 474 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + E + ++ N +L I+ND+LD+SK+ESG+M L P + + E + Sbjct: 475 PLSEQQS-ERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYA 533 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII----STTH 731 A K + + +S + R D ++Q+ N++ NAI FT G I I + Sbjct: 534 PLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAA 592 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + V DTG+G+ + + Q S R G+GLGLPL + +V G Sbjct: 593 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 652 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSH 815 I S P GT + + PL + H Sbjct: 653 IEIDSLPDFGTTVTVALPLREARH 676 >gi|296123452|ref|YP_003631230.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus DSM 3776] gi|296015792|gb|ADG69031.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus DSM 3776] Length = 576 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/252 (32%), Positives = 132/252 (52%), Gaps = 29/252 (11%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K++FLA +SHE+RTPL +I+GFSEV+ + P RY+ + I +G +L+++ND+ Sbjct: 299 KNEFLATMSHELRTPLNSILGFSEVLLSTSTLPDKQRRYV---SNIQTAGKNLLNLINDV 355 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD++KIESG+M LH S+ + V + + A +K + + + + +P + D + Sbjct: 356 LDLAKIESGRMELHPSDFSIYDLVERQVGSLMPLAEKKHLELTSEVSPEVPLLWQDAGKL 415 Query: 705 KQIALNILSNAIHFTPSGGQIIIST----THTSNEE----------------VILRVRDT 744 +QI N+LSNAI FTP GG++ + S EE L V DT Sbjct: 416 QQILGNLLSNAIKFTPDGGKVRVKVDLCPAERSPEEQTETIEAGDAPPVLDHFALIVEDT 475 Query: 745 GVGMTNYELEKAMKPFGQ---IPNSQQI---RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 G+G+ E E+ + F Q P + + EGTGLGL + + + G+ + S Sbjct: 476 GIGIPLEEQERVFEKFRQGQSTPGQKDLLTREYEGTGLGLSIVRELSRLMGGEVRLQSEF 535 Query: 799 AKGTLIEIIFPL 810 KG++ ++ PL Sbjct: 536 GKGSVFTVVLPL 547 >gi|242783978|ref|XP_002480294.1| sensor histidine kinase/response regulator, putative [Talaromyces stipitatus ATCC 10500] gi|218720441|gb|EED19860.1| sensor histidine kinase/response regulator, putative [Talaromyces stipitatus ATCC 10500] Length = 2394 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/273 (31%), Positives = 139/273 (50%), Gaps = 37/273 (13%) Query: 565 KQEKNKLSHAK------KIAEKESSH-----------KSDFLARVSHEIRTPLTAIIGFS 607 + +K L+ A+ KIAE E++H KS FLA VSH++RTP+ +IG S Sbjct: 1853 ESQKRALAQAREAEQKAKIAEAEANHNVKLKEDAARAKSVFLANVSHDLRTPMNGVIGLS 1912 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 E++K + + Y I + +L ++ND+LD SK+E+GKM + P+SL E Sbjct: 1913 ELLKGTKL----DKEQDNYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLSLKET 1968 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR---ILADLRSVKQIALNILSNAIHFTPSGGQ 724 + E + ++ Y + R L + +P ++ D + QI +N+LSN+ FTP G Sbjct: 1969 IREVVRALR-YTHRDRGLETIEDLDKVPEDLVVMGDPVRLHQIFMNLLSNSYKFTPKG-- 2025 Query: 725 IIISTTHTSNEEVILRVR------DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 + + E RVR DTG+G+ + +PF Q NS G+GLGL Sbjct: 2026 -YVKVSAMVVREGKGRVRLECSVADTGIGIPEEHKSRLFRPFSQADNSTARSYGGSGLGL 2084 Query: 779 PLAKAMVDANMGKF-YIFSTPAKGTLI--EIIF 808 + KA+++ +G ++ STP GT + +++F Sbjct: 2085 SICKAIIEDVLGGLIWLDSTPGVGTTVTFQLVF 2117 >gi|323976628|gb|EGB71716.1| TMAO reductase sytem sensor TorS [Escherichia coli TW10509] Length = 904 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 133/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLV 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TEIADDVPTALMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPSKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRIATAP 658 >gi|159905754|ref|YP_001549416.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C6] gi|159887247|gb|ABX02184.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C6] Length = 639 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 127/226 (56%), Gaps = 4/226 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+ +A VSHE+RTPLT+I G+ E++ + G + + + + D + + ++ + Sbjct: 413 KSELIAIVSHELRTPLTSIKGYVELVLDGTMGAINDSQK-KCLQVADDNIVRLRRLIESM 471 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+SKIE G++ ++ E V+L V + I +Q A EK I ++ I AD + Sbjct: 472 LDLSKIERGELEMYREKVNLKGIVCDVIEYLQPIATEKNIKLKKEIEE--IAIDADKDRI 529 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 Q+ N++ NAI F+P+ I+IS +E V LRV D G G+ ++EK F Q+ Sbjct: 530 TQVLTNLIENAIKFSPANESIMISA-DLEDEHVHLRVTDHGAGIPKKDMEKVFNRFYQVD 588 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +S + + G+GLGL + K++V+A+ G ++ S KG+ II PL Sbjct: 589 SSTKRKKGGSGLGLAVCKSIVEAHKGSIWVESELGKGSTFHIILPL 634 >gi|86137741|ref|ZP_01056317.1| sensory box sensor histidine kinase/response regulator [Roseobacter sp. MED193] gi|85825333|gb|EAQ45532.1| sensory box sensor histidine kinase/response regulator [Roseobacter sp. MED193] Length = 810 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/248 (31%), Positives = 129/248 (52%), Gaps = 16/248 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q N L+ AK AE KS+FLA +SHEIRTP+ I+G +E++ G E Sbjct: 417 QRNNDLTDAKVAAESADRAKSEFLANMSHEIRTPMNGILGMAELMSEADLGA----EERE 472 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD--EAVSEAISLVQLYANEKR 683 Y I S N +L I+ND+LD+S++E+G+ L PV D V+ A++L++ A EK Sbjct: 473 YLTTIQDSSNALLKIINDILDLSRLEAGR--LAISPVDFDLRNCVAGAVNLLRPKAREKG 530 Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VI 738 + + FA N+P ++ D ++QI +N++ NA+ FT GG + T +E+ + Sbjct: 531 LWMSVDFAENLPEQVYGDDGRLRQILVNLIGNAVKFTSEGG---VDVKVTCDEQDPYSLE 587 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V DTG+G+++ + E F Q + GTGLGL ++ + G + Sbjct: 588 IAVEDTGIGISDSQAEYIFDRFAQADAAITRAFGGTGLGLTISSILAKRMGGGIELCRAR 647 Query: 799 AKGTLIEI 806 +G+ + Sbjct: 648 EEGSCFRL 655 >gi|167913353|ref|ZP_02500444.1| two-component system sensor protein [Burkholderia pseudomallei 112] Length = 927 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/264 (32%), Positives = 132/264 (50%), Gaps = 10/264 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DIS K+ + KL A+ A++ + KS FLA +SHEIRTPL AIIG E+++ Sbjct: 418 TLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRS--- 474 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + E + ++ N +L I+ND+LD+SK+ESG+M L P + + E + Sbjct: 475 PLSEQQS-ERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYA 533 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII----STTH 731 A K + + +S + R D ++Q+ N++ NAI FT G I I + Sbjct: 534 PLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAA 592 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + V DTG+G+ + + Q S R G+GLGLPL + +V G Sbjct: 593 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 652 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSH 815 I S P GT + + PL + H Sbjct: 653 IEIDSLPDFGTTVTVALPLREARH 676 >gi|226198683|ref|ZP_03794247.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei Pakistan 9] gi|225929123|gb|EEH25146.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei Pakistan 9] Length = 1032 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/264 (32%), Positives = 132/264 (50%), Gaps = 10/264 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DIS K+ + KL A+ A++ + KS FLA +SHEIRTPL AIIG E+++ Sbjct: 523 TLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRS--- 579 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + E + ++ N +L I+ND+LD+SK+ESG+M L P + + E + Sbjct: 580 PLSEQQS-ERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYA 638 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII----STTH 731 A K + + +S + R D ++Q+ N++ NAI FT G I I + Sbjct: 639 PLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAA 697 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + V DTG+G+ + + Q S R G+GLGLPL + +V G Sbjct: 698 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 757 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSH 815 I S P GT + + PL + H Sbjct: 758 IEIDSLPDFGTTVTVALPLREARH 781 >gi|254189618|ref|ZP_04896128.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei Pasteur 52237] gi|254264527|ref|ZP_04955392.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1710a] gi|157937296|gb|EDO92966.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei Pasteur 52237] gi|254215529|gb|EET04914.1| response regulator/sensor histidine kinase [Burkholderia pseudomallei 1710a] Length = 1014 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/264 (32%), Positives = 132/264 (50%), Gaps = 10/264 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DIS K+ + KL A+ A++ + KS FLA +SHEIRTPL AIIG E+++ Sbjct: 505 TLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRS--- 561 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + E + ++ N +L I+ND+LD+SK+ESG+M L P + + E + Sbjct: 562 PLSEQQS-ERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYA 620 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII----STTH 731 A K + + +S + R D ++Q+ N++ NAI FT G I I + Sbjct: 621 PLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAA 679 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + V DTG+G+ + + Q S R G+GLGLPL + +V G Sbjct: 680 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 739 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSH 815 I S P GT + + PL + H Sbjct: 740 IEIDSLPDFGTTVTVALPLREARH 763 >gi|297583656|ref|YP_003699436.1| multi-sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] gi|297142113|gb|ADH98870.1| multi-sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] Length = 597 Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 96/368 (26%), Positives = 184/368 (50%), Gaps = 28/368 (7%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 R E + +L +++E G+ +IN G IL N + +F ED + P +++ + Sbjct: 237 RTYESQQERLETLIENMGSGLILINDTGDILLVNHSCDAIFQ---EDTAKWPGSLYYQVI 293 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGS---TKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561 +N ++ ++ + R+ +I+L S + II L HDI Sbjct: 294 KNKKINTFIQKVFLTEERKR-RQISLASGIYMHHYDVHGAPIIASDGDLKGIV-LVFHDI 351 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E K KL A+K DF+A VSHE++TP+T++ GF+E + G + + Sbjct: 352 TELK----KLEKARK----------DFVANVSHELKTPVTSLKGFTETLLE---GAVNDD 394 Query: 622 RY-IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 +++ I + + ++ +LL++S+IE +L+++ V ++ + E ++ A+ Sbjct: 395 ELRMKFLRIIANESDRLETLIFELLELSRIEGEAFSLNWQTVDIEPLIDEVFDMLGEKAS 454 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K++ I + + P + + +KQI +N+++NAI +T GG I + + E+V+L Sbjct: 455 AKQMTIEKKISGS-PILAGEGARIKQILINLINNAIVYTHEGGTITVRVKEQA-EQVVLE 512 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+G++ E+ + + F ++ ++ GTGLGL + K + +A+ K + S P K Sbjct: 513 VEDTGIGLSKKEIPRIFERFYRVDRARSRNSGGTGLGLAIVKHLAEAHRAKLSVDSEPGK 572 Query: 801 GTLIEIIF 808 GT I F Sbjct: 573 GTTFRIAF 580 >gi|254785705|ref|YP_003073134.1| sensory box histidine kinase/response regulator [Teredinibacter turnerae T7901] gi|237685079|gb|ACR12343.1| sensory box histidine kinase/response regulator [Teredinibacter turnerae T7901] Length = 737 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/243 (32%), Positives = 132/243 (54%), Gaps = 3/243 (1%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 +++L AK AE+ + KS+FL+ +SHE+RTPL AIIG+++V+ + + + Sbjct: 344 QDRLVIAKAKAEEANLAKSEFLSLMSHELRTPLQAIIGYTDVVIEDLYVEGMDHLSTDLT 403 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 ++ S L L ++N +LD++KIESG M+L E + L V+EAI V+ +EK + + Sbjct: 404 RVVNNSQRL-LRLINGVLDLAKIESGHMDLTLEHLELHSLVNEAIDNVKPQFDEKNLPLE 462 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 T + L D + I LN+LSNA FT G++ ++ H +N + + RDTG+G Sbjct: 463 TDLESIPEAALVDREKLLHIILNLLSNACKFTDR-GRVTLAVKHNAN-AITITCRDTGMG 520 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + L F Q+ +S + G+GLGL + K + G + S P +GT ++ Sbjct: 521 IDAAALPFVFDRFQQVDSSATRQHSGSGLGLAITKQFCELMGGHITVNSEPGRGTHFKVE 580 Query: 808 FPL 810 PL Sbjct: 581 IPL 583 >gi|220909140|ref|YP_002484451.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865751|gb|ACL46090.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1391 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 86/274 (31%), Positives = 136/274 (49%), Gaps = 27/274 (9%) Query: 560 DISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 DI+ KQ + + H A++ AE + K +FLA +SHE+RTPL I+G+ ++++ Sbjct: 965 DITLRKQLEQQREHLLIQEQTAREQAELANRMKDEFLAVLSHELRTPLNPILGWCKLLQT 1024 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + F P R +E I+R+ L + ++ DLLD SKI GK+ L PV L ++ A+ Sbjct: 1025 RPFEP---ARAMEALRTIERNAQLQVQLIEDLLDFSKIVQGKLPLQIAPVQLSSIITAAL 1081 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST--- 729 V+L A K I ++T + + D ++Q+ N+LSNAI FTP GGQ+ + Sbjct: 1082 ESVRLAAEAKTIQLQTCLDQHPILVWGDANRLQQVVWNLLSNAIKFTPEGGQVEVRLESG 1141 Query: 730 ------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 +TS+ I V DTG G+ + L F Q + R G GLG Sbjct: 1142 EGSPGKRAHPMPVNTSSYAQIC-VIDTGKGIASDFLPHVFDYFRQEDGAMTRRYGGLGLG 1200 Query: 778 LPLAKAMVDANMGKFYIFSTP-AKGTLIEIIFPL 810 L + K +V+ + G+ + S +G + PL Sbjct: 1201 LAIVKQIVEMHGGRIWAESPGLGEGATFTVRLPL 1234 >gi|160941292|ref|ZP_02088629.1| hypothetical protein CLOBOL_06185 [Clostridium bolteae ATCC BAA-613] gi|158435853|gb|EDP13620.1| hypothetical protein CLOBOL_06185 [Clostridium bolteae ATCC BAA-613] Length = 805 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 122/234 (52%), Gaps = 15/234 (6%) Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 SDFL+R+SH+IRTP+ AIIG +E + G R +Y N I SG +L ++N++L Sbjct: 414 SDFLSRMSHDIRTPMNAIIGMTE-LAQLHIGDEEKQR--DYLNKIASSGAHLLGLINEIL 470 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQL----YANEKRILIRTSFANNIPRILADL 701 D+SKIESG M L P++L EA +V++ E ++ I SF P ++ D Sbjct: 471 DVSKIESGVMELSESPLNLRALAGEAAEMVRISMENSQQEFQVDIDESFD---PWVMGDA 527 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKA 756 R ++Q+ +NIL NA +T G+I S EE + DTG+GM +E Sbjct: 528 RRIRQVLVNILENASKYTGQRGKITFSVCEFKKEEQRTGTYRFIIEDTGIGMKPEYMEHI 587 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +PF + +S+ + GTGLG+ + K ++ G + S KG+ + L Sbjct: 588 FEPFSRADDSRTSKVPGTGLGMTIVKNLISMMDGDIRVESEYGKGSRFTVTLCL 641 >gi|213970545|ref|ZP_03398672.1| extracellular solute-binding protein/sensory box protein [Pseudomonas syringae pv. tomato T1] gi|213924716|gb|EEB58284.1| extracellular solute-binding protein/sensory box protein [Pseudomonas syringae pv. tomato T1] Length = 1062 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 139/253 (54%), Gaps = 10/253 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DIS+ +Q L AK+ A+ S KS FLA +SHEIRTP+ A+IG E+ +K G L Sbjct: 691 DISDRRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADQGEL 750 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + IE A S N +LD++ D+LDI++IESG++ L+ E +L + V + + Sbjct: 751 -DRSAIEVAY---SSANDLLDLIGDILDIARIESGRLALNPERANLRQLVESVLRVFDGL 806 Query: 679 ANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE 736 A +K + + + I +L D KQI N++SNAI FTP G +I + + + Sbjct: 807 ARQKDLDLVLELDSRINTDVLIDPLRFKQILSNLVSNAIKFTPMGRVKIALQAVDNPDPQ 866 Query: 737 VI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ + V+D+G+G++ + ++ +PF Q N+ Q+ G GLGL + +++ G Sbjct: 867 LLHLHITVQDSGIGISVEDQKRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMMGGNLS 926 Query: 794 IFSTPAKGTLIEI 806 + S P GT I + Sbjct: 927 LDSEPGNGTRISM 939 >gi|322385036|ref|ZP_08058686.1| sensor histidine kinase VicK [Streptococcus cristatus ATCC 51100] gi|321270946|gb|EFX53856.1| sensor histidine kinase VicK [Streptococcus cristatus ATCC 51100] Length = 454 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 102/383 (26%), Positives = 181/383 (47%), Gaps = 42/383 (10%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R+ +E E +L SIL +DG+ NR G I++ N +K G +D+L Sbjct: 83 RLTHENLEQETKRLSSILSYMTDGVLATNRRGQIITINDMATKQLGVKRDDVLNTSILDL 142 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKI---TLGSTKEE-KLLSLRI----IIKKLPFSS 552 L+ + + Y DLR+ + K+ T+ S E + +SLR+ I ++ F S Sbjct: 143 LD-----IADEY-------DLRELITKVPELTIDSQDENGEYVSLRVRFALIRRESGFIS 190 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 +HD +E +KE + F++ VSHE+RTPLT++ + E + + Sbjct: 191 GLVAVLHDTTE--------------QDKEERERRLFVSNVSHELRTPLTSVKSYLEALDD 236 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 G L P E+ N ++ +V DLL +S+I++ +L E + ++ + Sbjct: 237 ---GALSEPVAPEFVKVSLTETNRMMRMVTDLLSLSRIDNNTSHLDVELTNFTAFITYIL 293 Query: 673 SLVQLYANE---KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 + N+ K+ I ++ + D + Q+ NI++NAI ++P GG I +S Sbjct: 294 NRFDKIKNQDETKKYEIIRDYSITPIWVEIDTDKMTQVIDNIMNNAIKYSPDGGTITVSV 353 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 T++ ++IL + D G+G+ +L K F ++ ++ GTGLGL +AK ++ + Sbjct: 354 -RTTDVQLILSISDEGLGIPKQDLPKIFDRFYRVDKARSRAQGGTGLGLAIAKEIIKQHH 412 Query: 790 GKFYIFSTPAKGTLIEIIFPLYD 812 G + S KG+ I+ P YD Sbjct: 413 GFIWAKSEYGKGSTFTIVLP-YD 434 >gi|34557246|ref|NP_907061.1| sensory transduction histidine kinase [Wolinella succinogenes DSM 1740] gi|34482962|emb|CAE09961.1| SENSORY TRANSDUCTION HISTIDINE KINASE [Wolinella succinogenes] Length = 1555 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 118/222 (53%), Gaps = 6/222 (2%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + KS+FLA +SHEIRTP+ AIIG + + + PL +Y I+ S N +L ++ Sbjct: 850 TQEKSNFLANMSHEIRTPMNAIIGMTYLAQQTDLTPLQR----DYLQKIEGSANALLGLI 905 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700 ND+LD SKIE+GK+ + L + +LV+L A EK + S+ + L D Sbjct: 906 NDILDFSKIEAGKLEIECIDFDLHSVIEHVSTLVELKATEKNLEFVVSYDQGMNMNLHGD 965 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 + QI N+ +NAI FT G ++ I T VRDTG+G++ + EK + F Sbjct: 966 PLRLGQILTNLANNAIKFTHEG-EVGIYITKQELHRYRFEVRDTGIGLSPGQKEKLFRSF 1024 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 Q S + GTGLGL ++K +V+ G+ ++ S KG+ Sbjct: 1025 SQADTSTTRQYGGTGLGLAISKQLVEMMNGRIWVESEEGKGS 1066 >gi|186682207|ref|YP_001865403.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186464659|gb|ACC80460.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1098 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/252 (32%), Positives = 137/252 (54%), Gaps = 11/252 (4%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI++ K+ + L AK+ A+ + KS FL+ +SHE+RTPL I+GF++++ R Sbjct: 600 RDITKLKKTEAALKQAKETADAANLAKSQFLSNMSHELRTPLNIILGFTQLLLRNRS--- 656 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N + EY + I+RSG +L ++ND+L++SKIE+G++ L L + + L Sbjct: 657 LNSQQQEYLDTINRSGEDLLTLINDVLEMSKIEAGRVILSETNFDLYGLLDRLQQMFALK 716 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--- 734 A + + + + IP+ I AD ++Q+ +N+L NAI FT G + T N Sbjct: 717 AQSRGLQLILERSPTIPQYICADESKLRQVLVNLLGNAIKFTRIGQVTLRVETPNQNITP 776 Query: 735 -EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 E + L V DTG G+ + + + +PF Q Q+ + EGTGLGLP+++ V G Sbjct: 777 DEPITLNFSVEDTGCGIADSDFNRLFEPFVQTEAGQKAQ-EGTGLGLPISQRFVQLMGGD 835 Query: 792 FYIFSTPAKGTL 803 + ST KG++ Sbjct: 836 IRVNSTLGKGSI 847 >gi|160889978|ref|ZP_02070981.1| hypothetical protein BACUNI_02412 [Bacteroides uniformis ATCC 8492] gi|270294654|ref|ZP_06200856.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317481371|ref|ZP_07940439.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|156860366|gb|EDO53797.1| hypothetical protein BACUNI_02412 [Bacteroides uniformis ATCC 8492] gi|270276121|gb|EFA21981.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316902467|gb|EFV24353.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 497 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 82/248 (33%), Positives = 131/248 (52%), Gaps = 7/248 (2%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 ++K +NKL+ A + A++ KS FLA +SHEIRTPL AI+GFS ++ L Sbjct: 252 QKYKDTENKLNEALQKAQRSDELKSVFLANMSHEIRTPLNAIVGFSTLLACGD-ADLSRQ 310 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 +E+ + I+++ L++ +++D+LD+SKIES M HFE VSL+ + E+I Q Sbjct: 311 EIMEFTSLIEKNSQLLMVLISDILDLSKIESNTMEFHFEKVSLN-GILESIYSAQKMNLR 369 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 K + + + I D + Q+ N+++NA+ FT G+I I + + V Sbjct: 370 KGVELLLDLPDRAAVIYTDPTRLGQVVNNLINNAVKFTAE-GRITIGYRLKDFATLEVFV 428 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG GM+ L + F + Q GTGLGL + + +V+ GK + ST KG Sbjct: 429 EDTGTGMSEEVLAHIFERFYKGDAFVQ----GTGLGLAICRTIVERFHGKIEVASTLGKG 484 Query: 802 TLIEIIFP 809 + I+ P Sbjct: 485 SRFAIVLP 492 >gi|308187945|ref|YP_003932076.1| hybrid sensory histidine kinase [Pantoea vagans C9-1] gi|308058455|gb|ADO10627.1| hybrid sensory histidine kinase [Pantoea vagans C9-1] Length = 911 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 135/241 (56%), Gaps = 16/241 (6%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL ++GF+ +++K Q +Y Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVLGFTRQMLKTQL-----RTTQRDYMQ 332 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS N +L I+ND+LD SK+E+GK+ L P L + E + L+ A+EK + + Sbjct: 333 TIERSANNLLSIINDVLDFSKLEAGKLMLEAIPFPLRATLDETLVLLAPSAHEKGLELTV 392 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSG------GQIIISTTHTSNEEVILRV 741 +++P ++ D ++QI +N++ NAI FT G GQ +I+ + E+ ++V Sbjct: 393 VCDSSVPDNVIGDALRLQQILINLIGNAIKFTEKGYIGLRVGQRVITQSRV---ELEIQV 449 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G+G++ + + + F Q S R GTGLGL + + +V G+ S P +G Sbjct: 450 EDSGIGISEQQQTQLFQAFRQADASISRRHGGTGLGLVITQKLVREMGGEITFSSQPDQG 509 Query: 802 T 802 + Sbjct: 510 S 510 >gi|301385098|ref|ZP_07233516.1| PAS [Pseudomonas syringae pv. tomato Max13] Length = 1046 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 139/253 (54%), Gaps = 10/253 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DIS+ +Q L AK+ A+ S KS FLA +SHEIRTP+ A+IG E+ +K G L Sbjct: 675 DISDRRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADQGEL 734 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + IE A S N +LD++ D+LDI++IESG++ L+ E +L + V + + Sbjct: 735 -DRSAIEVAY---SSANDLLDLIGDILDIARIESGRLALNPERANLRQLVESVLRVFDGL 790 Query: 679 ANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE 736 A +K + + + I +L D KQI N++SNAI FTP G +I + + + Sbjct: 791 ARQKDLDLVLELDSRINTDVLIDPLRFKQILSNLVSNAIKFTPMGRVKIALQAVDNPDPQ 850 Query: 737 VI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ + V+D+G+G++ + ++ +PF Q N+ Q+ G GLGL + +++ G Sbjct: 851 LLHLHITVQDSGIGISVEDQKRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMMGGNLS 910 Query: 794 IFSTPAKGTLIEI 806 + S P GT I + Sbjct: 911 LDSEPGNGTRISM 923 >gi|239905687|ref|YP_002952426.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239795551|dbj|BAH74540.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 705 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 104/400 (26%), Positives = 190/400 (47%), Gaps = 40/400 (10%) Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 ++ + N+ +E ++ +IL ++ I ++ ++ +I N ++FGY ++++ Sbjct: 175 EISLKKNQAILEKHLLWKENILNTSAVAILVVVKDRVIADANIGFEEMFGYSKKELIGHS 234 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----- 551 M H E+ + KI T K++ +KK S Sbjct: 235 VR----------MLHVDGELF-----EQYGKINWSQTSTTKVVKCEWKLKKKDGSIIICE 279 Query: 552 -SCYSLTMHDISE---W--------KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 S ++ HD+SE W K+ +++L +KKIA+ + KS+FLA +SHEIRTP Sbjct: 280 VSGSAINPHDLSEGVIWIATNITEKKKFESELISSKKIADAANKAKSEFLANMSHEIRTP 339 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 L I+G +++++ + N + EY + SG + +++ +LD+S+IE G L Sbjct: 340 LNGILGMLQLLESTQ----TNHQQSEYIDIALNSGRNLNKLISGILDLSRIEQGNTTLES 395 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHF 718 ++ + + ++ + K++LI T+ A +P ++ D ++QI NI+ N+I F Sbjct: 396 HGFNIKHLIDDIVNTFITELSSKKLLITTTIAKIMPDVIYGDSGRLRQIIFNIVGNSIKF 455 Query: 719 TPSGGQIIISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 TP G I + TS V + + DTG+G+ +L+ PF Q+ S + G GL Sbjct: 456 TPFGSVAISIDSLTSGNTIHVFIEISDTGIGIPEDKLDDIFYPFTQLDGSLTRKYGGVGL 515 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 GL + K + A G + S + GT I P + T+ P Sbjct: 516 GLSIVKKQLLAMEGSITVESNESGGTKTCIAIP-FKTNEP 554 >gi|225569214|ref|ZP_03778239.1| hypothetical protein CLOHYLEM_05296 [Clostridium hylemonae DSM 15053] gi|225162013|gb|EEG74632.1| hypothetical protein CLOHYLEM_05296 [Clostridium hylemonae DSM 15053] Length = 678 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 137/254 (53%), Gaps = 9/254 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++++ L A K A S K++FL+ +SH+IRTP+ AI+G + + + + P + Sbjct: 266 EQERQRKMLEDAYKTARIASEAKTNFLSSMSHDIRTPMNAIMGMTAIAEANLYTP---DK 322 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + + I+ S +L ++N++LD+SKIESGK++L F VSL E + + A EK Sbjct: 323 LKDCLSKINASAQHLLGLINEVLDMSKIESGKIDLTFGTVSLPELFQNISDMCRPLAQEK 382 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI--- 738 ++ S + + ++ D ++Q+ +N+L+NAI +TP GG I + ++ V Sbjct: 383 NQKLQLSVDDVCHKTVITDGGRLQQVLMNLLTNAIKYTPEGGAISLHVREIPSDAVYKGQ 442 Query: 739 --LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V D G+GMT + +PF + +++ + +GTGLGL + + +V+ G + S Sbjct: 443 YEFIVTDNGIGMTAEYIPHIFEPFSRAEDTRINKIQGTGLGLAITQNIVNMMNGTIEVQS 502 Query: 797 TPAKGTLIEIIFPL 810 P G+ + PL Sbjct: 503 EPENGSRFIVAVPL 516 >gi|312879472|ref|ZP_07739272.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] gi|310782763|gb|EFQ23161.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] Length = 925 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 133/252 (52%), Gaps = 10/252 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M +I+E K+ + L A+ AE S K FL+ +SHEIRTP+ AI+G SE++ + Sbjct: 379 VMVEITERKRMEEDLREARDRAESSSEAKMAFLSHMSHEIRTPMNAIVGLSELLLEE--C 436 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P R E I + +++++ D+LD+SKIE+G++ L EP L+E SL+ Sbjct: 437 PHDPQR--EQLRLIREASGSLMELLGDILDLSKIEAGRLELDHEPFDLEETCRSVCSLLG 494 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A K ++ A + L D ++Q+ N++ NA+ FT G++ ++ E Sbjct: 495 MEAKRKGLVFSWDVAPSAQGFFLGDSFRLRQVLWNLVGNAVKFTER-GRVHVTAWGEQGE 553 Query: 736 ----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 +V RV+DTG+G+ LE+ + F Q R GTGLGL +++ +V A G+ Sbjct: 554 GGARKVHFRVQDTGIGILPVNLERIFEYFSQGETLLHRRFPGTGLGLSISRHLVRAMGGE 613 Query: 792 FYIFSTPAKGTL 803 + S P G++ Sbjct: 614 ILVASEPGAGSV 625 >gi|70730352|ref|YP_260091.1| sensory box sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] gi|68344651|gb|AAY92257.1| sensory box sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] Length = 1059 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 79/250 (31%), Positives = 134/250 (53%), Gaps = 8/250 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DISE K + ++ +++ AE+ + KS+FL +SHEIRTPL AIIG + + + Sbjct: 444 VLQDISERKAVEAQIQQSRQDAERATQAKSEFLDCMSHEIRTPLNAIIGMAHLALDLPLE 503 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P+ +Y IDR+ ++ +N +LD+SKIE+GK+++ L E V + + LV+ Sbjct: 504 PVQR----DYIEKIDRAAKHLVGTINGVLDLSKIEAGKLSMEQVGFDLRELVDDVLLLVR 559 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSN 734 A EK + ++ ++P R + D + Q+ N++ NAI FT +G I + + Sbjct: 560 QRAEEKALRLQLDIPASLPHRYVGDPLRLAQVLTNLVDNAIKFTEAGHVCIGVYLVRQWD 619 Query: 735 EEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + +L V DTGVG+++ + + F Q S R G+GLGL ++K +V G Sbjct: 620 HQALLCFSVTDTGVGISDEQQARLFNVFVQADRSISRRYGGSGLGLTISKKIVQLMQGDI 679 Query: 793 YIFSTPAKGT 802 + S P +G Sbjct: 680 RVKSQPGQGA 689 >gi|237727119|ref|ZP_04557600.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229433975|gb|EEO44052.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1467 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 124/236 (52%), Gaps = 6/236 (2%) Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIG-FSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 I +K S K F +SHE+RTPLT I G E+ + ++ G ++Y + ++++ Sbjct: 932 IEQKLSELKIKFFTNISHELRTPLTLIQGPIQELKEKEKLSQKG----MQYVDLMEKNTK 987 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L +VN +LD KI++GKM LH +L+E V ++ A E + A Sbjct: 988 QMLQLVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDI 1047 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELE 754 + AD V + NI+SNA FTP+GG I ++ + +++ +RV D+GVG+ +L Sbjct: 1048 MVWADKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDDDKHCYVRVEDSGVGIPQSKLS 1107 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + F Q N++ +GTG+GL L+K ++ + G+ Y S KG + I L Sbjct: 1108 EIFERFSQADNARGAYYQGTGIGLALSKEIISLHHGEIYAESPEGKGAVFTIELQL 1163 >gi|152983945|ref|YP_001349761.1| virulence sensor protein BvgS [Pseudomonas aeruginosa PA7] gi|150959103|gb|ABR81128.1| virulence sensor protein BvgS [Pseudomonas aeruginosa PA7] Length = 948 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 84/248 (33%), Positives = 135/248 (54%), Gaps = 8/248 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPLGNPRYIEYANYID 631 A++ AE + KS FL+ +SHE+RTPL+A+IG E+ ++ G L + A Sbjct: 567 QAEQKAEAANQAKSIFLSTMSHELRTPLSAVIGLQELALRQADQGVLDKESLV--AAQTA 624 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 G L+L + ++LD+S+IESGK++ + V+L + E LV A +K++ + T F Sbjct: 625 AQGLLLL--IGNVLDLSRIESGKIDSTPKAVALKALMEEIAGLVDGLARQKQLTLTTEFH 682 Query: 692 NNI-PRILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNE-EVILRVRDTGVGM 748 + P + D +KQI N+LSNAI FT GG + +S T S V L V DTG+G+ Sbjct: 683 GEVDPWVTVDPLHLKQITFNLLSNAIKFTERGGVTMRVSGTRRSQHLHVQLDVIDTGIGV 742 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + K +PF Q+ ++Q + G+GLGL + + +V+ G + S P KG+ + Sbjct: 743 SAEDSAKLFQPFAQVESAQAGQAHGSGLGLNITRRLVEHMGGHIALQSEPGKGSHFSVTL 802 Query: 809 PLYDTSHP 816 L + P Sbjct: 803 ELPLAAPP 810 >gi|302384308|ref|YP_003820131.1| histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302194936|gb|ADL02508.1| histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 694 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 120/226 (53%), Gaps = 6/226 (2%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE ++ KS FLA +SHE+RTPL II +E++++ + + R E A I SG+ + Sbjct: 310 AETANAAKSQFLANMSHELRTPLNGIIAMTELLRDHQT----DSRGREMAATIISSGHTL 365 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 +VND+LD++KIE+G + P LD+ + A L A K I +R + ++ + Sbjct: 366 EYVVNDILDVAKIEAGLLQFEAAPFDLDDLLKAATQLHGAAAAAKGITLRLTIHDDASGV 425 Query: 698 L-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 D V Q+ N++SNA+ FT +GG + + H + E+ L V DTGVG + Sbjct: 426 YRGDRTRVSQVISNLISNAVKFTETGGVQVTARRH-GDRELCLSVSDTGVGFDRATAARL 484 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + F Q S R GTGLGL + ++ + G+ + S P KG+ Sbjct: 485 FQRFEQADVSVSRRYGGTGLGLAICASLTEIMGGRVTVRSVPGKGS 530 >gi|129306893|gb|ABO30409.1| GacS [Pseudomonas sp. K93.2] gi|129306897|gb|ABO30411.1| GacS [Pseudomonas sp. K94.37] gi|129306899|gb|ABO30412.1| GacS [Pseudomonas sp. P12] gi|129306907|gb|ABO30416.1| GacS [Pseudomonas sp. Q37-87] Length = 204 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 125/206 (60%), Gaps = 8/206 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y I++S + +L I+N++ Sbjct: 3 KSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQLDYLGTIEKSADSLLGIINEI 58 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRTSFANNIPRILADLRS 703 LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ + + ++ D Sbjct: 59 LDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLSLVGDPLR 118 Query: 704 VKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 +KQI N++SNAI FT G + ++ H + ++ + ++DTG+G++N ++ + F Sbjct: 119 LKQILTNLVSNAIKFTREGTIVARAMLEDEHEDSVQLRISIQDTGIGLSNQDVRALFQAF 178 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVD 786 Q NS + GTGLGL ++K +V+ Sbjct: 179 SQADNSLSRQPGGTGLGLVISKRLVE 204 >gi|288959555|ref|YP_003449896.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288911863|dbj|BAI73352.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1284 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 100/376 (26%), Positives = 176/376 (46%), Gaps = 22/376 (5%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L +ILE + G++I +G I N ++L G P ED + + L + Sbjct: 437 RLRTILEQSPVGVSIGRADGTIAFANARAAELAGQPQEDFVGSRHALALPGTSGDPAGDE 496 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSL----RIIIKKLPFSSCYSLTMHDISEWKQEK 568 + S + ++ + ++ +L R + P +S +DI+ K + Sbjct: 497 GRDADSGGVLVREAELAVDRPDGSRVWALQTLQRTSFEGEPAVLAWS---YDITARKLAE 553 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 L AK+ AE + K++FLA +SHEIRTP+ ++G E++ PL + + Sbjct: 554 EALRAAKEQAEIAARSKAEFLATMSHEIRTPMNGVLGMLELMA---LTPLDEEQRTLVST 610 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRIL 685 D SG +L I++D+LD+SKIE+GK+ L P L E V++ L+ A++K + Sbjct: 611 MRD-SGAALLRIIDDILDLSKIEAGKLELEELDLSPADLVEGVAD---LLAPQAHQKGLA 666 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR---- 740 + ++P R+ D ++QI N+ NAI FT G ++ + + ++R Sbjct: 667 LICDIDGSVPERLRGDSGRLRQILFNLTGNAIKFTDRGRVVLRVQAAATADPTLIRLTVA 726 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D+G+G+ + +PF Q +S R GTGLGL + +V+ G+ + S P + Sbjct: 727 VEDSGIGIGPEGQARLFQPFSQADSSTTRRFGGTGLGLAICTRLVERMGGRIGVESVPGR 786 Query: 801 GTLIEIIFPLYDTSHP 816 G++ L P Sbjct: 787 GSIFRFTVELARPPEP 802 >gi|239997215|ref|ZP_04717739.1| GAF sensor hybrid histidine kinase [Alteromonas macleodii ATCC 27126] Length = 702 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/259 (32%), Positives = 131/259 (50%), Gaps = 10/259 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI++ +K L +AE +S+FLA +SHEIRTP+ + G E + + Sbjct: 285 DITQLHMDKAMLQQKTDMAESALKARSEFLANMSHEIRTPIHGVQGMLEALISSSL---- 340 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N +E+A +S + +L+IVND+LD SKI+SG M+ P +L + + E + + A Sbjct: 341 NSTQLEHATIAMKSADSLLNIVNDILDFSKIDSGNMSFEESPTNLADTIEEQVPMFTRLA 400 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +EK I + S + +AD + QI +N+L+NAI FT G++ + T T + Sbjct: 401 HEKGIELSVSTKGVEGKTFIADKLRIGQILINLLNNAIKFTKE-GKVTVETKSTRYGKGR 459 Query: 739 LRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 RV+ D+G+G++ + + PF Q NS Q R GTGLGL + +V GK + Sbjct: 460 FRVKLIVTDSGIGISEQQQKLIFSPFVQAENSTQRRYGGTGLGLSIVSQIVKHYGGKIEV 519 Query: 795 FSTPAKGTLIEIIFPLYDT 813 S G + L D Sbjct: 520 CSDLGVGARFIVTLMLDDA 538 >gi|237710730|ref|ZP_04541211.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|229455452|gb|EEO61173.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] Length = 1467 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 124/236 (52%), Gaps = 6/236 (2%) Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIG-FSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 I +K S K F +SHE+RTPLT I G E+ + ++ G ++Y + ++++ Sbjct: 932 IEQKLSELKIKFFTNISHELRTPLTLIQGPIQELKEKEKLSQKG----MQYVDLMEKNTK 987 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L +VN +LD KI++GKM LH +L+E V ++ A E + A Sbjct: 988 QMLQLVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDI 1047 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELE 754 + AD V + NI+SNA FTP+GG I ++ + +++ +RV D+GVG+ +L Sbjct: 1048 MVWADKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDDDKHCYVRVEDSGVGIPQSKLS 1107 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + F Q N++ +GTG+GL L+K ++ + G+ Y S KG + I L Sbjct: 1108 EIFERFSQADNARGAYYQGTGIGLALSKEIISLHHGEIYAESPEGKGAVFTIELQL 1163 >gi|51594666|ref|YP_068857.1| two-component sensor/regulator [Yersinia pseudotuberculosis IP 32953] gi|186893669|ref|YP_001870781.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis PB1/+] gi|51587948|emb|CAH19551.1| two-component sensor/regulator [Yersinia pseudotuberculosis IP 32953] gi|186696695|gb|ACC87324.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis PB1/+] Length = 939 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 79/239 (33%), Positives = 120/239 (50%), Gaps = 11/239 (4%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ + KSD L +SHEIRTPL +G E+++N G R E A+ S +L Sbjct: 392 EQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDA-GQMRLAETAHQCSLS---LL 447 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 I+N+LLD S+IESG+M L E +L + +A+ + A K + + T + +IP L Sbjct: 448 AIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISADIPLEL 507 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D ++QI +N+L NA+ FTP G I N+ + V DTG G+ + Sbjct: 508 ELDTLRLRQILVNLLGNAVKFTPQGR--IQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIF 565 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 +PF Q + +Q GTGLGL +A + G +FS P +G+ + P + P Sbjct: 566 QPFMQTSDHEQ----GTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPP 620 >gi|163793573|ref|ZP_02187548.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159181375|gb|EDP65890.1| Signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 950 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 86/257 (33%), Positives = 136/257 (52%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K + +++ A AE SS KS+FLA +SHE+RTPL A+IGF++++K + FGPLG Sbjct: 693 DITELKHREMEITQAMISAESASSAKSEFLANMSHELRTPLNAVIGFADLMKQELFGPLG 752 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + Y EY I SG+ +L ++ +LD S+ E + +L++ V + + A Sbjct: 753 HDHYREYVEDIIGSGSKLLSMIEVILDFSRSEQVGQSDSDARCALNDVVGAVVRDLSPIA 812 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 +K I + +P + D + QI N+LSNAI F+ G I + T ++ + Sbjct: 813 LQKNIDVSVDRDETLPPLNVDGAILYQILQNLLSNAIKFSNPGAPIGLRTFRAADGSAGM 872 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V D GVG+ + ++K +PF Q +G GLGL + K+ DA G+ S Sbjct: 873 SVTDHGVGIPDELIDKVTQPFWQRQGPLVRDHDGVGLGLAIVKSHTDALGGELKFDSQVG 932 Query: 800 KGTLIEIIFPLYDTSHP 816 +GT + I+ P T P Sbjct: 933 RGTTVTILLPASRTIRP 949 >gi|186683734|ref|YP_001866930.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186466186|gb|ACC81987.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1039 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 79/268 (29%), Positives = 135/268 (50%), Gaps = 20/268 (7%) Query: 554 YSLTMHDISEWKQEKNKL----SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 + L + D + +QE+ +L A+ AE + K +FLA +SHE+RTPL AI+G++++ Sbjct: 628 FMLDITDRKQAEQEREQLLEREKAARADAESANRMKDEFLATLSHELRTPLNAILGWTQL 687 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 ++N++F R +E I+R+ + ++ D+LD+S+I G ++L + L V Sbjct: 688 LRNRKFDEATTARALET---IERNTKSLAQLIEDVLDVSRIIRGTLHLSIHRIKLVPLVE 744 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 AI V+ A K I I+ F + ++ D ++Q+ N+LSNA+ FT GG + + Sbjct: 745 AAIDTVRPAAEAKEINIKCKFDPEVGIVVGDTNRLQQVVWNLLSNAVKFTSKGGSVDVQL 804 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD--- 786 + V +RV DTGVG+ L + F Q +S G GLGL + + +V+ Sbjct: 805 ERIES-SVQIRVSDTGVGIAAEFLPHVFERFRQADSSSTRSHGGLGLGLAIVRHLVELHG 863 Query: 787 ---------ANMGKFYIFSTPAKGTLIE 805 G +I + P K +E Sbjct: 864 GTVSVESLGVGQGATFIVNLPMKAVYVE 891 >gi|315029161|gb|EFT41093.1| PAS domain S-box [Enterococcus faecalis TX4000] Length = 609 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 97/370 (26%), Positives = 175/370 (47%), Gaps = 31/370 (8%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 ME E L S+L +DG+ +R G +++ N L E+++ L+ Sbjct: 254 MEAERNHLDSVLTHMTDGVIATDRRGKVITINEMALSLLNVKNENVIGTSLLELLDIEED 313 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYSLTMHDIS 562 + L E L + ++ S +EE + +R+ I ++ F + +HD++ Sbjct: 314 YTLRKLLEEPDELLIDRST------SDREEDQMIIRVDFTMIRRESGFITGLVCVLHDVT 367 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E QEKN E+E + +F++ VSHE+RTPLT++ + E + G NP Sbjct: 368 E--QEKN---------ERE---RREFVSNVSHELRTPLTSMRSYIEALSE---GAWENPE 410 Query: 623 YI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN- 680 + + ++ ++NDLL++S+++SG +L E V+ +E ++ + + Sbjct: 411 IAPNFLKVTLEETDRMIRMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIEN 470 Query: 681 -EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 +K IR F + D V Q+ NIL+NAI ++P GG I T N V+ Sbjct: 471 EQKNYKIRREFTKRDLWVELDTDKVIQVLDNILNNAIKYSPDGGVITCRLVETHNN-VVF 529 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 + D G+G+ +L K + F ++ ++ GTGLGL ++K ++ A+ G ++ ST Sbjct: 530 SISDQGLGIPKKDLGKVFERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEG 589 Query: 800 KGTLIEIIFP 809 +G+ I P Sbjct: 590 EGSTFYISLP 599 >gi|76817983|ref|YP_336784.1| two-component system sensor protein [Burkholderia pseudomallei 1710b] gi|76582456|gb|ABA51930.1| two-component system sensor protein [Burkholderia pseudomallei 1710b] Length = 988 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 86/264 (32%), Positives = 132/264 (50%), Gaps = 10/264 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DIS K+ + KL A+ A++ + KS FLA +SHEIRTPL AIIG E+++ Sbjct: 479 TLLDISLRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRS--- 535 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + E + ++ N +L I+ND+LD+SK+ESG+M L P + + E + Sbjct: 536 PLSEQQS-ERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYA 594 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII----STTH 731 A K + + +S + R D ++Q+ N++ NAI FT G I I + Sbjct: 595 PLAESKGLALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTER-GHISIDVHRAKAA 653 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + V DTG+G+ + + Q S R G+GLGLPL + +V G Sbjct: 654 RDGSAIEIWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGS 713 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSH 815 I S P GT + + PL + H Sbjct: 714 IEIDSLPDFGTTVTVALPLREARH 737 >gi|284920828|emb|CBG33891.1| Two-component sensor kinase and response regulator [Escherichia coli 042] Length = 904 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 132/250 (52%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TEIADDVPTALMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G STP G+ + Sbjct: 593 GIDPTKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGVLSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|158334365|ref|YP_001515537.1| serine/threonine protein kinase and signal transduction histidine kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris marina MBIC11017] gi|158304606|gb|ABW26223.1| serine/threonine protein kinase and signal transduction histidine kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris marina MBIC11017] Length = 3073 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 142/238 (59%), Gaps = 8/238 (3%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 + ++ +K+ A+ + KS FLA +SHE+RTPL I+G++++++ R L N + +E + Sbjct: 2594 SAMAESKEKADAANEAKSLFLANMSHELRTPLNGILGYAQILR--RSESLSN-KELEGVD 2650 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I + G+ +L+++ND+LDISKIE+ K+ L + +L + + + ++ A++K I Sbjct: 2651 TIYQCGSHLLNLINDILDISKIEALKLELTPKAANLPYLLQTVVEMCKVKADQKGIQFNY 2710 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDT 744 ++ +P ++ D + ++Q+ LN+L NA+ FT G I+ + S ++V + RV DT Sbjct: 2711 QPSSQLPQQVEVDDKRLQQVLLNLLGNAVKFTDHGSVTFIVDVSPLSEQQVSISFRVIDT 2770 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GVG+ +L K + F Q+ Q + EGTGLGL +++ +V + ++ S P +G+ Sbjct: 2771 GVGIAEQDLVKLFQSFKQV-GDQHKQAEGTGLGLAISQRIVRLMGSEIHVTSQPQQGS 2827 >gi|327439250|dbj|BAK15615.1| signal transduction histidine kinase [Solibacillus silvestris StLB046] Length = 512 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 100/366 (27%), Positives = 173/366 (47%), Gaps = 24/366 (6%) Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPS 507 IE +L +++E + +I+REG I N+ LF P E ++ F + L + Sbjct: 169 IEEERLKTLIENMGSALMMIDREGNISIVNKKFQTLFELPKEKLIGNNFMMLGLPKELEK 228 Query: 508 VMNH-YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566 ++H +LTE L RQ LE E++ ++ + + + MHD+SE Sbjct: 229 FIDHVFLTE---LPYRQQLEMEIANEVYYEQVYGAPVVGEHGRWLGVV-IVMHDVSELV- 283 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 +L +K DF+A VSHE+RTP+T+I GFSE + + F + + Sbjct: 284 ---RLEQIRK----------DFVANVSHELRTPITSIKGFSETLLDGAFND--EQMLLSF 328 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I N + +VNDLL++SKIE L P L + + + L K + Sbjct: 329 LTIIHDESNRIQVLVNDLLELSKIERHGFTLDVVPTKLQDILVRVVDLTSAQLENKNMQF 388 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 + IL D+ + QI N+++NAI ++ + + + +++ I V+D G+ Sbjct: 389 DVEIEQD-AVILGDVNRLMQIFTNLINNAIAYSKEETTVTLRIS-ANDQYGIFEVKDEGI 446 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ E+ + + F ++ ++ GTGLGL + K +++A+ GK + S KGT I++ Sbjct: 447 GIEKAEISRIFERFYRVDRARSRNSGGTGLGLSIVKHLIEAHNGKIIVQSEVGKGTSIKV 506 Query: 807 IFPLYD 812 PL D Sbjct: 507 YLPLKD 512 >gi|239926895|ref|ZP_04683848.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis ATCC 14672] gi|291435241|ref|ZP_06574631.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis ATCC 14672] gi|291338136|gb|EFE65092.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis ATCC 14672] Length = 1385 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/261 (31%), Positives = 139/261 (53%), Gaps = 7/261 (2%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+ + + + A+++AE + + K+ F + +SHE RTPLT I+G E ++ Q G + Sbjct: 331 IASARSYEAQQRRAEELAELDRA-KTTFFSNISHEFRTPLTLIMGPVEELRTQLAG--AD 387 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 R E I R+G + +VN LLD S+IE+G+M +EPV L + ++ S+ + + Sbjct: 388 ARVREELEIIHRNGLRLGKLVNSLLDFSRIEAGRMQARYEPVDLSQVTADLASVFRSAVD 447 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + + R ++ D +++ LN+LSNA+ FT G I T +E ++ Sbjct: 448 KAGLDFRIDCPPLQEQVYVDRGMWEKVILNLLSNALKFTFDGS--IGVTVRARDEHAVIT 505 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+G++ E+ + + F +I N++ EG+G+GL L K +V + G ST + Sbjct: 506 VTDTGIGVSREEMPRLFERFHRIENARSRSNEGSGIGLALVKELVGLHGGTITADSTEGE 565 Query: 801 GTLIEIIFPLYDTSH-PHDCI 820 GT I P + T+H P D + Sbjct: 566 GTRFTIRLP-FGTAHLPSDAL 585 >gi|329851989|ref|ZP_08266670.1| mmoS [Asticcacaulis biprosthecum C19] gi|328839838|gb|EGF89411.1| mmoS [Asticcacaulis biprosthecum C19] Length = 1042 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 138/254 (54%), Gaps = 6/254 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DIS ++ KL A AE ++ K+DF+A +SHEIRTPLT +IGFS ++ ++ Sbjct: 645 VVRDISSQVTQEQKLEAATDAAEAAAAAKADFMANMSHEIRTPLTVMIGFSSLLTERQDM 704 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P + YA I + N +L +VND+LD SK+E+G++ L +P + E E ++Q Sbjct: 705 P---DDALRYAQRIATASNSLLSLVNDILDFSKLEAGQLELKPKPTEIVEMSRELFLMMQ 761 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A K + +R N++P + D ++ +Q+ LN++ NAI FT +G ++ N+ Sbjct: 762 AQAAAKGLNLRFEDDNSVPDTVFLDPQAYRQVLLNLVGNAIKFTDTGSVTLM--LGYDNK 819 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RV DTG GM K + F Q+ S + GTGLGL + + +V+A G + Sbjct: 820 HLTVRVIDTGPGMNEAGQAKLFQRFSQVDGSSTRKHGGTGLGLAICRGLVEAMGGTIGVT 879 Query: 796 STPAKGTLIEIIFP 809 S P +G+ P Sbjct: 880 SAPGEGSHFHFTLP 893 >gi|229524439|ref|ZP_04413844.1| BarA sensory histidine kinase [Vibrio cholerae bv. albensis VL426] gi|229338020|gb|EEO03037.1| BarA sensory histidine kinase [Vibrio cholerae bv. albensis VL426] Length = 927 Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/252 (32%), Positives = 135/252 (53%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQA-DYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L I+ND+LD SK+E+GK+ L P E + E ++L A+EK + I Sbjct: 331 TIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITL 390 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDT 744 IPR ++ D ++Q+ N++ N+I FT G + ++VI VRDT Sbjct: 391 KIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDT 450 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S GTGLGL + + +V G+ + S +G+ Sbjct: 451 GIGISERQQAQLFQAFSQADASISRCYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTF 510 Query: 805 EIIFPLYDTSHP 816 L+ T P Sbjct: 511 WFTLRLHTTELP 522 >gi|332702191|ref|ZP_08422279.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552340|gb|EGJ49384.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 960 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/266 (28%), Positives = 135/266 (50%), Gaps = 5/266 (1%) Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 K P + DI+E K ++ L A AE + K +FLA +SHEIRTP++ I+G Sbjct: 555 KSYPAGNLVYAAARDITERKDLEDALRKAMSQAEAANQAKGEFLANMSHEIRTPMSGIMG 614 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 +++ + P R++E I S ++ IVND+LD SK+E+G++ + E + Sbjct: 615 LMDMLLDGEATP-AQRRHLEL---IRGSARTLMSIVNDILDFSKVEAGQLTIDREAFAPR 670 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724 + E + A +K + + + +P +++D R + QI N++ NA+ FT G Sbjct: 671 TLIEEVCGRFEYMAEQKELRLTCAVDEAVPANLVSDPRRLSQIMTNLVGNALKFTQQGEV 730 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + T+++ + L V D+G G+ +L + + F Q+ +S + GTGLGL + K + Sbjct: 731 SVRLRADTTDKLLTLSVSDSGSGIPKDKLTRLFQRFSQLDSSPAKKAAGTGLGLAICKGL 790 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810 V A G + S G++ + P+ Sbjct: 791 VQALGGDIRVESELGAGSVFTVRIPM 816 >gi|294505985|ref|YP_003570043.1| redox sensing protein [Salinibacter ruber M8] gi|294342313|emb|CBH23091.1| Putative redox sensing protein [Salinibacter ruber M8] Length = 1668 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 122/241 (50%), Gaps = 16/241 (6%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP----------LGNPRYIEYANYID 631 S KS FLA +SHEIRTPLT+I+GF+E I + G L P ++A I+ Sbjct: 1420 SQAKSVFLANMSHEIRTPLTSILGFAEAIGEEVGGDNQTGKTDRSDLDLPALRQFAALIE 1479 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR---ILIRT 688 SG +++ + +L++SK+E+G+MNL EPV L +EA VQ +A + R + + Sbjct: 1480 SSGERLMNTLTGVLNLSKLEAGEMNLAPEPVDL---AAEAEKAVQEFAPQARDAGVDLAA 1536 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + AD V+ + N+LSNA+ +T GG + +S ++ +L V DTG+GM Sbjct: 1537 EGGQDAVWARADEGGVQIVLRNLLSNAVKYTGEGGTVRVSARTDGKQDAVLEVVDTGIGM 1596 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +E +PF Q EGTGLGL + + G + + +GT + Sbjct: 1597 DPARVEDLFEPFRQESEGLAREYEGTGLGLAVTWKALQQMEGSVEVETAKEEGTCFTVRL 1656 Query: 809 P 809 P Sbjct: 1657 P 1657 >gi|288941103|ref|YP_003443343.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288896475|gb|ADC62311.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1370 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 102/408 (25%), Positives = 198/408 (48%), Gaps = 39/408 (9%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R ++++++ L +++ + D + + + +G+ L+ N +L+G I+ K F Sbjct: 472 RASQQRLQDNRELLRTLIRSIPDLVWLKDTQGVYLTCNARFERLYGASESQIIGKTDYDF 531 Query: 501 LEQNTPSVM-NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--- 556 + + + L I + R E++T +L+ +IK + + +L Sbjct: 532 VPRTLADFFRTNDLAAIAAGGPRSNEEELTFAGDGHRELVQ---VIKAPVYDTRGTLIGV 588 Query: 557 --TMHDISEWKQEKNKLSHAKK-----IAEKESS-------------HKSDFLARVSHEI 596 DI++ K+ + +L+ ++ +AE+ + KS+FLA +SHEI Sbjct: 589 LGIGRDITQLKRAEAELALHRRHLEELVAERTAELTAARAEAERLARAKSEFLANMSHEI 648 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTP+ A++G + +++ + E I +G +L I+ND+LD SKIESG + Sbjct: 649 RTPMNAVLGLAYLLERMDLPDAAH----ELTRKIHLAGRNLLGILNDILDFSKIESGHIE 704 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEK--RILIRTSFANNIPRILADLRSVKQIALNILSN 714 + P LDE + +++ + A +K ++IR + +L D + Q+ +N+ SN Sbjct: 705 IERAPFQLDEVLDGLATIMTVTAGDKPLELVIRPPDCLDCT-LLGDALRLSQVLINLTSN 763 Query: 715 AIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 A+ FT SG ++ + + E+ +R VRDTG+G+ + +PF Q S R Sbjct: 764 AVKFTASGSVEVGVDLLERTASEIRVRFSVRDTGIGIDEATQSRLFQPFAQADASTTRRF 823 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSHPH 817 G+GLGL +++ +V+ G+ + S P +G+ E+ F + DT+ H Sbjct: 824 GGSGLGLVISRRLVELMGGRLELDSRPGEGSTFRFELRFEVLDTASSH 871 >gi|206890531|ref|YP_002249149.1| two-component system sensory histidine kinase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742469|gb|ACI21526.1| two-component system sensory histidine kinase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 890 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/247 (30%), Positives = 129/247 (52%), Gaps = 8/247 (3%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A K ++ + KS F+A +SHE+RTP+ AIIG+++++ ++ GPL + + Sbjct: 287 LQKANKQLKELDTLKSAFIANMSHELRTPMNAIIGYTDLLLDEVDGPLNDDQKTSLKKVA 346 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + +L L ++ND+LDISKIESGK+ LH + L E + + + +K + + Sbjct: 347 ANARHL-LQLINDVLDISKIESGKIELHPREIDLKELIDGIMVTFEPLIAKKGLSFTLNI 405 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-------SNEEVILRVRD 743 + ++ D KQI +N++SNA+ FT GG I + S + + + V D Sbjct: 406 ESGAEKLYVDEDKTKQILINLISNAVKFTHQGGITIKAKVSERGKAKDGSPQFIEISVSD 465 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ +L+K F Q S + EGTGLGL + + +V + G + S KG+ Sbjct: 466 TGIGIKREDLDKIFDKFAQADVSTTRQYEGTGLGLSIVRGLVALHKGMVWAESEVGKGST 525 Query: 804 IEIIFPL 810 ++ P Sbjct: 526 FYVLLPF 532 >gi|162449087|ref|YP_001611454.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161159669|emb|CAN90974.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 859 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 2/250 (0%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K+ + +L AK+ A+ + K +FL +SHE+RTPL+ I+G E + + R PL Sbjct: 167 DITERKRMEIELQKAKEAADAAACAKGEFLTVMSHELRTPLSLILGPLESLLSSRDEPL- 225 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +PR I RSG + +V+D+LD KIE+GKM + +E V + E VS+ + + A Sbjct: 226 SPRVRADLELIQRSGRRLRRLVDDVLDHQKIEAGKMQIDWEAVDVGELVSDMVEEARPAA 285 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + + + R+ AD R +++IALN+L NA+ FTP GG++ + + L Sbjct: 286 ARGGLDLSIRVDPELRRVPADRRKLEKIALNLLGNALKFTPPGGRVTVD-LRALDGLFEL 344 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG G+ + F QI S + EGTG+GL LAK + + G + S P Sbjct: 345 SVEDTGPGIPADRRHLLFQRFQQIDASATRKHEGTGIGLSLAKELTELMGGAVGVESEPG 404 Query: 800 KGTLIEIIFP 809 G+ + P Sbjct: 405 VGSRFFVRLP 414 Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 66/266 (24%), Positives = 126/266 (47%), Gaps = 23/266 (8%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 + + +SE +QE L A K+A + +A +SHE+ P++AI+ ++++ + Sbjct: 606 AAALEQLSEAQQE---LLQAGKMAAIGT-----LVAGLSHEMNNPVSAILMNAQLLLRRH 657 Query: 615 FGPLGNP---RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 G P ++ I+R D+V LL+ ++ GK + EP + A+ A Sbjct: 658 RKGHGLPDEASLLKALGTIERQAIRCSDLVTALLEYAR---GK-PIGREPCDVRAALRRA 713 Query: 672 ISLVQLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + L A E+R+ + T ++ +P +L + ++ LN++ NA+ +P G +++ Sbjct: 714 VDLSAPRARERRVHLETDGNSSALPEVLVNASQLESALLNVIGNALDASPHGSAVVVEAR 773 Query: 731 HTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + V + V D G G+ +L + +PF + + G+GTGLGL L ++ Sbjct: 774 PRPRGDIHGVEIDVHDHGCGIRAEDLSRIFEPF----FTTKPPGQGTGLGLSLTHRFIEE 829 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDT 813 + G I S P +GT + + P T Sbjct: 830 HQGSIRIESAPGEGTTVRMWLPARQT 855 >gi|134094133|ref|YP_001099208.1| putative response regulator receiver [Herminiimonas arsenicoxydans] gi|133738036|emb|CAL61081.1| putative two-component sensor protein histidine kinase [Herminiimonas arsenicoxydans] Length = 560 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 84/238 (35%), Positives = 129/238 (54%), Gaps = 12/238 (5%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 LS AK AE + KS+FLA +SHEIRTP+ ++G ++ Q + Y+E A Y Sbjct: 175 LSLAKNEAEAANRAKSEFLAVMSHEIRTPMNGMLGMMQLALAQA-SDVEQREYLETAQY- 232 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD--EAVSEAISLVQLYANEKRILIRT 688 S +L I+ND+LD SK+ESG +L FE V+ D +AV I L+ + + Sbjct: 233 --SAEALLTILNDILDFSKLESG--HLEFEAVTFDLPKAVDSVIELMSARMQGAALSLNA 288 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDT 744 ++PR+L D+ ++Q+ LN++ NA+ FT G + I S ++ LR V D+ Sbjct: 289 ECDADLPRLLTGDVGRLRQVLLNLIGNALKFTEQGSVTLKIERLPASGTQIPLRFTVIDS 348 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G+T E + + F Q +S R GTGLGL + K +V+ G + STP +G+ Sbjct: 349 GIGITAEEQTRLFQSFSQADHSISRRFGGTGLGLSICKKIVEMQRGCIGVESTPGEGS 406 >gi|83814131|ref|YP_444239.1| sensory box histidine kinase/response regulator [Salinibacter ruber DSM 13855] gi|83755525|gb|ABC43638.1| sensory box histidine kinase/response regulator [Salinibacter ruber DSM 13855] Length = 712 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 127/247 (51%), Gaps = 4/247 (1%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ + + A+ AE+ + KS FLA +SHEIRTPLT+IIGF+E + ++ G GN Sbjct: 449 EAERARTEAEVARDQAEEAARLKSAFLANMSHEIRTPLTSIIGFAEALGDE-VGD-GNGN 506 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +A I+RSG +LD ++ +L++SK+E+G+M L EPV L A ++ A EK Sbjct: 507 TGRFAGLIERSGRRLLDTLDGVLNLSKLEAGQMGLETEPVDLVTKARRAAEELRPQATEK 566 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + + AD SV+ + N++SNAI +T GG + N +L V Sbjct: 567 GLGLTVETGRPEVWARADAGSVQIVLQNLVSNAIKYTEEGG--VHVRVFRENGWAVLEVE 624 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+GM + KPF Q EG+G+GL + + + G+ + + G+ Sbjct: 625 DTGIGMDPALADDLFKPFRQASEGLGRAYEGSGVGLAVTQKATEEMGGQVDVETEAGAGS 684 Query: 803 LIEIIFP 809 + P Sbjct: 685 CFTVRLP 691 >gi|329132040|gb|AEB77981.1| GacS [Pseudomonas sp. S8-151] Length = 203 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 124/205 (60%), Gaps = 8/205 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y I++S + +L I+N++ Sbjct: 3 KSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQLDYLGTIEKSADSLLGIINEI 58 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRTSFANNIPRILADLRS 703 LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ + + ++ D Sbjct: 59 LDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLSLVGDPLR 118 Query: 704 VKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 +KQI N++SNAI FT G + ++ H + ++ + ++DTG+G++N ++ + F Sbjct: 119 LKQILTNLVSNAIKFTREGTIVARAMLEDEHEDSVQLRISIQDTGIGLSNQDVRALFQAF 178 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMV 785 Q NS + GTGLGL ++K +V Sbjct: 179 SQADNSLSRQPGGTGLGLVISKRLV 203 >gi|152992982|ref|YP_001358703.1| hypothetical protein SUN_1395 [Sulfurovum sp. NBC37-1] gi|151424843|dbj|BAF72346.1| hypothetical protein [Sulfurovum sp. NBC37-1] Length = 645 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 127/243 (52%), Gaps = 15/243 (6%) Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS+F + V H+IRTP+ A++GF +++K + +P+ +EY +S +V+ ++ND Sbjct: 165 RKSEFFSSVIHDIRTPMNAVLGFLDLLKEEV-----DPKQVEYVQSAHKSAEMVIALIND 219 Query: 644 LLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-- 698 +LD +KI SGK+ + +F PV + + L A KRI NIP ++ Sbjct: 220 VLDFNKISSGKLKIDLYYFSPV---KELENTALLFYHNALSKRIDFIIYVDPNIPYLIKS 276 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEEVILRVRDTGVGMTNYELEKAM 757 +R +KQI N++SNAI FTP GG + + + +E+I+ V+DTG+G+ + Sbjct: 277 GPIR-LKQIINNLISNAIKFTPEGGMVTLEMLYELDTDELIVNVKDTGIGIPEEAQKSIF 335 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 PF Q S + GTGLGL ++K + D G+ + S +GT + P Sbjct: 336 HPFQQASKSIAGKYGGTGLGLSISKKLADLLEGELHFDSKEGEGTTFTLTIPCNSIPGTP 395 Query: 818 DCI 820 CI Sbjct: 396 KCI 398 >gi|23012953|ref|ZP_00052923.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 666 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 82/276 (29%), Positives = 133/276 (48%), Gaps = 7/276 (2%) Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 ++K L + S + E K + L A+ AE+ + KS FLA + HEIRTPL + Sbjct: 109 LVKGLGDAFILSRVVRYAIERKMGEEVLREARDSAEQAARAKSVFLAMMGHEIRTPLNGV 168 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 +G + ++ +PR + + SG L+L +VND+LD S++++ M L EP Sbjct: 169 LGMARLLLETDL----DPRQKSFTETLVSSGELLLGLVNDILDFSRLDAEGMTLAVEPFD 224 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSG 722 + + V E ++ EK + + T F + R++A D ++QI N++ NAI FT G Sbjct: 225 VLDTVEEVRLVLTSRVAEKDLTLTTRFGTGVRRVVAGDRLRLRQILFNLVGNAIKFTDHG 284 Query: 723 GQIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 G I +LR ++DTG+G+ + F Q + R +G GLGL + Sbjct: 285 GIEISVEPLAVERGQVLRFLIKDTGIGIGPEIGARLFTEFWQGDSGAARRFDGAGLGLAI 344 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 K + D G+ S P +GT + PL + P Sbjct: 345 CKRLTDLMGGEIGYDSLPGQGTTFRVDLPLPPSEAP 380 >gi|226954327|ref|ZP_03824791.1| GacS-like sensor kinase protein [Acinetobacter sp. ATCC 27244] gi|226834905|gb|EEH67288.1| GacS-like sensor kinase protein [Acinetobacter sp. ATCC 27244] Length = 936 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 92/285 (32%), Positives = 155/285 (54%), Gaps = 26/285 (9%) Query: 526 EKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLS----------- 572 + I + ST E +LL I ++K+L FS L + + +E +E + + Sbjct: 219 QHIVVNSTGELRLLQRDIANVVKRLHFSF---LELKEHTEQTEEDLRRTLDTLEVQNITY 275 Query: 573 -HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 A+ A + KS FLA +SHE+RTPL +I GF ++ Q+ L N + + Y I Sbjct: 276 RQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLSNEQNL-YLQTIR 332 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 +S +L ++ND+LD SKI++GK+ L P L+EA+ + + ++ A +K I + +A Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINMAFYYA 392 Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--EVILR--VRDTGV 746 NIP+ ++ D KQI N++SNAI FTP G+II+ ++ + +L V+D+G+ Sbjct: 393 ENIPQHVVGDALRFKQILTNLISNAIKFTPD-GEIIVRVRMEDDDIGQCLLHFSVQDSGI 451 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 G++ + +K + F Q S + GTGLGL ++K +V G+ Sbjct: 452 GLSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMRGQ 496 >gi|170026131|ref|YP_001722636.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis YPIII] gi|169752665|gb|ACA70183.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis YPIII] Length = 939 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 79/239 (33%), Positives = 120/239 (50%), Gaps = 11/239 (4%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ + KSD L +SHEIRTPL +G E+++N G R E A+ S +L Sbjct: 392 EQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDA-GQMRLAETAHQCSLS---LL 447 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 I+N+LLD S+IESG+M L E +L + +A+ + A K + + T + +IP L Sbjct: 448 AIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISADIPLEL 507 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D ++QI +N+L NA+ FTP G I N+ + V DTG G+ + Sbjct: 508 ELDTLRLRQILVNLLGNAVKFTPQGR--IQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIF 565 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 +PF Q + +Q GTGLGL +A + G +FS P +G+ + P + P Sbjct: 566 QPFMQTSDHEQ----GTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPP 620 >gi|332971397|gb|EGK10355.1| sensor histidine kinase VicK [Desmospora sp. 8437] Length = 595 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 95/363 (26%), Positives = 174/363 (47%), Gaps = 24/363 (6%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E E +L S+L SDG+ +R+G ++ +NR + + D + L P Sbjct: 247 EEEKGRLQSVLANMSDGVIATDRKGKVIVSNRRAEGMLDKKIGD--GEEINQVLPLANPL 304 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567 V +TE +RQT + L + EE+L +++ + +S ++ + + + E Sbjct: 305 VFP--VTE-----MRQTF--LELDAQDEEELTVIKLTFTPVLRASREAVGLIVVLQDVTE 355 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + KL +K +F+A VSHE+RTPLT I + E + G + P Sbjct: 356 EEKLDRQRK----------EFVANVSHELRTPLTTIKSYLEALDEG--GAMEEPELASRF 403 Query: 628 NYIDRS-GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + R + +++DLL +S++++ K+ P+ L+ + +A +K I Sbjct: 404 MRVTRQEAERMTRLIHDLLQLSRLDAEKVRFRKAPLPLESVLVDAADRFAFQCRQKEIDF 463 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 + S ++PR+ AD + Q+ N+LSNA+ +TP G +I ++ S+ V + V D G+ Sbjct: 464 QLSLEEDLPRVYADRDQIDQVLDNLLSNAVKYTPEGKKISLTARKCSDGYVEVAVADRGI 523 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +LE+ + F ++ ++ GTGLGL +A+ +V A+ G + S KGT + Sbjct: 524 GIPKKDLERIFERFYRVDKARSRSLGGTGLGLSIAREIVRAHGGSIQLESNYGKGTTVRF 583 Query: 807 IFP 809 P Sbjct: 584 TLP 586 >gi|329576539|gb|EGG58046.1| sensor protein kinase WalK [Enterococcus faecalis TX1467] Length = 609 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 97/370 (26%), Positives = 176/370 (47%), Gaps = 31/370 (8%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 ME E +L S+L +DG+ +R G +++ N L E+++ L+ Sbjct: 254 MEAERNRLDSVLTHMTDGVIATDRRGKVITINEMALSLLNVKNENVIGTSLLELLDIEED 313 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYSLTMHDIS 562 + L E L + ++ S +EE + +R+ I ++ F + +HD++ Sbjct: 314 YTLRKLLEEPDELLIDRST------SDREEDQMIIRVDFTMIRRESGFITGLVCVLHDVT 367 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E QEKN E+E + +F++ VSHE+RTPLT++ + E + G NP Sbjct: 368 E--QEKN---------ERE---RREFVSNVSHELRTPLTSMRSYIEALSE---GAWENPE 410 Query: 623 YI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN- 680 + + ++ ++NDLL++S+++SG +L E V+ +E ++ + + Sbjct: 411 IAPNFLKVTLEETDRMIRMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIEN 470 Query: 681 -EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 +K IR F + D V Q+ NIL+NAI ++P GG I T N V+ Sbjct: 471 EQKNYKIRREFTKREFWVELDTDKVIQVLDNILNNAIKYSPDGGVITCRLVETHNN-VVF 529 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 + D G+G+ +L K + F ++ ++ GTGLGL ++K ++ A+ G ++ ST Sbjct: 530 SISDQGLGIPKKDLGKVFERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEG 589 Query: 800 KGTLIEIIFP 809 +G+ I P Sbjct: 590 EGSTFYISLP 599 >gi|309791212|ref|ZP_07685744.1| histidine kinase [Oscillochloris trichoides DG6] gi|308226774|gb|EFO80470.1| histidine kinase [Oscillochloris trichoides DG6] Length = 545 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 128/231 (55%), Gaps = 9/231 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP--RYIEYANYIDRSGNLVLDIVN 642 KS FLA +SHE+RTPL AI+G+++++K G N E+ + I +G + +++ Sbjct: 308 KSMFLANMSHELRTPLNAILGYAQLLK---MGVANNDPVSQQEFLDSILGAGRHLTSLIS 364 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702 ++LD SKIE GK+ L+ PV ++ + E +V ++ +R S I +L D Sbjct: 365 NVLDFSKIEQGKIELYMGPVDVEPLIREVADIVHPLVKQQHNELRISIEPEIGTMLTDGP 424 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFG 761 ++QI +N+LSNA FT +G IS + E+I V DTG+G++ L K +PF Sbjct: 425 KLRQILVNLLSNAAKFTEAG---TISLHVCAAAEMIEFAVIDTGIGISAEHLGKLFQPFS 481 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 Q+ +S R +GTGLGL L++ + A G+ + S +G+ ++ P D Sbjct: 482 QVDSSVTRRVDGTGLGLALSRQLCHAMGGEISVESAVGQGSTFRVVLPAGD 532 >gi|260777592|ref|ZP_05886485.1| sensor protein TorS [Vibrio coralliilyticus ATCC BAA-450] gi|260605605|gb|EEX31890.1| sensor protein TorS [Vibrio coralliilyticus ATCC BAA-450] Length = 958 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/248 (32%), Positives = 132/248 (53%), Gaps = 9/248 (3%) Query: 571 LSHAK--KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 L+HAK + AE+ S K+ FLA +SHEIRTP+ ++G + ++K N + + + Sbjct: 454 LNHAKARRQAEQASRAKTAFLATMSHEIRTPMNGVLGTARLLKETGL----NSKQGHFVD 509 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RSG +L I+ND+LD SKIE+G + + +L + V + L+ A EK I I T Sbjct: 510 VINRSGTTLLAILNDVLDYSKIEAGHLEIRPVDFNLFDMVKDVQQLLDGRAKEKNIEIST 569 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGV 746 +++ + L D+ + Q+ N++ NA+ FT G I ++ + +V+ V DTG+ Sbjct: 570 LIESDVSQFLYGDVTRISQVLTNLVGNAVKFTEQGHVDIYVTYDPGQDGQVLFEVSDTGI 629 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G++ E E F Q +G GTGLGL ++K +V+A G + S +G+ Sbjct: 630 GISQEEQETLFDAFTQASGGMSSKG-GTGLGLAISKRIVEAMGGFLQLESEVGQGSRFSF 688 Query: 807 IFPLYDTS 814 PL S Sbjct: 689 SVPLSQGS 696 >gi|148927534|ref|ZP_01811018.1| PAS/PAC sensor hybrid histidine kinase [candidate division TM7 genomosp. GTL1] gi|147887117|gb|EDK72601.1| PAS/PAC sensor hybrid histidine kinase [candidate division TM7 genomosp. GTL1] Length = 571 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 108/381 (28%), Positives = 191/381 (50%), Gaps = 15/381 (3%) Query: 432 GIEPE-DVDTRINKRKMEIEVMQLCSILEA-TSDGIAIINREGIILSTNRAVSKLFGYPV 489 GIE + V I +RK +E + + S++ + T+ G+ I + EG + N A ++ GY + Sbjct: 46 GIERQIGVMVDITERKKTVEELTMLSLVASKTTSGVVINDSEGKVEWVNSAFEQITGYSL 105 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 D+ K L+ V LS + +Q+ E L K+ + L + +I + Sbjct: 106 NDVKNKHLGDSLKGELTDVSIIQKARELS-EQKQSFEVDLLIYRKDGQPLWISVINSVIM 164 Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 ++ Y T+ DI+ K+ + +L AK+ A + S K F+ +SHEIRTPL A+IG Sbjct: 165 GNNGRVDKYIETIIDITAKKKAELELIAAKEEALQLSRAKDMFMGVMSHEIRTPLNAVIG 224 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 S ++ N PL + + E + ++ S ++ ++ND+LD +KIE+G + L + + Sbjct: 225 MSHILLNDN--PLESQK--ENLSILNFSAENLMTLINDVLDFTKIETGNVELEIARLDIR 280 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGG- 723 + + I ++ ANEK I + S +P I + D + QI LN++SN++ FT GG Sbjct: 281 DMIQSIIGSMKYKANEKGIYLTKSIDEAVPDIVMGDRARLVQILLNLVSNSVKFTSEGGV 340 Query: 724 QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 I + + + V +R V DTG+G+ +L + F Q GTGLGL ++ Sbjct: 341 NIDLKVIEQTKDTVRIRFGVSDTGIGIAENKLNTIFESFKQAEADTTRHYGGTGLGLAIS 400 Query: 782 KAMVDANMGKFYIFSTPAKGT 802 K ++ + + + S +G+ Sbjct: 401 KRLIQLHDSRINVDSVLGQGS 421 >gi|186682272|ref|YP_001865468.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186464724|gb|ACC80525.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 713 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/262 (31%), Positives = 138/262 (52%), Gaps = 12/262 (4%) Query: 557 TMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 T DI E KQ + +H A+ AE + K +FLA +SHE+RTPL AI+G+S++ Sbjct: 305 TCTDIHEQKQILEERAHLLELEQIARAKAETANRIKDEFLAILSHELRTPLNAILGWSKL 364 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 ++++R L + + I+++ NL + ++ DLLDIS+I GK+ L ++L + Sbjct: 365 LQSRR---LDQEKTSQALATIEKNANLQVQLIEDLLDISRILQGKLTLDITKINLKSTIL 421 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 A+ ++L A K I + T F N+ +++ D ++Q+ N+LSNA+ FTP GG+I + Sbjct: 422 SALETMRLAAETKLIEVSTVFEPNVGQVMGDSTRLQQVVWNLLSNALKFTPKGGKIEVRL 481 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 I+ V DTG G++ L F Q ++ G GLGL + + +V+ + Sbjct: 482 EQADGYAQII-VSDTGKGISPEFLPFVFDYFRQADSTSTRNFGGLGLGLAIVRNIVEIHG 540 Query: 790 GKFYIFSTPA-KGTLIEIIFPL 810 G S KG + + PL Sbjct: 541 GIVKAKSEGEDKGAIFTVSLPL 562 >gi|319957220|ref|YP_004168483.1| integral membrane sensor hybrid histidine kinase [Nitratifractor salsuginis DSM 16511] gi|319419624|gb|ADV46734.1| integral membrane sensor hybrid histidine kinase [Nitratifractor salsuginis DSM 16511] Length = 1054 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/220 (36%), Positives = 124/220 (56%), Gaps = 9/220 (4%) Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHEIRTPL I+GF++++KN PL +P E+ + I+ S + +L IVND+LD+ Sbjct: 383 FLANMSHEIRTPLNGIVGFTQLLKNT---PL-SPDQQEFISVIENSSDNLLSIVNDILDL 438 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQ 706 SKI + K+ L + E +A+ A EK I +IP+ L D + Q Sbjct: 439 SKINADKIELEQIAFNAIEKFEDAVESYGAKAAEKNIDFGLFVDPSIPKTLVGDPTKISQ 498 Query: 707 IALNILSNAIHFTPSGG--QIIISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQ 762 + +N++SNAI FT S G +++I T+ ++++ + VRDTG+G+T + K F Q Sbjct: 499 VIVNLVSNAIKFTNSNGDVEVLIEKTNETDKDATIYFAVRDTGIGITEEQKAKIFGAFSQ 558 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + GTGLGL ++ +V+ GK I S P KG+ Sbjct: 559 ADAGTSRKYGGTGLGLAISSKLVEKMGGKLDIESEPGKGS 598 >gi|295112753|emb|CBL31390.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus sp. 7L76] gi|315145505|gb|EFT89521.1| PAS domain S-box [Enterococcus faecalis TX2141] gi|315162568|gb|EFU06585.1| PAS domain S-box [Enterococcus faecalis TX0645] Length = 609 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 97/370 (26%), Positives = 176/370 (47%), Gaps = 31/370 (8%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 ME E +L S+L +DG+ +R G +++ N L E+++ L+ Sbjct: 254 MEAERNRLDSVLTHMTDGVIATDRRGKVITINEMALSLLNVKNENVIGTSLLELLDIEED 313 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYSLTMHDIS 562 + L E L + ++ S +EE + +R+ I ++ F + +HD++ Sbjct: 314 YTLRKLLEEPDELLIDRST------SDREEDQMIIRVDFTMIRRESGFITGLVCVLHDVT 367 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E QEKN E+E + +F++ VSHE+RTPLT++ + E + G NP Sbjct: 368 E--QEKN---------ERE---RREFVSNVSHELRTPLTSMRSYIEALSE---GAWENPE 410 Query: 623 YI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN- 680 + + ++ ++NDLL++S+++SG +L E V+ +E ++ + + Sbjct: 411 IAPNFLKVTLEETDRMIRMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIEN 470 Query: 681 -EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 +K IR F + D V Q+ NIL+NAI ++P GG I T N V+ Sbjct: 471 EQKNYKIRREFTKRDLWVELDTDKVIQVFDNILNNAIKYSPDGGVITCRLVETHNN-VVF 529 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 + D G+G+ +L K + F ++ ++ GTGLGL ++K ++ A+ G ++ ST Sbjct: 530 SISDQGLGIPKKDLGKVFERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEG 589 Query: 800 KGTLIEIIFP 809 +G+ I P Sbjct: 590 EGSTFYISLP 599 >gi|238913203|ref|ZP_04657040.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 920 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 128/256 (50%), Gaps = 17/256 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L+ AKK AE+ + KS L +SHE+RTP+ ++G E+++ P IE Sbjct: 377 ERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQT-------TPLNIE 429 Query: 626 YANYIDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 D + N +L I+N+LLD S+IESG LH E +L + +A+ +Q A K Sbjct: 430 QQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSK 489 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ +RT + P D ++QI +N+L NA+ FT +GG I T E++I V Sbjct: 490 KLSLRTFVGQHAPLYFHTDSIRLRQILVNLLGNAVKFTETGG--IRLTVKRHEEQLIFLV 547 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G G+ + + F Q + Q GTG+GL +A ++ G + S P G Sbjct: 548 SDSGKGIEIQQQSQIFTAFYQADTNSQ----GTGIGLTIASSLAKMMGGNLTLKSVPGVG 603 Query: 802 TLIEIIFPLYDTSHPH 817 T + ++ PL + P Sbjct: 604 TCVSLVLPLQEYQPPQ 619 >gi|238797166|ref|ZP_04640668.1| Signal transduction histidine-protein kinase barA [Yersinia mollaretii ATCC 43969] gi|238719013|gb|EEQ10827.1| Signal transduction histidine-protein kinase barA [Yersinia mollaretii ATCC 43969] Length = 915 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 127/237 (53%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A K A++ + KS+FLA +SHE+RTPL +IGF+ Q P +Y Sbjct: 268 ELGLANKRAQEAARIKSEFLANMSHELRTPLNGVIGFTR----QTLKTSLTPTQTDYLQT 323 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RS N +L I+ND+LD SK+E+ K+ L P L A+ E + L+ A+EK + + Sbjct: 324 IQRSANNLLCIINDVLDFSKLEAEKLILEHIPFPLRGALDEVVILLAHTAHEKGLELTLH 383 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV--ILRVRDTG 745 N++P +++ D ++QI N+L NAI FT G I+++ + + V ++ + DTG Sbjct: 384 INNDVPEQVVGDAMRLQQIVTNLLGNAIKFTEQGNIDILVAVQALTAQRVTLVVEIHDTG 443 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++ + + + F Q S R GTGLGL + + +V G S +G+ Sbjct: 444 IGISESQQAQLFQAFRQADASISRRHGGTGLGLVITERLVKEMGGDISFLSQVDRGS 500 >gi|256828945|ref|YP_003157673.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578121|gb|ACU89257.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1143 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 98/349 (28%), Positives = 164/349 (46%), Gaps = 25/349 (7%) Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519 A ++ A N GI R + +++ V D+ R+ V P +L Sbjct: 661 AVNEAHAAFNGLGIGDMAYRDIYEIYPVDVADVCRQGNEVVFSSGRPVRTEEWLPHF--- 717 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE-WKQEKNKLSHAKKIA 578 + EK L K KL + + + C + DI+E WK E+ L AK+ A Sbjct: 718 ----SGEKRFLSILKSPKLRADGTV----EYVVC---SGEDITERWKSEE-ALKKAKEQA 765 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ S KS FLA +SHEIRTP+ I+G ++++ N + + RS + ++ Sbjct: 766 EEASRVKSGFLASMSHEIRTPINGIMGMLQLLQTADL----NADQASFVDMAVRSCDRLV 821 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RI 697 +++D++D S+IE+GK+ + P+SL+ S L + +++ + +P RI Sbjct: 822 RLLSDIMDFSRIEAGKLTIQSAPMSLESVFSHVRELFTPLSGSNGVVLDFTLDPALPDRI 881 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYEL 753 L D ++QI N++ NA FT SG + + T+ E V V DTG+G+ + +L Sbjct: 882 LGDAFRLQQILNNLVDNACKFTTSGRITVQAWNLTAVEPRTVRVFFEVSDTGIGIPDEDL 941 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + PF Q+ + +G GLGL + K +V+ G + S KGT Sbjct: 942 RRLFDPFIQLCDGYVRSHKGVGLGLSICKRLVELMGGGMSVTSEAGKGT 990 >gi|325955797|ref|YP_004286407.1| putative histidine kinase [Lactobacillus acidophilus 30SC] gi|325332362|gb|ADZ06270.1| putative histidine kinase [Lactobacillus acidophilus 30SC] Length = 618 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 100/373 (26%), Positives = 178/373 (47%), Gaps = 41/373 (10%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E +L S+L SDG+ +R G + N+ ED++ KP L Sbjct: 261 ERRRLDSVLSHMSDGVLATDRHGNVSVVNQMALNFLNVKEEDVINKPIAEVLG------- 313 Query: 510 NHYLTEILSLDLRQTLEKITLG---STKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEW 564 L + S DL + ++I + +T++E +L S +I + F S +HD++E Sbjct: 314 ---LKDTSSQDLISSQKEIVVTIDPNTRDEMILHASFSLIKRVTGFVSGSVCVLHDVTE- 369 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGNPRY 623 Q+KN E S K F++ VSHE+RTPLT++ + E + + P P++ Sbjct: 370 -QQKN-----------EDSQKQ-FVSNVSHELRTPLTSLQAYIEALNEGAWKDPNIAPKF 416 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 +E + + ++ ++NDLL +S+++ G + E V+L++ V+ ++ + + Sbjct: 417 LEVTQ---QETSRMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDK 473 Query: 684 IL-------IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 I+ N + D + Q+ NI++NAI ++P GG I + T N Sbjct: 474 NNDKKKKYTIKRELGNQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTQNKNH- 532 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 VIL + D G+G+ +L K F ++ ++ GTGLGL +AK +V+A+ G+ + S Sbjct: 533 VILSISDQGLGIPRKDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADS 592 Query: 797 TPAKGTLIEIIFP 809 + KG+ I P Sbjct: 593 SEGKGSTFYISLP 605 >gi|56475846|ref|YP_157435.1| complex regulator protein [Aromatoleum aromaticum EbN1] gi|56311889|emb|CAI06534.1| probable complex regulator protein containing response regulator receiver and signal transduction histidine kinase domains [Aromatoleum aromaticum EbN1] Length = 1205 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 132/240 (55%), Gaps = 10/240 (4%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ S++KS FLA +SHE+RTPL +++ S ++ + G L + + +E+A+ I +G +L Sbjct: 530 ERVSAYKSQFLANMSHELRTPLNSLMILSSLLMQNKDGNL-SEKQVEFASTIHSAGTDLL 588 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 D++ND+LD+SKIE+G++ L F +++++ + SL Q A +KRI ++PR Sbjct: 589 DLINDILDLSKIEAGRIELDFADIAVEDLSTSMRSLFQSQAEQKRIAFSVEVEADVPRTF 648 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------EVILRVRDTGVGMTN 750 D + V QI N++SNA+ FT G++ + T S + V DTG+G+ Sbjct: 649 HGDTQRVHQILKNLVSNALKFTEH-GEVRLCVTFPSGSANPLPVPAIAFAVSDTGIGIPA 707 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + F Q S + GTGLGL ++ + G + S+ +KG++ + PL Sbjct: 708 DKQQGIFDAFQQADGSISRKYGGTGLGLSISLELARRMHGDIRMSSSESKGSVFVLYLPL 767 >gi|238754497|ref|ZP_04615852.1| Signal transduction histidine-protein kinase barA [Yersinia ruckeri ATCC 29473] gi|238707326|gb|EEP99688.1| Signal transduction histidine-protein kinase barA [Yersinia ruckeri ATCC 29473] Length = 902 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 131/237 (55%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ Q P +Y Sbjct: 248 ELGLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTR----QTLKTSLTPTQTDYLQT 303 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RS N +L I+ND+LD SK+E+ K+ L P L E + E + L+ A+EK + + Sbjct: 304 IQRSANNLLSIINDVLDFSKLEAEKLVLEHIPFPLRETLDEVVILLAHTAHEKGLELTMQ 363 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIIST-THTSNE-EVILRVRDTG 745 N++P +++ D ++Q+ N+L NAI FT +G I +S +HT + ++ + ++DTG Sbjct: 364 VNNDVPEQVVGDSMRLQQVMTNLLGNAIKFTENGNVDIHVSLRSHTRRQIKLAVEIQDTG 423 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++ + + + F Q S R GTGLGL + + +V G S +G+ Sbjct: 424 IGISEQQQSQLFQAFRQADASISRRHGGTGLGLVITERLVKEMDGDISFHSELNRGS 480 >gi|261340634|ref|ZP_05968492.1| sensor protein RcsC [Enterobacter cancerogenus ATCC 35316] gi|288317047|gb|EFC55985.1| sensor protein RcsC [Enterobacter cancerogenus ATCC 35316] Length = 948 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 132/258 (51%), Gaps = 7/258 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYMPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPLTLHGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVCLVGDYLT 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + + P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDTEP 678 Query: 799 AKGTLIEIIFPLYDTSHP 816 G+ I PLY +P Sbjct: 679 GMGSQFTIRIPLYSAQYP 696 >gi|209883640|ref|YP_002287497.1| PAS/PAC sensor signal transduction histidine kinase [Oligotropha carboxidovorans OM5] gi|209871836|gb|ACI91632.1| PAS/PAC sensor signal transduction histidine kinase [Oligotropha carboxidovorans OM5] Length = 816 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/260 (31%), Positives = 125/260 (48%), Gaps = 4/260 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT D+++ + L E K DF+ VS+E+R+PLT IIGF+ + + Sbjct: 556 LTFQDVTDTVNVERALRERNDALEAADQMKVDFVHHVSYELRSPLTTIIGFAHFLSDPAT 615 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GP+ + EY YI S N +L I+N++LD++ I +G M L PV L + V EA + + Sbjct: 616 GPM-TVKQSEYLGYITTSTNALLAIINNILDLATINAGAMTLDLGPVDLRKTVEEATAGL 674 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 Q I + ++ +AD R + QI N+L+NAI F+P G I S N Sbjct: 675 QDRLVHDNIRLAVEIDPSVTGFVADERRMVQIFYNLLANAIGFSPPNGTIRFSAWR-ENG 733 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V V D G G+ ++ F N + R G GLGL L ++ V+ + G + Sbjct: 734 AVCCAVSDAGPGIPPEMRDRMFDWFESRANGSRHR--GAGLGLSLVRSFVELHGGTVRVD 791 Query: 796 STPAKGTLIEIIFPLYDTSH 815 S +GT + FP T H Sbjct: 792 SAVDQGTTVTCEFPADQTFH 811 >gi|251796742|ref|YP_003011473.1| GAF sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] gi|247544368|gb|ACT01387.1| GAF sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] Length = 595 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 136/251 (54%), Gaps = 8/251 (3%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 YS+ + + E +Q KL K E + KSDF+A +SHE+RTP+TA+ G ++++ + Sbjct: 345 YSVNVRSM-ELQQANFKLEGLVKELEYLNELKSDFIATLSHELRTPITAVKGTVDILRKE 403 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G L N ++ +S +L+ VN+LLD +K+E+GK L + +E + EA Sbjct: 404 VLGKL-NDSQLDLLETAGKSIERLLNQVNELLDFAKMENGKFELMYSEFDFEELIREATH 462 Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +V N+K++ + R + AD + QI LN+LSN+I FTP G+I I Sbjct: 463 IVDSLINKKKLELAVEIHAGENRTMRADRERILQILLNLLSNSIKFTPQRGKITIKAYME 522 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 NE I V DTG+G+ + + F Q+ N QI GTGLGL +++ +++ + GK Sbjct: 523 DNEMTI-EVIDTGIGIPVEKQKNIFTKFYQVNN--QIN--GTGLGLAISRQLIEMHGGKI 577 Query: 793 YIFSTPAKGTL 803 ST +G++ Sbjct: 578 SFESTEGEGSV 588 >gi|116051045|ref|YP_790128.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14] gi|115586266|gb|ABJ12281.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14] Length = 741 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 136/252 (53%), Gaps = 10/252 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E ++ +L A + A + + KS FLA +SHEIRTP+ A+IG E++ QR P Sbjct: 223 DITERERLARQLREAMRQAGEANRAKSVFLATMSHEIRTPMNAVIGILELVL-QRLAPEQ 281 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R Y + +G+L L ++ D+LD++KIESG + L E V L V + + A Sbjct: 282 RERASLEVAY-EAAGSLQL-LIGDILDVAKIESGHLTLTPERVRLRHVVESVRRMFEGLA 339 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 +K + + + R +L D KQ+ N++SNAI FT GQ+ I S +E Sbjct: 340 RQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTER-GQVTIRLQERSLDEGR 398 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 I+R V D+G+G+ + + +PF Q+ + ++G GTGLGL + + +VD G + Sbjct: 399 AIVRVDVEDSGIGIAPADQARLFQPFIQVAKGRTVQG-GTGLGLAICRKLVDLMGGDVEM 457 Query: 795 FSTPAKGTLIEI 806 S P KGT + + Sbjct: 458 HSEPGKGTRVSL 469 >gi|212694928|ref|ZP_03303056.1| hypothetical protein BACDOR_04465 [Bacteroides dorei DSM 17855] gi|212662488|gb|EEB23062.1| hypothetical protein BACDOR_04465 [Bacteroides dorei DSM 17855] Length = 1444 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 124/236 (52%), Gaps = 6/236 (2%) Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIG-FSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 I +K S K F +SHE+RTPLT I G E+ + ++ G ++Y + ++++ Sbjct: 909 IEQKLSELKIKFFTNISHELRTPLTLIQGPIQELKEKEKLSQKG----MQYVDLMEKNTK 964 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L +VN +LD KI++GKM LH +L+E V ++ A E + A Sbjct: 965 QMLQLVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDI 1024 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELE 754 + AD V + NI+SNA FTP+GG I ++ + +++ +RV D+GVG+ +L Sbjct: 1025 MVWADKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDDDKHCYVRVEDSGVGIPQSKLS 1084 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + F Q N++ +GTG+GL L+K ++ + G+ Y S KG + I L Sbjct: 1085 EIFERFSQADNARGAYYQGTGIGLALSKEIISLHHGEIYAESPEGKGAVFTIELQL 1140 >gi|254415959|ref|ZP_05029715.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196177134|gb|EDX72142.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 569 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 87/261 (33%), Positives = 136/261 (52%), Gaps = 28/261 (10%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A++ AE+ S KS+FLA SHE+RTPL +IGF ++I G +P E + Sbjct: 308 ELELAREQAEEVSRLKSEFLASTSHELRTPLNGMIGFLKLILE---GMADDPE--EQREF 362 Query: 630 IDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I + N +L+I+ND+LDI+KIE+GKM L F PV L+ ++ A+ K + Sbjct: 363 IQEAHNSALHLLNIINDILDIAKIEAGKMELEFSPVELEYLFNKVYDFTAQQAHHKNL-- 420 Query: 687 RTSFANNIPRI------LADLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHTSNE 735 SF IP + + + + Q+ LN++ NAI FT GG ++I H + Sbjct: 421 --SFTLEIPAVYDGIVMYGNYQRLLQVMLNLVGNAIKFTDEGGITISAEVIRKKVHFQGQ 478 Query: 736 E----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 E V +RV DTG+G++ + +K + F Q+ GTGLGL +++ +V+ G Sbjct: 479 EFPGHVKVRVADTGIGVSLDKQDKLFQSFSQVHGGLNRPYGGTGLGLAISQKLVETMGGV 538 Query: 792 FYIFSTPAK-GTLIEIIFPLY 811 + FS G+ + PLY Sbjct: 539 VHFFSMGENLGSTVTFTVPLY 559 >gi|167748589|ref|ZP_02420716.1| hypothetical protein ANACAC_03362 [Anaerostipes caccae DSM 14662] gi|167651903|gb|EDR96032.1| hypothetical protein ANACAC_03362 [Anaerostipes caccae DSM 14662] Length = 1088 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 134/243 (55%), Gaps = 13/243 (5%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EY 626 + L A + A+K + KS FLA++SH+IRTP+ AI+G + + ++ + +P + E Sbjct: 685 RKALLAAYEAAKKANEAKSSFLAQMSHDIRTPMNAIMGMTSIAASR----INDPEKVREC 740 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--RI 684 ID S + +LD++N++LD+SKIE GK+ L EP L E +++ S+ + A +K + Sbjct: 741 LTKIDMSSSHLLDLINEILDMSKIEKGKIELTEEPFCLRELITDINSITRPEALQKGQEL 800 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EVIL 739 L RT + + D ++Q+ +N+++NA+ +T +GG+II+ + + Sbjct: 801 LFRTVDVVHTD-FIGDAGRIRQVLINLITNAVKYTQNGGRIIVEVQEVTGRTPGAASFVF 859 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V D G+GM L PF + +S+ R +GTGLG+ +A+ +V A G S Sbjct: 860 TVEDNGIGMDPDFLNYIFVPFSRADDSKVRRVQGTGLGMSIAQGIVSAMNGNIQAESRKG 919 Query: 800 KGT 802 +G+ Sbjct: 920 QGS 922 >gi|217971382|ref|YP_002356133.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223] gi|217496517|gb|ACK44710.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223] Length = 1191 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 88/261 (33%), Positives = 140/261 (53%), Gaps = 20/261 (7%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV----IKNQRF 615 D+S+ + +L +AK+IA+ S KS FLA +SHEIRTP+ AIIG E+ K+Q F Sbjct: 680 DVSDRVKLVEELEYAKEIADSASQAKSTFLATMSHEIRTPMNAIIGMLELALKRTKSQHF 739 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV--SLDEAVSEAIS 673 N + Y S N +L+++ D+LDI++IE+G+ L+ PV +L + + Sbjct: 740 DI--NSIKVAY-----DSANGLLELIGDILDIARIEAGQ--LYLSPVRSNLKNITTSVVR 790 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIIST 729 + A EK I ++ F + + IL D +KQI N++ NAI FT +G +I T Sbjct: 791 VFDGLAREKGISLQLDFTPELTKDILVDPIRIKQILSNLIGNAIKFTHNGSVKVKIQSKT 850 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + ++ V DTG+G++ + +K PF Q + G GTGLGL + ++ + Sbjct: 851 LVHAKRTLLFTVTDTGIGISEEDQQKLFTPFSQAHGANNTYG-GTGLGLMICHSLCEMMG 909 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G + S+P +GT I +I L Sbjct: 910 GTLTLESSPNQGTKISMILTL 930 >gi|120603378|ref|YP_967778.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] gi|120563607|gb|ABM29351.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] Length = 831 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 127/237 (53%), Gaps = 9/237 (3%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 +S + +AE + KS FLA +SH++RTPLT IIG +++++ P YI A Sbjct: 236 ISSRQAMAEAANRMKSAFLANMSHDMRTPLTGIIGMADLLEAPGCPPERRSAYI--AQLK 293 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 S NL L+IVND+ D S +ESG++ L P +L AV E + L + +K + + Sbjct: 294 GASANL-LEIVNDITDYSCLESGRLRLTPRPFALRNAVDECLGLFRFTCEQKGLTLTADI 352 Query: 691 ANNIPRILA--DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTG 745 +P L D R ++Q N++SNA+ FT G ++I S E+V+LR V+DTG Sbjct: 353 PPGLPDALTGDDFR-LRQALGNLVSNAVKFTRRGTITVVIREEERSTEDVMLRFTVQDTG 411 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 VG+ +E + + F Q + ++R GTGLGL + + + G + S P G+ Sbjct: 412 VGIPRHEQDAIFESFVQGGAAHELRMGGTGLGLAITRDIAAMCGGTAGVHSVPGAGS 468 >gi|195970207|ref|NP_384498.2| putative sensor histidine kinase transmembrane protein [Sinorhizobium meliloti 1021] gi|187904136|emb|CAC41829.2| Putative sensor histidine kinase transmembrane protein [Sinorhizobium meliloti 1021] Length = 696 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 135/256 (52%), Gaps = 14/256 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++E ++ A++ AE+ S KS LA VSHEIRTPL+ I+G S ++ R Sbjct: 155 RDVTEEMLAASQREEARRRAEEASRAKSRLLATVSHEIRTPLSGILGMSRLLAETRLSE- 213 Query: 619 GNPRYIEYANYI---DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 E NY+ +SG+ ++ +V DL+D S + G+ L L + V + ++ Sbjct: 214 ------EQKNYLAGMQQSGHTLVQLVEDLIDFSSLAVGRFQLRPSQEDLRQTVENVVEML 267 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A+EK I I + A +P R+L D ++Q+ N++ NA+ FT GG + + N Sbjct: 268 SPRAHEKNIEIGATVAIEVPERMLFDAARLRQVLFNVVGNAVKFTEKGG--VFVSVDIEN 325 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V +R+ D+G GM+ EL + + F Q + Q R +GTGLGL +++ +++A G Sbjct: 326 GSVRIRIDDSGPGMSADELARVFEEFEQAGDDAQ-RAKGTGLGLAISRRIMEAFGGSLTA 384 Query: 795 FSTPAKGTLIEIIFPL 810 S KG+ EI FP+ Sbjct: 385 TSMSGKGSRFEIRFPM 400 >gi|167033148|ref|YP_001668379.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1] gi|166859636|gb|ABY98043.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1] Length = 1149 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 136/248 (54%), Gaps = 3/248 (1%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E Q + +L ++ S +KS+FLA +SHE+RTPL + + ++++ G L + + Sbjct: 459 ELVQAQEELQARADELQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENAEGNLSDEQ 518 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +++A I +GN +L+++ND+LDI+K+E+GK+ + E ++ V + + A K Sbjct: 519 -VKFAESIYSAGNDLLNLINDILDIAKVEAGKLEVRPESTQVERLVEGLRGMFEPLAGHK 577 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + + +P L D + ++QI N+LSNAI FT G ++ ++ + ++ V Sbjct: 578 GLAFEVTAEAQVPATLFTDRQRLEQILKNLLSNAIKFTERG-KVSLNIGYQPGTGIVFAV 636 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RDTG+G+ + + F Q+ + R GTGLGL +++ + G+ + S+P +G Sbjct: 637 RDTGIGIAADQQQAIFGAFHQVDGTSNRRYGGTGLGLSISRDLAHLLGGQINVDSSPGQG 696 Query: 802 TLIEIIFP 809 ++ +I P Sbjct: 697 SVFSLILP 704 >gi|117925933|ref|YP_866550.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609689|gb|ABK45144.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 997 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 97/370 (26%), Positives = 183/370 (49%), Gaps = 20/370 (5%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 + R+M++E + +++ + + I + +G ++ N A KL GY +L L Sbjct: 345 SARQMQLEREKYRGVVDQAGESLLIFDLDGRVVEANSAAEKLLGYRRVTLLNYTQDQLLA 404 Query: 503 QN-TPSVMNHYLTEILSLDLRQTLEKITLGS---TKEEKLLSLRIIIKKLPFSSC-YSLT 557 N T ++ NH D + +T + T + + L + + L ++L Sbjct: 405 PNSTLTIPNH------DGDNAENPSHVTFETRLHTADGQDLEVEVWAGFLEIDYVQHTLW 458 Query: 558 M-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DI++ K+ + ++ A+ +AEK KS FLA +SHEIRTP+ AI+G +E++ Sbjct: 459 LARDITDRKRLEAEMVAARDMAEKAYQAKSIFLATMSHEIRTPMNAILGTAELLAETEL- 517 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + Y +G +L ++ND+LDISK E+G + L S+ E + + L+ Sbjct: 518 ---DADQSRYVRMFTSAGENLLQVINDILDISKFEAGHIELEQRVFSVREMMGDLHKLLA 574 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS-TTHTSN 734 EK + + + + P ++ D ++Q+ +N+L NAI FT +G +++ + ++ Sbjct: 575 YKCKEKGLYLLVNASETTPDSLIGDPTRLRQVLINLLGNAIKFTDTGTVALLAHSEQIAD 634 Query: 735 EEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++V L V DTG+G+++ + EK +PF Q GTGLGL + ++++ GK Sbjct: 635 KQVQLAFHVVDTGIGISDADQEKVFRPFEQAGTYITRTHGGTGLGLSICQSLIHKMGGKI 694 Query: 793 YIFSTPAKGT 802 + S G+ Sbjct: 695 TVHSRADHGS 704 >gi|153008157|ref|YP_001369372.1| histidine kinase [Ochrobactrum anthropi ATCC 49188] gi|151560045|gb|ABS13543.1| histidine kinase [Ochrobactrum anthropi ATCC 49188] Length = 858 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 103/358 (28%), Positives = 177/358 (49%), Gaps = 15/358 (4%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT-----VFLEQNTPSVMNHY 512 L+ ++ +A+ +G I +N + + L+ P+ I+ + E+ + + + Sbjct: 499 LDHLAEAVAVFGSDGRIRLSNPSFADLWALPMPLIVEGTHISSIARICGERGGNGLWDDF 558 Query: 513 LTEILS-LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 ++ + LD R +G + + L + LP LT D+++ + + L Sbjct: 559 VSTVTGFLDTRDG----RMGQVELDDGTILSFAVVPLPKGQTM-LTFIDVTDTVRVERAL 613 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 + E K+DF+ VS+E+R+PLT IIGF+E+++ FG L N R IEY ++I Sbjct: 614 KEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL-NERQIEYLDHIS 672 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 S +++L IVND+LD++ +++G M L VS+ EA+S A S V + I + A Sbjct: 673 TSSSVLLTIVNDILDLATVDAGIMELEVGEVSVVEAISAAASRVGERMRDHDIGLDIDIA 732 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 +++ AD V+Q+ N+LSNA ++ P G I + + EV+ V D G GM Sbjct: 733 DDVDVFKADANRVRQVLFNLLSNATNYAPEGSSIQLQVAREGS-EVVFAVHDDGPGMPGE 791 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L+ K F PN + G GLGL + K+ V+ + G I + +GT + FP Sbjct: 792 VLDTVFKRFQSYPNGGRR--RGAGLGLAIVKSFVELHGGSVDIDTGSGRGTTVICRFP 847 >gi|281206650|gb|EFA80836.1| histidine kinase [Polysphondylium pallidum PN500] Length = 1688 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/266 (30%), Positives = 137/266 (51%), Gaps = 17/266 (6%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ D++ +++ +L K+ AE+ + KS F+A VSHE+RTPL+ +IG S+++ Sbjct: 552 TLRDVTS-RKDMQRLILEKEAAEEANKAKSAFVATVSHEVRTPLSGVIGVSDLLLETVL- 609 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 N +Y I +S +L I+ND+LD SK+ES ++ + P S+ E I ++ Sbjct: 610 ---NEEQRDYVQTIQKSSQALLTIINDILDYSKLESKQLKMETIPFSIIETGQAVIYMLS 666 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII-------IST 729 + N+ L+ N ++ D V+Q+ LN++SNAI FT G + ++ Sbjct: 667 VATNDDVDLLFRVPPNVPDVVIGDAMRVRQVLLNLVSNAIKFTSHGHVLCDISVVESLNP 726 Query: 730 THTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 H+S + + + V DTG+G+ E +PF Q NS + GTGLGL + K ++ Sbjct: 727 LHSSRSDNTIHLCITVEDTGIGIPQSLFEAIFEPFSQADNSTTRKYGGTGLGLSITKRLI 786 Query: 786 DANM-GKFYIFSTPAKGTLIEIIFPL 810 + M G ++ ST G+ + P Sbjct: 787 EEVMGGTIHVSSTVGLGSTFKCTIPF 812 >gi|269217234|ref|ZP_06161088.1| two-component sensor histidine kinase [Slackia exigua ATCC 700122] gi|269129371|gb|EEZ60456.1| two-component sensor histidine kinase [Slackia exigua ATCC 700122] Length = 575 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 140/242 (57%), Gaps = 6/242 (2%) Query: 565 KQEKNKLSHAKKIAEK---ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +Q + + +H +++ E+ ++ +K+DFLA VSHE+RTPLT+II F++++ G Sbjct: 312 EQLQEQRAHVERVNERLKRDNQYKTDFLAIVSHELRTPLTSIIAFADLLDTHVPRDGGES 371 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 R + I+++G ++L++V+++L+ ++I+SG+ + E + + + V + + A++ Sbjct: 372 R--RQLDEIEKNGQILLEMVDNVLETARIQSGRDEVSIELIDVSDLVGMVVQSLAPLASK 429 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LR 740 K I + + ++ +P +++D +++I N+++NAI FT GG + ++ + E + + Sbjct: 430 KGIALTSDVSSEVPLVMSDWEKLRRILSNLVNNAIKFTGEGGSVAVAVARDAEEGFVRIE 489 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 VRDTG+G+ + E + F Q S R G+GLGL L K + G + S P + Sbjct: 490 VRDTGIGIPADKHELIFERFTQENMSTARRFGGSGLGLSLVKDLAGILGGDVSLTSRPGE 549 Query: 801 GT 802 G+ Sbjct: 550 GS 551 >gi|288942192|ref|YP_003444432.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897564|gb|ADC63400.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 691 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 85/245 (34%), Positives = 129/245 (52%), Gaps = 8/245 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPLGNPRYIEYAN 628 +LS A+ AE + KS FLA +SHEIRTPL AI+G + + I++Q + R + Sbjct: 161 QLSEARAQAETANQAKSAFLANMSHEIRTPLNAILGLTYLLIRDQS----SSERSRDILT 216 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+ S N +L I+ND+LD+SKIE+GK LH + S + + SLV KR+ Sbjct: 217 KIEHSANHLLSIINDILDVSKIEAGKFTLHTQDFSTKDLFEQLDSLVLGQVAAKRLRFIR 276 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTG 745 P + D ++Q LN LSNAI FT +G +++ + ++++R V DTG Sbjct: 277 CIDALPPLLHGDQACLRQALLNYLSNAIKFTKAGEIKLVAEILDETATDLLVRFDVYDTG 336 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ +L + +PF Q+ NS R EGTGLGL + + G+ S +G+ Sbjct: 337 IGIAPADLAQLFRPFSQVDNSVARRFEGTGLGLVITHRLAQLMGGETGAESQVGQGSRFW 396 Query: 806 IIFPL 810 I L Sbjct: 397 ITVRL 401 >gi|294505908|ref|YP_003569966.1| sensor/response regulator hybrid [Salinibacter ruber M8] gi|294342236|emb|CBH23014.1| sensor/response regulator hybrid [Salinibacter ruber M8] Length = 712 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 127/247 (51%), Gaps = 4/247 (1%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ + + A+ AE+ + KS FLA +SHEIRTPLT+IIGF+E + ++ G GN Sbjct: 449 EAERARTEAEVARDQAEEAARLKSAFLANMSHEIRTPLTSIIGFAEALGDE-VGD-GNGN 506 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +A I+RSG +LD ++ +L++SK+E+G+M L EPV L A ++ A EK Sbjct: 507 TGRFAGLIERSGRRLLDTLDGVLNLSKLEAGQMGLETEPVDLVTKARRAAEELRPQATEK 566 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + + AD SV+ + N++SNAI +T GG + N +L V Sbjct: 567 GLGLTVETGRPEVWARADAGSVQIVLQNLVSNAIKYTEEGG--VHVRVFRENGWAVLEVE 624 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+GM + KPF Q EG+G+GL + + + G+ + + G+ Sbjct: 625 DTGIGMDPALADDLFKPFRQASEGLGRAYEGSGVGLAVTQKATEEMGGQVDVETEAGAGS 684 Query: 803 LIEIIFP 809 + P Sbjct: 685 CFTVRLP 691 >gi|261253472|ref|ZP_05946045.1| multi-sensor hybrid histidine kinase [Vibrio orientalis CIP 102891] gi|260936863|gb|EEX92852.1| multi-sensor hybrid histidine kinase [Vibrio orientalis CIP 102891] Length = 1037 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 146/546 (26%), Positives = 248/546 (45%), Gaps = 91/546 (16%) Query: 316 DEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 DE ++TP +V +P + + ++F+ ++LL S D K Sbjct: 218 DELSDITPISVGNTTLPPVPISAEKDMFFGQANYLL----------------SVTFDGEK 261 Query: 375 -LSDNNAIKPVML--------------YRSDRTCIAA-----SARLHTIQWNR------- 407 LS +AIK +ML + + RT I +++ I NR Sbjct: 262 ALSSLSAIKQMMLLIFTLSALVLAFTLWVTLRTLIVQPLNQLDSQIRHISSNRLDQRLPD 321 Query: 408 -----ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ------LCS 456 N++A T NQ + + N I + ++ + K K + EV Q L + Sbjct: 322 FSSPEANTIAATI------NQLLQRVHTNTISIQRLNEEV-KLKQQSEVSQKLVSQKLEA 374 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGY--------PVEDILRKPFT----VFLEQN 504 IL+ +DGI IN +G ILS N+A ++FGY P+E ++ K + VF+++ Sbjct: 375 ILDTAADGIITINDKGKILSFNQAAQRMFGYLETEAIGMPIEKLMPKKYASMHQVFIDRY 434 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 + + + + + D R E + E + L I + YS + DIS+ Sbjct: 435 RATGRSKIIG-VKTKDGRLGREFQAINKAGELFPILLSIAQVETNDGVIYSGLVKDISQQ 493 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG-PLGNPRY 623 KQ +N L AK+ AE+ + KS+FLA +SHEIRTP+ IIG +++ + Y Sbjct: 494 KQAENALIAAKEEAEQAARSKSEFLAVMSHEIRTPMNGIIGMLDLLLENNLNTSQSHQAY 553 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQLYAN 680 + + + + +L ++ND+LD SKI++ K+ L HF + +E ++ N Sbjct: 554 LAHTSALS-----LLGLLNDILDFSKIDADKLELERQHFNLRHMLGDFAEQMAASLTNPN 608 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + IL +++ ILAD ++QI N++SNA+ FT G+++I+ N+E + Sbjct: 609 VEIILDMVQVEHSM--ILADSTRIRQIFSNLVSNALKFTEQ-GEVVITVRLEENDENTWQ 665 Query: 741 ----VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 ++D+G+G+ L F Q+ S R GTGLGL + K + A G + S Sbjct: 666 LNASIKDSGIGIPQDRLNSLFDKFSQVDASTTRRYGGTGLGLAIVKRLCQAMKGSVTVSS 725 Query: 797 TPAKGT 802 KG+ Sbjct: 726 EAGKGS 731 >gi|160936663|ref|ZP_02084030.1| hypothetical protein CLOBOL_01554 [Clostridium bolteae ATCC BAA-613] gi|158440454|gb|EDP18199.1| hypothetical protein CLOBOL_01554 [Clostridium bolteae ATCC BAA-613] Length = 970 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/250 (32%), Positives = 139/250 (55%), Gaps = 12/250 (4%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + L+ A K A+ + ++ F + +SH+IRTP+ IIG + V N L N +E Sbjct: 435 REHLADALKQAQNSNQARTAFFSSMSHDIRTPMNGIIGMTNVALNS----LDNMEKVESC 490 Query: 628 -NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR--I 684 N I + +L ++N++LD+S+IESGK++L E V L ++ IS ++ ++KR Sbjct: 491 LNKITAASGHLLQLINEVLDMSRIESGKISLKEENVHLPSMMANLISFIRPDMDKKRQSF 550 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR-- 742 +++ + +++D +++I LN+LSNA+ +T +GG I + T T+ + +R+R Sbjct: 551 ELKSQILEH-DTVISDGLHLQKILLNLLSNAMKYTQAGGTISMQITETNVDADTIRLRFV 609 Query: 743 --DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 D G+GMT LE+ PF + +S+ + GTGLGL + K++VD G Y+ S Sbjct: 610 VEDNGIGMTPEFLERVFAPFERAEDSRMSQATGTGLGLAITKSIVDMMEGDIYVESEKDM 669 Query: 801 GTLIEIIFPL 810 G+ + PL Sbjct: 670 GSRFTVELPL 679 >gi|310828525|ref|YP_003960882.1| hypothetical protein ELI_2950 [Eubacterium limosum KIST612] gi|308740259|gb|ADO37919.1| hypothetical protein ELI_2950 [Eubacterium limosum KIST612] Length = 913 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 129/248 (52%), Gaps = 13/248 (5%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A + +S K+DFL+ +SH+IRTP+ AI+G + + + P + + N I Sbjct: 390 LEDAYQAVRVANSAKTDFLSSMSHDIRTPMNAIMGMTAIARVNLESP---EKVGDCLNKI 446 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + S +L ++N++LD+SKIESGK++L FE L E + EA + + EK+ R Sbjct: 447 NVSSRHLLSLINEVLDMSKIESGKLDLSFEAAELPELIQEASDMCKALLTEKKHDFRVIV 506 Query: 691 AN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-------TSNEEVILRVR 742 +++ D ++Q+ LN+LSNAI +TP GG+I + E I Sbjct: 507 GQVQHEKVITDGDRLQQVFLNLLSNAIKYTPEGGKITLLINEKPSIIPKKGQYEFIF--T 564 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D G+GM L + +PF + +S+ + +GTGLG+ + + +V G + S P KG+ Sbjct: 565 DNGIGMEQEFLTQIFEPFSRAEDSRISKVQGTGLGMAITENIVHMMNGTIDVKSEPGKGS 624 Query: 803 LIEIIFPL 810 + PL Sbjct: 625 QFIVTVPL 632 >gi|303317536|ref|XP_003068770.1| Histidine Kinase A (phosphoacceptor) domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|240108451|gb|EER26625.1| Histidine Kinase A (phosphoacceptor) domain containing protein [Coccidioides posadasii C735 delta SOWgp] Length = 2340 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 127/232 (54%), Gaps = 11/232 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ + + H K+ E+ + KS FLA +SH++RTP+T +IG SE++K + + Sbjct: 1861 KEAEAEARHNVKLKEEAAKAKSIFLANISHDLRTPMTGVIGLSELLKQTNL----DRQQD 1916 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 Y I + +L ++ND+LD SK+E+GKM + P++L + ++E + ++ Y + R Sbjct: 1917 VYVESIRVCADTLLTLINDILDFSKLEAGKMKVSTVPLNLRQTIAEVVRALR-YTHRDRG 1975 Query: 685 LIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVI 738 L ++I +L D + QI +N+LSN+ FTP G + + +E V Sbjct: 1976 LETIEDLDDIAPDLLVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVRAKVAEEDETTIRVT 2035 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 V DTG+G++N L + +PF Q +S G+GLGL + KA+++ +G Sbjct: 2036 CIVADTGIGISNEHLARLFRPFSQADSSTARSYGGSGLGLSICKAIIEEVLG 2087 >gi|167747901|ref|ZP_02420028.1| hypothetical protein ANACAC_02631 [Anaerostipes caccae DSM 14662] gi|167652632|gb|EDR96761.1| hypothetical protein ANACAC_02631 [Anaerostipes caccae DSM 14662] Length = 814 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 89/290 (30%), Positives = 144/290 (49%), Gaps = 21/290 (7%) Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 I+S+ + T+ T TKE L I++ + LT +S + KN+ + Sbjct: 272 IISIVAKDTVSANTAALTKE-----LSILVTACAGVFVFLLTCVAVS-FISSKNQ----R 321 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 +IAE KS FLA +SHEIRTP+ A+ G SE++ + + + EY N I S N Sbjct: 322 RIAE----MKSAFLANMSHEIRTPMNAVTGVSELLLREDL----SAKQREYVNTIAHSSN 373 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L ++ND+LD SKIESGK L E SL +++ +L L K + +P Sbjct: 374 SLLSVINDILDFSKIESGKFTLIEEEYSLRSLITDITALTVLKIGAKPVCFYIDLDEKLP 433 Query: 696 RIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--VILRVRDTGVGMTNYE 752 L D+ VKQI +N+L NA+ FT G + + N + +++ V DTG+G+ + Sbjct: 434 AFLYGDMTRVKQIMVNLLGNAVKFTEQGHICLRLSGRIENGDFWLVMTVEDTGIGIRKQD 493 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +++ F Q+ GTGLGL +++ + + G + S +G+ Sbjct: 494 MDRLFHSFEQVDTHHSHSTGGTGLGLAISRNLAEMMEGSIDVESVYGEGS 543 >gi|332704490|ref|ZP_08424578.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554639|gb|EGJ51683.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 842 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 87/281 (30%), Positives = 143/281 (50%), Gaps = 28/281 (9%) Query: 543 IIIKKLPFS------SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 ++ K LP +C+ DI+E K + L AK+ AE + KS+FLA +SHEI Sbjct: 412 VLSKGLPIRHENGKIACWVGVNLDITERKMMEEDLRQAKQAAEAANQAKSEFLASMSHEI 471 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTP+ IIG +E+ Q P R +Y + +S N +LDI+ND+LD+SKIE+G++ Sbjct: 472 RTPMNGIIGLTELALMQE--PKAKIR--DYLQMVKQSANSLLDIINDILDLSKIEAGRVE 527 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715 L L + + +++ A K + T+ +P I D ++QI +N++ NA Sbjct: 528 LEHADFDLRDMLDSLFETMRIGAERKGLSFSTAIDPGVPDWIKGDEGRLRQIFVNLIGNA 587 Query: 716 IHFTPSGGQIII------------STTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFG 761 I +T + GQ+ + + + E V L V+DTG G+ +L + +PF Sbjct: 588 IKYTEA-GQVSVRVGVEDGRGAQDAGGRNTPERVCLVASVKDTGGGIPKDKLGRIFEPFD 646 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 S + +GTGLGL + K +V+ G+ + S +G+ Sbjct: 647 TGARSAKY--DGTGLGLAITKRLVELMGGRITVQSELGRGS 685 >gi|119186753|ref|XP_001243983.1| hypothetical protein CIMG_03424 [Coccidioides immitis RS] Length = 2341 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 127/232 (54%), Gaps = 11/232 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ + + H K+ E+ + KS FLA +SH++RTP+T +IG SE++K + + Sbjct: 1862 KEAEAEARHNVKLKEEAAKAKSIFLANISHDLRTPMTGVIGLSELLKQTNL----DRQQD 1917 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 Y I + +L ++ND+LD SK+E+GKM + P++L + ++E + ++ Y + R Sbjct: 1918 VYVESIRVCADTLLTLINDILDFSKLEAGKMKVSTVPLNLRQTIAEVVRALR-YTHRDRG 1976 Query: 685 LIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVI 738 L ++I +L D + QI +N+LSN+ FTP G + + +E V Sbjct: 1977 LETIEDLDDIAPDLLVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVRAKVAEEDETTIRVT 2036 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 V DTG+G++N L + +PF Q +S G+GLGL + KA+++ +G Sbjct: 2037 CIVADTGIGISNEHLARLFRPFSQADSSTARSYGGSGLGLSICKAIIEEVLG 2088 >gi|15615718|ref|NP_244022.1| two-component sensor histidine kinase involved in phosphate regulation [Bacillus halodurans C-125] gi|10175778|dbj|BAB06875.1| two-component sensor histidine kinase involved in phosphate regulation [Bacillus halodurans C-125] Length = 589 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 104/381 (27%), Positives = 191/381 (50%), Gaps = 48/381 (12%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 ++ +++ +L +++E G+ +IN G I N+ DI ++ ++L Q Sbjct: 236 KRHQVQKERLETLIENMGSGLILINTRGDISLINKTC--------HDIFQEDTDLWLHQL 287 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-------------IIKKLPFS 551 V+ H EI+ + ++ I L ++ + + L I I+++ Sbjct: 288 YHDVIKH--KEIIKI-----VQDIFLTEKRQRRQVKLPIHLEYRHFDVHGAPIVRENGKL 340 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 +L HDI+E K KL +K DF+A VSHE++TP+T+I GF+E + Sbjct: 341 KGIALVFHDITELK----KLEQVRK----------DFVANVSHELKTPVTSIKGFTETLL 386 Query: 612 NQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + G + + + ++ + I + + +++DLL++SKIE L+++ +L VSE Sbjct: 387 D---GAMHDEQLRDQFLHIIWKESERLQSLIHDLLELSKIEQNYFQLNWQQTNLFAVVSE 443 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 ++L++ A EK I I S + + D +KQIA+N+++NAI +T +GG+I ++ Sbjct: 444 VMTLLKGKAEEKGIDISLSAEGSFD-LEGDPERLKQIAINLVNNAITYTSNGGRIDLALK 502 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + V V DTG+G+ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 503 -DHGDVVEFEVNDTGIGIRESEIPRIFERFYRVDRARSRNSGGTGLGLAIVKHLVEAHQG 561 Query: 791 KFYIFSTPAKGTLIEIIFPLY 811 K + S KGT I F Y Sbjct: 562 KILVESEFGKGTTFTIQFHRY 582 >gi|218548321|ref|YP_002382112.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia fergusonii ATCC 35469] gi|218355862|emb|CAQ88477.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Escherichia fergusonii ATCC 35469] Length = 949 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 84/259 (32%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT G II + + Sbjct: 561 VRKQLGLYCFIEPDVPVTLNGDPMRLQQVISNLLSNAIKFTDIG--CIILHLARDGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF + Q +GTGLGL + + +++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFLVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ I PLY +PH Sbjct: 679 GMGSQFTIRIPLYGAQYPH 697 >gi|70730615|ref|YP_260356.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] gi|68344914|gb|AAY92520.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] Length = 1164 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 135/250 (54%), Gaps = 7/250 (2%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN-- 620 E + + +L + ++ S +KS+FLA +SHE+RTPL + + ++++ P N Sbjct: 472 ELNEAQTQLEERAEELQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAE---NPQENLS 528 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P +++A I +GN +L+++ND+LDISK+E+GK+ + E S+ V SL Q Sbjct: 529 PEQVKFAESIYSAGNDLLNLINDILDISKVEAGKLEVRPENASVPRLVDGLRSLFQPLTQ 588 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 +K + + P++L D + V+QI N+LSNA+ FT GQ+ ++ + + Sbjct: 589 DKGLEFKVELQPGAPQMLFTDRQRVEQILKNLLSNAVKFTEK-GQVSLTVSAQPGAGIAF 647 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V+D+G+G+ + + + F Q + R GTGLGL +++ + G + S P Sbjct: 648 AVQDSGIGIAQDQQQSIFEAFRQADGTTNRRYGGTGLGLSISRDLATLLGGSISVSSEPG 707 Query: 800 KGTLIEIIFP 809 +G++ ++ P Sbjct: 708 RGSIFTLVLP 717 >gi|87307716|ref|ZP_01089859.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] gi|87289330|gb|EAQ81221.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] Length = 636 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 122/237 (51%), Gaps = 9/237 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KSDFLA +SHE+RTPL +I+GFS+V+ + L N + Y I +SG L+LD++ND+ Sbjct: 356 KSDFLANMSHELRTPLNSILGFSDVLSD--IDSL-NDKQKRYVQNIQKSGRLLLDMINDI 412 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD++KIESG+M + S+ V +V+ EK + + + + D + Sbjct: 413 LDLAKIESGRMEVRPSEFSVAAVVRANCDMVRSLIEEKNLDLECDVHDGGEPMFQDQTKL 472 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ-- 762 +QI N+LSNAI FTP GG+I + ++ + L V DTGVG+ + E + F Q Sbjct: 473 QQILTNLLSNAIKFTPEGGRITCRVSREAD-MMKLAVEDTGVGIAEEDREIIFEKFRQGA 531 Query: 763 -IPNSQQIRGE--GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 P + + E GTGLGL + + G + S G+ I P P Sbjct: 532 VSPRNDSLTREFSGTGLGLSIVMEICKLLDGSIEMESQLGSGSTFTIRIPWIADEGP 588 >gi|330894540|gb|EGH27201.1| PAS protein [Pseudomonas syringae pv. mori str. 301020] Length = 1037 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 131/260 (50%), Gaps = 7/260 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E KQ + +L A ++A + + KS FLA +SHEIRTP+ AIIG E+ Sbjct: 523 DITERKQLEQQLQKAMRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLELECAHALRKGH 582 Query: 620 NP-RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P + ++ A+ RS ++ ++ + LD+++IE+G M L SL I L Sbjct: 583 TPSQGLQVAH---RSATELVALIGESLDLARIEAGGMQLSLTVTSLQALFEGVIELFSAQ 639 Query: 679 ANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A EK + +R F+ L LR ++Q+ N+L NA+ FT G ++ + Sbjct: 640 AREKDLELRLEFSEQAQGDYWLDPLR-LRQVLHNVLGNALKFTRQGSVVLRVVALDDSSR 698 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V + ++D+G G+ +K +PF Q + G GLGL + + +V+ G ++S Sbjct: 699 VRIAIQDSGEGIEPERQQKIFQPFTQASDDTAAHYGGGGLGLSITRQLVELMKGDISLYS 758 Query: 797 TPAKGTLIEIIFPLYDTSHP 816 P +GTL+ I PL S P Sbjct: 759 EPGEGTLVNIDLPLVRVSEP 778 >gi|149280709|ref|ZP_01886819.1| Signal transduction histidine kinase [Pedobacter sp. BAL39] gi|149228533|gb|EDM33942.1| Signal transduction histidine kinase [Pedobacter sp. BAL39] Length = 536 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 133/244 (54%), Gaps = 8/244 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + + +L AK+ AE+ K +FLA +SHEIRTP+ IIG + ++K +P Sbjct: 138 ELEAYQKELIKAKEQAEQGKRIKENFLANMSHEIRTPINGIIGLASLLKKTTL----SPD 193 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 E ++ S + +L ++ND+LD+SKIESGK ++ + + ++ +L+++ A EK Sbjct: 194 QEEMIRLLEISSDSLLGVINDILDLSKIESGKFKINRAETDVIKTCTDVTNLLRIRAMEK 253 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVI 738 ++ + T + +P I+AD + QI +N++ NAI FT SG ++ +N +V Sbjct: 254 KLDLITDYDPALPNLIMADSLRLNQILMNLIGNAIKFTASGSVTLKVEALDKKGNNIQVR 313 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG+G+ +++K + F Q I+ GTGLGL + K + + G +FS Sbjct: 314 FSVIDTGIGIAKDKIDKIFETFEQADEQTTIKFGGTGLGLSIVKNLAELKGGILEVFSEE 373 Query: 799 AKGT 802 G+ Sbjct: 374 GHGS 377 >gi|126660737|ref|ZP_01731835.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Cyanothece sp. CCY0110] gi|126617978|gb|EAZ88749.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Cyanothece sp. CCY0110] Length = 391 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 132/243 (54%), Gaps = 4/243 (1%) Query: 563 EWKQEKNKLSHAKKIAEKESSHK-SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E KQ++ ++ H K + +E+S + S FLA +SHE+RTP+ AI+GFS+++ Q PL + Sbjct: 152 ELKQQQKQI-HLKNLQLQEASRRQSQFLATISHELRTPMNAIMGFSQLLLRQYPDPLSSQ 210 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + + S NL L ++N++LD SK+ + +M+L E L V I + Sbjct: 211 QTDIVQRIFNNSQNL-LTLINEVLDYSKLNTDQMDLTVEEFDLSMLVQFTIKELSCLTIN 269 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 K + + + P I D +++I +N+LSNAI FTP+ G I + +++++ +RV Sbjct: 270 KDLTLNVDVNLSNPLIFNDKNFLRRILINLLSNAIKFTPT-GHIEVKVWEMNSQKIAIRV 328 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ L+ PF Q+ + + GTGLGL + +++ G+ ++ S K Sbjct: 329 EDTGIGIAQEHLKSIFSPFQQVDQTLTRQHSGTGLGLAIVHSLIKMMEGEIHVTSELGKA 388 Query: 802 TLI 804 + Sbjct: 389 QFL 391 >gi|85059559|ref|YP_455261.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Sodalis glossinidius str. 'morsitans'] gi|84780079|dbj|BAE74856.1| capsular synthesis sensor protein RcsC [Sodalis glossinidius str. 'morsitans'] Length = 958 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 133/253 (52%), Gaps = 7/253 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L +AE+ + KS FLA VSHE+RTPL IIG +++K + P G Sbjct: 448 DVSARVRMEESLQDMAAVAEQANQAKSMFLATVSHELRTPLYGIIGNLDLLKTKAL-PDG 506 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + + S L+L+I++D+LD SKIES ++ + + S E VS + Sbjct: 507 VDRLVMA---MSNSSALLLNIISDILDFSKIESEQLKIEPKEYSPRETVSYIVGSYLSLV 563 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +KR+ + ++P L D ++Q+ N+L+NAI FT SG I+ T + + ++ Sbjct: 564 VKKRLGLYCFIDPDVPDSLRGDPVRLQQVLSNLLNNAIKFTRSGN--IVVTVYCRDGYLL 621 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 VRDTGVGM E+ + PF Q+ Q +GTGLGL + + +V+ G + S Sbjct: 622 FSVRDTGVGMQTREVMQLFDPFVQLGEGGQRPIQGTGLGLAICEKLVNLMDGDIAVESER 681 Query: 799 AKGTLIEIIFPLY 811 G+ I PLY Sbjct: 682 GLGSRFTIRLPLY 694 >gi|332524684|ref|ZP_08400883.1| PAS/PAC sensor signal transduction histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332107992|gb|EGJ09216.1| PAS/PAC sensor signal transduction histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 856 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 133/233 (57%), Gaps = 17/233 (7%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FL+ +HE+RTP+ ++ GF+E++ + P+ R + I R +L++++VN+L Sbjct: 616 KSEFLSTAAHELRTPMVSVFGFTELLLRR---PVSEERRRDMLQTIHRQASLLINMVNEL 672 Query: 645 LDISKIES--GKMNLHFEPVSLDEAVSEAIS--LVQLYANEKRILIRTSFANNIPRILAD 700 LD+++IE+ GK +L EP LD V++A+ L+Q A+E +I A+ + D Sbjct: 673 LDLARIEARQGK-DLKREPCRLDSLVTQAVGPMLIQGGAHELQI----DVAHPDCVLDVD 727 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGVGMTNYELEKAM 757 + N+LSNA+ ++P GG I+++T V +RV D G+GMT+ +L + Sbjct: 728 PEKTNRALTNVLSNAVKYSPDGGTIVVTTQSGELHGEPAVGVRVTDHGIGMTSEQLARVF 787 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F + S I GTGLG+ L K +V+ G+ + STP +GT + + PL Sbjct: 788 ERFYRADPSGNI--PGTGLGMSLVKEIVELQGGRVDVASTPGRGTTVTLWLPL 838 >gi|238918266|ref|YP_002931780.1| hybrid sensory histidine kinase TorS [Edwardsiella ictaluri 93-146] gi|238867834|gb|ACR67545.1| tmao reductase sytem sensor tors, putative [Edwardsiella ictaluri 93-146] Length = 921 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 129/247 (52%), Gaps = 13/247 (5%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AE KS FLA +SHEIRTPL I+G ++++ Q+ +PR +Y I+ Sbjct: 424 QARAEAENADRAKSAFLAAMSHEIRTPLHGILGTAQLLAGQQL----SPRCRDYVQAIND 479 Query: 633 SGNLVLDIVNDLLDISKIESG--KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG +L ++ND+LD S IE+G + L+ EP + + + A+ L + ++ + + + Sbjct: 480 SGESLLAVLNDVLDYSAIEAGSHSVALNDEPFAPRQLLDSALRLAEGRLQQRLLRLDHDY 539 Query: 691 ANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 A+ +P L D ++QI +N+L+NA+ FT G +I + + V+D+G G+ Sbjct: 540 ADVLPTWLQGDPCRIRQIVMNLLNNALRFTERG--VIRVSCGCDETHWWIAVQDSGCGID 597 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + +PF Q+ R GTGLGL + + + A +G + STP KG+ + P Sbjct: 598 PAQQTAIFQPFVQLSA----RRGGTGLGLAICRGLAQAMVGTLEVSSTPGKGSRFCLRLP 653 Query: 810 LYDTSHP 816 L P Sbjct: 654 LRRAVPP 660 >gi|224537981|ref|ZP_03678520.1| hypothetical protein BACCELL_02870 [Bacteroides cellulosilyticus DSM 14838] gi|224520387|gb|EEF89492.1| hypothetical protein BACCELL_02870 [Bacteroides cellulosilyticus DSM 14838] Length = 1474 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 122/237 (51%), Gaps = 6/237 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG-FSEVIKNQRFGPLGNPRYIEYAN 628 K+ + I +K S K F +SHE+RTPLT I G E+ +++ P G ++Y Sbjct: 930 KMKNDIYIEQKVSEMKIKFFTNISHELRTPLTLIKGPIQELREHETLSPKG----VQYVE 985 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 ++++ N +L +VN +LD KI++GKM LH + +E V ++ + E + Sbjct: 986 LMEKNTNQMLQLVNQILDFRKIQNGKMRLHVSLIDFNELVVSFQKEFRVLSEENEVSFTF 1045 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVILRVRDTGVG 747 + I AD + + NI+SNA FTPSGG I +++ E LRV D G+G Sbjct: 1046 QLPDAAIMIWADKEKLSIVIRNIISNAFKFTPSGGSIHVVAGLAEDGEHCFLRVEDNGIG 1105 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 + +L + + F Q N++ +GTG+GL L+K +V+ + G S KGT+ Sbjct: 1106 IPQNKLTEVFERFSQGENAKNSYYQGTGIGLALSKEIVNLHHGVIRAESPEGKGTVF 1162 >gi|188584124|ref|YP_001927569.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179347622|gb|ACB83034.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 686 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/256 (31%), Positives = 132/256 (51%), Gaps = 11/256 (4%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++ + L AK AE + KS FLA VSHE+RTPL I+G ++++ + PL Sbjct: 152 QDVTGRVEAARSLDEAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDT---PL 208 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 NP Y SG +L +V+ +LD S+IE+G+++L EP + V + L+ Sbjct: 209 -NPEQRTYVEAFRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPR 267 Query: 679 ANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS---N 734 A +K + I A+++ + + D V+QI +N+ NAI FT +GG + +S Sbjct: 268 AQDKGLEIALDIADDLTALRVGDADRVRQILVNLAGNAIKFTQAGG-VGVSLARAGEGQR 326 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E +L + DTG G+ + + F Q +S EGTGLGL + + +V+ G Sbjct: 327 EGFVLTIEDTGPGIPEERIPILFEEFEQGEDSAS--HEGTGLGLAITRRLVERMNGTIEA 384 Query: 795 FSTPAKGTLIEIIFPL 810 ST +G++ ++ PL Sbjct: 385 RSTVGRGSIFRVVLPL 400 >gi|259416961|ref|ZP_05740881.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] gi|259348400|gb|EEW60177.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] Length = 826 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 101/376 (26%), Positives = 194/376 (51%), Gaps = 23/376 (6%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQN 504 + ++E+ QL ++ + SD I + + + N A +++ GY ++D I ++P + N Sbjct: 309 RHQVELEQLSTVAQNASDSIILSGPDLRVFWVNDAFTRMTGYTIDDAIGKRPGDLL---N 365 Query: 505 TPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYSLTM---H 559 P + +I R + L + L TK+ + + ++ L + + + Sbjct: 366 GPETDPETIRDIAEHIARGERLHREILNYTKDGDTIWVDTNLVPVLNENGDMRMVIGIER 425 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++ K+ +L+ AK+ AE+ K++FLA +SHEIRTP+ IIG ++++ P Sbjct: 426 DVTSQKRNAVELAEAKRAAEEADRTKTEFLANMSHEIRTPMNGIIGMADLLSETAL-PEE 484 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD--EAVSEAISLVQL 677 +Y++ I S +L I+ND+LD++++ESGK++L EPV D + A+ +++ Sbjct: 485 QEQYVQI---IRTSSKALLKIINDILDLTRMESGKLSL--EPVDFDLERCIESAVDILRP 539 Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE 735 A EK + + ++A ++P+ + AD V+QI +N++ NA+ FT SG + + + Sbjct: 540 VAREKGLTLNVNYATDLPKSVRADDGRVRQILVNLVGNAVKFTASGRVDVRVLRAQSDPY 599 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + + V+D+G+GM+ +L F Q + GTGLGL +++ + G + Sbjct: 600 RLTIDVQDSGIGMSQAQLNNIFDRFSQADAATTRSFGGTGLGLTISRLLAQQMQGDITVH 659 Query: 796 STPAKGTLIEIIFPLY 811 S P +G+ F LY Sbjct: 660 SEPGQGS----CFSLY 671 >gi|89902167|ref|YP_524638.1| periplasmic sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] gi|89346904|gb|ABD71107.1| periplasmic sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] Length = 1202 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 77/259 (29%), Positives = 140/259 (54%), Gaps = 14/259 (5%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSE 608 L M +I +Q L A+++AE+ + KS +++ +SHE+RTPL +I+G+++ Sbjct: 700 LLMCEIESHRQTDEALQTARRVAEQARHAADQANQAKSRYISAISHELRTPLNSILGYAQ 759 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++ P+ + + + I R G +L ++ LDI+ IESGK+ L+ P+ + Sbjct: 760 LMGEDPSIPVHRQQAV---SVIKRGGEHLLSLIEGTLDIAHIESGKLTLNPRPMHFASLM 816 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIII 727 + SL +L A K + R +P ++ AD + V+QI +N+L NAI FT GQ+ Sbjct: 817 QDIASLFELEAQAKGLSFRYVEGAALPAVVRADEKRVRQILINLLGNAIKFTQK-GQVTF 875 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + + E ++ + DTG G++ EL + +PF + ++ G+GLGL +AK + D Sbjct: 876 DIRY-AREMAVIDIEDTGPGLSPQELNRIFEPFTR-AHTPGATASGSGLGLTIAKMLTDL 933 Query: 788 NMGKFYIFSTPAKGTLIEI 806 G+ + STP G++ ++ Sbjct: 934 MGGELTVTSTPGMGSVFKV 952 >gi|329851151|ref|ZP_08265908.1| sensory box protein [Asticcacaulis biprosthecum C19] gi|328839997|gb|EGF89569.1| sensory box protein [Asticcacaulis biprosthecum C19] Length = 680 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/261 (29%), Positives = 135/261 (51%), Gaps = 8/261 (3%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DI++ + + L AK+ AE KSDFL+ +SHEIRTPLT I+G++ ++K P Sbjct: 279 LEDITDQSRYEETLRTAKRDAEAHQQAKSDFLSNMSHEIRTPLTTILGYANLLKGVGDLP 338 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 YI I+++G +L ++ D+LD SK+E+G++ L +P L + + + Sbjct: 339 KDARHYI---GRINKAGEALLSLITDVLDFSKLEAGQVTLDPQPTDLRQLAGDVVDQFMA 395 Query: 678 YANEKRILIRTSFANNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + + I I + + P L D+R ++Q+ N++ NA FT G + T S+ Sbjct: 396 MTDTRNITIGFDYDDASPVWLEIDDVR-IRQVLYNLIGNACKFTHDG--YVAVTLAVSDG 452 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++ ++V+D+G G+T + + F Q+ NS + G+GLGL + +V G+ + Sbjct: 453 QLRVKVKDSGPGLTPEQRSRLFTRFNQVDNSINRKYGGSGLGLSICHEIVKLMQGRIGVE 512 Query: 796 STPAKGTLIEIIFPLYDTSHP 816 S +G+ P+ T P Sbjct: 513 SEAGQGSTFWFEIPVVPTEAP 533 >gi|320038754|gb|EFW20689.1| sensor histidine kinase/response regulator [Coccidioides posadasii str. Silveira] Length = 2340 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 127/232 (54%), Gaps = 11/232 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ + + H K+ E+ + KS FLA +SH++RTP+T +IG SE++K + + Sbjct: 1861 KEAEAEARHNVKLKEEAAKAKSIFLANISHDLRTPMTGVIGLSELLKQTNL----DRQQD 1916 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 Y I + +L ++ND+LD SK+E+GKM + P++L + ++E + ++ Y + R Sbjct: 1917 VYVESIRVCADTLLTLINDILDFSKLEAGKMKVSTVPLNLRQTIAEVVRALR-YTHRDRG 1975 Query: 685 LIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVI 738 L ++I +L D + QI +N+LSN+ FTP G + + +E V Sbjct: 1976 LETIEDLDDIAPDLLVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVRAKVAEEDETTIRVT 2035 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 V DTG+G++N L + +PF Q +S G+GLGL + KA+++ +G Sbjct: 2036 CIVADTGIGISNEHLARLFRPFSQADSSTARSYGGSGLGLSICKAIIEEVLG 2087 >gi|20198952|gb|AAK54091.2|AF362372_1 histidine kinase DhkJ [Dictyostelium discoideum] Length = 2062 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 85/249 (34%), Positives = 133/249 (53%), Gaps = 13/249 (5%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 KN L AK+ AE S KSDF+A +SHEIRTP+ IIG +++ + EY Sbjct: 1332 KNTL--AKETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTEL----TAEQREYL 1385 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + + S +L I+ND+LD SKIE+G++ L SL + +A+ + A++K I + Sbjct: 1386 SMVQSSAGSLLTIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKTLSWRAHQKCIELV 1445 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHT-SNEEVILR--VR 742 A+++P ++ D ++QI N++ NAI FT G +++ + S EV+L+ V Sbjct: 1446 CDIASDVPDSLIGDPGRLRQIVNNLVGNAIKFTSQGEVDLVVKVEKSLSCGEVVLKFSVI 1505 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ +L + F Q S R GTGLGL ++ +V+ GK + S KG+ Sbjct: 1506 DTGIGIPKDKLHLIFEAFSQADGSITRRYGGTGLGLTISTRLVELMKGKLSVVSKSGKGS 1565 Query: 803 LIEII--FP 809 E FP Sbjct: 1566 TFEFTAQFP 1574 >gi|86748376|ref|YP_484872.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] gi|86571404|gb|ABD05961.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] Length = 1122 Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/265 (31%), Positives = 141/265 (53%), Gaps = 10/265 (3%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 +L M +I +Q +L AK++AE + KS ++ +SHE+R+PL AI G++++++ Sbjct: 643 TLLMQEIDAHRQTDAELQRAKEVAESANLAKSRYVVGLSHELRSPLNAISGYAQLLEQDA 702 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P PR + + RS + + +++ LLDISKIE+G++ L + V E + + + + Sbjct: 703 SLP---PRPRDQIRLMRRSADHLSGLIDGLLDISKIEAGRLYLSRDEVRFGEFLDQLVGM 759 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +L A K + +P ++ AD + ++Q+ +N+LSNAI FT G I H Sbjct: 760 FRLQATAKDVDFVFKRPQYLPPVVYADEKRLRQVLINLLSNAIKFTQEGSVHFI--VHYR 817 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPF--GQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 N L VRDTG G+ +LE+ PF G + SQ GTGLGL ++K + G Sbjct: 818 NPVAELEVRDTGPGIHADDLERIFAPFERGALGVSQP--HTGTGLGLTISKLLAGVMGGD 875 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHP 816 + ST +G+ + L + ++P Sbjct: 876 LSVTSTLGQGSTFRVKLLLSEVTNP 900 >gi|310829270|ref|YP_003961627.1| two-component system sensor histidine kinase [Eubacterium limosum KIST612] gi|308741004|gb|ADO38664.1| two-component system sensor histidine kinase [Eubacterium limosum KIST612] Length = 1091 Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 99/306 (32%), Positives = 149/306 (48%), Gaps = 19/306 (6%) Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNK----LSHAKKIA 578 +E LG E +SL +I P+S + M + E + EK + L A A Sbjct: 514 MEMQMLGDDGEYHWISLYVIRVDNPYSDDMLVIGLMKVLDEQRAEKARQERLLRDALTSA 573 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E + KS+FL+R+SH+IRTP+ AIIG S + + + P R + ID S +L Sbjct: 574 EAANKAKSEFLSRMSHDIRTPMNAIIGMSTIGQLKAGAP---NRVRDCFEKIDSSSRYLL 630 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI- 697 ++ND+LD+SKIESGK+ L E ++E +++ E+ I + R Sbjct: 631 TLINDILDMSKIESGKIVLAKRKFDFSEFINEINTIIYPQTRERGIDFVVHHHEPMERFY 690 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI----LRVRDTGVGMTNYEL 753 + D + QI +N+LSNA+ FT GG+I + E + L V DTG+GM+ + Sbjct: 691 IGDELRLNQIMMNLLSNAVKFTTPGGRITVDIRELKRENGLAYLGLSVSDTGIGMSEEFM 750 Query: 754 EKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL-- 810 +K +PF Q N R + GTGLGL + ++ G + S GT E+ PL Sbjct: 751 KKIYQPFEQ-ENPGTARNKIGTGLGLSIVYNIIQLMGGTIAVTSEKNCGTTFELSVPLEP 809 Query: 811 -YDTSH 815 YDT Sbjct: 810 VYDTEE 815 >gi|300718124|ref|YP_003742927.1| Signal transduction histidine-protein kinase [Erwinia billingiae Eb661] gi|299063960|emb|CAX61080.1| Signal transduction histidine-protein kinase [Erwinia billingiae Eb661] Length = 908 Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 81/238 (34%), Positives = 136/238 (57%), Gaps = 10/238 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + +K PL N +Y + Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKT----PL-NITQRDYLH 332 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS N +L I+ND+LD SK+E+GK+ L P L + + E + L+ A+EK + + Sbjct: 333 TIERSANNLLSIINDVLDFSKLEAGKLVLETIPFPLRDTLDEVVVLLAQSAHEKGLELTL 392 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDT 744 S +P + D ++QI +N+L NAI FT G +I + + T+ + +++ DT Sbjct: 393 SIQPEVPDNTIGDPLRLQQIIINLLGNAIKFTERGNIDIRIELRSLSTNRVNLEVQIHDT 452 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G++ + + + F Q S R GTGLGL + + +V+ G+ + S +G+ Sbjct: 453 GIGISEKQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISLHSRMNQGS 510 >gi|254884267|ref|ZP_05256977.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|319640651|ref|ZP_07995367.1| sensor protein [Bacteroides sp. 3_1_40A] gi|254837060|gb|EET17369.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|317387714|gb|EFV68577.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 1467 Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 123/236 (52%), Gaps = 6/236 (2%) Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIG-FSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 I +K S K F +SHE+RTPLT I G E+ + ++ G ++Y + ++++ Sbjct: 932 IEQKLSELKIKFFTNISHELRTPLTLIQGPIQELKEKEKLSQKG----MQYVDLMEKNTK 987 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L +VN +LD KI++GKM LH +L+E V ++ A E + A Sbjct: 988 QMLQLVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDI 1047 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELE 754 + AD V + NI+SNA FTP+GG I ++ + ++ +RV D+GVG+ +L Sbjct: 1048 MVWADKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDDDRHCYVRVEDSGVGIPQSKLS 1107 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + F Q N++ +GTG+GL L+K ++ + G+ Y S KG + I L Sbjct: 1108 EIFERFSQADNARGAYYQGTGIGLALSKEIISLHHGEIYAESPEGKGAVFTIELQL 1163 >gi|228903105|ref|ZP_04067241.1| hypothetical protein bthur0014_42710 [Bacillus thuringiensis IBL 4222] gi|228967685|ref|ZP_04128705.1| hypothetical protein bthur0004_44770 [Bacillus thuringiensis serovar sotto str. T04001] gi|228792018|gb|EEM39600.1| hypothetical protein bthur0004_44770 [Bacillus thuringiensis serovar sotto str. T04001] gi|228856514|gb|EEN01038.1| hypothetical protein bthur0014_42710 [Bacillus thuringiensis IBL 4222] Length = 558 Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 101/376 (26%), Positives = 182/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ +L++ Sbjct: 211 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEE--------YLDRLYYE 262 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 +H TEI+ L +E+I + K K + L + I++ F Sbjct: 263 SFHH--TEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 315 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 316 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 359 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + + + Sbjct: 360 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHM 418 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+GG + + Sbjct: 419 VLDNKAGEKEISLQVNVLKR-ASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDK 477 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 478 YNAYI-KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTIT 536 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 537 VDSEVGEGTTFTVVLP 552 >gi|189404980|ref|ZP_02812506.2| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str. EC869] gi|261227155|ref|ZP_05941436.1| hybrid sensory histidine kinase TorS [Escherichia coli O157:H7 str. FRIK2000] gi|261255731|ref|ZP_05948264.1| hybrid sensory histidine kinase TorS [Escherichia coli O157:H7 str. FRIK966] gi|189372752|gb|EDU91168.1| TMAO reductase system sensor TorS [Escherichia coli O157:H7 str. EC869] Length = 904 Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 85/250 (34%), Positives = 136/250 (54%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+N++LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNNILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT GQI++ + T E+ ++ V D+G Sbjct: 535 TAIADDVPTALMGDPRRIRQVITNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFIQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|167576610|ref|ZP_02369484.1| two-component system sensor protein [Burkholderia thailandensis TXDOH] Length = 926 Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 132/263 (50%), Gaps = 8/263 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DIS K+ + KL A+ +++ + KS FLA +SHEIRTPL AIIG E+++ + Sbjct: 418 TLLDISMRKESELKLKEARIASDQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSQL- 476 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + E ++ N +L I+ND+LD+SK+ESG+M L P + + E + Sbjct: 477 ---SNQQSERLQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIQALLQEIVDAYA 533 Query: 677 LYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGG---QIIISTTHT 732 A K + + ++ + R + D ++QI N++ NAI FT G + + Sbjct: 534 PLAESKGLQLLSNLGEGVARYYSGDPARIRQILSNLIGNAIKFTERGHISVDVHQAKAAQ 593 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + + + V DTG+G+ + + Q S R G+GLGLPL K + G Sbjct: 594 GDSAIEIWVNDTGIGIRPDRIATLFDVYTQADTSIHRRFGGSGLGLPLCKRLATIMGGSI 653 Query: 793 YIFSTPAKGTLIEIIFPLYDTSH 815 + S P GT + ++ PL + H Sbjct: 654 EVDSLPDFGTTVTVVLPLREARH 676 >gi|117926233|ref|YP_866850.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609989|gb|ABK45444.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1202 Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 82/257 (31%), Positives = 133/257 (51%), Gaps = 10/257 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS+ K+ +++L A AE + KS+FLA +SHEIRTP+ ++G E++ N Sbjct: 517 DISDRKRVEDELKKAMLDAESANRSKSEFLANMSHEIRTPMNGVVGMMELLSNTEL---- 572 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV-QLY 678 P + S +L I+ND+LD SKIE+GK+ L L E V + +L+ Q Sbjct: 573 TPEQQSHMRTARNSAESLLTIINDILDFSKIEAGKLELEEIAFDLAELVEDVTALLAQRV 632 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 +EK L+ + A+ ++ D ++Q+ +N++ NA+ FTP G + T + + Sbjct: 633 DSEKLELLHNAPADLPMQVAGDPTRLRQVLVNLVGNAVKFTPEGEVEVRMTVERQDADTV 692 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V+ VRDTG+G+ + + F Q S R GTGLGL ++K +V+ G+ Sbjct: 693 TVLTEVRDTGIGIDEAVRPRLFRMFTQADGSTTRRFGGTGLGLAISKQLVELMGGEVGFS 752 Query: 796 STPAKGT--LIEIIFPL 810 S +G+ I FP+ Sbjct: 753 SVMGQGSTFWFRITFPI 769 >gi|222082719|ref|YP_002542084.1| two-component sensor histidine kinase/response regulator hybrid protein [Agrobacterium radiobacter K84] gi|221727398|gb|ACM30487.1| two-component sensor histidine kinase/response regulator hybrid protein [Agrobacterium radiobacter K84] Length = 777 Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 99/352 (28%), Positives = 178/352 (50%), Gaps = 14/352 (3%) Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 GI ++++G ++S N ++ GY ++I+ + F+ F Q + E D R Sbjct: 288 GIFGLDQQGRVVSWNAGAERIKGYTADEIIGEHFSRFYPQEVRDTLPSQELERAQADGR- 346 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAE 579 +E K+ +++ L + +S DI++ K+ + +L A+ AE Sbjct: 347 -VEDEGWRVRKDGSRFWANVVVTALHDENGNPRGFSKITRDITDRKRNEEELLAARYKAE 405 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 + S +S F +R+SHE RTPL +I+GF+++++ L P I R+G +L Sbjct: 406 QASEARSAFHSRLSHEFRTPLNSILGFAQILEMD----LDEPDAQASLAQILRAGRHLLS 461 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR--ILIRTSFANNIPRI 697 +++DLLD+++I++G+M L+ E + E V EA+ L + A ++ I++ A + Sbjct: 462 LLDDLLDLARIDAGRMELYIETLDAGEIVGEAVDLARPLAAPRKVGIVVEVDHAAGAA-V 520 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D R Q+ LN+LSNAI F GG + IST + + + + DTG G+ + E+ Sbjct: 521 TVDRRRFLQVLLNLLSNAIKFNREGGGLRISTRLVDGDMLAIDISDTGFGIAPNKKERLF 580 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +PF ++ GTGLGL L++ ++ A G+ + ST +GT + P Sbjct: 581 QPFERLGADSNAT-SGTGLGLALSQHLMQAMGGRLELGSTGTEGTTFTVFAP 631 >gi|126658998|ref|ZP_01730139.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] gi|126619655|gb|EAZ90383.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] Length = 881 Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 80/281 (28%), Positives = 143/281 (50%), Gaps = 21/281 (7%) Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 T+ ++L L I+I L D+ + + + + +++ E+ + KS+FLA + Sbjct: 192 TQRDELHQLEILIATL------GQYFQDLQDLQTKMAQQKASEQALEELNRAKSEFLAMI 245 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 HEIRTPL A+ G + ++ + + N + E+ + I SG +L ++N++LD SKIE+ Sbjct: 246 GHEIRTPLNAVTGMTGLLLDTQL----NDQQKEFVSIIRNSGENLLTMINNILDFSKIEA 301 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNI 711 K+ L +P L + E + L A++K + + +N P I+ D +KQI N+ Sbjct: 302 QKLELEEQPFELGPCIEEVLRLFVSQASKKNLELAYLIESNTPSAIIGDSTRLKQILANL 361 Query: 712 LSNAIHFTPSGGQIII----------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 + NA+ FT G +I + S E+ V+DTG+G+ + + +PF Sbjct: 362 IGNAVKFTKKGEVVIYVNATPIKSRQDSKQNSRYELRFAVKDTGIGIPSDRCNRLFQPFS 421 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 Q+ S + GTGLGL ++K + + G ++ ST KG+ Sbjct: 422 QVDASTTRKYGGTGLGLAISKGLSELMGGNMWVHSTEGKGS 462 >gi|118591464|ref|ZP_01548861.1| two-component sensor/response regulator hybrid [Stappia aggregata IAM 12614] gi|118435792|gb|EAV42436.1| two-component sensor/response regulator hybrid [Stappia aggregata IAM 12614] Length = 808 Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 75/259 (28%), Positives = 132/259 (50%), Gaps = 10/259 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D++E + + +L A+ AE + KS FLA VSHEIRTPL ++G + ++++ R Sbjct: 270 VLRDVTERRLIEEELLAARHSAESSNEAKSRFLATVSHEIRTPLNGVLGMAALLRDTRL- 328 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 Y ++ SG +L +++++LD SK+E+GK+++ PV + V + L+ Sbjct: 329 ---TKEQSAYIEALETSGETLLLLIDEVLDFSKVEAGKLDIQAAPVRVGALVESVVELLA 385 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A+ K + I + N+P + D V+QI N++ N I FT GG + + T SN Sbjct: 386 PKAHAKSLEIGSMLDPNLPEEVTLDATRVRQILYNLIGNGIKFTDEGG-VAVELTGRSNP 444 Query: 736 E----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + + VRD+G+G E E+ + F Q+ + + GTGLGL +A+ + G+ Sbjct: 445 DGGGFLDIDVRDSGIGFDEQEAERLFQEFEQVDHGPARKFGGTGLGLAIAQRLAGLMGGE 504 Query: 792 FYIFSTPAKGTLIEIIFPL 810 G + P+ Sbjct: 505 IAAQPAGDGGAQFRVSLPI 523 >gi|86747539|ref|YP_484035.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] gi|86570567|gb|ABD05124.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] Length = 649 Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 116/233 (49%), Gaps = 5/233 (2%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E + KS LA SHEIRTPL IIG S ++ + P YA + SG+ + Sbjct: 127 EDATRRKSRLLAMASHEIRTPLNGIIGMSGLLLDTAL----TPEQATYARAVKTSGDALA 182 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RI 697 ++++LLD S+IE+G+ L P +L + + + L+ A + I + +P R+ Sbjct: 183 TLIDELLDYSRIEAGRFELDSRPFALTALIEDIVELLAPRAQAGALEIAADIDDRVPSRV 242 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 + D ++Q+ LN+ NAI FT GG ++I + E+ VRDTG+G+ + Sbjct: 243 IGDAARLRQVLLNLAGNAIKFTSVGGVVLIVQPGERDGEISFAVRDTGIGIAREAQTRIF 302 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F Q + GTGLGL +++ +V+ G+ + S P +G+ PL Sbjct: 303 GEFEQADDGIARSFGGTGLGLSISQRIVERMGGRIALDSQPGRGSTFTASIPL 355 >gi|91793353|ref|YP_563004.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans OS217] gi|91715355|gb|ABE55281.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella denitrificans OS217] Length = 856 Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 96/359 (26%), Positives = 174/359 (48%), Gaps = 26/359 (7%) Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-QNTPSVMNHYLTEILSLDLRQ 523 I +I+ +G N++ L GY +E++L PF FL ++ S M+ ++ Q Sbjct: 489 ICLISADGYFKQVNQSWCNLLGYNMEELLNTPFADFLHPEDRASGMDE-------MNKLQ 541 Query: 524 T--LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 T + + +K + + + + +EKN+ ++ EK Sbjct: 542 TPGYRTVNFDNRYRDKSGAYHWFQWNAVLNHGNDIIYASARDVTKEKNQQQFLQQTNEKM 601 Query: 582 ----------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 KS F+A +SHE+RTPL +IIGFS V+ G L + +++ I Sbjct: 602 RLVNTKLQQLDGLKSMFIATMSHELRTPLNSIIGFSSVMLQGLSGQLTGVQ-VDHLTRIH 660 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 ++ +L I++D++D+SKIE+ + + E L E E I+L + + +I + + Sbjct: 661 KASQHLLTIISDIIDVSKIEAERFDSANESFYLHEVAQEVITLAHGLSMQYKIAVVMVIS 720 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 + + DLR VKQ+ LN++SNAI ++ G I ++ N +++ V D G+G+ Sbjct: 721 QELI-LFTDLRRVKQVLLNLVSNAIKYSLQGQVTITASVEGLN--ILMSVIDQGIGIREQ 777 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN-MGKFYIFSTPAKGTLIEIIFP 809 ++ KPF ++ ++ ++ GTGLGL L K +VD +G + S+ G+ E+I P Sbjct: 778 DIPALFKPFSRL-DAMRVERSGTGLGLYLTKKIVDGILLGSITVTSSVGVGSRFEVIIP 835 >gi|83592613|ref|YP_426365.1| Hpt sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC 11170] gi|83575527|gb|ABC22078.1| Hpt sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC 11170] Length = 811 Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 104/382 (27%), Positives = 183/382 (47%), Gaps = 40/382 (10%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R R + E + + E+ +D + +IN G + + NR+ L G+ P + Sbjct: 155 RERNRDLVNEKNKYLTAFESLTDPVFLINDAGGLENLNRSAGILIGFGP-----SPGAGY 209 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP----------- 549 P + ++L+ + +K E + R+ + P Sbjct: 210 YGSGIPPSAQRLVDDLLA----RFAQKAAEAEGAESDRIDYRMDTVEGPRDFEVRRQAML 265 Query: 550 -FSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 S YS L DI+ +K+ ++ AE+ + KS FLA +SHEIRTP+ I+G Sbjct: 266 DVSERYSGQVLIFSDITAYKRASDR-------AEEANQAKSTFLATMSHEIRTPINGILG 318 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 S +++++ L + R +A+ I S ++L +VND+LD +KIE+G ++L S++ Sbjct: 319 LSTLMRDE----LRDERLRHHADAIALSAEMLLSMVNDVLDFTKIEAGILDLDPVDFSVE 374 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG- 723 E ++ +LV A+ K + + S + +P R+ DL ++Q+ LN+ SNA+ FT +G Sbjct: 375 ELLNGVFALVAPSAHRKGLEVYRSVSPAVPERLHGDLAKLRQVLLNLFSNAVKFTHAGAL 434 Query: 724 QIIISTTHTSNE-EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 I I + E +VIL V DTG+G+ L+ +PF Q S R GTG+GL + Sbjct: 435 SIHIDRLAEAPEGKVILHITVDDTGIGIAPSALKAIFEPFAQADGSISRRFGGTGMGLAI 494 Query: 781 AKAMVDANMGKFYIFSTPAKGT 802 + + + G+ + S +G+ Sbjct: 495 NRRLAEVMGGEVWAESREGEGS 516 >gi|257865289|ref|ZP_05644942.1| histidine kinase [Enterococcus casseliflavus EC30] gi|257871617|ref|ZP_05651270.1| histidine kinase [Enterococcus casseliflavus EC10] gi|257874889|ref|ZP_05654542.1| histidine kinase [Enterococcus casseliflavus EC20] gi|257799223|gb|EEV28275.1| histidine kinase [Enterococcus casseliflavus EC30] gi|257805781|gb|EEV34603.1| histidine kinase [Enterococcus casseliflavus EC10] gi|257809055|gb|EEV37875.1| histidine kinase [Enterococcus casseliflavus EC20] Length = 613 Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 99/394 (25%), Positives = 185/394 (46%), Gaps = 28/394 (7%) Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 ++ Q E Q G E+ + ME E +L S+L +DG+ +R G +++ N Sbjct: 235 DELGQLAETFNQLGERIEET-----QEAMESERNRLDSVLSHMTDGVVATDRRGKVITIN 289 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 L E+ + + LE + + L + L + +T T Sbjct: 290 EMAMSLLNVSNEEAIGQSILTLLEIDEEYTLRKLLENPEDMLLERPSNDLT--GTNMILR 347 Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 + +I ++ F S MHD++E QEKN+ + +F++ VSHE+RT Sbjct: 348 IDFSMIRRESGFISGLVAVMHDVTE--QEKNE------------QERREFVSNVSHELRT 393 Query: 599 PLTAIIGFSEVIKNQRF-GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 PLT++ + E + + P P +++ +D + ++ ++NDLL +S+++SG L Sbjct: 394 PLTSMRSYIEALSEGAWKDPEIAPNFLKVT--LDETDRMI-RMINDLLSLSRMDSGNSQL 450 Query: 658 HFEPVSLDEAVSEAISLVQLYA-NE-KRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 E ++ +E V+ + + NE K+ LIR F + D + Q+ NI++NA Sbjct: 451 QLEYINFNEMVNFVLDRFDMMVTNESKKYLIRREFTKRELWVEVDTDKMIQVIDNIMNNA 510 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 I ++P GG I + T N ++L + D G+G+ +L K F ++ ++ + GTG Sbjct: 511 IKYSPDGGIITVKLMETHNN-IVLSINDQGLGIPKKDLTKIFDRFYRVDKARARQQGGTG 569 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 LGL +++ ++ A+ G + S +G+ I+ P Sbjct: 570 LGLAISREVIKAHGGAIWAESRENRGSTFYIMLP 603 >gi|239624048|ref|ZP_04667079.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522079|gb|EEQ61945.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 876 Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 90/258 (34%), Positives = 132/258 (51%), Gaps = 11/258 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D +E + + L A AE+ + KS+FL+R+SHEIRTPL AIIG + + Sbjct: 335 DRTEEVRSRQALQEAMMSAERANMAKSEFLSRMSHEIRTPLNAIIGLTTIAAAS---IRD 391 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + I S +L ++ND+LD+SKIES KM L EP + E V+ +S V A Sbjct: 392 TAKAEDCLAKITFSSKHLLMLINDVLDMSKIESSKMVLQDEPFDIFELVNGFVSTVYAQA 451 Query: 680 NEKRILIRTS---FANNIPRILADLRSVKQIALNILSNAIHFTPSGG--QIIISTTHTSN 734 EK I R + F + I LR + QI LN+ SNA+ FT GG ++ +S N Sbjct: 452 KEKGIEFRETMEGFGEDTVFIGDSLR-LNQILLNLSSNAVKFTAPGGCIRLEVSRHRNGN 510 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 +LR + DTG+GMT +E+ +PF Q + R GTGLG+ + + ++ G+ Sbjct: 511 AADVLRFILSDTGIGMTKDAMERIFQPFEQADATISKRYGGTGLGMSITRNLITLMGGQI 570 Query: 793 YIFSTPAKGTLIEIIFPL 810 I S GT + P Sbjct: 571 QIESESGVGTTCIVDIPF 588 >gi|83717305|ref|YP_438343.1| two-component system sensor protein [Burkholderia thailandensis E264] gi|83651130|gb|ABC35194.1| two-component system sensor protein [Burkholderia thailandensis E264] Length = 952 Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 132/263 (50%), Gaps = 8/263 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DIS K+ + KL A+ +++ + KS FLA +SHEIRTPL AIIG E+++ + Sbjct: 444 TLLDISMRKESELKLKEARIASDQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSQL- 502 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + E ++ N +L I+ND+LD+SK+ESG+M L P + + E + Sbjct: 503 ---SNQQSERLQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIQALLQEIVDAYA 559 Query: 677 LYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGG---QIIISTTHT 732 A K + + ++ + R + D ++QI N++ NAI FT G + + Sbjct: 560 PLAESKGLQLLSNLGEGVARYYSGDPARIRQILSNLIGNAIKFTERGHISVDVHQAKAAQ 619 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + + + V DTG+G+ + + Q S R G+GLGLPL K + G Sbjct: 620 GDSAIEIWVNDTGIGIRPDRIATLFDVYTQADTSIHRRFGGSGLGLPLCKRLATIMGGSI 679 Query: 793 YIFSTPAKGTLIEIIFPLYDTSH 815 + S P GT + ++ PL + H Sbjct: 680 EVDSLPDFGTTVTVVLPLREARH 702 >gi|332142374|ref|YP_004428112.1| histidine kinase response regulator hybrid protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327552396|gb|AEA99114.1| histidine kinase response regulator hybrid protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 542 Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 131/232 (56%), Gaps = 4/232 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ S +SDFL+ VSHEIRTPL AI FS +++ + + +++ +SG +L Sbjct: 168 ERTSQFRSDFLSYVSHEIRTPLNAINTFSRLLEGEAQKLKLPESFTTPLSHVTQSGERLL 227 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +IVN +LDI +IE+GKM + VS + + SL ++ A + I ++ + +P L Sbjct: 228 EIVNSVLDIKQIEAGKMRVMPRAVSTHDFFTHLFSLTKIRAEDGGITFTSTIDSRVPDTL 287 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D Q++LN+LSNAI FT + G+ + + N+++I V D G+G++ + ++ Sbjct: 288 FFDDTKFGQVSLNLLSNAIKFT-NPGKSVNAQVKYKNDKLIFNVIDQGIGISEEDQKRLF 346 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 PF ++ N+ QI GTGLGL ++K +++ G + S +GT I + P Sbjct: 347 TPFERMENAHQI--SGTGLGLNISKRLIELMDGTIKVSSKVNEGTRISVTLP 396 >gi|317470855|ref|ZP_07930236.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA] gi|316901682|gb|EFV23615.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA] Length = 1062 Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 134/243 (55%), Gaps = 13/243 (5%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EY 626 + L A + A+K + KS FLA++SH+IRTP+ AI+G + + ++ + +P + E Sbjct: 661 RKALLAAYEAAKKANEAKSSFLAQMSHDIRTPMNAIMGMTSIAASR----INDPEKVREC 716 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--RI 684 ID S + +LD++N++LD+SKIE GK+ L EP L E +++ S+ + A +K + Sbjct: 717 LTKIDMSSSHLLDLINEILDMSKIEKGKIELTEEPFCLRELITDINSITRPEALQKGQEL 776 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EVIL 739 L RT + + D ++Q+ +N+++NA+ +T +GG+II+ + + Sbjct: 777 LFRTVDVVHTD-FIGDAGRIRQVLINLITNAVKYTQNGGRIIVEVQEVTGRTPGAASFVF 835 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V D G+GM L PF + +S+ R +GTGLG+ +A+ +V A G S Sbjct: 836 TVEDNGIGMDPDFLNYIFVPFSRADDSKVRRVQGTGLGMSIAQGIVSAMNGNIQAESRKG 895 Query: 800 KGT 802 +G+ Sbjct: 896 QGS 898 >gi|229152783|ref|ZP_04280966.1| hypothetical protein bcere0011_43150 [Bacillus cereus m1550] gi|228630603|gb|EEK87249.1| hypothetical protein bcere0011_43150 [Bacillus cereus m1550] Length = 558 Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 101/376 (26%), Positives = 181/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ L + + Sbjct: 211 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEEYLDRLYY--------E 262 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 +H TEI+ L +E+I + K K + L + I++ F Sbjct: 263 SFHH--TEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 315 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 316 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 359 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + + + Sbjct: 360 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHM 418 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+GG + + Sbjct: 419 VLDNKAGEKEISLQVNVLKR-ASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDK 477 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 478 YNAYI-KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTIT 536 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 537 VDSEVGEGTTFTVVLP 552 >gi|254489970|ref|ZP_05103165.1| hypothetical protein MDMS009_301 [Methylophaga thiooxidans DMS010] gi|224465055|gb|EEF81309.1| hypothetical protein MDMS009_301 [Methylophaga thiooxydans DMS010] Length = 1177 Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 107/375 (28%), Positives = 183/375 (48%), Gaps = 33/375 (8%) Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYP--------VEDILRKPFTVFLEQNTP 506 +++E + D I ++ EG I N A + P +EDIL L +N Sbjct: 370 SALIEGSKDAILTLSTEGKIQDWNEATYHVLKLPPFDITDRQLEDILDSDERALLTENIA 429 Query: 507 SVMNHYLTEILSLDLRQT-----LEKITLGSTKEEK--LLSLRIIIKKLPFSSCYSLTMH 559 + + T L +D + ++L ++K ++ II+ + + Sbjct: 430 ACLAGKSTATLDIDYHTSNGDLLALSVSLSPIHKDKQTIIGASTIIRDITEQILDKKQLE 489 Query: 560 DISEWKQEK-----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 +++ +E+ +L AK A + S+ KS F+A VSHEIRTPL I+G ++K + Sbjct: 490 NLNSSLEEQVRTRTEELEKAKNEAIEASNMKSGFVANVSHEIRTPLNGILGMHNLLKREN 549 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 N + Y +S +L ++ND+LD+SKIE+GK+ + P++L ++ S+A + Sbjct: 550 L----NEKQESYLQMATQSAKSLLMLINDILDLSKIEAGKLEIESLPINLIDSFSQAANS 605 Query: 675 VQLYANEKRILIRTSFAN--NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + + A +K + I A+ + I DLR ++QI N++SNAI FT G+II+S T Sbjct: 606 MAVRAMDKNVEIVLDLADIKHTVVIGDDLR-IRQILNNLISNAIKFTDK-GEIIVSAATT 663 Query: 733 ---SNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + VIL V+DTGVG+ +L + K F Q +S + GTGLGL + + Sbjct: 664 EDVAGARVILDVSVQDTGVGIDKAKLNQLFKAFSQEDSSTTRKYGGTGLGLSIVSNLCSL 723 Query: 788 NMGKFYIFSTPAKGT 802 G+ ++ S G+ Sbjct: 724 MNGECHVESEKNVGS 738 >gi|189424182|ref|YP_001951359.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189420441|gb|ACD94839.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 770 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 81/246 (32%), Positives = 137/246 (55%), Gaps = 12/246 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA-- 627 +L+ AK+ AE + KSDFL+ +SHE+RTPL AI+G++++++ N I+ Sbjct: 295 ELTIAKEQAESANRAKSDFLSSMSHELRTPLNAILGYAQILRLH-----NNLSDIQRQQL 349 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + + SG +L ++ND+LD+ KIE+ KM++ L +++ +L +L A EK + Sbjct: 350 DIMRNSGEHLLTLINDILDVGKIEANKMDVEDAVFDLPALIAQVFNLTKLQAEEKELQFH 409 Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VRDT 744 +P + D R ++QI LN+LSNA+ +T G + + ++ + + R V DT Sbjct: 410 YEPETPLPAYVHGDERKLRQILLNLLSNAVKYTRR-GSVTMRVSYGRAGDGLFRCEVADT 468 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ +L +PF Q+ N +Q R EGTGLGL + K ++ G + S P KG+ Sbjct: 469 GIGIPADKLGVIFEPFTQLTNDRQGR-EGTGLGLNITKRLLTLIQGTMGVESIPGKGSTF 527 Query: 805 EIIFPL 810 + PL Sbjct: 528 WLEVPL 533 >gi|111226686|ref|XP_642053.2| histidine kinase [Dictyostelium discoideum AX4] gi|122126078|sp|Q54YZ9|DHKJ_DICDI RecName: Full=Hybrid signal transduction histidine kinase J gi|90970717|gb|EAL68114.2| histidine kinase [Dictyostelium discoideum AX4] Length = 2062 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 85/249 (34%), Positives = 133/249 (53%), Gaps = 13/249 (5%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 KN L AK+ AE S KSDF+A +SHEIRTP+ IIG +++ + EY Sbjct: 1332 KNTL--AKETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTEL----TAEQREYL 1385 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + + S +L I+ND+LD SKIE+G++ L SL + +A+ + A++K I + Sbjct: 1386 SMVQSSAGSLLTIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKTLSWRAHQKCIELV 1445 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHT-SNEEVILR--VR 742 A+++P ++ D ++QI N++ NAI FT G +++ + S EV+L+ V Sbjct: 1446 CDIASDVPDSLIGDPGRLRQIVNNLVGNAIKFTSQGEVDLVVKVEKSLSCGEVVLKFSVI 1505 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ +L + F Q S R GTGLGL ++ +V+ GK + S KG+ Sbjct: 1506 DTGIGIPKDKLHLIFEAFSQADGSITRRYGGTGLGLTISTRLVELMKGKLSVVSKSGKGS 1565 Query: 803 LIEII--FP 809 E FP Sbjct: 1566 TFEFTAQFP 1574 >gi|71282062|ref|YP_271129.1| sensor histidine kinase/response regulator [Colwellia psychrerythraea 34H] gi|71147802|gb|AAZ28275.1| sensor histidine kinase/response regulator [Colwellia psychrerythraea 34H] Length = 982 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 124/232 (53%), Gaps = 6/232 (2%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 EK + KS FLA +SHEIRTPLTAI+G +E I + + + E I + +L Sbjct: 484 EKANQVKSQFLANMSHEIRTPLTAIVGHAEAIIH---DDIDKDKVHEDIEVIHGNSLHLL 540 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++ND+LD+S+IE+ K L +P+ L E + + A +K++ P I+ Sbjct: 541 ELINDILDLSRIEANKFELEVQPLDLAELIQDLSHTFTSQAQQKQLDFTIEHQLPAPFII 600 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D +KQI LN+ +NAI FT S GQ+++S T EE++ V DTG+G++ L + Sbjct: 601 HIDSLRLKQILLNLCANAIKFTES-GQVMLSITQ-QKEELVFTVTDTGIGLSEEHLAQVF 658 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q NS R G+GLGL L+ + +G + S KG+ + P Sbjct: 659 EIFTQADNSISRRFGGSGLGLTLSNQLAKLMLGNIEVTSELGKGSCFCLTLP 710 >gi|257458984|ref|ZP_05624103.1| sensor histidine kinase/response regulator [Campylobacter gracilis RM3268] gi|257443369|gb|EEV18493.1| sensor histidine kinase/response regulator [Campylobacter gracilis RM3268] Length = 1517 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 128/241 (53%), Gaps = 16/241 (6%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 +++ K AE + KS FLA +SHEIRTPL IIGF+E++KN + +Y + I Sbjct: 394 IAYQKGAAEDANKAKSIFLANMSHEIRTPLNGIIGFTELLKNTDL----DEEKRDYVDTI 449 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRILIR 687 ++S +L I+N++LD+SKIES K+ L F P+ E+ A+ + A EK I I Sbjct: 450 EKSSENLLTIINNILDVSKIESNKVELEDILFNPIQDFES---AVEIYVAKAAEKNIDIL 506 Query: 688 TSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRV 741 + + D+ +K++ +N++SNA+ FTP G I++ ++ V V Sbjct: 507 LYIDPTLVHHLYGDITKIKEVLINLMSNAVKFTPEHGTIVVEILREPSKAPGEAIVTFSV 566 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G++ +L F Q ++ + GTGLGL ++ V GK + ST KG Sbjct: 567 EDTGIGISEDKLANVFNAFSQADSTITRKYGGTGLGLTISSKYVAMMGGKLQVKSTVGKG 626 Query: 802 T 802 T Sbjct: 627 T 627 >gi|157374126|ref|YP_001472726.1| histidine kinase [Shewanella sediminis HAW-EB3] gi|157316500|gb|ABV35598.1| Histidine kinase [Shewanella sediminis HAW-EB3] Length = 938 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 78/255 (30%), Positives = 132/255 (51%), Gaps = 13/255 (5%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q + AK AE+ + KS+FL+ +SHE+RTP+ A+IG +++ + NP + Sbjct: 386 QRTQEFQQAKVRAERANQAKSEFLSMMSHELRTPMNAVIGSLDLLTLSK----QNPESMS 441 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 S ++ I+ND+LDI+KIESGKM L S+ E + + + A++KR+ Sbjct: 442 LIETATTSATNLIYILNDILDINKIESGKMQLEQRDFSITEVIDNVVQVFLPLAHKKRLN 501 Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPS----GGQIIISTTHTSNEEVILR 740 + IP++L D V+QI N+L NAI FT + G+I + T + + ++I + Sbjct: 502 LHIYEDPQIPKLLEGDAVKVRQILFNLLGNAIKFTHTVEGKPGEIRLITNISEHNDIIYK 561 Query: 741 VR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + D G+G+ +K PF Q S + GTGLGL ++ + G+ + S Sbjct: 562 ISFSIIDNGIGIDKETQKKLFTPFMQAQRSTTRKYGGTGLGLAISGNLTSMMGGEIKLNS 621 Query: 797 TPAKGTLIEIIFPLY 811 TP +G+ ++ P + Sbjct: 622 TPEQGSTFTVVLPFW 636 >gi|75909568|ref|YP_323864.1| periplasmic sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75703293|gb|ABA22969.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 575 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 82/268 (30%), Positives = 139/268 (51%), Gaps = 12/268 (4%) Query: 557 TMHDISEWKQEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +++ + E E+ K L AK++AE S KS FLA VSHE+RTPL A+IG S+++K+ Sbjct: 310 SLNRLIERVSERTKELEQAKELAEAASKAKSIFLANVSHELRTPLNAVIGLSQLLKDDAA 369 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + + I+ +G +L+++ND+LD+SKIE+GKM L+ E + ++ + V Sbjct: 370 DLSLSGEFTSDLETINSAGRHLLELINDILDLSKIEAGKMTLYPEIFDVVTLINNVVLTV 429 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + + ++ ++ + AD ++Q+ LN+LSNA FT +G I T E Sbjct: 430 KPTIEKNNNILEIYCDEHLGTMYADQTRMRQVLLNLLSNAAKFTTNGS--IKLTVRREKE 487 Query: 736 EVI---------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + + V DTG+GM+ + + +PF Q S + GTGLGL +++ Sbjct: 488 DFLAEMPFGAISFTVSDTGIGMSPSQQLQLFQPFTQGDTSTTKKYGGTGLGLAISRHFCQ 547 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 G+ + S P G+ + PL + S Sbjct: 548 MMGGEIIVKSQPGLGSTFTVYLPLQEQS 575 >gi|283786031|ref|YP_003365896.1| two-component system response regulator [Citrobacter rodentium ICC168] gi|282949485|emb|CBG89098.1| two-component system response regulator [Citrobacter rodentium ICC168] Length = 879 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 132/258 (51%), Gaps = 7/258 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 376 DVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 434 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E +S + Sbjct: 435 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITANYLPLV 491 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P + D ++Q+ N+LSNAI FT G I+ ++ + Sbjct: 492 VRKQLGLYCFIEPDVPVAMNGDPMRLQQVISNLLSNAIKFTDIG--CIVLHVQRDSDYLS 549 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 550 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 609 Query: 799 AKGTLIEIIFPLYDTSHP 816 G+ + PLY +P Sbjct: 610 GMGSQFTVRIPLYGAQYP 627 >gi|239907548|ref|YP_002954289.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797414|dbj|BAH76403.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 867 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 83/266 (31%), Positives = 134/266 (50%), Gaps = 9/266 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E + +L AK AE S KS+FLA +SHEIRTPL I+G ++++ Sbjct: 467 DLTELDVVRKELISAKDKAEASSMAKSEFLANMSHEIRTPLNGILGMLQLLETTTI---- 522 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + EY +S + +++D+LD+SKIES + + ++E V + Sbjct: 523 SDEQKEYLLGAIKSSKRLTRLLSDILDLSKIESKRTTIDQVEFDIEEVVRSVSEAFSISI 582 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNE 735 E + RT NNIP R++ D ++QI NI+ NAI FTP+G ++ + + HT+ Sbjct: 583 KENGLSFRTVLDNNIPRRLIGDETRMRQILFNIVGNAIKFTPTGKIEVELSLLSHHTNKS 642 Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V++ V DTG+G+ L+ ++PF Q+ S +G GLGL + + +V G I Sbjct: 643 CRVLVSVADTGIGIPADRLKDILEPFTQVDGSYIRSKQGAGLGLAIVRKLVALLGGNICI 702 Query: 795 FSTPAKGTLIEIIFPLYDTSHPHDCI 820 S GT ++F T+ I Sbjct: 703 DSELGAGTTFYVVFNFQCTTESFAAI 728 >gi|71909457|ref|YP_287044.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71849078|gb|AAZ48574.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 860 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 122/241 (50%), Gaps = 7/241 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ +L AK AE + KS FLA +SHEIRTP+ AI+GF+ +++ P+ Sbjct: 464 RERTAQLEGAKDAAELANRAKSAFLANMSHEIRTPMNAIVGFAHLLRRDGV----TPKQA 519 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + + I S +L I+ND+LDISKIESGK+ L +P + + V + L A K + Sbjct: 520 DRLDKIMGSAEHLLAIINDVLDISKIESGKLVLEAKPFRVVDVVERLVGLCAERAQSKGL 579 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---RV 741 RT P ++ D + Q LN + NAI FT +G + + + +L V Sbjct: 580 AFRTMVGALPPVLVGDCTRLSQALLNYVGNAIKFTEAGTITLRAEVLEEDAHSLLVRFEV 639 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +DTG+G+ L + +PF Q NS + GTGLGL + + + G+ + S G Sbjct: 640 QDTGIGIAGDVLSRLFRPFEQADNSTTRKYGGTGLGLAITLRLAELMGGQAGVDSEAGVG 699 Query: 802 T 802 + Sbjct: 700 S 700 >gi|326563325|gb|EGE13592.1| two-component system sensor histidine kinase [Moraxella catarrhalis 46P47B1] Length = 988 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 87/263 (33%), Positives = 133/263 (50%), Gaps = 24/263 (9%) Query: 557 TMHDIS----EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 T HD+ E + + + +A+ A S KS FLA +SHE+RTPL +I GF ++ Sbjct: 289 TEHDLQQAFDEMEMQNISIRNARDAAISTSQAKSAFLANISHELRTPLNSIDGFINLLA- 347 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 R G L + + Y I +S +L +VND+LD SKIE+GK+ L L +AV + + Sbjct: 348 -RKGELTGEQNL-YVQTIKKSSAHLLALVNDVLDFSKIEAGKLILDSHDFDLYDAVYDVV 405 Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 ++ A EKR+ + F +++P RI+ D VKQI N++ NAI FT G ++ + Sbjct: 406 DMLSPAALEKRLRLAVLFYDDVPTRIIGDSLRVKQILTNLVGNAIKFTDMGSVVVRVSLA 465 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD----- 786 + + V DTG G++ + E+ + FGQ S R GTGLGL ++K + Sbjct: 466 EKTGYLCIEVEDTGKGISESDKEQLFQSFGQGDLSVTRRYGGTGLGLVISKQLTQLMGGS 525 Query: 787 -----------ANMGKFYIFSTP 798 AN G + F P Sbjct: 526 IGFIDNRSENIANAGATFWFEMP 548 >gi|145300355|ref|YP_001143196.1| hybrid sensory histidine kinase BarA [Aeromonas salmonicida subsp. salmonicida A449] gi|142853127|gb|ABO91448.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 903 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 79/239 (33%), Positives = 129/239 (53%), Gaps = 9/239 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ Q P +Y Sbjct: 276 ELDMAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFT----RQLLKTALTPSQTDYMQT 331 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S +L I+ND+LD SK+E+GK+ L P SL + ++E + L+ A++K++ + Sbjct: 332 IEKSARNLLGIINDILDFSKLEAGKLQLEHIPFSLRDTLNETMHLLGPSAHDKQLELSLQ 391 Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI---LRVRDT 744 +P L D ++Q+ N+ NAI FT G + I T SN + + +RDT Sbjct: 392 VDAEVPDYLTGDPMRLQQVLTNLAGNAIKFTERGNVDVHIEQTGGSNGNKVRLNVLIRDT 451 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 G+G++ + + + F Q +S R GTGLGL + + +V G+ S KG++ Sbjct: 452 GIGISEEQQRQLFQAFNQADSSISRRYGGTGLGLVITQKLVQQMGGQIRFESELGKGSI 510 >gi|34498055|ref|NP_902270.1| two-component sensor/regulator [Chromobacterium violaceum ATCC 12472] gi|34103910|gb|AAQ60270.1| probable two-component sensor/regulator [Chromobacterium violaceum ATCC 12472] Length = 924 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 130/246 (52%), Gaps = 11/246 (4%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L A+KIAE S KS+ +A +SHEIRTPL ++G +++ L I+ A Sbjct: 381 QELDEARKIAELMSRRKSEHIASISHEIRTPLNGVVGALSLLQRSTL-TLQQRELIDTAR 439 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + S + +L I+NDLLD S IE+G++ L +E VS+ + + + + + L A EK + +R Sbjct: 440 F---STDYLLIIINDLLDFSHIEAGQLELSYESVSVLQVLDQVMLTIHLRAQEKDLALRV 496 Query: 689 SFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 + +P +A D V+QI +N+L NA+ FT SG I + + + + DTG G Sbjct: 497 LVTDEVPAEMAMDRMRVQQILINLLGNAVKFTESGH--ISVLVARKGDMLAISIEDTGPG 554 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + +PF Q+ + G GLGL +A + + G+ + S KG+ ++ Sbjct: 555 IAEDKQLDIFRPFVQV----HMHNGGNGLGLTIASRLSNLMGGEILLQSELGKGSCFTLM 610 Query: 808 FPLYDT 813 PL D+ Sbjct: 611 LPLSDS 616 >gi|303247196|ref|ZP_07333470.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302491355|gb|EFL51243.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 930 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 82/251 (32%), Positives = 128/251 (50%), Gaps = 11/251 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + + L A+K AE S KS FLA +SHEIRTPL+ IIG +++ +Q P Sbjct: 419 RARERDLERARKQAEAASRAKSGFLANMSHEIRTPLSGIIGLTQMTLSQ----TPRPEVR 474 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD--EAVSEAISLVQLYANEK 682 E+ I S +L IVND+LD SKIE+GKM F PV D E + + + +K Sbjct: 475 EHLELILDSSRSLLAIVNDILDFSKIEAGKM--EFSPVDFDLREILDRTMKPFHFSSRQK 532 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR- 740 + + A +P IL D + Q+ N++ NA+ FT G + + +++ Sbjct: 533 GLRLSLRIAQELPDILHGDPDRIMQVVRNLVGNALKFTDKGEVAVEFRLLRPGDPMLVEC 592 Query: 741 -VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 VRDTG+G+ L + + F Q+ +S+ R GTGLGL +++ +V+ G + S P Sbjct: 593 SVRDTGIGIPEERLPELFQVFSQLESSRTKRYGGTGLGLAISRRLVEMMGGTIGVRSRPG 652 Query: 800 KGTLIEIIFPL 810 +G++ L Sbjct: 653 QGSVFSFTVSL 663 >gi|189423187|ref|YP_001950364.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419446|gb|ACD93844.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 774 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 134/255 (52%), Gaps = 8/255 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI + Q + + A+ AE + KS FLA +SHEIRTPL I+G +++++ R G Sbjct: 375 DIGQLVQAQEEARQARLAAEAANRAKSAFLANMSHEIRTPLNGIVGTAQLLEFTRL--TG 432 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + +Y I S + +L ++ND+LD+SKIE+GK+ L L ++ I ++ A Sbjct: 433 EQK--DYLADIKSSSSTLLSLLNDVLDLSKIEAGKITLESLDFRLRASIDGVIKSLKSLA 490 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV 737 K + I +++P L D KQI LN+L NA+ FT +GG + + N+++ Sbjct: 491 QSKGLQIELQIPDSVPDCLKGDQTRFKQILLNLLGNAVKFTETGGITVSVRLKEQHNDQL 550 Query: 738 ILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +L V+DTG+G++ LE +PF Q S + GTGLGL + K +V G+ + Sbjct: 551 LLEIDVKDTGIGISPQMLEMIFEPFTQAETSLTKKYGGTGLGLAICKRLVTMMGGQLWAE 610 Query: 796 STPAKGTLIEIIFPL 810 S G+ + P Sbjct: 611 SVAGGGSTFHLAAPF 625 >gi|331000363|ref|ZP_08324044.1| response regulator receiver domain protein [Parasutterella excrementihominis YIT 11859] gi|329572159|gb|EGG53824.1| response regulator receiver domain protein [Parasutterella excrementihominis YIT 11859] Length = 894 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 85/262 (32%), Positives = 135/262 (51%), Gaps = 12/262 (4%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +++ D +E + L+ A A+ S KSDFL+ +SHEIRTP+ AIIG + + Sbjct: 351 VSLFDETEQIAYQKNLADALTTAKNASQAKSDFLSHMSHEIRTPMNAIIGMTTI----AL 406 Query: 616 GPLGNPRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 +G+ + +E + +L ++ND+LD+SKIES K+ L +E L E V +L Sbjct: 407 SRIGDKQKVEDCLKKTLLASRHLLGLINDILDMSKIESNKLALSYENFDLQETVHCIYNL 466 Query: 675 VQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQII--ISTT 730 ++ A EK + N+I + ++ D V Q+ +N+++NA+ FTP GG++ +S Sbjct: 467 IEPQAKEKGVSFEI-ITNDIRQECLVGDPLRVNQVFINVIANAVKFTPRGGKVTMRLSEK 525 Query: 731 HTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 HTS E + LR + D G+GM L + PF Q GTGLGL + +V+ Sbjct: 526 HTSPEHIHLRCVISDNGIGMKKEFLSRVFLPFEQETAEIAQHFGGTGLGLAITHNLVNLM 585 Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810 G + S KG+ I P Sbjct: 586 GGSIDVQSEEGKGSTFTIDLPF 607 >gi|295688630|ref|YP_003592323.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] gi|295430533|gb|ADG09705.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] Length = 614 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 90/275 (32%), Positives = 144/275 (52%), Gaps = 8/275 (2%) Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 S +T DI+E K+ + ++ A ++AE S+ KSDFLA ++HE+RTPLTAIIGF+EV+ Sbjct: 209 SGILLVTSRDITERKRLELDIAKALELAEAASAAKSDFLANMTHELRTPLTAIIGFAEVL 268 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + R G L + + +D S N +L +VND+LD S++E+ + L P S Sbjct: 269 R--RSGRLDETAARQAGHILDAS-NTLLSVVNDVLDFSRLEAAGLELDPAPFDPAAMASS 325 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 +LV+ A K + + A I + D + Q+ LN LSNA+ FT G + + Sbjct: 326 CATLVEERAGAKGLAVVVETAEAIAPMNLDGSRLSQVLLNFLSNAVKFTARGAITVRLSQ 385 Query: 731 HTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 ++ +LR V DTG+G+ E F Q + R GTGLGL +++ +++ Sbjct: 386 VVEGDQAVLRGEVIDTGIGIAPENREAIFDRFSQADAAVSRRFGGTGLGLAISRRIIEHM 445 Query: 789 MGKFYIFSTPAKGT--LIEIIFPLYDT-SHPHDCI 820 G+ + S +G+ E+ P+ D S P D + Sbjct: 446 GGRIGVDSVEGEGSTFWFEVRGPVADAPSAPTDIV 480 >gi|270307587|ref|YP_003329645.1| sensor kinase, two-component system, OmpR family [Dehalococcoides sp. VS] gi|270153479|gb|ACZ61317.1| sensor kinase, two-component system, OmpR family [Dehalococcoides sp. VS] Length = 581 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 97/363 (26%), Positives = 176/363 (48%), Gaps = 37/363 (10%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT-VFLEQNTPSVMNH 511 +L ++L+ DGI +++REG+I N A ++F E ++ F + SV H Sbjct: 250 RLSAVLQRMGDGIFLLDREGVISLLNPASERIFKLEAEGVIGHSFVEAIRDHEIHSVFEH 309 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 + +Q + + L + + L II L S Y + + D+SE + +L Sbjct: 310 ARS-----SGKQEMGFVELAAGRR----FLGIIATPLVSQSGYLVLVQDLSELR----RL 356 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 ++ DF+A +SHE+RTP++++ +E ++ G +P A +ID Sbjct: 357 EKVRR----------DFVANISHELRTPISSLKLLTETLQE---GAASDPAV--AAGFID 401 Query: 632 RSGNLVLD----IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + +L +D +V +L D+S IESG+ L +P + A+ A ++ A I + Sbjct: 402 KI-HLEVDKLAQLVTELSDLSAIESGQAVLRLQPGDISTAIKLAAERLRPQAERAGISLG 460 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 +P++ D V+Q+ +N++ NAI FTP GG+I I T + +++ V D+G+G Sbjct: 461 VELPETLPQVKLDENRVEQVLVNLVHNAIKFTPKGGRIKIG-ARTQGQTLVVYVSDSGIG 519 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +L + + F ++ ++ GTGLGL ++K +V A+ G + S KG Sbjct: 520 IPEEDLTRVFERFYKVDKARS--SGGTGLGLAISKHIVQAHGGTIWAESVYGKGATFSFS 577 Query: 808 FPL 810 PL Sbjct: 578 LPL 580 >gi|110805009|ref|YP_688528.1| sensor protein torS [Shigella flexneri 5 str. 8401] gi|110614557|gb|ABF03224.1| sensor protein torS [Shigella flexneri 5 str. 8401] Length = 816 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 84/244 (34%), Positives = 131/244 (53%), Gaps = 19/244 (7%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 EK S KS FLA +SHEIRTPL I+G ++++ + P N + + D SG +L Sbjct: 350 EKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLQAITD-SGESLL 405 Query: 639 DIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 I+ND+LD S IE+G N+ FEP L E+ + L+ + I + T+ A++ Sbjct: 406 TILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLATAIADD 462 Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 +P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G G+ + Sbjct: 463 VPSALMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRTDGEQWLVEVEDSGCGIDPAK 520 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + PL Sbjct: 521 LAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRV 576 Query: 813 TSHP 816 + P Sbjct: 577 ATAP 580 >gi|331646251|ref|ZP_08347354.1| TMAO reductase sytem sensor TorS [Escherichia coli M605] gi|331045003|gb|EGI17130.1| TMAO reductase sytem sensor TorS [Escherichia coli M605] Length = 910 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 132/250 (52%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 432 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 487 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 488 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 544 Query: 688 TSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T A+++P +L D R ++Q+ N+LSNA+ FT G II + E+ ++ V D+G Sbjct: 545 TEIADDVPTVLMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRIDGEQWLVEVEDSGC 602 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 603 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 658 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 659 RVPLRIATAP 668 >gi|228910412|ref|ZP_04074227.1| hypothetical protein bthur0013_45590 [Bacillus thuringiensis IBL 200] gi|228849178|gb|EEM94017.1| hypothetical protein bthur0013_45590 [Bacillus thuringiensis IBL 200] Length = 558 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 101/376 (26%), Positives = 182/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ +L++ Sbjct: 211 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEE--------YLDRLYYE 262 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 +H TEI+ L +E+I + K K + L + I++ F Sbjct: 263 SFHH--TEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 315 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 316 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 359 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + + + Sbjct: 360 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHM 418 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+GG + + Sbjct: 419 VLDNKAGEKEISLQVNVLKR-ASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDK 477 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 478 YNAYI-KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTIT 536 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 537 VDSEVGEGTTFTVVLP 552 >gi|228954857|ref|ZP_04116877.1| hypothetical protein bthur0006_42240 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229072090|ref|ZP_04205299.1| hypothetical protein bcere0025_42560 [Bacillus cereus F65185] gi|229081840|ref|ZP_04214332.1| hypothetical protein bcere0023_44680 [Bacillus cereus Rock4-2] gi|229112053|ref|ZP_04241596.1| hypothetical protein bcere0018_42960 [Bacillus cereus Rock1-15] gi|229129872|ref|ZP_04258838.1| hypothetical protein bcere0015_43120 [Bacillus cereus BDRD-Cer4] gi|228653563|gb|EEL09435.1| hypothetical protein bcere0015_43120 [Bacillus cereus BDRD-Cer4] gi|228671376|gb|EEL26677.1| hypothetical protein bcere0018_42960 [Bacillus cereus Rock1-15] gi|228701428|gb|EEL53922.1| hypothetical protein bcere0023_44680 [Bacillus cereus Rock4-2] gi|228711024|gb|EEL62990.1| hypothetical protein bcere0025_42560 [Bacillus cereus F65185] gi|228804846|gb|EEM51445.1| hypothetical protein bthur0006_42240 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 558 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 101/376 (26%), Positives = 182/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ +L++ Sbjct: 211 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEE--------YLDRLYYE 262 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 +H TEI+ L +E+I + K K + L + I++ F Sbjct: 263 SFHH--TEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 315 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 316 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 359 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + + + Sbjct: 360 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHM 418 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+GG + + Sbjct: 419 VLDNKAGEKEISLQVNVLKR-ASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDK 477 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 478 YNAYI-KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTIT 536 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 537 VDSEVGEGTTFTVVLP 552 >gi|154252300|ref|YP_001413124.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154156250|gb|ABS63467.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 946 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 84/242 (34%), Positives = 124/242 (51%), Gaps = 18/242 (7%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E + K +L AK AE + KSDFLA +SHEIRTP+ ++G +E++ N Sbjct: 253 IAELEATKQELIAAKDQAEAGNRAKSDFLANMSHEIRTPMNGVLGMTELLLTTAL----N 308 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 ++A + SG +L IVND+LD+SK+E+G++ L L V AISL+ A Sbjct: 309 AEQRKFAETVRESGEALLTIVNDILDVSKLEAGRLELDHIDFDLVNTVESAISLMAARAA 368 Query: 681 EKRILIRTSF---ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII------ISTTH 731 EK+I + A I R D ++Q+ LN++ NAI FT GG + + Sbjct: 369 EKQIDLGAYIEPAARGIYR--GDPARLRQVLLNLIGNAIKFTEKGGVAVRVSVYRVEDPQ 426 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV---DAN 788 T + V DTG+G+ + + F Q +S R GTGLGL + K +V D N Sbjct: 427 TKASHLRFEVHDTGIGIPEDVCGRLFQKFSQADSSVTRRYGGTGLGLAICKQIVELMDGN 486 Query: 789 MG 790 +G Sbjct: 487 IG 488 >gi|113477259|ref|YP_723320.1| histidine kinase [Trichodesmium erythraeum IMS101] gi|110168307|gb|ABG52847.1| histidine kinase [Trichodesmium erythraeum IMS101] Length = 1121 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 124/231 (53%), Gaps = 15/231 (6%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +FLA +SHE++TPLTA++G S ++K+Q G L N R YA I +SG ++ ++ND+ Sbjct: 369 KDEFLACISHELKTPLTAVLGLSSLLKDQTLGAL-NKRQTHYATLIHQSGRHLMAVINDI 427 Query: 645 LDISKIESGKMNLHFEPVSL----DEAVSEAISLVQ---------LYANEKRILIRTSFA 691 LD++++E+G+M L EPV + D A EA+ L ++++ R Sbjct: 428 LDLTRMETGQMELIPEPVEIRKVCDRAFQEALQLQHKRPQGQSSAIFSDSIRAKYTLEIE 487 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 ++ I+AD ++Q+ +N+LSNA+ FTP G++ + + + V D G+G+ Sbjct: 488 KDLDIIIADELRLRQMLVNLLSNALKFTPIDGKMGLKVARWE-KWITFTVWDFGIGIPAN 546 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + + F Q+ N EGTGLGL L + + + G S KG+ Sbjct: 547 KQHLIFQKFQQLENPLIREFEGTGLGLVLTQRLARLHGGDVTFISQEGKGS 597 >gi|254417391|ref|ZP_05031133.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196175826|gb|EDX70848.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 684 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 80/253 (31%), Positives = 135/253 (53%), Gaps = 25/253 (9%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHEIRTPL A+IG + +++N + + + I +SG +L +ND+ Sbjct: 158 KSEFLATMSHEIRTPLNAVIGLTGILENTKL----DAHQQDLVETIRQSGETLLITINDV 213 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRS 703 LD +KIESGK+ L F+P +L + + A+ L A +K + + +P L D+ Sbjct: 214 LDFAKIESGKLELEFKPFNLRDCLETAVDLFAPKAVQKGLELTYFIDPEVPSTLVGDVTR 273 Query: 704 VKQIALNILSNAIHFTPSGGQIIIS--------TTHTSNEE--------VILRVRDTGVG 747 ++QI +N+LSNAI FT G++ +S T T N++ ++ V+DTG+G Sbjct: 274 LRQILINLLSNAIKFT-DVGEVSVSVKVEHCYVTNSTQNQDSHTSPTVCILFSVKDTGIG 332 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + + F Q+ +S + GTGLGL ++K + + G+ ++ ST +G+ Sbjct: 333 IPKDRFNRLFQRFSQLDSSTTRQYGGTGLGLIISKQLSEMMGGEIWVDSTLGEGSTFSFC 392 Query: 808 FPL---YDTSHPH 817 L D S P+ Sbjct: 393 VVLSVDQDASEPN 405 >gi|46484678|gb|AAS98248.1| sensor protein [Listonella anguillarum] Length = 848 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 81/264 (30%), Positives = 137/264 (51%), Gaps = 13/264 (4%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ + + A++ AE+ + +++FLA++SHE+RTPL I+G S+++K + + Sbjct: 455 QDITTIAEAAKQSRLARQEAEESARIRAEFLAKMSHELRTPLNGILGVSQLLKRE----I 510 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + +E N + SG +L ++ND+LD SKIE G+ + L E +S S+ + Sbjct: 511 SDHEQLEQVNVLCSSGEHLLAVLNDILDFSKIEQGQFRIQESDFKLVEVISAVESIYRPL 570 Query: 679 ANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 EK I S +NIP I +D + QI N+L+NA FT G I I +N Sbjct: 571 CAEKEI--EFSLKSNIPPDMMIHSDQVRLNQILFNLLNNATKFTHHG-LISIEFQQKNNH 627 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++ + + DTG+G+ +L +PF Q+ ++ G+GLGL + K++++ G + Sbjct: 628 QLFISISDTGIGIREQDLALIFEPFTQVESNTTREYGGSGLGLAIVKSLIEMLGGAVNVK 687 Query: 796 STPAKGTLIEIIFPLYDTSHPHDC 819 S GT + PL S DC Sbjct: 688 SQFGVGTTFSVELPLVVVS---DC 708 >gi|186682032|ref|YP_001865228.1| integral membrane sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186464484|gb|ACC80285.1| integral membrane sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 629 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 145/252 (57%), Gaps = 13/252 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I E K+ + +L A+++A+ S KS+FLA +SHE+RTPL I+G+++++ QR L Sbjct: 139 EIVERKRIEKELRQAEEVAQNSSQAKSEFLANMSHELRTPLNGILGYTQIL--QRTESL- 195 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + + + I + G+ +L ++ND+LD+SKIE+ K+ L+ L + + ++ A Sbjct: 196 SEKGRKGLSVIYQCGSHLLTLINDVLDLSKIEARKLELYPVDFYLPAFIDSVTEICRIRA 255 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHT- 732 +K I N+P I D + ++Q+ +N+LSNA+ FT G Q+I ++ Sbjct: 256 EQKVIAFNIEIDPNLPTGIHGDEKRLRQVLINLLSNAMKFTHQGSVTFKTQVINQESNAN 315 Query: 733 --SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 +N ++ V DTG G+T + EK +PF Q+ SQ+ + EGTGLGL +++ +V G Sbjct: 316 GKTNYKIRFEVVDTGTGITPEQAEKIFQPFEQV-GSQKRQSEGTGLGLAISQKIVLLMGG 374 Query: 791 KFYIFSTPAKGT 802 + + S KG+ Sbjct: 375 QIKVQSEFGKGS 386 >gi|332308096|ref|YP_004435947.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175425|gb|AEE24679.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 781 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 107/376 (28%), Positives = 172/376 (45%), Gaps = 31/376 (8%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVM--N 510 L SI++A+ D I N EG NR ++ G E I P V+ E+ V + Sbjct: 160 LRSIIDASPDLIYYRNEEGQFAGCNRLAEQMTGRTEAELIGLTPHEVWEEELASQVAASD 219 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM------HDISEW 564 H E+L D+ T E + +R K+PF + + DI+E Sbjct: 220 H---EVLENDVSITEEVWLRFADGRRGYFEMR----KVPFYDKDNKRLGLLAFGRDITER 272 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 KQ +N I K S K+ F+A +SHE+RTPL I+G S ++++ + + Sbjct: 273 KQAEN-------IVAKASKDKTKFIATISHELRTPLNGIVGLSRMLRDTKL----DKEQF 321 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + + I SG + +I ND++DI ++ K+ L + VS+ + E S+++L A +K + Sbjct: 322 AWVSTIYASGITLGNIFNDIIDIDRMGRDKLELSLKTVSIKDFTEELSSIIKLLAADKGL 381 Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILR 740 T +P + D ++QI N+L NA+ FT G + HT+ + V Sbjct: 382 AFDTDIKEPLPDFVEVDGTRLRQILWNLLFNAVKFTQKGKVSLSVEAHTAGDGISHVKFC 441 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTGVG+ EL+K + Q+ + GTG+GL + + MV G + S K Sbjct: 442 VGDTGVGIPQTELDKIFAMYYQVNLPEHQSATGTGIGLAICQQMVSLMNGDIKVSSEIGK 501 Query: 801 GTLIEIIFPLYDTSHP 816 GT + PL + P Sbjct: 502 GTCFTVELPLPISKRP 517 >gi|301057596|ref|ZP_07198676.1| PAS domain S-box protein [delta proteobacterium NaphS2] gi|300448320|gb|EFK12005.1| PAS domain S-box protein [delta proteobacterium NaphS2] Length = 1052 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 87/265 (32%), Positives = 144/265 (54%), Gaps = 16/265 (6%) Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 K P +S S T+ DI+E K+ + A+ AE+ ++ KS+FLA +SHEIRTP+ A+IG Sbjct: 470 KGRPLTS--SGTVMDITERKETERLQQEARDRAERANAAKSEFLANMSHEIRTPMNAVIG 527 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 F++++ + + ++YA I +SG ++ ++ND+LD SKIE+G +L FE + D Sbjct: 528 FTDLLLDSGLDDI----QMDYAKTIKQSGEGLISLINDILDFSKIEAG--DLDFEEIDFD 581 Query: 666 EAV--SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG 722 + + +++ EK I I + +P I D V+Q+ N+++NA FT + Sbjct: 582 PELLAYDICDMIRPRIGEKPIEILCHIGDTVPDHIKGDPTRVRQVLTNLMANAPKFTEA- 640 Query: 723 GQIIISTTHTSNEEVILR----VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 G+I +S +E ++ VRDTG+G+ +LE PF Q S + GTGLGL Sbjct: 641 GEIELSLDVEEEDEGRVKLHASVRDTGIGIAGNKLELIFDPFQQADGSTTRKYGGTGLGL 700 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTL 803 + K + G + S KG++ Sbjct: 701 SICKQISRLMGGDVWAESDEGKGSI 725 >gi|294777755|ref|ZP_06743202.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] gi|294448399|gb|EFG16952.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] Length = 1444 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 123/236 (52%), Gaps = 6/236 (2%) Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIG-FSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 I +K S K F +SHE+RTPLT I G E+ + ++ G ++Y + ++++ Sbjct: 909 IEQKLSELKIKFFTNISHELRTPLTLIQGPIQELREKEKLSQKG----MQYVDLMEKNTK 964 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L +VN +LD KI++GKM LH +L+E V ++ A E + A Sbjct: 965 QMLQLVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDI 1024 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELE 754 + AD V + NI+SNA FTP+GG I ++ + ++ +RV D+GVG+ +L Sbjct: 1025 MVWADKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDDDRHCYVRVEDSGVGIPQSKLS 1084 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + F Q N++ +GTG+GL L+K ++ + G+ Y S KG + I L Sbjct: 1085 EIFERFSQADNARGAYYQGTGIGLALSKEIISLHHGEIYAESPEGKGAVFTIELQL 1140 >gi|291534447|emb|CBL07559.1| EDD domain protein, DegV family [Roseburia intestinalis M50/1] Length = 891 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 88/292 (30%), Positives = 157/292 (53%), Gaps = 16/292 (5%) Query: 526 EKITLGSTKEEKLLSLRIIIKKLP--FSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKES 582 E+IT + E ++ + II+ + F +C + +SE+++++N+ A+ +A + Sbjct: 148 ERITY--MESESVVYVDIIVSAVITIFMTCAFMFIQITLSEYQRKENEKQQAELVAAMNT 205 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 +S FLA +SHEIRTP+ IIG +E+ ++ + + IE AN I + ++L ++ Sbjct: 206 --QSRFLANMSHEIRTPINTIIGLNEMTLREENL----SDDIIENANNIQSASKMLLSLI 259 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700 ND+LD+SKIE+GKM + E SE ++ + A+EK + + + +P +L D Sbjct: 260 NDILDLSKIEAGKMEVVPARYETGELFSEIVNTTWIRAHEKNLEFCVNVSEKLPSMLYGD 319 Query: 701 LRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAM 757 +KQ+ NILSNAI +T G + + + T +E++L+ V DTG+G+ +++ Sbjct: 320 EMRIKQVLTNILSNAIKYTQKGSVTLFVESEQTGADEILLKMAVIDTGMGIRQDDMKYLF 379 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F ++ EGTGLGL + +V+ G+ + S KG+ I P Sbjct: 380 DSFKRVNEGSTKGIEGTGLGLSICSQLVNLMGGQITVDSIYQKGSTFTITIP 431 >gi|224371381|ref|YP_002605545.1| sensory box histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] gi|223694098|gb|ACN17381.1| sensory box histidine kinase/response regulator [Desulfobacterium autotrophicum HRM2] Length = 967 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 79/240 (32%), Positives = 127/240 (52%), Gaps = 16/240 (6%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK+ AE+ S KS FLA +SHEIRTP+ ++G +E++ ++ I Sbjct: 291 LEKAKETAEEASRAKSQFLANMSHEIRTPMNGVLGMAELLMETDL----TEEQRRFSKTI 346 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG+ +L I+ND+LD SKIE+GK+ L +L + + + ++ A+ K++ Sbjct: 347 QSSGSSLLAIINDILDFSKIEAGKLELETINFNLQILIDDVMQMLASRAHAKQL----EL 402 Query: 691 ANNIP-----RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILRV--R 742 A IP + D +Q+ N++ NAI FT G ++ ++TT + V L V R Sbjct: 403 AVLIPPETCIFLRGDPTRFRQVLTNLVGNAIKFTKQGEVVVQVATTVSDQNRVKLHVLIR 462 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G++ +L++ PF Q S + GTGLGL ++K +V G + S P KG+ Sbjct: 463 DTGIGISQQDLQRLFSPFSQADGSTTRKYGGTGLGLAISKEIVALMGGDLHCESEPGKGS 522 >gi|167614786|ref|ZP_02383421.1| two-component system sensor protein [Burkholderia thailandensis Bt4] gi|257141372|ref|ZP_05589634.1| two-component system sensor protein [Burkholderia thailandensis E264] Length = 987 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 132/263 (50%), Gaps = 8/263 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DIS K+ + KL A+ +++ + KS FLA +SHEIRTPL AIIG E+++ + Sbjct: 479 TLLDISMRKESELKLKEARIASDQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSQL- 537 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + E ++ N +L I+ND+LD+SK+ESG+M L P + + E + Sbjct: 538 ---SNQQSERLQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIQALLQEIVDAYA 594 Query: 677 LYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGG---QIIISTTHT 732 A K + + ++ + R + D ++QI N++ NAI FT G + + Sbjct: 595 PLAESKGLQLLSNLGEGVARYYSGDPARIRQILSNLIGNAIKFTERGHISVDVHQAKAAQ 654 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + + + V DTG+G+ + + Q S R G+GLGLPL K + G Sbjct: 655 GDSAIEIWVNDTGIGIRPDRIATLFDVYTQADTSIHRRFGGSGLGLPLCKRLATIMGGSI 714 Query: 793 YIFSTPAKGTLIEIIFPLYDTSH 815 + S P GT + ++ PL + H Sbjct: 715 EVDSLPDFGTTVTVVLPLREARH 737 >gi|94499610|ref|ZP_01306147.1| multi-sensor hybrid histidine kinase [Oceanobacter sp. RED65] gi|94428364|gb|EAT13337.1| multi-sensor hybrid histidine kinase [Oceanobacter sp. RED65] Length = 1120 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 134/256 (52%), Gaps = 15/256 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 HDI + + L AK AE+ + KS FLA +SHEIRTPL A++G S ++ + Sbjct: 734 HDIKDMYAREESLRQAKADAEELADQKSMFLANMSHEIRTPLNALVGLSNLL-------V 786 Query: 619 GNPRYIEYANY---IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 N +++ +Y I+++ + IV+D+LD SKI++ +++L V+ DE + E SL Sbjct: 787 ANETHVKAQDYMRSINKASIHLKSIVDDILDFSKIDADRIDLDEIAVNFDEFLCEIKSLH 846 Query: 676 QLYANEKRI--LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + A EK + + N+I ++ +R +QI N++SNAI FT G I++ T Sbjct: 847 EQSAREKGLHFEVDNRLDNDIAIVIDPVR-YRQIINNLVSNAIKFTEKGEVIVV--TKKQ 903 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E ++L V DTG G+ +L PF Q + + GTGLGL + K + + G Sbjct: 904 QESLLLSVCDTGCGLDENQLSNLFDPFSQADITTTRKYGGTGLGLSICKGLAERMSGSIS 963 Query: 794 IFSTPAKGTLIEIIFP 809 + S KG+ + P Sbjct: 964 VSSELGKGSCFYVSIP 979 >gi|1679757|gb|AAB19216.1| two-component histidine kinase CHK-1 [Glomerella cingulata] gi|1679760|gb|AAB19217.1| two-component histidine kinase CHK-1 [Colletotrichum gloeosporioides] Length = 745 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 86/261 (32%), Positives = 135/261 (51%), Gaps = 20/261 (7%) Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 +S Y + DI++ K + KL A + KS FL+ +SHEIRTPL I G + Sbjct: 84 ASSYFGSATDINDHKLLEAKLKEAME-------SKSRFLSNMSHEIRTPLIGISGMVSFL 136 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 ++ N +Y N I S N +L I+ND+LD+SK+++G M L +E + + Sbjct: 137 QDTTL----NEEQRDYTNTIQTSANSLLMIINDILDLSKVDAGMMKLKYEWFHTRSLIED 192 Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-----GQ 724 LV A KR+ + ++P + D ++Q+ LN++ NAI FT G + Sbjct: 193 VNELVSTMAIAKRLELNYIVEEDVPAWVKGDKVRIRQVLLNVIGNAIKFTAEGEVFSRCR 252 Query: 725 IIIST-THTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 I +T + SN+E++L V DTG G T E + KPF QI S + G+GLGL ++ Sbjct: 253 IFTNTKSALSNDEIMLEFAVIDTGRGFTKEEADLIFKPFSQIDGSSTRQHGGSGLGLVIS 312 Query: 782 KAMVDANMGKFYIFSTPAKGT 802 + +V+ + GK + P KG+ Sbjct: 313 RQLVELHGGKMEGTAVPGKGS 333 >gi|150015596|ref|YP_001307850.1| histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149902061|gb|ABR32894.1| histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 781 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 140/249 (56%), Gaps = 10/249 (4%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +I E K + KL AK+ AE+ +S KS FLA +SHEIRTP+ I+G + +++ F L Sbjct: 382 EEIEEHKLTETKLKAAKEEAERANSAKSQFLANMSHEIRTPMNGIMGMTSLLE---FSKL 438 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + I+ I+ S +L I+ND+LD+S ++ GK+ L E +++ ++E+ +L Sbjct: 439 TDEQ-IDIVKMIETSSKHLLQIINDILDLSVMDVGKIELKPERINIFNLMNESRNLFTYL 497 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736 A K + + NN+P I+ D + Q+ N++ NAI FT G+I +S ++E Sbjct: 498 AENKGLKLEIIVDNNLPNEIILDKGRLMQVLSNLIGNAIKFTEK-GKIQVSVDKVEDKEN 556 Query: 737 ---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ V+DTG+G+ ++ + F Q+ S + +GTGLGL ++K +V+ G+ Sbjct: 557 KVKLMFSVKDTGIGIKEEDIPRLFNYFTQLDISASKKFQGTGLGLAISKNIVELMGGEIS 616 Query: 794 IFSTPAKGT 802 + S KG+ Sbjct: 617 VESQYGKGS 625 >gi|255007853|ref|ZP_05279979.1| putative two-component sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313145560|ref|ZP_07807753.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313134327|gb|EFR51687.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 631 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 81/252 (32%), Positives = 136/252 (53%), Gaps = 14/252 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ +L A+ AE+ + KS FLA +SHEIRTPL AI+GFS ++ Sbjct: 391 KKTHQRLEEARLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLSQVE----DKEEMK 446 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EYA+ I+ + +L+L +++D+LD+SKIESG + H +++ +SE + +L + + Sbjct: 447 EYADIIETNTDLLLQLISDILDMSKIESGMYDFHITRADVNQMMSEIEQVGKLRIKSEEL 506 Query: 685 LIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 ++ +F +P+ + D + Q+ +N+L+NAI FT SGG+I + + V Sbjct: 507 VL--TFDEQLPQCILYTDKNRLTQVIINLLTNAIKFT-SGGEIRMGYRLKDAATLYFYVS 563 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG GM+ + E + F + Q GTGLGL +++ +++ G+ + S KG+ Sbjct: 564 DTGCGMSTEQCEHVFERFVKYNPFIQ----GTGLGLSISRMIIEKLGGEIGVTSEVGKGS 619 Query: 803 LIEIIFPLYDTS 814 L P Y TS Sbjct: 620 LFWFTLP-YRTS 630 >gi|229180907|ref|ZP_04308242.1| hypothetical protein bcere0005_42510 [Bacillus cereus 172560W] gi|229192789|ref|ZP_04319747.1| hypothetical protein bcere0002_44400 [Bacillus cereus ATCC 10876] gi|228590628|gb|EEK48489.1| hypothetical protein bcere0002_44400 [Bacillus cereus ATCC 10876] gi|228602464|gb|EEK59950.1| hypothetical protein bcere0005_42510 [Bacillus cereus 172560W] Length = 558 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 101/376 (26%), Positives = 182/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ +L++ Sbjct: 211 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEE--------YLDRLYYE 262 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 +H TEI+ L +E+I + K K + L + I++ F Sbjct: 263 SFHH--TEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 315 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 316 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 359 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + + + Sbjct: 360 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHM 418 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+GG + + Sbjct: 419 VLDNKAGEKEISLQVNVLKR-ASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDK 477 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 478 YNAYI-KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTIT 536 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 537 VDSEVGEGTTFTVVLP 552 >gi|150005428|ref|YP_001300172.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149933852|gb|ABR40550.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1467 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 123/236 (52%), Gaps = 6/236 (2%) Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIG-FSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 I +K S K F +SHE+RTPLT I G E+ + ++ G ++Y + ++++ Sbjct: 932 IEQKLSELKIKFFTNISHELRTPLTLIQGPIQELREKEKLSQKG----MQYVDLMEKNTK 987 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L +VN +LD KI++GKM LH +L+E V ++ A E + A Sbjct: 988 QMLQLVNQILDFRKIQNGKMRLHVSLFNLNEMVDSFEKEFRVMAEENEVSFTFQLAGEDI 1047 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELE 754 + AD V + NI+SNA FTP+GG I ++ + ++ +RV D+GVG+ +L Sbjct: 1048 MVWADKEKVAIVIRNIISNAFKFTPAGGNIYVTMGVSDDDRHCYVRVEDSGVGIPQSKLS 1107 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + F Q N++ +GTG+GL L+K ++ + G+ Y S KG + I L Sbjct: 1108 EIFERFSQADNARGAYYQGTGIGLALSKEIISLHHGEIYAESPEGKGAVFTIELQL 1163 >gi|330910759|gb|EGH39269.1| sensor protein torS [Escherichia coli AA86] Length = 900 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 132/250 (52%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T A+++P +L D R ++Q+ N+LSNA+ FT G II + E+ ++ V D+G Sbjct: 535 TEIADDVPTVLMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRIDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RVPLRIATAP 658 >gi|291568868|dbj|BAI91140.1| multi-sensor signal transduction histidine kinase [Arthrospira platensis NIES-39] Length = 856 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 101/382 (26%), Positives = 179/382 (46%), Gaps = 33/382 (8%) Query: 457 ILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 + +A+ GI I +EG + N + + G+ E ++ + F L+ P +N Sbjct: 473 VFKASPIGIIITTAQEGRFVDVNDSFLRQLGWSREQVIDRTFED-LQMWDPDQINPIFKR 531 Query: 516 ILSLDLRQ--TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 + + D T+E + L+++ I +L + C DI+E KQ + +L Sbjct: 532 LTNGDRLSNLTVEVRHKSGAIRDWLIAIEPI--QLENTPCLLTLASDITEHKQAE-ELRR 588 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK+ AE+ + KS FLA +SHE+RTPL AI+G+SE+++ +G ++ I + Sbjct: 589 AKEAAEQANQAKSLFLANMSHELRTPLNAILGYSELLQEDA-QDIGQDDFVADLKNIHVA 647 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +L +++D++D SKIE+G++N H E ++ + E + + A + + A Sbjct: 648 GQHLLTLISDIIDFSKIEAGRINFHLEKCQINTLLWEVETTIAPLAEKNHNQLTLEVAPG 707 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIII------------------------ST 729 + + D+ V+Q LN+LSNA FT GQ+I+ S Sbjct: 708 LDLMYTDVTKVRQSLLNLLSNACKFTEQ-GQVILRVWQQLIPATDLPDLPIYHSPESPSE 766 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 T + + +V+DTG+GM ++ PF Q S + GTGLGL + + Sbjct: 767 TLSEISFIFWQVQDTGIGMNERQIATVFSPFTQADESTTRKYGGTGLGLSITHKLCQMMG 826 Query: 790 GKFYIFSTPAKGTLIEIIFPLY 811 G ++ S +G+ + + P Y Sbjct: 827 GDLWVESQLNQGSTLTMRLPQY 848 >gi|255530499|ref|YP_003090871.1| ATPase [Pedobacter heparinus DSM 2366] gi|255343483|gb|ACU02809.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM 2366] Length = 1161 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 83/268 (30%), Positives = 139/268 (51%), Gaps = 16/268 (5%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q K +S + E S +KS+FLA +SHE+RTPL +I+ + ++K R L N I+ Sbjct: 470 QAKEAMSLKAEELEISSKYKSEFLANMSHELRTPLNSILILARILKENRPENL-NEDQIK 528 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 YA I +G +L ++ND+LD+SKIESGK++L P+ + +L A K+I Sbjct: 529 YAGVIHNAGTDLLTLINDILDLSKIESGKLDLSILPLKPLVIKQDMEALFNELAKSKKIS 588 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-------------H 731 T +P +L D ++QI N+LSNA FTP G+I ++ + Sbjct: 589 FHTVLDKELPATLLTDQSRLEQIVKNLLSNAFKFTPEHGEITMTISKASAGTLFFSRQLK 648 Query: 732 TSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 T+ E++I + V+D+G+G+ + + + F Q S + GTGLGL ++K + G Sbjct: 649 TTTEDIIAISVKDSGIGIPADKQKLIFEAFQQADGSTSRKYGGTGLGLSISKELAHILGG 708 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 + + S +G+ + P + + P + Sbjct: 709 EIQVNSKQGEGSTFTLYLPKNNATAPEN 736 >gi|124268770|ref|YP_001022774.1| sensor histidine kinase/response regulator [Methylibium petroleiphilum PM1] gi|124261545|gb|ABM96539.1| sensor histidine kinase/response regulator [Methylibium petroleiphilum PM1] Length = 1153 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 79/266 (29%), Positives = 143/266 (53%), Gaps = 14/266 (5%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L +I ++ L AK++AE + K+ ++A ++HE+RTPL +I+G+++++ Sbjct: 672 LLTREIDAHQRTDAALQAAKEVAESANQAKTRYVAGMTHELRTPLNSILGYAQILLKD-- 729 Query: 616 GPL-GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 G L PR E + I RSG ++ +++ LLD+++IE+G++ L + L + E + + Sbjct: 730 GVLSAAPR--EAVHTIRRSGEHLMGLIDGLLDLARIEAGRLRLEPAALPLPAFLDELVRM 787 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 VQ A KR+ + + +P + AD + ++QI +N+LSNA+ FT G T H Sbjct: 788 VQPQAQAKRLAFVYTHSGRMPAWVHADAKRLRQILINLLSNAVRFTDEG----TVTLHVD 843 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMG 790 ++R V DTG+G+ + ++ PF + ++ RGE GTGLGL + + G Sbjct: 844 CRREVVRFDVVDTGIGIAPQDQQRIFMPFERGAAGRR-RGEPGTGLGLTITALLTSLMGG 902 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHP 816 + + S P +G+ + L + S P Sbjct: 903 ELGLVSAPGRGSTFSVRLYLREVSDP 928 >gi|159897135|ref|YP_001543382.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159890174|gb|ABX03254.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 785 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 135/249 (54%), Gaps = 7/249 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q +LS AK AE S KS FLA +SHE+RTPLTAIIG+++V++ + Y+ Sbjct: 519 QQLTRELSRAKDAAEAASQTKSQFLANMSHELRTPLTAIIGYADVMREDLLDS-NDQIYL 577 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV--QLYANEK 682 + I +G +L ++ND+LD+SKIE+GKM +++E + +++ I+ V Q+ N Sbjct: 578 ADLDRIRSAGAHLLGLINDVLDLSKIEAGKMPVYWEQTRVSILLNDVITTVRPQIDRNHN 637 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 ++I ++ N + D+ ++++ +N+L NA FT G + ++E L++R Sbjct: 638 SLMIDQTYHNLM--FWTDISKLRRVLINLLGNAAKFTDHGTISLSLFLDETDEPACLQIR 695 Query: 743 --DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 DTG+GMT ++ + F Q S + GTGLGL +++ + G + S Sbjct: 696 VCDTGIGMTAEQVANLFQNFSQADASTTRKYGGTGLGLAISRNLCKLMGGDIEVTSELGH 755 Query: 801 GTLIEIIFP 809 G+ + P Sbjct: 756 GSTFIVKLP 764 >gi|312968949|ref|ZP_07783156.1| TMAO reductase sytem sensor TorS [Escherichia coli 2362-75] gi|312286351|gb|EFR14264.1| TMAO reductase sytem sensor TorS [Escherichia coli 2362-75] Length = 900 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 85/250 (34%), Positives = 133/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK + KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKANQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TEIADDVPTALMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRIATAP 658 >gi|262275269|ref|ZP_06053079.1| hypothetical two-component sensor [Grimontia hollisae CIP 101886] gi|262220514|gb|EEY71829.1| hypothetical two-component sensor [Grimontia hollisae CIP 101886] Length = 725 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 97/314 (30%), Positives = 165/314 (52%), Gaps = 29/314 (9%) Query: 497 FTVFLEQNTPSV-MNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC 553 F V+++ P V ++H +T+ + +L +T+E K LG E+L++L + Sbjct: 122 FIVYVDVVRPLVWISHGVTKFGADNLPETIEPPKRPLG----EELVTL---------YTQ 168 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y+ T+ + E+ E L AK AE+ + KS+FLA +SHEIRTP+ IIG + ++K Sbjct: 169 YNDTVAKMREYNAE---LKSAKMQAEQANQKKSEFLANMSHEIRTPMNGIIGMASLLKGT 225 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 PL + E+ ++ S +LDI+ND+LD SKIE+GK+ L ++L E + Sbjct: 226 ---PLDEEQR-EFIEMLETSSLSLLDIINDILDFSKIEAGKLELDSVELNLFELCKDIEH 281 Query: 674 LVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 L +L EK + N+ P ++ D ++Q+ +N++ NA+ FT S G++ +S Sbjct: 282 LFRLRTKEKGLEFECGLDQNLTPLLVGDAPRLRQVMINLVGNAVKFTQS-GKVSVSIRQV 340 Query: 733 S----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + N V V DTG+G+ +L+ + F Q S GTGLGL ++ +V+ Sbjct: 341 AEAGDNITVTFEVEDTGIGIPADKLKTVFEKFEQADGSMSRNFGGTGLGLAISSQIVELM 400 Query: 789 MGKFYIFSTPAKGT 802 G+ + S +G+ Sbjct: 401 GGEIEVESREGEGS 414 >gi|295402149|ref|ZP_06812108.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|312112731|ref|YP_003991047.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] gi|294975832|gb|EFG51451.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|311217832|gb|ADP76436.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] Length = 609 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 110/371 (29%), Positives = 175/371 (47%), Gaps = 39/371 (10%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E E +L S+L +DG+ +R G I+ N A + E +L + Sbjct: 259 EGERRKLESVLTHMTDGVIATDRRGRIILINDAALNILNVSRETVLSSSII-----DVLG 313 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLL---SLRIIIKKLPFSSCYSLTMHDISEW 564 + + Y E L L+ + +L I ST EE + SL +I K+ F + + +HDI+E Sbjct: 314 IGDQYTFETL-LEEQDSL--ILDFSTDEELYILRASLSVIQKETGFVNGLIVVLHDITE- 369 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG-NPRY 623 EK + +F+A VSHE+RTPLT + + E + + PR+ Sbjct: 370 -------------QEKIDRERREFVANVSHELRTPLTTMKSYLEALAEGAWQDKAIAPRF 416 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 IE I ++ +VNDLL +SK++S L+ V+ E + I +L +E Sbjct: 417 IEV---IQTETERMIRLVNDLLQLSKLDSKDYKLNKSWVNFSEYFHKVIDRFELTKSEN- 472 Query: 684 ILIRTSFANNIPR----ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 +F IP+ I D + Q+ NI+SNAI ++P GG+I ++E +I+ Sbjct: 473 ----ITFVRKIPKEAIFIEIDEDKITQVLDNIISNAIKYSPQGGKITFRVRELADE-IIV 527 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V D GVG+ +L K + F ++ ++ + GTGLGL +AK +V A+ G + S Sbjct: 528 SVSDEGVGIPKADLAKVFERFYRVDKARSRKLGGTGLGLAIAKEVVIAHGGTIWAESKEH 587 Query: 800 KGTLIEIIFPL 810 KGT I PL Sbjct: 588 KGTTIFFTLPL 598 >gi|326576541|gb|EGE26449.1| two-component system sensor histidine kinase [Moraxella catarrhalis CO72] Length = 988 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 87/263 (33%), Positives = 133/263 (50%), Gaps = 24/263 (9%) Query: 557 TMHDIS----EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 T HD+ E + + + +A+ A S KS FLA +SHE+RTPL +I GF ++ Sbjct: 289 TEHDLQQAFDEMEMQNISIRNARDAAISTSQAKSAFLANISHELRTPLNSIDGFINLLA- 347 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 R G L + + Y I +S +L +VND+LD SKIE+GK+ L L +AV + + Sbjct: 348 -RKGELTGEQNL-YVQTIKKSSAHLLALVNDVLDFSKIEAGKLILDSHDFDLYDAVYDVV 405 Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 ++ A EKR+ + F +++P RI+ D VKQI N++ NAI FT G ++ + Sbjct: 406 DMLSPAALEKRLRLAVLFYDDVPTRIIGDSLRVKQILTNLVGNAIKFTDMGSVVVRVSLA 465 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD----- 786 + + V DTG G++ + E+ + FGQ S R GTGLGL ++K + Sbjct: 466 EKTGYLCIEVEDTGKGISESDKEQLFQSFGQGDLSVTRRYGGTGLGLVISKQLTQLMGGS 525 Query: 787 -----------ANMGKFYIFSTP 798 AN G + F P Sbjct: 526 IGFIDNRSENIANAGATFWFEMP 548 >gi|183220127|ref|YP_001838123.1| putative two-component sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910247|ref|YP_001961802.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774923|gb|ABZ93224.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778549|gb|ABZ96847.1| Putative two-component sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 1164 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 131/234 (55%), Gaps = 10/234 (4%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ K +N L A++ AE S KS+FLA +SHEIRTPL +IGF++++ Sbjct: 628 THTDITHRKILENDLIIAREKAENASIAKSNFLANMSHEIRTPLNGVIGFADLLMRTDL- 686 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 N +Y + S +LD++ND+LD SKIESGKM L+ E V++ + + + +V+ Sbjct: 687 ---NQVQRKYMETVHLSALSLLDLINDILDFSKIESGKMELYKERVNIFDLLHQIAEIVK 743 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--- 732 A EK + + + + +PR + D ++QI LN++ NA+ FT G+I I T T Sbjct: 744 HKAYEKGLELILNISPKVPRNVFVDSLRLRQILLNLIGNALKFTLK-GEIQIKLTATPVN 802 Query: 733 SNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 NE E + V DTG+G+ K + F Q +S + GTGLGL ++ ++ Sbjct: 803 QNEFEFLFEVIDTGIGINKENQNKIFEVFAQADSSTTRQFGGTGLGLSISSKLL 856 >gi|332702934|ref|ZP_08423022.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553083|gb|EGJ50127.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 938 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 75/259 (28%), Positives = 136/259 (52%), Gaps = 15/259 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++ K +++L AK+IAE+ S KS+FLA +SHEIRTPL ++G +E+ ++ Sbjct: 534 RDVTALKALEHELRQAKEIAEEASRAKSEFLAHMSHEIRTPLNGMLGMTELAESATL--- 590 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 R + + SGN +L ++ND+LD+S+IE+G++ + L V + + Sbjct: 591 -EERTRHFLHLARESGNHLLGLINDILDLSRIEAGELRIERYGFDLRVEVRLLAESMSVL 649 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-- 735 A +K +L+ IP +L D ++QI +N++ NA+ FT GG +++ + Sbjct: 650 AEQKGLLLECRLDELIPNDLLGDAGRLRQILVNLVGNALKFTRQGGVLLLVEMEETRAVG 709 Query: 736 ----EVILRVRDTGVGMTNYELEKAMKPFGQIPNS-QQIRGEGTGLGLPLAKAMVDANMG 790 ++ V DTG+G+ + F ++ NS +Q+ GTGLGL + + +V+ G Sbjct: 710 QGDIRLLFSVSDTGIGIDKATFRTIFENFTRLDNSAEQV---GTGLGLSICRRLVEMMGG 766 Query: 791 KFYIFSTPAKGTLIEIIFP 809 + ++ S G+ + P Sbjct: 767 RIWLESEVGVGSTFHVSLP 785 >gi|226310981|ref|YP_002770875.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] gi|226093929|dbj|BAH42371.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] Length = 587 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 97/365 (26%), Positives = 175/365 (47%), Gaps = 34/365 (9%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L +L + G+ I+ + I+ N AV KL G +I+ K + +E ++ Y Sbjct: 249 RLAGVLTNMTSGVIFISEQRRIMLVNPAVEKLLGTAGHEIVGK---LHIEAGKSFGLSQY 305 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF------SSCYSLTMHDISEWKQ 566 + LD + + +E++L + P+ S + +HDI++ ++ Sbjct: 306 IDR--CLDRSEKFRQEVHIYYPQERILDVNF----APYINFKGESRGVVVVLHDITDIRR 359 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE- 625 EK +S+F+A VSHE+RTP+T+I GF+E + G + + Sbjct: 360 -----------LEK---MRSEFVANVSHELRTPITSIKGFTETLLE---GAMQDEETCRN 402 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + I + ++ D+LD+SKIE ++ LH V L + +S A++++ A K + Sbjct: 403 FLQIISDESERLYRMIRDILDLSKIEQKRIPLHLGQVHLQDLISSAVAIMHDQAQRKELT 462 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 I ++ D ++QI LN+L+NAI +T GG+I I T +E + ++V DTG Sbjct: 463 ITLPSPKPDIWLMTDKDCLQQIILNLLTNAIAYTQEGGKISIKT-EADSENITIQVMDTG 521 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ EL + + F ++ ++ GTGLGL + K +V+ G + S +GT Sbjct: 522 IGIPEKELTRIFERFYRVDKARSRDSGGTGLGLAIVKHLVENLHGHISVESKEGRGTTFT 581 Query: 806 IIFPL 810 + PL Sbjct: 582 VTLPL 586 >gi|219666355|ref|YP_002456790.1| histidine kinase [Desulfitobacterium hafniense DCB-2] gi|219536615|gb|ACL18354.1| histidine kinase [Desulfitobacterium hafniense DCB-2] Length = 582 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 134/243 (55%), Gaps = 5/243 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KNQRFGPLGNPRYIEYAN 628 +L + +++S +K+DFLA VSHE+RTPLTAII F+E++ K +RF + + Sbjct: 334 QLEKVNTLLKEDSQYKADFLAMVSHELRTPLTAIIIFAEILLKKKRFEDSSEEQIL---C 390 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I + ++L ++N++LD++++E+G+ +L E V L + ++ +++ A I + Sbjct: 391 EIKENSEVLLHMINNILDLARLETGRNSLSIETVDLVDVINNVECVIRPLAQRNDIHLTA 450 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVG 747 +P I D V++I N+ NAI FTP GG++ I + + + + V+D G+G Sbjct: 451 RVERGVPLIQGDYEKVRRIIENLAGNAIKFTPLGGKVNIQASLAEDPHYVKITVQDDGIG 510 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 ++ + F Q+ +S + G+GLGL LAK + + + G + S KG+ ++ Sbjct: 511 ISKENQAHIFEKFIQVDSSSSRQYNGSGLGLALAKELTELHGGVISVESDLNKGSTFIVL 570 Query: 808 FPL 810 P+ Sbjct: 571 LPI 573 >gi|255320871|ref|ZP_05362045.1| sensor protein GacS [Acinetobacter radioresistens SK82] gi|262380236|ref|ZP_06073391.1| sensor protein gacS [Acinetobacter radioresistens SH164] gi|255302040|gb|EET81283.1| sensor protein GacS [Acinetobacter radioresistens SK82] gi|262298430|gb|EEY86344.1| sensor protein gacS [Acinetobacter radioresistens SH164] Length = 934 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 89/284 (31%), Positives = 152/284 (53%), Gaps = 24/284 (8%) Query: 526 EKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLS----------- 572 + I + ST E +LL I ++K+L FS L + + +E ++ + + Sbjct: 219 QHIIINSTGELRLLQRDIANVVKRLHFSF---LELKEHTEQTEDDLRRTLDTLEVQNITY 275 Query: 573 -HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 A+ A + KS FLA +SHE+RTPL +I GF ++ Q L N + + Y I Sbjct: 276 RQARDQAISANQAKSVFLANISHELRTPLNSIDGFIHLMLRQ--DNLSNEQNL-YLQTIR 332 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 +S +L ++ND+LD SKI++GK+ L P L+EA+ + + ++ A +K+I + + Sbjct: 333 KSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKQIDMAFYYG 392 Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---RVRDTGVG 747 +++P+ I+ D+ KQI N++SNAI FTP G I+ + E L V+D+G+G Sbjct: 393 DDVPQYIVGDVLRFKQILTNLISNAIKFTPDGEIIVRARMEQDGMEQCLLHFSVQDSGIG 452 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 ++ + +K + F Q S + GTGLGL ++K +V G+ Sbjct: 453 LSGTDRKKLFESFSQGDTSVTRQFGGTGLGLAISKQLVHLMQGQ 496 >gi|228941767|ref|ZP_04104314.1| hypothetical protein bthur0008_44030 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974691|ref|ZP_04135257.1| hypothetical protein bthur0003_44440 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228785094|gb|EEM33107.1| hypothetical protein bthur0003_44440 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817979|gb|EEM64057.1| hypothetical protein bthur0008_44030 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 558 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 101/376 (26%), Positives = 182/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ +L++ Sbjct: 211 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEE--------YLDRLYYE 262 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 +H TEI+ L +E+I + K K + L + I++ F Sbjct: 263 SFHH--TEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 315 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 316 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 359 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + + + Sbjct: 360 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHM 418 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+GG + + Sbjct: 419 VLDNKAGEKEISLQVNVLKR-ASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDK 477 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 478 YNAYI-KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 536 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 537 VDSEVGEGTTFTVVLP 552 >gi|164504822|gb|ABY59649.1| BarA [Yersinia ruckeri] Length = 865 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 131/237 (55%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ Q P +Y Sbjct: 272 ELGLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTR----QTLKTSLTPTQTDYLQT 327 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RS N +L I+ND+LD SK+E+ K+ L P L E + E + L+ A+EK + + Sbjct: 328 IQRSANNLLSIINDVLDFSKLEAEKLVLEHIPFPLRETLDEVVILLAHTAHEKGLELTMQ 387 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIIST-THTSNE-EVILRVRDTG 745 N++P +++ D ++Q+ N+L NAI FT +G I +S +HT + ++ + ++DTG Sbjct: 388 VNNDVPEQVVGDSMRLQQVMTNLLGNAIKFTENGNVDIHVSLRSHTRRQIKLAVEIQDTG 447 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++ + + + F Q S R GTGLGL + + +V G S +G+ Sbjct: 448 IGISEQQQSQLFQAFRQADASISRRHGGTGLGLVITERLVKEMDGDISFHSELNRGS 504 >gi|117620646|ref|YP_855451.1| virulence sensor protein BvgS, putative [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562053|gb|ABK39001.1| virulence sensor protein BvgS, putative [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1425 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 79/257 (30%), Positives = 134/257 (52%), Gaps = 7/257 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DI+ K +++ L A+ AE+ +S FLA +SHE+RTP++ + G E+++ Sbjct: 800 VIQDITALKHQEHDLREARAYAEQAMQVRSRFLATMSHELRTPISGMHGMLELLQMSELN 859 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + RY+ N + + NL L +VND+LD SKIE+G++ LH++ L + + I Sbjct: 860 D--DQRYL-LRNVVTSTNNL-LYLVNDVLDFSKIEAGQLQLHYQDCRLASVICDVIRGHA 915 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A+ K + + +A +P + D V Q+ N+L+NA+ FT G +I I + E Sbjct: 916 TLAHGKGLKVTLEWAPEVPDQARIDAVRVGQVLSNLLNNAVKFTERG-EIRIQVSF-EKE 973 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + + V DTG+G+ + ++ PF Q+ + R GTGLGL + + G + Sbjct: 974 RLAIAVSDTGIGIAEDKQDRLFTPFEQVESDITRRFGGTGLGLAICHQLAQKMGGTLVLE 1033 Query: 796 STPAKGTLIEIIFPLYD 812 S P GT + FPL + Sbjct: 1034 SKPGHGTRLTFDFPLAE 1050 >gi|91772833|ref|YP_565525.1| multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711848|gb|ABE51775.1| pleC (Non-motile and phage-resistance protein) -like multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 519 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 134/248 (54%), Gaps = 9/248 (3%) Query: 569 NKLSHAKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 N+LS K EK + K++FL+ +SHE++TPL +I G+ E++ + G L N Sbjct: 273 NELSEVNKELEKVNDDLKSLDVMKNEFLSNISHELKTPLVSIKGYVELVFDGSLGTL-NE 331 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + + N + R+ + ++ LL IS +ES + H E V + E + ++ V L + Sbjct: 332 QQKKAVNIVLRNSERLRRLIESLLFISGLESRAIQYHIEKVRIAEIIDNVVNDVNLQIED 391 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 K +LI + N+P I D + + N++ NAI FTPS G+II++ + +++ + V Sbjct: 392 KGLLIENNVPENLPLINGDKARLSDMLTNLVDNAIKFTPSEGRIILN-AYEEEDDLHIEV 450 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +DTG+G+ + + F Q+ S + R GTG+GL + K +V+A+ G +I S KG Sbjct: 451 KDTGIGIPKELIPNLFQRFYQVDASIKRRYGGTGVGLYICKNIVEAHKGNIWIESEEEKG 510 Query: 802 TLIEIIFP 809 T + I P Sbjct: 511 TTVHIRLP 518 >gi|17230389|ref|NP_486937.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17131991|dbj|BAB74596.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 646 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 84/260 (32%), Positives = 140/260 (53%), Gaps = 14/260 (5%) Query: 560 DISEWKQ---EKNKLSHAKKIAEKESSH----KSDFLARVSHEIRTPLTAIIGFSEVIKN 612 DIS+ K+ E+N+L +K+A E+ K +F+A VSH++R+PL AI+G+S++++ Sbjct: 392 DISDRKRAETERNQLLQLEKLARAEAEAANHTKDEFVAMVSHDLRSPLNAILGWSQLLRT 451 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 ++ R +E I+R+ ++ DLLD+S++ GK+ L F V L + AI Sbjct: 452 RQLDETTFTRALET---IERNAQSQSKLLEDLLDMSRVLRGKLQLEFCQVDLAAIIGVAI 508 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 A K I +++ +IP I D+ + Q+ N+LSNAI FTP GQI + ++T Sbjct: 509 ETAYPSAKAKNIHLKSVIDESIPLIPGDINRLLQVLGNLLSNAIKFTPPEGQITVQLSYT 568 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 +E I V DTG+G+ + L + Q Q + G GLGL +A+ +++ + G Sbjct: 569 DSEAHIT-VTDTGIGIKSEFLPYVFDRYRQADC--QHKQHGLGLGLAIARYLIELHGGAI 625 Query: 793 YIFS-TPAKGTLIEIIFPLY 811 ++ S +GT I LY Sbjct: 626 HVTSPGEGQGTTFTIKLLLY 645 >gi|326561891|gb|EGE12226.1| two-component system sensor histidine kinase [Moraxella catarrhalis 7169] gi|326563438|gb|EGE13703.1| two-component system sensor histidine kinase [Moraxella catarrhalis 12P80B1] gi|326568888|gb|EGE18957.1| two-component system sensor histidine kinase [Moraxella catarrhalis BC1] gi|326569188|gb|EGE19249.1| two-component system sensor histidine kinase [Moraxella catarrhalis BC7] gi|326578011|gb|EGE27875.1| two-component system sensor histidine kinase [Moraxella catarrhalis O35E] Length = 988 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 87/263 (33%), Positives = 133/263 (50%), Gaps = 24/263 (9%) Query: 557 TMHDIS----EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 T HD+ E + + + +A+ A S KS FLA +SHE+RTPL +I GF ++ Sbjct: 289 TEHDLQQAFDEMEMQNISIRNARDAAISTSQAKSAFLANISHELRTPLNSIDGFINLLA- 347 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 R G L + + Y I +S +L +VND+LD SKIE+GK+ L L +AV + + Sbjct: 348 -RKGELTGEQNL-YVQTIKKSSAHLLALVNDVLDFSKIEAGKLILDSHDFDLYDAVYDVV 405 Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 ++ A EKR+ + F +++P RI+ D VKQI N++ NAI FT G ++ + Sbjct: 406 DMLSPAALEKRLRLAVLFYDDVPTRIIGDSLRVKQILTNLVGNAIKFTDMGSVVVRVSLA 465 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD----- 786 + + V DTG G++ + E+ + FGQ S R GTGLGL ++K + Sbjct: 466 EKTGYLCIEVEDTGKGISESDKEQLFQSFGQGDLSVTRRYGGTGLGLVISKQLTQLMGGS 525 Query: 787 -----------ANMGKFYIFSTP 798 AN G + F P Sbjct: 526 IGFIDNRSENIANAGATFWFEMP 548 >gi|254413753|ref|ZP_05027522.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196179350|gb|EDX74345.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 1022 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 135/237 (56%), Gaps = 9/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK+ A+ + KS+FL+ +SHE+RTP+ AI+GF+++++ + P + Y+E N+ Sbjct: 543 ELQQAKEAADAANRAKSEFLSNMSHELRTPMNAILGFTQLMQRDQSLPAQHQGYMEIINH 602 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 SG +L+++ND+L++SKIE+G++ L +L + + S+ QL A K + +R Sbjct: 603 ---SGEHLLELINDVLEMSKIEAGRITLAEIDCNLHQLLRRLESMFQLKAKSKGLRLRVQ 659 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTG 745 + +P+ I D ++Q+ +N+LSNAI FT + GQ+ + + + + +V DTG Sbjct: 660 RDDTVPQWIRTDEHKLRQVLINLLSNAIKFTEN-GQVTLEVSGVRQGKTVNLGFKVADTG 718 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+ + + + F Q Q EGTGLGL +++ V G+ I S +G+ Sbjct: 719 PGIAKEDRNELFQAFKQTKLGQNTY-EGTGLGLKISQKFVQLMGGEITITSELGQGS 774 >gi|312890877|ref|ZP_07750406.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311296660|gb|EFQ73800.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 818 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 84/261 (32%), Positives = 139/261 (53%), Gaps = 9/261 (3%) Query: 555 SLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 S+ +H DI+ K+ ++ L AKKIAE+ S K FLA +SHEIRTP+ AI+G S ++ Sbjct: 289 SIGIHLDITGQKRLESDLIEAKKIAEESSRAKEIFLANMSHEIRTPINAILGLSRLLTK- 347 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 N + Y I +S ++ I+ND+LD++KIE+G++ + +L + + + Sbjct: 348 ---TTQNSQQRTYTEAIIKSAENLIVIINDILDLTKIEAGQIQIENIEFNLADLIKQLEG 404 Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII---IST 729 +++ EK + + + ++P +L D + Q+ LN++ NAI FT GG + + Sbjct: 405 VLRYKTEEKGLEFDATTSVHVPPVLMGDPYRINQVLLNLVGNAIKFTEKGGIEVWCKLVD 464 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 E+ V+DTGVGM L+ F Q S + GTGLGL +++ +V+ Sbjct: 465 QQKDVNEIQFTVKDTGVGMEPEYLKHIFTNFSQEDASITRKHGGTGLGLSISRQLVELMG 524 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 GK ++ ST GT+I L Sbjct: 525 GKIHVESTKGLGTVISFTLLL 545 >gi|262164925|ref|ZP_06032663.1| sensor protein TorS [Vibrio mimicus VM223] gi|262027305|gb|EEY45972.1| sensor protein TorS [Vibrio mimicus VM223] Length = 968 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 82/257 (31%), Positives = 128/257 (49%), Gaps = 11/257 (4%) Query: 559 HDISEWKQEKNK--LSHAKK--IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 H +SE + N+ L+HAK AE+ S KS FLA +SHEIRTP+ ++G + +++ Sbjct: 440 HQLSEMNHKLNQEVLNHAKARYQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQETS 499 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 Y I+RSG +L I+ND+LD SKIE+G + +H L V E L Sbjct: 500 LTSTQQ----HYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHQAHFDLYRLVRETHEL 555 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +Q A EK I + F +++ R D + Q+ N++ N I FT G I + Sbjct: 556 MQSRALEKGITLSYQFEDDVTRYWQGDEIRIGQVLNNLVGNGIKFTEQGHVCIRISQDPE 615 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + + V D+G+G+ + F Q + R +GTGLGL +++ +V A G+ Sbjct: 616 GQGIRFAVEDSGIGIAEQDQASLFDAFTQAEAGR--RKQGTGLGLAISRKLVQAMGGELQ 673 Query: 794 IFSTPAKGTLIEIIFPL 810 + S +G+ I PL Sbjct: 674 LSSQLGQGSCFSFILPL 690 >gi|291566667|dbj|BAI88939.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 1062 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 82/251 (32%), Positives = 135/251 (53%), Gaps = 11/251 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK-NQRFGPLGNPRY 623 +++ +L AK+IA+ + KS+FLA +SHE+RTPL AI+GF++++ NQ P N ++ Sbjct: 566 QEQARQLQQAKEIADAANRSKSEFLANMSHELRTPLNAILGFAQLMSTNQNLAP-ENRQH 624 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 IE I+RSG +L ++ND+L++S+IE+G+ L L E + L +L A K Sbjct: 625 IE---IINRSGEHLLGLINDILEMSRIEAGRATLQVNGFDLYEFLQGLEDLFKLRATSKN 681 Query: 684 I-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL--- 739 + LI I I AD + ++Q+ +N+L NAI FT G + + +H + + L Sbjct: 682 LHLIFERPKGLIRHIKADEKKLRQVLINLLGNAIKFTDEGS-VTVRVSHQNRDASDLLQF 740 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ + E + F Q EG+GLGL +A+ V + + S Sbjct: 741 EVEDTGLGIAPEDCEGLFEAFAQTETGLNA-SEGSGLGLAIAQQFVKLMGDEITVRSCLN 799 Query: 800 KGTLIEIIFPL 810 +G+ P+ Sbjct: 800 RGSTFSFTIPV 810 >gi|83646319|ref|YP_434754.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83634362|gb|ABC30329.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 778 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 94/362 (25%), Positives = 179/362 (49%), Gaps = 26/362 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +I++ DGI I+ G+I + N A ++FGY D++ ++ + + S + Y+ + Sbjct: 152 AIVDTVVDGIITIDGAGLIDTFNPAAERIFGYAASDVIGVNVSILMPEPYHSEHDGYIAK 211 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL--SH 573 + T E +G +E + + S + + + +SE E ++ Sbjct: 212 FM-----HTGEAKVIGVGRE--------VTGRRRDGSTFPMELA-VSEMTVEGRRMFTGV 257 Query: 574 AKKIAEKE--SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYI 630 + I +++ K +F+A VSHE+RTPLTAI G ++ + G L P+ + + Sbjct: 258 VRDITDRKRMERQKDEFIATVSHELRTPLTAIGGALGLVLGKHGGEL--PKTVLKMLKVA 315 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 R+ + + ++ND+L+I K+ESG + E L + ++ + +A + ++ +R F Sbjct: 316 HRNCDRLTLLINDILEIEKLESGALKFELEDQDLATLIQRSLEDHKEFAGKYQVELR--F 373 Query: 691 ANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 +N+ PR + D R Q+ N++SNA+ ++P GG + I+ + +N V + V+D G G+ Sbjct: 374 SNSPPRPWVHVDERRFHQVMSNLISNAVKYSPRGGAVDIAVSDVAN-RVRVHVKDYGKGI 432 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + F Q +S GTGLGL +AKA+V+ + G+ FS +G Sbjct: 433 PEDFHSRVFERFSQADSSDTREQGGTGLGLSIAKAIVEHHGGEIGFFSKTNEGAEFYFDL 492 Query: 809 PL 810 P+ Sbjct: 493 PI 494 Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 4/114 (3%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +I+EA +DGI I+ +G+I S N A ++FGY E+ + + + + + YL Sbjct: 24 AIVEAVADGIITIDNQGVIESFNPAAERIFGYDAEEAVGRNVQMLMPSPFREHHDSYLAN 83 Query: 516 ILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWK 565 L Q + + LG K+ L L + + ++ ++ + DISE K Sbjct: 84 YLQTGNAQIIGVGREVLGLRKDGSLFPLDLAVTEMQVEGRRMFTGVVRDISERK 137 >gi|70729884|ref|YP_259623.1| sensory box histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] gi|68344183|gb|AAY91789.1| sensory box histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] Length = 1198 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 136/252 (53%), Gaps = 11/252 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DISE +Q +L+ AK A+K + K+ FLA +SHEIRTP++A++G E+ +K G Sbjct: 679 DISERQQLLQELTQAKDEADKANRAKTTFLATMSHEIRTPMSAVLGMLELALKRADQGQF 738 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P IE A S +L+++ D+LDI++IESG ++L E +L V + Sbjct: 739 DRPS-IEVAY---SSAQTLLELIGDILDIARIESGHLSLSPERANLRGLVEPVFRVFDGL 794 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE- 735 A +K + + ++ +L D KQI N++SNAI FT GG Q+ ++T + E Sbjct: 795 ARQKGLRLELELDSHAGDDVLVDPLRFKQILSNLISNAIKFTQQGGVQVRLATGPSEPEY 854 Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 ++L V+D+G+ + L++ KPF Q+ Q GTGLGL + + + + G + Sbjct: 855 LALLLTVKDSGIAADD--LQQLFKPFSQVLGQHQDARSGTGLGLVICRTLCEMMGGTLTL 912 Query: 795 FSTPAKGTLIEI 806 S P GT + + Sbjct: 913 HSQPGLGTEVRV 924 >gi|302036411|ref|YP_003796733.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii] gi|300604475|emb|CBK40807.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii] Length = 1340 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 136/242 (56%), Gaps = 10/242 (4%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + L AK+ AE + KSDFLA +SHEIRTP+ AI+G ++++ PL N E Sbjct: 695 EAETALMSAKEAAEFANRAKSDFLATMSHEIRTPMNAIVGMADLLSET---PL-NEDQRE 750 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y +G+ +L ++ND+LD+SKIE+G ++L L++ V A LV + A+EK + Sbjct: 751 YVQIFRDAGSNLLSLINDVLDLSKIEAGHLDLDLVDFDLNDLVQRAAELVAVRASEKNLE 810 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILR 740 + ++P ++ D ++Q+ LN+L NAI FT G++++ + ++ Sbjct: 811 LAYQIQPDVPTSLVGDPNRLRQVLLNLLGNAIKFTDE-GEVVLRVERDPQADGPGTILFT 869 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 VRDTG+G+ +L + F Q+ +S GTGLGL +++ +V+ GK ++ S + Sbjct: 870 VRDTGIGIPTDKLAAIFERFTQVDSSTTRPYSGTGLGLTISRRLVERMGGKMWVDSELGR 929 Query: 801 GT 802 G+ Sbjct: 930 GS 931 >gi|323528028|ref|YP_004230180.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] gi|323385030|gb|ADX57120.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] Length = 1197 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 131/233 (56%), Gaps = 3/233 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ S +KS+FLA +SHE+RTPL + + +++++ R G L + YA I S + +L Sbjct: 483 EQSSRYKSEFLANMSHELRTPLNSSLILAKLLQQNRTGNL-TEEQVRYAETIHASNSDLL 541 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRTSFANNIPRI 697 ++ND+LD+SK+E+G++++ E VSLD + L + A K + L+ I Sbjct: 542 VLINDILDLSKVEAGQVSVELETVSLDATLQSLEELFRPMAGAKHLNLVFDRLPGAPDSI 601 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 ++D + V QI N+LSNA+ FT G ++ +S ++ + + VRD+G+G+ + +LE Sbjct: 602 VSDGQRVTQILRNLLSNAVKFTERG-EVALSVAPADDDMLRIDVRDSGIGIASDKLEMIF 660 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F Q S + G+GLGL +++ G+ + S KG++ + PL Sbjct: 661 EAFQQADGSTSRQYGGSGLGLSISREFARLLGGRITVASEVGKGSVFTLWLPL 713 >gi|229048295|ref|ZP_04193863.1| hypothetical protein bcere0027_42630 [Bacillus cereus AH676] gi|228723020|gb|EEL74397.1| hypothetical protein bcere0027_42630 [Bacillus cereus AH676] Length = 558 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 101/376 (26%), Positives = 182/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ +L++ Sbjct: 211 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEE--------YLDRLYYE 262 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 +H TEI+ L +E+I + K K + L + I++ F Sbjct: 263 SFHH--TEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 315 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 316 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 359 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + + + Sbjct: 360 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHM 418 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+GG + + Sbjct: 419 VLDNKAGEKEISLQVNVLKR-ASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDK 477 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 478 YNAYI-KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTIT 536 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 537 VDSEVGEGTTFTVVLP 552 >gi|46201520|ref|ZP_00054895.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 1099 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 109/384 (28%), Positives = 181/384 (47%), Gaps = 25/384 (6%) Query: 441 RINKRKMEIEVM--QLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVE----DIL 493 R+ + EIE + + SILE+ DGI I+ G NRA +KL + P E DIL Sbjct: 316 RLKASQAEIERLAERNNSILESVDDGIVGIDLNGRATFVNRAAAKLLDFEPAELVGSDIL 375 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 P + S+ L S+ K GS + ++ ++ K Sbjct: 376 --PLMALDMETAESLYQILLRLADSIRDDTASFKRRDGSPLPVEYIASPVMDKGNQVGVV 433 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 L DI++ + + +L AK+ AE + KS+FLA +SHEIRTP+ +IG + ++ + Sbjct: 434 --LGFRDITQRRLVERQLREAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDT 491 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + +A I SG +L ++ND+LD SK+E+GK++L + L V + Sbjct: 492 KL----TEEQRHFAETIRDSGESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVD 547 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRS----VKQIALNILSNAIHFTPSGG---QII 726 ++ A+ K I I + PR+ +RS ++Q+ +N+ NA+ FT GG ++ Sbjct: 548 ILAPRAHAKGIEIASLID---PRLRMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEVT 604 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + + V VRDTG+G+ + F Q+ S R GTGLGL + + + + Sbjct: 605 LLERPGAQPMVHFDVRDTGIGIPPEAQGRLFSMFMQVDASTARRYGGTGLGLAICRRLAE 664 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPL 810 G+ + S P KG+ + P+ Sbjct: 665 LMGGEVGLESQPGKGSRFWMSVPM 688 >gi|228923332|ref|ZP_04086620.1| hypothetical protein bthur0011_43110 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836286|gb|EEM81639.1| hypothetical protein bthur0011_43110 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 545 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 100/376 (26%), Positives = 181/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ L + + Sbjct: 198 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEEYLDRLY---------- 247 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 + + TEI+ L +E+I + K K + L + I++ F Sbjct: 248 YESFHHTEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 302 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 303 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 346 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + + + Sbjct: 347 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHM 405 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+GG + + Sbjct: 406 VLDNKAGEKEISLQVNVLKR-ASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDK 464 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 465 YNAYI-KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTIT 523 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 524 VDSEVGEGTTFTVVLP 539 >gi|254423157|ref|ZP_05036875.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196190646|gb|EDX85610.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 1125 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 103/349 (29%), Positives = 170/349 (48%), Gaps = 17/349 (4%) Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 A+ N EG N A K+ GY ++ +P+ F+ + + +T ++ +L + Sbjct: 641 AVGNFEGYFTQVNPAWVKVLGYTSSELTAQPYLFFIHPD-----DREMTAAIAANLTASE 695 Query: 526 EKITLGSTKEEKLLSLRIIIKK---LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 + I + K S R ++ K L + DI+ KQ + A++ AE+ + Sbjct: 696 DPIEFENRYRCKDGSYRWLLWKVTALIAEGRFYAVARDITTRKQVALEREAAREAAERAN 755 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 K +FLA VSHE+R+PL I+G+S+++K G L R I+R+ L + ++ Sbjct: 756 RIKDEFLAVVSHELRSPLNPILGWSQLLKR---GTLDEKRTKLALASIERNAQLQVQLIG 812 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702 DLLDIS+I K+ L PV L+ + A+ V+ EK I I T+ ++ D Sbjct: 813 DLLDISRILRNKLILDKAPVDLESIIFAALETVKQATAEKSIHIETTITPCT--VVGDAV 870 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 ++Q+ N+LSNA+ FTP G I ++ T + EV++ V DTG G+ L + F Q Sbjct: 871 RLQQVVWNLLSNAVKFTPRDGSITVTVTADVS-EVVIEVSDTGKGIAADFLPFVFEHFRQ 929 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA--KGTLIEIIFP 809 S + G GLGL + + +VD + G + S P +GT + P Sbjct: 930 ENYSTTRKFGGLGLGLAIVRQIVDLHDGTVAVRS-PGENQGTTFSVCLP 977 >gi|189468425|ref|ZP_03017210.1| hypothetical protein BACINT_04822 [Bacteroides intestinalis DSM 17393] gi|189436689|gb|EDV05674.1| hypothetical protein BACINT_04822 [Bacteroides intestinalis DSM 17393] Length = 497 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 91/269 (33%), Positives = 138/269 (51%), Gaps = 15/269 (5%) Query: 545 IKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 +K+ PF C S ++K + +L+ A + A + KS FLA +SHEIRTPL Sbjct: 237 LKETPFRVVGICMS-----TQKYKDTEERLNEALRKARRSDELKSIFLANMSHEIRTPLN 291 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 AI+GFS ++ L IE+ + I+++ L++ +++D+LD+SKIES M F Sbjct: 292 AIVGFSSLLAYGE-SDLTKEDIIEFTSLIEKNSRLLMVLISDILDLSKIESNTMEFSFCS 350 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 VSL ++E S ++ E L+ + + D + Q+ N+++NAI FT S Sbjct: 351 VSLHRVLNEIGSAQRINMREGVELLLDLPGQEVT-VYTDPARLSQVINNLVNNAIKFT-S 408 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 G I I ++ V + V DTG GM+ LE F + + +Q GTGLGL + Sbjct: 409 EGNIRIGYRPAASGYVNIFVEDTGTGMSREVLEHIFDRFYKGDSFKQ----GTGLGLSIC 464 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 K +V GK + STP KGT I PL Sbjct: 465 KTIVKRFEGKIEVTSTPGKGTCFTITLPL 493 >gi|170691461|ref|ZP_02882626.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis C4D1M] gi|170143666|gb|EDT11829.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis C4D1M] Length = 1490 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 86/243 (35%), Positives = 129/243 (53%), Gaps = 12/243 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L+ A+ +AE S K DF A +SHEIRTP+ ++G EV++ PL N E Sbjct: 833 ELARARDLAEAASRAKDDFFAMMSHEIRTPMNGVLGLVEVLERT---PL-NSDQGEMLGM 888 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I S +L I++DLLD SKIE+G++ + EP+ L E V A+ L+ A+EK + +R Sbjct: 889 IHESAGALLQILDDLLDYSKIEAGRLTIEAEPIDLREMVDNAVGLLAGRAHEKGLKVRVD 948 Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHTSNEEVILRVRD 743 A+++ L D ++Q+ N+L NAI FTP G + T EVI V D Sbjct: 949 IASDVAATLRGDSVRLRQVLFNLLGNAIKFTPEGHVDVRVAAVAQTGELQTIEVI--VED 1006 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ K +PF Q +S R GTGLGL + + ++ G + S P +GT Sbjct: 1007 TGIGIPAELQAKLFEPFVQAESSTTRRFGGTGLGLTICRKLIQLMDGSLALDSEPGRGTR 1066 Query: 804 IEI 806 + + Sbjct: 1067 MTV 1069 >gi|163733036|ref|ZP_02140480.1| hybrid sensory histidine kinase, putative [Roseobacter litoralis Och 149] gi|161393571|gb|EDQ17896.1| hybrid sensory histidine kinase, putative [Roseobacter litoralis Och 149] Length = 752 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 85/268 (31%), Positives = 149/268 (55%), Gaps = 12/268 (4%) Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 +R+I ++ P SL + +I+ Q + +L A+ AE S KS FLA +SHEIRTP+ Sbjct: 173 IRMIDRRGPDGDIISLGI-NITAAVQYEEQLKAARASAEAASRAKSAFLANMSHEIRTPM 231 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 ++G ++V+ PL + + Y + I SG +L I+ND+LD SKIE+ K+ LH E Sbjct: 232 NGVVGMADVLTET---PLSEEQRL-YVDTIKNSGEALLVIINDVLDYSKIEAEKLQLHPE 287 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719 P +L++++ E + L+Q A +K IL+ ++ + + D ++QI N+L NA+ FT Sbjct: 288 PFNLEKSIHEVLRLLQSIARDKGILLCVDYSLLLTSDFIGDPGRLRQILTNLLGNAVKFT 347 Query: 720 PSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 + G + + + +E V +RV DTG+G+ ++ F Q+ + + + +GT Sbjct: 348 -TEGSVTVRVSGKPDEATGKVIVQVRVEDTGIGIPEDMIDHVFGEFNQVESERNRQFDGT 406 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GLGL + K ++ G+ ++ S G+ Sbjct: 407 GLGLAITKQLIKMMDGQIWLTSEEGVGS 434 >gi|50086083|ref|YP_047593.1| GacS-like sensor kinase protein [Acinetobacter sp. ADP1] gi|49532059|emb|CAG69771.1| GacS-like sensor kinase protein [Acinetobacter sp. ADP1] Length = 932 Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 90/283 (31%), Positives = 153/283 (54%), Gaps = 24/283 (8%) Query: 526 EKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLS----------- 572 + + + ST E +LL I ++K+L FS L + + +E ++ + + Sbjct: 218 QHMVINSTGELRLLQRDIANVVKRLHFSF---LELKEHTEQTEDDLRRTLDTLEVQNITY 274 Query: 573 -HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 A+ A + KS FLA +SHE+RTPL +I GF ++ Q+ L N + + Y I Sbjct: 275 RQARDQAISANQAKSVFLANISHELRTPLNSIDGFIHLMLRQQ--NLSNEQRL-YMQTIR 331 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 +S +L ++ND+LD SKI++GK+ L +L+EA+ + + ++ A +K I + + Sbjct: 332 KSSAHLLALINDVLDFSKIDAGKLELETAAFNLEEAIFDVMDMLSPLAAQKHIDMAFYYG 391 Query: 692 NNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVG 747 +NIP I + D VKQI N++SNAI FTP G I+ + H ++ +L V+D+G+G Sbjct: 392 DNIPEIVIGDALRVKQILTNLISNAIKFTPDGEIIVRVRMEHDDIDQCLLHFSVQDSGIG 451 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 ++ + +K + F Q S + GTGLGL ++K +V G Sbjct: 452 LSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVQLMHG 494 >gi|89893099|ref|YP_516586.1| hypothetical protein DSY0353 [Desulfitobacterium hafniense Y51] gi|89332547|dbj|BAE82142.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 585 Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 134/243 (55%), Gaps = 5/243 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KNQRFGPLGNPRYIEYAN 628 +L + +++S +K+DFLA VSHE+RTPLTAII F+E++ K +RF + + Sbjct: 337 QLEKVNTLLKEDSQYKADFLAMVSHELRTPLTAIIIFAEILLKKKRFEDSSEEQIL---C 393 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I + ++L ++N++LD++++E+G+ +L E V L + ++ +++ A I + Sbjct: 394 EIKENSEVLLHMINNILDLARLETGRNSLSIETVDLVDVINNVECVIRPLAQRNDIHLTA 453 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVG 747 +P I D V++I N+ NAI FTP GG++ I + + + + V+D G+G Sbjct: 454 RVERGVPLIQGDYEKVRRIIENLAGNAIKFTPLGGKVNIQASLAEDPHYVKITVQDDGIG 513 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 ++ + F Q+ +S + G+GLGL LAK + + + G + S KG+ ++ Sbjct: 514 ISKENQAHIFEKFIQVDSSSSRQYNGSGLGLALAKELTELHGGVISVESDLNKGSTFIVL 573 Query: 808 FPL 810 P+ Sbjct: 574 LPI 576 >gi|302877998|ref|YP_003846562.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302580787|gb|ADL54798.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 918 Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 78/239 (32%), Positives = 129/239 (53%), Gaps = 9/239 (3%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +++ AK AE + KS+FLA +SHEIRTP+ AIIGF+E+ + + + +Y Sbjct: 398 SEMFEAKTQAEAANKAKSEFLANMSHEIRTPMNAIIGFNELCLRTQL----SDKQKDYLT 453 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + +L I+N++LD+SKIE+G+ L P+ + V L+ + A +K + I Sbjct: 454 KAGSAAQSLLHIINEVLDLSKIEAGQHMLEAIPLKISRVVKNVTDLIGVLAVDKGLTIHV 513 Query: 689 SFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRD 743 +I + + D ++QI LN+ SNAI F+ G I S + V L+ V+D Sbjct: 514 DLDEHIEQYPLRGDPMRLQQILLNLCSNAIKFSTQGSISIRCQLGAISGQAVELKFAVQD 573 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+G++ +L KPF Q +S R GTGLGL + + +V+ G+ ++ S P G+ Sbjct: 574 SGIGISPAQLGLLFKPFSQADSSTTRRFGGTGLGLSICRGLVERMGGRIWVESEPGIGS 632 Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 13/162 (8%) Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 +Q +++E + DG +++ +G IL TN A + L GY E+++ + + S + H Sbjct: 143 LQYRAVIETSKDGFLVVDMQGRILETNDAYACLSGYSAEELVTMNIGDLEAKMSASDVAH 202 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKN 569 LT L+ E T T + + I + + C+S +HDIS+ KQ++ Sbjct: 203 VLTG-LAEQGHARFE--TQHKTWSGHIWPVEINVTYIAAEGGRCFSF-LHDISQRKQDEA 258 Query: 570 KLSHAKKIAEK-ESSHKSDFLA---RVSHEIRTPLTAIIGFS 607 +L +K+++ E S S+ + V + TAI G+S Sbjct: 259 QL---RKLSQAVEQSPNSNVICDTNGVIEYVNAAFTAITGYS 297 >gi|254446841|ref|ZP_05060316.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198256266|gb|EDY80575.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 614 Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 81/244 (33%), Positives = 126/244 (51%), Gaps = 7/244 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 KL + K A S KS+FLA +SHE RTPL I+G +++ ++ N + E Sbjct: 227 KLRKSSKQANAASEAKSEFLANMSHEFRTPLNGIMGMTQLAISKS----SNTQQKELLEV 282 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + +S + +L IVND+LD+SKIES ++ + EPVSL V QL A +K I T+ Sbjct: 283 VIQSADALLMIVNDILDLSKIESHRLTIESEPVSLHALVDSTTPFFQLVAKQKGIEFTTT 342 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVIL-RVRDTGV 746 + P I++D ++QI N+ NAI FT SG + I + + +L + DTG+ Sbjct: 343 VSPRCPELIVSDAVRLRQILFNLTGNAIKFTKSGSVTVSIEPIQLPDGKYLLFEIADTGI 402 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ + L + F Q S GTGLGL + + + G+ ++ S KG++ + Sbjct: 403 GIPDKLLNTIFEAFTQADTSSTRNFGGTGLGLTITRQLTHLLGGEVHVESVVEKGSVFSV 462 Query: 807 IFPL 810 PL Sbjct: 463 FIPL 466 >gi|53729018|ref|ZP_00134277.2| COG0642: Signal transduction histidine kinase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208411|ref|YP_001053636.1| aerobic respiration control sensor protein [Actinobacillus pleuropneumoniae L20] gi|190150262|ref|YP_001968787.1| aerobic respiration control sensor protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|126097203|gb|ABN74031.1| aerobic respiration control sensor protein [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189915393|gb|ACE61645.1| aerobic respiration control sensor protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 616 Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 122/225 (54%), Gaps = 5/225 (2%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 EK + KS +A +SHE+RTPL IIG S ++ G L + + EY I+ S + Sbjct: 109 EKNNRDKSVLMATISHELRTPLNGIIGLSRILLE---GELTDQQR-EYLKTINISAVSLG 164 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-I 697 I +D++D+ KI+S ++ L + + + +S+ + L A + +I +++++P I Sbjct: 165 HIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLPNFI 224 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + QI N++SNA+ FTP+GG I +S N+ +RDTG+G+ +E K Sbjct: 225 YVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLRDTGIGIPKHEQRKVF 284 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 F Q NSQ+ + +G+G+GL ++K + G + S KG+ Sbjct: 285 AMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDLTLRSEMGKGS 329 >gi|326571860|gb|EGE21865.1| two-component system sensor histidine kinase [Moraxella catarrhalis BC8] Length = 988 Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 87/263 (33%), Positives = 133/263 (50%), Gaps = 24/263 (9%) Query: 557 TMHDIS----EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 T HD+ E + + + +A+ A S KS FLA +SHE+RTPL +I GF ++ Sbjct: 289 TEHDLQQAFDEMEMQNISIRNARDAAISTSQAKSAFLANISHELRTPLNSIDGFINLLA- 347 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 R G L + + Y I +S +L +VND+LD SKIE+GK+ L L +AV + + Sbjct: 348 -RKGELTGEQNL-YVQTIKKSSAHLLALVNDVLDFSKIEAGKLILDSHDFDLYDAVYDVV 405 Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 ++ A EKR+ + F +++P RI+ D VKQI N++ NAI FT G ++ + Sbjct: 406 DMLSPAALEKRLRLAVLFYDDVPTRIIGDSLRVKQILTNLVGNAIKFTDMGSVVVRVSLA 465 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD----- 786 + + V DTG G++ + E+ + FGQ S R GTGLGL ++K + Sbjct: 466 EKTGYLCIEVEDTGKGISESDKEQLFQSFGQGDLSVTRRYGGTGLGLVISKQLTQLMGGS 525 Query: 787 -----------ANMGKFYIFSTP 798 AN G + F P Sbjct: 526 IGFIDNRSENIANAGATFWFEMP 548 >gi|307301290|ref|ZP_07581052.1| PAS/PAC sensor hybrid histidine kinase [Sinorhizobium meliloti BL225C] gi|307317961|ref|ZP_07597398.1| PAS/PAC sensor hybrid histidine kinase [Sinorhizobium meliloti AK83] gi|306896363|gb|EFN27112.1| PAS/PAC sensor hybrid histidine kinase [Sinorhizobium meliloti AK83] gi|306903746|gb|EFN34333.1| PAS/PAC sensor hybrid histidine kinase [Sinorhizobium meliloti BL225C] Length = 759 Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 135/256 (52%), Gaps = 14/256 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++E ++ A++ AE+ S KS LA VSHEIRTPL+ I+G S ++ R Sbjct: 218 RDVTEEMLAASQREEARRRAEEASRAKSRLLATVSHEIRTPLSGILGMSRLLAETRLSE- 276 Query: 619 GNPRYIEYANYI---DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 E NY+ +SG+ ++ +V DL+D S + G+ L L + V + ++ Sbjct: 277 ------EQKNYLAGMQQSGHTLVQLVEDLIDFSSLAVGRFQLRPSQEDLRQTVENVVEML 330 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A+EK I I + A +P R+L D ++Q+ N++ NA+ FT GG + + N Sbjct: 331 SPRAHEKNIEIGATVAIEVPERMLFDAARLRQVLFNVVGNAVKFTEKGG--VFVSVDIEN 388 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V +R+ D+G GM+ EL + + F Q + Q R +GTGLGL +++ +++A G Sbjct: 389 GSVRIRIDDSGPGMSADELARVFEEFEQAGDDAQ-RAKGTGLGLAISRRIMEAFGGSLTA 447 Query: 795 FSTPAKGTLIEIIFPL 810 S KG+ EI FP+ Sbjct: 448 TSMSGKGSRFEIRFPM 463 >gi|304399231|ref|ZP_07381098.1| multi-sensor hybrid histidine kinase [Pantoea sp. aB] gi|304353285|gb|EFM17665.1| multi-sensor hybrid histidine kinase [Pantoea sp. aB] Length = 909 Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 79/245 (32%), Positives = 137/245 (55%), Gaps = 16/245 (6%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL ++GF+ +++K Q +Y Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVLGFTRQMLKTQL-----RTTQRDYMQ 332 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS N +L I+ND+LD SK+E+GK+ L P L + E + L+ A++K + + Sbjct: 333 TIERSANNLLSIINDVLDFSKLEAGKLMLEAIPFPLRATLDETLVLLAPSAHDKGLELTV 392 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSG------GQIIISTTHTSNEEVILRV 741 +++P ++ D ++QI +N++ NAI FT G GQ +I+ + E+ ++V Sbjct: 393 VCDSSVPDNVIGDALRLQQILINLIGNAIKFTEKGYIGLRVGQRVITQSRV---ELEIQV 449 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G+G++ + + + F Q S R GTGLGL + + +V G+ S P +G Sbjct: 450 EDSGIGISEQQQTQMFQAFRQADASISRRHGGTGLGLVITQKLVREMGGEITFSSQPDQG 509 Query: 802 TLIEI 806 ++ I Sbjct: 510 SVFVI 514 >gi|260221595|emb|CBA30317.1| hypothetical protein Csp_C22940 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 956 Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 103/374 (27%), Positives = 183/374 (48%), Gaps = 29/374 (7%) Query: 444 KRKMEIEVMQLCSILEATSDGIAI-INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 K+K+ + + +I E + GI + +NR +++ NR + +LFGY ++L +P + Sbjct: 84 KQKLSLAHAEQRAIFEMATVGIVLMVNR--VVVQCNRNLEELFGYAPGELLGQPTRCWY- 140 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL----------LSLRIIIKKLPFSS 552 PS ++ E + D++ + L +T+ + + +S R+ ++ Sbjct: 141 ---PSEESY---EAMGRDVQALKDGGRLQNTEMQMVRKDGTMFWARVSARVFATPDHRNA 194 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 + + DI+ + + + HA + AE+ + KS FLA +SHEIRTP+ AI+G S +++ Sbjct: 195 VLGV-LEDITPSYEARQAIEHAHQQAEEANRAKSSFLANMSHEIRTPMNAIMGMSYLVQK 253 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 N R Y N I S +L I+ND+LD SKIE+GK+ + LD+ + Sbjct: 254 TEL----NERQRGYLNKIQSSSQHLLGIINDILDYSKIEAGKLGIEHIEFELDKVLDNLA 309 Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTT 730 LV A K + + +P +++ D + QI +N +NA+ FT G I + Sbjct: 310 GLVGDKAASKGLELVFDVDKQVPLQLVGDPLRLGQILVNYANNAVKFTERGEIDIRVRVQ 369 Query: 731 HTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 S V+L VRDTG+G++ + + F Q S + GTGLGL +++ + Sbjct: 370 EESTSHVVLHFAVRDTGIGISEEQKSVLFQSFQQADASTTRKFGGTGLGLAISRQLAQMM 429 Query: 789 MGKFYIFSTPAKGT 802 G+ + ST +G+ Sbjct: 430 EGEVGVDSTFGQGS 443 >gi|253567761|ref|ZP_04845172.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251841834|gb|EES69914.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1420 Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 74/253 (29%), Positives = 134/253 (52%), Gaps = 12/253 (4%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 ++K +L + ++ + K F ++HE RTP+T IIG E + NP+ IE Sbjct: 884 RQKAQLIRMSRKVQELTLDKISFFTNITHEFRTPITLIIGPIERALKLSY----NPQVIE 939 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 N+++R+ +L +VN L+D K+ESGK+ + + + + I+ +++A E+ I+ Sbjct: 940 QLNFVERNSKYLLSLVNQLMDFRKVESGKLEIVKTRGNFLKFIDSLITPFEVFAQERNIV 999 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-----IISTTHTSNEEVILR 740 ++ + +P IL D +++++ N+LSNAI FTP+GG + +S E + + Sbjct: 1000 LKRYYRMEMPEILYDEEAMRKVVTNLLSNAIKFTPNGGTVSLYLSALSAKDGEKETLYIC 1059 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQ--IRGE-GTGLGLPLAKAMVDANMGKFYIFST 797 V+D+G G+ +L + F Q N + + G+ GTG+GL L K +V + G+ F+ Sbjct: 1060 VKDSGSGIPEEDLNRIFNRFYQSQNQVKYPVYGQAGTGIGLYLCKRIVQMHGGEIKAFNN 1119 Query: 798 PAKGTLIEIIFPL 810 G I+ PL Sbjct: 1120 RHAGCSFRILLPL 1132 >gi|255692100|ref|ZP_05415775.1| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] gi|260622252|gb|EEX45123.1| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] Length = 624 Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 88/253 (34%), Positives = 134/253 (52%), Gaps = 15/253 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +DI+E K+ + L A+ AE KS FLA +SHEIRTPL AI+GFS ++ + Sbjct: 377 YDITELKKTEEMLVKARDKAEASDRLKSAFLANMSHEIRTPLNAIVGFSALLAATE--DM 434 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS--LVQ 676 Y + I + L+L+++ND+LD+SK+ESG + LH +L E + E+++ Q Sbjct: 435 AEKEL--YNSLISHNNELLLELINDVLDLSKLESGYLELHPSWFNLAELLDESVAEYTRQ 492 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 L A + +RT + + + D +KQI N LSNA+ T SG + +S Sbjct: 493 LAAG---VELRTHYLDQGFLVELDRLRIKQILNNFLSNALKNTTSGYVEVFYEIDSSY-- 547 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V + VRDTG G+ LEK + F ++ + Q G GLGLP+ K++VD G+ + S Sbjct: 548 VRIGVRDTGRGIPQNMLEKIFERFEKVDSFTQ----GAGLGLPICKSIVDKMNGRIWADS 603 Query: 797 TPAKGTLIEIIFP 809 GT + P Sbjct: 604 QLGIGTTFMVELP 616 >gi|168237284|ref|ZP_02662342.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734600|ref|YP_002115343.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194710102|gb|ACF89323.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289636|gb|EDY28999.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 948 Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 83/261 (31%), Positives = 132/261 (50%), Gaps = 7/261 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 442 VLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 500 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 501 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 557 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + N+P L D ++Q+ N+LSNAI FT G I+ + Sbjct: 558 PLVVRKQLGLYCFIEPNVPVSLNGDPMRLQQVISNLLSNAIKFTDIG--CIVLHVRCDGD 615 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 616 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 675 Query: 796 STPAKGTLIEIIFPLYDTSHP 816 S P G+ + PLY +P Sbjct: 676 SEPGMGSQFTLRIPLYGAQYP 696 >gi|56695057|ref|YP_165404.1| sensor histidine kinase/response regulator [Ruegeria pomeroyi DSS-3] gi|56676794|gb|AAV93460.1| sensor histidine kinase/response regulator [Ruegeria pomeroyi DSS-3] Length = 739 Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 127/240 (52%), Gaps = 13/240 (5%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTP+ ++G +E++ + + YA+ I SG +L I+ND+ Sbjct: 216 KSAFLANMSHEIRTPMNGVVGMAELLCDTAL----DEEQQLYASTIKNSGEALLVIINDV 271 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRS 703 LD SKIE+ KM LH EP L+ + E L+Q +K + + + +P + + D Sbjct: 272 LDYSKIEAEKMMLHPEPFDLERCIHEVAMLMQPIVRDKGLTLLVDYDLFLPTLFVGDPGR 331 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTT-----HTSNEEVILRVRDTGVGMTNYELEKAMK 758 V+Q+ N+L NA+ FT + G I+I T T + + + DTG+G+ +L Sbjct: 332 VRQVLTNLLGNAVKFT-TKGHILIRVTGVPDPATGRCAIHVAIEDTGIGIPREKLAHIFG 390 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSHP 816 F Q+ N + + +GTGLGL +++ ++ G ++ S +G+ + P+ + + P Sbjct: 391 EFNQVENERNRQFDGTGLGLAISQRLIQMMGGTVWVESEEGRGSCFGFRVTLPMSEEAQP 450 >gi|296112383|ref|YP_003626321.1| two-component system sensor histidine kinase [Moraxella catarrhalis RH4] gi|295920077|gb|ADG60428.1| two-component system sensor histidine kinase [Moraxella catarrhalis RH4] Length = 988 Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 87/263 (33%), Positives = 133/263 (50%), Gaps = 24/263 (9%) Query: 557 TMHDIS----EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 T HD+ E + + + +A+ A S KS FLA +SHE+RTPL +I GF ++ Sbjct: 289 TEHDLQQAFDEMEMQNISIRNARDAAISTSQAKSAFLANISHELRTPLNSIDGFINLLA- 347 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 R G L + + Y I +S +L +VND+LD SKIE+GK+ L L +AV + + Sbjct: 348 -RKGELTGEQNL-YVQTIKKSSAHLLALVNDVLDFSKIEAGKLILDSHDFDLYDAVYDVV 405 Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 ++ A EKR+ + F +++P RI+ D VKQI N++ NAI FT G ++ + Sbjct: 406 DMLSPAALEKRLRLAVLFYDDVPTRIIGDSLRVKQILTNLVGNAIKFTDMGSVVVRVSLA 465 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD----- 786 + + V DTG G++ + E+ + FGQ S R GTGLGL ++K + Sbjct: 466 EKTGYLCIEVEDTGKGISESDKEQLFQSFGQGDLSVTRRYGGTGLGLVISKQLTQLMGGS 525 Query: 787 -----------ANMGKFYIFSTP 798 AN G + F P Sbjct: 526 IGFIDNRSENIANAGATFWFEMP 548 >gi|158338408|ref|YP_001519585.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158308649|gb|ABW30266.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] Length = 1076 Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 82/268 (30%), Positives = 141/268 (52%), Gaps = 25/268 (9%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK A+ S KS+FLA +SHE+RTP+ A+IG + ++ + + + ++ + Sbjct: 536 ELQTAKDRADAASQVKSEFLANMSHELRTPMNAVIGMTGLLTHTSL----DAQQQDFVDT 591 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG+ +L ++ND+LD SKIE+GK+ + +P +L + EA+ LV A +K + I Sbjct: 592 IRSSGDALLCLINDILDFSKIEAGKLEVEEQPFNLKSCIEEALKLVAPRAFKKGLEIAYL 651 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII--------ISTTHTSNEE---- 736 ++P I+ D+ ++Q+ +N+L+N + FT +G I+ I S E Sbjct: 652 ADPDLPCGIVGDVTRLRQVLVNLLTNGVKFTDNGEVIVYVKEVTAEIQDREGSGSEGQSP 711 Query: 737 ---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 V+DTG+G+ L + + F Q+ +S + GTGLGL ++K + + GK + Sbjct: 712 RRLFQFAVKDTGIGIPEDRLNRLFQSFSQVDSSTTRKYGGTGLGLAISKRLCELMGGKIW 771 Query: 794 IFSTPAKGT--LIEIIFPLYDTSHPHDC 819 + S G+ I P+ DT DC Sbjct: 772 VDSEIGIGSTFTFTIAAPIADT---FDC 796 >gi|29654391|ref|NP_820083.1| hypothetical protein CBU_1084 [Coxiella burnetii RSA 493] gi|29541658|gb|AAO90597.1| two component system histidine kinase [Coxiella burnetii RSA 493] Length = 683 Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 81/245 (33%), Positives = 139/245 (56%), Gaps = 8/245 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK+ AE+ + KSDFLA +SHE+RTPL AI+G S+++K + + Sbjct: 291 ELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTHNLSDEQQGQ----IDV 346 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I ++G +L ++NDLLD +K+E+GK++ E + L E V + + L A++K I ++ Sbjct: 347 ISQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAHKKGIQLKFD 406 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEEVIL--RVRDTG 745 + NIP +++ D + ++Q+ +N+LSNA+ FT G Q+ + ++++ L V+DTG Sbjct: 407 YPENIPSKVMGDAKRIRQVLVNLLSNALKFTEKGYVQLTANCLKKDHKKMTLCFTVKDTG 466 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +GM +L F QI + Q + +G GLGL + K +++ G + S P G+ Sbjct: 467 IGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTSEPGVGSEFT 526 Query: 806 IIFPL 810 I P Sbjct: 527 CIIPF 531 >gi|307245847|ref|ZP_07527932.1| hypothetical protein appser1_10490 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254820|ref|ZP_07536646.1| hypothetical protein appser9_10580 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259262|ref|ZP_07540991.1| hypothetical protein appser11_10590 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307263601|ref|ZP_07545215.1| hypothetical protein appser13_10180 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306853207|gb|EFM85427.1| hypothetical protein appser1_10490 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862191|gb|EFM94159.1| hypothetical protein appser9_10580 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866629|gb|EFM98488.1| hypothetical protein appser11_10590 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306871064|gb|EFN02794.1| hypothetical protein appser13_10180 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 586 Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 122/225 (54%), Gaps = 5/225 (2%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 EK + KS +A +SHE+RTPL IIG S ++ G L + + EY I+ S + Sbjct: 79 EKNNRDKSVLMATISHELRTPLNGIIGLSRILLE---GELTDQQR-EYLKTINISAVSLG 134 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-I 697 I +D++D+ KI+S ++ L + + + +S+ + L A + +I +++++P I Sbjct: 135 HIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLPNFI 194 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + QI N++SNA+ FTP+GG I +S N+ +RDTG+G+ +E K Sbjct: 195 YVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLRDTGIGIPKHEQRKVF 254 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 F Q NSQ+ + +G+G+GL ++K + G + S KG+ Sbjct: 255 AMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDLTLRSEMGKGS 299 >gi|206580641|ref|YP_002238911.1| sensory box histidine kinase/response regulator [Klebsiella pneumoniae 342] gi|206569699|gb|ACI11475.1| sensory box histidine kinase/response regulator [Klebsiella pneumoniae 342] Length = 897 Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 81/255 (31%), Positives = 128/255 (50%), Gaps = 5/255 (1%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI+ K + A K A + + KS FLA +SHEIRTP+ I+G +++ + Sbjct: 240 TLQDITRRKAAELLAIEAAKEAREANEAKSAFLANMSHEIRTPMNGILGMTQLCLDT--- 296 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + EY + + S +L I+ND+LD S+IESGKM + EP+ + + I Sbjct: 297 PLTAEQR-EYLSLVMSSAQSLLHIINDILDFSRIESGKMQVDEEPLEIRPFIQSLIRPHM 355 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A+EK I + + +P +L D ++QI N+L NA+ FT G ++ Sbjct: 356 PAASEKGIELLVDISPAVPEVLIVDGPRLRQILTNLLGNALKFTHQGEVLLAIAPADDES 415 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 R+RDTG+G+ + + + F Q +S R GTGLGL ++ +V G+ + Sbjct: 416 RWRFRIRDTGIGIAPEKQKAIFEAFSQADSSTTRRYGGTGLGLTISARLVSLMGGELMVE 475 Query: 796 STPAKGTLIEIIFPL 810 S P G+ PL Sbjct: 476 SQPGAGSEFAFTLPL 490 >gi|164685702|ref|ZP_01946761.2| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain/response regulator receiver domain protein [Coxiella burnetii 'MSU Goat Q177'] gi|164601209|gb|EAX32628.2| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain/response regulator receiver domain protein [Coxiella burnetii 'MSU Goat Q177'] Length = 669 Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 143/255 (56%), Gaps = 8/255 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++ + +L AK+ AE+ + KSDFLA +SHE+RTPL AI+G S+++K Sbjct: 267 DVTNDALREKELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTHNLSDEQ 326 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + I ++G +L ++NDLLD +K+E+GK++ E + L E V + + L A Sbjct: 327 QGQ----IDVISQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLA 382 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEEV 737 ++K I ++ + NIP +++ D + ++Q+ +N+LSNA+ FT G Q+ + ++++ Sbjct: 383 HKKGIQLKFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEKGYVQLTANCLKKDHKKM 442 Query: 738 IL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 L V+DTG+GM +L F QI + Q + +G GLGL + K +++ G + Sbjct: 443 TLCFTVKDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVT 502 Query: 796 STPAKGTLIEIIFPL 810 S P G+ I P Sbjct: 503 SEPGVGSEFTCIIPF 517 >gi|148975720|ref|ZP_01812551.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3] gi|145964793|gb|EDK30045.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3] Length = 856 Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 82/265 (30%), Positives = 140/265 (52%), Gaps = 13/265 (4%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI++ + + + A++ AE ++ ++DFLA++SHEIRTPL I+G S+++K + Sbjct: 453 QDITKLVEAERQADRAREEAEHLANVRADFLAKMSHEIRTPLNGILGVSQLLKR----SV 508 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + E + + S +L ++ND+LD SKIE G+ N+ + L E ++ S+ + Sbjct: 509 HSEDNREQVDVLCNSAEHLLAVLNDILDFSKIEQGQFNIQKKDFRLGELINTLDSIYRPL 568 Query: 679 ANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIII----STTH 731 +K + S N++ I D + QI N+LSNA+ FT GG + S + Sbjct: 569 CEDKSVTF--SIVNHLVDDIEINTDQVRLNQIMFNLLSNALKFTHQGGISVSFELESIFN 626 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 T+ +I+RV+DTG+G+ +++ +PF Q + GTGLGL + K +VD G Sbjct: 627 TNKASLIVRVKDTGIGIDGSKIDAVFEPFVQAEETTTREYGGTGLGLTIVKNLVDMLEGD 686 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHP 816 + S A+G+ I P+ S P Sbjct: 687 IQVRSAKAQGSEFIIEIPVELNSKP 711 >gi|325273993|ref|ZP_08140152.1| multi-sensor signal transduction histidine kinase [Pseudomonas sp. TJI-51] gi|324100882|gb|EGB98569.1| multi-sensor signal transduction histidine kinase [Pseudomonas sp. TJI-51] Length = 593 Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 99/368 (26%), Positives = 171/368 (46%), Gaps = 41/368 (11%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-------PVEDILRKPFTVFLEQNT 505 +L ++L++ DG+ II+R+G + N + G+ + + L++P LEQ Sbjct: 257 RLQAVLDSIDDGLLIIDRQGRLEHLNPVAQRQLGWNDSRVGSSLAEALQRPE---LEQQL 313 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISE 563 V+ SLD + + + + +E +LL+ + P M HD++E Sbjct: 314 RQVLRGG-----SLD--RPPDDLNMEVDEESRLLTYSLTPVSHPQGPILGAVMVLHDVTE 366 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI-IGFSEVIKNQRFGPLGNPR 622 + + +S+F+ R SHE+RTP+T + + F + + +F P R Sbjct: 367 QRAFERV--------------RSEFVLRASHELRTPVTGMHMAFGLLRERVKFPP--EAR 410 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + I + ++NDLL+ S+ +SG L P ++DE V A V A K Sbjct: 411 ENDLLETIGEEMQRLTQLINDLLNFSRYQSGLQKLELAPCAIDELVERAQLRVADQAAHK 470 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 +I + + +PRI AD + ++ N+L NAI TP GG+I + + E VI+ V Sbjct: 471 QIELVSDLEQPLPRIQADPAQLDRVLDNLLHNAIRHTPKGGRIRLHARRHA-ERVIISVE 529 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D G G+ + + +PF Q+ + G GLGL L K +V + G+ +FS P +GT Sbjct: 530 DNGEGIAYGQQGRIFEPFVQVGRKK----GGAGLGLALCKEIVQLHGGRMGVFSRPGQGT 585 Query: 803 LIEIIFPL 810 + P+ Sbjct: 586 QFYMALPV 593 >gi|161830656|ref|YP_001596642.1| PAS/histidine kinase/ATPase domain-containing protein [Coxiella burnetii RSA 331] gi|161762523|gb|ABX78165.1| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain/response regulator receiver domain protein [Coxiella burnetii RSA 331] Length = 669 Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 143/255 (56%), Gaps = 8/255 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++ + +L AK+ AE+ + KSDFLA +SHE+RTPL AI+G S+++K Sbjct: 267 DVTNDALREKELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTHNLSDEQ 326 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + I ++G +L ++NDLLD +K+E+GK++ E + L E V + + L A Sbjct: 327 QGQ----IDVISQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLA 382 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEEV 737 ++K I ++ + NIP +++ D + ++Q+ +N+LSNA+ FT G Q+ + ++++ Sbjct: 383 HKKGIQLKFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEKGYVQLTANCLKKDHKKM 442 Query: 738 IL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 L V+DTG+GM +L F QI + Q + +G GLGL + K +++ G + Sbjct: 443 TLCFTVKDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVT 502 Query: 796 STPAKGTLIEIIFPL 810 S P G+ I P Sbjct: 503 SEPGVGSEFTCIIPF 517 >gi|186685940|ref|YP_001869136.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186468392|gb|ACC84193.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1575 Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 84/262 (32%), Positives = 139/262 (53%), Gaps = 34/262 (12%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK+ AE + KS FLA +SHE+RTPL AI+GF++++ +R L N R + I Sbjct: 1076 LRIAKETAETANRSKSAFLANMSHELRTPLNAILGFAQLM--ERDTTL-NKRQRDSLATI 1132 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 +RSG +L+++ND+L++SKIE+G++ L+ L + E + Q+ A +K++ + Sbjct: 1133 NRSGEHLLNLINDVLEMSKIEAGRIVLNPTSFDLHRLLQEMQQMFQVRAKDKKLSLSFEL 1192 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----HTSNEEVIL------ 739 A N+ + IL D ++Q+ +N+L NAI FT +GG + + S EV L Sbjct: 1193 APNLHQYILTDESKLRQVLINLLGNAIKFTNTGGVTLRVSLGIGEQGSRGEVALSLSPLP 1252 Query: 740 -------------------RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 ++ DTG+G+ EL+ +PF Q +++Q+ EGTGLGL + Sbjct: 1253 LCPSAPLPLVPNSQSLISFKIEDTGLGIPTEELDNLFQPFVQTASARQVM-EGTGLGLTI 1311 Query: 781 AKAMVDANMGKFYIFSTPAKGT 802 ++ V G + S G+ Sbjct: 1312 SRQFVQLMGGDIRVHSVVGSGS 1333 >gi|288959296|ref|YP_003449637.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288911604|dbj|BAI73093.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 919 Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 86/271 (31%), Positives = 140/271 (51%), Gaps = 16/271 (5%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D++E K+ + +LS A+ AE + KS+FLA +SHEIRTPL +IGF++++ Sbjct: 350 VVRDVTERKRYEGELSAARAEAEAATRVKSEFLASMSHEIRTPLNGVIGFADLLLATEL- 408 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P +Y +G +L I+ D+LD SKIE+GK+ L L + + L+ Sbjct: 409 ---TPEQRQYVALQREAGRGLLAIIGDILDYSKIEAGKLELEERAFDLHRLLRDCRDLMS 465 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A++K +L++ S A ++PR + D ++QI LN++ NA+ FT G +++S + Sbjct: 466 NAASQKGLLLQLSLAGSVPRFVHGDEARIRQILLNLVGNAVKFTER-GSVLVSVGLLTGP 524 Query: 736 E--------VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 V+LR V DTG G+ + + F Q S R GTGLGL ++K +V Sbjct: 525 GEGGGEGAPVLLRFSVSDTGPGIPPADQANLFQRFSQGDRSTTRRYGGTGLGLIISKQLV 584 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + G + S+P G+ PL + P Sbjct: 585 ELMRGHIGVQSSPGVGSTFWFELPLPVAASP 615 >gi|254444998|ref|ZP_05058474.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198259306|gb|EDY83614.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 637 Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 83/264 (31%), Positives = 144/264 (54%), Gaps = 23/264 (8%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQRF 615 ++E ++ ++ L AK+ AE S K DFL+ +SHE+RTPL IIG+ E++ + + Sbjct: 238 MAEIEKREDALVLAKETAEASSRAKDDFLSVISHELRTPLNPIIGYVEILLRKTAEAEDR 297 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 LG + +YA ++ D+++ ++D S+ E G +NL EPV I+L+ Sbjct: 298 KQLGLVK--QYATHLQ-------DLIDHVIDYSRFERGIVNLTLEPVDYQRLCQNVINLL 348 Query: 676 QLYANEKRILI--RTSFANNIPR----ILADLRSVKQIALNILSNAIHFTPSGG-QIIIS 728 + A K + + + F N+ + + AD ++Q+ LN+++NA+ FT SG +I+ Sbjct: 349 ERQAKSKGVTMTCQHQFGNDAFKEKNTLSADRVKLQQVVLNLVANAVKFTESGSIKILTF 408 Query: 729 TTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 T++ + +LR V+DTG+G++ + EK KPF QI S + G GLGL + K +V+ Sbjct: 409 IDKTADHDALLRIEVQDTGIGISEEDREKVFKPFSQIDVSLTRQYSGLGLGLAITKKIVE 468 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPL 810 A G+ S G++ I P+ Sbjct: 469 AMNGQIGFNSDKGVGSVFWIEVPV 492 >gi|312960110|ref|ZP_07774622.1| two-component system, NarL family, sensor histidine kinase EvgS [Pseudomonas fluorescens WH6] gi|311285604|gb|EFQ64173.1| two-component system, NarL family, sensor histidine kinase EvgS [Pseudomonas fluorescens WH6] Length = 1202 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 95/369 (25%), Positives = 188/369 (50%), Gaps = 12/369 (3%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +R + ++ + +++ T I + +R+G +++ N A +FG+ +ED++ K Sbjct: 571 ERALSDQMRFMGVLIDGTPHPIYVRDRQGRLMACNNAYLDVFGFKLEDVIGKTVVETDTG 630 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 N P + + + L L + Q +I K L I LP+ + I+ Sbjct: 631 NLPQAQSFH-ADYLRL-MEQGEPQIHDRVLKVPNGDVLTIYQWMLPYRDGDEKVVGMIAG 688 Query: 564 WK--QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPLGN 620 W E+ +L + A++E+ + +SHEIRTP+ A+IG E+ +KN G + Sbjct: 689 WVDVSERQRLLRQVQEAKEEADAANRAKTTMSHEIRTPMNAVIGMIELALKNAEQGR-AD 747 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 +E A+ RS +L+++ D+LDI++IESG ++L P + E ++ + + A Sbjct: 748 LDALEVASVASRS---MLELIGDILDIARIESGHLSLTLAPANPHELLASVARVFEGLAR 804 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 +K +++ + I +L D KQ+ N+L NAI FT +G + ++ ++ ++ L Sbjct: 805 DKGLVLHVELSPAIDCAVLIDPLRFKQVVSNVLGNAIKFTQAGQVRLGASGALADGQLHL 864 Query: 740 R--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 R V D+G+G++ + ++ PF Q N +Q G+GLGL +++++ + G+ ++ S Sbjct: 865 RLWVEDSGIGISAEDQQRLFNPFIQGSNHEQSARSGSGLGLVISRSLCEMMGGQLHLSSM 924 Query: 798 PAKGTLIEI 806 KGT +++ Sbjct: 925 LGKGTRVDV 933 >gi|238757840|ref|ZP_04619022.1| hypothetical protein yaldo0001_20250 [Yersinia aldovae ATCC 35236] gi|238703825|gb|EEP96360.1| hypothetical protein yaldo0001_20250 [Yersinia aldovae ATCC 35236] Length = 909 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 132/246 (53%), Gaps = 11/246 (4%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + +L+ AK+ AE+ + KS L +SHE+RTPL+ ++G E+++ P+ + + Sbjct: 370 ERTRELTLAKQQAEQANKRKSSHLTTISHELRTPLSGVLGALELLQ---MTPMSDKQS-R 425 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 AN + +L I+N+LLD S+IESG+++LH E L + +A+ +Q K + Sbjct: 426 LANTASQCTLSLLGIINNLLDFSRIESGQLSLHVEETPLLPLLDQAMHTIQGLGQTKGLA 485 Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 ++T + +P L D ++QI +N+L NA+ FT +GG I T N+ +I V D+ Sbjct: 486 LKTFVGHKVPLHLEVDGMRLRQILVNLLGNALKFTENGG--ICLTVKRCNDRLIFAVSDS 543 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G G++ + + +PF Q Q +GTGLGL +A + G + S+ GT I Sbjct: 544 GHGISLADQKAVFEPFFQ----SQGHIQGTGLGLTIASNLAKMMGGWLELHSSSGLGTCI 599 Query: 805 EIIFPL 810 + PL Sbjct: 600 SFLLPL 605 >gi|228960857|ref|ZP_04122490.1| hypothetical protein bthur0005_43120 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229147148|ref|ZP_04275506.1| hypothetical protein bcere0012_42840 [Bacillus cereus BDRD-ST24] gi|228636258|gb|EEK92730.1| hypothetical protein bcere0012_42840 [Bacillus cereus BDRD-ST24] gi|228798753|gb|EEM45733.1| hypothetical protein bthur0005_43120 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 545 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 101/376 (26%), Positives = 182/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ +L++ Sbjct: 198 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEE--------YLDRLYYE 249 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 +H TEI+ L +E+I + K K + L + I++ F Sbjct: 250 SFHH--TEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 302 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 303 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 346 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + + + Sbjct: 347 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHM 405 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+GG + + Sbjct: 406 VLDNKAGEKEISLQVNVLKR-ASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDK 464 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 465 YNAYI-KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTIT 523 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 524 VDSEVGEGTTFTVVLP 539 >gi|329132024|gb|AEB77973.1| GacS [Pseudomonas sp. K94.41] gi|329132030|gb|AEB77976.1| GacS [Pseudomonas protegens] gi|329132042|gb|AEB77982.1| GacS [Pseudomonas sp. S8-62] Length = 203 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 124/205 (60%), Gaps = 8/205 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y I++S + +L I+N++ Sbjct: 3 KSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQLDYLGTIEKSADSLLGIINEI 58 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRTSFANNIPRILADLRS 703 LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ + + ++ D Sbjct: 59 LDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLSLVGDPLR 118 Query: 704 VKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 +KQI N++SNAI FT G + ++ H + ++ + ++DTG+G++N ++ + F Sbjct: 119 LKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISIQDTGIGLSNQDVRALFQAF 178 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMV 785 Q NS + GTGLGL ++K ++ Sbjct: 179 SQADNSLSRQPGGTGLGLVISKRLI 203 >gi|330814970|ref|YP_004358675.1| Hpt sensor hybrid histidine kinase [Burkholderia gladioli BSR3] gi|327367363|gb|AEA58719.1| Hpt sensor hybrid histidine kinase [Burkholderia gladioli BSR3] Length = 1125 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 84/257 (32%), Positives = 134/257 (52%), Gaps = 11/257 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++ + +++L HAK A++ ++ KS FLA +SHEIRTPL AI+G E++ + PL Sbjct: 494 DMTASQALQHQLRHAKLAADQANAAKSAFLAAMSHEIRTPLNAILGNLELLGHSALNPLQ 553 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + I S N +L I+ D+LD SKIE+G+M L L + ++ ++++ A Sbjct: 554 RDRL----DTIRASSNGLLAIIQDVLDFSKIEAGEMRLEHMHFRLVDTITRSLAMFAPAA 609 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-----HTS 733 + KRI + F I + + D + Q+ N+LSNAI FT G++ +S Sbjct: 610 HLKRIALVGQFRAAIDQPMRGDPGRLAQVVNNLLSNAIKFTGQ-GRVTLSLDVERLPCAR 668 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +++ V DTG+G+ L F Q +S R GTGLGL L + +V G Sbjct: 669 GGMLVIEVADTGIGIEAAHLSTLFNAFMQADSSISRRFGGTGLGLALCQRLVTQMGGTID 728 Query: 794 IFSTPAKGTLIEIIFPL 810 + S P +G+ + PL Sbjct: 729 VQSEPGQGSRFTVRMPL 745 >gi|186685125|ref|YP_001868321.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186467577|gb|ACC83378.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1870 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 87/273 (31%), Positives = 137/273 (50%), Gaps = 40/273 (14%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q + L AK+ AE + KS FLA +SHE+RTPL AI+GFS+++ +R L N E Sbjct: 1351 QAEEALRIAKEAAETANQAKSAFLANMSHELRTPLNAILGFSQLM--ERDTSL-NSNQRE 1407 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I+RSG +L+++ND+L++SKIE+G++ E L + + Q+ A K++ Sbjct: 1408 SLATINRSGEHLLNLINDVLEMSKIEAGQIIFTPEDFDLYLLLQTLQEMFQVKAQTKQLF 1467 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-------ISTTHTSNEEV 737 ++ A N+PR I D ++Q+ +N+L NA+ FT +GG + T EE+ Sbjct: 1468 LKFEIAPNLPRYIQTDEGKLRQVLINLLGNAVKFTQTGGVTLRVRLGSEQGAGETGEEEL 1527 Query: 738 I----------------------------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 + V DTG G+ E+ +PF Q + Q Sbjct: 1528 LSPAQCPMPNAPCPIPNPQSPIPNARFLHFEVEDTGRGIAPEEMNNLFQPFVQTTSGIQT 1587 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + EGTGLGL +++ V G Y+ STP +G+ Sbjct: 1588 K-EGTGLGLTISRQFVRLLGGDIYLTSTPRQGS 1619 >gi|290509876|ref|ZP_06549247.1| sensory box histidine kinase/response regulator [Klebsiella sp. 1_1_55] gi|289779270|gb|EFD87267.1| sensory box histidine kinase/response regulator [Klebsiella sp. 1_1_55] Length = 897 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 81/255 (31%), Positives = 128/255 (50%), Gaps = 5/255 (1%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI+ K + A K A + + KS FLA +SHEIRTP+ I+G +++ + Sbjct: 240 TLQDITRRKAAELLAIEAAKEAREANEAKSAFLANMSHEIRTPMNGILGMTQLCLDT--- 296 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + EY + + S +L I+ND+LD S+IESGKM + EP+ + + I Sbjct: 297 PLTAEQR-EYLSLVMSSAQSLLHIINDILDFSRIESGKMQVDEEPLEIRPFIQSLIRPHM 355 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A+EK I + + +P +L D ++QI N+L NA+ FT G ++ Sbjct: 356 PAASEKGIELLVDISPAVPEVLIVDGPRLRQILTNLLGNALKFTHQGEVLLAIAPADDES 415 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 R+RDTG+G+ + + + F Q +S R GTGLGL ++ +V G+ + Sbjct: 416 RWRFRIRDTGIGIAPEKQKAIFEAFSQADSSTTRRYGGTGLGLTISARLVSLMGGELMVE 475 Query: 796 STPAKGTLIEIIFPL 810 S P G+ PL Sbjct: 476 SQPGAGSEFAFTLPL 490 >gi|268315760|ref|YP_003289479.1| PAS/PAC sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] gi|262333294|gb|ACY47091.1| PAS/PAC sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] Length = 691 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 93/326 (28%), Positives = 163/326 (50%), Gaps = 16/326 (4%) Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITL---GSTKEEKLLSLRII 544 E+++ K FL + YL E+ RQ +E+ + G+ ++ +++S + Sbjct: 355 EELIGKSIYQFLRTEKADAIRRYL-EMAVQQGRQLPPMEQQMVRADGAVRDVEIVSALVQ 413 Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 + P + + + DI+E KQ + L AK+ AE+ + KS L+ +SHEIRTPL +I Sbjct: 414 YQGRP---AFQVVLRDITERKQYERHLLEAKERAEEIARLKSTLLSNISHEIRTPLAGVI 470 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 GF+EV++ + L P + E A I SG +L+ +N LLD+++IE+G L EP Sbjct: 471 GFAEVLEEE----LDEP-HRELAALIRDSGRRLLETLNTLLDLARIEAGAFVLTPEPFDA 525 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 + V +++ + Q ++K + + + + D +I +N++SNA+ FT G Sbjct: 526 ADEVRQSVRIFQRMIDDKGLRLELDLPDAPLPVYLDRNGFHRIVVNLVSNAVKFTDEG-- 583 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 +I + + L+V+DTGVG+ + + F Q N G+GLGL + + Sbjct: 584 MIRVGLAAEGDWLRLQVQDTGVGIDPAFMPHLFEEFRQENNGLARTHPGSGLGLAITHRL 643 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810 V+ G+ + S KGT + PL Sbjct: 644 VEMMGGRIEVQSEKGKGTTFTVWLPL 669 >gi|229916393|ref|YP_002885039.1| PAS/PAC sensor signal transduction histidine kinase [Exiguobacterium sp. AT1b] gi|229467822|gb|ACQ69594.1| PAS/PAC sensor signal transduction histidine kinase [Exiguobacterium sp. AT1b] Length = 575 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 99/368 (26%), Positives = 179/368 (48%), Gaps = 35/368 (9%) Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS- 507 ++ +L S++E G+ +++ GI+ NR+ ++F Y +D+ F PS Sbjct: 234 VQRARLESLIEYMGAGLLLVDERGIVTLVNRSYREMFQY--DDL---SIGQFYHGILPSP 288 Query: 508 -----VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562 + + YLTE + RQ I G ++ ++S I +L +DI+ Sbjct: 289 EVETLIEDVYLTE--EVHRRQL--SIRTGFNQKTYMVSAAPIFSDTGMLRGTTLLFNDIT 344 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E K +L +K DF+A VSHE++TPLT+I GFSE + + G P Sbjct: 345 ELK----RLEKMRK----------DFVANVSHELKTPLTSIRGFSETLLD---GAKEVPE 387 Query: 623 YI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 ++ + I + + +V DLL++S++E + V L++ V E L+ A++ Sbjct: 388 LRDQFLDIIQKEATRMQMLVEDLLELSRLERDDFQMELVSVDLNQLVDEVCLLLSQKASK 447 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 K I + + + ADL +KQ+ +N+++NAI+++P G ++ I+ + LRV Sbjct: 448 KSIQLEAKHEGTVV-LQADLNRMKQVIMNLVANAINYSPEGSRVEIAV-EAKADSYKLRV 505 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +D G+G+ E+ + + F ++ ++ GTGLGL + K ++D + + S KG Sbjct: 506 KDNGIGIAEKEVSRIFERFYRVDKARSRNSGGTGLGLAIVKHIIDLHHATIDVESEEGKG 565 Query: 802 TLIEIIFP 809 T I FP Sbjct: 566 TTFTITFP 573 >gi|71905650|ref|YP_283237.1| PAS [Dechloromonas aromatica RCB] gi|71845271|gb|AAZ44767.1| PAS protein [Dechloromonas aromatica RCB] Length = 1439 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 81/248 (32%), Positives = 130/248 (52%), Gaps = 10/248 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ K+ + + A+ AE ++ K+DFLA +SHEIRTP+ AIIG + + Sbjct: 689 DITALKEAEREADRARATAESAAAAKADFLANMSHEIRTPMNAIIGMTHLALQTEL---- 744 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N R Y +D + +L I+ND+LD+SKIE+G M+ P SLD ++ + L A Sbjct: 745 NSRQKNYLTKVDNAAKGLLGIINDILDLSKIEAGMMHFEHAPFSLDASLERLSDMCSLKA 804 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 E+ + + A +P +++ D + Q+ LN++ NAI FT + G+I ++ +N E Sbjct: 805 RERGLELLYDIAPEVPDQLIGDSLRLGQVLLNLVGNAIKFTEA-GEITVTVKLLANRENE 863 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + V DTG+GM + + F Q S + GTGLGL + K +V+ G + Sbjct: 864 VDLGFEVIDTGIGMNVEQQSQLFSAFTQADTSTTRKYGGTGLGLSICKRIVELQGGSIGV 923 Query: 795 FSTPAKGT 802 S P G+ Sbjct: 924 SSQPGIGS 931 >gi|303327059|ref|ZP_07357501.1| probable hybrid sensory kinase [Desulfovibrio sp. 3_1_syn3] gi|302863047|gb|EFL85979.1| probable hybrid sensory kinase [Desulfovibrio sp. 3_1_syn3] Length = 981 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 85/267 (31%), Positives = 139/267 (52%), Gaps = 17/267 (6%) Query: 556 LTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 L D++E + +++ L A + A + + KS+FL+ +SH+IRTP+ IIG +E+ Sbjct: 438 LIAKDVTELRLKESLYIQALKDASESANQANKSKSEFLSSMSHDIRTPMNGIIGMTEI-- 495 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 R + + + I S NL+LD++N++LD+SKIESG++ L+ ++ E V Sbjct: 496 -ARVNIQDTAKVQDCLHKITMSSNLLLDLINEVLDMSKIESGRLALNEREFNIAELVETL 554 Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + VQ EK + + + + D ++QI +N++SNAI +TP GG I S + Sbjct: 555 FTAVQPLLKEKNHTLNVHINDVVHEDFIGDPLRLQQIFINLMSNAIKYTPEGGNIDFSIS 614 Query: 731 H-------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 S + ILR D G+GMT LE+ PF + ++Q GTGLG+ + + Sbjct: 615 EFHDNSPAYSKFQFILR--DNGMGMTPEFLERLFLPFERADEARQKNIAGTGLGMAITRN 672 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL 810 +V G + S P KGT + F L Sbjct: 673 IVHMLGGDITVASEPGKGTTFTVGFSL 699 >gi|307152390|ref|YP_003887774.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306982618|gb|ADN14499.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 999 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 132/238 (55%), Gaps = 8/238 (3%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KNQRFGPLGNPRYIEY 626 + L A + AE + KS+FL+RVSHE+RTPL AI+G+S+++ +N +P+ EY Sbjct: 516 QTALQKAAERAEIANRAKSEFLSRVSHELRTPLNAILGYSQLMNRNTSL----SPQQKEY 571 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I+RSG +L ++ND+L++SKIE+G+ L+ L + QL A+ K++ + Sbjct: 572 IEIINRSGEHLLSLINDVLEMSKIEAGQQTLNENSFDLYALLDSIEKTFQLKASAKKLGL 631 Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDT 744 + ++P+ ++ D ++Q+ N+L NAI FT +G + ++T ++ V DT Sbjct: 632 IFQRSQDVPQFVVTDESKLRQVLFNLLDNAIKFTQTGNVTLWVTTKEAPCLKIFFSVSDT 691 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G G+ EL PF Q + +GTGLGLP+++ ++ G+ + + G+ Sbjct: 692 GPGIAESELSVLFDPFVQTQAGLK-SMQGTGLGLPISRQFIELMGGELTVNTQLGSGS 748 >gi|148981902|ref|ZP_01816560.1| hybrid sensory histidine kinase BarA [Vibrionales bacterium SWAT-3] gi|145960703|gb|EDK26045.1| hybrid sensory histidine kinase BarA [Vibrionales bacterium SWAT-3] Length = 937 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 81/252 (32%), Positives = 134/252 (53%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K L N + +Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTH----LSNSQ-TDYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS N +L I+ND+LD SK+E+GK+ L P ++ E ++L A+EK + + Sbjct: 331 TIERSANNLLSIINDILDFSKLEAGKLALENIPFEFQASLEEVVNLQATNAHEKGLELTL 390 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDT 744 +P ++ D ++QI N++ N+I FT G + + + N E+ VRDT Sbjct: 391 KIDPKVPAGVVGDPLRIQQILTNLVGNSIKFTERGNIDISVELRSQSEDNIELQFMVRDT 450 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTF 510 Query: 805 EIIFPLYDTSHP 816 L T P Sbjct: 511 WFTLRLSTTDMP 522 >gi|330960926|gb|EGH61186.1| response regulator receiver [Pseudomonas syringae pv. maculicola str. ES4326] Length = 1167 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 131/244 (53%), Gaps = 15/244 (6%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR------YIEYANYIDR 632 ++ S +KS+FLA +SHE+RTPL + + ++++ NP+ +++A I Sbjct: 488 QRSSKYKSEFLANMSHELRTPLNSSLILAKLLAE-------NPKENLTAEQVKFAESIYS 540 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 +GN +L+++ND+LDISK+E+GK+ + E S+ V +L Q A EK++ Sbjct: 541 AGNDLLNLINDILDISKVEAGKLEVRPENSSVPRLVEGLRTLFQPLATEKKLAFTVDIQA 600 Query: 693 NIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 P +L D + ++QI N+LSNAI FT +G +I + ++ VRD+G+G+ Sbjct: 601 GAPTMLFTDRQRLEQILKNLLSNAIKFTEAGAVSMI-VSRQPGAGIVFSVRDSGIGIAPE 659 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + + F Q + R GTGLGL +++ + G + S P +G++ ++ P + Sbjct: 660 HQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFTLVLPEH 719 Query: 812 DTSH 815 T H Sbjct: 720 YTEH 723 >gi|328869028|gb|EGG17406.1| histidine kinase [Dictyostelium fasciculatum] Length = 1323 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 104/368 (28%), Positives = 184/368 (50%), Gaps = 29/368 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV---MNHY 512 S+ +S+ + +I++ GII+ N +F ++ IL P + + P++ +N Sbjct: 280 SLFNLSSEAL-VIHKNGIIVDANSTFENMFQVKLDSILH-PVAAAIGEFLPNIEQYLNKS 337 Query: 513 LTEILS------LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566 + +I LD ++ +E + + S+ EE + +R K+ + L++ D S ++ Sbjct: 338 MIDIHDQASFSLLDNKKIIETVAINSSGEEFSVEVRSQKKEFLSNPVDILSIIDTSARRK 397 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + +K AE + K +FL VSHE+RTP+ I+ ++++ L N + ++ Sbjct: 398 LMEADTALRK-AEAVNEAKINFLTNVSHEVRTPINGILASVDILEKTN---LDNTQG-DF 452 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + S N +LD++ D+LD SKIESGKM L ++ + E +++V E+ + + Sbjct: 453 LVCVKDSANYLLDLITDILDFSKIESGKMQLQPVEFNMITMLEETMNIVYSTTKERGLEL 512 Query: 687 RTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIII---------STTHTSNEE 736 IP I+ AD +KQI LN LSNAI FT S GQ++I S + S+ E Sbjct: 513 ILFVDPAIPIIVVADHYRIKQILLNFLSNAIKFT-STGQVVIRVNFVSCTPSVANPSSTE 571 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + V D+G+G+ ++EK F Q N +GTGLGL ++K + + G+ + Sbjct: 572 FKISFEVEDSGIGLRQEQIEKLFTAFLQFDNHGSRNFQGTGLGLSISKKLCNMMGGEITV 631 Query: 795 FSTPAKGT 802 ST G+ Sbjct: 632 KSTYGSGS 639 >gi|129306901|gb|ABO30413.1| GacS [Pseudomonas sp. P97.30] Length = 204 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 125/206 (60%), Gaps = 8/206 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHEIRTP+ I+GF+ +++ PR ++Y I++S + +L I+N++ Sbjct: 3 KSEFLANMSHEIRTPVNGILGFTHLLQKSEL----TPRQLDYLGTIEKSADSLLGIINEI 58 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRTSFANNIPRILADLRS 703 LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ + + ++ D Sbjct: 59 LDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLSLVGDPLR 118 Query: 704 VKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 +KQI N++SNAI FT G + ++ H + ++ + ++DTG+G++N ++ + F Sbjct: 119 LKQILTNLVSNAIKFTREGTIVARAMLEDEHEDSVQLRISIQDTGIGLSNQDVRALFQAF 178 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVD 786 Q NS + GTGLGL ++K +V+ Sbjct: 179 SQADNSLSRQPGGTGLGLVISKRLVE 204 >gi|332666257|ref|YP_004449045.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] gi|332335071|gb|AEE52172.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] Length = 814 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 77/266 (28%), Positives = 136/266 (51%), Gaps = 8/266 (3%) Query: 555 SLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 +L +H DI+E K + L ++ AE+ + FLA +SHEIR P+ +I+G + ++ + Sbjct: 288 TLGIHLDITEQKLLQVDLERTRQEAEQARDAEKAFLANISHEIRNPINSIVGMTNLLYDT 347 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + +EY N + S +L+ +V+D+LDISKIE GKM E E Sbjct: 348 YL----SEEQLEYVNTLKYSADLLHALVSDVLDISKIEQGKMEPQLEDFDFFEMAKAMCK 403 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + +++ I + + ++P R +D + QI +N+++NA FT G ++ Sbjct: 404 TFEFRLSQRPIQFQCEVSPSVPQRFRSDSTFINQILINLMNNAFKFTEEGTISCLAEAKF 463 Query: 733 SNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 +++ + V+DTG+G+ L + F Q + +++ +GTGLGLP+ K +V+ G Sbjct: 464 IDQQQWIEFIVKDTGIGIPPDRLPFIFERFNQAGKANKVQRDGTGLGLPITKQLVELLGG 523 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHP 816 + STP GT I+ P+ P Sbjct: 524 NIKVQSTPGVGTTFNILLPIEPALEP 549 >gi|209363989|ref|YP_001424551.2| two component system histidine kinase [Coxiella burnetii Dugway 5J108-111] gi|207081922|gb|ABS77049.2| two component system histidine kinase [Coxiella burnetii Dugway 5J108-111] Length = 683 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 81/245 (33%), Positives = 139/245 (56%), Gaps = 8/245 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK+ AE+ + KSDFLA +SHE+RTPL AI+G S+++K + + Sbjct: 291 ELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTHNLSDEQQGQ----IDV 346 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I ++G +L ++NDLLD +K+E+GK++ E + L E V + + L A++K I ++ Sbjct: 347 ISQTGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAHKKGIQLKFD 406 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEEVIL--RVRDTG 745 + NIP +++ D + ++Q+ +N+LSNA+ FT G Q+ + ++++ L V+DTG Sbjct: 407 YPENIPSKVMGDAKRIRQVLVNLLSNALKFTEKGYVQLTANCLKKDHKKMTLCFTVKDTG 466 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +GM +L F QI + Q + +G GLGL + K +++ G + S P G+ Sbjct: 467 IGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTSEPGVGSEFT 526 Query: 806 IIFPL 810 I P Sbjct: 527 CIIPF 531 >gi|34496337|ref|NP_900552.1| sensor/response regulator hybrid protein [Chromobacterium violaceum ATCC 12472] gi|34330295|gb|AAQ58556.2| probable sensor/response regulator hybrid protein [Chromobacterium violaceum ATCC 12472] Length = 902 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 130/252 (51%), Gaps = 8/252 (3%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 +L + DIS K ++ KL A + AE + KSDFLA +SHEIRTP+ AIIG + + Sbjct: 138 TLFIRDISNRKLQEGKLKQAMEEAESATRAKSDFLANMSHEIRTPMNAIIGLAHLALRTG 197 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 +P+ +Y I SG +L I+ND+LD SKIE+GK++L L+ + +L Sbjct: 198 L----DPKQRDYLQKIHNSGKHLLGIINDILDFSKIEAGKLDLENAEFDLERVLDNLAAL 253 Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + A K + + + R ++ D + QI +N +NA+ FT G + + Sbjct: 254 LGEKAEAKGLELIFDIGPGLDRSLIGDPLRLGQILINYANNAVKFTERGEVTVRARCREE 313 Query: 734 NEEVIL---RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + +L V DTG+G++ + K + F Q S + GTGLGL +++ + + G Sbjct: 314 RGDSLLLHFEVSDTGIGLSAEQKAKLFQSFQQADTSTSRKYGGTGLGLAISRKLAEMMGG 373 Query: 791 KFYIFSTPAKGT 802 + + S P KG+ Sbjct: 374 EVGVDSEPGKGS 385 >gi|269837966|ref|YP_003320194.1| histidine kinase [Sphaerobacter thermophilus DSM 20745] gi|269787229|gb|ACZ39372.1| histidine kinase [Sphaerobacter thermophilus DSM 20745] Length = 366 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 131/238 (55%), Gaps = 7/238 (2%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF-SEVIKNQRFGPLGNPRYIEYANYIDR 632 A ++A + + +SD A +SHE+RTPL +I G+ S ++ + R E+ ID Sbjct: 123 AGRLASQGAHLRSDLAAILSHEMRTPLASIKGYASALLLEDAYWDEETRR--EFLLAIDA 180 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 + + ++ D+LD S IE+G + + EP+ L V AI + L + R ++ SF Sbjct: 181 ETDHLTQLIEDVLDASIIEAGALRIEPEPILLPHMVRRAIDKLALRTDRHRFVL--SFPP 238 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 + P ++AD + Q+ N+L NA+ ++P GG I++S + +EV++ V D G+G+ Sbjct: 239 DFPAVMADALRIDQVLSNLLDNAVKYSPQGGLIVVS-GRVAGDEVVVSVADQGIGIAPEH 297 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 L K + + + + + R GTGLGLP++ A++ A+ G+ + ST +GT+ PL Sbjct: 298 LNKLFERYFRASTNGR-RVAGTGLGLPISDAIIRAHGGRIWAESTVGQGTVFSFTLPL 354 >gi|17231257|ref|NP_487805.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132899|dbj|BAB75464.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 443 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 76/233 (32%), Positives = 131/233 (56%), Gaps = 12/233 (5%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR---SGNLVL 638 S KS FLA +SHE+RTP+ AIIGF++++ +FG L + A+ ++R +G +L Sbjct: 171 SRLKSQFLATMSHELRTPMNAIIGFAQILSRPKFGNLTG----QQADMVERILNNGKHLL 226 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI--LIRTSFANNIPR 696 ++N++LD SK+E G++ L E L + ++ + ++ A K++ L++ N++ Sbjct: 227 MLLNEVLDFSKLEEGRLELKPELFDLTKVINAVVMEMRSLAEAKKLSLLVQIDLQNSL-- 284 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 ++ D +KQI +N+LSNAI FT SG I I V ++V+DTG+G+ + + Sbjct: 285 LVNDPVRIKQILINLLSNAIKFTDSGS-IWIDVKDLPGSWVEIKVKDTGIGIAAKDFKYI 343 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q+ S + GTGLGL + ++V GK ++ S G++ I P Sbjct: 344 FEAFRQVDQSITRKYPGTGLGLAIIDSLVQMMSGKIFLESQLGVGSIFTITLP 396 >gi|224535375|ref|ZP_03675914.1| hypothetical protein BACCELL_00237 [Bacteroides cellulosilyticus DSM 14838] gi|224523016|gb|EEF92121.1| hypothetical protein BACCELL_00237 [Bacteroides cellulosilyticus DSM 14838] Length = 497 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 84/248 (33%), Positives = 131/248 (52%), Gaps = 7/248 (2%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 ++K ++ L+ A + A KS FLA +SHEIRTPL AI+GFS ++ + L Sbjct: 253 KYKDTEDCLNEALRKARHSDELKSIFLANMSHEIRTPLNAIVGFSSLLAHGDLD-LTKDD 311 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 IE+ + I+++ L++ +++D+LD+SKIES M +F +SL + ++E I Q +K Sbjct: 312 IIEFTSLIEKNSQLLMVLISDILDLSKIESNTMEFNFCNISLHQVLNE-IGSAQRMNMKK 370 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + + I D + Q+ N+++NAI FT S G I I ++ V + V Sbjct: 371 GVELLLDLPGQEITISTDPTRLSQVINNLVNNAIKFT-SEGNICIGYRPATSNRVKIFVE 429 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG GM +E F + +Q GTGLGL + + + + GK + STP KGT Sbjct: 430 DTGTGMAKEVIEHIFDRFYKGDAFKQ----GTGLGLAICRTIAERFKGKIEVASTPGKGT 485 Query: 803 LIEIIFPL 810 II PL Sbjct: 486 RFTIILPL 493 >gi|254483091|ref|ZP_05096325.1| Two component regulator three Y motif family [marine gamma proteobacterium HTCC2148] gi|214036613|gb|EEB77286.1| Two component regulator three Y motif family [marine gamma proteobacterium HTCC2148] Length = 1484 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 83/253 (32%), Positives = 133/253 (52%), Gaps = 13/253 (5%) Query: 566 QEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 QE+ + L A+K AE + KSDFLA +SHEIRTP+ +IG +E++ + + + Sbjct: 833 QERTRELQDAQKSAESANQAKSDFLATMSHEIRTPMHGMIGMTELLLHTDL----SEQQK 888 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 ++A SG +L ++N++LD SKIE+ K+ L L E + E L A K + Sbjct: 889 QFARAAHNSGESLLSLINEILDFSKIEASKVELENIEFDLVELIDEICYLQGEPAARKGL 948 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EV 737 + + F P+ +L D V+Q+ +N++SNAI FT + G I + T+ ++E +V Sbjct: 949 ALNSIFDQTPPKTLLGDPTKVRQVVMNLVSNAIKFTHT-GNIDVCVTYKNSEDDRNKNDV 1007 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V+DTG+GM + + F Q S GTGLGL ++K ++ G I S Sbjct: 1008 TISVKDTGIGMDAATQNRVFEVFTQADTSTTREYGGTGLGLSISKHYIELMNGTIAIESQ 1067 Query: 798 PAKGTLIEIIFPL 810 P GT + + P Sbjct: 1068 PNIGTDLSVTVPF 1080 >gi|197116465|ref|YP_002136892.1| response receiver histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197085825|gb|ACH37096.1| response receiver histidine kinase response regulator [Geobacter bemidjiensis Bem] Length = 578 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 124/239 (51%), Gaps = 8/239 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTP+ ++G +E++ + + + Y + +SG +L I+ND+ Sbjct: 197 KSQFLANMSHEIRTPMNGVLGMAELLLHSEL----DEKQKSYVKILHQSGESLLGIINDI 252 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703 L+ISKIE+G++ + P L E A+ L + K + + ++PR ++ D Sbjct: 253 LNISKIEAGRLEIERIPFDLHETARGAVELYREVGRRKGVAVELQIEEDVPRCVVGDPSR 312 Query: 704 VKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 ++Q+ +N+++N + FT G ++ + + + + V V+DTG+G+ + F Sbjct: 313 LRQVLINVVNNGLKFTDKGSVQVRVTLVEQYQNGQYVAFEVKDTGIGIPADCIGDIFGLF 372 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 Q+ S + GTGLGL +AK +V+ G + S P +G+ I L+ + C Sbjct: 373 AQVDGSTTRKYGGTGLGLAIAKQLVELMGGAIGVESEPGQGSTFTFIVFLHRHADQTTC 431 >gi|160877018|ref|YP_001556334.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195] gi|160862540|gb|ABX51074.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195] gi|315269221|gb|ADT96074.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678] Length = 1238 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 130/250 (52%), Gaps = 8/250 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ K + L AK+ AE + +KS+FLA +SHEIRTP+ AIIG ++ + Sbjct: 694 THKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLT 753 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 Y+E A + S +L I+ND+LD SKIE+GK+ L P LD+ + A+ L Sbjct: 754 A-QQKDYLEKAGF---SAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNS 809 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 L A E+ + + IL D + Q+ +N+LSNA+ FT SG ++ + Sbjct: 810 LKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGEIELGCEDVGERD 869 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + L+ VRDTG+G+ + +K F Q S + GTGLGL ++K +V GK Sbjct: 870 HRITLKFWVRDTGIGIGKDQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKM 929 Query: 793 YIFSTPAKGT 802 + S G+ Sbjct: 930 QVQSELGVGS 939 >gi|312885460|ref|ZP_07745099.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311302040|gb|EFQ79070.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 648 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 135/255 (52%), Gaps = 14/255 (5%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L + DIS K +L +K++AE K FLA +SHE+RTP+ I+G + ++KN + Sbjct: 241 LNISDISPIKSYMEELIKSKELAEYGKKVKETFLANMSHELRTPVNGILGITALLKNTQL 300 Query: 616 GPLGNPRYIEYANYID---RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + N ID S +L ++ND+LDISKIE+GK N+ + ++ V Sbjct: 301 DS-------QQKNMIDLLGSSSQSLLGVINDVLDISKIEAGKFNIIRKQGNIHHIVRSVY 353 Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG-GQIIISTT 730 L++ +EK + + A N+P ++ D + QI +N+LSNAI FT G ++ +S Sbjct: 354 DLLKFKTDEKDVELLLDIAPNVPSNVMVDSLRINQIMMNLLSNAIKFTDRGYVKLTVSVV 413 Query: 731 HTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + V L+ V DTG+G+++ L K F Q + + GTGLGL + K +V+ Sbjct: 414 QQDVDRVKLKFSVEDTGIGISSENLNKIFDSFEQAEDDTSNKYGGTGLGLAIVKKLVELK 473 Query: 789 MGKFYIFSTPAKGTL 803 G+ + S KG++ Sbjct: 474 GGELTVSSQIGKGSI 488 >gi|296156019|ref|ZP_06838858.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] gi|295893525|gb|EFG73304.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] Length = 776 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 96/389 (24%), Positives = 174/389 (44%), Gaps = 28/389 (7%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +++ + +++ +I E SD I I + G I N ++ GY + +IL +P +FL Sbjct: 272 RKEAQTVLLRQAAIFEHLSDAIVITDLRGNITDFNVGGERMLGYRMREILGRPVAMFLPP 331 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR--------IIIKKLPFS--SC 553 + L + G+ + E R ++K L + Sbjct: 332 E----------QALGIRREALAALAAEGTWRSELPFVRRDGSRGVCETVVKPLANARGDV 381 Query: 554 YSLTM--HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 Y DI+E ++ + +L+ K K +FLA ++HE+R PL + E+++ Sbjct: 382 YGAVSINRDITERRRAEQQLTRLNLELSKADRRKDEFLATLAHELRNPLAPMRNVLEILR 441 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + F +P+ + DR + +V+DLL++S+I GK+ L + + L A+ A Sbjct: 442 LKEFA---DPQLSWSRDVFDRQLQHMTHLVDDLLEVSRITQGKLELRKQRLELARAMQSA 498 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + + + + ++AD + Q+ LN+L+NA +TP GG I ++ Sbjct: 499 MEAARPTVQASSHHLSVTLPREPLYLIADPTRLSQMILNLLNNAAKYTPPGGSISLAAER 558 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 +E VI+ VRD+G+G+ L+ + F Q+ + G G+GL L + + + + G Sbjct: 559 EGDEAVIV-VRDSGIGIPGEHLDSVFEMFSQLAPALDRSQGGLGIGLALVRGLAELHGGT 617 Query: 792 FYIFS-TPAKGTLIEIIFPLYDT-SHPHD 818 FS P KG+ I PL T S P D Sbjct: 618 VAAFSEGPGKGSEFMIRLPLTKTASQPSD 646 >gi|298528781|ref|ZP_07016185.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298512433|gb|EFI36335.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1625 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 136/246 (55%), Gaps = 8/246 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E KQ + L A+ A++ + KS+FLA +SHEIRTP+ +IG ++++ + Sbjct: 899 DITELKQSQLDLQEARDKAQEATRAKSEFLANMSHEIRTPMNGVIGMTDLLMDTEL---- 954 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P A I SG +L ++ND+LD SKIE+G++ L +L + + SL+ + A Sbjct: 955 RPEQRSLAESIQSSGEALLALINDILDFSKIEAGRLELESVDFNLRYLLEDLASLMAVRA 1014 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEV 737 +EK + + ++P ++ D ++QI N++ NAI FT G ++ + + S ++V Sbjct: 1015 DEKGLELICLPDPDVPAQVQGDPGRLRQILTNLVGNAIKFTHQGEVVVRVQRSEVSADDV 1074 Query: 738 IL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +L V+DTG+G+ +++ F Q+ S + GTGLGL +++ + + G+ + Sbjct: 1075 LLLFTVQDTGIGIPEDKIDLLFNKFSQVDASTTRKFGGTGLGLAISRQLAEMMGGEVGVQ 1134 Query: 796 STPAKG 801 S +G Sbjct: 1135 SEYGRG 1140 >gi|325571476|ref|ZP_08146976.1| sensor histidine kinase VicK [Enterococcus casseliflavus ATCC 12755] gi|325155952|gb|EGC68148.1| sensor histidine kinase VicK [Enterococcus casseliflavus ATCC 12755] Length = 613 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 103/398 (25%), Positives = 188/398 (47%), Gaps = 36/398 (9%) Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 ++ Q E Q G E+ + ME E +L S+L +DG+ +R G +++ N Sbjct: 235 DELGQLAETFNQLGERIEET-----QEAMESERNRLDSVLSHMTDGVVATDRRGKVITIN 289 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 L E+ + + LE + + L + L + +T G+ Sbjct: 290 EMAMSLLNVTNEEAIGQSILTILEIDEEYTLRKLLENPEDMLLERPSNDLT-GTN----- 343 Query: 539 LSLRI----IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 L LRI I ++ F S MHD++E QEKN+ + +F++ VSH Sbjct: 344 LILRIDFSMIRRESGFISGLVAVMHDVTE--QEKNE------------QERREFVSNVSH 389 Query: 595 EIRTPLTAIIGFSEVIKNQRF-GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 E+RTPLT++ + E + + P P +++ +D + ++ ++NDLL +S+++SG Sbjct: 390 ELRTPLTSMRSYIEALSEGAWKDPEIAPNFLKVT--LDETDRMI-RMINDLLSLSRMDSG 446 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYA-NE-KRILIRTSFANNIPRILADLRSVKQIALNI 711 L E ++ +E V+ + + NE K+ LIR F + D + Q+ NI Sbjct: 447 NSQLQLEYINFNEMVNFVLDRFDMMVTNESKKYLIRREFTKRELWVEVDTDKMIQVIDNI 506 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 ++NAI ++P GG I + T N ++L + D G+G+ +L K F ++ ++ + Sbjct: 507 MNNAIKYSPDGGIITVKLMETHNN-IVLSINDQGLGIPKKDLTKIFDRFYRVDKARARQQ 565 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL +++ ++ A+ G + S +G+ I+ P Sbjct: 566 GGTGLGLAISREVIKAHGGAIWAESRENRGSTFYIMLP 603 >gi|161503513|ref|YP_001570625.1| hypothetical protein SARI_01589 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864860|gb|ABX21483.1| hypothetical protein SARI_01589 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 936 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 80/257 (31%), Positives = 131/257 (50%), Gaps = 11/257 (4%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 S+ + + L+ AKK AE+ + KS L +SHE+RTP+ ++G E+++ + Sbjct: 389 SKVAERTHALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPLN-IKQQ 447 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + A Y S +L ++N+LLD S+IESG LH E +L + + + +Q A Sbjct: 448 GLADTARYCTLS---LLTLINNLLDFSRIESGHFTLHMEETALLPLLDQTMQTIQGPAQS 504 Query: 682 KRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K++ +RT ++P D ++QI +N+L NA+ FT +GG I T E++I Sbjct: 505 KKLSLRTFVGQHVPLYFHTDAIRLRQILVNLLGNAVKFTETGG--IRLTVKRHAEQLIFL 562 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D+G G+ + K F Q + Q GTG+GL +A ++ G+ I S P Sbjct: 563 VSDSGKGIEIQQQPKIFTAFYQADTNSQ----GTGIGLTIASSLAKMMGGELKIDSIPGV 618 Query: 801 GTLIEIIFPLYDTSHPH 817 GT I ++ PL + P Sbjct: 619 GTCISLVLPLQEYQPPQ 635 >gi|320158979|ref|YP_004191357.1| CheY-like receiver [Vibrio vulnificus MO6-24/O] gi|319934291|gb|ADV89154.1| CheY-like receiver [Vibrio vulnificus MO6-24/O] Length = 881 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 88/258 (34%), Positives = 136/258 (52%), Gaps = 15/258 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I E +Q+ ++ HAK+ A + KS FLA +SHEIRTPL IIG +E++ + Sbjct: 350 IDEKQQQMVEIIHAKESAISANRAKSVFLANMSHEIRTPLNGIIGMTEILSQSEL----S 405 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + E ID S +L ++ND+LD+SKIESG +N+ + + E V +A++L Q A Sbjct: 406 SQQKEILGDIDTSSQSLLILLNDILDLSKIESGNLNISLQEADIRETVYQAMTLFQSKAT 465 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST-------THT 732 K I + + +IP +++AD +KQ+ N++ NAI FT G IST H Sbjct: 466 SKNIELHITMGEDIPAKVMADDHRIKQVLTNLVGNAIKFTKEG---YISTFVNYQADEHD 522 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + +V DTG+G+ +LE +PF Q +S + GTGLGL + + +V G+ Sbjct: 523 HQGYLTFKVTDTGIGIDQAKLETIFEPFTQEDDSITRQFGGTGLGLAICRQLVAMMGGEL 582 Query: 793 YIFSTPAKGTLIEIIFPL 810 ST G+ P+ Sbjct: 583 TATSTKGLGSCFSFTIPV 600 >gi|260223382|emb|CBA33893.1| hypothetical protein Csp_B21310 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 769 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 85/265 (32%), Positives = 144/265 (54%), Gaps = 16/265 (6%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E E+ ++++ K A+ ++ KS FLA +SHE+RTPL ++G ++++ P+ N + Sbjct: 184 ERMHEQMRVANEK--ADAANAGKSQFLANMSHELRTPLNGMLGMLSLLEST---PV-NAQ 237 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +Y +RS +L ++ND+LD S +E+GKM L E V L V + +L++ A EK Sbjct: 238 QDDYIQTANRSAKHLLSLLNDILDASALEAGKMTLKPESVHLPSLVGDVQALMRPVALEK 297 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----- 736 R+++ ++PR +LAD VKQI LN++SNA+ F+ G + + + EE Sbjct: 298 RLVLSVKADKDLPRWVLADGTRVKQIMLNLVSNALKFSEH-GTVSVEVFSPAGEELKAGD 356 Query: 737 ---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + +RV D G+GM+ L K + F Q S R GTGLGL +++++ G Sbjct: 357 DVALKIRVTDEGMGMSADVLAKLFQRFEQGNASSARRHGGTGLGLEISRSLARRMGGDIE 416 Query: 794 IFSTPAKGTLIEIIFPLYDTSHPHD 818 + S KG++ L +S P++ Sbjct: 417 VSSVEGKGSVFTATLCLPLSSPPNE 441 >gi|54308425|ref|YP_129445.1| putative sensor protein TorS [Photobacterium profundum SS9] gi|46912854|emb|CAG19643.1| Hypothetical sensor protein TorS [Photobacterium profundum SS9] Length = 983 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 79/240 (32%), Positives = 134/240 (55%), Gaps = 9/240 (3%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A+ AEK + KS FLA +SHEIRTP+ I+G + ++ + N + Y N I+RS Sbjct: 459 ARAEAEKANRAKSAFLATMSHEIRTPMNGILGTASLLGDTGL----NQQQARYLNVINRS 514 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +LDI+ND+LD SKIE+G +++ SL E V + ++++ A K I + ++ Sbjct: 515 GETLLDILNDILDYSKIEAGHLDIRPVDFSLSELVLDVHNMLESRALAKHIQLVNHIDDS 574 Query: 694 IPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--EEVILRVRDTGVGMTN 750 + + L D+ ++Q+ +N++ NAI FT GQ+ I+ + + +E++ V D+G+G+ Sbjct: 575 MNNVWLGDVTRIRQVLINLVGNAIKFTDQ-GQVTIAVSMNPDMPDELLFEVTDSGIGIDE 633 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 E + F Q ++ G GTGLGL +++ +V A G+ + ST G+ PL Sbjct: 634 AEQDILFNAFKQAEEGRKTIG-GTGLGLAISRHIVAAMEGEIGVDSTINVGSCFWFSIPL 692 >gi|281178110|dbj|BAI54440.1| two-component sensor kinase [Escherichia coli SE15] Length = 900 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 85/250 (34%), Positives = 132/250 (52%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK + KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKANQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E ++ V D+G Sbjct: 535 TEIADDVPTALMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRTDGERWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMSGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 649 RLPLRVATAP 658 >gi|254294725|ref|YP_003060748.1| histidine kinase [Hirschia baltica ATCC 49814] gi|254043256|gb|ACT60051.1| histidine kinase [Hirschia baltica ATCC 49814] Length = 859 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 78/255 (30%), Positives = 134/255 (52%), Gaps = 18/255 (7%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A K S KS FLA +SHE+RTP++ ++G + ++ PL + E I +SG + Sbjct: 481 ARKLSEVKSRFLANMSHEVRTPMSGVLGLTSALEQ---TPLTKEQN-ELVVLIAQSGAYM 536 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--RILIRTSFANNIP 695 ++I++D+LD ++I+ + + + S +E +S + Q +E +++ + F N + Sbjct: 537 VNILDDILDFAQIDRDNITIRIDAFSPNELLSSTYAFFQKNTHEAGLELILDSKFQNELV 596 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI------LRVRDTGVGMT 749 L D + ++QI N++SNAI FTP+G QI + T +++V V DTG+GM Sbjct: 597 -TLGDEKRIRQILFNLISNAIKFTPNG-QITLRAWCTQSDQVDTQCELHFEVSDTGIGMD 654 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT----LIE 805 ++E PF Q+ +++ R G GLGL + K ++DA G + S P GT + Sbjct: 655 EKQMENIFDPFAQVDMTKRRRYGGLGLGLSICKQLLDAMGGAISVTSIPGSGTNFSFYVP 714 Query: 806 IIFPLYDTSHPHDCI 820 + P S P + I Sbjct: 715 VDVPTSQKSQPAEII 729 >gi|268317258|ref|YP_003290977.1| histidine kinase [Rhodothermus marinus DSM 4252] gi|262334792|gb|ACY48589.1| histidine kinase [Rhodothermus marinus DSM 4252] Length = 1346 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 82/268 (30%), Positives = 133/268 (49%), Gaps = 22/268 (8%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI------ 610 T+ D+ ++ K +L A + + S KS+FLA +SHEIRTP+ ++G +E++ Sbjct: 791 TLEDL---RRTKEELERANEELVRASRLKSEFLANMSHEIRTPMNGVLGMTELLLEMDLT 847 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 K QR E I RSG +L I+ND+LD SKIE+G++ L +L E + + Sbjct: 848 KEQR----------ECVEIIHRSGETLLTILNDILDFSKIEAGRLELENIDFNLQETIED 897 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 I+L A K++ + + D ++Q+ N++ NAI FT G ++ + Sbjct: 898 VITLFAPRAAAKQLELICFIEERALEVQGDPHRLRQVLSNLIGNAIKFTERGEVVVEAEL 957 Query: 731 HTSNEEVI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 +E + VRDTG+G+ L +PF Q+ S R GTGLGL ++K +V+ Sbjct: 958 ERLDERRAHWRISVRDTGIGIPPDRLSHLFQPFTQLDGSTTRRYGGTGLGLAISKQLVEM 1017 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 G + S KG+ + P +S Sbjct: 1018 MGGTIGVESEVGKGSTFTVRIPFRLSSQ 1045 >gi|50120141|ref|YP_049308.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Pectobacterium atrosepticum SCRI1043] gi|49610667|emb|CAG74112.1| two-component system sensor protein [Pectobacterium atrosepticum SCRI1043] Length = 951 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 86/260 (33%), Positives = 130/260 (50%), Gaps = 7/260 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 441 VLLDVSARVKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLP 500 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 N + N S +L+L I++D+LD SKIES ++ + + E +S S Sbjct: 501 KDANRLVVAMNN----SSSLLLKIISDILDFSKIESEQLKIEPCEFAPHEVISHITSNYL 556 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +KR+ + A N+P + D ++Q+ N+LSNAI FT +G II + Sbjct: 557 PLVVKKRLTLYCFIAPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDTG--CIIFEVGCRDG 614 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + VRDTGVG+ E K PF Q + Q +GTGLGL + + +V+ G I Sbjct: 615 YLEFVVRDTGVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITIE 674 Query: 796 STPAKGTLIEIIFPLYDTSH 815 S P G+L + PLY + Sbjct: 675 SEPGLGSLFGVRIPLYKARY 694 >gi|317152269|ref|YP_004120317.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316942520|gb|ADU61571.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 922 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 80/250 (32%), Positives = 133/250 (53%), Gaps = 9/250 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K+ ++ L AK+ AE+ + K +FLA +SHE+RTPL ++G ++I R Sbjct: 526 DITERKRYEDALVVAKEAAEQANRAKDEFLANISHEVRTPLNGVMGMLQLI---RVSATS 582 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + I S NL L ++ND+LD SKIE+GK++L+ EP L + + +SL + A Sbjct: 583 GEQLANVDIAIQSSRNL-LRVLNDVLDFSKIEAGKLDLYNEPFDLAGLMRQCVSLFKQQA 641 Query: 680 NEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQII----ISTTHTSN 734 +EK +++ + + L D ++Q+ N+L NAI FT G + ++ Sbjct: 642 DEKGLVLDSRIDPSARECYLGDEGRIRQVLFNLLGNAIKFTMYGSITLEAYALAHPEPGC 701 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E + V DTGVG+ + +++ F Q+ +S + +G GLGLP+ K ++ G + Sbjct: 702 ERLFFSVTDTGVGIPDSKVDYIFDSFTQVDSSLSRKYKGVGLGLPIVKRLIRLLGGTLVV 761 Query: 795 FSTPAKGTLI 804 S GT I Sbjct: 762 DSEMGAGTTI 771 >gi|209695938|ref|YP_002263868.1| hybrid sensory histidine kinase BarA [Aliivibrio salmonicida LFI1238] gi|208009891|emb|CAQ80204.1| response regulator, histidine kinase VarS [Aliivibrio salmonicida LFI1238] Length = 929 Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 82/251 (32%), Positives = 134/251 (53%), Gaps = 8/251 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ Q + +Y Sbjct: 275 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFT----RQMLKTSLSDNQKDYLQT 330 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P +++ E +SL+ A+EK + I Sbjct: 331 IERSANNLLTIINDILDFSKLEAGKLLLENLPFDFQDSLDEVVSLLAPSAHEKGLEITLK 390 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILRVRDTG 745 IP ++ D ++Q+ N++ N+I FT G I I H +++ +V VRDTG Sbjct: 391 IDPRIPSGLIGDPLRIQQVLNNLVGNSIKFTEKGNIDISIELKHLNDDFIDVQFVVRDTG 450 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEIGLSSRLHQGSTFW 510 Query: 806 IIFPLYDTSHP 816 ++ T P Sbjct: 511 FTMRMHPTELP 521 >gi|325981529|ref|YP_004293931.1| multi-sensor signal transduction histidine kinase [Nitrosomonas sp. AL212] gi|325531048|gb|ADZ25769.1| multi-sensor signal transduction histidine kinase [Nitrosomonas sp. AL212] Length = 683 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 78/257 (30%), Positives = 145/257 (56%), Gaps = 20/257 (7%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DI+E K + L A+ AE+ + KS+FL+ +SHE+RTP+ AI+GFS++++ + Sbjct: 410 VEDITERKAAELSLISARYEAERANKAKSEFLSSMSHELRTPMNAILGFSQLLELEGL-- 467 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + R++ Y I +G +L +++++LD++KIESG+++L E + + V E I+LV++ Sbjct: 468 --DDRHLTYVKGIKSAGVHLLALIDEVLDLAKIESGRIDLQPEWIDICTVVEECINLVKI 525 Query: 678 YANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A+ + I L + A+ + + D KQI LN++ NAI + GG + I ++ N Sbjct: 526 QADGQDIKLTHSGMADKV--LYTDRIRFKQIILNLIHNAIKYNRKGGWVHIELKNSDNPG 583 Query: 737 VI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-------- 787 + + V D+G+G+ L + +PF ++ + EGTG+GL L + +++ Sbjct: 584 YLKIIVIDSGIGIAANRLTQLFQPFNRLDAAGSAI-EGTGIGLSLTRRIIEMMGGRIGVE 642 Query: 788 ---NMGKFYIFSTPAKG 801 +G + F PA+G Sbjct: 643 SELGVGSTFWFELPARG 659 >gi|37676889|ref|NP_937285.1| hypothetical protein VVA1229 [Vibrio vulnificus YJ016] gi|37201433|dbj|BAC97255.1| conserved hypothetical protein [Vibrio vulnificus YJ016] Length = 881 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 88/258 (34%), Positives = 136/258 (52%), Gaps = 15/258 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I E +Q+ ++ HAK+ A + KS FLA +SHEIRTPL IIG +E++ + Sbjct: 350 IDEKQQQMVEIIHAKESAISANRAKSVFLANMSHEIRTPLNGIIGMTEILSQSEL----S 405 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + E ID S +L ++ND+LD+SKIESG +N+ + + E V +A++L Q A Sbjct: 406 SQQKEILGDIDTSSQSLLILLNDILDLSKIESGNLNISLQEADIRETVYQAMTLFQSKAT 465 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST-------THT 732 K I + + +IP +++AD +KQ+ N++ NAI FT G IST H Sbjct: 466 SKNIELHITMGEDIPAKVMADDHRIKQVLTNLVGNAIKFTKEG---YISTFVNYQADEHD 522 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + +V DTG+G+ +LE +PF Q +S + GTGLGL + + +V G+ Sbjct: 523 HQGYLTFKVTDTGIGIDQAKLETIFEPFTQEDDSITRQFGGTGLGLAICRQLVAMMGGEL 582 Query: 793 YIFSTPAKGTLIEIIFPL 810 ST G+ P+ Sbjct: 583 TATSTKGLGSCFSFTIPV 600 >gi|307721710|ref|YP_003892850.1| integral membrane sensor hybrid histidine kinase [Sulfurimonas autotrophica DSM 16294] gi|306979803|gb|ADN09838.1| integral membrane sensor hybrid histidine kinase [Sulfurimonas autotrophica DSM 16294] Length = 1053 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 136/259 (52%), Gaps = 23/259 (8%) Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 YSL I + KQ+K + A++ S KS FLA +SHEIRTPL I+GF+E++K+ Sbjct: 364 AYSLLEKIIEQTKQDK-------EAAQEASEAKSMFLANMSHEIRTPLNGIVGFTELLKD 416 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVS 669 E+ I++S +L+I+N++LD+SKIES K+ + F P+ E Sbjct: 417 TGL----KEEQQEFVEIIEKSSENLLEIINNILDLSKIESNKLEIEDVIFNPI---EEFE 469 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIII- 727 A+ + + A+EK I + + + L D +K++ +N+LSNA+ FT S G I + Sbjct: 470 SAVDVYAVRASEKHIDLGCFIDPELEQPLKGDPTKIKEVVINLLSNAVKFTSSSGAINVD 529 Query: 728 ----STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + V V+D+G+G+T+ + + + F Q S + GTGLGL ++ Sbjct: 530 IRKLQSPQEGTTRVKFEVQDSGIGVTSEQKSRIFEAFSQADTSITRKYGGTGLGLTISAR 589 Query: 784 MVDANMGKFYIFSTPAKGT 802 ++ G+ + S P +GT Sbjct: 590 FIELMGGQLDLHSEPGEGT 608 >gi|167588508|ref|ZP_02380896.1| multi-sensor hybrid histidine kinase [Burkholderia ubonensis Bu] Length = 1238 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 128/227 (56%), Gaps = 6/227 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLAR+SHEIRTP+ ++G +E+++ R + + + + RSG +L I++D+ Sbjct: 562 KSEFLARMSHEIRTPMNGVLGMTELLQRTRL----TAKQRSFVDTVYRSGQTLLTIIDDI 617 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703 LD SKIE+GK+ L +L + + + +SL++ A K + +R + +P + D Sbjct: 618 LDFSKIEAGKLMLERIEFNLYQLLDDVVSLLEPTAARKGLALRFRRQDPVPEWVRGDPVR 677 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 ++QI N++ NAI FT GQ+ ++ ++ + V+ + D+G+G+ + KPF Q Sbjct: 678 LRQILTNLVGNAIKFTER-GQVELAVAYSDHGLVVFTIADSGIGIAPDVSAQLFKPFQQA 736 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +S + GTGLGL +++ + + G + S P +G++ + L Sbjct: 737 DSSTARKYGGTGLGLVISRQLAEMMGGTLTVESAPGRGSVFTVTARL 783 >gi|117924091|ref|YP_864708.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607847|gb|ABK43302.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1101 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 102/381 (26%), Positives = 175/381 (45%), Gaps = 25/381 (6%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 ++ E+++ +L + +E + I I N+EG I N + GY +++L + + Sbjct: 456 KQRELDLHKLSTAVEQSPIAIVITNQEGAIEYVNPHFCNISGYSAQEVLGENPRLL---K 512 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITL------GSTKEEK--LLSLRIIIKKLPFSSCYSL 556 + + Y E+ S R + + GST E + +R I + +S Y Sbjct: 513 SGEMAAAYYQELWSTITRGEVWRGEFRNRRKNGSTYWESATIAPVRDINGQ---TSHYIA 569 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 DIS K + +L + ++ S KSDFLA +SHEIRTP+ I+G + +K Sbjct: 570 LKEDISLRKSYEEQLIEERHKYQEASRVKSDFLATISHEIRTPMNTILGMTGELKESHL- 628 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + ++ I + + +L I+ND+LD S+ E+G + L P+ L + VSEA +V Sbjct: 629 ---SGEQLKLLQSIQAAASNLLQIINDVLDFSRFEAGSIELFIAPLLLRQVVSEAEQIVA 685 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII------ST 729 ++ I T + +P I D + ++Q+ +N+L NA FT G ++ Sbjct: 686 FQIRKQGIRFLTYMDSTVPPFIFGDAQRLRQVLVNLLVNASKFTEQGTIALLVHLQPGKA 745 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + +E+ RV DTG+G++ +K F Q S + GTGLGL ++K +V Sbjct: 746 EASDQQELCFRVVDTGIGISEAHRDKLFHAFSQADGSITRQYGGTGLGLSISKHLVGMMG 805 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G S G+ PL Sbjct: 806 GTIGFESCQGVGSTFWFTLPL 826 >gi|220907215|ref|YP_002482526.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219863826|gb|ACL44165.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1501 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 125/224 (55%), Gaps = 4/224 (1%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 ++ AE + K +FLA +SHE+R+PL I+G++++++ + F P R + I+R Sbjct: 1120 RCREAAESANRIKDEFLAVLSHELRSPLNPILGWTKLLQTRPFDP---QRTQQALQTIER 1176 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 + L ++ DLLDIS+I GKM L+ PV+L + A+ V+L A K I ++T + Sbjct: 1177 NAKLQTQLIEDLLDISRILQGKMVLNTSPVNLITTIEAALDTVRLAAETKGIELQTCLSP 1236 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 + R+ D ++QI N+L+NA+ FTP+GG+++I + I +V+DTG G++ Sbjct: 1237 AVGRVYGDSTRLQQIVWNLLTNAVKFTPAGGKVLIRLEQVDSFAQI-QVQDTGKGISPAF 1295 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 L + F Q + + G GLGL + + + + + G + S Sbjct: 1296 LPHVFEYFRQEDSQTTRKFGGLGLGLAIVRYLTEQHGGTVEVES 1339 >gi|187930424|ref|YP_001900911.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J] gi|187727314|gb|ACD28479.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J] Length = 1436 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 74/259 (28%), Positives = 133/259 (51%), Gaps = 10/259 (3%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D++ +++ + L AK AE K FLA +SHEIRTP+ ++G E+++ + Sbjct: 806 LSDVTAEREQADALEAAKNAAESALHAKDRFLAMMSHEIRTPMNGVLGLVELLQQTKL-- 863 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + + + SG +L I++D+LD +KIE+G++++ L E + L+ Sbjct: 864 --EGEQKQMVSLVQDSGRALLHILDDILDYAKIEAGRLDISPAATDLREVFDGTVGLLAS 921 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A+EK + + + A ++P + D ++QI N+LSNAI FT +G + + ++ Sbjct: 922 RAHEKSLAVHVTVAADVPASVSVDSIRLRQILFNLLSNAIKFTDTGSVRLSAECARVTDD 981 Query: 737 ---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +I+ V DTG+G++ PF Q S R GTGLGL +++ + GK Sbjct: 982 TAHLIISVTDTGIGISPAVQATLFAPFVQAERSTTRRYGGTGLGLAISRQLAGLMGGKLV 1041 Query: 794 IFSTPAKGTLI--EIIFPL 810 + S +GT + E+ P+ Sbjct: 1042 MESAQGQGTAVTLELTVPM 1060 >gi|312135285|ref|YP_004002623.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor owensensis OL] gi|311775336|gb|ADQ04823.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor owensensis OL] Length = 575 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 135/239 (56%), Gaps = 16/239 (6%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY-IEYANYIDRSGNLVLDIVND 643 +SDF+A VSHE++TPLT+I GF E +K+ G + + I++ N I+ ++ ++ND Sbjct: 346 RSDFVANVSHELKTPLTSIKGFVETLKD---GAIDDKDVAIKFLNIIEVEVERLVRLIND 402 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-----IL 698 LL +S+IE+ M + E V++ E V E+I L+++ A +K I F +P I Sbjct: 403 LLYLSEIENAAMPILDEKVAVKEVVLESIELLKIKAEKKNI----QFDIKVPEGLEMNIY 458 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 D +KQI +N++ NAI + G++ + T N V+++V+DTG+G+ E+E+ + Sbjct: 459 RDW--LKQIFINLIDNAIVYNKENGKVWV-TLEKPNGMVVIKVKDTGIGIPEKEIERIFE 515 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 F ++ + + GTGLGL + K +V+ GK ++ S G+ + P+ + PH Sbjct: 516 RFYRVDKGRSRKLGGTGLGLSIVKHIVELYGGKIWVKSQEGSGSEFTVTIPIKKKADPH 574 >gi|169333792|ref|ZP_02860985.1| hypothetical protein ANASTE_00177 [Anaerofustis stercorihominis DSM 17244] gi|169259357|gb|EDS73323.1| hypothetical protein ANASTE_00177 [Anaerofustis stercorihominis DSM 17244] Length = 541 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 133/250 (53%), Gaps = 7/250 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++++ KLS ++AE S KS+FL+R+SHEIRTP+ IIG +++ P + + Sbjct: 143 QKKQRKLSIELQVAETASQEKSNFLSRMSHEIRTPMNGIIGMTDIACMNYDNP---EKSL 199 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + N I S +L ++ND+LD+S+IE+GK+ L+ + L + A++ + Sbjct: 200 DCLNKIKLSSEYLLSLINDILDMSRIENGKIELYKQTFDLCGFCERLYIMFSQRAHDASL 259 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEEVIL---R 740 + P ++ D + Q+ +NILSNA+ FT + G+I + ++E+ L Sbjct: 260 DFNITSNITRPYLIGDELRLNQVVVNILSNALKFTRTNGRIDVDVNQKIIDDEICLLTIT 319 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D+G+GM+ L K +PF Q N+ + GTGLGL ++ ++ GK + S K Sbjct: 320 VEDSGIGMSKEFLAKIFEPFEQEVNTTSHQFAGTGLGLAISHNLIKLMNGKINVSSEQGK 379 Query: 801 GTLIEIIFPL 810 G+ EI L Sbjct: 380 GSKFEISVEL 389 >gi|304410894|ref|ZP_07392511.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|307304935|ref|ZP_07584685.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] gi|304350791|gb|EFM15192.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|306912337|gb|EFN42761.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] Length = 1238 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 130/250 (52%), Gaps = 8/250 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ K + L AK+ AE + +KS+FLA +SHEIRTP+ AIIG ++ + Sbjct: 694 THKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLT 753 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 Y+E A + S +L I+ND+LD SKIE+GK+ L P LD+ + A+ L Sbjct: 754 A-QQKDYLEKAGF---SAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNA 809 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 L A E+ + + IL D + Q+ +N+LSNA+ FT SG ++ + Sbjct: 810 LKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGEIELGCEDVGERD 869 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + L+ VRDTG+G+ + +K F Q S + GTGLGL ++K +V GK Sbjct: 870 HRITLKFWVRDTGIGIGKDQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKM 929 Query: 793 YIFSTPAKGT 802 + S G+ Sbjct: 930 QVQSELGVGS 939 >gi|154706014|ref|YP_001424051.1| two component system histidine kinase [Coxiella burnetii Dugway 5J108-111] gi|154355300|gb|ABS76762.1| two component system histidine kinase [Coxiella burnetii Dugway 5J108-111] Length = 630 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 95/352 (26%), Positives = 169/352 (48%), Gaps = 21/352 (5%) Query: 469 NREGIILSTNRAVSKLFGY--PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 +R + L N +KL G+ P I + F ++ Q S+ + + L + Sbjct: 139 DRNFVYLGCNHNFAKLVGFETPESIIGKTDFDLWRSQGANSIRPTDVEVLEGKQLVDVEQ 198 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYS------LTMHDISEWKQEKNKLSHAKKIAEK 580 ++L + KE L I K+P + + DI+E KQ + KL AK AE Sbjct: 199 SLSLPNGKEGVFL-----ISKVPLRDERNEIIGILVVGTDITERKQNEQKLIEAKLQAEL 253 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 KS+F+A +SH++RTP+ I+G +++ P N + S NL+L + Sbjct: 254 SDRAKSEFIANISHDLRTPINGILGIAQIFNMHEHTKKQEP----LINDLSASANLLLGL 309 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILA 699 V D+LD +++E GK+ L + +L + V+ + +K+I I + ++P I++ Sbjct: 310 VEDILDFARLEVGKLELKYSTFNLRQLVTFLVKTFSFQTQQKQIKINIYYDASLPDSIVS 369 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAM 757 + +++I LN++ NA+ FT GQI ++ N+ +L+ V+DTG+G+ +L Sbjct: 370 EPNYIRRIFLNLIGNAVKFTEK-GQIDVTVNLEGNKPAMLKILVKDTGIGIPKDKLNTIF 428 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F + R EG GLGL + K +VD G+ ++ S +G+ + P Sbjct: 429 DRFSRATPVYSSRYEGLGLGLSIIKRLVDNLGGEVHVSSIENEGSTFTLTIP 480 >gi|170724253|ref|YP_001751941.1| multi-sensor signal transduction histidine kinase [Pseudomonas putida W619] gi|169762256|gb|ACA75572.1| multi-sensor signal transduction histidine kinase [Pseudomonas putida W619] Length = 592 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 100/368 (27%), Positives = 174/368 (47%), Gaps = 41/368 (11%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-------PVEDILRKPFTVFLEQNT 505 +L ++L++ DG+ II+R+G + N + G+ P+ + L++P LEQ Sbjct: 256 RLQAVLDSIDDGLLIIDRQGHLEHLNPVAQRQLGWSNNRLGSPLAEALQRPE---LEQQL 312 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISE 563 V+ SLD + E +++ +E +LLS + P M HD++E Sbjct: 313 RQVLRGG-----SLD--RPPEDLSIEVDEESRLLSYSLTPVSHPQGPILGAVMVLHDVTE 365 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI-IGFSEVIKNQRFGPLGNPR 622 + + +S+F+ R SHE+RTP+T + + F + + +F P R Sbjct: 366 QRAFERV--------------RSEFVLRASHELRTPVTGMHMAFGLLRERVKFPP--QAR 409 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + I + ++NDLL+ S+ +SG L P ++DE + A A+ K Sbjct: 410 ENDLLETIGEEMQRLTQLINDLLNFSRYQSGLQKLELAPCAIDELLERAQVRFSEQASVK 469 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 +I + + +PRI AD+ + ++ N+L NAI T SGG+I + + E VI+ V Sbjct: 470 QIELIKALEPPLPRIQADIAQLDRVLDNLLHNAIRHTGSGGRIRLHARRHA-ERVIISVE 528 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D G G+ + + +PF Q+ + G GLGL L K +V + G+ +FS P +GT Sbjct: 529 DNGEGIAYGQQGRIFEPFVQVGRKK----GGAGLGLALCKEIVQLHGGRMGVFSRPGQGT 584 Query: 803 LIEIIFPL 810 + P+ Sbjct: 585 QFYMALPV 592 >gi|88813512|ref|ZP_01128746.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Hpt [Nitrococcus mobilis Nb-231] gi|88789225|gb|EAR20358.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Hpt [Nitrococcus mobilis Nb-231] Length = 715 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 129/247 (52%), Gaps = 10/247 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I + K+ +L HAK+ A+ S K +FLA +SHEIRTP+ AIIG +E++ + Sbjct: 40 IQDLKKAGEELRHAKEAAQAASVAKGNFLANMSHEIRTPMNAIIGMTELVLDTDL----T 95 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 EY + +GN +L ++ND+LD SKIE+GK+ L L E + +A+ + A+ Sbjct: 96 DTQREYLAMVREAGNSLLSLLNDILDFSKIEAGKLELESHVFGLRERLGDAMKSLAFRAH 155 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NE 735 K I + +P +L D ++QI +N++ NAI FT + G++++ + S Sbjct: 156 GKGIELACHVHPEVPDALLGDASRLRQIVVNLVGNAIKFT-TQGEVVLDVAYESPTNNAA 214 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V DTG+G+ +LE F Q S + GTGLGL ++ +V G+ + Sbjct: 215 NLHFTVTDTGIGIPTDKLESIFDSFEQADMSTTRQFGGTGLGLAISSRLVKLMGGRIWAE 274 Query: 796 STPAKGT 802 S G+ Sbjct: 275 SELGCGS 281 >gi|260771912|ref|ZP_05880830.1| BarA sensory histidine kinase [Vibrio metschnikovii CIP 69.14] gi|260613204|gb|EEX38405.1| BarA sensory histidine kinase [Vibrio metschnikovii CIP 69.14] Length = 929 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 86/253 (33%), Positives = 136/253 (53%), Gaps = 12/253 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L N + +Y Sbjct: 276 ELDIAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LTNSQ-TDYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L I+ND+LD SK+E+GK+ L P E + E ++L A+EK + I Sbjct: 331 TIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQETLEEVVNLQATSAHEKGLEITL 390 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRD 743 IP ++ D ++Q+ N++ N+I FT G I IS S E+ VRD Sbjct: 391 KVDPKIPLGLVGDPLRIQQVLTNLVGNSIKFTERGN-IDISVEMRSQRDDMVELQFMVRD 449 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 450 TGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVGQMGGEISLTSRLHQGST 509 Query: 804 IEIIFPLYDTSHP 816 L T+ P Sbjct: 510 FWFTLRLPTTTMP 522 >gi|217974881|ref|YP_002359632.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223] gi|217500016|gb|ACK48209.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223] Length = 1238 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 130/250 (52%), Gaps = 8/250 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ K + L AK+ AE + +KS+FLA +SHEIRTP+ AIIG ++ + Sbjct: 694 THKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLT 753 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 Y+E A + S +L I+ND+LD SKIE+GK+ L P LD+ + A+ L Sbjct: 754 A-QQKDYLEKAGF---SAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNA 809 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 L A E+ + + IL D + Q+ +N+LSNA+ FT SG ++ + Sbjct: 810 LKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGEIELGCEDVGERD 869 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + L+ VRDTG+G+ + +K F Q S + GTGLGL ++K +V GK Sbjct: 870 HRITLKFWVRDTGIGIGKDQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKM 929 Query: 793 YIFSTPAKGT 802 + S G+ Sbjct: 930 QVQSELGVGS 939 >gi|145606054|ref|XP_370199.2| hypothetical protein MGG_06696 [Magnaporthe oryzae 70-15] gi|145013787|gb|EDJ98428.1| hypothetical protein MGG_06696 [Magnaporthe oryzae 70-15] Length = 2514 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 90/296 (30%), Positives = 154/296 (52%), Gaps = 39/296 (13%) Query: 541 LRIIIKKLPFSSCYSLTM--------HDISEWKQEKNKLSHA-----------------K 575 L++++ ++ S +LTM ++S + +K L HA Sbjct: 1845 LQLLVNQVGISYSNALTMKAVEKVSAENVSMVQMQKQALEHAIEAEKKAKDAEAKARQNV 1904 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 K+AE+ + KS FLA VSHE+RTPL +IG SE++++ L N +E A+ I S + Sbjct: 1905 KLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDS----LSNKEQLEMADSIRVSAD 1960 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE---KRILIRTSFAN 692 L+L ++ND+LD S++E+ KM L+ + +E V E + V Y+N+ +R ++ Sbjct: 1961 LLLTVINDILDFSRMEADKMKLYIIAFNPEEMVREVVRAVS-YSNQEKTRRNNVQIIKEI 2019 Query: 693 NIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVG 747 N+P++L D + Q+ N++ N++ FT G I + + E+ + V+DTG+G Sbjct: 2020 NLPQLLIYGDPIRLHQVLGNLIGNSLKFTDRGSITIGARVDSETEDSATLSFWVKDTGIG 2079 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM-GKFYIFSTPAKGT 802 + +L K +PF Q S + G+GLGL + K++V+ M GK + S GT Sbjct: 2080 IPPAQLAKLFQPFSQADPSTARKYGGSGLGLSICKSLVETMMKGKITLDSADGVGT 2135 >gi|75762015|ref|ZP_00741929.1| Phosphate regulon sensor protein phoR [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218899741|ref|YP_002448152.1| sensory box histidine kinase PhoR [Bacillus cereus G9842] gi|74490501|gb|EAO53803.1| Phosphate regulon sensor protein phoR [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218542354|gb|ACK94748.1| sensory box histidine kinase PhoR [Bacillus cereus G9842] Length = 587 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 101/376 (26%), Positives = 182/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ +L++ Sbjct: 240 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEE--------YLDRLYYE 291 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 +H TEI+ L +E+I + K K + L + I++ F Sbjct: 292 SFHH--TEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 344 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 345 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 388 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + + + Sbjct: 389 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHM 447 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+GG + + Sbjct: 448 VLDNKAGEKEISLQVNVLKR-ASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDK 506 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 507 YNAYI-KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTIT 565 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 566 VDSEVGEGTTFTVVLP 581 >gi|303248367|ref|ZP_07334628.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490275|gb|EFL50189.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 1178 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 126/246 (51%), Gaps = 9/246 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ + L AK+ A++ + KS FLA +SHEIRTP+ AI+G +EV R + Sbjct: 656 ERRRTLDALCAAKEEADRANEAKSRFLASMSHEIRTPMNAILGLTEVTLRTRL----SEE 711 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +Y + + S +LDI+ND+LD SKIE+ +M + L E + I + A +K Sbjct: 712 QRDYIDTVRDSARHLLDILNDILDFSKIEACQMTVDVVDYDLHELLRRVIKTLGGAARDK 771 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI--- 738 + + +PR + D V+Q+ +N++ NA+ FT +GG + + + Sbjct: 772 GLWLTLDIDVGVPRNVRGDPGKVRQVLVNLVGNAVKFTEAGGVTVRAALMMPGAGGLPLL 831 Query: 739 -LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V DTG+G+ E + F Q NS R GTGLGL +++ + G ++ ST Sbjct: 832 GVEVADTGIGIPAEMREAVFESFRQADNSTARRFGGTGLGLAISRELARLMGGDIHVRST 891 Query: 798 PAKGTL 803 P G+L Sbjct: 892 PGGGSL 897 >gi|17228673|ref|NP_485221.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130525|dbj|BAB73135.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 922 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 134/233 (57%), Gaps = 12/233 (5%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KN 612 YS T+ + + + +L AK A+ + KS+FLA +SHE+RTPL I+G+++++ ++ Sbjct: 426 YSRTLEE--KVRDRTQELETAKIAADVANQAKSEFLASMSHELRTPLNGILGYAQILERS 483 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + P +E N I + G+ +L ++ND+LD+SKIE+GK+ LH ++ + Sbjct: 484 ENIAPAA----LEGINIIHQCGSHLLILINDILDLSKIEAGKLELHNTDFDFSYFLTGVV 539 Query: 673 SLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIIS 728 + ++ A +K I ++P+ + AD + ++QI +N+L NAI FT +GG I + Sbjct: 540 EMCRIRALQKGISFHYLPDPDLPQAINADEKRLRQIIINLLGNAIKFTETGGVNFTIQVL 599 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 ++ +V DTGVGMT +L K PF Q+ + + + EGTGLGL ++ Sbjct: 600 EAGADFNKIRFQVEDTGVGMTPEQLTKIFLPFEQVGDKNK-QAEGTGLGLAIS 651 >gi|317483952|ref|ZP_07942889.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] gi|316924826|gb|EFV45975.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] Length = 800 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 86/272 (31%), Positives = 142/272 (52%), Gaps = 18/272 (6%) Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLS-------HAKKIAEKESSHKSDFLARVSHEI 596 +I+ P + + DI+E + + KL +A ++AE+ + KSDFL+R+SH+I Sbjct: 243 VIQGDPVYLFIYIDITDITEQRVLQKKLEERSELLRNALEMAERANRAKSDFLSRMSHDI 302 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTP+ AI+G + K P R + + ++ S +L ++ND+LD+SKIESGK Sbjct: 303 RTPMNAIMGMLSIAKESWDDP---DRVRDCLDKVENSARFLLALINDILDMSKIESGKAI 359 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNA 715 L + ++ A +K++ + ++ + D + QI +N+L NA Sbjct: 360 LKKKAFDFAAFTRNLAAMFYGQAEKKQVRFQVLLGRSLAEAYVGDELKLNQILINLLGNA 419 Query: 716 IHFTPSGGQIIISTTH--TSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 I FT GG +++S SN+ E++ V DTG+GM L+K +PF Q +SQQ Sbjct: 420 IKFTEPGGSVLLSVQEDKRSNKASELVFTVTDTGIGMEKSFLKKIFEPFEQ--DSQQRSN 477 Query: 772 E-GTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + G+GLGL +A+ G + STP KG+ Sbjct: 478 QGGSGLGLSIAEKYARMMNGGIEVDSTPGKGS 509 >gi|90412091|ref|ZP_01220098.1| putative sensor histidine kinase/response regulator [Photobacterium profundum 3TCK] gi|90327069|gb|EAS43448.1| putative sensor histidine kinase/response regulator [Photobacterium profundum 3TCK] Length = 897 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 135/251 (53%), Gaps = 8/251 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + R L + ++ +Y Sbjct: 245 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTR---LSSSQH-DYLLT 300 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S N +L I+ND+LD SK+E+GK+ L P E++ E + L+ A+EK + + Sbjct: 301 IEKSANNLLTIINDILDFSKLEAGKLLLENIPFDFTESLDEVMRLLAPSAHEKGLELTLK 360 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTG 745 + IP ++ D ++Q+ N++ NA+ FT G + + + N E+ VRDTG Sbjct: 361 VDHRIPAGLIGDPLRIQQVVTNLIGNAVKFTERGNIDVSVELKASKDENIELQFTVRDTG 420 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 421 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVTQMGGEISLTSRLHQGSTFW 480 Query: 806 IIFPLYDTSHP 816 + T P Sbjct: 481 FSLKMLKTDLP 491 >gi|126172786|ref|YP_001048935.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155] gi|125995991|gb|ABN60066.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155] Length = 1238 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 130/250 (52%), Gaps = 8/250 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ K + L AK+ AE + +KS+FLA +SHEIRTP+ AIIG ++ + Sbjct: 694 THKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLT 753 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 Y+E A + S +L I+ND+LD SKIE+GK+ L P LD+ + A+ L Sbjct: 754 A-QQKDYLEKAGF---SAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNA 809 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 L A E+ + + IL D + Q+ +N+LSNA+ FT SG ++ + Sbjct: 810 LKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGEIELGCEDVGERD 869 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + L+ VRDTG+G+ + +K F Q S + GTGLGL ++K +V GK Sbjct: 870 HRITLKFWVRDTGIGIGKDQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKM 929 Query: 793 YIFSTPAKGT 802 + S G+ Sbjct: 930 QVQSELGVGS 939 >gi|125973324|ref|YP_001037234.1| PAS/PAC sensor hybrid histidine kinase [Clostridium thermocellum ATCC 27405] gi|256005431|ref|ZP_05430394.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM 2360] gi|125713549|gb|ABN52041.1| PAS/PAC sensor hybrid histidine kinase [Clostridium thermocellum ATCC 27405] gi|255990571|gb|EEU00690.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM 2360] gi|316940443|gb|ADU74477.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM 1313] Length = 902 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 116/378 (30%), Positives = 187/378 (49%), Gaps = 30/378 (7%) Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-FT 498 TRI RK E ++ +L +E + I + + G I N +++ GY +++ K F Sbjct: 270 TRI--RKAEEKLQKLSQAVEQSPGIIVMADTRGNIEYVNPRFTEVTGYSFDEVKGKSLFF 327 Query: 499 VFLEQNTPSVMNHYLTEILS-LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 + LE+N + + S + R + + + + II + Y Sbjct: 328 MELEENGEEKCKDMIQAVFSGKEWRSEIRHKSKNNVVFWEYAYYSPIINSEGVVTNYLKV 387 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF------SEVIK 611 DI+E K L AK+ AE + KS+FLA +SHEIRTPL IIG +E+ Sbjct: 388 SEDITERKLMSENLFKAKEAAEAANRAKSEFLANMSHEIRTPLNGIIGMTNLTLQTELTD 447 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM---NLHFEPVSLDEAV 668 QR E N ++ L+L ++ND+LD SKIE+GKM N+ F+ +L E Sbjct: 448 EQR----------ENLNIVNSCAELLLRVINDILDYSKIEAGKMTLENVKFDFFNLLEKT 497 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QII 726 +A +VQ ANEK + + + IPRIL D ++Q+ N++SNA+ FT G +I Sbjct: 498 YKA-HIVQ--ANEKGLRLSYTVQKGIPRILVGDPGRLQQVLNNLISNAVKFTDIGEVRID 554 Query: 727 ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + ++ V L+ V DTG+G+ ++ K F Q+ +S + GTGLGL ++K + Sbjct: 555 VDIIEKRDDSVKLKFTVSDTGIGIDGDKMNMLFKSFSQVDSSITRKYGGTGLGLAISKQL 614 Query: 785 VDANMGKFYIFSTPAKGT 802 V+ G+ ++ S KG+ Sbjct: 615 VEMMGGEIWVESQKGKGS 632 >gi|260223358|emb|CBA33843.1| hypothetical protein Csp_B21070 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 538 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 81/245 (33%), Positives = 131/245 (53%), Gaps = 8/245 (3%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++L A AE + KS FLA +SHE+RTP ++G ++++ PL + +Y Sbjct: 116 HELREAHFRAEAANRGKSQFLANMSHELRTPFNGMLGMMSLLEST---PLTTAQT-DYIK 171 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 S N +L ++ND+LD+S +ESGKM L+ EPV L ++E +L+ A EK++ Sbjct: 172 TAKGSANHLLTLLNDILDVSALESGKMTLNPEPVQLPALLNEVNALMHPLAVEKQLKFSI 231 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ--IIISTTHT-SNEEVILRVRDT 744 +P +LAD +KQI N+++NA+ FT GG I+S T N + V DT Sbjct: 232 VVQAELPAWVLADATRLKQILFNLVNNALKFTDHGGVTLTIVSRPRTDGNTGLAFLVEDT 291 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+GM ++ L + + F Q+ + GTGLGL +++ + G + ST KG++ Sbjct: 292 GIGMDDHVLSRLFQRFYQVDGGLARKFGGTGLGLEISQTLARMMGGAIEVESTLGKGSVF 351 Query: 805 EIIFP 809 + P Sbjct: 352 TLHLP 356 >gi|153002294|ref|YP_001367975.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185] gi|151366912|gb|ABS09912.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185] Length = 1238 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 130/250 (52%), Gaps = 8/250 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ K + L AK+ AE + +KS+FLA +SHEIRTP+ AIIG ++ + Sbjct: 694 THKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLT 753 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 Y+E A + S +L I+ND+LD SKIE+GK+ L P LD+ + A+ L Sbjct: 754 A-QQKDYLEKAGF---SAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNA 809 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 L A E+ + + IL D + Q+ +N+LSNA+ FT SG ++ + Sbjct: 810 LKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGEIELGCEDVGERD 869 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + L+ VRDTG+G+ + +K F Q S + GTGLGL ++K +V GK Sbjct: 870 HRITLKFWVRDTGIGIGKDQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKM 929 Query: 793 YIFSTPAKGT 802 + S G+ Sbjct: 930 QVQSELGVGS 939 >gi|197119422|ref|YP_002139849.1| PAS/GAF domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197088782|gb|ACH40053.1| sensor histidine kinase response regulator, PAS and GAF domain-containing protein [Geobacter bemidjiensis Bem] Length = 947 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 84/248 (33%), Positives = 133/248 (53%), Gaps = 15/248 (6%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E K + L AK+ AE S KS FLA +SHE+RTP+T ++G ++ L +P Sbjct: 549 ERKTTEENLQQAKQAAEAASRTKSQFLANMSHELRTPMTGVLGMLDL-------ALQSPS 601 Query: 623 YIEYANYID---RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +E ++YI RSG +L I+ND+LD+SK+E+GK +L +P SL V+EA+ + A Sbjct: 602 DLERSDYIRTAYRSGRSLLQILNDILDLSKVEAGKYSLDLKPFSLKSCVAEAVDIAAPEA 661 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNE 735 K I + A ++P R+ D ++Q+ N++ NA+ FT G Q+ ++ E Sbjct: 662 KRKGIELELDLAQDLPARVAGDQVRLRQVLTNLVGNAVKFTERGRVTVQVEVADKTPEGE 721 Query: 736 EVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 ++ RV DTG+G+ + + F QI +S GTGLGL ++K +V G+ Sbjct: 722 SLLRFRVSDTGIGIPQDKRHLLFQAFSQIDDSNTRNYGGTGLGLAISKEIVQRMGGEIGF 781 Query: 795 FSTPAKGT 802 S G+ Sbjct: 782 ESGEGVGS 789 >gi|114704750|ref|ZP_01437658.1| putative sensor histidine kinase protein [Fulvimarina pelagi HTCC2506] gi|114539535|gb|EAU42655.1| putative sensor histidine kinase protein [Fulvimarina pelagi HTCC2506] Length = 822 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 104/407 (25%), Positives = 185/407 (45%), Gaps = 26/407 (6%) Query: 429 PQNGIEP--EDVDTRINKRKMEIEVMQLCSILEATSD----GIAIINREGIILSTNRAVS 482 PQ G ED+ R+ K+E+E+ + + T D G+A+ +G + +N Sbjct: 399 PQGGATFVFEDITERL---KLEMEIKTVARLQRETLDYLGEGVAVFGGDGRLQLSNPIFG 455 Query: 483 KLFGYPVEDILRKP--------FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 ++F + + KP V +E T +L + + G + Sbjct: 456 EMFEFDAAFLKSKPRIQTFEDTAGVRIEDGTFDGTGWKGLSVLVTSIDENGRNSENGEVR 515 Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 ++L LP + LT D+S+ + + L E+ + K DF++ +S+ Sbjct: 516 LSNGMTLAYKAVPLPAAQTM-LTFSDVSDARAAERMLREKNDALEEANRIKYDFVSFMSY 574 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 E+R+PLT +IGFS+++ G L N R +Y ++I S +L +VND LD++ I++G Sbjct: 575 ELRSPLTTVIGFSQLLAEPELGTL-NERQSDYLDHITSSTRSLLAMVNDTLDLATIDAGI 633 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714 M L V + V A+ VQ +E ++ + + + AD + QI N+LSN Sbjct: 634 MELEVSHVDIAARVENAVEGVQERLHENQLRVEVDLTKSGDVLEADGARLTQILYNLLSN 693 Query: 715 AIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 A +F P G +I + + + EV V D G G+ ++++ + F N++ R G Sbjct: 694 ATNFAPQGSEIELKAWKSETGSEVCFAVTDRGPGIPADQVDRIFERFET--NAEGGRSSG 751 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY----DTSHP 816 GLGL + K++V+ + G+ + + GT + P D HP Sbjct: 752 PGLGLSIVKSLVELHGGEIRVETPNGGGTRVICALPASQDRPDPEHP 798 >gi|326424287|ref|NP_762701.2| CheY-like receiver [Vibrio vulnificus CMCP6] gi|319999673|gb|AAO07691.2| FOG: CheY-like receiver [Vibrio vulnificus CMCP6] Length = 881 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 88/258 (34%), Positives = 136/258 (52%), Gaps = 15/258 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I E +Q+ ++ HAK+ A + KS FLA +SHEIRTPL IIG +E++ + Sbjct: 350 IDEKQQQMVEIIHAKESAISANRAKSVFLANMSHEIRTPLNGIIGMTEILSQSEL----S 405 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + E ID S +L ++ND+LD+SKIESG +N+ + + E V +A++L Q A Sbjct: 406 SQQKEILGDIDTSSQSLLILLNDILDLSKIESGNLNISLQEADIRETVYQAMTLFQSKAT 465 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST-------THT 732 K I + + +IP +++AD +KQ+ N++ NAI FT G IST H Sbjct: 466 SKNIELHITMGEDIPAKVMADDHRIKQVLTNLVGNAIKFTKEG---YISTFVNYQADEHD 522 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + +V DTG+G+ +LE +PF Q +S + GTGLGL + + +V G+ Sbjct: 523 HQGYLTFKVTDTGIGIDQAKLETIFEPFTQEDDSITRQFGGTGLGLAICRQLVAMMGGEL 582 Query: 793 YIFSTPAKGTLIEIIFPL 810 ST G+ P+ Sbjct: 583 TATSTKGLGSCFSFTIPV 600 >gi|67922197|ref|ZP_00515711.1| PAS [Crocosphaera watsonii WH 8501] gi|67855900|gb|EAM51145.1| PAS [Crocosphaera watsonii WH 8501] Length = 796 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 81/254 (31%), Positives = 130/254 (51%), Gaps = 14/254 (5%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q+ +L K AE + K++FLA +SHEIRTPL AI+GFS+++ + + +P + Sbjct: 504 QQNIQLQEKSKQAEAANKAKTNFLANMSHEIRTPLNAILGFSDLLSQK----IIDPENVN 559 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + I S N +L ++ND+ ++ ++ESG + + E V+L E + + AN+K I Sbjct: 560 HLQSIIFSSNNLLALINDIFELIRLESGIVKVESETVNLTEIIRQIYYKFSEKANQKNIK 619 Query: 686 IRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIIS---------TTHTSNE 735 + + NIP IL D + QI N+LSNAI FT G + T N Sbjct: 620 LIVNLNKNIPDILEFDKLKLYQIINNLLSNAIKFTKLGSVKVDVWANYFQSDLKTRQENC 679 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +++R++DTG+G++ + + F Q+ EG GLGL L + M+ G + Sbjct: 680 SIVIRIKDTGIGISQEKQKIIFDRFTQVSQETNREYEGIGLGLTLTQKMIQLLEGNLKLE 739 Query: 796 STPAKGTLIEIIFP 809 S KGT I + P Sbjct: 740 SELEKGTTITVTLP 753 >gi|229163580|ref|ZP_04291529.1| hypothetical protein bcere0009_43460 [Bacillus cereus R309803] gi|228619830|gb|EEK76707.1| hypothetical protein bcere0009_43460 [Bacillus cereus R309803] Length = 571 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 101/376 (26%), Positives = 182/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ L + + Sbjct: 224 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEEYLDRLYY--------E 275 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 +H TEI+ L +E+I + K K + L + I++ F Sbjct: 276 SFHH--TEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 328 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 329 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 372 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + + + Sbjct: 373 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHM 431 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + + ++ D +KQI +N+++NAI +TP+GG + + Sbjct: 432 VLDNKAGEKEISLQVNVLKRVS-VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDK 490 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 491 YNAYI-KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 549 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 550 VDSEVGEGTTFTVVLP 565 >gi|90023292|ref|YP_529119.1| Signal transduction histidine kinase-like protein [Saccharophagus degradans 2-40] gi|89952892|gb|ABD82907.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans 2-40] Length = 765 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 132/244 (54%), Gaps = 11/244 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+EK + + AE + KS F+A +SHEIRTP+ +IG E++++ + R+ Sbjct: 233 KEEKIETRRLVQEAEAANRAKSQFIATMSHEIRTPMNGVIGMVEMLRDTTLD--DSQRH- 289 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 Y I+RSG+ +++I+ND+LD SKIE+GKM+L L+E + + + + +++ I Sbjct: 290 -YLGIIERSGDSLMNIINDILDYSKIEAGKMSLEHMQFDLEELLEDCVQMFSASTDKRNI 348 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---- 739 + S + N P+ ++ D +KQ+ +N++ NA FT S G I + + + L Sbjct: 349 ELICSISPNTPKQLMGDPTRLKQVLVNLIGNAFKFT-SEGHIYVEARQVNASDADLPMIH 407 Query: 740 -RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V D+G+G+ + + EK F Q S + GTGLGL + K + + G+ ++S Sbjct: 408 FSVEDSGIGIESNQQEKLFDAFCQADGSTTRKFGGTGLGLTICKQLAEMMGGEIGVYSRE 467 Query: 799 AKGT 802 G+ Sbjct: 468 KAGS 471 >gi|116624414|ref|YP_826570.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116227576|gb|ABJ86285.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 1349 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 79/259 (30%), Positives = 131/259 (50%), Gaps = 23/259 (8%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF------SEVIKNQRFGPLGNPRY 623 +L+ AK+ AE S HK++FLA +SHEIRTP+ +IG +E+ QR Sbjct: 769 ELNRAKEQAEAASRHKTEFLANMSHEIRTPMNGVIGMTGLLLDTELTTEQR--------- 819 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 +YA + RSG +L ++ND+LD SK+E+GK+ + L + E ++ ++ Sbjct: 820 -DYAGTVRRSGESLLTLINDILDFSKVEAGKLAIEASAFDLRSTIEEVDEMLAPKIENRK 878 Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--VILR 740 + + + PR + D ++Q+ N++ NAI FT G I+I S +E ++R Sbjct: 879 LDLVLQYPVGAPRHFVGDAGRIRQVVTNLVGNAIKFTGE-GSIVIEVVCESQDEARAVMR 937 Query: 741 V--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG G+ + ++ + F Q+ S + GTGLGL ++K +V G + S Sbjct: 938 VAIHDTGPGIPSEKIGSLFEKFSQLDGSTTRKYGGTGLGLAISKQLVSLMGGSMAVSSRL 997 Query: 799 AKGTLIEIIFPL-YDTSHP 816 +G+ PL D + P Sbjct: 998 GEGSTFSFTLPLPLDANSP 1016 >gi|307153463|ref|YP_003888847.1| ATP-binding region ATPase domain-containing protein [Cyanothece sp. PCC 7822] gi|306983691|gb|ADN15572.1| ATP-binding region ATPase domain protein [Cyanothece sp. PCC 7822] Length = 2003 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 135/245 (55%), Gaps = 7/245 (2%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + +QE + A++IAE + KS+FLA +SHE+RTPL I+G++++ K + Sbjct: 1527 QLEQEVRERQRAEEIAEAANRAKSEFLANMSHELRTPLNGILGYAQICKKDKNLNEQQKN 1586 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 IE I + G +L ++ND+LDISKIE+ KM L + + + + Q+ A +K Sbjct: 1587 RIE---IIHQCGEHLLTLINDILDISKIEARKMELCPTDFYFGDFLRGILEICQIKAEQK 1643 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 I + +++P+I+ D + ++QI +N+L+NA+ FT G I +V +V Sbjct: 1644 GISLIFQPLSSLPKIVQVDEKRLRQILINLLNNAVKFTEKGS--ITFKVSYQKGKVNFQV 1701 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ +LE+ PF Q+ + + EGTGLGL +++ + G + S+ KG Sbjct: 1702 EDTGIGIAPNQLEEIFLPFQQVGEYSR-KTEGTGLGLSISRQLAQMMGGTITVKSSLGKG 1760 Query: 802 TLIEI 806 ++ + Sbjct: 1761 SIFSL 1765 >gi|291541287|emb|CBL14398.1| EDD domain protein, DegV family [Roseburia intestinalis XB6B4] Length = 891 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 82/266 (30%), Positives = 144/266 (54%), Gaps = 12/266 (4%) Query: 550 FSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 F +C + +SE+++++N+ A+ +A + +S FLA +SHEIRTP+ IIG +E Sbjct: 172 FLTCAFMFIQITLSEYQRKENEKQQAELVAAMNT--QSRFLANMSHEIRTPINTIIGLNE 229 Query: 609 V-IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 + ++ + + IE AN I + ++L ++ND+LD+SKIE+GKM + E Sbjct: 230 MTLREENL----SDDIIENANNIQSASKMLLSLINDILDLSKIEAGKMEVVPARYETGEL 285 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QI 725 SE ++ + A+EK + + + +P +L D +KQ+ NILSNAI +T G + Sbjct: 286 FSEIVNTTWIRAHEKNLEFCVNVSEKLPSMLYGDEMRIKQVLTNILSNAIKYTQKGSVTL 345 Query: 726 IISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + + T +E++L+ V DTG+G+ +++ F ++ EGTGLGL + Sbjct: 346 FVESEQTGADEILLKMAVIDTGMGIRQDDMKYLFDSFKRVNEGSTKGIEGTGLGLSICSQ 405 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809 +V+ G+ + S KG+ I P Sbjct: 406 LVNLMGGQITVDSIYQKGSTFTITIP 431 >gi|218782287|ref|YP_002433605.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218763671|gb|ACL06137.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1349 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 99/356 (27%), Positives = 173/356 (48%), Gaps = 24/356 (6%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 + +AT + I +I EG+ L N+A S +FGY +++++ + +N I Sbjct: 578 LADATHEAI-LIAEEGVCLVANQAASDMFGYSLQELVGDSCLKLFAGEGRTDLN-----I 631 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF--SSCYSLTMHDISEWKQEKNKLSHA 574 L+ D+ K TL K+ + + + + L + DI+ K+ + L +A Sbjct: 632 LA-DMYAGPPKETLALRKDGSSFPVEVKSNAMQYRDKEVTVLAIQDITYKKRSEEALRYA 690 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 + + K +FLA +SHEIRTP+ IIG + ++++ PL N + + I S Sbjct: 691 A-VERAANKAKGEFLANMSHEIRTPMNGIIGMASLLEDT---PLNNEQK-DLLQTISSSA 745 Query: 635 NLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 +L I+ND+LD SKIE+GK++L F+P S V + +L+ A +K + I + + Sbjct: 746 ESLLRIINDILDYSKIEAGKLDLERIEFDPRS---TVEDVTALMAKTAEQKGLQITSLIS 802 Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTGVG 747 + +P +++ D ++Q+ +N+ NAI FT G I+ + + + DTG+G Sbjct: 803 HKVPSKVVGDPGRLRQVLMNLTGNAIKFTSKGEVIVRALVDEEDRGGATLRFEIIDTGIG 862 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 + L + F Q S R GTGLGL ++K + GK S +G+L Sbjct: 863 VPQSRLSSLYESFTQADPSTTRRYGGTGLGLTISKQLCRLMGGKIGAESKEGEGSL 918 >gi|46199084|ref|YP_004751.1| sensory transduction histidine kinase [Thermus thermophilus HB27] gi|46196708|gb|AAS81124.1| sensory transduction histidine kinase [Thermus thermophilus HB27] Length = 963 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 80/235 (34%), Positives = 127/235 (54%), Gaps = 9/235 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +FLA VSHE+RTPL AI+G +E+++ + PL P E I S + ++V++L Sbjct: 737 KGEFLAAVSHELRTPLAAILGLAELLRQE---PL-PPEAQESVELILESAFRLKNMVDNL 792 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD S++E+G+ + PV L + E Q A + R +P + D + Sbjct: 793 LDTSRLEAGRFEVSRRPVHLKPLLLELARSFQGVARLSGVEFRVEV-EELPLMEVDPDRI 851 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 Q+ N+L+NA FTP GG + + EEV + V+DTG G+ E+ + + + + Sbjct: 852 VQVVGNLLANAFKFTPPGGSVRL-WAGVRGEEVWVEVQDTGPGIPKEEIPRLFQRYARAK 910 Query: 765 NSQQIRG-EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 + +RG GTGLGL ++K +V+A+ G+ + S KG+L +I PLY HP D Sbjct: 911 HPG-VRGVAGTGLGLFISKHIVEAHGGRIEVESEEGKGSLFRVILPLYG-PHPGD 963 >gi|224540392|ref|ZP_03680931.1| hypothetical protein BACCELL_05305 [Bacteroides cellulosilyticus DSM 14838] gi|224517994|gb|EEF87099.1| hypothetical protein BACCELL_05305 [Bacteroides cellulosilyticus DSM 14838] Length = 1421 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 81/254 (31%), Positives = 136/254 (53%), Gaps = 15/254 (5%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q+K +LS + ++ + K F ++HE RTP+T IIG E + NP+ IE Sbjct: 885 QQKAQLSRMARKVQELTLDKIAFFTNITHEFRTPITLIIGPIERALKLSY----NPQVIE 940 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 N+++R+ +L +VN L+D K+ESGK+N+ + ++ ++ +++A E+ I Sbjct: 941 QLNFVERNSKYLLSLVNQLMDFRKVESGKLNIVKTKGNFLNFINSLLTPFEVFAGERNIA 1000 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI--IIST--THTSNEEVILRV 741 I+ F P I D ++ ++ N+LSNAI FTP G+I I+T T S E + L V Sbjct: 1001 IKHFFHMKDPEIRYDEEAMHKVITNLLSNAIKFTPDNGEISVYIATLPTKESKEVLYLCV 1060 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIR----GE-GTGLGLPLAKAMVDANMGKFYIFS 796 D+G G+ ++E+ F Q + +Q++ G+ GTG+GL L K +V + G + + Sbjct: 1061 SDSGTGIPEQDIEQIFNRFYQ--SKKQVKYPVYGQTGTGIGLYLCKRIVLMHDGDISVRN 1118 Query: 797 TPAKGTLIEIIFPL 810 P G I+ PL Sbjct: 1119 NPGSGCSFRILLPL 1132 >gi|254443048|ref|ZP_05056524.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] gi|198257356|gb|EDY81664.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] Length = 1320 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 130/241 (53%), Gaps = 5/241 (2%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + ++L + K A+K KS FLA +SHEIRTP+ ++G ++ + + L N + Sbjct: 792 ELDETNDELRASVKEAKKAGQAKSQFLANMSHEIRTPMNGVMGMCTLLNDTQ---LSNTQ 848 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +Y + I S +L I+ND+LD SKIE+GK+ + P L + V + + L + +K Sbjct: 849 R-DYVSTIRSSSETLLTIINDILDFSKIEAGKLQIETIPFDLVDLVEDVLDLFSQHLEQK 907 Query: 683 RI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ L+ A+ + + D ++QI +N++ NAI FT SG I + +E+ + V Sbjct: 908 KLDLVHHIAASVSTQRIGDPTRIRQILVNLVGNAIKFTTSGDIYISIESGDDPDEITIEV 967 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RD+G+G+ +L +PF Q S + GTGLGL ++K + + G+ + S G Sbjct: 968 RDSGIGIDQRKLNDLFQPFSQEDESITRKYGGTGLGLSISKMLAEIMHGRLWAESEIGVG 1027 Query: 802 T 802 + Sbjct: 1028 S 1028 >gi|16330584|ref|NP_441312.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] gi|1653075|dbj|BAA17992.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] Length = 1261 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 131/249 (52%), Gaps = 8/249 (3%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DI+ K + ++ AK++AE+ S K+DFLA +SHEIRTP+ A+IG + + Sbjct: 500 LADITPIKAAEAEMKRAKELAEEASRIKADFLANMSHEIRTPMNAVIGMTHLALKTDL-- 557 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 PR EY + I SG +L ++ND+LD SKIE+GK+ + LD+ + +L+ Sbjct: 558 --TPRQREYLHKIRFSGQHLLGVINDILDFSKIEAGKLPMESIDFDLDKVLDNVATLISE 615 Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE 735 A K + + N+PR + D + QI +N +NA+ FT G I++ ++ Sbjct: 616 KATNKGLELLFDIDRNLPRHFIGDPLRLGQILINYANNAVKFTEQGDITIVVRLQEYRDQ 675 Query: 736 EVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +V+ L V+DTG+G+ + F Q +S GTGLGL + K + + G+ Sbjct: 676 DVVLYLAVKDTGIGIKPEHIANLFNSFQQADSSTTRNFGGTGLGLAICKRIAELMGGEVG 735 Query: 794 IFSTPAKGT 802 + S +G+ Sbjct: 736 VESEYGQGS 744 >gi|158312900|ref|YP_001505408.1| histidine kinase [Frankia sp. EAN1pec] gi|158108305|gb|ABW10502.1| histidine kinase [Frankia sp. EAN1pec] Length = 489 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 135/247 (54%), Gaps = 8/247 (3%) Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 + A++ AE ES K +F+AR+ HE+RTPL A++GF+++++ + PL P E I Sbjct: 111 ARARRAAETESRSKDEFVARLGHELRTPLNAMLGFAQLLELE---PL-TPDLHEDVERII 166 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 G + +++D+LD++++ +G+ +++ PV++ + V + LV+ A + IR Sbjct: 167 TGGRHMQALIDDVLDLARLRAGRGDINKGPVNVLDIVQGVVELVEPLAERRG--IRRIIH 224 Query: 692 NNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 P I AD R + Q+ LN++ NA+ + GG + + + + + V D G+G++ Sbjct: 225 PARPLIADADRRRLWQVLLNLVGNALKYGREGGNVRVGVVPVTGSRIRIEVEDDGIGLSP 284 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 L + +PF ++ ++ EG+GLGL L+ A+V A G + S P G++ ++ Sbjct: 285 SALSRLFRPFERL-GAEDTGVEGSGLGLALSHALVTAMGGVLTVASRPGVGSVFAVVLDA 343 Query: 811 YDTSHPH 817 D + H Sbjct: 344 VDVRYDH 350 >gi|170741630|ref|YP_001770285.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168195904|gb|ACA17851.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 1362 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 128/236 (54%), Gaps = 7/236 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHEIRTPL I+G+++++ R +E+ I +G +L +VND+ Sbjct: 890 KSEFLAMMSHEIRTPLHGILGYADLLTECGLLAAEQQRQVEH---IRTAGRALLAVVNDV 946 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703 LD S IE+G++ L P +L + E +++V+ A K + + +P ++ D Sbjct: 947 LDFSAIEAGRVALDPRPFALRALIGEVVAIVREPAERKGLTLAAEIDPAVPDWLVGDQGR 1006 Query: 704 VKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPF 760 V+Q+ LN+ +NA F +G + ++ + E + +R VRDTGVG+ +L + + F Sbjct: 1007 VRQVLLNLAANAQKFCHAGSVTLSVAPDRIAAEALTVRFAVRDTGVGIEEDKLGRLFQRF 1066 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 Q S + GTGLGL ++KA+V+A G+ + S P +G+ L + P Sbjct: 1067 SQADGSIRREFGGTGLGLAISKALVEAMGGRIGVESVPGRGSTFWFTLRLLRAAPP 1122 >gi|167567131|ref|ZP_02360047.1| probable two-component sensor/regulator [Burkholderia oklahomensis EO147] Length = 923 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 133/251 (52%), Gaps = 13/251 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 S+ ++ +L+ AK+IAE S KS+ +A +SHE+RTPL I+G ++ Sbjct: 378 SKVRERTRELAEAKRIAESASHRKSEHIASISHELRTPLNGIVGALALLNRSAL----QA 433 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + +S + +L IVN++LD S+IE+G++ L E L + +A+ + + A E Sbjct: 434 EQRDLVRVAQQSSSYLLGIVNNVLDFSRIEAGQLELASEETDLLALLDQAMLTIHIRAQE 493 Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K + +RT A ++P R+ D V+QI +N+L NA+ FT G I T + + Sbjct: 494 KSLNLRTFVAADVPRRVWLDGLRVRQILINLLGNAVKFTEHGH--IHLTVERRADMLAFV 551 Query: 741 VRDTGVGM-TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG G+ +Y+L+ KPF Q+ + G GLGLP+A + + G+ + S Sbjct: 552 VEDTGKGIPDDYQLD-IFKPFVQV----RAHDSGNGLGLPIASRLANLMNGEILLDSRLG 606 Query: 800 KGTLIEIIFPL 810 KGT ++ PL Sbjct: 607 KGTRFTVLLPL 617 >gi|167566984|ref|ZP_02359900.1| sensory box histidine kinase/response regulator [Burkholderia oklahomensis EO147] Length = 749 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 98/367 (26%), Positives = 170/367 (46%), Gaps = 23/367 (6%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 ++EA+ D I + + I S N A ++FGY + + + + H L Sbjct: 258 LVEASPDAIVGVGADRRITSWNPAARRMFGYDEQAARGRDVAMLIAPRWRR--RHPLPAS 315 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCY--SLTMHDISEWKQEKNK 570 LS D+ + +E + + +++ LR + P +C SLT+ D E ++ + + Sbjct: 316 LS-DVYEPIENVDVLCARQDGS-RLRATLSASPVFDDRDACVALSLTLRDTGEQRRRERR 373 Query: 571 LSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 H A++ A+ + K + LA VSHE+RTPL I G+ EV++N P G Sbjct: 374 THHSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRN----PAGGALQ 429 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + + IDRS + +V D+LD S + +GK+ L PV L V++ + A + Sbjct: 430 QQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVNDVTGALGTAAQAEG 489 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + + A + D ++Q+ N+LSNA FTP GG++ +S T + ++ V D Sbjct: 490 LDLTVDCALETCIVSGDGERLRQVLSNLLSNAFKFTPRGGRVTVSLMRTDSHATLV-VAD 548 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK-GT 802 TG G++ L + F + S G GLGL + + + + + GK + S + GT Sbjct: 549 TGQGISPEFLPHVFEAFRRADGSPASSRRGLGLGLSIVRHIAELHGGKVEVASAGKRLGT 608 Query: 803 LIEIIFP 809 + P Sbjct: 609 TFTVTLP 615 >gi|239906733|ref|YP_002953474.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239796599|dbj|BAH75588.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 572 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 124/237 (52%), Gaps = 14/237 (5%) Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQ--RFGP---LGNPRYIEYANYIDRSGNLVLD- 639 SDFL+ VSHEIRTPLT+++GF+ +IK + R P + P+ A I + ++++ Sbjct: 337 SDFLSMVSHEIRTPLTSVLGFAVLIKKRLARLLPASAVDTPKKRLQAEQIQDNLDIIVAE 396 Query: 640 ------IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 ++ND+LD++K+E+GKM EPV E V ++ I++ T Sbjct: 397 GERLKHLINDVLDLAKLEAGKMAFKSEPVDPAEVVRHVMNASAGLLQNTNIVLDTRIEGR 456 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 +P + D + Q+ +N++SNAI FT G + +++ V DTG+G+ E Sbjct: 457 LPLVRGDRDRLIQVLVNLVSNAIKFTDQG--YVACRARAQGNTIVIEVSDTGIGIPESEQ 514 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 K + F QI + + +GTGLGL + K +V+++ G+ + S P G+ P+ Sbjct: 515 GKVFEKFNQIGGTLTNKPKGTGLGLTICKHIVESHGGRIFCVSRPGAGSTFTFTLPI 571 >gi|71909161|ref|YP_286748.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71848782|gb|AAZ48278.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 982 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 110/375 (29%), Positives = 175/375 (46%), Gaps = 36/375 (9%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--------------- 500 ++++ D I + + +G+ LS NR + FG ++I+ K F Sbjct: 459 TLIDTLPDLIWLKDADGVYLSCNRRFEQFFGTSEQEIVGKTDYDFVSKELADFFREHDRK 518 Query: 501 -LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYSLTM 558 +E++ PS+ N S R+ LE + KL+ + I + L + Sbjct: 519 AMEKDGPSI-NEEEVPFASDGHRELLETTKMSMRDASGKLIGVLGIGHDITAKRRSELEL 577 Query: 559 HDISEWKQE-----KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + QE L AK++AE S KS FLA +SHEIRTP+ AI G +++N Sbjct: 578 DGHRQHLQELVDSQTADLMVAKEVAETASVAKSAFLANMSHEIRTPMNAITGMVHILRNM 637 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 P P+ E + I+ + +L I+ND+LD+SKIE+GK L P+S+ S Sbjct: 638 GVTP---PQS-EKLDIIENASKHLLGIINDVLDLSKIEAGKFTLEDVPLSIRALFGNVAS 693 Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG-----GQIII 727 ++ EK +++ A+++PR L D ++Q LN NA+ FT G +I+ Sbjct: 694 MLGPKVREKGLVLNIE-ADDVPRNLRGDPTRLQQALLNFAGNALKFTERGHITLRARILE 752 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 T ++N + + V DTGVG+ L K F Q NS + GTGLGL + K + + Sbjct: 753 ETELSAN--LCIEVEDTGVGIAPEALPKLFGAFEQADNSMTRKYGGTGLGLAITKKIAEV 810 Query: 788 NMGKFYIFSTPAKGT 802 G + STP G+ Sbjct: 811 MGGTAGVNSTPGGGS 825 >gi|317153381|ref|YP_004121429.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316943632|gb|ADU62683.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 867 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 76/260 (29%), Positives = 132/260 (50%), Gaps = 16/260 (6%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K + L AK AE + K++FL +SHE+RTPL I+G ++ + R P Sbjct: 471 DITERKATQQALMEAKHSAEAANQSKTEFLTNISHELRTPLNGILGMLQLTRETRLKP-- 528 Query: 620 NPRYIEYANYID---RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 E A YID S ++L+++ND+L+I++IE+G++ L P S +E + + Sbjct: 529 -----EQAEYIDTAISSSKVLLNVINDILNIAQIEAGRLTLLDAPFSTNEVLETIYRFFR 583 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG-----GQIIISTT 730 K + + P+ L D ++QI N+L N++ FT G I+ T Sbjct: 584 HSTEAKGVELTMDMEPGFPKTLVGDEVRIRQILFNLLGNSVKFTDQGHISVHASILPVTP 643 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 V+L ++DTG+G+ + +++ + F Q+ + + +GTGLGL + +++V + G Sbjct: 644 RPGRVTVLLVIKDTGIGIPSDKIDYVFESFTQVDGTYTRQYQGTGLGLGIVRSLVWSMNG 703 Query: 791 KFYIFSTPAKGTLIEIIFPL 810 + S GT I + L Sbjct: 704 TIAVDSETGMGTTIYVTLQL 723 >gi|90408287|ref|ZP_01216452.1| putative sensor histidine kinase/response regulator [Psychromonas sp. CNPT3] gi|90310588|gb|EAS38708.1| putative sensor histidine kinase/response regulator [Psychromonas sp. CNPT3] Length = 919 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 129/233 (55%), Gaps = 10/233 (4%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 +K A++ + KS+FLA +SHE+RTPL +IGF+ + + ++Y I+RS Sbjct: 281 RKKAQQAAKVKSEFLANMSHELRTPLNGVIGFARQLLKTKM----TSSQVDYLETIERSA 336 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L I+ND+LD SKIE+GK+ L P L + + E + L+ A+EK + + N+ Sbjct: 337 ANLLHIINDILDFSKIEAGKLMLEHIPFDLRDCIDETMYLLAPSAHEKGLELSVLIDANV 396 Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR----DTGVGMT 749 + +L D ++QI N++ NAI FT G I + ++++ ++ ++ DTG+G++ Sbjct: 397 TQSVLGDAMRLQQILTNLIGNAIKFTQQ-GDIEVKIQQVADKKGLITLKISISDTGIGIS 455 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + + FGQ +S + GTGLGL + + ++ G+ + +S +G+ Sbjct: 456 KQQQAQLFCAFGQADSSITRQYGGTGLGLVITQKLIQKMQGEIHFYSVEDQGS 508 >gi|89070245|ref|ZP_01157569.1| PAS/PAC Sensor Hybrid Histidine Kinase [Oceanicola granulosus HTCC2516] gi|89044165|gb|EAR50323.1| PAS/PAC Sensor Hybrid Histidine Kinase [Oceanicola granulosus HTCC2516] Length = 1053 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 103/370 (27%), Positives = 173/370 (46%), Gaps = 44/370 (11%) Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 G+AI + +G L N A+ KL GY ++L F L ++ + + + E R Sbjct: 593 GMAIFDGQGRFLGLNEAMVKLTGYSEAELLEMRFGDLLSKDDLAQIFDTVVETHGDGAR- 651 Query: 524 TLEKITLGSTKEEKL-----------LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 G T E +L LS+ S Y + + DISE ++E +L Sbjct: 652 -------GYTGEHQLSHRNGGHVWALLSVAWTFDADRGSDLYIVQLQDISE-RREIERL- 702 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG--PLGNPRYIEYANY- 629 KS+F+A VSHE+RTPLT++ G +++ P + R ++ A Sbjct: 703 ------------KSEFVATVSHELRTPLTSVKGALDLVVGAMADKLPKSSLRLLDIAQSN 750 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 DR ++ +VND+LD+ KI +G+++ H +P S +E + ++ + A ++ + + Sbjct: 751 TDR----LIYLVNDILDLEKISAGQIDFHIQPESANELLDASVKQTRPIAVQQDVHLVWR 806 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 +LAD + Q+ LN++SNA F+ +GG++ + EV+ V+D GVG++ Sbjct: 807 PQEPDRMVLADAGRLNQVLLNLISNACKFSHAGGRVEV-WFEVRGAEVMFFVKDEGVGIS 865 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 KPF Q+ +S GTGLGL + K +V+ G+ ST +GT P Sbjct: 866 ATHRNSIFKPFSQVDSSDTREKGGTGLGLNICKELVERMNGRIDFESTLGEGTTFRFTCP 925 Query: 810 LYDTSHPHDC 819 L + P D Sbjct: 926 L---AEPADA 932 >gi|288935843|ref|YP_003439902.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22] gi|288890552|gb|ADC58870.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22] Length = 895 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 81/255 (31%), Positives = 128/255 (50%), Gaps = 5/255 (1%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI+ K + A K A + + KS FLA +SHEIRTP+ I+G +++ + Sbjct: 240 TLQDITRRKAAELLAIEAAKEAREANEAKSAFLANMSHEIRTPMNGILGMAQLCLDT--- 296 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + EY + + S +L I+ND+LD S+IESGKM + EP+ + + I Sbjct: 297 PLTAEQR-EYLSLVMSSAQSLLHIINDILDFSRIESGKMQVDEEPLEIRPFIQSLIRPHM 355 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A+EK I + + +P +L D ++QI N+L NA+ FT G ++ Sbjct: 356 PAASEKGIELLVDISPAVPEVLIVDGPRLRQILTNLLGNALKFTHQGEVLLAIAPADDES 415 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 R+RDTG+G+ + + + F Q +S R GTGLGL ++ +V G+ + Sbjct: 416 RWRFRIRDTGIGIAPEKQKAIFEAFSQADSSTTRRYGGTGLGLTISARLVSLMGGELTVD 475 Query: 796 STPAKGTLIEIIFPL 810 S P G+ PL Sbjct: 476 SQPGAGSEFAFTLPL 490 >gi|240145207|ref|ZP_04743808.1| sensory box sensor histidine kinase/response regulator [Roseburia intestinalis L1-82] gi|257202724|gb|EEV01009.1| sensory box sensor histidine kinase/response regulator [Roseburia intestinalis L1-82] Length = 891 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 82/266 (30%), Positives = 144/266 (54%), Gaps = 12/266 (4%) Query: 550 FSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 F +C + +SE+++++N+ A+ +A + +S FLA +SHEIRTP+ IIG +E Sbjct: 172 FLTCAFMFIQITLSEYQRKENEKQQAELVAAMNT--QSRFLANMSHEIRTPINTIIGLNE 229 Query: 609 V-IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 + ++ + + IE AN I + ++L ++ND+LD+SKIE+GKM + E Sbjct: 230 MTLREENL----SDDIIENANNIQSASKMLLSLINDILDLSKIEAGKMEVVPARYETGEL 285 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QI 725 SE ++ + A+EK + + + +P +L D +KQ+ NILSNAI +T G + Sbjct: 286 FSEIVNTTWIRAHEKNLEFCVNVSEKLPSMLYGDEMRIKQVLTNILSNAIKYTQKGSVTL 345 Query: 726 IISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + + T +E++L+ V DTG+G+ +++ F ++ EGTGLGL + Sbjct: 346 FVESEQTGADEILLKMAVIDTGMGIRQDDMKYLFDSFKRVNEGSTKGIEGTGLGLSICSQ 405 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809 +V+ G+ + S KG+ I P Sbjct: 406 LVNLMGGQITVDSIYQKGSTFTITIP 431 >gi|221633575|ref|YP_002522801.1| histidine kinase PhoR1 [Thermomicrobium roseum DSM 5159] gi|221157115|gb|ACM06242.1| histidine kinase PhoR1 [Thermomicrobium roseum DSM 5159] Length = 421 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 95/359 (26%), Positives = 168/359 (46%), Gaps = 26/359 (7%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 QL ++ + SDG+ +++ +G ++S NRA +L + L +P+ L +N Sbjct: 85 QLAALFDHLSDGVVLVDPDGQVVSLNRAARELLPGGRSEALGRPYAEVLRDYE---LNEL 141 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 + L+ T + LG + + + ++ + + +L + DI+E + Sbjct: 142 VARALAGAAPTTGRFVELG--RPRRSIQAQVSVLQGADRPLVTLVLRDITELR------- 192 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYID 631 + + + DF+A VSH++RTPL A+ E + + G L +P E + I Sbjct: 193 -------RTETIRRDFVANVSHDLRTPLAALQALVETLLD---GALADPAVAEDFLRRIA 242 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 + +VN LL+++K ESG++ L P L E + + A K I + A Sbjct: 243 VEVEHMTRLVNQLLELTKAESGQLQLARVPTDLAELARATLRRFEPRAASKGIALTVQVA 302 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 +P + D + Q+ N+L NA+ FTP+GGQI + S E I+RVRDTG G+ Sbjct: 303 PELPPVACDPERIGQVLANLLDNALKFTPAGGQITVEIAAASG-EAIVRVRDTGPGIPAD 361 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 EL++ + F + ++ G G GL + K +V + G+ + S P G ++ PL Sbjct: 362 ELDRVFERFFKGDRARSGGGSGLGLA--IVKHLVQLHGGRVWAESPPGGGAIVGFALPL 418 >gi|295699239|ref|YP_003607132.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] gi|295438452|gb|ADG17621.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] Length = 979 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 80/255 (31%), Positives = 127/255 (49%), Gaps = 8/255 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++ K + KL A+ A+ + KS FLA +SHEIRTPL AI+G E++ PL Sbjct: 469 DVTTLKNTERKLDEARAAADAANQAKSAFLAMMSHEIRTPLNAILGNLELLGRSPLSPLQ 528 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + S +L I+ND+LD SK+ESG+M L L + + E ++ + A Sbjct: 529 EER----VGVVTSSSTALLGIINDILDFSKVESGQMTLESISFDLAQVIREVAAMFEPVA 584 Query: 680 NEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNE 735 K + + + P L D ++QI +N++SNAI FT +G ++ + + Sbjct: 585 QAKGLEFDCVIDDALAPHYLGDPTRIRQIVINLVSNAIKFTATGDVLLEVYLKDDTAEDS 644 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +++ V DTG+GMT + E F Q +S R GTGLGL L + + G ++ Sbjct: 645 PIVIGVSDTGIGMTPQQQESLFHAFTQADSSIARRYGGTGLGLALCLRLTELMHGTIWVK 704 Query: 796 STPAKGTLIEIIFPL 810 S G+ + P+ Sbjct: 705 SELHAGSTFVVTLPI 719 >gi|315500524|ref|YP_004089326.1| multi-sensor signal transduction histidine kinase [Asticcacaulis excentricus CB 48] gi|315418536|gb|ADU15175.1| multi-sensor signal transduction histidine kinase [Asticcacaulis excentricus CB 48] Length = 644 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 95/362 (26%), Positives = 173/362 (47%), Gaps = 19/362 (5%) Query: 457 ILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT----PSVMNH 511 ++E D GI ++ +G++ S N ++ G+ +IL + F+ F T P+ M Sbjct: 282 VIEEVRDYGIFALDPDGVVTSWNLGAERIKGWTAPEILGQHFSRFYPDETRDFLPAQMLQ 341 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL----PFSSCYSLTMHDISEWKQE 567 + R T+E K+ ++I L ++ D++E ++ Sbjct: 342 RARD------RGTVEDEGWRLRKDGSRFWANVVITSLHDDNGQVRGFAKVTRDMTERRRS 395 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + L A++ A + KS+FL+R SHE+RTP++AI+GF ++++ L P + Sbjct: 396 EEALRMAREDAIAANLAKSEFLSRTSHELRTPMSAILGFGQLLELDE-ETLSTP-HRAAV 453 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I ++G +L ++NDLLDIS IE+G ++ E V LD+ V E +L + + Sbjct: 454 QQIMKAGRHLLSLINDLLDISSIEAGATDMSIEAVDLDDVVQEVHALAAPIVATGGLSFQ 513 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 A AD R + Q+ LN+++NA + +G + ++ +++ + V D G G Sbjct: 514 LDAAEPGLIAQADRRRLIQVLLNLIANAAKYNRTGTCVRLAYGR-KGDDIRIEVEDDGEG 572 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + PF ++ + R EGTGLGL L+K +V++ G+ + PA+G Sbjct: 573 IDPSAASRLFTPFDRLGQQSKTRVEGTGLGLALSKRLVESMSGEIG-YEAPAQGARFWFT 631 Query: 808 FP 809 P Sbjct: 632 LP 633 >gi|237746376|ref|ZP_04576856.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes HOxBLS] gi|229377727|gb|EEO27818.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes HOxBLS] Length = 907 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 93/322 (28%), Positives = 162/322 (50%), Gaps = 36/322 (11%) Query: 520 DLRQTLEKI-TLGSTKEEKLLSLRII-----IKKLPFSSCY--------------SLTMH 559 DL++ + ++ T+ +T E + +RII +K L + CY S+ M Sbjct: 309 DLKRIVSRLETVDTTGENIVTEVRIITRSGEMKYLNMTLCYASAEDSWDGIPSFYSVGM- 367 Query: 560 DISEWKQEKNK----LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 D++E ++E+ + L A A S K++FL+ +SH+IRTP+ AI+G + + + Sbjct: 368 DVTEQREEQARQRRALEEAYHAARVASEAKTNFLSSMSHDIRTPMNAIMGMALIAQTNLA 427 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P R + + I S +L ++N++LD+SKIESG+++L E VSL E + + + Sbjct: 428 SP---ERVADCLDKISVSSRHLLSLINEILDMSKIESGRIDLVAEEVSLPELIRNVMGMC 484 Query: 676 QLYANEKRILIRTSFANNI--PRILADLRSVKQIALNILSNAIHFTPSGGQII-----IS 728 Q EK + S A+ + I+ D ++Q+ +N+LSNA+ +TP GG + + Sbjct: 485 QPLLREKGLEFHVS-ASQVRHENIVIDGGRLQQVLMNLLSNAVKYTPEGGTVGFVVRELP 543 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 T + V D G+GM L +PF + + + R +GTGLG+ +A+ +V Sbjct: 544 TGIKKRGQYEFVVEDNGIGMPAAFLPHLFEPFSRAEDPRISRIQGTGLGMAIAENIVRMM 603 Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810 G + S P KG+ + P Sbjct: 604 NGTITVESEPEKGSRFTVSLPF 625 >gi|160940185|ref|ZP_02087530.1| hypothetical protein CLOBOL_05074 [Clostridium bolteae ATCC BAA-613] gi|158436765|gb|EDP14532.1| hypothetical protein CLOBOL_05074 [Clostridium bolteae ATCC BAA-613] Length = 852 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 83/274 (30%), Positives = 142/274 (51%), Gaps = 19/274 (6%) Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + I L F YS+T + + ++L A++ A + S KS+FLA +SH+IRTP+ A Sbjct: 310 LFILTLIFLRYYSMT-------RSQLHELEKARQTALESSKAKSEFLANMSHDIRTPMNA 362 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I+G + + + + ++ I S +L ++ND+LD+SKIESGK+ L E Sbjct: 363 IVGMTAIATAH----MDDREQVQSCLRKITLSSKHLLGLINDVLDMSKIESGKLTLTTEQ 418 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTP 720 +SL E ++++Q K+ N + + D + Q+ LN+LSNA +TP Sbjct: 419 ISLQEVTEGIVNIMQPQVKAKKQTFDIHVDNILTENVWCDGVRLNQVLLNLLSNATKYTP 478 Query: 721 SGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 GG I +S + + + + + V+D G+GM+ L+K + + + +++ + EG Sbjct: 479 EGGAIRLSLSEEKSPKGENYVRIHINVKDNGIGMSQDFLKKIYESYSRADSARVHKTEGA 538 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GLG+ + K +VDA G + S KGT I F Sbjct: 539 GLGMAITKYIVDAMEGGIEVQSEIGKGTEFRITF 572 >gi|240140121|ref|YP_002964598.1| putative integral membrane sensor hybrid histidine kinase [Methylobacterium extorquens AM1] gi|240010095|gb|ACS41321.1| putative integral membrane sensor hybrid histidine kinase [Methylobacterium extorquens AM1] Length = 1071 Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 139/250 (55%), Gaps = 10/250 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I+ K KL AK+ AE + KS ++ +SHE+RTPL A++G++++++ P Sbjct: 583 EIAAHKVTDAKLQQAKETAEAANLAKSRYVVGISHELRTPLNAVLGYAQLLEGDPSIP-- 640 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 PR I RS + +++ LLDIS++E+G++ H + L + +++ + +V+L A Sbjct: 641 EPRR-NGIRVIRRSAQHLSGLIDGLLDISRMEAGRLQTHRNEIRLADFLAQIVDMVRLQA 699 Query: 680 NEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + R + +P ++A D + ++QI LN+LSNAI FTP G++ + T+ + + Sbjct: 700 EGAGLTFRFTRPEILPAVVATDEKRLRQILLNLLSNAIKFTPE-GEVALEMTY-RGQVAV 757 Query: 739 LRVRDTGVGMTNYELEKAMKPF--GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +RDTG+G+ +L + +PF G +P ++ GTGLGL +A + G+ + S Sbjct: 758 FTIRDTGLGIPEADLGRIFEPFERGSMPAARA--APGTGLGLTIAHLLSQVMGGEITVES 815 Query: 797 TPAKGTLIEI 806 +GT + Sbjct: 816 RVGEGTCFRV 825 >gi|229175296|ref|ZP_04302811.1| hypothetical protein bcere0006_43760 [Bacillus cereus MM3] gi|228608128|gb|EEK65435.1| hypothetical protein bcere0006_43760 [Bacillus cereus MM3] Length = 545 Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 100/376 (26%), Positives = 181/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ L + + Sbjct: 198 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEEYLDRLY---------- 247 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 + + TEI+ L +E+I + K K + L + I++ F Sbjct: 248 YESFHHTEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 302 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 303 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 346 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L V + + + Sbjct: 347 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIRM 405 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + + ++ D +KQI +N+++NAI +TP+GG + + Sbjct: 406 VLDNKAGEKEISLQVNALKGVS-VIGDPSRLKQIFINLMNNAIVYTPAGGVVSVELAEDK 464 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 465 YNAYI-KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 523 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 524 VDSEVGEGTTFTVVLP 539 >gi|325108371|ref|YP_004269439.1| integral membrane sensor signal transduction histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324968639|gb|ADY59417.1| integral membrane sensor signal transduction histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 609 Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 129/247 (52%), Gaps = 24/247 (9%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K++FLA +SHE+RTPL +I+GFS+V+ + N + Y I SG +L ++ND+ Sbjct: 307 KNEFLATMSHELRTPLNSILGFSDVLGS---ADNLNDKQKRYLGNISSSGQRLLTLINDI 363 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD++KIESGKM LH S+ E V + + A+ K I + + ++P + D + Sbjct: 364 LDLAKIESGKMELHAVEFSIAEIVEQLCLSISPLADRKNIELTWMCSPDMPPMYQDAGKI 423 Query: 705 KQIALNILSNAIHFTPSGGQIIISTT---------------HTSNEEVILRVRDTGVGMT 749 +QI N+LSNA+ FTP GG++ + T + + V + V DTG+G+ Sbjct: 424 QQILTNLLSNAVKFTPDGGRVRVEVTPLCLVPDENNTDDSVPAARDLVQISVADTGIGIP 483 Query: 750 NYELEKAMKPFGQ---IPNSQQI---RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 + E+ + F Q +P + + EGTGLGL + K + G+ + S KG+ Sbjct: 484 LADQERIFEKFRQSSAVPGQEDLLTREYEGTGLGLSIVKELCKLLGGEVKVESEFGKGST 543 Query: 804 IEIIFPL 810 + P+ Sbjct: 544 FVVRIPI 550 >gi|281417527|ref|ZP_06248547.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum JW20] gi|281408929|gb|EFB39187.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum JW20] Length = 902 Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 116/378 (30%), Positives = 187/378 (49%), Gaps = 30/378 (7%) Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-FT 498 TRI RK E ++ +L +E + I + + G I N +++ GY +++ K F Sbjct: 270 TRI--RKAEEKLQKLSQAVEQSPGIIVMADTRGNIEYVNPRFTEVTGYSFDEVKGKSLFF 327 Query: 499 VFLEQNTPSVMNHYLTEILS-LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 + LE+N + + S + R + + + + II + Y Sbjct: 328 MELEENGEEKCKDMIQAVFSGKEWRSEIRHKSKNNVVFWEYAYYSPIINSEGVVTNYLKV 387 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF------SEVIK 611 DI+E K L AK+ AE + KS+FLA +SHEIRTPL IIG +E+ Sbjct: 388 SEDITERKLMSENLFKAKEAAEAANRAKSEFLANMSHEIRTPLNGIIGMTNLTLQTELTD 447 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM---NLHFEPVSLDEAV 668 QR E N ++ L+L ++ND+LD SKIE+GKM N+ F+ +L E Sbjct: 448 EQR----------ENLNIVNSCAELLLRVINDILDYSKIEAGKMTLENVKFDFFNLLEKT 497 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QII 726 +A +VQ ANEK + + + IPRIL D ++Q+ N++SNA+ FT G +I Sbjct: 498 YKA-HIVQ--ANEKGLRLSYTVQKGIPRILVGDPGRLQQVLNNLISNAVKFTDIGEVRID 554 Query: 727 ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + ++ V L+ V DTG+G+ ++ K F Q+ +S + GTGLGL ++K + Sbjct: 555 VDIIEKRDDSVKLKFTVSDTGIGIDGDKMNMLFKSFSQVDSSITRKYGGTGLGLAISKQL 614 Query: 785 VDANMGKFYIFSTPAKGT 802 V+ G+ ++ S KG+ Sbjct: 615 VEMMGGEIWVESQKGKGS 632 >gi|147668883|ref|YP_001213701.1| PAS/PAC sensor signal transduction histidine kinase [Dehalococcoides sp. BAV1] gi|146269831|gb|ABQ16823.1| PAS/PAC sensor signal transduction histidine kinase [Dehalococcoides sp. BAV1] Length = 581 Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 99/364 (27%), Positives = 177/364 (48%), Gaps = 41/364 (11%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L ++LE DGI +++REG I N A ++F ++ F ++ +H + Sbjct: 251 LSAVLERMGDGIFLLDREGSINLLNHASERIFKLEAGGVIGHSFV-------EAIRDHEI 303 Query: 514 TEILSL---DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 + +Q + + L + K L II L S Y + + D+SE + + Sbjct: 304 NAVFERAKSSGKQEMGFVELTAGKR----FLGIIATPLVSQSGYLVLVQDLSELR----R 355 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L ++ DF+A +SHE+RTP+T++ +E ++ G +P A +I Sbjct: 356 LEKVRR----------DFVANISHELRTPITSLKLLTETLQE---GAASDPDV--AAGFI 400 Query: 631 DRSGNLVLD----IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 D+ +L +D +V +L D+S IESG+ L+ +P + A+ A + A I++ Sbjct: 401 DKI-HLEVDKLAQLVTELSDLSAIESGQAVLNLQPGDIRTAIKLAAERLSPQAERAGIIL 459 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 +P++ D V+Q+ +N++ NAI FTP GG+I I T ++ +++ V D+G+ Sbjct: 460 GVELPETLPQVRLDENRVEQVLVNLVHNAIKFTPKGGKIKIG-VRTQSQTLVVYVTDSGI 518 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + + F ++ S+ G GTGLGL ++K +V A+ G + S KG Sbjct: 519 GIPEDDLTRVFERFYKVDKSRS--GGGTGLGLAISKHIVQAHGGSIWAESVYGKGATFSF 576 Query: 807 IFPL 810 PL Sbjct: 577 SLPL 580 >gi|330446361|ref|ZP_08310013.1| TMAO reductase sytem sensor TorS [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490552|dbj|GAA04510.1| TMAO reductase sytem sensor TorS [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 971 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 78/239 (32%), Positives = 130/239 (54%), Gaps = 7/239 (2%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A+ AEK + KS FLA +SHEIRTP+ ++G + ++ + + P+ Y + I+RS Sbjct: 459 ARDEAEKANRAKSSFLATMSHEIRTPMNGVLGTASLLADTQL----TPQQKRYLDVINRS 514 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +LDI+ND+LD SKIE+G +++ S+ V++ ++++ A KRI + A Sbjct: 515 GETLLDILNDILDYSKIEAGHLDIRPSDFSVSRMVTDVANMLEGRALAKRIGLEYHIAPE 574 Query: 694 IPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVGMTNY 751 + + D ++Q+ +N++ NAI FT +G I H +E++ VRDTG+G+ Sbjct: 575 VEGMWYGDESRIRQVLVNLVGNAIKFTDNGKVSITVEPHPDMPDELLFSVRDTGIGIDEE 634 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 E F Q ++ EGTGLGL ++K +V A G+ + S +G+ PL Sbjct: 635 EQNLLFNAFKQAEAGRK-SIEGTGLGLAISKHIVAAMDGEIGLDSVVGEGSCFWFALPL 692 >gi|239628563|ref|ZP_04671594.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518709|gb|EEQ58575.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 838 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 82/247 (33%), Positives = 134/247 (54%), Gaps = 12/247 (4%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 EW+Q ++ L A A + KS+FL+ +SH+IRTP+ AI+G +++ K P Sbjct: 437 EWEQRED-LEQALIAANSANIAKSNFLSNMSHDIRTPMNAILGMADIAKQYAANPEKVTS 495 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +E +Y S +L +++++LD+S+IESGKM L SL + +S+ Q EK Sbjct: 496 CMEKISY---SSKHLLSLIDEVLDMSRIESGKMLLDNTAFSLSCMLEGIVSMFQAPIKEK 552 Query: 683 RILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVIL 739 ++ N+I ++ D + +I +NILSNAI +TP G+I S + ++E Sbjct: 553 KLTFHME-KNHIENDSLIGDEFRLSRILVNILSNAIKYTPEQGEISFSIAESQPDKEGYA 611 Query: 740 R----VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 R ++DTG GMT L+ PF ++ +GTGLG+ +AK+M+D G ++ Sbjct: 612 RYRFIIKDTGRGMTEEFLKTIFLPFTRMEEKDGNHTQGTGLGMAIAKSMLDLMGGSIHVE 671 Query: 796 STPAKGT 802 S P KG+ Sbjct: 672 SAPGKGS 678 >gi|229093684|ref|ZP_04224783.1| hypothetical protein bcere0021_44080 [Bacillus cereus Rock3-42] gi|228689569|gb|EEL43377.1| hypothetical protein bcere0021_44080 [Bacillus cereus Rock3-42] Length = 571 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 101/376 (26%), Positives = 181/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ L + + Sbjct: 224 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEEYLDRLYY--------E 275 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 +H TEI+ L +E+I + K K + L + I++ F Sbjct: 276 SFHH--TEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 328 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 329 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 372 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L V + + + Sbjct: 373 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHM 431 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+GG + + Sbjct: 432 VLDNKAGEKEISLQVNTLKRVS-VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDK 490 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 491 YNAYI-KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 549 Query: 794 IFSTPAKGTLIEIIFP 809 + S KGT ++ P Sbjct: 550 VDSEVGKGTTFTVVLP 565 >gi|222147058|ref|YP_002548015.1| two component sensor kinase [Agrobacterium vitis S4] gi|221734048|gb|ACM35011.1| two component sensor kinase [Agrobacterium vitis S4] Length = 911 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 111/451 (24%), Positives = 206/451 (45%), Gaps = 24/451 (5%) Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 L L A KL + + K ++ + + S T+ W+ N + I Sbjct: 467 LDRLRSAGKLPEQLSWKA---WKENTLSVYRSIDTQTVLWHLPNGQTLRVIASAHPQGGA 523 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 + +N E D++TR N V ++ S+G+A+ +G I +N A L+ Sbjct: 524 TWVFENLTEQVDLETRYNTL-----VRVQGETIDHLSEGVAVFGPDGRIRLSNPAFRALW 578 Query: 486 GY------PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 G P I L P + I S + + + T+ E + Sbjct: 579 GITETQAAPGTHIRAIEEACALSYEKPDGWRAFGKMITSFEDERPSSQGTI-----ELMS 633 Query: 540 SLRIIIKKLPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 L + +P + + LT +I++ + + L + K K+DF+ +S+E+R+ Sbjct: 634 GLVLDYAVIPLPNAQTMLTFVNITDSVRAERALLEKNEALRKADELKNDFVQHISYELRS 693 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PLT IIGF++++K+ GPL N R EY ++I S ++L IVND+LD++ +++G M L Sbjct: 694 PLTNIIGFTDLLKSSAIGPL-NERQGEYVDHISTSSAVLLTIVNDILDLATVDAGIMRLT 752 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 + + L + + + + E + + +++ I+AD + +KQI + I++NA++F Sbjct: 753 YSDIDLTDLLDDVSMQMTDRLQEGGVTLEILAPSHLGDIVADQQRLKQILIKIITNAVNF 812 Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 +P G ++++ + + + V DTG G+ L K F N++ + G GLGL Sbjct: 813 SPEGAKVVLKCWR-EDADFVFSVSDTGCGIPEDMLPSVFKRFSS--NAKGGKRTGAGLGL 869 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + ++ V + G I S P +GT + P Sbjct: 870 SIVESFVHLHNGTVSINSVPNQGTTVLCRIP 900 >gi|220908589|ref|YP_002483900.1| histidine kinase [Cyanothece sp. PCC 7425] gi|219865200|gb|ACL45539.1| histidine kinase [Cyanothece sp. PCC 7425] Length = 781 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 139/245 (56%), Gaps = 11/245 (4%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q + +L AK+ A+ + KS+FLA +SHE+RTPL I+GF+++++ + + + Sbjct: 306 QSQAELRQAKEAADTANQAKSEFLANMSHELRTPLNGILGFAQILEQ---SAELSEKELN 362 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I G+ +L+++ND+LD+SKIE+ K+ L V L E + AI + ++ A +K I Sbjct: 363 SVKVIHECGSHLLNLINDILDLSKIEARKLELKPGKVYLFELLHSAIEMCRIRAEQKGIQ 422 Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG----QIIISTTHTSNEEVILR 740 + +P I+ D +KQ+ +N+L+NAI FT G ++ S S + V LR Sbjct: 423 LIYEPDPALPAIIYTDGIRLKQVLINLLNNAIKFTDHGQVTFRVVLQSLPPDSTQIVCLR 482 Query: 741 --VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG+G+ + +LEK PF ++ + + EGTGLGL L++ +V + + S P Sbjct: 483 FEVEDTGIGILSGQLEKIFIPFERVSDPNRYV-EGTGLGLALSQTIVQHLGSQIQVKSQP 541 Query: 799 AKGTL 803 +G+L Sbjct: 542 GQGSL 546 >gi|116249796|ref|YP_765634.1| two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254444|emb|CAK05518.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 861 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 109/396 (27%), Positives = 191/396 (48%), Gaps = 27/396 (6%) Query: 430 QNGIEPEDVDTRINKR-KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 +N E D++TR N K++ E ++ S+G+A+ +G I +N A L+G Sbjct: 478 ENLTEQVDLETRYNTLVKVQGET------IDHLSEGVAVFGPDGRIRLSNPAFRALWG-- 529 Query: 489 VEDILRKPFT---VFLEQNTPSV-----MNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 + + KP T E TPS + I S D + + TL E Sbjct: 530 ITETEAKPGTHIRALGEACTPSYDRPDGWKTFAELITSFDDERRSGQGTL-----ELFSG 584 Query: 541 LRIIIKKLPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 L + +P + + LT ++++ + + L+ + K K+DF+ VS+E+R+P Sbjct: 585 LVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELKNDFVQHVSYELRSP 644 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 LT IIGF+++++ GPL R EY ++I S +++L +VND+LD++ +++G M L++ Sbjct: 645 LTNIIGFTDLLRTPGVGPL-TERQAEYIDHISTSSSVLLTLVNDILDLATVDAGIMRLNY 703 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 + L++ + + + +E + + + + I+AD + +KQI L +LSNA +F+ Sbjct: 704 ADIDLNDLLDDVSMQIADRLHESGVALEITAPAYLGSIVADPQRLKQILLKLLSNAANFS 763 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 P G I + H + + V D G G++ + F S + RG G GLGL Sbjct: 764 PEGTSISLE-CHREGTDFVFAVSDRGPGISPDMIATVFDRFATGAKSGK-RG-GAGLGLS 820 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 + + V + G I S P KGT + P D H Sbjct: 821 IVDSFVSLHHGDVTIDSEPGKGTTVVCRIPSVDVPH 856 >gi|311693144|gb|ADP96017.1| extracellular solute-binding protein, family 3 [marine bacterium HP15] Length = 902 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 76/265 (28%), Positives = 135/265 (50%), Gaps = 22/265 (8%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + K + + AE S KS+FLA +SHEIRTP+ A+IG+S+++ N + +P+ Sbjct: 531 ELRAAKLEAERLAREAEAASLAKSEFLANMSHEIRTPMNAVIGYSDLLSNS----VTDPQ 586 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y + I +L ++ND+LD+S+IE+GKM L + VS+ + + + L A E+ Sbjct: 587 QRNYLDAIRAGSRSLLMLINDILDLSRIEAGKMRLDYSAVSVRRLLDDVRHIFDLRAREQ 646 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-----HTSNEE 736 I + S + +P ++ D ++Q+ N++ NAI FT GG + +T ++ E Sbjct: 647 GITLEVSVDSRMPGAMMLDETRLRQVLFNLVGNAIKFTHDGGVTVRATAKPLKKRSAEAE 706 Query: 737 ------------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 +I+ V D+G+G+ ++E+ F Q R GTGLGL +++ + Sbjct: 707 QNPEAPERQYYKLIVTVSDSGIGIPPDQVERIFDAFEQQEGQNTRRYGGTGLGLAISRKL 766 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809 G+ + S G++ + P Sbjct: 767 ARMMGGELEVESEQGSGSVFTVTLP 791 >gi|307151274|ref|YP_003886658.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306981502|gb|ADN13383.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1811 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 124/234 (52%), Gaps = 7/234 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +FLA +SHE+R+PL I+G++++++ + + + I+R+ L ++ DL Sbjct: 1441 KDEFLAVLSHELRSPLNPILGWTQMLQTYKLDEKATQQAL---ATIERNAKLQTQLIEDL 1497 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LDIS+I GKM L+ PV+L + A+ V+L A K I I+T FA + +L D + Sbjct: 1498 LDISRILRGKMVLNIAPVNLVSVIQSALETVRLAAEAKNIKIQTRFAAGVGEVLGDSARL 1557 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +Q+ N+LSNA+ FTP+GGQI I + + V+DTG G+ L + F Q Sbjct: 1558 QQVVWNLLSNAVKFTPAGGQIEID-LELKDINAQISVKDTGKGINPNFLPHVFEYFRQED 1616 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK--GTLIEIIFPLYDTSHP 816 + + G GLGL + + + + + G + +P + G + PL T P Sbjct: 1617 SKTTRKYGGLGLGLAIVRHLTELHGGTVAV-DSPGEGLGATFTVSLPLTATPSP 1669 >gi|33415350|gb|AAQ18202.1| hypothetical protein csv012 [uncultured bacterium] Length = 1248 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 87/288 (30%), Positives = 145/288 (50%), Gaps = 24/288 (8%) Query: 537 KLLSLRIIIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 + L R ++LP S Y L + D+++ + +L A+ +AE S KS F+A +SH Sbjct: 630 RFLRHRTRARRLPDGQSRIYGL-VSDVTDEHGQALELQRARDLAEAASQAKSQFMANMSH 688 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 EIRTP+ I+G +E++ G N + +A + RSG +L+I+ND+LD +KIE+G+ Sbjct: 689 EIRTPMNGILGMTELL----LGTPLNDKQRRFAQAVYRSGESLLEIINDILDFAKIEAGR 744 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILS 713 + L L V + + L+ A+EK + + +P ++ D ++QI N+++ Sbjct: 745 LELATCDFVLRTLVEDTLELMAPRAHEKGLELSFREQPGLPSVIHGDPLRLRQILTNLVA 804 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVIL-------------RVRDTGVGMTNYELEKAMKPF 760 NAI FT G+I++ V L VRDTG+G+ + + F Sbjct: 805 NAIKFTEH-GEIVVDIRRAIGGAVELPKPGSLETMELEFMVRDTGIGIPAEVVPRLFSAF 863 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 Q R GTGLGL ++K +V+ G+ + S P G+ E +F Sbjct: 864 VQANGGMARRYGGTGLGLAISKQLVELMGGQIEVNSAPGVGS--EFLF 909 >gi|254513976|ref|ZP_05126037.1| sensor protein GacS [gamma proteobacterium NOR5-3] gi|219676219|gb|EED32584.1| sensor protein GacS [gamma proteobacterium NOR5-3] Length = 508 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 133/241 (55%), Gaps = 6/241 (2%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ--RFGPLGNPRYIEYANYID 631 AK A++ ++ KS FLA VSHE+RTPL AIIG+SE++ ++ P+ +Y + I Sbjct: 261 AKLSADEANAAKSRFLANVSHELRTPLNAIIGYSEMLHDELDDETPIDRKQYQNDLDKIV 320 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI-SLVQLYANEKRILIRTSF 690 SG +L +++D+LD+SKIE+GKM L E EA++ A+ +L L +L F Sbjct: 321 LSGRQLLALIDDILDLSKIETGKMTLVKEQFHPGEALTMAVDALAPLLRRNGNVLQCDDF 380 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMT 749 + +P I D +QI +N+LSNA FT G I +S + T + + + + V DTG+GMT Sbjct: 381 S-TLPMINNDAVKFRQIIVNLLSNAAKFTAE-GMIRVSASFTQATQHLEITVSDTGIGMT 438 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + F Q ++ GTGLGL + + + G+ + S P +G+ + P Sbjct: 439 PEQQALVFEAFVQADDATSNTYGGTGLGLAICRDFCELMGGQISVASEPGEGSTFTVSLP 498 Query: 810 L 810 + Sbjct: 499 V 499 >gi|163852796|ref|YP_001640839.1| ATPase domain-containing protein [Methylobacterium extorquens PA1] gi|163664401|gb|ABY31768.1| ATP-binding region ATPase domain protein [Methylobacterium extorquens PA1] Length = 1071 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 139/250 (55%), Gaps = 10/250 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I+ K KL AK+ AE + KS ++ +SHE+RTPL A++G++++++ P Sbjct: 583 EIAAHKVTDAKLQQAKETAEAANLAKSRYVVGISHELRTPLNAVLGYAQLLEGDPSIP-- 640 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 PR I RS + +++ LLDIS++E+G++ H + L + +++ + +V+L A Sbjct: 641 EPRR-NGIRVIRRSAQHLSGLIDGLLDISRMEAGRLQTHRNEIRLADFLAQIVDMVRLQA 699 Query: 680 NEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + R + +P ++A D + ++QI LN+LSNAI FTP G++ + T+ + + Sbjct: 700 EGAGLTFRFTRPEILPAVVATDEKRLRQILLNLLSNAIKFTPE-GEVALEMTY-RGQVAV 757 Query: 739 LRVRDTGVGMTNYELEKAMKPF--GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +RDTG+G+ +L + +PF G +P ++ GTGLGL +A + G+ + S Sbjct: 758 FTIRDTGLGIPEADLGRIFEPFERGSMPAARA--APGTGLGLTIAHLLSQVMGGEITVES 815 Query: 797 TPAKGTLIEI 806 +GT + Sbjct: 816 RVGEGTCFRV 825 >gi|56413637|ref|YP_150712.1| two-component sensor kinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362561|ref|YP_002142198.1| two-component sensor kinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127894|gb|AAV77400.1| putative two-component sensor kinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094038|emb|CAR59534.1| putative two-component sensor kinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 920 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 128/256 (50%), Gaps = 17/256 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L+ AKK AE+ + KS L +SHE+RTP+ ++G E+++ P IE Sbjct: 377 ERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQT-------TPLNIE 429 Query: 626 YANYIDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 D + N +L I+N+LLD S+IESG L E +L + +A+ +Q A K Sbjct: 430 QQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLRMEETALLPLLDQAMQTIQGPAQSK 489 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 ++ +RT ++P D ++QI +N+L NA+ FT +GG I T E++I V Sbjct: 490 KLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG--IRLTVKRHEEQLIFLV 547 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G G+ + + F Q + Q GTG+GL +A ++ G + S P G Sbjct: 548 SDSGKGIEIQQQSQIFTAFYQADTNSQ----GTGIGLTIASSLAKMMGGNLALKSVPGVG 603 Query: 802 TLIEIIFPLYDTSHPH 817 T + ++ PL + P Sbjct: 604 TCVSLVLPLQEYQPPQ 619 >gi|16126905|ref|NP_421469.1| sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] gi|221235688|ref|YP_002518125.1| GAF/PAS-family histidine kinase/receiver protein [Caulobacter crescentus NA1000] gi|13424253|gb|AAK24637.1| sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] gi|220964861|gb|ACL96217.1| GAF/PAS-family histidine kinase/receiver protein [Caulobacter crescentus NA1000] Length = 690 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 106/384 (27%), Positives = 175/384 (45%), Gaps = 39/384 (10%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL---EQNTPSV-- 508 L + + ++D ++I N +G + NRA GYP+E + PF L +Q + V Sbjct: 194 LSNFFDVSADLLSISNMQGRFVKVNRAWETALGYPIEALEGVPFLPLLHPEDQQSTRVQI 253 Query: 509 --------MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 +N ++ D GS + + + R L F D Sbjct: 254 NRIEVDDEVNGFVNRYRRAD----------GSYCQLEWRARRC--DDLVFG-----VARD 296 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ++E + + +++ A+ AE + K+DFLA +SHEIRTPL +I + + PL Sbjct: 297 VTERLRIQAEMAEARDAAEAANRAKNDFLANMSHEIRTPLNGVIALAAALDET---PL-T 352 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + E I RSG + +V+D+LD+SKIE+G+M L + L V + + +L A Sbjct: 353 SKQAEMVAMIRRSGETLERLVSDILDVSKIEAGQMTLQPQAFDLGALVDGLLDVTRLRAK 412 Query: 681 EKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEE-- 736 EK + +R + L D + Q+ N+ SNA+ FT G I+ + N + Sbjct: 413 EKGVAVRLERSPTAAGGFLGDSVRIGQVLSNLFSNAVKFTDQGEVIVRVDVEEAGNGQAA 472 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + + V DTGVG + E + F Q ++ R G+GLGL ++K +V+ G+ Sbjct: 473 RLFVEVEDTGVGFDAEKAEMIFQRFNQADSTITRRFGGSGLGLSISKTLVEMMGGEITAQ 532 Query: 796 STPAKGTLIEIIFPLYDTSHPHDC 819 S+P G+L + PL T D Sbjct: 533 SSPGAGSLFRVTLPLSRTQMGPDA 556 >gi|149198825|ref|ZP_01875867.1| sensor histidine kinase/response regulator [Lentisphaera araneosa HTCC2155] gi|149138023|gb|EDM26434.1| sensor histidine kinase/response regulator [Lentisphaera araneosa HTCC2155] Length = 903 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 138/240 (57%), Gaps = 10/240 (4%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 N+ + AK A++ + KS FLA++SHEIRTP+ AIIGFS++++N G Y Sbjct: 508 NQQTKAKIAADEANRSKSAFLAKMSHEIRTPMNAIIGFSDLLQNVSMSEKGK----SYLQ 563 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I S N +L +VND+LD+SKIE+GK+ L E +++ + +++ +L ++K + + Sbjct: 564 NISNSSNSLLSLVNDILDLSKIEAGKITLQLEALNISDFINDMHTLFVDRISKKDLNLTV 623 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEE----VILRVR 742 S N+P+IL D ++QI N+LSN++ FT SG I + T N+E +I+ V+ Sbjct: 624 SINKNLPKILELDENRLRQILNNLLSNSLKFTDSGSITITADYKTKPNQEDLIDLIITVK 683 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG G+ + F Q+ Q GTGLGLP+++ + D G + ST A+G+ Sbjct: 684 DTGKGIPINQQPNIFNSFEQVKGQSQAVYGGTGLGLPISRKLADIMNGSLTVNSTVAEGS 743 >gi|67922645|ref|ZP_00516150.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Hpt [Crocosphaera watsonii WH 8501] gi|67855493|gb|EAM50747.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Hpt [Crocosphaera watsonii WH 8501] Length = 731 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 134/254 (52%), Gaps = 14/254 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 ++ ++E + ++K E+ + KS+FL+ + HEIRTPL A+ G + ++ + Sbjct: 53 QELQYLQEEIAEQKASEKALEELNLAKSEFLSMMGHEIRTPLNAVTGMTGLLLDTEL--- 109 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + E+ N I SG +L ++N++LD SKIE+ K+ L P L + E + L Sbjct: 110 -SDQQKEFVNIIRNSGENLLTMINNILDFSKIEANKLELEEAPFELGLCIEEVLRLFVSQ 168 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTS--- 733 A++K++ + N P I+ D +KQI N++ NA+ FTP G +I +S+T Sbjct: 169 ASQKKLELAYLLEPNTPSGIVGDSTRLKQILANLIGNAVKFTPEGEVVIYVSSTVIEGGE 228 Query: 734 -----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 N E+ V+DTG+G+ + +PF Q+ S + GTGLGL ++K + + Sbjct: 229 GEVNPNYELRFAVKDTGIGIPKERCHRLFQPFSQVDASTTRQYGGTGLGLVISKRLSELM 288 Query: 789 MGKFYIFSTPAKGT 802 GK ++ S KG+ Sbjct: 289 GGKMWVHSEEGKGS 302 >gi|94314643|ref|YP_587852.1| two-component regulatory system sensory histidine kinase [Cupriavidus metallidurans CH34] gi|93358495|gb|ABF12583.1| sensor protein, histidine kinase-response regulator [Cupriavidus metallidurans CH34] Length = 784 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 83/268 (30%), Positives = 135/268 (50%), Gaps = 13/268 (4%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y+ M D++E ++ L+ A + AE + KS FLA +SHEIRTPL +I ++++ Sbjct: 281 YAYAM-DVTEMQRYNTLLATASREAEAATEAKSRFLATMSHEIRTPLATVIASLDLLRES 339 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + E + D S L+L+I+ D+LD S+IE+G+M L P+ L + E + Sbjct: 340 EL----STHQREELDLADHSAKLLLEILGDILDFSRIEAGEMKLEQAPIDL-RLIIEDVL 394 Query: 674 LVQLYANEKRILIRTSF--ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII---IS 728 +Q EK+ +I + A +L D ++QI LN++ NA FT G ++ + Sbjct: 395 RIQARQIEKKGVILDFYVEAGLAATLLGDAVRLRQIVLNLVGNATKFTLQGSIVVRALLI 454 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 H + + L V DTG+G+ + K F Q S R G+GLGL + +V A Sbjct: 455 ADHPETQTIQLEVSDTGIGIPAEKQAALFKAFSQADVSTTRRFGGSGLGLSICSRLVQAM 514 Query: 789 MGKFYIFSTPAKGTL--IEIIFPLYDTS 814 G + STP G+ +E+ P+ + S Sbjct: 515 GGAVVLTSTPGVGSTFRVELTLPVVERS 542 >gi|298490004|ref|YP_003720181.1| GAF sensor signal transduction histidine kinase ['Nostoc azollae' 0708] gi|298231922|gb|ADI63058.1| GAF sensor signal transduction histidine kinase ['Nostoc azollae' 0708] Length = 640 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 123/229 (53%), Gaps = 8/229 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG--NPRYIEYANYIDRSGNLVLDIVN 642 +S+FLA +SHE+ TPLT +IG S + PLG + R +Y I SG +L+++N Sbjct: 412 RSEFLATISHELLTPLTYVIGMSSTL---LLWPLGELSKRQRDYLQTIHDSGEHLLEMIN 468 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--ILAD 700 D+LD+S++E+G+ L+ SL ++ + + A +++ ++ N D Sbjct: 469 DILDLSQVEAGRTVLNITDFSLVKSAQNTLDSLLEKARSEKVTLKLDLQINPSHDSFTGD 528 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 V+QI N+L+NAI FTP GG + + + I +V DTG+G+ +L + F Sbjct: 529 STRVEQILWNLLTNAIKFTPEGGNVTLRL-WVEDATAIFQVEDTGIGIPEEQLPLLFEKF 587 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q+ + R EGTG+GL L K +V+ + G+ + ST G++ + P Sbjct: 588 QQLDTPYRRRYEGTGVGLALTKQLVELHRGRIEVESTVGIGSIFTVWIP 636 >gi|152982458|ref|YP_001353582.1| sensor histidine kinase/response regulator [Janthinobacterium sp. Marseille] gi|151282535|gb|ABR90945.1| sensor histidine kinase/response regulator [Janthinobacterium sp. Marseille] Length = 1096 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 147/262 (56%), Gaps = 14/262 (5%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQR 614 L +I ++ L AK+ AE + K+ ++A +SHE+R+PL +I+G+S++ +KN++ Sbjct: 618 LLTQEIDAHQRTDAALQSAKEAAESANQAKTRYVAGISHELRSPLNSILGYSQILLKNEQ 677 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 PR I RSG +L +V++LLD+++IE+ +M L P+ + + +S+ Sbjct: 678 LD--AAPR--TAIQTIQRSGEHLLGLVDELLDLARIEADRMRLEPAPILFAAFIDDLLSM 733 Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 V+ A K + ++ + ++P +LAD + ++QI +N+L+NA+ FT +G T H Sbjct: 734 VRPQAEAKGLRLQYTHGGDLPHYVLADGKRLRQILINLLTNALRFTDTGS----VTLHVE 789 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMG 790 V +R V DTG+G+ + ++ +PF + + ++RGE G GLGL + + ++ G Sbjct: 790 CTGVSMRFDVIDTGIGIAVQDRQRIFQPF-ERGAAGRLRGEPGAGLGLAITEKLILMMNG 848 Query: 791 KFYIFSTPAKGTLIEIIFPLYD 812 + ST +G+ + PL + Sbjct: 849 SLNLISTQGQGSTFVVRLPLME 870 >gi|323499989|ref|ZP_08104945.1| hybrid sensory histidine kinase BarA [Vibrio sinaloensis DSM 21326] gi|323314955|gb|EGA68010.1| hybrid sensory histidine kinase BarA [Vibrio sinaloensis DSM 21326] Length = 929 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 129/251 (51%), Gaps = 8/251 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ Q +Y Sbjct: 275 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFT----RQMLKTTLTNSQTDYLQT 330 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S +L+I+ND+LD SK+E+GK+ L P E++ E +SL A+EK + + Sbjct: 331 IEKSAKNLLNIINDILDFSKLEAGKLALENIPFDFQESLEEVVSLQATSAHEKGLELTLK 390 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTG 745 IP ++ D ++Q+ N++ N+I FT G I + ++V+ VRDTG Sbjct: 391 IDPKIPAGLVGDSLRIQQVLTNLVGNSIKFTERGNIDISVEMRSQKDDVVELQFMVRDTG 450 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFW 510 Query: 806 IIFPLYDTSHP 816 L T P Sbjct: 511 FTLRLNSTDMP 521 >gi|296103859|ref|YP_003614005.1| two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058318|gb|ADF63056.1| two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 948 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 83/258 (32%), Positives = 132/258 (51%), Gaps = 7/258 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT G I+ + + + Sbjct: 561 VRKQLGLYCFIEPDVPLTLHGDPMRLQQVISNLLSNAIKFTDIG--CIVLHVCRAGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + +V G + + P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLVSMMDGDISVDTEP 678 Query: 799 AKGTLIEIIFPLYDTSHP 816 G+ I PLY +P Sbjct: 679 GMGSQFTIRIPLYSAQYP 696 >gi|319795486|ref|YP_004157126.1| integral membrane sensor hybrid histidine kinase [Variovorax paradoxus EPS] gi|315597949|gb|ADU39015.1| integral membrane sensor hybrid histidine kinase [Variovorax paradoxus EPS] Length = 1197 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 139/254 (54%), Gaps = 10/254 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ + A++ A++ + KS +++ +SHE+RTPL +I+G+++++ P P Sbjct: 725 EEARAVAEQAQRAADQANQAKSRYISAISHELRTPLNSILGYAQLMGEDHSVP---PHRQ 781 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I R G +L ++ L I+ IE+GK+ LH P+ + + E + +L A EK + Sbjct: 782 QAVAVIKRGGEHLLSLIEGTLAIAHIEAGKLTLHARPMRFADTMRELADMFELQAAEKGL 841 Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 R +P ++ AD + V QI +N+L NAI FT + GQ+ + + + E + + D Sbjct: 842 QFRFEAGGALPEVVRADEKRVGQILINLLGNAIKFT-AAGQVTLRLAY-AREFAAIEIED 899 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG GMT ++++ +PF + N+ G GLGL +AK + D G+ + STP G+L Sbjct: 900 TGPGMTTEDIDRIFEPFAR-GNAAASSAPGAGLGLTIAKMLTDLMGGEMKVQSTPGVGSL 958 Query: 804 --IEIIFP-LYDTS 814 + + P ++DT+ Sbjct: 959 FCVRLFLPRVHDTA 972 >gi|323701833|ref|ZP_08113503.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans DSM 574] gi|323533137|gb|EGB23006.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans DSM 574] Length = 1274 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 83/262 (31%), Positives = 141/262 (53%), Gaps = 13/262 (4%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L + D++E K + A++ AE+ + KS+FLA +SHEIRTP+ I+GF+E++ Sbjct: 515 LMVVDVTEVAAAKRQAEEAREAAERANQAKSEFLANMSHEIRTPMNGILGFAEILLQTNL 574 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 N + E I + G +LD++ND+LD+SKIESGKM L SL + + EA++++ Sbjct: 575 ----NSQQEESVRIIQQCGENLLDLINDILDLSKIESGKMVLEQTTFSLRKLIYEAVNVI 630 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG-------GQIII 727 + EK + I+ S ++P D ++Q+ N+LSNA FT G GQ Sbjct: 631 EPKLIEKGVEIKISIQKDLPDYFKGDPTRIRQVLNNLLSNAAKFTHEGHVEVKVNGQ-KD 689 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + T + ++ V DTG+G+ +L+ + F Q S + GTGLGL +++++++ Sbjct: 690 HSVETDSFTLVFSVSDTGIGIPREKLDLIFESFTQADGSTTRKYGGTGLGLTISRSLINL 749 Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809 G+ + S +G+ P Sbjct: 750 MGGQITVESEVNRGSKFSFSIP 771 >gi|167574162|ref|ZP_02367036.1| probable two-component sensor/regulator [Burkholderia oklahomensis C6786] Length = 920 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 133/251 (52%), Gaps = 13/251 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 S+ ++ +L+ AK+IAE S KS+ +A +SHE+RTPL I+G ++ Sbjct: 375 SKVRERTRELAEAKRIAESASHRKSEHIASISHELRTPLNGIVGALALLNRSAL----QA 430 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + +S + +L IVN++LD S+IE+G++ L E L + +A+ + + A E Sbjct: 431 EQRDLVRVAQQSSSYLLGIVNNVLDFSRIEAGQLELASEESDLLALLDQAMLTIHIRAQE 490 Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K + +RT A ++P R+ D V+QI +N+L NA+ FT G I T + + Sbjct: 491 KSLSLRTFVAADVPRRVWLDGLRVRQILINLLGNAVKFTEHGH--IHLTVERRADMLAFV 548 Query: 741 VRDTGVGM-TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG G+ +Y+L+ KPF Q+ + G GLGLP+A + + G+ + S Sbjct: 549 VEDTGKGIPDDYQLD-IFKPFVQV----RAHDSGNGLGLPIASRLANLMNGEILLDSRLG 603 Query: 800 KGTLIEIIFPL 810 KGT ++ PL Sbjct: 604 KGTRFTVLLPL 614 >gi|326318214|ref|YP_004235886.1| integral membrane sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375050|gb|ADX47319.1| integral membrane sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 1196 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 123/231 (53%), Gaps = 6/231 (2%) Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 +A++ + KS +++ +SHE+RTPL +I+G+++++ P P + I R G Sbjct: 734 LADQANQAKSRYISAISHELRTPLNSILGYAQLMGEDASVP---PHRRQAVGVIRRGGEH 790 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 +L ++ LDI++IESGK+ L P+ + + E + + + A K + R +P Sbjct: 791 LLTLIEGTLDIARIESGKLTLQVRPMRFADCLHEMVEMFEPQARAKGLAFRFDPQGVLPE 850 Query: 697 IL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 ++ D + V+QI +N++ NAI FT + G + + H + E ++ + D+G G+T E Sbjct: 851 VVRGDDKRVRQILINLIGNAIKFT-AAGHVRLGVRH-ARELALIEIEDSGPGLTEAERAS 908 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 +PF + S Q G GLGL +AK + + G+ + STP G L I Sbjct: 909 IFEPFERGAASSQGAAPGAGLGLTIAKMLTELMGGEMTVTSTPGAGALFRI 959 >gi|288942322|ref|YP_003444562.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897694|gb|ADC63530.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1320 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 8/240 (3%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + +L A AE + KS FLA +SHEIRTP+ +IG + ++ + +P Sbjct: 646 QNQELDRALAQAEASTQAKSQFLANMSHEIRTPMNGVIGITGLLLDTDL----DPEQRRL 701 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 A + SG +L ++ND+LD SKIE+GK+ L L + E + ++ A+EK + + Sbjct: 702 AEIVRDSGENLLALINDILDFSKIEAGKLELEHLEFDLRLLIEEVLEMMAFNAHEKDLEL 761 Query: 687 RTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVR 742 A +P + D R ++Q+ +N++ NAI FT G Q+ + + V Sbjct: 762 TYRIAPQVPTAVRGDPRYLRQVIVNLMGNAIKFTERGEVGLQLALERAEAGRALIRFEVH 821 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D+G+G+ +L K F Q+ +S R GTGLGL +AK + G + S P +G+ Sbjct: 822 DSGIGIPEDQLGKLFTAFNQVDSSTTRRFGGTGLGLVIAKQLAQLMNGDIGLESRPGQGS 881 >gi|294508548|ref|YP_003572607.1| Signal transduction histidine kinase [Salinibacter ruber M8] gi|294344877|emb|CBH25655.1| Signal transduction histidine kinase [Salinibacter ruber M8] Length = 766 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 82/264 (31%), Positives = 132/264 (50%), Gaps = 14/264 (5%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAE-------KESSHKSDFLARVSHEIRTPLTAIIGFSE 608 +T DI+E K++ +L AK+ AE + S KS LA +SHEIRTPLT IIGF+E Sbjct: 487 VTARDITERKRKARRLKEAKEQAELSKLEAEEASRMKSAMLANMSHEIRTPLTGIIGFAE 546 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 I ++ G G +A+ I+ SG +LD ++ +L++SK+E+G+M L P+ L + Sbjct: 547 AIGDEIDGDGG---VAHFADLIEDSGRRLLDTLDAVLNLSKLEAGQMTLESRPIDLADQA 603 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 + A++ + + R AD ++ + N+LSNAI +T G + Sbjct: 604 QQVAREFAAEADDSGLALEVEAEEAGAR--ADEGGLQIVLQNLLSNAIKYTEEG--TVQV 659 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 T+ + E +L++ DTG+GM E +PF Q EGTG+GL + K + Sbjct: 660 RTYREDGEAVLQIEDTGIGMDPAVAESLFEPFRQGSEGLSREYEGTGIGLAVTKKATEQM 719 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYD 812 G + + +G+ P D Sbjct: 720 GGSIDVETEKGEGSTFTARLPAAD 743 >gi|298527922|ref|ZP_07015326.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511574|gb|EFI35476.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1044 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 77/256 (30%), Positives = 127/256 (49%), Gaps = 9/256 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E + +L AK+ AE + KS+FLA +SHE+RTP I+G +V++N Sbjct: 588 DITELVNIQEELIQAKEQAEAANQAKSEFLANMSHELRTPFNGIMGMMQVLQNTDL---- 643 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + E+ N +S +++D+L++S IE+GKM + SL E + L Sbjct: 644 DDEQQEFVNLSIQSSERFARLLSDILELSNIEAGKMIICPAHFSLQELLESLSGLFSAEG 703 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII----ISTTHTSN 734 ++K + + +N+P ++ D VKQ+ ++ NA+ FT G + +S T + Sbjct: 704 HQKGLALEFLMDSNVPAEVIGDATRVKQVMFTLVGNALKFTEQGSVQVQLTPLSATKGGD 763 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V V DTG+G+ L PF Q+ S + +G GLGL L K +VD G + Sbjct: 764 VRVQFSVFDTGIGIPEDRLSDLFNPFVQVDGSYTRKYQGAGLGLSLVKRLVDLMNGNISV 823 Query: 795 FSTPAKGTLIEIIFPL 810 S +GT + ++ P Sbjct: 824 ESEVDRGTTVHVVLPF 839 >gi|219847901|ref|YP_002462334.1| GAF sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219542160|gb|ACL23898.1| GAF sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 725 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 93/370 (25%), Positives = 187/370 (50%), Gaps = 25/370 (6%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L + + G+A+++ G ++ N A +++ P E R F V ++ ++ H L Sbjct: 358 LGQVFSSLPIGLALLDLNGRVIRANPAWHQVWRLP-EQPQRSSFYVGID-----LVEHLL 411 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL-S 572 T LS R + E LG +++ + + +++ P+ + L++ Q +L Sbjct: 412 TR-LSDPFRLS-EFCDLGQRSPDQVFEINLQLRQ-PYQELHVLSVPTRDSHHQLTGRLWV 468 Query: 573 HAKKIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 + + E+ES K +F+ VSHE+RTPLT+I+G++E++ N++ L + E+ + Sbjct: 469 VSDRTRERESDRLKDEFIGIVSHELRTPLTSILGYTEILLNRQ--DLDSESQREFLLTVS 526 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 + + +V DLLD+S++E+G + L+ V L + + E + + ++LI Sbjct: 527 NEADRLHKMVKDLLDVSRLEAGVVKLNRWAVGLWQVIEELTLQLHTQLVQHKLLI--DMR 584 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII----------STTHTSNEEVILRV 741 +P + AD VKQI +N+LSNAI ++P G +I + H + + +++ V Sbjct: 585 TPLPPVFADRDKVKQIIVNLLSNAIKYSPEGTEIQLIVRQAEASDLPAGHPAGQWMLITV 644 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +D G+G+ + + + F ++ NS + G GLGL + + +V+ + G+ ++ ST G Sbjct: 645 QDQGIGIEPEDQARLFERFHRVDNSNTRQKSGVGLGLYITRLLVELHGGRIWVQSTVGVG 704 Query: 802 TLIEIIFPLY 811 + P++ Sbjct: 705 SSFSFTLPIW 714 >gi|284051252|ref|ZP_06381462.1| histidine kinase [Arthrospira platensis str. Paraca] Length = 1064 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 79/270 (29%), Positives = 138/270 (51%), Gaps = 12/270 (4%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 F + + DI+E + +L+ + + K +FLA +SHE++TPLTA++G S + Sbjct: 317 FDKWWLIIAQDITEQYRVAQELTAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSSL 376 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 +K++ G L + R +YA I +SG ++ +VND+LD+++IE+G++ L E V++ Sbjct: 377 LKDKALGELSD-RQAKYAKLIHQSGRHLMMVVNDILDLTRIETGQLELTPEGVNIQTVCD 435 Query: 670 EAISLVQLYANEKRI------LIRTSFANNI----PRILADLRSVKQIALNILSNAIHFT 719 A+ V + I L F+ I I AD ++Q+ +N++SNA FT Sbjct: 436 RALEAVLHLHQQGDIKDSQSSLGSQKFSIEIEPGLETIEADELRLRQMLINLISNAFKFT 495 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 P GG + + + ++ V DTG+G+ + + F Q+ + + EGTGLGL Sbjct: 496 PDGGSMGLRVNRW-EDWIVFTVWDTGIGIPEQKQHLIFEKFQQLESPLTRQFEGTGLGLV 554 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L + + + G S KGT ++ P Sbjct: 555 LCQRLARLHGGDISFISHKGKGTEFTLLLP 584 >gi|283850587|ref|ZP_06367875.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283574158|gb|EFC22130.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 1093 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 99/388 (25%), Positives = 181/388 (46%), Gaps = 36/388 (9%) Query: 440 TRINKRKMEIEVM-----QLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDIL 493 T + +RK + E + QL I + GI++ R +G IL N +++FG+ D++ Sbjct: 569 TDVTRRKRDEEALRESQDQLAKIFRYSPVGISVTTRRDGRILDVNETGARMFGHNKADVI 628 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILS--------LDLRQTLEK--ITLGSTKEEKLLSLRI 543 + T P + E+ + LDLR +TL S + Sbjct: 629 GRTSTEIGLWARPEDRGALMAEMAAAGSVVAKELDLRHKNGSPVVTLYSA---------V 679 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 I+ S ++ + DI+E K + L +K+ AE + KS+FL+ +SHEIRTP+ I Sbjct: 680 PIQVYGESGILAV-LVDITERKAMEQALRRSKEAAETANRAKSEFLSTMSHEIRTPMNTI 738 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 +G + V+ P++ E I+ +G +L ++ND+LD+S+IE+G + + + Sbjct: 739 LGMAGVLAASDL----PPKHTEALRAIEAAGGTLLALLNDILDLSQIEAGGLIMEEKACD 794 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG 722 + + +++ A K + +R +P R+ ++Q+ +N+L NA+ FT Sbjct: 795 IVALAGKLTDMMRPDAARKGLALRLDVQGTLPARLSCSPDRIRQVLVNLLGNAVKFTDQ- 853 Query: 723 GQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 G+I++ + + + L VRDTG+G+ + F Q+ S G GLGL Sbjct: 854 GEIVLELGREDHADTGAWLRLAVRDTGIGIPADKQTVIFDRFTQVNASASRHYGGVGLGL 913 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEI 806 + +V G + STP +G++ + Sbjct: 914 AICNKLVHMMGGSIRVDSTPGQGSVFTV 941 >gi|95930270|ref|ZP_01313008.1| multi-sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95133733|gb|EAT15394.1| multi-sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 946 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 98/375 (26%), Positives = 184/375 (49%), Gaps = 41/375 (10%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +IL+A SDG+ +++ G I+ N++ G P + L + L N SV+ + Sbjct: 601 AILKAISDGLIVVDPLGRIILINQSAQDWLGLPEGETLNRQVATVLHDNDLSVLVGSILA 660 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIII-----KKLPFSSCYSLTMHDISEWKQEKNK 570 SL R ++ + + +L+++++ K++ S + + DI+ ++E ++ Sbjct: 661 GESLS-RHCEVEVPIADQERNRLMAVQVTAVQNDDKEI---SGTLILLRDITR-ERELDQ 715 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGNPRYIEYANY 629 L K++F++ +HE+ TPLT I+GF+E++ N+ + + + E+ Sbjct: 716 L-------------KNEFISSAAHELNTPLTVIMGFAELLVNREYRQSITLEQQQEFLET 762 Query: 630 IDRSGNLVLDIVNDLLDISKIESG---KMNLHFEPVSLDEAVSEAISLVQLYA---NEKR 683 I G ++ IV+DLL + ++E G ++ H + LD ++LV+ Y + R Sbjct: 763 IRNKGEVLTSIVDDLLKLEQLEFGQSIQLQYHCFDLQLD-----IMTLVKHYEKTYTDHR 817 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 ++ + AD V Q+ N+LSNA+ F+P +I IS N + ++ VRD Sbjct: 818 FIVMVEPCE----LWADQERVGQVLDNLLSNAVKFSPPQTRIHIS-LQMKNHQAVITVRD 872 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 G+GM ++K F +I S +G G GLGL +AK+++DA+ G + S +GT Sbjct: 873 EGIGMEQKNIDKVFDKFFRIDGSTTSKG-GLGLGLTVAKSIIDAHHGSIRVDSEVDRGTT 931 Query: 804 IEIIFPLYDTSHPHD 818 + + P + HD Sbjct: 932 VTLTLPCQNRGEEHD 946 >gi|281212452|gb|EFA86612.1| histidine kinase [Polysphondylium pallidum PN500] Length = 1702 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 85/249 (34%), Positives = 128/249 (51%), Gaps = 12/249 (4%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 KN L AK+ AE S KSDF+A +SHEIRTP+ IIG +++ + N EY Sbjct: 1069 KNTL--AKEAAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTEL----NAEQREYL 1122 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + S +L I+ND+LD SKIE+G++ L SL + E + + +++K + I Sbjct: 1123 TMVQSSAASLLTIINDILDFSKIEAGRLELDKSDFSLRTILYETLKTLAWRSHQKGLEII 1182 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRD 743 + P ++ D ++QI N++ NAI FT G + + +N EV L V D Sbjct: 1183 CDIIPDTPDHLIGDPGRLRQIVTNLVGNAIKFTAEGEVSLTVKLEDITNGEVTLAFSVAD 1242 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ +L + F Q S + GTGLGL ++ +V+ GK S P KG+ Sbjct: 1243 TGIGIPAEKLHLIFEAFSQADGSITRKYGGTGLGLTISTRLVELMGGKLKAESIPGKGSR 1302 Query: 804 IEII--FPL 810 + I FPL Sbjct: 1303 FDFIAKFPL 1311 >gi|257059588|ref|YP_003137476.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] gi|256589754|gb|ACV00641.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] Length = 1319 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 104/382 (27%), Positives = 183/382 (47%), Gaps = 48/382 (12%) Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 V L +I++ DG+ +I+ G I NRA++++F ++ P L + P V+ Sbjct: 957 VADLNAIVDNLGDGLIVIDIYGQITRYNRALTEMF-----NLKDSPQGQHLLEVFPPVLA 1011 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYS--LTMHDISEWKQ 566 L I + ++ L K + L +II + C + + D++ Sbjct: 1012 TLLKPIEPDQQKVVTVEVELAQGKIGQALISKIIQGSYGQGTQKCIGAVILIRDVT---- 1067 Query: 567 EKNKLSHAKKIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQ---------RFG 616 AE+E K+DFLA VSHE+RTPLT+++GF+ +I ++ G Sbjct: 1068 -----------AEREIEQIKNDFLATVSHELRTPLTSVLGFAALILDKLNRVIFPWVAIG 1116 Query: 617 PLGNPRYIEYAN----YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS----LDEAV 668 + I+ I + ++ND+LDI+KIESGK+ +FE VS L+ A+ Sbjct: 1117 DQPTQKAIQQVRNNLEIIVAESERLTSLINDVLDIAKIESGKVEWNFESVSPIIILERAI 1176 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 IS L+ ++ LIR F+ ++P I D + Q+ +N+LSNA+ FT G + Sbjct: 1177 ---ISTSSLFEDKNLRLIR-DFSPDLPLIRGDQDRLIQVVINLLSNAVKFTEVGS--VTC 1230 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + E +++ + DTG+G+ + E K F Q+ N + +G GLGL + + +++ + Sbjct: 1231 QAQQNQEYLVIAITDTGIGIPHNEQNKVFDRFQQVGNVLTNKPQGNGLGLSICRQIIEHH 1290 Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810 G+ ++ S +G+ PL Sbjct: 1291 GGQIWVESQLGQGSTFFFTLPL 1312 >gi|167574056|ref|ZP_02366930.1| sensory box histidine kinase/response regulator [Burkholderia oklahomensis C6786] Length = 764 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 98/367 (26%), Positives = 170/367 (46%), Gaps = 23/367 (6%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 ++EA+ D I + + I S N A ++FGY + + + + H L Sbjct: 258 LVEASPDAIVGVGADRRITSWNPAARRMFGYDEQAARGRDVAMLIAPRWRR--RHPLPAS 315 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCY--SLTMHDISEWKQEKNK 570 LS D+ + +E + + +++ LR + P +C SLT+ D E ++ + + Sbjct: 316 LS-DVYEPIENVDVLCARQDGS-RLRATLSASPVFDDRDACVALSLTLRDTGEQRRRERR 373 Query: 571 LSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 H A++ A+ + K + LA VSHE+RTPL I G+ EV++N P G Sbjct: 374 THHSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRN----PAGGALQ 429 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + + IDRS + +V D+LD S + +GK+ L PV L V++ + A + Sbjct: 430 QQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVNDVTGALGTAAQAEG 489 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + + A + D ++Q+ N+LSNA FTP GG++ +S T + ++ V D Sbjct: 490 LDLTVDCALETCIVSGDGERLRQVLSNLLSNAFKFTPRGGRVTVSLMRTDSHATLV-VAD 548 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK-GT 802 TG G++ L + F + S G GLGL + + + + + GK + S + GT Sbjct: 549 TGQGISPEFLPHVFEAFRRADGSPASSRRGLGLGLSIVRHIAELHGGKVEVASAGKRLGT 608 Query: 803 LIEIIFP 809 + P Sbjct: 609 TFTVTLP 615 >gi|219847057|ref|YP_002461490.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219541316|gb|ACL23054.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 763 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 137/246 (55%), Gaps = 13/246 (5%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 ++ HA ++ K+ FLA VSHE+RTPLT+IIG+++V++ G L +P E Y Sbjct: 519 QVQHADRL-------KTTFLATVSHELRTPLTSIIGYTDVLRRGILGEL-SPEVQETLGY 570 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + ++ ++ +ND+L+ S+IE+G++++ EPV + + + + A E+ + + + Sbjct: 571 MRQASLNLMRQINDILEFSRIEAGQLSIEIEPVEVGAIIQNVVGQMLPQARERDLTVNVT 630 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 +IP+I A++ ++Q+ +N+LSNAI F G I IS + + V+D+GVG+ Sbjct: 631 IPPDIPQIAANIGRLEQVLINLLSNAIKFNRPQGWIEIS-VEPRGAWLRINVKDSGVGIA 689 Query: 750 NYELEKAMKPF--GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + E+ F + PN +++ G GLGL + + ++ G + STP +G++ Sbjct: 690 PEDQERIFAEFQRARSPNGERV--HGVGLGLAICRRLITHMGGTIGVTSTPGEGSVFYCD 747 Query: 808 FPLYDT 813 P+ + Sbjct: 748 LPVINV 753 >gi|78776816|ref|YP_393131.1| multi-sensor hybrid histidine kinase [Sulfurimonas denitrificans DSM 1251] gi|78497356|gb|ABB43896.1| PAS/PAC sensor hybrid histidine kinase [Sulfurimonas denitrificans DSM 1251] Length = 884 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 118/399 (29%), Positives = 185/399 (46%), Gaps = 30/399 (7%) Query: 432 GIEPEDVDTRINKRKMEIEV-MQLCSILEATSDGIAII---NREGIILSTNRAVSKLFGY 487 GI DT I K++ EI+ ++L S + D AII ++ G I N K+ GY Sbjct: 130 GILKYYTDT-IYKKEQEIDRHVKLLSEYQKALDESAIISKTDKNGKITYVNDKYVKISGY 188 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL--GSTKEEK----LLSL 541 E ++ ++ Q+ P + Y DL LE + + G+ K K + Sbjct: 189 SAESLIGSYHSIVKHQDMP---DEYFK-----DLWFQLENMGIFRGTIKNNKKNGDYFYI 240 Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 + I K+ + Y T IS + L A+ A+K S K FL+ +SHEIRTPL Sbjct: 241 DVTIVKI--TDPYDNTTEYIS-IANDVTTLIDARLEAQKASQAKEYFLSNMSHEIRTPLN 297 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 AI+GF ++ +Q + ++ +Y I SG +L I+ND+LD SK+ SG+ + Sbjct: 298 AILGFVNLLIDQDL----SKQHRKYLEIILNSGENLLSIINDILDFSKLRSGEFTIEPRI 353 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTP 720 S+ +S + L AN K I I + IP+ + AD +KQI N LSNAI FT Sbjct: 354 FSIHNEISHTLELFVASANLKEITITSFIDPVIPKELYADSLRIKQILSNFLSNAIKFTR 413 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 GG I + T N + + V+D G+G+ ++ F Q ++ GTGLGL + Sbjct: 414 VGGHIHVEAT-CKNRTLRVSVQDNGIGIAAGDISNIFTAFTQAGGAEVEHMVGTGLGLSI 472 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 + G ++ S +G+ + P+ H + C Sbjct: 473 CNQLSKHMNGSVHVVSELGQGSTFWVQLPV--EIHDNSC 509 >gi|55981112|ref|YP_144409.1| sensor histidine kinase [Thermus thermophilus HB8] gi|55772525|dbj|BAD70966.1| sensor histidine kinase [Thermus thermophilus HB8] Length = 963 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 80/235 (34%), Positives = 127/235 (54%), Gaps = 9/235 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +FLA VSHE+RTPL AI+G +E+++ + PL P E I S + ++V++L Sbjct: 737 KGEFLAAVSHELRTPLAAILGLAELLRQE---PL-PPEAQESVELILESAFRLKNMVDNL 792 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD S++E+G+ + PV L + E Q A + R +P + D + Sbjct: 793 LDTSRLEAGRFEVSRRPVHLKPLLLELARSFQGVARLSGVEFRVEV-EELPLMEVDPDRI 851 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 Q+ N+L+NA FTP GG + + EEV + V+DTG G+ E+ + + + + Sbjct: 852 VQVVGNLLANAFKFTPPGGSVRL-WAGVRGEEVWVEVQDTGPGIPKEEIPRLFQRYARAK 910 Query: 765 NSQQIRG-EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 + +RG GTGLGL ++K +V+A+ G+ + S KG+L +I PLY HP D Sbjct: 911 HPG-VRGVAGTGLGLFISKHIVEAHGGRIEVESEEGKGSLFRVILPLYG-PHPGD 963 >gi|256379099|ref|YP_003102759.1| GAF sensor hybrid histidine kinase [Actinosynnema mirum DSM 43827] gi|255923402|gb|ACU38913.1| GAF sensor hybrid histidine kinase [Actinosynnema mirum DSM 43827] Length = 1479 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 11/253 (4%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + +LS A K +KS+F+A +SHE+RTPL +++ ++++ + G L NP+ Sbjct: 1073 ELEDRARQLSSASK-------YKSEFMANMSHELRTPLNSLLILAKLLTDNLDGNL-NPK 1124 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +E+A I SG +L +++D+LD++K+ESG M + +PV + + V SL A EK Sbjct: 1125 QVEFARTIHSSGTDLLQLIDDILDLTKVESGHMQVQTDPVRVSDVVGYVESLTLPLAAEK 1184 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + S ++P L D ++QI N+LSNA+ FT G I T+ V V Sbjct: 1185 GLGFDVSVQPDVPSTLHTDEHRLQQILRNLLSNAVKFTHEGE--IRLRIRTAGPSVAFDV 1242 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +DTG+G+ +L + F Q + + GTGLGL +++ + G+ + S P G Sbjct: 1243 QDTGIGIPAEKLSVIFEAFQQADGTTSRKYGGTGLGLSISRELSALLEGRLDVRSEPGFG 1302 Query: 802 TLIEIIFPLYDTS 814 + + PL D S Sbjct: 1303 STFTLYLPLGDQS 1315 >gi|161936294|ref|YP_131202.2| hybrid sensory histidine kinase BarA [Photobacterium profundum SS9] Length = 927 Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 134/251 (53%), Gaps = 8/251 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + R L + ++ +Y Sbjct: 275 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTR---LSSSQH-DYLLT 330 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S N +L I+ND+LD SK+E+GK+ L P E++ E + L+ A+EK + + Sbjct: 331 IEKSANNLLTIINDILDFSKLEAGKLLLENIPFDFTESLDEVMRLLAPSAHEKGLELTLK 390 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTG 745 + IP ++ D ++Q+ N++ NA+ FT G + S +E I VRDTG Sbjct: 391 VDDRIPAGLIGDPLRIQQVVTNLIGNAVKFTERGNIDVSVELKASKDESIELQFTVRDTG 450 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVTQMGGEISLTSRLHQGSTFW 510 Query: 806 IIFPLYDTSHP 816 + T P Sbjct: 511 FSLSMLKTDLP 521 >gi|325290339|ref|YP_004266520.1| multi-sensor hybrid histidine kinase [Syntrophobotulus glycolicus DSM 8271] gi|324965740|gb|ADY56519.1| multi-sensor hybrid histidine kinase [Syntrophobotulus glycolicus DSM 8271] Length = 894 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 85/293 (29%), Positives = 154/293 (52%), Gaps = 17/293 (5%) Query: 521 LRQTLEKITLGSTKEEKL-------LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 + Q E++ + S ++EK L LR++ + F++ + ++ + K+ + + Sbjct: 246 INQYTERLKVFSFRDEKFSLVPDGSLELRMLAQ--TFNALSNSFQEELVKRKKAEETMKA 303 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK+ AE + KS+FLA++SHEIRTPL IIG+ +++N + EY + + Sbjct: 304 AKEEAETANKAKSEFLAQMSHEIRTPLHTIIGYQYLLENTFL----EEKQTEYVRNLGLA 359 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 +L+I+N++LD SK+E+ KM L L + + S++++ K++ + + Sbjct: 360 SKNLLEIINEILDFSKLEAKKMVLEAVDFDLYLLIEDLCSMLEVEIRRKKLQFNFTIKPD 419 Query: 694 IPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMT 749 +PR L D +KQ+ LN+LSN I FT G Q+ + N V+L V DTG+G+ Sbjct: 420 VPRYLKGDTTRLKQVILNLLSNGIKFTHEGSLQLFVELKEQKNRTVMLCFHVADTGIGIP 479 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 ++E+ + F Q S + G+GLGL ++K +V G ++ S +G+ Sbjct: 480 QRQIEQLFEVFTQGDTSTSRKYGGSGLGLAISKKIVRLMGGDIFLKSVVGEGS 532 >gi|163793336|ref|ZP_02187311.1| periplasmic sensor hybrid histidine kinase [alpha proteobacterium BAL199] gi|159181138|gb|EDP65653.1| periplasmic sensor hybrid histidine kinase [alpha proteobacterium BAL199] Length = 553 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 129/240 (53%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A + AE ++ KS F+A +SHE+RTPL AIIGFS+++ G R Y Sbjct: 307 RLVLAAQQAEAANTAKSSFMAVMSHELRTPLNAIIGFSQLLVESEDGSPLWKRARGYIAD 366 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RSG +L I++D+LD+S+IESG+ L P+ + E V + + E I + Sbjct: 367 IERSGQFLLSIISDILDLSRIESGRYELKPAPLDVVEEVHRIARHLAVSFEENNIDLTLP 426 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 A+ AD R+++Q+ +N LSNA P + +S S + V + V DTGVG+ Sbjct: 427 PASQRASAFADPRALQQVLMNALSNAQKHNPPDTTVTVSVRMPSYDTVQIEVTDTGVGIP 486 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L + +PF QI +S +G GTGLGL + +V A +G + S GT I I P Sbjct: 487 TDQLSRIWEPFVQIESSYSRKGGGTGLGLTICHGLVTAMLGTIEVTSEFGSGTTIRITLP 546 >gi|129306885|gb|ABO30405.1| GacS [Pseudomonas sp. PITR2] gi|129306905|gb|ABO30415.1| GacS [Pseudomonas sp. PILH1] Length = 204 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 125/206 (60%), Gaps = 8/206 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y I++S + +L I+N++ Sbjct: 3 KSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQLDYLGTIEKSADSLLGIINEI 58 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRTSFANNIPRILADLRS 703 LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ + + ++ D Sbjct: 59 LDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLSLVGDPLR 118 Query: 704 VKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 +KQI N++SNAI FT G + ++ H + ++ + ++DTG+G+++ ++ + F Sbjct: 119 LKQILTNLVSNAIKFTREGTIVARAMLEDEHEDSVQLRISIQDTGIGLSSQDVRALFQAF 178 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVD 786 Q NS + GTGLGL ++K +V+ Sbjct: 179 SQADNSLSRQPGGTGLGLVISKRLVE 204 >gi|75910975|ref|YP_325271.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704700|gb|ABA24376.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1195 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 71/259 (27%), Positives = 142/259 (54%), Gaps = 12/259 (4%) Query: 562 SEWKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 SE ++ ++ A+K E++ S +KS+FLA +SHE+RTPL +++ ++++ + Sbjct: 498 SEVARKNQEIEKARKFIEEKAEQLALSSKYKSEFLANMSHELRTPLNSLLILAKLLADNS 557 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 G L N + +EY+ I +G +L+++ND+LD++KIESG +++ EP+ + Sbjct: 558 SGNLSN-KQVEYSQTIYSAGTDLLELINDILDLAKIESGTLSVELEPIDFADLHDYIERT 616 Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTT 730 + A +K + +P I +D + ++QI N+L+NA+ FT GG +I + Sbjct: 617 FRQVAQDKGLSFSIELDERLPSTIFSDPKRLQQILKNLLANALKFTEEGGVTLRIGLDQI 676 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 +T++ + + DTG+G+ + + + F Q+ + + GTGLGL +++ + G Sbjct: 677 NTNHPMITFAISDTGIGIPQEKQQIIFEAFQQVDGTTSRKYGGTGLGLSISRELTQMLGG 736 Query: 791 KFYIFSTPAKGTLIEIIFP 809 + + S P +G++ + P Sbjct: 737 RLGLVSQPGQGSIFTLYLP 755 >gi|227823897|ref|YP_002827870.1| sensory transduction histidine kinase [Sinorhizobium fredii NGR234] gi|227342899|gb|ACP27117.1| sensory transduction histidine kinase [Sinorhizobium fredii NGR234] Length = 827 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 101/356 (28%), Positives = 173/356 (48%), Gaps = 21/356 (5%) Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQ------NTPSVMNHYL 513 ++G+A+ +G I +N A ++G + ++ KP T +EQ + P + Sbjct: 474 AEGVAVFGPDGRIRLSNPAFRAIWG--ISEVEAKPGTHIRAVEQACLSSYDQPDGWKRFA 531 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 I S D + + G + L L + LP + LT +I++ + + L+ Sbjct: 532 HIITSFDDERPSSR---GILELRTGLILDYAVIPLPNAQTM-LTFVNITDSVRVERALTE 587 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 + K + K+DF+ VS+E+R+PLT IIGF++++K FG L N R EY ++I S Sbjct: 588 KNEALRKADALKNDFVHHVSYELRSPLTNIIGFADLLKTPAFGAL-NDRQAEYVDHIATS 646 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 L+L IVND+LD++ +++G + L V+L + + + + E +R A+N Sbjct: 647 SALLLTIVNDILDLATVDAGIVELDMSEVNLLDLLDDVAQQMADRLTESGASLRIDAADN 706 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 + RI+AD + +KQ+ + +L+NA +F P G I + + + V DTG G+ L Sbjct: 707 LGRIVADQQRLKQVFIKLLTNAANFAPDGSAIDLKCRREGG-DFVFSVSDTGPGIPQDVL 765 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F S RG G GLGL + ++ V + G I S +GT + P Sbjct: 766 NTVFNRF----ESYGQRG-GAGLGLSIVESFVSLHHGTVSIRSKEGEGTEVTCRIP 816 >gi|37526937|ref|NP_930281.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786370|emb|CAE15423.1| sensor protein (capsular synthesis regulator component C) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 938 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 83/257 (32%), Positives = 133/257 (51%), Gaps = 7/257 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS + + L +E+ + KS FLA VSHE+RTPL IIG E+++ P Sbjct: 445 DISVRVRMEKSLQEMALASEQANYSKSMFLATVSHELRTPLYGIIGNLELLQAHSL-PAE 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + R + N S L+L I++D+LD SKIES ++ + S E +S IS Sbjct: 504 SVRLLSTMN---NSSALLLKIISDILDFSKIESKQLKIESREFSCQEVISHVISNYLPLV 560 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +K + + +P I D ++Q+ N+L+NAI FT +G II T + + Sbjct: 561 VKKPLTLYCYIEPGVPDYICNDPVRLQQVISNLLNNAIKFTDTGCVIIHVTV--DKDYLY 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +R++DTGVG+++ L + PF QI + + +GTGLGL + + +++ G + S P Sbjct: 619 VRIKDTGVGISDKALIQLFDPFFQIMPNTESSSQGTGLGLAICEKLINLMDGDIEVISQP 678 Query: 799 AKGTLIEIIFPLYDTSH 815 G++ I PLY + Sbjct: 679 QIGSMFSIRLPLYGAKY 695 >gi|325262268|ref|ZP_08129006.1| PAS domain protein [Clostridium sp. D5] gi|324033722|gb|EGB94999.1| PAS domain protein [Clostridium sp. D5] Length = 1001 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 130/251 (51%), Gaps = 16/251 (6%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 K+ L A +S KSDFL+++SH+IRTP+ AI+G + + KN LGN IE Sbjct: 602 KHALEEAYASLNTANSAKSDFLSKMSHDIRTPMNAIMGMAAIAKNN----LGNEEKIEDC 657 Query: 628 -NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + ID SG +L+++N +LD+SKIESG + L E +++ + E ++Q A++KR+ Sbjct: 658 LDKIDISGGHLLELINKVLDMSKIESGNITLSEEKFRIEDVLEEVSLIIQPDADKKRLNY 717 Query: 687 RTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQI-------IISTTHTSNEEVI 738 RT + D VKQI LN+LSNA+ +T G I + E+I Sbjct: 718 RTIVKKPEHSWVHGDAVRVKQILLNLLSNAVKYTNESGYINVYLEEKLTGENGVGCYEII 777 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V D G+GMT K PF + +S+ +GTGLGL + +V G + S Sbjct: 778 --VEDDGIGMTEEFCSKMFLPFERAEDSRVSEIQGTGLGLAITSNLVQMMNGTIQVESEL 835 Query: 799 AKGT-LIEIIF 808 KGT I IF Sbjct: 836 NKGTRFIVTIF 846 >gi|269966421|ref|ZP_06180506.1| sensor protein LuxQ [Vibrio alginolyticus 40B] gi|269829008|gb|EEZ83257.1| sensor protein LuxQ [Vibrio alginolyticus 40B] Length = 858 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 137/263 (52%), Gaps = 17/263 (6%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ + + + + A+K AEK + ++DFLA++SHEIRTP+ I+G ++++K+ Sbjct: 456 QDITTLIEAEKQSNLARKEAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKD------ 509 Query: 619 GNPRYIEYANYID---RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + E N ID SG +L ++ND+LD SKIE GK N+ P S + + ++ Sbjct: 510 -SVETEEQNNQIDVLRHSGEHLLAVLNDILDFSKIEQGKFNIQKHPFSFTDTIRTLENIY 568 Query: 676 QLYANEKRI--LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-- 731 + K + +I N+ I D + QI N++SN++ FTPSG + + Sbjct: 569 RPICESKGVNLVIENKIDPNV-EIFTDQVRLNQILFNLVSNSVKFTPSGSVRLHAELEQF 627 Query: 732 --TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 N +++ + DTG+G+ + +L++ +PF Q + G+GLGL + K++VD Sbjct: 628 YGADNSVLVVEITDTGIGIESDKLDQMFEPFVQEEATTTREYGGSGLGLTIVKSLVDMLE 687 Query: 790 GKFYIFSTPAKGTLIEIIFPLYD 812 G + S GT I P+ D Sbjct: 688 GDVQVRSQKGLGTTFVITMPVKD 710 >gi|237748261|ref|ZP_04578741.1| two-component system sensor histidine kinase [Oxalobacter formigenes OXCC13] gi|229379623|gb|EEO29714.1| two-component system sensor histidine kinase [Oxalobacter formigenes OXCC13] Length = 927 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 84/255 (32%), Positives = 134/255 (52%), Gaps = 10/255 (3%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E ++ L +A A + KSDFL+R+SH+IRTPL AIIG S + + + + P Sbjct: 392 AEQAVQEQVLKNALSAARMANQAKSDFLSRMSHDIRTPLNAIIGMSTISQLK----MKEP 447 Query: 622 RYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + + + ID S +L ++ND+LD+S+IESGKM L E E + ++V A Sbjct: 448 EVLADCLSKIDVSSRYLLSLINDILDMSRIESGKMALSSERFDFVELIGSINTIVYPQAV 507 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII--ISTTHTSN--E 735 ++ + ++ R D + QI +N+LSNA+ FTP GG+I IS + SN Sbjct: 508 AGKLAYQIHQHESLDRYYEGDTLRINQILMNLLSNAVKFTPEGGKIDVHISESRRSNGFA 567 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + RV DTG+GM++ +++ PF Q + G+GLGL + ++V G Sbjct: 568 YIEFRVSDTGIGMSSDFMKRLYLPFEQETDDMARNKVGSGLGLSIVYSLVQIMGGTIDAK 627 Query: 796 STPAKGTLIEIIFPL 810 S +GT ++ PL Sbjct: 628 SEKNRGTTFTVVIPL 642 >gi|153870405|ref|ZP_01999814.1| Periplasmic Sensor Hybrid Histidine Kinase [Beggiatoa sp. PS] gi|152073130|gb|EDN70187.1| Periplasmic Sensor Hybrid Histidine Kinase [Beggiatoa sp. PS] Length = 620 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 81/263 (30%), Positives = 146/263 (55%), Gaps = 24/263 (9%) Query: 560 DISEWKQEKNKLSH-----AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 DI+E ++++ +++ A++ AE + KS+FLA +SHE+RTPL I+G++++++ + Sbjct: 125 DIAETEKKQAEIARKEAEVAQEKAEIANQAKSEFLASMSHELRTPLNGILGYAQILRRDK 184 Query: 615 FGPLGNPRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 L N + +YA + + +SG +L ++ND+LD+SKIE+ KM LH + ++E + Sbjct: 185 --SLNNQQ--QYAIHTMQKSGEHLLTLINDILDLSKIEAQKMELHQQDFHFSHFLTEIVD 240 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG----GQIIIS 728 ++Q+ A K + + F N+P + D ++QI +N+L NA+ FT G I+I Sbjct: 241 MIQVRAMPKTLEFQHDFEANLPIAVNGDETRLRQILVNLLGNAVKFTERGKVTFKVILIG 300 Query: 729 TTHTSNE--------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 E + ++ DTG G+ L+ +PF Q+ + I EGTGLGLPL Sbjct: 301 EKEKKIENRESSPLPNIRFQIEDTGPGIAPEFLKTIFEPFQQVGTERYIT-EGTGLGLPL 359 Query: 781 AKAMVDANMGKFYIFSTPAKGTL 803 ++ V+ + ST +G++ Sbjct: 360 SQKFVEMMDSSLQVTSTVGEGSI 382 >gi|171320942|ref|ZP_02909936.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] gi|171093807|gb|EDT38944.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] Length = 594 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 98/386 (25%), Positives = 174/386 (45%), Gaps = 26/386 (6%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 D + E+ +Q ++++A+ D I I+REG I+S N A ++FGY D +P Sbjct: 110 DAGTERASTEVSRLQR-AVVDASPDAIVGIDREGRIVSWNPAAQRIFGYDEADARGRPLE 168 Query: 499 VFLEQNTPSVMNHYLTEILSLD-LRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SC 553 + + + L + S D +R+ + + L + + R + P SC Sbjct: 169 TLVAMRW--LRRNPLAD--SFDTMREAVGPLELLCVRRDGR-RFRATVSAGPVRGDARSC 223 Query: 554 YSLTMHDISEWKQEKNKLSH---------AKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 +L++ Q + L A+ A+ + K + LA VSHE+RTPL I Sbjct: 224 VALSLTLRETGAQRRRDLRAQRSLQGARDARDRADTSNRLKDELLATVSHELRTPLNVIY 283 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G+ EV++N R L ++ + IDRS + +V D+LD S + +GK+ + PV + Sbjct: 284 GWIEVLRNTRDDAL----QLQAIDAIDRSARSLTRMVGDILDASSLATGKLRIDPMPVDV 339 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 S+ + Q A+ I++ A + + D ++Q+ N++SNA+ FTP GG Sbjct: 340 VRLFSDTVGAFQTAASSAGIVLEFECAASACVVSGDAERLRQMLANLVSNALKFTPGGGA 399 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + + T + +L V DTG G+ + F + +S G GLGL + + + Sbjct: 400 VTV-TLSRDDAHAVLVVADTGQGIPPAFIPHVFDMFRRADDSPASPRRGLGLGLSIVRHI 458 Query: 785 VDANMGKFYIFSTPA-KGTLIEIIFP 809 + G+ + S +G + P Sbjct: 459 AQLHGGQVRVESAGRNRGATFTVTLP 484 >gi|83312834|ref|YP_423098.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82947675|dbj|BAE52539.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 992 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 81/254 (31%), Positives = 136/254 (53%), Gaps = 16/254 (6%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+++AE+ + K+ FLA +SHEIRTP+ +IG + ++ + + +P +A I Sbjct: 346 QAQQVAERANQAKAAFLATMSHEIRTPMNGVIGMTGLLLDTQL----DPEQRHFATTIRD 401 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 S +L ++ND+LD SK+E+GK++L FE V L E++ + ++ A+ K I I + Sbjct: 402 SAESLLTVINDILDFSKLEAGKLDLESTDFELVGLVESI---VDILAPRAHAKGIEIASM 458 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTG 745 ++P + D ++QI +N+ NAI FT GG I TS + + VRDTG Sbjct: 459 VDPDLPAWVRGDPGRLRQILMNLAGNAIKFTSHGGISIEVRDETSPDGAGRLRFDVRDTG 518 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL-- 803 +G+ + + F Q+ S R GTGLGL ++K + + G + STP G+L Sbjct: 519 IGIPQDAIGRLFSMFMQVDASTARRYGGTGLGLAISKRLTEMMGGTIGVESTPGAGSLFW 578 Query: 804 IEIIFPLYDTSHPH 817 + F + +T+ P Sbjct: 579 FSLPFQMVETAPPQ 592 >gi|17228803|ref|NP_485351.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] gi|17130655|dbj|BAB73265.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] Length = 585 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 90/288 (31%), Positives = 148/288 (51%), Gaps = 35/288 (12%) Query: 553 CYSLTMHDISEWKQEKNKLS-------------HAKKIAEKESSHKSDFLARVSHEIRTP 599 CY LT ++ K+ ++L A++ AE+ S KS+FLA VSHEIRTP Sbjct: 287 CYPLTNAELELAKEVADQLGTAIAHATLYKELEAARQKAEEASRLKSEFLANVSHEIRTP 346 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYAN-YIDRSGNL---VLDIVNDLLDISKIESGKM 655 L +IGF ++I G +E N ++ + L +L+I+ND+LDI+KIE+GKM Sbjct: 347 LNGMIGFLKLILE------GMADDVEEKNQFLSEAHQLSLHLLNIINDILDIAKIEAGKM 400 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL--ADLRSVKQIALNILS 713 L P+ L+E S+ + ++ A K + R I+ + + + Q+ LNI+ Sbjct: 401 ELVCAPIKLEELFSDVDNFMRPQAEVKNLSFRMQLPPTSDEIVVQGNYQRLLQVMLNIVG 460 Query: 714 NAIHFTPSGGQIIISTT-------HTSNEEVILRVR--DTGVGMTNYELEKAMKPFGQIP 764 NAI FT GG + + N ++RVR DTG+G++ + +K + F Q+ Sbjct: 461 NAIKFTHEGGITVTADVVLKKGKLQEQNFPGMVRVRIADTGIGVSLDQQDKLFQLFSQVD 520 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLY 811 S+ + GTGLGL +++ +V+ G+ + +S G+ + PLY Sbjct: 521 GSRTRQYGGTGLGLAISQKLVETMGGEVHFYSLGEGLGSTVTFTVPLY 568 >gi|160886372|ref|ZP_02067375.1| hypothetical protein BACOVA_04382 [Bacteroides ovatus ATCC 8483] gi|315921766|ref|ZP_07918006.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|156108257|gb|EDO10002.1| hypothetical protein BACOVA_04382 [Bacteroides ovatus ATCC 8483] gi|313695641|gb|EFS32476.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 621 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 86/253 (33%), Positives = 137/253 (54%), Gaps = 15/253 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K+ + L AK+ AE+ KS FLA +SHEIRTPL AI+GFS +++ Sbjct: 381 DITELKETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSSLLEEAEDAEEK 440 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + YA I+ + L+L +++D+LD+SKIE+G ++ E V + +E + +Q+ A Sbjct: 441 HL----YATIIEENNKLLLQLISDILDLSKIEAGTFDIIPEQVDAQQLCNELLQSMQVRA 496 Query: 680 NEKRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 E+ + A +P + +D + Q+ LN ++NA+ FT S G I+I N EV Sbjct: 497 TEQ---VEILLAPELPELTFTSDKNRLYQVLLNFVTNALKFT-SEGSIVIDYRINGN-EV 551 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V+DTG+G+ + E F ++ N GTGLGLP+ +++V GK + S Sbjct: 552 RFSVQDTGMGIEPEKQEAIFTRFVKLNNFIA----GTGLGLPICQSIVTQLGGKIGVESE 607 Query: 798 PAKGTLIEIIFPL 810 P KG+ P+ Sbjct: 608 PGKGSCFWFTHPI 620 >gi|149189035|ref|ZP_01867324.1| Sensory box sensor histidine kinase/response regulator VieS [Vibrio shilonii AK1] gi|148837221|gb|EDL54169.1| Sensory box sensor histidine kinase/response regulator VieS [Vibrio shilonii AK1] Length = 779 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 83/271 (30%), Positives = 144/271 (53%), Gaps = 7/271 (2%) Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 +R+ + +P S + D++ Q+++ L A +AE+ + FLA +SHE+RTP+ Sbjct: 174 IRVTKRTIPNSEKMLTVVDDVTSEYQQRSALEKAHWLAEQAVQSRERFLATMSHELRTPI 233 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 ++IG E++ + + + + + + NL L +VND+LD SK++S ++L E Sbjct: 234 ASMIGLLELLSYENRNIADDYKL---KSLMSSAKNLQL-LVNDILDYSKLDSQGISLVEE 289 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFT 719 VS + + + + L + A E+ ++ T + ++ I IL D + QI N+LSNA+ FT Sbjct: 290 FVSYTDLLGDLVRLHEASARERGLVFETQWDSSEIEFILTDALRLSQIVNNVLSNAVKFT 349 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 G I T + + + + V DTG+G++ +LE PF Q +S + + GTGLGL Sbjct: 350 EQGK--IKVTVRATKQNISIIVDDTGIGISPDKLESIFDPFRQADDSIERKYGGTGLGLA 407 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + K + G I ST +GT + I PL Sbjct: 408 IVKKLTTLMSGYISINSTEGEGTSVMISLPL 438 >gi|170725399|ref|YP_001759425.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169810746|gb|ACA85330.1| PAS/PAC sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 793 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 77/264 (29%), Positives = 141/264 (53%), Gaps = 14/264 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 S KQ + AK+ A+K S +S+FL+ ++HE+RTP+ A+IG ++++ + + Sbjct: 252 SSAKQRSLEFKSAKEFAKKASQTQSEFLSMMNHELRTPMNAVIGSLDLLRLSK----QSS 307 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 +E S +++I+ND+LDI+KIESGKM L P S++E + + A + Sbjct: 308 ESMELIETATSSATNLMNILNDILDINKIESGKMQLEHSPFSINETIDGLVKSFLPSAQK 367 Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP---SGGQIIISTTHTSNEEV 737 K+I + ++ +P +++ D + +++ N++SNAI FT + G++ ++ + E Sbjct: 368 KQIQLNIKESSMVPSQVIGDEKKTRRVLYNLISNAIKFTDLKCTQGRVNLNCEVSQQSEE 427 Query: 738 ILRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +L ++ D G+G+ + K PF Q S GTGLGLP+ +++V GK Sbjct: 428 LLYIKLTIEDNGIGINESDQSKLFAPFTQAQKSVTREYGGTGLGLPICRSLVQQMGGKIT 487 Query: 794 IFSTPAKGT--LIEIIFPLYDTSH 815 + S G+ +E+ F L +T Sbjct: 488 LTSKEGVGSTFTVELPFSLIETEQ 511 >gi|117619875|ref|YP_855359.1| hybrid sensory histidine kinase BarA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561282|gb|ABK38230.1| sensor protein BarA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 903 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 76/239 (31%), Positives = 128/239 (53%), Gaps = 9/239 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + P +Y Sbjct: 276 ELDMAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQLLKTSL----TPSQTDYMQT 331 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S +L I+ND+LD SK+E+GK+ L P SL + ++E + L+ A++K++ + Sbjct: 332 IEKSARNLLGIINDILDFSKLEAGKLQLEHIPFSLRDTLNETMHLLGPSAHDKQLELSLQ 391 Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII----ISTTHTSNEEVILRVRDT 744 +P L D ++Q+ N+ NAI FT G + I + S + + +RDT Sbjct: 392 VDAEVPDYLTGDPMRLQQVLTNLTGNAIKFTEHGNVDVRIEQIGSASGSKVRLNVLIRDT 451 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 G+G++ + + + F Q +S R GTGLGL + + +V G+ S KG++ Sbjct: 452 GIGISEEQQRQLFQAFNQADSSISRRYGGTGLGLVITQKLVQQMGGQIRFESELGKGSV 510 >gi|186681707|ref|YP_001864903.1| integral membrane sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186464159|gb|ACC79960.1| integral membrane sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 709 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 139/259 (53%), Gaps = 9/259 (3%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + K +L A K A+ + KS FLA SHE+R PL II V+++ L + Sbjct: 361 VERLKAGAEELEIAWKEAKNANQIKSQFLATTSHELRNPLHTIINCIRVVED----GLCD 416 Query: 621 PRY--IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 R +E+ + + +L+I+NDLLDISKIE+GK+++ P+ L + + E I+L + Sbjct: 417 SREEEMEFLKRANETTIHLLNIINDLLDISKIEAGKLSVVITPLDLRQILLEVINLQSVN 476 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--EE 736 +K + ++ I AD +KQ+ +N++ NA FT +G I + +SN + Sbjct: 477 VQQKGLQLKCELDPQPIPIKADAAKLKQVLINVIGNATKFTDTGSITIATEIQSSNGKSQ 536 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V++ V DTG+G+ + K +PF + + + EGTGLGL +++ +++ G + S Sbjct: 537 VVVIVTDTGIGIDPNQQHKLFRPFVMVNGTTTRQFEGTGLGLAISRNLIELMGGSITLES 596 Query: 797 TPA-KGTLIEIIFPLYDTS 814 T +GT ++I PL D S Sbjct: 597 TGLHQGTTLKITLPLIDVS 615 >gi|311278812|ref|YP_003941043.1| signal transduction histidine kinase, nitrogen specific, NtrB [Enterobacter cloacae SCF1] gi|308748007|gb|ADO47759.1| signal transduction histidine kinase, nitrogen specific, NtrB [Enterobacter cloacae SCF1] Length = 612 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 92/361 (25%), Positives = 176/361 (48%), Gaps = 34/361 (9%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TVFLEQNTPSVMNHYLTE 515 I+E +DG+ ++R+G + + N A + GY +++++ +P+ T+F + H+ + Sbjct: 271 IIENAADGVIAVDRQGDVTTMNPAAEAITGYTLDELVGQPYATLFAD-------THFSSP 323 Query: 516 ILSLDLRQTLEKIT--LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN 569 IL L E + + ++ + L + ++ +S + D++ K+ + Sbjct: 324 ILD-TLAHGTEHLAQEVSFPGRDRTIELSVTTSRIHNASGELIGALVIFSDLTARKETQR 382 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L+ +++A + +A V+HE+R PLTAI G+ ++I+ Q P + EY + Sbjct: 383 RLAQTERLATL-----GELMAGVAHEVRNPLTAIRGYVQIIRQQTT----LPAHQEYLSV 433 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + + + ++ LLD S+ + ++ V L+ + EA+ LVQ + RI T Sbjct: 434 VLNEIDSINKVIQQLLDFSRPRQSQ----WQQVQLNALIGEALILVQTSGVQARIDFNTE 489 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 ++P I+AD +KQ+ LNIL NA+ + G I I T + + + + D G G+ Sbjct: 490 LDADLPTIVADRELLKQVLLNILINAVQAIGARGSIRIRTWRETATHLAIAIEDNGGGID 549 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +K PF S GTGLGL L++ +++A+ G + STP G +I P Sbjct: 550 IALQKKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVTSTPGCGATFTLILP 603 Query: 810 L 810 + Sbjct: 604 I 604 >gi|303247117|ref|ZP_07333392.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302491543|gb|EFL51428.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 997 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 125/258 (48%), Gaps = 9/258 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +++ L AK+ AE+ S KS+FLA +SHE+RTPL I G ++++ P Sbjct: 600 RRDAAALLSAKEAAERASRVKSEFLANMSHELRTPLNGIQGMTQLLAATSL----TPEQR 655 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EY S + ++ D+LD+S++ESGK+ L EP L + +S + E I Sbjct: 656 EYVRAALVSCRRLTRLLGDILDLSRVESGKLTLLPEPFRLADLLSAVAAAFMPACLEAGI 715 Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSN-EEVIL 739 T A +P IL D V+QI N++ NA+ FT +GG ++ S + Sbjct: 716 DWGTEVAPGVPEILFGDEGRVRQILYNLVGNAVKFTKTGGVRLEVWAGPVDASGCGSLFF 775 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTGVG+ ELE+ + F Q+ S R +G GLGL + + ++D G + S Sbjct: 776 AVTDTGVGIPAPELERIFEAFHQVERSFSRRFQGAGLGLAIVRRLLDLMQGTISVESEVG 835 Query: 800 KGTLIEIIFPLYDTSHPH 817 +GT PL H Sbjct: 836 RGTRCVCALPLIRPQPQH 853 >gi|228981285|ref|ZP_04141585.1| hypothetical protein bthur0002_44460 [Bacillus thuringiensis Bt407] gi|228778485|gb|EEM26752.1| hypothetical protein bthur0002_44460 [Bacillus thuringiensis Bt407] Length = 545 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 101/376 (26%), Positives = 182/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ +L++ Sbjct: 198 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEE--------YLDRLYYE 249 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 +H TEI+ L +E+I + K K + L + I++ F Sbjct: 250 SFHH--TEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 302 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 303 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 346 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + + + Sbjct: 347 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHM 405 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+GG + + Sbjct: 406 VLDNKAGEKEISLQVNVLKR-ASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDK 464 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 465 YNAYI-KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 523 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 524 VDSEVGEGTTFTVVLP 539 >gi|255530497|ref|YP_003090869.1| ATPase [Pedobacter heparinus DSM 2366] gi|255343481|gb|ACU02807.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM 2366] Length = 528 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 130/244 (53%), Gaps = 8/244 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + + +L AK++AE K +FLA +SHEIRTP+ IIG ++++K Sbjct: 137 ELEAYQKELIKAKELAETGKRIKDNFLANMSHEIRTPINGIIGIAQLLKKTEL----TDE 192 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 E N ++ S N +L ++ND+LD+SKIESGK ++ + + + L+++ + EK Sbjct: 193 QREMVNLLEISSNSLLGVINDVLDLSKIESGKFKINRTATDIIKICESVVDLLRIPSIEK 252 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVI 738 ++ ++ + + +P+ ILAD + QI +N++ NAI FT G ++ I +N ++ Sbjct: 253 KLDLKLALDSELPKMILADSLRLNQILMNLIGNAIKFTHQGSVTLKVEILNRKGNNLQLR 312 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG+G+ ++K + F Q I+ GTGLGL + K + G + S Sbjct: 313 FSVADTGIGIAKENIDKIFETFEQADEQTTIKFGGTGLGLSIVKNLAKLKGGTLEVISEE 372 Query: 799 AKGT 802 G+ Sbjct: 373 NIGS 376 >gi|222083203|ref|YP_002542606.1| multi-sensor hybrid histidine kinase [Agrobacterium vitis S4] gi|221738583|gb|ACM39421.1| multi-sensor hybrid histidine kinase [Agrobacterium vitis S4] Length = 1145 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 132/232 (56%), Gaps = 3/232 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ S +KSDFLA +SHE+RTPL + + ++++ + L +++A I SGN +L Sbjct: 470 ERASRYKSDFLANMSHELRTPLNSSLILAKLLADNADENL-TAEQVKFAQTIQSSGNDLL 528 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++ND+LD+SKIE+G + + EPV+++ V L A +K + + A ++P ++ Sbjct: 529 NLINDILDLSKIEAGHVEVSPEPVAINRTVDGLRQLFDPLAAQKGLNLSIEVAPDVPSVI 588 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + ++Q+ N+L+NA+ FT GQ+ + + ++ + V DTG+G+ + Sbjct: 589 ETDPQRLEQVLKNLLANAVKFTAE-GQVSLLVRPAGDAQIAISVVDTGIGIAEDQQRNIF 647 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q ++ + GTGLGL +++ +V G+ ++ S P G+ +I P Sbjct: 648 EAFHQADSTISRKFGGTGLGLSISRELVRLLGGRMHLQSRPGTGSTFTVIIP 699 >gi|295106963|emb|CBL04506.1| Signal transduction histidine kinase [Gordonibacter pamelaeae 7-10-1-b] Length = 748 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 130/263 (49%), Gaps = 9/263 (3%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y + + +EK++ A A++ S K++FL+R+SHEIRTP+ I+G + I + Sbjct: 326 YRMARRNTRLLAEEKDRAERAFAEAQQASLAKTEFLSRMSHEIRTPMNGIMGMT-AIALE 384 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G G R + S +L ++ND+LD+SKIESGK+ + EP L + + Sbjct: 385 SIGDDGKVRTC--LEKVTLSSEHLLSLINDILDMSKIESGKVEIKNEPFDLSTFIGSLAA 442 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + + A+E+ + T +P ++ D + Q+ N++ NA FTP GG + + Sbjct: 443 VFRTQASERNVAFDTVVEGEVPGHVVGDPLRLNQVVYNLMGNAFKFTPEGGSVTLRIERL 502 Query: 733 SNEE---VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 ++ E V LR V DTG G+ L+K F Q S + GTGLGL + K V+ Sbjct: 503 ADAEDGCVWLRFAVDDTGCGIEPEHLDKIFASFEQGDASVARKHGGTGLGLAITKRFVEL 562 Query: 788 NMGKFYIFSTPAKGTLIEIIFPL 810 G+ + S G+ + PL Sbjct: 563 MGGRIRVASVVGHGSSFAVDVPL 585 >gi|28901075|ref|NP_800730.1| sensor protein LuxQ [Vibrio parahaemolyticus RIMD 2210633] gi|260364054|ref|ZP_05776777.1| LuxQ, periplasmic family [Vibrio parahaemolyticus K5030] gi|260879926|ref|ZP_05892281.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio parahaemolyticus AN-5034] gi|260894602|ref|ZP_05903098.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio parahaemolyticus Peru-466] gi|50401015|sp|Q87GU5|LUXQ_VIBPA RecName: Full=Autoinducer 2 sensor kinase/phosphatase luxQ gi|28809588|dbj|BAC62563.1| sensor protein LuxQ [Vibrio parahaemolyticus RIMD 2210633] gi|308086409|gb|EFO36104.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio parahaemolyticus Peru-466] gi|308092294|gb|EFO41989.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio parahaemolyticus AN-5034] gi|308114073|gb|EFO51613.1| LuxQ, periplasmic family [Vibrio parahaemolyticus K5030] Length = 858 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 137/263 (52%), Gaps = 17/263 (6%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ + + + + A++ AEK + ++DFLA++SHEIRTP+ I+G ++++K+ Sbjct: 456 QDITTLIEAEKQSNLARREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKD------ 509 Query: 619 GNPRYIEYANYID---RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + E N ID SG +L ++ND+LD SKIE GK N+ P S + + ++ Sbjct: 510 -SVEAEEQKNQIDVLRHSGEHLLAVLNDILDFSKIEQGKFNIQKHPFSFADTMRTLENIY 568 Query: 676 QLYANEK--RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-- 731 + K ++I N+ I D + QI N++SNA+ FTPSG + + Sbjct: 569 RPICENKGVELVIENQLDGNV-EIFTDQVRLNQILFNLVSNAVKFTPSGCVRLHAELEQF 627 Query: 732 --TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 N +++ + DTG+G+ + +L++ +PF Q + G+GLGL + K +VD Sbjct: 628 YGADNSVLVVEISDTGIGIESDKLDEMFEPFVQEEATTTREYGGSGLGLTIVKNLVDMLD 687 Query: 790 GKFYIFSTPAKGTLIEIIFPLYD 812 G + S +GT + P+ D Sbjct: 688 GDVQVRSQKGQGTTFVVTLPVKD 710 >gi|331005922|ref|ZP_08329270.1| Response regulator receiver protein [gamma proteobacterium IMCC1989] gi|330420278|gb|EGG94596.1| Response regulator receiver protein [gamma proteobacterium IMCC1989] Length = 701 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 132/233 (56%), Gaps = 8/233 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ K+ + ++ AK AEK ++ KS FL+ +SHE+RTPL AI+GFS++ N P Sbjct: 273 DITAVKEAEKRVRKAKNEAEKANNAKSTFLSSMSHELRTPLNAIMGFSQLAVNNSSLPSS 332 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 E A I +G +L ++ND+LD++++E+GK+ L EPV + + + V A Sbjct: 333 QR---ESAKQIYSAGEHLLRLINDVLDLAQVEAGKITLMLEPVLPKRIIQDCFAFVSPLA 389 Query: 680 NEKRILIR--TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 E+ I + S A+ I + AD +KQ LNI++NA+ + G + +S N Sbjct: 390 VERGINLHFIDSDADTIC-VYADSMRLKQCLLNIINNAVKYNTDNGSVFVSLKQKKNSVC 448 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 I+ V DTG G+++ + ++ +PF ++ ++ EG+G+GL + K +V+ G Sbjct: 449 II-VEDTGSGISSEKQKQLFQPFNRL-GAEHSAVEGSGIGLVVTKELVEKMQG 499 >gi|260899517|ref|ZP_05907912.1| sensor protein TorS [Vibrio parahaemolyticus AQ4037] gi|308107606|gb|EFO45146.1| sensor protein TorS [Vibrio parahaemolyticus AQ4037] Length = 573 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 126/244 (51%), Gaps = 7/244 (2%) Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 + A+ AE+ S KS FLA +SHEIRTP+ ++G + ++ + NP YA I+ Sbjct: 42 AQARNEAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGL----NPIQKRYAEIIN 97 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 RSG +L I+ND+LD SKIE+G + + L + V + L+ A EK++L Sbjct: 98 RSGKTLLAILNDVLDYSKIEAGHLEIRRLGFDLHQMVEDTFQLMNSRAQEKQLLFSYHIE 157 Query: 692 NNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMT 749 +++ R D+ + Q+ N++ NAI FT G I +S +V+ V DTG+G++ Sbjct: 158 SDVSRYWKGDVTRISQVLNNLVGNAIKFTEDGEIDIYVSLNPEDESQVLFEVSDTGIGIS 217 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + F Q G GTGLGL ++K +V+A G + S +G+ P Sbjct: 218 KKDQKTLFDAFTQAEGGLNQIG-GTGLGLAISKRIVEAMGGVLEVDSEEGEGSRFWFSIP 276 Query: 810 LYDT 813 L ++ Sbjct: 277 LEES 280 >gi|30022663|ref|NP_834294.1| phosphate regulon sensor protein phoR [Bacillus cereus ATCC 14579] gi|29898222|gb|AAP11495.1| Phosphate regulon sensor protein phoR [Bacillus cereus ATCC 14579] Length = 587 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 101/376 (26%), Positives = 182/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ +L++ Sbjct: 240 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEE--------YLDRLYYE 291 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 +H TEI+ L +E+I + K K + L + I++ F Sbjct: 292 SFHH--TEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 344 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 345 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 388 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + + + Sbjct: 389 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHM 447 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+GG + + Sbjct: 448 VLDNKAGEKEISLQVNVLKR-ASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDK 506 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 507 YNAYI-KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTIT 565 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 566 VDSEVGEGTTFTVVLP 581 >gi|209525455|ref|ZP_03273995.1| GAF sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209494135|gb|EDZ94450.1| GAF sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1019 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 78/255 (30%), Positives = 130/255 (50%), Gaps = 9/255 (3%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L K AE + KS+FLA +SHEIRTP+ AI+GF +++K G + + + Y + I Sbjct: 523 LEEVAKRAEMANRAKSEFLANMSHEIRTPMNAILGFCDLLK----GLVEDDKQQSYLDAI 578 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 G ++ +++D+LD+SKIE+GK+ L + V L + E + A K + ++ +F Sbjct: 579 AAGGRALISLIDDILDLSKIEAGKLELEYHHVYLPILLQEIQQIFLPTAMAKGLSLQINF 638 Query: 691 ANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTG 745 N+P+I+A D ++QI NI+ NAI FT G I +++ + + V DTG Sbjct: 639 EPNVPKIIAFDEVRLRQILFNIVGNAIKFTEDGSVTISVRAQNCDDDSRITLEIMVADTG 698 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ + ++ + F Q R GTGLGL + + + G + S G++ Sbjct: 699 IGINPDQHQQIFEAFVQSEGQSNRRYGGTGLGLAITRRLTHLLGGTLTLDSQLGLGSVFT 758 Query: 806 IIFPLYDTSHPHDCI 820 FP + H I Sbjct: 759 FTFPDVQITQSHQLI 773 >gi|325263735|ref|ZP_08130468.1| putative non-motile and phage-resistance protein [Clostridium sp. D5] gi|324030773|gb|EGB92055.1| putative non-motile and phage-resistance protein [Clostridium sp. D5] Length = 651 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 79/260 (30%), Positives = 142/260 (54%), Gaps = 18/260 (6%) Query: 561 ISEWKQEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 + E QE+ + L H + E+ + KS FLA +SHE+RTPL +IIGF+ ++ ++ FG L Sbjct: 387 LEERVQERTQYLIHTIEELEEANKCKSAFLANMSHELRTPLNSIIGFASILHDELFGEL- 445 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA----VSEAIS-- 673 N + +Y I SGN +L +++D+L K++ H E +SL E + E +S Sbjct: 446 NEKQKQYIFVILDSGNHLLALIDDILHFVKLDR-----HVETISLKEVNVNDIIENVSMS 500 Query: 674 ---LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 LVQ + +++++I + + D + ++Q+ LN+LSNAI FTP +I I Sbjct: 501 VMPLVQ--SKDQKLVIDIKPEDTGLTAMWDAQKIRQLLLNMLSNAIKFTPENKEIRIQFR 558 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + V D G+G+ + +K PF Q+ +S +G GLGL + + +V+ + G Sbjct: 559 PANEAAYFISVIDNGIGIEDEFKKKVFHPFEQVNSSFTRNYQGVGLGLAICRELVEMHQG 618 Query: 791 KFYIFSTPAKGTLIEIIFPL 810 + ++ P+ G ++ ++ P+ Sbjct: 619 RIWLEDNPSGGLIVHVVLPV 638 >gi|320101873|ref|YP_004177464.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] gi|319749155|gb|ADV60915.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] Length = 1021 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 74/260 (28%), Positives = 138/260 (53%), Gaps = 10/260 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI++ ++ + +L A+ A + S KS FLA +SHEIRTP+ ++IG +++ Sbjct: 518 TSLDITQRQRLEQELQRARAEAIEASRVKSQFLANLSHEIRTPIASVIGLIDLLSTSE-- 575 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L E + + + + +VND+LD+SKIE+G+M L + P + + A++L+ Sbjct: 576 -LSEAEREETTSLLRLAAEHLSSMVNDVLDLSKIEAGRMTLEWSPTDPCQVIRAALNLLA 634 Query: 677 LYANEKRI-LIRTSFAN---NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + A + I L+ + P I D ++QI +N++SNAI F+ GG++ + Sbjct: 635 IQARARGIELVMEPLDQSEPSPPSICTDPTRLRQILVNLISNAIKFSERGGRVTVRYGPR 694 Query: 733 SNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 E+ +++ V D G+G+ ++E+ P+ Q + Q R GTGLGL +++ + + Sbjct: 695 IEEDSRWLVIDVVDQGIGIAPDQIERLFTPYTQADETSQRRHGGTGLGLAISRRLAEQLG 754 Query: 790 GKFYIFSTPAKGTLIEIIFP 809 G+ ++ S G+ + P Sbjct: 755 GELHVRSQVGVGSTFTLTLP 774 >gi|291571152|dbj|BAI93424.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 917 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 93/294 (31%), Positives = 160/294 (54%), Gaps = 36/294 (12%) Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQE------------KNKLSHAKKIAEKESSHKSDFL 589 R+ IKK+ + S T + +S QE +L AK+ AE + KS FL Sbjct: 389 RVDIKKIKETEQLSQTFNQMSSQLQELFETLEIRVEQRTAELRQAKENAEVANQAKSQFL 448 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQ----RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 A +SHE+RTPL AI+GF++++ Q L N R ++ I RSG +L ++ND+L Sbjct: 449 AHMSHELRTPLNAILGFTQLMIRQISLENNHNLNNFR--DHLYIIQRSGEHLLQLINDVL 506 Query: 646 DISKIESGKMNL---HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADL 701 D+SKIE+GK++L +F+ SL +++ E S+ K I +R+ N+PR + +D Sbjct: 507 DMSKIEAGKISLNINNFDLWSLLDSLEEMFSIRAASEGLKLIFVRSP---NLPRYINSDE 563 Query: 702 RSVKQIALNILSNAIHFTPSG-----GQIIISTTHTSNEE---VILR--VRDTGVGMTNY 751 + ++Q+ +N++ NA+ FT +G Q+I N + ++L+ V DTG G+ Sbjct: 564 QKLRQVLINLIGNAVKFTENGSVTLHSQVIDPPNQIDNPQPPPMVLQFTVEDTGPGIAPA 623 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 ++++ +PF Q ++ + +GTGLGLP+++ V G + ST G++ + Sbjct: 624 DIDQLFEPFLQTETGRKYQ-QGTGLGLPISQQFVQLMGGDISVSSTLGVGSVFK 676 >gi|322421487|ref|YP_004200710.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320127874|gb|ADW15434.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 1661 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 118/379 (31%), Positives = 185/379 (48%), Gaps = 36/379 (9%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT-VFLEQNTPS------- 507 S++E+ D + + GII N+ + L G+ ED++ PF F++Q Sbjct: 1299 SLIESNIDALMTTDPVGIITDVNQQMEALTGHSREDLIGTPFKRYFIDQERAEEGIRRVL 1358 Query: 508 ----VMNHYLTEILSLDLRQTLEKITLG--STKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561 V N+ LT LS R+T+ + +E KL + F++ D+ Sbjct: 1359 REGKVTNYELT-ALSKQGRETVVSYNAATFADREGKLQGV--------FAAA-----RDV 1404 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E K + L E + K FLA +SHE+RTPL AIIGF+ + + GPL Sbjct: 1405 TERKSFEKTLEEKGHEMENANLAKDRFLASMSHELRTPLNAIIGFTGTLLMRLPGPLTGD 1464 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + + +N I S +L ++NDLLD++KIESGK+ ++ EPVS V E + A Sbjct: 1465 QEKQLSN-ISTSAKHLLLLINDLLDLAKIESGKVEINPEPVSCRALVQEIAGTLTPMAEN 1523 Query: 682 KRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EV 737 K + + S A R + D R++ QI +N+ NAI FT G ++ I+ + + E EV Sbjct: 1524 KGL--KLSLAAEGDRTINTDRRALSQILINLAYNAIKFTQQG-EVRIAVSFDAGEGGDEV 1580 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V DTG+G+ E K + F Q+ +S R EGTGLGL L++ +V+ G + S Sbjct: 1581 EISVTDTGLGIKQEEQAKLFRAFTQVDSSSSRRFEGTGLGLYLSQKLVELLDGHIVMESE 1640 Query: 798 PAKGTLIEIIFPLYDTSHP 816 KG+ ++ P P Sbjct: 1641 YGKGSRFAVVLPARGVGIP 1659 >gi|46914623|emb|CAG21400.1| putative sensor histidine kinase/response regulator [Photobacterium profundum SS9] Length = 903 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 134/251 (53%), Gaps = 8/251 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + R L + ++ +Y Sbjct: 251 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTR---LSSSQH-DYLLT 306 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S N +L I+ND+LD SK+E+GK+ L P E++ E + L+ A+EK + + Sbjct: 307 IEKSANNLLTIINDILDFSKLEAGKLLLENIPFDFTESLDEVMRLLAPSAHEKGLELTLK 366 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTG 745 + IP ++ D ++Q+ N++ NA+ FT G + S +E I VRDTG Sbjct: 367 VDDRIPAGLIGDPLRIQQVVTNLIGNAVKFTERGNIDVSVELKASKDESIELQFTVRDTG 426 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 427 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVTQMGGEISLTSRLHQGSTFW 486 Query: 806 IIFPLYDTSHP 816 + T P Sbjct: 487 FSLSMLKTDLP 497 >gi|88812355|ref|ZP_01127605.1| sensor histidine kinase/response regulator GacS [Nitrococcus mobilis Nb-231] gi|88790362|gb|EAR21479.1| sensor histidine kinase/response regulator GacS [Nitrococcus mobilis Nb-231] Length = 686 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 80/240 (33%), Positives = 134/240 (55%), Gaps = 8/240 (3%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + +L A++ A + S KS FLA+VSHEIRTP+ I+GF+E++++ PL + ++ Sbjct: 268 QNAELDVARRRALEASKIKSQFLAKVSHEIRTPINGIVGFAELLQH---SPL-DAEQRDH 323 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-L 685 + I S +L I+ND+LD SKIE+GK+ + + ++V E I+L+ A K + L Sbjct: 324 VDTIKVSCANLLAIINDILDFSKIEAGKLEIDNMVFDVRDSVEEVITLLAPTAYSKGLEL 383 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVR 742 ++ +A+ P++ D ++QI N+L NAI FT G ++I+ + + + + Sbjct: 384 VQLIYADVPPKLNGDPVRIRQILTNLLHNAIKFTEQGRIVVRVILEEESAVDATLRITIN 443 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ + K + FGQ S GTGLGL ++K +V+ G S P KG+ Sbjct: 444 DTGIGLGENDHSKLFRAFGQAGGSPGSHCSGTGLGLIISKQLVEQMGGSIGFESEPQKGS 503 >gi|299146861|ref|ZP_07039929.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298517352|gb|EFI41233.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 621 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 86/253 (33%), Positives = 137/253 (54%), Gaps = 15/253 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K+ + L AK+ AE+ KS FLA +SHEIRTPL AI+GFS +++ Sbjct: 381 DITELKETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSSLLEEAEDAEEK 440 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + YA I+ + L+L +++D+LD+SKIE+G ++ E V + +E + +Q+ A Sbjct: 441 HL----YATIIEENNKLLLQLISDILDLSKIEAGTFDIIPEQVDAQQLCNELLQSMQVRA 496 Query: 680 NEKRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 E+ + A +P + +D + Q+ LN ++NA+ FT S G I+I N EV Sbjct: 497 TEQ---VEILLAPELPELTFTSDKNRLYQVLLNFVTNALKFT-SEGSIVIDYRINGN-EV 551 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V+DTG+G+ + E F ++ N GTGLGLP+ +++V GK + S Sbjct: 552 RFSVQDTGMGIEPEKQEAIFTRFVKLNNFIA----GTGLGLPICQSIVTQLGGKIGVESE 607 Query: 798 PAKGTLIEIIFPL 810 P KG+ P+ Sbjct: 608 PGKGSCFWFTHPI 620 >gi|298482954|ref|ZP_07001136.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298270926|gb|EFI12505.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 621 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 86/253 (33%), Positives = 137/253 (54%), Gaps = 15/253 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K+ + L AK+ AE+ KS FLA +SHEIRTPL AI+GFS +++ Sbjct: 381 DITELKETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSSLLEEAEDAEEK 440 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + YA I+ + L+L +++D+LD+SKIE+G ++ E V + +E + +Q+ A Sbjct: 441 HL----YATIIEENNKLLLQLISDILDLSKIEAGTFDIIPEQVDAQQLCNELLQSMQVRA 496 Query: 680 NEKRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 E+ + A +P + +D + Q+ LN ++NA+ FT S G I+I N EV Sbjct: 497 TEQ---VEILLAPELPELTFTSDKNRLYQVLLNFVTNALKFT-SEGSIVIDYRINGN-EV 551 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V+DTG+G+ + E F ++ N GTGLGLP+ +++V GK + S Sbjct: 552 RFSVQDTGMGIEPEKQEAIFTRFVKLNNFIA----GTGLGLPICQSIVTQLGGKIGVESE 607 Query: 798 PAKGTLIEIIFPL 810 P KG+ P+ Sbjct: 608 PGKGSCFWFTHPI 620 >gi|255013618|ref|ZP_05285744.1| putative two-component system sensor histidine kinase [Bacteroides sp. 2_1_7] Length = 364 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 94/276 (34%), Positives = 141/276 (51%), Gaps = 16/276 (5%) Query: 537 KLLSLRIIIKKLPFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 K + L I+ L SS L M +DISE K + ++ A EK KS FLA +SHE Sbjct: 98 KWIRLDIMEAGLEKSSPILLLMNYDISELKAMEERMLKA----EKSERLKSSFLANISHE 153 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 IR PL AI+GFS ++ ++ G L EY N I + L+L IVND+LD++K+ESG M Sbjct: 154 IRMPLNAIVGFSSLLGDEEDGELRQ----EYINLIQTNNELLLGIVNDVLDLAKLESGTM 209 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 F L + + E ++ Q+ L + ++ + +D +KQ+ N ++NA Sbjct: 210 TFDFMEFDLRQLIVETVASFQIKVPRGVALTYPASLDSF-LLRSDRIRLKQVLGNFITNA 268 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 I +T S G II+S N EV+L V DTG GM+ F + N +Q G G Sbjct: 269 IKYT-SIGSIILSYQAMEN-EVLLSVTDTGEGMSEEIKLHVFDRFYKGRNQKQ----GIG 322 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 LGL + + +V+ G+ + S KG+ P++ Sbjct: 323 LGLSICQNIVERLGGRIGVSSEQGKGSCFWCTLPIF 358 >gi|229019810|ref|ZP_04176612.1| hypothetical protein bcere0030_43100 [Bacillus cereus AH1273] gi|229026036|ref|ZP_04182419.1| hypothetical protein bcere0029_43210 [Bacillus cereus AH1272] gi|228735252|gb|EEL85864.1| hypothetical protein bcere0029_43210 [Bacillus cereus AH1272] gi|228741481|gb|EEL91679.1| hypothetical protein bcere0030_43100 [Bacillus cereus AH1273] Length = 545 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 102/378 (26%), Positives = 183/378 (48%), Gaps = 52/378 (13%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ L + + Sbjct: 198 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEEYLDRLY---------- 247 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 + + TEI+ L +E+I + K K + L + I++ F Sbjct: 248 YESFHHTEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 302 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 303 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 346 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + + + Sbjct: 347 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFRLNMGTVDMKGILEDIHM 405 Query: 674 LVQLYANEKRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 ++ A EK I ++ N + R+ + D +KQI +N+++NAI +TP+GG + + Sbjct: 406 VLDNKAGEKEISLQ---VNGLKRVSVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELLE 462 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 463 DKYNAYI-KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGT 521 Query: 792 FYIFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 522 ITVDSEVGEGTTFTVVLP 539 >gi|218233234|ref|YP_002369384.1| sensory box histidine kinase PhoR [Bacillus cereus B4264] gi|218161191|gb|ACK61183.1| sensory box histidine kinase PhoR [Bacillus cereus B4264] Length = 587 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 101/376 (26%), Positives = 182/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ +L++ Sbjct: 240 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEE--------YLDRLYYE 291 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 +H TEI+ L +E+I + K K + L + I++ F Sbjct: 292 SFHH--TEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 344 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 345 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 388 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + + + Sbjct: 389 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHM 447 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+GG + + Sbjct: 448 VLDNKAGEKEISLQVNVLKR-ASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDK 506 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 507 YNAYI-KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTIT 565 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 566 VDSEVGEGTTFTVVLP 581 >gi|330808999|ref|YP_004353461.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377107|gb|AEA68457.1| putative histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 1239 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 127/252 (50%), Gaps = 3/252 (1%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H + + +L A+ AE + KSDF+A VSHE+RTPLT I+ E + P Sbjct: 527 HQTEVLEAQAIELIQARNQAETANQAKSDFVATVSHELRTPLTLILAPLEQLSAATTPPA 586 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 ++ A R+ +++ VND+LD SK E+GK L PV L++ V + Sbjct: 587 DWHVQVDRAQ---RNALRLMNRVNDILDFSKAEAGKFELCPMPVDLNKTVGVLAEDAAMV 643 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A K + S + + D R ++I LN++SNAI FTP+GG + ++ T E Sbjct: 644 AEGKGCTLTCSIDPALGTVFLDPRHFEKILLNLVSNAIKFTPAGGTVHLTVTALDGERFE 703 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V+D+G+G+ +L + F QI NS GTG+GL L K +V+ G+ + S P Sbjct: 704 FAVQDSGIGIAPDKLPLLFQRFSQIDNSATRHYSGTGIGLALVKDLVELMGGEVGVNSEP 763 Query: 799 AKGTLIEIIFPL 810 +G+ + PL Sbjct: 764 GQGSCFFVRLPL 775 >gi|323691918|ref|ZP_08106170.1| hypothetical protein HMPREF9475_01033 [Clostridium symbiosum WAL-14673] gi|323504034|gb|EGB19844.1| hypothetical protein HMPREF9475_01033 [Clostridium symbiosum WAL-14673] Length = 935 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 75/245 (30%), Positives = 135/245 (55%), Gaps = 14/245 (5%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP---LGNPRYIEYANYIDRSG 634 AE E+ KS+FL+R+SHEIRTP+ AI+G + +I + P GN ++ + Sbjct: 553 AEAENKAKSEFLSRMSHEIRTPMNAIVGTTALIAMKDDIPESIKGNLAKLK------ATS 606 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L ++ND+LD+S+I++G +++ E SL + + E S++Q + + I + Sbjct: 607 QYLLGLINDILDMSRIDNGMLSIAEEDFSLQQLLDELCSMMQSQSKAREIALCCETGFRH 666 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV----ILRVRDTGVGMTN 750 + D +KQ+ +N++SNAI FTP GG + ++ T+ ++ + +V DTG+G+ Sbjct: 667 SDLKGDAIRLKQVLMNLVSNAIKFTPPGGTVHLTVEETAATDLQAVYLFKVTDTGIGIRA 726 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +LE+ + F Q + ++R +GTGLGLP+++ +V G + S +G+ PL Sbjct: 727 EDLERIFESFVQ-TGANRMRSQGTGLGLPISQNIVQLMGGTLRVKSKINEGSEFSFSIPL 785 Query: 811 YDTSH 815 H Sbjct: 786 SFGKH 790 >gi|309791780|ref|ZP_07686268.1| response regulator receiver sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308226186|gb|EFO79926.1| response regulator receiver sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 396 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 90/333 (27%), Positives = 166/333 (49%), Gaps = 15/333 (4%) Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT--LGSTKEE 536 R++ L G P+ + EQ + + YLT+ +D RQ +I LG +E+ Sbjct: 70 RSLPHLTGIPIIALTADASNEAREQALVAGCDGYLTK--PIDTRQLPNQIAEFLGGRREQ 127 Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 I + S S + +Q+ +LS A ++ + KS FLA +SHE+ Sbjct: 128 ------ISAESDERSLLRSYNQKLVERLEQQVRELSAANAALQELDTLKSQFLATLSHEL 181 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPLT++IG+ E+ G L P+ E + RS ++ +N+LL ++ S + Sbjct: 182 RTPLTSLIGYIELFDRGMLGTLSTPQK-EAMGVMRRSCTILSQQLNNLLYFQELRS--RS 238 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716 H P+++ + + +++ L + A++ I + I ILAD ++Q+ N++ NAI Sbjct: 239 FHLRPINMRDLLRQSLILFKERADQAGIRFEV-VGSEIAPILADTSGIEQLVRNLIDNAI 297 Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 FT +GG + + +I+RV D G+G+ + E+ PF ++ +S G+GL Sbjct: 298 KFTQAGGWVRV-VFQDEPSRLIMRVEDNGIGIPSEYHERIFLPFYRVDSSLASGQTGSGL 356 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GL + + +++A+ G+ + S P KG++ ++ P Sbjct: 357 GLAIVQHVINAHGGQITVRSIPGKGSVFTVVLP 389 >gi|295688289|ref|YP_003591982.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] gi|295430192|gb|ADG09364.1| integral membrane sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] Length = 565 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 117/222 (52%), Gaps = 7/222 (3%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S KS F+A +SHE+RTP+ ++G + + R + R EY + I +SG+ ++ I+ Sbjct: 197 SRSKSAFVAMMSHELRTPMNGVLGLAHALSTTRL----DVRQAEYVDMIIQSGDGLMTIL 252 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700 ND+LD+SKIE+GK+ L P + + L A K + + P +L D Sbjct: 253 NDILDLSKIEAGKLELEIAPFDIRALAGQIRLLWSETARGKGVELALEVDPATPAWLLGD 312 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 V+QI +N++SNA+ FT +G +++I E ++L V DTGVG+T + + PF Sbjct: 313 AARVRQILMNLVSNALKFTLAG-RVVIGVAPAEGE-IVLSVTDTGVGLTAEQRARLFAPF 370 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 Q S R GTGLGL + + + + G + S P G+ Sbjct: 371 AQGDRSTARRFGGTGLGLAICRHLAELMGGAIGVESEPGVGS 412 >gi|254410456|ref|ZP_05024235.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196182662|gb|EDX77647.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 2020 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 87/288 (30%), Positives = 133/288 (46%), Gaps = 60/288 (20%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK+ AE + KS+FLA +SHEIRTP+ A+IG + ++ + + ++AN I Sbjct: 1297 LHKAKREAEVANRAKSEFLAMMSHEIRTPMNAVIGMAGLLLDTEL----TSQQQDFANTI 1352 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI----LI 686 SG +L I+ND+LD SKIESGK+ L P + + EA+ LV A K + LI Sbjct: 1353 SSSGEALLTIINDILDFSKIESGKLELEEHPFDVHVCIEEALDLVASQATAKGLELAYLI 1412 Query: 687 RT-SFANNIPR----ILADLRSVKQIALNILSNAIHFTPSGGQII--------------- 726 FA P+ ++ D+ ++QI +N+LSNA+ FT G ++ Sbjct: 1413 EPFGFAQGQPQTPATVVGDITRLRQILVNLLSNAVKFTERGEVVVSVISRALSGEAGGAE 1472 Query: 727 -----------------------------ISTTHTSNE---EVILRVRDTGVGMTNYELE 754 + H E E+ VRDTG+G+ + Sbjct: 1473 GAEGAEGAEGAEGAEGAGGAGGAEGAGGAVPVEHLEAEQTYELQFTVRDTGIGIPRDRMN 1532 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + KPF Q+ S GTGLGL ++K + + G+ + S KG+ Sbjct: 1533 RLFKPFSQVDASMTRNYGGTGLGLAISKRLSERMGGRLWAESEVGKGS 1580 >gi|91224005|ref|ZP_01259268.1| sensor protein LuxQ [Vibrio alginolyticus 12G01] gi|91190916|gb|EAS77182.1| sensor protein LuxQ [Vibrio alginolyticus 12G01] gi|188039120|gb|ACD47122.1| LuxQ [Vibrio alginolyticus] Length = 858 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 137/263 (52%), Gaps = 17/263 (6%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ + + + + A+K AEK + ++DFLA++SHEIRTP+ I+G ++++K+ Sbjct: 456 QDITTLIEAEKQSNLARKEAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKD------ 509 Query: 619 GNPRYIEYANYID---RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + E N ID SG +L ++ND+LD SKIE GK N+ P S + + ++ Sbjct: 510 -SVETEEQNNQIDVLRHSGEHLLAVLNDILDFSKIEQGKFNIQKHPFSFTDTIRTLENIY 568 Query: 676 QLYANEKRI--LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-- 731 + K + +I N+ I D + QI N++SN++ FTPSG + + Sbjct: 569 RPICESKGVNLVIENKIDPNV-EIFTDQVRLNQILFNLVSNSVKFTPSGSVRLHAELEQF 627 Query: 732 --TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 N +++ + DTG+G+ + +L++ +PF Q + G+GLGL + K++VD Sbjct: 628 YGADNSVLVVEISDTGIGIESDKLDQMFEPFVQEEATTTREYGGSGLGLTIVKSLVDMLE 687 Query: 790 GKFYIFSTPAKGTLIEIIFPLYD 812 G + S GT I P+ D Sbjct: 688 GDVQVRSQKGLGTTFVITMPVKD 710 >gi|78043135|ref|YP_360865.1| sensory box histidine kinase [Carboxydothermus hydrogenoformans Z-2901] gi|77995250|gb|ABB14149.1| sensory box histidine kinase [Carboxydothermus hydrogenoformans Z-2901] Length = 449 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 97/370 (26%), Positives = 186/370 (50%), Gaps = 28/370 (7%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L +IL G+ +++R+G ++ N+ + LFG KP LE + + Sbjct: 104 RLTAILAGIKAGVMVLDRDGRVILVNKGLENLFGKLNFTGEPKPL---LEVIRNYELEKF 160 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 L E L+ +L++ +I E LL S I+I P + + ++ + + Sbjct: 161 LKEALA-NLKEMTREI-------EFLLPNSKTILIHVTPLKDEHDQKVGLVAVF----DD 208 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANY 629 ++ +K+ +S+F+A VSHE+RTPLT+I GF E + + G L + + + Sbjct: 209 ITEERKL----EKMRSEFIANVSHELRTPLTSIKGFLETLLD---GALEDKTIAKHFLQI 261 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 ++ + +++DLL +SKIE+ K++ +P+ L E + + L + EK + S Sbjct: 262 MNSETERLTRLIDDLLSLSKIEAKKVDFAPKPLMLQELIQKMKLLFKSRLEEKELSFIIS 321 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVILRVRDTGVGM 748 N+P +LAD + Q+ +N++ NAI +TP+GG+I + + S EV+ V+DTG+G+ Sbjct: 322 LPENLPLVLADGDMISQVLINLIDNAIKYTPAGGKIEVTAAVKGSWVEVV--VKDTGIGI 379 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 ++ + F ++ ++ GTGLGL + K +++ + GK ++ S +G+ Sbjct: 380 PEESQKRIFERFYRVDKARSRELGGTGLGLAIVKHIIELHNGKVWVKSKVGEGSAFGFTI 439 Query: 809 PLYDTSHPHD 818 P+ T + Sbjct: 440 PIAQTVQKEE 449 >gi|77360094|ref|YP_339669.1| two-component member protein [Pseudoalteromonas haloplanktis TAC125] gi|76875005|emb|CAI86226.1| putative two-component member protein [Pseudoalteromonas haloplanktis TAC125] Length = 1107 Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 79/254 (31%), Positives = 137/254 (53%), Gaps = 10/254 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K+ + KL HAK AE+ ++ K F+A +SHEIRTP+ AIIGFS+++ + PL Sbjct: 513 DITERKEYEAKLEHAKLQAEEAANAKQSFMANMSHEIRTPMNAIIGFSDLLMDT---PLS 569 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV--SLDEAVSEAISLVQL 677 + ++ ++ + +L ++N++LD +K+E GK+ + EPV +L + IS L Sbjct: 570 KEQQ-KHLVTVNNAARSLLRLLNEILDSAKLERGKLTI--EPVHFNLKPVIDSIISTFWL 626 Query: 678 YANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A +K + + + ++ D ++QI N++ NAI FT G + ++ + T N Sbjct: 627 EAKKKNLNLTLNINKSVSTAYYGDPDRLRQILTNLIGNAIKFTEQGA-VTVTVSTTQNNH 685 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + V+DTG+G+ ++ +PF Q + R GTGLG ++K +V+ G + S Sbjct: 686 LFFEVQDTGIGIAKDRIKAVFQPFVQADGTTTRRFGGTGLGTTISKQLVELMHGSIDLVS 745 Query: 797 TPAKGTLIEIIFPL 810 KG+ P Sbjct: 746 EVDKGSCFYFSLPF 759 Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust. Identities = 18/35 (51%), Positives = 24/35 (68%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 +L +ILE DGI I+ +GIILS N A SK+ G+ Sbjct: 272 RLNAILETAIDGIVTIDHQGIILSFNDAASKILGW 306 >gi|291618633|ref|YP_003521375.1| BarA [Pantoea ananatis LMG 20103] gi|291153663|gb|ADD78247.1| BarA [Pantoea ananatis LMG 20103] Length = 928 Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 135/241 (56%), Gaps = 16/241 (6%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL ++GF+ +++K PL + +Y Sbjct: 297 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVLGFTRQMLKT----PLRTTQR-DYML 351 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS N +L I+ND+LD S++E+GK+ L P L + E + L+ A+EK + + Sbjct: 352 TIERSANNLLSIINDVLDFSRLEAGKLMLESIPFPLRATLDETLVLLAPSAHEKGLELTV 411 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG------QIIISTTHTSNEEVILRV 741 N++P ++ D ++QI +N++ NAI FT G Q I+ TH E+ ++V Sbjct: 412 VCDNSVPDNVIGDALRLQQILINLMGNAIKFTEKGTINLRVEQHTITATHV---ELEIQV 468 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RDTG+G++ + + + F Q S R G+GLGL + + +V G+ S G Sbjct: 469 RDTGIGISEEQQAQLFQAFRQADASISRRHGGSGLGLVITQKLVREMNGEITFVSRQNHG 528 Query: 802 T 802 + Sbjct: 529 S 529 >gi|239908416|ref|YP_002955158.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239798283|dbj|BAH77272.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 730 Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 98/369 (26%), Positives = 177/369 (47%), Gaps = 23/369 (6%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS---VMNHYL 513 IL ++ + +I+REG + NRA S + GY ++++ P T P + + + Sbjct: 366 ILSHVNEALWVIDREGHVRLCNRAGSDMLGYAPQELVGLPATSLFPPGDPLGVFLASAPV 425 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEK 568 TE+L+ LEK G + + + + + + C ++ DI+E ++ Sbjct: 426 TELLASGGMTGLEKTLCGKDGRTLAVLVSLALLRGQDAGEEGVVCLAM---DITE-RKRA 481 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 + L+ A+K AE S K++FLA +SHE+RTPL ++G E +++ L P Sbjct: 482 DDLARARKAAEAVSRAKTEFLAVLSHELRTPLNIMLGMLEHVQDC---DLPAPTQAGLVQ 538 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + +SG +LD++ +LD + +E+ ++ L +P S E A K + + Sbjct: 539 AV-KSGQTMLDVIAAMLDYASLEANRVVLRRQPFSPGLVAMEVTGRFTDVAKAKGVTLAV 597 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEE-----VILRV 741 + ++P ++ D + Q N+LSNA+ FT G ++ + T + ++ V Sbjct: 598 DISPDLPATLIGDAARLTQALANLLSNAVRFTMGGEARLFLGGRRTPGPDGEVWRLLAMV 657 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+T+ +LE +PF Q S R G GLGL + + +V G + S P +G Sbjct: 658 SDTGMGVTDAKLEYIFEPFTQEDASASRRFGGLGLGLAITRRLVGLMGGTICMDSRPGQG 717 Query: 802 TLIEIIFPL 810 T + + PL Sbjct: 718 TDVYLTVPL 726 >gi|83312294|ref|YP_422558.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82947135|dbj|BAE51999.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 601 Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 122/224 (54%), Gaps = 10/224 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP-LGNPRYIEYANYIDRSGNLVLDIVND 643 KSDFLA +SHE+RTP+ +I+GF ++ P L R I + R+G +L IV+D Sbjct: 219 KSDFLAVMSHELRTPIASILGF---VQLAGMAPTLARARAI--LPKVGRAGRHLLAIVDD 273 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLR 702 +LDIS+IE+GK L P SLDE + L + A EK + + +++ P +L D Sbjct: 274 ILDISRIEAGKYALDLAPFSLDEMLGHVEDLTRPLAEEKGVELSLQHSDDAPALLVGDAL 333 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---RVRDTGVGMTNYELEKAMKP 759 + QI +N++ NA+ FT G + T +E +L V D+G+G+ LE +P Sbjct: 334 RLGQILINLVGNAVKFTSRGAVHVTVRTMPIDEISLLLECEVADSGIGIPADRLEAIFEP 393 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 F Q S R GTGLGL + + +V+ G+ + S P +G++ Sbjct: 394 FTQGDGSTTRRYGGTGLGLSVCRTLVEMMGGEITVESQPGRGSV 437 >gi|328470975|gb|EGF41886.1| sensor protein LuxQ [Vibrio parahaemolyticus 10329] Length = 858 Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 137/263 (52%), Gaps = 17/263 (6%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ + + + + A++ AEK + ++DFLA++SHEIRTP+ I+G ++++K+ Sbjct: 456 QDITTLIEAEKQSNLARREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKD------ 509 Query: 619 GNPRYIEYANYID---RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + E N ID SG +L ++ND+LD SKIE GK N+ P S + + ++ Sbjct: 510 -SVEAEEQKNQIDVLRHSGEHLLAVLNDILDFSKIEQGKFNIQKHPFSFADTMRTLENIY 568 Query: 676 QLYANEK--RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-- 731 + K ++I N+ I D + QI N++SNA+ FTPSG + + Sbjct: 569 RPICENKGVELVIENQLDGNV-EIFTDQVRLNQILFNLVSNAVKFTPSGCVRLHAELEQF 627 Query: 732 --TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 N +++ + DTG+G+ + +L++ +PF Q + G+GLGL + K +VD Sbjct: 628 YGADNSVLVVEISDTGIGIESDKLDEMFEPFVQEEATTTREYGGSGLGLTIVKNLVDMLD 687 Query: 790 GKFYIFSTPAKGTLIEIIFPLYD 812 G + S +GT + P+ D Sbjct: 688 GDVQVRSQKGQGTTFVVTLPVKD 710 >gi|297183277|gb|ADI19415.1| signal transduction histidine kinase [uncultured Pseudomonadales bacterium HF0500_12O04] Length = 632 Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 130/246 (52%), Gaps = 9/246 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A++ AE+ + K+DFLA +SHE+RTP+ ++G ++++ R EYA Sbjct: 249 QLIQAREEAERANRAKTDFLAMMSHELRTPMNGVLGMLQLLETTRM----TEEQAEYAAL 304 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 S +L ++ND+LD S+IE + L P +L E VS Q A ++ + ++ + Sbjct: 305 ASESTEHLLKVINDILDFSRIERSALELEHIPFNLAELVSNCAQAFQHNAAQRGLHLQLT 364 Query: 690 FANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDT 744 + + + L D ++QI +N++ NA+ FT G I + ++I VRD+ Sbjct: 365 IPDGLQDLPALGDPTRIRQILVNLIGNALKFTEHGQVSIEPQWQRLDHQLIWFSCAVRDS 424 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+++ +L+ F Q +S R GTGLGLP+A+ + + G + S A+G++ Sbjct: 425 GIGISSEKLDSMFTAFQQADSSISRRYGGTGLGLPIARTLAERMGGTLHALSEEAQGSVF 484 Query: 805 EIIFPL 810 + PL Sbjct: 485 TLEIPL 490 >gi|237716456|ref|ZP_04546937.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229444103|gb|EEO49894.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 1464 Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 130/248 (52%), Gaps = 7/248 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG-FSEVIKNQRFGPLGNPRYIEYAN 628 K+ + I +K S K F +SHE+RTPLT I G E+ + ++ P G ++Y + Sbjct: 918 KMKNDIYIEQKVSEMKIKFFTNISHELRTPLTLIKGPIQELREREKLSPKG----LQYVD 973 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 ++++ N +L +VN +LD KI++GKM LH + +E ++ ++ + E I Sbjct: 974 LMEKNTNQMLQLVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTF 1033 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVG 747 + + AD + + NI+SNA FT SGG I I+T T + + +RV D GVG Sbjct: 1034 QLPDEPIMVWADKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVG 1093 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +L + + F Q N++ +GTG+GL L+K +V+ + G+ S +G + I+ Sbjct: 1094 IPQNKLTEIFERFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVF-IV 1152 Query: 808 FPLYDTSH 815 L D H Sbjct: 1153 ELLMDKEH 1160 >gi|192360747|ref|YP_001981263.1| two-component hybrid sensor and regulator [Cellvibrio japonicus Ueda107] gi|190686912|gb|ACE84590.1| two-component hybrid sensor and regulator [Cellvibrio japonicus Ueda107] Length = 758 Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 134/246 (54%), Gaps = 9/246 (3%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE-VIKNQRFGPLGNPRYIEY 626 K++L+ AK+ AE S KS+FL+ +SHE+RTPL AIIG++E VI+ + + R+++ Sbjct: 385 KDRLAIAKRKAEDASQAKSEFLSLMSHELRTPLQAIIGYTELVIEELKLD--SDDRHVKD 442 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ--LYANEKRI 684 + +G +L ++N +LD++KIESG M+L V L V EA V L +E ++ Sbjct: 443 LERVIHNGERLLRLINGVLDMAKIESGSMDLDLTEVRLSSLVDEARGTVAPLLEKSEIQV 502 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + ++P+ AD + I +N+L NA F P G ++ + E++ + V DT Sbjct: 503 VQEVDDGESLPK--ADPEKLLHILINLLGNASKFAPKG--VVSIKAYHRAEKIYISVADT 558 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+GM+ + + PF Q + + +G+GLGL + + + + G + S KG+ Sbjct: 559 GIGMSPEQQQHIFDPFRQADSGTTRKYQGSGLGLSITRQLCELMGGSIRVESELGKGSTF 618 Query: 805 EIIFPL 810 + PL Sbjct: 619 IVELPL 624 >gi|192359994|ref|YP_001980883.1| MmoS [Cellvibrio japonicus Ueda107] gi|190686159|gb|ACE83837.1| MmoS [Cellvibrio japonicus Ueda107] Length = 803 Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 84/245 (34%), Positives = 127/245 (51%), Gaps = 11/245 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+EK + K AE S KS FLA +SHEIRTP+ +IG +++++ PL + Sbjct: 258 KEEKLETRRQKNAAEDASRAKSQFLATMSHEIRTPMNGVIGMLDMLRDT---PLDENQK- 313 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 Y + I RSG +L I+ND+LD SKIE+GKM L LD+ V I L AN++ I Sbjct: 314 HYIDVIHRSGETLLSIINDILDYSKIEAGKMQLEEMVFELDDLVENCIQLFGATANKRNI 373 Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNE-EVIL 739 + ++PR L D ++QI +N+L NA FT G ++ + T E ++L Sbjct: 374 ELFGGLNPDVPRRLRGDPTRLRQIIINLLGNAFKFTEEGFVSLEVGLDNTALQAEGRLML 433 Query: 740 R--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 R V+D+G+G+ F Q S + GTGLGL + K++ + G+ + S Sbjct: 434 RFVVQDSGIGIDPNSASNLFDSFNQADASTTRKYGGTGLGLAICKSLAELMGGRIGVKSA 493 Query: 798 PAKGT 802 +G Sbjct: 494 KGEGA 498 >gi|327395012|dbj|BAK12434.1| sensor protein BarA BarA [Pantoea ananatis AJ13355] Length = 922 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 135/241 (56%), Gaps = 16/241 (6%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL ++GF+ +++K PL + +Y Sbjct: 291 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVLGFTRQMLKT----PLRTTQR-DYML 345 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS N +L I+ND+LD S++E+GK+ L P L + E + L+ A+EK + + Sbjct: 346 TIERSANNLLSIINDVLDFSRLEAGKLMLESIPFPLRATLDETLVLLAPSAHEKGLELTV 405 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG------QIIISTTHTSNEEVILRV 741 N++P ++ D ++QI +N++ NAI FT G Q I+ TH E+ ++V Sbjct: 406 VCDNSVPDNVIGDALRLQQILINLMGNAIKFTEKGTINLRVEQHTITATHV---ELEIQV 462 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RDTG+G++ + + + F Q S R G+GLGL + + +V G+ S G Sbjct: 463 RDTGIGISEEQQAQLFQAFRQADASISRRHGGSGLGLVITQKLVREMNGEITFVSRQNHG 522 Query: 802 T 802 + Sbjct: 523 S 523 >gi|319643445|ref|ZP_07998068.1| sensor protein [Bacteroides sp. 3_1_40A] gi|317384850|gb|EFV65806.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 632 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 79/239 (33%), Positives = 132/239 (55%), Gaps = 12/239 (5%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK+ AE+ + K+ FLA +SHEIRTPL AI+GFS V+ + P +Y + I ++ Sbjct: 400 AKEKAEESNRLKTAFLANMSHEIRTPLNAIVGFSSVLVSDDSSPAEKE---QYCDIIQKN 456 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 +L+L ++ND+LDIS++ESG++ +E + E A+S V+ Y + L F Sbjct: 457 SDLLLHLINDILDISRMESGRIKFVWEECDVVELCQTALSTVE-YGRKTSALFL--FETP 513 Query: 694 IPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 +P ++ D + +KQ+ +N+LSNA FTPSG + ++++ L V DTG G+ Sbjct: 514 VPSLVVKTDAQRLKQVLINLLSNAAKFTPSGSIKLTVAIDKQHQQLELSVSDTGCGIPPD 573 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + EK + F ++ Q GTGLGL +++ +++ GK ++ +G PL Sbjct: 574 KSEKVFERFEKLNEYSQ----GTGLGLAISRLIIENLGGKIWVDKDYTEGARFVFTHPL 628 >gi|260173495|ref|ZP_05759907.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|293372779|ref|ZP_06619160.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] gi|292632288|gb|EFF50885.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] Length = 606 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 86/253 (33%), Positives = 137/253 (54%), Gaps = 15/253 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K+ + L AK+ AE+ KS FLA +SHEIRTPL AI+GFS +++ Sbjct: 366 DITELKETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSSLLEEAEDAEEK 425 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + YA I+ + L+L +++D+LD+SKIE+G ++ E V + +E + +Q+ A Sbjct: 426 HL----YATIIEENNKLLLQLISDILDLSKIEAGTFDIIPEQVDAQQLCNELLQSMQVRA 481 Query: 680 NEKRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 E+ + A +P + +D + Q+ LN ++NA+ FT S G I+I N EV Sbjct: 482 TEQ---VEILLAPELPELTFTSDKNRLYQVLLNFVTNALKFT-SEGSIVIDYRINGN-EV 536 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V+DTG+G+ + E F ++ N GTGLGLP+ +++V GK + S Sbjct: 537 RFSVQDTGMGIEPEKQEAIFTRFVKLNNFIA----GTGLGLPICQSIVTQLGGKIGVESE 592 Query: 798 PAKGTLIEIIFPL 810 P KG+ P+ Sbjct: 593 PGKGSCFWFTHPI 605 >gi|182413970|ref|YP_001819036.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177841184|gb|ACB75436.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 635 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 87/252 (34%), Positives = 140/252 (55%), Gaps = 7/252 (2%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L A + AE S KS+FLA +SHEIRTPL II ++++ QR R E+A Sbjct: 232 RELQLASQQAEAASRAKSEFLANMSHEIRTPLNGIIASADLMI-QRADLPAEAR--EHAR 288 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +SG+L+L+++ D+LD SKIE+G++ L L+ V++ ++L+ A + ++ Sbjct: 289 LITQSGDLLLNLLGDILDFSKIEAGQITLEDHVFELESTVTDTVALLASRAATAAVQLQV 348 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDT 744 + A + R AD ++Q+ LN+L NA+ FTP+GG++ IS T + V +RDT Sbjct: 349 AVAPAVARNFEADSYRLRQVLLNLLGNAVKFTPAGGRVQISVTAAGEGDPRPVRFEIRDT 408 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+GM L + + F Q +S R GTGLGL ++ +V+ G+ + S P +G++ Sbjct: 409 GIGMDETTLRRIFERFTQADSSTTRRYGGTGLGLAISFRLVEMMGGRLAVESAPGQGSIF 468 Query: 805 EIIFPLYDTSHP 816 PL P Sbjct: 469 YFTLPLRPVDAP 480 >gi|206969804|ref|ZP_03230758.1| sensory box histidine kinase PhoR [Bacillus cereus AH1134] gi|206735492|gb|EDZ52660.1| sensory box histidine kinase PhoR [Bacillus cereus AH1134] Length = 587 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 101/376 (26%), Positives = 182/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ +L++ Sbjct: 240 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEE--------YLDRLYYE 291 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 +H TEI+ L +E+I + K K + L + I++ F Sbjct: 292 SFHH--TEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 344 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 345 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 388 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + + + Sbjct: 389 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHM 447 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+GG + + Sbjct: 448 VLDNKAGEKEISLQVNVLKR-ASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDK 506 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 507 YNAYI-KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHQGTIT 565 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 566 VDSEVGEGTTFTVVLP 581 >gi|75909242|ref|YP_323538.1| GAF sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75702967|gb|ABA22643.1| GAF sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] Length = 585 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 88/288 (30%), Positives = 148/288 (51%), Gaps = 35/288 (12%) Query: 553 CYSLTMHDISEWKQEKNKLS-------------HAKKIAEKESSHKSDFLARVSHEIRTP 599 CY LT ++ K+ ++L A++ AE+ S KS+FLA VSHEIRTP Sbjct: 287 CYPLTNAELELAKEVADQLGTAIAHATLYKELEAARQKAEEASRLKSEFLANVSHEIRTP 346 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYAN-YIDRSGNL---VLDIVNDLLDISKIESGKM 655 L +IGF ++I G +E N ++ + L +L+I+ND+LDI+KIE+GKM Sbjct: 347 LNGMIGFLKLILE------GMADDVEEKNQFLSEAHQLSLHLLNIINDILDIAKIEAGKM 400 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL--ADLRSVKQIALNILS 713 L P+ L+E S+ + ++ A K + R I+ + + + Q+ LNI+ Sbjct: 401 ELVCAPIKLEELFSDVDNFMRPQAEVKNLSFRMQLPPTSDEIVVQGNYQRLLQVMLNIVG 460 Query: 714 NAIHFTPSGG-----QIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIP 764 NAI FT GG +++ + V +R+ DTG+G++ + +K + F Q+ Sbjct: 461 NAIKFTHEGGITVSADVVLKKGKLQEQHFPGMVRVRIADTGIGVSLDQQDKLFQLFSQVD 520 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLY 811 S+ + GTGLGL +++ +V+ G+ + +S G+ + PLY Sbjct: 521 GSRTRQYGGTGLGLAISQKLVETMGGEVHFYSLGEGLGSTVTFTVPLY 568 >gi|294645048|ref|ZP_06722774.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|292639554|gb|EFF57846.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] Length = 1461 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 130/248 (52%), Gaps = 7/248 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG-FSEVIKNQRFGPLGNPRYIEYAN 628 K+ + I +K S K F +SHE+RTPLT I G E+ + ++ P G ++Y + Sbjct: 915 KMKNDIYIEQKVSEMKIKFFTNISHELRTPLTLIKGPIQELREREKLSPKG----LQYVD 970 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 ++++ N +L +VN +LD KI++GKM LH + +E ++ ++ + E I Sbjct: 971 LMEKNTNQMLQLVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTF 1030 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVG 747 + + AD + + NI+SNA FT SGG I I+T T + + +RV D GVG Sbjct: 1031 QLPDEPIMVWADKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVG 1090 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +L + + F Q N++ +GTG+GL L+K +V+ + G+ S +G + I+ Sbjct: 1091 IPQNKLTEIFERFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVF-IV 1149 Query: 808 FPLYDTSH 815 L D H Sbjct: 1150 ELLMDKEH 1157 >gi|254413405|ref|ZP_05027176.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180025|gb|EDX75018.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 689 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 74/249 (29%), Positives = 133/249 (53%), Gaps = 18/249 (7%) Query: 578 AEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 EKE K+DF++ VSHE+RTPLT+++GF+++IK ++ + P+ I R+ Sbjct: 194 VEKEVDQMKTDFISTVSHELRTPLTSVLGFTKIIK-KKLEDVIFPQVQTDNKKIQRTVRQ 252 Query: 637 VLD--------------IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 V D ++ND+LDI+K+E+GK++ + +P+ + E + AI+ K Sbjct: 253 VKDNVTIIVSEGERLTALINDVLDIAKMEAGKVDWNMQPLLVHEIIERAIAATSSLFETK 312 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 I +P I D + Q+ +N++SNA+ FT G I + E+I+ V Sbjct: 313 HIQFIKKVETELPEISGDKDRLIQVLINLISNAVKFTQKG--TITCRATQRHSEIIISVI 370 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ + + + F Q+ ++ + +GTGLGLP+ K +V+ + G+ ++ S KG+ Sbjct: 371 DTGMGIAPADQPQVFEKFKQVGDTLTDKPKGTGLGLPICKQIVEHHGGRIWVESEFKKGS 430 Query: 803 LIEIIFPLY 811 P++ Sbjct: 431 TFSFTLPIH 439 >gi|157144825|ref|YP_001452144.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Citrobacter koseri ATCC BAA-895] gi|157082030|gb|ABV11708.1| hypothetical protein CKO_00552 [Citrobacter koseri ATCC BAA-895] Length = 948 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 81/259 (31%), Positives = 132/259 (50%), Gaps = 7/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKAL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVQCDGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 ++VRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IQVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHPH 817 G+ + PLY +P Sbjct: 679 GMGSQFTLRIPLYGAQYPQ 697 >gi|332142241|ref|YP_004427979.1| sensory box histidine kinase/response regulator [Alteromonas macleodii str. 'Deep ecotype'] gi|327552263|gb|AEA98981.1| sensory box histidine kinase/response regulator [Alteromonas macleodii str. 'Deep ecotype'] Length = 1070 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 78/242 (32%), Positives = 130/242 (53%), Gaps = 7/242 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q++ L + K + KSDFLAR+SHEIRTPL AIIG +++ + I Sbjct: 414 RQQRKTLDTLTQDLRKATKAKSDFLARMSHEIRTPLNAIIGLTKLSQRAAEDKEQQTNLI 473 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I+ + +L I+ND+LD SKIE+GK+++ +LD V++ I L A EK I Sbjct: 474 Q----IEGASQTLLSIINDILDFSKIEAGKLDIESTQFNLDALVNQTIRLHLARAQEKHI 529 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL--RV 741 + + ++P ++ D ++Q+ N+LSNA+ FT G + +E++ L V Sbjct: 530 ELIQHISRDVPLNLIGDPLRIQQVLNNLLSNALKFTEDGLISVSVRCEQVSEDIQLEFEV 589 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +D+GVG+++ +PF Q + R GTGLGL + K + G+ ++ S KG Sbjct: 590 KDSGVGLSSAHQALLFQPFNQGDETISRRYGGTGLGLAICKQLTALMGGEIWVESQLGKG 649 Query: 802 TL 803 ++ Sbjct: 650 SI 651 >gi|160882825|ref|ZP_02063828.1| hypothetical protein BACOVA_00787 [Bacteroides ovatus ATCC 8483] gi|156111849|gb|EDO13594.1| hypothetical protein BACOVA_00787 [Bacteroides ovatus ATCC 8483] Length = 1464 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 130/248 (52%), Gaps = 7/248 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG-FSEVIKNQRFGPLGNPRYIEYAN 628 K+ + I +K S K F +SHE+RTPLT I G E+ + ++ P G ++Y + Sbjct: 918 KMKNDIYIEQKVSEMKIKFFTNISHELRTPLTLIKGPIQELREREKLSPKG----LQYVD 973 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 ++++ N +L +VN +LD KI++GKM LH + +E ++ ++ + E I Sbjct: 974 LMEKNTNQMLQLVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTF 1033 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVG 747 + + AD + + NI+SNA FT SGG I I+T T + + +RV D GVG Sbjct: 1034 QLPDEPIMVWADKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVG 1093 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +L + + F Q N++ +GTG+GL L+K +V+ + G+ S +G + I+ Sbjct: 1094 IPQNKLTEIFERFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVF-IV 1152 Query: 808 FPLYDTSH 815 L D H Sbjct: 1153 ELLMDKEH 1160 >gi|238751207|ref|ZP_04612701.1| Sensor kinase protein rcsC [Yersinia rohdei ATCC 43380] gi|238710481|gb|EEQ02705.1| Sensor kinase protein rcsC [Yersinia rohdei ATCC 43380] Length = 949 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 86/261 (32%), Positives = 134/261 (51%), Gaps = 7/261 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DIS + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 444 VLVDISSRVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 502 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 503 PQGVDRLVTAMN---NSSDLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYL 559 Query: 677 LYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +KR+ + ++PR+ L D ++Q+ N+L+NAI FT +G II Sbjct: 560 PLVVKKRLGLYCFIEPDVPRLMLGDAVRLQQVISNLLNNAIKFTDTG--CIILQVRVRGY 617 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + +V+ G + Sbjct: 618 YLEFRVRDTGVGINAREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVD 677 Query: 796 STPAKGTLIEIIFPLYDTSHP 816 S G++ I PLY +P Sbjct: 678 SELGMGSIFAIRIPLYQAKNP 698 >gi|167753652|ref|ZP_02425779.1| hypothetical protein ALIPUT_01932 [Alistipes putredinis DSM 17216] gi|167658277|gb|EDS02407.1| hypothetical protein ALIPUT_01932 [Alistipes putredinis DSM 17216] Length = 1057 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 139/260 (53%), Gaps = 19/260 (7%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +DI+E K+ + L AK AE KS FLA +SHEIRTPL AI+GFS +I Sbjct: 673 YDITELKETEKNLIEAKNKAEVSDRLKSAFLANMSHEIRTPLNAIVGFSNLIAETE---- 728 Query: 619 GNP-RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 +P EY + + L+L +++D+LD+SKIE+G + + +++ E + + L Sbjct: 729 -DPDERREYVAIVQENNELLLKLISDILDLSKIEAGTLEFNDVEFDVNQMCQEIVRSLSL 787 Query: 678 YANEKRILIRTSFANNIP--RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +K + +R F +++P R++ D + Q+ +N ++NA+ FT G ++ + ++ Sbjct: 788 KVLDKPVELR--FGDHLPECRLVGDKTRITQVLINFINNALKFTREGS---VTLGYRCDD 842 Query: 736 EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++L V DTG G+ E E + F ++ + Q GTGLGL ++K++V+ G+ Sbjct: 843 GMMLTFYVEDTGTGIPEQEQESVFERFVKLNSFVQ----GTGLGLAISKSIVEQMGGRIG 898 Query: 794 IFSTPAKGTLIEIIFPLYDT 813 + S P KG+ P T Sbjct: 899 LNSEPGKGSCFWFTHPYIRT 918 >gi|165920276|ref|ZP_02219548.1| putative aerobic respiration control sensor protein arcB [Coxiella burnetii RSA 334] gi|165916832|gb|EDR35436.1| putative aerobic respiration control sensor protein arcB [Coxiella burnetii RSA 334] Length = 630 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 97/355 (27%), Positives = 173/355 (48%), Gaps = 27/355 (7%) Query: 469 NREGIILSTNRAVSKLFGY--PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL- 525 +R + L N +KL G+ P I + F ++ Q S+ T++ L+ +Q + Sbjct: 139 DRNFVYLGCNHNFAKLVGFETPESIIGKTDFDLWRSQGANSIRP---TDVEVLEGKQLVD 195 Query: 526 --EKITLGSTKEEKLLSLRIIIKKLPFSSCYS------LTMHDISEWKQEKNKLSHAKKI 577 + ++L + KE L I K+P + + DI+E KQ + KL AK Sbjct: 196 VEQSLSLPNGKEGVFL-----ISKVPLRDERNEIIGILVVGTDITERKQNEQKLIEAKLK 250 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE KS+F+A +SH+ RTP+ I+G +++ P N + S NL+ Sbjct: 251 AELSDRAKSEFIANISHDFRTPINGILGIAQIFNMHEHTKKQEP----LINDLSASANLL 306 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696 L +V D+LD +++E GK+ L + +L + V+ + +K+I I + ++P Sbjct: 307 LGLVEDILDFARLEVGKLELKYSTFNLRQLVTFLVKTFSFQTQQKQIKINVYYDASLPDS 366 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VRDTGVGMTNYELE 754 I+++ +++I LN++ NA+ FT GQI ++ N+ +L+ V+DTG+G+ +L Sbjct: 367 IVSEPNYIRRIFLNLIGNAVKFTEK-GQIDVTVNLEGNKPAMLKILVKDTGIGIPKDKLN 425 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F + R EG GLGL + K +VD G+ ++ S +G+ + P Sbjct: 426 TIFDRFSRATPVYSSRYEGLGLGLSIIKRLVDNLGGEVHVSSIENEGSTFTLTIP 480 >gi|126724717|ref|ZP_01740560.1| sensory box sensor histidine kinase/response regulator [Rhodobacterales bacterium HTCC2150] gi|126705881|gb|EBA04971.1| sensory box sensor histidine kinase/response regulator [Rhodobacterales bacterium HTCC2150] Length = 784 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 114/374 (30%), Positives = 186/374 (49%), Gaps = 22/374 (5%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQ 503 RK + L ++ E+ +D + I N + I N +K GY E I R P + Sbjct: 252 RKKQRHFRWLAAVAESANDSVIISNTDNRIEWVNDTFTKTTGYSFTEAIGRIPGELL--- 308 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKI---TLGSTKEEKLLSLRIIIKKLPFSSCYSLTM-- 558 N P ++I+ D LE + + TK + + + I + F LTM Sbjct: 309 NGPETSKSANSKII--DAINKLEPVRTEIVNYTKSGQKIWVETSISPI-FDDTGELTMFV 365 Query: 559 ---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 DIS KQ + L+ A+ AE+ ++ KS FLA +SHEIRTP+ +IG ++++ + Sbjct: 366 GIERDISLIKQREVDLALARSEAEQAAAAKSAFLATISHEIRTPMNGVIGMADLLVKSKL 425 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + +E I SG +L I+ND+LD SK+ SGK+ L + +S+ + +S AI + Sbjct: 426 ----DEEQLELTKTIIESGESLLHIINDILDFSKLGSGKLELSPQAISVPDVISRAIETL 481 Query: 676 QLYANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII--ISTTHT 732 + A K I L TS ++I +L D ++QI LN++ NAI FT +GG I + + Sbjct: 482 RAVARNKDIALSMTSVQSDIGFLLIDPVRLRQIVLNLVGNAIKFTDTGGVTIDVLMQEVS 541 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 +N EV + + DTG+G+ L + + F Q + GTGLGL ++K + G Sbjct: 542 NNVEVTINISDTGIGIPADALHRIFENFTQADGDTTRKYGGTGLGLSISKRLAKQMGGDI 601 Query: 793 YIFSTPAKGTLIEI 806 + ST +G+ ++ Sbjct: 602 VVTSTVGEGSCFQV 615 >gi|300937658|ref|ZP_07152464.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 21-1] gi|300457306|gb|EFK20799.1| TMAO reductase sytem sensor TorS [Escherichia coli MS 21-1] Length = 904 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 133/253 (52%), Gaps = 25/253 (9%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN---Y 629 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + NP + Sbjct: 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD-------NPALCAQRDDLRA 474 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRI 684 I SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I Sbjct: 475 ITDSGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPI 531 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + T A+++P ++ D R ++Q+ N+LSNA+ FT GQI++ + T E+ ++ V D Sbjct: 532 CLATKIADDVPSALMGDPRRIRQVITNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVED 589 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G G+ +L + +PF Q+ RG GTGLGL ++ + A G+ ST G+ Sbjct: 590 SGCGIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELNAISTLEAGSC 645 Query: 804 IEIIFPLYDTSHP 816 + PL + P Sbjct: 646 FCLRLPLRVATAP 658 >gi|260170293|ref|ZP_05756705.1| two-component system sensor histidine kinase/response regulator, hybrid ('one component system') [Bacteroides sp. D2] Length = 1464 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 130/248 (52%), Gaps = 7/248 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG-FSEVIKNQRFGPLGNPRYIEYAN 628 K+ + I +K S K F +SHE+RTPLT I G E+ + ++ P G ++Y + Sbjct: 918 KMKNDIYIEQKVSEMKIKFFTNISHELRTPLTLIKGPIQELREREKLSPKG----LQYVD 973 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 ++++ N +L +VN +LD KI++GKM LH + +E ++ ++ + E I Sbjct: 974 LMEKNTNQMLQLVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTF 1033 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVG 747 + + AD + + NI+SNA FT SGG I I+T T + + +RV D GVG Sbjct: 1034 QLPDEPIMVWADKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVG 1093 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +L + + F Q N++ +GTG+GL L+K +V+ + G+ S +G + I+ Sbjct: 1094 IPQNKLTEIFERFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVF-IV 1152 Query: 808 FPLYDTSH 815 L D H Sbjct: 1153 ELLMDKEH 1160 >gi|148977367|ref|ZP_01813967.1| PAS/PAC Sensor Hybrid Histidine Kinase [Vibrionales bacterium SWAT-3] gi|145963319|gb|EDK28584.1| PAS/PAC Sensor Hybrid Histidine Kinase [Vibrionales bacterium SWAT-3] Length = 1424 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 80/258 (31%), Positives = 130/258 (50%), Gaps = 8/258 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DI+E KQ++ +L+ A++ A + KS FLA +SHEIRTPL I+ E+ + G Sbjct: 775 VLTDITELKQQQEELTQARQSAIAATEAKSRFLANMSHEIRTPLGGIVSLLELSEQYEVG 834 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + +S N +L IVND+LD SKIE+GK+ L ++P SLD L Sbjct: 835 ----HEVQKIHTTLSQSANNLLHIVNDILDFSKIEAGKLTLDYQPASLDTLTLRVTQLQA 890 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN- 734 A+ K + + + +L D + Q+ N+LSNAI FT G + + + N Sbjct: 891 RQAHAKGLQFKFWLDPELKDSVLMDDIRLGQVLNNLLSNAIKFTEHGTVGLTTKLVSQND 950 Query: 735 --EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++V V D+G+G++ + +PF Q + G+GLGL ++K +++ G Sbjct: 951 GQQQVCFEVFDSGIGISEEHIRNLFRPFVQADEGTTRKYGGSGLGLTISKQLIEQMGGTL 1010 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S G+ I PL Sbjct: 1011 NVISKVNLGSTFTISVPL 1028 >gi|154276398|ref|XP_001539044.1| hypothetical protein HCAG_06649 [Ajellomyces capsulatus NAm1] gi|150414117|gb|EDN09482.1| hypothetical protein HCAG_06649 [Ajellomyces capsulatus NAm1] Length = 2319 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 129/245 (52%), Gaps = 12/245 (4%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H K+ E + KS FLA VSH++RTP+ +IG SE++K + Y I Sbjct: 1796 HNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLSELLKKTNL----DREQDGYVESIRV 1851 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 + +L ++ND+LD SK+E+GKM + P++L E ++E + ++ Y + R L + Sbjct: 1852 CADTLLTLINDILDFSKLEAGKMKVSTVPLNLRETIAEVVRALR-YTHRDRGLQTIEDLD 1910 Query: 693 NI-PR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGV 746 + P+ +L D + QI +N+LSN+ FTP G + + ++ + +V DTG+ Sbjct: 1911 GVDPKLLVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVKAKAADEDDGRIRITCKVADTGI 1970 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLIE 805 G++ +L + +PF Q +S G+GLGL + KA++ D GK ++ S GT + Sbjct: 1971 GISGEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEEGVGTTVT 2030 Query: 806 IIFPL 810 L Sbjct: 2031 FTLVL 2035 >gi|94499493|ref|ZP_01306030.1| sensory transduction histidine kinase [Oceanobacter sp. RED65] gi|94428247|gb|EAT13220.1| sensory transduction histidine kinase [Oceanobacter sp. RED65] Length = 637 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 87/247 (35%), Positives = 127/247 (51%), Gaps = 10/247 (4%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KNQRFGPLGNPRYIEYA 627 N+ HA K+A+ + K DFL+ +SHEIR PL I G +++ KN++ + A Sbjct: 256 NESRHAAKVAQDANRAKGDFLSNMSHEIRNPLNGIYGILQLLSKNEQLDSEARD-LLSKA 314 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 Y +S I+ND+LD SKIES + L P S D+ V++ S + A EK + I Sbjct: 315 VYSTKSLGF---IINDILDFSKIESRALRLEEMPFSFDQIVAQTQSEIGALAKEKSVKIT 371 Query: 688 TS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS--TTHTSNE-EVILRVRD 743 + A ++ L D VKQI LN+LSN + F GG++ I+ T H + + V D Sbjct: 372 SKPLAKDVDGWLGDPTRVKQILLNLLSNGVKFA-KGGRVDINAWTEHLDGKIHLCFSVDD 430 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 GVGM L + F Q S R G+GLGL + KA+V+ G + S KGT Sbjct: 431 NGVGMDQETLSRLFNRFEQASASTSRRFGGSGLGLAITKALVEMMDGSIEVTSEIHKGTS 490 Query: 804 IEIIFPL 810 +++ PL Sbjct: 491 VKVRLPL 497 >gi|121997170|ref|YP_001001957.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila SL1] gi|121588575|gb|ABM61155.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila SL1] Length = 871 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 88/332 (26%), Positives = 159/332 (47%), Gaps = 16/332 (4%) Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 +L NR V++LFG P + + + +L + +L T++ L +T Sbjct: 400 LLYANRMVAELFGIPPPQMDGRRWIEWLGPEAREQLEAFLCRFTRAAPVGTVQLAVLAAT 459 Query: 534 KEEKLL--SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 E++ + + + + S + DI+E + A+ A+++ + FLA Sbjct: 460 GEQRRVQWTCQAFFDEDGLISHFQAVGIDITE----QVAAERARAQADRD---RRTFLAA 512 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 VSH++RTPL AI GF+++++ P+ EY + +L +++ LLD+S++E Sbjct: 513 VSHDLRTPLNAIYGFTDLLQATEL----TPQQREYLGLCRSASEKLLALIDTLLDLSRME 568 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALN 710 SG++ LH EP L E V +++++ A E + + A P+ + D Q+ N Sbjct: 569 SGRLTLHDEPFELAEVVERQVAVLRAVAEEAGLRLTVREAPGTPQWVRGDATRFGQVVHN 628 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 ++SNAI FT G++++ + + + V DTGVG+ + E K F Q N R Sbjct: 629 LISNAIQFTEH-GEVVLEVAPEGSGWLYVAVHDTGVGIAPEDREHIFKAFAQ-GNPSFRR 686 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G GLGL + + +V G+ + S KG+ Sbjct: 687 QPGNGLGLRICQELVRLMGGRLEMTSELGKGS 718 >gi|307256989|ref|ZP_07538765.1| hypothetical protein appser10_9910 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864473|gb|EFM96380.1| hypothetical protein appser10_9910 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 586 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 122/225 (54%), Gaps = 5/225 (2%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 EK + KS +A +SHE+RTPL IIG S ++ G L + + EY I+ S + Sbjct: 79 EKNNRDKSVLMATISHELRTPLNGIIGLSRILLE---GELTDQQR-EYLKTINISAVSLG 134 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-I 697 I +D++D+ KI+S ++ L + + + +S+ + L A + +I +++++P I Sbjct: 135 HIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLPNFI 194 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + QI N++SNA+ FTP+GG I +S N+ ++DTG+G+ +E K Sbjct: 195 YVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQRKVF 254 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 F Q NSQ+ + +G+G+GL ++K + G + S KG+ Sbjct: 255 AMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDLTLHSEMGKGS 299 >gi|288940490|ref|YP_003442730.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288895862|gb|ADC61698.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 762 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 106/392 (27%), Positives = 177/392 (45%), Gaps = 74/392 (18%) Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 ++ +G I N++ + L P ++ + +++ ++ N L ++LS + R+ LE Sbjct: 112 LSEDGTIREANQSAATLLDEPRSALIGRRLGLWISEDRRPAFNTLLADVLSGECRRRLE- 170 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCY----------------SLTMHDISE-------- 563 LR++I+ P +C+ L + DISE Sbjct: 171 -------------LRLVIQHRP--ACWVLAETTLVKPTVAREIRLALTDISERKALEEQL 215 Query: 564 ------WKQEKNKLS--------HAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFS 607 W E+ S A +IAE +++ KS LA +SHEIRTPL I G + Sbjct: 216 RQGEALWDSEERLCSLNAELEARGAVRIAEVNAANAAKSHLLAHMSHEIRTPLNVITGLA 275 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 E+++ N + I +G +L I++D+LD+S+IE+GK+ + +P L + Sbjct: 276 ELLEQGEL----NAQQQHQVRRIQEAGESLLGILDDILDLSRIEAGKLGIARQPFELHKL 331 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRI-----LADLRSVKQIALNILSNAIHFTPSG 722 ++ S A K + S +IP + L D ++Q+ N++ NAI FT +G Sbjct: 332 LARIESFQGRCARAKGL----SLDLDIPPLPAGAFLGDPLRLEQVLNNLIGNAIKFTNTG 387 Query: 723 G---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGL 778 G +I + T + V DTG+G+ LE +PF Q N + RG GTGLGL Sbjct: 388 GITLRIQVREAETDTPYLHFEVEDTGIGIEPQILEDLFQPFVQADANLTRSRG-GTGLGL 446 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 ++K +V+ GK S P +G+ PL Sbjct: 447 AISKHLVELMGGKIGAVSQPGRGSTFWFDLPL 478 >gi|257454302|ref|ZP_05619568.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Enhydrobacter aerosaccus SK60] gi|257448319|gb|EEV23296.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Enhydrobacter aerosaccus SK60] Length = 555 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 80/266 (30%), Positives = 130/266 (48%), Gaps = 6/266 (2%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 F + + D++ + KL + AE+ K+ FLA +SHEIRTP+ IIG E+ Sbjct: 144 FDANQQRVLADLAAMVSDTLKLRQQRYQAERADEVKTAFLANMSHEIRTPMNGIIGILEL 203 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 ++ PL + Y I S +L IVND+LD+SK+ESGK+ PV L + Sbjct: 204 LEQT---PLDTQQQ-HYIKSIKTSNEHLLTIVNDILDLSKVESGKIRFESIPVDLAQLCQ 259 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 + A + + + + +N+P+ + D V+QI +N+++NAI FTP G++ I Sbjct: 260 DVYQCFLATAKDNSVELTFDYPDNLPKYVNTDPVRVRQILINLVNNAIKFTPKQGKVTIQ 319 Query: 729 TTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + ++ ++ V DTGVG+ L + Q GTGLGL + KA+ + Sbjct: 320 AMNGGDKHQIKFNVIDTGVGIKPESLAVIFDAYNQADKFTHRLYGGTGLGLSVCKALAEG 379 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDT 813 G + S KG+ + P+ T Sbjct: 380 MGGTIKVTSEKNKGSTFTLSLPMIAT 405 >gi|257092610|ref|YP_003166251.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045134|gb|ACV34322.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 1295 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 83/262 (31%), Positives = 140/262 (53%), Gaps = 9/262 (3%) Query: 546 KKLP-FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 K +P SS ++ + D+S K +L AK+ AE + KS FLA +SHEIRTPL +I Sbjct: 754 KAMPDGSSLWNGYLADVSSAKMASEQLRLAKEDAEAANRAKSAFLANMSHEIRTPLNGVI 813 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G ++++ G + R + + +S + +L I+ND+LD SKIE+GK+ +L Sbjct: 814 GMTDLL----LGSTLSHRQRAHLQIVKQSSDALLTILNDILDFSKIEAGKLVAERVSFNL 869 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG 723 + V E + + L A++K I + A ++P +L D ++Q+ +N++ NAI FT G Sbjct: 870 RQVVGEMLKALALRASDKGIELIGDIAADVPTHVLGDPGRLRQVLVNLVGNAIKFTSQGE 929 Query: 724 QII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 I+ + + + +EV L + D+G+G+ +L F Q S R GTGLGL + Sbjct: 930 VIVRLECSAGNADEVGLHFAIIDSGIGIPEEKLATIFDAFAQADGSITRRYGGTGLGLTI 989 Query: 781 AKAMVDANMGKFYIFSTPAKGT 802 + + + G + ST +G+ Sbjct: 990 SARLAELLGGHIRVDSTLGQGS 1011 >gi|322418861|ref|YP_004198084.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320125248|gb|ADW12808.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 823 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 130/246 (52%), Gaps = 15/246 (6%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + +Q + A + A+ + KSDFLA++SHEIRTP+ ++G +E++ LG Sbjct: 162 QLEQSLESVRQAMQSAQSANRAKSDFLAQMSHEIRTPMYGVLGMTELL-------LGTDL 214 Query: 623 YIEYANYID---RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 E + Y++ RSG +L I+N++LD SKIE+G+M L P L + S+A ++ A Sbjct: 215 TKEQSRYVETVRRSGEALLSIINNILDFSKIEAGRMELETIPFDLRQLASDAAAIFAEDA 274 Query: 680 NEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K + + +PR+ L D ++Q+ +N+L NA+ FT GG + T + E + Sbjct: 275 ARKGLELSLELERGLPRMFLGDPGRLRQVMVNLLGNAVKFTLKGG--VRLTLKLAEEPAL 332 Query: 739 LR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +R V DTG+G+ + F Q S + GTGLGL +A+ + + G + S Sbjct: 333 VRISVEDTGIGIAPEARLRIFNQFAQGDESMTRKYGGTGLGLAIARQLTELMGGVLDVES 392 Query: 797 TPAKGT 802 P +G+ Sbjct: 393 EPGRGS 398 >gi|163760024|ref|ZP_02167108.1| Hybrid sensory histidine kinase [Hoeflea phototrophica DFL-43] gi|162282982|gb|EDQ33269.1| Hybrid sensory histidine kinase [Hoeflea phototrophica DFL-43] Length = 848 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 92/338 (27%), Positives = 167/338 (49%), Gaps = 32/338 (9%) Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 + R + +FG +E P +F+ + Y+ E LSL L+K + + Sbjct: 186 SGREIYAMFGDVIE-----PSNLFVHEE----FRAYMAE-LSLSQGAMLQKFLVVT---- 231 Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 +++ +++ F + IS +Q+ + A A+ KS+FLA +SHEI Sbjct: 232 --MAILLVLGGGVFVPIDIIIRQMISRLQQKTKETDLALTKAKAADRAKSEFLATMSHEI 289 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTP+ ++G +E++ + R + + I +SGN +L+I+ND+LD SKI++G+M Sbjct: 290 RTPMNGVLGMAELLTRTDL----DTRQRTFTDVILKSGNALLEIINDILDFSKIDAGQMV 345 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNA 715 L +P SL + + +L+ EK I + A +P +++ D V+QI N++ NA Sbjct: 346 LAPKPFSLVDTAEDVATLMSSRVVEKDIELAVRIAPGLPDQLIGDPGRVRQILTNLVGNA 405 Query: 716 IHFTPSGGQII-ISTTHTSNEE----------VILRVRDTGVGMTNYELEKAMKPFGQIP 764 + FT G ++ I+ E+ + + V DTG+G+ +++ F Q+ Sbjct: 406 VKFTEQGHVMVEINWKDVEPEDGEGASSRRLALSISVSDTGIGIPPDKIDAVFDKFSQVD 465 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 S + EGTGLGL +A +V+ G+ + ST +G+ Sbjct: 466 GSSTRKHEGTGLGLAIATRLVELMGGQIKLESTVGEGS 503 >gi|159900753|ref|YP_001547000.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893792|gb|ABX06872.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 1064 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 130/250 (52%), Gaps = 25/250 (10%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K + +A +SHE+RTPLTAI+G+SE++ +R L P + I G +L +VNDL Sbjct: 553 KEELVANMSHELRTPLTAILGYSELLLKRRTEVL-TPWHTTKIEGIRTGGQRLLSLVNDL 611 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LDI+K+++G++ L + ++ + E ++++Q EK+ + +IP ++ D + Sbjct: 612 LDIAKLDAGRIELQRQTTIINSLLQEQVAILQPMLREKQQTLTLQLGQHIPLLMIDPERI 671 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----------------------VILRV 741 Q N+LSNAI FTP G I +++T + +E V+++V Sbjct: 672 GQAVTNLLSNAIKFTPEQGTITLASTALNIDEHGQIDWLDQVLATEVPPMLAGQYVLIQV 731 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA-K 800 D+GVG+ L K F Q+ R GTGLGL + + +V+ + G+ + S + Sbjct: 732 SDSGVGVPAEALVKLWDRFYQVEGGSTRRFGGTGLGLSIVQQLVELHGGRTWATSAGENQ 791 Query: 801 GTLIEIIFPL 810 G+ I+ P+ Sbjct: 792 GSSFTIMLPV 801 >gi|148657870|ref|YP_001278075.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148569980|gb|ABQ92125.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 1039 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 106/380 (27%), Positives = 187/380 (49%), Gaps = 33/380 (8%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT--------VFLEQN 504 ++ +IL+A+S+ IA++ +G L+ NR +FG E L + +F + + Sbjct: 663 EMRAILDASSEAIALLAPDGTFLTVNRRFFDMFGTTAEQALGHRLSDMRAAIRWIFDDAD 722 Query: 505 TPSV-MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 V M H L Q + I + K + I P + + + Sbjct: 723 ELYVRMCHAL---------QDTQTIFRERVSQRKPQQRELAIFSSPVWTANQTHLGRLFV 773 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 ++ ++H + + KS+F+A VSHE+RTPLT+I G+ +++ + GPL + + Sbjct: 774 FR----DVTHERAV----ERMKSEFVAMVSHELRTPLTSIKGYVDMLLDGDAGPLAD-EH 824 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ--LYANE 681 E + + + +L ++NDLLD+S+IE+GK++LH P+ L + + + ++ L A + Sbjct: 825 QELLRIVKSNADRLLLLINDLLDMSRIEAGKLSLHRIPLDLRPLIRQVAATMRPHLDAKQ 884 Query: 682 KRI---LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +R+ L T + P I D QI N+LSNAI +TP G++ I T + Sbjct: 885 QRLTLDLPETPPDGSAPLIAGDAARFHQILTNLLSNAIKYTPPNGEMTIRLT-AEPPWLC 943 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V+DTG+GMT E + F + N GTGLGL + +++V+ + G+ + S P Sbjct: 944 ITVQDTGIGMTPEEQDHIFDRFYRARNRATRETGGTGLGLAITRSLVELHDGRITVESQP 1003 Query: 799 AKGTLIEIIFPLYDTSHPHD 818 KG+ + PL + + HD Sbjct: 1004 GKGSTFRVYVPLLEYADQHD 1023 >gi|332702803|ref|ZP_08422891.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552952|gb|EGJ49996.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 784 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 106/362 (29%), Positives = 178/362 (49%), Gaps = 19/362 (5%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPFTVFLEQNTPSVMNH 511 +L SI E +S GI +G L N A + + GY E+ +R+ + + Sbjct: 264 KLRSIFENSSLGIFRSTPQGRFLEANPATASILGYSSPEESIREVKDIGSQVYVNPEQRD 323 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQE 567 + +L + RQ + K +L+LRI + + + + D++E + Sbjct: 324 AIMRMLLEERRQHVTTEIQVRHKSGSILTLRINMHPVWDENGRPRYLEGFVEDMTERVRM 383 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + +L AK AE + KS+FLA +SHEIRTP+ I+G EV Q +P + Sbjct: 384 ERELRAAKSAAEAANLAKSEFLATMSHEIRTPMNGILGMVEVAMRQE----PSPAVTQSL 439 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + +S +LDI+ D+LD S+IE+GKM + L E + + L+ A +K + + Sbjct: 440 RLVRQSARALLDIIGDILDFSRIEAGKMERKEQRFLLRELLRPTLDLLAQTAVDKGLRLS 499 Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEE---VILR-- 740 A ++P +L D S++Q+ +N+L NAI FT G + + S ++ V LR Sbjct: 500 KHIARDVPEALLGDAASLRQVLVNLLGNAIKFTHEGEVALDVDLAEPSAKDSGYVRLRFT 559 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D+G+G+ +L+ +PFGQ+ + GTGLGL ++ +V G+ + STP K Sbjct: 560 VSDSGIGIPEDKLQTIFEPFGQLDGASYA---GTGLGLSISAKLVALLGGRLEVRSTPGK 616 Query: 801 GT 802 G+ Sbjct: 617 GS 618 >gi|330831029|ref|YP_004393981.1| Virulence sensor protein BvgS [Aeromonas veronii B565] gi|328806165|gb|AEB51364.1| Virulence sensor protein BvgS, putative [Aeromonas veronii B565] Length = 1413 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 138/256 (53%), Gaps = 9/256 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DI+ KQ++ +L A+ AE+ +S FLA +SHE+RTP++ + G E+++ Sbjct: 787 VIQDITALKQQEYELREARAYAEQAMQARSRFLATMSHELRTPISGMHGMLELLQ---MS 843 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L + + N + + NL L +VND+LD SKIE+G++ L+++ L + +AI Sbjct: 844 ELNDDQRFMVRNVVTSTNNL-LYLVNDILDFSKIEAGQLQLNYQSSRLQTVICDAIRGHA 902 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVK--QIALNILSNAIHFTPSGGQIIISTTHTSN 734 A+ K + + + +++P AD+ V+ Q+ N+L+NA+ FT GG I I ++ S Sbjct: 903 ALAHNKGLNVVLEWEHHVPD-WADIDGVRIGQVISNLLNNAVKFTEQGG-ITIRVSYLS- 959 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E++ + V DTG+G+ + PF Q+ + R GTGLGL + + +V G + Sbjct: 960 EQLTISVSDTGIGIAEEKQALLFTPFEQVESDINRRFGGTGLGLAICEQLVCKMGGALTL 1019 Query: 795 FSTPAKGTLIEIIFPL 810 S +G+ PL Sbjct: 1020 TSKAGEGSCFRFTVPL 1035 >gi|153950420|ref|YP_001402786.1| sensor histidine kinase/response regulator EsrA [Yersinia pseudotuberculosis IP 31758] gi|152961915|gb|ABS49376.1| putative sensor histidine kinase/response regulator EsrA [Yersinia pseudotuberculosis IP 31758] Length = 939 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 78/239 (32%), Positives = 120/239 (50%), Gaps = 11/239 (4%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ + KSD L +SHEIRTPL +G E+++N G R E A+ S +L Sbjct: 392 EQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDA-GQMRLAETAHQCSLS---LL 447 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 I+N+LLD S+IESG+M L + +L + +A+ + A K + + T + +IP L Sbjct: 448 AIINNLLDFSRIESGQMTLSLKKTALLPLLDQAMLTIHSQALSKSLALSTFISADIPLEL 507 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D ++QI +N+L NA+ FTP G I N+ + V DTG G+ + Sbjct: 508 ELDTLRLRQILVNLLGNAVKFTPQGR--IQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIF 565 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 +PF Q + +Q GTGLGL +A + G +FS P +G+ + P + P Sbjct: 566 QPFMQTSDHEQ----GTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPP 620 >gi|119509388|ref|ZP_01628537.1| Multi-sensor Hybrid Histidine Kinase [Nodularia spumigena CCY9414] gi|119466002|gb|EAW46890.1| Multi-sensor Hybrid Histidine Kinase [Nodularia spumigena CCY9414] Length = 1508 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 134/243 (55%), Gaps = 10/243 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K ++ +L A++ AE S KS FLA +SHEIRTP+ A++G + ++ N Sbjct: 864 KLQREELEIARQEAELASQAKSAFLANMSHEIRTPMNAVLGMTGLLLETNL----NREQR 919 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 ++A I SG+ +L ++N++LD+SK+E+G+M L L V E + L+ A+++ + Sbjct: 920 DFAETIRISGDALLCLINEILDLSKLEAGEMFLETLDFDLSTCVEEVLELLAPQAHKQEL 979 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST---THTSNEEVI-L 739 I N+P + D ++QI +N++ NAI FT S G+I++ + T N I Sbjct: 980 EIAGLIHRNVPVHLQGDASRLRQILMNLVGNAIKFT-STGEIVVRAELLSQTPNTVTIHF 1038 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+++ + K +PF Q+ S + GTGLGL +++ +V G + S Sbjct: 1039 SVTDTGIGISSEDQNKLFQPFTQVDASITRKYGGTGLGLAISQQLVSLMGGTIGVNSQLG 1098 Query: 800 KGT 802 KG+ Sbjct: 1099 KGS 1101 >gi|298505215|gb|ADI83938.1| phosphate sensor histidine kinase, HAMP and PAS domain-containing [Geobacter sulfurreducens KN400] Length = 589 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 131/536 (24%), Positives = 223/536 (41%), Gaps = 74/536 (13%) Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE--TVDKCPIPFFVY----SHGN 340 QY GTL+N H N P + ++G K P+ + + G Sbjct: 99 QYLGTLEN----------HANRPEVRQALEQGGGAAVRYSATIKTPMLYVATVLNTTEGE 148 Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 S L K+ I G S + + + + RS RT + +L Sbjct: 149 RGVLRLSLPLTAVEKAKQSIRTLLGASLAVSLVVALLLSYLLSRLTSRSLRTITTLATQL 208 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 + R + I ++ + M + + E RI+ K ++ +IL Sbjct: 209 GRGDYGRR----IPVITRDEVGELARVMNEMASQIERNLARISAEKNRLD-----TILRG 259 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL- 519 +G+ + + G + N A LFG T SV + EI Sbjct: 260 MGEGLMVSDAGGTVTLVNPAFLDLFGL-----------------TQSVEGRQIIEIARFP 302 Query: 520 DLRQT-----------LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568 +L +T +E++TL E+++L+ + + + HDIS+ K Sbjct: 303 ELHETFRAVVSSRSEHVEEMTLPLGDEKQVLTHWVPLMEEDELRGVVAVFHDISDLK--- 359 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF--GPLGNPRYIEY 626 +L ++ DF+A VSHE+RTP+T I G++E + P R++E Sbjct: 360 -RLEVVRR----------DFVANVSHELRTPVTVIKGYAEALAGGLVEEDPERAGRFLEI 408 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I + D++ DLL +S++ESG + L + LD AVS A L++ A K I I Sbjct: 409 ---ICSHSERLADLIRDLLTLSQLESGGLQLELTQIHLDRAVSHAAGLLEQKAARKEIAI 465 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 S P +LAD ++Q+ +N++ NA+ +TP GG I +S ++ V + V DTG+ Sbjct: 466 DISALAGAPPVLADPGRLEQVLINLMDNALKYTPPGGTITLSADE-ADGMVRVSVHDTGI 524 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+ +L + + F ++ ++ GTGLGL + K ++ + G + S KGT Sbjct: 525 GIPPKDLPRIFERFYRVDAARSRDEGGTGLGLSIVKHIIQLHGGNITVESEHGKGT 580 >gi|312890095|ref|ZP_07749639.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311297627|gb|EFQ74752.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 936 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 132/247 (53%), Gaps = 13/247 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 +S+ +QE+ A++ AEK + KS FLA +SHEIRTP+ ++G + +++ N Sbjct: 399 LSQRQQEQA----AREDAEKANQAKSVFLATMSHEIRTPMNGVLGMASLLEETTL----N 450 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 EY + I SG +L +++D+LD SKIESGK++L +L + + E + + Sbjct: 451 NEQREYVSTIKNSGETLLSVISDVLDFSKIESGKLDLDPHQFNLRQCIEEVMDIFSGKVA 510 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG----GQIIISTTHTSNE 735 + + +P I+AD +KQ+ +N++ NAI FT G G ++S T + Sbjct: 511 RIGLDLVYQIGYEVPAHIIADSLRLKQVLINLVGNAIKFTSKGEVFLGVSLLSRTDDHSL 570 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 E+ V+DTG+G+ +L + K F QI +S R G+GLGL + + +V G+ + Sbjct: 571 ELAFEVKDTGIGIPRDKLPRLFKAFSQIDSSTTRRYGGSGLGLAICERLVHLMEGQITVE 630 Query: 796 STPAKGT 802 S GT Sbjct: 631 SQLDLGT 637 >gi|218531622|ref|YP_002422438.1| histidine kinase [Methylobacterium chloromethanicum CM4] gi|218523925|gb|ACK84510.1| histidine kinase [Methylobacterium chloromethanicum CM4] Length = 1071 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 139/250 (55%), Gaps = 10/250 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I+ K KL AK+ AE + KS ++ +SHE+RTPL A++G++++++ P Sbjct: 583 EIAAHKITDAKLQQAKETAEAANLAKSRYVVGISHELRTPLNAVLGYAQLLEGDPSIP-- 640 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 PR I RS + +++ LLDIS++E+G++ H + L + +++ + +V+L A Sbjct: 641 EPRR-NGIRVIRRSAQHLSGLIDGLLDISRMEAGRLQTHRNEIRLADFLAQIVDMVRLQA 699 Query: 680 NEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + R + +P ++A D + ++QI LN+LSNAI FTP G++ + T+ + + Sbjct: 700 EGAGLTFRFTRPEILPAVVATDEKRLRQILLNLLSNAIKFTPE-GEVALEMTY-RGQVAV 757 Query: 739 LRVRDTGVGMTNYELEKAMKPF--GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +RDTG+G+ +L + +PF G +P ++ GTGLGL +A + G+ + S Sbjct: 758 FTIRDTGLGIPEADLGRIFEPFERGSMPAARA--APGTGLGLTIAHLLSQVMGGEITVES 815 Query: 797 TPAKGTLIEI 806 +GT + Sbjct: 816 RVGEGTCFRV 825 >gi|222084676|ref|YP_002543205.1| two-component sensor histidine kinase/response regulator hybrid protein [Agrobacterium radiobacter K84] gi|221722124|gb|ACM25280.1| two-component sensor histidine kinase/response regulator hybrid protein [Agrobacterium radiobacter K84] Length = 767 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 85/268 (31%), Positives = 133/268 (49%), Gaps = 16/268 (5%) Query: 549 PFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 P S S+ D++E +Q A+ AE S+ KS LA VSHEIRTPL+ I+G Sbjct: 217 PVSGRLSIQSVARDVTEERQAARLREDARLKAEYNSAAKSRLLATVSHEIRTPLSGILGM 276 Query: 607 SEVIKNQRFGPLGNPRYIEYANY---IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 + ++ P +E ANY I +SGN ++ +V DLLD S IE + L Sbjct: 277 NHLLAQ-------TPLTLEQANYLTGIRQSGNALVQLVEDLLDFSTIEVNRFQLRPRAEM 329 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSG 722 L + + ++ A+EK I I + A ++P + D ++Q+ N++ NA+ FT +G Sbjct: 330 LRPLLEGVVEMLAHRAHEKGIEIAATVAADVPETMEFDPARLRQVLFNVIGNAVKFTQTG 389 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 G +I + N +++ VRD+G GMT E + F Q N + GTGLGL ++ Sbjct: 390 GVLIRAGLDGGN--LLISVRDSGPGMTEEEQARIFGEFEQAGNVLD-KSAGTGLGLAISA 446 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPL 810 ++ G + S G+ I FP+ Sbjct: 447 RILREFGGALSVASERGNGSEFTIRFPV 474 >gi|315918654|ref|ZP_07914894.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] gi|313692529|gb|EFS29364.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] Length = 1476 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 130/248 (52%), Gaps = 7/248 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG-FSEVIKNQRFGPLGNPRYIEYAN 628 K+ + I +K S K F +SHE+RTPLT I G E+ + ++ P G ++Y + Sbjct: 930 KMKNDIYIEQKVSEMKIKFFTNISHELRTPLTLIKGPIQELREREKLSPKG----LQYVD 985 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 ++++ N +L +VN +LD KI++GKM LH + +E ++ ++ + E I Sbjct: 986 LMEKNTNQMLQLVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTF 1045 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVG 747 + + AD + + NI+SNA FT SGG I I+T T + + +RV D GVG Sbjct: 1046 QLPDEPIMVWADKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVG 1105 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +L + + F Q N++ +GTG+GL L+K +V+ + G+ S +G + I+ Sbjct: 1106 IPQNKLTEIFERFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVF-IV 1164 Query: 808 FPLYDTSH 815 L D H Sbjct: 1165 ELLMDKEH 1172 >gi|284054567|ref|ZP_06384777.1| two-component hybrid sensor and regulator histidine kinase [Arthrospira platensis str. Paraca] Length = 812 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 94/294 (31%), Positives = 160/294 (54%), Gaps = 36/294 (12%) Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQE------------KNKLSHAKKIAEKESSHKSDFL 589 R+ IKK+ + S T + +S QE +L AK+ AE + KS FL Sbjct: 389 RVDIKKIKETEQLSQTFNQMSSQLQELFETLEIRVEQRTAELRQAKENAEVANQAKSQFL 448 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQ----RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 A +SHE+RTPL AI+GF++++ Q L N R ++ I RSG +L ++ND+L Sbjct: 449 AHMSHELRTPLNAILGFTQLMIRQISLENNHNLNNFR--DHLYIIQRSGEHLLQLINDVL 506 Query: 646 DISKIESGKMNL---HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADL 701 D+SKIE+GK++L +F+ SL +++ E S+ K I +R+ N+PR I +D Sbjct: 507 DMSKIEAGKISLNINNFDLWSLLDSLEEMFSIRAASEGLKLIFVRSP---NLPRYINSDE 563 Query: 702 RSVKQIALNILSNAIHFTPSG-----GQIIISTTHTSNEE---VILR--VRDTGVGMTNY 751 + ++Q+ +N++ NA+ FT +G Q+I N + ++L+ V DTG G+ Sbjct: 564 QKLRQVLINLIGNAVKFTENGSVTLHSQVIDPPNQIDNPQPPPMVLQFTVEDTGPGIAPA 623 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 ++++ +PF Q ++ + +GTGLGLP+++ V G + ST G++ + Sbjct: 624 DIDQLFEPFLQTETGRKYQ-QGTGLGLPISQQFVQLMGGDISVSSTLGVGSVFK 676 >gi|258623619|ref|ZP_05718612.1| sensor protein TorS [Vibrio mimicus VM573] gi|258584107|gb|EEW08863.1| sensor protein TorS [Vibrio mimicus VM573] Length = 968 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 84/265 (31%), Positives = 130/265 (49%), Gaps = 12/265 (4%) Query: 559 HDISEWKQEKNK--LSHAKK--IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 H +SE + N+ L+HAK AE+ S KS FLA +SHEIRTP+ ++G + +++ Sbjct: 440 HQLSEMNHKLNQEVLNHAKARYQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQETS 499 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 Y I+RSG +L I+ND+LD SKIE+G + +H L V E L Sbjct: 500 LTSTQQ----HYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHQTHFDLYRLVRETHEL 555 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +Q A EK I + F +++ R D + Q+ N++ N I FT G I + Sbjct: 556 MQSRALEKGITLSYQFEDDVTRYWQGDEIRIGQVLNNLVGNGIKFTEQGHVCIRISQDLE 615 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + + V D+G+G+ + F Q + R +GTGLGL +++ +V A G+ Sbjct: 616 GQGIRFAVEDSGIGIAEQDQASLFDAFTQAEAGR--RKQGTGLGLAISRKLVQAMGGELQ 673 Query: 794 IFSTPAKGTLIEIIFPLYDTSHPHD 818 + S +G+ PL D P D Sbjct: 674 LSSQLGQGSCFSFTLPL-DPGQPVD 697 >gi|322627799|gb|EFY24589.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|323242709|gb|EGA26730.1| secretion system regulator:Sensor component [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] Length = 538 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 125/247 (50%), Gaps = 17/247 (6%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 KK AE+ + KS L +SHE+RTP+ ++G E+++ P IE D + Sbjct: 4 KKRAEQANKRKSIHLTVISHELRTPMNGVLGAIELLQT-------TPLNIEQQGLADTAR 56 Query: 635 NL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 N +L I+N+LLD S+IESG LH E +L + +A+ +Q A K++ +RT Sbjct: 57 NCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVG 116 Query: 692 NNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 ++P D ++QI +N+L NA+ FT +GG I T E++I V D+G G+ Sbjct: 117 QHVPLYFHTDSIRLRQILVNLLGNAVKFTETGG--IRLTVKRHEEQLIFLVSDSGKGIEI 174 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + F Q + Q GTG+GL +A ++ G + S P GT + ++ PL Sbjct: 175 QQQSQIFTAFYQADTNSQ----GTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPL 230 Query: 811 YDTSHPH 817 + P Sbjct: 231 QEYQPPQ 237 >gi|154252838|ref|YP_001413662.1| histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154156788|gb|ABS64005.1| histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 539 Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 82/272 (30%), Positives = 141/272 (51%), Gaps = 9/272 (3%) Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 +++I L F ++ D++ ++ + +L ++K AE + KS FLA +SHEIRTPL Sbjct: 106 MQVIEIPLSFGGWVAVGA-DVTALRERERELKKSRKQAEAANEAKSAFLANISHEIRTPL 164 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 I+G ++++ + P G IE I SG ++ ++ND+LD+SKIE+G+ ++ Sbjct: 165 NGILGMAQLMASGDLTP-GQKDQIE---TILDSGKTLMALLNDVLDLSKIEAGRFDISPI 220 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFT 719 L + + L A+EK +++ + +P +L D V+Q N++SNAI FT Sbjct: 221 DNDLGQLLRRMEKLWAPRASEKGLVLTLDINSAMPELLRFDPIRVRQCVSNLVSNAIKFT 280 Query: 720 PSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 G + + + E +V++ + DTG+GM+ L K PF Q S R GTGL Sbjct: 281 ERGSVRVAARCVPAGEGEFDVLVEISDTGIGMSGETLGKLFAPFTQADASTSRRFGGTGL 340 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GL +++ + G S +G+L + F Sbjct: 341 GLSISRKLAQLMGGDVVAESEEGRGSLFTLTF 372 >gi|237723244|ref|ZP_04553725.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229447766|gb|EEO53557.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 621 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 86/253 (33%), Positives = 137/253 (54%), Gaps = 15/253 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K+ + L AK+ AE+ KS FLA +SHEIRTPL AI+GFS +++ Sbjct: 381 DITELKETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSSLLEEAEDAEEK 440 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + YA I+ + L+L +++D+LD+SKIE+G ++ E V + +E + +Q+ A Sbjct: 441 HL----YATIIEENNKLLLQLISDILDLSKIEAGTFDIIPEQVDAQQLCNELLQSMQVRA 496 Query: 680 NEKRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 E+ + A +P + +D + Q+ LN ++NA+ FT S G I+I N EV Sbjct: 497 TEQ---VEILLAPELPELTFTSDKNRLYQVLLNFVTNALKFT-SEGSIVIDYRINGN-EV 551 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V+DTG+G+ + E F ++ N GTGLGLP+ +++V GK + S Sbjct: 552 RFSVQDTGMGIEPEKQEAIFTRFVKLNNFIA----GTGLGLPICQSIVTQLGGKIGVESE 607 Query: 798 PAKGTLIEIIFPL 810 P KG+ P+ Sbjct: 608 PGKGSCFWFTHPI 620 >gi|217978045|ref|YP_002362192.1| multi-sensor signal transduction histidine kinase [Methylocella silvestris BL2] gi|217503421|gb|ACK50830.1| multi-sensor signal transduction histidine kinase [Methylocella silvestris BL2] Length = 792 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/230 (33%), Positives = 130/230 (56%), Gaps = 5/230 (2%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S HKS F A +SHE+RTPL AI+G++E++++ +G L + R ++ +G +L ++ Sbjct: 558 SEHKSRFFANMSHELRTPLNAILGYAELLRDGLYGELPD-RAKSVLERVESNGAHLLGLI 616 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 ND+LD+SK+E+G+++L + S+ V +AI A K + I + +P D Sbjct: 617 NDVLDLSKLEAGELSLVLDEYSMRNIVEQAIGATYSLAQAKGLRIDQTIEEPMPLGRGDE 676 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 R + Q+ +NILSNAI FT G I + T E++ V DTG G+ + + + F Sbjct: 677 RRLTQVLINILSNAIKFTDEGYVAIKAQTLADMFEIV--VTDTGPGIPPEDQARIFEAFQ 734 Query: 762 QIPN-SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 Q N S +++G GTGLGL +++ V+ + G + S +G+ I+ P+ Sbjct: 735 QGDNTSTRLKG-GTGLGLSISRRFVEMHGGAISVASKLGEGSSFTILVPI 783 >gi|119489826|ref|ZP_01622581.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] gi|119454254|gb|EAW35405.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] Length = 1666 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/244 (33%), Positives = 140/244 (57%), Gaps = 18/244 (7%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L +K A+ + KS FLA++SHE+RTPL I+G++++++ + + +E I Sbjct: 1180 LKQSKANADAANLAKSKFLAQMSHELRTPLNGILGYTQILQRDQTLTEQQQQSLE---II 1236 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + GN +LD++ND+LD++KIE+ KM+L+ + L + E ++ A K L T F Sbjct: 1237 YKCGNHLLDLINDILDLAKIEAQKMDLYPNTLKLKAFLDEIAVIIHPRATGKG-LTWTYF 1295 Query: 691 ANNIPRI-----LADLRSVKQIALNILSNAIHFTPSGGQI----IISTTHTSNEEVILR- 740 + P++ L D + ++QI LN+LSNA+ FT +G I +IS SN V LR Sbjct: 1296 TD--PQLSNLFCLVDSKRLRQILLNLLSNAVKFTDTGEVILEVEVISPFTNSNPYVTLRF 1353 Query: 741 -VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V+DTG+G+ + ++E +PF Q + + + EGTGLGL + + +++ K + S Sbjct: 1354 KVKDTGIGIPSEKIESLFQPFEQGTEAYK-QSEGTGLGLTITQKLLEMMGAKLEVESQYN 1412 Query: 800 KGTL 803 +G+L Sbjct: 1413 QGSL 1416 >gi|91772717|ref|YP_565409.1| external sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711732|gb|ABE51659.1| Signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 592 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 137/252 (54%), Gaps = 12/252 (4%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 SE ++ + L +A K ++ K+DF++ VSHE++TPLTA+ SE ++ Sbjct: 335 SELERSNDYLQNANKKLKELDRLKNDFVSMVSHELKTPLTAMKTSSEFLRESEC-----S 389 Query: 622 RYI--EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R I E + I R+ + +V+DLLDIS+IESGKM E V++ E + ++ V +A Sbjct: 390 REIKEEMLDLIIRNIDRQARMVDDLLDISRIESGKMKFTPEDVNIKEIIEISLHNVTKHA 449 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 +K I I + +++P I D + +I +N+L+NAI FTP G++ T + E L Sbjct: 450 KDKSIKIMVNCPDDVPAISTDKDKLIRIFVNLLTNAIKFTPEEGEV---TVIVEDHEDYL 506 Query: 740 R--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + ++D G+G+ + +K F Q+ ++ + GTGLGL + K ++D GK Y+ S Sbjct: 507 QTSIKDNGIGILEEKRDKIFDKFYQVDSTATRKAGGTGLGLAIIKGIIDGQGGKIYLESE 566 Query: 798 PAKGTLIEIIFP 809 KG+ P Sbjct: 567 TGKGSTFTFRLP 578 >gi|117926468|ref|YP_867085.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610224|gb|ABK45679.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1075 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 130/246 (52%), Gaps = 6/246 (2%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DI+ K+ + L K+ AE + KS FLA +SHEIRTP+ AI+G +E+++ Sbjct: 672 VQDITARKRMELALQEQKEQAEAANRAKSTFLAVMSHEIRTPMNAILGMAELLRESDL-- 729 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 R ++RSG +L ++ND+LD+SKIE+ ++ L L + V + SL Sbjct: 730 --TSRQHWCVETLNRSGESLLSLINDILDLSKIEAERLTLEHVVFDLVQLVGDVCSLFGY 787 Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A K + ++ A +PR ++ D ++QI +N++ NA+ FT G + + ++ Sbjct: 788 EAQSKGLALKHHIAPTLPRYVVGDPIRLRQIMMNLVGNAVKFTKQ-GHVSVELNPLADGR 846 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + +RDTG+G++ + KPF Q +S GTGLGL + +V G+ + S Sbjct: 847 LSFVIRDTGIGVSVEQQRNIFKPFTQADSSITREHGGTGLGLTICMRLVALMGGEMQLES 906 Query: 797 TPAKGT 802 T +G+ Sbjct: 907 TLGEGS 912 >gi|153837140|ref|ZP_01989807.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio parahaemolyticus AQ3810] gi|260900476|ref|ZP_05908871.1| LuxQ, periplasmic family [Vibrio parahaemolyticus AQ4037] gi|149749557|gb|EDM60303.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio parahaemolyticus AQ3810] gi|308106963|gb|EFO44503.1| LuxQ, periplasmic family [Vibrio parahaemolyticus AQ4037] Length = 858 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 137/263 (52%), Gaps = 17/263 (6%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ + + + + A++ AEK + ++DFLA++SHEIRTP+ I+G ++++K+ Sbjct: 456 QDITTLIEAEKQSNLARREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKD------ 509 Query: 619 GNPRYIEYANYID---RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + E N ID SG +L ++ND+LD SKIE GK N+ P S + + ++ Sbjct: 510 -SVEAEEQKNQIDVLRHSGEHLLAVLNDILDFSKIEQGKFNIQKHPFSFADTMRTLENIY 568 Query: 676 QLYANEK--RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-- 731 + K ++I N+ I D + QI N++SNA+ FTPSG + + Sbjct: 569 RPICENKGVELVIENRLDGNV-EIFTDQVRLNQILFNLVSNAVKFTPSGCVRLHAELEQF 627 Query: 732 --TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 N +++ + DTG+G+ + +L++ +PF Q + G+GLGL + K +VD Sbjct: 628 YGADNSVLVVEISDTGIGIESDKLDEMFEPFVQEEATTTREYGGSGLGLTIVKNLVDMLD 687 Query: 790 GKFYIFSTPAKGTLIEIIFPLYD 812 G + S +GT + P+ D Sbjct: 688 GDVQVRSQKGQGTTFVVTLPVKD 710 >gi|170728644|ref|YP_001762670.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169813991|gb|ACA88575.1| PAS/PAC sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 1245 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/253 (33%), Positives = 131/253 (51%), Gaps = 14/253 (5%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ K + + AK+ AE + +KS+FLA +SHEIRTP+ AIIG ++ + Sbjct: 706 THKDITRHKSNEVVMLEAKQDAESANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLT 765 Query: 617 PLGNPRYIEYANYIDRSG---NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 P + +Y+D++G +L I+ND+LD SKIE+GK+ L LD+ + A+ Sbjct: 766 P-------QQEDYLDKAGFSAQSLLRIINDILDFSKIEAGKLELERVSFPLDKVLDHALD 818 Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH 731 L L A EK + + IL D + Q+ +N+LSNA+ FT SG ++ Sbjct: 819 LNALKAQEKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQSGEIELGCEDVG 878 Query: 732 TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + + L+ VRDTG+G++ + E F Q S + GTGLGL ++K +V Sbjct: 879 ERDHRITLKFWVRDTGIGISKEQQESLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMG 938 Query: 790 GKFYIFSTPAKGT 802 G + S G+ Sbjct: 939 GTMQVQSEMGVGS 951 >gi|298251742|ref|ZP_06975545.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297546334|gb|EFH80202.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 489 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 86/259 (33%), Positives = 136/259 (52%), Gaps = 12/259 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLAR-----VSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 + E L+HA A +S +S+ L R V+HE+R PL I G+ E++++Q P Sbjct: 219 RGEIGALAHAFN-AMADSLSRSEQLRRNLVSDVAHELRNPLMNIRGYLELLQDQVLEP-- 275 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P E + +L+ +V DL D+S E+G+++L +P+ L + S+A+ +VQ + Sbjct: 276 TP---ETLASLYEETSLLNRLVADLQDVSLAEAGQLHLTRQPIELADIASQAVQIVQPHL 332 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 EK++ + S +++P I AD V QI N+LSNAI TPS G+I ++ S V + Sbjct: 333 AEKQLTLHVSIPSDLPHIEADQERVAQILRNLLSNAIRHTPSQGEICLAAG-LSEAGVHI 391 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 VRDTGVG+ L + F + S+ GTGLGL + K +V A+ G+ + S Sbjct: 392 SVRDTGVGIAPEHLPYLFERFYRADFSRARATGGTGLGLAIVKQVVQAHGGQVSVESQVG 451 Query: 800 KGTLIEIIFPLYDTSHPHD 818 KGT P+ + H Sbjct: 452 KGTCFTFTLPVAALAPAHQ 470 >gi|262408055|ref|ZP_06084603.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|262354863|gb|EEZ03955.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] Length = 1476 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 130/248 (52%), Gaps = 7/248 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG-FSEVIKNQRFGPLGNPRYIEYAN 628 K+ + I +K S K F +SHE+RTPLT I G E+ + ++ P G ++Y + Sbjct: 930 KMKNDIYIEQKVSEMKIKFFTNISHELRTPLTLIKGPIQELREREKLSPKG----LQYVD 985 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 ++++ N +L +VN +LD KI++GKM LH + +E ++ ++ + E I Sbjct: 986 LMEKNTNQMLQLVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTF 1045 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVG 747 + + AD + + NI+SNA FT SGG I I+T T + + +RV D GVG Sbjct: 1046 QLPDEPIMVWADKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVG 1105 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +L + + F Q N++ +GTG+GL L+K +V+ + G+ S +G + I+ Sbjct: 1106 IPQNKLTEIFERFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVF-IV 1164 Query: 808 FPLYDTSH 815 L D H Sbjct: 1165 ELLMDKEH 1172 >gi|237748972|ref|ZP_04579452.1| two-component sensor histidine kinase [Oxalobacter formigenes OXCC13] gi|229380334|gb|EEO30425.1| two-component sensor histidine kinase [Oxalobacter formigenes OXCC13] Length = 877 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 86/263 (32%), Positives = 136/263 (51%), Gaps = 11/263 (4%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 F Y L + D++E ++ + L A A+ ++ KS FL+R+SHEIRTP+ AIIG + + Sbjct: 330 FGDRYILVISDLTEIRKTQEVLKDALVNAQNANNAKSTFLSRMSHEIRTPMNAIIGMTAI 389 Query: 610 IKNQRFGPLGNPRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 L + IE + I S ++ ++ND+LD+SKIESGK+ L +EP L + + Sbjct: 390 ATT----ALNDRSKIENCLSKIAFSSRHLMMLINDVLDMSKIESGKLTLTYEPFELSDLI 445 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 S S++ A K+ + + + D+ QI +NILSNA+ FTP G I + Sbjct: 446 SNIGSIIYPQAAFKKQEFEINVNVSHECLTGDVLRTNQILINILSNAVKFTPEKGHIRLR 505 Query: 729 TTHTS---NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + V LR + D G GM+ +EK PF Q + ++ EGTGLG+P+ Sbjct: 506 IEEMKKRFDSRVWLRFTISDDGCGMSAEFIEKIFTPFEQETRTTRLV-EGTGLGMPITGN 564 Query: 784 MVDANMGKFYIFSTPAKGTLIEI 806 +V G + S KG++ + Sbjct: 565 LVTLMDGAINVQSEVDKGSIFTV 587 >gi|189500623|ref|YP_001960093.1| multi-sensor signal transduction histidine kinase [Chlorobium phaeobacteroides BS1] gi|189496064|gb|ACE04612.1| multi-sensor signal transduction histidine kinase [Chlorobium phaeobacteroides BS1] Length = 608 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/293 (28%), Positives = 157/293 (53%), Gaps = 23/293 (7%) Query: 526 EKITLGSTKEEKLL---SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 E++T+ + + E++L ++ II +K+P + + M+DI+ KL + +++ Sbjct: 320 EEVTVMTDRGERVLQVSAMPIIKRKIPEGTVF--VMNDIT-------KLLNLERM----- 365 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 + DF++ VSHE+RTPLT+I G++E + N ++ + I + + ++N Sbjct: 366 --RRDFVSSVSHELRTPLTSITGYTETLLEGAIDDAENAKH--FLQIILQESERLTALIN 421 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702 D+LD+SKIESG++ F PV L V + + L +K I++R ++P + AD Sbjct: 422 DVLDLSKIESGRIEYTFAPVCLRAIVDQVVDLFGRAIEKKGIVLRVQIPQDLPYVNADKG 481 Query: 703 SVKQIALNILSNAIHFTP-SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 ++ + N+L NAI + GQI+IS + T ++ V + V+D G+G+ +L + + F Sbjct: 482 YLELVLRNLLDNAIKYVAEQNGQIMISAS-TVDDMVRVEVKDNGIGIPRKDLGRIFERFY 540 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 ++ ++ GTGLGL + K +V A+ GK + S G+ + P+ S Sbjct: 541 RVDKARSRAVSGTGLGLSIVKHIVLAHKGKVEVRSRLNLGSQFSFVIPIAGQS 593 >gi|332526607|ref|ZP_08402714.1| histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332110870|gb|EGJ11047.1| histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 601 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 124/234 (52%), Gaps = 11/234 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHE+RTPLT+I GF+E+++++ L NP++ + A I + + ++ ++ Sbjct: 365 KSEFLAAISHELRTPLTSIRGFAELMEHR----LDNPKFRDQAGLIRKGAEYLNQLLGEI 420 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703 LD++K+E+G M L EPV+L V + L A K + + P+ I+AD Sbjct: 421 LDLAKVEAGSMTLSSEPVNLGSLVQGTVDFYALTAAGKGLTLAVEIDPEAPQVIVADGLR 480 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 VKQI N+LSNAI FTP+G ++ + V++ V DTG G+ E + F Q Sbjct: 481 VKQILNNLLSNAIKFTPAGRVDVM--VERLGDRVLMHVEDTGPGIAPELHETIFERFRQG 538 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT----LIEIIFPLYDT 813 GTGLGL L++A+ G + S P +G + I+ P T Sbjct: 539 SARVSYEHGGTGLGLALSRALAQLMGGTLTLASEPGRGARFTLALTIVLPATAT 592 >gi|293370753|ref|ZP_06617300.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|298481267|ref|ZP_06999460.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. D22] gi|292634186|gb|EFF52728.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|298272471|gb|EFI14039.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. D22] Length = 1476 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 130/248 (52%), Gaps = 7/248 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG-FSEVIKNQRFGPLGNPRYIEYAN 628 K+ + I +K S K F +SHE+RTPLT I G E+ + ++ P G ++Y + Sbjct: 930 KMKNDIYIEQKVSEMKIKFFTNISHELRTPLTLIKGPIQELREREKLSPKG----LQYVD 985 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 ++++ N +L +VN +LD KI++GKM LH + +E ++ ++ + E I Sbjct: 986 LMEKNTNQMLQLVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTF 1045 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVG 747 + + AD + + NI+SNA FT SGG I I+T T + + +RV D GVG Sbjct: 1046 QLPDEPIMVWADKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVG 1105 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +L + + F Q N++ +GTG+GL L+K +V+ + G+ S +G + I+ Sbjct: 1106 IPQNKLTEIFERFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVF-IV 1164 Query: 808 FPLYDTSH 815 L D H Sbjct: 1165 ELLMDKEH 1172 >gi|149926094|ref|ZP_01914357.1| Signal transduction histidine kinase [Limnobacter sp. MED105] gi|149825382|gb|EDM84593.1| Signal transduction histidine kinase [Limnobacter sp. MED105] Length = 1023 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 83/232 (35%), Positives = 132/232 (56%), Gaps = 9/232 (3%) Query: 578 AEKES-SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 AEK+S + KS FLA +SHEIRTPL I+GF+ +++ P G + E A Y+ +S Sbjct: 648 AEKDSNAEKSRFLATMSHEIRTPLNGIMGFARLLEMDL--PAGELK--EQAGYLVQSSET 703 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 + I+ND+LD SK+ESG + L P +++ + + L +L K + + + Sbjct: 704 LSAILNDILDFSKLESGMVKLVDSPFLMEQLLKGSTELPRLTCESKGVKFELNNKLGEHQ 763 Query: 697 ILA-DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS-NEEVI-LRVRDTGVGMTNYE 752 I + D+ ++QI N+LSNAI FT G + +S T S NE++I V DTG+G+ + Sbjct: 764 IFSGDMGRLRQILQNLLSNAIKFTSHGKVSLTVSNTQISPNEDLITFEVSDTGLGIPKEK 823 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 KPF Q+ ++ R GTGLGL + K++++A G+ + S P +GT + Sbjct: 824 QSLLFKPFSQVHTDRENRFGGTGLGLSIVKSLINAMGGEIQLESEPGQGTQV 875 >gi|302390748|ref|YP_003826569.1| multi-sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] gi|302201376|gb|ADL08946.1| multi-sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] Length = 590 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 99/377 (26%), Positives = 187/377 (49%), Gaps = 54/377 (14%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 K KME +IL +DG+ +N G ++ N A ++ ED L + F Sbjct: 253 KEKME-------AILTNMADGVIALNGRGEVIHINPAARRMLQLE-EDQLGQDFA----- 299 Query: 504 NTPSVMNHYLTEILSL---DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--------S 552 L EI + D ++T + T+ E L+ +R K F+ + Sbjct: 300 -------EKLREIFKINPEDFQKTEQ------TQLEVLVKVRDGTLKAIFAPLVGDGRVT 346 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 Y L + DI++ + +L +K +F+A VSHE+RTPLT I ++E + + Sbjct: 347 GYILLLQDITK----QQRLEEMRK----------EFVANVSHELRTPLTTIKSYAETLLD 392 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 R ++ + I+ + + +VNDLL++S++++ + N +P+ +D ++ I Sbjct: 393 GALDDSSVAR--QFLSVINDEADRMTRLVNDLLELSRLDNRETNWDKKPIRIDGVLTAVI 450 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 S + + +K + + ++P++ AD ++Q+ NILSNAI +TP GG+I + + Sbjct: 451 SKMMVSVRKKGLELECDLPEDLPKVFADSDKMEQVFQNILSNAIKYTPEGGRIFVKAENL 510 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + +V + +RDTG+G+ +L + + F ++ ++ + GTGLGL +A+ +V A+ G+ Sbjct: 511 GS-QVQVSIRDTGIGIPKEDLPRIFERFYRVDKTRSRQLGGTGLGLSIAREIVLAHEGEI 569 Query: 793 YIFSTPAKGTLIEIIFP 809 + S +GT + I P Sbjct: 570 KVESELGQGTEVIIKLP 586 >gi|312888745|ref|ZP_07748309.1| response regulator receiver sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311298745|gb|EFQ75850.1| response regulator receiver sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 539 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 81/244 (33%), Positives = 131/244 (53%), Gaps = 8/244 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ + +LS A + +K K FLA +SHEIRTPLT+IIG + ++K PL N Sbjct: 142 ELEKSRQELSEAVEQTQKIREAKEIFLANMSHEIRTPLTSIIGLNHLLKQ---SPL-NAD 197 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 E ++ S +L +VND+L+ +KI++GK+ ++ ++ V +L A EK Sbjct: 198 QQELIKLMEYSSQSLLTLVNDILESAKIDAGKITINRAETNIINLVQTICNLSSPIAKEK 257 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR 740 + + F ++P ILAD + QI LNI++NAI FT GG ++ + V+L+ Sbjct: 258 GLALSCHFDTDLPSAILADSLRLNQILLNIINNAIKFTTEGGVEVTLKAIQKEPNRVLLQ 317 Query: 741 --VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + DTG+G++ + K F Q + GTGLGL + K + + G+ + STP Sbjct: 318 FIITDTGIGISQSGISKLFNRFEQAEVKTWEKFGGTGLGLSIVKRISELKGGELTVLSTP 377 Query: 799 AKGT 802 +GT Sbjct: 378 GQGT 381 >gi|299145557|ref|ZP_07038625.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 3_1_23] gi|298516048|gb|EFI39929.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 3_1_23] Length = 1476 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 130/248 (52%), Gaps = 7/248 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG-FSEVIKNQRFGPLGNPRYIEYAN 628 K+ + I +K S K F +SHE+RTPLT I G E+ + ++ P G ++Y + Sbjct: 930 KMKNDIYIEQKVSEMKIKFFTNISHELRTPLTLIKGPIQELREREKLSPKG----LQYVD 985 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 ++++ N +L +VN +LD KI++GKM LH + +E ++ ++ + E I Sbjct: 986 LMEKNTNQMLQLVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTF 1045 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVG 747 + + AD + + NI+SNA FT SGG I I+T T + + +RV D GVG Sbjct: 1046 QLPDEPIMVWADKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVG 1105 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +L + + F Q N++ +GTG+GL L+K +V+ + G+ S +G + I+ Sbjct: 1106 IPQNKLTEIFERFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVF-IV 1164 Query: 808 FPLYDTSH 815 L D H Sbjct: 1165 ELLMDKEH 1172 >gi|254562560|ref|YP_003069655.1| integral membrane sensor hybrid histidine kinase [Methylobacterium extorquens DM4] gi|254269838|emb|CAX25816.1| putative integral membrane sensor hybrid histidine kinase [Methylobacterium extorquens DM4] Length = 1059 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 139/250 (55%), Gaps = 10/250 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I+ K KL AK+ AE + KS ++ +SHE+RTPL A++G++++++ P Sbjct: 571 EIAAHKVTDAKLQQAKETAEAANLAKSRYVVGISHELRTPLNAVLGYAQLLEGDPSIP-- 628 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 PR I RS + +++ LLDIS++E+G++ H + L + +++ + +V+L A Sbjct: 629 EPRR-NGIRVIRRSAQHLSGLIDGLLDISRMEAGRLQTHRNEIRLADFLAQIVDMVRLQA 687 Query: 680 NEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + R + +P ++A D + ++QI LN+LSNAI FTP G++ + T+ + + Sbjct: 688 EGAGLRFRFTRPEILPAVVATDEKRLRQILLNLLSNAIKFTPE-GEVALEMTY-RGQVAV 745 Query: 739 LRVRDTGVGMTNYELEKAMKPF--GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +RDTG+G+ +L + +PF G +P ++ GTGLGL +A + G+ + S Sbjct: 746 FTIRDTGLGIPEADLGRIFEPFERGSMPAARA--APGTGLGLTIAHLLSQVMGGEITVES 803 Query: 797 TPAKGTLIEI 806 +GT + Sbjct: 804 RVGEGTCFRV 813 >gi|240142104|ref|YP_002966614.1| putative multi-sensor Histidine kinase [Methylobacterium extorquens AM1] gi|240012048|gb|ACS43273.1| putative multi-sensor Histidine kinase [Methylobacterium extorquens AM1] Length = 970 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 130/249 (52%), Gaps = 7/249 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T D++E ++ L AK+ AE + K++F+A +SHEIRTPL ++G + ++ + Sbjct: 459 TYTDVTERERTARALETAKEAAEAGNRAKTEFVATMSHEIRTPLNGVLGMASLLSDT--- 515 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL + R Y I R G+ +L IV+D+LD SK+E+G+++L P E +++ Sbjct: 516 PL-DDRQRHYVGTIRRCGDALLSIVDDILDFSKLEAGRIDLEHIPFETSEVARSVSDILE 574 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A EK + I S + P R D ++Q+ N++ NA+ FT G I +T + Sbjct: 575 PKAAEKGLAITYSEDVDFPKRSCGDPNRLRQVLWNLVGNALKFTDEGWISIEATVVKGPD 634 Query: 736 EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 LR V DTG+G+ + + F Q S R GTGLGL + + +V+A G+ Sbjct: 635 GPRLRYSVSDTGIGIPEEARHRLFRQFEQTDPSVSRRFGGTGLGLAIVRRIVEAFGGELG 694 Query: 794 IFSTPAKGT 802 + S KG+ Sbjct: 695 VVSETGKGS 703 >gi|291568216|dbj|BAI90488.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 1262 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 88/274 (32%), Positives = 147/274 (53%), Gaps = 31/274 (11%) Query: 565 KQEKNKLSHAKKIAEKESSH--------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 KQ++ KL+ + IA +E+ KS FLA +SHE+RTPL AI+GFS+++ + Sbjct: 772 KQQRLKLA-TQNIALEEARRAADAANRAKSTFLANMSHELRTPLNAILGFSQLMAD---- 826 Query: 617 PLGNPRYIEYAN---YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 NP + E + I+RSG +L+++ND+LD+SKIE+GK+ P L + Sbjct: 827 ---NPIFAEGSQELAIINRSGEHLLELINDILDLSKIEAGKITFEIHPFDLHRLLETLEE 883 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-- 730 + +L A + I++ + +PR +L D + ++Q+ +N+L+NAI FT +G + + T Sbjct: 884 MFKLKAANQDIILTINRPIYLPRYVLGDEKKLRQVLINLLANAIKFTIAGEVTLYTKTLP 943 Query: 731 -----HTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 T + V+++ V DTG G+++ E+ F Q + + EGTGLGLP+++ Sbjct: 944 TPKDAETDSNTVLMQFMVEDTGPGISSEEINALFDAFVQTETGRYSQ-EGTGLGLPISRK 1002 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL-YDTSHP 816 V G + ST G+ PL T+ P Sbjct: 1003 FVKLMGGDITVDSTRGVGSKFSFEIPLDLATAQP 1036 >gi|240849710|ref|YP_002971098.1| sensor histidine kinase protein [Bartonella grahamii as4aup] gi|240266833|gb|ACS50421.1| sensor histidine kinase protein [Bartonella grahamii as4aup] Length = 821 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 103/397 (25%), Positives = 197/397 (49%), Gaps = 30/397 (7%) Query: 429 PQNGIEP--EDVDTRIN-KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 PQ G+ E++ +I+ +R+ + L+ S+G+ + +G + +N A+SKL+ Sbjct: 433 PQGGVTWLYENLTEKIDLERRYNTLIKIQGETLDKLSEGVVVFGTDGRLRLSNPALSKLW 492 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT---LGSTKEEKLLSLR 542 P + + +E + + + + +L L Q ++ T G ++ + S R Sbjct: 493 SLP--------YNLLVEGTHITQLQSHCS---ALTLGQEWDQFTKFITGFAEKRETYSGR 541 Query: 543 IIIKK--------LPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 I +K +P + LT ++++ L + E +++F+ VS Sbjct: 542 IDLKNDMIIDYTLVPLPDGQTMLTFVNVTDTVHVARALQERNEALESADRLRNEFVQHVS 601 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 +E+RTPLT IIGFS+++++Q FG + N R EY +I +L+IVND+LD++ +++G Sbjct: 602 YELRTPLTNIIGFSDILRDQIFGSI-NKRQQEYLGHIHSESGTLLNIVNDILDLATLDAG 660 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713 M L + V++ +A+ +A++ ++ N + I + + ++ I AD + + QI +N+LS Sbjct: 661 IMELDIKSVNIADAMIQAVARIEDRLNGRHITLLQQISPSLNSISADEKRLHQIFVNVLS 720 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 NAI+F I ++ ++ V + G + L++ K F +S G Sbjct: 721 NAINFATEASTIEFCVDE-QDDNIVFSVHNEGSDIPEDVLDRIFKRFS--SHSHHGGRAG 777 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GLGL L K+ V+ + G I + KGT ++ FPL Sbjct: 778 AGLGLSLVKSFVELHGGHVEILTGSGKGTTVKCFFPL 814 >gi|296120946|ref|YP_003628724.1| ammonium transporter [Planctomyces limnophilus DSM 3776] gi|296013286|gb|ADG66525.1| ammonium transporter [Planctomyces limnophilus DSM 3776] Length = 1322 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 104/378 (27%), Positives = 179/378 (47%), Gaps = 43/378 (11%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGY--------PVEDI---------LRKPFT 498 SI E +GI + GI ++ N A++K++GY + DI R F Sbjct: 478 SIFENAVEGIFQTSPSGIYMNVNPALAKIYGYDSPNDLIGSIGDISKDLYVDPQRRAEFC 537 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK--EEKLLSLRIIIKKLPFSSCYSL 556 +E T + +++E+ D GST E ++ ++ + Y Sbjct: 538 RLIE--TEGAVKGFVSEVYRRD----------GSTIWISENAHPVKNAAGRILY---YEG 582 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 ++ D++E ++ + + K AE + KS FLA++SHEIRTPL +IG +++K Sbjct: 583 SVEDVTEVRRAE-QWRAEKAEAEAANEAKSQFLAKMSHEIRTPLNGVIGMLDLLKATSL- 640 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + R Y S + +L ++ND+LD+SKIE+G+M L L + V + + Sbjct: 641 ---DDRQKRYVTICRSSADTLLGLINDILDLSKIEAGRMELALVDFDLHQLVEDISEMFV 697 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHT 732 A K + + A ++P RI D ++QI +N++ NA+ FT G +I ++ + T Sbjct: 698 HRAEGKGVELACHIAPDVPQRIEGDPERLRQILVNLVGNALKFTSVGYVLIKVSMAQSPT 757 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + + V+DTG+G++ + +K +PF Q + R GTGLGL + + + D G Sbjct: 758 GEHRLQIHVKDTGIGISPAQQQKLFQPFTQADVTTSRRFGGTGLGLSICRQLADLMQGSI 817 Query: 793 YIFSTPAKGTLIEIIFPL 810 I S GT + PL Sbjct: 818 QIESAVGVGTTFTVDLPL 835 >gi|296137700|ref|YP_003644944.1| Conserved hypothetical protein containing histidine kinase domain [Salinibacter ruber M8] gi|295981869|emb|CBH22827.1| Conserved hypothetical protein containing histidine kinase domain [Salinibacter ruber M8] Length = 1618 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 83/253 (32%), Positives = 125/253 (49%), Gaps = 26/253 (10%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG---PLGNPRYIEYANYIDRSGNLVL 638 S KS LA +SHEIRTPLT+IIGF+E++ + G P +P YA+ I+RSG +L Sbjct: 1361 SRLKSALLANMSHEIRTPLTSIIGFAEMLGREAAGLELPEESP-LPGYASTIERSGKRLL 1419 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 + +N +L++SK+++G+M + PV L E A ++ A EK I + + P L Sbjct: 1420 ETLNGVLNLSKLQAGQMEMEAGPVDLSEQARLAAGELRPEAEEKEISLELETGGD-PAAL 1478 Query: 699 --ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-------------------V 737 AD V+ + N+LSNAI +T GG + + ++E Sbjct: 1479 AEADEGGVQIVLRNLLSNAIKYTDEGGVTVRTYREDGDQEDGDQKDRDQEDGNPQEDIWA 1538 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 +L V DTG+GM E KPF Q EGTG+GL + + V G + + Sbjct: 1539 VLEVEDTGIGMDPEVAEGLFKPFRQASEGLSREYEGTGIGLAVTREAVAQMGGSVEVDTQ 1598 Query: 798 PAKGTLIEIIFPL 810 +GT + + PL Sbjct: 1599 KGQGTCMTVRLPL 1611 >gi|294678370|ref|YP_003578985.1| DMSO/TMAO-sensor hybrid histidine kinase [Rhodobacter capsulatus SB 1003] gi|294477190|gb|ADE86578.1| DMSO/TMAO-sensor hybrid histidine kinase [Rhodobacter capsulatus SB 1003] Length = 817 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 127/240 (52%), Gaps = 9/240 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K+DFLA +SHEIRTP+ +I G E+++ PR Y IDRS ++ IV+++ Sbjct: 308 KTDFLATMSHEIRTPIHSIGGIVELLRQDDL----PPRAAGYVEAIDRSARVLTSIVSEI 363 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQ-LYANEKRILIRTSFANNIPRILADLRS 703 LD S+IE+G M L L E +E +++ L A + +++ ++P + D Sbjct: 364 LDYSRIEAGGMMLERVDFPLGEVTAEVARVIEPLVARKPGLVLHVDAPADLPCVSGDPAK 423 Query: 704 VKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPF 760 ++QI LN+ NA+ FT +G +I + S V++R VRDTG G+ + LE+ +PF Sbjct: 424 LRQILLNLAGNAVKFTEAGAVVIGLDLISRSPGRVLVRFSVRDTGPGIASERLEQIFRPF 483 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL-YDTSHPHDC 819 Q +S + + GTGLGL +++ + + + + S P +G+ + L DC Sbjct: 484 TQSDSSIERKHGGTGLGLAISRRLAELMGAELTVESHPGEGSCFRLAVSLDLAARQGADC 543 >gi|237720732|ref|ZP_04551213.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229449567|gb|EEO55358.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1465 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 130/248 (52%), Gaps = 7/248 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG-FSEVIKNQRFGPLGNPRYIEYAN 628 K+ + I +K S K F +SHE+RTPLT I G E+ + ++ P G ++Y + Sbjct: 918 KMKNDIYIEQKVSEMKIKFFTNISHELRTPLTLIKGPIQELREREKLSPKG----LQYVD 973 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 ++++ N +L +VN +LD KI++GKM LH + +E ++ ++ + E I Sbjct: 974 LMEKNTNQMLQLVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTF 1033 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVG 747 + + AD + + NI+SNA FT SGG I I+T T + + +RV D GVG Sbjct: 1034 QLPDEPIMVWADKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVG 1093 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +L + + F Q N++ +GTG+GL L+K +V+ + G+ S +G + I+ Sbjct: 1094 IPQNKLTEIFERFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVF-IV 1152 Query: 808 FPLYDTSH 815 L D H Sbjct: 1153 ELLMDKEH 1160 >gi|319936949|ref|ZP_08011359.1| sensor protein [Coprobacillus sp. 29_1] gi|319807885|gb|EFW04464.1| sensor protein [Coprobacillus sp. 29_1] Length = 908 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 138/251 (54%), Gaps = 21/251 (8%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A +IA+ +S K+DFL+ +SH+IRTP+ AI+G + + + P + + + I Sbjct: 385 LEDAYQIAKIANSAKTDFLSSMSHDIRTPMNAIVGMASIAQAHINFP---EKVSDCLHKI 441 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 S +L ++N++LD+SKIESGK++L E V+L E + + + + +EK + F Sbjct: 442 KISSRHLLSLINEVLDMSKIESGKIDLMLEDVNLPELIDDVSDMCRALIDEK----QQDF 497 Query: 691 ANNIPRI-----LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL------ 739 + I RI +AD +KQI +N++SNA+ +TP GGQ IS + +IL Sbjct: 498 SIVIGRIKHEKVVADGDRLKQIFMNLISNAVKYTPRGGQ--ISLVINELDSLILDKGRFE 555 Query: 740 -RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + D G+GM+ L +PF + +++ + +GTGLG+ + + +V+ G + S Sbjct: 556 FKFYDNGIGMSEDFLPHIFEPFSRAEDTRINKIQGTGLGMAITENIVNMMNGTIEVESQL 615 Query: 799 AKGTLIEIIFP 809 KGT+ + P Sbjct: 616 GKGTIFTVSIP 626 >gi|265762626|ref|ZP_06091194.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263255234|gb|EEZ26580.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|301162192|emb|CBW21737.1| putative two-component system sensor histidine kinase/response regulator fusion protein [Bacteroides fragilis 638R] Length = 637 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 91/268 (33%), Positives = 132/268 (49%), Gaps = 24/268 (8%) Query: 549 PFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 PF L + HDI + + +L AK+ AE+ KS FLA +SHEIRTPL AI+GFS Sbjct: 247 PFEGNKVLALIHDIGDRMRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFS 306 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 E+I EY I ++ NL+L ++ND+LD+S+IESGK +H + Sbjct: 307 EIIALTE----DEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQ------- 355 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR------ILADLRSVKQIALNILSNAIHFTPS 721 ++E LV R+ ++ N+ R I D V Q+ N LSNAI T Sbjct: 356 LTEMSGLVDEVDKVHRLKMKKGVKLNVIRPSEEIWISTDRNRVTQVLFNFLSNAIKNTIE 415 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 G I E V L V DTG G++ +L F ++ + Q GTGLGLP+ Sbjct: 416 GS--ITFGLVKEEEWVKLYVTDTGCGISKEKLPLIFTRFEKLNDFVQ----GTGLGLPIC 469 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K++V+ G+ + S +G+ + P Sbjct: 470 KSIVERLGGRIEVESELGQGSTFILYLP 497 >gi|253563504|ref|ZP_04840961.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251947280|gb|EES87562.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] Length = 635 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 91/268 (33%), Positives = 132/268 (49%), Gaps = 24/268 (8%) Query: 549 PFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 PF L + HDI + + +L AK+ AE+ KS FLA +SHEIRTPL AI+GFS Sbjct: 245 PFEGNKVLALIHDIGDRMRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFS 304 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 E+I EY I ++ NL+L ++ND+LD+S+IESGK +H + Sbjct: 305 EIIALTE----DEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQ------- 353 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR------ILADLRSVKQIALNILSNAIHFTPS 721 ++E LV R+ ++ N+ R I D V Q+ N LSNAI T Sbjct: 354 LTEMSGLVDEVDKVHRLKMKKGVKLNVIRPSEEIWISTDRNRVTQVLFNFLSNAIKNTIE 413 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 G I E V L V DTG G++ +L F ++ + Q GTGLGLP+ Sbjct: 414 GS--ITFGLVKEEEWVKLYVTDTGCGISKEKLPLIFTRFEKLNDFVQ----GTGLGLPIC 467 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K++V+ G+ + S +G+ + P Sbjct: 468 KSIVERLGGRIEVESELGQGSTFILYLP 495 >gi|209526093|ref|ZP_03274625.1| histidine kinase [Arthrospira maxima CS-328] gi|209493481|gb|EDZ93804.1| histidine kinase [Arthrospira maxima CS-328] Length = 1064 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/270 (29%), Positives = 138/270 (51%), Gaps = 12/270 (4%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 F + + DI+E + +L+ + + K +FLA +SHE++TPLTA++G S + Sbjct: 317 FDKWWLIIAQDITEQYRVAQELTAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSSL 376 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 +K++ G L + R +YA I +SG ++ +VND+LD+++IE+G++ L E V++ Sbjct: 377 LKDKALGELSD-RQAKYAKLIHQSGRHLMMVVNDILDLTRIETGQLELTPEGVNIQTVCD 435 Query: 670 EAISLVQLYANEKRI------LIRTSFANNI----PRILADLRSVKQIALNILSNAIHFT 719 A+ V + I L F+ I I AD ++Q+ +N++SNA FT Sbjct: 436 RALEAVLHLHQQGDIKDSQSSLGSQKFSIEIEPGLETIEADELRLRQMLINLISNAFKFT 495 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 P GG + + + ++ V DTG+G+ + + F Q+ + + EGTGLGL Sbjct: 496 PDGGYMGLRVNRW-EDWIVFTVWDTGIGIPEQKQHLIFEKFQQLESPLNRQFEGTGLGLV 554 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L + + + G S KGT ++ P Sbjct: 555 LCQRLARLHGGDISFISHQGKGTEFTLLLP 584 >gi|237746860|ref|ZP_04577340.1| two-component system sensor histidine kinase [Oxalobacter formigenes HOxBLS] gi|229378211|gb|EEO28302.1| two-component system sensor histidine kinase [Oxalobacter formigenes HOxBLS] Length = 821 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 140/257 (54%), Gaps = 20/257 (7%) Query: 566 QEKNKLSH-AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +E++++ H A + AE+ + KSDFL+++SH+IRTP+ AIIG + + + R Sbjct: 285 EERSEMLHNALQAAEQANKAKSDFLSQMSHDIRTPMNAIIGMTAIAGSHLD---DKDRVR 341 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR- 683 + I S L+L ++N++LD+S+IESG++++ E SL+E + ++++Q KR Sbjct: 342 DCLQKITVSSRLLLGLINEVLDMSRIESGRISITEEEFSLNEMLQNIVTIIQPSIMAKRH 401 Query: 684 ---ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----- 735 I R N+ D + ++Q+ LNILSNA+ +TP GG+I++S ++ Sbjct: 402 AFDIQARELQHENVT---GDPQHIQQVFLNILSNAVKYTPDGGKILLSIREKPSQTAGYG 458 Query: 736 --EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E + RD G GM + L K KPF + ++ +GTGLG+ ++K +V G Sbjct: 459 CYEFVF--RDNGYGMKSEFLRKIFKPFERAEDAAVRAVQGTGLGMAISKNIVQMMDGDIQ 516 Query: 794 IFSTPAKGTLIEIIFPL 810 + ST G+ + L Sbjct: 517 VESTYGNGSTFTVTLSL 533 >gi|197337907|ref|YP_002157653.1| sensor protein LuxQ [Vibrio fischeri MJ11] gi|197315159|gb|ACH64608.1| sensor protein LuxQ [Vibrio fischeri MJ11] Length = 575 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/240 (33%), Positives = 133/240 (55%), Gaps = 13/240 (5%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K+ AE DF+A ++HE+RTPL ++G +E++++ + N + I +SG Sbjct: 203 KRRAENSERATRDFVAMINHELRTPLNGLLGSAELMEDTQITDYQN----KLLETIHQSG 258 Query: 635 NLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 ++ I+NDLLD SK+ +G + L +F+P L + + E I Q+ EK + A Sbjct: 259 QMLRIIINDLLDFSKMSAGMLELKVANFKPCILVKTI-EQIFTPQMA--EKCLRFDIHIA 315 Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 +N+P+ ++ D+ V+QI +N++ NA FT SG I + N ++L V DTG G+ Sbjct: 316 DNLPQSLMGDIDRVQQILVNLVGNAFKFTKSG-HISLKVGWQENA-LVLIVSDTGCGIPQ 373 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + +PF Q+ NS Q + EGTGLGL + K +VDA G+ S +G+ ++ PL Sbjct: 374 DKQKLLFEPFTQVDNSSQRQFEGTGLGLSICKLLVDAMSGELSFKSELGEGSEFQVKLPL 433 >gi|83310531|ref|YP_420795.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82945372|dbj|BAE50236.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 631 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/276 (29%), Positives = 132/276 (47%), Gaps = 7/276 (2%) Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 ++K L + S + E K + L A+ AE+ + KS FLA + HEIRTPL + Sbjct: 109 LVKGLGDAFILSRVVRYAIERKMGEEVLREARDSAEQAARAKSVFLAMMGHEIRTPLNGV 168 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 +G + ++ +PR +A + SG L+L +VND+LD S++++ M L EP Sbjct: 169 LGMARLLLETDL----DPRQKSFAETLVSSGELLLGLVNDILDFSRLDAEGMTLAVEPFD 224 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG 722 + + V E ++ A EK + + F + R++ D ++QI N++ NAI FT G Sbjct: 225 VLDTVEEVRLVLASRAAEKDLALSCRFGAGVRRVVSGDRLRLRQILFNLVGNAIKFTDRG 284 Query: 723 GQIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 G I + ILR V+D+G+G+ + F Q + R +G GLGL + Sbjct: 285 GVEIGVEPLAVEQGQILRFSVKDSGIGIAPEIGAQLFTEFWQGDSGAARRFDGAGLGLAI 344 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 K + D G S P +G+ + PL P Sbjct: 345 CKRLTDLMGGVIGYDSLPDRGSTFRVDLPLPPAESP 380 >gi|51893536|ref|YP_076227.1| two-component hybrid sensor and regulator [Symbiobacterium thermophilum IAM 14863] gi|51857225|dbj|BAD41383.1| two-component hybrid sensor and regulator [Symbiobacterium thermophilum IAM 14863] Length = 755 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 125/231 (54%), Gaps = 2/231 (0%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K++F+A VSHE+RTP+T+I G ++ G L P E + + ++ ++ND+ Sbjct: 269 KTEFIATVSHELRTPMTSIKGALGLVLGGAAGDL-PPEARELLTIARNNTDRLIRLINDI 327 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LDIS+IE+GKM + P+S + V A+ + +A ++ I + T + R++AD + Sbjct: 328 LDISRIEAGKMEIRRAPLSPADVVRRAVEEMNAFARQRNITLTTDVPEGLARVMADADRL 387 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 Q+ N++SNAI F+P G +++I T + V V D G G+ + + F ++ Sbjct: 388 HQVLDNLISNAIKFSPQGSEVLIRARETGD-GVRFDVIDRGPGIPADQTGLIFERFYRVD 446 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 N+ + GTGLGL + KA+V+ + G+ ++ S +G+ P+ H Sbjct: 447 NAASRKTGGTGLGLTICKAIVEEHGGQIWVESALGEGSTFSFTIPVEPGGH 497 >gi|145613814|ref|XP_363416.2| hypothetical protein MGG_01342 [Magnaporthe oryzae 70-15] gi|145020837|gb|EDK04966.1| hypothetical protein MGG_01342 [Magnaporthe oryzae 70-15] Length = 1341 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 83/257 (32%), Positives = 130/257 (50%), Gaps = 10/257 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+ E +E+ +L + A++ S KS FLA +SHEIRTP+T +IG SE++ + G Sbjct: 692 DLVEQAKERRQLVANEAAAKEASRLKSQFLANMSHEIRTPITGVIGMSELLLDLELGDEE 751 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 EY I RS N +L ++ND+LD SK+ESG +++ SL V + ++ A Sbjct: 752 R----EYGENIYRSANALLAVINDILDFSKVESGHLDIEEVQFSLSVIVGDVNKMLSFAA 807 Query: 680 NEKRILIRTSFANNIPR---ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 K + ++ A++I +L D V+QI N+L+N+I FT G + Sbjct: 808 ERKNLDFQSEIASDIEEDLVVLGDPGRVRQIITNLLTNSIKFTKQGYVRFSVVKERETPD 867 Query: 737 VI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +I V DTG+G+ + +PF Q S R GTGLGL ++K +++ G+ Sbjct: 868 IIEIKFVVEDTGIGIDAQVRSRLFQPFSQGDASTARRFGGTGLGLTISKNLLELMKGRMT 927 Query: 794 IFSTPAKGTLIEIIFPL 810 + S KGT P Sbjct: 928 LESAEGKGTTATFWIPF 944 >gi|254474100|ref|ZP_05087492.1| sensory/regulatory protein RpfC [Pseudovibrio sp. JE062] gi|211956796|gb|EEA92004.1| sensory/regulatory protein RpfC [Pseudovibrio sp. JE062] Length = 867 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 122/225 (54%), Gaps = 8/225 (3%) Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 + FL VSHE+RTPL AIIG ++I++ + +P + A I SG+ +L ++N +L Sbjct: 200 TQFLTAVSHELRTPLNAIIGMGDLIQDTKL----DPEQRDMAKTIQYSGSSLLSMINGIL 255 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSV 704 D S+IESG+M ++ ++ + E +VQ A K ++I + +P L D R + Sbjct: 256 DFSRIESGRMIVNRTVFDMNSILREVTQIVQGQARGKGLIISRYVDSKLPPFLVGDARHI 315 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFG 761 +++ LNI NA+ FT G I +T N ++L V+DTG+G++ + + F Sbjct: 316 REVLLNIAGNAVKFTEEGSVSISATCKEMNGGKVSLLLEVKDTGIGISEDAQGRIFERFT 375 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 Q S R GTGLGL + + +V A G+ + S P +G++ I Sbjct: 376 QADESIVDRFGGTGLGLSIVREVVRAMGGEVKVSSQPGQGSMFTI 420 >gi|91773017|ref|YP_565709.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91712032|gb|ABE51959.1| HATPase domain-containing multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 631 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 125/226 (55%), Gaps = 3/226 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K FL+ VSHE++TPLT+I G++E+I ++ G L + E + R+ N + +V+ L Sbjct: 407 KDRFLSNVSHELKTPLTSIKGYTELIYDESLGTLSEQQK-EVEKTVLRNANRLKRLVDSL 465 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 L IS+ +SG + FEPVS+ E V + +++ EK++ + N+IP I D + Sbjct: 466 LYISRAQSGNVQYLFEPVSIVEIVEMTLQDLKIQIEEKKLAVEKDIPNDIPTINGDRDKL 525 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 + N++ N+I FTP GG + T +E + + ++D G+G+ + + F QI Sbjct: 526 TDMLTNMVDNSIKFTPEGGSLKF-TIKEEDEFIHIVLKDNGIGIPPDMIPMLFQRFYQID 584 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA-KGTLIEIIFP 809 S+ + GTGLGL + K +V A+ GK ++ S KGT + I P Sbjct: 585 ASRTRKYGGTGLGLYICKEIVTAHKGKIWVESKGENKGTEMHIQLP 630 >gi|160893712|ref|ZP_02074496.1| hypothetical protein CLOL250_01266 [Clostridium sp. L2-50] gi|156864697|gb|EDO58128.1| hypothetical protein CLOL250_01266 [Clostridium sp. L2-50] Length = 583 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 87/307 (28%), Positives = 157/307 (51%), Gaps = 24/307 (7%) Query: 532 STKEEKLLSLRIIIKKLP--FSSCY--------SLTMHDISEWKQEKNKLSHAKKIAEKE 581 TKE L+ + I ++ L F++ ++ + DI++ K +NKLS A A Sbjct: 141 GTKEGDLMDVEITMESLQKVFNTVMYKSEADYINMVVIDITDQKDTENKLSKAIVDANAA 200 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL---VL 638 +++FLA +SHEIRTP+ I+G ++ + + +Y + + + N +L Sbjct: 201 YKTQAEFLANMSHEIRTPINGILGMLQLT------LMADDLQADYRDNLVTAKNCADTLL 254 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++ND+LDISK+E+GK + E + +A+ E ++ AN K + + SF NNIP+++ Sbjct: 255 RLINDILDISKLEAGKYKIKEETFDIKQAIEETVAAQVPLANNKGLQLDCSFGNNIPKLV 314 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE---EVILRVRDTGVGMTNYEL 753 D + ++Q+ +LSNAI FT G ++ I++ E ++ + V DTG+G++ + Sbjct: 315 KGDGQRIQQVLNCLLSNAIKFTSEGSVRVKIASMDMEGENKVKIRMAVADTGIGISEANM 374 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 K F Q+ +S R G+GLGL + K +V+ G + S G+ + P+ Sbjct: 375 SKLFIRFSQVDSSDTRRYGGSGLGLVITKQIVELMGGNIQVQSKEDIGSTFIVEVPMKVV 434 Query: 814 SHPHDCI 820 D + Sbjct: 435 KASDDAL 441 >gi|186473035|ref|YP_001860377.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184195367|gb|ACC73331.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 1165 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/260 (29%), Positives = 138/260 (53%), Gaps = 9/260 (3%) Query: 565 KQEKNKLSHAKKIA------EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +Q+ LS ++A E+ S +KS+FLA +SHE+RTPL + + + +++ R G L Sbjct: 462 RQKAELLSAQGELAANAARLEQSSRYKSEFLANMSHELRTPLNSSLILARLLQENRTGNL 521 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + + YA I S + +L ++ND+LD+SK+E+G++ + E V+++ + + + Sbjct: 522 TDEQ-VRYAETIHASNSDLLVLINDILDLSKVEAGQITIDRELVAVESMLQSLREMFEPM 580 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A K + A +P I D + + QI N+LSNA+ FT G ++ ++ + + + Sbjct: 581 AAAKHLQFSVERAPGVPDMIFTDGQRITQILRNLLSNALKFTERG-EVALTVAASDADTL 639 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 VRDTG+G+ +LE + F Q S G+GLGL +++ G+ + S Sbjct: 640 RFDVRDTGIGIAADKLELIFEAFQQADGSTSRNYGGSGLGLSISREFARLLGGRVSVASE 699 Query: 798 PAKGTLIEIIFPLYDTSHPH 817 P KG++ + PL + H Sbjct: 700 PGKGSVFTLWLPLQGSVEAH 719 >gi|114776750|ref|ZP_01451793.1| Periplasmic Sensor Hybrid Histidine Kinase [Mariprofundus ferrooxydans PV-1] gi|114552836|gb|EAU55267.1| Periplasmic Sensor Hybrid Histidine Kinase [Mariprofundus ferrooxydans PV-1] Length = 841 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 86/258 (33%), Positives = 131/258 (50%), Gaps = 12/258 (4%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 KL HA AE + KS F+A +SHE+RTPL IIG S+++ + L N + + Sbjct: 182 QKLHHAIDAAEAANRAKSQFMANMSHELRTPLNGIIGMSDLLYST---SLSNEQK-RFTF 237 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I S L ++ +LD++K+E+GK+ L EP L + + ++L + A EK I I Sbjct: 238 VIKESAYHQLSLIERILDMAKLEAGKLELLHEPFDLHQLLHGTVALFEGQAKEKAIRIAL 297 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDT 744 + IP ++ D + +KQI LNI+ NA+ FT G + + + + + V+L+ V DT Sbjct: 298 RYDPEIPFALIGDPKHIKQILLNIVGNAVKFTEHGSVTLKVEASEVTEKNVVLQFTVTDT 357 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+GM+ + + F Q S R GTGLG +AK + + G + S GT Sbjct: 358 GIGMSEDVQGRIFEQFTQADASITRRFGGTGLGTTIAKNLTELMGGSISLKSRAGAGTTF 417 Query: 805 EIIFPLY----DTSHPHD 818 I PL TS P D Sbjct: 418 TINLPLSRQQPGTSEPRD 435 >gi|326942371|gb|AEA18267.1| phosphate regulon sensor protein phoR [Bacillus thuringiensis serovar chinensis CT-43] Length = 587 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 101/376 (26%), Positives = 182/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ +L++ Sbjct: 240 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEE--------YLDRLYYE 291 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 +H TEI+ L +E+I + K K + L + I++ F Sbjct: 292 SFHH--TEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 344 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 345 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 388 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + + + Sbjct: 389 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHM 447 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+GG + + Sbjct: 448 VLDNKAGEKEISLQVNVLKR-ASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDK 506 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 507 YNAYI-KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 565 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 566 VDSEVGEGTTFTVVLP 581 >gi|296505060|ref|YP_003666760.1| phosphate regulon sensor protein phoR [Bacillus thuringiensis BMB171] gi|296326112|gb|ADH09040.1| phosphate regulon sensor protein phoR [Bacillus thuringiensis BMB171] Length = 587 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 101/376 (26%), Positives = 182/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ +L++ Sbjct: 240 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEE--------YLDRLYYE 291 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 +H TEI+ L +E+I + K K + L + I++ F Sbjct: 292 SFHH--TEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 344 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 345 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 388 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + + + Sbjct: 389 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHM 447 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+GG + + Sbjct: 448 VLDNKAGEKEISLQVNVLKR-ASVIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDK 506 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 507 YNAYI-KVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 565 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 566 VDSEVGEGTTFTVVLP 581 >gi|116695030|ref|YP_840606.1| signal transduction histidine kinase [Ralstonia eutropha H16] gi|113529529|emb|CAJ95876.1| signal transduction histidine kinase containing a receiver domain (hybrid) and a NtrB-like sensor domain [Ralstonia eutropha H16] Length = 608 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/255 (30%), Positives = 132/255 (51%), Gaps = 7/255 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E +L+ AK AE + KS FLA VSHEIRTP+ AI G E+ + L Sbjct: 155 DLTERHDMLAELAQAKTEAEAANRAKSTFLASVSHEIRTPMNAITGMLELTLAR--CQLA 212 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 ++ +S +L +++D+LD+SK+E+GK ++H P SL V + + + A Sbjct: 213 EQERLQLVTA-HKSAVGLLALIDDILDLSKMEAGKFSIHPAPASLPGLVKDTLLIFGPVA 271 Query: 680 NEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNE 735 +K + + + + P D +QI N++SNA+ FT SG ++ + Sbjct: 272 AQKGLPLTSGIGVAVAPLHQVDALRFRQILANLVSNAVRFTDSGTIHVRLDALAPRDGVQ 331 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +V+L V DTG+G+ E + +PF Q+ + + GTGLGL + + + A G+ + Sbjct: 332 QVMLTVSDTGIGIPAGEQARMFEPFEQVHDRTRPHAGGTGLGLAICQRLASAMGGQISLS 391 Query: 796 STPAKGTLIEIIFPL 810 S P +GT + + PL Sbjct: 392 SQPGQGTRVMVTLPL 406 >gi|308050142|ref|YP_003913708.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799] gi|307632332|gb|ADN76634.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799] Length = 928 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/233 (32%), Positives = 129/233 (55%), Gaps = 9/233 (3%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S K+ FLA +SHEIRTP+ I+G +E++ + P+ Y + I RSG +LD++ Sbjct: 445 SRAKTTFLATMSHEIRTPMNGILGTAELMADADL----TPQQRHYLDVIHRSGEALLDVL 500 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILAD 700 ND+LD SKIE+G +++ EPV ++ V + + A +K + +R + + P L D Sbjct: 501 NDVLDYSKIEAGHLSVVEEPVVVEALVQSVLDTLASRAAQKGLSLRMAVRGTLAPAYLGD 560 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 ++Q+ LN++ NAI FT G++ ++ + + L V DTG+G+ +PF Sbjct: 561 HAKLRQVLLNLVGNAIKFTAQ-GEVRVALSADGG-TLRLAVEDTGMGIELERQRSVFEPF 618 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 Q + +Q GTGLGLP+++ + +A G + STP G++ + P +T Sbjct: 619 QQSRSGEQW--GGTGLGLPISRRLCEAMGGDLSLASTPGHGSVFTLTLPWPET 669 >gi|307310979|ref|ZP_07590624.1| histidine kinase [Sinorhizobium meliloti BL225C] gi|307322010|ref|ZP_07601389.1| histidine kinase [Sinorhizobium meliloti AK83] gi|306892348|gb|EFN23155.1| histidine kinase [Sinorhizobium meliloti AK83] gi|306899659|gb|EFN30286.1| histidine kinase [Sinorhizobium meliloti BL225C] Length = 826 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 81/254 (31%), Positives = 134/254 (52%), Gaps = 7/254 (2%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT +I++ + + L+ + K + K+DF+ VS+E+R+PLT IIGF++++K F Sbjct: 569 LTFVNITDSVRVERALTEKNEALRKADALKNDFVHHVSYELRSPLTNIIGFADLLKTPVF 628 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L N R EY ++I S +L+L IVND+LD++ +++G + L V+L + + + + Sbjct: 629 GEL-NERQAEYVDHIATSSSLLLTIVNDILDLATVDAGIVELELSEVNLIDLIDDVTQQM 687 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 E + +RT +N+ RI AD + +KQI + +L+NA +F P G I + + Sbjct: 688 GDRLVESGVSLRTDAPDNLGRITADQQRLKQIFIKLLTNAANFAPDGSTIELKCWREGS- 746 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V DTG G+ L F S RG G GLGL + ++ V + G I Sbjct: 747 DFAFSVTDTGPGIPQDVLNTVFNRF----ESYGQRG-GAGLGLSIVESFVSLHHGNVSIR 801 Query: 796 STPAKGTLIEIIFP 809 S +GT + P Sbjct: 802 SKEGEGTAVTCRIP 815 >gi|262199699|ref|YP_003270908.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262083046|gb|ACY19015.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 865 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 99/377 (26%), Positives = 176/377 (46%), Gaps = 40/377 (10%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL----RKPFTVFLEQN-----TPS 507 +L+ ++ + +++ + II NRA +L +++ + F +F E P Sbjct: 286 VLDTMTNALVVLDEDAIIEKVNRATCRLLACDESELVGARAERIFGMFSEATGAATPVPW 345 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567 H ++L RQ E ++++ + + + DI+E K+ Sbjct: 346 AEEHMQDAEIALFTRQ----------GEVRMVAFSGATMRDEGDAKIVCMLEDITERKRL 395 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN------QRFGPLGNP 621 +L AK AE + K+ FLA +SHE+RTPL AI+G+++++ + Q+ L Sbjct: 396 IAELIEAKGAAESATKAKTAFLANMSHELRTPLNAILGYAQMLGDDDNLTEQQRDALTTM 455 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 R SG + ++ DLLDISKIES +M L L + ++ ++ A Sbjct: 456 RT---------SGEHLATLLEDLLDISKIESDRMELAPSEFELTRFLDGLVAPFRMRAES 506 Query: 682 KRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K + + ++P ++ AD R ++Q+ +N+L NAI FT G + H + +V + Sbjct: 507 KELHFGYEISGDLPGMVRADERRLRQVLINLLGNAIKFTERGSVTFRANMH--DGKVRFQ 564 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG G+ +E PF Q +Q + EGTGLGL ++K +V+ G + S + Sbjct: 565 VEDTGRGIPGDAMEDIFAPFRQAGQPEQ-QVEGTGLGLAISKRLVELMDGSIGVESVLGR 623 Query: 801 GTLI--EIIFPLYDTSH 815 G++ E+ P + H Sbjct: 624 GSVFWAEVALPAVEGWH 640 >gi|218710564|ref|YP_002418185.1| hybrid sensory histidine kinase BarA [Vibrio splendidus LGP32] gi|218323583|emb|CAV19820.1| Sensor protein barA [Vibrio splendidus LGP32] Length = 937 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 134/252 (53%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K L N + +Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTH----LSNSQ-TDYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS N +L I+ND+LD SK+E+GK+ L P ++ E ++L A+EK + + Sbjct: 331 TIERSANNLLSIINDILDFSKLEAGKLALENIPFEFQASLEEVVNLQATNAHEKGLELTL 390 Query: 689 SFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDT 744 + P ++ D ++QI N++ N+I FT G I + +E+ I VRDT Sbjct: 391 KIDPKVPPGVVGDPLRIQQILTNLVGNSIKFTERGNIDISVELRSQSEDSIELQFMVRDT 450 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTF 510 Query: 805 EIIFPLYDTSHP 816 L T P Sbjct: 511 WFTLRLSTTDMP 522 >gi|124515967|gb|EAY57476.1| putative multi-sensor hybrid histidine kinase [Leptospirillum rubarum] Length = 851 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/246 (32%), Positives = 121/246 (49%), Gaps = 10/246 (4%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 KL + A + KS FLA +SHE+RTPL I+G SE+++ Q +PR E N Sbjct: 182 TKLEKLIEAANAANQSKSRFLANMSHELRTPLNGIMGLSELLREQ-----ASPRQNELLN 236 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + S + DI++ +LD S++E+G+M + + + V+E +S + A +K + + Sbjct: 237 TLQGSARHLSDIISKILDFSRLEAGRMTVSLVTFDVGQVVAETVSALLPLARQKNLPVTV 296 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII----ISTTHTSNEEVILRVRD 743 P L D +KQI N+L NAI FT SG + + T+ T V V D Sbjct: 297 LMDARFPSSLRGDPFHLKQILTNLLGNAIKFTESGEVALTVTPVLTSDTRELSVRFEVSD 356 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ E + + F Q +S R G GLGL + + +VD GK S KG++ Sbjct: 357 TGIGIAEEEKSRIFESFSQGDDSVTKRYGGAGLGLAITRQLVDLEKGKLGFLSHSGKGSI 416 Query: 804 IEIIFP 809 P Sbjct: 417 FWCTIP 422 >gi|94314629|ref|YP_587838.1| PAS/PAC sensor hybrid histidine kinase (bvgS-like) [Cupriavidus metallidurans CH34] gi|93358481|gb|ABF12569.1| PAS/PAC sensor hybrid histidine kinase (bvgS-like) [Cupriavidus metallidurans CH34] Length = 1040 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 134/249 (53%), Gaps = 8/249 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E +Q +L+ AK AE + KS FLA +SHEIRTP+ AI+G E+ + P Sbjct: 621 DMTERQQMVTELASAKDRAEAANRAKSAFLASISHEIRTPMNAILGMLELTLQDKRLPDD 680 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + +E A S ++ +++D+LD SK+E+GK L +P L + + + SL L A Sbjct: 681 DRLQVETAQ---ESAKSLIGLIDDILDASKMEAGKFVLTPQPAPLRQLIGDVTSLFGLAA 737 Query: 680 NEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTS--NE 735 + K + + + + P + D KQ+ N++SNA+ FT G +I + T+ + + Sbjct: 738 SRKGVQLEAIVDDAVAPCHMVDPLRFKQVLNNLVSNAVRFTDRGSVVIRLGATNLTPDCQ 797 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V DTG G+ L+K +PF QI ++++ G GTGLGL + + +V G I Sbjct: 798 SLTFSVSDTGTGIPEDGLKKLFQPFTQIGDTKRSAG-GTGLGLSICQRLVTKMHGTIGIT 856 Query: 796 STPAKGTLI 804 S KGT + Sbjct: 857 SEVGKGTTV 865 >gi|186682678|ref|YP_001865874.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465130|gb|ACC80931.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1403 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 83/279 (29%), Positives = 136/279 (48%), Gaps = 52/279 (18%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK+ AE + KS+FLA +SHEIRTP+ A+IG ++++ + P+ ++ + Sbjct: 663 LEQAKRQAEAANRAKSEFLAMMSHEIRTPMNAVIGMTDLLLDTDL----TPQQQDFVETV 718 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG+ +L I+ND+LD SKIESGK+ L +P L V +AISL+ A +K I + Sbjct: 719 RSSGDALLTIINDILDFSKIESGKLELEEQPFDLRACVEQAISLLAPKAAQKNIELVYLI 778 Query: 691 ANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII----------------------- 726 +P +I+ D+ ++Q+ +N+L+NAI FT G ++ Sbjct: 779 QPQVPTQIVGDMTRLRQVLMNLLNNAIKFTERGEVVLSVELGAGDSVKQGENSSPLHPSL 838 Query: 727 ------------ISTTHTSNE------------EVILRVRDTGVGMTNYELEKAMKPFGQ 762 +T TS+ ++ ++DTG+G+T ++E+ PF Q Sbjct: 839 VRLRPSLREAAPTTTLRTSSRQARPSASSESPIQIQFAIKDTGIGITPEKIERLFHPFTQ 898 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 S R GTGLGL ++K + G ++ S G Sbjct: 899 ADVSMTRRYGGTGLGLVISKRLSKMMGGTLWVESQGIVG 937 >gi|23014940|ref|ZP_00054733.1| COG0784: FOG: CheY-like receiver [Magnetospirillum magnetotacticum MS-1] Length = 1179 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/240 (32%), Positives = 133/240 (55%), Gaps = 16/240 (6%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ S +KS+FLA +SHE+RTPL +++ + + + G L + + +E A I SG +L Sbjct: 514 EQASRYKSEFLANMSHELRTPLNSVLILARDLADNETGTLSDDQ-VESARIIHESGAHLL 572 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL-------YANEKRILIRTSFA 691 ++ND+LD+SK+E+GKM+L +PV++ A L Q+ A +K + A Sbjct: 573 ALINDVLDLSKVEAGKMSL--DPVTIATA-----DLAQVIRGRFGPVAADKGLEFTVESA 625 Query: 692 NNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 ++PR + AD ++QIA N++SNAI FTP GG + + + L V DTG+G+ Sbjct: 626 PDLPRTMKADRGKIEQIANNLVSNAIKFTPEGGVAVRLALDHDGQALALSVADTGIGILP 685 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + ++ F Q +S + GTGLGL +++ + G + S +G++ ++ PL Sbjct: 686 EDRQRVFAAFEQADSSTSRQFGGTGLGLTISRRLARLMGGDITLESNGDRGSVFTLLMPL 745 >gi|318607514|emb|CBY29012.1| secretion system regulator: Sensor component [Yersinia enterocolitica subsp. palearctica Y11] Length = 926 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/259 (32%), Positives = 137/259 (52%), Gaps = 13/259 (5%) Query: 559 HDISEWKQEKNKLSHAK-KIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 +D E K ++ L+ AK K+A ++++H KS L +SHEIRTPL +G E+++N Sbjct: 370 YDTLEMKVKERTLALAKSKLAAEQANHRKSIHLTTISHEIRTPLNGALGAVELLQNT--- 426 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL P + A + + +L I+N+LLD S+IESG++ L E +L + +A+ + Sbjct: 427 PLA-PEQYQLAETARQCSHSLLAIINNLLDFSRIESGQLTLSQEKTALLPLLDQAMLTIH 485 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K I + T ++++P I D + +KQI +N+L NA+ FT G I T + Sbjct: 486 SQVLNKPIALSTYVSSDVPLEIELDSQRIKQILVNLLGNAVKFTRQGH--ISLTVERKGQ 543 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++ V DTG G+ + EK +PF Q + +Q GTGLGL +A + G ++ Sbjct: 544 QLCFTVEDTGCGIDSQHQEKIFRPFIQTYDHRQ----GTGLGLTIADNLAKMMGGNITLY 599 Query: 796 STPAKGTLIEIIFPLYDTS 814 S P G+ + P T+ Sbjct: 600 SKPNCGSRFSLTLPFRGTT 618 >gi|271501843|ref|YP_003334869.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech586] gi|270345398|gb|ACZ78163.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech586] Length = 922 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 129/237 (54%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + +Y Sbjct: 275 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTQL----TTTQKDYLQT 330 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L+I+ND+LD SK+E+GK+ L P SL + E I L+ A+EK + + + Sbjct: 331 IERSANNLLNIINDVLDFSKLEAGKLVLENIPFSLHNTLDEVIMLLAHTAHEKGLELTLN 390 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTG 745 +++P + + D ++QI N+L NAI FT G I I N +V+L +++DTG Sbjct: 391 IQHDVPEQFVGDPLRLQQIITNLLGNAIKFTEQGNIDIRIEKRKQENLQVLLEIQIKDTG 450 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S + GTGLGL + + +V G S +GT Sbjct: 451 IGIAEAQQTQLFQAFRQADTSISRQHGGTGLGLVITQRLVREMGGDISFHSKLNQGT 507 >gi|129306911|gb|ABO30418.1| GacS [Pseudomonas sp. Q2-87] Length = 204 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 125/206 (60%), Gaps = 8/206 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y I++S + +L I+N++ Sbjct: 3 KSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQLDYLGTIEKSADSLLGIINEI 58 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRTSFANNIPRILADLRS 703 LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ + + ++ D Sbjct: 59 LDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLSLVGDPLR 118 Query: 704 VKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 +KQI N++SNAI FT G + ++ H + ++ + ++DTG+G+++ ++ + F Sbjct: 119 LKQILTNLVSNAIKFTREGTIVARAMLEDEHEDSVQLRISIQDTGIGLSSQDVRALFQAF 178 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVD 786 Q NS + GTGLGL ++K +V+ Sbjct: 179 SQADNSLSRQPGGTGLGLVISKRLVE 204 >gi|86146354|ref|ZP_01064678.1| sensor histidine kinase/response regulator [Vibrio sp. MED222] gi|85835833|gb|EAQ53967.1| sensor histidine kinase/response regulator [Vibrio sp. MED222] Length = 937 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 134/252 (53%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K L N + +Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTH----LSNSQ-TDYLQ 330 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RS N +L I+ND+LD SK+E+GK+ L P ++ E ++L A+EK + + Sbjct: 331 TIERSANNLLSIINDILDFSKLEAGKLALENIPFEFQASLEEVVNLQATNAHEKGLELTL 390 Query: 689 SFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDT 744 + P ++ D ++QI N++ N+I FT G I + +E+ I VRDT Sbjct: 391 KIDPKVPPGVVGDPLRIQQILTNLVGNSIKFTERGNIDISVELRSQSEDSIELQFMVRDT 450 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTF 510 Query: 805 EIIFPLYDTSHP 816 L T P Sbjct: 511 WFTLRLSTTDMP 522 >gi|125974108|ref|YP_001038018.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] gi|125714333|gb|ABN52825.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] Length = 556 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 93/366 (25%), Positives = 179/366 (48%), Gaps = 32/366 (8%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 +K++ + + +I E +GI ++N +G+IL N++ + +F +DI+ K Sbjct: 217 KKLKEQKEEFNAITENIREGIIVLNNKGLILFINKSAADIFNVSTQDIINK--------- 267 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 H LT S+ L++ +E +G E + ++ + ++L + + Sbjct: 268 ------HILTLDRSITLQKAIET-AMGGHLFEDIFAIG--------ENSFNLLASPVKDE 312 Query: 565 KQEKNKLSHAKKIAEKESSHK--SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 K + + EK+S+ K +F A VSHE++TPLT+I+G++E++K+ P Sbjct: 313 VVVKGVILFILDVTEKQSAEKMRREFAANVSHELKTPLTSILGYAELMKSGMVKP---ED 369 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 E+++ I ++D++ D++ IS+++ + L FE + L E E + + A +K Sbjct: 370 ISEFSDRIYNEARHLIDLIEDVIRISRLDEKNVQLPFEEIDLLELAKETVGRLSSLAQQK 429 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 RI + N I I + ++++ N+ NAI + G++ ++ T +++V+L V Sbjct: 430 RIKLSVGGDNAI--IFGVRQILEEMIYNLCDNAIKYNYENGKVDVNV-KTFSDQVVLTVA 486 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D G G+ + + F +I S GTGLGL + K + + K + S P KGT Sbjct: 487 DNGFGIPREHQSRVFERFYRIDKSHSRETGGTGLGLSIVKHSAEFHNAKIRLMSKPGKGT 546 Query: 803 LIEIIF 808 I +IF Sbjct: 547 TITVIF 552 >gi|326202265|ref|ZP_08192134.1| multi-sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] gi|325987383|gb|EGD48210.1| multi-sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] Length = 607 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 94/354 (26%), Positives = 172/354 (48%), Gaps = 24/354 (6%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +IL +DG+ + +G+ + N A +KL G D++ PF F + Sbjct: 275 TILNYMADGVIAFDLKGMAIHANPAATKLLG---SDVVNSPFKEFAVK------------ 319 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 + LD+R +E I +E + I+ + + Y D ++ + + H Sbjct: 320 -VGLDVR--IEDIVY--FEESPVRESDTILNDM-YVKVYFAVFTDTNKKPEGIIVVLHDD 373 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 +K S + +F+A VSHE+RTP+T+I ++E + + + ID + Sbjct: 374 TEQQKLDSMRREFVANVSHELRTPITSIKSYTETLLEGAMEDQETSK--RFLCVIDSEAD 431 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 + +V DLL +S++++ +MN E VSLD V + +Q+ A K + + +IP Sbjct: 432 RMTRLVKDLLQLSRLDNQQMNWKMECVSLDTIVKTIVERLQIEAQRKHQKLDSYVIGDIP 491 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 I AD ++Q+ +N++SN+I +T G+I + N ++ ++V DTG+G+ + L + Sbjct: 492 AISADKDRMEQVIVNLISNSIKYTSEYGEITVYVGIIYN-DIYVKVTDTGIGIPSESLPR 550 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F ++ ++ GTGLGL +AK +V A+ G I S KGT + + P Sbjct: 551 VFERFYRVDKARSRDMGGTGLGLSIAKEIVQAHGGTINISSEIGKGTEVTVKLP 604 >gi|212218529|ref|YP_002305316.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154] gi|212012791|gb|ACJ20171.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154] Length = 683 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/241 (33%), Positives = 137/241 (56%), Gaps = 8/241 (3%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK+ AE+ + KSDFLA +SHE+RTPL AI+G S+++K + + I ++ Sbjct: 295 AKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTHNLSDEQQGQ----IDVISQA 350 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +L ++NDLLD +K+E+GK++ E + L E V + + L A++K I ++ + N Sbjct: 351 GQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLAHKKGIQLKFDYPEN 410 Query: 694 IP-RILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEEVIL--RVRDTGVGMT 749 IP +++ D + ++Q+ +N+LSNA+ FT G Q+ + ++++ L V+DTG+GM Sbjct: 411 IPSKVMGDAKRIRQVLVNLLSNALKFTEKGYVQLTANCLKKDHKKMTLCFTVKDTGIGME 470 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L F QI + Q + +G GLGL + K +++ G + S P G+ I P Sbjct: 471 KTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVTSEPGVGSEFTCIIP 530 Query: 810 L 810 Sbjct: 531 F 531 >gi|120612176|ref|YP_971854.1| integral membrane sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] gi|120590640|gb|ABM34080.1| integral membrane sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] Length = 1197 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 123/231 (53%), Gaps = 6/231 (2%) Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 +A++ + KS +++ +SHE+RTPL +I+G+++++ P P + I R G Sbjct: 735 LADQANQAKSRYISAISHELRTPLNSILGYAQLMGEDASVP---PHRRQAVGVIRRGGEH 791 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 +L ++ LDI++IESGK+ L P+ + V E + + + A K + R +P+ Sbjct: 792 LLTLIEGTLDIARIESGKLTLQVRPMRFADCVHEMVEMFEPQARAKGLAFRFDPQGMLPQ 851 Query: 697 IL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 ++ D + V+QI +N++ NAI FT + G + + H + E ++ + D+G G+T E Sbjct: 852 VVRGDDKRVRQILINLIGNAIKFT-AAGHVRLGVRH-ARELALIEIEDSGPGLTEAERAS 909 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 +PF + S G GLGL +AK + + G+ + STP G L + Sbjct: 910 IFEPFERGAASSHGAAPGAGLGLTIAKMLTELMGGEMTVTSTPGAGALFRV 960 >gi|320162201|ref|YP_004175426.1| putative two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319996055|dbj|BAJ64826.1| putative two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 641 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 100/372 (26%), Positives = 182/372 (48%), Gaps = 39/372 (10%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 +T +RK+E ++L DG+ +++RE +L N+ V + F P + + F Sbjct: 306 ETITERRKLE-------TVLTNVQDGVVLMDREKRLLLVNQTVRQAFSLPENHLTGRSFR 358 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558 V +H L L ++ + ++ + ++R+ +P +LT Sbjct: 359 --------DVFSHPALLELLEGLENGTDRTEV-QVEDGRYFTVRV--SPIP-EVGIALTF 406 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ K K KSDF+ VSH++R+PLTAI+G+ E+I +R G + Sbjct: 407 SDITSLK--------------KLDQIKSDFVHTVSHDLRSPLTAILGYVELI--ERVGTV 450 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N ++ I S + + +V+DLLD+ +IE+G + EPV+LD + ++ + Sbjct: 451 -NDLQRDFIRRIQVSVHNITSLVDDLLDLGRIEAG-FDTRKEPVALDAIIRYSVEGFKKA 508 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 EK ++ P +LA+ ++Q+ N+L NAI +TP GG+I +S N +++ Sbjct: 509 LGEKGHTLQLDLPAQAPSLLANPVQMRQMVDNLLDNAIKYTPQGGKIQVSLRVEGN-QLL 567 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +V D G+G+ +L F + N+ GTGLGL + K++V+A+ G+ ++ S Sbjct: 568 FQVSDNGIGIPPIDLPYVFDKFYRASNAAP-DVSGTGLGLAIVKSIVEAHEGRIWVDSAV 626 Query: 799 AKGTLIEIIFPL 810 G+ ++ PL Sbjct: 627 GTGSTFTVVLPL 638 >gi|222053125|ref|YP_002535487.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. FRC-32] gi|221562414|gb|ACM18386.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. FRC-32] Length = 751 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 136/239 (56%), Gaps = 5/239 (2%) Query: 578 AEKE-SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 AE+E K++F++ VSHE++TPLT++ G +++ N+ G + + R+ Sbjct: 515 AEEEIDRMKTEFISTVSHELKTPLTSMKGSLQLLLNR--GKWLTETERQLLSVCLRNTQR 572 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 ++ +++++LDIS++ESG M+ F+P+S+ E V AI ++ +A+ + I I S +++P Sbjct: 573 LIRMISEILDISRMESGGMDFTFKPLSMGELVVYAIEEIKTFAHNRSISIVNSLGDHLPL 632 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 + D + Q+ N+LSNA+ F+P G+I++ +++ V D + + EK Sbjct: 633 VYGDHDRLIQVLTNLLSNAVKFSPE-GKIVMVLAEREGNYLVVSVTDRARAIQWSDREKL 691 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 K F Q+ + Q ++G GTGLGL + K +++ + GK Y + G + P+Y+ +H Sbjct: 692 FKKFQQLESDQPMQG-GTGLGLAICKEIIEKHHGKIYYNAGKEGGNVFSFTVPIYEENH 749 >gi|294809911|ref|ZP_06768586.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294442902|gb|EFG11694.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 950 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 130/248 (52%), Gaps = 7/248 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG-FSEVIKNQRFGPLGNPRYIEYAN 628 K+ + I +K S K F +SHE+RTPLT I G E+ + ++ P G ++Y + Sbjct: 404 KMKNDIYIEQKVSEMKIKFFTNISHELRTPLTLIKGPIQELREREKLSPKG----LQYVD 459 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 ++++ N +L +VN +LD KI++GKM LH + +E ++ ++ + E I Sbjct: 460 LMEKNTNQMLQLVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTF 519 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVG 747 + + AD + + NI+SNA FT SGG I I+T T + + +RV D GVG Sbjct: 520 QLPDEPIMVWADKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVG 579 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +L + + F Q N++ +GTG+GL L+K +V+ + G+ S +G + I+ Sbjct: 580 IPQNKLTEIFERFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVF-IV 638 Query: 808 FPLYDTSH 815 L D H Sbjct: 639 ELLMDKEH 646 >gi|166031682|ref|ZP_02234511.1| hypothetical protein DORFOR_01382 [Dorea formicigenerans ATCC 27755] gi|166028659|gb|EDR47416.1| hypothetical protein DORFOR_01382 [Dorea formicigenerans ATCC 27755] Length = 946 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 87/242 (35%), Positives = 127/242 (52%), Gaps = 17/242 (7%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANY 629 L +A IA + + + FL +SH+IRTPL AIIGF+++ GN I+ Y + Sbjct: 556 LENALTIARQANRARGVFLRNMSHDIRTPLNAIIGFAKLAMKSE----GNFEQIQDYLSK 611 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--RILIR 687 I SGN +L IVND+L++S+IESG+ L P ++ V E ++Q A EK ++ Sbjct: 612 ISVSGNHLLAIVNDVLEVSRIESGQTKLEELPCNIKNIVDEVEVIIQGQAQEKTQTFIVD 671 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-------SNEEVILR 740 TS + I D VK++ +N+L NA+ FTP GG+I + +N EV Sbjct: 672 TSKVKDY-YIYCDRLRVKEVLVNLLGNAVKFTPKGGKIELRIIQNEPAPEGYANYEV--H 728 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+D G GM+ + K PF + S +GTGLGL +AK VD G + S + Sbjct: 729 VKDNGCGMSPEFMGKMFLPFERERTSTVSGIQGTGLGLSIAKQFVDLMGGTIEVTSKEKE 788 Query: 801 GT 802 GT Sbjct: 789 GT 790 >gi|186682661|ref|YP_001865857.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465113|gb|ACC80914.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1242 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 121/226 (53%), Gaps = 4/226 (1%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + E+ + A+ AE + K +FL +SHEIRTPL ++G+ ++++ + R + Sbjct: 851 QAERIREQAARVEAEAANRMKDEFLQVLSHEIRTPLNGMLGWVKMLRQGKLDSSATTRAL 910 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E I+R+ N +V+DLLD+S I G++ L PVSL ++EAI ++ A K I Sbjct: 911 ET---IERNANAQAKLVDDLLDVSCIIRGQLRLEKRPVSLISVITEAIETLKPQAEAKDI 967 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 I + + D ++Q+A N+LSNAI FTPSGGQ+ +S + +L+V+DT Sbjct: 968 TINCMLDRYVSSVSGDASRLQQVAWNLLSNAIKFTPSGGQVEVS-LQAVGTDALLQVKDT 1026 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 G G+ L + F Q S G GLGL + + +V+ + G Sbjct: 1027 GNGIKADFLPYIFERFRQADASTTRTYGGLGLGLAIVRHLVEMHGG 1072 Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 77/267 (28%), Positives = 132/267 (49%), Gaps = 9/267 (3%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG-FSEVIKNQ 613 S+++ + +++E+ K A+ +AE + + K+ F VSHE RTPLT I+G +V+ NQ Sbjct: 407 SVSLRNAQAYEEERKK---AQALAELDRT-KTAFFNNVSHEFRTPLTLILGPLEDVLNNQ 462 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 R E + R+ +L +VN LLD S+IE+ ++ +EP+ L +E S Sbjct: 463 NARLTSEER--EQLQLVHRNSLRLLKLVNTLLDFSRIEANRIQAVYEPIDLAVFTTELAS 520 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + + + + + D ++I LN+LSNA FT G QI +S + Sbjct: 521 VFRSTIERAGLRLIVDCPPLPEAVYVDREMWEKIVLNLLSNAFKFTFIG-QISVSLRWYT 579 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E V L V+DTG+G+ EL + F ++ Q EG+G+GL L + ++ + G Sbjct: 580 -EYVELEVQDTGIGIPAEELPHLFERFYRVQGLQGRTYEGSGIGLSLVQDLIRLHGGSIR 638 Query: 794 IFSTPAKGTLIEIIFPLYDTSHPHDCI 820 + S +G+ ++ P P + I Sbjct: 639 VSSKVNQGSSFIVLLPTGTAHLPTERI 665 >gi|165919133|ref|ZP_02219219.1| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain/response regulator receiver domain protein [Coxiella burnetii RSA 334] gi|165917145|gb|EDR35749.1| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain/response regulator receiver domain protein [Coxiella burnetii RSA 334] Length = 669 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 81/255 (31%), Positives = 143/255 (56%), Gaps = 8/255 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++ + +L AK+ AE+ + KSDFLA +SHE+RTPL AI+G S+++K Sbjct: 267 DVTNDALREKELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTHNLSDEQ 326 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + I ++G +L ++NDLLD +K+E+GK++ E + L E V + + L A Sbjct: 327 QGQ----IDVISQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLA 382 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEEV 737 ++K + ++ + NIP +++ D + ++Q+ +N+LSNA+ FT G Q+ + ++++ Sbjct: 383 HKKGMQLKFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEKGYVQLTANCLKKDHKKM 442 Query: 738 IL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 L V+DTG+GM +L F QI + Q + +G GLGL + K +++ G + Sbjct: 443 TLCFTVKDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVT 502 Query: 796 STPAKGTLIEIIFPL 810 S P G+ I P Sbjct: 503 SEPGVGSEFTCIIPF 517 >gi|15963791|ref|NP_384144.1| putative sensor histidine kinase protein [Sinorhizobium meliloti 1021] gi|15072966|emb|CAC41425.1| Putative sensor histidine kinase [Sinorhizobium meliloti 1021] Length = 826 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 81/254 (31%), Positives = 134/254 (52%), Gaps = 7/254 (2%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT +I++ + + L+ + K + K+DF+ VS+E+R+PLT IIGF++++K F Sbjct: 569 LTFVNITDSVRVERALTEKNEALRKADALKNDFVHHVSYELRSPLTNIIGFADLLKTPVF 628 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L N R EY ++I S +L+L IVND+LD++ +++G + L V+L + + + + Sbjct: 629 GEL-NERQAEYVDHIATSSSLLLTIVNDILDLATVDAGIVELELSEVNLIDLIDDVTQQM 687 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 E + +RT +N+ RI AD + +KQI + +L+NA +F P G I + + Sbjct: 688 GDRLVESGVSLRTDAPDNLGRITADQQRLKQIFIKLLTNAANFAPDGSTIELKCWREGS- 746 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V DTG G+ L F S RG G GLGL + ++ V + G I Sbjct: 747 DFAFSVTDTGPGIPQDVLNTVFNRF----ESYGQRG-GAGLGLSIVESFVSLHHGNVSIR 801 Query: 796 STPAKGTLIEIIFP 809 S +GT + P Sbjct: 802 SKEGEGTAVTCRIP 815 >gi|17231988|ref|NP_488536.1| two-component system sensory histidine kinase [Nostoc sp. PCC 7120] gi|1546076|gb|AAC32398.1| HepK [Nostoc sp. PCC 7120] gi|17133632|dbj|BAB76195.1| two-component system sensory histidine kinase [Nostoc sp. PCC 7120] Length = 575 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 134/263 (50%), Gaps = 11/263 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I + +L AK++AE S KS FLA VSHE+RTPL A+IG S+++K+ + Sbjct: 315 IERVSERTKELEQAKELAEAASKAKSIFLANVSHELRTPLNAVIGLSQLLKDDAADLNLS 374 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + I+ +G +L+++ND+LD+SKIE+GKM L+ E + ++ + V+ Sbjct: 375 GEFTSDLETINSAGRHLLELINDILDLSKIEAGKMTLYPEIFDVVTLINNVVVTVKPTIE 434 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-- 738 + L+ ++ + AD ++Q+ LN+LSNA FT +G I T E+ + Sbjct: 435 KNNNLLEIYCDEHLGTMYADQTRMRQVLLNLLSNAAKFTTNGR--IKLTVRREKEDFLPE 492 Query: 739 -------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 V DTG+GM+ + ++ +PF Q S + GTGLGL +++ G+ Sbjct: 493 MPFGAISFTVSDTGIGMSPSQQQQLFQPFTQGDTSTTKKYGGTGLGLAISRHFCQMMGGE 552 Query: 792 FYIFSTPAKGTLIEIIFPLYDTS 814 + S G+ + PL + S Sbjct: 553 IIVKSQLGLGSTFTVYLPLQEQS 575 >gi|329132016|gb|AEB77969.1| GacS [Pseudomonas sp. C10-186] gi|329132018|gb|AEB77970.1| GacS [Pseudomonas sp. C10-190] gi|329132022|gb|AEB77972.1| GacS [Pseudomonas sp. K93.52] Length = 203 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 124/205 (60%), Gaps = 8/205 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y I++S + +L I+N++ Sbjct: 3 KSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQLDYLGTIEKSADSLLGIINEI 58 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRTSFANNIPRILADLRS 703 LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ + + ++ D Sbjct: 59 LDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLSLVGDPLR 118 Query: 704 VKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 +KQI N++SNAI FT G + ++ H + ++ + ++DTG+G+++ ++ + F Sbjct: 119 LKQILTNLVSNAIKFTREGTIVARAMLEDEHEDSVQLRISIQDTGIGLSSQDVRALFQAF 178 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMV 785 Q NS + GTGLGL ++K +V Sbjct: 179 SQADNSLSRQPGGTGLGLVISKRLV 203 >gi|322419000|ref|YP_004198223.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320125387|gb|ADW12947.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 586 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 101/387 (26%), Positives = 180/387 (46%), Gaps = 50/387 (12%) Query: 437 DVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 D+ RI ++ ++ E +L +ILE +G+ + + ++ N A +FG Sbjct: 230 DMAARIEQQLDRISSERNRLDAILEGMGEGVMVTDEAAVVTLVNPAFCSMFG-------- 281 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSL-DLRQTLEKITLGSTKEEKLLSLR----IIIKKLP 549 T V L EI DL + ++ ++ + L+L ++ +P Sbjct: 282 ---------ATADVQGKQLLEITRHPDLYASCREVLAKRQEQRRELNLSGGKATLVHWVP 332 Query: 550 FSSCYSL-----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 L HDIS K K + DF+A VSHE+RTP+T I Sbjct: 333 LLEGVKLRGVVAVFHDISAMK--------------KADQIRRDFVANVSHELRTPVTVIK 378 Query: 605 GFSEVIKNQRFGPLGN--PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 G++E + + G L + R + I + + D+V DLL +S++ESG++ + + V Sbjct: 379 GYAETLLS---GDLADDPGRRDRFLGIIQNHADRLSDLVRDLLALSELESGELAMQPQKV 435 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 +++AV +A+ L+ A EK I++ + +AD + Q+ +N+L NAI ++ G Sbjct: 436 LIEDAVRQALLLLSPRAEEKGIVMELGSCAPVS-AMADRGRLDQVLINLLENAIKYSGQG 494 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 G+I + E V + VRD G+G+ +L + + F ++ ++ GTGLGL + K Sbjct: 495 GRIQVEAAE-EGEMVRVSVRDNGIGIPEKDLPRLFERFYRVDEARSRERGGTGLGLSIVK 553 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 +V A+ G ++ ST KG++ P Sbjct: 554 HIVMAHGGSVFVESTVGKGSVFSFTLP 580 >gi|220909132|ref|YP_002484443.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219865743|gb|ACL46082.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 1255 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 106/377 (28%), Positives = 189/377 (50%), Gaps = 24/377 (6%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPFTVFLEQ 503 R E QL +I DGI +I R GI + N A KL G E ++ P F+ Q Sbjct: 886 RASEERYRQLVTI---CPDGI-LIQRGGIFMFANPAALKLLGAVTPEQVIGHPVLEFIHQ 941 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 + ++ L + + +E+ L G+ ++ ++ ++ + P + + D Sbjct: 942 DDHELVLERLHRLAEGEAVPPIEEKWLCLNGTIAHTEVAAVPLLYQNQP---AVQVVIRD 998 Query: 561 ISEWKQEKNK-------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 I+E KQ + + A++ AE+ + K +F+A VSHE+R+PL AI+G++++++ + Sbjct: 999 ITERKQLEQQRELLLVAAEVAREEAEQANRAKDEFIAVVSHELRSPLNAILGWAKLLQTR 1058 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 F P R +E I+R+ + ++ DLLDIS++ G + L+F PV+L V E + Sbjct: 1059 SFEPAMLRRGLE---TIERNVETQVQLIEDLLDISRMVRGTLRLNFMPVNLVALVEETLL 1115 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +Q K++ + + R+ DL ++QI N+L+NAI FTP+GGQ+ + + Sbjct: 1116 NLQPSITAKQLDLGYYPGSEEIRVAGDLHRLQQIFANLLTNAIKFTPAGGQVEVRLVN-C 1174 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +V + V DTG G+ L F Q ++++ + EG GLGL + + +V+ + G Sbjct: 1175 GAQVQIMVIDTGKGIAADFLPYIFDRFRQGNDAREPQ-EGLGLGLAIVRHLVELHKGTIQ 1233 Query: 794 IFST-PAKGTLIEIIFP 809 S P +G + P Sbjct: 1234 AASAGPGQGATFTVTLP 1250 >gi|17228473|ref|NP_485021.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130324|dbj|BAB72935.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1186 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/219 (32%), Positives = 120/219 (54%), Gaps = 4/219 (1%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE + K +FLA +SHE+R+PL I+G+S ++++++ P + +E I+R+ L Sbjct: 809 AEAANRIKDEFLAVLSHELRSPLNPILGWSRILRSKQLSPTKVEQALET---IERNAKLQ 865 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 ++ DLLD+S+I GKM L+ V+L ++ A+ VQL A K I I+T+ + Sbjct: 866 AQLIEDLLDVSRILQGKMTLNVASVNLAATIAAALETVQLAAEAKNIHIQTTLKPISATV 925 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 + D ++Q+ N+LSNA+ FTPSGGQI + N ++V+D+G G+ L Sbjct: 926 VGDQNRLQQVVWNLLSNAVKFTPSGGQIEVQLEQV-NLYAQIQVKDSGKGIAREFLPYVF 984 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + F Q + + G GLGL + + + + G + S Sbjct: 985 EYFRQEDGATTRQFGGLGLGLAIVRHFTELHGGTVQVSS 1023 >gi|295084146|emb|CBK65669.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Response regulator receiver domain./Two component regulator propeller./Bacterial regulatory helix-turn-helix proteins, AraC family./Y_Y_Y domain. [Bacteroides xylanisolvens XB1A] Length = 1465 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 130/248 (52%), Gaps = 7/248 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG-FSEVIKNQRFGPLGNPRYIEYAN 628 K+ + I +K S K F +SHE+RTPLT I G E+ + ++ P G ++Y + Sbjct: 918 KMKNDIYIEQKVSEMKIKFFTNISHELRTPLTLIKGPIQELREREKLSPKG----LQYVD 973 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 ++++ N +L +VN +LD KI++GKM LH + +E ++ ++ + E I Sbjct: 974 LMEKNTNQMLQLVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTF 1033 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVG 747 + + AD + + NI+SNA FT SGG I I+T T + + +RV D GVG Sbjct: 1034 QLPDEPIMVWADKEKMSIVIRNIISNAFKFTHSGGSIYITTGLTDDGKRCYVRVEDNGVG 1093 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +L + + F Q N++ +GTG+GL L+K +V+ + G+ S +G + I+ Sbjct: 1094 IPQNKLTEIFERFSQGENAKNSYYQGTGIGLALSKEIVNLHHGQIRAESPEGQGAVF-IV 1152 Query: 808 FPLYDTSH 815 L D H Sbjct: 1153 ELLMDKEH 1160 >gi|150005253|ref|YP_001299997.1| putative two-component histidine sensor kinase [Bacteroides vulgatus ATCC 8482] gi|149933677|gb|ABR40375.1| putative two-component histidine sensor kinase [Bacteroides vulgatus ATCC 8482] Length = 667 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/239 (33%), Positives = 132/239 (55%), Gaps = 12/239 (5%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK+ AE+ + K+ FLA +SHEIRTPL AI+GFS V+ + P +Y + I ++ Sbjct: 435 AKEKAEESNRLKTAFLANMSHEIRTPLNAIVGFSSVLVSDDSSPAEKE---QYCDIIQKN 491 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 +L+L ++ND+LDIS++ESG++ +E + E A+S V+ Y + L F Sbjct: 492 SDLLLHLINDILDISRMESGRIKFVWEECDVVELCQTALSTVE-YGRKTSALFL--FETP 548 Query: 694 IPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 +P ++ D + +KQ+ +N+LSNA FTPSG + ++++ L V DTG G+ Sbjct: 549 VPSLVVKTDAQRLKQVLINLLSNAAKFTPSGSIKLTVAIDKQHQQLELSVSDTGCGIPPD 608 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + EK + F ++ Q GTGLGL +++ +++ GK ++ +G PL Sbjct: 609 KSEKVFERFEKLNEYSQ----GTGLGLAISRLIIENLGGKIWVDKDYTEGARFVFTHPL 663 >gi|269215795|ref|ZP_06159649.1| putative sensor histidine kinase [Slackia exigua ATCC 700122] gi|269130745|gb|EEZ61821.1| putative sensor histidine kinase [Slackia exigua ATCC 700122] Length = 650 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/247 (30%), Positives = 135/247 (54%), Gaps = 9/247 (3%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + ++L HA +ES++K++F A VSHE+RTPLT+++ ++ +KN G R ++ Sbjct: 394 QSDELKHAYDKLSEESAYKNEFFAIVSHELRTPLTSVMAYARRLKNSE-GIC--ERDLDS 450 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I+ S N++L++VN++L +SK E+GK L P+ E + ++ A K I + Sbjct: 451 VIQIETSANVLLNLVNNILTLSKAEAGKNTLELGPIDFVELLKFVEKTLRPLAANKNIEL 510 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTG 745 + N+P +AD ++++ N+ NAI +T GG + + NE E+++ V D G Sbjct: 511 VSHADANVPIAMADWEKMRRVIDNLADNAIKYTHEGGSVDVHAWLDENENEIVIDVVDNG 570 Query: 746 VGMTNYELEKAMKPFGQ---IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + + Q +P S IR GTGLGL + K +V + G + STP +G+ Sbjct: 571 IGIDPKDQDSIFEAYEQARRMPVSHHIR--GTGLGLAVVKELVRLHEGSVSVQSTPKQGS 628 Query: 803 LIEIIFP 809 + P Sbjct: 629 TFTVRIP 635 >gi|167590631|ref|ZP_02383019.1| multi-sensor hybrid histidine kinase [Burkholderia ubonensis Bu] Length = 985 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/258 (32%), Positives = 128/258 (49%), Gaps = 8/258 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ D++ K+ + KL A++ AE + KS FLA +SHEIRTPL AIIG E++ Sbjct: 459 TLLDVTARKRTELKLREAREAAEDANRAKSTFLATMSHEIRTPLNAIIGNLELMARASLP 518 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P R I S + +L ++ND+LD+SK ES +M L P L + + + ++ + Sbjct: 519 PSERRRL----KTIASSSDALLRVINDVLDLSKAESNQMALECIPFDLRDLLRDVAAIFR 574 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHT 732 A+ K + + A ++ L D ++Q+ N++ NAI FT GG I ++T Sbjct: 575 PVADAKHLTLDCRMAADLADGYLGDPTRLRQLVSNLVGNAIKFTKRGGVTIDARVATDAA 634 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 V + VRDTG+G+ L + Q S R GTGLGLPL + G+ Sbjct: 635 GARRVAIAVRDTGIGIPEDALPNLFDVYMQADPSIYRRFGGTGLGLPLCGRIARLMHGEL 694 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S +GT PL Sbjct: 695 TVESRVDEGTTFVAALPL 712 >gi|226289104|gb|EEH44616.1| two-component sensor protein histidine protein kinase [Paracoccidioides brasiliensis Pb18] Length = 2333 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 85/278 (30%), Positives = 141/278 (50%), Gaps = 31/278 (11%) Query: 567 EKNKLSHAK------KIAEKESSH-----------KSDFLARVSHEIRTPLTAIIGFSEV 609 +K L+HA+ K+AE E+ H KS FLA VSH++RTP+ +IG +E+ Sbjct: 1787 QKRALAHAREAERKSKVAEAEAKHNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLTEL 1846 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 +K N Y + I + +L ++ND+LD SK+E+GKM + P++L + + Sbjct: 1847 LKKTSLDREQNG----YVDSIRVCADTLLTLINDILDFSKLEAGKMKVTAIPLNLRDTIL 1902 Query: 670 EAISLVQLYANEKRILIRTSFANNI-PRIL--ADLRSVKQIALNILSNAIHFTPSGGQII 726 EA+ + Y + R L + + P +L D + QI +N+LSN+ FTP G + Sbjct: 1903 EAVRAL-CYTHRHRGLQTIEDLDELDPNLLVMGDPVRLHQIFMNLLSNSYKFTPQGSVTV 1961 Query: 727 ISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + + + + +V DTG+G+ +L + +PF Q +S G+GLGL + KA Sbjct: 1962 NAKSSVEEDGRIRITCKVVDTGIGIPGEQLVRLFRPFSQADSSSARSFGGSGLGLSICKA 2021 Query: 784 MV-DANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 ++ D GK ++ S GT + F L + P D + Sbjct: 2022 IIEDVLGGKIWLQSEEGVGT--TVTFSLVFSKAPKDAV 2057 >gi|160875359|ref|YP_001554675.1| integral membrane sensor hybrid histidine kinase [Shewanella baltica OS195] gi|160860881|gb|ABX49415.1| integral membrane sensor hybrid histidine kinase [Shewanella baltica OS195] gi|315267558|gb|ADT94411.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678] Length = 924 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 133/249 (53%), Gaps = 11/249 (4%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++L+ AK+ AEK + K++ L +SHEIRTPL I G E+++N + P+ ++ + Sbjct: 385 HELALAKQEAEKANERKTEHLTNISHEIRTPLNGITGALELLRNTQL----TPKQMDLRD 440 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 N +L I+N+LLD S+IE+ ++ L+ + + + +A+ +Q K I ++ Sbjct: 441 TAYNCANSLLAIINNLLDFSRIEADQIELNLQSYPILKLADDAMITIQSRVVNKPITLKC 500 Query: 689 SF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 AN + L D V+QI +N+L N+ FT GQI++ + + V DTGVG Sbjct: 501 LVNANVAEKALLDPLRVRQILVNLLGNSAKFT-EAGQILLR-IEVVKQHLYFSVEDTGVG 558 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + ++ +PF Q + + GTGLGLP++ + GK +FST +G+ + Sbjct: 559 VAIQDQQRIFEPFAQTCHHK----SGTGLGLPISAKLASKMKGKLTMFSTLGEGSTFILD 614 Query: 808 FPLYDTSHP 816 PL D + P Sbjct: 615 LPLIDPTAP 623 >gi|328947720|ref|YP_004365057.1| histidine kinase [Treponema succinifaciens DSM 2489] gi|328448044|gb|AEB13760.1| histidine kinase [Treponema succinifaciens DSM 2489] Length = 705 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/253 (31%), Positives = 134/253 (52%), Gaps = 12/253 (4%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E KQ K L A +AE S KS FL+ +SH+IRTP+ AIIG++ + + +GNP Sbjct: 307 EMKQRK-ALQEALSMAELASHAKSRFLSNMSHDIRTPMNAIIGYTSLAEKH----IGNPE 361 Query: 623 YIEY-ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 I+ I + + +L ++ND+LD+S+IESGK+ + F ++++ ++E S++Q Sbjct: 362 LIKSDLARIKTNSSYLLCLINDVLDMSRIESGKIKIKFTSNTIEDILAEVDSVIQPQLQS 421 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-----E 735 K++ N+ R + D +KQI +NIL N++ +T G I + T + Sbjct: 422 KKLNYSVLRHGNLSRKVFCDKLRLKQILINILGNSVKYTGENGSIKFTAAETPSVSDGYS 481 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 R++D G+GM+ +K PF + N + +GTGLGL ++K +V+ G ++ Sbjct: 482 SYQFRIKDNGIGMSEEFQKKVFNPFERDENIENFHVQGTGLGLSISKNLVEKMDGSIFLK 541 Query: 796 STPAKGTLIEIIF 808 S T I F Sbjct: 542 SKKDVETEFLICF 554 >gi|317475553|ref|ZP_07934815.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] gi|316908257|gb|EFV29949.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] Length = 912 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/263 (31%), Positives = 138/263 (52%), Gaps = 12/263 (4%) Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 P S SL + I++ K+ + +L +AK AE+ KS FLA +SHEIRTPL AI+GFS Sbjct: 518 PISLIGSLLI--ITDRKRNEQELINAKNRAEESDRLKSAFLANMSHEIRTPLNAIVGFSS 575 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++ + EY N I+ + L+L +++D+LDI+KIE+G ++ ++ + L+ + Sbjct: 576 ILATAEEEEEKS----EYINIIENNNQLLLQLISDVLDIAKIEAGSLDFNYSSLDLNVLM 631 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 +E S + + + N+ ++ + + QI +N+L+NAI FT G I Sbjct: 632 NELESTALMRITSPDVCLEMIPDNDNCWVITERNRLSQIIINLLNNAIKFTQKGK--ITF 689 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 E++ V DTG G+ + +K + F ++ N Q GTGLGL + K++VDA Sbjct: 690 GYKLQKEKIYFYVTDTGCGIPAEKQDKIFERFIKLNNFAQ----GTGLGLSICKSIVDAM 745 Query: 789 MGKFYIFSTPAKGTLIEIIFPLY 811 G+ + S G+ P + Sbjct: 746 GGEIGVDSKVGNGSTFWFTLPYH 768 >gi|312211920|emb|CBX92004.1| hypothetical protein [Leptosphaeria maculans] Length = 934 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 88/264 (33%), Positives = 139/264 (52%), Gaps = 20/264 (7%) Query: 560 DISEWKQEKNKLSHAKKIAEKE------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 DI+E K L+ K++ KE S+ KS FLA +SHEIRTP++ IIG SE + + Sbjct: 486 DITEEKARSILLTENKQLIAKEKAALDASNLKSRFLANMSHEIRTPISGIIGLSEHLSDC 545 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 N +E++N I+ S +L +VND+LD SK+ESG M++ P S + +S+ + Sbjct: 546 GL----NEEQLEFSNSIEESAKFLLTLVNDVLDFSKMESGHMDVESIPFSPLKIISDTLI 601 Query: 674 LVQLYANEKRILIRTSFANNI---PRILADLRSVKQIALNILSNAIHFTPSGGQIIIS-- 728 ++L A E+ + + +F + L D ++QI N++ N++ FT GQI +S Sbjct: 602 PLRLQAKERGLAL--TFDCKLEPGAMFLGDPWRLRQILTNLIGNSLKFTQQ-GQIDLSVR 658 Query: 729 TTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + + ++L V DTG+G+T L+ PF Q S GTGLGL + K +V+ Sbjct: 659 SADLKDSTMVLHFAVHDTGMGITEEVLDGLFTPFSQADGSTARLYGGTGLGLAICKQLVE 718 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPL 810 G+ + ST +GT P Sbjct: 719 LMGGQISLASTWGQGTTATCKIPF 742 >gi|294636745|ref|ZP_06715085.1| signal transduction histidine-protein kinase AtoS [Edwardsiella tarda ATCC 23685] gi|291090046|gb|EFE22607.1| signal transduction histidine-protein kinase AtoS [Edwardsiella tarda ATCC 23685] Length = 593 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 92/372 (24%), Positives = 174/372 (46%), Gaps = 40/372 (10%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 I+E +DG+ I+R G + + N A + GY +++++ +P+ + H+ + + Sbjct: 252 IIENAADGVIAIDRLGAVTTINPAAEAITGYTLDELVGQPYAALFSDS------HFASPV 305 Query: 517 LSLDLRQTLEKITLGSTKE------EKLLSLRIIIKKL--PFSSCYS--LTMHDISEWKQ 566 L TL T +E + + L + ++ P + D++ K+ Sbjct: 306 LD-----TLAHGTAHLAQEVSFPARHRTIELSVTTSRIHNPHGELMGALVIFSDLTARKE 360 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + +L+ +++A + +A V+HE+R PLTAI G+ ++I Q P + EY Sbjct: 361 AQRRLAQTERLATL-----GELMAGVAHEVRNPLTAIRGYVQIICQQTT----LPAHQEY 411 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + + + + + ++ LLD S+ + ++ VSL+ + EA+ LVQ + RI Sbjct: 412 LSVVLKEIDSINKVIQQLLDFSRPRQSQ----WQRVSLNALIEEALILVQTSGVQARITF 467 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 +P I+AD +KQ+ LNIL NA+ + G+I I T + + + + D+G Sbjct: 468 HCELDRTLPAIVADRELIKQVLLNILINAVQAISARGEIRIRTQQRTPTQQTVTIEDSGC 527 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +K PF + GTGLGL L++ +++A+ G + STP G+ + Sbjct: 528 GIDIALQKKIFDPFF------TTKASGTGLGLALSQRIINAHSGDIDVVSTPGSGSTFTL 581 Query: 807 IFPLYDTSHPHD 818 PL P + Sbjct: 582 TLPLNPPESPAE 593 >gi|161830206|ref|YP_001596560.1| putative aerobic respiration control sensor protein arcB [Coxiella burnetii RSA 331] gi|215919011|ref|NP_819664.2| putative aerobic respiration control sensor protein arcB [Coxiella burnetii RSA 493] gi|161762073|gb|ABX77715.1| putative aerobic respiration control sensor protein arcB [Coxiella burnetii RSA 331] gi|206583896|gb|AAO90178.2| two component system histidine kinase [Coxiella burnetii RSA 493] Length = 630 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 96/355 (27%), Positives = 174/355 (49%), Gaps = 27/355 (7%) Query: 469 NREGIILSTNRAVSKLFGY--PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL- 525 +R + L N +KL G+ P I + F ++ Q S+ T++ L+ +Q + Sbjct: 139 DRNFVYLGCNHNFAKLVGFETPESIIGKTDFDLWRSQGANSIRP---TDVEVLEGKQLVD 195 Query: 526 --EKITLGSTKEEKLLSLRIIIKKLPFSSCYS------LTMHDISEWKQEKNKLSHAKKI 577 + ++L + KE L I K+P + + DI+E KQ + KL AK Sbjct: 196 VEQSLSLPNGKEGVFL-----ISKVPLRDERNEIIGILVVGTDITERKQNEQKLIEAKLQ 250 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE KS+F+A +SH++RTP+ I+G +++ P N + S NL+ Sbjct: 251 AELSDRAKSEFIANISHDLRTPINGILGIAQIFNMHEHTKKQEP----LINDLSASANLL 306 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696 L +V D+LD +++E GK+ L + +L + V+ + +K+I I + ++P Sbjct: 307 LGLVEDILDFARLEVGKLELKYSTFNLRQLVTFLVKTFSFQTQQKQIKINVYYDASLPDS 366 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VRDTGVGMTNYELE 754 I+++ +++I LN++ NA+ FT GQI ++ N+ +L+ V+DTG+G+ +L Sbjct: 367 IVSEPNYIRRIFLNLIGNAVKFTEK-GQIDVTVNLEGNKPAMLKILVKDTGIGIPKDKLN 425 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F + R EG GLGL + K ++D G+ ++ S +G+ + P Sbjct: 426 TIFDRFSRATPVYSSRYEGLGLGLSIIKRLLDNLGGEVHVSSIENEGSTFTLTIP 480 >gi|294665140|ref|ZP_06730442.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605101|gb|EFF48450.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 1214 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 127/241 (52%), Gaps = 8/241 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S K+ FLA + HE+RTP+T ++G SE++ +P Y I R Sbjct: 832 HKQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT----TQDPTQRSYTESIRR 887 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--RILIRTSF 690 +G +L +VND LD+++IESG++ L F+P S+ + V+E +L+ A E+ R + Sbjct: 888 AGAHLLRLVNDALDLARIESGRLELDFQPFSVRQLVAEVEALMAPLAQERGLRFSLEIGL 947 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 +I D ++QI LN+L+NAI FT G + TT S + + V DTG G+ Sbjct: 948 LGDI-TASGDSTRIRQILLNLLNNAIKFTERGVVALKLTTLGSYQGLRFEVADTGPGINA 1006 Query: 751 YELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + + F Q ++ R G+GLGL + + + A G + S GT + P Sbjct: 1007 EQKARLFQRFEQGDGAKTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTRFVVDLP 1066 Query: 810 L 810 L Sbjct: 1067 L 1067 >gi|269963512|ref|ZP_06177837.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831687|gb|EEZ85821.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 859 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 138/263 (52%), Gaps = 17/263 (6%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ + + + + A++ AEK + ++DFLA++SHEIRTP+ I+G ++++K+ Sbjct: 457 QDITTLIEAEKQSNIARREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKD------ 510 Query: 619 GNPRYIEYANYID---RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + E N ID SG +L ++ND+LD SKIE GK N+ P S + + ++ Sbjct: 511 -SVETEEQKNQIDVLCHSGEHLLAVLNDILDFSKIEQGKFNIQKHPFSFTDTMRTLENIY 569 Query: 676 QLYANEK--RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-- 731 + + K ++I N+ I D + QI N++SNA+ FTPSG + + Sbjct: 570 RPICSNKGVELVIENKLDPNV-EIFTDQVRLNQILFNLVSNAVKFTPSGSIRLNAELEQF 628 Query: 732 --TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 N +++ + DTG+G+ + +L++ +PF Q + G+GLGL + K +VD Sbjct: 629 YGADNSVLVVEITDTGIGIESDKLDQMFEPFVQEEATTTREYGGSGLGLTIVKNLVDMLE 688 Query: 790 GKFYIFSTPAKGTLIEIIFPLYD 812 G + S+ GT + P+ D Sbjct: 689 GDVQVRSSKGVGTTFVVTLPVKD 711 >gi|254883721|ref|ZP_05256431.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] gi|254836514|gb|EET16823.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] Length = 667 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/239 (33%), Positives = 132/239 (55%), Gaps = 12/239 (5%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK+ AE+ + K+ FLA +SHEIRTPL AI+GFS V+ + P +Y + I ++ Sbjct: 435 AKEKAEESNRLKTAFLANMSHEIRTPLNAIVGFSSVLVSDDSSPAEKE---QYCDIIQKN 491 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 +L+L ++ND+LDIS++ESG++ +E + E A+S V+ Y + L F Sbjct: 492 SDLLLHLINDILDISRMESGRIKFVWEECDVVELCQTALSTVE-YGRKTSALFL--FETP 548 Query: 694 IPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 +P ++ D + +KQ+ +N+LSNA FTPSG + ++++ L V DTG G+ Sbjct: 549 VPSLVVKTDAQRLKQVLINLLSNAAKFTPSGSIKLTVAIDKQHQQLELSVSDTGCGIPPD 608 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + EK + F ++ Q GTGLGL +++ +++ GK ++ +G PL Sbjct: 609 KSEKVFERFEKLNEYSQ----GTGLGLAISRLIIENLGGKIWVDKDYTEGARFVFTHPL 663 >gi|239906417|ref|YP_002953158.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239796283|dbj|BAH75272.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 919 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 135/253 (53%), Gaps = 16/253 (6%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + + E ++E++ L+ A++ AE S KS FLA +SHEIRTPL+ IIG +++ Q Sbjct: 401 VLRHVKERRREED-LTTARRQAEAASQAKSGFLANMSHEIRTPLSGIIGLTQMTLTQ--- 456 Query: 617 PLGNPR--YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD--EAVSEAI 672 NPR E I S +L IVND+LD SKIE+GKM F PV D + + + Sbjct: 457 ---NPRPEIRENLELILDSSRSLLGIVNDILDFSKIEAGKM--EFVPVDFDLRDTLDRTM 511 Query: 673 SLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTT 730 Q A +K + + +P ++ D + Q+ N++ NA+ FT G ++ +S Sbjct: 512 KSFQFSARQKGLTLGVRIDPQVPAMVHGDPDRIMQVVRNLVGNALKFTDQGEVEVTLSLA 571 Query: 731 HTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + ++ VRDTG+G+ L + + F Q+ +++ R GTGLGL +++ +V+ Sbjct: 572 RPGDPMLVSCSVRDTGIGIPEDRLHELFQVFSQLESTRAKRYGGTGLGLAISRRLVEMMG 631 Query: 790 GKFYIFSTPAKGT 802 G + S P +G+ Sbjct: 632 GAIDVESVPGQGS 644 >gi|194017200|ref|ZP_03055812.1| alkaline phosphatase synthesis sensor protein PhoR [Bacillus pumilus ATCC 7061] gi|194011068|gb|EDW20638.1| alkaline phosphatase synthesis sensor protein PhoR [Bacillus pumilus ATCC 7061] Length = 580 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 110/408 (26%), Positives = 185/408 (45%), Gaps = 56/408 (13%) Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM---------QLCSILEATSDGIAII 468 E+ N N + IE +++T + + ++ M +L +++E GI +I Sbjct: 197 LERGNYDTNNYEELMIETSELNTSMKRLAESLQEMTSAGEMQRDRLQTVIENIGAGIILI 256 Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 ++ G I NR RK F V Q + Y ++ + +++I Sbjct: 257 DKMGYIHLVNRT------------FRKQFKV---QKHIYMHKLYHEAFTHEEIIELIDEI 301 Query: 529 TLGSTKEEKLLSLRIIIKKLPFS-------------SCYSLTMHDISEWKQEKNKLSHAK 575 + TK K L L + I++ F L HD++E KQ L + Sbjct: 302 FMTETKVRKFLRLAVDIERRYFQVDGVPILSTDDEWKGIVLVFHDVTETKQ----LEQMR 357 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSG 634 K DF+A VSHE++TP+T+I GFSE + + G + + + E+ + I + Sbjct: 358 K----------DFVANVSHELKTPITSIKGFSETLLD---GAIDDKEALTEFLSIILKES 404 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 + ++ DLLD+SKIE + L+ + + E + E L++ A EK I + Sbjct: 405 VRLETLIQDLLDLSKIEQQQFKLNIQEANATEIIQEIQVLLKQKATEKGIQLHVRVPKEP 464 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 ++AD +KQI LN+++NA+ +TP GG + IS V DTG+GM E+ Sbjct: 465 VYVMADPLRLKQIFLNLVNNALTYTPEGGSVTIS-ARPRKGAYEFDVADTGIGMKKSEIP 523 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + + F +I + GTGLGL + K +V+A+ G + S KGT Sbjct: 524 RIFERFYRIDKDRSRNSGGTGLGLAIVKHLVEAHEGTISVRSKQGKGT 571 >gi|119486144|ref|ZP_01620204.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119456635|gb|EAW37764.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1410 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/281 (28%), Positives = 139/281 (49%), Gaps = 35/281 (12%) Query: 546 KKLPFSSCYSLTMHDISEW-------KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 K PF + + +++W ++ L+ + A + KS+FLA +SHEIRT Sbjct: 629 KTEPFKAVDRELLKLMAQWIGSELERQKTAQDLAKVRDEALAATKAKSEFLATMSHEIRT 688 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 P+ A+IG + ++ + R +Y I S + +L ++ND+LD SKIESGK+ L Sbjct: 689 PMNAVIGMTGLLLDTRLTSTQQ----DYVETIRSSSDALLSLINDILDFSKIESGKLELE 744 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIH 717 P L + E++ L+ A K I + P +++ D ++QI +N+LSNA+ Sbjct: 745 QHPFDLRTCIEESLDLLATKAVSKNIELAYLIDPITPSKVIGDGARLRQILVNLLSNAVK 804 Query: 718 FTPSGGQIIIS----------------------TTHTSNEEVILRVRDTGVGMTNYELEK 755 FT + G+++IS TT + ++ VRDTG+G+ + + Sbjct: 805 FTET-GEVVISLKAVSLEPIVSEENLDENSTETTTQPNRYQIQFAVRDTGIGIPPARMNR 863 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 K F Q+ +S + GTGLGL ++K + + G+ ++ S Sbjct: 864 LFKSFSQVDSSTSRQYGGTGLGLVISKRLAEMMGGQMWVES 904 >gi|119946606|ref|YP_944286.1| fused histidine kinase sensor/response regulator [Psychromonas ingrahamii 37] gi|119865210|gb|ABM04687.1| fused histidine kinase sensor and response regulator containing ATPase domain [Psychromonas ingrahamii 37] Length = 1121 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 134/239 (56%), Gaps = 6/239 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q + L AK++AE + KS +LA +SHE+RTPL ++G+++++ P I Sbjct: 651 EQTSSALQVAKEVAEAANEAKSRYLAGLSHELRTPLNVLLGYAQLLSRDPALPFKQREII 710 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + R+G + D++ LL+ISKIE+G++NL + +L + + + + Q+ A++KR+ Sbjct: 711 ---GIVKRNGEHLADLIEGLLEISKIEAGRVNLQRDEFNLKAILQQLVDMFQMQASKKRL 767 Query: 685 LIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + N+P +A D + ++QI +N++SNAI +T G + T+ S E V D Sbjct: 768 KFYYLASPNLPDYVATDKQRLRQILINLISNAIKYTEQ-GSVTFKVTYRS-EVAHFSVID 825 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TG G++ E KPF QI N GTGLGL +++++ + G+ + S+ +G+ Sbjct: 826 TGPGISKSNQELIFKPFEQIRNDHTKAISGTGLGLTISRSLAELMGGEISLTSSIGQGS 884 >gi|42525106|ref|NP_970486.1| hypothetical protein Bd3779 [Bdellovibrio bacteriovorus HD100] gi|39577317|emb|CAE81140.1| hypothetical protein Bd3779 [Bdellovibrio bacteriovorus HD100] Length = 449 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/252 (30%), Positives = 127/252 (50%), Gaps = 5/252 (1%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 ++ E K +L A++ A + SS KS FL+ +SHEIRTPL +IIGFS+++++ R Sbjct: 199 ELHEMAYSKYQLVQAREEALQLSSIKSTFLSNMSHEIRTPLNSIIGFSDILRDTRL---- 254 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + +Y I R + +L I+ND+LDISKIE+G + + + E ++ + + Sbjct: 255 DKDQTDYVQTIQRCSDSLLHIINDVLDISKIENGLLQIDRHKFDVKELHTDIFKIFEAKC 314 Query: 680 NEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 EK + + +IP L D ++QI +N++ NA+ FT G I + + Sbjct: 315 QEKNLQLEVDIDESIPAFALGDSHRLRQILMNLVGNAVKFTDKGRVCISLQRQPGSGHYV 374 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +V DTG G+ + K + F Q S G+GLGL + K +V+ G + S Sbjct: 375 WKVSDTGRGIRLENMSKLFRSFSQEDVSISRTYGGSGLGLMICKNLVEMMGGDIKVESKL 434 Query: 799 AKGTLIEIIFPL 810 +GT PL Sbjct: 435 GEGTTFHFTLPL 446 >gi|161613012|ref|YP_001586977.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161362376|gb|ABX66144.1| hypothetical protein SPAB_00718 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 948 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/261 (31%), Positives = 132/261 (50%), Gaps = 7/261 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 442 VLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 500 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 501 PKGVERLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 557 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT G I+ + Sbjct: 558 PLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG--CIVLHVRCDGD 615 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 616 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 675 Query: 796 STPAKGTLIEIIFPLYDTSHP 816 S P G+ + PLY +P Sbjct: 676 SEPGMGSQFTLRIPLYGAQYP 696 >gi|129306903|gb|ABO30414.1| GacS [Pseudomonas sp. P97.38] Length = 204 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 124/206 (60%), Gaps = 8/206 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y I++S + +L I+N++ Sbjct: 3 KSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQLDYLGTIEKSADSLLGIINEI 58 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRTSFANNIPRILADLRS 703 LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ + + ++ D Sbjct: 59 LDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLSLVGDPLR 118 Query: 704 VKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 +KQI N++SNAI FT G + ++ H + ++ + ++DTG+G++ ++ + F Sbjct: 119 LKQILTNLVSNAIKFTREGTIVARAMLEDEHEDSVQLRISIQDTGIGLSAQDVRALFQAF 178 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVD 786 Q NS + GTGLGL ++K +V+ Sbjct: 179 SQADNSLSRQPGGTGLGLVISKRLVE 204 >gi|164686079|ref|ZP_01947585.2| putative aerobic respiration control sensor protein arcB [Coxiella burnetii 'MSU Goat Q177'] gi|212219130|ref|YP_002305917.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154] gi|164601638|gb|EAX31792.2| putative aerobic respiration control sensor protein arcB [Coxiella burnetii 'MSU Goat Q177'] gi|212013392|gb|ACJ20772.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154] Length = 551 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 95/350 (27%), Positives = 174/350 (49%), Gaps = 17/350 (4%) Query: 469 NREGIILSTNRAVSKLFGY--PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL- 525 +R + L N +KL G+ P I + F ++ Q S+ T++ L+ +Q + Sbjct: 60 DRNFVYLGCNHNFAKLVGFETPESIIGKTDFDLWRSQGANSIRP---TDVEVLEGKQLVD 116 Query: 526 --EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEKES 582 + ++L + KE L +++++ L + DI+E KQ + KL AK AE Sbjct: 117 VEQSLSLPNGKEGVFLISKVLLRDERNEIIGILVVGTDITERKQNEQKLIEAKLQAELSD 176 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 KS+F+A +SH++RTP+ I+G +++ P N + S NL+L +V Sbjct: 177 RAKSEFIANISHDLRTPINGILGIAQIFNMHEHTKKQEP----LINDLSASANLLLGLVE 232 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADL 701 D+LD +++E GK+ L + +L + V + +K+I I + ++P I+++ Sbjct: 233 DILDFARLEVGKLELKYSTFNLRQLVIFLVKTFSFQTQQKQIKINVYYDASLPDSIVSEP 292 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKP 759 +++I LN++ NA+ FT GQI ++ N+ +L+ V+DTG+G+ +L Sbjct: 293 NYIRRIFLNLIGNAVKFTEK-GQIDVTVNLEGNKPAMLKILVKDTGLGIPKDKLNTIFDR 351 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F + R EG GLGL + K +VD G+ ++ S +G+ + P Sbjct: 352 FSRATPVYSSRYEGLGLGLSIIKRLVDNLGGEVHVSSIENEGSTFTLTIP 401 >gi|150007677|ref|YP_001302420.1| putative two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|256839938|ref|ZP_05545447.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|149936101|gb|ABR42798.1| putative two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|256738868|gb|EEU52193.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 364 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 93/276 (33%), Positives = 141/276 (51%), Gaps = 16/276 (5%) Query: 537 KLLSLRIIIKKLPFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 K + L I+ L SS L M +DISE K + ++ A EK KS FLA +SHE Sbjct: 98 KWIRLDIMEAGLEKSSPILLLMNYDISELKAMEERMLKA----EKSERLKSSFLANISHE 153 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 IR PL AI+GFS ++ ++ G L EY N I + L+L IVND+LD++K+ESG M Sbjct: 154 IRMPLNAIVGFSSLLGDEEDGELRQ----EYINLIQTNNELLLGIVNDVLDLAKLESGTM 209 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 F L + + E ++ Q+ L + ++ + +D +KQ+ N ++NA Sbjct: 210 TFDFMEFDLRQLIVETVASFQIKVPRGVALTYPASLDSF-LLRSDRIRLKQVLGNFITNA 268 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 I +T S G II+S N EV+L V DTG GM+ F + N +Q G G Sbjct: 269 IKYT-SIGSIILSYQAMEN-EVLLSVTDTGEGMSEEIKLHVFDRFYKGRNQKQ----GIG 322 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 LGL + + +++ G+ + S KG+ P++ Sbjct: 323 LGLSICQNIIERLGGRIGVSSEQGKGSCFWCTLPIF 358 >gi|150399364|ref|YP_001323131.1| integral membrane sensor signal transduction histidine kinase [Methanococcus vannielii SB] gi|150012067|gb|ABR54519.1| integral membrane sensor signal transduction histidine kinase [Methanococcus vannielii SB] Length = 641 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 127/225 (56%), Gaps = 3/225 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KSD +A VSHE+RTPLT+I G+ E++ + G + N + D + + ++ + Sbjct: 410 KSDLIAIVSHELRTPLTSIKGYVELVLDGTMGTI-NESQRKCLQVADDNIIRLRRLIESM 468 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+SKIE G++ ++ E +++ + VS+ I + A EK I ++ + + I AD + Sbjct: 469 LDLSKIERGELEMYREAMNVKDTVSDVIEYLTPLATEKNIKLKQDIKDLL--INADKDRI 526 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 Q+ N++ NAI F+P+ I+I T N +V + V+D G G+ +LEK F Q+ Sbjct: 527 TQVFTNLIENAIKFSPANESIMIIGKETENGDVHITVKDNGAGIPKKDLEKIFDQFYQVD 586 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +S + + G+GLGL + K+++ A+ G ++ S +G+ I+ P Sbjct: 587 SSTKRKKGGSGLGLAVCKSIIQAHGGTIWVESELGRGSTFHIVLP 631 >gi|88798399|ref|ZP_01113984.1| Signal transduction histidine kinase [Reinekea sp. MED297] gi|88778839|gb|EAR10029.1| Signal transduction histidine kinase [Reinekea sp. MED297] Length = 589 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 129/236 (54%), Gaps = 10/236 (4%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A++ S KS+FLA +SHE+RTPL IIG ++++++ P +P + N + S + Sbjct: 217 AQQASKAKSEFLATMSHELRTPLNGIIGSVQLMQHEAEQP--SP----WLNSLAVSSEAL 270 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696 L +ND+LD S IESG++++ P L + + + ++ + + +L+R + Sbjct: 271 LTQINDVLDFSSIESGQISIEPAPCDLIQMIRDIEAVFYPQSVDAELLLRVLLPDTWSSH 330 Query: 697 --ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 ++AD ++QI LN+LSNA FT GQI+++ + + RV DTG+G+ +LE Sbjct: 331 CWVMADGHKIRQILLNLLSNAFKFT-EHGQIVLAVQKQEDGQFQWRVSDTGIGIPADKLE 389 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F Q + Q + G+GLGL +++ + + G + S P +GT + PL Sbjct: 390 AIFQSFQQAESDTQRQYGGSGLGLAISRRLAELMGGSLTVTSKPGQGTDFTLTLPL 445 >gi|330969015|gb|EGH69081.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 1188 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 81/263 (30%), Positives = 134/263 (50%), Gaps = 10/263 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ--RFGP 617 DI+E KQ + +L A ++A + + KS FLA +SHEIRTP+ AIIG E+ Q R G Sbjct: 671 DITERKQLEQQLQEATRLAAQANEAKSAFLASMSHEIRTPMGAIIGLLELECEQALRLGM 730 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + + + ++ A+ RS ++ ++ + LD+++IE+G M L SL I L Sbjct: 731 MPS-QGLQVAH---RSATELVALIGESLDLARIEAGGMQLSLAVTSLRGLFDGVIELFSA 786 Query: 678 YANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTS 733 A EK + +R A D ++Q+ N+L NA+ FT G ++ +++ Sbjct: 787 QAREKGVELRLELSAQARGDYWLDPLRLRQVLHNVLGNALKFTRQGAVVVRLDVTSDSPD 846 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + V + ++D+G G+ ++ +PF Q + G+GLGL + + +V G Sbjct: 847 STRVRIGIQDSGEGIDPQRQQQVFQPFTQANDDTAAHYGGSGLGLSITRQLVALMKGDIS 906 Query: 794 IFSTPAKGTLIEIIFPLYDTSHP 816 + S P KGTL+ I PL S P Sbjct: 907 LHSEPGKGTLVTIDLPLTRVSEP 929 >gi|325090376|gb|EGC43686.1| histidine kinase [Ajellomyces capsulatus H88] Length = 2345 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 132/255 (51%), Gaps = 14/255 (5%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H K+ E + KS FLA VSH++RTP+ +IG SE++K + Y I Sbjct: 1822 HNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLSELLKKTNL----DREQDGYVESIRV 1877 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 + +L ++ND+LD SK+E+GKM + P++L E ++E + ++ Y + R L + Sbjct: 1878 CADTLLTLINDILDFSKLEAGKMKVSTVPLNLRETIAEVVRALR-YTHRDRGLQTIEDLD 1936 Query: 693 NIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGV 746 + +L D + QI +N+LSN+ FTP G + + ++ + +V DTG+ Sbjct: 1937 GVDPNLLVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVKAKAADEDDGRIRITCKVADTGI 1996 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLIE 805 G++ +L + +PF Q +S G+GLGL + KA++ D GK ++ S GT Sbjct: 1997 GISGEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEEGVGT--T 2054 Query: 806 IIFPLYDTSHPHDCI 820 + F L + P + + Sbjct: 2055 VTFTLVLSKAPKNAV 2069 >gi|283851409|ref|ZP_06368690.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573147|gb|EFC21126.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 837 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 95/357 (26%), Positives = 167/357 (46%), Gaps = 26/357 (7%) Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK- 527 +R+ +L N A L+GY E+ L + + P M Y+ E D+R+ +E+ Sbjct: 341 DRDRNVLYWNPASEALYGYSREEALGQKLETLI---IPPAMRPYVVE----DIRRWIEEG 393 Query: 528 --ITLGSTKEEKLLSLRI------IIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIA 578 I G + + + ++++ C + D++E + + +L +K A Sbjct: 394 RPIPAGELRLSRQDGSEVPVFSSHVLQQTGSGDCELFCLDIDLTETEAMRKELIASKDAA 453 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 + K++FLA +SHEIRTPL I G +++ P + EY +S + Sbjct: 454 VAANRAKTEFLANMSHEIRTPLNGIYGMLQLLATT--SP--DDEQQEYVTAALKSAKRLS 509 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RI 697 +++D+LD+SKIE+ K+++ + E V + L A EK + I+ S + IP + Sbjct: 510 SLLSDILDLSKIEANKLDICRKAFPFQELVQSLKDIFVLSAREKALRIKFSVEDGIPGHL 569 Query: 698 LADLRSVKQIALNILSNAIHFTPSGG----QIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 + D V+QI N++ NAI FT +GG ++ + ++ V+DTG+G+ ++ Sbjct: 570 VGDEIRVRQILFNLIGNAIKFTETGGVAVKACLLPESADGRVRILFSVKDTGIGIREDKV 629 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +PF Q S +G GLGL + K +V+ G I S GT I + P Sbjct: 630 HYVFEPFAQADGSYIREQQGAGLGLTIVKRVVEMLDGILCIDSKFGSGTTISVALPF 686 >gi|168818004|ref|ZP_02830004.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197247563|ref|YP_002147227.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211266|gb|ACH48663.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205345045|gb|EDZ31809.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 948 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/261 (31%), Positives = 132/261 (50%), Gaps = 7/261 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 442 VLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 500 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 501 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 557 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT G I+ + Sbjct: 558 PLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG--CIVLHVRCDGD 615 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 616 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 675 Query: 796 STPAKGTLIEIIFPLYDTSHP 816 S P G+ + PLY +P Sbjct: 676 SEPGMGSQFTLRIPLYGAQYP 696 >gi|29345776|ref|NP_809279.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29337669|gb|AAO75473.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1420 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 134/253 (52%), Gaps = 12/253 (4%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 ++K +L + ++ + K F ++HE RTP+T IIG E + NP+ IE Sbjct: 884 RQKAQLIRMSRKVQELTLDKISFFTNITHEFRTPITLIIGPIERALKLSY----NPQVIE 939 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 N+++R+ +L +VN L+D K+ESGK+ + + + + I+ +++A E+ I+ Sbjct: 940 QLNFVERNSKYLLSLVNQLMDFRKVESGKLEIVKTRGNFLKFIDSLITPFEVFAQERNIV 999 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-----IISTTHTSNEEVILR 740 ++ + +P IL D +++++ N+LSNAI FTP+GG + + + E + + Sbjct: 1000 LKRYYRMEMPEILYDEEAMRKVVTNLLSNAIKFTPNGGTVSLYLSALFAKDSEKETLYIC 1059 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQ--IRGE-GTGLGLPLAKAMVDANMGKFYIFST 797 V+D+G G+ +L + F Q N + + G+ GTG+GL L K +V + G+ F+ Sbjct: 1060 VKDSGSGIPEEDLNRIFNRFYQSQNQVKYPVYGQAGTGIGLYLCKRIVQMHGGEIKAFNN 1119 Query: 798 PAKGTLIEIIFPL 810 G I+ PL Sbjct: 1120 RHAGCSFRILLPL 1132 >gi|60680665|ref|YP_210809.1| putative two-component system sensor histidine kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] gi|60492099|emb|CAH06862.1| putative two-component system sensor histidine kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] Length = 637 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 91/268 (33%), Positives = 132/268 (49%), Gaps = 24/268 (8%) Query: 549 PFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 PF L + HDI + + +L AK+ AE+ KS FLA +SHEIRTPL AI+GFS Sbjct: 247 PFEGNKVLALIHDIGDRMRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFS 306 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 E+I EY I ++ NL+L ++ND+LD+S+IESGK +H + Sbjct: 307 EIIALTE----DEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQ------- 355 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR------ILADLRSVKQIALNILSNAIHFTPS 721 ++E LV R+ ++ N+ R I D V Q+ N LSNAI T Sbjct: 356 LTEMSGLVDEVDKVHRLKMKKGVKLNVIRPSEEIWISTDRNRVTQVLFNFLSNAIKNTIE 415 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 G I E V L V DTG G++ +L F ++ + Q GTGLGLP+ Sbjct: 416 GS--ITFGLVKEEEWVKLYVTDTGCGISKEKLPLIFTRFEKLNDFVQ----GTGLGLPIC 469 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K++V+ G+ + S +G+ + P Sbjct: 470 KSIVERLGGRIEVESELGQGSTFILYLP 497 >gi|16765598|ref|NP_461213.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167549739|ref|ZP_02343498.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992601|ref|ZP_02573698.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168242383|ref|ZP_02667315.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261719|ref|ZP_02683692.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194449775|ref|YP_002046325.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|200387073|ref|ZP_03213685.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|20139412|sp|P58662|RCSC_SALTY RecName: Full=Sensor protein rcsC; AltName: Full=Capsular synthesis regulator component C gi|16420809|gb|AAL21172.1| sensory histidine kinase in two-component regulatory system with RcsB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194408079|gb|ACF68298.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|199604171|gb|EDZ02716.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205325492|gb|EDZ13331.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329183|gb|EDZ15947.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205338298|gb|EDZ25062.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205349323|gb|EDZ35954.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|229918798|gb|ACQ91083.1| RcsC [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|261247479|emb|CBG25306.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994357|gb|ACY89242.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158829|emb|CBW18342.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913261|dbj|BAJ37235.1| hybrid two-component sensor kinase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223029|gb|EFX48100.1| Two-component sensor protein RcsC [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130601|gb|ADX18031.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989204|gb|AEF08187.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 948 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/261 (31%), Positives = 132/261 (50%), Gaps = 7/261 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 442 VLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 500 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 501 PKGVERLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 557 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT G I+ + Sbjct: 558 PLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG--CIVLHVRCDGD 615 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 616 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 675 Query: 796 STPAKGTLIEIIFPLYDTSHP 816 S P G+ + PLY +P Sbjct: 676 SEPGMGSQFTLRIPLYGAQYP 696 >gi|323967661|gb|EGB63073.1| hsp90-like protein [Escherichia coli M863] gi|327252488|gb|EGE64147.1| signal transduction histidine-protein kinase atoS [Escherichia coli STEC_7v] Length = 608 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 95/398 (23%), Positives = 189/398 (47%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 229 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 288 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NTP + + +L L E + L + E Sbjct: 289 PAAEVITGYQRHELVGQPYSMLFD-NTP-----FYSPVLD-TLEHGTEHVALEISFPGRE 341 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 342 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 396 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q P+ + EY + + + + + ++ LL+ S+ Sbjct: 397 AHEVRNPLTAIRGYVQILRQQTSDPI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 452 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 453 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPISADRELLKQVLLNIL 508 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 509 INAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLSLQKKIFDPFF------TTKAS 562 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 563 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 600 >gi|170767641|ref|ZP_02902094.1| sensor histidine kinase/response regulator RcsC [Escherichia albertii TW07627] gi|170123975|gb|EDS92906.1| sensor histidine kinase/response regulator RcsC [Escherichia albertii TW07627] Length = 933 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 131/257 (50%), Gaps = 7/257 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 429 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 487 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 488 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 544 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT +G I+ + + Sbjct: 545 VRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVRVEGDYLS 602 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 603 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 662 Query: 799 AKGTLIEIIFPLYDTSH 815 G+ + PLY + Sbjct: 663 GMGSQFTVRIPLYGAQY 679 >gi|168466036|ref|ZP_02699906.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195631257|gb|EDX49817.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 948 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 131/258 (50%), Gaps = 7/258 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG--CIVLHVRCDGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHP 816 G+ + PLY +P Sbjct: 679 GMGSQFTLRIPLYGAQYP 696 >gi|261416190|ref|YP_003249873.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372646|gb|ACX75391.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327682|gb|ADL26883.1| sensor histidine kinase/response regulator [Fibrobacter succinogenes subsp. succinogenes S85] Length = 794 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 139/263 (52%), Gaps = 22/263 (8%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKN-----QRFGPLG 619 + K ++++ +K AE + KS FL +SH+IRTPL A+IGF+++ +KN + LG Sbjct: 399 ETKREMANLEK-AELANKAKSAFLFNMSHDIRTPLNAMIGFTDMAVKNIDDKAKALDCLG 457 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + S +L ++ND+LD+S+IESGK+ L PV+LDE + + +++ A Sbjct: 458 KSKL---------SSEHLLSLINDVLDMSRIESGKVELDLNPVNLDENGEDCVPMLRSLA 508 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 +K + + + R + D + Q+ +N++SNA+ +TPSGG + + T +E Sbjct: 509 EKKNVHFEFAHHDIQNRYVYVDFLRLNQVIINVVSNAVKYTPSGGSVTVDITQIPSEREG 568 Query: 737 ---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + ++DTG+GM+ + F + S + +GTGLGL + K +VD G Sbjct: 569 YGLYQIVIKDTGIGMSAEYQQHLFDEFSRERTSTVSKQQGTGLGLAITKRIVDMMEGSID 628 Query: 794 IFSTPAKGTLIEIIFPLYDTSHP 816 + S +G+ I P+ +P Sbjct: 629 VESKVGEGSKFTIRIPMRIQENP 651 >gi|213646233|ref|ZP_03376286.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 961 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 131/258 (50%), Gaps = 7/258 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG--CIVLHVRCDGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHP 816 G+ + PLY +P Sbjct: 679 GMGSQFTLRIPLYGAQYP 696 >gi|328873791|gb|EGG22157.1| histidine kinase [Dictyostelium fasciculatum] Length = 1072 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 101/357 (28%), Positives = 168/357 (47%), Gaps = 39/357 (10%) Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS---VMNHYLTEILSLD 520 G+ +G I+ N A FGY D L ++ P + L E+ S Sbjct: 579 GVMFSTLKGTIIDANDAFLSTFGYSRSD-LENGHVDWMMMTPPEYYEISARALQELKSKR 637 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 Q +EK + + + + + C + D+S ++Q + A K+ Sbjct: 638 WCQPIEKAYFHRSGAKVPVLISAAMVDGTDEQCITFVF-DLSRYRQAEESAIQANKL--- 693 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 KS F+A +SHE+RTP I+G +++I + + P + A I +S + ++ + Sbjct: 694 ----KSQFIANISHELRTPCHGILGMTQIILDSK---ELTPSQRDNAETIKKSTDNLVSL 746 Query: 641 VNDLLDISKIESGKMNL---HFEPVSLDEAV---------SEAISLVQLYANEKRILIRT 688 ++D+LD SKIESGKM L FE VS+ E V ++AI LV + E + Sbjct: 747 IDDILDFSKIESGKMTLDFSSFELVSMVEQVLHEHSKLSNAKAIDLVFIMGREYPV---- 802 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTG 745 P + D + +KQI N++SNA+ FT +G +I IST + S +++ L+ V+DTG Sbjct: 803 -----PPVLFGDRKRIKQILSNLVSNAVKFTEAGHVLIEISTEYESGDQISLKFSVQDTG 857 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + PF Q+ S + G+GLGL + K +VD G S +G+ Sbjct: 858 IGIPHENASQLFVPFIQLDGSSSRKHGGSGLGLSIVKELVDLMGGTLSFESKKGQGS 914 >gi|212212885|ref|YP_002303821.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212] gi|212011295|gb|ACJ18676.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212] Length = 630 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 96/355 (27%), Positives = 174/355 (49%), Gaps = 27/355 (7%) Query: 469 NREGIILSTNRAVSKLFGY--PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL- 525 +R + L N +KL G+ P I + F ++ Q S+ T++ L+ +Q + Sbjct: 139 DRNFVYLGCNHNFAKLVGFETPESIIGKTDFDLWRSQGANSIRP---TDVEVLEGKQLVD 195 Query: 526 --EKITLGSTKEEKLLSLRIIIKKLPFSSCYS------LTMHDISEWKQEKNKLSHAKKI 577 + ++L + KE L I K+P + + DI+E KQ + KL AK Sbjct: 196 VEQSLSLPNGKEGVFL-----ISKVPLRDERNEIIGILVVGTDITERKQNEQKLIEAKLQ 250 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE KS+F+A +SH++RTP+ I+G +++ P N + S NL+ Sbjct: 251 AELSDRAKSEFIANISHDLRTPINGILGIAQIFNMHEHTKKQEP----LINDLSASANLL 306 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696 L +V D+LD +++E GK+ L + +L + V+ + +K+I I + ++P Sbjct: 307 LGLVEDILDFARLEVGKLELKYSTFNLRQLVTFLVKTFSFQTQQKQIKINVYYDASLPDS 366 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VRDTGVGMTNYELE 754 I+++ +++I LN++ NA+ FT GQI ++ N+ +L+ V+DTG+G+ +L Sbjct: 367 IVSEPNYIRRIFLNLIGNAVKFTEK-GQIDVTVNLEGNKPAMLKILVKDTGIGIPKDKLN 425 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F + R EG GLGL + K ++D G+ ++ S +G+ + P Sbjct: 426 TIFDRFSRATPVYSSRYEGLGLGLSIIKRLLDNLGGEVHVSSIENEGSTFTLTIP 480 >gi|168229631|ref|ZP_02654689.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194468800|ref|ZP_03074784.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194455164|gb|EDX44003.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335848|gb|EDZ22612.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 948 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 131/258 (50%), Gaps = 7/258 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG--CIVLHVRCDGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHP 816 G+ + PLY +P Sbjct: 679 GMGSQFTLRIPLYGAQYP 696 >gi|332159934|ref|YP_004296511.1| Multi-sensor hybrid histidine kinase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664164|gb|ADZ40808.1| Multi-sensor hybrid histidine kinase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 926 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/259 (32%), Positives = 137/259 (52%), Gaps = 13/259 (5%) Query: 559 HDISEWKQEKNKLSHAK-KIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 +D E K ++ L+ AK K+A ++++H KS L +SHEIRTPL +G E+++N Sbjct: 370 YDTLEMKVKERTLALAKSKLAAEQANHRKSIHLTTISHEIRTPLNGALGAVELLQNT--- 426 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL P + A + + +L I+N+LLD S+IESG++ L E +L + +A+ + Sbjct: 427 PLA-PEQYQLAETARQCSHSLLAIINNLLDFSRIESGQLTLSQEKTALLPLLDQAMLTIH 485 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K I + T ++++P I D + +KQI +N+L NA+ FT G I T + Sbjct: 486 SQVLNKPIALSTYVSSDVPLEIELDSQRIKQILVNLLGNAVKFTRQGH--ISLTVERKGQ 543 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++ V DTG G+ + EK +PF Q + +Q GTGLGL +A + G ++ Sbjct: 544 QLCFTVEDTGCGIDSQHQEKIFRPFIQTYDHRQ----GTGLGLTIADNLAKMMGGNITLY 599 Query: 796 STPAKGTLIEIIFPLYDTS 814 S P G+ + P T+ Sbjct: 600 SKPNCGSHFSLTLPFRGTT 618 >gi|320104791|ref|YP_004180382.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] gi|319752073|gb|ADV63833.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] Length = 973 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/258 (29%), Positives = 136/258 (52%), Gaps = 6/258 (2%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y D++E + + ++ A+ A+ + KS+FLA +SHEIRTP+T+I+G ++++ Sbjct: 356 YVGIADDVTEQVRYQEEIRRARDRADAANRAKSEFLASMSHEIRTPMTSILGHADILNLP 415 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 P R E I +G +L I+ND+LD++KIE+GK+ + P E ++ Sbjct: 416 DLTP---QRLAEARGAIQAAGRHLLRIINDILDLAKIEAGKLPMEILPCDPWTLAREVVA 472 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +++ A + + + A +P+ I D ++Q+ N++ NAI FT GG +I + Sbjct: 473 GLRINATRRELALTLEAAGPLPKQIQTDPNRLRQVLYNLVGNAIKFTEKGGVRLIVSFDP 532 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 S + V DTGVGMT ++ K PF Q + GTGLGL ++K + + G Sbjct: 533 SACRLSFDVIDTGVGMTPEQVGKLFTPFYQAERTHN--AGGTGLGLVISKRLAERLGGTI 590 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S +G++ ++ P+ Sbjct: 591 KVQSQRGRGSVFSVLIPV 608 Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust. Identities = 16/54 (29%), Positives = 35/54 (64%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 KR +E+E +++ ILE +++ I ++ G I+S N + +++FGY +++ + F Sbjct: 107 KRALEVERVKVNQILERSAEAIVSLDSAGRIVSINPSAARMFGYSASEVVGESF 160 >gi|317049304|ref|YP_004116952.1| multi-sensor hybrid histidine kinase [Pantoea sp. At-9b] gi|316950921|gb|ADU70396.1| multi-sensor hybrid histidine kinase [Pantoea sp. At-9b] Length = 908 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 132/237 (55%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + + G N R +Y + Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTR--QMLKTGLSTNQR--DYMST 333 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS +L I+ND+LD SK+E+GK+ L P L + E + L+ A+EK + + Sbjct: 334 IERSAANLLSIINDVLDFSKLEAGKLVLESIPFPLRATLDETLVLLAPSAHEKGLEMTVC 393 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTG 745 +P ++ D ++QI +N++ NAI FT G ++ + T+ + + ++V DTG Sbjct: 394 LEKQVPDNVIGDPLRLQQILINLIGNAIKFTEQGHIDLRVELRNTNATRVALEIQVHDTG 453 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+++ + + + F Q S R GTGLGL + + +V G+ S +G+ Sbjct: 454 IGISDQQQTQLFQAFRQADASISRRHGGTGLGLVITQKLVHEMGGEIAFHSRQGEGS 510 >gi|160936693|ref|ZP_02084060.1| hypothetical protein CLOBOL_01584 [Clostridium bolteae ATCC BAA-613] gi|158440484|gb|EDP18229.1| hypothetical protein CLOBOL_01584 [Clostridium bolteae ATCC BAA-613] Length = 1071 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/266 (30%), Positives = 144/266 (54%), Gaps = 20/266 (7%) Query: 560 DISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 DI+E ++ + KL A + A+ ++ KSDFL+R+SH+IRTP+ I G +E+ Sbjct: 521 DITELRELQRKLEERTDMLNSALEAAKYANAAKSDFLSRMSHDIRTPMNVITGMAEIAAA 580 Query: 613 QRFGPLGNP-RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 +G+ R + I S + +L ++ND+LD+SKIE+G ++ P+ L + + E Sbjct: 581 H----IGDQDRVKDCLQKIRLSSHHLLGLINDVLDMSKIENGNFSISMAPMCLPDELQEI 636 Query: 672 ISLV--QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII--- 726 I++V + +R + ++D +QI LN+LSNA FTP G+II Sbjct: 637 ITIVLPGIRKMNQRFDVYLE-GPGWENFMSDALRFRQILLNLLSNASKFTPKDGRIILKI 695 Query: 727 -ISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 I T ++ + +I V D G+GM+ LE+ +PF + +S+ + EG+GLG+ + K + Sbjct: 696 EIQETESAKKAMICFTVSDNGIGMSPEYLEQIFEPFTRERDSRIDQIEGSGLGMAITKRL 755 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810 +D G + S GT+ +++ P+ Sbjct: 756 IDLLGGTITVKSQLGVGTVFDVLMPM 781 >gi|326624090|gb|EGE30435.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 948 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/261 (31%), Positives = 132/261 (50%), Gaps = 7/261 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 442 VLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 500 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 501 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 557 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT G I+ + Sbjct: 558 PLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG--CIVLHVRCDGD 615 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 616 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 675 Query: 796 STPAKGTLIEIIFPLYDTSHP 816 S P G+ + PLY +P Sbjct: 676 SEPGMGSQFTLRIPLYGAQYP 696 >gi|225681940|gb|EEH20224.1| ethylene receptor [Paracoccidioides brasiliensis Pb03] Length = 2254 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 85/278 (30%), Positives = 141/278 (50%), Gaps = 31/278 (11%) Query: 567 EKNKLSHAK------KIAEKESSH-----------KSDFLARVSHEIRTPLTAIIGFSEV 609 +K L+HA+ K+AE E+ H KS FLA VSH++RTP+ +IG +E+ Sbjct: 1708 QKRALAHAREAERKSKVAEAEAKHNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLTEL 1767 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 +K N Y + I + +L ++ND+LD SK+E+GKM + P++L + + Sbjct: 1768 LKKTSLDREQNG----YVDSIRVCADTLLTLINDILDFSKLEAGKMKVTAIPLNLRDTIL 1823 Query: 670 EAISLVQLYANEKRILIRTSFANNI-PRIL--ADLRSVKQIALNILSNAIHFTPSGGQII 726 EA+ + Y + R L + + P +L D + QI +N+LSN+ FTP G + Sbjct: 1824 EAVRAL-CYTHRHRGLQTIEDLDELDPNLLVMGDPVRLHQIFMNLLSNSYKFTPQGSVTV 1882 Query: 727 ISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + + + + +V DTG+G+ +L + +PF Q +S G+GLGL + KA Sbjct: 1883 NAKSSVEEDGRIRITCKVVDTGIGIPGEQLVRLFRPFSQADSSSARSFGGSGLGLSICKA 1942 Query: 784 MV-DANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 ++ D GK ++ S GT + F L + P D + Sbjct: 1943 IIEDVLGGKIWLQSEEGVGT--TVTFSLVFSKAPKDAV 1978 >gi|218887769|ref|YP_002437090.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758723|gb|ACL09622.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1358 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/278 (27%), Positives = 144/278 (51%), Gaps = 24/278 (8%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 +++ Y + DI+E K + +L +A+++AE + KS FLA +SHE+RTP+ ++G ++ Sbjct: 923 YANIYGM---DITERKNAELELINAREVAETATKAKSAFLANMSHELRTPMNGVLGMLQL 979 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + PL +P Y +G+ + ++ DLLD++++ESG++ + EP + Sbjct: 980 LDAT---PL-DPEQRGYVQVAHAAGSNLTRLLGDLLDLARVESGRLTIREEPFDFNGLTQ 1035 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT---------- 719 E +++++ A+ K I++ + +L D + ++Q+ LNI+ NA+ FT Sbjct: 1036 EVLAVLRPEADRKGIVLEAATDGMPGALLGDPQRIRQMLLNIVGNAVKFTDRGHVRLLAR 1095 Query: 720 --PSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 PS G + E + L V DTG+G+ + L +PF Q+ ++ R Sbjct: 1096 FEPSAGPSATAEPGGQGEPGGQGTLYLAVEDTGIGIPSDMLGNIFEPFTQVEDAVSRRHG 1155 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 G GLGL + + +VD G+ + S +GT + + P+ Sbjct: 1156 GAGLGLSIVRRIVDLMEGEVSMTSEEGRGTTVTLRLPV 1193 Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 8/120 (6%) Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 R+ L+ V+D+LD+S++++G M L + A ++ + + Sbjct: 239 RNARLLHQHVDDMLDLSRVDAGAMQPRHAEADLSALTRTTCAYFDTLAAQRGM----HYG 294 Query: 692 NNIPRIL---ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 P L D ++I LN+LSN+ FTP GG + + T +E +L V D G G+ Sbjct: 295 VQAPLRLDAQVDTDKYRRILLNLLSNSFKFTPDGGSVSV-TLERQGDEALLSVSDDGPGV 353 >gi|218670543|ref|ZP_03520214.1| multi-sensor signal transduction histidine kinase [Rhizobium etli GR56] Length = 186 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 66/185 (35%), Positives = 109/185 (58%), Gaps = 2/185 (1%) Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EYA I SG +L+++ND+LD+SKIE+G + LH E + L + E++ + A EK I Sbjct: 1 EYARDIHDSGKHLLNVINDILDMSKIEAGHLRLHCERIDLVPLIEESLRFTAIPAAEKNI 60 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 +I ++ + + AD R++KQ+ LN+LSNA+ FT +GG+I + T V + + DT Sbjct: 61 VIDQRISSGLT-LTADRRAMKQVLLNLLSNAVKFTDNGGRIAVRTRRVDG-AVTVTIADT 118 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ L K +PF Q+ + G+GLGL +++++ + G+ I S A GT+I Sbjct: 119 GIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTALHGGRMKIRSREAVGTVI 178 Query: 805 EIIFP 809 + P Sbjct: 179 SLRIP 183 >gi|198244777|ref|YP_002216340.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197939293|gb|ACH76626.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 915 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 131/258 (50%), Gaps = 7/258 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 412 DVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 470 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 471 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 527 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT G I+ + + Sbjct: 528 VRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG--CIVLHVRCDGDYLS 585 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 586 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 645 Query: 799 AKGTLIEIIFPLYDTSHP 816 G+ + PLY +P Sbjct: 646 GMGSQFTLRIPLYGAQYP 663 >gi|119486187|ref|ZP_01620247.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119456678|gb|EAW37807.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1955 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/248 (31%), Positives = 138/248 (55%), Gaps = 9/248 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS+ KQ + +L AK++AE S K F+A +SHE+R+PL AI+GFS ++KN L Sbjct: 1471 DISDRKQIELELQKAKEVAEAASEAKGAFIANMSHELRSPLNAILGFSRLLKNNSQISLD 1530 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + A I RSG +L+++N +LD++KIE+ ++ + ++LD+ + + ++ L A Sbjct: 1531 ERK---NAEIIYRSGEHLLNLINQVLDLAKIEANRITVEPTDLNLDQLIDDIYNMFYLKA 1587 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNE 735 E+ + +++P I D ++Q+ +N+LSNA+ FT G I + + + N Sbjct: 1588 QEQGLNFNVQKTSDVPCSICTDEIKLRQVFINLLSNALKFTKRGFITLNISVKSKKSDNN 1647 Query: 736 EVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 ++ V DTGVG+ E + F Q +Q++ EGTGLGL +++ + G+ + Sbjct: 1648 VMLNFEVEDTGVGIAPEEQTDIFEAFNQSQAGKQVK-EGTGLGLAISREFIKLMGGEISV 1706 Query: 795 FSTPAKGT 802 S G+ Sbjct: 1707 ESQVNIGS 1714 >gi|83814809|ref|YP_446154.1| putative two-component system sensory/regulatory protein, putative [Salinibacter ruber DSM 13855] gi|294508078|ref|YP_003572136.1| two-component sensor histidine kinase [Salinibacter ruber M8] gi|83756203|gb|ABC44316.1| putative two-component system sensory/regulatory protein, putative [Salinibacter ruber DSM 13855] gi|294344406|emb|CBH25184.1| two-component sensor histidine kinase [Salinibacter ruber M8] Length = 942 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/254 (32%), Positives = 131/254 (51%), Gaps = 9/254 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR---F 615 DI+E K + L AK+ AE+ S KS LA +SHE+RTPLT+I+GF+E I ++ Sbjct: 681 RDITELKWREETLRAAKEEAEEASRLKSAVLANMSHELRTPLTSILGFAEAIDDEASDGA 740 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GP+ +A+ I +SG +L +++L++S++E+ + N EPV + A + Sbjct: 741 GPVSR-----FASLIAKSGERLLRTFDNILNLSRLEAEQQNEPAEPVDVAAAARSVADEI 795 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 Q A I +RT + R A V + ++LSNAI +T +GG + + Sbjct: 796 QDRAEADDIALRTEVGSATMRTRAPADQVPIVLRHLLSNAITYTEAGGTVWLRVGRAGG- 854 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +V++ V DTG+GM E+ +PF Q EGTGLGL + + VD G + Sbjct: 855 DVVVEVEDTGIGMDPDEVPALFEPFRQASEGFGREYEGTGLGLAVVQRAVDRMGGTVDVA 914 Query: 796 STPAKGTLIEIIFP 809 + +GT + + P Sbjct: 915 TEEGEGTCVTVGLP 928 >gi|62180844|ref|YP_217261.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194444742|ref|YP_002041532.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|224583244|ref|YP_002637042.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62128477|gb|AAX66180.1| sensory histidine kinase in two-component regulatory system with RcsB, regulates colanic capsule biosynthesis [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194403405|gb|ACF63627.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|224467771|gb|ACN45601.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322715320|gb|EFZ06891.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 948 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 131/258 (50%), Gaps = 7/258 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VERLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG--CIVLHVRCDGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHP 816 G+ + PLY +P Sbjct: 679 GMGSQFTLRIPLYGAQYP 696 >gi|186682103|ref|YP_001865299.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186464555|gb|ACC80356.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1559 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 132/241 (54%), Gaps = 8/241 (3%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q++ +L A+ AE S KS FLA +SHEIRTP+ A++G + ++ PL N + Sbjct: 877 QQRRELEVARHQAELASKTKSAFLANMSHEIRTPMNAVLGMTGLMLE---TPL-NSEQQD 932 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + I SG+ +L ++N++LD+SK+E+G+M L L + E + L+ A+ K + Sbjct: 933 FIETIRISGDALLSLINEILDLSKLEAGEMALETLDFDLSTCLEEVLELLAPSAHNKGLE 992 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRV 741 I N+P ++ D ++QI +N++SNAI FT +G ++ + + ++ + + Sbjct: 993 IAALIYPNVPTQLQGDAGRLRQILMNLISNAIKFTSNGEVVVRAELRSLSSTTATIYFAI 1052 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+T + + PF Q+ S + GTGLGL + K +V G+ + S KG Sbjct: 1053 TDTGLGITFEDQCRLFTPFTQVDASNTRKYGGTGLGLAICKQLVSLMGGEIGVESRLGKG 1112 Query: 802 T 802 + Sbjct: 1113 S 1113 >gi|320086707|emb|CBY96478.1| two component sensor kinase/response regulator protein RcsC [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 915 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 131/258 (50%), Gaps = 7/258 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 412 DVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 470 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 471 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 527 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT G I+ + + Sbjct: 528 VRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG--CIVLHVRCDGDYLS 585 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 586 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 645 Query: 799 AKGTLIEIIFPLYDTSHP 816 G+ + PLY +P Sbjct: 646 GMGSQFTLRIPLYGAQYP 663 >gi|282895906|ref|ZP_06303946.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] gi|281199151|gb|EFA74020.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] Length = 428 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 123/228 (53%), Gaps = 2/228 (0%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S KS FL+ +SHE+RTP+ AIIGF++++ +F L + + ++ + NL + ++ Sbjct: 170 SRLKSQFLSTISHELRTPMNAIIGFAQILLRPKFSQLSSVQTDILKRILNNAKNLSM-LL 228 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 N++LD SKI+SG++ L E L + V+ A+S ++ K++ + + D Sbjct: 229 NEVLDFSKIDSGRLALKPEIFDLSKVVNHAVSEIRSLVEAKKLSLSVEIELENTLVFNDP 288 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 V QI +N+LSNAI FT G I + T S + + +RDTG+G+++ + E + F Sbjct: 289 MRVSQILINLLSNAIKFTERGC-IWVRVTEPSKNRIAISIRDTGIGISSQDCEHIFEAFR 347 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q+ + G GLGL + ++V GK + S A G+L + P Sbjct: 348 QVDQGISRKYPGMGLGLAIIDSLVKIMGGKIILESQLAVGSLFGVELP 395 >gi|266619626|ref|ZP_06112561.1| PAS domain protein [Clostridium hathewayi DSM 13479] gi|288868811|gb|EFD01110.1| PAS domain protein [Clostridium hathewayi DSM 13479] Length = 854 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/265 (31%), Positives = 141/265 (53%), Gaps = 15/265 (5%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 EW+Q +N L A A + KS+FL+ +SH+IRTP+ AI+G + + + P + Sbjct: 453 EWEQREN-LEQALMAANSANIAKSNFLSNMSHDIRTPMNAILGMAAIAEQYAGDP---EK 508 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 I I S +L +++++LD+S+IESGKM L + SL + +S+ Q K Sbjct: 509 VINCMKKISYSSRHLLALIDEILDMSRIESGKMLLENKIFSLSGMLEGIVSMFQEQFKGK 568 Query: 683 RI---LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEEVI 738 ++ + + S ++ ++ D + +I +NILSNAI +TP GQI+ S T + +E Sbjct: 569 KLSFNMEKRSIKHD--SLIGDEFRLSRILVNILSNAIKYTPEQGQIVFSVTELQAGKEGY 626 Query: 739 LR----VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 R ++D G GMT L+ PF ++ + +GTGLG+ +AK+M+D G + Sbjct: 627 ARYQFVIKDDGRGMTEEFLKTIFMPFTRMEEKEGSYTQGTGLGMAIAKSMLDLMGGSINV 686 Query: 795 FSTPAKGTLIEIIFPLYDTSHPHDC 819 ST KG+ + L +T+ +C Sbjct: 687 ESTLGKGSTFTVDVEL-ETAEEGEC 710 >gi|168701075|ref|ZP_02733352.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 1034 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 97/360 (26%), Positives = 174/360 (48%), Gaps = 26/360 (7%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 E + GIA + EG L N+ + YP E+++ F + + ++ Sbjct: 266 FENAAVGIAHCDPEGRFLRVNQKHCDILRYPREELIGLDFRAVTHPDDRTGSGTQFERLM 325 Query: 518 SLDLRQ-TLEKITLGSTKEEKLLSLRIIIKKLPF-SSCYSL-TMHDISEWKQEKNKLSHA 574 ++R +LEK + K + + ++ P + +S+ + DISE K+ + +L A Sbjct: 326 RGEVRSYSLEKRHVCKDGAVKWTVVTVSAQRDPVQGTLHSIGVVEDISERKRLEGELLVA 385 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI------KNQRFGPLGNPRYIEYAN 628 K+ AE + K +FLA VSHE+RTP+ AI+G +E++ ++QR + Sbjct: 386 KEAAEAANRAKDEFLANVSHELRTPMNAILGMTELVLETELREDQR----------QCLA 435 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + + + +L I+NDLLD +KIE+GK+ L SL V + + + A+ + + Sbjct: 436 TVKSAADNLLGILNDLLDFAKIEAGKLELDPTEFSLRAVVGDTLRALAARAHRAGLELVG 495 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST-----THTSNEEVILRVR 742 +P ++ D ++Q+ N++ NAI FTP+ G++++ + V VR Sbjct: 496 DVHPAVPDALVGDPGRLRQVLFNLIGNAIKFTPA-GEVVVGVEPADPSDIGGSAVRFTVR 554 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ +L++ F Q S R GTGLGL ++ +V G + S P +G+ Sbjct: 555 DTGIGIKPEKLDRIFHAFEQEDTSTTRRYGGTGLGLTISGRLVALMGGAIGVESEPGRGS 614 >gi|197265671|ref|ZP_03165745.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|207857690|ref|YP_002244341.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238913908|ref|ZP_04657745.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|197243926|gb|EDY26546.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|206709493|emb|CAR33837.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 948 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 131/258 (50%), Gaps = 7/258 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG--CIVLHVRCDGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHP 816 G+ + PLY +P Sbjct: 679 GMGSQFTLRIPLYGAQYP 696 >gi|325105301|ref|YP_004274955.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] gi|324974149|gb|ADY53133.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] Length = 1198 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 134/238 (56%), Gaps = 5/238 (2%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + +KS+FLA +SHE+RTPL +I+ S ++ L N IE AN I SG +L+++ Sbjct: 523 TKYKSEFLANMSHELRTPLNSILLLSRLMAENTEHNL-NEEQIESANVIQSSGASLLELI 581 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700 +++LD+SKIE+GKM L F+ + + VS +L EK + ++ +I+ D Sbjct: 582 DEILDLSKIEAGKMKLEFQKIEISGIVSALKALFLPIIKEKNLDFDIKIGADVGQIIETD 641 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 V+Q+ N++SNAI FT S G I + + +N ++ V+DTG+G+ + + + F Sbjct: 642 KMRVEQVMKNLMSNAIKFT-SRGSIGLQISRENN-NILFAVKDTGIGIPAEQQKIIFEAF 699 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL-YDTSHPH 817 Q S + + GTGLGL +++ + G+ + S ++G++ ++ P+ D S+ H Sbjct: 700 QQADGSTRRKFGGTGLGLSISREIAKLLGGEIRLLSKESEGSIFTLVVPISRDESNVH 757 >gi|309776880|ref|ZP_07671850.1| sensor histidine kinase/response regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308915291|gb|EFP61061.1| sensor histidine kinase/response regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 658 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 128/246 (52%), Gaps = 11/246 (4%) Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 KIA KS FLA +SHEIRTPL IIG +++ P Y+E AN S Sbjct: 274 KIASASEKAKSAFLANMSHEIRTPLNGIIGLQYLMQQNIEHPDKLKEYLEKANV---SSQ 330 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE-KRILIRTSFANNI 694 + ++ D+L++SKIESG++ L+ +P +L + + E ++ + A E K+ + + Sbjct: 331 YLKSVITDVLEMSKIESGQLELYQKPFNLLDMIQEIHMIIGVQAEEHKQQFTLDTTQIHS 390 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL----RVRDTGVGMTN 750 +LAD +KQ+ +N+L NA+ FTP GQI + ++ I+ + DTG GM++ Sbjct: 391 TALLADEVRIKQVLINLLGNALKFTPEKGQISLQVEQQPEKDGIVPTKFVITDTGCGMSD 450 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 L++ PF Q + GTGLG L+K +V+ G + S KGT I P Sbjct: 451 EFLQRIWNPFEQ--EHRMASQNGTGLGTTLSKILVEKMDGSIQVESELGKGTCFTIQLPF 508 Query: 811 Y-DTSH 815 + D +H Sbjct: 509 HVDDTH 514 >gi|298384668|ref|ZP_06994228.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 1_1_14] gi|298262947|gb|EFI05811.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 1_1_14] Length = 1420 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 134/253 (52%), Gaps = 12/253 (4%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 ++K +L + ++ + K F ++HE RTP+T IIG E + NP+ IE Sbjct: 884 RQKAQLIRMSRKVQELTLDKISFFTNITHEFRTPITLIIGPIERALKLSY----NPQVIE 939 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 N+++R+ +L +VN L+D K+ESGK+ + + + + I+ +++A E+ I+ Sbjct: 940 QLNFVERNSKYLLSLVNQLMDFRKVESGKLEIVKTRGNFLKFIDSLITPFEVFAQERNIV 999 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-----IISTTHTSNEEVILR 740 ++ + +P IL D +++++ N+LSNAI FTP+GG + + + E + + Sbjct: 1000 LKRYYRMEMPEILYDEEAMRKVVTNLLSNAIKFTPNGGTVSLYLSALFAKDSEKETLYIC 1059 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQ--IRGE-GTGLGLPLAKAMVDANMGKFYIFST 797 V+D+G G+ +L + F Q N + + G+ GTG+GL L K +V + G+ F+ Sbjct: 1060 VKDSGSGIPEEDLNRIFNRFYQSQNQVKYPVYGQAGTGIGLYLCKRIVQMHGGEIKAFNN 1119 Query: 798 PAKGTLIEIIFPL 810 G I+ PL Sbjct: 1120 RHAGCSFRILLPL 1132 >gi|294140100|ref|YP_003556078.1| sensory box histidine kinase/response regulator [Shewanella violacea DSS12] gi|293326569|dbj|BAJ01300.1| sensory box histidine kinase/response regulator [Shewanella violacea DSS12] Length = 1486 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 134/504 (26%), Positives = 215/504 (42%), Gaps = 47/504 (9%) Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 +D+ I G + YAN F ++ YK VDD+ G +L N+ P Sbjct: 442 ALDQHAIVAVTDLKGTITYANDKFSEISGYK-VDDL--IGQNHRIL-------NSGFHPS 491 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE-KANQFPENMPQNGIEPEDVDTRIN 443 + ++ H NR + ++ A + N+P++ I + I Sbjct: 492 EFFSEMYRTVSKGKVWHGEICNRNKRGEIYWVDTTIMALKDTRNLPKSYIA---IRADIT 548 Query: 444 KRK-MEIEVMQLCSI----LEATSDGIAIINREGIILSTNRAVSKLFGYPVE-------- 490 +RK EI V + S+ LE+T +GI + + +G IL TN S L+G E Sbjct: 549 ERKRTEIAVKEALSLMNATLESTDNGILVTSIDGEILRTNCQFSHLWGVAKELLDKGVND 608 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 ++ K V L++ P + EI + + I L + + S + + F Sbjct: 609 RVILKQIKVLLKK--PETFLKRVEEIYEDRELEAFDTIALIDGRVFERASSPMEVDGEYF 666 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 +S DI+E + +N L AK+ AE + KS+FLA +SHEIRTP+ +IG Sbjct: 667 GRVWSF--RDITERTENQNALLQAKEEAELATKAKSEFLASMSHEIRTPMNGVIGM---- 720 Query: 611 KNQRFGPLGNPRYIEYAN----YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 G L N + EY N S +L ++ND+LD SKI++GK+ L +L Sbjct: 721 ----LGLLSNSKLTEYQNRRVSIAQSSAQSLLSLINDILDYSKIDAGKLELEQIDFNLRG 776 Query: 667 AVSE-AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + + A + N+K LI + D ++Q N+ NAI FT G + Sbjct: 777 MLGDFAEGIAHQAQNKKLELILDLKGVEQSMVTGDPGRLRQAITNLTGNAIKFTKQGEVV 836 Query: 726 I---ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 + + H +I V DTG+G+ +++ K F Q+ S + GTGLGL + K Sbjct: 837 VRAELKPAHEGKWWLICSVSDTGIGIPADKIDGLFKSFSQVDASTTRKYGGTGLGLAIVK 896 Query: 783 AMVDANMGKFYIFSTPAKGTLIEI 806 + G + S G+ EI Sbjct: 897 KISRLMGGDVSVSSVYGIGSCFEI 920 >gi|149278863|ref|ZP_01884998.1| sensory box histidine kinase/response regulator [Pedobacter sp. BAL39] gi|149230482|gb|EDM35866.1| sensory box histidine kinase/response regulator [Pedobacter sp. BAL39] Length = 526 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 81/263 (30%), Positives = 134/263 (50%), Gaps = 12/263 (4%) Query: 548 LPFSSCYSLTMHDISE----WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 L +S +LT + E KQ + +L+ ++ E K FL +SHEIRTP+ + Sbjct: 101 LGLASSLNLTSERLRESCRKLKQAETRLAKQRRKTEALKKAKQTFLVNISHEIRTPMNGV 160 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 +GF+ +++ G + + + E I +S + ++ I+ND+LD S +E G + H +P Sbjct: 161 LGFARLLE----GSIKDTDHQESLRLIIKSADQLMTILNDILDFSNLEEGNVKFHKQPFY 216 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSG 722 L +AV L+ K + + + +P +++ D + QI LN+ SNA+ FT SG Sbjct: 217 LKDAVDGHFKLMASEFKSKGLGFKYHLSEYVPDVISGDELRLGQILLNLTSNALKFTDSG 276 Query: 723 G-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 I IS + EEV L VRDTG+G+ + ++ F Q N R GTGLGL Sbjct: 277 NVGIDISVVEETAEEVTLEFCVRDTGIGIALEKQQQIFDFFEQASNDASRRYAGTGLGLS 336 Query: 780 LAKAMVDANMGKFYIFSTPAKGT 802 + K +V G+ ++ S +G+ Sbjct: 337 IVKKLVSLQGGEVFLESKLGRGS 359 >gi|255589130|ref|XP_002534846.1| two-component sensor protein histidine protein kinase, putative [Ricinus communis] gi|223524480|gb|EEF27535.1| two-component sensor protein histidine protein kinase, putative [Ricinus communis] Length = 534 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 81/271 (29%), Positives = 128/271 (47%), Gaps = 31/271 (11%) Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG----------FSEVIKNQ 613 ++ + +L AK+ AE + KS+FLA +SHE+RTPL +IG E + Q Sbjct: 48 LQENEERLYQAKQRAEDATRQKSEFLANMSHEMRTPLAGVIGMLGFALRDTGLKESTREQ 107 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 N + + L I+NDLLD SKIE+GK+ + +LDEA+S + Sbjct: 108 ILRGQANAQSL-------------LAIINDLLDFSKIEAGKLTIENIDFALDEAISHVAT 154 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-----I 727 L + A + ++PR ++ D ++QI +N++ NA FT SG + Sbjct: 155 LFEEQAGAHSVGFAVQLDPDLPRFVVGDPTRLRQILVNLVGNAFKFTESGSVTVHVERRA 214 Query: 728 STTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 H ++R V+DTG+G+ L + + F Q + R GTGLGL + + +V Sbjct: 215 EDQHDRAGRNMIRFSVQDTGIGIAPDALPRLFQKFEQADATTTRRYGGTGLGLAICRQLV 274 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + G + STP G+ + PL D P Sbjct: 275 ELMGGTIGVASTPGVGSTFSFVLPLADGVQP 305 >gi|170690462|ref|ZP_02881629.1| multi-sensor hybrid histidine kinase [Burkholderia graminis C4D1M] gi|170144897|gb|EDT13058.1| multi-sensor hybrid histidine kinase [Burkholderia graminis C4D1M] Length = 1202 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 132/233 (56%), Gaps = 3/233 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ S +KS+FLA +SHE+RTPL + + +++++ R G L + YA I S + +L Sbjct: 483 EQSSRYKSEFLANMSHELRTPLNSSLILAKLLQQNRTGNL-TEEQVRYAETIHASNSDLL 541 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RI 697 ++ND+LD+SK+E+G++N+ E VS+D + L + A K + + +P + Sbjct: 542 VLINDILDLSKVEAGQVNVELETVSIDATLQSLEELFKPLAGAKHLSLVFDRLPGVPDTM 601 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 ++D + V QI N+LSNA+ FT + G++ +S ++ + + VRD+G+G+ +LE Sbjct: 602 VSDGQRVTQILRNLLSNAVKFT-AHGEVALSVAPADDDMLRIDVRDSGIGIPADKLEMIF 660 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F Q S + G+GLGL +++ G+ + S KG++ + PL Sbjct: 661 EAFQQADGSTSRQYGGSGLGLSISREFARLLGGRITVASEVGKGSVFTLWLPL 713 >gi|73538868|ref|YP_299235.1| PAS [Ralstonia eutropha JMP134] gi|72122205|gb|AAZ64391.1| PAS [Ralstonia eutropha JMP134] Length = 855 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 91/364 (25%), Positives = 167/364 (45%), Gaps = 11/364 (3%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +LE + D I + +G N A + + G+ +++L +PF F+ + + Sbjct: 105 LLELSLDLICEASGDGYFTRVNPAFTSVLGWRADELLARPFLDFVAPEDRARTQELVRSH 164 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576 + + + + L + LS R +++ + Y+ T D+++ + + ++ A++ Sbjct: 165 VKGNPIEDFQNRYLCKDGAVRWLSWRAVLRD--DGTLYA-TARDVTQSRIAQLEIERARQ 221 Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 AE S KS FLA +SHEIRTP+ +IG EV+ + R E + S Sbjct: 222 EAEAASRAKSAFLAMISHEIRTPMNGVIGMIEVLTRTTLS--ADQR--EMVATVRESAAA 277 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP- 695 +L+I++D+LD SKIE+ KM + P+S++ V + + L A + + +P Sbjct: 278 LLNIIDDILDFSKIEADKMRIECVPLSIEHTVETLCASLVLLAERNNVALYLDIDPGLPA 337 Query: 696 RILADLRSVKQIALNILSNAIHFTPS---GGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 ++L D ++Q+ N++ NAI F+ GG++ + + V + D G+GM Sbjct: 338 QVLGDDLRLRQVLYNLVGNAIKFSGGALPGGRVYLRIAPAGGDVVRFEIEDNGIGMPPDA 397 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 + +PF Q + R GTGLGL + + + + G S P G + PL Sbjct: 398 MATLFQPFVQAETTTTRRFGGTGLGLAICRRLTELMGGSIAAASQPGAGATFTVCLPLRA 457 Query: 813 TSHP 816 P Sbjct: 458 AEAP 461 >gi|323486665|ref|ZP_08091986.1| hypothetical protein HMPREF9474_03737 [Clostridium symbiosum WAL-14163] gi|323400046|gb|EGA92423.1| hypothetical protein HMPREF9474_03737 [Clostridium symbiosum WAL-14163] Length = 1207 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/248 (33%), Positives = 130/248 (52%), Gaps = 18/248 (7%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +++K +L+ A AE+ ++ KSDFL+R+SHEIRTP+ AIIG + + LGN + Sbjct: 658 QRQKEELASALIAAEQANAAKSDFLSRMSHEIRTPMNAIIGMTAIAAQ----ALGNDEQV 713 Query: 625 -EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + + I S +L ++ND+LD+S+IESGKM L + + +E ++ S+ A K Sbjct: 714 ADCISKIGISSRFLLSLINDILDMSRIESGKMLLKNDKIPTEEFLNGINSICYSQAAVKD 773 Query: 684 ILIRTSFANNIPRIL-----ADLRSVKQIALNILSNAIHFTPSGGQIIISTT---HTSNE 735 + + + +L D ++Q+ +NIL NAI FT GG++ S N+ Sbjct: 774 V----EYECIVDPVLDDYYIGDAMKLQQVLINILGNAIKFTREGGKVTFSAAVKRKMKND 829 Query: 736 EVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 VI + DTG+GM L PF Q GTGLGL ++K++VD GK + Sbjct: 830 AVIRFVINDTGIGMDEDYLPHIFDPFSQESTGTTSLYGGTGLGLAISKSIVDLMDGKITV 889 Query: 795 FSTPAKGT 802 S GT Sbjct: 890 RSIKGLGT 897 >gi|126656663|ref|ZP_01727877.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110] gi|126621883|gb|EAZ92591.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110] Length = 820 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 83/273 (30%), Positives = 142/273 (52%), Gaps = 13/273 (4%) Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRT 598 ++L F + D+ E +Q + H A+K AE+ + K +FLA +SHE+R+ Sbjct: 412 RELRFLDLLARQATDLIEQRQAFAEHQHLLEREQAARKEAEQANRIKDEFLAMLSHELRS 471 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PL I+G+S +++ ++F + + + I+R+ L +++DLLDI++I GK+ L Sbjct: 472 PLNPILGWSTLLQTKKFDSATTQKGL---STIERNAKLQTQLIDDLLDIARILRGKLKLK 528 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 V+L + E I +V+ A K I +R + ++ ++ D ++Q+ N+LSNA+ F Sbjct: 529 ETTVNLVTVIEEGIEVVRRAAEAKSIALRFNLIDSC-QVRGDEGRLEQVLWNLLSNAVKF 587 Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 TP GGQ+I+ +++ + V DTG G+ L + F Q S G GLGL Sbjct: 588 TPEGGQVIVQ-LEVLHDQACITVVDTGKGIKPEFLPDLFQTFCQEDISITRNYGGLGLGL 646 Query: 779 PLAKAMVDANMGKFYIFST-PAKGTLIEIIFPL 810 + K +VDA+ G S +G + FPL Sbjct: 647 AIVKYLVDAHGGSITAESAGEGQGATFTVQFPL 679 >gi|189425048|ref|YP_001952225.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189421307|gb|ACD95705.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1195 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 136/261 (52%), Gaps = 8/261 (3%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + + + DI+E K + +L K AE + KS+FLA +SHEIRTP+ AI+G + ++ Sbjct: 556 FFVLVSDITELKLTQLQLEQRTKEAEAANRAKSEFLANMSHEIRTPMNAILGLTRLVLET 615 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 +PR ++ + + +++I+ND+LD SKIE+G++ + P+S++E V + Sbjct: 616 EL----DPRQRDFLLKVYNASQALMEILNDILDYSKIEAGRVEIEQLPISVEEVVRNTMG 671 Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH 731 L + EK + A+++P +L D + Q+ N++ NA+ FT SG +I++ Sbjct: 672 LFRAKIEEKGLATIMELASSLPAVLQGDPMRLSQVLNNLVGNAVKFTESGEIRIMVEQIQ 731 Query: 732 TSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 V L V+DTG+G+ E + + F Q ++ + GTGLGL + + +V Sbjct: 732 EDCRTVTLCFSVQDTGIGLDKDETARLFQAFTQADSTISRKYGGTGLGLTICQRLVGLMG 791 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G + S G+ + + Sbjct: 792 GSISVSSLKGVGSTFSFVIQM 812 >gi|225560357|gb|EEH08639.1| histidine kinase [Ajellomyces capsulatus G186AR] Length = 2322 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 132/255 (51%), Gaps = 14/255 (5%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H K+ E + KS FLA VSH++RTP+ +IG SE++K + Y I Sbjct: 1796 HNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLSELLKKTNL----DREQDGYVESIRV 1851 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 + +L ++ND+LD SK+E+GKM + P++L E ++E + ++ Y + R L + Sbjct: 1852 CADTLLTLINDILDFSKLEAGKMKVSTVPLNLRETIAEVVRALR-YTHRDRGLQTIEDLD 1910 Query: 693 NIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGV 746 + +L D + QI +N+LSN+ FTP G + + ++ + +V DTG+ Sbjct: 1911 GVDPNLLVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVKAKAADEDDGRIRITCKVADTGI 1970 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLIE 805 G++ +L + +PF Q +S G+GLGL + KA++ D GK ++ S GT Sbjct: 1971 GISGEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEEGVGT--T 2028 Query: 806 IIFPLYDTSHPHDCI 820 + F L + P + + Sbjct: 2029 VTFTLVLSKAPKNAV 2043 >gi|56412832|ref|YP_149907.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361765|ref|YP_002141401.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127089|gb|AAV76595.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093241|emb|CAR58686.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 948 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/261 (31%), Positives = 132/261 (50%), Gaps = 7/261 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 442 VLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 500 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 501 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 557 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT G I+ + Sbjct: 558 PLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG--CIVLHVRCDGD 615 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 616 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 675 Query: 796 STPAKGTLIEIIFPLYDTSHP 816 S P G+ + PLY +P Sbjct: 676 SEPGMGSQFTLRIPLYGAQYP 696 >gi|39996203|ref|NP_952154.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] gi|39982968|gb|AAR34427.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] Length = 537 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 103/375 (27%), Positives = 179/375 (47%), Gaps = 51/375 (13%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 N ++ E +L +IL +G+ + + G + N A +LFG Sbjct: 190 NLARISAEKNRLDTILRGMGEGLMVSDAGGTVTLVNPAFLELFGL--------------- 234 Query: 503 QNTPSVMNHYLTEILSL-DLRQT-----------LEKITLGSTKEEKLLSLRIIIKKLPF 550 T SV + EI +L +T +E++TL E+++L+ + + + Sbjct: 235 --TQSVEGRQIIEIARFPELHETFRAVVSSRSEHVEEMTLPLGDEKQVLTHWVPLMEEDE 292 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 HDIS+ K +L ++ DF+A VSHE+RTP+T I G++E + Sbjct: 293 LRGVVAVFHDISDLK----RLEVVRR----------DFVANVSHELRTPVTVIKGYAEAL 338 Query: 611 KNQRF--GPLGNPRYIEY-ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 P R++E ++ +R + D++ DLL +S++ESG + L + LD A Sbjct: 339 AGGLVEEDPERAGRFLEIICSHSER----LADLIRDLLTLSQLESGGLQLELTQIHLDRA 394 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 VS A L++ A K I+I S P +LAD ++Q+ +N++ NA+ +TP GG I + Sbjct: 395 VSHAAGLLEQKAARKEIVIDISALAGAPPVLADPGRLEQVLINLMDNALKYTPPGGTITL 454 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 S ++ V + V DTG+G+ +L + + F ++ ++ GTGLGL + K ++ Sbjct: 455 SADE-ADGMVRVSVHDTGIGIPPKDLPRIFERFYRVDAARSRDEGGTGLGLSIVKHIIQL 513 Query: 788 NMGKFYIFSTPAKGT 802 + G + S KGT Sbjct: 514 HGGSITVESEHGKGT 528 >gi|311696699|gb|ADP99572.1| multi-sensor hybrid histidine kinase [marine bacterium HP15] Length = 1166 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 123/233 (52%), Gaps = 4/233 (1%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K++A + KS FLA +SHEIRTPL AIIG+ E + + L P A + RSG Sbjct: 548 KELARNSAEAKSQFLANMSHEIRTPLAAIIGYGETLLDP---DLSEPEKRSSAETVVRSG 604 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +LD+VND+LD SKI++ K+++ V+L E + E + A EK + + Sbjct: 605 RHLLDLVNDILDHSKIDANKLDVDIVSVNLPELLDEIRAFFAPRAREKGLDFSIICEYPL 664 Query: 695 P-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 P ++ D ++QI +N+ NA+ FT G ++ E ++ RV DTG+GM +L Sbjct: 665 PEQVRTDPTRLRQIIINLCGNALKFTDKGSISLVVRCDRDQELLVARVVDTGIGMKPEQL 724 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 + PF Q + + GTGLGL +++ + + G + ST +G+ E+ Sbjct: 725 GRLFDPFAQGSAAISRQYGGTGLGLSISRRLAEMLGGSIRVNSTYGEGSEFEL 777 >gi|293414270|ref|ZP_06656919.1| TMAO reductase system sensor TorS [Escherichia coli B185] gi|291434328|gb|EFF07301.1| TMAO reductase system sensor TorS [Escherichia coli B185] Length = 914 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 85/250 (34%), Positives = 135/250 (54%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 432 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 487 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 488 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 544 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT GQI++ + T E+ ++ V D+G Sbjct: 545 TAIADDVPTALMGDPRRIRQVITNLLSNALRFTDE-GQIVLR-SRTDGEQWLVEVEDSGC 602 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ ST G+ + Sbjct: 603 GIDPAKLAEIFQPFIQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTLEVGSCFCL 658 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 659 RLPLRVATAP 668 >gi|213857465|ref|ZP_03384436.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 513 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 131/258 (50%), Gaps = 7/258 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 10 DVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 68 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 69 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 125 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT G I+ + + Sbjct: 126 VRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG--CIVLHVRCDGDYLS 183 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 184 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 243 Query: 799 AKGTLIEIIFPLYDTSHP 816 G+ + PLY +P Sbjct: 244 GMGSQFTLRIPLYGAQYP 261 >gi|91227910|ref|ZP_01262049.1| sensor protein TorS [Vibrio alginolyticus 12G01] gi|91188319|gb|EAS74616.1| sensor protein TorS [Vibrio alginolyticus 12G01] Length = 987 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 81/261 (31%), Positives = 129/261 (49%), Gaps = 14/261 (5%) Query: 562 SEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 S+ KQ +L + A+K AE+ S KS FLA +SHEIRTP+ ++G + ++ + Sbjct: 440 SQLKQANRRLNEEVLNHAKARKQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLIDSG 499 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P+ YA I+RSG +L I+ND+LD SKIE+G + + L + V + L Sbjct: 500 LNPIQK----RYAEIINRSGKTLLAILNDVLDYSKIEAGHLEIRHMGFDLHQMVEDTFQL 555 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHT 732 + A EK++L +++ R D+ + Q+ N++ NAI FT G I +S Sbjct: 556 MNSRAQEKKLLFSYHIESDVSRYWKGDVTRISQVLNNLVGNAIKFTDEGEIDIYVSLNPE 615 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 +V+ V DTG+G+ F Q G GTGLGL ++K +++A G Sbjct: 616 DESQVLFEVSDTGIGIAKKYQRTLFDAFTQAEGGMSQTG-GTGLGLAISKRIIEAMGGVL 674 Query: 793 YIFSTPAKGTLIEIIFPLYDT 813 + S G+ PL ++ Sbjct: 675 EVDSEEGNGSRFWFSIPLEES 695 >gi|307728423|ref|YP_003905647.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] gi|307582958|gb|ADN56356.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] Length = 1488 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 89/264 (33%), Positives = 136/264 (51%), Gaps = 8/264 (3%) Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 S +S D S +L+ A+ +AE S K DF A +SHEIRTP+ ++G EV+ Sbjct: 814 SVVWSGYWVDASIEHARAEELARARDVAEAASRAKDDFFAMMSHEIRTPMNGVLGLVEVL 873 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + PL N E I S +L I++DLLD SKIE+G++ + EP+ L E V Sbjct: 874 ERT---PL-NADQGEMLGMIHESAGALLQILDDLLDYSKIEAGRLTIEAEPIDLRELVDN 929 Query: 671 AISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG--GQIII 727 A+ L+ A+EK + +R A ++ L D ++Q+ N+L NAI FTP G + Sbjct: 930 AVGLLAGRAHEKGLKVRVDIAPDVAATLRGDSVRLRQVLFNLLGNAIKFTPEGKVEVSVS 989 Query: 728 STTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 HT ++ I + V DTG+G+ K +PF Q +S R GTGLGL + + +++ Sbjct: 990 VVEHTDAQQTIEMVVEDTGIGIAADVQAKLFEPFVQAESSTTRRFGGTGLGLTICRKLIE 1049 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPL 810 G + S +GT + + L Sbjct: 1050 LMNGSLTLDSELGRGTRMTVRLGL 1073 >gi|21109342|gb|AAM37873.1| histidine kinase-response regulator hybrid protein [Xanthomonas axonopodis pv. citri str. 306] Length = 1225 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 127/241 (52%), Gaps = 8/241 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S K+ FLA + HE+RTP+T ++G SE++ +P Y I R Sbjct: 843 HKQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT----TQDPTQRSYTESIRR 898 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--RILIRTSF 690 +G +L +VND LD+++IESG++ L F+P S+ + V+E +L+ A E+ R + Sbjct: 899 AGAHLLRLVNDALDLARIESGRLELDFQPFSVRQLVAEVEALMAPLAQERGLRFSLEIGL 958 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 +I D ++QI LN+L+NAI FT G + TT S + + V DTG G+ Sbjct: 959 LGDI-TASGDSTRIRQILLNLLNNAIKFTERGVVALKLTTLGSYQGLRFEVADTGPGINA 1017 Query: 751 YELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + + F Q ++ R G+GLGL + + + A G + S GT + P Sbjct: 1018 EQKARLFQRFEQGNGAKTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTRFVVDLP 1077 Query: 810 L 810 L Sbjct: 1078 L 1078 >gi|237808385|ref|YP_002892825.1| histidine kinase [Tolumonas auensis DSM 9187] gi|237500646|gb|ACQ93239.1| histidine kinase [Tolumonas auensis DSM 9187] Length = 1131 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 142/248 (57%), Gaps = 6/248 (2%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L +IS ++ KL AKK AE ++ KS +LA +SHE+RTPL ++G+++++ + R Sbjct: 647 LLTQEISAHEKTSRKLEQAKKSAETANNAKSRYLAGLSHELRTPLNVLLGYAQLLSDDR- 705 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + + EYA+ + R+G + D++ LL+ISKIE+G++ L +L ++E + Sbjct: 706 --KLDHQTREYAHILRRNGKHLSDLLEGLLEISKIEAGRLELQRVEFNLATMLNELAEMF 763 Query: 676 QLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 + A++K + N+P +A D + ++QI +N+L+NAI +T G++I T+ N Sbjct: 764 AMEASQKGLEFEYLPCVNLPVYIATDKQRLRQILINLLNNAIKYTRE-GKVIFRVTY-RN 821 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + V+DTG+G++ +++++ PF +I +GTGLGL ++ A+ + G Sbjct: 822 QVARFSVQDTGIGLSEHDIQQIFNPFERIQTHNTRAIQGTGLGLTISHALANLMGGDISC 881 Query: 795 FSTPAKGT 802 S P G+ Sbjct: 882 QSQPDVGS 889 >gi|204929282|ref|ZP_03220425.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321826|gb|EDZ07025.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322617023|gb|EFY13929.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617671|gb|EFY14570.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624699|gb|EFY21528.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630248|gb|EFY27018.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634429|gb|EFY31162.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639139|gb|EFY35831.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640136|gb|EFY36802.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645776|gb|EFY42300.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651551|gb|EFY47926.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656112|gb|EFY52411.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659464|gb|EFY55711.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665926|gb|EFY62109.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669836|gb|EFY65977.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673821|gb|EFY69918.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678579|gb|EFY74635.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683625|gb|EFY79639.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687701|gb|EFY83671.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323196202|gb|EFZ81359.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198370|gb|EFZ83472.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204192|gb|EFZ89203.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208578|gb|EFZ93517.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323218249|gb|EGA02959.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222993|gb|EGA07342.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227428|gb|EGA11593.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232244|gb|EGA16347.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235723|gb|EGA19807.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241117|gb|EGA25153.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244859|gb|EGA28861.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248570|gb|EGA32501.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251590|gb|EGA35458.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255022|gb|EGA38812.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263083|gb|EGA46629.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268143|gb|EGA51620.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270764|gb|EGA54202.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 948 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/261 (31%), Positives = 132/261 (50%), Gaps = 7/261 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 442 VLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 500 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 501 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 557 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT G I+ + Sbjct: 558 PLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG--CIVLHVRCDGD 615 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 616 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 675 Query: 796 STPAKGTLIEIIFPLYDTSHP 816 S P G+ + PLY +P Sbjct: 676 SEPGMGSQFTLRIPLYGAQYP 696 >gi|59713420|ref|YP_206195.1| hybrid sensor kinase RscS [Vibrio fischeri ES114] gi|12620414|gb|AAG60694.1|AF319618_1 RscS [Aliivibrio fischeri] gi|59481668|gb|AAW87307.1| hybrid sensor kinase RscS [Vibrio fischeri ES114] Length = 927 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 107/377 (28%), Positives = 185/377 (49%), Gaps = 25/377 (6%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E E +L + E D I I++++G + N++ S L G +EDI K L+ + Sbjct: 263 EKEKAKLALVAEYAHDAIFILDKQGRLTWINQSYSALSGNTLEDIEGKDLPSILQLDKIK 322 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFSSCYSLTMH------D 560 N I+ L +T I+ T K +L I + P MH D Sbjct: 323 HANI----IILLQSLETGTSISFELTNHHKDGTLFWIDVSITPILEPNGNIMHYIAVERD 378 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I++ K+ ++KL A A+ + KS FLA +SHE+RTPL I+G +++I++ + + Sbjct: 379 ITKKKELEDKLIKAANKADVSNRAKSTFLATMSHELRTPLNGILGMAQIIESN----IKD 434 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQL 677 + + SG+ +L ++N++LD SKIE K+ L+ F V + E ++ + + + Sbjct: 435 KEQHKQIKMLLESGDHLLFLLNEILDFSKIEQNKLELNHASFYFVDIIEPITN--TYLSV 492 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----S 733 N+ I + NN + D ++QI N++SNA+ FT G I ++ +HT Sbjct: 493 CENKGLKFIIDNKINNEIVFIGDKPRIRQIIFNLISNAVKFTHEGS-ITLNFSHTLTGKG 551 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + V ++++DTGVG+ L+ +P+ Q S + GTGLGL + K + D G Sbjct: 552 KQAVQIKIKDTGVGIRENRLKHIFEPYIQAEASTTRQYGGTGLGLAIVKQLTDIMRGYIS 611 Query: 794 IFSTPAKGTLIEIIFPL 810 + S+ KG+ ++ PL Sbjct: 612 VSSSEGKGSCFTLVLPL 628 >gi|116620870|ref|YP_823026.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116224032|gb|ABJ82741.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 1092 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/242 (34%), Positives = 131/242 (54%), Gaps = 11/242 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q + L+ A + A + + KS FLA +SHEIRTP+ ++G +E++ G R + Sbjct: 575 QQNNSALALALESARQATRLKSQFLANMSHEIRTPMNGVLGMTELLVQS--GLTEEQRSL 632 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANE 681 A + +SG +L I+ND+LD SKIESGK+ L F+P + EAV I L+ A+ Sbjct: 633 --ALSVTQSGEHLLAIINDILDFSKIESGKLELEATPFDPTATIEAV---IELMAPTAHI 687 Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K + + A +P R+ D ++Q+ LN+L NA+ FT G I +T + + + + Sbjct: 688 KNLELTYWIAAEMPARVRGDAARLRQVLLNLLGNALKFTAEGEIAIQATFDAAADRLRVS 747 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+G+ + F Q NS R GTGLGL +AK++V+ G+ I S Sbjct: 748 VADTGIGIPEAAIPHLFAAFTQADNSTTRRFGGTGLGLTIAKSIVELMDGEIGIESRYGH 807 Query: 801 GT 802 G+ Sbjct: 808 GS 809 >gi|331672528|ref|ZP_08373317.1| TMAO reductase sytem sensor TorS [Escherichia coli TA280] gi|331070171|gb|EGI41537.1| TMAO reductase sytem sensor TorS [Escherichia coli TA280] Length = 973 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 132/250 (52%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK S KS FLA +SHEIRTPL I+G ++++ + L R + I Sbjct: 491 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADN--SALNAQR--DDLRAITD 546 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 547 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIHLA 603 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E ++ V D+G Sbjct: 604 TAIADDVPTALMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRTDGELWLVEVEDSGC 661 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 662 GIDPTKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 717 Query: 807 IFPLYDTSHP 816 PL + P Sbjct: 718 RLPLRVATAP 727 >gi|307261423|ref|ZP_07543096.1| hypothetical protein appser12_9870 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868880|gb|EFN00684.1| hypothetical protein appser12_9870 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 586 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 EK + KS +A +SHE+RTPL IIG S ++ G L + EY I+ S + Sbjct: 79 EKNNRDKSVLMATISHELRTPLNGIIGLSRILLE---GELTEQQR-EYLKTINISAVSLG 134 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-I 697 I +D++D+ KI+S ++ L + + + +S+ + L A + +I +++++P I Sbjct: 135 HIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLPNFI 194 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + QI N++SNA+ FTP+GG I +S N+ ++DTG+G+ +E K Sbjct: 195 YVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQRKVF 254 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 F Q NSQ+ + +G+G+GL ++K + G + S KG+ Sbjct: 255 AMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDLTLHSEMGKGS 299 >gi|254412527|ref|ZP_05026301.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196180837|gb|EDX75827.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 667 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 88/295 (29%), Positives = 136/295 (46%), Gaps = 45/295 (15%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DI++ K + + AK+ AE + KS FLA +SHE+RTPL I+G SE+++ + Sbjct: 360 VRDITDAKLVQIEFQQAKEEAEAANRAKSAFLASMSHELRTPLNGILGLSELLR-EDAED 418 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 LG ++ I SG +L+++ D+LDISKIE+GKM+L+ E + + E VQ Sbjct: 419 LGYTDFVPDLQQIYDSGLHLLNLITDILDISKIEAGKMSLYLESFDISTLIVEVQKTVQP 478 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736 +K + A ++ + AD VKQ+ LN++SN+ FT + G I++S T S E Sbjct: 479 LIKKKTNTLEVHGAASLGTMYADRTKVKQLLLNLISNSAKFTEN-GTIVLSVTRESENEG 537 Query: 737 ------------------------------------------VILRVRDTGVGMTNYELE 754 VI V DTG+GMT + Sbjct: 538 NGNSKRDAKMLLVNGELSVVSSATLDSASMPDAGNDDQTSDWVIFSVSDTGIGMTPEQAA 597 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +PF Q +S + GTGLGL + + + G + S G+ P Sbjct: 598 KIFQPFVQADDSTTKKYGGTGLGLAICQRFCEMMGGNIQVESEVGVGSTFSFYLP 652 >gi|171915289|ref|ZP_02930759.1| signal transduction histidine kinase [Verrucomicrobium spinosum DSM 4136] Length = 765 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 130/238 (54%), Gaps = 13/238 (5%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE S KS F+A +SHEIRTP+ ++G +++++ PL + + + +RS + + Sbjct: 367 AEAASRSKSIFVASMSHEIRTPMNGVLGMLQLLRDT---PLSEAQA-KLVHSAERSTDAL 422 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L+++ D+LD+SK+ESGKM L +P L SE SL+Q+ A+ K I + + ++P Sbjct: 423 LEVIGDILDLSKVESGKMELTIKPFQLASLFSEIQSLMQVRADAKDIQMVFAVPADLPEW 482 Query: 698 LA-DLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHTSNEEVI---LRVRDTGVGM 748 +A D ++QI +NI+ NA+ FT G + + + +V+ + VRDTGVG Sbjct: 483 VAGDAGCIRQILINIIGNAVKFTERGRVDVEVECSLRPSSEPGGKVVQLNVSVRDTGVGF 542 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 + +PF + + +R GTGLGL ++K++ + G S +G+ +I Sbjct: 543 GEEFFSRIFQPFSRNEEAGGLRQGGTGLGLAISKSLAELMGGSISAHSVLKQGSQFQI 600 >gi|120555598|ref|YP_959949.1| integral membrane sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] gi|120325447|gb|ABM19762.1| integral membrane sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] Length = 784 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/262 (30%), Positives = 137/262 (52%), Gaps = 10/262 (3%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D +Q + + A + + K+ FLA VSHE+R PL +++G++ ++ + P Sbjct: 230 LEDTRSLRQTTIQTQGERDEAIRANHAKNQFLANVSHELRIPLQSVLGYANLLTDT---P 286 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 L + EY N + + + I+NDLLDIS +E+GK+ L P L E +++ I ++ Sbjct: 287 LDQEQR-EYVNTLLNASESLSSIINDLLDISSMEAGKLELEAIPFDLRETLNDLIHMLGS 345 Query: 678 YANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A EK + + N+P L D ++Q+ LN+LSNAI FT S G ++IS +E Sbjct: 346 RAREKGLALEVRVDENLPWALTGDPVRIRQVLLNLLSNAIKFTDS-GHVLISIEILGRKE 404 Query: 737 VILRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 +R+R DTGVG+ ++ +P+ Q+ Q + G GLGL + + +VD G Sbjct: 405 GKVRLRLAVEDTGVGINPEDIPLVYEPYVQLGQRFQRQLPGAGLGLTICRQLVDLMGGSM 464 Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814 + S P +G+ + L + + Sbjct: 465 DLESRPGEGSTFWVELSLQEAT 486 >gi|94313180|ref|YP_586389.1| periplasmic sensor signal transduction histidine kinase [Cupriavidus metallidurans CH34] gi|93357032|gb|ABF11120.1| periplasmic sensor signal transduction histidine kinase; putative exported protein [Cupriavidus metallidurans CH34] Length = 681 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 139/256 (54%), Gaps = 12/256 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG- 619 ++ + + L+ A+ AE + KS FLA +SHEIRTPL I+G E+++ + PL Sbjct: 407 VTHERAQMMALAQARDAAEASARTKSSFLAMMSHEIRTPLQGILGLLELVE---YSPLSA 463 Query: 620 -NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 R + A+ +G + I++D+LD +K+++G++ L P+ L + +SL+ Sbjct: 464 EQRRQVRLAS---EAGQALRQILDDVLDYAKMDAGRLRLALAPLDLRGLFANVLSLLAPR 520 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST---THTSN 734 A K + ++ ++P +++AD ++QI LN++ NAI FT G ++++ T Sbjct: 521 AQAKGLQLQQWVQPDVPVQLVADGARLRQILLNLVGNAIKFTECGSVDLLASVEPTSAGE 580 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + +++ V DTG+G+ ++ + PF Q + R +GTGLGL +++ + G+ + Sbjct: 581 DVLVVSVADTGIGIAPEDIARLFTPFVQGESGPARRFDGTGLGLAISRQLAQLMGGELML 640 Query: 795 FSTPAKGTLIEIIFPL 810 ST GT + + P+ Sbjct: 641 DSTLGVGTQVMLRVPM 656 >gi|302879489|ref|YP_003848053.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302582278|gb|ADL56289.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 1179 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 111/413 (26%), Positives = 187/413 (45%), Gaps = 41/413 (9%) Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRIN---KRKMEIEVMQ----LCSILEATSDGIA 466 T +PF M Q+G + V R + ++ ME++V L S+++ +G+ Sbjct: 382 TVVPF---------MDQDGKPYQYVSMRTDITAQKAMELQVQSERRLLKSVMDTLGEGVY 432 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ-TL 525 +++++G N + G+ +E+++ + L + P E +RQ T+ Sbjct: 433 MLDQDGNCTYMNTEAEDIVGWTIEEVVGRNLHDLLHVHRPDGTRVTADEC---PIRQSTM 489 Query: 526 EKITLGSTKE------EKLLSLRIIIKKL---PFSSCYSLTMHDISEWKQEKNKLSHAKK 576 K S E L + I+ + + DISE K + +L AK+ Sbjct: 490 NKKVYHSEAEYFQHKNGTLFPIAIVASPMIDGDLITGSVAAFQDISERKFTERELLRAKE 549 Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 AE S K DFLA +SHEIRTP+ IIG +E+ + + EY N + S + Sbjct: 550 SAEAASRAKGDFLATMSHEIRTPMNGIIGMTELALDTEM----SAEQREYLNMVKSSADA 605 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 +L I+ND+LD SKIESGKM L + + A + + A +K + + IP Sbjct: 606 LLTIINDILDFSKIESGKMELESVEFDVRNLFASAEKTLAIRAAQKGLELVYDVDGAIPD 665 Query: 697 IL-ADLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHTSNEEVILRVRDTGVGMTN 750 +L D ++Q+ N+L NAI F+ G ++++ T+ V + V D G+G+ Sbjct: 666 LLVGDPGRLRQVLTNLLGNAIKFSEHGAITLRMKLLMQTSDGLC--VRIEVADQGIGIPV 723 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +L + F Q S + GTGLGL ++ +V A G + S G++ Sbjct: 724 DKLAHIFEAFTQADTSTTRKYGGTGLGLAISSKLVAAMGGDLSVESQVGIGSV 776 >gi|148550789|ref|YP_001260228.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1] gi|148503208|gb|ABQ71461.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1] Length = 1143 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 132/237 (55%), Gaps = 4/237 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ S +KSDFLA +SHE+RTPL +++ S+++ + G L + + I+YAN I+ SGN +L Sbjct: 469 EQASQYKSDFLANMSHELRTPLNSLLILSKLLGDNSQGNLSDEQ-IKYANTIESSGNDLL 527 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-I 697 ++ND+LD+SKIE+G + + E V+L + A +K + S +++ R I Sbjct: 528 TLINDILDLSKIEAGHIEIRPETVALQRLTGDLRRTFDPLAEKKGLGFDISLSDDCARTI 587 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 +D ++QI N+LSNA FT GQ+ ++ + + V DTG+G++ + Sbjct: 588 ESDRMRLEQILKNLLSNAFKFTER-GQVSLAIERVDDAFIRFAVSDTGIGISAEQQASIF 646 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL-YDT 813 + F Q + + GTGLGL +++ + G+ + S P +G+ + PL YD Sbjct: 647 EAFHQADATISRKFGGTGLGLSISRELARLLGGRIALESRPGEGSTFTLTIPLAYDA 703 >gi|332968095|gb|EGK07182.1| phosphate regulon sensor histidine kinase protein PhoR [Desmospora sp. 8437] Length = 585 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 128/226 (56%), Gaps = 6/226 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD-IVND 643 +++F+A VSHE++TP+T++ GF+E + + G +P + I ++ +L L+ ++ D Sbjct: 364 RTEFVANVSHELKTPVTSLRGFAETLLD---GAAEDPDMRKEFLEIIQAESLRLERLIAD 420 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 LLD+SKIES M L + + + E + V+ ++++ R P + D Sbjct: 421 LLDLSKIESRNMPLDIQTIGIGELLRSTAKTVEEQMRKRKLSFRVKSEEEFP-VQVDPDR 479 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 QI LN+LSNA+ +TP+GG++I+S + I RV DTG+G+ +L + + F ++ Sbjct: 480 FSQILLNLLSNAMTYTPAGGEVILSAGRGETDWWI-RVADTGIGIPGEDLPRIFERFYRV 538 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ GTGLGL + K +V+A+ G+ + S KGT I + FP Sbjct: 539 DKARSRESGGTGLGLAIVKHLVEAHQGEIQVTSRAGKGTEITLTFP 584 >gi|170293890|gb|ACB13025.1| putative histidine kinase sensor/regulator [Hydrogenophaga sp. PL2G6] Length = 439 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/256 (30%), Positives = 137/256 (53%), Gaps = 8/256 (3%) Query: 559 HDISEWKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 D+ + E+ +L A AE + KS+FLA +SHEIRTP+ I+G +++++ Sbjct: 29 EDLEQQVAERTAELQMALDRAEASTRAKSEFLAMMSHEIRTPMNGILGMAQLLETTTL-- 86 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + +Y + I SG +L ++ND+LD SKIE+G ++L + L EA+ ++L + Sbjct: 87 --DTEQSDYLDAIRSSGETLLVLLNDILDFSKIEAGYLDLERQDFDLQEAIFSTLTLYRP 144 Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE 735 A K + + +FA +P + D ++Q+ N+L+NAI FT G + +S ++ Sbjct: 145 MAEGKSLALDHTFAAGLPTYVRGDRTRLRQVLSNLLANAIKFTSEGRVHVDVSVRRLADL 204 Query: 736 EVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 ++ + V DTG+G+ + L++ + F Q+ +S R GTGLGL ++ + A G + Sbjct: 205 LMLDVAVEDTGIGIPHNRLDQLFRAFTQVDSSTTRRYGGTGLGLAISARLCAAMDGDISV 264 Query: 795 FSTPAKGTLIEIIFPL 810 S KG++ L Sbjct: 265 SSRVGKGSIFRFSVAL 280 >gi|153833290|ref|ZP_01985957.1| tmao reductase sytem sensor tors [Vibrio harveyi HY01] gi|148870426|gb|EDL69347.1| tmao reductase sytem sensor tors [Vibrio harveyi HY01] Length = 985 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/254 (32%), Positives = 129/254 (50%), Gaps = 10/254 (3%) Query: 571 LSHAK--KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 L+HAK K AE+ S KS FLA +SHEIRTP+ ++G + ++ + NP YA Sbjct: 454 LNHAKARKQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLIDSGL----NPMQKRYAE 509 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RSG +L I+ND+LD SKIE+G + + L + V + L+ A EK++L Sbjct: 510 IINRSGKTLLAILNDVLDYSKIEAGHLEIRSLGFDLHQMVEDTFQLMNGKAQEKKLLFSY 569 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGV 746 +++ R D+ + Q+ N++ NAI FT G I +S +V+ V DTG+ Sbjct: 570 HIESDVGRYWKGDVTRINQVLSNLVGNAIKFTEEGEIDIYVSLNPEDESQVLFEVSDTGI 629 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ + + F Q G GTGLGL +++ ++ A G + S G+ Sbjct: 630 GIAKKDQKTLFDAFTQAEGGMNQTG-GTGLGLAISRRIIQAMGGCLDVDSEEGHGSRFWF 688 Query: 807 IFPLYDTSHPHDCI 820 PL + S P + + Sbjct: 689 SIPL-EESEPVETV 701 >gi|17228134|ref|NP_484682.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17129984|dbj|BAB72596.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 820 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/258 (31%), Positives = 139/258 (53%), Gaps = 14/258 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 ++ KQ K AK+ A+ ++ KS+FLA +SHE+RTPL I+G+++++ + P Sbjct: 341 TQLKQSKALADAAKESADSANNAKSEFLANMSHELRTPLNGILGYAQILGRSKVLP---D 397 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + + N I + G+ +L ++ND+LD+SKIE+ K+ L + L + + + + + Sbjct: 398 KERQGVNIIHQCGSHLLTLINDILDLSKIEARKLELASQAFHLPSFMQGVVEICHIRVQQ 457 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K I ++P I AD + ++Q+ +N+L NAI FT G + + T EE R Sbjct: 458 KGIEFHYEPDADLPAGISADEKRLRQVLINLLGNAIKFTDRGS-VALRVQRTGLEESDPR 516 Query: 741 VR------DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + DTGVG+ + ++ K + F Q+ Q+ + EGTGLGL +++ +V G+ + Sbjct: 517 TKLRFSIVDTGVGIASADINKLFQTFEQV-GEQKRKVEGTGLGLAISQQLVQLMGGQIQV 575 Query: 795 FSTPAKGT--LIEIIFPL 810 S G+ EII PL Sbjct: 576 KSQLGVGSEFFFEIILPL 593 >gi|315125164|ref|YP_004067167.1| sensor protein [Pseudoalteromonas sp. SM9913] gi|315013677|gb|ADT67015.1| sensor protein [Pseudoalteromonas sp. SM9913] Length = 908 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 127/241 (52%), Gaps = 18/241 (7%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK+ ++ + KS FLA +SHEIRTPL A+IGFS + K++ Y N I Sbjct: 525 LVKAKQQSDLANQAKSRFLANMSHEIRTPLNAVIGFSTLAKSED----SAETLTGYLNKI 580 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + + +L ++ND+LDISKIES K+ L P L+ ++ S+ + A +K I + Sbjct: 581 NLASKSLLSLINDVLDISKIESQKLTLEVAPFDLNALLARISSMFEQSAEQKGINWKVD- 639 Query: 691 ANNIPRIL---ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRV 741 N +P + D+ ++QI LN+ SNAI FT G +S + S E ++ L + Sbjct: 640 -NQLPTDIWFEGDVMRIEQILLNLCSNAIKFTYEGE---VSVSAYSKEITDRRRQITLTI 695 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +D+G+G+ E K F Q +S + GTGLGL +AK + G + S P KG Sbjct: 696 KDSGIGIAPSEQSKLFDAFTQADSSTSRKFGGTGLGLAIAKELSLLMSGDISVQSEPGKG 755 Query: 802 T 802 + Sbjct: 756 S 756 >gi|239909171|ref|YP_002955913.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239799038|dbj|BAH78027.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 840 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 100/363 (27%), Positives = 174/363 (47%), Gaps = 17/363 (4%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +ILEA+ GI + R+G LS N + + + G E + R+ F Q ++ L E Sbjct: 320 AILEASPLGIGVYRRDGQCLSVNASFAHIVGGDREAVQRQNFN----QLESWRVSGLLPE 375 Query: 516 IL-SLDLRQTL--EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 IL +LD +T E + + + L R++ + L ++D + KQ +++L Sbjct: 376 ILETLDNGRTFHSEAQVVSTFGKPIWLEWRLVRFVRGGQNHALLLINDATVRKQAEDELR 435 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 AK AE S KS FLA +SHE+RTPL + G E++ + EY + Sbjct: 436 QAKHQAEAASRAKSAFLANMSHELRTPLGGVAGMLELLLTTAL----DGEQHEYVTAALK 491 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 S + D+++D+LD+S+IE+GK++L P + + + L A EK +++ + Sbjct: 492 STRRLSDLLSDILDLSRIEAGKLDLRLAPFETANLRAAILEVFALAAREKGLILEFTLHP 551 Query: 693 NIP-RILADLRSVKQIALNILSNAIHFTPSGGQII----ISTTHTSNEEVILRVRDTGVG 747 +P RI +D + QI N++ NA+ FT G + + ++ V D+GVG Sbjct: 552 GLPARIESDEARLLQILFNLVGNAVKFTGLGFVRVDLWSLPARPDGRTPLVFSVADSGVG 611 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + L + +PF Q + +Q G GLGL + ++ G+ + + P GT + Sbjct: 612 IPDGRLGEIFEPFAQGDHPRQQSRFGVGLGLSIVSRLIALLGGELAVDNAPG-GTTVYGC 670 Query: 808 FPL 810 P+ Sbjct: 671 LPV 673 >gi|77748688|ref|NP_643337.2| histidine kinase-response regulator hybrid protein [Xanthomonas axonopodis pv. citri str. 306] Length = 1194 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 127/241 (52%), Gaps = 8/241 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S K+ FLA + HE+RTP+T ++G SE++ +P Y I R Sbjct: 812 HKQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT----TQDPTQRSYTESIRR 867 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--RILIRTSF 690 +G +L +VND LD+++IESG++ L F+P S+ + V+E +L+ A E+ R + Sbjct: 868 AGAHLLRLVNDALDLARIESGRLELDFQPFSVRQLVAEVEALMAPLAQERGLRFSLEIGL 927 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 +I D ++QI LN+L+NAI FT G + TT S + + V DTG G+ Sbjct: 928 LGDI-TASGDSTRIRQILLNLLNNAIKFTERGVVALKLTTLGSYQGLRFEVADTGPGINA 986 Query: 751 YELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + + F Q ++ R G+GLGL + + + A G + S GT + P Sbjct: 987 EQKARLFQRFEQGNGAKTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTRFVVDLP 1046 Query: 810 L 810 L Sbjct: 1047 L 1047 >gi|117924952|ref|YP_865569.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117608708|gb|ABK44163.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 837 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/278 (28%), Positives = 140/278 (50%), Gaps = 10/278 (3%) Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 LSL+ ++ + ++ DISE ++ + L AK+ AE S KS FL+ +SHEIRT Sbjct: 248 LSLQPMLTNAGEKLGFRTSIRDISERREAEQALEAAKRSAETASKAKSRFLSTMSHEIRT 307 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 P+TAI+G +E++ + E+ + I RSG+ +L++++D+L IS+ E + Sbjct: 308 PMTAILGVAELMSGTHLDRVQR----EHVSIIRRSGDALLELIDDILVISQNEGAQEGEK 363 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIH 717 +D + + + A EK I + + A +P R++ D ++Q+ +N++ NAI Sbjct: 364 QVVFDVDHLLESVMDMASYRATEKGIKLLSHVAALVPVRVMGDPVRLRQVLINLVGNAIK 423 Query: 718 FTPSGGQIIISTTHTSN----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 F+ G +I N + V D G+G+ + E F Q+ ++ R G Sbjct: 424 FSEKGEVVIQVRPGPRNGPERSDYRFSVSDNGIGIPMEKREAIFDAFSQVDETESRRFGG 483 Query: 774 TGLGLPLAKAMVDANMGKF-YIFSTPAKGTLIEIIFPL 810 TGLGL + + +V+ G+ +FS P G+ PL Sbjct: 484 TGLGLTICRRLVNLMGGQLELLFSEPGVGSTFAFDIPL 521 >gi|330862443|emb|CBX72601.1| hypothetical protein YEW_HP33960 [Yersinia enterocolitica W22703] Length = 733 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/259 (32%), Positives = 138/259 (53%), Gaps = 13/259 (5%) Query: 559 HDISEWKQEKNKLSHAK-KIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 +D E K ++ L+ AK K+A ++++H KS L +SHEIRTPL +G E+++N Sbjct: 177 YDTLEMKVKERTLALAKSKLAAEQANHRKSIHLTTISHEIRTPLNGALGAVELLQNT--- 233 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL +Y + A + + +L I+N+LLD S+IESG++ L E +L + +A+ + Sbjct: 234 PLAPEQY-QLAETARQCSHSLLAIINNLLDFSRIESGQLTLSQEKTALLPLLDQAMLTIH 292 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K I + T ++++P I D + +KQI +N+L NA+ FT G I T + Sbjct: 293 SQVLNKPIALSTYVSSDVPLEIELDSQRIKQILVNLLGNAVKFTRQGH--ISLTVERKGQ 350 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++ V DTG G+ + EK +PF Q + +Q GTGLGL +A + G ++ Sbjct: 351 QLCFTVEDTGCGIDSQHQEKIFRPFIQTYDHRQ----GTGLGLTIADNLAKMMGGNITLY 406 Query: 796 STPAKGTLIEIIFPLYDTS 814 S P G+ + P T+ Sbjct: 407 SKPNCGSHFSLTLPFRGTT 425 >gi|262381814|ref|ZP_06074952.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|301310286|ref|ZP_07216225.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|262296991|gb|EEY84921.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|300831860|gb|EFK62491.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 364 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 142/278 (51%), Gaps = 20/278 (7%) Query: 537 KLLSLRIIIKKLPFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 K + L I+ L SS L M +DISE K + ++ A EK KS FLA +SHE Sbjct: 98 KWVRLDIMEAGLEKSSPILLLMNYDISELKAMEERMLKA----EKSERLKSSFLANISHE 153 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 IR PL AI+GFS ++ ++ G L EY N I + L+L IVND+LD++K+ESG M Sbjct: 154 IRMPLNAIVGFSSLLGDEEDGELRQ----EYINLIQTNNELLLGIVNDVLDLAKLESGTM 209 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL--ADLRSVKQIALNILS 713 F L + + E ++ Q+ + ++ ++ L +D +KQ+ N ++ Sbjct: 210 TFDFMEFDLRQLIVETVASFQIKVPRG---VALTYPESLDSFLLRSDRIRLKQVLGNFIT 266 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 NAI +T S G II+S N EV+L V DTG GM+ F + N +Q G Sbjct: 267 NAIKYT-SIGSIILSYQAMEN-EVLLSVTDTGEGMSEEIKLHVFDRFYKGRNQKQ----G 320 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 GLGL + + +++ G+ + S KG+ P++ Sbjct: 321 IGLGLSICQNIIERLGGRIGVSSEQGKGSCFWCTLPIF 358 >gi|165976354|ref|YP_001651947.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303252978|ref|ZP_07339133.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|165876455|gb|ABY69503.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302648169|gb|EFL78370.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 616 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 EK + KS +A +SHE+RTPL IIG S ++ G L + EY I+ S + Sbjct: 109 EKNNRDKSVLMATISHELRTPLNGIIGLSRILLE---GELTEQQR-EYLKTINISAVSLG 164 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-I 697 I +D++D+ KI+S ++ L + + + +S+ + L A + +I +++++P I Sbjct: 165 HIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLPNFI 224 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + QI N++SNA+ FTP+GG I +S N+ ++DTG+G+ +E K Sbjct: 225 YVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQRKVF 284 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 F Q NSQ+ + +G+G+GL ++K + G + S KG+ Sbjct: 285 AMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDLTLHSEMGKGS 329 >gi|162450584|ref|YP_001612951.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161161166|emb|CAN92471.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 414 Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 125/236 (52%), Gaps = 10/236 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSE--VIKNQRFGP--LGNPRYIEYANYIDRSGNLVLDI 640 K+ F+ +H++R PL I+G+S+ ++ ++R P L +E N I S +L + Sbjct: 169 KNRFVGMAAHDLRNPLGVILGYSDFMLMSHRRGEPSSLLKEGGVEIVNMIRSSSKFMLSL 228 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700 +NDLLD+S IE GK+NL + + + V ++L + A +K + + +PR+ D Sbjct: 229 INDLLDVSMIELGKLNLDRKSTDIVQLVESNVALNMVLAGQKNMKLVVESDEGVPRVEVD 288 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIIST------THTSNEEVILRVRDTGVGMTNYELE 754 ++Q+ N++SNAIH++P G I + EVIL V+D G G+ +L Sbjct: 289 AHKLEQVLNNLISNAIHYSPPGTTIRVRVHGGRGEDAGGGAEVILSVKDEGPGIAAEDLG 348 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 K +PFG+ TGLGL +A+ +V+ + G+ ++ S +KG+ + P+ Sbjct: 349 KLFRPFGRARTVSTGGERSTGLGLAIAQRVVEGHGGRIWVESVVSKGSTFFVALPV 404 >gi|303251394|ref|ZP_07337571.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302649748|gb|EFL79927.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 616 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 EK + KS +A +SHE+RTPL IIG S ++ G L + EY I+ S + Sbjct: 109 EKNNRDKSVLMATISHELRTPLNGIIGLSRILLE---GELTEQQR-EYLKTINISAVSLG 164 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-I 697 I +D++D+ KI+S ++ L + + + +S+ + L A + +I +++++P I Sbjct: 165 HIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLPNFI 224 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + QI N++SNA+ FTP+GG I +S N+ ++DTG+G+ +E K Sbjct: 225 YVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQRKVF 284 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 F Q NSQ+ + +G+G+GL ++K + G + S KG+ Sbjct: 285 AMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDLTLHSEMGKGS 329 >gi|282895633|ref|ZP_06303758.1| Multi-component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] gi|281199327|gb|EFA74192.1| Multi-component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] Length = 1329 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 109/380 (28%), Positives = 180/380 (47%), Gaps = 43/380 (11%) Query: 456 SILEATSDGI-AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-------EQNTPS 507 +IL D I +I N +GI L N+ K+FGY E++L K + L +N S Sbjct: 696 AILSIADDAIISIDNSQGITL-FNQGAEKIFGYTAEEVLGKKLDLLLPTRFAQEHRNHVS 754 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWK 565 + RQ + G K+ I KL S Y++ + DI+E K Sbjct: 755 TFGKSSAHARRMGERQEI----FGCRKDGSEFPAEASISKLDLGPESVYTVILRDITERK 810 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG--NPRY 623 Q EK K +F++ VSHE+RTPLT+I G ++ + R Sbjct: 811 Q-----------VEK---MKDEFVSVVSHELRTPLTSIHGSLGMLTSGLLSTTSEQGKRL 856 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 ++ A D + LV ++ND+LDI +IESGK+ + E L + ++ AI+++Q A++ Sbjct: 857 LQIAT--DSTERLV-RLINDILDIERIESGKVKMERENCDLRDLINSAINIMQALADKAG 913 Query: 684 ILIRTSFANNIPRI-----LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + + +N+ AD + Q N+ SNAI F+ G + + T ++V+ Sbjct: 914 VSLSIQNSNSSSNSSSIQLWADPDRIIQTLTNLFSNAIKFSEPGSTVYL-MTELQKDQVL 972 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V+DTG G+ +LE + F Q+ +S +GTGLGL + K++V + GK ++ S Sbjct: 973 VTVQDTGRGIPEDKLESIFERFQQVDSSDSRNHDGTGLGLAICKSIVQQHGGKIWVKSVL 1032 Query: 799 AKGTLIEIIFPL---YDTSH 815 +G+ P+ YD S+ Sbjct: 1033 GQGSSFYFTLPILTGYDRSN 1052 >gi|17229375|ref|NP_485923.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130973|dbj|BAB73582.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1194 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/258 (27%), Positives = 140/258 (54%), Gaps = 12/258 (4%) Query: 563 EWKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 E ++ ++ A+K E++ S +KS+FLA +SHE+RTPL +++ ++++ + Sbjct: 499 EVARKNQEIEKARKFIEEKAEQLALSSRYKSEFLANMSHELRTPLNSLLILAKLLADNSS 558 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L N + +EY+ I +G +L+++ND+LD++KIESG +++ EP+ + Sbjct: 559 GNLSN-KQVEYSQTIYSAGTDLLELINDILDLAKIESGTLSVELEPIDFADLHDYIKRTF 617 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTH 731 Q A +K + +P IL+D + ++QI N+L+NA FT GG +I + + Sbjct: 618 QQVAQDKGLSFSIERDERLPSTILSDPKRLQQILKNLLANAFKFTEQGGVNLRIGLDQIN 677 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 T++ + + DTG+G+ + + + F Q+ + + GTGLGL +++ + G+ Sbjct: 678 TNHPMITFAISDTGIGIPQEKQQIIFEAFQQVDGTTSRKYGGTGLGLSISRELAQMLGGR 737 Query: 792 FYIFSTPAKGTLIEIIFP 809 + S P +G+ + P Sbjct: 738 LGLVSQPGQGSTFTLYLP 755 >gi|152964304|ref|YP_001360088.1| PAS/PAC sensor signal transduction histidine kinase [Kineococcus radiotolerans SRS30216] gi|151358821|gb|ABS01824.1| PAS/PAC sensor signal transduction histidine kinase [Kineococcus radiotolerans SRS30216] Length = 492 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 99/367 (26%), Positives = 170/367 (46%), Gaps = 32/367 (8%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM--NHYLT 514 +LE+T+DG +REG +L N AV +L D++ +P + + + L+ Sbjct: 139 LLESTTDGFLGTDREGQVLFANTAVRRLLRQRASDLVGRPLAQVGRRPADATLPDGPALS 198 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKL 571 ++L + + LS+++ + L LT+ D +E Sbjct: 199 DVLDGSGEGAGGGRAVLWDRYGTPLSVQVAVSPLITGEEVVGSVLTVRDATEQ------- 251 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN--PRYIEYANY 629 E+ K F A VSHE+RTPLTAI ++ + GPL R + A Sbjct: 252 -------ERVEELKRQFTAVVSHELRTPLTAIKASLRLVTSGVLGPLPEEPARLLRIA-- 302 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE---AVSEAISLVQLYANEKRILI 686 D + + + +VND+LD+ ++++G M L E V L + A E + + A + +L Sbjct: 303 -DENADRLAALVNDILDVERLDAGTMPLEPEDVDLADLARAGVEQLESTAVAAGVELVLG 361 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 A R+ AD + Q N++ NA+ F+ +GG++ ++ T+ E L VRD G Sbjct: 362 EVGPA----RVHADPHRIAQALTNLVGNAVKFSEAGGRVEVTCRRTARE-ARLAVRDEGR 416 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ + +LE F Q+ S R G+GLGL + K +V+ + G+ + S P +G+ + Sbjct: 417 GIPHDQLEAVFDRFRQVYASDAQRQSGSGLGLAITKGIVERSGGRVELRSRPNEGSEFTV 476 Query: 807 IFPLYDT 813 + PL D Sbjct: 477 VLPLTDA 483 >gi|189425738|ref|YP_001952915.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189421997|gb|ACD96395.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 827 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 126/243 (51%), Gaps = 8/243 (3%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L+ A+ A+ + +KS+FLA +SHEIR P+ +IG +++ RF L + + +Y + I Sbjct: 432 LTTARNAADAANQNKSEFLANMSHEIRNPMNGVIGMLQLL---RFTELTDEQK-DYLSAI 487 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + S + +L I+ND+LD+SKIE+GK+ L SL +++ + + A EK + + Sbjct: 488 ETSADDLLAIINDILDLSKIEAGKIELEISRFSLRRCINDVLLMQTSRAFEKGVQVEARL 547 Query: 691 ANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTGV 746 +P + D VKQ+ LN+L NA+ FT G I + N V + V DTG+ Sbjct: 548 DEQLPLEVYGDQLRVKQVLLNLLGNAVKFTEEGTISIEARLLQKQDDNSIVQITVSDTGI 607 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 GM+ L K PF Q R GTGLGL + + + + G+ S KG+ + Sbjct: 608 GMSPEVLGKVFDPFIQADVCTTRRFGGTGLGLTICRQLAELMGGRISATSEEGKGSQFYL 667 Query: 807 IFP 809 P Sbjct: 668 ELP 670 >gi|94313885|ref|YP_587094.1| two-component sensor response receiver component, histidine kinase [Cupriavidus metallidurans CH34] gi|93357737|gb|ABF11825.1| two-component sensor response receiver component, histidine kinase [Cupriavidus metallidurans CH34] Length = 1122 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 84/288 (29%), Positives = 140/288 (48%), Gaps = 11/288 (3%) Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 L++R++ M D++ +Q ++ L A A+ + KS FLA +SHEIRT Sbjct: 470 LTVRVVESTYQGKPAKLCAMDDVTAARQSESTLLQAIHDADAANRAKSAFLATMSHEIRT 529 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PL ++G E+++ + + + +S ++ I+ND+LD SKIE+G+M L Sbjct: 530 PLNGMLGSIELLEVSAL----DAAQRDQLEVMQQSAQSLIQIINDVLDFSKIEAGQMALQ 585 Query: 659 FEPVSLDEAVSEAISLVQLYANEK--RILIRTSFANNIPRILADLRSVKQIALNILSNAI 716 P +D V + A + ++L A + P IL D +Q+ N++SNAI Sbjct: 586 ARPCQIDSLVEDVCRRFAPDAERRSLQLLCVIDPALHAP-ILLDPLKTEQVLGNLVSNAI 644 Query: 717 HFTPSGGQIIISTTHT--SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 FT G ++ +TT T + + LRV DTG+G+ + ++ PF Q S R GT Sbjct: 645 KFTEQGKVVVEATTMTEGGRDWLKLRVIDTGIGIAIEDQQRLFAPFVQAEQSDSRRFGGT 704 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL--YDTSHPHDCI 820 GLGL + +V G + S P G+ ++ P+ + P D + Sbjct: 705 GLGLSICNRLVGLMNGSIRLVSEPGLGSCFDVRIPMEPVTVTQPADIV 752 >gi|298487166|ref|ZP_07005215.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158190|gb|EFH99261.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 1172 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 127/232 (54%), Gaps = 3/232 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ S +KS+FLA +SHE+RTPL + + ++++ + G +++A I +GN +L Sbjct: 488 QRASKYKSEFLANMSHELRTPLNSSLILAKLLA-ENPGENLTAEQVKFAESIYSAGNDLL 546 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++ND+LDISK+E+GK+ + E S+ V S+ Q A EK++ P +L Sbjct: 547 NLINDILDISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTML 606 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + ++QI N+LSNAI FT +G + + + ++ VRD+G+G+ + Sbjct: 607 FTDRQRLEQILKNLLSNAIKFTEAGA-VSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIF 665 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q + R GTGLGL +++ + G + S P +G++ ++ P Sbjct: 666 EAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLP 717 >gi|238786887|ref|ZP_04630688.1| Signal transduction histidine kinase [Yersinia frederiksenii ATCC 33641] gi|238725255|gb|EEQ16894.1| Signal transduction histidine kinase [Yersinia frederiksenii ATCC 33641] Length = 1054 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 134/247 (54%), Gaps = 9/247 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L+ AK+ A++ + KS FLA +SHEIRTPL +G E++ + Sbjct: 452 DVSAHAEMEKHLTWAKQAADEANDAKSTFLATMSHEIRTPLYGALGTLELLSLTQL---- 507 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N + +Y + I+ + ++L I++D+LDISKIE+G++ L + E V E A Sbjct: 508 NNQQRQYVDRIESASQMLLQIISDILDISKIEAGQLQLDKSEFNPRELVQECTGTYAGMA 567 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTS--NE 735 + K +L+ + A +IP R++ D ++QI N++SNAI FT G ++ +S S + Sbjct: 568 HRKGLLLFSIIATDIPERVIGDPARIRQILNNLISNAIKFTEIGTVVVRLSQLERSSLSA 627 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +L V D+GVG+ E EK PF I + + G G GLG+ + + + K + Sbjct: 628 KFLLEVCDSGVGIDKAEQEKLFTPFYMIDAERNMAG-GAGLGMSICARLAELMDTKIQLR 686 Query: 796 STPAKGT 802 S P G+ Sbjct: 687 SEPQIGS 693 >gi|156977333|ref|YP_001448239.1| histidine kinase [Vibrio harveyi ATCC BAA-1116] gi|156528927|gb|ABU74012.1| hypothetical protein VIBHAR_06119 [Vibrio harveyi ATCC BAA-1116] Length = 985 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/254 (32%), Positives = 129/254 (50%), Gaps = 10/254 (3%) Query: 571 LSHAK--KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 L+HAK K AE+ S KS FLA +SHEIRTP+ ++G + ++ + NP YA Sbjct: 454 LNHAKARKQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLIDSGL----NPMQKRYAE 509 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RSG +L I+ND+LD SKIE+G + + L + V + L+ A EK++L Sbjct: 510 IINRSGKTLLAILNDVLDYSKIEAGHLEIRSLGFDLHQMVEDTFQLMNGKAQEKKLLFSY 569 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGV 746 +++ R D+ + Q+ N++ NAI FT G I +S +V+ V DTG+ Sbjct: 570 HIESDVGRYWKGDVTRINQVLSNLVGNAIKFTEEGEIDIYVSLNPEDESQVLFEVSDTGI 629 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ + + F Q G GTGLGL +++ ++ A G + S G+ Sbjct: 630 GIAKKDKKTLFDAFTQAEGGMNQTG-GTGLGLAISRRIIQAMGGCLDVDSEEGHGSRFWF 688 Query: 807 IFPLYDTSHPHDCI 820 PL + S P + + Sbjct: 689 SIPL-EESEPVETV 701 >gi|29346391|ref|NP_809894.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|253568209|ref|ZP_04845620.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|29338286|gb|AAO76088.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides thetaiotaomicron VPI-5482] gi|251842282|gb|EES70362.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1472 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 76/248 (30%), Positives = 128/248 (51%), Gaps = 7/248 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG-FSEVIKNQRFGPLGNPRYIEYAN 628 K+ + I +K S K F +SHE+RTPLT I G E+ + + P G ++Y + Sbjct: 930 KMKNDIYIEQKVSEMKIKFFTNISHELRTPLTLIKGPIQELKEREELSPKG----LQYVD 985 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 ++++ N +L +VN +LD KI++GKM LH + +E ++ ++ + E I Sbjct: 986 LMEKNTNQMLQLVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEISFTF 1045 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVG 747 + + AD + + N++SNA FTPSGG I ++T T + + +RV D GVG Sbjct: 1046 QLPDEPIMVWADKDKLSIVIRNVISNAFKFTPSGGSIYVTTGLTDDGKSCYVRVEDNGVG 1105 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +L + + F Q N+ +GTG+GL L+K +V+ + G S +G + I+ Sbjct: 1106 IPQNKLSEIFERFSQGENANNPHYQGTGIGLALSKEIVNLHHGIIRAESPEGQGAVF-IV 1164 Query: 808 FPLYDTSH 815 L D H Sbjct: 1165 ELLLDKDH 1172 >gi|317485618|ref|ZP_07944494.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316923155|gb|EFV44365.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 845 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 87/286 (30%), Positives = 148/286 (51%), Gaps = 14/286 (4%) Query: 533 TKEEKLLSLRII-IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 T E++ + L + +K+ + Y +++ D + + + L A A++ ++ K DFL+R Sbjct: 271 TGEDRFMHLHLYPVKENAGTIRYVVSLSDRTHEVKTRQTLKDALASAQQANTAKRDFLSR 330 Query: 592 VSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 +SHEIRTP+ AIIG + + Q G R + + I S ++ ++ND+LD+SK Sbjct: 331 MSHEIRTPMNAIIGMATIAAAHIQNHG-----RVADCLHKISFSSKHLMSLLNDVLDMSK 385 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLV--QLYANEKRILIRTSFANNIPRILADLRSVKQI 707 IESGK+ +H E L + +S++ Q + + + S +++ D + QI Sbjct: 386 IESGKLAVHHEEFDLPNLIDSIVSIMYPQTESQGQHFSVALSGIEE-EKLVGDPLRINQI 444 Query: 708 ALNILSNAIHFTPSGGQIIISTTHT-SNEEVILR--VRDTGVGMTNYELEKAMKPFGQIP 764 LN+LSNA FTP GG I + + N V++R V DTG+G++ ++ KPF Q Sbjct: 445 LLNLLSNARKFTPEGGSIKLEVSQKRKNGGVLMRFTVSDTGIGLSEAFQKRLFKPFEQAD 504 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +S + GTGLGL + +V G + S +G+ + PL Sbjct: 505 SSISQKYGGTGLGLAITHNLVTLMNGTIGVRSKEHEGSCFTVELPL 550 >gi|294625970|ref|ZP_06704581.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599708|gb|EFF43834.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 969 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 127/241 (52%), Gaps = 8/241 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S K+ FLA + HE+RTP+T ++G SE++ +P Y I R Sbjct: 587 HKQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKT----TQDPTQRSYTESIRR 642 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--RILIRTSF 690 +G +L +VND LD+++IESG++ L F+P S+ + V+E +L+ A E+ R + Sbjct: 643 AGAHLLRLVNDALDLARIESGRLELDFQPFSVRQLVAEVEALMAPLAQERGLRFSLEIGL 702 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 +I D ++QI LN+L+NAI FT G + TT S + + V DTG G+ Sbjct: 703 LGDIT-ASGDSTRIRQILLNLLNNAIKFTERGVVALKLTTLGSYQGLRFEVADTGPGINA 761 Query: 751 YELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + + F Q ++ R G+GLGL + + + A G + S GT + P Sbjct: 762 EQKARLFQRFEQGDGAKTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTRFVVDLP 821 Query: 810 L 810 L Sbjct: 822 L 822 >gi|291570932|dbj|BAI93204.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 1057 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/270 (29%), Positives = 138/270 (51%), Gaps = 12/270 (4%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 F + + DI+E + +L+ + + K +FLA +SHE++TPLTA++G S + Sbjct: 315 FDKWWLIIAQDITEQYRVAQELTAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSSL 374 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 +K++ G L + R +YA I +SG ++ +VND+LD+++IE+G++ L E V++ Sbjct: 375 LKDKALGELSD-RQAKYAKLIHQSGRHLMMVVNDILDLTRIETGQLELTPEGVNIKTVCD 433 Query: 670 EAISLVQLYANEKRI------LIRTSFANNI----PRILADLRSVKQIALNILSNAIHFT 719 A+ V + I L F+ I I AD ++Q+ +N++SNA FT Sbjct: 434 RALEAVLHLHQQGDIKDSQSSLGSQKFSIEIEPGLETIEADELRLRQMLINLISNAFKFT 493 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 P GG + + + V+ V DTG+G+ + + F Q+ + + EGTGLGL Sbjct: 494 PDGGYMGLRVNRW-EDWVVFTVWDTGIGIPEQKQHLIFEKFQQLESPLNRQFEGTGLGLV 552 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L + + + G S KGT ++ P Sbjct: 553 LCQRLARLHGGDISFISHQRKGTEFTLLLP 582 >gi|282897782|ref|ZP_06305781.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] gi|281197461|gb|EFA72358.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] Length = 421 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 104/366 (28%), Positives = 178/366 (48%), Gaps = 40/366 (10%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE------------QNT 505 E G+A+++ G + NRA+ ++ GY D+L K T + Q Sbjct: 81 FENAGSGMALVSLNGYFIKVNRALCQILGYDSPDLLTKKVTEIITGEELLKDFDLAYQFI 140 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 + +Y E L + + L +SL + P + + DISE + Sbjct: 141 SGQITNYQVEKSCLHKSGKIIWVLLN-------VSLLSDVNGKPLHFIWQI--QDISE-Q 190 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 E +L K++F++ VSHE+RTPLTAI G E++ + PR E Sbjct: 191 HEVEQL-------------KNEFVSVVSHELRTPLTAIKGALEILATGIL--VDEPREAE 235 Query: 626 YANYIDRSGN-LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 I S + +L +VN++L++ ++SGKM L+ E ++ V +A+ VQ A +KR+ Sbjct: 236 QMLKIAVSNSERLLRLVNNILNLEMLDSGKMRLNLELCDINIMVKQAMETVQPIAQQKRM 295 Query: 685 LIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 I S + + +ILAD ++ Q+ N+LSN++ F+ +G ++ I T ++E+I+ V+D Sbjct: 296 EISYSTLDVHNSKILADEETIIQVLTNLLSNSVKFSHAGTKVEI-YTKMGDKEIIIAVKD 354 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 G G+ +L+ + F Q+ S + GTGLGL + K +V+ + GK +I ST G+ Sbjct: 355 YGKGIPADKLKTIFERFEQVDVSDARQNGGTGLGLAICKNIVEKHQGKIWIESTLDSGST 414 Query: 804 IEIIFP 809 P Sbjct: 415 FYFTLP 420 >gi|16761198|ref|NP_456815.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141108|ref|NP_804450.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|289830050|ref|ZP_06547499.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|17433762|sp|Q56128|RCSC_SALTI RecName: Full=Sensor protein rcsC; AltName: Full=Capsular synthesis regulator component C gi|25298510|pir||AD0790 sensor protein RcsC (EC 2.7.3.-) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503497|emb|CAD07502.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Typhi] gi|29136734|gb|AAO68299.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 948 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 131/258 (50%), Gaps = 7/258 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 445 DVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 504 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT G I+ + + Sbjct: 561 VRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG--CIVLHVRCDGDYLS 618 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 619 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 678 Query: 799 AKGTLIEIIFPLYDTSHP 816 G+ + PLY +P Sbjct: 679 GMGSQFTLRIPLYGAQYP 696 >gi|307252561|ref|ZP_07534456.1| hypothetical protein appser6_10770 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859966|gb|EFM91984.1| hypothetical protein appser6_10770 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 586 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 EK + KS +A +SHE+RTPL IIG S ++ G L + EY I+ S + Sbjct: 79 EKNNRDKSVLMATISHELRTPLNGIIGLSRILLE---GELTEQQR-EYLKTINISAVSLG 134 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-I 697 I +D++D+ KI+S ++ L + + + +S+ + L A + +I +++++P I Sbjct: 135 HIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLPNFI 194 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + QI N++SNA+ FTP+GG I +S N+ ++DTG+G+ +E K Sbjct: 195 YVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQRKVF 254 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 F Q NSQ+ + +G+G+GL ++K + G + S KG+ Sbjct: 255 AMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDLTLHSEMGKGS 299 >gi|323977583|gb|EGB72669.1| hsp90-like protein [Escherichia coli TW10509] Length = 605 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 95/398 (23%), Positives = 189/398 (47%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 226 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 285 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NTP + + +L L E + L + E Sbjct: 286 PAAEVITGYQRHELVGQPYSMLFD-NTP-----FYSPVLD-TLEHGTEHVALEISFPGRE 338 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 339 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 393 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q P+ + EY + + + + + ++ LL+ S+ Sbjct: 394 AHEVRNPLTAIRGYVQILRQQTSDPI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 449 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 450 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPISADRELLKQVLLNIL 505 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 506 INAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLSLQKKIFDPFF------TTKAS 559 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 560 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 597 >gi|269967809|ref|ZP_06181855.1| sensor protein TorS [Vibrio alginolyticus 40B] gi|269827585|gb|EEZ81873.1| sensor protein TorS [Vibrio alginolyticus 40B] Length = 895 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 125/247 (50%), Gaps = 9/247 (3%) Query: 571 LSHAK--KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 L+HAK K AE+ S KS FLA +SHEIRTP+ ++G + ++ + P+ YA Sbjct: 454 LNHAKARKQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLIDSGLNPIQK----RYAE 509 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RSG +L I+ND+LD SKIE+G + + L + V + L+ A EK++L Sbjct: 510 IINRSGKTLLAILNDVLDYSKIEAGHLEIRHMGFDLHQMVEDTFQLMNSRAQEKKLLFSY 569 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGV 746 +++ R D+ + Q+ N++ NAI FT G I +S +V+ V DTG+ Sbjct: 570 HIESDVSRYWKGDVTRISQVLNNLVGNAIKFTDEGEIDIYVSLNPEDESQVLFEVSDTGI 629 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ F Q G GTGLGL ++K +++A G + S G+ Sbjct: 630 GIAKKYQRTLFDAFTQAEGGMSQTG-GTGLGLAISKRIIEAMGGVLEVDSEEGNGSRFWF 688 Query: 807 IFPLYDT 813 PL ++ Sbjct: 689 SIPLEES 695 >gi|269137660|ref|YP_003294360.1| sensor histidine kinase/response regulator TorS [Edwardsiella tarda EIB202] gi|267983320|gb|ACY83149.1| sensor histidine kinase/response regulator TorS [Edwardsiella tarda EIB202] gi|304557723|gb|ADM40387.1| Sensor protein TorS [Edwardsiella tarda FL6-60] Length = 930 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 127/241 (52%), Gaps = 13/241 (5%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AE KS FLA +SHEIRTPL I+G ++++ Q P+ +P+ Y I+ Sbjct: 433 QARAEAENADRAKSAFLAAMSHEIRTPLHGILGTAQLLAEQ---PI-SPQSRGYVQAIND 488 Query: 633 SGNLVLDIVNDLLDISKIESGKMN--LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG +L ++ND+LD S IE+G + L+ EP S + + + L + E+ + + + Sbjct: 489 SGESLLAVLNDVLDYSAIEAGSSSVVLNDEPFSPRQLLDSLLRLAEGRLRERPLRLAHDY 548 Query: 691 ANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 A+ +P L D R ++QI +N+L+NA+ FT G +I + + V+D+G G+ Sbjct: 549 ADALPAWLQGDPRRIRQIVMNLLNNALRFTERG--VICVSCGCDETHWWIAVQDSGCGID 606 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + +PF Q+ R GTGLGL + + + A G + STP KG+ + P Sbjct: 607 PAQQAAIFQPFVQLSA----RRGGTGLGLAICRGLAQAMAGSLELSSTPGKGSRFCLRLP 662 Query: 810 L 810 L Sbjct: 663 L 663 >gi|254446207|ref|ZP_05059683.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198260515|gb|EDY84823.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 664 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/250 (33%), Positives = 130/250 (52%), Gaps = 15/250 (6%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KNQRFGPLGNPRYIEYANY 629 L A + A S K++FLA SHE+RTPL IIG+ E I + Q GP N + Sbjct: 267 LQEAMETANAASKAKTEFLATTSHELRTPLNPIIGYVEKIQRAQPNGPHSNDLRL----- 321 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I +S +L ++ D+LD S+IESG + L + + ++E + L+ A +K + + S Sbjct: 322 IKQSAEQLLRLIEDILDFSRIESGTLKLENDQIDVEELCESVVKLLSEQAEQKGLDLNYS 381 Query: 690 FANN----IPR--ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNE--EVILR 740 F N +P I D ++Q+ LN+ +NAI FT G I S H +E ++I+ Sbjct: 382 FNENRELGMPEKDISIDAGRLRQVLLNLTNNAIKFTNEGSVTIKCSLNHDPSEKADLIIE 441 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+G+ + + +K KPF Q+ +S G GLGL + + +V A G+ FS + Sbjct: 442 VIDTGIGIDSQDQDKLFKPFSQLDSSWTREYGGMGLGLAICQRIVKAMGGRLTCFSEIGR 501 Query: 801 GTLIEIIFPL 810 G+ P+ Sbjct: 502 GSRFSAQIPV 511 >gi|149375905|ref|ZP_01893672.1| PAS [Marinobacter algicola DG893] gi|149359785|gb|EDM48242.1| PAS [Marinobacter algicola DG893] Length = 1197 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/269 (30%), Positives = 134/269 (49%), Gaps = 15/269 (5%) Query: 553 CYSLTMHDISEWKQEKNKLS-------HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 C+ T D++E Q + +L K+ AE + K+ FLA +SHEIRTP+ AIIG Sbjct: 450 CFMATTIDVTEIVQREKELEVLNAELKEQKQEAESAVTVKTAFLANMSHEIRTPMNAIIG 509 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 ++ Q G +PR + + + +L ++ND+LD+SKIE+ + L P +D Sbjct: 510 V--LVLLQEAGLEDHPRRLVKKAF--SASEALLQLLNDILDLSKIEADHIELDIHPFDID 565 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG- 723 V ++ L + A EK + +R S P R+ DL + QI N++ NA+ FT GG Sbjct: 566 ALVHRSVDLFAIVAEEKGLKLRVSIDPTTPNRVAGDLLRISQICTNLVGNAVKFTRKGGI 625 Query: 724 QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 + I S LR V DTGVG+ + + + F Q S GTGLGL ++ Sbjct: 626 DVRIDYRAESQASGYLRIEVADTGVGIKPEDQGRVFENFRQADESTSRNFGGTGLGLAIS 685 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + D + + S +G+ +++ P+ Sbjct: 686 RRLADLMEAELTLKSDVGEGSTFQLLVPV 714 >gi|329132032|gb|AEB77977.1| GacS [Pseudomonas sp. Q12-87] gi|329132034|gb|AEB77978.1| GacS [Pseudomonas sp. Q13-87] gi|329132036|gb|AEB77979.1| GacS [Pseudomonas sp. Q7-87] gi|329132038|gb|AEB77980.1| GacS [Pseudomonas sp. Q86-87] Length = 203 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 124/205 (60%), Gaps = 8/205 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y I++S + +L I+N++ Sbjct: 3 KSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQLDYLGTIEKSADSLLGIINEI 58 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRTSFANNIPRILADLRS 703 LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ + + ++ D Sbjct: 59 LDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLSLVGDPLR 118 Query: 704 VKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 +KQI N++SNAI FT G + ++ H + ++ + ++DTG+G+++ ++ + F Sbjct: 119 LKQILTNLVSNAIKFTREGTIVARAMLEDEHEDSVQLRISIQDTGIGLSSQDVRALFQAF 178 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMV 785 Q NS + GTGLGL ++K +V Sbjct: 179 SQADNSLSRQPGGTGLGLVISKRLV 203 >gi|307247923|ref|ZP_07529957.1| hypothetical protein appser2_9100 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250179|ref|ZP_07532137.1| hypothetical protein appser4_9650 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306855573|gb|EFM87742.1| hypothetical protein appser2_9100 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857778|gb|EFM89876.1| hypothetical protein appser4_9650 [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 586 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 EK + KS +A +SHE+RTPL IIG S ++ G L + EY I+ S + Sbjct: 79 EKNNRDKSVLMATISHELRTPLNGIIGLSRILLE---GELTEQQR-EYLKTINISAVSLG 134 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-I 697 I +D++D+ KI+S ++ L + + + +S+ + L A + +I +++++P I Sbjct: 135 HIFSDIIDLEKIDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLPNFI 194 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + QI N++SNA+ FTP+GG I +S N+ ++DTG+G+ +E K Sbjct: 195 YVDNARLSQILWNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQRKVF 254 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 F Q NSQ+ + +G+G+GL ++K + G + S KG+ Sbjct: 255 AMFYQAENSQERKAQGSGIGLAISKRIAKLMGGDLTLHSEMGKGS 299 >gi|304407987|ref|ZP_07389637.1| multi-sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] gi|304343006|gb|EFM08850.1| multi-sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] Length = 608 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 103/389 (26%), Positives = 189/389 (48%), Gaps = 57/389 (14%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 QL S+L+ +GI +I+R G I+ +R ++ G +++ + +T +Q H Sbjct: 252 QLESVLDNMINGIIMIDRSGHIVLLSRRAEEILGISARELVGRHYTEARQQ-------HE 304 Query: 513 LTEILSLDLRQTLEKITLGSTK------EEKLLSLRII---IKKLPFSSCYSLTMHDISE 563 L+++++ + EK T + EE+LL L I+ K F L + D+S Sbjct: 305 LSQLIA----EAFEKQTYIHEEMTFYYPEERLLELNIVPMLQDKDDFVGVL-LVLQDVSA 359 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 ++ + +S+F+A VSHE++TP+ A+ GF+E + R Sbjct: 360 IRRLERM--------------RSEFVANVSHELKTPVAAVKGFAETLLGGAVNDEETARS 405 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 Y D S L ++ D+L++SKIES ++ L PV +D ++ + L++ AN KR Sbjct: 406 FLQIIY-DESERLN-RLIGDILELSKIESRRVPLMLSPVEMDSFAAKTVQLMEAEANRKR 463 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST----------THTS 733 I + + I + AD ++QI +N+LSN I++TP GG++ ++ + + Sbjct: 464 ITLELKADDEIY-VEADEDRLRQIMMNLLSNGINYTPEGGKVTVTVEPVWPASTGRSLLT 522 Query: 734 NEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 +EE + + ++DTG+G+ +L + + F ++ ++ GTGLGL + K +V+ Sbjct: 523 DEERDDYDRIRITIKDTGIGIPKKDLPRIFERFYRVDKARSRSSGGTGLGLSIVKHLVEM 582 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + G + S GT I P+ HP Sbjct: 583 HNGSIAVESEVGVGTKFIIELPVL---HP 608 >gi|294649346|ref|ZP_06726778.1| histidine kinase [Acinetobacter haemolyticus ATCC 19194] gi|292824786|gb|EFF83557.1| histidine kinase [Acinetobacter haemolyticus ATCC 19194] Length = 937 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 90/279 (32%), Positives = 153/279 (54%), Gaps = 26/279 (9%) Query: 526 EKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLS----------- 572 + I + ST E +LL I ++K+L FS L + + +E +E + + Sbjct: 219 QHIVVNSTGELRLLQRDIANVVKRLHFSF---LELKEHTEQTEEDLRRTLDTLEVQNITY 275 Query: 573 -HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 A+ A + KS FLA +SHE+RTPL +I GF ++ Q+ L N + + Y I Sbjct: 276 RQARDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLSNEQNL-YLQTIR 332 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 +S +L ++N++LD SKI++GK+ L P L+EA+ + + ++ A +K I + +A Sbjct: 333 KSSAHLLALINNVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINMAFYYA 392 Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--EVILR--VRDTGV 746 NIP+ ++ D KQI N++SNAI FTP G+II+ ++ + +L V+D+G+ Sbjct: 393 ENIPQHVVGDALRFKQILTNLISNAIKFTPD-GEIIVRVRMEDDDIGQCLLHFSVQDSGI 451 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 G++ + +K + F Q S + GTGLGL ++K +V Sbjct: 452 GLSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLV 490 >gi|254409902|ref|ZP_05023682.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196182938|gb|EDX77922.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1258 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/255 (29%), Positives = 128/255 (50%), Gaps = 32/255 (12%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 + +A + KS+FLA +SHEIRTP+ +IG + ++ + + + E+ I SG Sbjct: 538 RDVALAATRAKSEFLATMSHEIRTPMNGVIGMTGLLLDTQL----TSQQQEFVTTIRHSG 593 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 + +L I+ND+LD SKIESGK+ L L + + L+ A++K + + Sbjct: 594 DTLLTIINDILDFSKIESGKLELEEVSFDLQVCIENCLDLLAAKASDKNLELAYQITPQT 653 Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS------------------------- 728 PR I+ D+ ++QI +N+LSNA+ FT S G++I+S Sbjct: 654 PRMIIGDVTRLRQILVNLLSNAVKFTQS-GEVIVSVNAEKLDYEQWERPETKTSLTPRIT 712 Query: 729 -TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + T + + V+DTG+G+ L + +PF Q+ +S + GTGLGL + K + + Sbjct: 713 PSVATPHYRIQFAVKDTGIGIPPERLNRLFQPFSQVDSSTTRKYGGTGLGLAICKQLCEM 772 Query: 788 NMGKFYIFSTPAKGT 802 G ++ S G+ Sbjct: 773 MGGTMWVESQEDIGS 787 >gi|83643847|ref|YP_432282.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83631890|gb|ABC27857.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 830 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/250 (31%), Positives = 129/250 (51%), Gaps = 13/250 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E + KL AK+ AE + KS FLA +SHEIRTP+ I+G E++ + + + Sbjct: 164 AELAETNRKLLEAKEAAESANEAKSLFLATMSHEIRTPMNGILGMLELLSHSQL----SA 219 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + + + S +L+I+ND+LD SKIE+G+M L +S++E + V AN+ Sbjct: 220 EQTKMISTVRDSAFSLLNILNDILDFSKIEAGRMELENITLSVEEIIEGVAETVAASANK 279 Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------HTSN 734 + + + +IP ++ D ++QI N+ SNA FT + + T H++ Sbjct: 280 RNLHLHCYVDPDIPDALVGDEVRLRQILFNLCSNATKFTDTANGLQGCVTLRADLLHSAG 339 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + +R V+D G+GM L+K PF Q +S R GTGLGL + K + + G Sbjct: 340 QLYSIRISVKDNGIGMDQVTLDKLFSPFTQGESSTTRRYGGTGLGLSICKRLTEIMGGAI 399 Query: 793 YIFSTPAKGT 802 + S P +GT Sbjct: 400 EVASEPGQGT 409 >gi|320328955|gb|EFW84954.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 1170 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 127/232 (54%), Gaps = 3/232 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ S +KS+FLA +SHE+RTPL + + ++++ + G +++A I +GN +L Sbjct: 488 QRASKYKSEFLANMSHELRTPLNSSLILAKLLA-ENPGENLTAEQVKFAESIYSAGNDLL 546 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++ND+LDISK+E+GK+ + E S+ V S+ Q A EK++ P +L Sbjct: 547 NLINDILDISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTML 606 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + ++QI N+LSNAI FT +G + + + ++ VRD+G+G+ + Sbjct: 607 FTDRQRLEQILKNLLSNAIKFTEAGA-VSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIF 665 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q + R GTGLGL +++ + G + S P +G++ ++ P Sbjct: 666 EAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLP 717 >gi|313681453|ref|YP_004059191.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] gi|313154313|gb|ADR32991.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] Length = 1088 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 131/237 (55%), Gaps = 16/237 (6%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K+ A + S KS FLA +SHEIRTPL I+GF+E++K+ + E+ + I++S Sbjct: 393 KQYAMEASEAKSMFLANMSHEIRTPLNGIVGFTELLKDTEL----HDEQREFIDIIEKSS 448 Query: 635 NLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 +L+I+N++LD+SKIES K+ + F P+ DE S A+ + + A+EK I + Sbjct: 449 ENLLEIINNILDLSKIESNKLEIEEIVFNPI--DEFES-AVEVYGVRASEKHIDLACYVD 505 Query: 692 NNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EVILRVRDTG 745 ++ R L D +K++ +N+LSNA+ FT SGG I + E + +V+D G Sbjct: 506 PSLERPLKGDPTKIKEVIINLLSNAVKFTNSGGAISVDIRRIECEILNRTRIRFQVKDNG 565 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+T+ + + + F Q S + GTGLGL ++ V+ K + S P GT Sbjct: 566 IGVTSEQRSRIFEAFSQADTSITRKYGGTGLGLTISSRFVELMGSKLDLESEPGNGT 622 >gi|291539873|emb|CBL12984.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Response regulator receiver domain [Roseburia intestinalis XB6B4] Length = 421 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/261 (30%), Positives = 134/261 (51%), Gaps = 10/261 (3%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 ++ L + D ++ + + AK E+ + K++FL+R+SHEI+TP+ I+G + + Sbjct: 11 IAALVGLFLFDTVRLRRMQVQRDAAK---EEVAEVKTEFLSRISHEIKTPMNVIVGATAL 67 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + P R E N I + ++ ++NDL+D+SKIE+GK +LH +P S E ++ Sbjct: 68 GLEETEHP---ERMEECLNRIRGASEFLMGLLNDLVDMSKIENGKFHLHPKPYSFTEFLN 124 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS- 728 E ++++ K I ++ D QI N+LSNA+ FTP GG++ Sbjct: 125 EVENMMEPMCERKWIRFHMPHEEININMMVDPVRFFQIFFNLLSNAVKFTPEGGEVTFRI 184 Query: 729 ---TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 TH + V D G+GM+ + +PF Q +Q RG G GLGL + +++V Sbjct: 185 CNYATHNNQFCADYVVSDNGMGMSEEFQQILFQPFTQESVNQGERGNGAGLGLAIVRSIV 244 Query: 786 DANMGKFYIFSTPAKGTLIEI 806 D G + S P KGT I++ Sbjct: 245 DLMGGTITVKSEPQKGTEIKV 265 >gi|313682906|ref|YP_004060644.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] gi|313155766|gb|ADR34444.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] Length = 722 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 130/237 (54%), Gaps = 9/237 (3%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK+ A + KS+FLA +SHEIRTPL ++IGFS++++ + + P+ ++Y + I Sbjct: 235 LKMAKEEAVSANQLKSEFLANMSHEIRTPLNSVIGFSDLLEQE----VKEPKQVQYLHAI 290 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 G +L ++N++LD+SKIESG M + P+ + E +++ +K + + Sbjct: 291 KNGGKALLSLINNILDLSKIESGHMKVELHPLHFKPFLREIMNMFIEPGKKKGLEVTYEI 350 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE---EVILRVRDTG 745 N+P I+AD ++QI N++SNAI FT G ++ + +T + NE ++I ++DTG Sbjct: 351 EKNLPEWIIADEIRIRQILFNLISNAIKFTEKGSVRLSVLSTPSKNEGFVDLIFSIKDTG 410 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++ K F Q + GTGLGL + + + G I S +G+ Sbjct: 411 IGISPKNQIKIFDAFIQNDGQDSRQFGGTGLGLAICRKLAQLMKGDITIESQLGQGS 467 >gi|301310625|ref|ZP_07216564.1| probable hybrid sensory kinase [Bacteroides sp. 20_3] gi|300832199|gb|EFK62830.1| probable hybrid sensory kinase [Bacteroides sp. 20_3] Length = 793 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/274 (29%), Positives = 139/274 (50%), Gaps = 15/274 (5%) Query: 549 PFSSCYSLTMHDISEWKQEKNKLS-------HAKKIAEKESSHKSDFLARVSHEIRTPLT 601 P + + DI+E ++ + KL A K AE+ + KSDFLAR+SH+IRTP+ Sbjct: 238 PIYLIVYINITDITEQRELQKKLEKQSKQLKEALKSAEQANQAKSDFLARMSHDIRTPMN 297 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 AI+G + + K + R ++ I+ + L+L ++N++LD+SKIESG++ L + Sbjct: 298 AIMGMATIAKAH---VDEHERILDCMEKINGASKLLLSLINEVLDMSKIESGRLILSEDE 354 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTP 720 ++ E + + + ++Q K+ + N + D + +KQ+ +NILSNAI +TP Sbjct: 355 FNVGELLQDLVVMMQPEIKNKQQTLNIHVKNLRHENVKGDTQRIKQVLMNILSNAIKYTP 414 Query: 721 SGGQIIIS----TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 G+I I H D G GM L+K +PF + + + R +GTGL Sbjct: 415 ENGRITIEIYEKAPHNGIGNYQFVFEDNGRGMKPEFLDKIFEPFERASDDEIKRIQGTGL 474 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 G+ ++ ++ G + S KG+ I PL Sbjct: 475 GMSISHKIIQMMGGDIKVESEYGKGSRFTIDMPL 508 >gi|298375360|ref|ZP_06985317.1| hybrid sensory kinase [Bacteroides sp. 3_1_19] gi|298267860|gb|EFI09516.1| hybrid sensory kinase [Bacteroides sp. 3_1_19] Length = 793 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/277 (29%), Positives = 141/277 (50%), Gaps = 21/277 (7%) Query: 549 PFSSCYSLTMHDISEWKQEKNKLS-------HAKKIAEKESSHKSDFLARVSHEIRTPLT 601 P + + DI+E ++ + KL A K AE+ + KSDFLAR+SH+IRTP+ Sbjct: 238 PIYLIVYINITDITEQRELQKKLEKQSKQLKEALKSAEQANQAKSDFLARMSHDIRTPMN 297 Query: 602 AIIGFSEVIK---NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 AI+G + + K ++R R ++ I+ + L+L ++N++LD+SKIESG++ L Sbjct: 298 AIMGMATIAKAHVDER------ERILDCMEKINGASKLLLSLINEVLDMSKIESGRLILS 351 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIH 717 + ++ E + + + ++Q K+ + N + D + +KQ+ +NILSNAI Sbjct: 352 EDEFNVGELLQDLVVMMQPEIKNKQQTLNIHVKNLRHENVKGDTQRIKQVLMNILSNAIK 411 Query: 718 FTPSGGQIIISTT----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 +TP G+I I H D G GM L+K +PF + + + R +G Sbjct: 412 YTPENGRITIEIYEKDPHNGIGNYQFVFEDNGRGMKPEFLDKIFEPFERASDDEIKRIQG 471 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 TGLG+ ++ ++ G + S KG+ I PL Sbjct: 472 TGLGMSISHKIIQMMGGDIKVESEYGKGSRFTIDMPL 508 >gi|240278708|gb|EER42214.1| sensor histidine kinase/response regulator [Ajellomyces capsulatus H143] Length = 2390 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 132/255 (51%), Gaps = 14/255 (5%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H K+ E + KS FLA VSH++RTP+ +IG SE++K + Y I Sbjct: 1867 HNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLSELLKKTNL----DREQDGYVESIRV 1922 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 + +L ++ND+LD SK+E+GKM + P++L E ++E + ++ Y + R L + Sbjct: 1923 CADTLLTLINDILDFSKLEAGKMKVSTVPLNLRETIAEVVRALR-YTHRDRGLQTIEDLD 1981 Query: 693 NIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGV 746 + +L D + QI +N+LSN+ FTP G + + ++ + +V DTG+ Sbjct: 1982 GVDPNLLVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVKAKAADEDDGRIRITCKVADTGI 2041 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLIE 805 G++ +L + +PF Q +S G+GLGL + KA++ D GK ++ S GT Sbjct: 2042 GISGEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEEGVGT--T 2099 Query: 806 IIFPLYDTSHPHDCI 820 + F L + P + + Sbjct: 2100 VTFTLVLSKAPKNAV 2114 >gi|227538418|ref|ZP_03968467.1| sensor histidine kinase/response regulator fusion protein [Sphingobacterium spiritivorum ATCC 33300] gi|227241700|gb|EEI91715.1| sensor histidine kinase/response regulator fusion protein [Sphingobacterium spiritivorum ATCC 33300] Length = 1138 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 130/233 (55%), Gaps = 3/233 (1%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 E+ S +KS+F+A +SHE+RTPL +I+ ++++K+ + L N I+YA I +G+ + Sbjct: 477 VEQASKYKSEFMANMSHELRTPLNSILILAKLLKDNKHHNL-NTDQIKYATVIHSAGSDL 535 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696 L ++N+LLD++KIESG+++L + + + L ++ A EK I +T+ P Sbjct: 536 LHLINELLDLAKIESGQIDLVEDHIDIHSLTRNIEGLFRISAEEKSINFKTTIDPEAPST 595 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 L D ++Q+ N+LSNA FT +GG+I ++ H N + V+D G+G+ + + Sbjct: 596 FLCDEYRLEQVLKNLLSNAFKFTLNGGKIELAYKHV-NSNIHFIVQDDGIGIAPEKQKLI 654 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q S + GTGLGL + + + G+ + S P KG+ I P Sbjct: 655 FEAFKQEDGSTSRKYGGTGLGLSICRELATLLGGRISLESEPDKGSTFTFILP 707 >gi|239833142|ref|ZP_04681471.1| histidine kinase [Ochrobactrum intermedium LMG 3301] gi|239825409|gb|EEQ96977.1| histidine kinase [Ochrobactrum intermedium LMG 3301] Length = 882 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 101/358 (28%), Positives = 177/358 (49%), Gaps = 15/358 (4%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT-----VFLEQNTPSVMNHY 512 L+ ++ +A+ +G I +N + + L+ P+ I+ + E+ + + + Sbjct: 523 LDHLAEAVAVFGSDGRIRLSNPSFADLWALPMPLIVEGTHISSIAKICSERGGNGLWDDF 582 Query: 513 LTEILS-LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 ++ + LD R +G + + L + LP LT D+++ + + L Sbjct: 583 VSTVTGFLDKRDG----RMGQVELDDGTILSFAVVPLPKGQTM-LTFIDVTDTVRVERAL 637 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 + E K+DF+ VS+E+R+PLT IIGF+E+++ FG L N R IEY ++I Sbjct: 638 KEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL-NERQIEYLDHIS 696 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 S +++L IVND+LD++ +++G M L VS+ EA+S A + V + I + A Sbjct: 697 TSSSVLLTIVNDILDLATVDAGIMELEVGEVSVVEAISAAAARVGERMRDHDIGLDIDIA 756 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 +++ AD V+Q+ N+LSNA ++ P G I + + E++ V D G GM Sbjct: 757 DDVDVFKADANRVRQVLFNLLSNATNYAPEGSSIRLQVAREGS-EIVFAVHDDGPGMPGE 815 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L+ K F PN + G GLGL + K+ V+ + G I + +GT + FP Sbjct: 816 VLDTVFKRFQSYPNGGRR--RGAGLGLAIVKSFVELHGGSVDIDTGSGRGTTVICRFP 871 >gi|186686366|ref|YP_001869562.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186468818|gb|ACC84619.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 807 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/261 (31%), Positives = 139/261 (53%), Gaps = 29/261 (11%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 E+ +L +K A+ + KS+FLA +SHE+RTPL I+G ++++ P + + + Sbjct: 322 EQRELKKSKAAADTANHAKSEFLANMSHELRTPLNGILGCAQILLR---SPALPKQELYH 378 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 N I++ G+ +L ++ND+LD+SKIE+ K+ L+ + V + + + + A +K IL Sbjct: 379 VNIIEQCGSHLLTLINDILDLSKIEAKKLELYPDDVHFPSFLQGIVEICHIRAKQKGILF 438 Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR----- 740 N+P I D++ ++Q+ LN+L NAI FT GQ+ T N EVI R Sbjct: 439 VYKPGINLPTGIHVDVKRLRQVLLNLLGNAIKFTDE-GQV------TFNIEVIDRAPNDV 491 Query: 741 ----------VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 V DTG+G+T EL + PF Q+ ++ + EGTGLGL + + +V Sbjct: 492 QIIKHRLRFTVEDTGIGITPVELSQIFLPFEQVGEKKR-QAEGTGLGLAITRQLVQMMGS 550 Query: 791 KFYIFSTPAKGT--LIEIIFP 809 ++ S +G+ L E+ P Sbjct: 551 DIHVHSQIGQGSSFLFELEIP 571 >gi|154491811|ref|ZP_02031437.1| hypothetical protein PARMER_01432 [Parabacteroides merdae ATCC 43184] gi|154088052|gb|EDN87097.1| hypothetical protein PARMER_01432 [Parabacteroides merdae ATCC 43184] Length = 628 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 131/245 (53%), Gaps = 7/245 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q + +L K+ AE+ + KS FLA +SHEIRTPL AI+GF+ ++++++ L + Sbjct: 387 RQVQLRLIEEKERAEEANKMKSAFLANMSHEIRTPLNAIVGFTNLLQDEK--ELTDEEKD 444 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + N I+++ NL+L ++ND+L++S+IESG+M+ F+ SL+E + E L I Sbjct: 445 LFRNTINKNSNLLLKLINDILELSRIESGRMSFAFDDCSLNELLEEIYQTHHLLM-PSNI 503 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 F I D Q+ N ++NA+ FT G ++ + +EV + V DT Sbjct: 504 RFLKEFQETELIIHVDRFRFTQVITNFINNAVKFTTKGHILLGAVYKKEEKEVHVFVEDT 563 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G GM+ +K + F ++ Q GTGLGL + + + + G+ + S KG+ Sbjct: 564 GKGMSEEAQKKVFERFFKVDEFAQ----GTGLGLSICQTIAERLEGRITLSSQEGKGSRF 619 Query: 805 EIIFP 809 +I P Sbjct: 620 TLIIP 624 >gi|150007414|ref|YP_001302157.1| two-component hybrid sensor kinase/response regulator [Parabacteroides distasonis ATCC 8503] gi|149935838|gb|ABR42535.1| two-component system sensor histidine kinase, with response regulator receiver domain [Parabacteroides distasonis ATCC 8503] Length = 793 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/277 (29%), Positives = 141/277 (50%), Gaps = 21/277 (7%) Query: 549 PFSSCYSLTMHDISEWKQEKNKLS-------HAKKIAEKESSHKSDFLARVSHEIRTPLT 601 P + + DI+E ++ + KL A K AE+ + KSDFLAR+SH+IRTP+ Sbjct: 238 PIYLIVYINITDITEQRELQKKLEKQSKQLKEALKSAEQANQAKSDFLARMSHDIRTPMN 297 Query: 602 AIIGFSEVIK---NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 AI+G + + K ++R R ++ I+ + L+L ++N++LD+SKIESG++ L Sbjct: 298 AIMGMATIAKAHVDER------ERILDCMEKINGASKLLLSLINEVLDMSKIESGRLILS 351 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIH 717 + ++ E + + + ++Q K+ + N + D + +KQ+ +NILSNAI Sbjct: 352 EDEFNVGELLQDLVVMMQPEIKNKQQTLNIHVKNLRHENVKGDTQRIKQVLMNILSNAIK 411 Query: 718 FTPSGGQIIISTT----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 +TP G+I I H D G GM L+K +PF + + + R +G Sbjct: 412 YTPENGRITIEIYEKDPHNGIGNYQFVFEDNGRGMKPEFLDKIFEPFERASDDEIKRIQG 471 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 TGLG+ ++ ++ G + S KG+ I PL Sbjct: 472 TGLGMSISHKIIQMMGGDIKVESEYGKGSRFTIDMPL 508 >gi|78221237|ref|YP_382984.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter metallireducens GS-15] gi|78192492|gb|ABB30259.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter metallireducens GS-15] Length = 763 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 100/379 (26%), Positives = 187/379 (49%), Gaps = 43/379 (11%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 +++E+ +L +IL ++GIA+ +REG ++ N A ++F E P Sbjct: 412 LQMEMGRLEAILTGMAEGIAVTDREGKVILFNPAAQRIF----------------EMVPP 455 Query: 507 SVMNHYLTEILS-------LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559 VM H L E+ + D +T+++ + + + +S++ KKL S Sbjct: 456 RVMGHTLEELCAGGEFCALADYVRTMKETDDLTPRRDVEMSMKG--KKLTIS-------- 505 Query: 560 DISEWKQEKNKLS----HAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 +S + + L+ + + +E K++F++ VSHE++TPLT+I G + I ++ Sbjct: 506 -LSPFCDQGGALAGVVMSVRDVTGEEDVDRVKTEFISTVSHELKTPLTSIKGSLQFIHDR 564 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G G + + R+ + ++ +VND+LDI++IESG++ EP + V+ +I Sbjct: 565 GEGFGGMEGEL--LSVCLRNTDRLIRLVNDILDIARIESGRLEFVPEPQDVRTLVTHSIE 622 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + YA E + + ++P I D + Q+ N+LSNAI F+P G +++++ TS Sbjct: 623 ELAGYALEHDVSVENRCGQDLPPIYGDRDRLVQVLTNLLSNAIKFSPRGERVVVTAERTS 682 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 N V + V D G + + K K F + NS + + GTGLGL + K +V+ + G+ + Sbjct: 683 N-YVAISVGDRGREILWSDRGKLFKKFQLLDNSDRRQHGGTGLGLAICKEIVEHHHGRIF 741 Query: 794 IFSTPAKGTLIEIIFPLYD 812 G + P+Y+ Sbjct: 742 YNEGTGGGNVFTFTVPVYE 760 >gi|323498994|ref|ZP_08103976.1| sensor protein TorS [Vibrio sinaloensis DSM 21326] gi|323315930|gb|EGA68959.1| sensor protein TorS [Vibrio sinaloensis DSM 21326] Length = 959 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 131/243 (53%), Gaps = 11/243 (4%) Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 +HA+++AE+ S KS FLA +SHEIRTP+ ++G + +++++ N + Y + I+ Sbjct: 457 AHARQLAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDEGL----NKQQAYYVDVIN 512 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD--EAVSEAISLVQLYANEKRILIRTS 689 RSG+ +L I+ND+LD SKIE+G +L PV D V + L+ A EK + + Sbjct: 513 RSGSTLLAILNDVLDYSKIEAG--HLEIRPVDFDLRAMVEDVEQLLHGRATEKHLQLSCL 570 Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVG 747 + + R D+ + Q+ N++ NAI FT G I ++ V+ V D+G+G Sbjct: 571 VESELGRYWRGDMTRISQVLNNLVGNAIKFTDHGHVDIYVAEDPEQPGRVLFEVSDSGIG 630 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 ++ E + F Q +G GTGLGL ++K +V+A G+ + S+ +G+ Sbjct: 631 ISPSEQQNLFDAFTQASGGLSSKG-GTGLGLAISKKIVEAMGGELSLESSAGQGSRFWFS 689 Query: 808 FPL 810 PL Sbjct: 690 IPL 692 >gi|320324583|gb|EFW80660.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. B076] Length = 1170 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 127/232 (54%), Gaps = 3/232 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ S +KS+FLA +SHE+RTPL + + ++++ + G +++A I +GN +L Sbjct: 488 QRASKYKSEFLANMSHELRTPLNSSLILAKLLA-ENPGENLTAEQVKFAESIYSAGNDLL 546 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++ND+LDISK+E+GK+ + E S+ V S+ Q A EK++ P +L Sbjct: 547 NLINDILDISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTML 606 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + ++QI N+LSNAI FT +G + + + ++ VRD+G+G+ + Sbjct: 607 FTDRQRLEQILKNLLSNAIKFTEAGA-VSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIF 665 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q + R GTGLGL +++ + G + S P +G++ ++ P Sbjct: 666 EAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLP 717 >gi|298375623|ref|ZP_06985580.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] gi|298268123|gb|EFI09779.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] Length = 364 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 93/276 (33%), Positives = 141/276 (51%), Gaps = 16/276 (5%) Query: 537 KLLSLRIIIKKLPFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 K + L I+ L SS L M +DISE K + ++ A EK KS FLA +SHE Sbjct: 98 KWVRLDIMEAGLEKSSPILLLMNYDISELKAMEERMLKA----EKSERLKSSFLANISHE 153 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 IR PL AI+GFS ++ ++ G L EY N I + L+L IVND+LD++K+ESG M Sbjct: 154 IRMPLNAIVGFSSLLGDEEDGELRQ----EYINLIQTNNELLLGIVNDVLDLAKLESGTM 209 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 F L + + E ++ Q+ L + ++ + +D +KQ+ N ++NA Sbjct: 210 TFDFMEFDLRQLIVETVASFQIKVPRGVALTYPASLDSF-LLRSDRIRLKQVLGNFITNA 268 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 I +T S G II+S N EV+L V DTG GM+ F + N +Q G G Sbjct: 269 IKYT-SIGSIILSYQAMEN-EVLLSVTDTGEGMSEEIKLHVFDRFYKGRNQKQ----GIG 322 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 LGL + + +++ G+ + S KG+ P++ Sbjct: 323 LGLSICQNIIERLGGRIGVSSEQGKGSCFWCTLPIF 358 >gi|167842316|ref|ZP_02469000.1| periplasmic sensor hybrid histidine kinase [Burkholderia thailandensis MSMB43] Length = 809 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 84/289 (29%), Positives = 146/289 (50%), Gaps = 10/289 (3%) Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 + + +LR+ + + + D++ ++ + K+ A++ AE ++ KS FLA SHE Sbjct: 160 DTIAALRLTQARYQGKDVLVVALTDVTAERELQRKMLEARRAAESANAAKSAFLAATSHE 219 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 IRTPL I+G E++ PL + ++ N + ++G ++ ++ND+LD ++IESG+M Sbjct: 220 IRTPLHGILGNLELLGRT---PLSIDQ-LDRLNLVRQTGKHLVALINDILDFTRIESGEM 275 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSN 714 P + + ++ L A EK + + N ++ D ++QI N+LSN Sbjct: 276 WYERIPFDVFDVAERSLMLAAPSALEKSLALLCELRITNARMLIGDPNRIEQILRNLLSN 335 Query: 715 AIHFTPSGG-QIIISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 AI FT +G + + H E +++L V DTG+G++ + + F Q + R Sbjct: 336 AIKFTHTGKITLTLEVVHAEPESQDLVLSVTDTGIGISPEQQAHVFEAFRQADETIARRY 395 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 GTGLGL L K + G + STP G+ + PL +S P D I Sbjct: 396 GGTGLGLSLCKRFAEGMHGTLTLRSTPDIGSRFTVRIPL--SSAPADAI 442 >gi|295103591|emb|CBL01135.1| PAS domain S-box [Faecalibacterium prausnitzii SL3/3] Length = 1044 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/270 (30%), Positives = 144/270 (53%), Gaps = 23/270 (8%) Query: 556 LTMHDISEWKQEK----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-- 609 L D+S+ K+ + L A + AE S K++FL+ +SH+IRTP+ AIIG + + Sbjct: 502 LASMDVSQEKKAEIESHKALKDAYRAAENASRAKTEFLSNMSHDIRTPMNAIIGLTAIAG 561 Query: 610 --IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 I++Q R +E I +S +L ++N++LD+++IESG+M+L E SL E Sbjct: 562 ANIESQ-------DRVVECLGKITKSSRHLLGLINEVLDMARIESGRMSLAEEDFSLPEL 614 Query: 668 VSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 V ++L + +E + + + + D ++Q+ +N++SNA+ +TP GG I Sbjct: 615 VDNLLTLTKPAIDEHKHQLEVHVEHIEHEAVCGDSLRIQQVFVNLMSNAVKYTPDGGNIT 674 Query: 727 ISTTHTSNEEVIL-----RVRDTGVGMTNYELEKAM-KPFGQIPNSQQIRGEGTGLGLPL 780 ++ N L + D G+GMT E +K M +PF + + + + +GTGLG+ + Sbjct: 675 LTIKEKPNGFSELGCYEFSIEDNGIGMTP-EFQKIMFEPFSRADDHRTTKVQGTGLGMAI 733 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 A+ +V+ G + S P KGT I + L Sbjct: 734 ARNIVNLMNGNIQVESAPNKGTKITVTVYL 763 >gi|315037329|ref|YP_004030897.1| histidine kinase [Lactobacillus amylovorus GRL 1112] gi|312275462|gb|ADQ58102.1| putative histidine kinase [Lactobacillus amylovorus GRL 1112] Length = 595 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 99/373 (26%), Positives = 177/373 (47%), Gaps = 41/373 (10%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E +L S+L SDG+ +R G + N+ ED++ KP L Sbjct: 238 ERRRLDSVLSHMSDGVLATDRHGNVSVVNQMALNFLNVKEEDVINKPIAEVLG------- 290 Query: 510 NHYLTEILSLDLRQTLEKITLG---STKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEW 564 L + S DL + ++I + +T++E +L S +I + F S +HD++E Sbjct: 291 ---LKDTSSQDLISSQKEIVVTIDPNTRDEMILHASFSLIKRVTGFVSGSVCVLHDVTE- 346 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGNPRY 623 Q+KN E S K F++ VSHE+RTPLT++ + E + + P P++ Sbjct: 347 -QQKN-----------EDSQKQ-FVSNVSHELRTPLTSLQAYIEALNEGAWKDPNIAPKF 393 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 +E + + ++ ++NDLL +S+++ G + E V+L++ V+ ++ + + Sbjct: 394 LEVTQ---QETSRMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDK 450 Query: 684 IL-------IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 I+ N + D + Q+ NI++NAI ++P G I + T N Sbjct: 451 NNDKKKKYTIKRELGNQALWVEIDTDKMMQVIDNIMNNAIKYSPDGSVITVRLTQNKNH- 509 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 VIL + D G+G+ +L K F ++ ++ GTGLGL +AK +V+A+ G+ + S Sbjct: 510 VILSISDQGLGIPRKDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADS 569 Query: 797 TPAKGTLIEIIFP 809 + KG+ I P Sbjct: 570 SEGKGSTFYISLP 582 >gi|257094180|ref|YP_003167821.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046704|gb|ACV35892.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 1138 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 131/227 (57%), Gaps = 7/227 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K++FL+R+SHE+RTPL AI+GF +++ PL + + + I R+G +L+ VN++ Sbjct: 737 KTEFLSRMSHELRTPLNAILGFGQLLALPGDAPL-SAQQADNVQEILRAGRHLLEQVNEV 795 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+++IESG++ L E V L V+E ++LV+ A + + I + +++ + AD + Sbjct: 796 LDLARIESGRIELSLEAVPLSSVVAECVALVRPLAEARGVSIDAAIDDSM--LQADPTRL 853 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +Q+ LN+LSNAI + G + + T E + V D+G G+ + L + +PF ++ Sbjct: 854 RQVILNLLSNAIKYNREHGTVRLDNTR-EGERLRFAVTDSGRGIASEHLPRLFQPFERLE 912 Query: 765 NSQQIRG-EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +S + G EG+G+GL L+K +V+ G + S G+ PL Sbjct: 913 SSYE--GIEGSGVGLALSKRLVEMMAGSIRVDSRIGVGSTFSFDLPL 957 >gi|255013997|ref|ZP_05286123.1| two-component hybrid sensor kinase/response regulator [Bacteroides sp. 2_1_7] gi|256839663|ref|ZP_05545172.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|256738593|gb|EEU51918.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] Length = 793 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/277 (29%), Positives = 141/277 (50%), Gaps = 21/277 (7%) Query: 549 PFSSCYSLTMHDISEWKQEKNKLS-------HAKKIAEKESSHKSDFLARVSHEIRTPLT 601 P + + DI+E ++ + KL A K AE+ + KSDFLAR+SH+IRTP+ Sbjct: 238 PIYLIVYINITDITEQRELQKKLEKQSKQLKEALKSAEQANQAKSDFLARMSHDIRTPMN 297 Query: 602 AIIGFSEVIK---NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 AI+G + + K ++R R ++ I+ + L+L ++N++LD+SKIESG++ L Sbjct: 298 AIMGMATIAKAHVDER------ERILDCMEKINGASKLLLSLINEVLDMSKIESGRLILS 351 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIH 717 + ++ E + + + ++Q K+ + N + D + +KQ+ +NILSNAI Sbjct: 352 EDEFNVGELLQDLVVMMQPEIKNKQQTLNIHVKNLRHENVKGDTQRIKQVLMNILSNAIK 411 Query: 718 FTPSGGQIIISTT----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 +TP G+I I H D G GM L+K +PF + + + R +G Sbjct: 412 YTPENGRITIEIYEKDPHNGIGNYQFVFEDNGRGMKPEFLDKIFEPFERASDDEIKRIQG 471 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 TGLG+ ++ ++ G + S KG+ I PL Sbjct: 472 TGLGMSISHKIIQMMGGDIKVESEYGKGSRFTIDMPL 508 >gi|225568038|ref|ZP_03777063.1| hypothetical protein CLOHYLEM_04111 [Clostridium hylemonae DSM 15053] gi|225163134|gb|EEG75753.1| hypothetical protein CLOHYLEM_04111 [Clostridium hylemonae DSM 15053] Length = 1004 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 85/262 (32%), Positives = 134/262 (51%), Gaps = 18/262 (6%) Query: 563 EWKQEKNKLSH----------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 EW QE+ KL K A+ S K+DFL+R+SHEIRTP+ AI G + + K+ Sbjct: 595 EWTQEQRKLLKELVKIVPSFIMKSKADAVSRAKTDFLSRMSHEIRTPMNAISGMTTIAKS 654 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + ++ N I+ + +L ++ND+LD+S+IESGKM L++EPV L + + + Sbjct: 655 V---LDDRKKTMDCLNKIESANAYLLSLINDILDMSRIESGKMELNYEPVDLVQLMQKLE 711 Query: 673 SLVQLYANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 L + A EK + LI + + R+ AD + Q+ +NI+ NA+ FT G + Sbjct: 712 YLFKAQAEEKHLELIFVNEYSGGRRLNADSLRLNQVLVNIIGNALKFTGQGRITVRVEEL 771 Query: 732 TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 ++ +LR V DTG+G+ L + F Q + R GTGLGL ++ +V Sbjct: 772 EASPMAVLRFSVADTGIGIEPEALSRVFNAFEQADPATAARNGGTGLGLAISSRLVQMMG 831 Query: 790 GKFYIFSTPAKGTLIEIIFPLY 811 G S +G+ E F L+ Sbjct: 832 GTLEADSKVGEGS--EFFFTLH 851 >gi|46201637|ref|ZP_00054637.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 968 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/248 (33%), Positives = 126/248 (50%), Gaps = 11/248 (4%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 L+ AK+ AE + KS FLA +SHEIRTP+ +IG E++ + + + + Sbjct: 440 QALTIAKESAEAANVAKSAFLAAMSHEIRTPMNGVIGMIELLDHTEL----DSDQRDLVS 495 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 SG +L I++D+LD SKIE+G++ L EPV LD V + + A K + I T Sbjct: 496 TTRDSGLALLRILDDVLDFSKIEAGRLELEQEPVRLDRMVDSVVQTISPAAAAKSLSIST 555 Query: 689 SFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVR 742 + P +LAD ++QI N+ NA+ FT + G + I +E V +RV Sbjct: 556 FVDPGLPPLVLADPVRLRQILFNLAGNAVKFT-AQGLVAIHVGRCGTDEQGRVMVSIRVV 614 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ + ++ +PF Q +S R GTGLGL + + +VD G S P G+ Sbjct: 615 DTGIGIEDALRDRLFQPFTQAESSTTRRFGGTGLGLSITRRLVDLMDGTAGFESEPNVGS 674 Query: 803 LIEIIFPL 810 PL Sbjct: 675 SFWCRLPL 682 >gi|325262196|ref|ZP_08128934.1| putative hybrid sensory kinase [Clostridium sp. D5] gi|324033650|gb|EGB94927.1| putative hybrid sensory kinase [Clostridium sp. D5] Length = 860 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 131/236 (55%), Gaps = 17/236 (7%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEV----IKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 K+ FL+ +SH+IRTP+ AIIG +E+ I ++R R ++ + I SG+ +L + Sbjct: 345 KTRFLSSMSHDIRTPMNAIIGMTEIAVKHIDDRR-------RVLDCLDKITLSGSHLLTL 397 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILA 699 +ND+LDIS++ESG+M+LH SL E + +++V+ EK + N + A Sbjct: 398 INDVLDISQVESGRMSLHPVVFSLSECTTNLVNIVKPQIKEKGLEFDVHLHNLQYEYLYA 457 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVIL--RVRDTGVGMTNYELE 754 D + QI +N+L+NA+ +T GG+I++ T + VIL V+DTG+GM+ ++ Sbjct: 458 DELRMNQIFINLLTNAVKYTNPGGKIVLDLGETFLPEDSRVILTYTVQDTGMGMSKEFMK 517 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F + + + + +G+GLGL + + MVD G S P +GT + L Sbjct: 518 DMYQAFNRAVDPRIDKVQGSGLGLAITRQMVDLMNGTIECESEPGRGTKFTVTLAL 573 >gi|323212345|gb|EFZ97168.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] Length = 646 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 131/258 (50%), Gaps = 7/258 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 143 DVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 201 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 202 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 258 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P L D ++Q+ N+LSNAI FT G I+ + + Sbjct: 259 VRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG--CIVLHVRCDGDYLS 316 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + S P Sbjct: 317 IRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEP 376 Query: 799 AKGTLIEIIFPLYDTSHP 816 G+ + PLY +P Sbjct: 377 GMGSQFTLRIPLYGAQYP 394 >gi|257487872|ref|ZP_05641913.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 1170 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 127/232 (54%), Gaps = 3/232 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ S +KS+FLA +SHE+RTPL + + ++++ + G +++A I +GN +L Sbjct: 488 QRASKYKSEFLANMSHELRTPLNSSLILAKLLA-ENPGENLTAEQVKFAESIYSAGNDLL 546 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++ND+LDISK+E+GK+ + E S+ V S+ Q A EK++ P +L Sbjct: 547 NLINDILDISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTML 606 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + ++QI N+LSNAI FT +G + + + ++ VRD+G+G+ + Sbjct: 607 FTDRQRLEQILKNLLSNAIKFTEAGA-VSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIF 665 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q + R GTGLGL +++ + G + S P +G++ ++ P Sbjct: 666 EAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLP 717 >gi|330985282|gb|EGH83385.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 1170 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 127/232 (54%), Gaps = 3/232 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ S +KS+FLA +SHE+RTPL + + ++++ + G +++A I +GN +L Sbjct: 488 QRASKYKSEFLANMSHELRTPLNSSLILAKLLA-ENPGENLTAEQVKFAESIYSAGNDLL 546 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++ND+LDISK+E+GK+ + E S+ V S+ Q A EK++ P +L Sbjct: 547 NLINDILDISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTML 606 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + ++QI N+LSNAI FT +G + + + ++ VRD+G+G+ + Sbjct: 607 FTDRQRLEQILKNLLSNAIKFTEAGA-VSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIF 665 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q + R GTGLGL +++ + G + S P +G++ ++ P Sbjct: 666 EAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLP 717 >gi|312899665|ref|ZP_07758989.1| PAS domain S-box [Enterococcus faecalis TX0470] gi|311293171|gb|EFQ71727.1| PAS domain S-box [Enterococcus faecalis TX0470] Length = 609 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 96/370 (25%), Positives = 174/370 (47%), Gaps = 31/370 (8%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 ME E +L S+L +DG+ +R G +++ N L E+++ L+ Sbjct: 254 MEAERNRLDSVLTHMTDGVIATDRRGKVITINEMALSLLNVKNENVIGTSLLELLDIEED 313 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEK----LLSLRIIIKKLPFSSCYSLTMHDIS 562 + L E L + ++ S +EE + +I ++ F + +HD++ Sbjct: 314 YTLRKLLEEPDELLIDRST------SDREEDQMIIWVDFTMIRRESGFITGLVCVLHDVT 367 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E QEKN E+E + +F++ VSHE+RTPLT++ + E + G NP Sbjct: 368 E--QEKN---------ERE---RREFVSNVSHELRTPLTSMRSYIEALSE---GAWENPE 410 Query: 623 YI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN- 680 + + ++ ++NDLL++S+++SG +L E V+ +E ++ + + Sbjct: 411 IAPNFLKVTLEETDRMIRMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIEN 470 Query: 681 -EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 +K IR F + D V Q+ NIL+NAI ++P GG I T N V+ Sbjct: 471 EQKNYKIRREFTKRDLWVELDTDKVIQVLDNILNNAIKYSPDGGVITCRLVETHNN-VVF 529 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 + D G+G+ +L K + F ++ ++ GTGLGL ++K ++ A+ G ++ ST Sbjct: 530 SISDQGLGIPKKDLGKVFERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEG 589 Query: 800 KGTLIEIIFP 809 +G+ I P Sbjct: 590 EGSTFYISLP 599 >gi|289646781|ref|ZP_06478124.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. 2250] Length = 1172 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 127/232 (54%), Gaps = 3/232 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ S +KS+FLA +SHE+RTPL + + ++++ + G +++A I +GN +L Sbjct: 488 QRASKYKSEFLANMSHELRTPLNSSLILAKLLA-ENPGENLTAEQVKFAESIYSAGNDLL 546 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++ND+LDISK+E+GK+ + E S+ V S+ Q A EK++ P +L Sbjct: 547 NLINDILDISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTML 606 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + ++QI N+LSNAI FT +G + + + ++ VRD+G+G+ + Sbjct: 607 FTDRQRLEQILKNLLSNAIKFTEAGA-VSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIF 665 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q + R GTGLGL +++ + G + S P +G++ ++ P Sbjct: 666 EAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLP 717 >gi|99082586|ref|YP_614740.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040] gi|99038866|gb|ABF65478.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040] Length = 1096 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/253 (29%), Positives = 119/253 (47%), Gaps = 6/253 (2%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN- 620 +E ++ ++ E+ K FLA SHE+RTPL IIG E ++ G +G+ Sbjct: 415 AELQENLRQIGEKNAKLEEADRMKDRFLANTSHELRTPLNGIIGILETLEG---GAMGDM 471 Query: 621 -PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P I S + +V+DLLDI +I G+M L +PV A+ + L+Q Sbjct: 472 LPAQASQLRLITFSARRLSRLVDDLLDIYRIREGRMRLDLQPVDASHALRNVLQLLQPTF 531 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 ++P + AD +QI N+LSNA+ + G ++ I+ + V L Sbjct: 532 QVDPAKFHVDLPGDLPALTADPVRFEQILFNLLSNAVKYG-GGSEVYITAEERPSGHVAL 590 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 +RD G G+ +E+ P Q+ + GTGLGL +A+ + D G + STP Sbjct: 591 AIRDHGPGIAADSMERIFHPLEQLMPDGSGQATGTGLGLTIARHLADLMAGSIEVSSTPG 650 Query: 800 KGTLIEIIFPLYD 812 +G+ ++ PL D Sbjct: 651 EGSEFRVVLPLSD 663 >gi|186895282|ref|YP_001872394.1| histidine kinase [Yersinia pseudotuberculosis PB1/+] gi|186698308|gb|ACC88937.1| histidine kinase [Yersinia pseudotuberculosis PB1/+] Length = 1342 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 137/256 (53%), Gaps = 11/256 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DIS+ K + +L A+ AE + KS FLA +SHE+RTP+ AI+G E+ I++ R Sbjct: 721 DISQRKTVERQLEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLELEIRSNR---- 776 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P + + +S ++ +++D++D +KIE+G++++H V + + +L Q Sbjct: 777 --PVEKDTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSIHPTAVDFHQEMERMFTLYQPI 834 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736 ANE+ + ++IP +L AD+ V+Q+ N+L NA+ FT G + T S+E+ Sbjct: 835 ANERGLRFSGWLDDHIPPLLMADMLRVRQVMGNLLGNALKFTEQGSVSVDITWEPSDEQH 894 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + + + DTG+G++ +PF Q + R G+GLGL + ++ GK + Sbjct: 895 GVMNIDITDTGIGISPAAQATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGKIAL 954 Query: 795 FSTPAKGTLIEIIFPL 810 S KGT + I PL Sbjct: 955 ESQLGKGTSLLITLPL 970 >gi|323494087|ref|ZP_08099203.1| signal transduction histidine kinase [Vibrio brasiliensis LMG 20546] gi|323311714|gb|EGA64862.1| signal transduction histidine kinase [Vibrio brasiliensis LMG 20546] Length = 716 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 84/259 (32%), Positives = 139/259 (53%), Gaps = 19/259 (7%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + K+ +K+ AKK+AE+ ++ K+ FLA +SHE+RTPL A+IG S ++ + + + Sbjct: 218 DLKERTDKMEEAKKLAEQSATAKARFLANMSHEMRTPLNAVIGLS----HKEYYQGADDQ 273 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ-LYANE 681 + I+ SG +L ++N +LD+SKIE GKM L + SE I L + ++ + Sbjct: 274 TRSFIAMINNSGKHLLKLINSVLDLSKIEQGKMKLEHDCF----YCSELIELSKTIFVDT 329 Query: 682 KRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNE 735 + + FA+ + +++AD + QI N+ NA+ FT SG Q+ I S E Sbjct: 330 SKPDVEILFASPVDHDYQLIADKTKLLQIINNLSYNALKFTDSGYVDIQLSIEVGEESTE 389 Query: 736 E----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + L V DTG+GM+ +L K + F Q +S R GTGLGL + +++V+ G Sbjct: 390 QSPSYLTLVVTDTGIGMSEEQLSKVFEEFVQADDSITRRYGGTGLGLSICQSLVNMMGGT 449 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + S KGT + P+ Sbjct: 450 MEVDSEQDKGTEFRVSIPV 468 >gi|319956174|ref|YP_004167437.1| integral membrane sensor hybrid histidine kinase [Nitratifractor salsuginis DSM 16511] gi|319418578|gb|ADV45688.1| integral membrane sensor hybrid histidine kinase [Nitratifractor salsuginis DSM 16511] Length = 800 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 85/242 (35%), Positives = 134/242 (55%), Gaps = 10/242 (4%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 ++ A++E+ KS FLA +SHEIRTP+ IIGF+E++K+ PL N E+AN I++S Sbjct: 132 RRTAQEENQAKSLFLANMSHEIRTPMNGIIGFTELLKST---PL-NDEQQEFANIIEKSS 187 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 + +L+I+N++LD+SKIES K+ + + I + A E I + +I Sbjct: 188 HNLLNIINNILDLSKIESNKVEVEHITFETHHELDNTIDNFGVVAAENDIELYYFIDPSI 247 Query: 695 P-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS-----TTHTSNEEVILRVRDTGVGM 748 R+ D +K+I N+L+NA+ FT +GG+I + T + RV DTG+GM Sbjct: 248 SSRLKGDPTKIKEILTNLLNNAVKFTEAGGEISVEIEKLEATQGDRSLIEFRVIDTGIGM 307 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + +++K +PF Q +S + GTGLGL + K V+ GK + S KG+ Sbjct: 308 SQEQIKKIFEPFTQADSSITRKYGGTGLGLTITKEYVELMGGKLLVESEEGKGSTFSFTL 367 Query: 809 PL 810 PL Sbjct: 368 PL 369 >gi|227328226|ref|ZP_03832250.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 935 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/260 (33%), Positives = 130/260 (50%), Gaps = 7/260 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 425 VLLDVSARVKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSL- 483 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P R + N S +L+L I++D+LD SKIES ++ + + E +S S Sbjct: 484 PQDANRLVAAMN---NSSSLLLKIISDILDFSKIESEQLKIEACEFAPHEVISHITSNYL 540 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +KR+ + N+P + D ++Q+ N+LSNAI FT +G II + Sbjct: 541 PLVVKKRLTLYCFIDPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDTG--CIIFEVGCRDG 598 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + VRDTGVG+ E K PF Q + Q +GTGLGL + + +V+ G I Sbjct: 599 YLEFVVRDTGVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITIE 658 Query: 796 STPAKGTLIEIIFPLYDTSH 815 S P G+L + PLY + Sbjct: 659 SEPGLGSLFGVRIPLYKARY 678 >gi|257060052|ref|YP_003137940.1| histidine kinase [Cyanothece sp. PCC 8802] gi|256590218|gb|ACV01105.1| histidine kinase [Cyanothece sp. PCC 8802] Length = 845 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 132/229 (57%), Gaps = 8/229 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHEIRTPL AIIGFS++++ + + + Y I SG+ +L ++ND+ Sbjct: 363 KSEFLANMSHEIRTPLNAIIGFSDLLQTL----VRDYKSRSYLRSIVSSGHTLLALINDI 418 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRS 703 LD+SKIE+ K+ L EPV+L V E + + A++K I + T +++IP ++ D Sbjct: 419 LDLSKIEANKLELREEPVNLKGLVQEIKQIFSMQASQKNIELITDVSSDIPLLIEFDEIR 478 Query: 704 VKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPF 760 ++QI N++ NA+ FT G +I ++ + ++ +R V+DTG+G+ + + ++ + F Sbjct: 479 LRQILFNLVGNALKFTQKGYIKITVNCDYLDLNKITIRIYVQDTGIGIPSDQHDRMFEAF 538 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q GTGLGL + K + + G + S KG+ +IFP Sbjct: 539 TQKEGQITRTYGGTGLGLAITKRLTEMLGGTISLHSESEKGSTFLMIFP 587 >gi|170751881|ref|YP_001758141.1| integral membrane sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170658403|gb|ACB27458.1| integral membrane sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 1124 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 140/251 (55%), Gaps = 10/251 (3%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 +L +I+ K KL AK+ AE + KS ++ +SHE+RTPL+ ++G+++++++ Sbjct: 642 ALYQAEIAAHKVTDAKLQEAKERAEAANQAKSRYVVGISHELRTPLSTVLGYAQLLESD- 700 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P + I RS + +++ LLDIS++E+G++ +H + V L + + + + + Sbjct: 701 --PAIPAHRVNGLRVIRRSAQHLSGLIDGLLDISRMEAGRLQIHRDEVRLTDFLDQLVDM 758 Query: 675 VQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 V+L A E + R S +P ++A D + ++Q+ LN+LSNAI FT + G + + ++ S Sbjct: 759 VRLQAREAGLEFRFSRPEILPAVVATDEKRLRQVLLNLLSNAIKFTEA-GTVSLDLSYRS 817 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPF--GQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + +RDTG G+ +L + +PF G P ++ GTGLGL +A + G+ Sbjct: 818 -QIAVFTIRDTGPGIPEADLARIFEPFERGSTPAARST--PGTGLGLTIANLLAQLLGGE 874 Query: 792 FYIFSTPAKGT 802 + + P GT Sbjct: 875 ITVTAAPGGGT 885 >gi|23011796|ref|ZP_00052052.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 770 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/250 (29%), Positives = 141/250 (56%), Gaps = 10/250 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I+ K KL AK+ AE + KS ++ +SHE+RTPL A++G++++++ P Sbjct: 276 EIAAHKVTDAKLQQAKETAEAANLAKSRYVVGISHELRTPLNAVLGYAQLLEGDPSIP-- 333 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 PR I RS + +++ LLDIS++E+G++ + + L + +++ + +V+L A Sbjct: 334 EPRR-NGIRVIRRSAQHLSGLIDGLLDISRMEAGRLQTYRNEIRLADFLAQIVDMVRLQA 392 Query: 680 NEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + R + + +P ++A D + ++QI LN+LSNAI FT + G++ + ++ S + + Sbjct: 393 EAAGLSFRFTRPDTLPAVVATDEKRLRQILLNLLSNAIKFT-AEGEVALEMSYRS-QVAV 450 Query: 739 LRVRDTGVGMTNYELEKAMKPF--GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +RDTG+G+ +L + +PF G +P ++ GTGLGL +A + G+ + S Sbjct: 451 FSIRDTGLGIPEADLARIFEPFERGSMPAARA--APGTGLGLTIAHLLAQVMGGEITVES 508 Query: 797 TPAKGTLIEI 806 +GT + Sbjct: 509 RVGEGTCFRV 518 >gi|289675085|ref|ZP_06495975.1| PAS [Pseudomonas syringae pv. syringae FF5] Length = 239 Score = 119 bits (299), Expect = 2e-24, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 129/228 (56%), Gaps = 10/228 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS FLA +SHEIRTP+ A+IG E+ +K G L + IE A S N +LD++ D Sbjct: 3 KSTFLATMSHEIRTPMNAVIGMLELALKRADHGEL-DRSAIEVAY---SSANDLLDLIGD 58 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702 +LDI++IESG+++L+ E +L V + + A +K + + + I +L D Sbjct: 59 ILDIARIESGRLSLNPERANLRRLVESVLRVFDGLARQKDLELVLELDSRISADVLIDPL 118 Query: 703 SVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI---LRVRDTGVGMTNYELEKAMK 758 KQI N++SNAI FTP G ++++ + N +++ + V+D+G+G++ + ++ + Sbjct: 119 RFKQILSNLVSNAIKFTPMGRIKVVLQAAESPNPQLLHLHITVQDSGIGISVEDQQRLFE 178 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 PF Q N+ Q+ G GLGL + + + G ++STP GT I + Sbjct: 179 PFAQADNTGQMARTGAGLGLVICRNLCMMMGGNLSLYSTPGHGTRISM 226 >gi|332712494|ref|ZP_08432420.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332348789|gb|EGJ28403.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 1356 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 133/252 (52%), Gaps = 16/252 (6%) Query: 579 EKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQ---RFGPL--GNPRYI-------- 624 EKE K+DF++ VSHE+RTPLT+++GF+++I+ + PL N I Sbjct: 881 EKEVDRMKTDFISTVSHELRTPLTSVMGFAKLIQKKLEKTLFPLIPTNDHKIQRTLKQVS 940 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E N I G + ++ND+LD++K+E+G++ +P+S+ + + AI + + Sbjct: 941 ENVNIIISEGERLKALINDVLDLAKLEAGRVEWKMQPLSVVDVLERAIIATTALFEQNDV 1000 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + S +P+I+ D + Q+ +N++SNA FT G + + E+ + + D+ Sbjct: 1001 ELIKSIDEGLPQIIGDRDRLIQVVINLISNAAKFTDKG--FVYCKVRRTGSEITVSIIDS 1058 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ E + F Q N+ + +GTGLGLP+ K +V+ + G+ ++ S KG+ Sbjct: 1059 GIGISEAEQTLIFEKFKQAGNTLTEKPQGTGLGLPICKEIVEHHQGQIWVESELGKGSNF 1118 Query: 805 EIIFPLYDTSHP 816 P+ S P Sbjct: 1119 SFSLPISVESEP 1130 >gi|315125214|ref|YP_004067217.1| sensor protein [Pseudoalteromonas sp. SM9913] gi|315013727|gb|ADT67065.1| sensor protein [Pseudoalteromonas sp. SM9913] Length = 896 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 134/250 (53%), Gaps = 14/250 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +QEK K A++ S+ KS FLA +SHEIRTP+ I G + Q+ YI Sbjct: 514 RQEKQK-------ADEASAIKSQFLANMSHEIRTPINGIKGMHYLALQQQDWQQAKG-YI 565 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E A D + +++L ++ND+LD SK+E+GK+ L EPV+L + + + L+Q K + Sbjct: 566 EQA---DGALSVLLRVLNDVLDFSKMEAGKLELMQEPVNLKQLAEDIVGLMQFEVESKSL 622 Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 ++ + ++ IL D +KQI LN+L+NA+ FT G I S++ V D Sbjct: 623 SLKLEYDSDAHLILNTDPIRLKQILLNLLNNAVKFTAKG--CITLKIWQSSKMTYFSVND 680 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+++ ++ KPF Q +S + GTGLGL + K +V+ G + S+ G+ Sbjct: 681 TGIGISSAAQKQLFKPFSQADSSTSRQYGGTGLGLSICKKLVELMGGAIDLKSSEGHGST 740 Query: 804 IEIIFPLYDT 813 P++ + Sbjct: 741 FTFSLPVHSS 750 >gi|300769971|ref|ZP_07079850.1| sensor histidine kinase/respose regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300762447|gb|EFK59264.1| sensor histidine kinase/respose regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 1138 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 130/233 (55%), Gaps = 3/233 (1%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 E+ S +KS+F+A +SHE+RTPL +I+ ++++K+ + L N I+YA I +G+ + Sbjct: 477 VEQASKYKSEFMANMSHELRTPLNSILILAKLLKDNKHHNL-NTDQIKYATVIHSAGSDL 535 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696 L ++N+LLD++KIESG+++L + + + L ++ A EK I +T+ P Sbjct: 536 LHLINELLDLAKIESGQIDLVEDQIDIHSLTRNIEGLFRISAEEKSINFKTTIDPEAPST 595 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 L D ++Q+ N+LSNA FT +GG+I ++ H N + V+D G+G+ + + Sbjct: 596 FLCDEYRLEQVLKNLLSNAFKFTLNGGKIELTYKHV-NGNIHFIVQDDGIGIAPEKQKLI 654 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q S + GTGLGL + + + G+ + S P KG+ I P Sbjct: 655 FEAFKQEDGSTSRKYGGTGLGLSICRELATLLGGRISLESEPDKGSTFTFILP 707 >gi|218246976|ref|YP_002372347.1| histidine kinase [Cyanothece sp. PCC 8801] gi|218167454|gb|ACK66191.1| histidine kinase [Cyanothece sp. PCC 8801] Length = 845 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 132/229 (57%), Gaps = 8/229 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHEIRTPL AIIGFS++++ + + + Y I SG+ +L ++ND+ Sbjct: 363 KSEFLANMSHEIRTPLNAIIGFSDLLQTL----VRDYKSRSYLRSIVSSGHTLLALINDI 418 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRS 703 LD+SKIE+ K+ L EPV+L V E + + A++K I + T +++IP ++ D Sbjct: 419 LDLSKIEANKLELREEPVNLKGLVQEIKQIFSMQASQKNIELITDVSSDIPLLIEFDEIR 478 Query: 704 VKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPF 760 ++QI N++ NA+ FT G +I ++ + ++ +R V+DTG+G+ + + ++ + F Sbjct: 479 LRQILFNLVGNALKFTQKGYIKITVNCDYLDLNKITIRIYVQDTGIGIPSDQHDRMFEAF 538 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q GTGLGL + K + + G + S KG+ +IFP Sbjct: 539 TQKEGQITRTYGGTGLGLAITKRLTEMLGGTISLHSESEKGSTFLMIFP 587 >gi|171060040|ref|YP_001792389.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170777485|gb|ACB35624.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 762 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 123/241 (51%), Gaps = 7/241 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ LS AK AE + K FLA +SHEIRTP+ AIIG S ++ + P Sbjct: 367 EERTAALSDAKLAAEAANLAKGSFLANMSHEIRTPMNAIIGLSALLLRKP----QEPDTA 422 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I+ SG +L I+ND+LD+SKIE+GK +L E + + S+V A+ K I Sbjct: 423 DKLGLIEASGKHLLGIINDILDLSKIEAGKFHLSQERLDVRVLPVNVCSMVAEAAHAKGI 482 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---RV 741 ++T PR+L DL + Q LN++SNAI FT +G + + +++ IL V Sbjct: 483 KLKTELDFLPPRLLGDLTRITQALLNLVSNAIKFTRTGSVTVRAVREEEDQDSILLRFEV 542 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G++ + + PF Q S GTGLGL + + + G S +G Sbjct: 543 IDTGIGISAQAMSRLFSPFEQADASTVRNFGGTGLGLVITRRLAQLMGGDAGAASVLGEG 602 Query: 802 T 802 + Sbjct: 603 S 603 >gi|160939015|ref|ZP_02086366.1| hypothetical protein CLOBOL_03909 [Clostridium bolteae ATCC BAA-613] gi|158437978|gb|EDP15738.1| hypothetical protein CLOBOL_03909 [Clostridium bolteae ATCC BAA-613] Length = 618 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 101/323 (31%), Positives = 160/323 (49%), Gaps = 39/323 (12%) Query: 514 TEILSLD-----LRQTLEKITLGSTKEEKLLSLRIIIKKLPFS------SCYSLTMHDIS 562 T ++SLD L Q E I T + +L KKL +S LT DI+ Sbjct: 26 TRLMSLDNVIKELEQNKEYILYSRTIQNGILR----DKKLRYSYYNRQRKIILLTRSDIT 81 Query: 563 EWKQEKNK---LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 E ++EK + L A A+ + KS FL+R+SH+IRTP+ AIIG + + + P Sbjct: 82 EIREEKRQKELLQDALNAAQVANQAKSTFLSRMSHDIRTPMNAIIGLTAIAASCADDP-- 139 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R I+ I S L+L ++N++LD+SKIESG++ L E LD + IS++Q Sbjct: 140 -DRVIDCLGKITSSSKLLLSLINEVLDMSKIESGRIVLSEEDFLLDSLFKDVISMIQPD- 197 Query: 680 NEKRILIRTSFANNI-------PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 L R NI + D++ ++QI N+LSNAI +TP GG I + + T Sbjct: 198 -----LKRRGHTLNIHIETLEHEAVCGDMQRLQQIINNLLSNAIKYTPHGGTITLELSET 252 Query: 733 SNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + + L D GVG++ +E+ +PF + + + +GTGLG+ + + + Sbjct: 253 RSPQQGYSTYRLVCEDNGVGISPEFIERVFEPFERAEDERIRSVQGTGLGMAITRNIARM 312 Query: 788 NMGKFYIFSTPAKGTLIEIIFPL 810 G ++ STP +G+ + F L Sbjct: 313 MDGDIWVESTPGRGSRFTVTFNL 335 >gi|111225794|ref|YP_716588.1| putative two-component system sensory histidine kinase [Frankia alni ACN14a] gi|111153326|emb|CAJ65078.1| putative two-component system sensory histidine kinase [Frankia alni ACN14a] Length = 1340 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/264 (29%), Positives = 135/264 (51%), Gaps = 13/264 (4%) Query: 559 HDIS----EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 HDI E +Q + +L + S +KS+FLA +SHE+RTPL +++ + ++ Sbjct: 875 HDIEVKNFEIEQARQELEERARQLALASKYKSEFLANMSHELRTPLNSLLILARLLAQNP 934 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 L +P+ +EYA+ I +G+ +L ++ND+LD+SK+E+GKM++H E V+L + V + + Sbjct: 935 TRNL-SPKQVEYAHVIHSAGSDLLQLINDILDLSKVEAGKMDVHVEEVALVDIVDDVQAT 993 Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-------QII 726 EK + + A ++P R+ D V Q+ N+LSNA+ FT G Sbjct: 994 FSPITAEKGLRFTVAMAPDLPARLRTDRHLVAQVLRNLLSNAVKFTEQGSVDLAIAVSGA 1053 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + + V+ V DTG+G+ LE+ F Q + R GTGLGL + + + Sbjct: 1054 GAGGRAPGQAVLFSVSDTGIGIAAENLERIFGAFQQGDGTTSRRYGGTGLGLSICREVAT 1113 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPL 810 G+ S +G+ + P+ Sbjct: 1114 LLGGEIQARSEFGRGSTFTLQLPM 1137 >gi|91778793|ref|YP_554001.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans LB400] gi|91691453|gb|ABE34651.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans LB400] Length = 776 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 96/383 (25%), Positives = 177/383 (46%), Gaps = 16/383 (4%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE- 502 +++ + +++ +I E SD I I + G I N ++ GY + +IL KP +FL Sbjct: 272 RKEAQTVLLRQAAIFEHLSDAIVITDLRGNITDFNVGGERMLGYRMREILGKPVAMFLPP 331 Query: 503 QNTPSVMNHYLTEILSLD-LRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTM- 558 + P + L + + R L + ++ ++K L + Y Sbjct: 332 EQAPGIRREALAALAAEGTWRGELPFVRHDGSRG----VCETVVKPLANARGDIYGAVSI 387 Query: 559 -HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 DI+E ++ + +L+ K K +FLA ++HE+R PL + E+++ + F Sbjct: 388 NRDITERRRAEQQLTRLNLELSKADRRKDEFLATLAHELRNPLAPMRNVLEILRLKEFA- 446 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 +P+ + DR + +V+DLL++S+I GK+ L + + L A+ A+ + Sbjct: 447 --DPQLSWSRDVFDRQLQHMTHLVDDLLEVSRITQGKLELRKQRLELARAMQSAMEAARP 504 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 + + ++AD + Q+ LN+L+NA +TP GG I ++ +E V Sbjct: 505 TVQASSHHLSVTLPREPLYLIADPTRLSQMILNLLNNAAKYTPPGGSISLAAEREGDEAV 564 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS- 796 I+ VRD+G+G+ L+ + F Q+ + G G+GL L + + + + G FS Sbjct: 565 IV-VRDSGIGIPGEHLDSVFEMFSQLAPALDRSQGGLGIGLALVRGLAELHGGTVAAFSE 623 Query: 797 TPAKGTLIEIIFPLYDTS-HPHD 818 P KG+ I PL T+ P D Sbjct: 624 GPGKGSEFMIRLPLTATALQPSD 646 >gi|331008579|gb|EGH88635.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 1170 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 127/232 (54%), Gaps = 3/232 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ S +KS+FLA +SHE+RTPL + + ++++ + G +++A I +GN +L Sbjct: 488 QRASKYKSEFLANMSHELRTPLNSSLILAKLLA-ENPGENLTAEQVKFAESIYSAGNDLL 546 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++ND+LDISK+E+GK+ + E S+ V S+ Q A EK++ P +L Sbjct: 547 NLINDILDISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTML 606 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + ++QI N+LSNAI FT +G + + + ++ VRD+G+G+ + Sbjct: 607 FTDRQRLEQILKNLLSNAIKFTEAGA-VSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIF 665 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q + R GTGLGL +++ + G + S P +G++ ++ P Sbjct: 666 EAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLP 717 >gi|330446946|ref|ZP_08310597.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491137|dbj|GAA05094.1| hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 931 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/251 (31%), Positives = 132/251 (52%), Gaps = 8/251 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + + N +Y Sbjct: 275 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTKL----NTSQKDYLLT 330 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+ S N +L I+ND+LD SK+E+GK+ L P +++ E + L+ A+EK + + Sbjct: 331 IENSANNLLTIINDILDFSKLEAGKLLLENIPFDFTDSLDEVMRLLAPSAHEKGLELTLK 390 Query: 690 FANNI-PRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTG 745 N I P ++ D ++Q+ N++ NA+ FT G + + + +N E+ VRDTG Sbjct: 391 IDNRIPPGLIGDPLRIQQVVTNLIGNAVKFTEHGNIDVSVELKSDIDNNIELQFMVRDTG 450 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEVSLTSRLHQGSTFW 510 Query: 806 IIFPLYDTSHP 816 + T P Sbjct: 511 FTIKMNKTDLP 521 >gi|330796122|ref|XP_003286118.1| hypothetical protein DICPUDRAFT_150045 [Dictyostelium purpureum] gi|325083937|gb|EGC37377.1| hypothetical protein DICPUDRAFT_150045 [Dictyostelium purpureum] Length = 1758 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 100/386 (25%), Positives = 188/386 (48%), Gaps = 17/386 (4%) Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + ++ +++E + +++ S+ +++ + +++++G+I N A +F ++D+L P Sbjct: 693 SSVDLKEIERKELRIQSLFRISNEAL-VVHKDGLITDANPAFESMFQIKLQDLLY-PIQS 750 Query: 500 FLEQNTPSVMNHY---LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 + + P++ + ++ +E + S+ + +R + Sbjct: 751 GIWEFLPALEGMFEPGASKTFDNSDIGVIETTGIDSSGRTFQVEVRTNKATYGGEPVDVI 810 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 ++ DI+ KQ + +A + AE + K FL VSHE+RTP+ ++ +++++ Sbjct: 811 SIIDITGRKQLM-EADYALRKAEAANEAKVIFLTTVSHELRTPINGVLASADILERTTLD 869 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 E+ N I SGN +LD++ND+LD SKIE+GKM + S+ + + I +V Sbjct: 870 STQK----EFLNCIKLSGNYLLDLINDILDYSKIEAGKMEIIKYDFSILKMLDNGIRIVS 925 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 EK + + N+P I+ D R +KQI LN LSN+I FT + GQIII S Sbjct: 926 KNIYEKGLELCVFVDPNVPVIINGDGRRIKQILLNFLSNSIKFT-NEGQIIIRVKLESEN 984 Query: 736 E----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 E + + V D+G+G+ L + F QI + + +GTGLGL ++K + G Sbjct: 985 EKESLIKIDVEDSGIGIKPEHLGQLFASFSQIDSGNSRKYQGTGLGLSISKRLCKMMGGD 1044 Query: 792 FYIFSTPAKGTLIEIIFPL-YDTSHP 816 ++ S G+ P Y T+ P Sbjct: 1045 VHVKSEFGIGSTFSFTIPCGYSTNIP 1070 >gi|300868651|ref|ZP_07113263.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300333345|emb|CBN58455.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 663 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 81/250 (32%), Positives = 139/250 (55%), Gaps = 21/250 (8%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L+ AK+ AE + KS FLA +SHE+R+PL AI+GFS+++ + P +IE Sbjct: 174 ELAEAKEKAEVANEAKSIFLANMSHELRSPLNAILGFSQIMTRSKTLP---SEHIENVGI 230 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RSG +L ++N++LD+SKIE+G L+ + L + + + L A+++R+ + Sbjct: 231 ISRSGEHLLSLINNVLDLSKIEAGHTTLNEKNFDLYRLLDDLEDMFHLKADDRRLQLIFE 290 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII---------ISTTHT-----SN 734 + ++PR + D ++QI +N+L+NA+ FT GG + ++ T T + Sbjct: 291 RSPDVPRYVRTDEVKLRQILINLLNNALKFTQVGGVSVRVVTDGGSLVTGTATKQITDES 350 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 E+ +LR V D+G G+ EL+ + F Q ++ + EGTGLGLP+++ V G+ Sbjct: 351 EKTMLRFEVEDSGPGIAPEELDSLFEVFVQTQTGKEAQ-EGTGLGLPISRKFVQLMGGEI 409 Query: 793 YIFSTPAKGT 802 + S GT Sbjct: 410 AVSSEVGSGT 419 >gi|187922640|ref|YP_001894282.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] gi|187713834|gb|ACD15058.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] Length = 1480 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 87/260 (33%), Positives = 134/260 (51%), Gaps = 8/260 (3%) Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 S +S D S ++L+ A+ +AE S K DF A +SHEIRTP+ ++G EV+ Sbjct: 800 SVVWSGYWVDASLEHARSDELARARDLAEAASRAKDDFFAMMSHEIRTPMNGVLGLVEVL 859 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + PL N E I S +L I++DLLD SKIE+G++ + E + L E V Sbjct: 860 ERT---PL-NADQGEMLGMIHESAGALLQILDDLLDYSKIEAGRLTIEAESIDLRELVDN 915 Query: 671 AISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIIS 728 A+ L+ A+EK + +R ++ L D ++QI N+L NAI FTP G + +S Sbjct: 916 AVGLLAGRAHEKGLKVRVDIGPDVAATLRGDSVRLRQILFNLLGNAIKFTPQGEVDVCVS 975 Query: 729 TTHTSN--EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + + + + V DTG+G+ K +PF Q +S R GTGLGL + + ++D Sbjct: 976 VVAEGDGIQTLEMVVEDTGIGIAPEVQAKLFEPFVQAESSTTRRFGGTGLGLTICRKLID 1035 Query: 787 ANMGKFYIFSTPAKGTLIEI 806 G + S P GT + + Sbjct: 1036 LMNGSLTLRSEPGSGTCMTV 1055 >gi|114848882|gb|ABI83649.1| chromatic acclimation sensor [Synechocystis sp. PCC 6803] Length = 753 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 116/391 (29%), Positives = 193/391 (49%), Gaps = 40/391 (10%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGI------ILSTNRAVSKLFGYPVEDILRKP 496 KR+ E ++ L S++ T+D + I E I IL N A +K+ GY E++L K Sbjct: 377 QKRQAE-QIRLLQSVVVNTNDAVVITEAEPIDDPGPRILYVNEAFTKITGYTAEEMLGK- 434 Query: 497 FTVFLEQNTPSVMNHYLTEILSLD-LRQ--------TLEKITLGSTKEEKLL--SLRIII 545 TP V+ T LD +RQ T+E I E + SL + Sbjct: 435 --------TPRVLQGPKTSRTELDRVRQAISQWQSVTVEVINYRKDGSEFWVEFSLVPVA 486 Query: 546 KKLPFSSCYSLTMHDISEWKQ-EKNKLSHAKKIAEKESSH-KSDFLARVSHEIRTPLTAI 603 K F + + D++E ++ E+ +L+ + EKE S K+ F + SHE RTPL+ Sbjct: 487 NKTGFYTHWIAVQRDVTERRRTEEVRLALER---EKELSRLKTRFFSMASHEFRTPLSTA 543 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 + +++++N L + + I S ++ +++D+L I++ E+GK L F P Sbjct: 544 LAAAQLLENSEVAWLDPDKRSRNLHRIQNSVKNMVQLLDDILIINRAEAGK--LEFNPNW 601 Query: 664 LDEAV--SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 LD + + I +QL +++ A + + L D R V+ I N+LSNAI ++P Sbjct: 602 LDLKLLFQQFIEEIQLSVSDQYYFDFICSAQD-TKALVDERLVRSILSNLLSNAIKYSPG 660 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GGQI I+ + S E++I V D G+G++ + ++ +PF + N + I GTGLGL +A Sbjct: 661 GGQIKIALSLDS-EQIIFEVTDQGIGISPEDQKQIFEPFHRGKNVRNI--TGTGLGLMVA 717 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 K VD + G + S +GT + I Y+ Sbjct: 718 KKCVDLHSGSILLKSAVDQGTTVTICLKRYN 748 >gi|51596248|ref|YP_070439.1| two-component sensor [Yersinia pseudotuberculosis IP 32953] gi|51589530|emb|CAH21160.1| possible two-component sensor [Yersinia pseudotuberculosis IP 32953] Length = 1342 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 137/256 (53%), Gaps = 11/256 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DIS+ K + +L A+ AE + KS FLA +SHE+RTP+ AI+G E+ I++ R Sbjct: 721 DISQRKTVERQLEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLELEIRSNR---- 776 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P + + +S ++ +++D++D +KIE+G++++H V + + +L Q Sbjct: 777 --PVEKDTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSIHPTAVDFHQEMERMFTLYQPI 834 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736 ANE+ + ++IP +L AD+ V+Q+ N+L NA+ FT G + T S+E+ Sbjct: 835 ANERGLRFSGWLDDHIPPLLMADMLRVRQVMGNLLGNALKFTEQGSVSVDITWEPSDEQH 894 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + + + DTG+G++ +PF Q + R G+GLGL + ++ GK + Sbjct: 895 GVMNIDITDTGIGISPAAQATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGKIAL 954 Query: 795 FSTPAKGTLIEIIFPL 810 S KGT + I PL Sbjct: 955 ESQLGKGTSLLITLPL 970 >gi|303326366|ref|ZP_07356809.1| sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] gi|302864282|gb|EFL87213.1| sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] Length = 885 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 84/260 (32%), Positives = 135/260 (51%), Gaps = 8/260 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + D ++ + LS A + A ++ KS+FL+ +SHEIRTP+ AIIG + I R Sbjct: 345 MVLTDQTDTLMYQQTLSDALEAARGANAAKSNFLSHMSHEIRTPMNAIIGMT-TIALSRL 403 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G R + I +S +L ++ND+LD+SKIE G++++ EP +L ++ ++L+ Sbjct: 404 DDRG--RLEDCLGKIAQSSRHLLGLINDVLDMSKIERGRLSIAHEPFNLRLSLQGIVNLI 461 Query: 676 QLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQII--ISTTHT 732 Q E+ S + + + D + QI +NILSNA+ FTP GG I I H Sbjct: 462 QPQIQEQGQNFEVSLSEVDEEELNGDGMRLNQILINILSNAVKFTPKGGSIRLDIRQLHK 521 Query: 733 SNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 ++ V R +RDTG+GM+ + + PF Q + + GTGLG+ + K +V G Sbjct: 522 NHNNVRFRFIIRDTGIGMSEEFISRLYMPFEQATAATASQFGGTGLGMAITKNLVSLLGG 581 Query: 791 KFYIFSTPAKGTLIEIIFPL 810 + S KGT + P Sbjct: 582 MISVKSKEGKGTEFTVELPF 601 >gi|290476633|ref|YP_003469538.1| Sensor protein BarA [Xenorhabdus bovienii SS-2004] gi|289175971|emb|CBJ82774.1| Sensor protein BarA [Xenorhabdus bovienii SS-2004] Length = 791 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/238 (33%), Positives = 125/238 (52%), Gaps = 8/238 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L+ AKK A++ K++FLA +SHE+RTPL +IGF+ Q + EY Sbjct: 285 ELTLAKKRAQEAVKIKTEFLANMSHELRTPLNGVIGFTR----QMLKTPITSQQAEYLYV 340 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD S++ES K+ L P L + V+E I L+ A+EK + ++ Sbjct: 341 IERSANNLLKIINDILDFSRLESNKLVLDQVPFLLRDTVNEVIELLTPVASEKNLPLQHR 400 Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTG 745 + +P ++ D ++QI N++ NAI FT G I+ ++ + DTG Sbjct: 401 IDDKLPNLMIGDPIRLQQILTNLIGNAIKFTDKGSVILEVRLRQQQHHLVQIDFTITDTG 460 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G+ + F Q S GTGLGL + K +V+ G+ S PAKGT+ Sbjct: 461 IGIKPEYRPILFQAFNQADASITRHYGGTGLGLSITKRLVNEMKGEIDFISEPAKGTV 518 >gi|123441725|ref|YP_001005709.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088686|emb|CAL11488.1| two component sensor kinase/response regulator protein RcsC [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 955 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 84/253 (33%), Positives = 131/253 (51%), Gaps = 7/253 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 447 DVSSRVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PQG 505 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 506 VERLVTAMN---NSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLV 562 Query: 680 NEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +KR+ + ++PR+ L D ++Q+ N+L+NAI FT +G II + Sbjct: 563 VKKRLGLYCFIEADVPRLMLGDAVRLQQVISNLLNNAIKFTDTG--CIILQVRVRGYYLE 620 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 RVRDTGVG+ + E+ + PF Q+ Q +GTGLGL + + +V+ G + S Sbjct: 621 FRVRDTGVGINSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISEL 680 Query: 799 AKGTLIEIIFPLY 811 G++ I PLY Sbjct: 681 GMGSIFAIRIPLY 693 >gi|28899864|ref|NP_799519.1| putative two-component sensor [Vibrio parahaemolyticus RIMD 2210633] gi|260880452|ref|ZP_05892807.1| histidine kinase [Vibrio parahaemolyticus AN-5034] gi|28808147|dbj|BAC61352.1| putative two-component sensor [Vibrio parahaemolyticus RIMD 2210633] gi|308092209|gb|EFO41904.1| histidine kinase [Vibrio parahaemolyticus AN-5034] Length = 632 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 130/254 (51%), Gaps = 8/254 (3%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + + ++ + +L + AE + KS+FLA +SHEIRTP+ IIG + ++ + + + Sbjct: 220 VQKVREHQAELEAERDKAEVANRKKSEFLATMSHEIRTPMNGIIGVASLLSDTKL----D 275 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P+ E+ ID S ++ I++D+LD SK+E+GK+ L E + + + ISL + A Sbjct: 276 PQQKEFVEIIDNSSQSLMTIIDDILDFSKVEAGKVELASETYHFRQLLDDVISLHTVKAQ 335 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EE 736 +K + + + +P + D +KQ+ N+LSNA+ FT G ++ + H N + Sbjct: 336 QKNLQLLSDIDPKLPAEVQGDEGRLKQVLNNLLSNAVKFTERGHVKLLVSLHEQNNDIAQ 395 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V RV D+G+G+ + + F Q S + GTGLGL + +V G + S Sbjct: 396 VRFRVVDSGIGIAKEHQQAVFERFQQADGSTTRKYGGTGLGLAICAQLVHIMGGDIKLTS 455 Query: 797 TPAKGTLIEIIFPL 810 G+ + PL Sbjct: 456 ELGLGSCFDFTIPL 469 >gi|84390109|ref|ZP_00991371.1| sensor histidine kinase/response regulator [Vibrio splendidus 12B01] gi|84376763|gb|EAP93638.1| sensor histidine kinase/response regulator [Vibrio splendidus 12B01] Length = 937 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 129/251 (51%), Gaps = 8/251 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ Q + +Y Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFT----RQMLKTHLSTSQTDYLQT 331 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L I+ND+LD SK+E+GK+ L P ++ E ++L A+EK + + Sbjct: 332 IERSANNLLSIINDILDFSKLEAGKLALENIPFEFQASLEEVVNLQATNAHEKGLELTLK 391 Query: 690 FANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTG 745 + P ++ D ++QI N++ N+I FT G I + +E+ I VRDTG Sbjct: 392 IDPKVPPGVVGDPLRIQQILTNLVGNSIKFTERGNIDISVELRSQSEDSIELQFMVRDTG 451 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 452 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFW 511 Query: 806 IIFPLYDTSHP 816 L T P Sbjct: 512 FTLRLSTTDMP 522 >gi|145512050|ref|XP_001441947.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124409208|emb|CAK74550.1| unnamed protein product [Paramecium tetraurelia] Length = 704 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 126/220 (57%), Gaps = 25/220 (11%) Query: 571 LSHAKKIA--EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY---IE 625 ++H +IA EK + +KS L +V+HE +TPL II Q G + NP + + Sbjct: 298 ITHVNQIAALEKTNFNKSQMLYKVAHEFKTPLNIII--------QSVGTVLNPNHNANDQ 349 Query: 626 YANYIDRS-------GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 +++S + +L +VNDLLD++++++GK NL F+ V + E ++E I ++++ Sbjct: 350 CVKQLEKSMQPIKSMASSLLSLVNDLLDVAQLKAGKFNLQFQQVKITELINEIIEIMKIQ 409 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 AN K + ++ ++P+ I D VKQI LN+LSNAI FT +GG I+ +E+ Sbjct: 410 ANSKGLYMKLEQQKHVPQWITTDPNRVKQIILNLLSNAIKFTETGG---ITIYLDLDEDC 466 Query: 738 I-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 + ++V+DTG+G+ E K FG++ NS I G G GL Sbjct: 467 VEIKVKDTGIGIPKNEQNKLFTAFGRLENSDNITGVGLGL 506 >gi|119511775|ref|ZP_01630877.1| GAF Sensor Signal Transduction Histidine Kinase [Nodularia spumigena CCY9414] gi|119463548|gb|EAW44483.1| GAF Sensor Signal Transduction Histidine Kinase [Nodularia spumigena CCY9414] Length = 587 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/257 (31%), Positives = 140/257 (54%), Gaps = 20/257 (7%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A++ AE+ S KS+FLA VSHEIRTPL +IGF ++I G +P E + Sbjct: 324 ELEAARQKAEEASRLKSEFLANVSHEIRTPLNGMIGFLKLILE---GMADDPE--EQHQF 378 Query: 630 IDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + +L +L+I+ND+LDI+KIE+GKM L PV L+E + + ++ A + + Sbjct: 379 TSEAHHLSIHLLNIINDILDIAKIEAGKMELVCSPVKLNELFEDVENFLRPQAESRNLSF 438 Query: 687 RTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHTSNEE--- 736 R I+ + + + Q+ LN+ +NAI FT GG +++ ++ Sbjct: 439 RMHMLPTSDEIIVQGNYQRLLQVMLNLANNAIKFTQEGGITVSADLVLKQVEFQKQQFPG 498 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V +RV DTG+G++ + +K + F Q+ S+ + GTGLGL +++ +++A G+ + + Sbjct: 499 MVRVRVADTGIGVSLDKQDKLFQLFSQVDGSRTRQYGGTGLGLAISQKLIEAMGGEVHFY 558 Query: 796 ST-PAKGTLIEIIFPLY 811 S G+ + PLY Sbjct: 559 SLGEGLGSTVTFTVPLY 575 >gi|329132026|gb|AEB77974.1| GacS [Pseudomonas sp. P97.1] gi|329132028|gb|AEB77975.1| GacS [Pseudomonas sp. P97.6] Length = 203 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 123/205 (60%), Gaps = 8/205 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y I++S + +L I+N++ Sbjct: 3 KSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQLDYLGTIEKSADSLLGIINEI 58 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRTSFANNIPRILADLRS 703 LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ + + ++ D Sbjct: 59 LDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLSLVGDPLR 118 Query: 704 VKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 +KQI N++SNAI FT G + ++ H + ++ + ++DTG+G++ ++ + F Sbjct: 119 LKQILTNLVSNAIKFTREGTIVARAMLEDEHEDSVQLRISIQDTGIGLSAQDVRALFQAF 178 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMV 785 Q NS + GTGLGL ++K +V Sbjct: 179 SQADNSLSRQPGGTGLGLVISKRLV 203 >gi|323485533|ref|ZP_08090879.1| hypothetical protein HMPREF9474_02630 [Clostridium symbiosum WAL-14163] gi|323401181|gb|EGA93533.1| hypothetical protein HMPREF9474_02630 [Clostridium symbiosum WAL-14163] Length = 1312 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 85/275 (30%), Positives = 141/275 (51%), Gaps = 17/275 (6%) Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 ++I+ + ++ Y + E +Q++N LS A + A+ + KSDFLA +SH+IRTP+ Sbjct: 901 KVILTRTDMTATY------LKEQEQQRN-LSEALEFAKAANKAKSDFLAAMSHDIRTPMN 953 Query: 602 AIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 AIIG +E+ L + I E I S ++ I+ND+LDIS+IESGK + E Sbjct: 954 AIIGMTELA----LSDLSDREQIHESFTTIKSSSAHLISIINDILDISRIESGKAEMLQE 1009 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 S E + + + A K ++ S + D+ + ++ N+LSNAI FTP Sbjct: 1010 QFSSREEHQKIVKRIAPLAEAKGLVFTHSLDIRHDCCIGDVARLNRVVDNLLSNAIKFTP 1069 Query: 721 SGGQIIISTTH---TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 GG++ S + ++ R V DTG+GM + +PF + +S EGTG Sbjct: 1070 EGGRVDYSFAELPCCRPDHILCRITVTDTGIGMDEHTRACLFEPFFRHLDSAAGNVEGTG 1129 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 LG+ + K+ V+ + G + S P +G+ + P+ Sbjct: 1130 LGMSIVKSTVELSGGSIEVESEPGRGSKFIVKIPI 1164 >gi|197104499|ref|YP_002129876.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] gi|196477919|gb|ACG77447.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] Length = 833 Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 117/220 (53%), Gaps = 9/220 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG-PLGNPRYIEYANYIDRSGNLVLDIVND 643 KSDFLA +SHEIRTPLT+I+GF+ + + P G YA + + +L IVND Sbjct: 457 KSDFLANMSHEIRTPLTSILGFASFLDELKLPEPAGG-----YAAKVTTASRTLLAIVND 511 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRTSFANNIPRILADLR 702 +LD SK+E+G++ + P E + + L A K + L+ A + I AD Sbjct: 512 VLDFSKLEAGRLEMKPRPTDPAECARDVLDLFGPQAQAKGLELVLEPAAPAVAMIDAD-- 569 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 ++Q+ +N++ NA+ FT SG + + + +V DTG G+ +EK + F Q Sbjct: 570 RLRQVLMNLVGNAVKFTQSGSVRLSCAYDPAERRLTCKVADTGPGIGAAAMEKLFQRFSQ 629 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + S GTGLGL ++K +V+A G+ + S P +G+ Sbjct: 630 VDGSTTRAHGGTGLGLAISKGLVEAMGGRIGVESAPGRGS 669 >gi|300866806|ref|ZP_07111485.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300335188|emb|CBN56645.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 740 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 103/385 (26%), Positives = 188/385 (48%), Gaps = 38/385 (9%) Query: 456 SILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYL 513 +++E SD I + + + IL N A L GY + DIL TV+ + + +N + Sbjct: 362 AVVEQASDSIFLFDAKTKRILEANTAFINLLGYTLNDILN--LTVYDITVHDKDTVNRNI 419 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKL 571 ++ R+ E I ++ L+ + + + + + DI++ K+ ++ Sbjct: 420 ELLIRRKQRRLGEVIY--CRRDGSLVDVEVNANLISYGGREIICTVVRDITDRKRVLEEM 477 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 AK+ AE + KS FLA +SHE+RTPL AIIG+SE+++ + LG ++ I Sbjct: 478 YKAKEAAEAANLAKSQFLANMSHELRTPLNAIIGYSEMLQ-EDAEDLGEEEFVCDVKNIY 536 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ--LYANEKRILIRTS 689 ++G +L +++++LD+SKIE+G+M + + + + ++ V+ L N R+ ++ Sbjct: 537 KAGKHLLGLIDEILDLSKIEAGRMEMELMTFDVRATIRDVVATVEPLLIKNANRLNVQ-- 594 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGG--------QIIISTTHTSNEE----- 736 + +I + +D V+QI N+LSNA FT G ++ I + + E Sbjct: 595 YGEDIGFMHSDQTKVRQILFNLLSNAAKFTHDGTISLTVSRERVAIESEKLKDRESDVEN 654 Query: 737 ------------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 +I DTG+GM++ +L++ +PF Q S + GTGLGL +AK Sbjct: 655 DLSKTLIADYDFLIFNCTDTGIGMSSEQLQRLFQPFMQADPSTTRKYGGTGLGLAIAKKF 714 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809 + G+ + S KG+ +I P Sbjct: 715 CEMMGGEITVKSELGKGSTFTVIIP 739 >gi|239905602|ref|YP_002952341.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239795466|dbj|BAH74455.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 585 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 84/282 (29%), Positives = 142/282 (50%), Gaps = 34/282 (12%) Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 Y + E +LS A ++ KS F+ VSHE+RTP+T+I+GF ++I Sbjct: 311 AYFVVRKKTFELSDAAKELSEANVRLQEVDKIKSVFIESVSHELRTPMTSIMGFIKLISK 370 Query: 613 ---QRFGPL---------GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 + F P R +E ++ G + ++ND+LD +KIESG+M + Sbjct: 371 DFWKNFKPFLDQNEKLKKKTERIMENLQIVEFEGERLTRLINDVLDSAKIESGRMKWDDQ 430 Query: 661 PVSLDEAVSEAISLVQ---------LYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +++ + A+S ++ LY+N+ N+ P + AD + Q+ +N+ Sbjct: 431 IFQINDVLWLAVSTIKGQLPIGVDVLYSND----------NSSPWVKADPDRLMQVMMNL 480 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP--NSQQI 769 LSNA+ FT S G + +S + + + + V+DTGVG+ + +LEK F Q+ N + Sbjct: 481 LSNAVKFT-SNGYVSVSYESSLSNILTVTVKDTGVGIPDGDLEKVFDRFHQVQQDNDNES 539 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + +GTGLGL + K +VD GK ++ S KG+ + FP Y Sbjct: 540 KPKGTGLGLSICKQVVDHYGGKIWVESELGKGSFFKFTFPQY 581 >gi|298530453|ref|ZP_07017855.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509827|gb|EFI33731.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1112 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/258 (29%), Positives = 136/258 (52%), Gaps = 8/258 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DI+E K + +L AK+ AEK S KS+FLA +SHEIRTP++ IIG +++ ++ Sbjct: 554 SAQDITERKNAEIELYQAKEQAEKASMAKSEFLANMSHEIRTPISGIIGALDMLASES-- 611 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + + S + I+ND+LD+SK+E+GK++L E SL V + L Sbjct: 612 --ADQSRKDLVDMTLESARSLEQIINDILDLSKVEAGKLDLVHEDFSLRSLVRRVLGLYS 669 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A + I ++ + +P + D ++Q+ N++SNA+ FT +G +I +E Sbjct: 670 IQARNQGIALKVDADSRLPEYVRGDAHRLEQVLRNLVSNAVKFTQAGHVLIRVKAMDIDE 729 Query: 736 E---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 V +V D+G G++ L F Q + + +G+GLGL +++ +V G+ Sbjct: 730 HKATVEFQVEDSGEGISGDFLPSLFDSFTQADITYGKKHQGSGLGLAISQRLVQMMGGEI 789 Query: 793 YIFSTPAKGTLIEIIFPL 810 + STP +G++ L Sbjct: 790 QVQSTPGRGSVFSFALTL 807 >gi|90425281|ref|YP_533651.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] gi|90107295|gb|ABD89332.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] Length = 864 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 131/246 (53%), Gaps = 11/246 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+ W +++L A+ ++ KS F+A +SHEIRTP+ A++G + + + R + Sbjct: 317 IARWWIRQDQLISD---AQSANAAKSTFVAMMSHEIRTPMNAVLGLATNLLDSRL----D 369 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 I +G+ +LDI+ND+LD SK+E+G+++L S + V A+S+V A Sbjct: 370 AEQRRSVVGIHDAGDALLDILNDILDFSKLEAGRLSLESIAFSPEALVESALSIVLPRAT 429 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + + +R ++P L D ++Q+ LN++SNA+ FTPSG ++ + ++E Sbjct: 430 ARGLRVRNQIDPSLPIALQGDAGRIRQVLLNLMSNAVKFTPSGEVVVTTKCRWADESFAA 489 Query: 740 R---VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + DTG+G+ ++ F Q +S R G+GLGL + K +V+ G+ + S Sbjct: 490 LEWIIADTGIGIAEQDIGSLFTDFAQADSSISRRFGGSGLGLAICKRLVEQMGGEIQVSS 549 Query: 797 TPAKGT 802 KGT Sbjct: 550 AYGKGT 555 >gi|294653541|ref|NP_714785.2| histidine kinase sensor protein [Leptospira interrogans serovar Lai str. 56601] gi|293630747|gb|AAN51800.2| histidine kinase sensor protein [Leptospira interrogans serovar Lai str. 56601] Length = 841 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 96/309 (31%), Positives = 156/309 (50%), Gaps = 25/309 (8%) Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 L Q NH +E L+L+L+ TL++ +LL+L+ L + Sbjct: 403 LAQQLTQAFNH--SEDLALELKSTLQE---NIETHNELLALK------------ELQNTN 445 Query: 561 ISEWKQEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 + Q + + L A+ AE + KS FLA +SHEIRTPL IIG E K+ PL Sbjct: 446 LEFQVQSRTRELLKARDDAEFANKVKSQFLASMSHEIRTPLNGIIGLIEQFKST---PLD 502 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + N I +SG +L I+ND+LD SK+E K+NL E V E I + A Sbjct: 503 ESQQ-HIRNLIQKSGENLLKIINDILDFSKLEEDKINLELHEFYWKETVEETIGIFLYQA 561 Query: 680 NEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQII--ISTTHTSNEE 736 +K +++ ++ + I + + D R + Q+ N++SNA+ FT SG I S + E Sbjct: 562 TQKGLVLSVDYSPDFIDKSVGDKRRITQVLSNLISNAVKFTDSGKIQIRAFSEKIETKIE 621 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 ++V D+G+G+ +++ + F Q+ +S + GTGLGL ++K +V+ GK ++ Sbjct: 622 YKIQVIDSGIGIPREKIDLLFQKFFQLDSSISRKYGGTGLGLAISKKLVELMNGKIHVSQ 681 Query: 797 TPAKGTLIE 805 +KG+ E Sbjct: 682 NKSKGSTFE 690 >gi|239905207|ref|YP_002951946.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239795071|dbj|BAH74060.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 853 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 129/254 (50%), Gaps = 9/254 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L D++ + + L+ A+ A+ + KS+FLA +SHEIRTPL ++G +++++ Sbjct: 448 LIREDVTARIEMERTLTAARNEAQAANQTKSEFLANMSHEIRTPLNGVLGMLQLLRDT-- 505 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 PL EYA+ +S + ++ D+LD+S++E+GKM + E L AV+EA+ L Sbjct: 506 -PL-TAEQGEYADLAIQSSRRLTRLLADILDLSRVEAGKMAILCESFELARAVTEAVELF 563 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII----ISTT 730 + A + + +R +P R+ D +Q+ N++ NA+ FT G + + Sbjct: 564 RPSARQAGVELRVYVDAALPARVAGDAARFQQVLANLVGNALKFTAKGSVAVEAYPLPPR 623 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + V DTG G+ + +L + +PF Q +G GLGL + K++V+ G Sbjct: 624 REGETRALFSVADTGCGIADADLTRLFEPFVQGSRGYSRNAQGAGLGLSICKSLVELMGG 683 Query: 791 KFYIFSTPAKGTLI 804 + S +GT I Sbjct: 684 NIAVDSEVGRGTTI 697 >gi|312885917|ref|ZP_07745549.1| histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311301724|gb|EFQ78761.1| histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1437 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 134/256 (52%), Gaps = 20/256 (7%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++K + A+ AEK + KS FLA +SHEIRTP+ +IG + ++ N Sbjct: 902 ELNKQKIQEQAARLEAEKANQAKSVFLATMSHEIRTPMNGVIGMASLLVETDL----NTE 957 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 EYA I G+ +++++ND+LD SKIESGKM++ L ++ E + L + Sbjct: 958 QREYAETIITCGDSLVNVINDILDFSKIESGKMDIEHIDFDLRHSIEEVMDLFGPRVALR 1017 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----E 736 I + N+PR I+ D +KQ+ +N+++NAI FT G++ + + + + Sbjct: 1018 GIDLIYEIDYNVPRQIIGDSLRLKQVLINLINNAIKFTEK-GEVFVKISLLKQDDHGGID 1076 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV---------DA 787 + V DTG+G+ +L KPF Q+ +S + GTGLGL +++ +V ++ Sbjct: 1077 LAFTVTDTGIGIPEEKLSNLFKPFSQVDSSTTRKYGGTGLGLVISERLVKLMGDEIWAES 1136 Query: 788 NMGKFYIFSTPAKGTL 803 N GK +FS K + Sbjct: 1137 NFGKGSVFSFSIKAEI 1152 >gi|281426053|ref|ZP_06256966.1| two-component system sensor histidine kinase/response regulator [Prevotella oris F0302] gi|281399946|gb|EFB30777.1| two-component system sensor histidine kinase/response regulator [Prevotella oris F0302] Length = 1337 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/244 (32%), Positives = 122/244 (50%), Gaps = 8/244 (3%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE-VIKNQRFGPLGNPRYIEY 626 K + HAK I E+ S K F VSHEIRTPLT IIG +E ++ QRF Sbjct: 798 KYEQQHAKDIEERNQS-KIRFFTNVSHEIRTPLTVIIGLAESLLHTQRF----TADIYNK 852 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I R+ NL+ D++++LLD K E +L E V V ++ + YAN + + Sbjct: 853 LQGIYRNSNLLRDLISELLDFKKHEQSLAHLCVEAVDWSAFVGSICNMFKEYANSNDVTL 912 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 + + + D R ++++ N++SNA+ TP GG + + TT +VILRV DTG Sbjct: 913 NVNEGTD-AEVWIDKRQMRKVVNNLISNALKHTPQGGNVNV-TTECDGRQVILRVTDTGK 970 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L F Q + + + GTG+GL L + +V + G + S +GT + Sbjct: 971 GIAETDLAHVFDCFYQARDFESLTEMGTGIGLNLTQNIVQQHHGTISVDSVINEGTTFVV 1030 Query: 807 IFPL 810 PL Sbjct: 1031 TLPL 1034 >gi|229186843|ref|ZP_04313998.1| hypothetical protein bcere0004_43840 [Bacillus cereus BGSC 6E1] gi|228596580|gb|EEK54245.1| hypothetical protein bcere0004_43840 [Bacillus cereus BGSC 6E1] Length = 567 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 100/376 (26%), Positives = 181/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ L + + Sbjct: 220 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEEYLDRLYY--------E 271 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 +H TEI+ L +E+I + K K + L + I++ F Sbjct: 272 SFHH--TEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 324 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 325 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 368 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L V + + + Sbjct: 369 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHM 427 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+GG + + Sbjct: 428 VLDNKAGEKEISLQVNTLKRVS-VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDK 486 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 487 YNAYI-KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 545 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 546 VDSEVGEGTTFTVVLP 561 >gi|171059161|ref|YP_001791510.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170776606|gb|ACB34745.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 846 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 101/360 (28%), Positives = 168/360 (46%), Gaps = 32/360 (8%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYP----------------VEDILRKPFTVF 500 I+E+T + ++ +G I N LFGY V D + F Sbjct: 324 IIESTPSAMVVVEADGTIARANTRAEALFGYDAGGMSGLAVDRLVPERVRDRHATHRSGF 383 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLG----STKEEKLLSLRIIIKKLPFSSCYSL 556 + + M + E+ + +L + +G +T E + +I + L Sbjct: 384 MSNGSTRTMGQGI-ELFACRKDGSLFPVEIGLAPLTTGEMRQTIASVIDITQRKAMQAEL 442 Query: 557 TMHDISEWKQEKNK---LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 T H +Q + L +A+ AE+ + K+ FLA +SHEIRTPL AI G + +I+ Q Sbjct: 443 TQHRDRLEEQVAARTVELVNARNEAERLAQVKAQFLANMSHEIRTPLNAIGGMAHLIRRQ 502 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + + + ++R+ +L ++N +L++SKI++G ++L EPVS+ V E I Sbjct: 503 GL----SEKQTRQMDSLERASAHLLSVINSILELSKIDAGALHLASEPVSVTSLVHEVID 558 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHT 732 L + A +K I +R A + D ++Q LN +SNAI FT SG +I + Sbjct: 559 LQRQQATDKHITLRCELALRTDAWVGDPTRLRQALLNYVSNAIKFTGSGAVLIRVDPVDE 618 Query: 733 SNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 ++R V+DTG+G++ + + K F Q NS + GTGLGL + + MV MG Sbjct: 619 DAASALIRFEVQDTGIGISPDAMPRLFKAFEQADNSHTRQYGGTGLGLAITR-MVARQMG 677 >gi|145598493|ref|YP_001162569.1| signal transduction histidine kinase [Yersinia pestis Pestoides F] gi|145210189|gb|ABP39596.1| signal transduction histidine kinase [Yersinia pestis Pestoides F] Length = 1333 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 137/256 (53%), Gaps = 11/256 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DIS+ K + +L A+ AE + KS FLA +SHE+RTP+ AI+G E+ I++ R Sbjct: 715 DISQRKTVERQLEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLELEIRSNR---- 770 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P + + +S ++ +++D++D +KIE+G++++H V + + +L Q Sbjct: 771 --PVEKDTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSIHPTAVDFHQEMERMFTLYQPI 828 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736 ANE+ + ++IP +L AD+ V+Q+ N+L NA+ FT G + T S+E+ Sbjct: 829 ANERGLRFSGWLDDHIPPLLMADMLRVRQVMGNLLGNALKFTEQGSVSVDITWEPSDEQH 888 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + + + DTG+G++ +PF Q + R G+GLGL + ++ GK + Sbjct: 889 GVMNIDITDTGIGISPAAQATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGKIAL 948 Query: 795 FSTPAKGTLIEIIFPL 810 S KGT + I PL Sbjct: 949 ESQLGKGTSLLITLPL 964 >gi|150398438|ref|YP_001328905.1| histidine kinase [Sinorhizobium medicae WSM419] gi|150029953|gb|ABR62070.1| histidine kinase [Sinorhizobium medicae WSM419] Length = 826 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 81/254 (31%), Positives = 134/254 (52%), Gaps = 7/254 (2%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT +I++ + + L+ + K + K+DF+ VS+E+R+PLT IIGF++++K F Sbjct: 569 LTFVNITDSVRVERALTEKNEALRKADALKNDFVHHVSYELRSPLTNIIGFADLLKTPVF 628 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L N R EY ++I S +L+L IVND+LD++ +++G + L V+L + + + + Sbjct: 629 GEL-NERQAEYVDHIATSSSLLLTIVNDILDLATVDAGIVELELAEVNLIDLIDDVTQQM 687 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 E + +RT +N+ RI AD + +KQI + +L+NA +F P G I + + Sbjct: 688 GDRLVESGVSLRTDAPDNLGRITADQQRLKQIFIKLLTNAANFAPDGSTIELKCWREGS- 746 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V DTG G+ L F S RG G GLGL + ++ V + G I Sbjct: 747 DFAFSVTDTGPGIPQDVLNTVFNRF----ESYGQRG-GAGLGLSIVESFVSLHHGNVSIR 801 Query: 796 STPAKGTLIEIIFP 809 S +GT + P Sbjct: 802 SKEGEGTEVTCRIP 815 >gi|303241560|ref|ZP_07328060.1| histidine kinase [Acetivibrio cellulolyticus CD2] gi|302590878|gb|EFL60626.1| histidine kinase [Acetivibrio cellulolyticus CD2] Length = 1240 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/262 (31%), Positives = 138/262 (52%), Gaps = 7/262 (2%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE-VIKNQRFGPLG 619 I+E K+ ++ L ++ K+DF + VSHE+RTPLT I+G E V+ Q + Sbjct: 585 ITEHKEIESMLIETNNKLKELDQAKTDFFSNVSHELRTPLTIILGQVEAVLSGQYYKNTL 644 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P + I + +L ++N LLD SKI++GKM L+ +PV+++ +S IS V+ A Sbjct: 645 EPNS-DIFKTIQSNALRLLKLINTLLDFSKIQAGKMTLNRQPVNINRFLSSYISAVKSSA 703 Query: 680 NEKRILIRTSFANNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 ++K I F +N D + + N++SNA+ FT S G III Sbjct: 704 SQKNI--NMIFVDNADDTFGFIDKDLFEAVIANLISNALKFTDSEGYIIIELNKLDTSFE 761 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 I+ V+D+G+G+ +L+ F QI NS+ + GTG+GL K +V+ + GK + S Sbjct: 762 IV-VKDSGIGIPKDKLDTIFDRFSQIENSKSSKVRGTGIGLAYTKEIVELHEGKISVSSI 820 Query: 798 PAKGTLIEIIFPLYDTSHPHDC 819 KG++ + P+ ++ + C Sbjct: 821 LGKGSVFAVSLPVCESKNASKC 842 >gi|297568711|ref|YP_003690055.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296924626|gb|ADH85436.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 510 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 132/253 (52%), Gaps = 9/253 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + + L AK+ AE + KS FLA +SHE+RTPL AIIG+SE++ + G Sbjct: 247 ELEAQSRLLQQAKETAESANRAKSRFLANMSHELRTPLNAIIGYSELLL-EDASEWGEWE 305 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ--LYAN 680 E I +G +L +++D+LDISKIE+G+++LH E V + +++ ++ ++ + N Sbjct: 306 ISEDLEKIKSAGQHLLMLISDILDISKIEAGRLDLHLEEVQWEPLLNDVVNTIRPLVVKN 365 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEV 737 R+ + T + D ++Q+ N+LSNA FT + G+I++ + + Sbjct: 366 NNRLQVDTPPEEIT--LFTDATKLRQVLYNLLSNATKFT-TDGEIMLKASLCRLRRQPRL 422 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V D+G+GM+ +L K +PF Q +S + GTGLGL +++ G S Sbjct: 423 EFAVSDSGIGMSEEQLAKIFQPFTQADSSTTRKYGGTGLGLVISRYFCRMMGGDIKATSR 482 Query: 798 PAKGTLIEIIFPL 810 P G + PL Sbjct: 483 PGAGATFTVSLPL 495 >gi|217037907|gb|ACJ76425.1| hybrid sensor kinase RscS [Aliivibrio fischeri] Length = 927 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 107/377 (28%), Positives = 185/377 (49%), Gaps = 25/377 (6%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E E +L + E D I I++++G + N++ S L G +EDI K L+ + Sbjct: 263 EKEKAKLALVAEYAHDAIFILDKQGRLTWINQSYSALSGNTLEDIEGKDLPSILQLDKIK 322 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFSSCYSLTMH------D 560 N I+ L +T I+ T K +L I + P MH D Sbjct: 323 HANI----IILLQSLETGTSISFELTNHHKDGTLFWIDVSITPILEPNGNIMHYIAVERD 378 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I++ K+ ++KL A A+ + KS FLA +SHE+RTPL I+G +++I++ + + Sbjct: 379 ITKKKELEDKLIKAANKADVSNRAKSTFLATMSHELRTPLNGILGMAQIIESN----IKD 434 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQL 677 + + SG+ +L ++N++LD SKIE K+ L+ F V + E ++ + + + Sbjct: 435 KEQHKQIKMLLESGDHLLFLLNEILDFSKIEQNKLELNHASFYFVDIIEPITN--TYLSV 492 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----S 733 N+ I + NN + D ++QI N++SNA+ FT G I ++ +HT Sbjct: 493 CENKGLKFIIDNKINNEIVFIGDKPRIRQIIFNLISNAVKFTHEGS-ITLNFSHTLTGKG 551 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + V ++++DTGVG+ L+ +P+ Q S + GTGLGL + K + D G Sbjct: 552 KQAVQIKIKDTGVGIRENRLKHIFEPYIQAEASTTRQYGGTGLGLAIVKQLTDIMRGYIS 611 Query: 794 IFSTPAKGTLIEIIFPL 810 + S+ KG+ ++ PL Sbjct: 612 VSSSEGKGSCFTLVLPL 628 >gi|227114441|ref|ZP_03828097.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 928 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/253 (33%), Positives = 128/253 (50%), Gaps = 7/253 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + P Sbjct: 421 DVSARVKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSL-PQD 479 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + + E +S S Sbjct: 480 ANRLVAAMN---NSSSLLLKIISDILDFSKIESEQLKIEACEFAPHEVISHITSNYLPLV 536 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +KR+ + N+P + D ++Q+ N+LSNAI FT +G II + + Sbjct: 537 VKKRLTLYCFIDPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDTG--CIIFEVGCRDGYLE 594 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 VRDTGVG+ E K PF Q + Q +GTGLGL + + +V+ G I S P Sbjct: 595 FVVRDTGVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITIESEP 654 Query: 799 AKGTLIEIIFPLY 811 G+L + PLY Sbjct: 655 GLGSLFGVRIPLY 667 >gi|225567986|ref|ZP_03777011.1| hypothetical protein CLOHYLEM_04059 [Clostridium hylemonae DSM 15053] gi|225163274|gb|EEG75893.1| hypothetical protein CLOHYLEM_04059 [Clostridium hylemonae DSM 15053] Length = 1194 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 120/228 (52%), Gaps = 18/228 (7%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA-NYIDRSGNLVLDIVND 643 KSDFL+R+SHEIRTP+ AIIG S + +G+ IE + I S +L ++ND Sbjct: 677 KSDFLSRMSHEIRTPMNAIIGMSTIAAQ----SIGDDEQIEDCISKIGISSRFLLSLIND 732 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL-- 701 +LD+S+IESGKM L E + +E ++ S+ A K + + I +LAD Sbjct: 733 ILDMSRIESGKMLLKSERIPTEEFLNGINSICYSQAAVKNV----DYECIIDPVLADYYV 788 Query: 702 ---RSVKQIALNILSNAIHFTPSGGQIIISTT--HTSNEEVILR--VRDTGVGMTNYELE 754 ++Q+ +NILSNAI FT GG++ S + + +LR V DTGVGM L Sbjct: 789 GDAMKLQQVLINILSNAIKFTGEGGKVTFSAAERRKTKTDAVLRFIVNDTGVGMNEDFLP 848 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +PF Q GTGLGL ++K +VD GK + S GT Sbjct: 849 HIFEPFSQESTGTTALYGGTGLGLAISKNIVDLMDGKITVRSIKGIGT 896 >gi|126656186|ref|ZP_01727570.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Cyanothece sp. CCY0110] gi|126622466|gb|EAZ93172.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Cyanothece sp. CCY0110] Length = 1191 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 114/408 (27%), Positives = 194/408 (47%), Gaps = 46/408 (11%) Query: 446 KMEIEVMQLCSILE---ATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 K++ ++ Q +ILE ATS G+ + + E + N+++ + +G VED L K + L Sbjct: 652 KVQHQLHQANAILENLYATSPVGLCLYDHELKFVRINQSLVESYGLEVEDALGKTSSEVL 711 Query: 502 ----EQNTPSVMNHYLTE--ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-Y 554 Q P + T I+S++LR T EK+ S + C Sbjct: 712 PELGRQIEPLLRQVLETNAPIISIELRGR----TPADPAAEKVWSASYYPVDVLEDQCGV 767 Query: 555 SLTMHDISEWKQEKNKL--SHAKKIAEKES---------------SHKSDFLARVSHEIR 597 M DI+E ++ L S A+ I +KE+ KS+FLA +SHEIR Sbjct: 768 GGVMIDITERTHAEDSLRESEAQLIQQKEALEDAIAIAQAADFANQAKSEFLANMSHEIR 827 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ +I GFS+++ + NP+ + + + N +L ++ND+LD SKIE+ K++L Sbjct: 828 TPMNSICGFSDLLLRSQL----NPKQRHWIEILQANSNRLLALINDILDFSKIEARKLHL 883 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716 + +L+ + E A K + + ++PR ++ D ++Q+ N++SNAI Sbjct: 884 NPREFNLETLLQEVRFSFTPQAERKGLQLTHEIEPDVPRHLIGDDFRLQQVLSNLVSNAI 943 Query: 717 HFTPSGGQIIISTTHTSNEEV--------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 FT +G ++ I+ + EV V+DTG+G++ E +PF Q+ +S Sbjct: 944 KFTETG-EVKIAVSQQGETEVNGGIIVPLRFSVQDTGIGISPDAQENLFQPFTQVDSSAT 1002 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 R GTGLGL + + +V G+ ++ S G+ PL HP Sbjct: 1003 RRYGGTGLGLTICRRIVQLMGGEIHVDSEVDVGSTFWFTVPLQQPDHP 1050 >gi|159045872|ref|YP_001534666.1| sensor histidine kinase/response regulator [Dinoroseobacter shibae DFL 12] gi|157913632|gb|ABV95065.1| sensor histidine kinase/response regulator [Dinoroseobacter shibae DFL 12] Length = 819 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/277 (27%), Positives = 143/277 (51%), Gaps = 11/277 (3%) Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 S++++ ++ SL ++ I++ + + +L+ A+ AE + KS FLA +SHE+RTP Sbjct: 168 SIKLVERRGEDGDIVSLCLN-ITDTIKREQELTLARTRAEAANRAKSAFLANMSHELRTP 226 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 + ++ SE++ + Y I +SG +L I+ND+LD SK+E+ K+ LH Sbjct: 227 MNGVVAMSELLNESAL----DEEQALYVETIRKSGEALLVIINDVLDYSKMEAEKLQLHP 282 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHF 718 P L+ + + + L + A EK + + + +P + D ++Q+ N+L NA+ F Sbjct: 283 APFDLERLMHDVVMLTKPTAQEKSVDLMLDYDIFLPSHFIGDQGRLRQVMTNLLGNAVKF 342 Query: 719 TPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 T G ++I +E+I+ + DTG+G+ ++ F Q + + EGTG Sbjct: 343 TLEGHVLIRVIGMPPEDGTQEIIVSIEDTGIGIAPEMIDHIFGEFNQAEDERNRAFEGTG 402 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPL 810 LGL + K ++D G+ ++ S +G+ I PL Sbjct: 403 LGLAITKQLIDLMGGEIWVDSEIGEGSCFSFRIALPL 439 >gi|300248807|gb|ADJ95232.1| ExpS [Erwinia chrysanthemi] Length = 922 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 128/237 (54%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + +Y Sbjct: 275 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTQL----TTTQKDYLQT 330 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RS N +L+I+ND+LD SK+E+GK+ L P SL + E I L+ A+EK + + + Sbjct: 331 IERSANNLLNIINDVLDFSKLEAGKLVLENIPFSLHNTLDEVIMLLAHTAHEKGLELTLN 390 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTG 745 +++P + + D ++QI N+L NAI FT G I I N V+L +++DTG Sbjct: 391 IQHDVPEQFVGDPLRLQQIITNLLGNAIKFTEQGNIDIRIEKRKQENLRVLLEIQIKDTG 450 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + + + F Q S + GTGLGL + + +V G S +GT Sbjct: 451 IGIAEAQQTQLFQAFRQADTSISRQHGGTGLGLVITQRLVREMGGDISFHSKLNQGT 507 >gi|260903020|ref|ZP_05911415.1| putative lipoprotein [Vibrio parahaemolyticus AQ4037] gi|308108337|gb|EFO45877.1| putative lipoprotein [Vibrio parahaemolyticus AQ4037] Length = 785 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 131/254 (51%), Gaps = 8/254 (3%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 MH++ KQ ++L AE+ + KS FLA +SHE+RTP+ ++G S++I + P Sbjct: 246 MHNL---KQLNSELEAETDKAERAAKAKSSFLAAMSHELRTPMNGVLGISQLIAEETKEP 302 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + E+ I SG ++ I+ND+LD SK+E K+ L P L++ ++ S +Q Sbjct: 303 VTK----EHIKVILDSGQHLMTILNDILDFSKVEENKLELEEAPFHLEQVLTPVCSAIQP 358 Query: 678 YANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 +EK I LI + N D ++QI N+ NA+ FT G +I + ++ +++ Sbjct: 359 LIDEKSIELIVENDVPNNTEFTGDCARLRQILFNLAGNAVKFTNEGHVLIRTELNSEDKQ 418 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +++ V DTG+G+ + + F Q +S R GTGLGL + K + + G + S Sbjct: 419 LLIIVSDTGIGIAPDKQGRVFNSFEQADSSTTRRFGGTGLGLAIVKKLTELMGGSITLKS 478 Query: 797 TPAKGTLIEIIFPL 810 GT + P+ Sbjct: 479 VEGVGTQFIVTLPI 492 >gi|157373767|ref|YP_001472367.1| histidine kinase [Shewanella sediminis HAW-EB3] gi|157316141|gb|ABV35239.1| Histidine kinase [Shewanella sediminis HAW-EB3] Length = 1200 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/253 (32%), Positives = 131/253 (51%), Gaps = 14/253 (5%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ K + + AK+ AE + +KS+FLA +SHEIRTP+ AIIG ++ + Sbjct: 663 THKDITRHKSNEVAMLEAKQDAESANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLT 722 Query: 617 PLGNPRYIEYANYIDRSG---NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 P + +Y+D++G +L I+ND+LD SKIE+GK+ L LD+ + A+ Sbjct: 723 P-------QQEDYLDKAGFSAQSLLRIINDILDFSKIEAGKLELERVGFPLDKVLDHALD 775 Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH 731 L L A +K + + IL D + Q+ +N+LSNA+ FT SG ++ Sbjct: 776 LNALKAQQKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQSGEIELGCEDVG 835 Query: 732 TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + + L+ VRDTG+G++ + F Q S + GTGLGL ++K +V Sbjct: 836 ERDHRITLKFWVRDTGIGISKEQQASLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMG 895 Query: 790 GKFYIFSTPAKGT 802 GK + S G+ Sbjct: 896 GKMQVQSEMGVGS 908 >gi|88797263|ref|ZP_01112853.1| probable sensor/response regulator hybrid [Reinekea sp. MED297] gi|88780132|gb|EAR11317.1| probable sensor/response regulator hybrid [Reinekea sp. MED297] Length = 656 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 128/248 (51%), Gaps = 5/248 (2%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + KL ++ A + K+ FLA +SHEIRTP+ AIIG E+++++ P N Y Sbjct: 159 EQKLKDSEARARQAMEAKATFLANMSHEIRTPMNAIIGMIELLQHE--DP--NQTQKRYL 214 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + S N+++ I++D+LD+SKIE+GK++L +P + + + + +S+ +N K IL+ Sbjct: 215 ATLRNSSNVLMRIIDDILDVSKIEAGKLSLEKKPFPVRQVLHQCLSVYTQISNRKNILLT 274 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 +P +I D ++Q+ +N++SNA FT G ++ + + V D+GV Sbjct: 275 GRVDAAVPIQIQGDSSRLQQVLMNLISNAFKFTDQGHILVRVECTEQKDRLRFSVEDSGV 334 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ + F Q+ S GTGLGL + + +V+ G +I S G Sbjct: 335 GIAEEAQASLFERFNQVDQSASRSSGGTGLGLAIVREIVELWGGDVWIRSRSGHGATFFF 394 Query: 807 IFPLYDTS 814 P+ +S Sbjct: 395 DIPVQQSS 402 >gi|327182634|gb|AEA31081.1| putative histidine kinase [Lactobacillus amylovorus GRL 1118] Length = 618 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 99/373 (26%), Positives = 177/373 (47%), Gaps = 41/373 (10%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E +L S+L SDG+ +R G + N+ ED++ KP L Sbjct: 261 ERRRLDSVLSHMSDGVLATDRHGNVSVVNQMALNFLNVKEEDVINKPIAEVLG------- 313 Query: 510 NHYLTEILSLDLRQTLEKITLG---STKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEW 564 L + S DL + ++I + +T++E +L S +I + F S +HD++E Sbjct: 314 ---LKDTSSQDLISSQKEIVVTIDPNTRDEMILHASFSLIKRVTGFVSGSVCVLHDVTE- 369 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGNPRY 623 Q+KN E S K F++ VSHE+RTPLT++ + E + + P P++ Sbjct: 370 -QQKN-----------EDSQKQ-FVSNVSHELRTPLTSLQAYIEALNEGAWKDPNIAPKF 416 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 +E + + ++ ++NDLL +S+++ G + E V+L++ V+ ++ + + Sbjct: 417 LEVTQ---QETSRMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDK 473 Query: 684 IL-------IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 I+ N + D + Q+ NI++NAI ++P G I + T N Sbjct: 474 NNDKKKKYTIKRELGNQALWVEIDTDKMMQVIDNIMNNAIKYSPDGSVITVRLTQNKNH- 532 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 VIL + D G+G+ +L K F ++ ++ GTGLGL +AK +V+A+ G+ + S Sbjct: 533 VILSISDQGLGIPRKDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADS 592 Query: 797 TPAKGTLIEIIFP 809 + KG+ I P Sbjct: 593 SEGKGSTFYISLP 605 >gi|289432115|ref|YP_003461988.1| multi-sensor signal transduction histidine kinase [Dehalococcoides sp. GT] gi|288945835|gb|ADC73532.1| multi-sensor signal transduction histidine kinase [Dehalococcoides sp. GT] Length = 581 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 99/364 (27%), Positives = 176/364 (48%), Gaps = 41/364 (11%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L ++LE DGI +++REG I N A ++F ++ F ++ +H + Sbjct: 251 LSAVLERMGDGIFLLDREGSINLLNHASERIFKLEAGGVIGHSFV-------EAIRDHEI 303 Query: 514 TEILSL---DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 + +Q + + L + K L II L S Y + + D+SE + + Sbjct: 304 NAVFERAKSSGKQEMGFVELTAGKR----FLGIIATPLVSQSGYLVLVQDLSELR----R 355 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L ++ DF+A +SHE+RTP+T++ +E ++ G +P A +I Sbjct: 356 LEKVRR----------DFVANISHELRTPITSLKLLTETLQE---GAASDPDV--AAGFI 400 Query: 631 DRSGNLVLD----IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 D+ +L +D +V +L D+S IESG+ L+ +P + A+ A + A I + Sbjct: 401 DKI-HLEVDKLAQLVTELSDLSAIESGQAVLNLQPGDIRTAIKLAAERLSPQAERAGITL 459 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 +P++ D V+Q+ +N++ NAI FTP GG+I I T ++ +++ V D+G+ Sbjct: 460 GVELPETLPQVRLDENRVEQVLVNLVHNAIKFTPKGGKIKIG-VRTQSQTLVVYVTDSGI 518 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + + F ++ S+ G GTGLGL ++K +V A+ G + S KG Sbjct: 519 GIPEDDLTRVFERFYKVDKSRS--GGGTGLGLAISKHIVQAHGGSIWAESVYGKGATFSF 576 Query: 807 IFPL 810 PL Sbjct: 577 SLPL 580 >gi|228929635|ref|ZP_04092653.1| hypothetical protein bthur0010_43190 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229124154|ref|ZP_04253346.1| hypothetical protein bcere0016_44390 [Bacillus cereus 95/8201] gi|228659456|gb|EEL15104.1| hypothetical protein bcere0016_44390 [Bacillus cereus 95/8201] gi|228830022|gb|EEM75641.1| hypothetical protein bthur0010_43190 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 567 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 100/376 (26%), Positives = 181/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ L + + Sbjct: 220 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEEYLDRLYY--------E 271 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 +H TEI+ L +E+I + K K + L + I++ F Sbjct: 272 SFHH--TEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 324 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 325 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 368 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L V + + + Sbjct: 369 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHM 427 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+GG + + Sbjct: 428 VLDNKAGEKEISLQVNTLKRVS-VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDK 486 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 487 YNAYI-KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 545 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 546 VDSEVGEGTTFTVVLP 561 >gi|167648714|ref|YP_001686377.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167351144|gb|ABZ73879.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 593 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 126/228 (55%), Gaps = 7/228 (3%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE+ + KS F+A +SHE+RTP++AI+ + + + + + +A I +G ++ Sbjct: 217 AEEAVAAKSAFVAMISHELRTPISAILAGAARLHSD----VPDAASKSHAQLIADAGAMM 272 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 ++NDLLD+S++++G+M + P L +A+++ + L + A K + +R A N+PR Sbjct: 273 RTLLNDLLDLSRLDAGRMAVDQSPFDLRQAMADTLRLWRPDAQRKGLRLRVEGAANLPRW 332 Query: 698 LA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VRDTGVGMTNYELE 754 +A D ++Q+ N+LSNAI FTP G + E +I V DTG G+T +L Sbjct: 333 VAGDSLRLRQVLNNLLSNAIKFTPRGAVTVRLAARDEGEHLIFEAIVADTGPGLTEEQLS 392 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + PF Q+ +S G+GLGL +++ + G + S P KG+ Sbjct: 393 RLFTPFDQLASSVVREHGGSGLGLVISRELTRLMGGDLTVTSKPGKGS 440 >gi|148654588|ref|YP_001274793.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148566698|gb|ABQ88843.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 695 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 93/368 (25%), Positives = 181/368 (49%), Gaps = 23/368 (6%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 L + + G+A+++++G +L N A ++G P +R PF V L+ + Sbjct: 334 HLGQVFSSIPGGLALMDQQGRVLRHNPAWLTIWGLP-SGSMRDPFYVPLDLVPLLLPRLR 392 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 L+ G ++ SL + + P L++ + +L Sbjct: 393 DPLALT-------GMCAEGQRAPTEVQSLLVQLTS-PHQELMLLSVPTRDSFGSLTGRLW 444 Query: 573 HAKKIA-EKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + E+E+ KS+FL+ +SHE+RTPLT+I+G++E++ + F P E+ + Sbjct: 445 IVSDVTREREADRLKSEFLSIISHELRTPLTSIMGYTELLLAREFSP---AERREFVQTV 501 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 N + IV DLL ++++E+G + L+ VSL + VS+ + + + K ++ Sbjct: 502 YNEANHLYQIVEDLLGVTRLEAGNVRLNQWAVSLRQIVSDLTAQLNNQISGKHTML-IDI 560 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------HTSNEEVILRVR 742 ++P + AD V+Q+ +N+++NA+ ++P+GG+I ++ + H + V + V Sbjct: 561 PPHLPPVYADRDKVRQVLVNLITNAVKYSPNGGEIRLTISDNVELPPDHPRGKFVRVAVS 620 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D G+G+ +L + + F ++ N R GTGLGL +AKA+V+ + G+ + S KG+ Sbjct: 621 DQGIGIAPEDLPRIWERFYRVDNGNTRRIGGTGLGLSIAKALVELHGGRIWAESKLNKGS 680 Query: 803 LIEIIFPL 810 P+ Sbjct: 681 TFYFTLPV 688 >gi|299142472|ref|ZP_07035604.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Prevotella oris C735] gi|298576194|gb|EFI48068.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Prevotella oris C735] Length = 1337 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/244 (32%), Positives = 122/244 (50%), Gaps = 8/244 (3%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE-VIKNQRFGPLGNPRYIEY 626 K + HAK I E+ S K F VSHEIRTPLT IIG +E ++ QRF Sbjct: 798 KYEQQHAKDIEERNQS-KIRFFTNVSHEIRTPLTVIIGLAESLLHTQRF----TADIYNK 852 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I R+ NL+ D++++LLD K E +L E V V ++ + YAN + + Sbjct: 853 LQGIYRNSNLLRDLISELLDFKKHEQSLAHLCVEAVDWSAFVGSICNMFKEYANSNDVTL 912 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 + + + D R ++++ N++SNA+ TP GG + + TT +VILRV DTG Sbjct: 913 NVNEGTD-AEVWIDKRQMRKVVNNLISNALKHTPQGGNVNV-TTECDGRQVILRVTDTGK 970 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L F Q + + + GTG+GL L + +V + G + S +GT + Sbjct: 971 GIAETDLAHVFDCFYQARDFESLTEMGTGIGLNLTQNIVQQHHGTISVDSVINEGTTFVV 1030 Query: 807 IFPL 810 PL Sbjct: 1031 TLPL 1034 >gi|317128901|ref|YP_004095183.1| multi-sensor hybrid histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315473849|gb|ADU30452.1| multi-sensor hybrid histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 907 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/260 (30%), Positives = 137/260 (52%), Gaps = 3/260 (1%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ K L K + S +KS+FLA +SHE+RTPL +I+ S+++ G L + + Sbjct: 480 ELEKIKEDLEEKNKSIQLSSRYKSEFLANMSHELRTPLNSILILSQMLSENANGNL-SKK 538 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 IE+A I SG +LD++ND+LD+SKIESGK+ ++ E + +++ + A +K Sbjct: 539 QIEHAETIYSSGKDLLDLINDILDLSKIESGKVEVYPEELFIEDMRAFVERQFHPIAEQK 598 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR 740 + P IL D + +KQI N+LSNA FT G + + +++ + +V+ Sbjct: 599 GLQFNCYIHQETPSILYTDDQRLKQILKNLLSNAFKFTAQGTVRFEVHPSYSESTKVVFS 658 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 + DTG+G+ + E + F Q + GTGLGL +++ + + G+ + S K Sbjct: 659 IIDTGIGIPPEKQESVFEAFHQGDGTTTREYGGTGLGLSISRELANLLGGRIEVVSEDGK 718 Query: 801 GTLIEIIFPLYDTSHPHDCI 820 G+ + P YD D + Sbjct: 719 GSTFSLYLPDYDKMSDADFV 738 >gi|149280172|ref|ZP_01886295.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Pedobacter sp. BAL39] gi|149229009|gb|EDM34405.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Pedobacter sp. BAL39] Length = 1437 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 136/251 (54%), Gaps = 20/251 (7%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + +L A K E + K F + ++H+++ P++A+ G ++++KN R LG Y Sbjct: 892 QNEQLESAVKALESSNQTKDRFFSILAHDLKNPISALTGLADLLKN-RLNMLGPSEITSY 950 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP--VSLDEAVSEAISLVQLYANEKRI 684 I RS + V +V +LLD ++ +S + LH++P +SL E V++ I L Q+ N K I Sbjct: 951 VYDISRSTHSVNTLVMNLLDWARTQSAE--LHYQPSYISLHELVAKNIYLAQIQLNNKNI 1008 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 R ++ I AD + + + NI+ N+I FTP G+I IS+ +T+ E++ + + D Sbjct: 1009 HCRIDI-DSKHVIYADYQMINTVIRNIIGNSIKFTPVAGEIEISSFYTA-EQITISICDN 1066 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQI-----RGE-GTGLGLPLAKAMVDANMGKFYIFSTP 798 GVGM+ +LE Q+ N Q + GE GTGLGL + + + N G+ I S P Sbjct: 1067 GVGMSGMQLE-------QLENQQPMPSLGTAGETGTGLGLQICRDFIKRNQGQLKIESLP 1119 Query: 799 AKGTLIEIIFP 809 +G+ + I P Sbjct: 1120 GRGSSVIITLP 1130 >gi|332530115|ref|ZP_08406065.1| signal transduction histidine kinase-like protein [Hylemonella gracilis ATCC 19624] gi|332040588|gb|EGI76964.1| signal transduction histidine kinase-like protein [Hylemonella gracilis ATCC 19624] Length = 814 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/261 (30%), Positives = 137/261 (52%), Gaps = 8/261 (3%) Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + + + L + + E + ++ L AK+ AE + KS+FLA +SHEIRTP+ I+G Sbjct: 264 QGMDLGALADLVLQVVREREADRVTLQEAKQAAEAANRAKSEFLAVMSHEIRTPMNGIVG 323 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 + + G P+ Y + RS + +L ++ND+LD SKIE+G++ L P L Sbjct: 324 MTGLA----LGTTLTPQQRGYLTMVRRSADALLGVINDVLDFSKIEAGRLTLDPRPFRLH 379 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ 724 V ++ + A EK + + A + R++ D ++QI +N++ NAI F+ +G Sbjct: 380 ALVRSTLASLDNQAREKGLRLAYEPAEDFSHRLIGDPGRLRQILVNLVGNAIKFSETGAI 439 Query: 725 II-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 + + T + +V+LR V+D G+G+T + + +PF Q S GTGLGL + Sbjct: 440 TVRVRTEALRDGQVVLRFEVQDQGIGITPSQQQAIFQPFTQADASITRHYGGTGLGLAIC 499 Query: 782 KAMVDANMGKFYIFSTPAKGT 802 +V A G+ + S P +G+ Sbjct: 500 GKLVQAMEGEIGVRSAPGQGS 520 >gi|260900170|ref|ZP_05908565.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] gi|308110109|gb|EFO47649.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] Length = 632 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 130/254 (51%), Gaps = 8/254 (3%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + + ++ + +L + AE + KS+FLA +SHEIRTP+ IIG + ++ + + + Sbjct: 220 VQKVREHQAELEAERDKAEVANRKKSEFLATMSHEIRTPMNGIIGVASLLSDTKL----D 275 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P+ E+ ID S ++ I++D+LD SK+E+GK+ L E + + + ISL + A Sbjct: 276 PQQKEFVEIIDNSSQSLMTIIDDILDFSKVEAGKVELASETYHFRQLLDDVISLHTVKAQ 335 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EE 736 +K + + + +P + D +KQ+ N+LSNA+ FT G ++ + H N + Sbjct: 336 QKNLQLLSDIDPKLPAEVQGDEGRLKQVLNNLLSNAVKFTERGHVKLLVSLHEQNNDIAQ 395 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V RV D+G+G+ + + F Q S + GTGLGL + +V G + S Sbjct: 396 VRFRVVDSGIGIAKEHQQAVFERFQQADGSTTRKYGGTGLGLAICAQLVHIMGGDIKLTS 455 Query: 797 TPAKGTLIEIIFPL 810 G+ + PL Sbjct: 456 ELGLGSCFDFTIPL 469 >gi|256827994|ref|YP_003156722.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577170|gb|ACU88306.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 758 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/245 (32%), Positives = 128/245 (52%), Gaps = 12/245 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 KQ +L A++ A++ + KS FLA +SHEIRTPLT I+G +E+ G GNP Sbjct: 367 KQTLLQLQSARRKADEANEAKSLFLAHMSHEIRTPLTGIMGLAELA----IGNPGNPGVQ 422 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EY I +SG +L I+ND+LD SK+E+GK+ L + + I+ + EK + Sbjct: 423 EYLTLIRQSGQNLLHIINDILDFSKVEAGKIELQKNRFNARSMLEATIAFFKPGIREKGV 482 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--- 740 + A +P+ ++ D ++QI N++ NA+ FT G+I + T ++EE R Sbjct: 483 TLSLVLAEELPQAVVGDENRIRQIFFNLVGNAVKFTEK-GKIELRLTGLTSEENSARMML 541 Query: 741 ---VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + D+G G+ + + + F Q +GTGLGL + K +++A G + ST Sbjct: 542 HFEIMDSGCGIPADKQDSIFERFTQAARFPTRTYQGTGLGLAIVKQLIEAMGGSIGVRST 601 Query: 798 PAKGT 802 GT Sbjct: 602 EGVGT 606 >gi|45441480|ref|NP_993019.1| putative histidine protein kinase sensor [Yersinia pestis biovar Microtus str. 91001] gi|45436341|gb|AAS61896.1| putative Histidine protein kinase sensor [Yersinia pestis biovar Microtus str. 91001] Length = 1289 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 137/256 (53%), Gaps = 11/256 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DIS+ K + +L A+ AE + KS FLA +SHE+RTP+ AI+G E+ I++ R Sbjct: 715 DISQRKTVERQLEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLELEIRSNR---- 770 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P + + +S ++ +++D++D +KIE+G++++H V + + +L Q Sbjct: 771 --PVEKDTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSIHPTAVDFHQEMERMFTLYQPI 828 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736 ANE+ + ++IP +L AD+ V+Q+ N+L NA+ FT G + T S+E+ Sbjct: 829 ANERGLRFSGWLDDHIPPLLMADMLRVRQVMGNLLGNALKFTEQGSVSVDITWEPSDEQH 888 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + + + DTG+G++ +PF Q + R G+GLGL + ++ GK + Sbjct: 889 GVMNIDITDTGIGISPAAQATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGKIAL 948 Query: 795 FSTPAKGTLIEIIFPL 810 S KGT + I PL Sbjct: 949 ESQLGKGTSLLITLPL 964 >gi|300867481|ref|ZP_07112132.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300334475|emb|CBN57300.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1174 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/274 (30%), Positives = 144/274 (52%), Gaps = 15/274 (5%) Query: 540 SLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 SLR I +L + + + +I+E K + L A A+ + KS+FL+ +SHE Sbjct: 649 SLRQIAVQLAIAIQQCTLFEQAKTEIAERKLAEQALRKAVIAADAANLAKSEFLSSMSHE 708 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 +RTPL AI+GFS+V+ R L N + ++ I+R+G +L ++ND+L++SKIE+GK Sbjct: 709 LRTPLNAILGFSQVMV--RDSSLKN-EHQQHLQIINRAGEHLLSLINDILEMSKIEAGKS 765 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSN 714 L+ +L + + +L A K++ + + +P+ + D ++Q+ +N++ N Sbjct: 766 QLNEASFNLIRLLGTLEEIFRLKAESKKLQLIFDLSKEVPQFVKGDEGKLRQVLINLVGN 825 Query: 715 AIHFTPSGGQIIISTTHTSNE------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 AI FT +G + + NE + + DTG G+ E+ K PF Q Q+ Sbjct: 826 AIKFTETGSVTLRVKLKSENEISSLALPLQFEIEDTGPGIAAEEMNKLFAPFEQTKTGQK 885 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + +GTGLGLP+++ V G + ST G+ Sbjct: 886 SQ-QGTGLGLPISRKFVQMMGGDISVTSTVGLGS 918 >gi|328469859|gb|EGF40770.1| putative two-component sensor [Vibrio parahaemolyticus 10329] Length = 632 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 130/254 (51%), Gaps = 8/254 (3%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + + ++ + +L + AE + KS+FLA +SHEIRTP+ IIG + ++ + + + Sbjct: 220 VQKVREHQAELEAERDKAEVANRKKSEFLATMSHEIRTPMNGIIGVASLLSDTKL----D 275 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P+ E+ ID S ++ I++D+LD SK+E+GK+ L E + + + ISL + A Sbjct: 276 PQQKEFVEIIDNSSQSLMTIIDDILDFSKVEAGKVELASETYHFRQLLDDVISLHTVKAQ 335 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EE 736 +K + + + +P + D +KQ+ N+LSNA+ FT G ++ + H N + Sbjct: 336 QKNLQLLSDIDPKLPAEVQGDEGRLKQVLNNLLSNAVKFTERGHVKLLVSLHEQNNDIAQ 395 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V RV D+G+G+ + + F Q S + GTGLGL + +V G + S Sbjct: 396 VRFRVVDSGIGIAKEHQQAVFERFQQADGSTTRKYGGTGLGLAICAQLVHIMGGDIKLTS 455 Query: 797 TPAKGTLIEIIFPL 810 G+ + PL Sbjct: 456 ELGLGSCFDFTIPL 469 >gi|254445248|ref|ZP_05058724.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198259556|gb|EDY83864.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 800 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 127/236 (53%), Gaps = 8/236 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + Q K + A AE + KS FLA +SHEIRTP+ A+IG + V+ + + Sbjct: 266 QLDQAIAKANQAALEAELANQAKSSFLASMSHEIRTPMNAVIGLTGVLLETQI----DDD 321 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +Y I SG+ +L ++ND+LD SKIES KM L P+ V EA+ L+ A+ K Sbjct: 322 QRDYLQTIRASGDSLLVLINDILDFSKIESDKMELEERPIDPRCCVEEALELLAEKASSK 381 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR 740 + + + +IP IL D ++QI +N++ NAI FT G ++++ T T ++ Sbjct: 382 GLELCYEASEDIPFGILGDATRLRQILVNLIGNAIKFTEKGQIEVLLKTRETDQRNCVIE 441 Query: 741 --VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V+D+G+G+ + + K F Q+ +S + GTGLGL ++K + + G+ + Sbjct: 442 FTVKDSGIGIPADKQSRLFKSFSQVDSSTTRKYGGTGLGLAISKKLTELMGGEMRV 497 >gi|22126271|ref|NP_669694.1| histidine protein kinase sensor [Yersinia pestis KIM 10] gi|108807298|ref|YP_651214.1| signal transduction histidine kinase [Yersinia pestis Antiqua] gi|21959245|gb|AAM85945.1|AE013841_10 putative Histidine protein kinase sensor [Yersinia pestis KIM 10] gi|108779211|gb|ABG13269.1| signal transduction histidine kinase [Yersinia pestis Antiqua] Length = 1283 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 137/256 (53%), Gaps = 11/256 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DIS+ K + +L A+ AE + KS FLA +SHE+RTP+ AI+G E+ I++ R Sbjct: 709 DISQRKTVERQLEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLELEIRSNR---- 764 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P + + +S ++ +++D++D +KIE+G++++H V + + +L Q Sbjct: 765 --PVEKDTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSIHPTAVDFHQEMERMFTLYQPI 822 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736 ANE+ + ++IP +L AD+ V+Q+ N+L NA+ FT G + T S+E+ Sbjct: 823 ANERGLRFSGWLDDHIPPLLMADMLRVRQVMGNLLGNALKFTEQGSVSVDITWEPSDEQH 882 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + + + DTG+G++ +PF Q + R G+GLGL + ++ GK + Sbjct: 883 GVMNIDITDTGIGISPAAQATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGKIAL 942 Query: 795 FSTPAKGTLIEIIFPL 810 S KGT + I PL Sbjct: 943 ESQLGKGTSLLITLPL 958 >gi|326628479|gb|EGE34822.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 948 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/261 (31%), Positives = 132/261 (50%), Gaps = 7/261 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 442 VLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 500 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 501 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNYITANYL 557 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT G I+ + Sbjct: 558 PLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG--CIVLHVRCDGD 615 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 616 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 675 Query: 796 STPAKGTLIEIIFPLYDTSHP 816 S P G+ + PLY +P Sbjct: 676 SEPGMGSQFTLRIPLYGAQYP 696 >gi|323694521|ref|ZP_08108689.1| hypothetical protein HMPREF9475_03553 [Clostridium symbiosum WAL-14673] gi|323501435|gb|EGB17329.1| hypothetical protein HMPREF9475_03553 [Clostridium symbiosum WAL-14673] Length = 1312 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 85/275 (30%), Positives = 141/275 (51%), Gaps = 17/275 (6%) Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 ++I+ + ++ Y + E +Q++N LS A + A+ + KSDFLA +SH+IRTP+ Sbjct: 901 KVILTRTDMTATY------LKEQEQQRN-LSEALEFAKAANKAKSDFLAAMSHDIRTPMN 953 Query: 602 AIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 AIIG +E+ L + I E I S ++ I+ND+LDIS+IESGK + E Sbjct: 954 AIIGMTELA----LSDLSDREQIHESFTTIKSSSAHLISIINDILDISRIESGKAEMLQE 1009 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 S E + + + A K ++ S + D+ + ++ N+LSNAI FTP Sbjct: 1010 QFSSREEHQKIVKRIAPLAEAKGLVFTHSLDIRHDCCIGDVARLNRVVDNLLSNAIKFTP 1069 Query: 721 SGGQIIISTTH---TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 GG++ S + ++ R V DTG+GM + +PF + +S EGTG Sbjct: 1070 EGGRVDYSFAELPCCRPDHILCRITVTDTGIGMDEHTRACLFEPFFRHLDSAAGNVEGTG 1129 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 LG+ + K+ V+ + G + S P +G+ + P+ Sbjct: 1130 LGMSIVKSTVELSGGSIEVESEPGRGSKFIVKIPI 1164 >gi|71908504|ref|YP_286091.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Dechloromonas aromatica RCB] gi|71848125|gb|AAZ47621.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 858 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/239 (34%), Positives = 127/239 (53%), Gaps = 9/239 (3%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++L+ A+ S KS+FLA +SHEIRTP+ AIIG + +++ + P + I A Sbjct: 332 DQLAEQVSQAKAASQAKSNFLANMSHEIRTPMNAIIGLTHMLRRDKVTPAQGEKLIRIAG 391 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 D +L ++ND+LD+SKIE+GK+ L E S +E + S+V L A K I + Sbjct: 392 AADH----LLSVINDILDLSKIEAGKVELEAENFSPEEMLQRICSIVLLRAQAKGIELVV 447 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVILR--VRDT 744 A +P +L D+ + Q LN LSNA+ FT G I+ E +V++R V D+ Sbjct: 448 D-AGELPALLNGDVTRLGQALLNYLSNAVKFTEKGSIILRGNVLKETEKDVLVRFEVEDS 506 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 G+G++ +L F Q S GTGLGL +++ + G+ STP KG++ Sbjct: 507 GIGISPEKLAHLFTAFEQASASISRHYGGTGLGLAISRHIAMLMGGEAGASSTPGKGSI 565 >gi|325920273|ref|ZP_08182220.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC 19865] gi|325549247|gb|EGD20154.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC 19865] Length = 1061 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 126/241 (52%), Gaps = 8/241 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H ++IAE+ S K+ FLA + HE+RTP+T ++G SE++ + + Y I R Sbjct: 778 HKQEIAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTSL----DNKQRSYTESIRR 833 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--RILIRTSF 690 +G +L +VND LD+++IESG++ L +P S+ + V+E L+ A E+ R + Sbjct: 834 AGAHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEGLMAPLAQERGLRFSLEVGL 893 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 +I D+ ++QI LN+LSNAI FT G + TT S + + V DTG G+ Sbjct: 894 LGDI-TASGDVTRIRQILLNLLSNAIKFTERGVVGLKLTTLGSYQGLRFEVADTGPGINA 952 Query: 751 YELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + + F Q ++ R G+GLGL + + + A G + S GT + P Sbjct: 953 EQKARLFQRFEQGDGARTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTRFVVDLP 1012 Query: 810 L 810 L Sbjct: 1013 L 1013 >gi|308071607|ref|YP_003873212.1| sensor protein yycG [Paenibacillus polymyxa E681] gi|305860886|gb|ADM72674.1| Sensor protein yycG [Paenibacillus polymyxa E681] Length = 609 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 117/475 (24%), Positives = 212/475 (44%), Gaps = 40/475 (8%) Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 ++++ K V + IA ++ L D K NN ML T + HTI + Sbjct: 153 VISQGKIVGAVYIAASMTELYDTMK-RINNVFLSGMLIALALTAVLGVVLAHTITHPIK- 210 Query: 410 SLAMTFIPFEKA-NQFPENMPQNG--------IEPEDVDTRINK--RKMEIEVMQLCSIL 458 MT E A +F + MP G + + +R+ + + E E +L SIL Sbjct: 211 --VMTRHATEVAEGKFDQQMPVFGDDEIGRLSVAFNYMTSRLREALSQNEEEKEKLSSIL 268 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 SDG+ + G ++ NR S + G N + ++ +L Sbjct: 269 TNMSDGVVATDDNGRVILVNRRASAMLGV----------------NENEMTGRHIAVLLG 312 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578 +D +T E + GS+ LL L + P + T E+ ++ + + Sbjct: 313 IDPEET-EALYSGSSAS-TLLQLEPAGQDEPIVIRVTFTPIHRREFGI-TGTIAVLQDVT 369 Query: 579 EKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGN 635 E+E + + +F+A VSHE+RTPLT I ++E + + G + P+ E + I Sbjct: 370 EQEEMETTRREFVANVSHELRTPLTTIRSYAEALDD---GAMAEPQVAERFVGVIRNETE 426 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 ++ +V DLL +S+++S + L +P + E + E +K I I Sbjct: 427 RMIRLVTDLLHLSRLDSNEAPLRMQPTDVMEMLDEVADRFSFQMKQKHIRSGMFVEQGIG 486 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 +++ D ++Q+ N++SNA+ +TP GG I I S + + V+DTG+G+ +L++ Sbjct: 487 KVVIDRDQIEQVLDNLMSNALKYTPDGGSIRIEARRNSEGMLSISVQDTGIGIPKKDLDR 546 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F ++ ++ GTGLGL +A+ +V A+ G+ ++ S +GT P+ Sbjct: 547 IFERFYRVDKARSRNMGGTGLGLSIAREIVKAHGGQIFLESEYGQGTCTTFTLPM 601 >gi|298492023|ref|YP_003722200.1| GAF sensor signal transduction histidine kinase ['Nostoc azollae' 0708] gi|298233941|gb|ADI65077.1| GAF sensor signal transduction histidine kinase ['Nostoc azollae' 0708] Length = 593 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 84/266 (31%), Positives = 136/266 (51%), Gaps = 19/266 (7%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A++ AE+ S KS+FLA VSHEIRTPL +IG ++I G P E+ Sbjct: 325 ELEAARQKAEEASRLKSEFLANVSHEIRTPLNGMIGLLKLILE---GMADGPEEHEFVQD 381 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 +L I+ND+LD +KIE+GKM++ PV L E ++ S V+ A K + ++ Sbjct: 382 AHDLSIHLLGILNDILDFAKIEAGKMDIRCGPVRLHELFNDVESFVRPQAEMKNLSLQMQ 441 Query: 690 FANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----------V 737 IL + + + Q+ LN++ NAI FT GG I + + V Sbjct: 442 MPTTSDEIIILGNYQRLLQVMLNLVGNAIKFTHKGGVTISADLVLKKAKGQSQPQHPGIV 501 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 +RV DTG+G++ + +K + F Q+ S+ GTGLGL +++ +++A G+ + +S Sbjct: 502 KVRVADTGIGVSLDQQDKLFQLFSQVDGSRTRPHGGTGLGLTISQKLIEAMGGEVHFYSL 561 Query: 798 PAK-GTLIEIIFPLYDT---SHPHDC 819 + G+ + PLY P +C Sbjct: 562 GEELGSTVTFTVPLYQQPVLCSPSEC 587 >gi|307155062|ref|YP_003890446.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306985290|gb|ADN17171.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1305 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 136/243 (55%), Gaps = 6/243 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK+ A+ + KS+FLA +SHE+RTPL AI+GF++++ R L N + ++ Sbjct: 821 ELKKAKERADAANQAKSEFLANMSHELRTPLNAILGFTQLLA--RDSSL-NQKQQDFVGI 877 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RSG +L ++ND+L++SKIE+G++ L+ L ++ + QL A K + + Sbjct: 878 IGRSGEHLLSLLNDVLEMSKIEAGRITLNENDFDLYRLLNILEEMFQLKAQSKNLQLIFH 937 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL-RVRDTGVG 747 ++P+ I D ++Q+ +N++ N I FT +G ++ N + IL V DTG G Sbjct: 938 CDPDVPQYIKTDESKLRQVLINLIGNGIKFTETGSVMLRVRVSPENSQAILFEVEDTGPG 997 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + EL+ + F Q + ++ + EGTGLGLP+++ V+ G + ST KG+ Sbjct: 998 IGTEELDILFQAFVQTVSGRKSQ-EGTGLGLPISQKFVELMGGNISVNSTLHKGSTFSFE 1056 Query: 808 FPL 810 P+ Sbjct: 1057 IPV 1059 >gi|253699608|ref|YP_003020797.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251774458|gb|ACT17039.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 916 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 121/238 (50%), Gaps = 8/238 (3%) Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 + + S KS FLA + HEIRTPL A++G S + + + Y I S Sbjct: 431 LVQAASRAKSQFLANMGHEIRTPLNAVMGLSRLALKTEL----DSKQRGYLEKIGSSSRT 486 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 +L+I+ND+LD SK+E+GK+ L ++L E + + A EK I R A ++P+ Sbjct: 487 LLNIINDILDFSKMEAGKLELEQTELNLYEVLGNISDMHHSKAQEKGIEFRVRLAPDLPK 546 Query: 697 -ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYE 752 ++ D + Q+ N+++NA+ FT G ++ E EV V+DTG+G+ + Sbjct: 547 KLVGDPLRLTQVLNNLIANAVKFTEKGEVVVAIKPLRRGEGEVEVHFCVQDTGIGIAPEQ 606 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + K PF Q +S R GTGLGL +++ +V+ G+ + S P G+ PL Sbjct: 607 MGKIFTPFTQADSSTTRRYGGTGLGLSISRQLVELMRGELQVESVPGSGSSFSFTVPL 664 >gi|197336014|ref|YP_002155471.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio fischeri MJ11] gi|121308572|dbj|BAF43671.1| bioluminescence regulatory protein [Vibrio fischeri] gi|197317504|gb|ACH66951.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio fischeri MJ11] Length = 744 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 84/259 (32%), Positives = 137/259 (52%), Gaps = 14/259 (5%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T ++ E K++ K A++ AEK + KSDFLAR+SHEIRTPL I+G S ++K+ Sbjct: 344 TFSELIEAKEDSYK---AQRAAEKLAQVKSDFLARMSHEIRTPLNGILGISSLLKSSNL- 399 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 N + N + + G +L ++ND+LD S+IE K+ ++ P L + + ++ Sbjct: 400 ---NREQQKQVNILHQGGEHLLAVLNDILDFSQIEQEKLKINSAPFKLSDVLENINAIYF 456 Query: 677 LYANEKRILIRTSFANNI-PRIL--ADLRSVKQIALNILSNAIHFTPSGG-QIIIS-TTH 731 K + S N++ P + +D + QI N+LSNA+ FT G ++ +S H Sbjct: 457 PICKNKNVFF--SIENHVNPDVFINSDQVRLTQILFNLLSNAVKFTEKGKVKLTLSLNKH 514 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 S+ + V DTGVG+ E + +PF Q S+ + G+GLGL + K ++D GK Sbjct: 515 NSDYYLQFSVDDTGVGICAEEQARMFEPFEQSGFSESRKFGGSGLGLAIVKQLLDLLKGK 574 Query: 792 FYIFSTPAKGTLIEIIFPL 810 I ST G+ ++ P+ Sbjct: 575 ITINSTIGVGSTFSVLIPV 593 >gi|126174168|ref|YP_001050317.1| integral membrane sensor hybrid histidine kinase [Shewanella baltica OS155] gi|125997373|gb|ABN61448.1| Hpt sensor hybrid histidine kinase [Shewanella baltica OS155] Length = 924 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 133/249 (53%), Gaps = 11/249 (4%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++L+ AK+ AEK + K++ L +SHEIRTPL I G E+++N + P+ ++ + Sbjct: 385 HELALAKQEAEKANERKTEHLTNISHEIRTPLNGITGALELLRNTQL----TPKQMDLRD 440 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 N +L I+N+LLD S+IE+ ++ L+ + + + +A+ +Q K I ++ Sbjct: 441 TAYNCANSLLAIINNLLDFSRIEADQIELNLQSYPILKLADDAMITIQSRVVNKPITLKC 500 Query: 689 SF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 AN + L D V+QI +N+L N+ FT GQI++ + + V DTGVG Sbjct: 501 LVNANVAEKALLDPLRVRQILVNLLGNSAKFT-EAGQILLR-IEVVKQHLYFSVEDTGVG 558 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + ++ +PF Q + + GTGLGLP++ + G+ +FST +G+ + Sbjct: 559 VAIQDQQRIFEPFAQTCHHK----SGTGLGLPISAKLASKMQGQLTMFSTLGEGSTFILD 614 Query: 808 FPLYDTSHP 816 PL D + P Sbjct: 615 LPLIDPTAP 623 >gi|197658986|emb|CAR47859.1| putative signal transduction histidine kinase [Rhodococcus sp. PY11] Length = 632 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 84/260 (32%), Positives = 156/260 (60%), Gaps = 12/260 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS+ + +++ AK+ AE+ + KS+FL+R+SHE+RTPL +IIGF+++++ + G Sbjct: 241 DISDRNRVSIEIASAKEEAERANHAKSEFLSRMSHELRTPLNSIIGFTQLMQTEHGG--- 297 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 E I ++G+ +L ++N +L+ S+IESG +++ PV+ + ++ AI +V+ A Sbjct: 298 ---NDESLGRILQAGHHLLSLINQILEFSRIESGSVDVALSPVNACDPLAAAIDMVRPIA 354 Query: 680 NEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + I + + I +LA+ ++Q+ LN+L NA+++ GG I ++T N +V+ Sbjct: 355 AARSIDVSCDYHAAIYQHVLANSDRLQQVLLNVLLNAVNYNNIGGLIRVTTRR--NADVL 412 Query: 739 -LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 +RV DTG GM++ ++ + PF ++ ++ EGTGLGL L+K +V+A G+ + T Sbjct: 413 RIRVEDTGHGMSHEDVSRIFVPFERLEGTRSTV-EGTGLGLALSKDLVEAMGGRLGVERT 471 Query: 798 -PAKGTLIEIIFPLYDTSHP 816 P +G++ + L D P Sbjct: 472 APGQGSVFFVDLQLTDGGDP 491 >gi|121997915|ref|YP_001002702.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila SL1] gi|121589320|gb|ABM61900.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila SL1] Length = 502 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 139/260 (53%), Gaps = 6/260 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DI ++K + +L+ A+ AE+ KS+FL+ +SHE+RTPL AI+GF+++I Sbjct: 100 ALLDIDDYKAREAELAEARVAAERTDRAKSEFLSAMSHELRTPLNAIVGFAQLIYADE-- 157 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L EY +I +G + D+V D+LD+++IE+G+ +L E V + + + + + LV+ Sbjct: 158 ELDTRTRNEYLRHILSAGWHLRDLVGDILDLARIEAGRASLAPETVRIPDLLQDCLRLVR 217 Query: 677 LYANEKRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A E + +R + + AD +KQ+ LN+L+NAI + GG +++S + Sbjct: 218 DQAAEYSVSLRLEEPEHPVGVCVWADRLRLKQVVLNLLTNAIKYNREGGSVVLSYGRDAA 277 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +V + V D+G+G+ + F ++ + EG G+GLPLA + G+ + Sbjct: 278 GQVWVDVVDSGLGIDPQCRAGLFETFDRL-GRETGSIEGVGIGLPLALRLSRLMGGELQL 336 Query: 795 F-STPAKGTLIEIIFPLYDT 813 S P +G+ + P D Sbjct: 337 VDSVPDQGSRFRLTLPGIDA 356 >gi|269963520|ref|ZP_06177845.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831695|gb|EEZ85829.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 878 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 129/251 (51%), Gaps = 11/251 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + E ++ ++ K+ A + KS FLA +SHEIRTPL IIG +E++ + Sbjct: 355 MEEQNRQTEEILKTKESAISANRAKSVFLASMSHEIRTPLNGIIGMTEILSQSDL----S 410 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 E ID S + +L ++ND+LD+SKIESG + L + E V +++ L Q A Sbjct: 411 DHQKEVLTDIDTSSHTLLTLLNDILDLSKIESGHLQLSLIETDIREVVYQSMILFQSKAT 470 Query: 681 EKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEE 736 K++ + + I PRI+ D +KQI +N++SNA+ FT G I + + + + Sbjct: 471 SKQLELNINLDERIPPRIMVDDHRIKQIIMNLVSNAVKFTHE-GHISVDVDYQESPTQKS 529 Query: 737 VIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V L RV DTGVG+ +L +PF Q + GTGLGL + + +V GK Sbjct: 530 VFLTFRVTDTGVGIERDKLNTIFEPFTQEDEGISRQFGGTGLGLAICRQLVAMMGGKLTA 589 Query: 795 FSTPAKGTLIE 805 S+ GT E Sbjct: 590 TSSKGIGTSFE 600 >gi|119776242|ref|YP_928982.1| putative integral membrane sensor protein [Shewanella amazonensis SB2B] gi|119768742|gb|ABM01313.1| multi-sensor hybrid histidine kinase [Shewanella amazonensis SB2B] Length = 1141 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 85/252 (33%), Positives = 138/252 (54%), Gaps = 6/252 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E +Q + +L AK IAE ++ ++ FLA +SHEIRTP+ AIIGFS+++ +F P Sbjct: 511 DITERRQMEQELLEAKDIAEAAATARAAFLANMSHEIRTPMNAIIGFSDILLESQFEPEK 570 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + R+++ N+ +S +L ++ND+LD +K++ GK+ L SL + + E IS + L A Sbjct: 571 H-RHLKTINHAAKS---LLHLLNDVLDSAKLDKGKLELEVRDFSLVQELDEVISTLWLQA 626 Query: 680 NEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K + + + +P ++Q+ N++SNA+ FT GQ+ ++ V Sbjct: 627 RRKGLQLTMEVSPKLLPCYAGSPERIRQVLTNLVSNAVKFTEK-GQVRLTVNPGQGNHVD 685 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG+GM+ +L+K PF Q S R GTGLG ++K +V+ G S Sbjct: 686 FVVEDTGIGMSPEQLDKIFDPFTQADASMSRRFGGTGLGTTISKQLVELMGGHISAGSEL 745 Query: 799 AKGTLIEIIFPL 810 KG+ PL Sbjct: 746 GKGSRFCFSLPL 757 Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust. Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 5/83 (6%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 +D+ R ++ K ++ +I+E DGI I+ GII N+A KL G+ ++++ + Sbjct: 260 KDISLRASESKRRVQ-----AIMETAIDGIVTIDSHGIITDVNQATEKLLGWRADELIGQ 314 Query: 496 PFTVFLEQNTPSVMNHYLTEILS 518 + + S + YL L+ Sbjct: 315 NVKILMPDPFHSEHDGYLARYLA 337 >gi|283851683|ref|ZP_06368962.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573013|gb|EFC20994.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 838 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 133/246 (54%), Gaps = 18/246 (7%) Query: 579 EKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL-------GNPRYIEYANYI 630 EKE K++F++ VSHE+RTPLT+++GF+++I+ ++F L +PR A I Sbjct: 368 EKEVDRMKTEFISTVSHELRTPLTSVLGFAKIIR-RKFADLVAPALAEADPRTWRGAQQI 426 Query: 631 DRS-------GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + G + ++V+D+LDI+K+ESG+ + +SL E A+ A K Sbjct: 427 RENLDIIVAEGERLTELVDDVLDIAKMESGRCEWNMAALSLAEVADHAVKAATPLAARKG 486 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 +++ +P +L D + Q+ LN++ NA+ FT + G++ + E+++ VRD Sbjct: 487 LVLANQVPPTLPLVLGDRDRLVQVFLNLIGNAVKFTAT-GRVDVEAA-LDGPEILVTVRD 544 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG G+ +LE+ + F Q ++ + +GTGLGLP+ + +V+ + G+ + S G+ Sbjct: 545 TGPGIAAGDLERIFEKFKQAGDTLTEKPKGTGLGLPICRQIVERHGGRIWAESEGGAGSA 604 Query: 804 IEIIFP 809 P Sbjct: 605 FRFTLP 610 >gi|171687465|ref|XP_001908673.1| hypothetical protein [Podospora anserina S mat+] gi|170943694|emb|CAP69346.1| unnamed protein product [Podospora anserina S mat+] Length = 1417 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/259 (30%), Positives = 129/259 (49%), Gaps = 12/259 (4%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI QEK +L + A++ S KS FLA +SHEIRTP+T +IG SE++ + Sbjct: 806 QDIQAQAQEKRQLVANEAAAKEASRLKSQFLANMSHEIRTPITGVIGMSELLLDVEL--- 862 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + I RS N +L ++ND+LD SK+ESG++++ SL V + ++ Sbjct: 863 -TEEQRDITENIYRSANALLTVINDILDFSKVESGRLDIEEVQFSLSVIVRDVSKMLSFA 921 Query: 679 ANEKRILIRTSFANNIPR---ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN- 734 A K + + + +I ++ D V+QI N+++N+I FT + G + S + Sbjct: 922 AERKDLAFHSDISEDIETDMVVMGDPGRVRQIITNLVTNSIKFT-NHGHVKFSVFKEKDT 980 Query: 735 ---EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 E+ + DTG+G+ ++ +PF Q S + GTGLGL + K ++D G+ Sbjct: 981 PEITEIKFVIEDTGIGIEEEVRKRLFQPFSQGDASTARKFGGTGLGLTICKHLLDLMKGR 1040 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + ST GT P Sbjct: 1041 MVLESTLGTGTTATFWIPF 1059 >gi|53712343|ref|YP_098335.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52215208|dbj|BAD47801.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 633 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 127/247 (51%), Gaps = 13/247 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ ++ A+ AE+ + KS FLA +SHEIRTPL AI+GFS ++ + Sbjct: 391 KRAHQRMKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLSMVE----DKEEML 446 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EYA I+ + L+L ++ND+LD+SKIESG + H V ++ +SE + +L + Sbjct: 447 EYAGIIETNTELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRIRTDEV 506 Query: 685 LIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + SFA +P+ + D + Q+ N++ NAI FT S G+I I + V Sbjct: 507 SL--SFAERLPQCVFHTDKNRLIQVLTNLVVNAIKFT-SQGEIQIGYRLQDAHTLYFYVS 563 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG GM+ + E + F + Q GTGLGL + K +++ G+ + S KG+ Sbjct: 564 DTGCGMSAEQCEHVFERFVKYNTFIQ----GTGLGLSICKMIIEKLGGEIGVQSESGKGS 619 Query: 803 LIEIIFP 809 + P Sbjct: 620 VFWFTLP 626 >gi|330878817|gb|EGH12966.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 383 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 127/232 (54%), Gaps = 3/232 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ S +KS+FLA +SHE+RTPL + + ++++ + G +++A I +GN +L Sbjct: 130 QRASKYKSEFLANMSHELRTPLNSSLILAKLLA-ENPGENLTAEQVKFAESIYSAGNDLL 188 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++ND+LDISK+E+GK+ + E S+ V S+ Q A EK++ P +L Sbjct: 189 NLINDILDISKVEAGKLEMRPENSSVSRLVEGLRSMFQPLAAEKKLAFTVDIQAGAPTML 248 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + ++QI N+LSNAI FT +G + + + ++ VRD+G+G+ + Sbjct: 249 FTDRQRLEQILKNLLSNAIKFTEAGA-VSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIF 307 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q + R GTGLGL +++ + G + S P +G++ ++ P Sbjct: 308 EAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLP 359 >gi|251795375|ref|YP_003010106.1| signal transduction histidine kinase, nitrogen specific, NtrB [Paenibacillus sp. JDR-2] gi|247543001|gb|ACT00020.1| signal transduction histidine kinase, nitrogen specific, NtrB [Paenibacillus sp. JDR-2] Length = 606 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/256 (33%), Positives = 136/256 (53%), Gaps = 24/256 (9%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+++ K+ + L ++K+ S A V+HEIR PLTA+ GF++++K++ Sbjct: 368 VIRDLTDRKRSEEMLVRSEKL-----SVIGQLAAGVAHEIRNPLTALKGFTQLLKSK--- 419 Query: 617 PLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GN Y + N +DR + IVN+ + ++K K F LD + IS++ Sbjct: 420 AEGNSFYYDIMTNELDR----INFIVNEFMTLAKPHFSK----FSTRRLDHILHAVISIL 471 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN- 734 + A + IRT F N IP I D +KQ+ +NI+ NAI P GGQI IS S+ Sbjct: 472 ETQAILMNVSIRTEFENCIPSIYCDENQLKQVFINIIKNAIEAMPLGGQITISAAMESDH 531 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E V L +RD G+G+ + + + +PF + +GTGLGL ++ +++ + G I Sbjct: 532 ERVRLTIRDEGMGIPDEIIRQIGQPF------ITTKEKGTGLGLMISSRIIEQHQGLMNI 585 Query: 795 FSTPAKGTLIEIIFPL 810 S P +GT IEII PL Sbjct: 586 SSVPGEGTTIEIILPL 601 >gi|166009411|ref|ZP_02230309.1| sensor histidine kinase/response regulator [Yersinia pestis biovar Antiqua str. E1979001] gi|166210747|ref|ZP_02236782.1| sensor histidine kinase/response regulator [Yersinia pestis biovar Antiqua str. B42003004] gi|167401078|ref|ZP_02306581.1| sensor histidine kinase/response regulator [Yersinia pestis biovar Antiqua str. UG05-0454] gi|165991966|gb|EDR44267.1| sensor histidine kinase/response regulator [Yersinia pestis biovar Antiqua str. E1979001] gi|166207927|gb|EDR52407.1| sensor histidine kinase/response regulator [Yersinia pestis biovar Antiqua str. B42003004] gi|167049467|gb|EDR60875.1| sensor histidine kinase/response regulator [Yersinia pestis biovar Antiqua str. UG05-0454] gi|262361878|gb|ACY58599.1| Histidine protein kinase sensor [Yersinia pestis D106004] gi|262365983|gb|ACY62540.1| Histidine protein kinase sensor [Yersinia pestis D182038] Length = 1242 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 137/256 (53%), Gaps = 11/256 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DIS+ K + +L A+ AE + KS FLA +SHE+RTP+ AI+G E+ I++ R Sbjct: 668 DISQRKTVERQLEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLELEIRSNR---- 723 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P + + +S ++ +++D++D +KIE+G++++H V + + +L Q Sbjct: 724 --PVEKDTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSIHPTAVDFHQEMERMFTLYQPI 781 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736 ANE+ + ++IP +L AD+ V+Q+ N+L NA+ FT G + T S+E+ Sbjct: 782 ANERGLRFSGWLDDHIPPLLMADMLRVRQVMGNLLGNALKFTEQGSVSVDITWEPSDEQH 841 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + + + DTG+G++ +PF Q + R G+GLGL + ++ GK + Sbjct: 842 GVMNIDITDTGIGISPAAQATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGKIAL 901 Query: 795 FSTPAKGTLIEIIFPL 810 S KGT + I PL Sbjct: 902 ESQLGKGTSLLITLPL 917 >gi|119510843|ref|ZP_01629968.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414] gi|119464522|gb|EAW45434.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414] Length = 648 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 81/256 (31%), Positives = 134/256 (52%), Gaps = 10/256 (3%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + W +E L A K A+ + KS FLA SHE+R PL II V+ G N Sbjct: 366 LKAWAEE---LEIAWKEAKTANQIKSQFLATTSHELRNPLNVIINCVRVVHE---GLCDN 419 Query: 621 -PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 IE+ D + +L I+N+LLDISKIE+GK+++ P+ L + + E I+L + Sbjct: 420 REEEIEFLKRADDTAIHLLGIINELLDISKIEAGKLSVVKVPIDLRQILLEVINLQSVNV 479 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K + ++T ++ + AD +KQ+ +NI+ NA FT G I + +H +VI+ Sbjct: 480 QNKGLQLKTDLGTDLIPVEADAAKLKQVLINIIGNATKFTDEGSIRIATISH--KFQVIV 537 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 + DTG+G+ + K +PF + + EGTGLGL +++ +++ G + S Sbjct: 538 SITDTGLGIEPDQQHKLFRPFVMLDGGATRKVEGTGLGLAISRNLIELMGGTITLESAGI 597 Query: 800 -KGTLIEIIFPLYDTS 814 +GT ++I P+ D + Sbjct: 598 NQGTTVKITLPMIDIT 613 >gi|119469631|ref|ZP_01612500.1| putative membrane bound sensor or esterase [Alteromonadales bacterium TW-7] gi|119446878|gb|EAW28149.1| putative membrane bound sensor or esterase [Alteromonadales bacterium TW-7] Length = 936 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 126/232 (54%), Gaps = 8/232 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA VSHEIRTPLTAI+G ++ + N + P + + I R N + ++ND+ Sbjct: 474 KSQFLANVSHEIRTPLTAILGQTDDLMNGLYEP---EQLKDELAIIQRHSNHLKSLINDV 530 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLV--QLYANEKRILIRTSFANNIPRILADLR 702 LD+SKIE+ ++ L+ + + V++ ++ Q A R+++ + L D+ Sbjct: 531 LDLSKIEANRLELNVSCFDMVQLVNDVHAMFNPQAKAKNLRLVLENKVGDEFYTRL-DIM 589 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 VKQI +N+ +NAI FT SG Q++I+ T + ++L V+DTG+GM + +L+ + F Q Sbjct: 590 RVKQILINLCANAIKFTQSG-QVLIALNKTE-QGIVLIVKDTGIGMNSSQLKLIFEYFSQ 647 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 NS R GTGLGL L++ + G + S KG+ P S Sbjct: 648 ADNSISRRFGGTGLGLSLSQQLASMMGGYISVQSEYKKGSQFSFFLPCAQVS 699 >gi|309789904|ref|ZP_07684481.1| PAS sensor protein [Oscillochloris trichoides DG6] gi|308228036|gb|EFO81687.1| PAS sensor protein [Oscillochloris trichoides DG6] Length = 749 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 126/235 (53%), Gaps = 6/235 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA VSHE+RTPLT+IIG++E+++ +GPLG R E ++ + +L ++ D+ Sbjct: 511 KSAFLATVSHELRTPLTSIIGYTEMLQRGLYGPLGE-RMGEPLGHMRTASGTLLRLITDI 569 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD S++E+G + + PV + Q ++ + + +++P I A+ + Sbjct: 570 LDFSRMEAGHLKVDLTPVEPLRTIRSVAGQFQPQILQRSLALDLDLPDHLPYIYANSMRL 629 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +Q+ N++ NAI FT GG I + H + + + VRDTG+G+ + + F +I Sbjct: 630 EQVLTNLIGNAIKFTDQGG--ITVSAHHHADRLRISVRDTGIGIAHEHQDAIFLEFRRIE 687 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 + G G GLGL +++ +V+ G + STP +G+ I P+ T P D Sbjct: 688 QIGRHAG-GAGLGLAISRRLVELMGGTIGLHSTPGEGSTFFIDMPICPT--PADA 739 >gi|295703077|ref|YP_003596152.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium DSM 319] gi|294800736|gb|ADF37802.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium DSM 319] Length = 957 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 96/377 (25%), Positives = 175/377 (46%), Gaps = 38/377 (10%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQNTPSVMNHYLTE 515 IL + +G+ +++ G IL N +S+LF Y + +L+ +L+ + V N Sbjct: 465 ILNSIQEGMQLVDTSGTILQVNTKISELFQYEHQSGLLQLSLDQWLDALSQKVEN----- 519 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL---- 571 LRQ +E I G E+ + K YS E+ K ++ Sbjct: 520 --IGQLRQYVEAICKGEQVEKSFIYYLHTESKRKVIKVYS-------EYVYRKRQMFGVL 570 Query: 572 -SHAKKIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 H E E KS+F++ VSHE+RTPL +++GF+E++ N+ L R +Y Sbjct: 571 FVHRDITKEFEVDQMKSEFVSTVSHELRTPLASVLGFTELMLNK---TLKEERQKKYLTT 627 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I + + ++ND LD+ ++E+GK + D+ + + L++ ++I Sbjct: 628 IYQEAQRLTSLINDFLDVQRMEAGKQ-------TYDKKYQDILPLIKQVIEVQKIQTSKH 680 Query: 690 FANNIP-----RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + I ++ D + Q+ N++SNA+ ++P GG + + + V + ++D Sbjct: 681 EFDMISDQEHFTVMGDKDKLLQLFNNVISNAVKYSPDGGNVTVKV-YQKEHAVYIDIQDE 739 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ N L + F ++ NS + GTGLGL + K +V A+ G + S KGT Sbjct: 740 GIGIPNKALGQLFTKFYRVDNSDMRKIGGTGLGLAIVKEIVKAHGGDITVQSEWKKGTTF 799 Query: 805 EIIFP-LYDTSHPHDCI 820 ++ P LY+ + + I Sbjct: 800 TVVLPLLYEVQYDEEMI 816 >gi|227894304|ref|ZP_04012109.1| histidine kinase [Lactobacillus ultunensis DSM 16047] gi|227863881|gb|EEJ71302.1| histidine kinase [Lactobacillus ultunensis DSM 16047] Length = 621 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 96/373 (25%), Positives = 179/373 (47%), Gaps = 41/373 (10%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E +L S+L SDG+ +R G + N +D++ KP L Sbjct: 264 ERRRLDSVLSHMSDGVLATDRHGNVSVVNHTALSYLNVKEKDVINKPIAEVLG------- 316 Query: 510 NHYLTEILSLDLRQTLEKITLG---STKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEW 564 L + S DL + ++I + T++E +L S +I + F S +HD++E Sbjct: 317 ---LKDRSSQDLISSQKEIVITIDEGTRDEMILHASFSLIKRVTGFVSGSVCVLHDVTE- 372 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGNPRY 623 Q+KN+ S + F++ VSHE+RTPLT++ + E + + P P++ Sbjct: 373 -QQKNEDSQRQ------------FVSNVSHELRTPLTSLQAYIEALNEGAWKDPKIAPKF 419 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY----- 678 +E + + ++ ++NDLL +S+++ G + E V+L++ V+ ++ + Sbjct: 420 LEVTQ---QETSRMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDK 476 Query: 679 --ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 +++K+ I + + D + Q+ NI++NAI ++P GG I + T N Sbjct: 477 NKSHKKKYTINRELGSQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTQNQNH- 535 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 VIL + D G+G+ +L K F ++ ++ GTGLGL +AK +V+A+ G+ + S Sbjct: 536 VILSISDQGLGIPRKDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADS 595 Query: 797 TPAKGTLIEIIFP 809 + +G+ I P Sbjct: 596 SEGRGSTFYISLP 608 >gi|206900464|ref|YP_002250466.1| alkaline phosphatase synthesis sensor protein PhoR [Dictyoglomus thermophilum H-6-12] gi|206739567|gb|ACI18625.1| alkaline phosphatase synthesis sensor protein PhoR [Dictyoglomus thermophilum H-6-12] Length = 815 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 129/233 (55%), Gaps = 6/233 (2%) Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 +A++ KS+F+A VSHE++TPLTAI G+SE++ P + Y I + Sbjct: 460 LAKELDRMKSEFVANVSHELKTPLTAIKGYSELLIKMNLPP---EKVRNYYQIIYKESER 516 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 + ++NDLL++S+IESGK+ L E V + + + E + Q ++ I+++ F Sbjct: 517 LTQLINDLLEVSRIESGKIELKKEMVEIRKVIKERATFFQTQTSKHTIVLQ--FPEYPTF 574 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 IL D + Q+ N+L NAI ++P+GG I + + E++++ V+D G+G+ L Sbjct: 575 ILGDNARLAQVFHNLLDNAIKYSPNGGNIWVRVSDKM-EDIVIEVQDQGIGIPPEHLPHI 633 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F ++ +S + GTGLGL + K++++A+ GK + S +GT I P Sbjct: 634 FDRFYRVDSSLRKSTSGTGLGLSIVKSIIEAHGGKISVASKVGEGTTFTIRLP 686 >gi|205353388|ref|YP_002227189.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273169|emb|CAR38130.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 915 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/261 (31%), Positives = 132/261 (50%), Gaps = 7/261 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 409 VLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 467 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 468 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNYITANYL 524 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT G I+ + Sbjct: 525 PLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG--CIVLHVRCDGD 582 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 583 YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 642 Query: 796 STPAKGTLIEIIFPLYDTSHP 816 S P G+ + PLY +P Sbjct: 643 SEPGMGSQFTLRIPLYGAQYP 663 >gi|158421976|ref|YP_001523268.1| two-component sensor histidine kinase [Azorhizobium caulinodans ORS 571] gi|158328865|dbj|BAF86350.1| two-component sensor histidine kinase [Azorhizobium caulinodans ORS 571] Length = 586 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 102/382 (26%), Positives = 175/382 (45%), Gaps = 28/382 (7%) Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 V R +R + + + +IL + D I +N EG I S N A ++L G+ E+I KP Sbjct: 224 VGRRRAERALGDALSRQRAILASAIDSIVTVNVEGRIESANPATTRLLGWQPEEIAGKPL 283 Query: 498 TVFL---EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554 E TP+ ++TE+ S + +G K+ + + + I ++ S Sbjct: 284 GTLFSLPEGTTPT---DFMTELSSTAKDGGGVRELIGLRKDGGTVPVDVAIGRMRDSGGQ 340 Query: 555 SLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 +L +HDI+E K+ + K++F++ VSHE+RTPLT+I G ++ Sbjct: 341 NLVAVLHDITERKRAE--------------VMKNEFVSTVSHELRTPLTSIAGSLGLLAG 386 Query: 613 QRFG--PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 G P G R + A+ R ++ ++ND+LDI K++S + + VSL E Sbjct: 387 GATGSLPEGAQRLVTIASQNCRR---LVRLINDILDIEKMQSSGITFARDTVSLAEVAER 443 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 ++ +A E ++ + R+ D + Q+ N+LSNA+ F+P+G + +S Sbjct: 444 SVEQNSGFALEHQVALTLEVEPGDLRVTGDADRLIQVLTNLLSNAVKFSPAGSTVEVSVA 503 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + V VRD G+G+ F Q NS + GTGLGL +A+ + D + G Sbjct: 504 R-RGDHVRATVRDHGMGIPESFRSAIFTRFAQADNSDTRQRGGTGLGLAIAREIADHHDG 562 Query: 791 KFYIFSTPAKGTLIEIIFPLYD 812 + GT + P + Sbjct: 563 TLSFETEEGVGTAFHLDLPALE 584 >gi|104782773|ref|YP_609271.1| two-component sensor/response regulator protein [Pseudomonas entomophila L48] gi|95111760|emb|CAK16484.1| putative two-component sensor/response regulator protein [Pseudomonas entomophila L48] Length = 1210 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/259 (33%), Positives = 136/259 (52%), Gaps = 14/259 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DISE + L AK+ A+ + KS FLA +SHEIRTP+ A+IG E+ ++ G L Sbjct: 688 DISERRNLVQDLRLAKQQADDANRAKSTFLATISHEIRTPMNALIGMLELALRRADQGQL 747 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P +E A++ S +L ++ D+LDI++IESG + L EPV L V + Sbjct: 748 DRP-ALEIAHH---SAQDLLGLIGDILDIARIESGHLTLAPEPVDLAMLVESVGRVFDGL 803 Query: 679 ANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736 A K + ++ + + ++ D KQ+ N++SNAI FT GQ+ IS + E Sbjct: 804 ARHKGLALKVAITDAAHCHVMLDPLRFKQVLSNLVSNAIKFTEQ-GQVRISVKLRNGNER 862 Query: 737 ----VILRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + L VRD+G+G+ ++++ PF Q P S R GTGLGL +++ + G+ Sbjct: 863 EAPILDLEVRDSGIGIHEEDVQRLFTPFAQANPYSDGARA-GTGLGLVISRNLCTMMGGE 921 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + S GT + ++ PL Sbjct: 922 LSLQSLQGVGTRVRLVMPL 940 >gi|86750960|ref|YP_487456.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] gi|86573988|gb|ABD08545.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] Length = 879 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 133/234 (56%), Gaps = 22/234 (9%) Query: 588 FLARVSHEIRTPLTAIIGFS------EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 F+A +SHEIRTP+ A++G + + +QR +G I +G+ +L+I+ Sbjct: 339 FVAMMSHEIRTPMNAVLGLANNLLETRLDADQRRAVVG----------IHDAGDNLLEIL 388 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700 +D+LD SK+E+G+++L P S V ++S++ A K + I T ++++PR ++ D Sbjct: 389 DDILDFSKLEAGRLSLELIPFSPHNIVEHSLSMIGPRAIAKGLAIGTDISDDLPRALIGD 448 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR----DTGVGMTNYELEKA 756 ++Q+ LN+LSNA+ FT S G+I+++ SN+ R++ DTG+G+ ++E Sbjct: 449 PGRIRQVLLNLLSNAVKFT-SSGKIVVALECLSNDGSAARIQWTVSDTGIGIDPDKIESL 507 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F Q NS + R G+GLGL +++ +++ G+ + STP +G+ L Sbjct: 508 FSDFVQADNSIRRRFGGSGLGLAISRRLIEQMGGRINVTSTPGQGSAFRFTLTL 561 >gi|60680514|ref|YP_210658.1| putative two-component sensor histidine kinase [Bacteroides fragilis NCTC 9343] gi|60491948|emb|CAH06708.1| putative two-component sensor histidine kinase [Bacteroides fragilis NCTC 9343] Length = 633 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 127/247 (51%), Gaps = 13/247 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ ++ A+ AE+ + KS FLA +SHEIRTPL AI+GFS ++ + Sbjct: 391 KRAHQRMKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLSMVE----DKEEML 446 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EYA I+ + L+L ++ND+LD+SKIESG + H V ++ +SE + +L + Sbjct: 447 EYAGIIETNTELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRIRTDEV 506 Query: 685 LIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + SFA +P+ + D + Q+ N++ NAI FT S G+I I + V Sbjct: 507 SL--SFAERLPQCVFHTDKNRLIQVLTNLVVNAIKFT-SQGEIQIGYRLQDAHTLYFYVS 563 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG GM+ + E + F + Q GTGLGL + K +++ G+ + S KG+ Sbjct: 564 DTGCGMSAEQCEHVFERFVKYNTFIQ----GTGLGLSICKMIIEKLGGEIGVQSESGKGS 619 Query: 803 LIEIIFP 809 + P Sbjct: 620 VFWFTLP 626 >gi|254227791|ref|ZP_04921222.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262395834|ref|YP_003287687.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. Ex25] gi|151939833|gb|EDN58660.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262339428|gb|ACY53222.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. Ex25] Length = 858 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 136/263 (51%), Gaps = 17/263 (6%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ + + + + A+K AEK + ++DFLA++SHEIRTP+ I+G ++++K+ Sbjct: 456 QDITTLIEAEKQSNLARKEAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKD------ 509 Query: 619 GNPRYIEYANYID---RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + E N ID SG +L ++ND+LD SKIE GK N+ P S + + ++ Sbjct: 510 -SVETEEQNNQIDVLRHSGEHLLAVLNDILDFSKIEQGKFNIQKHPFSFTDTIRTLENIY 568 Query: 676 QLYANEKRI--LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-- 731 + K + +I N+ I D + QI N++SN++ FTPSG + + Sbjct: 569 RPICENKGVNLVIENKIDPNV-EIFTDQVRLNQILFNLVSNSVKFTPSGSVRLHAELEQF 627 Query: 732 --TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 N +++ + DTG+G+ +L++ +PF Q + G+GLGL + K++VD Sbjct: 628 YGAENSVLVVEITDTGIGIEPDKLDQMFEPFVQEEATTTREYGGSGLGLTIVKSLVDMLE 687 Query: 790 GKFYIFSTPAKGTLIEIIFPLYD 812 G + S GT I P+ D Sbjct: 688 GDVQVRSQKGLGTTFVITMPVKD 710 >gi|229897321|ref|ZP_04512477.1| putative Histidine protein kinase sensor [Yersinia pestis biovar Orientalis str. PEXU2] gi|4106623|emb|CAA21378.1| unnamed protein product [Yersinia pestis] gi|229693658|gb|EEO83707.1| putative Histidine protein kinase sensor [Yersinia pestis biovar Orientalis str. PEXU2] Length = 803 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 137/256 (53%), Gaps = 11/256 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DIS+ K + +L A+ AE + KS FLA +SHE+RTP+ AI+G E+ I++ R Sbjct: 229 DISQRKTVERQLEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLELEIRSNR---- 284 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P + + +S ++ +++D++D +KIE+G++++H V + + +L Q Sbjct: 285 --PVEKDTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSIHPTAVDFHQEMERMFTLYQPI 342 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736 ANE+ + ++IP +L AD+ V+Q+ N+L NA+ FT G + T S+E+ Sbjct: 343 ANERGLRFSGWLDDHIPPLLMADMLRVRQVMGNLLGNALKFTEQGSVSVDITWEPSDEQH 402 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + + + DTG+G++ +PF Q + R G+GLGL + ++ GK + Sbjct: 403 GVMNIDITDTGIGISPAAQATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGKIAL 462 Query: 795 FSTPAKGTLIEIIFPL 810 S KGT + I PL Sbjct: 463 ESQLGKGTSLLITLPL 478 >gi|317489211|ref|ZP_07947728.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA] gi|325832247|ref|ZP_08165246.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Eggerthella sp. HGA1] gi|316911612|gb|EFV33204.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA] gi|325486083|gb|EGC88537.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Eggerthella sp. HGA1] Length = 554 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 84/273 (30%), Positives = 134/273 (49%), Gaps = 11/273 (4%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y L + D + ++ L A IA + KS FLA +SH+IRTP+ AI+G +++ Sbjct: 146 YVLVLSDRTNEQKGSLMLEQALDIARSSNEAKSQFLANMSHDIRTPINAIVGMTKI---A 202 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS--EA 671 R + + + I S +L+++ND+LD+S+IESG+M L +D+ V EA Sbjct: 203 RESGEASEKIAGCLDAITASSRHLLELINDVLDMSRIESGQMELQERRFDIDDVVGGVEA 262 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII---- 727 I Q A + + I S + +LR + QI LN+ SNA+ +T GG I + Sbjct: 263 IIRPQAQAKSQELRIDCSKMKHKAFSGDELR-ISQILLNLASNAVKYTQEGGTIALVVQE 321 Query: 728 -STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + T S V + D G+GM+ +E+ PF + R +GTGLG+ + KA++D Sbjct: 322 LAKTRPSYASVAFTITDNGMGMSPEFVERIFDPFERSEEVSIARIQGTGLGMSITKALID 381 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 A G + S +G+ + L S C Sbjct: 382 AMGGIVEVDSEKGRGSSFRVTLELRVVSSADAC 414 >gi|265762536|ref|ZP_06091104.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263255144|gb|EEZ26490.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|301162051|emb|CBW21595.1| putative two-component sensor histidine kinase [Bacteroides fragilis 638R] Length = 633 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 127/247 (51%), Gaps = 13/247 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ ++ A+ AE+ + KS FLA +SHEIRTPL AI+GFS ++ + Sbjct: 391 KRAHQRMKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLSMVE----DKEEML 446 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EYA I+ + L+L ++ND+LD+SKIESG + H V ++ +SE + +L + Sbjct: 447 EYAGIIETNTELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRIRTDEV 506 Query: 685 LIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + SFA +P+ + D + Q+ N++ NAI FT S G+I I + V Sbjct: 507 SL--SFAERLPQCVFHTDKNRLIQVLTNLVVNAIKFT-SQGEIQIGYRLQDAHTLYFYVS 563 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG GM+ + E + F + Q GTGLGL + K +++ G+ + S KG+ Sbjct: 564 DTGCGMSAEQCEHVFERFVKYNTFIQ----GTGLGLSICKMIIEKLGGEIGVQSESGKGS 619 Query: 803 LIEIIFP 809 + P Sbjct: 620 VFWFTLP 626 >gi|228917226|ref|ZP_04080783.1| hypothetical protein bthur0012_44380 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228935895|ref|ZP_04098705.1| hypothetical protein bthur0009_43400 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948312|ref|ZP_04110595.1| hypothetical protein bthur0007_44380 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811299|gb|EEM57637.1| hypothetical protein bthur0007_44380 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823663|gb|EEM69485.1| hypothetical protein bthur0009_43400 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228842427|gb|EEM87518.1| hypothetical protein bthur0012_44380 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 571 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 100/376 (26%), Positives = 181/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ L + + Sbjct: 224 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEEYLDRLYY--------E 275 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 +H TEI+ L +E+I + K K + L + I++ F Sbjct: 276 SFHH--TEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 328 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 329 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 372 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L V + + + Sbjct: 373 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHM 431 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+GG + + Sbjct: 432 VLDNKAGEKEISLQVNTLKRVS-VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDK 490 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 491 YNAYI-KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 549 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 550 VDSEVGEGTTFTVVLP 565 >gi|254470617|ref|ZP_05084021.1| autoinducer 2 sensor kinase/phosphatase LuxQ, putative [Pseudovibrio sp. JE062] gi|211960928|gb|EEA96124.1| autoinducer 2 sensor kinase/phosphatase LuxQ, putative [Pseudovibrio sp. JE062] Length = 794 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 103/380 (27%), Positives = 181/380 (47%), Gaps = 31/380 (8%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 R++ E + +ILE+ SD I +++ G + N A +F L+ ++ + Sbjct: 159 RRITNEKNKYLTILESLSDPIVLMDENGKVNDLNYAAQAVFCG-----LQNTKIKYVNEA 213 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-----IIKKLPFSSCYSLTMH 559 T V+ + L L +L +TL + ++ +R +K P L ++ Sbjct: 214 TRDVLTNQLQPYLPQELESCFTDVTLDTAVGPRVFDIRAQHIVDFSRKFP---GMILILN 270 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+++ K+ K + AE +S KS FLA +SHEIRTPL ++G ++++K+ Sbjct: 271 DVTDHKKAKEE-------AEAANSAKSTFLASMSHEIRTPLNGVLGLADLLKDTGL---- 319 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P Y + I S ++ I+ND+LD SK+E+G + L + + + + + L + A Sbjct: 320 KPEQHRYLDGIISSSEMLRSILNDVLDYSKVEAGSLELETVDFKIRQVIKQVVDLTRQQA 379 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHTS 733 +K + + ++P IL AD ++Q+ LN +SNAI FT G I IS + Sbjct: 380 EDKGLELLIDVHPHVPEILRADPTKIRQVLLNFVSNAIKFTNEGSITISVHIPISQIRRA 439 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I+ V+DTGVG+ + +PF Q + GTGLGL ++K +V+A G+ Sbjct: 440 RCLQIM-VKDTGVGLPEGDHSYLFEPFVQQNAATNRLYGGTGLGLAISKRLVNAMGGEIG 498 Query: 794 IFSTPAKGTLIEIIFPLYDT 813 + +G + P Y+ Sbjct: 499 CKANQTQGAVFHFTVPFYEA 518 >gi|153947703|ref|YP_001401134.1| sensor histidine kinase/response regulator [Yersinia pseudotuberculosis IP 31758] gi|152959198|gb|ABS46659.1| sensor histidine kinase/response regulator [Yersinia pseudotuberculosis IP 31758] Length = 1286 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 137/256 (53%), Gaps = 11/256 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DIS+ K + +L A+ AE + KS FLA +SHE+RTP+ AI+G E+ I++ R Sbjct: 668 DISQRKTVERQLEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLELEIRSNR---- 723 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P + + +S ++ +++D++D +KIE+G++++H V + + +L Q Sbjct: 724 --PVEKDTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSIHPTAVDFHQEMERMFTLYQPI 781 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736 ANE+ + ++IP +L AD+ V+Q+ N+L NA+ FT G + T S+E+ Sbjct: 782 ANERGLRFSGWLDDHIPPLLMADMLRVRQVMGNLLGNALKFTEQGSVSVDITWEPSDEQH 841 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + + + DTG+G++ +PF Q + R G+GLGL + ++ GK + Sbjct: 842 GVMNIDITDTGIGISPAAQATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGKIAL 901 Query: 795 FSTPAKGTLIEIIFPL 810 S KGT + I PL Sbjct: 902 ESQLGKGTSLLITLPL 917 >gi|213023853|ref|ZP_03338300.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 294 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/218 (33%), Positives = 121/218 (55%), Gaps = 8/218 (3%) Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 LA +SHE+RTPL +IGF+ + NP ++ N I+RS N +L I+ND+LD S Sbjct: 1 LANMSHELRTPLNGVIGFTRLTLKTEL----NPTQRDHLNTIERSANNLLAIINDVLDFS 56 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQI 707 K+E+GK+ L P L + E ++L+ +++K + + + N++P ++ D ++Q+ Sbjct: 57 KLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPENVIGDPLRLQQV 116 Query: 708 ALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIP 764 N++ NAI FT SG I++ SN +V + V RDTG+G+ + + + F Q Sbjct: 117 ITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQAD 176 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 S R GTGLGL + + +V+ G S P +G+ Sbjct: 177 ASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGS 214 >gi|161520791|ref|YP_001584218.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans ATCC 17616] gi|189353027|ref|YP_001948654.1| signal transduction histidine kinase [Burkholderia multivorans ATCC 17616] gi|160344841|gb|ABX17926.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans ATCC 17616] gi|189337049|dbj|BAG46118.1| signal transduction histidine kinase [Burkholderia multivorans ATCC 17616] Length = 654 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 118/237 (49%), Gaps = 6/237 (2%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A+ A+ + K + LA VSHE+RTPL I G+ EV+++ G + + IDRS Sbjct: 267 ARAQADTSNRLKDELLATVSHELRTPLNVIYGWVEVLRSVD----GQGFAQQAVDAIDRS 322 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 + +V DLLD S + +GK+ L PV + V +A A+ K I + T A Sbjct: 323 ARSLARMVGDLLDASSLATGKLRLERTPVDVARVVHDAAREFGAPAHAKGITLVTEGAGT 382 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 I AD + Q+ N+LSNAI FTPSGG+I++S + V L V DTG GM L Sbjct: 383 ACVISADAERLHQVLSNLLSNAIKFTPSGGRIVVSLARV-DAHVRLSVADTGQGMAPEAL 441 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809 PF + N+ G GLGL + + + + + G S P +G + ++ P Sbjct: 442 PNLFDPFNRPANAPASPQRGLGLGLSIVRNIAELHGGSVEAASEGPGRGLTVTVMLP 498 >gi|29375769|ref|NP_814923.1| sensory box histidine kinase VicK [Enterococcus faecalis V583] gi|227552978|ref|ZP_03983027.1| histidine kinase [Enterococcus faecalis HH22] gi|257419020|ref|ZP_05596014.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus faecalis T11] gi|29343230|gb|AAO80993.1| sensory box histidine kinase VicK [Enterococcus faecalis V583] gi|227177887|gb|EEI58859.1| histidine kinase [Enterococcus faecalis HH22] gi|257160848|gb|EEU90808.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus faecalis T11] gi|315575747|gb|EFU87938.1| PAS domain S-box [Enterococcus faecalis TX0309B] gi|315579809|gb|EFU92000.1| PAS domain S-box [Enterococcus faecalis TX0309A] Length = 609 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 96/370 (25%), Positives = 175/370 (47%), Gaps = 31/370 (8%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 ME E +L S+L +DG+ +R G +++ N L E+++ L+ Sbjct: 254 MEAERNRLDSVLTHMTDGVIATDRRGKVITINEMALSLLNVKNENVIGTSLLELLDIEED 313 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYSLTMHDIS 562 + L E L + ++ S +EE + +R+ I ++ F + +HD++ Sbjct: 314 YTLRKLLEEPDELLIDRST------SDREEDQMIIRVDFTMIRRESGFITGLVCVLHDVT 367 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E QEKN E+E + +F++ VSHE+RTPLT++ + E + G NP Sbjct: 368 E--QEKN---------ERE---RREFVSNVSHELRTPLTSMRSYIEALSE---GAWENPE 410 Query: 623 YI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN- 680 + + ++ ++NDLL++S+++SG +L E V+ +E ++ + + Sbjct: 411 IAPNFLKVTLEETDRMIRMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIEN 470 Query: 681 -EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 +K I F + D V Q+ NIL+NAI ++P GG I T N V+ Sbjct: 471 EQKNYKICREFTKRDLWVELDTDKVIQVLDNILNNAIKYSPDGGVITCRLVETHNN-VVF 529 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 + D G+G+ +L K + F ++ ++ GTGLGL ++K ++ A+ G ++ ST Sbjct: 530 SISDQGLGIPKKDLGKVFERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEG 589 Query: 800 KGTLIEIIFP 809 +G+ I P Sbjct: 590 EGSTFYISLP 599 >gi|114570677|ref|YP_757357.1| multi-sensor hybrid histidine kinase [Maricaulis maris MCS10] gi|114341139|gb|ABI66419.1| multi-sensor hybrid histidine kinase [Maricaulis maris MCS10] Length = 815 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/257 (32%), Positives = 138/257 (53%), Gaps = 16/257 (6%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A+ A + KSDFLA +SHEIRTP+ I+G + V+ ++ N + + I Sbjct: 410 LIEARDRANAANRAKSDFLANMSHEIRTPMNGILGMARVLADKDLPDDVNSKL----DVI 465 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 RSG+ ++ +++D+LD+SKIE+G++ L P L+ S +L + A++K + + Sbjct: 466 VRSGDTLMHLLDDILDLSKIEAGQIELDEAPFDLEIIGSRVEALYRDTADKKGLTLEVEV 525 Query: 691 AN--NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDT 744 + + R LR + QIA N+++NAI FT SG ++ ++ T++ + + L V DT Sbjct: 526 TDRDGVSRHGDPLR-LSQIANNLVANAIKFTASG-KVRMTLGPTADGPDSDMIELVVSDT 583 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+GM+ + + + F Q +S R GTGLGL + K + D G + S P +GT Sbjct: 584 GIGMSEAQCQSIFEKFVQADSSTTRRFGGTGLGLAICKGLADQMGGTIDVASNPGQGTTF 643 Query: 805 EIIFPL----YDTSHPH 817 + PL DT+ P Sbjct: 644 TVRLPLAPVIADTASPR 660 >gi|322417759|ref|YP_004196982.1| histidine kinase [Geobacter sp. M18] gi|320124146|gb|ADW11706.1| histidine kinase [Geobacter sp. M18] Length = 584 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 121/229 (52%), Gaps = 8/229 (3%) Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 S FLA +SHEIRTP+ ++G +E++ + + + YA + RSG +L I++D+L Sbjct: 198 SQFLANMSHEIRTPMNGVLGMAELLLHTEL----DGKQRSYAEMLHRSGESLLGIISDIL 253 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSV 704 +ISKIE+GK+ + L EA A+ L + K + I A ++PR + D + Sbjct: 254 NISKIEAGKLEIERIGFDLHEATRSAVELYREVGRRKGVAIELQIAPDVPRHAVGDPNRL 313 Query: 705 KQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 +Q+ +NI++N + FT G ++ + + V ++DTG+G+ + + F Sbjct: 314 RQVLINIINNGLKFTEKGSVRIRVTLVEKSGNGHYVGFEIKDTGIGIPGEAIGAIFELFA 373 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 Q+ S + GTGLGL +AK +V+ G+ + S P +G+ I L Sbjct: 374 QVDGSTTRKYGGTGLGLAIAKQLVELMGGEIEVESEPGQGSTFTFIVYL 422 >gi|241206973|ref|YP_002978069.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860863|gb|ACS58530.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 861 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 108/396 (27%), Positives = 190/396 (47%), Gaps = 27/396 (6%) Query: 430 QNGIEPEDVDTRINKR-KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 +N E D++TR N K++ E ++ S+G+A+ +G I +N A L+G Sbjct: 478 ENLTEQVDLETRYNTLVKVQGET------IDHLSEGVAVFGPDGRIRLSNPAFRALWG-- 529 Query: 489 VEDILRKPFT---VFLEQNTPSV-----MNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 + + KP T E PS + I S D + + TL E Sbjct: 530 ITETEAKPGTHIRALGEACAPSYDQPDGWKTFAELITSFDDERRSGQGTL-----ELFSG 584 Query: 541 LRIIIKKLPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 L + +P + + LT ++++ + + L+ + K K+DF+ VS+E+R+P Sbjct: 585 LVLDYAVIPLPNAQTMLTFVNMTDSVRAERALTEKNEALRKADELKNDFVQHVSYELRSP 644 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 LT IIGF+++++ GPL R EY ++I S +++L +VND+LD++ +++G M L++ Sbjct: 645 LTNIIGFTDLLRTPGVGPL-TERQAEYIDHISTSSSVLLTLVNDILDLATVDAGIMRLNY 703 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 + L++ + + + +E + + + + I+AD + +KQI L +LSNA +F+ Sbjct: 704 ADIDLNDLLDDVSMQIADRLHESGVALEITAPAYLGSIVADPQRLKQILLKLLSNAANFS 763 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 P G I + H + + V D G G++ + F S + RG G GLGL Sbjct: 764 PEGTSISLE-CHREGTDFVFSVGDRGPGISPDMIATVFDRFATGAKSGK-RG-GAGLGLS 820 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 + + V + G I S P KGT + P D H Sbjct: 821 IVDSFVSLHHGDVTIDSEPGKGTTVVCRIPSVDVPH 856 >gi|59713255|ref|YP_206030.1| hybrid two component sensor histidine kinase [Vibrio fischeri ES114] gi|59481503|gb|AAW87142.1| hybrid two component sensor histidine kinase [Vibrio fischeri ES114] Length = 575 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 135/246 (54%), Gaps = 13/246 (5%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +K KK AE DF+A ++HE+RTPL ++G +E++++ + +E Sbjct: 197 DKTLKEKKRAESSERATRDFVAMINHELRTPLNGLLGSAELMEDTEITDY-QKKLLET-- 253 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQLYANEKRIL 685 I +SG ++ I+NDLLD SK+ +G + L +F+P L + + E I Q+ EK + Sbjct: 254 -IHQSGQMLRIIINDLLDFSKMSAGMLELKMANFKPCILVKTI-EQIFTPQMA--EKCLR 309 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 A+N+P+ ++ D+ V+QI +N++ NA FT SG I + N ++L V DT Sbjct: 310 FDIHIADNLPQTLMGDIDRVQQILVNLIGNAFKFTKSG-HISLKVGWQKNA-LVLIVSDT 367 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G G+ + + +PF Q+ NS Q + EGTGLGL + K +VDA G+ S +G+ Sbjct: 368 GCGIPQDKQKLLFEPFTQVDNSSQRQFEGTGLGLSICKLLVDAMSGELSFKSELGEGSEF 427 Query: 805 EIIFPL 810 ++ PL Sbjct: 428 QVKLPL 433 >gi|238794991|ref|ZP_04638587.1| Sensor kinase protein rcsC [Yersinia intermedia ATCC 29909] gi|238725694|gb|EEQ17252.1| Sensor kinase protein rcsC [Yersinia intermedia ATCC 29909] Length = 932 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 84/256 (32%), Positives = 133/256 (51%), Gaps = 7/256 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 421 VLVDVSSRVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 479 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 480 PHGVDRLVTAMN---NSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYL 536 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +KR+ + ++PR +L D ++Q+ N+L+NAI FT +G II + Sbjct: 537 PLVVKKRLGLYCFIEPDVPRQMLGDSVRLQQVISNLLNNAIKFTDTG--CIILQVRVRGD 594 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + RVRDTGVG+ + E+ + PF Q+ Q +GTGLGL + + +V+ G + Sbjct: 595 YLEFRVRDTGVGINSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVV 654 Query: 796 STPAKGTLIEIIFPLY 811 S G++ I PLY Sbjct: 655 SELGMGSIFAIRIPLY 670 >gi|330447454|ref|ZP_08311103.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491645|dbj|GAA05600.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 1114 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/285 (28%), Positives = 148/285 (51%), Gaps = 15/285 (5%) Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 L++I G+ + +++ L I FS I K + ++L + KI ++++ Sbjct: 381 LDQIIEGTERSDEIGRLAI-----SFSRMQRSIREKIGLIKTQNDELEQSLKIIQQKNDE 435 Query: 585 -------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 K +FLA SHE+RTPL ++G +E + GPL +P+ + I+ SG + Sbjct: 436 LQTADKLKDEFLATTSHELRTPLHGMVGIAESLLAGANGPLQDPQRRQLEMLIN-SGQRL 494 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 ++V+DLLD K+ G +++H + L AV + L K + I ++P + Sbjct: 495 TNLVDDLLDYHKMRYGDLDIHRHAIDLSAAVRLVLELSSHLLGNKPVRIINQIPADLPLV 554 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 AD + ++Q+ N++ NAI +T S G+IIIS T +++ ++V DTG G+ + +LE Sbjct: 555 DADEQRLEQVLYNLVGNAIKYT-SEGKIIISAT-VLEQQLRVQVVDTGQGIPSEQLEHIF 612 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +P Q + +G GLGL +++ +++ G+ Y+ S P GT Sbjct: 613 EPLIQANSGSANYRQGAGLGLSISRQLIELMGGRLYVSSQPMVGT 657 >gi|304408550|ref|ZP_07390171.1| integral membrane sensor hybrid histidine kinase [Shewanella baltica OS183] gi|307305378|ref|ZP_07585126.1| integral membrane sensor hybrid histidine kinase [Shewanella baltica BA175] gi|304352371|gb|EFM16768.1| integral membrane sensor hybrid histidine kinase [Shewanella baltica OS183] gi|306911681|gb|EFN42106.1| integral membrane sensor hybrid histidine kinase [Shewanella baltica BA175] Length = 924 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 133/249 (53%), Gaps = 11/249 (4%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++L+ AK+ AEK + K++ L +SHEIRTPL I G E+++N + P+ ++ + Sbjct: 385 HELALAKQEAEKANERKTEHLTNISHEIRTPLNGITGALELLRNTQL----TPKQMDLRD 440 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 N +L I+N+LLD S+IE+ ++ L+ + + + +A+ +Q K I ++ Sbjct: 441 TAYNCANSLLAIINNLLDFSRIEADQIELNLQSYPILKLADDAMITIQSRVVNKPITLKC 500 Query: 689 SF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 AN + L D V+QI +N+L N+ FT GQI++ + + V DTGVG Sbjct: 501 LVNANVAEKALLDPLRVRQILVNLLGNSAKFT-EAGQILLR-IEVVKQHLYFSVEDTGVG 558 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + ++ +PF Q + + GTGLGLP++ + G+ +FST +G+ + Sbjct: 559 VAIQDQQRIFEPFAQTCHHK----SGTGLGLPISAKLASKMQGQLTMFSTLGEGSTFILD 614 Query: 808 FPLYDTSHP 816 PL D + P Sbjct: 615 LPLIDPTAP 623 >gi|51891887|ref|YP_074578.1| two-component sensor kinase [Symbiobacterium thermophilum IAM 14863] gi|51855576|dbj|BAD39734.1| two-component sensor kinase, probably involved in phosphate sensing [Symbiobacterium thermophilum IAM 14863] Length = 444 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 92/365 (25%), Positives = 173/365 (47%), Gaps = 24/365 (6%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 ++ E Q+ IL+ +DGI +++ I+ N A ++ G + L + LE Sbjct: 97 RLLAEKAQMDLILQHMADGILLLDERRRIVLVNPAAERMLGVSRHEALGRDH---LEVTH 153 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 ++ L +L+ + LE + +E++L R+ + + + DI+ + Sbjct: 154 HFELDERLARVLATGRPEALE--IRRAHPQEQILEARLALAPSGGERGVLVMLRDITRSR 211 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q + +++F+A V+HE+RTPLT+I GF+E + G L P Sbjct: 212 QLEQM--------------RTEFVANVTHELRTPLTSIQGFAETLLE---GALDEPETAR 254 Query: 626 -YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + + R + ++++LLD+S++ESGK + P E ++ + A + Sbjct: 255 HFVEIMLRESRHLGALIDELLDLSRVESGKFRMQRRPTVPAELIAATAARFAQKAERAGV 314 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + T + +P I D + Q+ N++ NAI +TP+GG+I +S + V + V DT Sbjct: 315 QLVTEAPDGLPLINGDPDRLVQVLSNLVENAIKYTPAGGRITLS-ARRDGDGVRIAVADT 373 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G G+ +L + + F ++ ++ GTGLGL +AK +V+A+ G + S KG+ Sbjct: 374 GAGIPQADLGRIFERFYRVDKARSRATGGTGLGLAIAKHIVEAHGGTIGVESEVGKGSTF 433 Query: 805 EIIFP 809 +I P Sbjct: 434 TVILP 438 >gi|332526001|ref|ZP_08402141.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332109846|gb|EGJ10474.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 972 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 14/256 (5%) Query: 557 TMHDISEWKQEKNKLSHAKKI-------AEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 + D+ KQ + +L+ A AE + KS FLA +SHEIRTP+ AIIG + + Sbjct: 431 VLTDVGALKQAEQRLAEANGQLEQRAVQAEAATRAKSAFLANMSHEIRTPMNAIIGLTHL 490 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 I PL R +D + +L I+ND+LD+SKIE+GK+ L S DE ++ Sbjct: 491 ISRATQDPLQRERL----RKVDGAAAHLLQILNDILDLSKIEAGKLRLDPVDFSRDELIA 546 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG---QII 726 A+ +V+ A K + + + R+ D R + Q +N+L NA+ FT G + Sbjct: 547 RALDVVEASARAKGLELVLDTDHLPARLRGDARLLSQALINLLGNAVKFTEHGWVRLRAA 606 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + H +V V+DTG+G+ + + F Q +S R GTGLGL L + + + Sbjct: 607 LLREHGQRLQVRFEVQDTGIGIAPEQQARLFTAFEQADSSSTRRHGGTGLGLALTRHIAE 666 Query: 787 ANMGKFYIFSTPAKGT 802 G S P G+ Sbjct: 667 LMGGSADAVSRPGAGS 682 >gi|225018277|ref|ZP_03707469.1| hypothetical protein CLOSTMETH_02215 [Clostridium methylpentosum DSM 5476] gi|224948974|gb|EEG30183.1| hypothetical protein CLOSTMETH_02215 [Clostridium methylpentosum DSM 5476] Length = 1192 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 123/230 (53%), Gaps = 18/230 (7%) Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA-NYIDRSGNLVLDIV 641 + KSDFL+R+SHEIRTP+ AIIG S + +G+ +E + I S +L ++ Sbjct: 676 AAKSDFLSRMSHEIRTPMNAIIGMSTIAAQ----SIGDDEQVEDCISKIGISSRFLLSLI 731 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL--- 698 ND+LD+S+IESGK+ L + + ++E +S S+ A K + + + +L Sbjct: 732 NDILDMSRIESGKLLLKSDKIPIEEFLSGISSICYAQAAAKGV----EYECIVDPVLDDY 787 Query: 699 --ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNE-EVILRVRDTGVGMTNYE 752 D ++QI +NILSNAI FT GG++ S + T N+ E+ + DTGVGM+ Sbjct: 788 YIGDTMKLQQILINILSNAIKFTGEGGKVTFSASQRRKTKNDAELRFIINDTGVGMSEEF 847 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 L +PF Q GTGLGL ++K +VD GK + S GT Sbjct: 848 LPHIFEPFSQESTGTTALYGGTGLGLAISKNIVDLMDGKITVRSIKGIGT 897 >gi|147676477|ref|YP_001210692.1| hypothetical protein PTH_0142 [Pelotomaculum thermopropionicum SI] gi|146272574|dbj|BAF58323.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 2071 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 85/246 (34%), Positives = 131/246 (53%), Gaps = 17/246 (6%) Query: 566 QEKNKL-SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 QE N+L AK+ A+ + K FLA +SHEIRT L +IG +E++ + PL N Sbjct: 1534 QETNELLKQAKEAADAANRAKGKFLAVMSHEIRTTLNGLIGMAELLLDT---PL-NGEQQ 1589 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANE 681 EY + + + +L +VNDLLD S+IE G++ L F P SL V ++++LV+ A + Sbjct: 1590 EYVSAVRECADSLLSVVNDLLDFSRIEEGRLVLETVSFNPASL---VEKSVALVEPGARQ 1646 Query: 682 KRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----E 736 K +L++ A ++P L D ++Q+ LN+L NA+ FT G+I +S E Sbjct: 1647 KSLLLKYHIAPDVPGTLQGDPIRLRQVLLNLLGNAVKFTER-GEISLSAFVEGREPDSLT 1705 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V V+DTG+G+ +PF Q S R G GLGL + K +V+ G+ S Sbjct: 1706 VRFEVQDTGIGIPEEARSMLFRPFTQAGPSSAGRYGGAGLGLSICKRLVELMGGRIGFES 1765 Query: 797 TPAKGT 802 +G+ Sbjct: 1766 EEGRGS 1771 >gi|255008850|ref|ZP_05280976.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313146595|ref|ZP_07808788.1| two-component system sensor histidine kinase/response regulator [Bacteroides fragilis 3_1_12] gi|313135362|gb|EFR52722.1| two-component system sensor histidine kinase/response regulator [Bacteroides fragilis 3_1_12] Length = 895 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 88/287 (30%), Positives = 140/287 (48%), Gaps = 16/287 (5%) Query: 528 ITLGSTKEEKLLSL---RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 I G K LL L +II++ FS DI++ + + +L +K+ AE Sbjct: 452 IMEGKDKNGNLLILDKQKIIVESEDFSPIIVSIEWDITQLELMRRELMESKEKAETSDKL 511 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP-RYIEYANYIDRSGNLVLDIVND 643 KS FLA +SHEIRTPL AI+GFS +I NP EY +D + +L ++N+ Sbjct: 512 KSAFLANMSHEIRTPLNAIVGFSRIISESE-----NPEERKEYYEIVDANNERLLQLINE 566 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 +LD+SKIESG + + PV L E I ++ + + ++ + I +D Sbjct: 567 ILDLSKIESGIVEFTYGPVKLHTLCKE-IHDAHVFRCPQGVELKFDSPDEALSIHSDKNR 625 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 + Q+ N++ NA FT G + E+V+ V+DTG+G+ +L + + F ++ Sbjct: 626 IFQVFSNLIGNAFKFTTQGS--VSYGYRQEAEKVVFYVKDTGLGIEPEKLGRVFQRFAKL 683 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 N Q GTGLGL + K +++ G+ + S GT PL Sbjct: 684 NNFAQ----GTGLGLSICKTIIERLGGEISVSSEVGTGTTFTFWLPL 726 >gi|225028824|ref|ZP_03718016.1| hypothetical protein EUBHAL_03110 [Eubacterium hallii DSM 3353] gi|224953845|gb|EEG35054.1| hypothetical protein EUBHAL_03110 [Eubacterium hallii DSM 3353] Length = 639 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 134/252 (53%), Gaps = 7/252 (2%) Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 +K+++ L A++ A + + KS FLA +SHEIRTP+ ++G +E+I + + Sbjct: 186 YKKQQVFLMQAREEAMEANRAKSTFLANMSHEIRTPINVMLGMNEMILRES----ESREV 241 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 ++YA ++++GN +L ++N++LDI++IES K+++ E SL + V E + A K Sbjct: 242 VQYAKSVEKAGNYLLSLINNILDITRIESKKLDIIEEKFSLRQLVQEVCLIGAKQAEAKN 301 Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + +P+ L D +KQ+ LN+++NA+ +T G + +++ V+ Sbjct: 302 LEFVVDVEETLPKYLEGDALHIKQVILNLINNAVKYTKKGK--VFLKVCQEEKQISFSVK 359 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ ++E F + + EG+GLGL +AK + + G S KG+ Sbjct: 360 DTGIGIKKEDMEALFDMFMRADIKRHRNIEGSGLGLTIAKELCEQMGGHIQAESIYGKGS 419 Query: 803 LIEIIFPLYDTS 814 + FPL D Sbjct: 420 NFTVYFPLKDAG 431 >gi|171058133|ref|YP_001790482.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170775578|gb|ACB33717.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 945 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 106/395 (26%), Positives = 188/395 (47%), Gaps = 30/395 (7%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILS-TNRAVSKLFGYPVEDILRKPFTVFLEQN 504 K+ ++L + L+A D + I+R+G I + A +L+ P + K F + + Sbjct: 407 KLRDTTIRLEATLDALPDLMFRIDRDGRIEEFRSSATDQLYASP-SAFMGKTFREVVPEP 465 Query: 505 TPSVMNHYLTEIL-SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 V++ L + S R I +G+ + +S+ + + + L + DI+E Sbjct: 466 AARVLDEALEDAARSGSSRGATYAIDIGAEQRWFEVSMSAMAGADDRPAHFILLLRDITE 525 Query: 564 WKQEKN------------------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 K+ + +L+ A + AE + KS FLA +SHEIRTPL AI+G Sbjct: 526 RKRAEQTLDDYRQGLEAMVGERTAQLNEATRRAEAANVAKSAFLANMSHEIRTPLNAIVG 585 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 S +I R L P E + + + +L+I+N +LD+SKI++GK L P+ ++ Sbjct: 586 MSHLI---RLAGL-PPAQTERLDKLKAAATHLLEILNAILDLSKIDAGKFTLEEIPLRVE 641 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724 ++ +S++ A K + + TS + +PR ++ D ++Q LN +NAI FT +G Sbjct: 642 SIIANTLSMLDDRARAKSLRL-TSEVDRMPRSLVGDPTRLQQALLNYANNAIKFTDAGSV 700 Query: 725 IIIST-THTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 + + E+V++R V DTG+G+ + + F Q ++ R GTGLGL + Sbjct: 701 TVRARLVEQHAEDVLVRFEVEDTGIGIDDAAIGNLFSAFQQADSATTRRSGGTGLGLAIT 760 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 K + + G + STP G++ + L P Sbjct: 761 KKLAELMKGNAGVTSTPGAGSVFWFMARLRKAQEP 795 >gi|148975516|ref|ZP_01812387.1| putative sensor histidine kinase [Vibrionales bacterium SWAT-3] gi|145964944|gb|EDK30195.1| putative sensor histidine kinase [Vibrionales bacterium SWAT-3] Length = 684 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/275 (31%), Positives = 138/275 (50%), Gaps = 8/275 (2%) Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 ++L + + L F+ L +H + E K+ A A+K S KS FLA +SHE+RT Sbjct: 118 VNLIVALALLTFAFSLILFIHRLFELKRNNLSYQEAADKAQKASEAKSLFLATMSHELRT 177 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 P+ ++G +++IK + R + A I SG ++ I+ND+LD SK+E GKM L Sbjct: 178 PMNGVLGIAQIIKEDSQS--ADTR--KQAQIIIDSGQHLVTILNDILDFSKVEQGKMELE 233 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRI--LIRTSFANNIPRILADLRSVKQIALNILSNAI 716 P S+ + V+ + A +K I +I+ + NI +++ D +QI N+ NA+ Sbjct: 234 LSPFSVTDVVTHLDKTLTPLATDKGISFVIKDNIPTNI-QLVGDSARTRQILFNLAGNAV 292 Query: 717 HFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 FT SG ++ T+ V + V DTG+G+ +++ F Q S + GTG Sbjct: 293 KFTESGKVEVEFEIAPTTPPSVNIMVSDTGIGIAEDKVDHIFTAFEQAELSTTRKFGGTG 352 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 LGL + K +V+ G + S GT I PL Sbjct: 353 LGLSIVKQLVELMGGTIDVSSQLNMGTCFTISLPL 387 >gi|90422175|ref|YP_530545.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] gi|90104189|gb|ABD86226.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] Length = 934 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/242 (30%), Positives = 124/242 (51%), Gaps = 6/242 (2%) Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 K +EK KS FLA +SHEIRTPL I+G +++ R + + +D+SG Sbjct: 414 KHSEKLGRTKSQFLANMSHEIRTPLHGILGTVQLLAQSRV----SDEQRSWVQALDQSGR 469 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 L+ DI++D+LD +++ESG++ + SL E ++ + ++ K + +P Sbjct: 470 LLRDILDDILDFTRLESGRIRVDTAMFSLTERIAMVNATIRASMERKGLDFTVEIDPELP 529 Query: 696 RIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 +L D + QI LN+L NA FT GG ++ ++ + + + V DTG+G+ L Sbjct: 530 EVLCGDAGKLGQILLNLLGNAAKFTKQGGVRLTVAGDAGRPDRLRITVADTGIGIAPEAL 589 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 +PF Q S R G+GLGL + + ++DA G + + +GT ++FP+ Sbjct: 590 AHIFEPFSQADGSVARRFGGSGLGLAVCRGLLDALGGDIDLQTEVGRGTSFTVLFPVSRG 649 Query: 814 SH 815 H Sbjct: 650 DH 651 >gi|67586106|ref|XP_665166.1| sensor histidine kinase [Cryptosporidium hominis TU502] gi|54655661|gb|EAL34936.1| sensor histidine kinase [Cryptosporidium hominis] Length = 548 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 76/252 (30%), Positives = 127/252 (50%), Gaps = 1/252 (0%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + + DIS ++ L A+ E K FLA VSHE+RTPL +IIGFS+V+ + Sbjct: 234 FVIVATDISGVVADRFALDAARTQVETAEVTKGRFLASVSHELRTPLNSIIGFSDVLLQE 293 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 +++ + KIE+G + EP + +AV+ Sbjct: 294 IVASCPMRASANMSSWCISPARTCSPLSMPSSTYXKIEAGTYPIMAEPFAFKDAVTMVHD 353 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A++K + + + NI ++AD R+++Q+ +N++SNA+ FT SGG + I Sbjct: 354 MMAHQASQKNVTLCDRVSRNIGIVVADQRAIQQVLINLVSNAVKFTESGGVVTID-AGLH 412 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + + V DTG+G+ +L +PF Q+ N R EGTGLGL K ++ + G+ Sbjct: 413 GDMLAFSVSDTGIGIAEADLLTLGQPFRQVQNDYTRRHEGTGLGLATVKGLIGLHGGQMD 472 Query: 794 IFSTPAKGTLIE 805 I S P++GT+ E Sbjct: 473 IRSRPSEGTVGE 484 >gi|330828900|ref|YP_004391852.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas veronii B565] gi|328804036|gb|AEB49235.1| Two-component system hybrid sensor histidine kinase/response regulator [Aeromonas veronii B565] Length = 698 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/260 (31%), Positives = 139/260 (53%), Gaps = 13/260 (5%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y T DIS + + +L+ A+ AE + KS FLA ++HEIR+P+ A++G +++++ Sbjct: 303 YRGTARDISNQIRREEELARARDEAEAANRAKSQFLAMMTHEIRSPMNAVLGMLDLVQHA 362 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE---PVSLDEAVSE 670 P + +A + S L+ I++D+LD SKIES + H E PV L +++ E Sbjct: 363 ELAP-EQQSLLRHATH---SARLLQTIIDDVLDFSKIESQTLVFHCETLQPVQLCQSLVE 418 Query: 671 AISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 + Q A K I + ++PR L D + Q+ N+L NA+ FT G Q+ + Sbjct: 419 PL---QARATAKGIALVYRVDESVPRELQGDPMRLSQVMGNLLDNALKFTEQG-QVTLHL 474 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 +E++++ V DTG+G+ + + +PF Q+ NS R GTGLGL ++K +V Sbjct: 475 GW-QDEKLLISVSDTGIGIADADQALLFEPFSQVDNSATRRFSGTGLGLAISKRLVTLMG 533 Query: 790 GKFYIFSTPAKGTLIEIIFP 809 G+ ++ S P KG+ P Sbjct: 534 GEIHLKSEPGKGSCFWFELP 553 >gi|229032232|ref|ZP_04188205.1| hypothetical protein bcere0028_42740 [Bacillus cereus AH1271] gi|228729012|gb|EEL80015.1| hypothetical protein bcere0028_42740 [Bacillus cereus AH1271] Length = 558 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 99/376 (26%), Positives = 180/376 (47%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ L + + Sbjct: 211 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEEYLDRLY---------- 260 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 + + TEI+ L +E+I + K K + L + I++ F Sbjct: 261 YESFHHTEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 315 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 316 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 359 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L V + + + Sbjct: 360 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHM 418 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ EK I ++ + + ++ D +KQI +N+++NAI +TP+GG + + Sbjct: 419 VLDNKTGEKEISLQVNALKGVS-VIGDPSRLKQIFINLINNAIVYTPAGGVVSVELAEDK 477 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 478 YNAYI-KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 536 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 537 VDSEVGEGTTFTVVLP 552 >gi|255034925|ref|YP_003085546.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254947681|gb|ACT92381.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 647 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 103/345 (29%), Positives = 168/345 (48%), Gaps = 30/345 (8%) Query: 455 CSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 +I+ + D IA + + G ILS N +V + G + +++ L +N L Sbjct: 142 ATIVLNSPDIIATVEPDTGSILSINPSVEAILGISPQSLIKTSVLDLL----VDPLNSAL 197 Query: 514 TEILSLDLRQTLEKITL-----GSTKEEKLLSLRIIIK-KLPFSSCYSLTMHDISEWKQE 567 E+L E I + G ++ L LRI+ K +L F + +HD+ + K Sbjct: 198 REVLVKRSFVGGETIVVEDQFYGRLRQPVWLELRIMYKNRLLF-----VNLHDVEKRKAH 252 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + L A+ AEK K FLA +SHEIRTPL IIG ++ + E Sbjct: 253 ELALIDAQAQAEKARKTKESFLANMSHEIRTPLNGIIGLGNLLAATEL----SEAQAELV 308 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV--SEAISLVQLYANEKRIL 685 + + +S +L+I+ND+LDISKI+ GK ++ P S D V + I L+Q A+EK++ Sbjct: 309 DMLRQSSGSLLNILNDILDISKIDEGKFSII--PTSTDLRVLGKQIIDLMQFKADEKKLE 366 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILR 740 +R +IP + D + QI LN++ NA+ FT + G + + H + + Sbjct: 367 LRLEIGKDIPDCVTVDGMRLNQILLNLVGNALKFTGT-GNVTLKMEHLAQTAAGHTIRFA 425 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 V DTG+GM++ L +GQ + + GTGLGL +++ +V Sbjct: 426 VEDTGIGMSDDHLANIFSEYGQASENISHQYGGTGLGLTISQKLV 470 >gi|153872721|ref|ZP_02001529.1| Response regulator receiver protein [Beggiatoa sp. PS] gi|152070813|gb|EDN68471.1| Response regulator receiver protein [Beggiatoa sp. PS] Length = 677 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 132/251 (52%), Gaps = 23/251 (9%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E S +KS+FLA +SHE+RTPL +++ S+++ N + G L + + +EYA I +G+ +L Sbjct: 143 ELASRYKSEFLANMSHELRTPLNSLLILSQLLTNNKQGNLTD-KQLEYAQTIHSAGSDLL 201 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++ND+LD+SK+E+GK+ +H E +SL + + A K + + AN++P L Sbjct: 202 KLINDILDLSKVEAGKIEIHLEEISLTDFIEIIKQKFCHVAENKELAFDITVANDVPATL 261 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGG-------------QIIISTTHTSNEE----VILR 740 D + + QI N+LSNA FT GG Q +ST+ ++ + + Sbjct: 262 NTDEQRLNQIINNLLSNAFKFTHQGGIEIIVQSITEKSLQAPVSTSLITDLQKGALIAFS 321 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+G+ + + + F Q + R GTGLGL +++ + G + S K Sbjct: 322 VSDTGIGIPKDKQQVIFEAFQQADGTTSRRYGGTGLGLSISRQLARLLGGDLQLHSEEGK 381 Query: 801 GTLIEIIFPLY 811 G+ F LY Sbjct: 382 GS----TFTLY 388 >gi|6687470|emb|CAB64973.1| VicK protein [Enterococcus faecalis] Length = 611 Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 96/370 (25%), Positives = 175/370 (47%), Gaps = 31/370 (8%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 ME E +L S+L +DG+ +R G +++ N L E+++ L+ Sbjct: 256 MEAERNRLDSVLTHMTDGVIATDRRGKVITINEMALSLLNVKNENVIGTSLLELLDIEED 315 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYSLTMHDIS 562 + L E L + ++ S +EE + +R+ I ++ F + +HD++ Sbjct: 316 YTLRKLLEEPDELLIDRST------SDREEDQMIIRVDFTMIRRESGFITGLVCVLHDVT 369 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E QEKN E+E + +F++ VSHE+RTPLT++ + E + G NP Sbjct: 370 E--QEKN---------ERE---RREFVSNVSHELRTPLTSMRSYIEALSE---GAWENPE 412 Query: 623 YI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN- 680 + + ++ ++NDLL++S+++SG +L E V+ +E ++ + + Sbjct: 413 IAPNFLKVTLEETDRMIRMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIEN 472 Query: 681 -EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 +K I F + D V Q+ NIL+NAI ++P GG I T N V+ Sbjct: 473 EQKNYKICREFTKRDLWVELDTDKVIQVLDNILNNAIKYSPDGGVITCRLVETHNN-VVF 531 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 + D G+G+ +L K + F ++ ++ GTGLGL ++K ++ A+ G ++ ST Sbjct: 532 SISDQGLGIPKKDLGKVFERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEG 591 Query: 800 KGTLIEIIFP 809 +G+ I P Sbjct: 592 EGSTFYISLP 601 >gi|332525160|ref|ZP_08401337.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332108446|gb|EGJ09670.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 751 Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 129/249 (51%), Gaps = 6/249 (2%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + + +L+ ++IA + S+ KS FLA VSHEIRTPL A++G ++++ PL + + Sbjct: 353 EQAECERRLALEREIAARSSATKSAFLATVSHEIRTPLNAVLGVADLMTAT---PLSDEQ 409 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + + +G + +++DLLD+ KIE+G++ L EP L ++ +L+Q A K Sbjct: 410 R-RHVDVFRHAGQTLAALIDDLLDLGKIEAGRLELVVEPFVLRASLDSVAALLQPRAAAK 468 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + ++P + D R V+Q N+L NAI FT + G++ + ++ V V Sbjct: 469 GLRFVLDVDEDLPAWVSGDRRRVEQALTNLLGNAIKFT-ARGEVSLQAARSAAGGVRFTV 527 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RDTG+G+ + +PF Q + GTGLGL + +A G + S P G Sbjct: 528 RDTGIGIAPAQQALVFEPFVQADDRITRDYGGTGLGLAITRATAQQMGGDLRLESRPGVG 587 Query: 802 TLIEIIFPL 810 + + PL Sbjct: 588 STFTLELPL 596 >gi|302342723|ref|YP_003807252.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] gi|301639336|gb|ADK84658.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] Length = 1336 Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 90/343 (26%), Positives = 164/343 (47%), Gaps = 17/343 (4%) Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVF----LEQNTPSVMNHYLTEILSLDLRQT 524 + +G+++S N+A++ G P + I+ F L QN + YL ++ + Sbjct: 587 DEDGVLISANKALAAAVGRPRQRIIGHSIAEFTAERLRQNFHDI---YLRQLRETGQHEG 643 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 L +T + + + + Y + HD++E + +L AK+ AE S Sbjct: 644 LFVLTSQDGQARHVEYYTSMGRDRSGGIIYRGSAHDVTERRHLTRQLQRAKEEAEAASRA 703 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KSDFLA +SHEIRTP+ AIIG + + E+ + + ++ ++ D+ Sbjct: 704 KSDFLANMSHEIRTPMNAIIGMTNLTLMTSL----TREQTEFLGTVKSAAESLMQLLGDI 759 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703 LD+SKIE+ ++ L L + + + + + A+ K + + A P R+ D Sbjct: 760 LDLSKIEARQLALENVEFDLADLLEATLRDLAVRAHGKGLELIGRMAPGAPGRLRGDPLR 819 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR----DTGVGMTNYELEKAMKP 759 ++QI +N++ NAI FT GQ+++ + + L +R DTGVG+ + + Sbjct: 820 LRQILVNLVGNAIKFTDH-GQVLVEARLEAMADNKLEMRFSVVDTGVGIEPENIGRVFDR 878 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 F Q +S R GTGLG ++K + + G+ ++ STP +G+ Sbjct: 879 FTQADSSSTRRFGGTGLGAAISKELCELMGGRIWVESTPGRGS 921 >gi|255691726|ref|ZP_05415401.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260622611|gb|EEX45482.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1476 Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/248 (29%), Positives = 128/248 (51%), Gaps = 7/248 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG-FSEVIKNQRFGPLGNPRYIEYAN 628 K+ + I +K S K F +SHE+RTPLT I G E+ + ++ P G ++Y + Sbjct: 930 KMKNDIYIEQKVSEMKIKFFTNISHELRTPLTLIKGPIQELKEREKLSPKG----LQYVD 985 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 ++++ N +L +VN +LD KI++GKM LH + +E ++ ++ + E + Sbjct: 986 LMEKNTNQMLQLVNQILDFRKIQNGKMRLHVSLIDFNEMIASFQKEFRVLSEENEVSFTF 1045 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVG 747 + + AD + + NI+SNA FT SGG I ++T T + + +RV D G G Sbjct: 1046 QLPDESIMVWADKEKLSIVIRNIISNAFKFTHSGGSIYVTTGLTDDGKRCFVRVEDNGEG 1105 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +L + + F Q N++ +GTG+GL L+K +V+ + G Y S +G + + Sbjct: 1106 IPQSKLTEIFERFSQGENTKNPYYQGTGIGLALSKEIVNLHHGSIYAESPEGQGAVFTVE 1165 Query: 808 FPLYDTSH 815 L D H Sbjct: 1166 L-LMDKEH 1172 >gi|75907228|ref|YP_321524.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75700953|gb|ABA20629.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] Length = 646 Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 84/260 (32%), Positives = 141/260 (54%), Gaps = 14/260 (5%) Query: 560 DISEWK---QEKNKLSHAKKIAEKESSH----KSDFLARVSHEIRTPLTAIIGFSEVIKN 612 DIS+ K E+++L +K+A E+ K +F+A VSH++R+PL AI+G+S++++ Sbjct: 392 DISDRKLAEAERDQLLQLEKLARAEAEAANQTKDEFVAMVSHDLRSPLNAILGWSQLLRT 451 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 ++ R +E I+R+ ++ DLLD+S+I GK+ L F V L + AI Sbjct: 452 RQLDESTFTRALET---IERNAQSQSKLLEDLLDMSRILRGKLQLEFCLVELPAIIGVAI 508 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 A K I +++ +IP I D+ + Q+ N+LSNAI FTP GQI + ++T Sbjct: 509 ETAYPSAKAKDIHLKSVIDESIPLIPGDINRLLQVLGNLLSNAIKFTPPEGQITVQLSYT 568 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 +E I V DTG+G+ + L + + Q Q + G GLGL +A+ +++ + G Sbjct: 569 DSEAHIT-VIDTGIGIKSEFLPYVFERYRQADC--QHKQHGLGLGLAIARYLIELHGGAI 625 Query: 793 YIFST-PAKGTLIEIIFPLY 811 ++ S +GT I PL+ Sbjct: 626 HVNSLGEGQGTTFTIKLPLH 645 >gi|328873441|gb|EGG21808.1| histidine kinase [Dictyostelium fasciculatum] Length = 1361 Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 88/259 (33%), Positives = 132/259 (50%), Gaps = 11/259 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I KQ K + AK+ AE S KSDF+A +SHEIRTP+ IIG +++ + Sbjct: 714 IYNLKQTTIKNTLAKEAAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTDL----T 769 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 EY + S +L I+ND+LD SKIE+G++ L SL + + + + A+ Sbjct: 770 AEQREYLTMVQSSAGSLLTIINDILDFSKIEAGRLELDQTEFSLRNHLYDTLKTMAWRAH 829 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEE 736 +K + + A ++ IL D ++QI N++ NAI FT G I+ I ++N Sbjct: 830 QKGLELVCDIAPDVADILVGDPGRLRQIVTNLVGNAIKFTAEGEVILAVDIDERRSNNVI 889 Query: 737 VI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 VI V DTG+G+ +L + F Q S + GTGLGL ++ MV+ GK Sbjct: 890 VIHFTVTDTGIGIPAEKLHLIFEAFSQADGSITRKYGGTGLGLTISTRMVELMGGKLRAE 949 Query: 796 STPAKGTLIEI--IFPLYD 812 STP G+ E +FP+ D Sbjct: 950 STPGLGSKFEFTAVFPISD 968 >gi|242824735|ref|XP_002488317.1| sensor histidine kinase, putative [Talaromyces stipitatus ATCC 10500] gi|218713238|gb|EED12663.1| sensor histidine kinase, putative [Talaromyces stipitatus ATCC 10500] Length = 2232 Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/246 (32%), Positives = 126/246 (51%), Gaps = 12/246 (4%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H K+ E+ ++ KS FLA +SH++RTP+ IIG SE+++ EY I Sbjct: 1818 HNIKLKEEAANAKSTFLANISHDLRTPMNGIIGLSELLRETNLSKDQG----EYMESIRI 1873 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 + +L ++ND+LD SK+E GKM L ++L + +SE + + +AN L + Sbjct: 1874 CADTLLALINDILDFSKLEVGKMKLSIVSMNLKDTISEVVQAL-FHANRDNKLETVENLD 1932 Query: 693 NIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTGV 746 IP +L D + QI +N+LSN+ FTP+G I + + I V DTG+ Sbjct: 1933 QIPPDLVVLGDPVRLHQIIMNLLSNSYKFTPNGSVSISGKVTRAGKRRIRLECSVSDTGI 1992 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLIE 805 G+++ + + KPF Q +S G+GLGL + KA++ D G + ST GT + Sbjct: 1993 GISDEQKSRLFKPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGTISLESTLGVGTTVT 2052 Query: 806 IIFPLY 811 P + Sbjct: 2053 FHIPFH 2058 >gi|119470180|ref|ZP_01612946.1| sensor protein LuxQ [Alteromonadales bacterium TW-7] gi|119446601|gb|EAW27875.1| sensor protein LuxQ [Alteromonadales bacterium TW-7] Length = 602 Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 81/284 (28%), Positives = 143/284 (50%), Gaps = 8/284 (2%) Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 +LS + + KL Y +I+ KQ + +L AE+ S KS FL+ +SHEIR Sbjct: 198 ILSGKPLYNKLGHFLGYMGLAKNITISKQREFELQAQTLKAEEASQTKSKFLSVMSHEIR 257 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ A++G E++ + P + NY + S ++ ++ D+LD SKIESG ++ Sbjct: 258 TPIHAVMGMIELLLDTEL----TPEQQQLVNYANSSTEILYGLITDVLDFSKIESGTVSC 313 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716 +P + + + IL T +IP+ ++ D + Q+ NI+SNA Sbjct: 314 LKKPFDIKLLTENIVGQFNIIEKSDDILFTTHIDESIPQYVVGDQYRLGQVLFNIMSNAF 373 Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 +T + GQI ++ NE ++ V+D+G+G+ L+ KPF Q+ +S + EG GL Sbjct: 374 KYT-THGQINLNVV-LQNERLVFEVKDSGIGIAKKHLDLIFKPFSQVNDSINRKSEGVGL 431 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 GL ++K ++ G+ + + G+ I P ++ +H D + Sbjct: 432 GLSISKNLLGIMGGEITVDTQLGLGSTFTISIP-FEEAHVSDIV 474 >gi|229589127|ref|YP_002871246.1| putative two-component system sensor kinase [Pseudomonas fluorescens SBW25] gi|229360993|emb|CAY47855.1| putative two-component system, sensor kinase [Pseudomonas fluorescens SBW25] Length = 989 Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/280 (29%), Positives = 139/280 (49%), Gaps = 10/280 (3%) Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 + + L + ++ + + +DI+ E +L A++ A + K+ FLA +SH Sbjct: 455 QGRYLQVVVVAARYEGEDVFLCGCNDITRHVDETLQLDQARQEATAANEAKTVFLATMSH 514 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 EIRTPL ++G E++ + R +Y I S ++ +++++LD+SKIESG+ Sbjct: 515 EIRTPLYGVLGNLELMALTDM----SERQRQYLEIIQGSSTVLFQLISNVLDVSKIESGQ 570 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILS 713 M + P S + V E++ A K + I +P ++L D ++QI N+L Sbjct: 571 MAVEAAPFSPRQLVEESVLGFAATARNKGLQIDAEIDPQVPLQLLGDAGRIRQILHNLLG 630 Query: 714 NAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 NAI FT SG ++ ++ +EV L +V DTGVG+ + LE+ KPF Q+ Q Sbjct: 631 NAIKFTESGRVRLRLTVQALLEDEVALQWQVTDTGVGIPDKALEQLFKPFYQVAGGQD-- 688 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 G G GLGL + + + G + S P G+ + L Sbjct: 689 GNGAGLGLSICSRLSELMGGTMRVVSEPGLGSSFSLFITL 728 >gi|226310516|ref|YP_002770410.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] gi|226093464|dbj|BAH41906.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] Length = 478 Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 107/347 (30%), Positives = 173/347 (49%), Gaps = 33/347 (9%) Query: 472 GIIL-STNRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTEILSLDLR---QTLE 526 GIIL + + K FG E IL F V L ++M YL+ +S LR +T Sbjct: 150 GIILHAPIEGIEKTFGQMRESILWATLFGVLL----STIMVSYLSWSISRPLRTIERTAA 205 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH-- 584 +I G+ E R+ + T +IS+ Q N ++ + E+E H Sbjct: 206 EIGRGNYAE------RVQVD----------TSDEISDLAQTINTMAQKLEKVEQERHHLE 249 Query: 585 --KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 ++DFLA VSHE+RTPLTAI GF E +++ R YA + V +V+ Sbjct: 250 QVRNDFLANVSHELRTPLTAIQGFLEALQDGLVEE-EEARQKYYAVMYTETMQ-VNRLVD 307 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702 DL+D+ K+E+ ++NL PV + + ++ A EK + + + +PRI AD Sbjct: 308 DLMDLMKLENNEVNLVKFPVDVADVMNRVAFSFHQEAEEKGLHMGVEVEDELPRIYADKD 367 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 + QI N++ NA+ FT S G+I + + E V ++V DTG+G+ +L++ + F + Sbjct: 368 RIAQILKNLVKNALKFT-SAGEIRMRAS-LDGEYVQIQVIDTGMGIAADDLDRIWERFFK 425 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + +GTGLGL + K +V+ + GK + S+P KG+ I P Sbjct: 426 VDRGRSKNNKGTGLGLAIVKELVELHDGKCRVESSPGKGSTFTIWLP 472 >gi|220908338|ref|YP_002483649.1| histidine kinase [Cyanothece sp. PCC 7425] gi|219864949|gb|ACL45288.1| histidine kinase [Cyanothece sp. PCC 7425] Length = 800 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 125/233 (53%), Gaps = 5/233 (2%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A++ AE + KS FLA +SHE+RTPL ++GF ++++ L + R E I+R Sbjct: 319 RARQEAEMANRAKSAFLAHMSHELRTPLNVMLGFVQLLERD---TLLSDRQRESLQTINR 375 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG +L ++ND+L++S+IE+G++ LH L + + Q+ K++ + A Sbjct: 376 SGEHLLGLINDVLELSRIEAGRVELHPTAFDLYRFLYTLQEMFQIRVQNKQLSLTLELAK 435 Query: 693 NIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 ++P ++AD ++Q+ +N+L NA+ FT GG + E + V DTG GM Sbjct: 436 DLPPYVVADEGKLRQVLINLLGNALKFTDRGGITVRVGYELIRERLAFVVVDTGRGMATA 495 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 ELE+ +PF Q + EGTGLGL +++ V G+ I S G+ + Sbjct: 496 ELEQLFEPFVQGCTGLNPQ-EGTGLGLTISREFVRLMGGEIQISSAIGCGSTV 547 >gi|86137001|ref|ZP_01055579.1| sensory box sensor histidine kinase/response regulator [Roseobacter sp. MED193] gi|85826325|gb|EAQ46522.1| sensory box sensor histidine kinase/response regulator [Roseobacter sp. MED193] Length = 753 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 97/372 (26%), Positives = 179/372 (48%), Gaps = 17/372 (4%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTP 506 ++E +L + +D + +I++ + N A +++ GY E+I R+P + N P Sbjct: 237 QVEAKRLALVARHANDSVLLIDQNNKVQWVNEAFTRITGYSFEEIQGREPGELL---NHP 293 Query: 507 SVMNHYLTEIL-SLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYSLTMHDI 561 L +++ RQ L K+ + L I+ Y D+ Sbjct: 294 QTNQDTLDKLIEGRRARQPFRLEILNRHKDGHDVWLETNQVPILGNQGGEMSYIAIERDM 353 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 + KQ +L A+ AE+ KSDFLA +SHEIRTP+ +IG +++++ G+ Sbjct: 354 TAAKQNAQQLEEARLAAEEGGRAKSDFLATMSHEIRTPMNGVIGMAQLLEETDLD--GDQ 411 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 R Y N I S +L ++ND+LD+SK+++G+++L+ L + + E I L+ A Sbjct: 412 RL--YTNTILSSAKTLLALINDILDLSKLDAGQISLNPCNFDLHQCLEETIQLLLTQAEA 469 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL 739 K + + ++PR ++ D ++QI N++ NAI FT G ++ + + V+L Sbjct: 470 KGLTLEVERDVDLPRYLVGDDHRLRQILNNLVGNAIKFTEKGRVKVSVEMEPAQDGGVLL 529 Query: 740 --RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + DTG+G+ L + F Q + R G+GLGL +++ + +A G+ + S Sbjct: 530 NCAIIDTGIGIPKDMLTGIFERFSQADAAISRRFGGSGLGLAISRRLAEAMGGRITVTSE 589 Query: 798 PAKGTLIEIIFP 809 G+ ++ P Sbjct: 590 IGSGSCFTLVLP 601 >gi|332705480|ref|ZP_08425558.1| GAF sensor signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332355840|gb|EGJ35302.1| GAF sensor signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 606 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 84/259 (32%), Positives = 136/259 (52%), Gaps = 20/259 (7%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A + AE+ S HKSDFLA SHE+RTPL +IGF +++ + G +P+ E ++ Sbjct: 341 ELEIASERAEEASRHKSDFLANTSHELRTPLNGMIGFLKLVLD---GMADDPQ--EQRDF 395 Query: 630 IDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I + N +L+I+ND+LDI+KIE+GKM L PV LD + A K + + Sbjct: 396 IQEAYNSALHLLNIINDILDIAKIEAGKMELELAPVELDSLFRKVEDFTINQAQLKNLSL 455 Query: 687 RTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHTSNEE--- 736 R + I+ + + + Q+ LN++ NAI FT GG ++I E Sbjct: 456 RIEMPDVYDGIVMYGNYQRLLQVMLNLVGNAIKFTDEGGVTVSAEVIRKKITFKGTEFPG 515 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V +RV DTG+G++ + ++ + F Q+ S+ + GTGLGL +++ +++ G F Sbjct: 516 LVKVRVADTGIGVSLDQQDRLFQTFTQVDGSRTRQYGGTGLGLVISQKLIETMGGVVNFF 575 Query: 796 STPAK-GTLIEIIFPLYDT 813 S G+ + PLY Sbjct: 576 SMGENLGSTVTFTVPLYQV 594 >gi|218886242|ref|YP_002435563.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757196|gb|ACL08095.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1055 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 84/289 (29%), Positives = 142/289 (49%), Gaps = 21/289 (7%) Query: 534 KEEKLLSLRIIIKK-LPFSSC----YSLTMHDISE---WKQEKNKLSHAKKIAEKESSHK 585 +E +L+++ + K LP+ L MH + E ++ L AK AE + K Sbjct: 589 EEGRLVAVAGVANKDLPYERADRRQLELFMHGMWEHIARRRAMVSLRRAKDAAEAANRSK 648 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 +FLA +SHE+RTPL ++G +++ GP + Y SG+ +L I++DLL Sbjct: 649 DEFLANMSHELRTPLNGVLGMLQLLD----GPDLSDERRGYLRTAVESGHALLRIIDDLL 704 Query: 646 DISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADL 701 DIS + +G L F+P ++ V+E + A +R L A+ +P R+ D Sbjct: 705 DISALGAGGSGLRDEPFDPAAVLRQVAEMVD----PAARRRGLALGLIADALPLRVRGDA 760 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 ++Q+ N+++N + FT GG I++ + ++ VRDTG+G+ +L +PF Sbjct: 761 ARLRQVLYNLVANGVKFTHQGGVDILACP-VGGDRLLFTVRDTGIGIPEEKLPVVCEPFA 819 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 Q+ S R +G GLGL + + V G + S GT + + PL Sbjct: 820 QVDGSSTRRYQGAGLGLGIVRRQVARMGGTMTMESEEGVGTSVHVCLPL 868 >gi|169335485|ref|ZP_02862678.1| hypothetical protein ANASTE_01899 [Anaerofustis stercorihominis DSM 17244] gi|169258223|gb|EDS72189.1| hypothetical protein ANASTE_01899 [Anaerofustis stercorihominis DSM 17244] Length = 1313 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 80/246 (32%), Positives = 120/246 (48%), Gaps = 7/246 (2%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 K ++ S KSDFL+R+SHEIRTP+ AIIG + + + L N EY I S Sbjct: 929 GKSRSDSASKAKSDFLSRMSHEIRTPMNAIIGMTNIAMEE--NGLKNSTK-EYLEKISTS 985 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 +L I+ND+LD+S+IESGKM L SL + E +L++ A +K + N Sbjct: 986 SEYLLSIINDILDMSRIESGKMKLSPSNFSLTNLIDEVETLIRPQAEDKELNFNVKANVN 1045 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----HTSNEEVILRVRDTGVGMT 749 + D + QI +N+L NAI FT S G I++ + +V V+D G+G++ Sbjct: 1046 DDVLYGDYMRINQILINLLGNAIKFTQSKGNILLCVREEDYNDKQSKVTFIVKDDGIGIS 1105 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + E+ F Q + I GTGLGL + +V + S KG+ + Sbjct: 1106 SENKERVFHAFEQAEDDTSIHYGGTGLGLAICNNLVKLMGSNIELESDLGKGSTFKFTLI 1165 Query: 810 LYDTSH 815 L +S Sbjct: 1166 LEKSSE 1171 >gi|28900530|ref|NP_800185.1| sensor protein TorS [Vibrio parahaemolyticus RIMD 2210633] gi|260365411|ref|ZP_05777948.1| sensor histidine kinase TorS [Vibrio parahaemolyticus K5030] gi|260877477|ref|ZP_05889832.1| sensor histidine kinase TorS [Vibrio parahaemolyticus AN-5034] gi|260894852|ref|ZP_05903348.1| TMAO reductase sytem sensor TorS [Vibrio parahaemolyticus Peru-466] gi|28808910|dbj|BAC62018.1| sensor protein TorS [Vibrio parahaemolyticus RIMD 2210633] gi|308085317|gb|EFO35012.1| TMAO reductase sytem sensor TorS [Vibrio parahaemolyticus Peru-466] gi|308090921|gb|EFO40616.1| sensor histidine kinase TorS [Vibrio parahaemolyticus AN-5034] gi|308114304|gb|EFO51844.1| sensor histidine kinase TorS [Vibrio parahaemolyticus K5030] Length = 988 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 126/244 (51%), Gaps = 7/244 (2%) Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 + A+ AE+ S KS FLA +SHEIRTP+ ++G + ++ + P+ YA I+ Sbjct: 457 AQARNEAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPIQK----RYAEIIN 512 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 RSG +L I+ND+LD SKIE+G + + L + V + L+ A EK++L Sbjct: 513 RSGKTLLAILNDVLDYSKIEAGHLEIRRLGFDLHQMVEDTFQLMNSRAQEKQLLFSYHIE 572 Query: 692 NNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMT 749 +++ R D+ + Q+ N++ NAI FT G I +S +V+ V DTG+G++ Sbjct: 573 SDVSRYWKGDVTRISQVLNNLVGNAIKFTEDGEIDIYVSLNPEDESQVLFEVSDTGIGIS 632 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + F Q G GTGLGL ++K +V+A G + S +G+ P Sbjct: 633 KKDQKTLFDAFTQAEGGLNQIG-GTGLGLAISKRIVEAMGGVLEVDSEEGEGSRFWFSIP 691 Query: 810 LYDT 813 L ++ Sbjct: 692 LEES 695 >gi|328470474|gb|EGF41385.1| sensor protein TorS [Vibrio parahaemolyticus 10329] Length = 988 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 126/244 (51%), Gaps = 7/244 (2%) Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 + A+ AE+ S KS FLA +SHEIRTP+ ++G + ++ + P+ YA I+ Sbjct: 457 AQARNEAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPIQK----RYAEIIN 512 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 RSG +L I+ND+LD SKIE+G + + L + V + L+ A EK++L Sbjct: 513 RSGKTLLAILNDVLDYSKIEAGHLEIRRLGFDLHQMVEDTFQLMNSRAQEKQLLFSYHIE 572 Query: 692 NNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMT 749 +++ R D+ + Q+ N++ NAI FT G I +S +V+ V DTG+G++ Sbjct: 573 SDVSRYWKGDVTRISQVLNNLVGNAIKFTEDGEIDIYVSLNPEDESQVLFEVSDTGIGIS 632 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + F Q G GTGLGL ++K +V+A G + S +G+ P Sbjct: 633 KKDQKTLFDAFTQAEGGLNQIG-GTGLGLAISKRIVEAMGGVLEVDSEEGEGSRFWFSIP 691 Query: 810 LYDT 813 L ++ Sbjct: 692 LEES 695 >gi|114328501|ref|YP_745658.1| cytosine permease [Granulibacter bethesdensis CGDNIH1] gi|114316675|gb|ABI62735.1| cytosine permease [Granulibacter bethesdensis CGDNIH1] Length = 1168 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/253 (30%), Positives = 133/253 (52%), Gaps = 6/253 (2%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 +L M++I ++ KL AK+ AE + KS F+ SHE+R+PL AI+G+++++ Sbjct: 663 ALLMNEIRAHRRTDAKLQKAKEAAESANLAKSRFVVGASHELRSPLNAILGYAQLMDGDE 722 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P PR+ + RSG + ++ LLDISKIE+G++++ + V L + + + +S+ Sbjct: 723 TLP---PRWQRAIGIMRRSGEHLAGLIEGLLDISKIEAGRIDVARDAVRLGDFLDQIVSM 779 Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A K I +P ++ D R ++QI +N+LSNAI FT G + Sbjct: 780 FRIQAEAKGIDFIFDRPETLPDQVYTDERRLRQILINLLSNAIKFTRYGR--VTFRVRWR 837 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ L + DTG+G+ ELE+ +PF + + G GLGL + K +V G Sbjct: 838 SQIADLDITDTGIGIDEQELERIFEPFHRTSGALHASMPGIGLGLTITKLLVQILGGDIT 897 Query: 794 IFSTPAKGTLIEI 806 + S +G+ I Sbjct: 898 VQSKLGEGSTFHI 910 >gi|331683896|ref|ZP_08384492.1| signal transduction histidine-protein kinase AtoS [Escherichia coli H299] gi|331078848|gb|EGI50050.1| signal transduction histidine-protein kinase AtoS [Escherichia coli H299] Length = 608 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 187/398 (46%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 229 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 288 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + + + +L L E + L + + Sbjct: 289 PAAEVITGYQRHELVGQPYSMLFDHT------QFYSPVLD-TLEHGTEHVALEISFPGRD 341 Query: 537 KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 342 RTIELSVTTSRIHNTHGDMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 396 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q G+P + EY + + + + + ++ LL+ S+ Sbjct: 397 AHEVRNPLTAIRGYVQILRQQT----GDPIHQEYLSVVLKEIDSINKVIQQLLEFSRPRH 452 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + RI + N + I AD +KQ+ LNIL Sbjct: 453 SQ----WQQVSLNALVEETLVLVQTAGVQARIDFISELDNELSPINADRELLKQVLLNIL 508 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 509 INAVQAISARGKIRIRTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFF------TTKAS 562 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 563 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 600 >gi|182413629|ref|YP_001818695.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177840843|gb|ACB75095.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 1085 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 142/263 (53%), Gaps = 12/263 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF-SEVIKNQRFGPL 618 DI+ K+ + +++ A+ A + K DFLA +SHE+RTPL ++ S+ +N L Sbjct: 680 DITARKEAERQVALARDQALAAARAKDDFLAALSHELRTPLNPVLLIASDAAENP---AL 736 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 ++A I ++ L +++DLLD+++I GK+ L PVS ++ + +A+S+++ Sbjct: 737 AAEVRRDFAT-IRKNVELEARLIDDLLDVTRITHGKLPLDLRPVSAEQILQDALSVIRPD 795 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A +KRI + T + + D ++Q+ N+L NA+ FTP+GG+I +++ + + + Sbjct: 796 AEQKRITLVTELTAHRTTVRGDAVRLQQVFWNVLKNAVKFTPAGGRITVTSANLRGGDTL 855 Query: 739 -LRVRDTGVGMTNYELEKAMKPFGQ---IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + VRD G+GMT E+ + F Q S R G GLGL +++ +V+ + G Sbjct: 856 RVAVRDNGIGMTPAEIARVFDAFTQGDHAVGSNSHRFGGLGLGLTISRLLVEQHHGDIRA 915 Query: 795 FST-PAKGTLIEIIFPLYDTSHP 816 S P +G I P+ T+ P Sbjct: 916 ESAGPGQGATFTIELPV--TTQP 936 >gi|119486747|ref|ZP_01620722.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Lyngbya sp. PCC 8106] gi|119456040|gb|EAW37173.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Lyngbya sp. PCC 8106] Length = 1471 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 84/253 (33%), Positives = 140/253 (55%), Gaps = 21/253 (8%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + +L AK+ AE ++ KS FL+RV+HE+R+PL I+GF++++ +R L + + Sbjct: 982 RHRTQELEEAKQKAETANNAKSQFLSRVTHELRSPLNIILGFTQLL--ERCDNLDSQQQ- 1038 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + N I +G +L ++N+LLD+ K+E+ +M L+ E L + E + +L K + Sbjct: 1039 QQVNLIFNNGQQLLKLINELLDLGKVEANRMELNVEWFDLYCLMDELQEMFKLEIQRKGL 1098 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII-----STTHTSNEEVI 738 R + + +P +I D ++Q+ +N+++NAI FT GQI + ST NE+ Sbjct: 1099 EFRVNLDSQVPQQIQTDKTKLRQVLINLITNAIKFT-DVGQICLRVNVDSTLSNQNEDQS 1157 Query: 739 LRVR----DTGVGMTNYELEKAMKPFGQIP---NSQQIRGEGTGLGLPLAKAMVDANMGK 791 L++R DTG G+ EL++ +PF Q NSQQ GTGLGL + + V+ G+ Sbjct: 1158 LKLRFEVEDTGRGIPPEELDRLFEPFVQGKSGRNSQQ----GTGLGLAICRYFVEMMGGE 1213 Query: 792 FYIFSTPAKGTLI 804 + ST GT I Sbjct: 1214 IGVNSTLGAGTRI 1226 >gi|89076676|ref|ZP_01162968.1| hypothetical protein SKA34_13950 [Photobacterium sp. SKA34] gi|89047657|gb|EAR53262.1| hypothetical protein SKA34_13950 [Photobacterium sp. SKA34] Length = 701 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 130/255 (50%), Gaps = 7/255 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ K+ L A+K AE + KS F+A +SHEIRTPL A++G E + Sbjct: 302 TAKDITSRKRRLFDLQEAQKQAETANKAKSQFIAMMSHEIRTPLNAVLGLMESLS---LS 358 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L N + + + + +D+S +L+L I+ND+LD+S+IESG L +++ E++ + Sbjct: 359 GLNNKQNL-WLSQMDQSAHLLLTIINDILDLSRIESGSFRLFNSDINVVESIRLVADQLA 417 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A + + + + IP+ I D + Q+ N++ NA+ FT G +++ N Sbjct: 418 PQATKNNVQFQCEIDDAIPKQIYGDKNRIAQVLFNLIGNAVKFTSIGSVRVVARKVDDNI 477 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 E+ V DTG+G+ PF Q S R GTGLGL +++ +++ G + Sbjct: 478 EIA--VIDTGIGIAKDAQANIFNPFHQADGSITRRYGGTGLGLAISQHLIEKMDGTISLE 535 Query: 796 STPAKGTLIEIIFPL 810 S G+ +I P+ Sbjct: 536 SELGTGSCFKISIPI 550 >gi|329132020|gb|AEB77971.1| GacS [Pseudomonas sp. F96.26] Length = 203 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 123/205 (60%), Gaps = 8/205 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y I++S + +L I+N++ Sbjct: 3 KSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQLDYLGTIEKSADSLLGIINEI 58 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRTSFANNIPRILADLRS 703 LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ + + ++ D Sbjct: 59 LDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLSLVGDPLR 118 Query: 704 VKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 +KQI N++SNAI FT G + ++ H + ++ + ++DTG+G++ ++ + F Sbjct: 119 LKQILTNLVSNAIKFTREGTIVARAMLEDEHEDSVQLRISIQDTGIGLSAQDVRALFQAF 178 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMV 785 Q NS + GTGLGL ++K +V Sbjct: 179 SQADNSLSRQPGGTGLGLVISKRLV 203 >gi|326565978|gb|EGE16139.1| two-component system sensor histidine kinase [Moraxella catarrhalis 103P14B1] gi|326575373|gb|EGE25298.1| two-component system sensor histidine kinase [Moraxella catarrhalis 101P30B1] Length = 988 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 86/263 (32%), Positives = 132/263 (50%), Gaps = 24/263 (9%) Query: 557 TMHDIS----EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 T HD+ E + + + +A+ A S KS FLA +SHE+RTPL +I GF ++ Sbjct: 289 TEHDLQQAFDEMEMQNISIRNARDAAISTSQAKSAFLANISHELRTPLNSIDGFINLLA- 347 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 R G L + + Y I +S +L +VND+LD SKIE+GK+ L L +AV + + Sbjct: 348 -RKGELTGEQNL-YVQTIKKSSAHLLALVNDVLDFSKIEAGKLILDSHDFDLYDAVYDVV 405 Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 ++ A EKR+ + F +++P RI+ D VKQI N++ NAI FT G ++ + Sbjct: 406 DMLSPAALEKRLRLAVLFYDDVPTRIIGDSLRVKQILTNLVGNAIKFTDMGSVVVRVSLA 465 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD----- 786 + + V DTG G++ + E+ + F Q S R GTGLGL ++K + Sbjct: 466 EKTGYLCIEVEDTGKGISESDKEQLFQSFSQGDLSVTRRYGGTGLGLVISKQLTQLMGGS 525 Query: 787 -----------ANMGKFYIFSTP 798 AN G + F P Sbjct: 526 IGFIDNRSENIANAGATFWFEMP 548 >gi|260774546|ref|ZP_05883459.1| multi-sensor hybrid histidine kinase [Vibrio metschnikovii CIP 69.14] gi|260610452|gb|EEX35658.1| multi-sensor hybrid histidine kinase [Vibrio metschnikovii CIP 69.14] Length = 999 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 110/381 (28%), Positives = 186/381 (48%), Gaps = 20/381 (5%) Query: 443 NKRKMEIEVMQ----LCSILEATSDGIAII--NREGIILSTNRAVSKLFGYPVEDILRK- 495 ++ EI + Q L ++L+A S+ I+II N+ G+I + N L GY +++ K Sbjct: 356 QRKTAEIALSQAERFLATVLDAASE-ISIIATNKHGLITAFNTGAEHLLGYSKHEMIGKQ 414 Query: 496 -PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK---LPFS 551 P ++ LE+ + + LT +L + + + + + + K +P S Sbjct: 415 TPASLHLEEEV-AARSVELTALLGYPVEGFRVFVDIAEQENHEKREWTYVHKNGRHIPVS 473 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAE--KESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 + TM + E + L A+ I E + + KS+F++ VSHE+RTPLT+I G + Sbjct: 474 LIVT-TMRN--EAGEITGYLGIAEDITEYKRMNKMKSEFISTVSHELRTPLTSISGALGL 530 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 I RF L + + + R+ + ++NDLLDI KI +GK++ L V Sbjct: 531 IIGSRFEELPD-KTQKLLKTAHRNNQRLSHLINDLLDIEKIAAGKLHFDMRLHELTLLVE 589 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 +AI Q Y + + + IR N + D + + Q+ N+LSNAI F+ GQ+I+ Sbjct: 590 QAIETNQHYGSSRDVSIRLICDANTVLVHVDSQRLLQVLANLLSNAIKFSSDHGQVIVEV 649 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 T T N + I+ V D G G+ E+ + F Q +S EGTGLGL +++ +++ Sbjct: 650 T-TDNGKAIVSVIDQGPGINQAFRERIFQRFAQADSSDTRAKEGTGLGLAISRELIERMG 708 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G+ ST KG+ + PL Sbjct: 709 GQIDFESTMGKGSRFFFVLPL 729 >gi|332829883|gb|EGK02523.1| hypothetical protein HMPREF9455_01391 [Dysgonomonas gadei ATCC BAA-286] Length = 1409 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 81/256 (31%), Positives = 133/256 (51%), Gaps = 12/256 (4%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q K + +KK+ E S F ++HE RTP+T IIG E + NP+ +E Sbjct: 876 QRKQLIGMSKKVQEAMDDRMS-FFTNITHEFRTPITLIIGPIE----RALKLSTNPKVVE 930 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y+ R+ +L +VN L+D K+ES M+++ +L + E + + +ANE+ I Sbjct: 931 QLQYVSRNSKHLLSLVNQLMDFRKVESDSMSVNPTAGNLINFLDELLIPFESFANERSIK 990 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII--ISTTHTSNEE--VILRV 741 IR + PRI+ D +++++ N+L+N+I FTP GG + +ST SN E + + V Sbjct: 991 IRRVYRMPHPRIMFDEEAIRKLITNLLANSIKFTPDGGSVTLYVSTITGSNREDKLYICV 1050 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQ--IRGE-GTGLGLPLAKAMVDANMGKFYIFSTP 798 RD+G+G+ + +L + F Q + + G+ GTG+GL L K +V+ G + Sbjct: 1051 RDSGIGIKDEDLNRIFNRFYQSDTRAKYPVYGQSGTGIGLYLCKNIVNLLEGSIAARNNH 1110 Query: 799 AKGTLIEIIFPLYDTS 814 KG I+ PL S Sbjct: 1111 TKGASFRILLPLIAAS 1126 >gi|39996387|ref|NP_952338.1| sensory box sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39983267|gb|AAR34661.1| sensory box sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] Length = 772 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 122/247 (49%), Gaps = 8/247 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI++ + + +L A A S K DFLA +SHEIRTP+ +IG E+++ Sbjct: 268 DITDRSKMEGELRAAHAAAVDSSRAKIDFLANMSHEIRTPMNGVIGTLELLRETDL---- 323 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +PR EYA S +L ++N +LD SKIES ++ L P ++ EAV A+ + A Sbjct: 324 DPRQREYAEIARESAESMLAVINMVLDYSKIESHQLVLEAVPFAIREAVERAVKPFRAVA 383 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNE 735 K +++ ++P ++ D QI N++ NA+ FT G Q+ + Sbjct: 384 ARKGVMVAADVPPHVPETVVGDPVRFSQIVANLVGNAVKFTEQGAITVQLGAAAVDDCRI 443 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +V V DTG G++ + + PF Q S GTGLGL + + +V+A G + Sbjct: 444 DVSCSVGDTGAGISPEKFDTIFDPFVQADGSTTRIHGGTGLGLAIVRRLVEAMDGVISVA 503 Query: 796 STPAKGT 802 S P G+ Sbjct: 504 SEPGMGS 510 >gi|323491190|ref|ZP_08096376.1| hybrid sensory histidine kinase BarA [Vibrio brasiliensis LMG 20546] gi|323314558|gb|EGA67636.1| hybrid sensory histidine kinase BarA [Vibrio brasiliensis LMG 20546] Length = 929 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 130/252 (51%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ Q +Y Sbjct: 275 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFT----RQMLKTTLTNSQTDYLQT 330 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S N +L+I+ND+LD SK+E+GK+ L P ++ E +SL A+EK + + Sbjct: 331 IEKSANNLLNIINDILDFSKLEAGKLALENIPFDFQGSLEEVVSLQATSAHEKGLELTLK 390 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDT 744 IP ++ D ++Q+ N++ N+I FT G I IS S + E+ VRDT Sbjct: 391 IDPKIPAGLVGDPLRIQQVLTNLVGNSIKFTERGN-IDISVEMRSQKDDLVELQFMVRDT 449 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 450 GIGISERQQSQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTF 509 Query: 805 EIIFPLYDTSHP 816 L T P Sbjct: 510 WFTLRLSATDMP 521 >gi|294777087|ref|ZP_06742544.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] gi|294448956|gb|EFG17499.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] Length = 632 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/239 (33%), Positives = 131/239 (54%), Gaps = 12/239 (5%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK+ AE+ + K+ FLA +SHEIRTPL AI+GFS V+ + P Y + I ++ Sbjct: 400 AKEKAEESNRLKTAFLANMSHEIRTPLNAIVGFSSVLVSDDSSPAEKEL---YCDIIQKN 456 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 +L+L ++ND+LDIS++ESG++ +E + E A+S V+ Y + L F Sbjct: 457 SDLLLHLINDILDISRMESGRIKFVWEECDVVELCQTALSTVE-YGRKTSALFL--FETP 513 Query: 694 IPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 +P ++ D + +KQ+ +N+LSNA FTPSG + ++++ L V DTG G+ Sbjct: 514 VPSLVVKTDAQRLKQVLINLLSNAAKFTPSGSIKLTVAIDKQHQQLELSVSDTGCGIPPD 573 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + EK + F ++ Q GTGLGL +++ +++ GK ++ +G PL Sbjct: 574 KSEKVFERFEKLNEYSQ----GTGLGLAISRLIIENLGGKIWVDKDYTEGARFVFTHPL 628 >gi|147677932|ref|YP_001212147.1| hypothetical protein PTH_1597 [Pelotomaculum thermopropionicum SI] gi|146274029|dbj|BAF59778.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 621 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/264 (27%), Positives = 135/264 (51%), Gaps = 15/264 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN---QRFG 616 +I+E K+ + L + + + K+DFL+ VSHE+RTPLT+++GF+++ + + Sbjct: 116 EITERKKVEEALRQSNEKLTELDELKTDFLSTVSHELRTPLTSVLGFAKITQKRLEEHIF 175 Query: 617 PL--GNPRYIEYA--------NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 PL R IE I G + +++ND+LDI+K+E+GK+ E +S+ + Sbjct: 176 PLIISTDRRIEKTVKQVKDNLEIIVSEGERLTELINDVLDIAKLEAGKIEWKMEKLSMAD 235 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 + A + +K + +P + D + Q+ +N++SNA+ FT G + Sbjct: 236 VIERATAASSYLFEQKGLAFFKEIEEGLPDLTGDRDRLIQVIINLISNAVKFTNEGS--V 293 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 +E+ + V DTG+G+ + E+ + F Q + + +GTGLGL + K +V+ Sbjct: 294 TCRARMIGDEITVSVIDTGIGIAREDHERIFEKFKQAGETLTDKPKGTGLGLAICKQIVE 353 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPL 810 + G+ ++ S P KG+ P+ Sbjct: 354 HHGGRIWVESEPGKGSSFSFALPV 377 >gi|189347431|ref|YP_001943960.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245] gi|189341578|gb|ACD90981.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245] Length = 1397 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/266 (29%), Positives = 139/266 (52%), Gaps = 15/266 (5%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + L A+ AE + KS+FLA +SHEIRTP+ +IG + ++ N Sbjct: 854 RHETALLDARLAAEAANRAKSEFLANMSHEIRTPMNGVIGMTRLLLNTSLA----EEQRS 909 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 +A SG +L ++ND+LD SKIE+GK+ L L + + +++ + A +K + Sbjct: 910 FAQTALASGESLLTVINDILDFSKIEAGKLELEEISFDLRLLLDDFAAIMAVKAGDKGLE 969 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--V 741 + ++P R + D ++QI N+ NA+ FT G + +S ++EEV++R V Sbjct: 970 FICAALPDVPVRFIGDPDRIRQILTNLAGNAVKFTHKGEVAVYVSLLRETDEEVLVRFSV 1029 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +DTG+G+ +L++ + F Q+ S + GTGLGL +++ +V+ G+ + S G Sbjct: 1030 KDTGIGIPREKLDRLFRSFTQVDASMTRKYGGTGLGLAISRQLVELMSGEIGVNSQSGIG 1089 Query: 802 -------TLIEIIFPLYDTSHPHDCI 820 +L + IFP + +P D I Sbjct: 1090 SEFWFTLSLKKNIFPSENGQYPLDSI 1115 >gi|319651161|ref|ZP_08005293.1| hypothetical protein HMPREF1013_01905 [Bacillus sp. 2_A_57_CT2] gi|317397143|gb|EFV77849.1| hypothetical protein HMPREF1013_01905 [Bacillus sp. 2_A_57_CT2] Length = 468 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 131/250 (52%), Gaps = 4/250 (1%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E Q N +H +KE K DFLA VSHE+RTP++ + G+SE + ++ + + Sbjct: 221 EIGQLANAFNHMSSSIQKEDEKKKDFLANVSHELRTPISYVKGYSEALISEMAESEEDRQ 280 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +Y I R + +V DLLD+SK+ES + L P+ L + + +AI + EK Sbjct: 281 --KYLQLILRESKRMERLVGDLLDLSKLESDEYKLEKMPLPLGQLIEDAIEKYKPILREK 338 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + ++ + I D ++QI NI+ N+I +T G +I I + ++ ++ + Sbjct: 339 NLDLQYRLDPEVI-INGDEGRIEQIIQNIMDNSIRYTAEG-RISIRLSQEKEDKCVIEIE 396 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G++ L K + F ++ + GTGLGL +A+ +V + G+ + S KGT Sbjct: 397 DTGIGISEEHLSKIKQRFYRVNKGRTRSDGGTGLGLAIAEKLVKLHQGELTVLSELNKGT 456 Query: 803 LIEIIFPLYD 812 + I+ PL++ Sbjct: 457 TVRIVLPLFE 466 >gi|126651383|ref|ZP_01723590.1| two-component sensor histidine kinase (phosphate regulation) [Bacillus sp. B14905] gi|126591912|gb|EAZ85995.1| two-component sensor histidine kinase (phosphate regulation) [Bacillus sp. B14905] Length = 510 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 97/373 (26%), Positives = 180/373 (48%), Gaps = 42/373 (11%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TVFLEQNTP 506 E+E +L +++E + +I REG I NR + FG ++++ K F T+ L ++ Sbjct: 167 EVEEERLKTLIENMGSSLMMIGREGNISIVNRVFLERFGMQIDEVQGKVFRTIGLPKSLE 226 Query: 507 SVMNH-YLTEI-----LSLDLRQTL-EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559 ++H +LTE+ + ++++Q L K G+ +I + MH Sbjct: 227 QFIDHVFLTEMPYRQQIKMEIKQELYNKEVYGAP----------VIGDHGRWLGVVIVMH 276 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E +L +K DF+A VSHE+RTP+T+I GFSE + + + Sbjct: 277 DITELV----RLEQIRK----------DFVANVSHELRTPITSIKGFSETLLDGAYKD-- 320 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 I + I + N + ++ DLL++SKIE ++ P+ L + + L Sbjct: 321 EKMLISFLEIIYKESNRLQMLIQDLLELSKIEQHGFTVNIMPMGLQDVLIRGAELTAPRL 380 Query: 680 NEKRILIRTSFANNIPR---ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 +EK + SF +I R ++ D + QI N+++NAI ++P + I Sbjct: 381 DEKNM----SFQVDIDRDVQVMGDANRIIQIVTNLITNAITYSPENTTVSIRLKENETHG 436 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +I + D G+G+ +E+ + + F ++ ++ GTGLGL + K +V+A+ G+ + S Sbjct: 437 II-EIEDQGIGIEKHEIARVFERFYRVDRARSRNSGGTGLGLAIVKHLVEAHHGRIQVES 495 Query: 797 TPAKGTLIEIIFP 809 GT++ ++ P Sbjct: 496 EVGVGTIMIVMIP 508 >gi|156742601|ref|YP_001432730.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156233929|gb|ABU58712.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 641 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 103/385 (26%), Positives = 182/385 (47%), Gaps = 45/385 (11%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +LE+ S + +++ + I+ NRA + G +++ KP L + P V++ Y I Sbjct: 248 VLESMSQSVIVLDDDNRIVDINRAAQHVIGCTAAEVIGKPIRQALSR-WPQVLDRYY-NI 305 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQ------ 566 + L+ LE E + L L ++I L + + HDI+ KQ Sbjct: 306 VELNEEVQLEI-------EGRPLVLDVLISPLRDRNGRLRGRLIVWHDITRLKQIEEVLR 358 Query: 567 ----EKNKLSHAKKIA--EKESSH--KSDFLARVSHEIRTPLTAIIGFSEVIK---NQRF 615 E L +A + E++H KS FLA +SHE+RTPL+AI+G++++I+ +R Sbjct: 359 QRNDELTALQQTLMVARDQAEAAHRAKSAFLAHMSHEVRTPLSAILGYTDLIRLDLTRR- 417 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G Y E I S +L ++N++LD+SKI++G+M L+ E S++ V Sbjct: 418 ---GQSVYQEELEAIHASAQHLLTMINNILDLSKIDAGRMPLYIELFSIEALVHNVTQTA 474 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-------QIIIS 728 + A + A + + +D ++Q+ LN+LSNA FT +G ++ +S Sbjct: 475 RPLAARNGNSLTVIRAPDADLMTSDKTKIRQVLLNLLSNAAKFTENGAISLRIWRELSLS 534 Query: 729 TTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + ++ ++ + DTG+G+ L + F +I ++ R GTGLGL +++ Sbjct: 535 PAMKAIDDGADWIVFEIADTGIGIAPEHLPLLFQDFSRIEDADHQRYGGTGLGLAISRQF 594 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809 G + S P KGT + P Sbjct: 595 CRLMGGDITVASAPGKGTTFTVRLP 619 >gi|39726361|gb|AAR30123.1| putative histidine kinase HHK6p [Gibberella moniliformis] Length = 1369 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 123/241 (51%), Gaps = 10/241 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTP+T ++G +E++ + + EY I S +L ++ND+ Sbjct: 799 KSQFLANMSHEIRTPITGVLGMAELLSGMQL----DAEQQEYVENIQSSATSLLTVINDI 854 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---ILADL 701 LD SK+ESG++++ SL V E ++Q K + ++ + I ++ D Sbjct: 855 LDFSKVESGRLDIEEVQFSLSHIVKEVGRMLQFAVERKNLDFQSDIGDGIENDLVVIGDP 914 Query: 702 RSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMK 758 V+QI N+L+N+I FT G + ++ ++E + +R V D+G+G+ + +K + Sbjct: 915 GRVRQILTNLLTNSIKFTNQGYVRFSVTAEKETSESIEVRFTVEDSGIGIQDDVRKKLFQ 974 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 PF Q S R GTGLGL + K ++D G+ + S GT P S P + Sbjct: 975 PFSQGDASTARRFGGTGLGLTICKNLLDLMHGRISLESNVGVGTRATFWIPFNKPSGPAE 1034 Query: 819 C 819 Sbjct: 1035 A 1035 >gi|34498703|ref|NP_902918.1| hypothetical protein CV_3248 [Chromobacterium violaceum ATCC 12472] gi|34332873|gb|AAQ60912.2| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 1480 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 85/251 (33%), Positives = 131/251 (52%), Gaps = 11/251 (4%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DIS K+ + L AK+ AEK + K+ F+A +SHEIRTP+ AI+G ++ R Sbjct: 868 LTDISRRKETEQTLVQAKEAAEKANLAKTAFVANMSHEIRTPMNAILGMVYLLSQGRL-- 925 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + + + IDRS +L+++ND+LD+SK + GK+ L L ++ + LV Sbjct: 926 --SAQQQHQLDTIDRSARHLLNLINDILDLSKADVGKLQLALSDFDLARLPADVMGLVAD 983 Query: 678 YANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A K + L + A +P + D + Q LN+LSNA+ FT G+I IS + +E Sbjct: 984 QAKAKGLQLSLQADAGPLP-VRGDATRLTQCLLNLLSNAVKFTER-GRIAISLSIDGEDE 1041 Query: 737 --VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 V+ R VRDTG+G+ + F Q S R GTGLGL + K + + G Sbjct: 1042 YGVLARFEVRDTGIGIPAEVQPRLFGAFEQADASTTRRYGGTGLGLAITKRLAELMGGAV 1101 Query: 793 YIFSTPAKGTL 803 + S P +G+L Sbjct: 1102 GVESAPGQGSL 1112 >gi|83645119|ref|YP_433554.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83633162|gb|ABC29129.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 797 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 81/256 (31%), Positives = 133/256 (51%), Gaps = 10/256 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKES----SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 ++SE ++ K +H ++A++E+ ++DFLA +SHEIRTP ++G + + Sbjct: 263 ELSEKNKQLIKSNHDLRVAKEEAVSRAKARADFLANMSHEIRTPFNGVLGMISLTLEE-- 320 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 PL + E N SG +L+++ND+LDISK+E+GK+ L L + V + L+ Sbjct: 321 -PLSEKQK-EQLNVAYSSGVALLELLNDILDISKVEAGKLTLENIAFDLRKTVEDVSRLL 378 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A+ K + + T+ P R+ D ++QI N+ NAI FT +G + +S + N Sbjct: 379 AQNAHAKNVALYTNIDPAFPERVYGDPTRIRQIVSNLTGNAIKFTETGS-VTVSLSLLKN 437 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + V + V DTG+G+ LE PF Q + GTGLGL L + +V GK + Sbjct: 438 QSVEICVSDTGIGIEADRLEFIFSPFSQGDADITRKYGGTGLGLTLCRQLVTHMGGKIEV 497 Query: 795 FSTPAKGTLIEIIFPL 810 S +G+ + PL Sbjct: 498 VSERGRGSSFMVTLPL 513 >gi|298505397|gb|ADI84120.1| sensor histidine kinase response regulator, PAS and PAS domain-containing [Geobacter sulfurreducens KN400] Length = 772 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 122/247 (49%), Gaps = 8/247 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI++ + + +L A A S K DFLA +SHEIRTP+ +IG E+++ Sbjct: 268 DITDRSKMEGELRAAHAAAVDSSRAKIDFLANMSHEIRTPMNGVIGTLELLRETDL---- 323 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +PR EYA S +L ++N +LD SKIES ++ L P ++ EAV A+ + A Sbjct: 324 DPRQREYAEIARESAESMLAVINMVLDYSKIESHQLVLEAVPFAIREAVERAVKPFRAVA 383 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNE 735 K +++ ++P ++ D QI N++ NA+ FT G Q+ + Sbjct: 384 ARKGVMVAADVPPHVPETVVGDPVRFSQIVANLVGNAVKFTEQGAITVQLGAAAVDDCRI 443 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +V V DTG G++ + + PF Q S GTGLGL + + +V+A G + Sbjct: 444 DVSCSVGDTGAGISPEKFDTIFDPFVQADGSTTRIHGGTGLGLAIVRRLVEAMDGVISVA 503 Query: 796 STPAKGT 802 S P G+ Sbjct: 504 SEPGMGS 510 >gi|307725772|ref|YP_003908985.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] gi|307586297|gb|ADN59694.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] Length = 1198 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 138/250 (55%), Gaps = 3/250 (1%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E + ++ L+ + E+ S +KS+FLA +SHE+RTPL + + +++++ R G L Sbjct: 466 AELLRAQDDLAANAERLEQSSRYKSEFLANMSHELRTPLNSSLILAKLLQQNRTGNL-TE 524 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + YA I S + +L ++ND+LD+SK+E+G++++ E VS+D + L + A Sbjct: 525 EQVRYAETIHASNSDLLVLINDILDLSKVEAGQVSVELETVSIDATLQSLEELFKPMAGA 584 Query: 682 KRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K + L+ I++D + V QI N+LSNA+ FT G++ +S + + + + Sbjct: 585 KHLSLVFDRLPGAPETIVSDGQRVTQILRNLLSNAVKFTER-GEVALSVSPADDGMLRID 643 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 VRD+G+G+ +LE + F Q S + G+GLGL +++ G+ + S K Sbjct: 644 VRDSGIGIAADKLEMIFEAFQQADGSTSRQYGGSGLGLSISREFARLLGGRITVASELGK 703 Query: 801 GTLIEIIFPL 810 G++ + PL Sbjct: 704 GSVFTLWLPL 713 >gi|228987835|ref|ZP_04147944.1| hypothetical protein bthur0001_45030 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771883|gb|EEM20340.1| hypothetical protein bthur0001_45030 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 558 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 97/376 (25%), Positives = 180/376 (47%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ L + + + + P Sbjct: 211 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEEYLDRLY--YESFHHPE 268 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 ++ + +E+I + K K + L + I++ F Sbjct: 269 II-------------ELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 315 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 316 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 359 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L V + + + Sbjct: 360 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHM 418 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + + ++ D +KQI +N+++NAI +TP+GG + + Sbjct: 419 VLDNKAGEKEISLQVNALKRVS-VIGDPSRLKQIFINLMNNAIVYTPAGGVVSVELAEDK 477 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 478 YNAYI-KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 536 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 537 VDSEVGEGTTFTVVLP 552 >gi|257792818|ref|YP_003183424.1| histidine kinase [Eggerthella lenta DSM 2243] gi|257476715|gb|ACV57035.1| histidine kinase [Eggerthella lenta DSM 2243] Length = 554 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 84/273 (30%), Positives = 134/273 (49%), Gaps = 11/273 (4%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y L + D + ++ L A IA + KS FLA +SH+IRTP+ AI+G +++ Sbjct: 146 YVLVLSDRTNEQKGSLMLEQALDIARSSNEAKSQFLANMSHDIRTPINAIVGMTKI---A 202 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS--EA 671 R + + + I S +L+++ND+LD+S+IESG+M L +D+ V EA Sbjct: 203 RESGEASEKIAGCLDAITASSRHLLELINDVLDMSRIESGQMELQERRFDIDDVVGGVEA 262 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII---- 727 I Q A + + I S + +LR + QI LN+ SNA+ +T GG I + Sbjct: 263 IIRPQAQAKSQELRIDRSKMKHKAFSGDELR-ISQILLNLASNAVKYTQEGGSIALVVQE 321 Query: 728 -STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + T S V + D G+GM+ +E+ PF + R +GTGLG+ + KA++D Sbjct: 322 LAKTRPSYASVAFTITDNGMGMSPEFVERIFDPFERSEEVSIARIQGTGLGMSITKALID 381 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 A G + S +G+ + L S C Sbjct: 382 AMGGIVEVDSEKGRGSSFRVTLELRVVSSADAC 414 >gi|212212502|ref|YP_002303438.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212] gi|212010912|gb|ACJ18293.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212] Length = 683 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 81/255 (31%), Positives = 142/255 (55%), Gaps = 8/255 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++ + +L AK+ AE+ + KSDFLA +SHE+RTPL AI+G S+++K Sbjct: 281 DVTNDALREKELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMSQILKTHNLSDEQ 340 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + I ++G +L ++NDLLD +K+E+GK++ E + L E V + + L A Sbjct: 341 QGQ----IDVISQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHELVMKIKGDMLLLA 396 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEEV 737 ++K I ++ + NIP +++ D + ++Q+ +N+LSNA+ FT G Q+ + ++++ Sbjct: 397 HKKGIQLKFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEKGYVQLTANCLKKDHKKM 456 Query: 738 IL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 L V+DTG+GM +L F QI + Q + +G GLGL + K +++ G + Sbjct: 457 TLCFTVKDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVKELLEKMGGTISVT 516 Query: 796 STPAKGTLIEIIFPL 810 P G+ I P Sbjct: 517 IEPGVGSEFTCIIPF 531 >gi|254422420|ref|ZP_05036138.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196189909|gb|EDX84873.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 1023 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 84/276 (30%), Positives = 138/276 (50%), Gaps = 34/276 (12%) Query: 557 TMHDISEWKQEKNKLSHAK----KIAEK----------ESSHKSDFLARVSHEIRTPLTA 602 T DI++ KQ + +L+ K +I E S KS FLA +SHEIRTP+ A Sbjct: 298 TAFDITQQKQLEKRLTLEKLEQQRINESLAIAIKAAEAASQAKSSFLAMMSHEIRTPMNA 357 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 ++G +E++ +P+ ++ N I GN +L ++ND+LD SKIES + L Sbjct: 358 MLGMAELLDGTEL----SPQQQDFINIIRTGGNTLLTVINDILDFSKIESNNLELEISRF 413 Query: 663 SLDEAVSEAISLVQLYANEKRI----LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIH 717 L E + + ++L A EK++ ++ + IP D+ ++QI N++SN+I Sbjct: 414 DLYECIEQVLTLFSNQAEEKQLSLTSIVEPIELDRIPTYFKGDVTRLQQILSNLVSNSIK 473 Query: 718 FTPSGG---QIIISTTH--------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 FT G Q+ + +SN E+ V DTG+G+ ++ +PF Q+ S Sbjct: 474 FTQEGEVSLQVKVGAVASEERAEEPSSNYELQFLVTDTGIGIAEEKIPYLFQPFSQVDAS 533 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 R GTGLGL ++K +V+ G+ + S G+ Sbjct: 534 MTRRYGGTGLGLAISKQLVELMGGEMGMVSKVGSGS 569 >gi|118479735|ref|YP_896886.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|118418960|gb|ABK87379.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus thuringiensis str. Al Hakam] Length = 587 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 100/376 (26%), Positives = 182/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ +L++ Sbjct: 240 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEE--------YLDRLYYE 291 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 +H TEI+ L +E+I + K K + L + I++ F Sbjct: 292 SFHH--TEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 344 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 345 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 388 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L V + + + Sbjct: 389 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHM 447 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+GG + + Sbjct: 448 VLDNKAGEKEISLQVNTLKRVS-VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDK 506 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 507 YNAYI-KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 565 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 566 VDSEVGEGTTFTVVLP 581 >gi|170077312|ref|YP_001733950.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] gi|169884981|gb|ACA98694.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] Length = 774 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 134/233 (57%), Gaps = 5/233 (2%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK+ AEK + KS FLA +SHE+RTPL+AI+GF+E++ L + + +E + I Sbjct: 373 LQAAKEEAEKANQAKSQFLANMSHELRTPLSAILGFTELLTGD--TNLTSDQ-LESLDII 429 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 +S +L+++ND+L +SKIE+G+ ++ E +L EA++ V L A +K++ + Sbjct: 430 TQSAQHLLNLINDILSLSKIEAGETSVLREAFNLVEALNVIYDFVVLAAKQKQLELIFER 489 Query: 691 ANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 N+P ++ D + +KQ+ +N+LSNAI FT G + T + + V DTG G+ Sbjct: 490 DANVPEVIYLDEKKLKQVLINLLSNAIKFTEVGRVTLKITYDAHQQNLHFAVIDTGPGIP 549 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +E K + F Q + R +GTGLGL +++ +V G+ + + +G+ Sbjct: 550 EHEQNKLFQVFQQTSTGIRSR-QGTGLGLAISQQLVQLMGGEIRVTTAENQGS 601 >gi|120553043|ref|YP_957394.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] gi|120322892|gb|ABM17207.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] Length = 1182 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 78/242 (32%), Positives = 125/242 (51%), Gaps = 4/242 (1%) Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 +A + KS FLA +SHEIRTPL AIIG+ E + + L A + RSG Sbjct: 558 LARNSAQAKSQFLANMSHEIRTPLAAIIGYGETLLDP---DLNETEKRSSAETVVRSGRH 614 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP- 695 +L++VND+LD SKI++ K+++ PV+L E + E + A EK + +P Sbjct: 615 LLELVNDILDHSKIDANKLDVDVVPVNLPELLDEIRAFFAPRAREKGLDFSIICDYPLPE 674 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 +I D +QI +N+ NA+ FT +G +I E++ RV DTG+GM +L++ Sbjct: 675 KIRTDPTRYRQIIINLCGNALKFTENGSISLIIRCDRGAEKLYARVVDTGIGMKPEQLDR 734 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 PF Q + + GTGLGL +++ + + G + ST +G+ E+ + + Sbjct: 735 LFDPFAQGSTAISRQYGGTGLGLSISRRLAELLGGDIRVSSTYGEGSEFEVCISTGELAQ 794 Query: 816 PH 817 H Sbjct: 795 VH 796 >gi|85111598|ref|XP_964013.1| hypothetical protein NCU02057 [Neurospora crassa OR74A] gi|28925771|gb|EAA34777.1| conserved hypothetical protein [Neurospora crassa OR74A] Length = 1319 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/258 (30%), Positives = 133/258 (51%), Gaps = 10/258 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI EK +L + A++ S KS FLA +SHEIRTP+T +IG +E++ + Sbjct: 702 RDIEAQALEKRQLLANEAAAKEASRLKSQFLANMSHEIRTPITGVIGMAELLLDVEL--- 758 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + E I RS N +L ++ND+LD SKIESG++++ SL + E ++ Sbjct: 759 -DAEQRELTENIFRSANALLTVINDILDFSKIESGRLDIEEVQFSLAVVIQEVGKMLSFT 817 Query: 679 ANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 A K + ++I ++ D V+QI N+ +N+I FT G ++ +S ++ Sbjct: 818 AERKSLAFNYEICSDIGIDLVVMGDPGRVRQIITNLATNSIKFTHEGHVKLHVSVEQETD 877 Query: 735 E--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + EV ++DTG+G+ L++ +PF Q S + GTGLGL ++K +++ G+ Sbjct: 878 DTIEVKFVIQDTGIGIEEEVLKRLFQPFSQGDPSTARKFGGTGLGLTISKNLLELMKGRM 937 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S +GT P Sbjct: 938 ALASKKDEGTTATFWIPF 955 >gi|300690102|ref|YP_003751097.1| sensor protein [Ralstonia solanacearum PSI07] gi|299077162|emb|CBJ49788.1| Sensor protein [Ralstonia solanacearum PSI07] Length = 995 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 75/253 (29%), Positives = 129/253 (50%), Gaps = 8/253 (3%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 ++D++ + + + L A++ AE K FLA +SHEIRTP+ ++G E+++ R Sbjct: 349 LYDVTVERAQADALEAARQAAESALRAKDRFLAMMSHEIRTPMNGVLGLVELLQRTRL-E 407 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 R + A SG +L I++D+LD +KIE+G + + P L E + L+ Sbjct: 408 REQQRMVTLAQE---SGRALLHILDDVLDHAKIEAGHLAITPAPTDLRELFDSTVGLLAS 464 Query: 678 YANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE 735 A+E+ + +R +P ++ D ++Q+ N+LSNAI FT G ++ + + + Sbjct: 465 RAHERSLAVRVDVDATVPATVSVDSMRLRQVLSNLLSNAIKFTERGSVRLSAACVEAAAD 524 Query: 736 EV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 V I+RV DTG+G+ PF Q + R GTGLGL +++ + G Sbjct: 525 TVRLIIRVSDTGIGIAPEAQATLFTPFVQADSRTTHRHGGTGLGLAISRQLARLMGGSLD 584 Query: 794 IFSTPAKGTLIEI 806 + STP GT + + Sbjct: 585 MDSTPGVGTTLTL 597 >gi|296268178|ref|YP_003650810.1| GAF sensor hybrid histidine kinase [Thermobispora bispora DSM 43833] gi|296090965|gb|ADG86917.1| GAF sensor hybrid histidine kinase [Thermobispora bispora DSM 43833] Length = 1214 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 129/241 (53%), Gaps = 14/241 (5%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S +KS+FLA +SHE+RTPL +++ ++++ + G L PR +E+A I +G +L ++ Sbjct: 767 SRYKSEFLANMSHELRTPLNSLLVLAKLLADNAEGNL-TPRQVEFAKTIHEAGTALLQLI 825 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700 ND+LD+SK+E+G+M++H + +SL V + A +K + + P+ I D Sbjct: 826 NDILDLSKVEAGRMDIHPQQISLPRLVEYMEATFAPLAEDKELAFTVRLDPSAPQEIYTD 885 Query: 701 LRSVKQIALNILSNAIHFT------------PSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + ++Q+ N+LSNAI FT P+ Q + + + RV DTG+G+ Sbjct: 886 EQRLQQVLRNLLSNAIKFTHEGEVRLEVGRAPADVQYADEALKNTPDMLAFRVIDTGIGI 945 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L+ + F Q + + GTGLGL + + + G+ ++ STP +G+ + Sbjct: 946 APNKLDVIFEAFRQADGTTSRKYGGTGLGLSICRQIARLLGGEIHVASTPGEGSTFTLYL 1005 Query: 809 P 809 P Sbjct: 1006 P 1006 >gi|209525666|ref|ZP_03274203.1| histidine kinase [Arthrospira maxima CS-328] gi|209493835|gb|EDZ94153.1| histidine kinase [Arthrospira maxima CS-328] Length = 522 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 136/257 (52%), Gaps = 9/257 (3%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK-NQRFGPLG 619 +++ +++ +L AK+IA+ + KS+FLA +SHE+RTPL AI+GF++++ NQ P Sbjct: 104 LAQTQEQARQLQQAKEIADAANRAKSEFLANMSHELRTPLNAILGFAQLMSTNQNLAP-E 162 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 ++IE I+RSG +L ++ND+L++S+IE+G L L + + +L A Sbjct: 163 KRQHIE---IINRSGEHLLGLINDILEMSRIEAGGATLQVNAFDLYDFLKSLEDFFKLRA 219 Query: 680 NEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K + LI I I AD + ++Q+ +N+L NAI FT G + + + I Sbjct: 220 TSKNLHLIFERPQGLIRYIKADDKKLRQVLINLLVNAIKFTDEGSVTVRVSHQNQDTSDI 279 Query: 739 LR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 L+ V DTG+G+ + E + F Q EG+GLGL +A+ V G+ + S Sbjct: 280 LKFEVEDTGLGIAPEDCEGLFEAFAQTETGLNA-SEGSGLGLAIAQQFVTLMGGEITVRS 338 Query: 797 TPAKGTLIEIIFPLYDT 813 +G+ P+ T Sbjct: 339 CLNQGSTFSFTIPVQRT 355 >gi|121535984|ref|ZP_01667777.1| integral membrane sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] gi|121305444|gb|EAX46393.1| integral membrane sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] Length = 583 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 76/233 (32%), Positives = 129/233 (55%), Gaps = 7/233 (3%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLV 637 E+ + DF+A VSHE+RTPLT + G+++ +++ G + +P ++ Y + + Sbjct: 353 EQLDKMRRDFVANVSHELRTPLTIMHGYNQALQD---GTITDPALVKKYHRVMGEEIMRL 409 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 ++ DLLD+S++++ + L E VSL E V ++L++ + EK + + A +P I Sbjct: 410 EKLIADLLDLSQLQANGLTLDIEEVSLAEIVDNVVTLLKPRSEEKGVSLAACVAPGVPPI 469 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + Q+AL ++ NA+ FTP GG+I I T EEV L V DTG G+ +L Sbjct: 470 QGDGDRLTQLALILVDNALKFTPPGGRISIDLTVQDGEEV-LTVADTGTGIAPEDLPYIW 528 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F + S+ GTGLGL +A+ +++ + K + S +GT+ I FPL Sbjct: 529 ERFYKGDKSRA--SSGTGLGLAIARQIIELHGAKVDVTSRCGEGTVFTIRFPL 579 >gi|282901163|ref|ZP_06309093.1| Multi-sensor Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] gi|281193937|gb|EFA68904.1| Multi-sensor Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] Length = 968 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 103/362 (28%), Positives = 180/362 (49%), Gaps = 32/362 (8%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-QNTPSVMNHYLTEI 516 E G+A+++ G + NRA+ ++ GY D+L K T + + P + + Sbjct: 627 FENAGSGMALVSLNGYFIRVNRALCQMLGYDSRDLLTKNVTELITGEELPKDFDLAYQFL 686 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL------PFSSCYSLTMHDISEWKQEKNK 570 +EK L K K++ + + + L P + + DISE + E + Sbjct: 687 SGQITNYQVEKSCLH--KSGKIIWVLLNVSLLCDVNGNPLHFIWQI--QDISE-RHEVEQ 741 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L K++F++ VSHE+RTPLTAI G E++ + P+ E I Sbjct: 742 L-------------KNEFVSVVSHEVRTPLTAIKGALEILATGIL--VDEPQEAEQMLKI 786 Query: 631 DRSGN-LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 S + +L +VN++L++ ++SGKM L+ E ++ V +A+ VQ A + I I S Sbjct: 787 AVSNSERLLRLVNNILNLEMLDSGKMRLNLELCDINIMVKQAMETVQPIAQQNSIEISYS 846 Query: 690 FANNIP--RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 A ++P +ILAD ++ Q+ N+LSN++ F+ +G ++ I T ++E+I+ V+D G G Sbjct: 847 -ALDVPNTKILADEETIIQVLTNLLSNSVKFSHAGTKVEIYVT-MGDKEIIVAVKDYGKG 904 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + ++LE + F Q+ S + GTGLGL + K +V + GK ++ S G+ Sbjct: 905 VPPHKLETIFERFEQVDVSDSRQKGGTGLGLAICKNIVQKHQGKIWVESILDSGSTFYFT 964 Query: 808 FP 809 P Sbjct: 965 LP 966 >gi|126009878|gb|ABN64196.1| RcsC [Pectobacterium carotovorum subsp. carotovorum] Length = 951 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 84/260 (32%), Positives = 130/260 (50%), Gaps = 7/260 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 441 VLLDVSARVKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLP 500 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 N + N S +L+L I++D+LD SKIES ++ + + E +S S Sbjct: 501 QDANRLVLAMNN----SSSLLLKIISDILDFSKIESEQLKIEPCEFAPHEVISHITSNYL 556 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +KR+++ N+P + D ++Q+ N+LSNAI FT +G I+ + Sbjct: 557 PLVVKKRLMLYCFIEPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDTG--CIVFEVGCRDG 614 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + VRDTGVG+ E K PF Q + Q +GTGLGL + + +V+ G I Sbjct: 615 YLEFVVRDTGVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITIE 674 Query: 796 STPAKGTLIEIIFPLYDTSH 815 S P G+L + PLY + Sbjct: 675 SEPGLGSLFGVRIPLYKAHY 694 >gi|325263090|ref|ZP_08129825.1| sensor histidine kinase/response regulator [Clostridium sp. D5] gi|324031483|gb|EGB92763.1| sensor histidine kinase/response regulator [Clostridium sp. D5] Length = 675 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 91/237 (38%), Positives = 135/237 (56%), Gaps = 9/237 (3%) Query: 580 KESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 KES+ KS FLA +SHE++TPLT I SE++ ++ FG L N R +Y I S N +L Sbjct: 434 KESNMVKSRFLANISHELKTPLTGSINASELLLDELFGTL-NERQTKYVKNIWLSSNQLL 492 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++ND+LD+SKI +GK+N++ ++E + EAI +V+ +K I + TS + + Sbjct: 493 LLINDILDLSKINAGKLNVNPAVCFVNEVLEEAIGIVKSTTYKKSIELITSVTPDELEVW 552 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYEL 753 AD + +KQ+ N+LSNAI F+ + +S + +N E V V D G+G+ +L Sbjct: 553 ADKQLLKQVLYNLLSNAIKFSNENSTVFVSAGNVNNPENSRTYVRFCVSDQGIGIAKKDL 612 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 E+ F Q NS GTGLGLPL+K V+ GK + S GT E+IF L Sbjct: 613 ERVFVEFEQTDNSYSREYGGTGLGLPLSKKWVELQGGKMELHSELNVGT--EVIFFL 667 >gi|88860288|ref|ZP_01134926.1| putative sensory box histidine kinase/response regulator [Pseudoalteromonas tunicata D2] gi|88817486|gb|EAR27303.1| putative sensory box histidine kinase/response regulator [Pseudoalteromonas tunicata D2] Length = 902 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 93/298 (31%), Positives = 152/298 (51%), Gaps = 28/298 (9%) Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI-------------AEKESSHKSD 587 + I+I +L S S ++H ++E K +LS +I A++ + K+ Sbjct: 213 IAILINQLLNSVKESESLHLVAEDKLHGLQLSLENQIMSRTQELEKAITSAQQANETKTT 272 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHEIRTP+ IIG +++ R L P+ + ++ I S +L I++D+LD Sbjct: 273 FLATMSHEIRTPMNGIIGTIDLL---RHTELSGPQ-VRLSSIIRDSAFSLLGILDDILDF 328 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706 SKIE+GK+ + P+S+ + V E ++ A++ + + NIP +L D V+Q Sbjct: 329 SKIEAGKLKVDLIPLSVQQIVEEVARVMSSIAHKNALELNLFIDPNIPEGLLGDPIRVRQ 388 Query: 707 IALNILSNAIHFTPSG----GQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMK 758 + N+ SNAI FT S G++ I T + V ++ D G GMT +L + + Sbjct: 389 VIYNLCSNAIKFTNSTNDKQGKVSIDVTLSQKTHDFNTVDFKISDNGRGMTKQQLGRIFQ 448 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT--LIEIIFPLYDTS 814 PF Q +S GTGLGL + K++ + G+ + S P G+ LI I F L D + Sbjct: 449 PFSQAEDSITREFGGTGLGLSICKSLTELMYGQIKVTSEPGIGSEFLISIPFTLGDEA 506 >gi|163747505|ref|ZP_02154855.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex HEL-45] gi|161379183|gb|EDQ03602.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex HEL-45] Length = 491 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 128/230 (55%), Gaps = 2/230 (0%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K++F++ +SHE+RTP+T+I G ++ G + P+ + R+ + I+N++ Sbjct: 229 KTEFVSTISHELRTPMTSIKGSLDMACAGVLGDM-TPQMEKVLKIAQRNSARLTSIINEI 287 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+ K E+GK++ EP+ + + +AI L Q +A+ + +R + ++ I D + + Sbjct: 288 LDLQKFEAGKVSFDIEPLEVQTIIEDAIELNQAFASNLGVTLRYAKPSDAAGIATDEKRL 347 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +Q+ N+LSNA F+P+G + + T+ +E+V + V D G+G+ E EK F QI Sbjct: 348 QQVMSNLLSNAAKFSPAGSTVKV-TSVKQDEKVRISVIDEGIGLAESEREKVFDEFSQID 406 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 +S Q GTGLG+ ++K +++A G+ F GT I PL + S Sbjct: 407 SSDQRAVGGTGLGMNISKRIIEALGGQIDYFKNEGPGTTFYIDMPLGNGS 456 >gi|83776228|dbj|BAE66347.1| unnamed protein product [Aspergillus oryzae] Length = 1134 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 85/262 (32%), Positives = 139/262 (53%), Gaps = 24/262 (9%) Query: 560 DISEWKQEKNKL-----------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 ++ E KQ+ NK+ + A++ AE + KS+FLA +SHEIRTP+ IIG ++ Sbjct: 587 EMDELKQKINKMISNLRDSIQRNTAAREAAELANQSKSEFLANMSHEIRTPMNGIIGMTQ 646 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 + + P P E N + GN +L I++D+LDISKIE+ M + P SL + V Sbjct: 647 LALDTDDLP---PPTREMLNVVHNLGNSLLVIIDDILDISKIEANHMKIESVPFSLGQTV 703 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQII 726 +A+ ++ + A+E+ + + T NN R ++ D ++QI LN++ NAI FT + GQI Sbjct: 704 FKALKILAVEASERSLHL-TYHINNSVRDCVIGDAFRLRQIILNLIGNAIKFTET-GQIQ 761 Query: 727 IST------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 ++ H + V DTG+G+ +L+ F Q S + GTGLGL + Sbjct: 762 LTIKEAVPRCHPDKYLLEFSVSDTGIGIDKSKLDLIFDKFQQADGSMTRKFGGTGLGLSI 821 Query: 781 AKAMVDANMGKFYIFSTPAKGT 802 +K +V+ G ++ S G+ Sbjct: 822 SKKLVNLMGGDIWVTSAVGVGS 843 >gi|332704399|ref|ZP_08424487.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554548|gb|EGJ51592.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1202 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 126/223 (56%), Gaps = 10/223 (4%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A+ AE+ + KS+FLA +SHEIRTP+ +IG +E+ + P+ EY + +S Sbjct: 815 ARIEAEQANRAKSEFLANMSHEIRTPMNGVIGLTELA----LMTVEEPKAREYLQMVKKS 870 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +LDI+ND+LD+SKIE+GK+ L +P SL E++ + + + A K + + A + Sbjct: 871 GLTLLDIINDILDLSKIEAGKVMLEKKPFSLRESLEATLKPLDVVAQGKGLKVSLQVAPD 930 Query: 694 IP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVIL--RVRDTGVG 747 +P ++ D ++Q+ N++ NA+ F+ G + + + S+E+ + V D G+G Sbjct: 931 VPDALMGDRGRLRQVLTNLVGNAVKFSHKGWVRVSVGLDDGNVSSEQATISFEVADEGIG 990 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + +L F Q+ +S ++ GTGLGL ++K +V+ G Sbjct: 991 IPADKLSTIFDSFAQVDSSAHVKYGGTGLGLSISKHLVELMGG 1033 >gi|332162345|ref|YP_004298922.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666575|gb|ADZ43219.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860455|emb|CBX70762.1| sensor kinase protein rcsC [Yersinia enterocolitica W22703] Length = 932 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 84/253 (33%), Positives = 131/253 (51%), Gaps = 7/253 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 424 DVSSRVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PHG 482 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 483 VERLVTAMN---NSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLV 539 Query: 680 NEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +KR+ + ++PR+ L D ++Q+ N+L+NAI FT +G II + Sbjct: 540 VKKRLGLYCFIEADVPRLMLGDAVRLQQVISNLLNNAIKFTDTG--CIILQVRVRGYYLE 597 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 RVRDTGVG+ + E+ + PF Q+ Q +GTGLGL + + +V+ G + S Sbjct: 598 FRVRDTGVGINSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDAEVISEL 657 Query: 799 AKGTLIEIIFPLY 811 G++ I PLY Sbjct: 658 GMGSIFAIRIPLY 670 >gi|302805691|ref|XP_002984596.1| hypothetical protein SELMODRAFT_120617 [Selaginella moellendorffii] gi|300147578|gb|EFJ14241.1| hypothetical protein SELMODRAFT_120617 [Selaginella moellendorffii] Length = 468 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 135/250 (54%), Gaps = 17/250 (6%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + +L ++ AE+ S KS+FLA +SHEIRTP+ AIIG + + + Sbjct: 12 ELELANKELQESQAAAEEASRAKSEFLANMSHEIRTPIHAIIGMASLALDTNL----TEE 67 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 E+ + + +S + +L IVN +LD++KIE+G++ L P ++ + +S + ++Q+ A +K Sbjct: 68 QREHLDTVAQSADSLLHIVNTILDLAKIEAGRLELEHVPFNVCDLLSSTMKMLQVSARQK 127 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-----EE 736 + + + +P +++ D ++Q LN++ NAI FT G + H SN EE Sbjct: 128 DLDMSWEVSAEVPQQLIGDAGRLQQCILNLVGNAIKFTQRGS---VFLNHVSNDPQRREE 184 Query: 737 ----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 V+ V+DTG+G++ + ++ K F Q S GTGLGL + + +V G+ Sbjct: 185 EAVCVLFSVKDTGIGISQEKQKEVFKAFSQADTSITRLYGGTGLGLSIVERLVAMMGGRI 244 Query: 793 YIFSTPAKGT 802 ++ S KG+ Sbjct: 245 WLESEAGKGS 254 >gi|159901169|ref|YP_001547416.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159894208|gb|ABX07288.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 893 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 90/358 (25%), Positives = 175/358 (48%), Gaps = 30/358 (8%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +IL++ +DG+ +++ +G ++ N + + G D+L K F F Q TP Sbjct: 545 AILQSIADGVIVLDPDGKVILVNHTATAMLGASEADLLGKSFAEF--QLTPLSGGA---- 598 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574 +L T T T +++L++ +++ S L +HD++E + + A Sbjct: 599 ----ELFATPTATTFYETTSQRILTMNAAPVEREGLQSGEVLVLHDVTE----ERAMDRA 650 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K +DF+A +SHE+RTPLT+I G+++++ GPL + + ++ + I + G Sbjct: 651 K----------TDFIATISHELRTPLTSICGYADLLLRGFVGPLTDEQ-TQFMSTIRQQG 699 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +++++ +++ I+ IE+G M E SLDE + +Q ++K++ + N+ Sbjct: 700 QSMVEVLQNVIVIASIEAGNMEPQIEQHSLDELLPPIAQALQKGFDQKQLKLIIDLPENM 759 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 P I+ D K + +L NA +T +G + + + + V DTG G+ + + E Sbjct: 760 PYIVVDRDHFKIMLTQLLENARRYTQTG--TVTVQAKAVEQRIQIAVIDTGPGIASQDFE 817 Query: 755 KAMKPF--GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + F G + + G GLGL + K +V+ N GK ++ S G+ + FPL Sbjct: 818 RLFERFQRGGEQSGLTSKERGIGLGLAITKQLVEQNNGKIWVESEQGVGSSFIMQFPL 875 >gi|91201123|emb|CAJ74182.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 1110 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 128/238 (53%), Gaps = 16/238 (6%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K F+A SHE+RTPL +IIGFSE++ + FG L + Y N I S +L +VN++ Sbjct: 434 KGRFIANASHELRTPLHSIIGFSEILLQKTFGDLTEKQQ-RYLNTIFGSAKHLLYLVNNI 492 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD++KI++GK + ++ + + E + +++ A+ K I+ T +++ AD Sbjct: 493 LDLAKIDAGKAEISYQTFPVKSVIDEVLVVIRPLADRKMIVPETVVHHDV-YFTADKIKF 551 Query: 705 KQIALNILSNAIHFTPSGGQI------IISTTHT------SNEEVILRVRDTGVGMTNYE 752 KQI N++SNAI FT G + IIS T S E + + V DTG+G+ + Sbjct: 552 KQILYNLISNAIKFTADSGNVGIAIEKIISDKKTFPWVTESQEFLKVSVWDTGIGIKPED 611 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 E+ + F QI +S+ EGTGLGL L K +V+ + G + +G++ + P Sbjct: 612 RERIFEEFEQIDSSKST--EGTGLGLSLTKKLVEIHGGHITVEGIYGQGSVFNVYMPF 667 >gi|307824939|ref|ZP_07655161.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307733986|gb|EFO04841.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 2035 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 134/256 (52%), Gaps = 18/256 (7%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ-RFGP 617 DISE K + A AE+ + +S+F+AR+SHE+RTPL I+G+S+++ + R Sbjct: 1535 RDISERKAVEAAREAALVEAERLARLRSEFMARMSHELRTPLNGILGYSQILLGENRL-- 1592 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 N R N + +SG +L ++ND+LD +KIE+GK L + L + +V + Sbjct: 1593 --NERQHVMVNVMQQSGEHLLSLINDILDFAKIEAGKQELSLSDIHLPSFLHNLADIVSV 1650 Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-- 734 A +K++ A +P I AD +KQ+ LN+LSNA+ ++ GQI + T Sbjct: 1651 KAEQKQLAFICDIAAAVPEGIRADDMRLKQVLLNLLSNAVKYSEQ-GQISLRVTVLKKPF 1709 Query: 735 --------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + ++D+G+G+ +LE KPF Q + Q G GTGLGL +++ +V Sbjct: 1710 SEGAPVELGRLRFEIQDSGIGIEAGQLESIFKPFEQAADI-QYSGGGTGLGLVISRELVR 1768 Query: 787 ANMGKFYIFSTPAKGT 802 + ++ S +G+ Sbjct: 1769 LMGSEIFVSSRVGEGS 1784 >gi|261822453|ref|YP_003260559.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Pectobacterium wasabiae WPP163] gi|261606466|gb|ACX88952.1| integral membrane sensor hybrid histidine kinase [Pectobacterium wasabiae WPP163] Length = 951 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 84/260 (32%), Positives = 130/260 (50%), Gaps = 7/260 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 441 VLLDVSARVKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLP 500 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 N + N S +L+L I++D+LD SKIES ++ + + E +S S Sbjct: 501 QDANRLVLAMNN----SSSLLLKIISDILDFSKIESEQLKIEPCEFAPHEVISHITSNYL 556 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +KR+++ N+P + D ++Q+ N+LSNAI FT +G I+ + Sbjct: 557 PLVVKKRLMLYCFIEPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDTG--CIVFEVGCRDG 614 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + VRDTGVG+ E K PF Q + Q +GTGLGL + + +V+ G I Sbjct: 615 YLEFVVRDTGVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITIE 674 Query: 796 STPAKGTLIEIIFPLYDTSH 815 S P G+L + PLY + Sbjct: 675 SEPGLGSLFGVRIPLYKAHY 694 >gi|83312977|ref|YP_423241.1| sensor protein gacS [Magnetospirillum magneticum AMB-1] gi|82947818|dbj|BAE52682.1| Sensor protein gacS [Magnetospirillum magneticum AMB-1] Length = 1177 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 140/243 (57%), Gaps = 12/243 (4%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ S +KS+FLA +SHE+RTPL +++ + + + G + + + +E A I SG +L Sbjct: 512 EQASRYKSEFLANMSHELRTPLNSVLILARDLADNDTGNMSDDQ-VESARVIHESGTHLL 570 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL----YANEKRILIRTSFANNI 694 ++ND+LD+SK+E+GKM L +PV++ A+++ + +++ A +K + + ++ Sbjct: 571 ALINDVLDLSKVEAGKMTL--DPVTI--AIADLVQVIRGRFAPVATDKGLGFQVEVDPDL 626 Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYE 752 PR L AD ++QIA N++SNAI FT GG + + + T + V+ L V DTG+G+ + Sbjct: 627 PRSLKADRGKIEQIANNLVSNAIKFTSEGG-VTVRLSLTGDGHVLALSVADTGIGIAPQD 685 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 ++ F Q + + GTGLGL +++ + G + + KG++ ++ PL Sbjct: 686 RQRVFAAFEQADSGTSRQFGGTGLGLTISRKLARLMGGDITLDANGDKGSVFTLLLPLAG 745 Query: 813 TSH 815 T+ Sbjct: 746 TTQ 748 >gi|146297038|ref|YP_001180809.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410614|gb|ABP67618.1| PAS/PAC sensor signal transduction histidine kinase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 565 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 130/220 (59%), Gaps = 8/220 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVND 643 +SDF+A VSHE++TPLT+I GF E +K+ G + + ++ N I+ ++ ++ND Sbjct: 346 RSDFVANVSHELKTPLTSIKGFVETLKD---GAIEDKEIAGKFLNIIEVEVERLVRLIND 402 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLR 702 LL +S+IE+ K+ + + V++ E + E I L++ A K I ++ + + +I D Sbjct: 403 LLYLSEIENAKIQVTEDDVNVKEVLEECIELLRFKAESKNIKMQLRLDDKLKMKIHKDW- 461 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 +KQI +N++ NAI + G++II +E++ +RV+DTG+G+ E+E+ + F + Sbjct: 462 -LKQIFINLIDNAIVYNRENGEVIIEVERL-DEKIAIRVKDTGIGIPQNEIERIFERFYR 519 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + + + GTGLGL + K +V+ GK Y+ S KG+ Sbjct: 520 VDKGRSRKLGGTGLGLSIVKHIVELYNGKIYVQSEVGKGS 559 >gi|134292639|ref|YP_001116375.1| integral membrane sensor hybrid histidine kinase [Burkholderia vietnamiensis G4] gi|134135796|gb|ABO56910.1| integral membrane sensor hybrid histidine kinase [Burkholderia vietnamiensis G4] Length = 1129 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 8/278 (2%) Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 L+L+++ T+ D++ K ++KL A+ AE + KS FLA +SHEIRT Sbjct: 479 LALQVVRTMFHGVDVLLCTLTDVTARKLTEDKLKEARTAAEDANKAKSTFLATMSHEIRT 538 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PL AI+G E++ + PL R ++ + S + +L +ND+LD+SK ES +M L Sbjct: 539 PLNAIVGNLELMARAQL-PLAERRRLQ---TVMSSSDALLHTINDVLDLSKAESNQMALE 594 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIH 717 P L + E ++ + A+ K + + A + + D V+QI N++SNAI Sbjct: 595 AVPFDLRAVLHEVAAIFRALADAKHLRLECVIAAGLGDGYVGDPARVRQIVSNLVSNAIK 654 Query: 718 FTPSGGQIIISTTHTS--NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 FT G++ + + V + VRDTG+G+ + + Q S R GTG Sbjct: 655 FTEH-GRVTVEALPAAVPGRGVEIVVRDTGIGIEPDSMPTLFDVYVQTDASIYRRFGGTG 713 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 LGLPL + + G + S P G + PL D Sbjct: 714 LGLPLCRRLARLMGGDVTVESRPGAGAVFTASLPLADA 751 >gi|29349960|ref|NP_813463.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29341871|gb|AAO79657.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 635 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 88/266 (33%), Positives = 132/266 (49%), Gaps = 20/266 (7%) Query: 549 PFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 PF L + HDI + + +L AK+ AE KS FLA +SHEIRTPL AI+GFS Sbjct: 245 PFEGNTVLALIHDIGDRIRRSEELIEAKRRAEDADRMKSVFLANMSHEIRTPLNAIVGFS 304 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 E++ EY I ++ NL+L ++ND+LD+S+IESGK +HF+ V + Sbjct: 305 EIMALTE----NEEEKHEYLEIIQKNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGL 360 Query: 668 VSEAISLVQLY----ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 V E + QL + K + + F + R V Q+ N LSNAI T +G Sbjct: 361 VDEVEKVHQLKMKLNVDLKVVRPQGEFWTSTDR-----NRVMQVLFNFLSNAIKNTETGS 415 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 I + + L V DTG G+ +L + F ++ + Q GTGLGL + K+ Sbjct: 416 --ITLGLKQEGDWLKLFVSDTGCGIPEEKLPQIFTRFEKLNDFVQ----GTGLGLSICKS 469 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809 +V+ G+ + S +G+ + P Sbjct: 470 IVERLGGRIEVSSELGQGSTFALYLP 495 >gi|317159482|ref|XP_001827480.2| two-component osmosensing histidine kinase (Bos1) [Aspergillus oryzae RIB40] Length = 1141 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 85/262 (32%), Positives = 139/262 (53%), Gaps = 24/262 (9%) Query: 560 DISEWKQEKNKL-----------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 ++ E KQ+ NK+ + A++ AE + KS+FLA +SHEIRTP+ IIG ++ Sbjct: 594 EMDELKQKINKMISNLRDSIQRNTAAREAAELANQSKSEFLANMSHEIRTPMNGIIGMTQ 653 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 + + P P E N + GN +L I++D+LDISKIE+ M + P SL + V Sbjct: 654 LALDTDDLP---PPTREMLNVVHNLGNSLLVIIDDILDISKIEANHMKIESVPFSLGQTV 710 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQII 726 +A+ ++ + A+E+ + + T NN R ++ D ++QI LN++ NAI FT + GQI Sbjct: 711 FKALKILAVEASERSLHL-TYHINNSVRDCVIGDAFRLRQIILNLIGNAIKFTET-GQIQ 768 Query: 727 IST------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 ++ H + V DTG+G+ +L+ F Q S + GTGLGL + Sbjct: 769 LTIKEAVPRCHPDKYLLEFSVSDTGIGIDKSKLDLIFDKFQQADGSMTRKFGGTGLGLSI 828 Query: 781 AKAMVDANMGKFYIFSTPAKGT 802 +K +V+ G ++ S G+ Sbjct: 829 SKKLVNLMGGDIWVTSAVGVGS 850 >gi|145589989|ref|YP_001156586.1| histidine kinase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048395|gb|ABP35022.1| amino acid-binding domain sensor hybrid histidine kinase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 806 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 84/239 (35%), Positives = 132/239 (55%), Gaps = 14/239 (5%) Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHEIRTP+ AI+G E++ N P R ++ A+ S +L I+N +LD+ Sbjct: 312 FLATMSHEIRTPMNAILGVQELLLNSPQFPNREKRLLKSAH---ASAESLLGILNQVLDL 368 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQ 706 SKIE+GK+ L+ EP L+ V + + A + +++ TS I +L D ++Q Sbjct: 369 SKIEAGKLTLNLEPCCLNNIVDDIHAGYSAVAMKHDLVLITSKDAAIAEVLMMDALRLRQ 428 Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQ 762 I N++SNAI FT G+I S + +++ + R+ DTGVGM + E+E A++ F Q Sbjct: 429 ILQNLISNAIKFTKH-GEIYFSISVLADDHAGQLIEFRIIDTGVGMDSEEIELALQAFEQ 487 Query: 763 IP-NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE--IIFPLYDTSHPHD 818 +P NS+Q GTGLGL + +V + + Y S P G+ I + FP + P + Sbjct: 488 VPGNSEQ--QNGTGLGLTITNHLVSSMNSQLYFESAPGFGSNIHFCVAFPRTSIAVPQN 544 >gi|28900955|ref|NP_800610.1| putative sensor histidine kinase [Vibrio parahaemolyticus RIMD 2210633] gi|260366168|ref|ZP_05778628.1| putative lipoprotein [Vibrio parahaemolyticus K5030] gi|260879810|ref|ZP_05892165.1| putative sensor histidine kinase [Vibrio parahaemolyticus AN-5034] gi|260894484|ref|ZP_05902980.1| putative sensor histidine kinase [Vibrio parahaemolyticus Peru-466] gi|28809401|dbj|BAC62443.1| putative sensor histidine kinase [Vibrio parahaemolyticus RIMD 2210633] gi|308086387|gb|EFO36082.1| putative sensor histidine kinase [Vibrio parahaemolyticus Peru-466] gi|308092066|gb|EFO41761.1| putative sensor histidine kinase [Vibrio parahaemolyticus AN-5034] gi|308114882|gb|EFO52422.1| putative lipoprotein [Vibrio parahaemolyticus K5030] Length = 785 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 130/254 (51%), Gaps = 8/254 (3%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 MH++ KQ ++L AE+ + KS FLA +SHE+RTP+ ++G S++I + P Sbjct: 246 MHNL---KQLNSELEAETDKAERAAKAKSSFLAAMSHELRTPMNGVLGISQLIAEETKEP 302 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + E+ I SG ++ I+ND+LD SK+E K+ L P L++ ++ S +Q Sbjct: 303 VTK----EHIKVILDSGQHLMTILNDILDFSKVEENKLELEKAPFHLEQVLTPVCSAIQP 358 Query: 678 YANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 +EK I LI + N D ++QI N+ NA+ FT G +I + ++ ++ Sbjct: 359 LIDEKSIDLIVENDVPNNTEFTGDCARLRQILFNLAGNAVKFTNEGHVLIRTELNSEDKH 418 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +++ V DTG+G+ + + F Q +S R GTGLGL + K + + G + S Sbjct: 419 LLIIVSDTGIGIAPDKQGRVFNSFEQADSSTTRRFGGTGLGLAIVKKLTELMGGSITLKS 478 Query: 797 TPAKGTLIEIIFPL 810 GT + P+ Sbjct: 479 VEGVGTQFIVTLPI 492 >gi|320160495|ref|YP_004173719.1| putative two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319994348|dbj|BAJ63119.1| putative two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 1095 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 133/227 (58%), Gaps = 6/227 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KSDF+A VSH++R+PLT + G++ ++ Q G L N + Y I + +VN+L Sbjct: 864 KSDFVATVSHDLRSPLTLMKGYTTML--QMVGEL-NEQQKAYVQKIISGVENMSRLVNNL 920 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+ +IE+G + L E V + + V E ++ +QL A +K+I + + + P I+ R++ Sbjct: 921 LDLGRIEAG-IGLQIEKVMVSQVVDEVLNALQLQATQKQIELEKEWQSTAPVIVEGDRAL 979 Query: 705 KQIAL-NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 Q AL N++ NAI +TPSGG++ I S E ++L+V DTG+G+ +L + + F + Sbjct: 980 LQQALYNLVENAIKYTPSGGKVSIRLEERS-ESLVLKVVDTGIGIAPLDLPRLFEKFYRS 1038 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + G+GLGL + K++V+ + G+ ++ S KG+ + PL Sbjct: 1039 GRRESYQQRGSGLGLAIVKSIVERHHGRVWVESQLGKGSTFSVELPL 1085 >gi|196040901|ref|ZP_03108199.1| sensory box histidine kinase PhoR [Bacillus cereus NVH0597-99] gi|196028355|gb|EDX66964.1| sensory box histidine kinase PhoR [Bacillus cereus NVH0597-99] Length = 587 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 100/376 (26%), Positives = 182/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ +L++ Sbjct: 240 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEE--------YLDRLYYE 291 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 +H TEI+ L +E+I + K K + L + I++ F Sbjct: 292 SFHH--TEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 344 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 345 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 388 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L V + + + Sbjct: 389 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHM 447 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+GG + + Sbjct: 448 VLDNKAGEKEISLQVNTLKRVS-VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDK 506 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 507 YNAYI-KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 565 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 566 VDSEVGEGTTFTVVLP 581 >gi|21243756|ref|NP_643338.1| histidine kinase-response regulator hybrid protein [Xanthomonas axonopodis pv. citri str. 306] gi|21109344|gb|AAM37874.1| histidine kinase-response regulator hybrid protein [Xanthomonas axonopodis pv. citri str. 306] Length = 1189 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 127/241 (52%), Gaps = 8/241 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S K+ FLA + HE+RTP+T ++G SE++ + + Y I R Sbjct: 812 HKQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTSL----DIKQRSYTESIRR 867 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--RILIRTSF 690 +G +L +VND LD+++IESG++ L EP S+ + V+E +L+ A E+ R + Sbjct: 868 AGAHLLRLVNDALDLARIESGRLELDVEPFSVRQLVAEVGALMAPLAQERGLRFSLEIGL 927 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 +I D ++QI LN+L+NAI FT G + TT S + + V DTG G+ Sbjct: 928 LGDIT-ASGDCTRIRQILLNLLNNAIKFTERGVVGLKLTTLGSYQGLRFEVADTGPGINA 986 Query: 751 YELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + + F Q ++ R G+GLGL + + + A G+ + S GT + P Sbjct: 987 EQKARLFQRFEQGDGARTTSRYGGSGLGLAICQELAIAMGGQIEVISRLGAGTRFVVDLP 1046 Query: 810 L 810 L Sbjct: 1047 L 1047 >gi|30264658|ref|NP_847035.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Ames] gi|47530128|ref|YP_021477.1| sensory box histidine kinase PhoR [Bacillus anthracis str. 'Ames Ancestor'] gi|65321955|ref|ZP_00394914.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis str. A2012] gi|165869708|ref|ZP_02214366.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0488] gi|167633978|ref|ZP_02392301.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0442] gi|167638013|ref|ZP_02396291.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0193] gi|170685740|ref|ZP_02876963.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0465] gi|170705359|ref|ZP_02895823.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0389] gi|177651147|ref|ZP_02933978.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0174] gi|190569089|ref|ZP_03021989.1| sensory box histidine kinase PhoR [Bacillus anthracis Tsiankovskii-I] gi|196032783|ref|ZP_03100196.1| sensory box histidine kinase PhoR [Bacillus cereus W] gi|218905815|ref|YP_002453649.1| sensory box histidine kinase PhoR [Bacillus cereus AH820] gi|227817372|ref|YP_002817381.1| sensory box histidine kinase PhoR [Bacillus anthracis str. CDC 684] gi|229600397|ref|YP_002868867.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0248] gi|254687395|ref|ZP_05151251.1| sensory box histidine kinase PhoR [Bacillus anthracis str. CNEVA-9066] gi|254724958|ref|ZP_05186741.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A1055] gi|254736695|ref|ZP_05194401.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Western North America USA6153] gi|254741732|ref|ZP_05199419.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Kruger B] gi|254754670|ref|ZP_05206705.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Vollum] gi|254757502|ref|ZP_05209529.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Australia 94] gi|301056093|ref|YP_003794304.1| phosphate regulon sensor protein [Bacillus anthracis CI] gi|30259333|gb|AAP28521.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Ames] gi|47505276|gb|AAT33952.1| sensory box histidine kinase PhoR [Bacillus anthracis str. 'Ames Ancestor'] gi|164714537|gb|EDR20056.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0488] gi|167513830|gb|EDR89198.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0193] gi|167530779|gb|EDR93481.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0442] gi|170129484|gb|EDS98347.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0389] gi|170670204|gb|EDT20944.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0465] gi|172082973|gb|EDT68035.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0174] gi|190559871|gb|EDV13856.1| sensory box histidine kinase PhoR [Bacillus anthracis Tsiankovskii-I] gi|195994212|gb|EDX58167.1| sensory box histidine kinase PhoR [Bacillus cereus W] gi|218540120|gb|ACK92518.1| sensory box histidine kinase PhoR [Bacillus cereus AH820] gi|227004296|gb|ACP14039.1| sensory box histidine kinase PhoR [Bacillus anthracis str. CDC 684] gi|229264805|gb|ACQ46442.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0248] gi|300378262|gb|ADK07166.1| phosphate regulon sensor protein [Bacillus cereus biovar anthracis str. CI] Length = 587 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 100/376 (26%), Positives = 182/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ +L++ Sbjct: 240 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEE--------YLDRLYYE 291 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 +H TEI+ L +E+I + K K + L + I++ F Sbjct: 292 SFHH--TEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 344 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 345 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 388 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L V + + + Sbjct: 389 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHM 447 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+GG + + Sbjct: 448 VLDNKAGEKEISLQVNTLKRVS-VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDK 506 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 507 YNAYI-KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 565 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 566 VDSEVGEGTTFTVVLP 581 >gi|254227606|ref|ZP_04921037.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262395654|ref|YP_003287507.1| sensor histidine kinase [Vibrio sp. Ex25] gi|151939648|gb|EDN58475.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262339248|gb|ACY53042.1| sensor histidine kinase [Vibrio sp. Ex25] Length = 785 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 80/284 (28%), Positives = 140/284 (49%), Gaps = 16/284 (5%) Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 +++ +++ + S Y M+++ KQ ++ A+ AE+ + KS FLA +SHE+R Sbjct: 228 FIAVMLLVSAFLYQSQYR--MYNL---KQLNLEIEEARNKAERAAKAKSSFLAAMSHELR 282 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ ++G S++I + P EY I SG ++ I+ND+LD SK+E K+ Sbjct: 283 TPMNGVLGLSQMIAEET----NEPTTKEYVKVILDSGQHLMTILNDILDFSKVEENKLEF 338 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL---ADLRSVKQIALNILSN 714 +LD+ +S S ++ +EK I + N +P + D ++QI N+ N Sbjct: 339 EQAKFNLDQVISPVCSAIKPLIDEKNIELIVE--NEVPEYVEFTGDCARLRQILFNLAGN 396 Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 A+ FT G +I + N +++ V DTG+G+ + E F Q +S + GT Sbjct: 397 AVKFTSEGHVLIRTELDKVNHCLVMIVSDTGIGIALDKQEHVFNSFEQADSSTTRKFGGT 456 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGT--LIEIIFPLYDTSHP 816 GLGL + K + GK + S G+ ++E+ P + P Sbjct: 457 GLGLAIVKKLTGLMDGKITLKSVEGVGSQFIVELPIPWVECELP 500 >gi|253578668|ref|ZP_04855939.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849611|gb|EES77570.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 640 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 80/257 (31%), Positives = 142/257 (55%), Gaps = 13/257 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E +++K L A + A+ + KS FL +SH+IRTP+ AIIGF+ + +Q + + Sbjct: 240 AEEQKQKQLLMTAAEEADAANKAKSAFLLSISHDIRTPMNAIIGFTNIALHQN--TVSDI 297 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS--EAISLVQLYA 679 + + +S N +L ++ND+LD ++IESGK+ + EP+ + + +AI LY Sbjct: 298 H--DSLEKVQKSSNHLLSLLNDVLDFTRIESGKVTISPEPMDITQLTDNVQAIMNGLLYN 355 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII--ISTTHTSNEEV 737 + + + + N P +LAD+ ++++ +N+L NA+ FT GG+I IS+ ++E+ Sbjct: 356 RDLKFEVHREISKN-PYVLADVVRIREVLVNLLGNAVKFTKDGGKITLDISSYPGADEKH 414 Query: 738 ILR---VRDTGVGMTNYELEKAMKPFGQIPNSQ-QIRGEGTGLGLPLAKAMVDANMGKFY 793 I+ VRD G+GM+ +K PF Q ++ + + +GTGLG+ + K VD G Sbjct: 415 IITRYVVRDNGIGMSEEFQKKLFDPFSQEDDANARTQYKGTGLGMAITKKYVDMMGGSIA 474 Query: 794 IFSTPAKGTLIEIIFPL 810 + S G+ + PL Sbjct: 475 VESKKGVGSTFTVEIPL 491 >gi|296444720|ref|ZP_06886683.1| multi-sensor hybrid histidine kinase [Methylosinus trichosporium OB3b] gi|296257668|gb|EFH04732.1| multi-sensor hybrid histidine kinase [Methylosinus trichosporium OB3b] Length = 1148 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 134/254 (52%), Gaps = 13/254 (5%) Query: 564 WKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + + L+ A++ AE++ S +KS FLA +SHE+RTPL +I+ ++ + + Sbjct: 488 LEAQAEDLAAARRDAERQVEELAEASRYKSQFLANMSHELRTPLNSILILADTLADD--- 544 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + E A I SG+ +L ++ND+LD+SKIE+G++ L E V +D+A++ Sbjct: 545 DELDAEHTESAKVIGESGHHLLALINDILDLSKIEAGRLELVEESVRIDDALASIARTFA 604 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A+ K + + A P ++ AD R + Q+ LN++ NA+ FT G + T + Sbjct: 605 APADRKGVALTVETAPGAPSVIRADGRRLIQVLLNLVGNAVKFTDRGE--VRVTASPMDG 662 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V V DTGVG+ ++E F Q+ + R GTGLGL +++ +V G+ + Sbjct: 663 GVRFSVSDTGVGIAPNQIESVFTAFQQVDGTTSRRYGGTGLGLTISRDLVTLMGGRIEVQ 722 Query: 796 STPAKGTLIEIIFP 809 S +G++ I P Sbjct: 723 SILGQGSVFSFILP 736 >gi|296418541|ref|XP_002838889.1| hypothetical protein [Tuber melanosporum Mel28] gi|295634872|emb|CAZ83080.1| unnamed protein product [Tuber melanosporum] Length = 1966 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 80/260 (30%), Positives = 133/260 (51%), Gaps = 16/260 (6%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 F +C + H + E +L AK A+K K+ FLA +SHEIRTPL I G Sbjct: 1264 FGTCTDINNHKLLE-----QRLKEAKDAAQKTMESKTRFLANMSHEIRTPLIGISGMVNF 1318 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + PL N ++Y + I +S + +L ++ND+LD+SK+E+G M ++ E ++ + Sbjct: 1319 LLDT---PL-NGEQLDYCHTISQSSDGLLSVINDILDLSKVEAGMMRMNPEWFRINTLIE 1374 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQI--- 725 +A L+ A K + + +++P ++ D ++Q+ LN++ NAI FT G Sbjct: 1375 DANELLSAMAVAKDLELSFIVEDDVPPVVCGDRVRLRQVMLNVIGNAIKFTTKGEVFSRW 1434 Query: 726 -IISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 +I EV+L+ DTG G + E KPF QI S G+GLGL +++ Sbjct: 1435 SVIKDAQVGEGEVMLQFECHDTGPGFDRKDEELMFKPFSQIDGSSTREHGGSGLGLVISR 1494 Query: 783 AMVDANMGKFYIFSTPAKGT 802 +V+ + G+ S KG+ Sbjct: 1495 QLVELHGGRMTAKSQKGKGS 1514 >gi|221210070|ref|ZP_03583051.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans CGD1] gi|221170758|gb|EEE03224.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans CGD1] Length = 688 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 117/237 (49%), Gaps = 6/237 (2%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A+ A+ + K + LA VSHE+RTPL I G+ EV+++ G + + IDRS Sbjct: 301 ARAQADTSNRLKDELLATVSHELRTPLNVIYGWVEVLRSVD----GQGFAQQAVDAIDRS 356 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 + +V DLLD S + +GK+ L PV + V +A A+ K I + T A Sbjct: 357 ARSLARMVGDLLDASSLATGKLRLERTPVDVARVVHDAAREFGAPAHAKGITLVTEGAGT 416 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 I AD + Q+ N+LSNAI FTPSGG+I++S + V L V DTG GM L Sbjct: 417 ACVISADAERLHQVLSNLLSNAIKFTPSGGRIVVSLARV-DAHVSLSVADTGQGMAPEAL 475 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809 PF + N+ G GLGL + + + + + G S P +G + + P Sbjct: 476 PHLFDPFNRPANAPASPQRGLGLGLSIVRNIAELHGGSVEAASEGPGRGLTVTVTLP 532 >gi|153812168|ref|ZP_01964836.1| hypothetical protein RUMOBE_02565 [Ruminococcus obeum ATCC 29174] gi|149831823|gb|EDM86909.1| hypothetical protein RUMOBE_02565 [Ruminococcus obeum ATCC 29174] Length = 747 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 133/256 (51%), Gaps = 17/256 (6%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN-PRY 623 K+ KN A + AE + K+DFL+ +SH+IRTP+ AIIG + +I++ GN + Sbjct: 333 KKAKNVAKEALQTAENANKAKTDFLSNMSHDIRTPMNAIIGITSLIRHDA----GNKAKV 388 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE--AISLVQLYANE 681 IEYA+ ID S +L I+ND+LD+SKIE+GK + S+ + V E I Q+Y + Sbjct: 389 IEYADKIDSSSQHLLGIINDVLDMSKIEAGKTVFKYSDFSILDLVQELDTIFHTQIYEKQ 448 Query: 682 KRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI- 738 + + I NI + D + QI N+LSNA+ +T GG+I + + Sbjct: 449 QTLTI---IKENIQHEWVNGDQVHLMQIFSNLLSNAVKYTQEGGKIQFFVEECETKSSVY 505 Query: 739 ----LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V D G+GM+ + F + +S + +GTGLG+ + K +V+A G + Sbjct: 506 AKYRFLVSDNGMGMSADFKDTIFDAFTRAESSLTNKIQGTGLGMAITKNLVEAMGGTIDV 565 Query: 795 FSTPAKGTLIEIIFPL 810 S +G+ E++ L Sbjct: 566 ESELGQGSCFEVLLDL 581 >gi|325106876|ref|YP_004267944.1| integral membrane sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324967144|gb|ADY57922.1| integral membrane sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 556 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 124/227 (54%), Gaps = 3/227 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ S KS+FLA +SHEIRTP+TAIIG +E++ ++ I R+ + +L Sbjct: 156 KQASQAKSEFLANMSHEIRTPMTAIIGNAELLYELGDLERAPAERLDAIQAIKRNSSHLL 215 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-I 697 D++ND+LD+SKIE+GK++ + + V E + L+ + A K++++ + +P I Sbjct: 216 DVINDILDLSKIEAGKLSHQLDRHDPQQIVQEVLDLLSVRAEAKQLVLSSRVEGLVPETI 275 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEVILRVRDTGVGMTNYELEK 755 L D ++QI LN++ NAI FT SG ++ T ++ + V DTG+G+ + Sbjct: 276 LTDDTRLRQILLNVVGNAIRFTKSGSVKVVMRFRETTQRNQLEMEVIDTGIGIDQETQNR 335 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +PF Q S + GTGLGL +++ + G + S P G+ Sbjct: 336 LFEPFTQADTSTTRQFGGTGLGLAISRRLARTLGGDLTLESEPGIGS 382 >gi|300867078|ref|ZP_07111745.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300334909|emb|CBN56911.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 1214 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 83/286 (29%), Positives = 142/286 (49%), Gaps = 25/286 (8%) Query: 547 KLPFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 K P S +L + D++E + +L+ + + K +FLA +SHE++TPLTA++G Sbjct: 380 KQPLSETLTLVLAQDVTEEQLVAKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLG 439 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 S ++K++ G L N R YA I +SG ++ +VND+LD++++E+G+M L EPV + Sbjct: 440 LSSLLKDRAIGEL-NDRQARYAKLIHQSGRHLMTVVNDILDLTRMETGQMELIVEPVQIA 498 Query: 666 EAVSEAISLVQLYANE--KRILIR--------TSFANNIP------------RILADLRS 703 A +L + K R TS ++ P I+AD Sbjct: 499 AVCDRAFEGAKLLQQQEDKPTAARDDPTNRDSTSGKSDSPIDFTLEIESGLAHIVADELR 558 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 ++Q+ +N+LSNA+ FT G I + H + V DTG+G+ + + F Q+ Sbjct: 559 LRQMLVNLLSNALKFTAPGAAIGLKVNHWEG-WIAFTVWDTGIGIPADKQHLIFQKFQQL 617 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + R +GTGLGL L + + + G S+ +G+ ++ P Sbjct: 618 ESPLTRRFQGTGLGLVLTQRLARLHGGDVSFISSEGQGSQFTLLLP 663 >gi|171061038|ref|YP_001793387.1| histidine kinase [Leptothrix cholodnii SP-6] gi|170778483|gb|ACB36622.1| histidine kinase [Leptothrix cholodnii SP-6] Length = 589 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 129/234 (55%), Gaps = 7/234 (2%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A+ + K++FLA +SHE+RTPLT+I GF+E+++ + + P++ + A I R+ + Sbjct: 358 AQSANHAKTEFLAAISHELRTPLTSIRGFAELMEKR----IEQPKFKDQAGMIRRAAEHL 413 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696 ++ +LD +KIE+G M + PV++ V + A EK + +R A+++P Sbjct: 414 NALLTQILDFAKIEAGAMRVGATPVAIRPLVRGTADFFAVSAAEKGLELRVQIADDVPET 473 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 +L D +KQ+ N+LSNA+ FT +GG + I + ++ L V DTG G+ + E Sbjct: 474 LLTDELRLKQVLNNLLSNAMKFT-AGGHVAIEVERDAT-QLRLHVVDTGPGIPAEQHELI 531 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F Q + + GTGLGL L++++ + G + STP +G + PL Sbjct: 532 FERFRQADSQVAHQHGGTGLGLALSRSLAELMGGTLGVTSTPGEGARFTLTLPL 585 >gi|119357937|ref|YP_912581.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM 266] gi|119355286|gb|ABL66157.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM 266] Length = 985 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 125/232 (53%), Gaps = 8/232 (3%) Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 + A K + KS FLA +SHE+RTP+ +IG S+++ + +P +Y I SG Sbjct: 319 RAASKANEAKSQFLANMSHEVRTPMNGVIGMSDLLLDTSL----DPEQRKYVETIISSGK 374 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L I+ND+LD SKIE+ +++L L E + + ++ L A +K + + + +P Sbjct: 375 NLLSIINDILDFSKIEANRLDLDVVDFDLLELLEDVCGILGLQAQQKGLELTLVTGSFLP 434 Query: 696 RIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVILR--VRDTGVGMTNY 751 R L D ++QI +N++ NA+ FT SG ++ + + +V +R VRDTG+G+ Sbjct: 435 RFLRGDQARIRQILVNLVGNAVKFTHSGEVVVCAMAQEERDSQVTIRLLVRDTGIGIPRE 494 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 ++ +PF Q S + + GTGLGL ++ + + ST +G++ Sbjct: 495 MMKAVFEPFIQADGSTRRKYGGTGLGLAISNQLAKKMGSTIILESTNGEGSV 546 >gi|330501096|ref|YP_004377965.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] gi|328915382|gb|AEB56213.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] Length = 1160 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 127/232 (54%), Gaps = 3/232 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ S +KS+FLA +SHE+RTPL + + ++++ G L + + +++A I +GN +L Sbjct: 482 QRASRYKSEFLANMSHELRTPLNSSLILAKLLAENGKGNLDDEQ-VKFAESIYSAGNDLL 540 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++ND+LDI+K+E+GK+ + E L + + A E+ + + +P++L Sbjct: 541 NLINDILDIAKVEAGKLEVRPERTPLASMLESLRDVFVPLAGERGLSFQIEEQRELPQVL 600 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + +QI N+LSNA FT GG + +S + + + VRDTG+G+ + E Sbjct: 601 FTDRQRAEQILRNLLSNAFKFTDRGG-VTLSVSRQDDHYLAFAVRDTGIGIAADQQEAIF 659 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q + R GTGLGL +++ + G + S P +G+ ++ P Sbjct: 660 EAFRQADGTTNRRYSGTGLGLSISRDLAGLLGGSITVSSVPGEGSTFTLLLP 711 >gi|318606418|emb|CBY27916.1| two-component sensor protein RcsC [Yersinia enterocolitica subsp. palearctica Y11] Length = 955 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 84/253 (33%), Positives = 130/253 (51%), Gaps = 7/253 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 447 DVSSRVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PHG 505 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 506 VERLVTAMN---NSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLV 562 Query: 680 NEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +KR + ++PR+ L D ++Q+ N+L+NAI FT +G II + Sbjct: 563 VKKRFGLYCFIEADVPRLMLGDAVRLQQVISNLLNNAIKFTDTG--CIILQVRVRGYYLE 620 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 RVRDTGVG+ + E+ + PF Q+ Q +GTGLGL + + +V+ G + S Sbjct: 621 FRVRDTGVGINSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISEL 680 Query: 799 AKGTLIEIIFPLY 811 G++ I PLY Sbjct: 681 GMGSIFAIRIPLY 693 >gi|149908193|ref|ZP_01896857.1| hypothetical protein PE36_01767 [Moritella sp. PE36] gi|149808735|gb|EDM68668.1| hypothetical protein PE36_01767 [Moritella sp. PE36] Length = 742 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 128/245 (52%), Gaps = 8/245 (3%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 ++ KQ ++ K A K + KS FLA +SHEIRTPL IIG +E++K+ P+ Sbjct: 235 TQLKQNIATITQEKDNANKANRAKSTFLANMSHEIRTPLNGIIGMAEILKDSPLSPIQK- 293 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 +Y ID S +L ++ND+LD+SKIESG + + ++ E + + SL+ + A E Sbjct: 294 ---DYLMTIDSSSQTLLMLINDVLDLSKIESGNLVISPHTSNVKEVMFDTASLIAVKAQE 350 Query: 682 KRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-- 738 K I + +P ++ D ++Q+ +N+ SNA+ FT G + + + + I Sbjct: 351 KNIELDIQIDPELPELVKLDEHKLRQVLMNLASNAVKFTAKGKITLTLQSKVVDADHIAL 410 Query: 739 -LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V+DTG+G+ + + K + F Q N+ GTGLGL ++ +V G I S Sbjct: 411 SFSVKDTGIGIESGKHSKIFEAFQQEDNNTTRHFGGTGLGLSISAKIVSLMGGYIAITSI 470 Query: 798 PAKGT 802 +G+ Sbjct: 471 KGQGS 475 >gi|283850337|ref|ZP_06367626.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283574363|gb|EFC22334.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 943 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 80/245 (32%), Positives = 127/245 (51%), Gaps = 8/245 (3%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + E +E++ L A++ AE S KSDFLA +SHEIRTPL+ IIG +++ +Q Sbjct: 422 VKERSRERD-LERARRQAEAASRAKSDFLANMSHEIRTPLSGIIGLTQMTLSQ----TPR 476 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P E I S +L IVND+LD SKIE+GKM L EA+ + Q + Sbjct: 477 PEVRENLEMILDSSRSLLGIVNDILDFSKIEAGKMEFSSVDFDLREALDRTMKPFQFSSR 536 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 +K + + A+++P +L D + Q+ N++ NA+ FT G + + +++ Sbjct: 537 QKGLKLSVRIASDVPEVLNGDPDRIMQVVRNLVGNALKFTDQGEVAVEFRLLRPGDPLLV 596 Query: 740 R--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 VRDTG+G+ L + F Q+ S+ R GTGLGL +++ +V+ G + S Sbjct: 597 ECSVRDTGIGIPEDRLPDLFQVFTQLEASRTKRFGGTGLGLAISRRLVEMMGGTIGVESR 656 Query: 798 PAKGT 802 G+ Sbjct: 657 SNHGS 661 >gi|196047471|ref|ZP_03114682.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB108] gi|225866565|ref|YP_002751943.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB102] gi|196021686|gb|EDX60382.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB108] gi|225790974|gb|ACO31191.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB102] Length = 587 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 100/376 (26%), Positives = 182/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ +L++ Sbjct: 240 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEE--------YLDRLYYE 291 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 +H TEI+ L +E+I + K K + L + I++ F Sbjct: 292 SFHH--TEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 344 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 345 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 388 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L V + + + Sbjct: 389 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSVGTVDMKGLLEDIHM 447 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+GG + + Sbjct: 448 VLDNKAGEKEISLQVNTLKRVS-VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDK 506 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 507 YNAYI-KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 565 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 566 VDSEVGEGTTFTVVLP 581 >gi|49478694|ref|YP_038633.1| phosphate regulon sensor protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330250|gb|AAT60896.1| phosphate regulon sensor protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 587 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 100/376 (26%), Positives = 182/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ +L++ Sbjct: 240 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEE--------YLDRLYYE 291 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 +H TEI+ L +E+I + K K + L + I++ F Sbjct: 292 SFHH--TEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 344 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 345 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 388 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L V + + + Sbjct: 389 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHM 447 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+GG + + Sbjct: 448 VLDNKAGEKEISLQVNTLKRVS-VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDK 506 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 507 YNAYI-KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 565 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 566 VDSEVGEGTTFTVVLP 581 >gi|49187478|ref|YP_030730.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Sterne] gi|49181405|gb|AAT56781.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Sterne] Length = 587 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 100/376 (26%), Positives = 182/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ +L++ Sbjct: 240 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEE--------YLDRLYYE 291 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 +H TEI+ L +E+I + K K + L + I++ F Sbjct: 292 SFHH--TEIIEL-----VEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 344 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 345 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 388 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L V + + + Sbjct: 389 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHM 447 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+GG + + Sbjct: 448 VLDNKAGEKEISLQVNTLKRVS-VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDK 506 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 507 YNAYI-KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 565 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 566 VDSEVGEGTTFTVVLP 581 >gi|213967062|ref|ZP_03395212.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] gi|301385247|ref|ZP_07233665.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato Max13] gi|302063302|ref|ZP_07254843.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato K40] gi|302130188|ref|ZP_07256178.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928384|gb|EEB61929.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] Length = 1170 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 125/232 (53%), Gaps = 3/232 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ S +KS+FLA +SHE+RTPL + + ++++ L +++A I +GN +L Sbjct: 488 QRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPSENL-TAEQVKFAESIYSAGNDLL 546 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++ND+LDISK+E+GK+ + E S+ V L Q A EK++ P +L Sbjct: 547 NLINDILDISKVEAGKLEVRPENSSVSRLVEGLRGLFQPLAAEKKLAFTVDIQAGAPTML 606 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + ++QI N+LSNAI FT +G + + + ++ VRD+G+G+ + Sbjct: 607 FTDRQRLEQILKNLLSNAIKFTEAGA-VSMVVSRQPGAGIVFSVRDSGIGIAEEHQQGIF 665 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q + R GTGLGL +++ + G + S P +G++ ++ P Sbjct: 666 EAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFTLVLP 717 >gi|129306891|gb|ABO30408.1| GacS [Pseudomonas sp. F96.27] Length = 204 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 124/206 (60%), Gaps = 8/206 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHEIRTPL I+GF+ +++ PR ++Y I++S + +L I+N++ Sbjct: 3 KSEFLANMSHEIRTPLNGILGFTLLLQKSEL----TPRQLDYLGTIEKSADSLLGIINEI 58 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRTSFANNIPRILADLRS 703 LD SKIE+GK+ L P +L + + + ++++ A+ K++ L+ + + ++ D Sbjct: 59 LDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLSLVGDPLR 118 Query: 704 VKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 +KQI N++SNAI FT G + ++ H + ++ + ++DTG+G++ ++ + F Sbjct: 119 LKQILTNLVSNAIKFTREGTIVARAMLEDEHEDSVQLRISIQDTGIGLSAQDVRALFQAF 178 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVD 786 Q NS + GTGLGL ++K +V+ Sbjct: 179 SQADNSLSRQPGGTGLGLVISKRLVE 204 >gi|260439089|ref|ZP_05792905.1| putative response regulator receiver domain protein [Butyrivibrio crossotus DSM 2876] gi|292808401|gb|EFF67606.1| putative response regulator receiver domain protein [Butyrivibrio crossotus DSM 2876] Length = 1103 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 88/291 (30%), Positives = 158/291 (54%), Gaps = 21/291 (7%) Query: 535 EEKLLSLRIIIKKL----PFSSCYSLT-MHDISEWKQEKNK-LSHAKKIAEKESSHKSDF 588 E K + L I I K + Y+L +H+ + + ++NK L A A + + KS+F Sbjct: 593 EYKWVRLDIKITKFCDGHTMEAVYALKDIHEERDMELKRNKQLVEATDAANRANKAKSNF 652 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY--IDRSGNLVLDIVNDLLD 646 L+ +SH+IRTPL AIIG +++ N + N + + Y+N I SG ++L +VN++LD Sbjct: 653 LSNMSHDIRTPLNAIIGMTDMAINH----IENRQRV-YSNLMKIKSSGRILLYLVNNILD 707 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--ILADLRSV 704 +S IESGK+ ++ P+SL + ++VQ EK + + +A N+ +L+D ++ Sbjct: 708 MSYIESGKVVVNESPLSLADLFHSVATMVQGQIKEKHLKFKV-YAKNVKNEIVLSDKSTL 766 Query: 705 KQIALNILSNAIHFTPSGGQIIIS-----TTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759 +I +N+L N+I +T G + +S T T I+++ DTG+GM+ +++ +P Sbjct: 767 NKIIINLLGNSIKYTKEYGLVSLSIEEQPTEITDLSNYIIKISDTGIGMSEDFVKRMFEP 826 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F + ++ EGTGLG+ + K +++ G + S G+ + PL Sbjct: 827 FERAKDTTISGVEGTGLGMSITKQLIEIVGGNIDVKSELNVGSEFTVTIPL 877 >gi|78048722|ref|YP_364897.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037152|emb|CAJ24897.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 1200 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 127/241 (52%), Gaps = 8/241 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S K+ FLA + HE+RTP+T ++G SE++ + + Y I R Sbjct: 823 HKQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTSL----DLKQRSYTESIRR 878 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--RILIRTSF 690 +G +L +VND LD+++IESG++ L EP S+ + V+E +L+ A E+ R + Sbjct: 879 AGAHLLRLVNDALDLARIESGRLELDVEPFSVRQLVAEVEALMAPLAQERGLRFSLEIGL 938 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 +I D ++QI LN+L+NAI FT G + TT S + + V DTG G+ Sbjct: 939 LGDIT-ASGDCTRIRQILLNLLNNAIKFTERGVVGLKLTTLGSYQGLRFEVADTGPGINA 997 Query: 751 YELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + + F Q ++ R G+GLGL + + + A G+ + S GT + P Sbjct: 998 EQKARLFQRFEQGDGARTTSRYGGSGLGLAICQELAIAMGGQIEVISRLGAGTRFVVDLP 1057 Query: 810 L 810 L Sbjct: 1058 L 1058 >gi|330967661|gb|EGH67921.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 1170 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 125/232 (53%), Gaps = 3/232 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ S +KS+FLA +SHE+RTPL + + ++++ L +++A I +GN +L Sbjct: 488 QRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPSENL-TAEQVKFAESIYSAGNDLL 546 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++ND+LDISK+E+GK+ + E S+ V L Q A EK++ P +L Sbjct: 547 NLINDILDISKVEAGKLEVRPENSSVSRLVEGLRGLFQPLAAEKKLAFTVDIQAGAPTML 606 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + ++QI N+LSNAI FT +G + + + ++ VRD+G+G+ + Sbjct: 607 FTDRQRLEQILKNLLSNAIKFTEAGA-VSMVVSRQPGAGIVFSVRDSGIGIAEEHQQGIF 665 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q + R GTGLGL +++ + G + S P +G++ ++ P Sbjct: 666 EAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFTLVLP 717 >gi|325291480|ref|YP_004277344.1| two component sensor kinase [Agrobacterium sp. H13-3] gi|325059333|gb|ADY63024.1| two component sensor kinase [Agrobacterium sp. H13-3] Length = 860 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 98/363 (26%), Positives = 169/363 (46%), Gaps = 18/363 (4%) Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ------NTPSVMNHYLTE 515 ++G+A+ +G I +N A L+G E +E + P + Sbjct: 504 AEGVAVFGADGRIRLSNPAFRALWGVTAEQAETGTHIRAVEAACTQSYDKPDGWRSFSQF 563 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS-LTMHDISEWKQEKNKLSHA 574 I S D + + TL E L L + +P + LT ++++ + + L Sbjct: 564 ITSFDDERPSRQGTL-----ELLSGLVLDYAIIPLPDAQTMLTFVNMTDSVRAERALKEK 618 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K K+DF+ VS+E+R+PLT IIGF++++K G L + R EY ++I S Sbjct: 619 NDALLKADELKNDFVQHVSYELRSPLTNIIGFTDLLKTPGIGELTD-RQAEYLDHISTSS 677 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +++L IVND+LD++ +++G M L++ L+E + + + E I + ++ Sbjct: 678 SVLLTIVNDILDLATVDAGIMQLNYSENDLNELLDDVSVQIADRLQESGISLEIVAPAHL 737 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 ++AD + +KQI + +L+NAI+F P G + +S S + + V D G G+ L+ Sbjct: 738 GSLVADHQRLKQILIKLLTNAINFAPEGSSVQLS-CQRSEGDFLFSVADKGPGIPEDMLK 796 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 F N R G GLGL + ++ V + G I S P GT++ P Sbjct: 797 AVFDRFETRGNGG--RRTGAGLGLSIVESFVSLHHGTVSIDSRPGNGTIVTCRIP--SGV 852 Query: 815 HPH 817 HPH Sbjct: 853 HPH 855 >gi|313113962|ref|ZP_07799518.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623725|gb|EFQ07124.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 858 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 86/262 (32%), Positives = 138/262 (52%), Gaps = 21/262 (8%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV----IKNQRFGP 617 ++ +++ +KL A + + K +FL +SH+IRTP+ AIIGF+ + I N+ Sbjct: 326 TQLEEQNHKLEIALQHEGAANRAKREFLFNMSHDIRTPMNAIIGFTSLAATHIDNRE--- 382 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + ++Y I S +L ++ND+LD+S+IESGK+ + + V L + V + S++Q Sbjct: 383 ----QVLDYLKKISTSSQHLLSLINDVLDMSRIESGKVKIEEKAVHLPDLVHDVRSIIQP 438 Query: 678 YANEKR--ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + KR + I T N I+ D + QI LNILSNAI FTP+GG I I + Sbjct: 439 NVSAKRLSLFIDTVDVEN-EDIITDPLRLNQILLNILSNAIKFTPTGGMISIRIAEKNGA 497 Query: 736 EVI-----LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 R++D G+GM+ + + F + NS +GTGLG+ + K +VD G Sbjct: 498 PAGRACYEFRIKDNGIGMSEEFQKHIFEEFAREENSTVSGIQGTGLGMSITKNIVDLMGG 557 Query: 791 KFYIFSTPAKGT--LIEIIFPL 810 I S P KG+ ++ + F L Sbjct: 558 SITIESEPGKGSEFIVNLCFAL 579 >gi|196228932|ref|ZP_03127798.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196227213|gb|EDY21717.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 958 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/252 (31%), Positives = 128/252 (50%), Gaps = 8/252 (3%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT-AIIGFSEVIKNQRFGPLGNPRYI-EY 626 ++L+ A+ +AE +S K FLA +SHE+RTPLT A+ S +I P +P + E+ Sbjct: 575 SELARARSVAESANSAKDSFLAVLSHELRTPLTPALAATSALIS----APPSDPEVLREF 630 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I R+ L +V+DLLD+++I K+ + V L + +A+S+ EK I Sbjct: 631 LAVIRRNIELEARLVDDLLDVTRINRDKLRIQPTTVDLHSILRDALSMAAPVLREKEIAT 690 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 P I D + Q+ N+L+NA FTP GQ+ + + V + V+DTG+ Sbjct: 691 VADLMAEGPAIHGDAARLAQVFSNLLTNAAKFTPESGQVTLR-SEVVGSMVRVMVKDTGI 749 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIE 805 G++ L +PF Q ++ R G GLGL +AK +V+A+ G +S P +G + Sbjct: 750 GISGEVLPHIFEPFRQGEAAKARRFGGLGLGLSIAKGLVEAHGGTIRAYSDGPGQGAVFT 809 Query: 806 IIFPLYDTSHPH 817 + P+ H Sbjct: 810 VELPVLSPDAVH 821 Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 108/230 (46%), Gaps = 6/230 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K++F A VSHE+RTPL I G E + + G R + + R+ L+ VNDL Sbjct: 168 KTNFFANVSHELRTPLALIFGPIERLLAE-IRDEGARRELAV---VRRNALLLHKYVNDL 223 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+SK+E GKM LH+ + + + + +E+ I + A D + Sbjct: 224 LDVSKLEVGKMELHYSRLDVATMARTVAGMFESMVSERGIAVAVK-ATGEAMAEVDGDKL 282 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +++ +N+LSNA + P G + ++ T ++ + L V D G G+ ++ + F Q Sbjct: 283 QRVFMNLLSNAFKYAPDGSTVRLTLT-GDDDHLTLTVEDAGPGVPVDLRKEIFERFQQGD 341 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 Q R GTGLGL + K V+ + G + G L + P + S Sbjct: 342 RETQRRYGGTGLGLSIVKEFVEMHRGSIVAGESSLGGALFRVQLPRHAPS 391 >gi|330875153|gb|EGH09302.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 1170 Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 125/232 (53%), Gaps = 3/232 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ S +KS+FLA +SHE+RTPL + + ++++ L +++A I +GN +L Sbjct: 488 QRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPSENL-TAEQVKFAESIYSAGNDLL 546 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++ND+LDISK+E+GK+ + E S+ V L Q A EK++ P +L Sbjct: 547 NLINDILDISKVEAGKLEVRPENSSVSRLVEGLRGLFQPLAAEKKLAFTVDIQAGAPTML 606 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + ++QI N+LSNAI FT +G + + + ++ VRD+G+G+ + Sbjct: 607 FTDRQRLEQILKNLLSNAIKFTEAGA-VSMVVSRQPGAGIVFSVRDSGIGIAEEHQQGIF 665 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q + R GTGLGL +++ + G + S P +G++ ++ P Sbjct: 666 EAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFTLVLP 717 >gi|302877626|ref|YP_003846190.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302580415|gb|ADL54426.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 834 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 82/269 (30%), Positives = 141/269 (52%), Gaps = 14/269 (5%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+E KQ + L AK++AE + KS+FLA +SHEIRTP+ A+IG SE+ + Sbjct: 426 TNWDITELKQSQQALQRAKEVAESLAQSKSEFLANMSHEIRTPMNAVIGLSELALDST-D 484 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN---LHFEPVSLDEAVSEAIS 673 P +++ N RS ++ I+ND+LD+SKIE+ +++ + F L +++ + Sbjct: 485 PAEKQSHLQQINDSSRS---LMGILNDILDLSKIEAHQLSVEKIQFNLTELLDSIQRIFT 541 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHT 732 L + + ++R + + + +L D ++QI N+L NA FT G + +S Sbjct: 542 LSAAGCDIEFNVVRDADIHQL--LLGDPLRLRQILTNLLGNAFKFTQKGRVTLNVSKIEN 599 Query: 733 SNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + LR V+D G+GM++ ++ +PF Q +S R GTGLGL +++ + G Sbjct: 600 TTDSTTLRFSVKDNGIGMSDGQVSTLFQPFSQADSSISRRFGGTGLGLTISRNLAQLMGG 659 Query: 791 KFYIFSTPAKGTL--IEIIFPLYDTSHPH 817 + S G+ +E+ F S P Sbjct: 660 DIKVESQAGAGSTFSVELTFSKVQVSDPQ 688 >gi|52081411|ref|YP_080202.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC 14580] gi|52786787|ref|YP_092616.1| PhoR [Bacillus licheniformis ATCC 14580] gi|319647319|ref|ZP_08001541.1| sensor protein [Bacillus sp. BT1B_CT2] gi|52004622|gb|AAU24564.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC 14580] gi|52349289|gb|AAU41923.1| PhoR [Bacillus licheniformis ATCC 14580] gi|317390666|gb|EFV71471.1| sensor protein [Bacillus sp. BT1B_CT2] Length = 581 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 103/374 (27%), Positives = 178/374 (47%), Gaps = 51/374 (13%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 R E++ +L +++E G+ +I+ +G I NRA K F + +L Sbjct: 232 RAQEMQRDRLQTVIENIDSGLILIDGKGYIHLVNRAYQKQFHVEADQLLY---------- 281 Query: 505 TPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLRIIIKKLPFS------------ 551 H+ E+L + L + + K K+ L I I++ F Sbjct: 282 ------HFYHEVLEHEEIINLIEEIFMTEAKVRKMFKLPIKIERRYFEVDGVPIIGINDE 335 Query: 552 -SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 L HD++E KQ L +K DF+A VSHE++TP+T+I GF+E + Sbjct: 336 WKGIVLVFHDMTERKQ----LEEMRK----------DFVANVSHELKTPITSIKGFTETL 381 Query: 611 KNQRFGPLGNPR--YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 + G + N R +++ + I + + + ++ DLLD+SKIE L+ + ++ E + Sbjct: 382 LD---GAM-NERETLLQFLSIILKESSRLQTLIQDLLDLSKIEQQNFTLNIQNCNIGEIL 437 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 +E L++ A EK I + + D +KQI LN+++NA+ +TP G + IS Sbjct: 438 AEIEMLLKNKAEEKGITLTLEKPDKPAVASGDPHRLKQIFLNLVNNALTYTPEDGSVTIS 497 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + V ++VRDTG+G+ E+ + + F +I + GTGLGL + K +V+A+ Sbjct: 498 -ADVLEDAVQVKVRDTGIGIKQSEIPRIFERFYRIDKDRSRNSGGTGLGLAIVKHLVEAH 556 Query: 789 MGKFYIFSTPAKGT 802 G+ + S KGT Sbjct: 557 QGEIDVESERGKGT 570 >gi|313905267|ref|ZP_07838634.1| multi-sensor hybrid histidine kinase [Eubacterium cellulosolvens 6] gi|313469878|gb|EFR65213.1| multi-sensor hybrid histidine kinase [Eubacterium cellulosolvens 6] Length = 1224 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 130/230 (56%), Gaps = 14/230 (6%) Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 E+ KS FLA +SHEIRTP+ AI+G +E+I + +P YA+ I +GN +L + Sbjct: 238 ENRAKSHFLANMSHEIRTPINAILGMNEMILRES----DDPEIQAYADSIKLAGNTLLGL 293 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEA--VSEAISLVQLYANEKRILIRTSFANNIPRIL 698 VND+LD S+IE+GKM + PV D + +++ ++++Q A +K + + FA N+P++L Sbjct: 294 VNDILDFSRIEAGKMEIL--PVDYDVSSLLNDLVNMIQSRAEDKGLELVLDFAENMPKLL 351 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-----SNEEVILRVRDTGVGMTNYE 752 D +KQ +NIL+NA+ +T G +N +++ V DTG+G+ + Sbjct: 352 HGDEVRIKQAIMNILTNAVKYTEKGSVTFRVGFERIENDPANVYLLVSVTDTGIGIRPED 411 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 LEK F +I + EGTGLG+ + +++++ + S +G+ Sbjct: 412 LEKLFHEFERIEEKRNRNIEGTGLGMNITRSILEMMGSHLEVSSIYGEGS 461 >gi|299535467|ref|ZP_07048789.1| alkaline phosphatase synthesis sensor protein [Lysinibacillus fusiformis ZC1] gi|298729228|gb|EFI69781.1| alkaline phosphatase synthesis sensor protein [Lysinibacillus fusiformis ZC1] Length = 511 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 98/373 (26%), Positives = 179/373 (47%), Gaps = 42/373 (11%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TVFLEQNTP 506 E+E +L +++E + +I REG I NR + FG ++D+ K F T+ L ++ Sbjct: 168 EVEEERLKTLIENMGSSLMMIGREGNISIVNRVFLERFGMQLDDVQGKVFRTIGLPKSLE 227 Query: 507 SVMNH-YLTEI-----LSLDLRQTL-EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559 ++H +LTE+ + ++++Q L K G+ +I + MH Sbjct: 228 QFIDHVFLTEMPYRQQIKMEVQQELYNKEVYGAP----------VIGDHGRWLGVVIVMH 277 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E +L +K DF+A VSHE+RTP+T+I GFSE + + + Sbjct: 278 DITELV----RLEQIRK----------DFVANVSHELRTPITSIKGFSETLLDGAYKD-- 321 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 I + I + N + ++ DLL++SKIE ++ P+ L + + L Sbjct: 322 EKMLISFLEIIYKESNRLQMLIQDLLELSKIEQHGFTVNIMPMGLQDVLIRGAELTAPRL 381 Query: 680 NEKRILIRTSFANNIPR---ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 +EK + SF +I R ++ D + QI N+++NAI ++P + I Sbjct: 382 DEKNM----SFQVDIERDVQVMGDANRIIQIVTNLITNAITYSPENTTVSIRLKENETHG 437 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +I + D G+G+ +E+ + + F ++ ++ GTGLGL + K +V+A+ G+ + S Sbjct: 438 II-EIEDQGIGIEKHEIARVFERFYRVDRARSRNSGGTGLGLAIVKHLVEAHHGRIQVES 496 Query: 797 TPAKGTLIEIIFP 809 GT + ++ P Sbjct: 497 EVGIGTKMIVMIP 509 >gi|253991255|ref|YP_003042611.1| two-component sensor/regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638303|emb|CAR66926.1| two-component sensor/regulator precursor [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782705|emb|CAQ85870.1| two-component sensor/regulator precursor [Photorhabdus asymbiotica] Length = 933 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 124/247 (50%), Gaps = 11/247 (4%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L+ AK+ AE + KS L +SHE+RTPL+ +G E++K + ++ A Sbjct: 385 LTEAKQQAELANKRKSRHLTTISHELRTPLSGTLGALELLKTSEM----DNEQLQLAETA 440 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + +L I+N LLD S+IE+G++ L + L + ++++ +Q A+ KR+ + T Sbjct: 441 HQCTLSLLFIINKLLDFSRIEAGQVELQYATCQLLPLLDQSMATIQGMAHNKRLTLETFV 500 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 A ++P+ ++ D VKQI +N+L NA FT GG I T S+ +I V D+G G+ Sbjct: 501 AADVPQSLVLDAIRVKQILVNLLGNACKFTDDGG--ICLTVTRSDNMLIFDVTDSGCGVA 558 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + PF Q+ Q +GTGLGL +A + G S GT + P Sbjct: 559 PENISSVFNPFYQV----QEHAQGTGLGLAIAATLAKMMGGSLKFNSAFGLGTSVVFQLP 614 Query: 810 LYDTSHP 816 L D P Sbjct: 615 LTDFIEP 621 >gi|89902313|ref|YP_524784.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] gi|89347050|gb|ABD71253.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] Length = 1007 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 147/242 (60%), Gaps = 10/242 (4%) Query: 566 QEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++KN +L A++ A+K + KS+FL+ +SHE+R+PL AI+GF++++++ P + Sbjct: 603 RDKNVELESARQAADKANLAKSEFLSSMSHELRSPLNAILGFAQLMESGVPPPTATQKA- 661 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I G +L+++N++LD++ IESGK++L EP++L + + + ++++ A + Sbjct: 662 -SIDQILHGGWYLLELINEILDLALIESGKLSLSMEPIALPDVLLDCQAMIEPQAQKSD- 719 Query: 685 LIRTSFAN-NIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 IR SF N P + AD VKQ+ +N++SNAI + GG + ++ + + + + VR Sbjct: 720 -IRISFPQFNAPCFVNADRTRVKQVIVNLMSNAIKYNRVGGTVEVTCKKVAAQRLRISVR 778 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRG-EGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G G++ ++ + +PF ++ Q++ EGTG+GL ++K +V+ G+ S G Sbjct: 779 DSGEGLSAEKVTQLFQPFNRL--GQEVGSEEGTGIGLVVSKRLVELMGGEIGAQSIVGTG 836 Query: 802 TL 803 ++ Sbjct: 837 SV 838 >gi|304312238|ref|YP_003811836.1| sensor histidine kinase/response regulator [gamma proteobacterium HdN1] gi|301797971|emb|CBL46193.1| sensor histidine kinase/response regulator [gamma proteobacterium HdN1] Length = 939 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 136/250 (54%), Gaps = 18/250 (7%) Query: 566 QEKNKLSHAK-KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + + + SH K IA+ E +++FL ++SHEIRTP+ I+G +E+++ P+ N Sbjct: 405 ERQAQASHLKNAIAQAEIRARNEFLTQLSHEIRTPMNGILGMTELLEETPLSPIQN---- 460 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +Y I SG+ +L I++D+LD S+IE+GKM L L +++ + + Q A EK I Sbjct: 461 DYVKTITASGSSLLGILDDILDYSRIETGKMALDISIFELATVLNDCLEVFQPRAQEKSI 520 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVILR 740 + +N+ P + D ++Q+ +++SNAI FT G+++++ ++ ++ + Sbjct: 521 QLNRLTSNDTPVHVKGDPIRIRQVLAHLISNAIRFTEQ-GEVLLTVSYDLDKTSPHIRFE 579 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 VRDTGVG+ L Q+ + QQ G+ +GLGL +A +V G+ S P K Sbjct: 580 VRDTGVGIPKQRLR-------QLLDGQQ-SGDKSGLGLTIASQLVRMMGGRLNATSEPGK 631 Query: 801 GTLIEIIFPL 810 G+ PL Sbjct: 632 GSTFWFSIPL 641 >gi|296161585|ref|ZP_06844390.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] gi|295888229|gb|EFG68042.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] Length = 1490 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 85/256 (33%), Positives = 133/256 (51%), Gaps = 8/256 (3%) Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 S +S D S ++L+ A+ +AE + K DF A +SHEIRTP+ ++G EV+ Sbjct: 811 SVVWSGYWVDASVEHARSDELARARDLAEAAARAKDDFFAMMSHEIRTPMNGVLGLVEVL 870 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + PL N E I S +L I++DLLD SKIE+G++ + E + + E V Sbjct: 871 ERT---PL-NTDQGEMLGMIHESAGALLQILDDLLDYSKIEAGRLTIEAESIDIRELVDN 926 Query: 671 AISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 A+ L+ A+EK + +R A ++ L D ++QI N+L NAI FTP G + + Sbjct: 927 AVGLLAGRAHEKGLKVRVDIAPDVAAALRGDSVRLRQILFNLLGNAIKFTPQGEVDVRVS 986 Query: 730 THTSNEEVI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 ++V + V DTG+G+ + +PF Q +S R GTGLGL + + ++D Sbjct: 987 VFAEADDVQTLEMTVEDTGIGIAPEVQNRLFEPFVQAESSTTRRFGGTGLGLTICRKLID 1046 Query: 787 ANMGKFYIFSTPAKGT 802 G + S P +GT Sbjct: 1047 LMGGSLALHSEPGRGT 1062 >gi|253563619|ref|ZP_04841076.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251947395|gb|EES87677.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] Length = 633 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 127/247 (51%), Gaps = 13/247 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ ++ A+ AE+ + KS FLA +SHEIRTPL AI+GFS ++ + Sbjct: 391 KRAHQRMKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLSMVE----DKEEML 446 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EYA I+ + L+L ++ND+LD+SKIESG + H V ++ +SE + +L + Sbjct: 447 EYAGIIETNTELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRIRTDEV 506 Query: 685 LIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + SFA +P+ + D + Q+ N++ NAI FT S G+I I + V Sbjct: 507 SL--SFAERLPQCVFHTDKNRLIQVLTNLVVNAIKFT-SQGEIQIGYRLQDAHTLYFYVS 563 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG GM+ + E + F + Q GTGLGL + K +++ G+ + S KG+ Sbjct: 564 DTGCGMSVEQCEHVFERFVKYNTFIQ----GTGLGLSICKMIIEKLGGEIGVQSESGKGS 619 Query: 803 LIEIIFP 809 + P Sbjct: 620 VFWFTLP 626 >gi|238897326|ref|YP_002923003.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA, regulates multidrug resistance [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465081|gb|ACQ66855.1| hybrid sensory histidine kinase in two-component regulatory system with EvgA, regulates multidrug resistance [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 1209 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 99/394 (25%), Positives = 192/394 (48%), Gaps = 33/394 (8%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF---LE 502 K++ EV ++L + + +++R+G I++ N+A + F D+ P + F L Sbjct: 569 KLQEEVTLRETLLNSIPVPVYVVDRDGYIINRNQAWNVFFEQKKMDLTEFPLSSFSHPLS 628 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF------SSCYSL 556 PS+ N + S++ + ++ T+ + E ++ I+ + +PF + Sbjct: 629 AVYPSLQNIFKNP--SIEKTVSAQRYTVNNGLENRI----ILHQAVPFIDRTGQPAGLIC 682 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D++ ++ LS ++ AE+ + KS FLA +SHEIRTP++AIIG E++ + Sbjct: 683 SWQDMTLYENLLKILSITRERAEQANRAKSTFLATMSHEIRTPISAIIGLLELVVTSKEH 742 Query: 617 PLGN--PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 + + P Y+ Y +S +L ++ D+LD++KIESGK+ L+ VS E + + + Sbjct: 743 VVSDDEPIYVAY-----QSAQSLLGLIGDILDMAKIESGKLELNPAWVSFHELILPVVKV 797 Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 A +K + + P + D +Q+ N+LSNAI FT G ++ + Sbjct: 798 FDGLARQKNLRLSCEIKTGHPDEVYIDPMRFRQVLSNLLSNAIKFTEIGSVDVLVKCISK 857 Query: 734 NE--------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 E + ++V+DTGVG++ + + +P+ Q + + GTGLGL + ++ Sbjct: 858 KEPLETHQIQRLEVKVKDTGVGISQADQKLVFQPYSQSDFGK--KQSGTGLGLSICLQLM 915 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 G + S +GT +E+ P+ ++ H Sbjct: 916 QMMNGSIKLNSELHQGTCVELSVPIQCRANIHQA 949 >gi|149173448|ref|ZP_01852078.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] gi|148847630|gb|EDL61963.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] Length = 575 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 77/234 (32%), Positives = 129/234 (55%), Gaps = 11/234 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +FLA +SHE+RTPL +I+GFS+++ N + N + Y + I SG +L +ND+ Sbjct: 298 KDEFLATMSHELRTPLNSILGFSDLLANSKDL---NEKQKRYVSNIQMSGKNLLAQINDV 354 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD++KIESGKM L +++ + + + + A++K I + + IP + D + Sbjct: 355 LDLAKIESGKMELQLSEITVADLIERRVGNMLPLADKKNIELTSEIDPKIPILFQDSIKI 414 Query: 705 KQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQ 762 +QI N+LSNAI FTP GG++ + + N +++ L V DTG+G+ E E + F Q Sbjct: 415 QQILNNLLSNAIKFTPEGGRVHVAARLCGENPKLMDLIVEDTGIGIPLDEQEHIFEKFRQ 474 Query: 763 IPNSQQIRG------EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +S + R EGTGLGL + + + G+ ++ S +G+ P+ Sbjct: 475 GKSSSESRDTMSRSYEGTGLGLSIIRELSKLLDGEVFLESEFGRGSKFTARLPV 528 >gi|91786469|ref|YP_547421.1| periplasmic sensor hybrid histidine kinase [Polaromonas sp. JS666] gi|91695694|gb|ABE42523.1| periplasmic sensor hybrid histidine kinase [Polaromonas sp. JS666] Length = 1127 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 106/406 (26%), Positives = 193/406 (47%), Gaps = 55/406 (13%) Query: 419 EKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILS 476 E+A QF + P+ + +R+N R + + LC+++ AT G+ + + S Sbjct: 544 EQAEQF-----LGSLLPKSLSSRVNFRVGHFTVVTLSLCALI-ATVMGMVYLQETALSAS 597 Query: 477 TNRAVSKLFGYPVEDILRKPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 T+ D+LR F VF + + + + S R ++ S ++ Sbjct: 598 TD----------AFDMLRSAFVKVFAVLLLIAAVCSWWVVLGSESRRMAQDE----SNRQ 643 Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 +LLS +I ++ L AK++AE + K+ ++A ++HE Sbjct: 644 NQLLS------------------REIEAHQRTDAALQTAKELAEAANQAKTRYVAGMTHE 685 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGN-PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 +RTPL +I+G+S+++ L N PR E I RSG +L +V+ LLD+++IE+G+ Sbjct: 686 LRTPLNSILGYSQILLKSE--ALANTPR--EAVQTIQRSGEHLLALVDGLLDLARIEAGR 741 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILS 713 + L P+ L + + +++V+ A K + + + +P + AD + ++QI +N+LS Sbjct: 742 LRLEPTPLPLPDFLDGLVNMVRPQAEAKDVDFIYTHSGRMPAWVQADAKRLRQIIINLLS 801 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 NA+HFT +G T H ++R V DTG+G+ + ++ PF + ++ RG Sbjct: 802 NAVHFTDTGS----VTLHVDCRREVIRFDVVDTGIGIAPQDQQRIFLPFERGAAGRR-RG 856 Query: 772 E-GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 E GTGLGL + + G + S KG+ + L + P Sbjct: 857 EPGTGLGLTITGLLTALMGGDLSLQSEQGKGSTFSVRLYLREIDDP 902 >gi|325262477|ref|ZP_08129214.1| sensory box sensor histidine kinase/response regulator [Clostridium sp. D5] gi|324032309|gb|EGB93587.1| sensory box sensor histidine kinase/response regulator [Clostridium sp. D5] Length = 1209 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 132/243 (54%), Gaps = 8/243 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q+K +L+ A AE+ ++ KSDFL+R+SHEIRTP+ AIIG S I Q G + + Sbjct: 658 QQQKEELAAALVAAEQANAAKSDFLSRMSHEIRTPMNAIIGMS-AIAAQSIGD--DEQVQ 714 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + + I S +L ++ND+LD+S+IESGKM L E + +E ++ S+ A + + Sbjct: 715 DCISKIGISSRFLLSLINDILDMSRIESGKMLLKNEKIPTEEFINGINSICYAQAASRNV 774 Query: 685 LIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIIST--THTSNEEVILR- 740 + + D ++Q+ +NILSNAI FT GG++ S + +V++R Sbjct: 775 EYECIVDPVLDDFYIGDAMKLQQVLINILSNAIKFTSEGGRVTFSVEQRQRTKNDVLMRF 834 Query: 741 -VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTGVGM+ + +PF Q GTGLGL ++K +VD G+ + S Sbjct: 835 IVNDTGVGMSEEFIPHIFEPFSQESTGTTALYGGTGLGLAISKNIVDMMDGRITVRSIKG 894 Query: 800 KGT 802 GT Sbjct: 895 IGT 897 >gi|91791902|ref|YP_561553.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans OS217] gi|91713904|gb|ABE53830.1| multi-sensor hybrid histidine kinase [Shewanella denitrificans OS217] Length = 1233 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 130/250 (52%), Gaps = 8/250 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ K + L AK AE + +KS+FLA +SHEIRTP+ AIIG ++ + Sbjct: 694 THKDITRQKSNEVALLEAKHDAELANMYKSEFLANMSHEIRTPMNAIIGMLQLASRTQL- 752 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L Y+ A + S +L I+ND+LD SKIE+GK+ L P SL++ + I + Sbjct: 753 TLQQQDYLNKAGF---SAESLLRIINDILDFSKIEAGKLELESVPFSLEKVLDHVIDMNA 809 Query: 677 LYANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 L A EK + L+ S + D + Q+ +N+LSNA+ FT G ++ + Sbjct: 810 LSAQEKGVELLLFSPLTTGLTLKGDPLRLGQVLVNLLSNAVKFTQDGEIELGCEDVGERD 869 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++ L+ VRDTG+G++ + F Q S + GTGLGL ++K +V G Sbjct: 870 TQISLKFWVRDTGIGISREQQANLFDAFSQADGSTTRQYGGTGLGLSISKHLVSMMGGNL 929 Query: 793 YIFSTPAKGT 802 + S P +G+ Sbjct: 930 SVESEPQQGS 939 >gi|188584892|ref|YP_001916437.1| multi-sensor signal transduction histidine kinase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349579|gb|ACB83849.1| multi-sensor signal transduction histidine kinase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 612 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 104/369 (28%), Positives = 191/369 (51%), Gaps = 26/369 (7%) Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 T++N K++ E + +I+++ DGI + N + I+ N+A +F ++++ T Sbjct: 256 TKMNVSKLKREKQKAEAIVQSIGDGIIVTNEDNKIILVNKAAEDVFDIREKEVID---TH 312 Query: 500 FLEQNTPSVMNHYLTEIL--SLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 FLE ++ N + +++ S D Q K + K+ RII+ P + S Sbjct: 313 FLE----ALNNQEIFDLIKKSKDESQLYYKSYTDISMIKDGDTNYYRIIVN--PIKAKDS 366 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 TM I+ Q+ KL KK+ E KS F++ VSHE RTPLT+I ++ ++ Sbjct: 367 KTMGVIT-LIQDITKL---KKVDE----LKSQFVSTVSHEFRTPLTSINMSIGLLLDKIP 418 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G + + + E I + +VN+LLD+S+IESGKM + F+ + + A+ + Sbjct: 419 GDINDDQK-ELLQVIQEDSERLNRLVNELLDLSRIESGKMQMDFDYYDIKNIIQHAVKPL 477 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ--IIISTTHTS 733 ++ A EK I I+ + ++N+P++ AD + + N++ NA+ +TP+ G I I T T+ Sbjct: 478 RIQAEEKNIQIKINVSDNLPKVRADHTKIGWVVSNLVGNALRYTPTDGTGVINIETKQTA 537 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 N +++ V D G G++ + F Q+ + +G G GLGL +++ +V A+ G + Sbjct: 538 N-KIVTSVTDNGSGISEEYQKIIFDKFLQVNGGESTQG-GAGLGLAISREIVRAHGGDMW 595 Query: 794 IFSTPAKGT 802 + S +G+ Sbjct: 596 VDSELGEGS 604 >gi|28869899|ref|NP_792518.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28853144|gb|AAO56213.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] Length = 1170 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 125/232 (53%), Gaps = 3/232 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ S +KS+FLA +SHE+RTPL + + ++++ L +++A I +GN +L Sbjct: 488 QRASKYKSEFLANMSHELRTPLNSSLILAKLLAENPSENL-TAEQVKFAESIYSAGNDLL 546 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++ND+LDISK+E+GK+ + E S+ V L Q A EK++ P +L Sbjct: 547 NLINDILDISKVEAGKLEVRPENSSVSRLVEGLRGLFQPLAAEKKLAFTVDIQAGAPTML 606 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + ++QI N+LSNAI FT +G + + + ++ VRD+G+G+ + Sbjct: 607 FTDRQRLEQILKNLLSNAIKFTEAGA-VSMVVSRQPGAGIVFSVRDSGIGIAEEHQQGIF 665 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q + R GTGLGL +++ + G + S P +G++ ++ P Sbjct: 666 EAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFTLVLP 717 >gi|269793330|ref|YP_003318234.1| PAS/PAC sensor signal transduction histidine kinase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100965|gb|ACZ19952.1| PAS/PAC sensor signal transduction histidine kinase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 673 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 135/246 (54%), Gaps = 17/246 (6%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ D++ K + L AK+ A+ ES +S ++RVSHEIRTPL +I+G+ +++K + G Sbjct: 340 TLKDVTSRKMVEEMLRSAKEQAQAESQARSRLMSRVSHEIRTPLNSIMGYLDLLKER--G 397 Query: 617 P-LGNPR-YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P L P+ E+ + I RSG +L +V +++D+S IE+GK+ + + +L + VSE L Sbjct: 398 PSLNLPQDASEWLDTIQRSGYHLLSVVEEIMDMSTIEAGKLKVREDRFNLRDLVSEVEHL 457 Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTT 730 + L A K + +R + ++P ++ D VKQ+ +N+L NAI FT G +I + + Sbjct: 458 MSLGAQRKGLDLRVRYLKSVPDQVTTDRGKVKQVLINLLGNAIKFTDEGTVTMEIWVESV 517 Query: 731 H----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 S+ V RVRD+G G+ +PF RG G GLGL ++ + + Sbjct: 518 RDMGARSHATVCFRVRDSGPGVDPSIRRSLFQPF----EKHGSRG-GAGLGLAISHSFAE 572 Query: 787 ANMGKF 792 A G Sbjct: 573 ALGGSL 578 >gi|218256903|ref|ZP_03474391.1| hypothetical protein PRABACTJOHN_00043 [Parabacteroides johnsonii DSM 18315] gi|218225891|gb|EEC98541.1| hypothetical protein PRABACTJOHN_00043 [Parabacteroides johnsonii DSM 18315] Length = 529 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 79/257 (30%), Positives = 138/257 (53%), Gaps = 17/257 (6%) Query: 560 DISEWKQEKNKLSHAKKI----AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +I E + K H K I A++ + KS FLA +SHEIRTPL AI+GFS ++ + + Sbjct: 275 NIREKLRAAEKERHQKNIELAKAQESNKLKSMFLANMSHEIRTPLNAIVGFSSILADMQE 334 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + + Y + I+++ +L+L ++ND+LD SKIE+G ++H + E E ++ Sbjct: 335 EDMDERHF--YVDIINKNSDLLLQLINDILDFSKIEAGTFDIHLKKFDFKEICEEIYAVH 392 Query: 676 QLYANEKRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 L + + SF ++P + +D + + Q+ N L+NAI FT S G+I + Sbjct: 393 ALKIPDH---VCFSFNRDLPSVELNSDPKRLTQVISNFLTNAIKFT-SDGEIKLDYL-LE 447 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +++ + V DTG+G++ F ++ +Q GTGLGL ++K++++ GK Sbjct: 448 KDKIYVSVTDTGIGISEEACNNIFDRFVKLNTHKQ----GTGLGLSISKSIIEKLGGKIG 503 Query: 794 IFSTPAKGTLIEIIFPL 810 ++ST KG+ PL Sbjct: 504 VYSTLGKGSTFWFTLPL 520 >gi|149191688|ref|ZP_01869930.1| sensor protein TorS [Vibrio shilonii AK1] gi|148834477|gb|EDL51472.1| sensor protein TorS [Vibrio shilonii AK1] Length = 973 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 136/245 (55%), Gaps = 11/245 (4%) Query: 571 LSHAKK--IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 L+HAK AE+ + KS FLA +SHEIRTP+ ++G + +++ PL N + ++ + Sbjct: 454 LNHAKARNAAEQANRAKSAFLATMSHEIRTPMNGVLGTATLMEET---PLNNQQQ-KFLD 509 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RSG +L I+ND+LD SKIE+G + + +P L + + L+ A EK + + Sbjct: 510 VINRSGQNLLAILNDVLDYSKIEAGHLEIRNKPFDLYRMIQDCYQLMLGKALEKGLDFKF 569 Query: 689 SFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--VILRVRDTG 745 +++ + D+ + Q+ N++ NAI FTPS GQ+ I + ++E V++ V DTG Sbjct: 570 HIESDVSDVYCGDVTRLSQVLNNLVGNAIKFTPS-GQVDIYVSLDPDDETCVMIEVSDTG 628 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 VG++ + F Q N G GTGLGL +++ +V A G Y+ S +G+ Sbjct: 629 VGISPEDQLNLFDAFTQAENGYSTAG-GTGLGLAISQKLVKAMNGAIYVDSYLEEGSRFW 687 Query: 806 IIFPL 810 + PL Sbjct: 688 FVVPL 692 >gi|118581557|ref|YP_902807.1| multi-sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] gi|118504267|gb|ABL00750.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] Length = 587 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 96/376 (25%), Positives = 175/376 (46%), Gaps = 39/376 (10%) Query: 437 DVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 D+ RI+ + ++ E +L +IL +G+ + + +G I N A K+F + + Sbjct: 229 DMAERIDAQMHGLDAEKTRLDAILRGMGEGVMVASADGAITLVNPAFRKMFAM-TDGVEG 287 Query: 495 KPFTVFLEQNTPSVMNHYLTEI---LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 K H L LS ++R +TL L+ + + Sbjct: 288 KKLIEVCRNPDLQAAFHDLARCGGELSREIRIQPGDVTL--------LTHWVPLAMDGAG 339 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 HDI++ K H +++ + DF+A VSHE+RTP++ I G++E + Sbjct: 340 QGVVAVFHDITDMK-------HVEEM-------RRDFVANVSHELRTPVSVIKGYAETLM 385 Query: 612 NQRF---GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 P R++E I R + ++ND+L +S +E+ L + + + Sbjct: 386 QNDMLVSEPEHATRFVEI---IRRHAERLTTLINDILTLSCLEARNSALELNAMDVGTTI 442 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 +++ +L+ A EK+I + NN+PR L D ++Q+ +N++ NA+ +TP GG I + Sbjct: 443 AKSCALLAPRAAEKKICLHNEVGNNLPRTLVDQGRLEQVLVNLIDNAVKYTPEGGTIRL- 501 Query: 729 TTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 E LR V+D+G+G+ +L + + F ++ + GTGLGL +AK +V Sbjct: 502 --FAEQGETFLRISVQDSGIGIPPRDLPRIFERFYRVDEGRSREQGGTGLGLAIAKHIVQ 559 Query: 787 ANMGKFYIFSTPAKGT 802 + G+ + STP KG+ Sbjct: 560 LHGGELTVTSTPGKGS 575 >gi|149188199|ref|ZP_01866493.1| sensory box histidine kinase/response regulator [Vibrio shilonii AK1] gi|148837788|gb|EDL54731.1| sensory box histidine kinase/response regulator [Vibrio shilonii AK1] Length = 1205 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 87/256 (33%), Positives = 137/256 (53%), Gaps = 24/256 (9%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS------EVIKNQRF 615 + ++ +KL+ A+ A+ + KSDFLA +SHEIRTP+ AIIG S ++ K QR Sbjct: 458 AALEKSADKLAIARDEADYANQAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTKAQR- 516 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 Y + S + +L ++ND+LD SKIE+GK+++ L+ + +LV Sbjct: 517 ---------NYIQKVKLSADTLLGLINDILDFSKIEAGKLDIEHVDFRLENVLDNISNLV 567 Query: 676 QLYANEK--RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH 731 L A+E+ +LI TS ++P L D + QI N+ +NA+ FT G +I I+ + Sbjct: 568 GLKASEQGLELLIHTS--KDVPTALYGDPLRLGQILTNLANNAVKFTEQGEVKITITADN 625 Query: 732 TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 N++V LR V DTG+GMT + +K F Q +S + GTGLGL ++K + Sbjct: 626 LENDDVTLRFAVSDTGIGMTPEQTQKLFNKFTQADSSTTRKYGGTGLGLAISKELCLLMG 685 Query: 790 GKFYIFSTPAKGTLIE 805 G + S +G+ E Sbjct: 686 GDIEVRSQFGEGSTFE 701 >gi|149247545|ref|XP_001528181.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] gi|146448135|gb|EDK42523.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] Length = 2592 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 81/243 (33%), Positives = 126/243 (51%), Gaps = 18/243 (7%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +++ AK+ AE ++ K+ FLA +SHEIRTP +++ S + + PL N EY Sbjct: 2077 SQMELAKQAAEDATAEKASFLANMSHEIRTPFNSLLSCSIFLLDT---PL-NSTQREYVE 2132 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL--VQLYANEKRILI 686 I S + L+I++ +L SKIE G L P SL++ + AI L Q+ NE ++ Sbjct: 2133 AIKSSAMVTLNIIDGILAFSKIEHGSFTLDNAPFSLNDCIESAIQLGGEQVVDNELELV- 2191 Query: 687 RTSFANNIPRI---LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVIL 739 F NN P+I + D+ V+QI +N++ NAI FT S G II+S E+++ Sbjct: 2192 ---FFNNCPQINTVMGDVTRVRQIIINLVGNAIKFT-SQGHIIVSCNAAEITPDRYEILI 2247 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ +K F Q+ S + G+GLGL ++K + D G S Sbjct: 2248 SVEDTGIGIPEMSHKKVFGAFSQVDGSSRREFGGSGLGLAISKKLADIMGGDIRFESQEG 2307 Query: 800 KGT 802 G+ Sbjct: 2308 MGS 2310 >gi|157963514|ref|YP_001503548.1| PAS/PAC sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] gi|157848514|gb|ABV89013.1| PAS/PAC sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] Length = 1234 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 83/250 (33%), Positives = 131/250 (52%), Gaps = 8/250 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ K+ + + AK+ AE + +KS+FLA +SHEIRTP+ AIIG ++ + Sbjct: 694 THKDITRHKRNEVAMLEAKQDAEMANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLT 753 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P Y+E A + S + +L I+ND+LD SKIE+GK+ L LD+ + A+ L Sbjct: 754 P-QQKDYLEKAGF---SAHSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHALDLNA 809 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 L A EK + + IL D + Q+ +N+LSNA+ FT SG ++ + Sbjct: 810 LKAQEKGVELLLYAPVTAGLILEGDPLRLGQVLINLLSNAVKFTQSGEIELGCEDVGERD 869 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + L+ +RDTG+G++ + F Q S + GTGLGL ++K +V G Sbjct: 870 HRITLKFWIRDTGIGISKEQQATLFDAFAQADGSTTRKYGGTGLGLSISKHLVSLMGGTM 929 Query: 793 YIFSTPAKGT 802 + S + G+ Sbjct: 930 QVESEMSVGS 939 >gi|121998422|ref|YP_001003209.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila SL1] gi|121589827|gb|ABM62407.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila SL1] Length = 633 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 77/279 (27%), Positives = 146/279 (52%), Gaps = 13/279 (4%) Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRT 598 + P ++ DIS+ KQ + +++ A++ AE+ S KS+FLA +SHE+RT Sbjct: 221 RAYPSDEGLAVYFRDISQRKQAEAEMAQLNEELHQARERAEQASRAKSEFLAAMSHELRT 280 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PL AI GF++++ P ++ I +G + D++ D++D ++IE+G++ +H Sbjct: 281 PLNAITGFAQLLHQT--PPDETQDRDQHLEQILSAGWHLRDLIGDVIDFAQIETGQLAVH 338 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRT-SFANNIPRILADLRSVKQIALNILSNAIH 717 EP+++D +++++ A + + + S P AD +Q+ LN+LSNA+ Sbjct: 339 AEPMAIDALARNSVAMITEQARRRGLTVHCQSDPIAPPWARADPVRSRQVLLNLLSNAVK 398 Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 + G I + T T+ V + V DTG G+ + ++ +PF ++ + EG+G+G Sbjct: 399 YNNPHGTITV-TWSTAGGSVQVDVADTGSGIPHGRRDRLFEPFERL-GREAGSIEGSGIG 456 Query: 778 LPLAKAMVDANMGKFYIF-STPAKGTLIEIIFPLYDTSH 815 L L++ + G + S+P +GT + + P Y H Sbjct: 457 LSLSQRLARMMSGDLQLLHSSPDRGTTMRLTLPRYSDDH 495 >gi|254423801|ref|ZP_05037519.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] gi|196191290|gb|EDX86254.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] Length = 427 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 129/238 (54%), Gaps = 13/238 (5%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S KS+FLA +SHE+RTPL AIIGFS+++ + G + N + + +G +L+++ Sbjct: 175 SRLKSEFLATMSHELRTPLNAIIGFSQILLGGKKGDI-NETQRDMLGRVLSNGRHLLELI 233 Query: 642 NDLLDISKIESGKMNLHFEPVSLD--EAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699 +D+L++SKIE+G++ L EP +D + V E + +Q K++ ++ N P I Sbjct: 234 SDILELSKIEAGRLEL--EPCKMDLVKLVEETVEELQSLITPKQLDLKVDITLNDPIITN 291 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQII----ISTTHT----SNEEVILRVRDTGVGMTNY 751 D V+Q+ +N+LSNAI FT G + ++T H+ +EE++L V DTG G+++ Sbjct: 292 DPTRVRQVLINLLSNAIKFTQHGSITVSIKSLTTKHSCMNGGSEEILLSVSDTGCGISDV 351 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + F Q GTGLGL + ++V G + S KG+ + P Sbjct: 352 DQPYIFEAFHQSDQRTNRHHAGTGLGLAITYSLVKMMCGDITVESQVDKGSTFRVRIP 409 >gi|170737061|ref|YP_001778321.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3] gi|169819249|gb|ACA93831.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3] Length = 1237 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 87/264 (32%), Positives = 145/264 (54%), Gaps = 14/264 (5%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 +S D++ K + +L+HAK+ AE ++ K+ FLA +SHEIRTP+ I+G E+++++ Sbjct: 613 WSGVWSDVTHIKAQAKELAHAKEAAELAAASKARFLATMSHEIRTPMNGIVGMLELLRHE 672 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 L R + + I S ++ I++D+LD SKI++G++ + EP L + + Sbjct: 673 SLS-LKQQRML---HMIGESAMTLMQILDDVLDFSKIDAGQLEIVNEPTDLRALLDGVSA 728 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLR----SVKQIALNILSNAIHFTPSGG---QII 726 + A++K +++R ++ R+ A+L ++QI N+LSNAI FT SG ++ Sbjct: 729 VAGTLAHDKGLVVRNFVSH---RLAAELEIDGLRLRQILFNLLSNAIKFTESGEVGIRVE 785 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 I + + V V DTG+G+T +L+ PF Q S R GTGLGL + K +V+ Sbjct: 786 IIDCRNACQRVRFTVHDTGIGITPAQLQCLFAPFTQADTSISRRFGGTGLGLAICKRLVE 845 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPL 810 G I STP GT + + F L Sbjct: 846 LMQGSIRIESTPRIGTHVIVEFDL 869 >gi|262173923|ref|ZP_06041600.1| sensor protein TorS [Vibrio mimicus MB-451] gi|261891281|gb|EEY37268.1| sensor protein TorS [Vibrio mimicus MB-451] Length = 968 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 127/257 (49%), Gaps = 11/257 (4%) Query: 559 HDISEWKQEKNK--LSHAKK--IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 H +SE + N+ L+HAK AE+ S KS FLA +SHEIRTP+ ++G + +++ Sbjct: 440 HQLSEMNHKLNQEVLNHAKARYQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQETS 499 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 Y I+RSG +L I+ND+LD SKIE+G + +H L V E L Sbjct: 500 LTSTQQ----HYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHQTHFDLYRLVRETHEL 555 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +Q A EK I + F +++ R D + Q+ N++ N I FT G I + Sbjct: 556 MQSRALEKGITLSYQFEDDVTRYWQGDEIRIGQVLNNLVGNGIKFTEQGHVCIRISQDPE 615 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + + V D+G+G+ + F Q + R +GTGLGL +++ +V A G+ Sbjct: 616 GQGIHFAVEDSGIGIAEQDQASLFDAFTQAEAGR--RKQGTGLGLAISRKLVQAMGGELQ 673 Query: 794 IFSTPAKGTLIEIIFPL 810 + S +G+ PL Sbjct: 674 LSSQLGQGSCFSFTLPL 690 >gi|331682500|ref|ZP_08383119.1| TMAO reductase sytem sensor TorS [Escherichia coli H299] gi|331080131|gb|EGI51310.1| TMAO reductase sytem sensor TorS [Escherichia coli H299] Length = 904 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 133/250 (53%), Gaps = 19/250 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK + KS FLA +SHEIRTPL I+G ++++ + P N + + D Sbjct: 422 QARAEAEKANQAKSAFLAAMSHEIRTPLYGILGTAQLLAD---NPALNAQRDDLRAITD- 477 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEAVSEAISLVQLYANEKRILIR 687 SG +L I+ND+LD S IE+G N+ FEP L E+ + L+ + I + Sbjct: 478 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLEST---LQLMSGRVKGRPIRLA 534 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A+++P ++ D R ++Q+ N+LSNA+ FT G II + T E+ ++ V D+G Sbjct: 535 TAIADDVPTALMGDPRRIRQVITNLLSNALRFTDEGH--IILRSRTDGEQWLVEVEDSGC 592 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + Sbjct: 593 GIDPAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCL 648 Query: 807 IFPLYDTSHP 816 L + P Sbjct: 649 RLLLRIATAP 658 >gi|254883253|ref|ZP_05255963.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] gi|319642628|ref|ZP_07997274.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_40A] gi|254836046|gb|EET16355.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] gi|317385716|gb|EFV66649.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_40A] Length = 554 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 78/283 (27%), Positives = 135/283 (47%), Gaps = 29/283 (10%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT+ D++ K+ ++L A++ AE K+ FLA +SHEIRTPL AI+GF+ ++ Sbjct: 165 LTVRDVTRQKKILDELEEARRNAELAGEQKTAFLANMSHEIRTPLNAIVGFAGLL----- 219 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G + I Y I + N++L +VND+LD+SKIE+G + + V +++ + E + Sbjct: 220 GTASDQDRISYVEIIKGNTNMLLQLVNDILDMSKIEAGTLEFIYTDVDVNQIMRELEGIF 279 Query: 676 QLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +L E + +R F +P I + + Q+ N LSNA +T G I Sbjct: 280 RLRLEEADVPVRIIFEPKLPVCFIHTEKNRISQVISNFLSNAFKYTVQGS--ITMGYEIR 337 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + V DTG G+ ++ + + F ++ +Q GTGLGL +++ ++ G+ Sbjct: 338 ENGICFYVSDTGTGIPEDKVSQVFERFTKLDAKRQ----GTGLGLSISRTIIKKMGGEIG 393 Query: 794 IFSTPAKGTLIEIIFP----------------LYDTSHPHDCI 820 + S +G+ + P D S P C+ Sbjct: 394 VTSKYGEGSTFWFVLPEKPFDFLPLQSEEKEQFIDLSEPESCL 436 >gi|220906024|ref|YP_002481335.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219862635|gb|ACL42974.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 816 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 100/390 (25%), Positives = 186/390 (47%), Gaps = 28/390 (7%) Query: 436 EDVDTRINKRKMEIEVMQ--LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 E ++ R+ +R + + L IL A ++ I + + + +L + P +L Sbjct: 441 EQLEQRVTQRTAALRQAEAELRGILAAMTELILVFDTQERLLKIVPTSTDQENQPPASLL 500 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 +P P+V+ E + +RQ I L T SL + +++ +S+C Sbjct: 501 YQPL--------PTVLPSPQVEAIRASMRQA---IALEQTCTVDY-SLVVGDREVWYSAC 548 Query: 554 YS--------LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 S DI+E + + +L+ + ++ + KS F++ SHE RTPLT I+ Sbjct: 549 ISPINGDSVIFVARDITEQHRAEEELARTLEKEKQLNELKSRFVSMTSHEFRTPLTTILS 608 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 +E++++ G PR +++ I + + +++N +L +SK E+G++ H + ++L+ Sbjct: 609 STELLQSHSH-KWGEPRDLKHLERIHTAVERMTELLNGVLVLSKAEAGRLEFHPQSLNLE 667 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + + + +Q A E ++L S N ++ D + ++ I N+LSNAI ++P GG + Sbjct: 668 QFCRDLVEDLQSSAPEHQLLF--SLTGNCTQVEMDEKLLQHILPNLLSNAIKYSPRGGSV 725 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 T TS V +++D G+G+ +L + F + N I GTGLGL + K V Sbjct: 726 RFEVTCTST-SVCFQIQDQGIGIPAADLPHLFESFHRAKNVGNI--SGTGLGLAIVKKSV 782 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 D + G + S GT +I PL T H Sbjct: 783 DLHGGTISVTSEVGIGTTFIVILPLQLTVH 812 >gi|83593696|ref|YP_427448.1| multi-sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC 11170] gi|83576610|gb|ABC23161.1| multi-sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC 11170] Length = 1560 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 98/353 (27%), Positives = 165/353 (46%), Gaps = 30/353 (8%) Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 A+I+ + R++S FG P+E F VF+ ++ + Q Sbjct: 793 ALIHLADQVAERGRSLSDEFGVPIEG-----FRVFVHRSERDGVEA-----------QEW 836 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 + E LL + I + + Y D+S K+ + L AK+ AE+ S K Sbjct: 837 TYVRKDGGHLEVLLVVTAIREDDGRIAGYLGVAQDVSRRKEFERALVLAKQAAEEASVVK 896 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 FLA +SHEIRTP+ AI+G +++ P +Y + +L ++ND+L Sbjct: 897 GQFLANMSHEIRTPMNAILGMLTLVQRTAL----TPHQADYVCKAHSAAGSLLGLLNDIL 952 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--ILADLRS 703 D SKIE+GK++L P L+ + + ++ +K + + A ++P I DLR Sbjct: 953 DFSKIEAGKLHLEPHPFRLETVLRDLAVVLSGSYGDKGVEVLFDIAPHLPDSFIGDDLR- 1011 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR----DTGVGMTNYELEKAMKP 759 ++Q+ LN+ NA+ FT GQ+I+S + E+ L +R DTG+G+ +L Sbjct: 1012 LRQVLLNLAGNALKFTDQ-GQVIVSVGVLAREDDRLTMRMAVSDTGIGIAADQLASIFGA 1070 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT--LIEIIFPL 810 F Q S R G+GLGL + + +V+ G + S P +G+ +I P+ Sbjct: 1071 FEQAETSTTRRFGGSGLGLTITRHLVERMGGVLRVESQPGRGSRFWFDITLPV 1123 >gi|150389840|ref|YP_001319889.1| PAS/PAC sensor hybrid histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149949702|gb|ABR48230.1| PAS/PAC sensor hybrid histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 773 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 84/260 (32%), Positives = 137/260 (52%), Gaps = 19/260 (7%) Query: 557 TMHDIS-------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 T+ DI+ E K++ +L K+ AE + KS FLA +SHEIRTP+ I G ++ Sbjct: 364 TLEDITDRKIIEEELKEKYKQLELLKEEAENANKAKSQFLANMSHEIRTPMNGIFGVVQL 423 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 +++ G N +Y N + S + + I+ND+LDISKIESG L+ EP +L E +S Sbjct: 424 LESTDVGAEQN----KYINMLKESTHTLAGIINDILDISKIESGTFKLNNEPFNLTEMIS 479 Query: 670 EAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSG-----G 723 + + N K + + NI P+++ D +KQI N++SNA+ +T G Sbjct: 480 SIYHGLLVDGNAKGLEVGYYLDPNINPQVIGDELKLKQILTNLISNAVKYTEQGFVSFRV 539 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 I HT E++ V+D+G+G+ + EK + F Q +S + + +GTGLGL ++K Sbjct: 540 NRISFDEHT--EKIQFNVKDSGIGIKDGFKEKIFEDFSQEDSSTRKKYQGTGLGLAISKN 597 Query: 784 MVDANMGKFYIFSTPAKGTL 803 + G S +G++ Sbjct: 598 LALLMQGDISFESKLGEGSI 617 >gi|254412478|ref|ZP_05026252.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196180788|gb|EDX75778.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1082 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 82/269 (30%), Positives = 145/269 (53%), Gaps = 21/269 (7%) Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 +C DIS+ KQ + L AK AE+ + KS FL+ +SHE+RTPL AIIGF++++ Sbjct: 572 TCLIAVSQDISDRKQVEFALQRAKDTAEQANRAKSQFLSNMSHELRTPLNAIIGFAQLLG 631 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 R L + ++ I RSG +L ++N++L +SK+E+G++ L+ L + Sbjct: 632 --RDSSLTQEHH-DHIGIICRSGEHLLSLINNVLQLSKVEAGQVKLNCYSFDLYGMLQVL 688 Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-------- 722 + +L A K + + + +PR + D ++Q+ +N+++NAI FT G Sbjct: 689 EEMFKLQAENKGLQLVVDYDEALPRYVETDEGKLRQVLINLVNNAIKFTSQGGVTLRVKA 748 Query: 723 --GQIIISTTH-TSN-----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 G++ ST H T N +++ + DTG+G+ + E+E + F Q ++ EGT Sbjct: 749 VQGEMGESTRHPTFNTLPIPQKLRFEIEDTGLGIASEEIESLFEAFVQTEAGRK-SLEGT 807 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 GLGLP+++ V G+ ++ S +G++ Sbjct: 808 GLGLPISQQFVRLMGGEIHVSSRLNQGSI 836 >gi|328470858|gb|EGF41769.1| putative sensor histidine kinase [Vibrio parahaemolyticus 10329] Length = 785 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 130/254 (51%), Gaps = 8/254 (3%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 MH++ KQ ++L AE+ + KS FLA +SHE+RTP+ ++G S++I + P Sbjct: 246 MHNL---KQLNSELEAETDKAERAAKAKSSFLAAMSHELRTPMNGVLGISQLIAEETKEP 302 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + E+ I SG ++ I+ND+LD SK+E K+ L P L++ ++ S +Q Sbjct: 303 VTK----EHIKVILDSGQHLMTILNDILDFSKVEENKLELEEAPFHLEQVLTPVCSAIQP 358 Query: 678 YANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 +EK I LI + N D ++QI N+ NA+ FT G +I + + +++ Sbjct: 359 LIDEKSIELIVENDVPNNTEFTGDCARLRQILFNLAGNAVKFTNEGHVLIRTELNGEDKQ 418 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +++ V DTG+G+ + + F Q +S R GTGLGL + K + + G + S Sbjct: 419 LLIIVSDTGIGIAPDKQGRVFNSFEQADSSTTRRFGGTGLGLAIVKKLTELMGGSITLKS 478 Query: 797 TPAKGTLIEIIFPL 810 GT + P+ Sbjct: 479 VEGVGTQFIVTLPI 492 >gi|260778655|ref|ZP_05887547.1| periplasmic sensor hybrid histidine kinase [Vibrio coralliilyticus ATCC BAA-450] gi|260604819|gb|EEX31114.1| periplasmic sensor hybrid histidine kinase [Vibrio coralliilyticus ATCC BAA-450] Length = 926 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 79/250 (31%), Positives = 131/250 (52%), Gaps = 11/250 (4%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 S+ +Q +L+HAK++AEK ++ KS+ L +SHE+RTPL I G E+++N + N Sbjct: 380 SKVEQRTVELAHAKQLAEKATARKSEHLTNISHELRTPLNGITGSLELLRNTQM----NE 435 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + + N +L I+N+LLD S+IE+ ++ L+ L + V EA+ +Q Sbjct: 436 QQADLRNTAYTCAKSLLSIINNLLDFSRIEADQIELNLASNPLLKVVDEAMLTIQSNVIN 495 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K + ++T A+NIP + D V+Q+ +N+L NA FT G I + ++ + Sbjct: 496 KPVELKTVVADNIPESCIFDPIRVRQVLVNLLGNAAKFTEQGH--IFLYIDSEDDMLYFT 553 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG G+ +L++ +PF Q Q GTGLGLP+++ + G + S Sbjct: 554 VEDTGPGIAANKLDEVFEPFRQSSQHQV----GTGLGLPISRKLASIMGGSLSLKSELGV 609 Query: 801 GTLIEIIFPL 810 G+ PL Sbjct: 610 GSTFIFAMPL 619 >gi|153836688|ref|ZP_01989355.1| RscS; sensor kinase protein [Vibrio parahaemolyticus AQ3810] gi|149750037|gb|EDM60782.1| RscS; sensor kinase protein [Vibrio parahaemolyticus AQ3810] Length = 785 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 130/254 (51%), Gaps = 8/254 (3%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 MH++ KQ ++L AE+ + KS FLA +SHE+RTP+ ++G S++I + P Sbjct: 246 MHNL---KQLNSELEAETDKAERAAKAKSSFLAAMSHELRTPMNGVLGISQLIAEETKEP 302 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + E+ I SG ++ I+ND+LD SK+E K+ L P L++ ++ S +Q Sbjct: 303 VTK----EHIKVILDSGQHLMTILNDILDFSKVEENKLELEKAPFHLEQVLTPVCSAIQP 358 Query: 678 YANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 +EK I LI + N D ++QI N+ NA+ FT G +I + + +++ Sbjct: 359 LIDEKSIELIVENDVPNNTEFTGDCARLRQILFNLAGNAVKFTNEGHVLIRTELNGEDKQ 418 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +++ V DTG+G+ + + F Q +S R GTGLGL + K + + G + S Sbjct: 419 LLIIVSDTGIGIAPDKQGRVFNSFEQADSSTTRRFGGTGLGLAIVKKLTELMGGSITLKS 478 Query: 797 TPAKGTLIEIIFPL 810 GT + P+ Sbjct: 479 VEGVGTQFIVTLPI 492 >gi|302185533|ref|ZP_07262206.1| PAS [Pseudomonas syringae pv. syringae 642] Length = 1187 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 75/262 (28%), Positives = 134/262 (51%), Gaps = 8/262 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E KQ + +L +A ++A + + KS FLA +SHEIRTP+ AIIG E+ + Sbjct: 670 DITERKQLEQQLQNAVRMAAQANEAKSAFLASMSHEIRTPMGAIIGLLELEREHTLRRGE 729 Query: 620 NPRY-IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P + ++ A+ RS ++ ++ + LD+++IE+G + L L + I L Sbjct: 730 TPSHGLQVAH---RSATELVALIGESLDLARIEAGSLQLSLAITPLHDLFDGVIELFSAQ 786 Query: 679 ANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSN 734 A EK + +R F A D ++Q+ N+L NA+ FT G ++ +++ + + Sbjct: 787 AREKSVELRMEFSAQARGDYWLDPMRLRQVLHNVLGNALKFTRQGAVVVKVDVTSESSGS 846 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V + ++D+G G+ + +PF Q + G+GLGL + + +V+ G + Sbjct: 847 TRVRISIQDSGEGIEPERQQHVFQPFTQASDDTAAHYGGSGLGLSITRQLVELMKGDISL 906 Query: 795 FSTPAKGTLIEIIFPLYDTSHP 816 S P +GTL+ + PL + P Sbjct: 907 HSEPGQGTLVTVDLPLTRLNEP 928 >gi|258623924|ref|ZP_05718877.1| sensor protein TorS [Vibrio mimicus VM603] gi|258583718|gb|EEW08514.1| sensor protein TorS [Vibrio mimicus VM603] Length = 968 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 127/257 (49%), Gaps = 11/257 (4%) Query: 559 HDISEWKQEKNK--LSHAKK--IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 H +SE + N+ L+HAK AE+ S KS FLA +SHEIRTP+ ++G + +++ Sbjct: 440 HQLSEMNHKLNQEVLNHAKARYQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQETS 499 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 Y I+RSG +L I+ND+LD SKIE+G + +H L V E L Sbjct: 500 LTSTQQ----HYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHQAHFDLYRLVRETHEL 555 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +Q A EK I + F +++ R D + Q+ N++ N I FT G I + Sbjct: 556 MQSRALEKGITLSYQFEDDVTRYWQGDEIRIGQVLNNLVGNGIKFTEQGHVCIRISQDPD 615 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + + V D+G+G+ + F Q + R +GTGLGL +++ +V A G+ Sbjct: 616 GQGIRFAVEDSGIGIAEQDQVSLFDAFTQAEAGR--RKQGTGLGLAISRKLVQAMGGELQ 673 Query: 794 IFSTPAKGTLIEIIFPL 810 + S +G+ PL Sbjct: 674 LSSQLGQGSCFSFTLPL 690 >gi|269836401|ref|YP_003318629.1| PAS/PAC sensor signal transduction histidine kinase [Sphaerobacter thermophilus DSM 20745] gi|269785664|gb|ACZ37807.1| PAS/PAC sensor signal transduction histidine kinase [Sphaerobacter thermophilus DSM 20745] Length = 598 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 94/379 (24%), Positives = 184/379 (48%), Gaps = 48/379 (12%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 N +E E +L +I+E +DGI I++ +G + N A +L G P + +L +P+ + Sbjct: 240 NIEAIEAERARLSAIVEHLTDGILIVDDQGQLALINNAAERLLGTPRDRLLNRPYAL--- 296 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL---RIIIKKLPFSSCYSLT-- 557 +V +H L E+++ + G +L + R ++ + +S + T Sbjct: 297 ----AVRDHDLAEVIA--------QAHSGDEPVRRLFEIGQPRRYVEGVAYSIPHRATPV 344 Query: 558 ---MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 + D++E + + + DF+A VSHE+RTP+ ++ E + + Sbjct: 345 VVILRDVTELR--------------RTDMIRRDFVANVSHELRTPIASLKALVETLLD-- 388 Query: 615 FGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD--EAVSEA 671 G L + E+ ++ + + +V DLL++S+ ESG++ L PV+ D + Sbjct: 389 -GALEDEEVAHEFLARMETEVDGLARLVQDLLELSRAESGRLTL--SPVAADIRRVAEQV 445 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 I+ ++ A K++ IR + + D ++Q+ +N++ NA+ FTP GG II Sbjct: 446 IARLRTQAEPKKLDIRIEIPDGLTPGRFDPERIEQVLVNLVHNAVKFTPPGG-IITVGAA 504 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 ++ +++ V DTG G+ + ++ + F + S+ GTGLGL +A+ +V+ + G+ Sbjct: 505 AEDDHLVVWVADTGPGVAPEDRDRIFERFYKTDRSRA--DAGTGLGLSIARHLVELHGGR 562 Query: 792 FYIFSTPAKGTLIEIIFPL 810 ++ T GT I+ PL Sbjct: 563 IWVDGTARPGTTIKFTLPL 581 >gi|32472478|ref|NP_865472.1| receptor-like histidine kinase BpdS [Rhodopirellula baltica SH 1] gi|32443714|emb|CAD73156.1| receptor-like histidine kinase BpdS [Rhodopirellula baltica SH 1] Length = 1998 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 131/247 (53%), Gaps = 6/247 (2%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 K KL AK AE+ + KS+FLAR+SHEIRTP+T I+GF+E++ R + + Sbjct: 1415 KEKLQIAKTAAEEANQAKSEFLARMSHEIRTPITGILGFTELLL--RGVVTDDAERESHL 1472 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I +G +L ++ND+LDISKIE+ K+ + V + I+ ++ A EK I + Sbjct: 1473 QTIHSNGFHLLHLLNDILDISKIEADKIETERVLCNPSWMVQDVIASLRSKAIEKDISLE 1532 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRD 743 + P I +D ++QI N+ SNAI FT GG I + S E ++ + VRD Sbjct: 1533 IQVDSEFPEEIYSDPTRLRQILTNLTSNAIKFTNQGGVTISISAIGSGETASKMKIAVRD 1592 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G+GMT + +PF Q S GTGLGL ++K + +A G + S GT Sbjct: 1593 SGIGMTQEQTAFIFEPFKQADVSTTREYGGTGLGLSISKRLAEALDGTLEVESERGVGTQ 1652 Query: 804 IEIIFPL 810 + + F + Sbjct: 1653 MILNFDI 1659 >gi|119356453|ref|YP_911097.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM 266] gi|119353802|gb|ABL64673.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM 266] Length = 1398 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 134/255 (52%), Gaps = 10/255 (3%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + L A+ AE + KS+FLA +SHEIRTP+ +IG + ++ + + + Sbjct: 849 RHETALVDARYAAESANRAKSEFLANMSHEIRTPMNGVIGMANLLLDTDL----SDEQRD 904 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 +A+ + SG +L ++ND+LD SKIE+GK+ L L + + +++ L A EK + Sbjct: 905 FADMLLASGESLLTVINDILDFSKIEAGKLELEHIVFDLRKLLESFGAVMGLKAVEKNLE 964 Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--V 741 + +P D ++QI N+ NAI FT +G + +S +N + +LR V Sbjct: 965 FNCVVSPEVPVFFKGDPGRIRQILNNLAGNAIKFTQNGNVTVAVSMQSENNGDAVLRFSV 1024 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +DTG+G+ +L++ K F Q+ S + GTGLGL +++ +V+ GK + S G Sbjct: 1025 KDTGIGIPEAKLDRLFKSFTQVDASTTRKYGGTGLGLAISRQLVELMGGKIGVISHEGNG 1084 Query: 802 TLIEIIFPLYDTSHP 816 + E F ++ P Sbjct: 1085 S--EFWFTIFLKKQP 1097 >gi|311278813|ref|YP_003941044.1| histidine kinase [Enterobacter cloacae SCF1] gi|308748008|gb|ADO47760.1| histidine kinase [Enterobacter cloacae SCF1] Length = 949 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 83/259 (32%), Positives = 132/259 (50%), Gaps = 19/259 (7%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG +++ + P G Sbjct: 445 DVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLHTKEL-PKG 503 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + + S +L+L I++D+LD SKIES ++ + S E +S + A Sbjct: 504 VDRLV---TAMSNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMS------HITA 554 Query: 680 NEKRILIRTSFA-------NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 N +++R + P+++ D ++Q+ N+LSNAI FT G II Sbjct: 555 NYLPLVVRKQLGLYCFIDPDVPPQMVGDPMRLQQVISNLLSNAIKFTDMG--CIILHLRQ 612 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++ + + VRDTGVG+ E+ + PF Q+ Q +GTGLGL + + +++ G Sbjct: 613 DSDYLSISVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDI 672 Query: 793 YIFSTPAKGTLIEIIFPLY 811 + S P G+ I PLY Sbjct: 673 AVDSEPGMGSQFTIRIPLY 691 >gi|288871335|ref|ZP_06117244.2| sensory box histidine kinase/response regulator [Clostridium hathewayi DSM 13479] gi|288863842|gb|EFC96140.1| sensory box histidine kinase/response regulator [Clostridium hathewayi DSM 13479] Length = 894 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 129/252 (51%), Gaps = 10/252 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ L K+ AE S KSDFL+++SHEIRTPL I+G E+ KN P R Sbjct: 353 KRSNELLRLEKERAEAASRAKSDFLSQMSHEIRTPLNGIMGMVELGKNHIDEP---GRMR 409 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I S +L ++ND+LD+SKIESGK+ LH E L + + ++ + A ++I Sbjct: 410 NCLDKITFSSTHLLSLINDILDMSKIESGKIELHPELFDLGKLLRALTTVFHVQAINRQI 469 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI--IISTTHTSNEEVILR- 740 + + ++ D + QI N+LSNA+ FTP+ G + I T + + LR Sbjct: 470 DFQIFLRGEVTEYLVGDALRLNQILTNLLSNAVKFTPAQGSVNLNIETLRRDDHRIWLRF 529 Query: 741 -VRDTGVGMTNYELEKAMKPFGQIPNSQQIRG-EGTGLGLPLAKAMVDANMGKFYIFSTP 798 V+DTG G+ + + +PF Q NS R GTGLGLP+ ++ + G + S Sbjct: 530 EVKDTGRGIAPENIHRIFEPFTQ-ENSGIARNYGGTGLGLPITRSFTEMMGGSITVSSEV 588 Query: 799 AKGTLIEIIFPL 810 G++ + P Sbjct: 589 GTGSVFTVDLPF 600 >gi|242280332|ref|YP_002992461.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123226|gb|ACS80922.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 923 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 81/247 (32%), Positives = 134/247 (54%), Gaps = 14/247 (5%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E K +L AK AE S KS+F+A VSHEIRTP+ AIIG +++ + + Sbjct: 255 ELKIINRELEIAKDEAEAASKSKSEFMANVSHEIRTPMNAIIGMADLTMETDL----SSK 310 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV--QLYAN 680 E+ I SG ++L ++ND+LD SKIE+GK++L +L + + + L Q+ A+ Sbjct: 311 QREFIKIIISSGKVLLRLINDILDFSKIEAGKLSLEEVNFNLHQLIHDISDLFVEQMVAS 370 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----HTSNE 735 + ++I +P RI+ D ++Q+ +NI +NA FT S G+III+ + + + Sbjct: 371 QTELVI--DIRPGVPQRIIGDPLRLRQVLVNITANAFKFT-SKGEIIITVSADQINATKT 427 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 E++ ++DTG+G+ + F Q S + GTGLGL ++K +V+ G + Sbjct: 428 EIVFAIKDTGIGIPEEVQPHLFEAFKQADGSTTRKYGGTGLGLSISKRIVNLMGGNIWFR 487 Query: 796 STPAKGT 802 S P G+ Sbjct: 488 SRPEDGS 494 >gi|83815646|ref|YP_444896.1| sensory transduction histidine kinase [Salinibacter ruber DSM 13855] gi|83757040|gb|ABC45153.1| sensory transduction histidine kinase [Salinibacter ruber DSM 13855] Length = 757 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 82/247 (33%), Positives = 122/247 (49%), Gaps = 11/247 (4%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF---GPLGNPRY 623 ++ L AK+ AE+ S KS LA SHE RTPLT+IIGF+E I P+G Sbjct: 494 QEEALRTAKQEAEEASQMKSALLANTSHEFRTPLTSIIGFAEEIATMAEDDDAPIGR--- 550 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 +A++I+ SG +L ++ +L++S+++ G + EP + EA A E Sbjct: 551 --FADHIENSGRRLLGTLDAILNLSRLQGGTLRRPSEPTDMTTVAEEAADQFYPEAVEAD 608 Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 I +RT AN P AD ++ N++SNA+ +T GG + I T +E +L V Sbjct: 609 IALRTE-ANGTPVWTRADPEGLRIALQNLISNAVKYTEPGGDVWIR-VRTGDEAAVLEVE 666 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTGVGM + E +PF Q EGTGLGL + K V+ G + + G+ Sbjct: 667 DTGVGMDPAQTETLFEPFRQESEGMGREYEGTGLGLAVTKEAVEQMGGAIEVETEKGAGS 726 Query: 803 LIEIIFP 809 + P Sbjct: 727 RFTVRLP 733 >gi|119715628|ref|YP_922593.1| PAS sensor protein [Nocardioides sp. JS614] gi|119536289|gb|ABL80906.1| PAS sensor protein [Nocardioides sp. JS614] Length = 977 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 84/269 (31%), Positives = 137/269 (50%), Gaps = 13/269 (4%) Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 P +++ D +E K+ + +L A+ A S KS FLA +SHEIRTPL ++G +E Sbjct: 423 PAVRGIVISLSDSTERKEMELELGRARDAALAGSRAKSTFLATMSHEIRTPLNGVLGLTE 482 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA- 667 ++ R + + YA I +G +L ++ND+LD SKIE+G++ L E V LD A Sbjct: 483 LMLTTRL----DGQQGRYAEGIRVAGEALLQVINDILDFSKIEAGRLEL--EEVDLDVAR 536 Query: 668 -VSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQI 725 + E +V A EK + + + +P L D ++Q+ LN+ SNAI FT +G + Sbjct: 537 LLDETARMVAGPAQEKGLALVVRCSPEVPPGLRGDAVRLRQVLLNLTSNAIKFTRTGEVV 596 Query: 726 IISTTHTSNEEVILRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 + + + + VR DTG+G+ + E F Q ++ R GTGLGL ++ Sbjct: 597 LSAQLERAPVADVASVRFEVADTGIGIDPAQREHLFDAFTQADSTTTRRFGGTGLGLAIS 656 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + +V A G + G+ ++ PL Sbjct: 657 RQLVTAMGGAIGVEPRSGPGSRFWVVVPL 685 >gi|149197352|ref|ZP_01874403.1| SENSORY TRANSDUCTION HISTIDINE KINASE [Lentisphaera araneosa HTCC2155] gi|149139370|gb|EDM27772.1| SENSORY TRANSDUCTION HISTIDINE KINASE [Lentisphaera araneosa HTCC2155] Length = 1182 Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 86/274 (31%), Positives = 143/274 (52%), Gaps = 20/274 (7%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y+L +S KQ + K+ AE ++ KS+FLA +SHEIRTP+ AIIG +++ Sbjct: 530 YTLNKQLLSSNKQSQ----ELKEEAEAANTAKSEFLANMSHEIRTPMNAIIGLAQLGLKD 585 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + G ++ EY I +S +L I+ND+LD SKIE+GKM + P L+E + + Sbjct: 586 KSGE----KHEEYLYKIKQSSENLLTIINDILDFSKIEAGKMTMEKIPFKLNEVLEKVGG 641 Query: 674 LVQLYANEKRI-LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 ++ + + LI F + +++ D ++Q+ LN+L NA+ +T G I+ Sbjct: 642 TLRGRMTNRNVDLI---FPGPLSYKLVGDPLRLEQVLLNLLGNALKYTRKGHVILSVDEK 698 Query: 732 TSNEEVI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 E+ I V DTG+G+++ + + +PF Q S + GTGLGL ++K +V Sbjct: 699 ELKEDSICLQFSVEDTGIGLSDTQRNRLFQPFAQGDTSTTRKYGGTGLGLSISKKIVKYM 758 Query: 789 MGKFYIFSTPAKGTLIEII----FPLYDTSHPHD 818 G+ ++ S P KG++ PL D + D Sbjct: 759 GGEIWLDSMPHKGSVFCFTANFEIPLEDRTKTRD 792 >gi|229158190|ref|ZP_04286257.1| hypothetical protein bcere0010_43680 [Bacillus cereus ATCC 4342] gi|228625148|gb|EEK81908.1| hypothetical protein bcere0010_43680 [Bacillus cereus ATCC 4342] Length = 558 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 96/376 (25%), Positives = 181/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ L + + + + P Sbjct: 211 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEEYLDRLY--YESFHHPE 268 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 ++ + +E+I + K K + L + I++ F Sbjct: 269 II-------------ELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 315 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 316 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 359 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + + + Sbjct: 360 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHM 418 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+GG + + Sbjct: 419 VLDNKAGEKEISLQVNALKRVS-VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDK 477 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 478 YNAYI-KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 536 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 537 VDSEVGEGTTFTVVLP 552 >gi|163845790|ref|YP_001633834.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222523498|ref|YP_002567968.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163667079|gb|ABY33445.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222447377|gb|ACM51643.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 762 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 126/224 (56%), Gaps = 2/224 (0%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ K+ FLA VSHE+RTPLT IIG++++++ G L +P E +Y+ ++ ++ Sbjct: 520 QRADRLKTGFLATVSHELRTPLTTIIGYTDMLRRGVLGEL-SPEVQETLHYMRQASLNLM 578 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++D+L+ S++E+G++ + EPV + V + +Q E ++ + + ++P I Sbjct: 579 RLISDILEFSRMEAGQLIIDIEPVPVSVIVQNVVGQMQPQIREHQLHLMVNIPPDLPMIQ 638 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 A+ ++Q+ +N+LSNAI F G I I T E V + VRDTG+G+ + E+ + Sbjct: 639 ANAGRLEQVLINLLSNAIKFNRPQGLIEIK-AETRGEWVRISVRDTGIGIAPADQERIFE 697 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 F ++ G GLGL + + ++ GK + STP +G+ Sbjct: 698 EFERVKQKNGHSVSGVGLGLAICRRLIQHMGGKIGVKSTPGEGS 741 >gi|319936551|ref|ZP_08010965.1| two-component hybrid sensor kinase/response regulator [Coprobacillus sp. 29_1] gi|319808349|gb|EFW04909.1| two-component hybrid sensor kinase/response regulator [Coprobacillus sp. 29_1] Length = 852 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 86/259 (33%), Positives = 130/259 (50%), Gaps = 26/259 (10%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV----IKNQRFGPLGN 620 K + +L A++ A + + KS+FLA +SH+IRTP+ AI+G + + I NQ Sbjct: 325 KLQLQELEKARETAIEANKAKSEFLANMSHDIRTPMNAIVGMTAIATAHIDNQE------ 378 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + I S +L ++ND+LD+SKIESGK++L E +SL E V I ++Q Sbjct: 379 -QVKNCLKKITLSSKHLLGLINDVLDMSKIESGKLSLTMEAISLKEVVEGIIIIMQPQVK 437 Query: 681 EKRILIRTSFANNIPRI-----LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN- 734 K + F +I I D + Q+ LN+LSNA FTP GG I S + Sbjct: 438 AK----KQKFGIHIEDISTENVWCDGVRLNQVLLNLLSNATKFTPDGGSIDFSLLEEESP 493 Query: 735 -----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + + V+D G+GMT LEK + + + + + EG GLG+ + K +VDA Sbjct: 494 KGENYARIHIIVKDDGIGMTPAFLEKIYESYSRADGRRIHKTEGAGLGMAITKYIVDAME 553 Query: 790 GKFYIFSTPAKGTLIEIIF 808 G + S KGT I+ Sbjct: 554 GTIDVQSELGKGTEFHIVL 572 >gi|310796709|gb|EFQ32170.1| hsp90-like protein [Glomerella graminicola M1.001] Length = 2508 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 83/267 (31%), Positives = 142/267 (53%), Gaps = 21/267 (7%) Query: 552 SCYSLTMHDISEWKQEKNKLSHAK-------KIAEKESSHKSDFLARVSHEIRTPLTAII 604 S +L +++ + + K HA+ K+AE+ + KS FLA VSHE+RTPL +I Sbjct: 1913 SMVALQKRALAKALEAETKAKHAEAEAKRNVKLAEEAAKAKSIFLANVSHELRTPLNGVI 1972 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G SE++K+ + E A+ I S L+L ++ND+LD S++E+ KM L+ + Sbjct: 1973 GNSELLKDSEL----DKDQQEMADNIKVSAELLLTVINDILDFSRMEADKMKLYVIAFNP 2028 Query: 665 DEAVSEAISLVQLYANEKRIL---IRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFT 719 +E V E + V Y+N ++ ++ N+P +L D + Q+ N++SN++ FT Sbjct: 2029 EEMVREVVRAVS-YSNRQKTKQKNVKIIQDINLPSMLIFGDPIRLHQVLGNLISNSLKFT 2087 Query: 720 PSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 G I + + + ++ RV+DTG+G+ +L K +PF Q S + G+GL Sbjct: 2088 EDGSITIGARVESETNDKATLLFRVQDTGIGIPQQQLVKLFQPFSQADTSTARKYGGSGL 2147 Query: 777 GLPLAKAMVDANM-GKFYIFSTPAKGT 802 GL + K++++ M GK + S GT Sbjct: 2148 GLSICKSLIETMMKGKIQLDSQEGVGT 2174 >gi|169334577|ref|ZP_02861770.1| hypothetical protein ANASTE_00980 [Anaerofustis stercorihominis DSM 17244] gi|169259294|gb|EDS73260.1| hypothetical protein ANASTE_00980 [Anaerofustis stercorihominis DSM 17244] Length = 928 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 84/280 (30%), Positives = 142/280 (50%), Gaps = 18/280 (6%) Query: 552 SCYSLTMHDISEWKQEKNK----LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 S YSL M D++E + E+ + L A + A+ + K++FL+ +SH+IRTP+ AI+G + Sbjct: 383 SFYSLGM-DVTEERMEQERQRIALEDAYQTAKVANEAKTNFLSSMSHDIRTPMNAIMGMA 441 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 + K P + + N I+ S +L ++N++LD+SKIESGK+NL E + L E Sbjct: 442 AIAKMNTNEP---DKVRDCLNKINISSKHLLSLINEVLDMSKIESGKINLMLEKIDLSEL 498 Query: 668 VSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 V + + EK ++ S +++AD ++Q+ LN++SNAI +TP GG I Sbjct: 499 VENVADICKPLVAEKNQQLKMSVGRVRHEKVIADGDRLQQVLLNLMSNAIKYTPEGGTIT 558 Query: 727 ISTTHTSNE-------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 S+ E I D G+GM + +PF + +S+ + +GTGLG+ Sbjct: 559 FRINELSSAIDNLGQYEFIF--IDNGIGMAEDFIPHIFEPFSRAEDSRISKIQGTGLGMA 616 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 + +V G + ST G+ + P+ + C Sbjct: 617 ITDNIVRMMNGIIEVQSTLGVGSKFVVSVPMEIQNEEEMC 656 >gi|91774323|ref|YP_567015.1| multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91713338|gb|ABE53265.1| HATPase domain-containing multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 505 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 92/351 (26%), Positives = 171/351 (48%), Gaps = 7/351 (1%) Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTEILSLDLR- 522 I +I+++ + N+ + GY ++I+ K F FL + ++ L Sbjct: 157 IGVISKDLKVTLVNQKACDVLGYEKDEIIGKNWFDAFLPGYVRERIKEGYIGVIEGKLEP 216 Query: 523 -QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAE 579 + EK L T EE+L+ ++ + ++ + DI+E K + + A + E Sbjct: 217 PEYSEKPILNKTNEERLIFWHDVVLRDKDNNIIGTISSGDDITERKIAEKAMEEANRELE 276 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 + K FL ++HE+RTPL +I GF+E++ GP+ + + + + R+ + Sbjct: 277 LLDNIKDQFLTNLTHELRTPLISIKGFTELMLEDHMGPINDAQK-NAIHTVLRNSERLRH 335 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699 +V LL +S + + + + +SL + E + +K + I + ++P IL Sbjct: 336 LVESLLYVSGEHTKNIKYNMDVLSLTKITEEILETFTAPILKKGLTIERNIQTDLPTILG 395 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759 D +K++ ++L NAI FTP GG+I IS H S E VI+ + DTG+G+ L Sbjct: 396 DKDHLKRMINHLLDNAIKFTPEGGKIGISALHDS-ESVIINIEDTGIGIPEELLPNIFSR 454 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F Q+ S + + GTG+GL + K +++A+ G + S +GT+I + P+ Sbjct: 455 FYQVDGSTRRKYGGTGVGLHICKKIIEAHKGSLSVSSKIGEGTIISVKLPI 505 >gi|225388358|ref|ZP_03758082.1| hypothetical protein CLOSTASPAR_02094 [Clostridium asparagiforme DSM 15981] gi|225045581|gb|EEG55827.1| hypothetical protein CLOSTASPAR_02094 [Clostridium asparagiforme DSM 15981] Length = 972 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 123/227 (54%), Gaps = 10/227 (4%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 ++ KSDFL+R+SHEIRTP+ AIIG S I Q G + + + + I S +L ++ Sbjct: 679 NAAKSDFLSRMSHEIRTPMNAIIGMS-TIAAQHIGD--DEQVADCISKIGISSRFLLSLI 735 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI--PRILA 699 ND+LD+S+IESGKM L E + +E ++ S+ A K + A+ + + Sbjct: 736 NDILDMSRIESGKMLLKNEKIPTEEFLNGINSICYAQAASKGVDYEC-IADPVLDDYYVG 794 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVI-LRVRDTGVGMTNYELEK 755 D ++Q+ +NILSNAI FT GG++ S + T N+ V+ V DTGVGM+ + Sbjct: 795 DAMKLQQVLINILSNAIKFTSEGGKVTFSASQRKKTKNDAVLRFIVNDTGVGMSEEFIPH 854 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +PF Q GTGLGL ++K +VD G+ + S GT Sbjct: 855 IFEPFSQESTGTTAVYGGTGLGLAISKNIVDMMDGRITVRSIKGIGT 901 >gi|91202023|emb|CAJ75083.1| hypothetical histidine kinase protein [Candidatus Kuenenia stuttgartiensis] Length = 545 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 133/249 (53%), Gaps = 18/249 (7%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ + KSDF++ +SH ++TPLTAI +E++ ++ G + + ++ N I + ++ Sbjct: 290 EQLDTMKSDFISNISHNLKTPLTAIKEANELMLDKIAGQISFEQ-MKLLNIIKGNTLRLI 348 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++NDLLDIS+IE+G M +F+P + + +SE+I V+ +K I I+ + +P +L Sbjct: 349 LMINDLLDISRIEAGLMRYNFQPAQIRDVISESIEDVRFLTEKKGIFIQYEDDSLVPHVL 408 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIIST---------------THTSNEEVILR--V 741 D + QI N+LSN+I FTP+GG I I +N + L+ + Sbjct: 409 LDRGKIAQIMDNLLSNSIKFTPTGGVITIKAFVVDASMLSPIFAQQGKLNNIQSFLQISI 468 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ F Q+ N ++ +GTGLGL +AK +V+ + G ++ S G Sbjct: 469 SDTGIGIPKEHQNSIFDKFQQVVNKRESGIKGTGLGLFIAKHIVEDHGGNIWLESNCGSG 528 Query: 802 TLIEIIFPL 810 + PL Sbjct: 529 STFHFTLPL 537 >gi|289646215|ref|ZP_06477558.1| PAS [Pseudomonas syringae pv. aesculi str. 2250] Length = 1185 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 79/260 (30%), Positives = 131/260 (50%), Gaps = 7/260 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K+ + +L A ++A + + KS FLA +SHEIRTP+ AIIG E+ Sbjct: 671 DITERKRLEQQLQEAMRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLELECAHALRKGH 730 Query: 620 NP-RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P + ++ A+ RS ++ ++ + LD+++IE+G M L SL I L Sbjct: 731 TPSQGLQVAH---RSATELVALIGESLDLARIEAGGMQLSLTVTSLQALFEGVIELFSAQ 787 Query: 679 ANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A EK + +R F+ L LR ++Q+ N+L NA+ FT G ++ + Sbjct: 788 AREKDLELRLEFSEQAQGDYWLDPLR-LRQVLHNVLGNALKFTRQGSVVLRVAALDDSSR 846 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V + ++D+G G+ ++ +PF Q + G+GLGL + + +V G + S Sbjct: 847 VRIGIQDSGEGIEPERQQQIFQPFTQASDDTAAHYGGSGLGLSITRQLVQLMKGDISLHS 906 Query: 797 TPAKGTLIEIIFPLYDTSHP 816 +P +GTL+ I PL S P Sbjct: 907 SPGEGTLVNIDLPLVRVSEP 926 >gi|162456717|ref|YP_001619084.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161167299|emb|CAN98604.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 553 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 124/234 (52%), Gaps = 15/234 (6%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S KS FLA +SHE+RTPL +I+GF+++++ P R+ E I +SG +L +V Sbjct: 76 SRSKSAFLANMSHELRTPLNSILGFAQLVERD---PSLADRHRENLAVICKSGEHLLGLV 132 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700 ND+L+++KIE+G+M L L + +S + + A ++ + + A ++PR + D Sbjct: 133 NDILEMAKIEAGRMTLVDAEFDLHDTLSGLSEMFAVEAQKRGLTLTVERAQDVPRHVHGD 192 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----------EVILRVRDTGVGMTN 750 ++Q+ +N+L NA+ FTP G + ++ + V V DTG GM Sbjct: 193 EGKLRQVLINLLGNALKFTPRGSVTLRASARRATGAHDGAAAGRVRVSFEVTDTGRGMAK 252 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 EL + + F Q +Q R EGTGLGL +++ +V G + S +GT + Sbjct: 253 AELAELFEAFAQTATGRQSR-EGTGLGLHISRRIVRMMGGDIRVESQVGRGTTL 305 >gi|74317005|ref|YP_314745.1| multi-sensor hybrid histidine kinase [Thiobacillus denitrificans ATCC 25259] gi|74056500|gb|AAZ96940.1| Multi-sensor Hybrid Histidine Kinase [Thiobacillus denitrificans ATCC 25259] Length = 846 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 110/386 (28%), Positives = 179/386 (46%), Gaps = 24/386 (6%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVF--- 500 R++E E + ++ E SD + I++ G N A +FG V D + P Sbjct: 220 RQLETERQKYRTLFETNSDAVVILDDHGFT-DCNPATLSMFGIDSVADFVNTPIPRLGTP 278 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKIT--LGSTKEEKLLSLRIIIKKLPFSS--CYSL 556 ++ N S +H I + R T + G + I + + Sbjct: 279 MQANGVSASDHARQTIATA--RSTGHAVMDWQGRRADGTTFFAEIALHAMQLEGRPVIQA 336 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M D+SE + + A++ A + + KS+F+A VSHEIRTP+ I+G S ++ Sbjct: 337 IMRDVSERRAAEAAKEAAREAALQMARAKSEFVANVSHEIRTPMHGILGMSSLLLKT--- 393 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAIS 673 PL + R EY + + S +L I+ND+LD SKIE+GK+ + F PV+L + V ++ Sbjct: 394 PL-DGRQREYVSTLKSSAESLLKIINDILDFSKIEAGKLAIEAVAFSPVALMQGV---VA 449 Query: 674 LVQLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 L Q A EK + + + + P +L D ++QI LN++ NAI FT + + T Sbjct: 450 LFQARALEKNLQLTLALHESPPPALLGDPTRIRQILLNLVDNAIKFTDRDHVELSGSFET 509 Query: 733 SNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 +EV R V D+G+GM+ + F Q +S R GTGLGL ++ + G Sbjct: 510 LGDEVACRFSVTDSGIGMSAETQAGLFQAFSQADSSTTRRYGGTGLGLAISSQLAALMGG 569 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHP 816 + + S P +G+ + L T P Sbjct: 570 ELTVESAPGRGSRFTLSVRLPTTDLP 595 >gi|78223890|ref|YP_385637.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter metallireducens GS-15] gi|78195145|gb|ABB32912.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter metallireducens GS-15] Length = 589 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 107/377 (28%), Positives = 179/377 (47%), Gaps = 41/377 (10%) Query: 437 DVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF-------GY 487 D+ RI ++ + E +L +IL +G+ + + G+I N A LF G Sbjct: 234 DMAARIEQQLERTSAEKNRLDTILRGMGEGLMVTDANGLITLVNPAFLGLFSLNESVEGR 293 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEIL-SLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 + +I R P V+N I+ S D R +EK+TL +E+ +L+ + + Sbjct: 294 HIIEIARHP-----------VLNDAFKAIVASGDER--VEKMTLTMGEEKHVLTHWVPLV 340 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 HDI++ + +N + DF+A VSHE+RTP+T I G+ Sbjct: 341 DNGELQGVVAVFHDITDLTRLENI--------------RRDFVANVSHELRTPVTVIKGY 386 Query: 607 SEVIKNQRFGPLGNP-RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 +E + + +P R ++ I + ++ DLL +S++E+G MNL V + Sbjct: 387 AEALIDGAMET--DPERARKFVGIILSHSERLAALIGDLLTLSQLEAGSMNLEKTTVRPE 444 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + A+ L+Q A K I I S + +LAD ++Q+ +N+L NAI +TP GG I Sbjct: 445 QVAKRAMELLQPKAARKGITIDCSGLSGAQSVLADPGRLEQVLVNLLDNAIKYTPEGGAI 504 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 S N V + V+DTGVG+ +L + + F ++ ++ GTGLGL + K +V Sbjct: 505 SFSAAVKEN-MVRIGVKDTGVGIPPKDLPRIFERFYRVDTARSRDEGGTGLGLSIVKHIV 563 Query: 786 DANMGKFYIFSTPAKGT 802 + G + S P KG+ Sbjct: 564 QLHGGAVGVESEPGKGS 580 >gi|148255785|ref|YP_001240370.1| multi-sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1] gi|146407958|gb|ABQ36464.1| multi-sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1] Length = 772 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 77/252 (30%), Positives = 131/252 (51%), Gaps = 24/252 (9%) Query: 559 HDISE-WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 D++E W+ E+ AE ES KS+FLA +SHEIRTP+ ++G + + + Sbjct: 355 RDVTERWRAEQ---------AEAESRAKSEFLAMMSHEIRTPMNGVLGLASTLLETKL-- 403 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM---NLHFEPVSLDEAVSEAISL 674 +P I SG+ + I+ND+LD+SK+ +GK+ ++ F P +L EAV+ ++ Sbjct: 404 --DPEQRHAVMTIRESGDNLQRILNDILDLSKLNAGKLEFESVDFSPAALVEAVT---AI 458 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + + A K +L+ +P L D+ ++Q+ +N+ SNA+ FT GG I T Sbjct: 459 IGVNAKTKSLLVNADIDPKLPPALKGDVARIRQVLINLASNAVKFTERGGLTIAVACRTR 518 Query: 734 NEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 ++ + RV DTG+G+ + K F Q S R GTGLGL +++ +++ G Sbjct: 519 DDHKATIEWRVSDTGIGIPADRVGKLFTDFAQADASINRRFGGTGLGLAISRRIIEQMGG 578 Query: 791 KFYIFSTPAKGT 802 + S +G+ Sbjct: 579 AIAVSSVQGEGS 590 >gi|311032225|ref|ZP_07710315.1| Signal transduction histidine kinase [Bacillus sp. m3-13] Length = 611 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 103/378 (27%), Positives = 174/378 (46%), Gaps = 35/378 (9%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E E +L S+L +DG+ +R+G I+ N + E +L KP L Sbjct: 260 EGERRKLSSVLSHMTDGVLATDRKGRIILINEPALGMLNVSRETVLNKPIVEVLGIEETH 319 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEWK 565 + ++E SL L + KE +L S II K+ F + +HDI+E Sbjct: 320 SFDQLVSEQESLIL-------DFSTEKEPYILRASNSIIQKETGFINGLITVLHDITE-- 370 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN----P 621 QEK L + +F+A VSHE+RTPLT + + E + + G + P Sbjct: 371 QEKIDL------------ERREFVANVSHELRTPLTTMRSYLEALAD---GAWQDDEIAP 415 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 R+++ ++ +VNDLL +SK++S N + V E ++ I ++ ++ Sbjct: 416 RFLDVTQT---ETERMIRLVNDLLQLSKMDSRDYNFYKNSVDFVEFFNKIIERFEMSKSQ 472 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-THTSNEEVILR 740 K +R S N + D + Q+ NI+SNA+ ++P GG I + + ++++ Sbjct: 473 KVDFVR-SMPNQEVFVSIDTDKITQVLDNIISNAMKYSPEGGTITFTVDIEEAANQILVS 531 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 + D GVG+ +L K + F ++ ++ GTGLGL +AK M+ A+ G + S K Sbjct: 532 ISDQGVGIPKSDLNKIFERFYRVDKARTRMLGGTGLGLAIAKEMIQAHDGDIWASSVEGK 591 Query: 801 GTLIEIIFPLYDTSHPHD 818 GT I P+ + D Sbjct: 592 GTTIYFTLPISEEEQEGD 609 >gi|308067293|ref|YP_003868898.1| signal transduction histidine kinase [Paenibacillus polymyxa E681] gi|305856572|gb|ADM68360.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681] Length = 481 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 83/259 (32%), Positives = 140/259 (54%), Gaps = 15/259 (5%) Query: 566 QEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +++++L AK I E+ S +KSDF+A +SHE+RTPL +II +++I N++ L Sbjct: 208 EQRDELQKAKVILEERAKQLMMASQYKSDFMATMSHELRTPLNSIINLAQII-NEQGKEL 266 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 +Y++ I SG+ +L ++ND+LD+SK+E+G M + EPVS+ E + ++ Sbjct: 267 DEDELDQYSDLIYASGHDLLQLINDILDLSKVEAGHMEIVSEPVSVREIAQVMMMHFEVT 326 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTS--- 733 A +K + IP I +D + V+QI N+LSNA FT G ++ IST H + Sbjct: 327 AKDKNLEFSLKEHEPIPNEIRSDSKRVQQILRNLLSNAFKFTHEGRILLEISTQHLNQKG 386 Query: 734 --NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + V+ V+DTG+G++ + + F Q S + GTGLGL +++ G Sbjct: 387 QEGDWVVFAVKDTGIGISKLQQHVIFEAFQQANGSINRKYGGTGLGLSISRDFSRLLGGF 446 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + S KG+ + P+ Sbjct: 447 IRLESEEGKGSTFSLYLPM 465 >gi|298488282|ref|ZP_07006315.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157221|gb|EFH98308.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 1200 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 79/260 (30%), Positives = 131/260 (50%), Gaps = 7/260 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K+ + +L A ++A + + KS FLA +SHEIRTP+ AIIG E+ Sbjct: 692 DITERKRLEQQLQEAMRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLELECAHALRKGH 751 Query: 620 NP-RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P + ++ A+ RS ++ ++ + LD+++IE+G M L SL I L Sbjct: 752 TPSQGLQVAH---RSATELVALIGESLDLARIEAGGMQLSLTVTSLQALFEGVIELFSAQ 808 Query: 679 ANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A EK + +R F+ L LR ++Q+ N+L NA+ FT G ++ + Sbjct: 809 AREKDLELRLEFSEQAQGDYWLDPLR-LRQVLHNVLGNALKFTRQGSVVLRVAALDDSSR 867 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V + ++D+G G+ ++ +PF Q + G+GLGL + + +V G + S Sbjct: 868 VRIGIQDSGEGIEPERQQQIFQPFTQASDDTAAHYGGSGLGLSITRQLVQLMKGDISLHS 927 Query: 797 TPAKGTLIEIIFPLYDTSHP 816 +P +GTL+ I PL S P Sbjct: 928 SPGEGTLVNIDLPLVRVSEP 947 >gi|238753119|ref|ZP_04614568.1| hypothetical protein yrohd0001_39490 [Yersinia rohdei ATCC 43380] gi|238708669|gb|EEQ00938.1| hypothetical protein yrohd0001_39490 [Yersinia rohdei ATCC 43380] Length = 1195 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 134/256 (52%), Gaps = 13/256 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+E KQ L K A + + KS FLA +SHEIRTP++ I+GF E++ P Sbjct: 686 QDITESKQLMKALQIEKDKAIQANQAKSSFLASMSHEIRTPISTIMGFLELLSTHNQSPN 745 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 I+ A S +L ++ ++LD+ KIESG E V ++ + + + Sbjct: 746 EEKESIQLAY---ASAQHLLGLIGNILDMEKIESGNFEPSPEWVDVELLIESTLRAFEGL 802 Query: 679 ANEKRILIRTSFANNIPR---ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--- 732 A +K+ ++ +F N + + + D ++ +Q+ N LSNAI FT G + + THT Sbjct: 803 AKQKQ--LQLTFVNRLVKGEYLWLDPQAFRQVLSNFLSNAIKFTQQGSIEVRAETHTESA 860 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + ++I+ V DTG G++ E + KPF Q + +Q G+GLGL + + ++ G+ Sbjct: 861 AQTQLIMSVTDTGPGISQEEQQLLFKPFSQTSSGKQ--QTGSGLGLMICRELILRMNGEI 918 Query: 793 YIFSTPAKGTLIEIIF 808 +FS P +GT + ++ Sbjct: 919 KMFSQPGQGTTLTVML 934 >gi|167630809|ref|YP_001681308.1| signal transduction histidine kinase, putative [Heliobacterium modesticaldum Ice1] gi|167593549|gb|ABZ85297.1| signal transduction histidine kinase, putative [Heliobacterium modesticaldum Ice1] Length = 1200 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 75/259 (28%), Positives = 136/259 (52%), Gaps = 9/259 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E K+ +++L+ + A + S KS+F+A +SHEIRTP+ AI+G +E++ + + Sbjct: 625 ERKRVQDELARTRDQALEASRLKSEFVANMSHEIRTPMNAIMGMNELLLETDL----DAQ 680 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 ++A + S +L I+ND+LD SK+E+GKM + L + V ++ + A ++ Sbjct: 681 QRDFAVIVRESAEGLLRIINDILDFSKLEAGKMTIDETEFRLVDTVETIADMLSVGARKR 740 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + + T IP +L D ++Q+ LN+ NA+ FT GG I+ T +LR+ Sbjct: 741 GLALSTFIDPAIPAVLRGDEGRLRQVLLNLGGNAVKFTEQGGVTILITPDDPPGVSLLRL 800 Query: 742 R----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 R DTG+G++ ++ +PF Q S + GTGLGL +++ +++ G+ + S Sbjct: 801 RFEVIDTGIGLSPVARQRLFQPFTQADGSTTRKYGGTGLGLSISRRIIELMGGEIGVESE 860 Query: 798 PAKGTLIEIIFPLYDTSHP 816 +G+ P + P Sbjct: 861 FGRGSTFWFTVPFTAVAKP 879 >gi|146307491|ref|YP_001187956.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina ymp] gi|145575692|gb|ABP85224.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina ymp] Length = 631 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 130/254 (51%), Gaps = 11/254 (4%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E +Q +L A++ +E+ + KSDFLA +SHE+RTP+ ++G ++++ N Sbjct: 239 EQQQAIAELIQAREESEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTSL----NDE 294 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 EYA S +L ++ND+LD S+IE G + L P +L E + ++ + Q A ++ Sbjct: 295 QTEYAALATESTEHLLKVINDILDFSRIERGALELEAIPFNLLELLQGSVQVFQHSAQQR 354 Query: 683 --RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL- 739 ++L+ T + D ++QI +N++ NA+ FT G QI + T ++ +L Sbjct: 355 GLQLLLETQPGLQQLEVRGDPTRIRQILVNLIGNALKFTEEG-QIRVETRWQPLDDQVLW 413 Query: 740 ---RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V D+G+G+ LE F Q S R GTGLGLP+A+ + + G S Sbjct: 414 FTCAVHDSGIGIDAERLEHMFDAFQQADTSISRRYGGTGLGLPIARTLAERMGGTLQAES 473 Query: 797 TPAKGTLIEIIFPL 810 KG++ + PL Sbjct: 474 QLGKGSVFTLEIPL 487 >gi|317057138|ref|YP_004105605.1| histidine kinase [Ruminococcus albus 7] gi|315449407|gb|ADU22971.1| histidine kinase [Ruminococcus albus 7] Length = 402 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 85/262 (32%), Positives = 141/262 (53%), Gaps = 22/262 (8%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y + +I+E K E +K A + +DF++R SH+IRTP+ +IIG + + + + Sbjct: 7 YLAAVKEIAELKGELSK-------ARRNYEAVTDFMSRTSHDIRTPMNSIIGLARLGEEE 59 Query: 614 RFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 G R + EY I S L+I+ D+LD++KIESGK+ L+ SL EA++E I Sbjct: 60 CSG-----RTVKEYFTRIRESAEFQLEILGDVLDMAKIESGKLTLYPAAYSL-EALAENI 113 Query: 673 -SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 S++ A +K I F + ++ D ++QI +N+LSNA+ +TP G+++++ + Sbjct: 114 TSVISPLAEQKGIEFVAEFHDIFADTLMVDKLRLRQILMNLLSNAVKYTPEKGRVVLTVS 173 Query: 731 H--TSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 N +V + V+D G+GM++ KPF Q S +GTGLGL + + +VD Sbjct: 174 QLAAGNGKVRTVFTVKDNGIGMSDEFAANMFKPFTQERTSATAEIQGTGLGLSIVRNLVD 233 Query: 787 ANMGKFYIFSTPAKGT--LIEI 806 G + S GT ++EI Sbjct: 234 LMDGDIRVKSKVGVGTEFMVEI 255 >gi|257060613|ref|YP_003138501.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] gi|256590779|gb|ACV01666.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] Length = 763 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 132/241 (54%), Gaps = 12/241 (4%) Query: 577 IAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVI----KNQRFGPLGNPRYIEYANYID 631 IA + ++H KS+FL+ +SHE+RTPLT IIG S + + PL + +Y I Sbjct: 377 IAAQSANHSKSEFLSNMSHELRTPLTCIIGLSGTLLHWSAQSKSLPLQKQQ--QYLQTIQ 434 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 SG +L+++N++L+ SK+E+GK L + SL +A ++ A +++I ++ Sbjct: 435 DSGKHLLEMINEILEYSKLEAGKYVLSIQQFSLQKAAQNIHKKLRQEAVKRKINLQLELQ 494 Query: 692 NNIPR---ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 P+ AD ++QI ++L+NA+ FTP GG +I+ NE I +V DTG+G+ Sbjct: 495 IE-PQENFFFADPERLQQILYHLLNNALKFTPEGGTVILRIWREGNE-AIFQVEDTGIGI 552 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 ++ + F Q+ S++ GTGLGL L K +V+ + G + S +G++ + Sbjct: 553 AQEQIPLLFESFQQLETSRRRTYGGTGLGLALTKQLVELHGGTIEVESVLQEGSIFTVRL 612 Query: 809 P 809 P Sbjct: 613 P 613 >gi|323483203|ref|ZP_08088594.1| hypothetical protein HMPREF9474_00343 [Clostridium symbiosum WAL-14163] gi|323403476|gb|EGA95783.1| hypothetical protein HMPREF9474_00343 [Clostridium symbiosum WAL-14163] Length = 748 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 89/285 (31%), Positives = 148/285 (51%), Gaps = 23/285 (8%) Query: 555 SLTMHDISEWKQEKNK---LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 +L ++ ++++K + + AK+ AE + KS FL+ +SH+IRTP+ AIIG + + + Sbjct: 327 TLIYFNLYTYRRDKGQYLEIIRAKEEAEAANRAKSMFLSNMSHDIRTPMNAIIGMTRIAR 386 Query: 612 NQRFGPLGNPRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +G+ +E ID S L+L I+ND+LD+SKIE+ K+ L E S+ + Sbjct: 387 EN----IGDGERVEDCLKKIDISSRLLLGIINDVLDMSKIEARKVELAREAFSMGAMIDS 442 Query: 671 AISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQI---I 726 +++ A K++ + N N ++ D + QI +NILSNA+ TP GG+I I Sbjct: 443 NRMIMERQAENKQLTLEFKKTNLNHDAVVGDSVRLSQIIMNILSNAVKCTPEGGRITFEI 502 Query: 727 ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 I T + R + DTGVGM+ + +PF Q + + R +GTGLG+ + K + Sbjct: 503 IELPCTREDSGRYRFVISDTGVGMSEEFQKHIFEPFTQENDYGRSRYKGTGLGMAITKKL 562 Query: 785 VDANMGKFYIFSTPAKGTL--IEIIFPLYD-------TSHPHDCI 820 V+ G + S +GT+ +E+ PL T P D + Sbjct: 563 VELMGGTVEVESRQGEGTVFRVELELPLASQEEVQSGTKEPEDSV 607 >gi|312887251|ref|ZP_07746855.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311300563|gb|EFQ77628.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1187 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 136/236 (57%), Gaps = 7/236 (2%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ + +K++F+A +SHE+RTPL +I+ S + L NP +E A+ I SGN +L Sbjct: 512 EQSTRYKTEFMANMSHELRTPLNSILLLSRYLAENTEQNL-NPDQVESASVILNSGNGLL 570 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI--LIRTSFANNIPR 696 +++++LLD+SKIE+GKM L ++ VS++ +++ SL A EK++ +I+ + I + Sbjct: 571 NLIDELLDLSKIEAGKMELEYQQVSVEGVLNDIKSLFAPIAKEKKLDFIIKNELS-EITQ 629 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VRDTGVGMTNYELE 754 + D ++QI N+LSNA+ FT S GQ+ ++ +L+ V DTG+G+ + + Sbjct: 630 LETDRMRLEQILKNLLSNALKFT-SKGQVSLTLRQPELTGNLLQFAVTDTGIGIPQNKQQ 688 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F Q S + + GTGLGL +++ + G+ + S P KG+ + P+ Sbjct: 689 LVFDAFQQADGSTKRKFGGTGLGLSISRELARLLGGEISLSSEPGKGSEFVLTIPM 744 >gi|289625887|ref|ZP_06458841.1| PAS [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330867533|gb|EGH02242.1| PAS protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 1185 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 79/260 (30%), Positives = 131/260 (50%), Gaps = 7/260 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K+ + +L A ++A + + KS FLA +SHEIRTP+ AIIG E+ Sbjct: 671 DITERKRLEQQLQEAMRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLELECAHALRKGH 730 Query: 620 NP-RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P + ++ A+ RS ++ ++ + LD+++IE+G M L SL I L Sbjct: 731 TPSQGLQVAH---RSATELVALIGESLDLARIEAGGMQLSLTVTSLQALFEGVIELFSAQ 787 Query: 679 ANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A EK + +R F+ L LR ++Q+ N+L NA+ FT G ++ + Sbjct: 788 AREKDLELRLEFSEQAQGDYWLDPLR-LRQVLHNVLGNALKFTRQGSVVLRVAALDDSSR 846 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V + ++D+G G+ ++ +PF Q + G+GLGL + + +V G + S Sbjct: 847 VRIGIQDSGEGIEPERQQQIFQPFTQASDDTAAHYGGSGLGLSITRQLVQLMKGDISLHS 906 Query: 797 TPAKGTLIEIIFPLYDTSHP 816 +P +GTL+ I PL S P Sbjct: 907 SPGEGTLVNIDLPLVRVSEP 926 >gi|168004942|ref|XP_001755170.1| sensory histidine protein kinase [Physcomitrella patens subsp. patens] gi|162693763|gb|EDQ80114.1| sensory histidine protein kinase [Physcomitrella patens subsp. patens] Length = 336 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 128/238 (53%), Gaps = 12/238 (5%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ S KS+FLA +SHEIRTP+ IIG + + E+ + +S + +L Sbjct: 1 EEASRAKSEFLANMSHEIRTPIHGIIGMASLALETDL----TDEQREHLETVAQSADCLL 56 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RI 697 IVN +LD++KIE+G++ L S+ + V+ I ++Q+ AN+K++ + +IP + Sbjct: 57 HIVNAILDLAKIEAGRVELERVQFSVFDTVASTIKMLQVKANQKQLRVSWEVDPDIPAHL 116 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYE 752 + D ++Q +N++ NAI FT G + S T T + ++ V+DTG+G++ + Sbjct: 117 IGDAGRLQQCLINLVGNAIKFTQEGS--LASQTETKVDRDNKVTLLFSVQDTGIGISKEK 174 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 ++ K F Q +S GTGLGL + + +V G+ ++ S P KG+ I L Sbjct: 175 QKEVFKAFSQADSSTTRLYGGTGLGLSIVERLVQMMGGRIWLESEPGKGSTFYFIAQL 232 >gi|294506751|ref|YP_003570809.1| Signal transduction histidine kinase [Salinibacter ruber M8] gi|294343079|emb|CBH23857.1| Signal transduction histidine kinase [Salinibacter ruber M8] Length = 768 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 82/247 (33%), Positives = 122/247 (49%), Gaps = 11/247 (4%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF---GPLGNPRY 623 ++ L AK+ AE+ S KS LA SHE RTPLT+IIGF+E I P+G Sbjct: 505 QEEALRTAKQEAEEASQMKSALLANTSHEFRTPLTSIIGFAEEIATMAEDDDAPIGR--- 561 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 +A++I+ SG +L ++ +L++S+++ G + EP + EA A E Sbjct: 562 --FADHIENSGRRLLGTLDAILNLSRLQGGTLRRPSEPTDMTTVAEEAADQFYPEAVEAD 619 Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 I +RT AN P AD ++ N++SNA+ +T GG + I T +E +L V Sbjct: 620 IALRTE-ANGTPVWTRADPEGLRIALQNLISNAVKYTEPGGDVWIR-VRTGDEAAVLEVE 677 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTGVGM + E +PF Q EGTGLGL + K V+ G + + G+ Sbjct: 678 DTGVGMDPAQTETLFEPFRQESEGMGREYEGTGLGLAVTKEAVEQMGGAIEVETEKGAGS 737 Query: 803 LIEIIFP 809 + P Sbjct: 738 RFTVRLP 744 >gi|158339377|ref|YP_001520554.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158309618|gb|ABW31235.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] Length = 904 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 81/266 (30%), Positives = 135/266 (50%), Gaps = 30/266 (11%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK AE + KS FLA +SHE+RTPL AI+GFS+++ + L + + I Sbjct: 391 LREAKNAAETANQAKSVFLANMSHELRTPLNAILGFSQLLSRDQNLTLEQKQTL---RTI 447 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + SG +L+++ND+L++SKIE+GK++L+ L + + L A +++ + Sbjct: 448 NSSGAHLLNLINDVLEMSKIEAGKVDLNQGQFDLRALLESLFEMFSLKAEARQLRLDFEL 507 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-------------ISTTHTSNEE 736 ++P+ I++D ++Q+ +N+L NAI FT G + +S + NE Sbjct: 508 PPDLPQYIVSDASRLRQVLINVLGNAIKFTEVGSVTLAISTLPLQSVSEQLSDISSENEA 567 Query: 737 VILR------------VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + L V DTGVG+ + EL F Q +Q EGTGLGL +++ Sbjct: 568 ITLEPTLENDTLLQITVTDTGVGIADDELPNLFNLFTQACAGRQ-SFEGTGLGLAISRQF 626 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810 V G ++ S +GT ++I P+ Sbjct: 627 VQLMQGDIHLSSKEGQGTKVQIQIPV 652 >gi|39933394|ref|NP_945670.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] gi|39653019|emb|CAE25761.1| sensor histidine kinase with a response regulator receiver domain [Rhodopseudomonas palustris CGA009] Length = 636 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 78/252 (30%), Positives = 125/252 (49%), Gaps = 5/252 (1%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+ + + L A++ A+ + KS LA SHEIRTPL IIG S ++ + PL Sbjct: 98 DLQPNQSKTRALIAARESADAANHAKSRLLAMASHEIRTPLNGIIGMSRLLLDT---PL- 153 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + YA + SG +L + ++LLD ++IE+GK+ L P L + + I L+ A Sbjct: 154 SAEQATYAKAVKTSGEALLALTDELLDYARIEAGKIELDCRPFVLSSLIEDIIELLAPRA 213 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + + I +P ++ D ++Q+ LN+ NAI FT +GG +I + E+ Sbjct: 214 QARGLEIAADIDERLPVSLIVDAARLRQVLLNLCGNAIKFTETGGVALIVERGDQSGELR 273 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + VRDTG+G+ + F Q GTGLGL ++ +V A G+ + S P Sbjct: 274 IIVRDTGIGIAPDAQARIFHEFEQADAGIARNFGGTGLGLSISDRIVAAMGGRIALESKP 333 Query: 799 AKGTLIEIIFPL 810 +G+ I PL Sbjct: 334 GEGSTFTITLPL 345 >gi|332702022|ref|ZP_08422110.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552171|gb|EGJ49215.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 946 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 82/279 (29%), Positives = 140/279 (50%), Gaps = 28/279 (10%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +I+ ++ + L A+ AE+ + KS FLA +SHEIRTP+ I+G E+ Sbjct: 537 REITSLRRLEEDLRRARDAAEEANRAKSQFLANMSHEIRTPMNGIMGMVELA----LMGC 592 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLV 675 + R EY Y S +LDIVND+LD+SKIE+G+M L F P + E++ ++ Sbjct: 593 KDARSREYLGYAKNSAVNLLDIVNDILDLSKIEAGRMELEKSVFRPREMLESL---FAIQ 649 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A +K + +T N+P R++ D ++QI N++ NA+ +T G + T Sbjct: 650 GSQAEQKGLRFKTHVDPNVPKRLVGDEGRLRQILTNLVGNAVKYTREGEVAVFVTAEVLK 709 Query: 735 EE-------------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 ++ ++ +RDTG+G+ +L + +PF + +Q GTGLGL + Sbjct: 710 QDQEQGEHRRADLVSLVFSIRDTGIGIAPDKLPRIFEPFTR--GAQDAEFGGTGLGLTIT 767 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 K +V+ G+ + ST +G+ + L + P + I Sbjct: 768 KQLVELMNGRIDVRSTLGQGSTFTVSLLL--QTAPKEAI 804 >gi|49473713|ref|YP_031755.1| sensor histidine kinase protein [Bartonella quintana str. Toulouse] gi|49239216|emb|CAF25535.1| Sensor histidine kinase protein [Bartonella quintana str. Toulouse] Length = 814 Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 101/394 (25%), Positives = 192/394 (48%), Gaps = 24/394 (6%) Query: 429 PQNGIEP--EDVDTRIN-KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 PQ G+ E++ +I+ +R+ + L+ S+G+ + +G + +N A+SKL+ Sbjct: 431 PQGGVTWLYENLTEKIDLERRYNTLIKIQGETLDKLSEGVVVFATDGRLRLSNPALSKLW 490 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 P + + +E + + Y + + K G ++ S R+ + Sbjct: 491 SLP--------YNLLVEGTHITQLQSYCSPLTVGKEWDRFTKFITGFAEKRDTYSGRMDL 542 Query: 546 KK--------LPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 K +P + + LT ++++ L + E +++F+ VS+E+ Sbjct: 543 KNGMVIDYTLVPLPNGETMLTFVNVTDTIYVARALQEKNETLESADRLRNEFVQHVSYEL 602 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPLT IIGFS+++++Q FG + N R EY +I + +L+IVND+LD++ +++G M Sbjct: 603 RTPLTNIIGFSDILRDQIFGSI-NERQKEYLGHIHSESSTLLNIVNDILDLATLDAGIME 661 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716 L+ + V++ +A+ +A++ V+ N + I + + ++ I AD + QI +NILSNAI Sbjct: 662 LNIKSVNIADAMVQAVARVEERLNGRHITLLQQISPSLNFISADATRLHQIFVNILSNAI 721 Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 +F I N ++ V + G + L++ K F +S G GL Sbjct: 722 NFATEASTIEFCAEEQDN-NIVFSVHNEGSDIPKDILDRIFKRFS--SHSHHGGRAGAGL 778 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GL L K+ V+ + G I + +GT ++ FP+ Sbjct: 779 GLSLVKSFVELHNGHVEILTGAGQGTTVQCFFPI 812 >gi|225174149|ref|ZP_03728148.1| multi-sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] gi|225169934|gb|EEG78729.1| multi-sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] Length = 587 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 97/362 (26%), Positives = 175/362 (48%), Gaps = 47/362 (12%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L +I+ + ++G+ I+ +G ++ N L D+ K + L Q MN Sbjct: 252 KLENIMLSMNEGVMAIDGQGKVILANPQARSLLKLSETDLTGKEISSLLPQEE---MNQL 308 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK-----QE 567 ++++ + E G K+LSL+I + Y + W Q+ Sbjct: 309 FMDVIASSEVHSAEYQVFGG----KVLSLQI-------APLY----RNNQTWGAVGILQD 353 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 ++ H +++ + DF+A VSHE+RTP+T+I GF E + + E Sbjct: 354 VTEVRHLEQM-------RRDFVANVSHELRTPMTSIQGFVEALLD---------GLAEDK 397 Query: 628 NYIDRSGNLVLD-------IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 DR N++LD +V+DLLD+S++E G++ E + L ++ S +Q Sbjct: 398 ESQDRYLNVILDETVRLNRLVSDLLDLSRLEKGEVGWPMETIELKPLFADVASKLQPQVA 457 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 ++ + + NI + + ++Q+ +N+L NAI FTP GG+I +S ++V ++ Sbjct: 458 KQELSVDIDTPENISAVTGNRDRIQQVLINLLGNAISFTPPGGKITLSAKDV-GDKVEVQ 516 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+G+ E +K + F ++ ++ GTGLGL + K +VDA+ G + STP K Sbjct: 517 VTDTGMGIPPEEQDKIWERFHKVDKARTRSFGGTGLGLSIVKQIVDAHGGDVGLESTPGK 576 Query: 801 GT 802 G+ Sbjct: 577 GS 578 >gi|158337935|ref|YP_001519111.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158308176|gb|ABW29793.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] Length = 684 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 136/250 (54%), Gaps = 9/250 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK A++ + KS+FLA +SHE+RTPL I+G+++++ + + + Sbjct: 195 ELQAAKLEADRANQAKSEFLANMSHELRTPLNGILGYAQILSRSKTLSAEDKNGV---GV 251 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG+ +L ++ND+LD++KIE+GK+ L SL + + + Q+ A +K + Sbjct: 252 ILDSGSHLLSLINDVLDLAKIEAGKLELFPTTTSLPSLLQRVVDICQIKATQKGLQFLYK 311 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGV 746 + ILAD + + Q+ +N++ NAI FT +G QI + ++ +V DTG Sbjct: 312 PSQLPEGILADEKLLSQVLINLIGNAIKFTDAGTVTFQIEVHKGSDGQVSLMFKVIDTGR 371 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +++K + F Q+ + + + EGTGLGL +++ +V G +I S P G+ Sbjct: 372 GIAEEDIDKLFEAFEQVGDHHK-QSEGTGLGLAISQRIVQLMGGTIHINSKPGDGSEFWF 430 Query: 807 I--FPLYDTS 814 I FPL ++ Sbjct: 431 ILDFPLVESG 440 >gi|237712903|ref|ZP_04543384.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262409656|ref|ZP_06086196.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|294643208|ref|ZP_06721035.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294807177|ref|ZP_06765993.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] gi|229447022|gb|EEO52813.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262352509|gb|EEZ01609.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|292641444|gb|EFF59635.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294445628|gb|EFG14279.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] Length = 621 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 84/258 (32%), Positives = 139/258 (53%), Gaps = 23/258 (8%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI++ K+ + L AK+ AE+ KS FLA +SHEIRTPL AI+GFS +++ Sbjct: 381 DITQLKETERMLIGAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSSLLEEAEDAEEK 440 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + +Y I+ + L+L +++D+LD+SKIE+G ++ E V+ + +E +Q+ A Sbjct: 441 H----QYVTIIEENNKLLLQLISDILDLSKIEAGTFDVIPEQVNAQQLCNELFQAMQMKA 496 Query: 680 NEKRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 + ++ A +P ++ ++ + Q+ LN ++NA+ FT S G III N EV Sbjct: 497 TPQ---VKILLAPELPELIFTSNKNRLYQVLLNFVTNALKFT-SEGSIIIDYRINGN-EV 551 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQ----IPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 V+DTG+G+ + E F + IP GTGLGLP+ ++++ GK Sbjct: 552 RFSVKDTGIGIAPEKQEAIFTRFVKLNSFIP--------GTGLGLPICQSIITQLGGKIG 603 Query: 794 IFSTPAKGTLIEIIFPLY 811 + S P KG+ PL+ Sbjct: 604 VESEPGKGSCFWFTHPLH 621 >gi|153832905|ref|ZP_01985572.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio harveyi HY01] gi|148870828|gb|EDL69727.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio harveyi HY01] Length = 859 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 137/263 (52%), Gaps = 17/263 (6%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ + + + + A++ AEK + ++DFLA++SHEIRTP+ I+G ++++K+ Sbjct: 457 QDITTLIEAEKQSNIARREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKD------ 510 Query: 619 GNPRYIEYANYID---RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + E N ID SG +L ++ND+LD SKIE GK N+ P S + + ++ Sbjct: 511 -SVDTQEQKNQIDVLCHSGEHLLAVLNDILDFSKIEQGKFNIQKHPFSFTDTMRTLENIY 569 Query: 676 QLYANEK--RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-- 731 + K ++I N+ I D + QI N++SNA+ FTP+G + + Sbjct: 570 RPICTNKGVELVIENELDPNV-EIFTDQVRLNQILFNLVSNAVKFTPTGSIRLHAELEQF 628 Query: 732 --TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 N +++ + DTG+G+ + +L++ +PF Q + G+GLGL + K +VD Sbjct: 629 YGAENSVLVVELTDTGIGIESDKLDQMFEPFVQEEATTTREYGGSGLGLTIVKNLVDMLE 688 Query: 790 GKFYIFSTPAKGTLIEIIFPLYD 812 G + S+ GT I P+ D Sbjct: 689 GDVQVRSSKGVGTTFVITLPVKD 711 >gi|300867000|ref|ZP_07111670.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300334983|emb|CBN56836.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 1290 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 121/231 (52%), Gaps = 5/231 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +FLA VSHE+R+PL I+G+S +++ Q+ P + + N I R+ L +++ DL Sbjct: 922 KDEFLAIVSHELRSPLNPILGWSTLLQTQKLNPAKTAQAL---NAIARNARLQAELIEDL 978 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+S+I GK++L+ P L + A+ V+L A K I I T F +I +L D + Sbjct: 979 LDLSRILRGKLSLNVFPTDLASTIQSAMETVRLAAEAKSIQIHTMFEPDIGLVLGDSSRL 1038 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +Q+ N+LSNAI FTP GG + I + I+ V DTG G+ L + F Q Sbjct: 1039 QQVMWNLLSNAIKFTPEGGLVDIQLERCGAQAQII-VSDTGKGIDPDFLPYIFEYFRQEN 1097 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTS 814 ++ + G GLGL + +V+ + G S +G + PL +S Sbjct: 1098 SATTRKFGGLGLGLAIVHHLVELHGGTVEAESLGEGQGATFTVKLPLMQSS 1148 Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 65/237 (27%), Positives = 116/237 (48%), Gaps = 7/237 (2%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+++AE + + K+ F + VSHE RTPLT ++G E + + + + I R Sbjct: 344 RAEQLAELDRA-KTVFFSNVSHEFRTPLTLMLGPVE----EALQATQDAQQRDRLELIHR 398 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 + + +VN LLD S+IE+G++ ++P L ++ + + + +R Sbjct: 399 NALRLQKLVNTLLDFSRIEAGRIEAVYQPTDLAMLTTDLAGVFESAIARAGLHLRVDCPP 458 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 D ++I LN+LSNA +T G +I + NE++ L VRDTG+G+ E Sbjct: 459 LPEPTYVDREMWEKIVLNLLSNAFKYTFEGEIAVI--LRSRNEQIELEVRDTGIGIPAEE 516 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L + + F ++ ++ EG+G+GL L + +V + G S +GT + P Sbjct: 517 LPQIFERFHRVQGARGRTYEGSGIGLSLVQELVRLHDGTISASSIVDQGTSFIVSIP 573 >gi|197336880|ref|YP_002157952.1| sensory transduction protein kinase [Vibrio fischeri MJ11] gi|197314132|gb|ACH63581.1| sensory transduction protein kinase [Vibrio fischeri MJ11] Length = 864 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 139/253 (54%), Gaps = 10/253 (3%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I + QE L K AE + KS FLA +SHEIRTPL IIG S+++ P+ + Sbjct: 329 IYSFNQETEYLEIEKSKAEALAKAKSSFLANMSHEIRTPLNGIIGMSDILTETDLTPVQS 388 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 EY ID S +L ++ND+LD+SKIESG + + + +++E + ++++ A Sbjct: 389 ----EYVETIDTSSQTLLLLINDILDLSKIESGNLVIVPQESNVEEVAYDTLTVILSKAT 444 Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 EK + ++ AN++P ++ D ++QI +N++SNA+ FT G +I+S + E Sbjct: 445 EKGLALQIDLANDLPELVMLDEHRLRQILMNLMSNAVKFTQDGA-VILSINYQQKENGRG 503 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V+DTG+G++ + E+ +PF Q +S + GTGLGL + + +V+ G+ + Sbjct: 504 LLFFSVKDTGIGISKDKCEQIFEPFTQEDSSITRQFGGTGLGLAICRQLVEMLGGELKVD 563 Query: 796 STPAKGTLIEIIF 808 S G+ I Sbjct: 564 SEKGFGSKFHFIL 576 >gi|323691353|ref|ZP_08105628.1| hypothetical protein HMPREF9475_00490 [Clostridium symbiosum WAL-14673] gi|323504693|gb|EGB20480.1| hypothetical protein HMPREF9475_00490 [Clostridium symbiosum WAL-14673] Length = 748 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 89/285 (31%), Positives = 148/285 (51%), Gaps = 23/285 (8%) Query: 555 SLTMHDISEWKQEKNK---LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 +L ++ ++++K + + AK+ AE + KS FL+ +SH+IRTP+ AIIG + + + Sbjct: 327 TLIYFNLYTYRRDKGQYLEIIRAKEEAEAANRAKSMFLSNMSHDIRTPMNAIIGMTRIAR 386 Query: 612 NQRFGPLGNPRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +G+ +E ID S L+L I+ND+LD+SKIE+ K+ L E S+ + Sbjct: 387 EN----IGDGERVEDCLKKIDISSRLLLGIINDVLDMSKIEARKVELAREAFSMGAMIDS 442 Query: 671 AISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQI---I 726 +++ A K++ + N N ++ D + QI +NILSNA+ TP GG+I I Sbjct: 443 NRMIMERQAENKQLTLEFKKTNLNHDAVVGDSVRLSQIIMNILSNAVKCTPEGGRITFEI 502 Query: 727 ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 I T + R + DTGVGM+ + +PF Q + + R +GTGLG+ + K + Sbjct: 503 IELPCTREDSGRYRFVISDTGVGMSEEFQKHIFEPFTQENDYGRSRYKGTGLGMAITKKL 562 Query: 785 VDANMGKFYIFSTPAKGTL--IEIIFPLYD-------TSHPHDCI 820 V+ G + S +GT+ +E+ PL T P D + Sbjct: 563 VELMGGTVEVESRQGEGTVFRVELELPLASQEEVQSGTKEPEDSV 607 >gi|94267227|ref|ZP_01290820.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93452082|gb|EAT02766.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 1295 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 132/260 (50%), Gaps = 15/260 (5%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + + +L + E +KS+FLA +SHE+RTPL +I+ S+++ + G L PR Sbjct: 546 ELDRARRELETKARDLETSGRYKSEFLANMSHELRTPLNSILILSQLLAANKEGNL-QPR 604 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +E+AN I SG+ +L ++N++LD+SKIE+G+M ++ + V L E + + Q A + Sbjct: 605 QLEFANTIHNSGSDLLHLINEVLDLSKIEAGRMEINPDTVELKEMIDSLLGPFQAQAEQN 664 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----- 736 + + P I D ++QI N+LSNA+ FT G+I + + E Sbjct: 665 GLRLSGEITPEAPATIFTDETRLRQILKNLLSNALKFTQQ-GEITLRCGRPARAELPTGL 723 Query: 737 -------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 V V D+G+G+ +LE + F Q + + GTGLGL +++ + Sbjct: 724 RLVPERAVYFAVSDSGIGIAADKLEVVFEAFKQADGTTSRKFGGTGLGLSISRQLARLLG 783 Query: 790 GKFYIFSTPAKGTLIEIIFP 809 G+ + S +GT + P Sbjct: 784 GELSVSSCEGEGTTFTLWLP 803 >gi|307299069|ref|ZP_07578871.1| multi-sensor hybrid histidine kinase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915494|gb|EFN45879.1| multi-sensor hybrid histidine kinase [Thermotogales bacterium mesG1.Ag.4.2] Length = 935 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 126/250 (50%), Gaps = 7/250 (2%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + K L K A++ S KS+FLA +SHE+RTP+ AI+GF+E++ N N Sbjct: 312 LDRLKNSNEMLRKVSKEAQQASKMKSEFLANMSHEMRTPMNAILGFAELLMNDE----TN 367 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 ++Y I RSG +L ++ND+LD+SKIE+ + +L P S + V E A Sbjct: 368 LEKMKYLKTIYRSGEHLLSLINDVLDLSKIEAARFDLIISPYSPAKLVKEITETYLPMAY 427 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K + S +P + D V+Q+ N++SN + FT G ++ +I Sbjct: 428 SKGLHFANSITERVPEYVDGDEFRVRQVLTNLVSNGLKFTDKGYVSVL--LDYDGHHLIY 485 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V+DTG G++ E++K +PF Q + + GTGLGL + K +V+ G S Sbjct: 486 TVQDTGSGVSREEIDKIFEPFIQADGTMSRKFGGTGLGLTITKKIVELMGGSIRFESKVG 545 Query: 800 KGTLIEIIFP 809 +G+ + + P Sbjct: 546 EGSKVTVRIP 555 >gi|237704694|ref|ZP_04535175.1| sensory histidine kinase AtoS [Escherichia sp. 3_2_53FAA] gi|226901060|gb|EEH87319.1| sensory histidine kinase AtoS [Escherichia sp. 3_2_53FAA] Length = 612 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 94/398 (23%), Positives = 189/398 (47%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 233 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 292 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 293 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 345 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 346 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 400 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q P+ + EY + + + + + ++ LL+ S+ Sbjct: 401 AHEVRNPLTAIRGYVQILRQQTRDPI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 456 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 457 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL 512 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 513 INAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLSLQKKIFDPFF------TTKAS 566 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G F + S P G +I P+ Sbjct: 567 GTGLGLALSQRIINAHQGDFRVASLPGYGATFTLILPI 604 >gi|254785978|ref|YP_003073407.1| fog: ggdef domain containing protein [Teredinibacter turnerae T7901] gi|237684430|gb|ACR11694.1| putative fog: ggdef domain containing protein [Teredinibacter turnerae T7901] Length = 718 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 85/257 (33%), Positives = 138/257 (53%), Gaps = 8/257 (3%) Query: 561 ISEW-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 I+ W Q ++L A AE + K+ FLA++SHE RTPL +IIGFS ++++ + Sbjct: 454 IAFWFNQRSSQLEVALTEAETANRAKTAFLAKMSHEFRTPLNSIIGFSRRLQDKLKHQVD 513 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 Y E I +G+ +L +VND++D++ IESG + L S++E + EA++ Q+YA Sbjct: 514 EFHY-EAIRRIHTNGHHLLALVNDIIDMTAIESGGVKLRAHEESVNELLQEAVAECQIYA 572 Query: 680 NEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV 737 + L++ A ++ I+ D V QI +N+LSNA+ T G Q+ + E + Sbjct: 573 ERSDVRLVKKELAVDVL-IVCDRNKVVQILVNLLSNALKATRRGSVQLSVKQLLEDREHI 631 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFS 796 V DTG+G++ + +K K F Q+ + +I E GTGLGL L + V + G + S Sbjct: 632 YFEVVDTGIGISEQDQQKLFKKFSQLES--RIGSERGTGLGLFLVREFVKMHGGSVDLTS 689 Query: 797 TPAKGTLIEIIFPLYDT 813 GT + P+ T Sbjct: 690 ELGVGTTFTVKLPVKQT 706 >gi|116696286|ref|YP_841862.1| signal transduction histidine kinase [Ralstonia eutropha H16] gi|113530785|emb|CAJ97132.1| signal transduction histidine kinase containing a receiver domain (hybrid) [Ralstonia eutropha H16] Length = 668 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 82/236 (34%), Positives = 126/236 (53%), Gaps = 15/236 (6%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E S FLA ++HE+R PL A+ EVI+ P + R A IDR + + Sbjct: 301 EAGSRRLQSFLAILAHELRNPLAAVRNAVEVIE---LTPDADTRVRRCAGIIDRQLHQLE 357 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ--LYANEKRILIRTSFANNIPR 696 +VNDLLD+ ++ +GK+ + P S ++ V+ +I ++ L A +R+++ + + P Sbjct: 358 RLVNDLLDVGRVTAGKLKMELTPTSYNDVVTTSIEAIRPVLEAAGQRLVL--ALPASSPY 415 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--EVILRVRDTGVGMTNYELE 754 + AD + Q+ LN+LSNA+ +TP GG I + H S E VI V DTG G+ L+ Sbjct: 416 VRADAARLGQVLLNLLSNAVKYTPRGG---IVSVHVSVESARVITAVSDTGRGLAPAALD 472 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA-KGTLIEIIFP 809 + F Q + RG G G+GL LAKA+V+A+ G S A KG+ +I P Sbjct: 473 RIFDLFAQEAGAGS-RG-GLGIGLALAKAVVEAHGGAIQADSGGAGKGSTFTVILP 526 >gi|284041262|ref|YP_003391192.1| histidine kinase [Spirosoma linguale DSM 74] gi|283820555|gb|ADB42393.1| histidine kinase [Spirosoma linguale DSM 74] Length = 1418 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 86/268 (32%), Positives = 136/268 (50%), Gaps = 28/268 (10%) Query: 565 KQE-KNKLSHAKKIAEKE---SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 KQE KN+L+ + EKE + K F VSHE+RTPLT I+G E + + GPL Sbjct: 857 KQELKNRLALEQYKVEKEKEVTDTKLRFFTNVSHELRTPLTLILGPLEELASAGSGPLYQ 916 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + + + + +LD+VN L+D K+E+G + L ++ + E + + +L A Sbjct: 917 AK--DKVMLMHQQTRKLLDLVNQLMDFRKVEAGHVTLRASQGNMMAFLMEIVLIFKLKAE 974 Query: 681 EKRILIRTSFANNIP----RILADLRSVKQIALNILSNAIHFTPSGGQI--IISTTHTSN 734 E ++ +A P + D V+ I N+LSNA FTP GG+I ++S + + Sbjct: 975 E----LQLDYAMEAPATDINMYFDRGKVEIILTNLLSNAFKFTPEGGKIRVLVSVIGSPS 1030 Query: 735 EEVI------------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 E + L VRD GVGM + E++K P+ Q +++ +R GTG+GL L K Sbjct: 1031 EPAVFHGNRLHTNYLELVVRDWGVGMNSDEVDKIFDPYYQASHTETMRMTGTGIGLSLVK 1090 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPL 810 V+A+ G+ + S P GT + P Sbjct: 1091 QFVEAHRGEVSVQSAPGAGTTFTLRLPF 1118 >gi|229590478|ref|YP_002872597.1| putative two-component system histidine kinase/response regulator fusion [Pseudomonas fluorescens SBW25] gi|229362344|emb|CAY49246.1| putative two-component system histidine kinase/response regulator fusion [Pseudomonas fluorescens SBW25] Length = 1184 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 74/250 (29%), Positives = 134/250 (53%), Gaps = 7/250 (2%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN-- 620 E Q + +L + ++ S +KS+FLA +SHE+RTPL + + ++++ P N Sbjct: 491 ELNQAQLELEDRAEELQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAE---NPQENLS 547 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 +++A I +GN +L+++ND+LDISK+E+GK+ + E S+ V + + A Sbjct: 548 AEQVKFAESIYSAGNDLLNLINDILDISKVEAGKLEVRPENSSVARLVDGLRGMFEPLAA 607 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 ++++ + P +L D + ++QI N+LSNAI FT G + +S + E + Sbjct: 608 DRKLGFQVDVQEGSPTMLFTDRQRLEQILKNLLSNAIKFTEQG-DVSLSVSRAPGEGIAF 666 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 VRD+G+G+ + E + F Q + R GTGLGL +++ + G + S P Sbjct: 667 TVRDSGIGIAPDQQESIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGYISVASEPG 726 Query: 800 KGTLIEIIFP 809 KG++ ++ P Sbjct: 727 KGSIFTLVLP 736 >gi|224539076|ref|ZP_03679615.1| hypothetical protein BACCELL_03976 [Bacteroides cellulosilyticus DSM 14838] gi|224519321|gb|EEF88426.1| hypothetical protein BACCELL_03976 [Bacteroides cellulosilyticus DSM 14838] Length = 435 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 86/257 (33%), Positives = 134/257 (52%), Gaps = 13/257 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I E K+ ++ L AK AE+ + K+ FLA +SHEIRTPL AI+GFS ++ + + Sbjct: 178 IDERKKLESDLRKAKDKAEEANRLKTAFLANMSHEIRTPLNAIVGFSSILADTE--DIAE 235 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + E+ N I+ + L+L IV+D+LDISKIE+G ++LH L + + E+ + ++ A Sbjct: 236 KK--EFCNLINHNNALLLKIVDDILDISKIEAGYIDLHPTWFCLSDLIMESATEYRMKA- 292 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-L 739 R+ IR D + VKQI N LSNA+ T G I T+ E+ I + Sbjct: 293 AGRLDIRIHKPGQGYMAELDTKRVKQILNNFLSNALKHTQEG---YIDITYGVTEQGIEI 349 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 +V DTG G+ +L + F ++ + Q G GLGLP+ K++ + G + S Sbjct: 350 KVTDTGCGIPQDKLPVIFERFEKVDSFTQ----GVGLGLPICKSIAECMGGSIGLTSEAG 405 Query: 800 KGTLIEIIFPLYDTSHP 816 GT + + P P Sbjct: 406 VGTTVWVTLPCSTAPTP 422 >gi|242278251|ref|YP_002990380.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242121145|gb|ACS78841.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 542 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 83/273 (30%), Positives = 141/273 (51%), Gaps = 12/273 (4%) Query: 544 IIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 +++K P S Y + D++E K+ +L AK+ AE S KS+FLA +SHEIRTPL Sbjct: 131 VMQKNPDGSKYMYCIDVDLTETKKAHRQLIQAKEQAESASRAKSEFLANMSHEIRTPLNG 190 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 ++G +++K+ P + +EY + +++D+LD+S++E+GK+ + P Sbjct: 191 VLGMLQLLKS---AP-EKEKQLEYIELAVTGVKRLTTLLSDILDLSRVEAGKLAVDPAPF 246 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPS 721 L E + L + A +K + + S I ++ D ++Q+ NI+SNAI FT + Sbjct: 247 DLLELMQNLTDLYRPSAQQKGLKLNLSLHPTTITKLTGDSSRLQQVLTNIISNAIKFT-N 305 Query: 722 GGQIIIST-----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 G I + T T +++ V DTG G+ + ++E+ PF Q+ Q +G GL Sbjct: 306 DGIIKVETYPLPHTTAGTTKILFSVSDTGPGIPDSKMEELFSPFIQLSEGYQRTHQGAGL 365 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GL + K +V+ G I S GT + + P Sbjct: 366 GLSICKQLVELMGGNISIESELGIGTTVYLCIP 398 >gi|222053126|ref|YP_002535488.1| multi-sensor signal transduction histidine kinase [Geobacter sp. FRC-32] gi|221562415|gb|ACM18387.1| multi-sensor signal transduction histidine kinase [Geobacter sp. FRC-32] Length = 516 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 95/402 (23%), Positives = 182/402 (45%), Gaps = 65/402 (16%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK--------LFGYPVEDILRK 495 +++++ E ++ ++L+ +D + ++ EG I++ N + L G PVE+ LR Sbjct: 132 QQQLDEERQKMEAVLQGMADLLLAVDPEGRIITVNLKSEQVLGLNRDQLLGMPVEEALRA 191 Query: 496 -------PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 P V L P + +Y + + + + L + + S+ II Sbjct: 192 DIAAESIPCRVVLRSGQPCLDVYYTIQAETAAIPVSSSASPLFNASGQLTGSVEII---- 247 Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 DIS +K + + K DF++ +SH+++ P+TA++G + Sbjct: 248 ----------RDISAYKALEQE--------------KEDFVSMLSHDLKAPITAVVGSVD 283 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 +++ R GP+ N EY S ++++++ LL + K E+GKM +HF+ + + Sbjct: 284 LVREGRLGPV-NEDQREYLESSMESCAEMVEMIDTLLGVHKFEAGKMLMHFKEEMPSQLI 342 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 ++ A ++ + + +++P I AD + ++ N++SNA+ FT GG+I IS Sbjct: 343 QRTMTRFLTVARRAQLRLFATVQDHLPAISADRATFSRLLGNLISNALKFTAEGGEIEIS 402 Query: 729 TTHTSNEEVI---------------------LRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 ++ E I + VRDTG G+ LE F Q N + Sbjct: 403 AVAVNDPETIRGKIPARYGAQKLTLDKPMVQITVRDTGEGIAEDSLEDIFDRFVQARNRR 462 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q + GTGLGL + ++DA+ G + S +G+ ++FP Sbjct: 463 QGKSSGTGLGLTFCRKVMDAHQGFIWAESIVGRGSRFIMLFP 504 >gi|327482523|gb|AEA85833.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri DSM 4166] Length = 1170 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 125/232 (53%), Gaps = 3/232 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ S +KS+FLA +SHE+RTPL + + ++++ + G L + +++A I +GN +L Sbjct: 486 QRASRYKSEFLANMSHELRTPLNSSLILAKLLADNPAGNLSEEQ-VQFARSIYSAGNDLL 544 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRI 697 ++ND+LDISK+E+GK+ +H E L V SL A EK + A+++ P + Sbjct: 545 TLINDILDISKVEAGKLEVHPELTILARLVDGMKSLFLPQAMEKALSFSVELADDLPPTL 604 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + ++QI N+L+NA FT G + + + VRDTG+G+ + Sbjct: 605 FTDRQRLEQILKNLLANAFKFTEKGS-VTLRVEPRDGGMLAFAVRDTGIGIAPEQQAAIF 663 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q + R GTGLGL +++ + + G+ + S P G+ ++ P Sbjct: 664 EAFRQADGTTNRRYGGTGLGLSISRELANLLGGQIEVQSAPGAGSTFTLVLP 715 >gi|295109684|emb|CBL23637.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162] Length = 850 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 83/257 (32%), Positives = 136/257 (52%), Gaps = 21/257 (8%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV----IKNQRFGPLGNP 621 + + L A + AE + K++FL+ +SH+IRTP+ AI+G + + I++Q Sbjct: 540 ESRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMNAIVGLTAIAGANIESQ-------D 592 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 R IE I S +L ++N++LD+++IESGKM L E +L E V I+L Q +E Sbjct: 593 RVIECLGKITESSRHLLGLINEVLDMARIESGKMTLAQEDFNLSELVDNLITLTQPVLDE 652 Query: 682 KRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + N+I + D ++Q+ +N++SNAI +TP GG II S N L Sbjct: 653 HKHNFDIHI-NHIEHEDVCGDSLRIQQVFVNLMSNAIKYTPDGGNIIFSIEEKPNGFSEL 711 Query: 740 -----RVRDTGVGMTNYELEKAM-KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + D G+GM+ E +K M PF + + + R +GTGLG+ +++ +V+ G Sbjct: 712 GCYEFTIEDDGIGMSP-EFQKIMFDPFSRADDHRTTRVQGTGLGMAISRNIVNLMNGNIK 770 Query: 794 IFSTPAKGTLIEIIFPL 810 + ST +GT I + L Sbjct: 771 VDSTLHQGTKITVTIYL 787 >gi|254784795|ref|YP_003072223.1| two-component hybrid sensor and regulator [Teredinibacter turnerae T7901] gi|237684045|gb|ACR11309.1| putative two-component hybrid sensor and regulator [Teredinibacter turnerae T7901] Length = 975 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 136/252 (53%), Gaps = 8/252 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ ++L + + E+ + K++FLA V+HE+RTPL ++IGFS V+ R + Sbjct: 307 ELQERTHELLKSHRSLEESNRFKTEFLASVTHELRTPLNSVIGFSRVLLKSRSNEQSSKE 366 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + I R+ +L ++ND+LD+SKIE+G + L L + + E +++ A++K Sbjct: 367 H-RAVEAIFRNSTHLLGVINDILDLSKIETGSITLEKSEFLLSDVIQEVFEMLEPLADKK 425 Query: 683 RILIR-TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----V 737 ++ + ++A N+ R+++D+ ++Q+ +N+ SNA+ +T G ++I +EE V Sbjct: 426 QLTFQLLNYARNL-RLVSDMAKLRQVLINLCSNAVKYTER-GSVVICIERADHEELGEVV 483 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + VRDTG+G+ E K F + + EGTGLGL ++ +V G S Sbjct: 484 KISVRDTGIGIEESEKNKLFVEFSRTEAAINSGAEGTGLGLMISAKLVQVLGGAIDFDSE 543 Query: 798 PAKGTLIEIIFP 809 G+ + FP Sbjct: 544 FGVGSEFRVCFP 555 >gi|88797952|ref|ZP_01113539.1| sensor/response regulator hybrid [Reinekea sp. MED297] gi|88779149|gb|EAR10337.1| sensor/response regulator hybrid [Reinekea sp. MED297] Length = 951 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 132/237 (55%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A++ A++ + K++FLA +SHEIRTPL IIGF+ ++ + +Y + Sbjct: 268 ELDMARREAQQANQVKTEFLANMSHEIRTPLNGIIGFARLLARSNL----TKKQEDYIST 323 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I S ++L I+ND+LD KIE+GK+ L +L E++ E ++++ ++ K + + + Sbjct: 324 IMSSSQVLLTIINDVLDFCKIEAGKLMLDNRSTNLRESIEEVLTMLDPASSAKNLEVVSL 383 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTG 745 F ++P +++ D +KQ+ N++SNAI FT G +I I + V + V DTG Sbjct: 384 FFADVPEQLVFDPLRLKQVLTNLISNAIKFTNEGSVVIRTMIEQQQGNKVTVRVSVTDTG 443 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++ + + + F Q +S GTGLGL ++K +V+ G + S +G+ Sbjct: 444 IGLSKTQQKALFQAFAQADSSTAREFGGTGLGLVISKRLVEQMGGDIGLESKKDEGS 500 >gi|125974817|ref|YP_001038727.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] gi|256004926|ref|ZP_05429899.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium thermocellum DSM 2360] gi|281418729|ref|ZP_06249748.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum JW20] gi|125715042|gb|ABN53534.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] gi|255991106|gb|EEU01215.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium thermocellum DSM 2360] gi|281407813|gb|EFB38072.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum JW20] gi|316941937|gb|ADU75971.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum DSM 1313] Length = 600 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 137/254 (53%), Gaps = 19/254 (7%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 +HDI+E + KL + +K +F+A VSHE+RTPLT+I ++E + + G Sbjct: 361 VLHDITE----QQKLENMRK----------EFVANVSHELRTPLTSIKSYAETLLD---G 403 Query: 617 PLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 L + ++ + I+ + + +V DLL +S++++ +M + +S ++ V + V Sbjct: 404 ALEDRELAGKFLSVINSEADRMTRLVKDLLQLSRLDNNQMKWDMQKISFEDLVRNCVEKV 463 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + + EK + I+AD ++Q+ LNIL+NAI +TP GG+I + + Sbjct: 464 KFESEEKNQTLECFTIGEELEIVADKDRMEQVVLNILTNAIKYTPEGGKITVYIGRMYS- 522 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 EV ++V D+G+G+ +L + + F + ++ GTGLGL +AK +V+A+ G + Sbjct: 523 EVYVKVVDSGIGIPREDLGRIFERFYRTDKARSREMGGTGLGLAIAKEIVEAHKGSISVA 582 Query: 796 STPAKGTLIEIIFP 809 S P KGT + + P Sbjct: 583 SEPGKGTEVTVKLP 596 >gi|330508892|ref|YP_004385320.1| histidine-protein kinase [Methanosaeta concilii GP-6] gi|328929700|gb|AEB69502.1| histidine-protein kinase [Methanosaeta concilii GP-6] Length = 925 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 129/223 (57%), Gaps = 10/223 (4%) Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 S+FL +SHEIRTP+ AIIG + +++ P ++ + I +SG+ +L I++D+L Sbjct: 413 SNFLDNMSHEIRTPMNAIIGMARLLQGTDI----KPEQRDFLDTIQKSGSALLAIIDDIL 468 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSV 704 D SKI+ KM L P L + +++ LV + A+EK + + N++P RI+ D+ + Sbjct: 469 DYSKIDGDKMELVNVPFDLQICIEDSLDLVAIKASEKGLELAYLLENDVPKRIVGDVNRL 528 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVILR--VRDTGVGMTNYELEKAMKP 759 +Q+ +N+L NA+ FT G ++ ++ S+++V L VRDTG+G++ + + Sbjct: 529 RQVLVNLLGNAVKFTDRGDVVLKVSSRRLEGSDDKVELHFAVRDTGIGISPENQSELFQS 588 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 F Q+ +S+ GTGLGL +++ +V+ G+ + S G+ Sbjct: 589 FTQVDSSKTRSYGGTGLGLAISRGIVERMGGRIWAESEIGTGS 631 >gi|295660700|ref|XP_002790906.1| two-component sensor protein histidine protein kinase [Paracoccidioides brasiliensis Pb01] gi|226281158|gb|EEH36724.1| two-component sensor protein histidine protein kinase [Paracoccidioides brasiliensis Pb01] Length = 2331 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 87/306 (28%), Positives = 148/306 (48%), Gaps = 39/306 (12%) Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW--------KQEKNKLSHAK------KI 577 S + L+ LR++ ++ S + + S+ + +K L+HA+ K+ Sbjct: 1744 SFTQRNLVVLRLVCNQIGISLANAFLYRNASKVSAANAAMVEAQKRALAHAREAERKSKV 1803 Query: 578 AEKESSH-----------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 AE E+ H KS FLA VSH++RTP+ +IG +E++K N Y Sbjct: 1804 AEAEAKHNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLTELLKKTNLDREQNG----Y 1859 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I + +L ++ND+LD SK+E+GKM + P++L + + EA+ + + + Sbjct: 1860 VESIRVCADTLLTLINDILDFSKLEAGKMKVAAIPLNLRDTIMEAVRALCFTHRHRGLQT 1919 Query: 687 RTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VIL 739 P +L D + QI +N+LSN+ FTP G + + S+EE + Sbjct: 1920 IEDLDELDPNLLVMGDPVRLHQIFMNLLSNSYKFTPQGS--VTVKANASDEEDGRIRITC 1977 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTP 798 +V DTG+G+ +L + +PF Q +S G+GLGL + KA++ D GK ++ S Sbjct: 1978 KVVDTGIGIPGEQLVRLFRPFSQADSSSARSFGGSGLGLSICKAIIEDVLGGKIWLQSEE 2037 Query: 799 AKGTLI 804 GT + Sbjct: 2038 GVGTTV 2043 >gi|218248058|ref|YP_002373429.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] gi|218168536|gb|ACK67273.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] Length = 763 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 132/241 (54%), Gaps = 12/241 (4%) Query: 577 IAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVI----KNQRFGPLGNPRYIEYANYID 631 IA + ++H KS+FL+ +SHE+RTPLT IIG S + + PL + +Y I Sbjct: 377 IAAQSANHSKSEFLSNMSHELRTPLTCIIGLSGTLLHWSAQSKSLPLQKQQ--QYLQTIQ 434 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 SG +L+++N++L+ SK+E+GK L + SL +A ++ A +++I ++ Sbjct: 435 DSGKHLLEMINEILEYSKLEAGKYVLSIQQFSLQKAAQNIHKKLRQEAVKRKINLQLELQ 494 Query: 692 NNIPR---ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 P+ AD ++QI ++L+NA+ FTP GG +I+ NE I +V DTG+G+ Sbjct: 495 IE-PQENFFFADPERLQQILYHLLNNALKFTPEGGTVILRIWREGNE-AIFQVEDTGIGI 552 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 ++ + F Q+ S++ GTGLGL L K +V+ + G + S +G++ + Sbjct: 553 AQEQIPLLFESFQQLETSRRRTYGGTGLGLALTKQLVELHGGTIEVESILQEGSIFTVRL 612 Query: 809 P 809 P Sbjct: 613 P 613 >gi|218246325|ref|YP_002371696.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] gi|218166803|gb|ACK65540.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] Length = 1002 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 82/254 (32%), Positives = 139/254 (54%), Gaps = 20/254 (7%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 +EK + ++A +A KS FLA++SHE+RTPL AI+GF++++ R L + + E Sbjct: 517 EEKTRQANAANLA------KSQFLAKMSHELRTPLNAILGFTQMMN--RDSSLSSQQQ-E 567 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y I+RSG +L ++ND+L++S+IE+G++ L+ +L E + L+ L A K + Sbjct: 568 YLGIINRSGEHLLSLINDVLEMSRIEAGQLTLNQTCFNLHELIKSVKELLTLKALSKGLE 627 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHTSNEEVIL 739 + +P+ I D ++QI +N++ NAI FT G ++ +T + L Sbjct: 628 LTVHQDEELPKYIEGDESKLRQIIVNLVGNAIKFTHVGHIDLYLSVLSHQPYTKEMMLQL 687 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V+DTG+G+ ELE + F Q N+ Q + EGTGLGL +++ G + S Sbjct: 688 EVKDTGIGINQDELETIFEAFKQTENNFQSK-EGTGLGLSISRQFARLMGGDITVQSQLG 746 Query: 800 KGT----LIEIIFP 809 +G+ I++I P Sbjct: 747 QGSTFTCTIKMIMP 760 >gi|88859894|ref|ZP_01134533.1| sensor histidine kinase/response regulator [Pseudoalteromonas tunicata D2] gi|88817888|gb|EAR27704.1| sensor histidine kinase/response regulator [Pseudoalteromonas tunicata D2] Length = 903 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 74/219 (33%), Positives = 126/219 (57%), Gaps = 6/219 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTP+T+IIG+++ I P + + ++ I ++GN VL I+ND+ Sbjct: 427 KSRFLANMSHEIRTPMTSIIGYADGIILGDIEPRNHAKAVQV---IAQNGNHVLGIINDI 483 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703 LD+SKIE+ K+ + + L ++ S++ +K + + + +P +I+ D Sbjct: 484 LDMSKIEANKLEVEWIETDLFATIANVESILGKQIRDKGLEFKVLYEFPLPNKIIIDPTR 543 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 ++QI LN+ +NA+ FT G +I + +E++I+RVRD+G+GMT + +K + F Q Sbjct: 544 LRQILLNLTNNAMKFTDYGAITLIVSF--KDEKLIIRVRDSGIGMTKEQTQKLFEAFSQA 601 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 S + GTGLGL ++K + G + S KG+ Sbjct: 602 DTSTTRKYGGTGLGLNISKNLAHKLGGDISVKSEIGKGS 640 >gi|330971298|gb|EGH71364.1| response regulator receiver [Pseudomonas syringae pv. aceris str. M302273PT] Length = 1172 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 128/240 (53%), Gaps = 3/240 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ S +KS+FLA +SHE+RTPL + + ++++ + G +++A I +GN +L Sbjct: 488 QRASKYKSEFLANMSHELRTPLNSSLILAKLLA-ENPGENLTAEQVKFAESIYSAGNDLL 546 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++ND+LDISK+E+GK+ + E S+ V +L Q A EK++ P +L Sbjct: 547 NLINDILDISKVEAGKLEMRPENSSVSRLVEGLRTLFQPLAAEKKLAFTVDIQAGAPTML 606 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + ++QI N+LSNAI FT +G + + + + VRD+G+G+ + Sbjct: 607 FTDRQRLEQILKNLLSNAIKFTEAGS-VSMVVSRQPGAGIAFIVRDSGIGIAEEHQQGIF 665 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 + F Q + R GTGLGL +++ + G + S P +G++ ++ P + H Sbjct: 666 EAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLPEHYVEQDH 725 >gi|291523435|emb|CBK81728.1| Signal transduction histidine kinase [Coprococcus catus GD/7] Length = 731 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 82/256 (32%), Positives = 134/256 (52%), Gaps = 17/256 (6%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN-PRY 623 K+ KN + A + AE + K+DFL+ +SH+IRTP+ AIIG + +I++ GN + Sbjct: 306 KKAKNVATEALQTAENANKAKTDFLSNMSHDIRTPMNAIIGITSLIRHDA----GNKAKV 361 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV--QLYANE 681 IEYA+ ID S +L I+ND+LD+SKIE+GK + S+ + V E ++ Q+Y + Sbjct: 362 IEYADKIDISSQHLLGIINDVLDMSKIEAGKTVFKYSDFSILDLVQELNTIFHSQIYEKQ 421 Query: 682 KRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI- 738 + + I NI + D + QI N+LSNA+ +T GG+I + + Sbjct: 422 QTLTI---IKENIQHEWVNGDQVHLMQIFSNLLSNAVKYTQEGGEIQFFVEECETKSSVY 478 Query: 739 ----LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V D G+GM+ + F + S + +GTGLG+ + K +V+A G + Sbjct: 479 AKYRFLVSDNGMGMSADFKDTIFDAFTRAERSLTNKIQGTGLGMAITKNLVEAMGGTIDV 538 Query: 795 FSTPAKGTLIEIIFPL 810 S +G+ E++ L Sbjct: 539 DSELGQGSCFEVLLDL 554 >gi|260894821|ref|ZP_05903317.1| histidine kinase [Vibrio parahaemolyticus Peru-466] gi|308089386|gb|EFO39081.1| histidine kinase [Vibrio parahaemolyticus Peru-466] Length = 632 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 129/254 (50%), Gaps = 8/254 (3%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + + ++ + +L + AE + KS+FLA +SHEIRTP IIG + ++ + + + Sbjct: 220 VQKVREHQAELEAERDKAEVANRKKSEFLATMSHEIRTPTNGIIGVASLLSDTKL----D 275 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P+ E+ ID S ++ I++D+LD SK+E+GK+ L E + + + ISL + A Sbjct: 276 PQQKEFVEIIDNSSQSLMTIIDDILDFSKVEAGKVELASETYHFRQLLDDVISLHTVKAQ 335 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EE 736 +K + + + +P + D +KQ+ N+LSNA+ FT G ++ + H N + Sbjct: 336 QKNLQLLSDIDPKLPAEVQGDEGRLKQVLNNLLSNAVKFTERGHVKLLVSLHEQNNDIAQ 395 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V RV D+G+G+ + + F Q S + GTGLGL + +V G + S Sbjct: 396 VRFRVVDSGIGIAKEHQQAVFERFQQADGSTTRKYGGTGLGLAICAQLVHIMGGDIKLTS 455 Query: 797 TPAKGTLIEIIFPL 810 G+ + PL Sbjct: 456 ELGLGSCFDFTIPL 469 >gi|172039202|ref|YP_001805703.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171700656|gb|ACB53637.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 864 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 83/243 (34%), Positives = 131/243 (53%), Gaps = 10/243 (4%) Query: 564 WKQEKNK---LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 +KQ +N+ L AK AEK + KS+FLA +SHE+RTPL AI+G+ +++ R L + Sbjct: 383 FKQTQNQAEELELAKIAAEKANHAKSEFLASMSHELRTPLNAILGYVQLML--RSTSLSS 440 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + I+ SG +L ++ND+L++SKIE+G++ L L + E +L+QL A Sbjct: 441 D-HRNNLQTINDSGEHLLGLINDVLEMSKIEAGQIVLKETDFDLYHLLDELETLLQLKAT 499 Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K++ + +P+ I D + ++Q+ +NI+ NAI FT G + + Sbjct: 500 IKQLSLSFIRDCTVPQYIRTDEKKLRQVLINIIGNAIKFTEKGR--VTVKVWCEGHRLFF 557 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG G+ ELE+ PF Q GEGTGLGLP++ ++ GK + S Sbjct: 558 AVEDTGQGIEKEELEQLFSPFVQAKAGVN-SGEGTGLGLPISSKFINLMGGKIMVNSVVT 616 Query: 800 KGT 802 +GT Sbjct: 617 EGT 619 >gi|332139904|ref|YP_004425642.1| sensor protein BarA [Alteromonas macleodii str. 'Deep ecotype'] gi|327549926|gb|AEA96644.1| sensor protein BarA [Alteromonas macleodii str. 'Deep ecotype'] Length = 1042 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 136/245 (55%), Gaps = 15/245 (6%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +++ +L A+K A K S+ KS FLA +SHEIRTPL AI+GFS+ + N P Sbjct: 411 EEQNARLDIARKDAIKASNVKSQFLANMSHEIRTPLNAILGFSKELNNASL-PTDQQ--- 466 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E ++ + + +L IVND+LD SKIE+GK+ ++ +P S ++ + E ++++ ++ K + Sbjct: 467 EQVRIVNTAADNLLTIVNDVLDFSKIEAGKLTINNQPFSPNKLLEEMVTIMAKSSHSKHL 526 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG-------GQIIISTTHTSNEEV 737 +++ D+ +KQ+ N+LSNA+ FT SG G+ + H EV Sbjct: 527 EFVFDLHPLPEKLIGDVFRIKQVLNNLLSNALKFTSSGTITFSVRGRALPHGIH----EV 582 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + + DTG+G++ + +K F Q+ ++ +GTGLGL +++ +V G + S Sbjct: 583 NMTIEDTGIGISRQDRKKLFNAFSQVDDALNRNYQGTGLGLVISRELVRLMNGDLTLKSA 642 Query: 798 PAKGT 802 +G+ Sbjct: 643 LGQGS 647 >gi|257059372|ref|YP_003137260.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] gi|256589538|gb|ACV00425.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] Length = 1002 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 82/254 (32%), Positives = 139/254 (54%), Gaps = 20/254 (7%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 +EK + ++A +A KS FLA++SHE+RTPL AI+GF++++ R L + + E Sbjct: 517 EEKTRQANAANLA------KSQFLAKMSHELRTPLNAILGFTQMMN--RDSSLSSQQQ-E 567 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y I+RSG +L ++ND+L++S+IE+G++ L+ +L E + L+ L A K + Sbjct: 568 YLGIINRSGEHLLSLINDVLEMSRIEAGQLTLNQTCFNLHELIKSVKELLTLKALSKGLE 627 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHTSNEEVIL 739 + +P+ I D ++QI +N++ NAI FT G ++ +T + L Sbjct: 628 LTVHQDEELPKYIEGDESKLRQIIVNLVGNAIKFTHVGHIDLYLSVLSHQPYTKEMMLQL 687 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V+DTG+G+ ELE + F Q N+ Q + EGTGLGL +++ G + S Sbjct: 688 EVKDTGIGINQDELETIFEAFKQTENNFQSK-EGTGLGLSISRQFARLMGGDITVQSQLG 746 Query: 800 KGT----LIEIIFP 809 +G+ I++I P Sbjct: 747 QGSTFTCTIKMIMP 760 >gi|126662135|ref|ZP_01733134.1| multi-sensor hybrid histidine kinase [Flavobacteria bacterium BAL38] gi|126625514|gb|EAZ96203.1| multi-sensor hybrid histidine kinase [Flavobacteria bacterium BAL38] Length = 1562 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 130/255 (50%), Gaps = 8/255 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI++ K + +L K+ A S K FL+ +SHEIRTPL AIIGF + Sbjct: 1049 DITDQKLLEIELEKEKQRAINASKAKEVFLSTMSHEIRTPLNAIIGFLRELSKH---TTS 1105 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + I N S +L L I+ND+LDISKIESG+M L L +V + ++++++ A Sbjct: 1106 QEQKIYLENSTIASSHL-LSIINDVLDISKIESGEMELESNNFDLKHSVEKVVTILEVKA 1164 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNE 735 EK + ++++F + I +L D ++QI N++ N++ FT G Q + + Sbjct: 1165 KEKGLELKSNFNSGISNLLLGDSFRIEQILYNLIGNSLKFTIEGSIYVQCDLIQDFEEEQ 1224 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 E+++ + DTG+G+ LE F Q + GTGLG+ + K +VD G I Sbjct: 1225 ELLISISDTGIGIEESYLETIFTKFSQEEKDTSRKFGGTGLGMAITKELVDLMRGNITIE 1284 Query: 796 STPAKGTLIEIIFPL 810 S GT I + L Sbjct: 1285 SKKNTGTKITVFLKL 1299 >gi|268317981|ref|YP_003291700.1| multi-sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] gi|262335515|gb|ACY49312.1| multi-sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] Length = 662 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 98/367 (26%), Positives = 171/367 (46%), Gaps = 22/367 (5%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE--QNTPSVMN 510 QL ++LE D I +++ E + NR +LF DIL +P L + P+ + Sbjct: 311 QLTAVLEQAGDAILLLDAEQRVTLFNRMAERLFACRAADILGQPVARLLPGLREVPATTD 370 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 + LE + T LS + + S L + D++E Q + + Sbjct: 371 EPVQ----------LEAVRCDGTHFMAELSRTTLTSEASAESL--LIVRDLTERLQHEAE 418 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGNPRYIEYANY 629 L A++ AE + KS L +SHE+RTPLT +IGF++VI+ + G L + E+A Sbjct: 419 LIRAREEAEAMNRLKSTLLTNLSHELRTPLTTVIGFADVIREEAAPGTL----FHEFAQL 474 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I G +L ++ +++D++++E+ + E + L E + ++ + A +K + R Sbjct: 475 IADGGRRLLHLMEEVMDLAQLEAQTLKAGRERLLLPERLRPLMATYRARAEQKGLKFRVQ 534 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 A + + AD +++ ++L NAI FT GG + ++V + V DTG+G+ Sbjct: 535 QAPGVA-VWADPELLERAVEHLLDNAIKFTERGG--VTVRFRQVEDQVGIVVEDTGIGIP 591 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L F Q + EG GLGL +A+ V+ G+ + STP +G+ I P Sbjct: 592 EAALPHVFDEFWQASSGIGRTHEGLGLGLAVARRFVEIMGGRIEVESTPGRGSRFTIWLP 651 Query: 810 LYDTSHP 816 + P Sbjct: 652 AAPVTAP 658 >gi|261250696|ref|ZP_05943270.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891] gi|260937569|gb|EEX93557.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891] Length = 709 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 76/251 (30%), Positives = 134/251 (53%), Gaps = 8/251 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + K+ +L AK+ AE+ + K+ FLA +SHE+RTPL A+IG S+ + + + + Sbjct: 217 DLKERSIRLEEAKQQAEESARAKARFLANMSHEMRTPLNAVIGLSQ----KEYYQASDKQ 272 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL-VQLYANE 681 ++ + I+ SG +L ++N +LD+SKIE GK+ L E L + ++ ++ V++ E Sbjct: 273 TKDFISMINSSGQHLLKLINSVLDLSKIEQGKVVLEKEQFYLSDLINSCKNIFVEMSKPE 332 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS-TTHTSNE-EVIL 739 + R+ + ++ AD + Q+ N+ NA+ FT G I S TH ++ +++ Sbjct: 333 VDVFFRSDLEKDF-KLFADRTKLLQVVNNLSYNAVKFTSHGHVDICSDVTHVGDQCYLVM 391 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 + DTG+GM ++ K F Q S + GTGLGL + +++VD G + S Sbjct: 392 TITDTGIGMNQEQIVKVFNEFTQADESITRQYGGTGLGLSICQSLVDLMNGTISVESELE 451 Query: 800 KGTLIEIIFPL 810 KGT + P+ Sbjct: 452 KGTCFTVSMPV 462 >gi|302923768|ref|XP_003053746.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256734687|gb|EEU48033.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 1371 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 119/241 (49%), Gaps = 10/241 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTP+T ++G +E++ + EY I S +L ++ND+ Sbjct: 798 KSQFLANMSHEIRTPITGVLGMAELLAGMHL----DEEQQEYVENIQSSATSLLTVINDI 853 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---ILADL 701 LD SK+ESG++++ SL V E ++Q K + ++ ++I ++ D Sbjct: 854 LDFSKVESGRLDIEEVQFSLSHIVKEVGRMLQFAVERKNLDFQSEIGDSIENDLVVIGDP 913 Query: 702 RSVKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 V+QI N+L+N+I FT G ++ + EV V D+G+G+ + +K + Sbjct: 914 GRVRQILTNLLTNSIKFTNQGYVRFSVVAEKETAESIEVRFTVEDSGIGIQDEVRKKLFQ 973 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 PF Q S R GTGLGL + K ++D G+ + S GT P S P + Sbjct: 974 PFSQGDASTARRFGGTGLGLTICKNLLDLMHGRISLESNVGVGTRATFWIPFNKPSGPAE 1033 Query: 819 C 819 Sbjct: 1034 A 1034 >gi|253569669|ref|ZP_04847078.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251840050|gb|EES68132.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 635 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 88/266 (33%), Positives = 132/266 (49%), Gaps = 20/266 (7%) Query: 549 PFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 PF L + HDI + + +L AK+ AE KS FLA +SHEIRTPL AI+GFS Sbjct: 245 PFEGNTVLALIHDIGDRIRRSEELIEAKRRAEDADRMKSVFLANMSHEIRTPLNAIVGFS 304 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 E++ EY I ++ NL+L ++ND+LD+S+IESGK +HF+ V + Sbjct: 305 EIMVLTE----NEEEKHEYLEIIQKNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGL 360 Query: 668 VSEAISLVQLY----ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 V E + QL + K + + F + D V Q+ N LSNAI T +G Sbjct: 361 VDEVEKVHQLKMKLNVDLKVVRPQGEFWTS-----TDRNRVMQVLFNFLSNAIKNTETGS 415 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 I + + L V DTG G+ +L + F ++ + Q GTGLGL + K+ Sbjct: 416 --ITLGLKQEGDWLKLFVSDTGCGIPEEKLPQIFTRFEKLNDFVQ----GTGLGLSICKS 469 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809 +V+ G+ + S +G+ + P Sbjct: 470 IVERLGGRIEVSSELGQGSTFALYLP 495 >gi|291530761|emb|CBK96346.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [Eubacterium siraeum 70/3] Length = 688 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 84/273 (30%), Positives = 141/273 (51%), Gaps = 21/273 (7%) Query: 520 DLRQTLEKITLGSTKEEK------------LLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567 ++R+ L ++++G KE + L + + K+ Y L + D ++ ++ Sbjct: 385 NIRENLIRMSVGERKEWERKYVRRNSGNACLFHITALRNKIDGEDRYILVLSDRTKERKT 444 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 L A A+K ++ KS F++ +SH+IRTPL+AIIGF+ + N+ EY Sbjct: 445 NLALHSAVNEAKKANNAKSSFISGISHDIRTPLSAIIGFASLAANEEGNSAATK---EYI 501 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 N I SGN +L +++D+LDIS IESG++ + V L E +++ A EK+ + Sbjct: 502 NKIITSGNQLLGLISDILDISVIESGRLTFNITNVDLSRLFYEIRTVISSIAAEKQHNLM 561 Query: 688 TSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EVILRV 741 S N I+ D +Q+ +N LSNAI FT +GG I ++ T T + E +RV Sbjct: 562 ISMHNVTHEIVRCDKHRFEQLIMNFLSNAIKFTHNGGNISLTLTETDDGKKGVPEYEIRV 621 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 RD G+GM+ +K +P+ + ++ R GT Sbjct: 622 RDNGIGMSEEFTKKIFEPYERELTDKKYRRNGT 654 >gi|289191732|ref|YP_003457673.1| integral membrane sensor signal transduction histidine kinase [Methanocaldococcus sp. FS406-22] gi|288938182|gb|ADC68937.1| integral membrane sensor signal transduction histidine kinase [Methanocaldococcus sp. FS406-22] Length = 631 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 138/247 (55%), Gaps = 16/247 (6%) Query: 573 HAKKIAE-----KESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG--NPRYI 624 HAK++ E KE KS+ ++ VSHE+RTPLT+I G+ E++ + G L R + Sbjct: 391 HAKELEESYEKLKEVDRLKSEIISIVSHELRTPLTSIKGYVELVLDGLMGELNENQRRCL 450 Query: 625 EYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 E A N IDR L+ +++LD+SKIESG + + + + + ++E ++ +Q EK Sbjct: 451 EIAKNNIDRLKRLI----DNMLDLSKIESGAIKFDIKDIKVKDMINEVLNSLQPLTKEKN 506 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 I ++ +N+ D + Q+ +N++ NAI F+P G I I N I+ ++D Sbjct: 507 IEVKCDIEDNLTA-KVDKDRIIQVLINLIENAIKFSPVKGVIEIHAFRDKNYAHII-IKD 564 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 G G+ +LE+ F Q+ N +I+ +G GLGL + K++++A+ GK ++ S KG+ Sbjct: 565 YGPGIPKKDLERIFDKFYQV-NFPKIKRDGAGLGLAICKSIIEAHGGKIWVESELGKGSA 623 Query: 804 IEIIFPL 810 I+ P+ Sbjct: 624 FHILLPM 630 >gi|148974903|ref|ZP_01811883.1| sensory box histidine kinase/response regulator [Vibrionales bacterium SWAT-3] gi|145965412|gb|EDK30661.1| sensory box histidine kinase/response regulator [Vibrionales bacterium SWAT-3] Length = 706 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 86/260 (33%), Positives = 141/260 (54%), Gaps = 8/260 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DISE K+ +L+ K+ A S KS+FLA +SHEIRTP+ AIIG S + G + Sbjct: 101 DISEMKRLNEQLAEEKERANLASQAKSEFLANMSHEIRTPMNAIIGLSYL----AIGEIS 156 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 NP Y + RSG+ +L +ND+LD+SKIE+G++ + P + + I L++ A Sbjct: 157 NPTARTYIEKVHRSGHSLLSSINDILDLSKIEAGQLFIDNIPFNALATFKDVIDLMESKA 216 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EV 737 +EK++ + S + +L D + Q+ LN++ NAI FT G + SNE E+ Sbjct: 217 DEKQLNLSMSIDPELDTPLLGDPLRLFQVILNLIGNAIKFTEKGSVSLTVDIVDSNEREL 276 Query: 738 ILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++ V DTG+G+++ L K + F Q + R GTGLGL +++ +V+A + + Sbjct: 277 TMKVCVADTGIGISDDNLHKLFQAFSQADTTTTRRFGGTGLGLNISQKLVNAMGSQITVE 336 Query: 796 STPAKGTLIEIIFPLYDTSH 815 S +G+ + T++ Sbjct: 337 SEFGQGSEFSFVVTFARTTN 356 >gi|255011870|ref|ZP_05283996.1| putative two-component system sensor histidine kinase/response regulator fusion protein [Bacteroides fragilis 3_1_12] Length = 629 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 89/268 (33%), Positives = 129/268 (48%), Gaps = 24/268 (8%) Query: 549 PFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 PF L + HDI + + +L AK+ AE+ KS FLA +SHEIRTPL AI+GFS Sbjct: 235 PFEGNKVLALIHDIGDRIRRSQELLDAKRRAEEADRMKSLFLANMSHEIRTPLNAIVGFS 294 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 E+I EY I ++ NL+L ++ND+LD+S+IESGK +H + + Sbjct: 295 EIIALTE----DEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEISGL 350 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR------ILADLRSVKQIALNILSNAIHFTPS 721 E + R+ ++ N+ R I D V Q+ N LSNAI T Sbjct: 351 ADEVYKV-------HRLKMKKGVELNVIRPSDEIWISTDRNRVTQVLFNFLSNAIKNTIE 403 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 G I E V V DTG G++ +L F ++ + Q GTGLGLP+ Sbjct: 404 GS--ITFGLVKEEEWVKFYVADTGCGISKEKLPLIFTRFEKLNDFVQ----GTGLGLPIC 457 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K++V+ G+ + S KG+ + P Sbjct: 458 KSIVERLGGRIEVESELEKGSTFTLYLP 485 >gi|288940175|ref|YP_003442415.1| integral membrane sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288895547|gb|ADC61383.1| integral membrane sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 778 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 77/259 (29%), Positives = 134/259 (51%), Gaps = 14/259 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q +L A+ AE+ + KS FLA +SHEIRTP+ IIG +E+++ N Sbjct: 250 EQRDAELREARDAAERANRAKSHFLANMSHEIRTPMNGIIGMTELLQETDL----NAAQR 305 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANE 681 + I S ++ I+ND+LD+S+IE+G++ L F+P E++ + ++ A Sbjct: 306 DCTRVIQDSAAALMRIINDILDMSRIEAGRLELERLDFDP---RESIERTLEPLREIAQR 362 Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV-- 737 K + +P R+ D ++QI N++SNAI FT G + + +++ V Sbjct: 363 KGLEFAIELDPELPARLRGDPGRLRQILTNLVSNAIKFTEQGRVSVTLDCLERTDDWVRF 422 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 ++ VRDTG+G++ E + + F Q S + R GTGLGL +++ +V+ G + S Sbjct: 423 VIAVRDTGIGLSTEECSRLFERFSQADVSTRRRYGGTGLGLAISRQLVELMGGGIDVESK 482 Query: 798 PAKGTLIEIIFPLYDTSHP 816 P G++ + L + P Sbjct: 483 PGLGSVFRVELVLESSESP 501 >gi|182412731|ref|YP_001817797.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839945|gb|ACB74197.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 876 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 80/268 (29%), Positives = 133/268 (49%), Gaps = 29/268 (10%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E +Q + L AK+ AE K FLA +SHE+RTPL I+GF+ ++ Sbjct: 334 DMTEIRQTEALLREAKERAEAGDRAKGQFLATMSHEVRTPLNGIVGFASLLLETEL---- 389 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P +EY I S ++ + D+LD ++IESG++ L +P E V A+ L A Sbjct: 390 TPEQLEYVETIRTSSETLIQLTGDILDYARIESGRLKLEPQPCDPRECVENALDLAATLA 449 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-----QIIIST--TH 731 K + + + +P I+AD+ ++Q+ +N+++NA+ FTP+G +++ S+ Sbjct: 450 LPKGVELLHWIDDTVPAAIVADVGRLRQVIVNLVNNAVKFTPTGEVAVDVRVVASSPAPE 509 Query: 732 TSNEEVI-----------------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 T++ E + VRDTG+G+ K +PF Q+ +S R GT Sbjct: 510 TADAEALPSARETADAGEASCTLEFSVRDTGIGIAPAHHPKIFRPFSQVDDSTTRRYGGT 569 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GLGL + K +V G S +G+ Sbjct: 570 GLGLAICKNLVGLMNGHITFTSELGRGS 597 >gi|239828687|ref|YP_002951311.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. WCH70] gi|239808980|gb|ACS26045.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. WCH70] Length = 608 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 115/423 (27%), Positives = 188/423 (44%), Gaps = 59/423 (13%) Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 S ++ ++ LAMTF N ++ T +RK+E S Sbjct: 225 SRKVKIYGYDEIGQLAMTF-----------NNLTKKLQEAQATTEGERRKLE-------S 266 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +L +DG+ +R G I+ N A + E +L + + + Y E Sbjct: 267 VLTHMTDGVIATDRRGRIILINDAALNILNVSRETVLSSSII-----DVLGIGDQYTFET 321 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLR----IIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 L L+ R +L L + +E L LR +I K+ + + +HDI+E Sbjct: 322 L-LEERDSL---ILDFSTDEGLYILRASLSVIQKESGLINGLIVVLHDITE--------- 368 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG-NPRYIEYANYID 631 EK + +F+A VSHE+RTPLT + + E + + PR+IE + Sbjct: 369 -----QEKIDRERREFVANVSHELRTPLTTMKSYLEALAEGAWQDKAIAPRFIEV---VQ 420 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 ++ +VNDLL +SK++S L+ V+ E + I +L +E +F Sbjct: 421 TETERMIRLVNDLLQLSKLDSKDYKLNKSWVNFSEYFHKVIDRFELTKSEN-----ITFV 475 Query: 692 NNIPR----ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 IP+ I D + Q+ NI+SNAI ++P GG+I ++E +I+ V D GVG Sbjct: 476 RKIPKEAIFIEIDKDKITQVLDNIISNAIKYSPQGGKITFRVRELADE-IIVSVSDEGVG 534 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +L K + F ++ ++ + GTGLGL +AK +V A+ G + S KGT I Sbjct: 535 IPKGDLAKVFERFYRVDKARSRKLGGTGLGLAIAKEVVIAHGGTIWAESKEHKGTTIFFT 594 Query: 808 FPL 810 PL Sbjct: 595 LPL 597 >gi|15887386|ref|NP_353067.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] gi|15154889|gb|AAK85852.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] Length = 881 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 97/363 (26%), Positives = 171/363 (47%), Gaps = 18/363 (4%) Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDI-----LRKPFTVFLEQ-NTPSVMNHYLTE 515 ++G+A+ +G I +N A L+G ++ +R T + + P + Sbjct: 525 AEGVAVFGADGRIRLSNPAFRALWGVTADEAETGTHIRAIETACAQSYDGPDGWRAFSQF 584 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS-LTMHDISEWKQEKNKLSHA 574 I S D + + TL E L L + +P + LT ++++ + + L Sbjct: 585 ITSFDDERPSRQGTL-----ELLSGLVLDYAIIPLPDAQTMLTFVNMTDSVRAERALKEK 639 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K K+DF+ VS+E+R+PLT IIGF++++K G L R EY ++I S Sbjct: 640 NDALLKADELKNDFVQHVSYELRSPLTNIIGFTDLLKTPGIGQL-TERQAEYLDHISTSS 698 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +++L IVND+LD++ +++G M L++ L+E + + + E I + ++ Sbjct: 699 SVLLTIVNDILDLATVDAGIMQLNYSDNDLNELLDDVSVQIADRLQESGISLEIVAPAHL 758 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 ++AD + +KQI + +L+NAI+F P G + +S S + + V D G G+ L+ Sbjct: 759 GSLVADHQRLKQILIKLLTNAINFAPEGSSVQLS-CQRSEGDFVFSVADKGPGIPEDMLK 817 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 F N R G GLGL + ++ V + G I S P GT++ P + Sbjct: 818 SVFDRFATRGNGG--RRTGAGLGLSIVESFVSLHHGTVSIDSRPGNGTIVTCRIP--SAT 873 Query: 815 HPH 817 PH Sbjct: 874 LPH 876 >gi|301060701|ref|ZP_07201516.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] gi|300445098|gb|EFK09048.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] Length = 545 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 128/229 (55%), Gaps = 8/229 (3%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A++ + K+ FLA +SHEIRTP+ +IGF+E+++ ++ I RSG + Sbjct: 167 ADEANQAKTQFLANMSHEIRTPMNGVIGFTEMLEETNLDEAQR----DFVATIKRSGESL 222 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696 L ++ND+LD SKIE+G+ L+ S + V E L++ +K + I + + N+P R Sbjct: 223 LTLINDVLDFSKIEAGEFTLNEVDFSPELIVHEVSELIRPRIGKKPVKISSVISGNMPSR 282 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYEL 753 + D + +QI +N++ NA FT SG +I +S ++++V++ +RDTG+G+ +L Sbjct: 283 VKGDEQRFRQILINLMGNAQRFTDSGEIEIQLSIDEETSDQVLVHTSIRDTGIGIAERDL 342 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + +PF Q + + GTGLGL + K + + G + S +G+ Sbjct: 343 KTIFEPFRQSDGTSTRKYGGTGLGLSICKQLSNMMRGDVWAESKLFEGS 391 >gi|317151758|ref|YP_004119806.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316942009|gb|ADU61060.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 432 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 101/399 (25%), Positives = 183/399 (45%), Gaps = 38/399 (9%) Query: 450 EVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 E+ + ++L+ SD I ++N + G+I+ + A + E +L PF L ++ Sbjct: 41 ELERFRALLDRVSDAIFVVNADTGLIVDFSGATLSMLDCGRESLLDMPFKGLLPEHIARY 100 Query: 509 MNHYL---TEILSLD--LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 ++ TE LSL+ R L E ++LRI+ + + + DISE Sbjct: 101 ADNLFNISTETLSLETEFRHPATPDRLPVPVE---MTLRIVEHREVRQAI--VVARDISE 155 Query: 564 WK--QEKNKLSHAK---KIAEK------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 K +E K SH + ++ E+ + K++FL+ VSHE+RTPLT+IIGF+++I+ Sbjct: 156 RKRSEESMKKSHDELEVRVRERTRELARANKAKTEFLSIVSHELRTPLTSIIGFAKIIRK 215 Query: 613 QR----FGPLGNPRYIEYANYIDR----------SGNLVLDIVNDLLDISKIESGKMNLH 658 + F + R + +DR G + ++ND+LD++K+E+ K+ Sbjct: 216 KLAERVFPAVDRDRDPKLCKEMDRIGKNIDIIEAEGERLTALINDVLDLAKLEANKVEYR 275 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 EP++ E + A+ +L ++P+++ D + Q+ +N+ SNA F Sbjct: 276 MEPLAPAEFLRPAMDSSSALFQASEVLFLNEVGPDLPQVMGDRHRLIQVMVNLFSNAAKF 335 Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 T G + + + V DTG G+ + F Q S R GTGLGL Sbjct: 336 TRQGS--VTCRAELVGAHLRVSVVDTGAGIPQEQQTSIFDKFIQGQESLTDRPTGTGLGL 393 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 P+ + ++ + G ++ S P +G+ P+ + P Sbjct: 394 PICRQIIKDHQGHLWVESAPGQGSRFLFTLPVIADAKPE 432 >gi|237807392|ref|YP_002891832.1| aerobic respiration control sensor protein ArcB [Tolumonas auensis DSM 9187] gi|237499653|gb|ACQ92246.1| multi-sensor hybrid histidine kinase [Tolumonas auensis DSM 9187] Length = 782 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 100/390 (25%), Positives = 190/390 (48%), Gaps = 39/390 (10%) Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 +E E + ++++E + + L S L+++ D + N LS N+A+ + G +I Sbjct: 136 LEAEAIQREKAQKELEEQSVLLRSFLDSSPDLVFYRNEREEFLSCNKALETMLGRGRNEI 195 Query: 493 L-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG-----STKEEKLLSLRIIIK 546 + R P+ ++ Q +++ D+ +T + +T +R Sbjct: 196 IGRTPYGLYEPQMAEQIISR------DRDVFETNQPVTYELWFPYPDGRRACFEMR---- 245 Query: 547 KLPFSSCYSLTM------HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 ++PF + + DI+E K+ +++L EK S K+ F++ +SHE+RTPL Sbjct: 246 QVPFFAANGERLGLVGFGRDITEHKRYQDEL-------EKASQDKTTFISTISHELRTPL 298 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 ++G S ++ + PL + + +Y N I S + +I ND++D+ KIE ++ + Sbjct: 299 NGVVGLSHILLDT---PLNDLQR-QYLNTIHLSAVTLGNIFNDIIDLDKIERRRLKIANS 354 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719 + L +S+ +L L K + + ++P I+AD ++QI N+LSNA+ FT Sbjct: 355 KIDLRLLLSDLQTLSTLMVEAKGLYLHFDIDGDVPHWIVADGTRLRQILWNVLSNAVKFT 414 Query: 720 PSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 GG + + ++ +V LR + DTG+G+ +E E + Q+P ++ R GTG+ Sbjct: 415 AEGGITFGVQVSPSAENKVHLRFDIEDTGIGIPEHEQENIFAMYYQVPGTR--RAVGTGI 472 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 GL + K +VDA G ++ S G+ I Sbjct: 473 GLAITKQLVDAMDGMIHVDSELGHGSCFTI 502 >gi|209522699|ref|ZP_03271257.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209496748|gb|EDZ97045.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 959 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 79/264 (29%), Positives = 134/264 (50%), Gaps = 11/264 (4%) Query: 557 TMHDISEWKQ-EKNKLSHAKKIAEKESSHK------SDFLARVSHEIRTPLTAIIGFSEV 609 DI++ +Q E + + K++ EK + K +FLA SHE+RTPL +IG SE Sbjct: 556 VFEDITQRRQAEIERQNFTKQLKEKNDALKRMDELKDEFLANTSHELRTPLNGMIGLSES 615 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + GPL + + + I +SG+ + +VND+LD SK+ + L +P+ L E V Sbjct: 616 MLDGVAGPLTELQR-QNLSMIAKSGHRLSTLVNDILDFSKLRHQTLELQLQPLGLREIVE 674 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 + L + K I + ++ P + AD ++QI N++ NAI FT SG I ++ Sbjct: 675 VVVVLSKPLIGNKDIELINEIPDDFPAVNADENRLQQILYNLIGNAIKFTDSGTVKITAS 734 Query: 730 ---THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 T +N ++ + DTG+G+ + + + F Q S + GTGLGL + K +V+ Sbjct: 735 VLDTDANNSMAVINISDTGIGILPEKHHRIFESFEQGDGSTARQYGGTGLGLAITKQLVE 794 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPL 810 + GK ++ S G+ P+ Sbjct: 795 LHQGKIWLDSVVGSGSTFSFTLPI 818 >gi|119776261|ref|YP_929001.1| sensory box histidine kinase/response regulator [Shewanella amazonensis SB2B] gi|119768761|gb|ABM01332.1| multi-sensor hybrid histidine kinase [Shewanella amazonensis SB2B] Length = 1236 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 132/251 (52%), Gaps = 10/251 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ K + L AK+ AE + +KS+FLA +SHEIRTP+ AIIG ++ Sbjct: 694 THKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAGRTSLT 753 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 Y++ A++ S +L I+ND+LD SKIE+GK+ L LD+ + ++ L Sbjct: 754 E-QQKDYLDKASF---SAQSLLRIINDILDFSKIEAGKLELEKVAFPLDKVLDHSLDLNA 809 Query: 677 LYANEKRI--LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS 733 L A EK I L+ + I + D + Q+ +N+LSNA+ FT +G ++ Sbjct: 810 LRAQEKGIELLLYAPVSAGI-MLKGDPLRLGQVLINLLSNAVKFTQNGEIELGCEDVGER 868 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + L+ VRDTG+G++ + +K F Q S + GTGLGL ++K +V G Sbjct: 869 DHRITLKFWVRDTGIGISREQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGT 928 Query: 792 FYIFSTPAKGT 802 + S P G+ Sbjct: 929 MQVESEPGVGS 939 >gi|46123237|ref|XP_386172.1| hypothetical protein FG05996.1 [Gibberella zeae PH-1] Length = 2544 Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 136/249 (54%), Gaps = 17/249 (6%) Query: 566 QEKNKLSHAK---KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + KN + AK K+AE+ + KS FLA VSHE+RTPL +IG SE++++ N Sbjct: 1900 KAKNAEAEAKRNVKLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDSEL----NRD 1955 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +E A+ I S +L+L ++ND+LD SK+E+ KM L+ + ++ V E + V Y+N + Sbjct: 1956 QLEMADSIRVSADLLLTVINDILDFSKMEADKMKLYIIAFNPEDMVREVVRAVS-YSNRE 2014 Query: 683 RIL---IRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736 + ++ + N+P +L D + Q+ N++ N++ FT G I + +E Sbjct: 2015 KTSKKNVKIVQSINLPPMLIYGDPIRLHQVLGNLIGNSLKFTEDGSITIGARLDKETQEH 2074 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM-GKFY 793 + VRDTG+G+ +L K +PF Q S + G+GLGL + K++++ M GK Sbjct: 2075 ATLTFWVRDTGIGIPPQQLAKLFQPFSQADASTARKYGGSGLGLSICKSLIETMMKGKIR 2134 Query: 794 IFSTPAKGT 802 + S GT Sbjct: 2135 LESEENVGT 2143 >gi|239787730|emb|CAX84245.1| Sensor protein [uncultured bacterium] Length = 992 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 80/248 (32%), Positives = 128/248 (51%), Gaps = 9/248 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ + KL AK+ AE + K+DFLA +SHEIRTP+ ++G ++++ PL + + Sbjct: 425 ERRRWEEKLQLAKEEAEASNRAKTDFLAAMSHEIRTPMNGVLGMADLVLRT---PLTDQQ 481 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y I RSG +L I+ND+LDISKI +G + L L E V + I + K Sbjct: 482 R-HYVETIHRSGRTLLRIINDILDISKIHAGHLALELLQFDLAEVVQDVIDMFAERVKTK 540 Query: 683 RILIRTSF-ANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL 739 + F +P +L D + QI N+L NAI FT G + + +V+L Sbjct: 541 GLTFAIEFPEEGMPVHLLGDPYRLSQILFNLLGNAIKFTERGSIGLFVEVLEERAWDVLL 600 Query: 740 R--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 R V DTG+G++ ++ + F Q S + GTGLGL + + +V G+ + ST Sbjct: 601 RFKVTDTGIGISPDYCQRLFQAFTQEDLSITRKFGGTGLGLAITQKLVGMMAGELTVEST 660 Query: 798 PAKGTLIE 805 +G++ + Sbjct: 661 QGQGSIFQ 668 >gi|153838733|ref|ZP_01991400.1| tmao reductase sytem sensor tors [Vibrio parahaemolyticus AQ3810] gi|149747858|gb|EDM58738.1| tmao reductase sytem sensor tors [Vibrio parahaemolyticus AQ3810] Length = 723 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 77/244 (31%), Positives = 126/244 (51%), Gaps = 7/244 (2%) Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 + A+ AE+ S KS FLA +SHEIRTP+ ++G + ++ + P+ YA I+ Sbjct: 457 AQARNEAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPIQK----RYAEIIN 512 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 RSG +L I+ND+LD SKIE+G + + L + V + L+ A EK++L Sbjct: 513 RSGKTLLAILNDVLDYSKIEAGHLEIRRLGFDLHQMVEDTFQLMNSRAQEKQLLFSYHIE 572 Query: 692 NNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMT 749 +++ R D+ + Q+ N++ NAI FT G I +S +V+ V DTG+G++ Sbjct: 573 SDVSRYWKGDVTRISQVLNNLVGNAIKFTEDGEIDIYVSLNPEDESQVLFEVSDTGIGIS 632 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + F Q G GTGLGL ++K +V+A G + S +G+ P Sbjct: 633 KKDQKTLFDAFTQAEGGLNQIG-GTGLGLAISKRIVEAMGGVLEVDSEEGEGSRFWFSIP 691 Query: 810 LYDT 813 L ++ Sbjct: 692 LEES 695 >gi|150017913|ref|YP_001310167.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149904378|gb|ABR35211.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 669 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 109/398 (27%), Positives = 186/398 (46%), Gaps = 46/398 (11%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 N+ K E E+ L S++E T D I +GII S N ++GY E+++ K ++ + Sbjct: 127 NRMKSEAEIRGLASLVENTEDAIIGKTLDGIITSWNIGAENIYGYKKEEVIGKHISIIIP 186 Query: 503 QNTPSVMNHYLTEILS------------------LDLRQTLEKI------TLGSTK---- 534 + + +I + +D+ T+ I +G++ Sbjct: 187 DEKINDFYEIIKKIKNGERVRGFESKRRKKNGQLIDVSITVSPIYDFEGNLIGASNITRD 246 Query: 535 --EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 E K + + K S+ Y + E + +L AK+ A+K + KS+FLA + Sbjct: 247 ITENKKVEKELRDKYEEISALYEELIAIEEELRSNYQELEKAKEEADKANKAKSEFLANI 306 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHEIRTP+ IIG +++K N EY + + S L+L I+N +LDISKIES Sbjct: 307 SHEIRTPMNGIIGIIDLLKVTEL----NNNQKEYLDMLSNSSRLLLGILNTILDISKIES 362 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI----LADLRSVKQIA 708 GK L +P ++ + + + + ++K + + F P I + D + Q+ Sbjct: 363 GKFELILKPFNMKKTLDRITKELSIACSKKNLEV---FYYIDPYINFDLIGDEIRLNQVL 419 Query: 709 LNILSNAIHFTPSGGQII--ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIP 764 +NI++NAI FT GQI+ + +T+N ++ L V+DTG+G+ K F Q Sbjct: 420 INIINNAIKFTEM-GQIMFKVRKLNTTNNKLTLEFSVKDTGIGIKEEFKNDIFKKFIQQD 478 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + + +GTGLGL ++K + G + S KG+ Sbjct: 479 MTYTKKYDGTGLGLAISKDIAKLMNGDIWFESIENKGS 516 >gi|309792218|ref|ZP_07686690.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308225759|gb|EFO79515.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 726 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 71/260 (27%), Positives = 136/260 (52%), Gaps = 16/260 (6%) Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 +S +L +HDIS+ K ++ + + +F++ VSHE+R PL + GF +V+ Sbjct: 471 ASYVALVIHDISDQKLQERR--------------QFEFISMVSHELRNPLNTLNGFLKVV 516 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + GPL N E+ D + + + +LL+ +++ESG++ L + L + + Sbjct: 517 LQGKAGPL-NELQQEFLGLADGQADALKGRITELLEYNRLESGRLRLQPQWSDLADLLLR 575 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + Q+ A + + I T+ NIP +L D + Q+ N++ NA+ TP+GG+I + Sbjct: 576 TSTRFQIQAEQFGLTIETAIPTNIPEVLMDPERIGQVLTNLIENAMKATPAGGKIALRAL 635 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + V+++V DTGVG+ + EK F ++ ++ + G GLGL + + +V+ + G Sbjct: 636 -VQEQYVLVQVADTGVGIPEEQREKIFSRFYRLEHTSSLHGVHLGLGLSICQQIVEGHNG 694 Query: 791 KFYIFSTPAKGTLIEIIFPL 810 + ++ S A+G+ PL Sbjct: 695 RIWVESAVAQGSCFNFTLPL 714 >gi|269961140|ref|ZP_06175508.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834091|gb|EEZ88182.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 987 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 83/268 (30%), Positives = 133/268 (49%), Gaps = 15/268 (5%) Query: 562 SEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 S+ KQ +L + A+K AE+ S KS FLA +SHEIRTP+ ++G + ++ + Sbjct: 440 SQLKQANRRLNEEVLNHAKARKQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLIDSG 499 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 NP YA I+RSG +L I+ND+LD SKIE+G + + L + V + L Sbjct: 500 L----NPIQKRYAEIINRSGKTLLAILNDVLDYSKIEAGHLEIRSLGFDLHQMVEDTFQL 555 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHT 732 + A EK++L +++ R D+ + Q+ N++ NAI FT G I +S Sbjct: 556 MNGKAQEKKLLFSYHIESDVGRYWKGDVIRINQVLNNLVGNAIKFTEQGEIDIYVSLNPE 615 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 +V+ V DTG+G+ + + F Q G GTGLGL +++ ++ A G Sbjct: 616 DETQVLFEVSDTGIGIAKKDQKTLFDAFTQAEGGMNQTG-GTGLGLAISRRIIQAMGGCL 674 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 + S G+ PL + S P + + Sbjct: 675 EVDSDEGHGSRFWFSIPL-EESEPVETV 701 >gi|255036993|ref|YP_003087614.1| Hpt sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254949749|gb|ACT94449.1| Hpt sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 854 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 83/247 (33%), Positives = 137/247 (55%), Gaps = 11/247 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI++ + +L AK+ AE S K FLA +SHEIRTPL +IIG++E +KN+ Sbjct: 331 DIAKSNDYRQQLEEAKEEAEYHSMAKQRFLANMSHEIRTPLQSIIGYAEALKNEE----- 385 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 PR + S +L L +VN++LD S+I S + S++ ++E + +++ A Sbjct: 386 KPRKQDLETLHSASEHL-LYLVNEVLDYSRIISDRFTFEERVFSINPLLNEVVQVLRPTA 444 Query: 680 NEKRILIR--TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEE 736 K +++R S N+ + D ++Q+ N+L+NAI FT +G ++ T H T N Sbjct: 445 LSKGLILRLENSLKPNL-YLHGDPFRLRQVLYNLLTNAIKFTENGEVVLKVTGHETGNAA 503 Query: 737 VI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 I ++ DTG+G++ ++E+ F Q S Q + GTGLGL + KA+V+ G ++ Sbjct: 504 KIEYQISDTGIGLSADQVERIFNQFEQADPSIQRKYGGTGLGLSIVKALVEGMSGNIHVT 563 Query: 796 STPAKGT 802 S P +GT Sbjct: 564 SKPGEGT 570 >gi|209515313|ref|ZP_03264180.1| Hpt sensor hybrid histidine kinase [Burkholderia sp. H160] gi|209504294|gb|EEA04283.1| Hpt sensor hybrid histidine kinase [Burkholderia sp. H160] Length = 721 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 81/255 (31%), Positives = 127/255 (49%), Gaps = 8/255 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ K + KL A+ A+ + KS FLA +SHEIRTPL AI+G E++ PL Sbjct: 211 DITTLKNTERKLDEARAAADAANQAKSAFLAMMSHEIRTPLNAILGNLELLGRSPLSPLQ 270 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + S +L I+ND+LD SK+ESG+M L L + + ++ + A Sbjct: 271 EERL----GVVTSSSTALLGIINDILDFSKVESGQMTLESISFDLGHVIRQVGAMFEPVA 326 Query: 680 NEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNE 735 + K + + + P L D ++QIA+N++SNAI FT +G ++ + + Sbjct: 327 HAKGLEFDCVIDDALAPHYLGDPTRIRQIAVNLVSNAIKFTATGDVLLEVYLKDDTAEDS 386 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +++ V DTG+GMT + E F Q +S R GTGLGL L + + G + Sbjct: 387 PIVIGVSDTGIGMTLQQQETLFHAFTQADSSIARRYGGTGLGLALCLRLTELMHGTIQVK 446 Query: 796 STPAKGTLIEIIFPL 810 S G+ + P+ Sbjct: 447 SELNAGSTFIVTLPI 461 >gi|117926486|ref|YP_867103.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610242|gb|ABK45697.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 910 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 100/362 (27%), Positives = 187/362 (51%), Gaps = 12/362 (3%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN--H 511 L ILE + DG +++R+G + +N+ ++++ P I+++ ++ L+ P + + Sbjct: 406 LHDILETSVDGFLVVDRKGNVTHSNQRFAQMWQIPESIIMQQDESLLLQHVLPQLSHPHS 465 Query: 512 YLTEILSL--DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569 ++ ++ L D + +L+++ + + S + + DI+ ++++ Sbjct: 466 FMAKVNGLYEDDQFSLDELMFRDGRVFERHSRPLYHNGDMVGRLWQF--RDITREREQQR 523 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK AE ++ KS FLA +SHEIRTPL IIG E ++ + R+ + Sbjct: 524 QLQTAKDRAESANAAKSAFLATMSHEIRTPLNGIIGMLEHLRQEPLEAALKERF----DL 579 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RS ++LD++N++LD SKIE+ ++ P + + + I L +L A+EK I + Sbjct: 580 ICRSSEVLLDLLNNILDFSKIEADQLRFESIPYRPKQLIQDGIELHKLLAHEKGIDLSCH 639 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEEVILRVRDTGVG 747 N+P + D ++QI +N++SNAI FT +G QI + ++ + V D+G G Sbjct: 640 CHPNLPSSSMGDPTRIRQILINLVSNAIKFTETGYVQIEAYLEEGAPAQLHINVSDSGSG 699 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +L + PF Q S R GTGLGL ++K +V+A G+ + S +G+ + Sbjct: 700 IPEAQLAQLFTPFTQADGSISRRHGGTGLGLAISKRLVEAMYGQISVTSQVGEGSSFLMT 759 Query: 808 FP 809 P Sbjct: 760 IP 761 >gi|59713543|ref|YP_206318.1| sensor histidine kinase [Vibrio fischeri ES114] gi|59481791|gb|AAW87430.1| sensor histidine kinase, GacS/BarA family [Vibrio fischeri ES114] Length = 864 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 138/247 (55%), Gaps = 10/247 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I + QE L K AE + KS FLA +SHEIRTPL IIG S+++ P+ + Sbjct: 329 IYSFNQETEYLEIEKSKAEALAKAKSSFLANMSHEIRTPLNGIIGMSDILTETDLTPVQS 388 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 EY ID S +L ++ND+LD+SKIESG + + + +++E + ++++ A Sbjct: 389 ----EYVETIDTSSQTLLLLINDILDLSKIESGNLVIVPQESNVEEVAYDTLTVILSKAT 444 Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 EK + ++ AN++P ++ D ++Q+ +N++SNA+ FT G +I+S + E Sbjct: 445 EKGLALQVDIANDLPELVMLDEHRLRQVLMNLMSNAVKFTQDGA-VILSINYQQKENGRG 503 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V+DTG+G++ + E+ +PF Q +S + GTGLGL + + +V+ G+ + Sbjct: 504 LLFFSVKDTGIGISKDKCEQIFEPFTQEDSSITRQFGGTGLGLAICRQLVEMLGGELKVD 563 Query: 796 STPAKGT 802 S G+ Sbjct: 564 SEKGFGS 570 >gi|257870079|ref|ZP_05649732.1| histidine kinase [Enterococcus gallinarum EG2] gi|257804243|gb|EEV33065.1| histidine kinase [Enterococcus gallinarum EG2] Length = 613 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 100/398 (25%), Positives = 188/398 (47%), Gaps = 36/398 (9%) Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 ++ Q E Q G E+ + ME E +L S+L +DG+ +R G +++ N Sbjct: 235 DELGQLAETFNQLGERIEET-----QEAMESERNRLDSVLSHMTDGVVATDRRGKVITIN 289 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 L E+ + + L+ + + L + + + I +G+ Sbjct: 290 EMAMSLLNVTSEEAVGQSILTLLQIDEEYTLRKLLESPDEMLIERPNNDI-VGTN----- 343 Query: 539 LSLRI----IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 L LRI I ++ F S MHD++E QEKN+ + +F++ VSH Sbjct: 344 LILRIDFSMIRRESGFISGLVAVMHDVTE--QEKNE------------QERREFVSNVSH 389 Query: 595 EIRTPLTAIIGFSEVIKNQRF-GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 E+RTPLT++ + E + + P P +++ +D + ++ ++NDLL +S+++SG Sbjct: 390 ELRTPLTSMRSYIEALSEGAWQDPEIAPNFLKVT--LDETDRMI-RMINDLLSLSRMDSG 446 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYA-NE-KRILIRTSFANNIPRILADLRSVKQIALNI 711 L E ++ +E VS + + NE K+ +IR F + D + Q+ NI Sbjct: 447 NAQLQLEYINFNELVSFVLDRFDMMVTNENKKYVIRREFTKRELWVEVDTDKMIQVIDNI 506 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 ++NAI ++P GG I + T N ++L + D G+G+ +L K F ++ ++ + Sbjct: 507 MNNAIKYSPDGGVITVKLMETHNN-IVLSINDQGLGIPKKDLTKIFDRFYRVDKARARQQ 565 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL +++ ++ ++ G + S +G+ I+ P Sbjct: 566 GGTGLGLAISREVIKSHGGAIWAESRENRGSTFYIMLP 603 >gi|237746390|ref|ZP_04576870.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] gi|229377741|gb|EEO27832.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] Length = 1290 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 13/243 (5%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN-PRYIEYANYIDRS 633 K A+ S K+DFL+R+SHEIRTP+ AI G + + K+ LG+ R ++ + I++S Sbjct: 903 KARADAVSKAKTDFLSRMSHEIRTPMNAISGMTTIAKS----VLGDRERVMDCLDKIEQS 958 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 +L ++ND+L++S+IESGK+ L+ EPV L++ ++ +++ A K + + SF Sbjct: 959 NRYLLGLINDILEMSRIESGKVELNLEPVLLEQVEAQLDGMMRAPAELKGLSL--SFGLR 1016 Query: 694 IPR---ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTGVG 747 P + D+ Q+ +NI+ NA+ FT SG + + ++ V+DTG+G Sbjct: 1017 FPLHCPVYLDVLRFTQVFVNIIGNAVKFTESGSIFAHARLIEKKDGMVFVRFSVKDTGIG 1076 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + + F Q S +R GTGLGL ++ ++V G + S P KG+ Sbjct: 1077 IAPEAIRRIFNSFEQGNESTSMRYGGTGLGLTISSSLVKMMGGSLEVESEPGKGSEFYFT 1136 Query: 808 FPL 810 PL Sbjct: 1137 LPL 1139 >gi|209694498|ref|YP_002262426.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Aliivibrio salmonicida LFI1238] gi|208008449|emb|CAQ78615.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Aliivibrio salmonicida LFI1238] Length = 745 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 84/254 (33%), Positives = 132/254 (51%), Gaps = 10/254 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 ++ E K+E +K A+ AEK + KSDFLAR+SHEIRTPL I+G S ++K + PL Sbjct: 351 ELIEAKEESHK---AQAAAEKLTLVKSDFLARMSHEIRTPLNGILGISGLLKQAQL-PLE 406 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + I+ I + G +L ++ND+LD S+IE K+N++FE LD+ + ++ Sbjct: 407 QKKQIQ---IIHQGGEHLLAVLNDILDFSQIEQDKLNINFEEFVLDDVLDTINAIYTPLC 463 Query: 680 NEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 EK I + +N + D + QI N+LSN + FT G + + N ++ Sbjct: 464 MEKNITFNLNNNIDNNVILYTDKVRLTQILFNLLSNGVKFTEIGQVTLSLNLESKNGQIF 523 Query: 739 L--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 L V DTGVG+ PF Q+ ++ + G+GLGL + K ++ G + S Sbjct: 524 LCFDVEDTGVGIDIENQASVFDPFIQVESTGTRKFGGSGLGLAIVKQLLHLLNGSITVVS 583 Query: 797 TPAKGTLIEIIFPL 810 +P GT I P+ Sbjct: 584 SPGLGTSFTIRLPV 597 >gi|159487331|ref|XP_001701676.1| predicted protein [Chlamydomonas reinhardtii] gi|158280895|gb|EDP06651.1| predicted protein [Chlamydomonas reinhardtii] Length = 245 Score = 117 bits (294), Expect = 6e-24, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 120/243 (49%), Gaps = 35/243 (14%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLAR+SHEIRTPL +I +++ P + N I SG +L ++ D+ Sbjct: 6 KSQFLARMSHEIRTPLNGMIAVGQLLAETSL----TPAQWDLVNTIRCSGETLLTLITDI 61 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRS 703 LD S+IE+ KM LH LD + A+ + L A ++R+ + A N+PR+L D + Sbjct: 62 LDFSRIEANKMVLHNAVFKLDTVIEAAMEIAGLKAAQRRLQVAYHVAENMPRMLYGDAQR 121 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--------------------------- 736 ++QI LNIL+N I FT G ++ + T Sbjct: 122 LQQILLNILNNGIKFTEEGELLLEAGTGADTAAATAAAPTAPVAAAVVPPAPNGPEADWP 181 Query: 737 -VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +++R VRDTG+G+ +L + F Q+ S R G+GLGL +++ + +A G+ + Sbjct: 182 LMVIRFSVRDTGIGIAPADLGRLFNSFTQVDASHTRRYGGSGLGLAISRKLCEAMGGQMW 241 Query: 794 IFS 796 + S Sbjct: 242 VES 244 >gi|283850560|ref|ZP_06367848.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283574131|gb|EFC22103.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 740 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 128/255 (50%), Gaps = 15/255 (5%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L ++D E K +L K IAEK + KS+FLA +SHEIRTP+ I+G +E+ Sbjct: 331 LRLYD--ELKTRAEELGEQKAIAEKANRAKSEFLANMSHEIRTPMNGIMGMTELALLSEI 388 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P Y++ A S +L I+ND+LD+SKIE+GK+ L + L A+ + Sbjct: 389 -PDQTRSYLQMAKS---SALHLLSIINDILDLSKIEAGKLVLDCQEFDLLHALHAVCDPL 444 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII------- 727 + A + + + +P +L D KQI NI+ NA+ FT GQ+ + Sbjct: 445 AMTARKNGVALTCVIDPAVPAALLGDKGRFKQILTNIVGNAVKFTRK-GQVEVGVRPADS 503 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + ++ VRD+G+G+ LE + F Q +S I GTGLGLP++K V+ Sbjct: 504 AGGDAGRSRLLFWVRDSGIGIPAGRLEAIFESFAQATSSAHIEFGGTGLGLPISKKFVEM 563 Query: 788 NMGKFYIFSTPAKGT 802 G ++ S +G+ Sbjct: 564 MGGSIWVESEEGRGS 578 >gi|229542344|ref|ZP_04431404.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus coagulans 36D1] gi|229326764|gb|EEN92439.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus coagulans 36D1] Length = 606 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 98/371 (26%), Positives = 170/371 (45%), Gaps = 41/371 (11%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E E +L SIL +DG+ +R G I+ N +++ E +L +P L+ Sbjct: 258 EGERRKLDSILTHMTDGVIATDRRGRIILINEPAAEMLDVSRETVLSQPLISVLKIENEH 317 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR----IIIKKLPFSSCYSLTMHDISE 563 + LTE + + L + EE+ LR +I + F S +HD++E Sbjct: 318 KFDDLLTE---------QDSVILDFSTEEEPYILRANFSVIQNEAGFVSGLITVLHDVTE 368 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQRFGPL 618 EK + +F+A VSHE+RTPLT + + E + K+++ P Sbjct: 369 --------------QEKIDMERREFVANVSHELRTPLTTMRSYLEALTDGAWKDEKIAP- 413 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 ++ ++ +VNDLL +SK++S +L+ E V+ E I ++ Sbjct: 414 ------QFLGVTQNETERMIRLVNDLLKLSKMDSKDEHLNKEWVNFVEFFHHVIDRFEM- 466 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A ++ + + N + D + Q+ NI+SNA+ ++P GGQI NE++ Sbjct: 467 AKQQNVTFKRKLPNTEIFVEIDEDKMTQVLYNIISNALKYSPEGGQITFKLREL-NEKIE 525 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + + D GVG+ ++K + F ++ ++ + GTGLGL +AK MV+ + G + S Sbjct: 526 VSISDQGVGIPKENVKKIFERFYRVDKARSRKLGGTGLGLAIAKEMVEMHGGSIWASSKE 585 Query: 799 AKGTLIEIIFP 809 KGT I P Sbjct: 586 GKGTTIYFTLP 596 >gi|307296809|ref|ZP_07576627.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] gi|306877722|gb|EFN08948.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] Length = 766 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 127/237 (53%), Gaps = 6/237 (2%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A++ AE S+ K+ FLA +SHEIRTP+ I+GF++++ G P I S Sbjct: 284 ARRSAEMASAAKTGFLANMSHEIRTPMNGILGFADLL----LGAGLPPDQHRQVKMIADS 339 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G ++ ++ND+LD+SK+E+G+M + EP L A+ ++LV++ A +K I + A++ Sbjct: 340 GRAMMRLLNDILDLSKVEAGQMEIAREPFDLVHALDACLNLVRVGAEQKGIDLIRDIADD 399 Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 +PR + D ++Q+ LN+L NA+ FT S G + + + +++ V D+G G+ Sbjct: 400 LPRTVTGDGLRLRQVVLNLLGNAVKFT-SEGHVALRVHLDGADRLVIVVEDSGPGIAPER 458 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q R G+GLGL ++ +V G+ + S +G+ + P Sbjct: 459 QAAIFEKFVQADAGTAARFGGSGLGLSISAQLVTLMNGELTLDSVVGEGSRFILRLP 515 >gi|294625969|ref|ZP_06704580.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599707|gb|EFF43833.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 767 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 127/241 (52%), Gaps = 8/241 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S K+ FLA + HE+RTP+T ++G SE++ + + Y I R Sbjct: 390 HKQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTSL----DIKQRSYTESIRR 445 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--RILIRTSF 690 +G +L +VND LD+++IESG++ L EP S+ + V+E +L+ A E+ R + Sbjct: 446 AGAHLLRLVNDALDLARIESGRLELDVEPFSVRQLVAEVEALMAPLAQERGLRFSLEIGL 505 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 +I D ++QI LN+L+NAI FT G + TT S + + V DTG G+ Sbjct: 506 LGDIT-ASGDCTRIRQILLNLLNNAIKFTERGVVGLKLTTLGSYQGLRFEVADTGPGINV 564 Query: 751 YELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + + F Q ++ R G+GLGL + + + A G+ + S GT + P Sbjct: 565 EQKARLFQRFEQGDGARTTSRYGGSGLGLAICQELAIAMGGQIEVISRLGAGTRFVVELP 624 Query: 810 L 810 L Sbjct: 625 L 625 >gi|110834847|ref|YP_693706.1| two-component sensor histidine kinase protein [Alcanivorax borkumensis SK2] gi|110647958|emb|CAL17434.1| two-component sensor histidine kinase protein, putative [Alcanivorax borkumensis SK2] Length = 1144 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 81/262 (30%), Positives = 138/262 (52%), Gaps = 6/262 (2%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + M +I ++ L AK++AE + KS +L +SHE+R+PL A G++++++ Sbjct: 668 MLMEEIKAHEKTDLALQQAKELAESANQAKSRYLTGLSHELRSPLNAAFGYAQLLEQDPT 727 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P N R + I RS + D++ LL+ISKIE+G++ L+ V + E + E +++ Sbjct: 728 IP-ENRR--DAIGAIRRSTEHLSDLIEGLLEISKIEAGRLELYRNQVCVPELIDELVTMF 784 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 QL A EK I + +P + D + ++QI +N+LSNAI FT GQ+ + T N Sbjct: 785 QLQAAEKGIGFEFRSKSQMPTWVTTDEKRLRQILINLLSNAIKFTRE-GQVTL-TFRYRN 842 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + + DTGVG+ +L++ +PF ++ GTGLGL + + + D G + Sbjct: 843 QVAEFVIADTGVGIDEEDLKRIFRPFERVRKPGTPSVHGTGLGLTITQLLADIMGGDIQV 902 Query: 795 FSTPAKGTLIEIIFPLYDTSHP 816 S P +G+ + L S P Sbjct: 903 SSIPGQGSEFRLSVMLSRLSGP 924 >gi|77359030|ref|YP_338605.1| sensor protein [Pseudoalteromonas haloplanktis TAC125] gi|76873941|emb|CAI85162.1| hypothetical tryptophan-rich sensor protein [Pseudoalteromonas haloplanktis TAC125] Length = 905 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 127/229 (55%), Gaps = 15/229 (6%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L+ AKK ++ + KS FLA +SHEIRTPL A+IGFS + + + I+Y + I Sbjct: 523 LAQAKKQSDLANRAKSQFLANMSHEIRTPLNAVIGFSSLARKED----DANTLIDYLDKI 578 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + S +L+++ND+LDISKIES ++ L P L + ++ + A K I+ + + Sbjct: 579 NSSSKSLLNLINDILDISKIESKRLVLERIPFDLTALIQRINTMFEQSAASKAIVWKIN- 637 Query: 691 ANNIPR---ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDT 744 +NIP+ + D ++QI LN+ SNAI FT +G + T + ++ + V DT Sbjct: 638 -SNIPKDTWFVGDPMRLEQIMLNLCSNAIKFTNAGSVTLNVDTQLIAPNKAQLTIAVIDT 696 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK---AMVDANMG 790 G+G+ + EK F Q NS + GTGLGL +AK +++AN+ Sbjct: 697 GIGIKATQHEKLFSAFTQADNSTSRQFGGTGLGLAIAKELSVLMNANIA 745 >gi|322508065|gb|ADX03519.1| Sensor protein [Acinetobacter baumannii 1656-2] Length = 912 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 77/266 (28%), Positives = 136/266 (51%), Gaps = 10/266 (3%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ- 613 +L + +I+ + L A+ AE+ + KS ++ +SHE+RTPL +I+G+S++++ Q Sbjct: 412 ALLIDEIAAHEVTSKDLQDARIAAERANDAKSRYVIGISHELRTPLNSILGYSQLLQKQE 471 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + G I RSG + +++ LLD+++IE+GK++L+ V + + I Sbjct: 472 QLSEQGKMAL----GVISRSGQHLTSLIDGLLDLARIETGKISLNVVDVHFPNFIEQIIQ 527 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + Q +K + N+P + D + ++Q+ +N+L NA+ FT SG I Sbjct: 528 MFQPQFEQKNLQFVYEIGENLPHYVRTDKKRLEQVLINLLGNALKFTTSG--TITLKVEY 585 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + +RDTG G+ +LE+ PF + N Q G GLGLP+ K +VD G+ Sbjct: 586 RFQTAYFEIRDTGCGIAEADLERIFNPFERGSNVVQGGFTGIGLGLPIVKLLVDLLGGQL 645 Query: 793 YIFSTPAKGTLIEIIF--PLYDTSHP 816 + S +G+ +I F P + HP Sbjct: 646 SVTSQLNQGSQFKIKFYLPSKEVVHP 671 >gi|188582812|ref|YP_001926257.1| integral membrane sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179346310|gb|ACB81722.1| integral membrane sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 1120 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 137/246 (55%), Gaps = 10/246 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I+ K KL AK+ AE + KS ++ +SHE+RTPL A++G++++++ P Sbjct: 633 EIAAHKVTDAKLQQAKETAEAANLAKSRYVVGISHELRTPLNAVLGYAQLLEGDPSIP-- 690 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 PR I RS + +++ LLDIS++E+G++ H + L + +++ + +V+L A Sbjct: 691 EPRR-NGIRVIRRSAQHLSGLIDGLLDISRMEAGRLQTHRNEIRLADFLAQIVDMVRLQA 749 Query: 680 NEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + R + +P ++A D + ++QI LN+LSNAI FT G++ + T+ + + Sbjct: 750 EGAGLKFRFTRPEILPAVVATDEKRLRQILLNLLSNAIKFTAE-GEVALEMTY-RGQVAV 807 Query: 739 LRVRDTGVGMTNYELEKAMKPF--GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +RDTG+G+ +L + +PF G +P ++ GTGLGL +A + G+ + S Sbjct: 808 FTIRDTGLGIPEADLGRIFEPFERGSMPAARA--APGTGLGLTIAGLLAQVMGGEITVES 865 Query: 797 TPAKGT 802 +GT Sbjct: 866 RVGQGT 871 >gi|73668223|ref|YP_304238.1| sensory transduction histidine kinase [Methanosarcina barkeri str. Fusaro] gi|72395385|gb|AAZ69658.1| sensory transduction histidine kinase [Methanosarcina barkeri str. Fusaro] Length = 445 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 83/278 (29%), Positives = 155/278 (55%), Gaps = 8/278 (2%) Query: 539 LSLRIIIKKLPFSSCYSL------TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 LS R++++ + S+ ++ ++ + E + KN+ AKK + + K+ + + Sbjct: 166 LSGRVLLELMEESNVFTKRKGKLESLRSLEEKIELKNEFLKAKKDIDASNWAKNGLIVNM 225 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+RTPL ++IGFS+++ FG L N R +Y + I SG +L+I+++LLDIS++E+ Sbjct: 226 NHELRTPLNSVIGFSDLLLEGAFGSL-NTRQSKYVSNILISGKNLLEIISNLLDISRLEA 284 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 G+ NL++E V + + E + +A+ K++ I ++ I AD ++QI +++ Sbjct: 285 GEKNLNYEDVDIASLLGEVRMSLLSFASSKKVSIEIKVDASLENIRADRTKLRQILYSLM 344 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 +NAI TP ++ +S + ++V D+G+G++ + E+ + PF Q S Sbjct: 345 NNAIKLTPEKKKVTVSALKKEG-MLEIKVSDSGIGLSKEDHERMLMPFIQADLSTTSGYG 403 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL +AK +D + GK ++ S KG+ PL Sbjct: 404 GTGLGLYIAKNFIDIHGGKIWVESKGGKGSTFIFTLPL 441 >gi|330953354|gb|EGH53614.1| response regulator receiver [Pseudomonas syringae Cit 7] Length = 1172 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 127/232 (54%), Gaps = 3/232 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ S +KS+FLA +SHE+RTPL + + ++++ + G +++A I +GN +L Sbjct: 488 QRASKYKSEFLANMSHELRTPLNSSLILAKLLA-ENPGENLTAEQVKFAESIYSAGNDLL 546 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++ND+LDISK+E+GK+ + E S+ V +L Q A EK++ P +L Sbjct: 547 NLINDILDISKVEAGKLEVRPENSSVPRLVEGLRTLFQPLAAEKKLAFTVDIQAGAPTML 606 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + ++QI N+LSNAI FT +G ++ + H + VRD+G+G+ + Sbjct: 607 FTDRQRLEQILKNLLSNAIKFTEAGSVSMVVSRH-PGAGIAFIVRDSGIGIAEEHQQGIF 665 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q + R GTGLGL +++ + G + S P +G++ ++ P Sbjct: 666 EAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLP 717 >gi|323493897|ref|ZP_08099014.1| sensor protein TorS [Vibrio brasiliensis LMG 20546] gi|323311838|gb|EGA64985.1| sensor protein TorS [Vibrio brasiliensis LMG 20546] Length = 966 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 79/252 (31%), Positives = 133/252 (52%), Gaps = 9/252 (3%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 S QE + A++ AE+ S KS FLA +SHEIRTP+ ++G + ++K+ + Sbjct: 447 SRLNQEVENHARARQEAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLKDTGL----DR 502 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + Y + I+RSG +L I+ND+LD SKIE+G + + +L V + L+ A E Sbjct: 503 QQGHYVDVINRSGTGLLAILNDVLDYSKIEAGHLEIRPVDFNLYAMVDDTKQLLNGRAQE 562 Query: 682 KRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--VI 738 K + + +++ + D+ + Q+ N++ NAI FT G + I H +++ V+ Sbjct: 563 KSLQLEYFIESDVDKFWFGDMTRIGQVLNNLVGNAIKFTDKGN-VDIYVAHDPDQQGHVL 621 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTGVG++ E + F Q +G GTGLGL ++K +V+A G+ ++ S Sbjct: 622 FEVSDTGVGISEQEQQTLFDAFTQASGGLSSKG-GTGLGLAISKRLVEAMGGEIHLESEI 680 Query: 799 AKGTLIEIIFPL 810 +G+ PL Sbjct: 681 GEGSRFWFSVPL 692 >gi|297565379|ref|YP_003684351.1| multi-sensor signal transduction histidine kinase [Meiothermus silvanus DSM 9946] gi|296849828|gb|ADH62843.1| multi-sensor signal transduction histidine kinase [Meiothermus silvanus DSM 9946] Length = 827 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 127/230 (55%), Gaps = 11/230 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+F+A VSHE+RTPL AI+GF+E++ + PL + E+ I +G + ++V++L Sbjct: 599 KSEFIAAVSHELRTPLAAIMGFAELLTSGEI-PLEEGQ--EFLRIIYDNGRRLKNMVDNL 655 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---ILADL 701 LD S++E+G+ ++ PV L+E + A L + F IP + AD Sbjct: 656 LDSSRLEAGRFEVYKRPVQLEETLRGVADSFTGVAQ----LSQVEFHREIPPLPPVEADP 711 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 + Q+ N+LSNA FTP GG++ + + + + V DTG G+ E + + +G Sbjct: 712 DRIGQVMGNLLSNAFKFTPKGGRVTLRAM-LEGDSLKIEVEDTGPGIPESERSRLFQRYG 770 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + ++ GTGLGL ++KA+V+A+ G+ ++ S KGT + PL+ Sbjct: 771 RTQSAVSRGVSGTGLGLYISKAIVEAHGGRIWVESEVGKGTTFSLTLPLH 820 >gi|254427119|ref|ZP_05040826.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] gi|196193288|gb|EDX88247.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] Length = 1118 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 80/262 (30%), Positives = 137/262 (52%), Gaps = 6/262 (2%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + M +I ++ L AK++AE + KS +L +SHE+R+PL A G++++++ Sbjct: 642 MLMEEIKAHEKTDLALQAAKELAEAANQAKSRYLTGLSHELRSPLNAAFGYAQLLEQDPS 701 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P N R + I RS + D++ LL+ISKIE+G++ L+ V + E + E +++ Sbjct: 702 IP-ENRR--DAIGAIRRSTEHLSDLIEGLLEISKIEAGRLELYRNQVCVPELIDELVTMF 758 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 QL A EK I + +P + D + ++QI +N+LSNAI FT G ++ T N Sbjct: 759 QLQAAEKGIGFEFRSKSQMPTWVTTDEKRLRQILINLLSNAIKFTREG--LVTLTFRYRN 816 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + + DTGVG+ +L++ +PF ++ GTGLGL + + + D G + Sbjct: 817 QVAEFVIADTGVGIDEEDLKRIFRPFERVRKPGIPSVHGTGLGLTITQLLADIMGGDIQV 876 Query: 795 FSTPAKGTLIEIIFPLYDTSHP 816 S P +G+ + L S P Sbjct: 877 SSVPGQGSEFRLSVMLSRLSSP 898 >gi|186682168|ref|YP_001865364.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186464620|gb|ACC80421.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 706 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 80/246 (32%), Positives = 126/246 (51%), Gaps = 5/246 (2%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 LSHA+ AE+ S KS+FLA SHE+RTPL + + + +++K + + R EY + Sbjct: 451 LSHARAAAEEVSRLKSNFLASTSHELRTPLASTLNYLKLLKERLYEDEDELR--EYIDGA 508 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 +S ++ I+ND+LDI+KIE G++ L E V L + + E L + K I + + Sbjct: 509 YQSTQNLVTIINDVLDIAKIEDGRIALDLETVYLQQLLQEQCFLSGAESRYKAIPL--TL 566 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 I + AD V+Q+ N+L NA FT G + + ++ + V DTG+G+ Sbjct: 567 DCEIETVFADKIKVRQVMTNLLDNAFKFTDEGQIDVRAVVDSTGTMAQISVHDTGIGIEM 626 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-AKGTLIEIIFP 809 E+ PF Q S Q GTGLGL + K +V+ GK ++ S +G + P Sbjct: 627 ENSEQLFSPFVQADGSAQRSYGGTGLGLTICKRLVELMGGKIWLESPGLGQGNTVTFTLP 686 Query: 810 LYDTSH 815 L + S Sbjct: 687 LNEQSQ 692 >gi|149277393|ref|ZP_01883534.1| two-component system sensor histidine kinase [Pedobacter sp. BAL39] gi|149231626|gb|EDM37004.1| two-component system sensor histidine kinase [Pedobacter sp. BAL39] Length = 861 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 81/269 (30%), Positives = 141/269 (52%), Gaps = 13/269 (4%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DI++ + +++L A+ AE K FL+ +SHEIRTPL +IIG++E+IK Q Sbjct: 318 LTDITKSNRYRSELELARDEAEYHGRAKQRFLSNMSHEIRTPLQSIIGYAELIKYQ---- 373 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 P + + + I S +L IVN++LD ++I SGK +P + + E I+++Q Sbjct: 374 -DKPDHKDI-DAIYHSSEHLLQIVNEILDYNRIISGKFTFADKPFDIARLLDEVIAVMQP 431 Query: 678 YANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---S 733 A K + + + + R + D +KQI N++ NAI FT G++++S ++ Sbjct: 432 QAERKSLRLVSDIELHELRFINGDAFRLKQILYNLIGNAIKFTLE-GEVVLSVSYKRQFD 490 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQI--PNSQQIRGEGTGLGLPLAKAMVDANMGK 791 N VRDTGVG+T + F Q+ P ++ + G GLGL + K++V+ G+ Sbjct: 491 NLHFNFMVRDTGVGLTEAQTGVIFNEFEQVQGPENEVLNKSGAGLGLTIIKSLVENQGGR 550 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 Y+ S P G++ + + P + + Sbjct: 551 IYVKSKPGAGSVFTVYLTFKLSESPGELV 579 >gi|86607271|ref|YP_476034.1| sensory box histidine kinase [Synechococcus sp. JA-3-3Ab] gi|86555813|gb|ABD00771.1| sensory box histidine kinase [Synechococcus sp. JA-3-3Ab] Length = 667 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 100/379 (26%), Positives = 183/379 (48%), Gaps = 40/379 (10%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L +++ + D +++ E +L N A S++FG+ E +L KP Sbjct: 287 KLETLVFSIVDAAILLDAEFRVLLLNPAASRMFGWEGEPVLGKP---------------- 330 Query: 513 LTEILSLDLRQTLEK----ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE- 567 L E+L DLRQ L + I G + E++ R+ + P + + +S+ +++ Sbjct: 331 LPELLPEDLRQQLARPLMQIARGDQEAEEI---RVNLSG-PTKRVIRILLSPVSDPRRQN 386 Query: 568 -KNKLSHAKKIAEKE--SSHKSDFLARVSHEIRTPLTAIIGFSEVIK--NQRFGPLGNPR 622 K + + I + + K+ F++ +SHE+RTPL +I F E + ++ P Sbjct: 387 LKGIVMTVQDITREVELNEAKAQFISNISHELRTPLFSIKSFIETLYEYGEQMSPEERLD 446 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y+E AN R + + +VND+LD+S++ESGK HFE V + + + + L A +K Sbjct: 447 YLEIAN---RETDRLTRLVNDVLDLSRLESGK-QYHFEAVDIAAVIEQTLRTHHLQARDK 502 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-----THTSNEEV 737 I +R ++P + + + Q+ N+L NA+ FTPSGG + + S + V Sbjct: 503 GIQLRKFVDPDLPLVWGNYDLLLQVMTNLLGNALKFTPSGGLVTVHAHPVVQADGSPQAV 562 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V DTG+G+ + E+ F ++ N EGTGLGL + + +++ + + + S Sbjct: 563 RVAVADTGIGIAPEDQERIFDRFFRVENRVHTL-EGTGLGLAIVRNILEKHHTRICLESK 621 Query: 798 PAKGTLIEIIFPLYDTSHP 816 +G+ LY + P Sbjct: 622 LEQGSTFWFDLHLYTENGP 640 >gi|87308947|ref|ZP_01091085.1| Response regulator receiver:ATP-binding region,ATPase-like:Histidine kinase A, N-terminal:Hpt [Blastopirellula marina DSM 3645] gi|87288290|gb|EAQ80186.1| Response regulator receiver:ATP-binding region,ATPase-like:Histidine kinase A, N-terminal:Hpt [Blastopirellula marina DSM 3645] Length = 837 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 79/264 (29%), Positives = 130/264 (49%), Gaps = 16/264 (6%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 K+ + K+ A+ + K FLA +SHEIRTP+ IIG +E++ P + EY Sbjct: 157 KDVIQSQKESADAANRAKGQFLANMSHEIRTPMNGIIGMTELLLETELAP----QQHEYL 212 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I S + ++ ++ND+LD SKIE+GK+ + P L E + + + + A+ K + + Sbjct: 213 QMIKTSADCLVSVINDILDFSKIEAGKLEIESIPFQLRENLGDLMKTLAFRAHGKGLELV 272 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRD 743 ++P R+ D ++QI +N++ NAI FT G ++ + S + +L V D Sbjct: 273 AHVRPDVPWRMTGDPGRLRQILVNLVGNAIKFTEHGEIVVRVDIDEISETDALLHFTVCD 332 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ L+K F Q + + GTGLGL + +V+ GK ++ S G+ Sbjct: 333 TGIGIPEAALQKIFAAFEQADGTTTRKFGGTGLGLSICSRLVELMHGKIWVESQVHVGSQ 392 Query: 804 IEIIFPL------YDTSH--PHDC 819 L YD H P DC Sbjct: 393 FHFTAQLGIDANSYDERHIPPDDC 416 >gi|258592063|emb|CBE68368.1| Sensor protein (fragment) [NC10 bacterium 'Dutch sediment'] Length = 316 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 88/249 (35%), Positives = 136/249 (54%), Gaps = 18/249 (7%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE+ + KS FLA +SHE+RTPL++IIGF+E++++ FG L N + + I S + Sbjct: 67 AEEATRQKSAFLANISHELRTPLSSIIGFTELLQSGAFGTL-NEKQAHFVGNILLSSRHL 125 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++NDLLD+SKIE+GK+ + EP L E + + ++ A++K I + + I I Sbjct: 126 LTLLNDLLDLSKIEAGKLIIEPEPFVLQEVIETTVGTLRPQADQKHQNIEVTVEDGISLI 185 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIII----------STTHTSNEE------VILRV 741 AD KQI N+LSNAI F+ GG+I++ +T HT E V + V Sbjct: 186 NADPTRFKQILYNLLSNAIKFSHKGGRILVTSRVVPSVLLTTEHTGPERTSGKKIVEITV 245 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAK 800 DTG+G++ +L K + F Q+ +GTGLGL L K +V+ + G + S + Sbjct: 246 ADTGIGISAEDLSKLFQRFTQLQAPTVKHYQGTGLGLALTKYLVELHGGSIHAHSDGEGR 305 Query: 801 GTLIEIIFP 809 G + P Sbjct: 306 GATFAVRLP 314 >gi|302382337|ref|YP_003818160.1| multi-sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302192965|gb|ADL00537.1| multi-sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 915 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 101/411 (24%), Positives = 199/411 (48%), Gaps = 44/411 (10%) Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 G+ + D+ +++++E + + + SD I +G+I + +V G D Sbjct: 385 GVFQDVTDSVRSQKRIEASEARYRLLADRASDVIVTYGVDGLIQYISPSVEAATGIAPGD 444 Query: 492 ILRKPFT-VFLEQNTPSVMNH-----------------YLTEILSLDLRQTLEKITLGST 533 ++ +P T + L+++ P++ Y + S ++R + TL Sbjct: 445 LVGRPVTHLILDEDVPALSQRFREMVRAGPGTVQPGVVYRARMASGEIRWMEARTTLIRD 504 Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 +++ +++ DI+E K+ +++L A+ +AE + KS+FLA +S Sbjct: 505 DHGRVVQFHDVVR-------------DINETKRLEDELIAARDVAEAAARSKSEFLANMS 551 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HE+RTPLT++IGFS ++++ P R YA+ I S +L ++ND+LD SK+E+ Sbjct: 552 HELRTPLTSVIGFSGLLQSSEALPAAERR---YADRIATSSEALLSVINDILDYSKLEAD 608 Query: 654 KMNLH---FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIAL 709 + L F+P ++ A + S+V+ K + + + A+++P I+ D ++Q+ L Sbjct: 609 AVGLDPVAFDPTAMARATA---SIVETQCEAKGLSLVITTADDLPGAIMGDEGRLRQVTL 665 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 N LSNA+ FT +G I + + + + V D+G+G+ +++ + F Q S Sbjct: 666 NFLSNAVKFTNTGE--IRLDVGSVDGRMRVAVTDSGIGVAADKIDALFERFTQADASTTR 723 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 GTGLGL + + +++ G+ S P G+ P+ + P D + Sbjct: 724 VYGGTGLGLAICRRLIEMMGGEIGATSRPGHGSTFWFEVPMI-AAEPLDAM 773 >gi|254445929|ref|ZP_05059405.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] gi|198260237|gb|EDY84545.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] Length = 1263 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 126/249 (50%), Gaps = 12/249 (4%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + +L HAK AE+ KS FL +SHEIRTP+ AI+GFSE++K++ +IE Sbjct: 878 ERTKELEHAKLRAEESDQLKSSFLMNMSHEIRTPMNAILGFSELLKDKDIDEKDRNEFIE 937 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I +G +L +++D+LDIS I+SG++ L E +DE ++E L Y + L Sbjct: 938 ---IIGSNGRSLLVLIDDILDISLIQSGRVKLRNEVFYIDEVLNE---LKDFYRLKTTSL 991 Query: 686 IRTSFAN----NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + + ++ AD +Q+ N+L NA+ FT G I N E + V Sbjct: 992 VSVELEDVELFKGLKLNADSVRFRQVLNNLLGNALKFTEKGS--IRFGCKPRNGEALFHV 1049 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ E ++ F +I N GTG+GL + + ++ G ++ S P +G Sbjct: 1050 VDTGLGIDKIEQKRVFDAFYKIENDSSKLFPGTGIGLSICRKLISGMGGDIWVESQPGEG 1109 Query: 802 TLIEIIFPL 810 ++ PL Sbjct: 1110 SVFYFTLPL 1118 >gi|196231944|ref|ZP_03130800.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196224066|gb|EDY18580.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 739 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 98/379 (25%), Positives = 178/379 (46%), Gaps = 13/379 (3%) Query: 444 KRKMEIEVMQLCSILEATSDGIA-----IINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 +R+ EI + Q D +A +++ G +++ N K GY ++I+ K F Sbjct: 230 RRQAEIALRQSEEQFRLLVDCVAEYAIFMLDPTGHVVTWNSGAEKAKGYLAKEIIGKHFG 289 Query: 499 VFL--EQNTPSVMNHYLTEILSLD-LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 F E + N L E S +R ++ T + + + I +S Sbjct: 290 CFYTKEDRDTDLPNRLLEEARSHGHVRAQGTRVRKDGTTFQADVLITAIRDSTGQLQGFS 349 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII-GFSEVIKNQR 614 DI+E + ++ AK AEK + K +FLA +SHE+RTPLT +I G S +I+N+ Sbjct: 350 KVTRDITE-QLRIREMETAKLTAEKANEAKDNFLAVLSHELRTPLTPVIAGASYLIENR- 407 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 + + +E+ + I R+ L +++DLLD+++I GKM LH E V + A+ + ++ Sbjct: 408 -SAISDEEMLEHLHTIRRNAQLEAQLIDDLLDLTRISRGKMILHPEAVDIHAALRDVGAI 466 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 +Q K++ + D ++Q+ N+++NAI FTP GG+I + + + S Sbjct: 467 LQEEIQRKQLALSYDLQATGYWSWVDPTRIRQVFWNLINNAIKFTPEGGRIKVRSANPSP 526 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + + V D+G+G+ + ++ F Q + G GLGL + + +V+ G + Sbjct: 527 TCLRVDVSDSGLGIAPEQQQRIFGAFEQGEVDTTRKFGGLGLGLAITRHLVEQQNGSISV 586 Query: 795 FS-TPAKGTLIEIIFPLYD 812 S KG + L + Sbjct: 587 TSEGKGKGACFTVTLALLE 605 >gi|153869352|ref|ZP_01998985.1| Response regulator receiver [Beggiatoa sp. PS] gi|152074125|gb|EDN71014.1| Response regulator receiver [Beggiatoa sp. PS] Length = 1610 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 83/279 (29%), Positives = 141/279 (50%), Gaps = 35/279 (12%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E K+ + L + E S +KS+FLA +SHE+RTPL +++ ++++ R G L + + Sbjct: 882 EMKKTQVALETKARELELASRYKSEFLANMSHELRTPLNSLLILAQLLTENRAGNLTD-K 940 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +EYA I +G+ +L ++N++LD+SK+E+G++ +H E VS + V + A E+ Sbjct: 941 QVEYAKTIHSAGSDLLTLINEILDLSKVEAGRIEVHAEAVSFTDLVEMIEQKFRHVAAEQ 1000 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-----QIIISTT--HTSN 734 ++ + + AN++P IL D + +KQI N+LSNA FT G Q + T ++ Sbjct: 1001 KLEFQITVANDLPPILHTDRQRLKQILNNLLSNAFKFTSQGAVKLDIQFLGENTPGYSQQ 1060 Query: 735 E----------------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 E ++ V DTG+G+ + E + F Q+ S R Sbjct: 1061 EGVRGRTTPGDFQPDGIKGREKSQIAFSVTDTGIGIPTDKQETVFEAFQQVDGSTSRRYG 1120 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 GTGLGL +++ + G + S KG+ F LY Sbjct: 1121 GTGLGLSISRQLARLLGGDILLHSEADKGS----TFTLY 1155 >gi|163847332|ref|YP_001635376.1| ATPase domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222525178|ref|YP_002569649.1| integral membrane sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163668621|gb|ABY34987.1| ATP-binding region ATPase domain protein [Chloroflexus aurantiacus J-10-fl] gi|222449057|gb|ACM53323.1| integral membrane sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 917 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 139/257 (54%), Gaps = 13/257 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I E ++ + +L A+ AE S KS FLA +SHE+RTPLTAIIG+S++++ + Sbjct: 371 EIQERRRVEQELIKARDAAEAASRAKSTFLATMSHELRTPLTAIIGYSQLLEQL----VS 426 Query: 620 NPRYIEYANYIDR---SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675 Y A+ + R +G +L ++ND+LDISKIE+G+M + E + + V A++ + Sbjct: 427 KGIYDTVAHDVGRIRAAGTHLLALINDILDISKIEAGRMTVSVEYADVADLVRSAVNTII 486 Query: 676 -QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 Q+ N R+ + +I + +D V+Q +N+LSNA FT G + + + + Sbjct: 487 PQIEKNRNRLHVHCP--PDIGILNSDATKVRQALINLLSNAAKFTEDGEVTLTVSRYQKD 544 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + R V DTG+G+ + +K K F Q+ +S + GTGLGL L++ + + G+ Sbjct: 545 HQTWFRFVVADTGIGIPADKHDKLFKAFSQVDDSPTRKYGGTGLGLALSQRLCELIGGRI 604 Query: 793 YIFSTPAKGTLIEIIFP 809 + S G+ + P Sbjct: 605 TMESAVGVGSTFTMEIP 621 >gi|283782020|ref|YP_003372775.1| histidine kinase [Pirellula staleyi DSM 6068] gi|283440473|gb|ADB18915.1| histidine kinase [Pirellula staleyi DSM 6068] Length = 926 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 135/244 (55%), Gaps = 4/244 (1%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + + L A+ AE+ + KS F+A +SHEIRTP+TAI+G+ +++ + + + Sbjct: 476 EMQFQAKALEAARSEAERANHTKSQFVANMSHEIRTPMTAILGYVDMLLDDADAHPVSEK 535 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + + I +G +L+I+ND+LDISKIE+GK+ + S+ + V + +L++ A K Sbjct: 536 WKQPLATIKSNGQHLLEIINDILDISKIEAGKLTIEIIECSVPQLVGDVTNLLRHRAEGK 595 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVI 738 + + F + IP I +D ++Q+ LN++ N+I FT G ++ + N ++ Sbjct: 596 GLALAVKFNSPIPETIHSDPTRIRQVLLNLVGNSIKFTNHGEVRVELEMFYDDPENPQLQ 655 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 L V D+G+GM + ++ + +PF Q +S R GTGLGL + K + + G + S Sbjct: 656 LSVVDSGIGMDDEQIARLFQPFVQADSSTTRRFGGTGLGLTITKRLAEMLGGSITVKSQI 715 Query: 799 AKGT 802 G+ Sbjct: 716 GHGS 719 >gi|325921207|ref|ZP_08183071.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC 19865] gi|325548314|gb|EGD19304.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC 19865] Length = 477 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 126/241 (52%), Gaps = 8/241 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S K+ FLA + HE+RTP+T ++G SE++ + + Y I R Sbjct: 193 HKQELAEQGSLAKTRFLATLGHEVRTPMTGVLGMSELLLKTSL----DNKQRSYTESIRR 248 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--RILIRTSF 690 +G +L +VND LD+++IESG++ L +P S+ + V+E L+ A E+ R + Sbjct: 249 AGAHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEGLMAPLAQERGLRFSLEVGL 308 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 +I D+ ++QI LN+LSNAI FT G + TT S + + V DTG G+ Sbjct: 309 LGDITAS-GDVTRIRQILLNLLSNAIKFTERGVVGLKLTTLGSYQGLRFEVADTGPGINA 367 Query: 751 YELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + + F Q ++ R G+GLGL + + + A G + S GT + P Sbjct: 368 EQKARLFQRFEQGDGARTTSRYGGSGLGLAICQELALAMGGHVEVISRLGAGTRFVVDLP 427 Query: 810 L 810 L Sbjct: 428 L 428 >gi|71735952|ref|YP_274795.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556505|gb|AAZ35716.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] Length = 1170 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 127/232 (54%), Gaps = 3/232 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ S +KS+FLA +SHE+RTPL + + ++++ + G +++A I +GN +L Sbjct: 488 QRASKYKSEFLANMSHELRTPLNSSLILAKLLA-ENPGENLTAEQVKFAESIYSAGNDLL 546 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++ND+LDISK+E+GK+ + E S+ V S+ + A EK++ P +L Sbjct: 547 NLINDILDISKVEAGKLEMRPENSSVSRLVEGLRSMFKPLAAEKKLAFTVDIQAGAPTML 606 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + ++QI N+LSNAI FT +G + + + ++ VRD+G+G+ + Sbjct: 607 FTDRQRLEQILKNLLSNAIKFTEAGA-VSMVVSRQPGAGIVFIVRDSGIGIAEEHQQGIF 665 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q + R GTGLGL +++ + G + S P +G++ ++ P Sbjct: 666 EAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLP 717 >gi|317050810|ref|YP_004111926.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum indicum S5] gi|316945894|gb|ADU65370.1| ATP-binding region ATPase domain protein [Desulfurispirillum indicum S5] Length = 864 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 135/249 (54%), Gaps = 16/249 (6%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+ AE + KS FLA +SHE+RTPL+ IIG +++ + R L N + EYA Sbjct: 197 ELERARDQAEGANRAKSQFLANMSHELRTPLSGIIGMVDLLLDTR---LDNEQQ-EYARL 252 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQLYANEKRILI 686 S + +L ++ND+LD SKIE+GK+ + F SL E V+E +L A +K+ ++ Sbjct: 253 ASDSAHALLALINDILDFSKIEAGKLEIEEAEFSLGSLTEGVTELFAL----AAQKKGIV 308 Query: 687 RTSFAN-NIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--V 741 TS+ + +P + D ++Q+ N+LSNA+ FT G Q+ + + ++R V Sbjct: 309 LTSYVDPQLPAYVRGDALRLRQVLANLLSNALKFTEKGSVQLQVKILGDGGQAPLIRFEV 368 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ E+ + F Q +S + GTGLGL + + +V+ G+ I S +G Sbjct: 369 CDTGIGVDAEVAERLFQSFTQADSSTTRKYGGTGLGLAICRNLVELMGGEIGIESRLGQG 428 Query: 802 TLIEIIFPL 810 + PL Sbjct: 429 STFWFTLPL 437 >gi|293372990|ref|ZP_06619359.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] gi|292632058|gb|EFF50667.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] Length = 820 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 130/257 (50%), Gaps = 12/257 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E + K +L +K+ AE S KS FLA +SHEIRTPL AI+GFS +I Sbjct: 421 DITELEMIKRELQSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESDDAEER 480 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 Y N ++ + +L ++N++LD+SKIESG + F P SL E + ++ Sbjct: 481 KT----YYNIVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCRE-VHDAHIFR 535 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + + + ++ I D V Q+ N++ NA+ FT G I ++ +++ Sbjct: 536 TPQGVSLVYESSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS--ISYGYKLADNQIVF 593 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG G+ ++ + + F ++ N Q GTGLGL + K++V+ GK + S Sbjct: 594 HVTDTGTGIEPEKVGRVFERFAKLNNHAQ----GTGLGLSICKSIVERLGGKISVSSEFG 649 Query: 800 KGTLIEIIFPLYDTSHP 816 KGT P Y ++P Sbjct: 650 KGTTFTFTLP-YTIANP 665 >gi|291523426|emb|CBK81719.1| Signal transduction histidine kinase [Coprococcus catus GD/7] Length = 1068 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 132/253 (52%), Gaps = 13/253 (5%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + L A + AE + K++FL+ +SH+IRTP+ AI+G + + R IE Sbjct: 540 ESRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMNAIVGLTAIAGAN---VESKDRVIE 596 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I S +L ++N++LD+++IESGKM L E +L E V I+L + +E + Sbjct: 597 CLGKITESSRHLLGLINEVLDMARIESGKMTLAQEDFNLSELVDNLITLTKPMLDEHKHN 656 Query: 686 IRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---- 739 N+I + D ++Q+ +N++SNAI +TP GG II S N L Sbjct: 657 FDIHI-NHIEHEAVCGDSLRIQQVFVNLMSNAIKYTPDGGNIIFSIEEKPNGFSELGCYE 715 Query: 740 -RVRDTGVGMTNYELEKAM-KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + D G+GM+ E +K M PF + + + R +GTGLG+ +++ +V+ G + ST Sbjct: 716 FTIEDNGIGMST-EFQKIMFDPFSRADDHRTTRVQGTGLGMAISRNIVNLMNGNIKVDST 774 Query: 798 PAKGTLIEIIFPL 810 KGT I + L Sbjct: 775 LHKGTRITVTIYL 787 >gi|317052256|ref|YP_004113372.1| PAS sensor protein [Desulfurispirillum indicum S5] gi|316947340|gb|ADU66816.1| PAS sensor protein [Desulfurispirillum indicum S5] Length = 1253 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 103/358 (28%), Positives = 170/358 (47%), Gaps = 19/358 (5%) Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI-LSL 519 T I I N GII N+A GY E+++ K +PSV + + I Sbjct: 455 TDSMILITNHRGIIEYANQAFFAQTGYDREEVIGKSPRF----PSPSVESEIWSVISAGQ 510 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579 R +E +S+ I + Y D++E K ++ L AK +AE Sbjct: 511 TWRGEMESRKKNGESYWTSMSVTPIKDTHGHVTHYVTVEEDMTERKAMEDALREAKNVAE 570 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 + S KS FLA +SHEIRTP+ I+G +E+ RY+ A+ S +L Sbjct: 571 EASRAKSIFLANMSHEIRTPMNGILGMTELALQTELSTT-QRRYLTIAH---NSAKSLLV 626 Query: 640 IVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 I+ND+LD SK+E+G++ L F+PV E V ++I+ A K I + + + Sbjct: 627 IINDVLDFSKVEAGEIRLEQTSFDPVETVENVMQSIA---YSAYSKGIELMNHIDHRLSH 683 Query: 697 -ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVIL--RVRDTGVGMTNYE 752 ++ D ++QI N+L NA+ FT +G ++ + S+ E L RV DTG+G+ + Sbjct: 684 YLVGDPTRLQQILNNLLGNAVKFTDTGHVLLDVEVQGESDSEAHLHFRVIDTGIGIPANK 743 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 ++ + F Q+ S + + GTGLGL + + +V G+ ++ S +G+ + P Sbjct: 744 IDSIFESFSQVEASDRRKFGGTGLGLAITRKLVHLMNGRIWVESHMGEGSTFHFVIPF 801 >gi|330816290|ref|YP_004359995.1| hypothetical protein bgla_1g13650 [Burkholderia gladioli BSR3] gi|327368683|gb|AEA60039.1| hypothetical protein bgla_1g13650 [Burkholderia gladioli BSR3] Length = 779 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 103/373 (27%), Positives = 166/373 (44%), Gaps = 29/373 (7%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L +++A+ D I + + I S N A ++FGYP D L + + + P + + Sbjct: 258 LRRLVDASPDAIIGVGADRRITSWNPAAQRMFGYPEADALGRDIDMLV---APRWLGRHP 314 Query: 514 TEILSLDLRQT---LEKITLGSTKEEKLLSLRIIIKKLPF----SSCY--SLTMHDISEW 564 ++R+ L+ + LG + R+ + P C SLT+ D Sbjct: 315 IATEVGEVREAIGGLDVLCLGGDGKR----FRVTLAASPVFDEQQRCVALSLTLRDTRAQ 370 Query: 565 KQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 ++ + + H A++ A+ + K + LA VSHE+RTPL I G+ EV++N P Sbjct: 371 RRRERRNHHRLRGARDARRQADTSNRLKDELLAIVSHELRTPLNVIYGWVEVMRN----P 426 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + + + IDRS + +V D+LD S + +GK+ L PV L V + Sbjct: 427 IDGALQRQAIDAIDRSARSLSRMVADILDASSLATGKLRLDPMPVDLVRVVGDVAGSFGT 486 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A I + T A + D +KQ+ N+LSNA FTP GG++ I T V Sbjct: 487 TAGHDGITLETHCALEACVVSGDAERLKQMLSNLLSNAFKFTPRGGRVTIGLTR-DEARV 545 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 +L V DTG G+ L + F + NS G GLGL + + + + + G + S Sbjct: 546 LLTVTDTGQGVVADFLPHVFEAFRRAENSPASPKRGLGLGLSIVRHIAELHGGAVRVASA 605 Query: 798 PAK-GTLIEIIFP 809 GT E+ P Sbjct: 606 GRDLGTTFEVALP 618 >gi|302877319|ref|YP_003845883.1| integral membrane sensor signal transduction histidine kinase [Gallionella capsiferriformans ES-2] gi|302580108|gb|ADL54119.1| integral membrane sensor signal transduction histidine kinase [Gallionella capsiferriformans ES-2] Length = 509 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 87/255 (34%), Positives = 130/255 (50%), Gaps = 20/255 (7%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE- 625 E +L+H AE S KSDFLA +SHEIRTP+ +IIGFSE+ L NP + Sbjct: 261 ESVQLAHVA--AEAASRAKSDFLANMSHEIRTPMNSIIGFSEL-------ALDNPDPKDQ 311 Query: 626 --YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + + I S N++L I+ND+LD+SKIESG+M L DE + L A E Sbjct: 312 QIFLSQILESSNMLLGILNDILDLSKIESGRMMLDVASFDFDELLGSIERSFALRAQEAG 371 Query: 684 I---LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEEVIL 739 + L+R + + L D+ ++QI +L NA+ FT G + + + +V L Sbjct: 372 LGFTLLRLGESGRV--FLGDVLRLRQILTILLGNAVKFTSQGETSLEVKQIRVPDGKVRL 429 Query: 740 R--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 ++DTG+GM+ ++ +PF Q NS R GTGLGL +A+ + G+ + S Sbjct: 430 EFSIQDTGIGMSAETIKNLFQPFVQADNSITRRFGGTGLGLVIARNLAQMMHGRITVESQ 489 Query: 798 PAKGTLIEIIFPLYD 812 G++ L D Sbjct: 490 LGVGSVFRFQVTLLD 504 >gi|157693310|ref|YP_001487772.1| sensor histidine kinase PhoR [Bacillus pumilus SAFR-032] gi|157682068|gb|ABV63212.1| sensor histidine kinase PhoR [Bacillus pumilus SAFR-032] Length = 580 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 104/369 (28%), Positives = 171/369 (46%), Gaps = 47/369 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E GI +I++ G I NR RK F V Q Sbjct: 236 EMQRDRLQTVIENIGAGIILIDKMGYIHLVNRT------------FRKQFKV---QKHIY 280 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 + Y ++ + +++I + TK K L L + I++ F Sbjct: 281 MHKLYHEAFTHEEIIELIDEIFMTETKVRKFLRLAVDIERRYFQVDGVPILSTDDEWKGI 340 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HD++E KQ L +K DF+A VSHE++TP+T+I GFSE + + Sbjct: 341 VLVFHDVTETKQ----LEQMRK----------DFVANVSHELKTPITSIKGFSETLLD-- 384 Query: 615 FGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + + + E+ + I + + ++ DLLD+SKIE + L+ + + E + E Sbjct: 385 -GAIDDKEALTEFLSIILKESVRLETLIQDLLDLSKIEQQQFKLNIQEANATEILQEIQV 443 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 L+ A EK I + ++AD +KQI LN+++NA+ +TP GG + IS Sbjct: 444 LLNQKATEKGIQLHVRVPKEPVYVMADPLRLKQIFLNLVNNALTYTPEGGSVTIS-ARPR 502 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 V DTG+GM E+ + + F +I + GTGLGL + K +V+A+ G Sbjct: 503 KGAYEFDVADTGIGMKKSEIPRIFERFYRIDKDRSRNSGGTGLGLAIVKHLVEAHEGTIS 562 Query: 794 IFSTPAKGT 802 + S KGT Sbjct: 563 VRSKQGKGT 571 >gi|91776937|ref|YP_546693.1| multi-sensor hybrid histidine kinase [Methylobacillus flagellatus KT] gi|91710924|gb|ABE50852.1| multi-sensor hybrid histidine kinase [Methylobacillus flagellatus KT] Length = 1158 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 133/232 (57%), Gaps = 3/232 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ S +KS+FLA +SHE+RTPL + + ++++ + R G L + +++A I +GN +L Sbjct: 483 ERASQYKSEFLANMSHELRTPLNSSLILAKLLADNREGNLSEEQ-VKFAQTIYSAGNDLL 541 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RI 697 +++ND+LDISK+E+GK+ L + +++ + ++ + A +K++ + P I Sbjct: 542 NLINDILDISKVEAGKLELKPQELAVQHLANSLQAVFEPLAQQKKLDFSIDISPQTPDTI 601 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + ++QI N+LSNAI FT G I + ++ +++++ V+D+G+G+ E Sbjct: 602 YTDRQRLEQILKNLLSNAIKFTDKGS-ISLHISNNAHDQISFTVKDSGIGIDPSMHEAIF 660 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 PF Q+ + R GTGLGL +++ + G + S +G+ ++ P Sbjct: 661 APFRQVDGTSSRRYGGTGLGLSISRNLAALLGGSINVESARGEGSSFTLLVP 712 >gi|95931098|ref|ZP_01313824.1| histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95132843|gb|EAT14516.1| histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 1279 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 131/255 (51%), Gaps = 10/255 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 ++ +Q + L AK+ AE+ + KS FLA +SH+IRTPL ++IGF++++ + Sbjct: 774 EVERRRQAEAALLVAKEAAEQATKAKSVFLAHMSHDIRTPLNSVIGFTDILDT----LIK 829 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +P Y I G +L I+ND+LD+SKIE+G+M LH E V+ + + L Sbjct: 830 DPVQKGYLRSIKIGGKALLGIINDILDLSKIEAGQMVLHRENVNPHQLFRDMEQLFHEQI 889 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-----GQIIISTTHTS 733 K + +P+ +L D ++QI LN++ NAI FT G Q I S Sbjct: 890 RHKNLNFVVDVDEALPQSLLVDAVRLRQILLNLIGNAIKFTEQGYVTLRVQKIFRDAQCS 949 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ + V D+G+G++ + E + F Q + R G+GLGL + + +V G+ + Sbjct: 950 KLDLQIDVEDSGMGISPDDHESIFQMFQQSKGQDERRFGGSGLGLAICQKLVTMMDGEIH 1009 Query: 794 IFSTPAKGTLIEIIF 808 + S +G+ +I Sbjct: 1010 VASELGQGSTFSVIL 1024 >gi|262195026|ref|YP_003266235.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262078373|gb|ACY14342.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 965 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 103/390 (26%), Positives = 192/390 (49%), Gaps = 27/390 (6%) Query: 436 EDVDTRIN-KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS--------KLFG 486 +D+D R ++++E + ++++A+ D + + + EG +L N A + KL G Sbjct: 319 DDIDDRKQLEQQLEDAAFMMQTVIDASPDCVIVKDLEGRVLYVNEAFAREVSVPRAKLVG 378 Query: 487 YPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 D+L R +E+ V R K+ +L L + Sbjct: 379 LSAFDVLPRARAAAQVERERMVVEGGVQVRTEVARPRDARGKVIY------ELFELPMRD 432 Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + S S+ DI++WKQ + LS A + AE K++FLA +SHE+RTPL+ IIG Sbjct: 433 RSGALSGLISIG-RDITDWKQSERALSLAHQQAEAARLAKTEFLANISHEVRTPLSGIIG 491 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 + +++ + +Y ++ SG+ +L+++NDLLDIS++E+G++ L + L Sbjct: 492 MTSLLRTTEL----DAEQADYVATVEASGSTLLNLINDLLDISRLEAGRIALDEQMFELM 547 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724 V+ ++L + A EK + + A +P +L D + Q+ N+++NA+ FT G+ Sbjct: 548 PCVTHTVNLARPMAREKGLALDLDIAEGVPAFVLGDELRLSQVLSNLVTNALKFTEQ-GR 606 Query: 725 IIISTTHTSNEEVILRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 +++ + E+ +R+R DTG+G+ + E + F Q+ S R G GLGL + Sbjct: 607 VLVKVSPCGYEDDRIRLRFAVHDTGIGIPEDKREVLFERFTQVDTSTTRRYGGAGLGLAI 666 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 ++ +V+A G+ + S +G+ L Sbjct: 667 SQHLVNAMGGRIELQSREGEGSCFSFALSL 696 >gi|90580619|ref|ZP_01236424.1| hypothetical sensory box sensor histidine kinase/response regulator [Vibrio angustum S14] gi|90438277|gb|EAS63463.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium angustum S14] Length = 1114 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 130/238 (54%), Gaps = 10/238 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 KQ+ N+L A K+ K +FLA SHE+RTPL ++G +E + GP+ + + Sbjct: 430 KQKNNELQTADKL-------KDEFLATTSHELRTPLHGMVGIAESLLAGANGPVKDSQRR 482 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I+ SG + ++V+DLLD K+ G +++H + L AV + L K + Sbjct: 483 QLEMIIN-SGQRLTNLVDDLLDYHKMRYGDLDIHRHAIDLSAAVRLVLELSSHLLGNKPV 541 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 I N+P + AD + ++Q+ N++ NAI +T S G+IIIS T +++ ++V DT Sbjct: 542 RIINQIPANLPLVDADEQRLEQVLYNLVGNAIKYT-SEGKIIISAT-VLEQQLRVQVVDT 599 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G G+ + +LE +P Q ++ +G GLGL +++ +++ G+ Y+ S P GT Sbjct: 600 GQGIPSEQLEHIFEPLIQANSNSANYRQGAGLGLSISRQLIELMGGRLYVSSQPMIGT 657 >gi|237721041|ref|ZP_04551522.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229449876|gb|EEO55667.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 885 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 130/257 (50%), Gaps = 12/257 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E + K +L +K+ AE S KS FLA +SHEIRTPL AI+GFS +I Sbjct: 486 DITELEMIKRELQSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESDDAEER 545 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 Y N ++ + +L ++N++LD+SKIESG + F P SL E + ++ Sbjct: 546 KT----YYNIVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCRE-VHDAHIFR 600 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + + + ++ I D V Q+ N++ NA+ FT G I ++ +++ Sbjct: 601 TPQGVSLVYESSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS--ISYGYKLADNQIVF 658 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG G+ ++ + + F ++ N Q GTGLGL + K++V+ GK + S Sbjct: 659 HVTDTGTGIEPEKVGRVFERFAKLNNHAQ----GTGLGLSICKSIVERLGGKISVSSEFG 714 Query: 800 KGTLIEIIFPLYDTSHP 816 KGT P Y ++P Sbjct: 715 KGTTFTFTLP-YTIANP 730 >gi|114570424|ref|YP_757104.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10] gi|114340886|gb|ABI66166.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10] Length = 575 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 79/262 (30%), Positives = 131/262 (50%), Gaps = 9/262 (3%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 ++ Q +L + AE+ + KS+FLA VSHEIRTPL ++G + V+ + G L P Sbjct: 181 TQMVQAAIELQRKSEQAEEATRVKSEFLATVSHEIRTPLNGVLGMARVLDD---GSL-RP 236 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + I RSG ++L +ND+LD+S+IE G M + P L ++ L + A E Sbjct: 237 DQSDQVQAITRSGEVLLSTLNDVLDLSRIEEGLMVVETRPFDLPAMINGVAQLYVITAAE 296 Query: 682 KRILIRTSFANNI---PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K + + ++ + + D + QI N+LSNAI FT G ++ + + ++ Sbjct: 297 KSVEFFIEISPDLDLTQKRVGDENRITQILHNLLSNAIKFTAEGRVDLVVSPGETPSDIR 356 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 VRDTG+GM+ E+ + + F Q S + G+GLGL +A + G+ + S P Sbjct: 357 FTVRDTGIGMSEAEVRRVFERFTQADQSTSRKYGGSGLGLCIASQLATLMGGRIDVQSEP 416 Query: 799 AKGTLI--EIIFPLYDTSHPHD 818 G+ + P +D + D Sbjct: 417 GVGSCFTASLKLPAHDGARVQD 438 >gi|73537902|ref|YP_298269.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134] gi|72121239|gb|AAZ63425.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134] Length = 1284 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 77/240 (32%), Positives = 126/240 (52%), Gaps = 12/240 (5%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L+ AK AE + K+ FLA +SHEIRTP+ A+IG + + + + +P+ +Y Sbjct: 517 ELAKAKHEAESAAQAKASFLANMSHEIRTPMNAVIGMAHLALSTQL----DPQQRDYVEK 572 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I RSG +L I+ND+LD+SKIE+GK+ + SL+ + LV A K++ + Sbjct: 573 IQRSGQHLLGILNDILDLSKIEAGKLEIEQIDFSLERLLRTVGDLVSERAAAKQLELVVD 632 Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR------VR 742 ++P L D ++Q+ +N +NA+ FT G+I+I + E R VR Sbjct: 633 VQPDVPDSLRGDPLRIRQVLINFTTNAVKFTER-GEIVIRVARCAGEHAESRVRLHFEVR 691 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ + + + F Q +S R G+GLGL ++ +V G + S KG+ Sbjct: 692 DTGIGIDADAIPRLFRSFEQADSSTTRRYGGSGLGLAISHRLVTLTGGTIGVQSELGKGS 751 >gi|45358866|ref|NP_988423.1| sensory transduction histidine kinase [Methanococcus maripaludis S2] gi|45047732|emb|CAF30859.1| Sensory transduction histidine kinase [Methanococcus maripaludis S2] Length = 639 Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 127/226 (56%), Gaps = 4/226 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+ +A VSHE+RTPLT+I G+ E++ + G + + + + D + + ++ + Sbjct: 413 KSELIAVVSHELRTPLTSIKGYVELVLDGTMGAINDSQK-KCLQVADDNIVRLRRLIESM 471 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+SKIE G++ ++ E V+L V + I ++ A EK I + + I AD + Sbjct: 472 LDLSKIERGELEMYREKVNLRSIVCDVIEYLKPLATEKNIKLNKEVED--IAIEADKDRI 529 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 Q+ N++ NAI F+P+ I++S +E + L+V D G G+ ++EK F Q+ Sbjct: 530 TQVLTNLIENAIKFSPANESILVSGV-LEDEHIHLKVTDRGAGIPKKDMEKIFNRFYQVD 588 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +S + + G+GLGL + K++V+A+ G ++ S KG+ II P+ Sbjct: 589 SSTKRKKGGSGLGLAVCKSIVEAHKGSIWVESELGKGSTFHIILPI 634 >gi|218246196|ref|YP_002371567.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] gi|218166674|gb|ACK65411.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] Length = 1578 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 85/258 (32%), Positives = 144/258 (55%), Gaps = 8/258 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DIS+ K + +L AK+ A + KS FLA +SHE+RTPL AI+GF++++ R Sbjct: 1097 THKDISQRKHIELELQKAKETAIAANLSKSIFLANMSHELRTPLNAILGFTQLLG--RDT 1154 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L + + E I+RSG +L +++D+LD+SKIE+G++ L L + ++ Sbjct: 1155 SL-SAYHQERLQIINRSGEHLLGLIDDILDLSKIETGQIALFLTDCDLSGLLLTVEEMLS 1213 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSN 734 A K I + +N+PR I D + ++QI +N+L+NAI FT G + ++ + Sbjct: 1214 PKAESKGIKLIIEKDDNLPRYIKIDSKKLRQILINLLNNAIKFTHQGTVTLRVNLSKIDQ 1273 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + VI++ V DTGVG+ EL+ + F Q ++I +G+GLGL +++ +V GK Sbjct: 1274 KAVIVKFIVEDTGVGIAADELDNLFQLFVQAEAGKKI-NQGSGLGLAISQKLVQLMGGKI 1332 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S +G++ P+ Sbjct: 1333 EVNSILNQGSIFSFEIPV 1350 >gi|94313527|ref|YP_586736.1| histidine protein kinase [Cupriavidus metallidurans CH34] gi|93357379|gb|ABF11467.1| histidine protein kinase [Cupriavidus metallidurans CH34] Length = 1309 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 120/231 (51%), Gaps = 10/231 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K FLA +SHEIRTP+ ++G +E++ + P + S + +L I++D+ Sbjct: 798 KDSFLAMMSHEIRTPMNGVLGLAELLSHTSL----TPEQSATVGMMGDSASALLQILDDI 853 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRS 703 LD SKIE+G++++ P+ + E I ++ A+EK + +R ++ + L D Sbjct: 854 LDYSKIEAGRIDIESRPLDIRELCDCTIGVLATRAHEKGLHLRLHVGADVAAVVLGDSVR 913 Query: 704 VKQIALNILSNAIHFTPSG----GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759 ++Q+ N+LSNAI FT SG ++ T T+ + + RV DTG+G+ + P Sbjct: 914 LRQVLFNLLSNAIKFTESGMVSVSAEVVQETETA-QTLRWRVTDTGIGIEPQNQSRLFDP 972 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F Q S R GTGLGL + + +V G+ + S P GT +E+ L Sbjct: 973 FVQADTSTTRRFGGTGLGLAICRRLVQLMGGRITLKSEPGIGTQVEVELSL 1023 >gi|83816058|ref|YP_446610.1| two component system histidine kinase [Salinibacter ruber DSM 13855] gi|83757452|gb|ABC45565.1| Two component system histidine kinase [Salinibacter ruber DSM 13855] Length = 755 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 81/264 (30%), Positives = 130/264 (49%), Gaps = 14/264 (5%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAE-------KESSHKSDFLARVSHEIRTPLTAIIGFSE 608 +T DI+E K++ +L AK+ AE + S KS LA +SHEIRTPLT IIGF+E Sbjct: 476 VTARDITERKRKARRLKQAKEQAELSKLEAEEASRMKSAMLANMSHEIRTPLTGIIGFAE 535 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 I ++ G G +A+ I+ SG +LD ++ +L++SK+E+G+M L P+ L Sbjct: 536 AIGDEIDGDGG---VAHFADLIEDSGRRLLDTLDAVLNLSKLEAGQMTLESRPIDLAGQA 592 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 + A++ + + AD ++ + N+LSNAI +T G + Sbjct: 593 RQVAREFAAEADDSGLALEVEAEE--AGAWADEGGLQIVLQNLLSNAIKYTEEG--TVQV 648 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 T+ + E +L++ DTG+GM E +PF Q EGTG+GL + K + Sbjct: 649 RTYREDGEAVLQIEDTGIGMDPAVAESLFEPFRQGSEGLSREYEGTGIGLAVTKKATEQM 708 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYD 812 G + + +G+ P D Sbjct: 709 GGSIDVETEKGQGSTFTARLPAAD 732 >gi|78356567|ref|YP_388016.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218972|gb|ABB38321.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 544 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 86/253 (33%), Positives = 132/253 (52%), Gaps = 9/253 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E +L+ AK+ AE S KS FLA +SHE+RTPL IIG ++++ G G+ R Sbjct: 146 EVAARTRELAMAKEEAELASRAKSQFLANMSHELRTPLNGIIGLTDLLLCAPAG--GDHR 203 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 EY + ++G +L IVN+LLD+S IE+ ++ L P SL E+V E ++++ A K Sbjct: 204 --EYLEMVKQAGQELLTIVNNLLDMSSIEACRLVLRETPFSLRESVGEVKRILEIQARWK 261 Query: 683 RILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQI--IISTTHTSNEEVIL 739 + F + IP + + D +KQI N+L NAI +T GG + S T+ + V L Sbjct: 262 NLDFAVFFDDGIPDLFVGDAGRLKQILSNLLVNAIKYTDKGGVSLRVSSAPCTAGDTVRL 321 Query: 740 --RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V+DTGVG+ + E +PF + + G GLGL +++ + G + Sbjct: 322 CFYVQDTGVGIDPEKRETIFEPFVLGESFMTKKSGGAGLGLAISRELARKMGGDVHASRC 381 Query: 798 PAKGTLIEIIFPL 810 G+L E I L Sbjct: 382 AEGGSLFECIVEL 394 >gi|329849065|ref|ZP_08264093.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Asticcacaulis biprosthecum C19] gi|328844128|gb|EGF93697.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Asticcacaulis biprosthecum C19] Length = 595 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 128/232 (55%), Gaps = 11/232 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHE+RTPL AI+G+++++K+ + + + I SG +L ++ D+ Sbjct: 276 KSQFLANMSHELRTPLNAILGYAQLLKSSDL----SSQQLSAVKTIQHSGEHLLTVITDI 331 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703 LDI+K+E+G+M L + +V++ A +K + S A ++P+ ++AD + Sbjct: 332 LDIAKVEAGRMELMPGGFDIRACALTVGQMVRVRAEDKGLSFSISIAEDVPQYVVADEKR 391 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPF 760 ++Q+ +N+L NAI FT +G + T ++ EE + V DTGVG+ +L+ +PF Sbjct: 392 MRQVLINLLGNAIKFTAAGEVRLSVTVVSAGEESARLCFAVSDTGVGIQADQLDSIFRPF 451 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPL 810 Q NS G GTGLGL + +V G + S +G+ +E FPL Sbjct: 452 EQAGNSISKSG-GTGLGLSITHQIVKLMGGDIKVESEVGQGSCFTVEAEFPL 502 >gi|256829363|ref|YP_003158091.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578539|gb|ACU89675.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 788 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 91/345 (26%), Positives = 159/345 (46%), Gaps = 15/345 (4%) Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 ++ NR G E ++ P LEQ P + T S+D TL Sbjct: 303 VVAHWNRTARTWVGLEPEQVIGLP----LEQALPQLAWLVDTVRRSMDEATTLSLTRQSY 358 Query: 533 TKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 + E+ ++ I++ L Y + + D++ + + L AKK AE + KS+FLA Sbjct: 359 EQAEERRTVDILVSPLISDEVYGAVIRLDDVTAQIRMEEGLIAAKKSAESANEAKSEFLA 418 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SHE+RTP + I+G +++ + Y ++ + ++ DLLDIS+I Sbjct: 419 NMSHELRTPFSGIMGMMRLLQGTGL----DDEQRRYVCLAIKASDRFTRLLTDLLDISRI 474 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIAL 709 E+GK+++H + S + + + L + EK I + ++P R++ D V+QI Sbjct: 475 EAGKLDIHEQEFSTSDLHDSVMEIFALASQEKGISLEFFIDPSVPARLVGDEMRVRQILF 534 Query: 710 NILSNAIHFTPSGGQ----IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 N++ NAI FT G I++S ++ V+ V DTG+G+ L F Q+ Sbjct: 535 NLVGNAIKFTEKGCVCVEIILLSPVKGADLRVLFTVSDTGIGIPVDMLSGIFGSFVQVDG 594 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + +G GLGL + K +V G+ + S +GT + + P Sbjct: 595 ASSRAFQGAGLGLAIVKRLVKLMGGQIFADSIEGEGTNMHVELPF 639 >gi|167583130|ref|ZP_02376004.1| putative two-component regulatory system, sensor kinase protein [Burkholderia thailandensis TXDOH] Length = 1108 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 83/271 (30%), Positives = 135/271 (49%), Gaps = 7/271 (2%) Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 +L + + D++E + + L AK E + K +F A +SHEIRTPL++++G Sbjct: 458 RLSHEEVFFCAIADMTEHHRAEQVLREAKLTTEAAAKAKVNFFASMSHEIRTPLSSLVGN 517 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 E++ GPL P E + S +L +VND+LD SKI+ G+++L E S+ E Sbjct: 518 IELVA---LGPLA-PEQRERVRAMQVSAEGLLQVVNDVLDFSKIDIGELSLSEEWRSMTE 573 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI 725 +S + L A + + + +F IP R+ D V QI N+LSNA FT SG Sbjct: 574 LLSRLAASYALLATRQGLKLYLNFDRTIPTRLHFDPVRVSQIINNLLSNAFKFTQSGKIT 633 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + + N E+ V D+G+G+ + ++ +PF Q +++ + GTGLGL + + Sbjct: 634 LRARWTEPNLEI--SVIDSGIGIPDALRDRLFQPFTQGDSNRLAQARGTGLGLSICARLC 691 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + G + S GT I + PL P Sbjct: 692 ELMNGHIALDSAVGVGTHITVTLPLRSADSP 722 >gi|153806065|ref|ZP_01958733.1| hypothetical protein BACCAC_00316 [Bacteroides caccae ATCC 43185] gi|149130742|gb|EDM21948.1| hypothetical protein BACCAC_00316 [Bacteroides caccae ATCC 43185] Length = 391 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 83/266 (31%), Positives = 131/266 (49%), Gaps = 16/266 (6%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT+HDI+ KQ + +L AK+ AE KS FLA +SHEIRTPL AI GF+EV+ + Sbjct: 138 LTVHDITHLKQVERELKVAKEKAENADIAKSAFLANMSHEIRTPLNAITGFAEVMGSAN- 196 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 +Y I + +L++ +VND+LD+SKIE+G + + V ++ +S+ L Sbjct: 197 ---TEEEKTQYQEIIKMNADLLMQLVNDILDMSKIEAGTLEFVYSTVDINLLLSDLQRLF 253 Query: 676 QLYANEK----RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 Q+ N+ +I+ S ++ + I D V Q+ N + NAI FT G I Sbjct: 254 QMRINDAGGKVQIIAEPSLSSCL--IQTDRNRVAQVISNFVGNAIKFTREGN--IRIGYE 309 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + E+ V+DTG G+ +L F ++ Q+ G GLGL +++ +V G+ Sbjct: 310 AKDTELYFYVKDTGTGIPAEKLSNVFGRFVKLNKDQK----GAGLGLSISQTIVGKLSGQ 365 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHPH 817 S +G+ P P Sbjct: 366 IGADSIEGEGSTFWFTLPYLSCGKPQ 391 >gi|167031168|ref|YP_001666399.1| multi-sensor signal transduction histidine kinase [Pseudomonas putida GB-1] gi|166857656|gb|ABY96063.1| multi-sensor signal transduction histidine kinase [Pseudomonas putida GB-1] Length = 588 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 98/368 (26%), Positives = 173/368 (47%), Gaps = 41/368 (11%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-------VEDILRKPFTVFLEQNT 505 +L ++L++ DG+ II+R+G + N + G+ + + L++P LEQ Sbjct: 252 RLQAVLDSIDDGLLIIDRQGRLEHLNPVAQRQLGWSDSRVGSGLANALQRPE---LEQQL 308 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISE 563 V+ SLD RQ + + + +E +LL+ + P M HD++E Sbjct: 309 RQVLRGG-----SLD-RQP-DDLNIEVDEETRLLTYSLTPVSHPQGPILGAVMVLHDVTE 361 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI-IGFSEVIKNQRFGPLGNPR 622 + + +S+F+ R SHE+RTP+T + + F + + +F P + R Sbjct: 362 QRAFERV--------------RSEFVLRASHELRTPVTGMHMAFGLLRERVKFPP--DAR 405 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + I + ++NDLL+ S+ +SG L P +LDE + A A +K Sbjct: 406 ENDLLETIGEEMQRLTQLINDLLNFSRYQSGLQKLELAPCALDELLERAQLRFAEQAQQK 465 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 +I + +PRI AD+ + ++ N+L NAI T +GG+I + + E VI+ + Sbjct: 466 QIELLKELEAPLPRIQADVAQLDRVLDNLLHNAIRHTANGGRIRLHARRHA-ERVIISIE 524 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D G G+ + + +PF Q+ + G GLGL L K +V + G+ +FS P +GT Sbjct: 525 DNGEGIAYGQQGRIFEPFVQVGRKK----GGAGLGLALCKEIVQLHGGRMGVFSRPGQGT 580 Query: 803 LIEIIFPL 810 + P+ Sbjct: 581 QFYMALPV 588 >gi|75907309|ref|YP_321605.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75701034|gb|ABA20710.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1431 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 121/230 (52%), Gaps = 5/230 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +FLA +SHE+R+PL I+G+S +++N G L + + N I+R+ L ++++ DL Sbjct: 1063 KDEFLAVLSHELRSPLNPILGWSRLLQN---GKLDEAKAKQAVNIIERNAKLQVELIEDL 1119 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LDIS+I GK++L P++L + AI V+L A I I + I + D + Sbjct: 1120 LDISRILQGKLSLTSSPINLASVIKGAIETVRLAAEANSIRIEVNLDGEIGLVSGDSTRL 1179 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +Q+ N+LSNA+ FTP+GG + I N+ I V DTG G++ + F Q Sbjct: 1180 QQVMWNLLSNAVKFTPTGGLVEIRLEQVGNQAQI-SVSDTGKGISPDFIPYVFDYFRQAD 1238 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDT 813 ++ + G GLGL + + +V+ + G + S G + PL T Sbjct: 1239 SATTRKFGGLGLGLAIVRHLVELHGGTIHAESQGEGMGATFTLKLPLLPT 1288 Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 76/262 (29%), Positives = 135/262 (51%), Gaps = 13/262 (4%) Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG-FSEV 609 S+ + ++ + +++E+ + A+K+AE + + K+ F + VSHE RTPLT ++ E+ Sbjct: 301 SAQIAASIGNAQAYEEERKR---AEKLAELDRA-KTTFFSNVSHEFRTPLTLMLSPLEEL 356 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + + I R+G +L +VN LLD S+IE+G++ +EP L + Sbjct: 357 LTADDL----SQEQRQEMTLIHRNGLRLLKLVNTLLDFSRIEAGRVQAVYEPTDLSTFTA 412 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 E S+ + A E+ L + +P ++ D + ++I LN+LSNA FT SG I Sbjct: 413 ELASIFR-SAIEQAGLQFSVTCEPLPELVYVDRQMWEKIILNLLSNAFKFTFSGA--IAL 469 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 T +V + V DTG+G+ EL + F ++ ++ EG+G+GL L + +V + Sbjct: 470 TLRQVQHQVEITVTDTGIGIPQAELPHLFERFHRVEGARGRTQEGSGIGLALVQELVRLH 529 Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810 G+ + S GT I P+ Sbjct: 530 GGQVQVDSLEGLGTTFTITVPM 551 >gi|302670412|ref|YP_003830372.1| two component system histidine kinase/response regulator hybrid protein [Butyrivibrio proteoclasticus B316] gi|302394885|gb|ADL33790.1| two component system histidine kinase/response regulator hybrid protein [Butyrivibrio proteoclasticus B316] Length = 1269 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 127/236 (53%), Gaps = 8/236 (3%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A + KS+FLA +SHEIRTP+ A++G +EVI + + + +EYA I+ +G + Sbjct: 649 ARAANEAKSNFLANMSHEIRTPINAVLGMNEVILRE----CKDEKILEYAQNIEGAGRTL 704 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ND+LD SKIE+G M + +++ ++V + A +K + ++ ++P Sbjct: 705 LSLINDILDFSKIEAGSMEITEAEYDFSSVLNDVYNMVHIKAEQKILDLKFDIDEDLPDT 764 Query: 698 L-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTGVGMTNYEL 753 + D ++QI +N+L+NA+ +T GG + +T + I +++ DTG G+ EL Sbjct: 765 MYGDEMRLRQIIVNVLNNAVKYTEEGGVTLEATGIRDYGDTITLKIKITDTGKGIKKEEL 824 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F ++ + EG+GLGL + ++++ G + S KG+ I+ P Sbjct: 825 PTLFDKFKRLDAEKNRTIEGSGLGLAITHSLLELMGGSIMVDSVYGKGSTFTIVLP 880 >gi|78063726|ref|YP_373634.1| multi-sensor hybrid histidine kinase [Burkholderia sp. 383] gi|77971611|gb|ABB12990.1| multi-sensor hybrid histidine kinase [Burkholderia sp. 383] Length = 1003 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 86/268 (32%), Positives = 130/268 (48%), Gaps = 10/268 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ D++ K ++KL A+ A+ + KS FLA +SHEIRTPL AIIG E++ Sbjct: 493 TLTDVTARKLTEDKLREARVAADDANKAKSTFLATMSHEIRTPLNAIIGNLELMGRAELP 552 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P R I S + +L+I+ND+LD+SK ES +M L P L + + S+ + Sbjct: 553 PTEQRRL----KTIVSSSDALLNIINDVLDLSKAESNQMALEHIPFDLRRVLQDVASIFR 608 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A+ K + + A + + D ++Q+ N++ NAI FT GG I + + Sbjct: 609 PLADAKGLSLECHVAAELADGYVGDPTRLRQLVSNLVGNAIKFTEHGGITIDARLARGDA 668 Query: 736 E---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 V + VRDTGVG+ L + Q S R GTGLGLPL + + G+ Sbjct: 669 RAGCVEIAVRDTGVGIPGEALPTLFDVYMQADASIYRRFGGTGLGLPLCRRIARLMDGEL 728 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 + S +G+ PL D P C+ Sbjct: 729 TVESRLGEGSTFVATLPLTDA--PAGCL 754 >gi|186682604|ref|YP_001865800.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465056|gb|ACC80857.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 709 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 128/241 (53%), Gaps = 5/241 (2%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A++ AE + K +FLA +SHE+RTPL I+G+ ++++ + +E I+R+ Sbjct: 334 AREAAETANRIKDEFLAVLSHELRTPLNPILGWIKLLRTHQLSEEKKAIALET---IERN 390 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 L ++ DLLD+S+I GK+ L+ V L ++ A V L A K I I T A + Sbjct: 391 AKLQTQLIADLLDVSRILQGKLTLNISSVDLAATIAAANETVALAAEAKSIQIHTEIAPD 450 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 + + D ++Q+ N+L+NA+ FTP+GG++ I ++N ++V DTG G+T L Sbjct: 451 VQLFMGDASRLQQVVWNLLTNAVKFTPTGGEVKIK-LESTNTYTQIQVSDTGKGITPEFL 509 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA-KGTLIEIIFPLYD 812 + F Q ++ + G GLGL + + +V+ + G + S +G + + PL Sbjct: 510 PYVFETFRQADSATTRKFGGLGLGLAIVRHIVEMHGGTVHADSKGEDQGAIFTVRLPLIT 569 Query: 813 T 813 T Sbjct: 570 T 570 >gi|332702581|ref|ZP_08422669.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552730|gb|EGJ49774.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 500 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 133/241 (55%), Gaps = 17/241 (7%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A+ AE + KSDFLA +SHE+RTP+ IIG E+ + P + R NY+ Sbjct: 109 LLRARAQAEAANKAKSDFLANMSHELRTPMNGIIGSIELALMKE--PSTSVR-----NYL 161 Query: 631 D---RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 D +S +LDIVND+LD+SKIE+GK L P LD+ V++ + ++ A K + +R Sbjct: 162 DMGRKSALNLLDIVNDILDLSKIEAGKFELQRIPFDLDQCVTDIVEALEGIAERKGVDLR 221 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST---THTSNEEVILR--V 741 + +P R++ D +KQ+ N++ NAI FT G+I+++ S+ V +R V Sbjct: 222 QGIDSEVPRRLVGDAVRLKQVLTNLIGNAIKFTDQ-GRILVNVEDAGQGSDGRVRIRFSV 280 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RDTG+G+ ++ F Q + GTGLGL ++K +V+ G+ + S+ +G Sbjct: 281 RDTGIGIAPDRIKHVFDSFYQANIENLAKYGGTGLGLAISKRLVEMMDGEIGVESSLGEG 340 Query: 802 T 802 + Sbjct: 341 S 341 >gi|237710952|ref|ZP_04541433.1| two-component system sensor histidine kinase [Bacteroides sp. 9_1_42FAA] gi|229454796|gb|EEO60517.1| two-component system sensor histidine kinase [Bacteroides sp. 9_1_42FAA] Length = 634 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 78/238 (32%), Positives = 131/238 (55%), Gaps = 10/238 (4%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK+ AE+ + K+ FLA +SHEIRTPL AI+GFS V+ + P +Y + I ++ Sbjct: 400 AKEKAEESNRLKTAFLANMSHEIRTPLNAIVGFSSVLVSDDSSP---AEKAQYCDIIQKN 456 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRTSFAN 692 +L+L ++ND+LDIS++ESGK+ +E + E A+S + + L T A+ Sbjct: 457 SDLLLHLINDILDISRMESGKIKFVWEECDVVELCQTALSTAEYGRKTSALFLFETPVAS 516 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 + I D + +KQ+ +N+LSNA FTPSG + ++++ L V DTG G+ + + Sbjct: 517 LV--IKTDAQRLKQVLINLLSNAAKFTPSGSIKLAIAIDKQHQQLELSVSDTGCGIPSDK 574 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 ++ + F ++ Q GTGLGL +++ +V+ GK ++ +G PL Sbjct: 575 SDRVFERFEKLNEYSQ----GTGLGLAISRLIVENLGGKIWVDKDYTEGARFVFTHPL 628 >gi|229141313|ref|ZP_04269851.1| hypothetical protein bcere0013_44060 [Bacillus cereus BDRD-ST26] gi|228642094|gb|EEK98387.1| hypothetical protein bcere0013_44060 [Bacillus cereus BDRD-ST26] Length = 558 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 96/376 (25%), Positives = 181/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ L + + + + P Sbjct: 211 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEEYLDRLY--YESFHHPE 268 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 ++ + +E+I + K K + L + I++ F Sbjct: 269 II-------------ELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 315 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 316 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 359 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + + + Sbjct: 360 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHM 418 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+GG + + Sbjct: 419 VLDNKAGEKEISLQVNALKRVS-VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELVEDK 477 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 478 YNAYI-KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 536 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 537 VDSEIGEGTTFTVVLP 552 >gi|238761954|ref|ZP_04622927.1| Sensor kinase protein rcsC [Yersinia kristensenii ATCC 33638] gi|238699682|gb|EEP92426.1| Sensor kinase protein rcsC [Yersinia kristensenii ATCC 33638] Length = 932 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 132/256 (51%), Gaps = 7/256 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 421 VLVDVSSRVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 479 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 480 PHGVERLVTAMN---NSSGLLLKIISDILDFSKIESEQLKIEPIEFSTVEVITHITANYL 536 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +KR+ + N+PR++ D ++Q+ N+L+NAI FT +G II Sbjct: 537 PLVVKKRLGLYCFIEPNVPRMMVGDAVRLQQVISNLLNNAIKFTDTG--CIILQVRVRGY 594 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + RVRDTGVG+ + E+ + PF Q+ Q +GTGLGL + + +++ G + Sbjct: 595 YLEFRVRDTGVGINSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLINLMDGDVEVV 654 Query: 796 STPAKGTLIEIIFPLY 811 S G++ I PLY Sbjct: 655 SELGMGSIFAIRIPLY 670 >gi|225412406|ref|ZP_03761595.1| hypothetical protein CLOSTASPAR_05629 [Clostridium asparagiforme DSM 15981] gi|225042069|gb|EEG52315.1| hypothetical protein CLOSTASPAR_05629 [Clostridium asparagiforme DSM 15981] Length = 604 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 128/253 (50%), Gaps = 16/253 (6%) Query: 563 EWKQEKNKLSH----------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 EW E KL K A+ S K+DFL+R+SHEIRTP+ AI G + + K+ Sbjct: 196 EWTMEHRKLLKELVKIIPSFIMKSKADAVSRAKTDFLSRMSHEIRTPMNAISGMTTIAKS 255 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 P+ + ++ I+ S +L++VND+LD+S+IESGK+ L + + L + ++ Sbjct: 256 VVKDPV---KTLDCLEKIESSNVYLLNLVNDILDMSRIESGKLELCYGTLDLTQLLASLE 312 Query: 673 SLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 SL A EK + + + R+L AD + Q+ +N++ NA+ FT GG + Sbjct: 313 SLFHAQALEKGLTMCLKDGRSRNRLLRADSLRLNQVLVNMIGNAVKFTDHGGITVRVEEL 372 Query: 732 TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 +N +LR V DTG+G+ L PF Q S R GTGLGL ++ +V Sbjct: 373 EANPRAVLRFSVADTGIGIEPSSLPNIFNPFEQAEASTASRRGGTGLGLSISYRLVQMMG 432 Query: 790 GKFYIFSTPAKGT 802 G + S +G+ Sbjct: 433 GVLEVTSQVGRGS 445 >gi|153839227|ref|ZP_01991894.1| para-aminobenzoate synthase [Vibrio parahaemolyticus AQ3810] gi|149747255|gb|EDM58243.1| para-aminobenzoate synthase [Vibrio parahaemolyticus AQ3810] Length = 566 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 7/237 (2%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 +K AE+ +F+A ++HE+RTPL ++G +E++ + G + R +Y + +SG Sbjct: 195 RKRAEESEKATKEFVAMINHELRTPLNGVLGSAELLSKTQLGE--DQR--QYLGNLIQSG 250 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L+ I+NDLLD SK+ +G M + + + D+ + A EKRI I Sbjct: 251 DLLRVIINDLLDFSKMNAGMMEIIDKVFAWDDLEKAITGVFAAKAAEKRIHFSIDKKLGI 310 Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 P L DL + QI +N++ NAI FT GG ++ N V DTG+G+ Sbjct: 311 PEFLIGDLERITQILVNLIGNAIKFTHLGG--VVLRVEWVNGTAFFEVEDTGIGIPLAAQ 368 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 PF Q+ S + EG+GLGL + K +VD G+ S KGT ++ PL Sbjct: 369 SSLFDPFVQVDRSAKRSFEGSGLGLAICKNLVDLMQGEISFESEERKGTTFKVSIPL 425 >gi|91223629|ref|ZP_01258894.1| signal transduction histidine kinase [Vibrio alginolyticus 12G01] gi|91191715|gb|EAS77979.1| signal transduction histidine kinase [Vibrio alginolyticus 12G01] Length = 584 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 82/263 (31%), Positives = 133/263 (50%), Gaps = 8/263 (3%) Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 I+ L FS H I+E K+ K L A K AE+ + KS FLA +SHEIRTP+ Sbjct: 172 ILTTALTFSVIVLYLSHYITELKKTKLALQAAVKKAEESNHAKSMFLATMSHEIRTPMNG 231 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 +IG ++++ + +P+ E+ + SG ++ I+N++LD SK+E GK++L E Sbjct: 232 VIGMTQLLISDN----KDPKIREHLTTLLESGEHLMVIINEILDFSKLEQGKLDLSEEEF 287 Query: 663 SLDEAVSEAISLVQLYANEKRILI---RTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 +++ + ++ + AN+K I + ANN+ + D+ ++QI N++ NAI FT Sbjct: 288 DINQLLIPIMNAFKPQANDKSIQLVFDTKELANNLV-LKGDIVRIRQIVFNLVGNAIKFT 346 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 G + E++ +V DTG+G+ LE PF Q GTGLGL Sbjct: 347 SDGMVKAVLKYDIKTEKLSFQVSDTGIGIPTARLESIFNPFEQAEIRTMHDFGGTGLGLS 406 Query: 780 LAKAMVDANMGKFYIFSTPAKGT 802 + K + A G + S G+ Sbjct: 407 IVKKLCLAMGGNVTVTSELGIGS 429 >gi|156976578|ref|YP_001447484.1| histidine kinase [Vibrio harveyi ATCC BAA-1116] gi|1708886|sp|P54302|LUXQ_VIBHA RecName: Full=Autoinducer 2 sensor kinase/phosphatase luxQ gi|459205|gb|AAA20838.1| LuxQ [Vibrio harveyi] gi|156528172|gb|ABU73257.1| hypothetical protein VIBHAR_05352 [Vibrio harveyi ATCC BAA-1116] Length = 859 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 137/263 (52%), Gaps = 17/263 (6%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ + + + + A++ AEK + ++DFLA++SHEIRTP+ I+G ++++K+ Sbjct: 457 QDITTLIEAEKQSNIARREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKD------ 510 Query: 619 GNPRYIEYANYID---RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + E N ID SG +L ++ND+LD SKIE GK N+ P S + + ++ Sbjct: 511 -SVDTQEQKNQIDVLCHSGEHLLAVLNDILDFSKIEQGKFNIQKHPFSFTDTMRTLENIY 569 Query: 676 QLYANEK--RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-- 731 + K ++I N+ I D + QI N++SNA+ FTP G + + Sbjct: 570 RPICTNKGVELVIENELDPNV-EIFTDQVRLNQILFNLVSNAVKFTPIGSIRLHAELEQF 628 Query: 732 --TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 N +++ + DTG+G+ + +L++ +PF Q ++ G+GLGL + K +VD Sbjct: 629 YGAENSVLVVELTDTGIGIESDKLDQMFEPFVQEESTTTREYGGSGLGLTIVKNLVDMLE 688 Query: 790 GKFYIFSTPAKGTLIEIIFPLYD 812 G + S+ GT I P+ D Sbjct: 689 GDVQVRSSKGGGTTFVITLPVKD 711 >gi|327355100|gb|EGE83957.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis ATCC 18188] Length = 2401 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 123/238 (51%), Gaps = 10/238 (4%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H K+ E + KS FLA VSH++RTP+ +IG SE++K + Y I Sbjct: 1882 HNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLSELLKKTSL----DREQDGYVESIRV 1937 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 + +L ++ND+LD SK+E+GKM + P++L E ++E + ++ + + Sbjct: 1938 CADTLLTLINDILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDCGLKTIEDLDG 1997 Query: 693 NIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVG 747 P +L D + QI +N+LSN+ FTP G + + +E + +V DTG+G Sbjct: 1998 VDPNLLVMGDPVRLHQIFMNLLSNSYKFTPKGSVTVKAKVTDEDEGRIRITCKVADTGIG 2057 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLI 804 ++ +L + +PF Q +S G+GLGL + KA++ D GK ++ S GT + Sbjct: 2058 ISGEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEEGVGTTV 2115 >gi|224368990|ref|YP_002603154.1| two-component hybrid sensor and response regulator histidine kinase [Desulfobacterium autotrophicum HRM2] gi|223691707|gb|ACN14990.1| two-component hybrid sensor and response regulator histidine kinase [Desulfobacterium autotrophicum HRM2] Length = 701 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 134/250 (53%), Gaps = 13/250 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + + + +LS A + ++ S K DFLAR+SHEIRTPL++I+G+++++ F Sbjct: 156 VLDLGRTNRELSVAMEGLKESSRAKGDFLARMSHEIRTPLSSIMGYTDIL----FDTCLA 211 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS--EAISLVQLY 678 P +Y I +S +++L IVND+LD S++ESG++ L +P+ D V E + +V+ Sbjct: 212 PEQTDYVTNIKKSCDVLLGIVNDVLDFSRVESGEIGL--DPIEFDPEVLCFECLEMVRTQ 269 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE 736 + R+ + + +P + AD +Q+ LN+L NA FT +G ++ + + Sbjct: 270 VDTSRVELLCRICDCVPGCVRADPNRFRQVLLNLLGNAAKFTVNGVIELSLKVKEKTKTG 329 Query: 737 VIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG-EGTGLGLPLAKAMVDANMGKFY 793 ++L VRDTG G+ L KPF Q+ + +G G GLGL + + + G Sbjct: 330 IVLCASVRDTGSGIPTAALGVIFKPFQQVVRGRIAKGLRGMGLGLSICRKIARRMGGNIT 389 Query: 794 IFSTPAKGTL 803 + S +G++ Sbjct: 390 VESREGEGSV 399 >gi|254458661|ref|ZP_05072085.1| Nitrate and nitrite sensing family [Campylobacterales bacterium GD 1] gi|207084427|gb|EDZ61715.1| Nitrate and nitrite sensing family [Campylobacterales bacterium GD 1] Length = 1088 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 132/237 (55%), Gaps = 16/237 (6%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K+ A++ S KS FLA +SHEIRTPL I+GF+E++K+ LG ++ E+ I++S Sbjct: 395 KESAQEASEAKSMFLANMSHEIRTPLNGIVGFTELLKDT---GLGEEQH-EFVEIIEKSS 450 Query: 635 NLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 +L+I+N++LD+SKIES K+ + F P+ DE S A+ + + A+EK I + Sbjct: 451 ENLLEIINNILDLSKIESNKLEIEDIVFNPI--DEFES-AVEVYAVRASEKHIDLGCFID 507 Query: 692 NNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTG 745 + L D +K+I +N+LSNA+ FT S G I + ++ V V+D+G Sbjct: 508 PTLEHPLKGDPTKIKEIIINLLSNAVKFTSSAGSINVDIRRVECDQDGKTRVRFEVQDSG 567 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+T+ + + + F Q S + GTGLGL ++ V+ G+ + S GT Sbjct: 568 IGVTSEQKSRIFEAFSQADTSITRKYGGTGLGLTISSRFVELMGGELDLHSETGSGT 624 >gi|89072496|ref|ZP_01159068.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium sp. SKA34] gi|89051600|gb|EAR57053.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium sp. SKA34] Length = 1132 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 130/238 (54%), Gaps = 10/238 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 KQ+ N+L A K+ K +FLA SHE+RTPL ++G +E + GP+ + + Sbjct: 444 KQKNNELQTADKL-------KDEFLATTSHELRTPLHGMVGIAESLLAGANGPVKDSQRR 496 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I+ SG + ++V+DLLD K+ G +++H + L AV + L K + Sbjct: 497 QLEMIIN-SGQRLTNLVDDLLDYHKMRYGDLDIHRHAIDLSAAVRLVLELSSHLLGNKPV 555 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 I N+P + AD + ++Q+ N++ NAI +T S G+IIIS T +++ ++V DT Sbjct: 556 RIINQIPANLPLVDADEQRLEQVLYNLVGNAIKYT-SEGKIIISAT-VLEQQLRVQVVDT 613 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G G+ + +LE +P Q ++ +G GLGL +++ +++ G+ Y+ S P GT Sbjct: 614 GQGIPSEQLEHIFEPLIQANSNSANYRQGAGLGLSISRQLIELMGGRLYVSSQPMIGT 671 >gi|328474775|gb|EGF45580.1| hypothetical protein VP10329_18770 [Vibrio parahaemolyticus 10329] Length = 566 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 7/237 (2%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 +K AE+ +F+A ++HE+RTPL ++G +E++ + G + R +Y + +SG Sbjct: 195 RKRAEESEKATKEFVAMINHELRTPLNGVLGSAELLSKTQLGE--DQR--QYLGNLIQSG 250 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L+ I+NDLLD SK+ +G M + + + D+ + A EKRI I Sbjct: 251 DLLRVIINDLLDFSKMNAGMMEIIDKVFAWDDLEKAITGVFAAKAAEKRIHFSIDKKLGI 310 Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 P L DL + QI +N++ NAI FT GG ++ N V DTG+G+ Sbjct: 311 PEFLIGDLERITQILVNLIGNAIKFTHLGG--VVLRVEWVNGTAFFEVEDTGIGIPLAAQ 368 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 PF Q+ S + EG+GLGL + K +VD G+ S KGT ++ PL Sbjct: 369 SSLFDPFVQVDRSAKRSFEGSGLGLAICKNLVDLMQGEISFESEERKGTTFKVSIPL 425 >gi|238788612|ref|ZP_04632404.1| Sensor kinase protein rcsC [Yersinia frederiksenii ATCC 33641] gi|238723207|gb|EEQ14855.1| Sensor kinase protein rcsC [Yersinia frederiksenii ATCC 33641] Length = 949 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 131/256 (51%), Gaps = 7/256 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 444 VLVDVSSRVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 502 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 503 PQGVDRLVTAMN---NSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYL 559 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +KR+ + ++PR++ D ++Q+ N+L+NAI FT +G II Sbjct: 560 PLVVKKRLGLYCFIEPDVPRLMQGDAVRLQQVISNLLNNAIKFTDTG--CIILQVRVRGY 617 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + RVRDTGVG+ E+ + PF Q+ Q +GTGLGL + + +V+ G + Sbjct: 618 YLEFRVRDTGVGINAREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVV 677 Query: 796 STPAKGTLIEIIFPLY 811 S G++ I PLY Sbjct: 678 SELGMGSIFAIRIPLY 693 >gi|77460432|ref|YP_349939.1| periplasmic sensor hybrid histidine kinase [Pseudomonas fluorescens Pf0-1] gi|77384435|gb|ABA75948.1| putative two-component sensor kinase and response regulator [Pseudomonas fluorescens Pf0-1] Length = 633 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 79/265 (29%), Positives = 134/265 (50%), Gaps = 19/265 (7%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E Q +L ++ AEK ++ KSDFLA +SHE+RTP+ ++G ++++ Sbjct: 242 EQHQAMAQLIQTREEAEKANNAKSDFLAMMSHELRTPMNGVLGMLQLLETTDM----TEE 297 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +EYA S +L ++ND+LD S+IE ++ L P +L E + Q A ++ Sbjct: 298 QVEYAALASESTEHLLKVINDILDFSRIERSELELEHIPFNLAEVIGACAQSFQHSAAQR 357 Query: 683 RILIRTSFANNIPRILADLR------SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 + ++ IP L DL+ ++QI +N++ NA+ FT G I + + + E Sbjct: 358 GLALQL----RIPEDLRDLQVQGDPTRIRQILVNLVGNALKFTEQGRVSIEAQWQSLDHE 413 Query: 737 VI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ VRD+G+G++ LE F Q +S R GTGLGLP+A+ + + G Sbjct: 414 LLWFTCAVRDSGIGISPESLELMFNAFQQADSSISRRYGGTGLGLPIARTLAERMGGTLR 473 Query: 794 IFSTPAKGTL--IEIIFPLYDTSHP 816 S +G++ +EI LY + P Sbjct: 474 AQSEEGRGSVFTLEIPLALYKQALP 498 >gi|260902965|ref|ZP_05911360.1| para-aminobenzoate synthase [Vibrio parahaemolyticus AQ4037] gi|308107447|gb|EFO44987.1| para-aminobenzoate synthase [Vibrio parahaemolyticus AQ4037] Length = 566 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 7/237 (2%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 +K AE+ +F+A ++HE+RTPL ++G +E++ + G + R +Y + +SG Sbjct: 195 RKRAEESEKATKEFVAMINHELRTPLNGVLGSAELLSKTQLGE--DQR--QYLGNLIQSG 250 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L+ I+NDLLD SK+ +G M + + + D+ + A EKRI I Sbjct: 251 DLLRVIINDLLDFSKMNAGMMEIIDKVFAWDDLEKAITGVFAAKAAEKRIHFSIDKKLGI 310 Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 P L DL + QI +N++ NAI FT GG ++ N V DTG+G+ Sbjct: 311 PEFLIGDLERITQILVNLIGNAIKFTHLGG--VVLRVEWVNGTAFFEVEDTGIGIPLAAQ 368 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 PF Q+ S + EG+GLGL + K +VD G+ S KGT ++ PL Sbjct: 369 SSLFDPFVQVDRSAKRSFEGSGLGLAICKNLVDLMQGEISFESEERKGTTFKVSIPL 425 >gi|158337403|ref|YP_001518578.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] gi|158307644|gb|ABW29261.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] Length = 790 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 133/243 (54%), Gaps = 11/243 (4%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 E+ +L +A + KS+FL+ +SHE+RTPL AI+GFS++++ P P + Sbjct: 323 ERIQLQRTADLAAAANQAKSEFLSNMSHELRTPLNAILGFSQLLQQD---PQIPPHQQKQ 379 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + I++SG +L ++ND+L++SKIE+G L P+ L E + ++++L A K++ Sbjct: 380 LDIINQSGTHLLALINDILEMSKIEAGFSTLKQSPIELQELLDSVKAMMELKATAKQLGF 439 Query: 687 RTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG------GQIIISTTHTSNEEVIL 739 ++ +P+ + D V+QI +N+LSNAI FT G I ++ + ++ Sbjct: 440 EFVYSPALPQFIEVDAGKVRQILMNLLSNAIKFTQKGYVSLTVDAIYPASDSSGLMQLRF 499 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V+DTG+G+ E+E+ PF Q S +I GTGLGL L++ G + S Sbjct: 500 AVKDTGLGIAPEEIEQLFTPFVQTA-SGRITQMGTGLGLALSRKFAQLMKGDITVDSVVD 558 Query: 800 KGT 802 +G+ Sbjct: 559 QGS 561 >gi|78356407|ref|YP_387856.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218812|gb|ABB38161.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 974 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 80/262 (30%), Positives = 133/262 (50%), Gaps = 13/262 (4%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + +L + AE S KS+FLA +SHEIRTPL AIIG +E+ + P G + Sbjct: 448 RAQKQLEKTSREAEAASRSKSEFLANMSHEIRTPLNAIIGLTELSLQEDL-PEGVGENLR 506 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + S +LDIVND+LD++++ESGK++L SL + + +++ A K + Sbjct: 507 ASL---SSAEALLDIVNDILDLARVESGKLHLEEVEFSLPRFLGGVMRVMRHEAERKGLD 563 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN------EEV 737 +PR ++ D ++QI +N++ NAI FT GG + + +S + V Sbjct: 564 FSMFLGRGLPRELMGDSGRLRQILVNLIGNAIKFTEEGGVNVAVECVSSSGGYIAGVQRV 623 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V+DTG+G+ + + F Q S + GTGLGL +++ +V+ G + S Sbjct: 624 RFTVQDTGIGIPEHLHGIIFENFRQADGSITRKYGGTGLGLTISRQLVEMMGGSISLRSE 683 Query: 798 PAKGTLIEIIFPLYDTSHPHDC 819 KG+ E+ P + + H C Sbjct: 684 AGKGSRFEVELP-FKVAETHAC 704 >gi|325921446|ref|ZP_08183302.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC 19865] gi|325548088|gb|EGD19086.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC 19865] Length = 1054 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 129/229 (56%), Gaps = 3/229 (1%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S +KS+FLA +SHE+RTPL + + ++++ + + G L +P ++YA I S N +L ++ Sbjct: 363 SRYKSEFLANMSHELRTPLNSALILAKLLADNKDGTL-SPEQVKYAQAILSSNNDLLALI 421 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILAD 700 ND+LD+SKIE+G + L E ++ + + A +K + ++ + + P +++ D Sbjct: 422 NDILDLSKIEAGHVELADETIATSSVLQRLRETFEPLARQKGLALQITADADAPTQLVMD 481 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 + ++QI N+L+NAI FT G + +S + V+ +V+DTG+G+ + E + F Sbjct: 482 SQRLQQILKNLLANAIKFTEHGS-VSLSLQAQAPGRVLFKVQDTGIGIAREQTEIIFEAF 540 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q S + R GTGLGL +++ + G + S P +G+ + P Sbjct: 541 RQADGSTRRRYGGTGLGLSISRDLAQRMGGSIRVDSEPGRGSCFTLELP 589 >gi|300867587|ref|ZP_07112236.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300334394|emb|CBN57406.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 780 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 82/265 (30%), Positives = 133/265 (50%), Gaps = 12/265 (4%) Query: 554 YSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 ++ M D +E KQ +++ + A+ AE + K +FLA +SHE+R+PL A++G+ Sbjct: 365 FAKIMRDFTERKQAEDERAQLLIREQNARTQAETANRMKDEFLATLSHELRSPLNAMLGW 424 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 ++ ++F + +E I+RS +V DLLD+S+I GK+ L+ PV L Sbjct: 425 LRLLNTRKFDEKTTAKAMET---IERSARAQAQLVEDLLDVSRIIQGKVRLNVRPVELVT 481 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 + A+ V+ A K I ++T F + + D ++QI N+LSNA+ FT GGQ+ Sbjct: 482 VIEAALDTVRPAAEAKEIRLQTIFDSTGGLVAGDSDRLQQIVWNLLSNAVKFTLKGGQVQ 541 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + N V + VRDTG+G+ L F Q +S G G+GL + + +V+ Sbjct: 542 VYLERV-NSHVEISVRDTGLGIKPDFLPFVFDRFRQADSSIARTYTGLGIGLAIVRHLVE 600 Query: 787 ANMGKFYIFS-TPAKGTLIEIIFPL 810 + G S KG I PL Sbjct: 601 LHGGSVRAQSEGEGKGATFTIKLPL 625 >gi|91781778|ref|YP_556984.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans LB400] gi|91685732|gb|ABE28932.1| amino acid-binding domain sensor hybrid histidine kinase / PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans LB400] Length = 1490 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 84/260 (32%), Positives = 134/260 (51%), Gaps = 8/260 (3%) Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 S +S D S ++L+ A+ +AE + K DF A +SHEIRTP+ ++G EV+ Sbjct: 811 SVVWSGYWVDASVEHARSDELARARDLAEAAARAKDDFFAMMSHEIRTPMNGVLGLVEVL 870 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + PL N E I S +L I++DLLD SKIE+G++ + E + + E V Sbjct: 871 ERT---PL-NTDQGEMLGMIHESAGALLQILDDLLDYSKIEAGRLTIEAESIDIRELVDN 926 Query: 671 AISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QII 726 A+ L+ A+EK + +R A ++ L D ++QI N+L NAI FTP G ++ Sbjct: 927 AVGLLAGRAHEKGLKVRVDIAPDVAATLRGDSVRLRQILFNLLGNAIKFTPQGEVDVRVS 986 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + + + + V DTG+G+ + +PF Q +S R GTGLGL + + ++D Sbjct: 987 VFAQADGVQTLEMTVEDTGIGIAPEVQNRLFEPFVQAESSTTRRFGGTGLGLTICRKLID 1046 Query: 787 ANMGKFYIFSTPAKGTLIEI 806 G + S P GT + + Sbjct: 1047 LMGGSLALHSEPGSGTRMTV 1066 >gi|313147366|ref|ZP_07809559.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313136133|gb|EFR53493.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 955 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 84/256 (32%), Positives = 134/256 (52%), Gaps = 14/256 (5%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + DI++ ++ +L AK +AE+ KS FLA +SHEIRTPL AI+GFS+++ N Sbjct: 554 IRVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSE- 612 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE-AISL 674 EY I+ + L+L ++ND+LD+SK+ESG + L +E L E + A S+ Sbjct: 613 ---EQADREEYMQIINTNNELLLKLINDILDLSKLESGSVELKYEDFDLAEYFNGMASSM 669 Query: 675 VQLYAN-EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 Q N E R++ + ++ + D V Q+ N ++NAI +TP G I Sbjct: 670 KQRMVNPEVRLVTINPY--DVCLVKLDRNRVAQVMTNYVTNAIKYTPKGS--IEMGYEVM 725 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + + L V+DTG+G+ + K F ++ Q GTGLGL + KA+ ++ G Sbjct: 726 DTGIRLYVKDTGIGIPEEKKNKVFHRFEKLDEFAQ----GTGLGLSICKAITESMGGSVG 781 Query: 794 IFSTPAKGTLIEIIFP 809 S +G+L I P Sbjct: 782 FESKYHEGSLFWAIIP 797 >gi|296283542|ref|ZP_06861540.1| multi-sensor hybrid histidine kinase [Citromicrobium bathyomarinum JL354] Length = 1446 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 97/381 (25%), Positives = 182/381 (47%), Gaps = 17/381 (4%) Query: 443 NKRKMEIEVM----QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 ++++ E E+ QL + E +D + + +G L + + + G P E ++ Sbjct: 788 DRKRFEKEIAERDKQLAILAENATDAVFRVELDGTCLYASPSAKDVLGVPSEHLIGTNAL 847 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI---IIKKLPFSSC-- 553 + M ++ S ++Q + STK++ L ++K Sbjct: 848 DGFHPDDQDRMWSLFDDLRSGRIKQIVAAYRWRSTKDDDYRWLEANAGLVKDQQSDEAKE 907 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 S+++ DI + K+ + L A++ AE ++ K+ FLA +SHEIRTP+ ++GF+E++ Sbjct: 908 VSVSIRDIGDRKKMELDLVAARQNAETAAAAKATFLANMSHEIRTPMNGVVGFTELLLAG 967 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 +P E A I SG ++ I+ND+LD+SKI++G+M + EP+ L + + Sbjct: 968 EL----SPEQRENAQLIADSGRAMMQILNDILDVSKIDAGQMTIVREPIDLRHKLQSCMR 1023 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG---GQIIIST 729 L++ A +K + ++P R++AD ++QI N++ NAI FT G ++ I Sbjct: 1024 LLEPTARQKGLKFELLIDEDVPSRVMADPLRLRQILTNLVGNAIKFTAKGIVNCRVSIER 1083 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 E + + V D+G+G+ L+ + F Q S GTGLGL ++ + Sbjct: 1084 GPEDQETLCIAVEDSGIGIPADRLDAIFREFSQADESTARIYGGTGLGLTISNELAKMMD 1143 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G+ + S G++ + PL Sbjct: 1144 GELLVSSELGHGSVFTLRLPL 1164 >gi|295114872|emb|CBL35719.1| Signal transduction histidine kinase [butyrate-producing bacterium SM4/1] Length = 596 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 83/252 (32%), Positives = 127/252 (50%), Gaps = 14/252 (5%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + +L A + AEK + KS+FL+R+SHEIRTP+ IIG +I Q G + R + Sbjct: 343 QKELEAAIQQAEKANRAKSEFLSRMSHEIRTPMNGIIGMG-MIAMQNLGD--SSRVEDCI 399 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRI 684 I+ S +L ++ND+LD+SKIESG++ + F+ E+VS IS A +K + Sbjct: 400 RKINLSSRHLLTLINDVLDMSKIESGRIEIKRDVFDFRLFLESVSNVIS---GQARDKGL 456 Query: 685 LIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---- 739 F ++ + D V QI +N+LSNA+ FTP GG I++ + + Sbjct: 457 NFDVIFLGDMEEELFGDALRVNQILMNLLSNALKFTPEGGSIVLRIAKMDEDSTTVWLKF 516 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG G+ EK PF Q GTGLGL +++ + G+ + S Sbjct: 517 EVSDTGCGIEEKNYEKIFMPFEQEHEDISHVYGGTGLGLSISRRFAELMDGRLTVSSQVG 576 Query: 800 KGTLIEIIFPLY 811 KG+ + PL+ Sbjct: 577 KGSTFTLTMPLW 588 >gi|261200755|ref|XP_002626778.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis SLH14081] gi|239593850|gb|EEQ76431.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis SLH14081] gi|239607275|gb|EEQ84262.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis ER-3] Length = 2346 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 123/238 (51%), Gaps = 10/238 (4%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H K+ E + KS FLA VSH++RTP+ +IG SE++K + Y I Sbjct: 1827 HNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLSELLKKTSL----DREQDGYVESIRV 1882 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 + +L ++ND+LD SK+E+GKM + P++L E ++E + ++ + + Sbjct: 1883 CADTLLTLINDILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDCGLKTIEDLDG 1942 Query: 693 NIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVG 747 P +L D + QI +N+LSN+ FTP G + + +E + +V DTG+G Sbjct: 1943 VDPNLLVMGDPVRLHQIFMNLLSNSYKFTPKGSVTVKAKVTDEDEGRIRITCKVADTGIG 2002 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLI 804 ++ +L + +PF Q +S G+GLGL + KA++ D GK ++ S GT + Sbjct: 2003 ISGEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEEGVGTTV 2060 >gi|229198736|ref|ZP_04325434.1| hypothetical protein bcere0001_42600 [Bacillus cereus m1293] gi|228584758|gb|EEK42878.1| hypothetical protein bcere0001_42600 [Bacillus cereus m1293] Length = 558 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 96/376 (25%), Positives = 180/376 (47%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ L + + + + P Sbjct: 211 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEEYLDRLY--YESFHHPE 268 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 ++ + +E+I + K K + L + I++ F Sbjct: 269 II-------------ELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 315 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 316 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 359 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L V + + + Sbjct: 360 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHM 418 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+GG + + Sbjct: 419 VLDNKAGEKEISLQVNALKRVS-VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDK 477 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 478 YNAYI-KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 536 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 537 VDSEVGEGTTFTVVLP 552 >gi|212633456|ref|YP_002309981.1| PAS domain-containing protein [Shewanella piezotolerans WP3] gi|212554940|gb|ACJ27394.1| PAS domain protein [Shewanella piezotolerans WP3] Length = 1203 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 131/250 (52%), Gaps = 8/250 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ K+ + + AK+ AE + +KS+FLA +SHEIRTP+ AIIG ++ + Sbjct: 663 THKDITRHKRNEVAMLEAKQDAEMANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSL- 721 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L Y+E A++ S + +L I+ND+LD SKIE+GK+ L LD+ + A+ L Sbjct: 722 TLQQKDYLEKADF---SAHSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHALDLNA 778 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 L A EK + + IL D + Q+ +N+LSNA+ FT SG ++ + Sbjct: 779 LKAQEKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTKSGEIELGCEDVGERD 838 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + L+ VRDTG+G++ + F Q S + GTGLGL ++K +V G Sbjct: 839 HRITLKFWVRDTGIGISKEQQAILFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTM 898 Query: 793 YIFSTPAKGT 802 + S G+ Sbjct: 899 QVESEMGVGS 908 >gi|315647993|ref|ZP_07901094.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453] gi|315276639|gb|EFU39982.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453] Length = 894 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 79/252 (31%), Positives = 128/252 (50%), Gaps = 11/252 (4%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++L + K EK S +KS FLA +SHE+RTPL +++ S+++ + G L YA+ Sbjct: 481 SELENYAKELEKSSKYKSQFLANMSHELRTPLNSMLILSQILSENKQGNLTEEEQ-HYAS 539 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I SG+ +L+++ND+LD+SK+E+GK+ + + V+L E A K + Sbjct: 540 VIHNSGSELLNLINDILDLSKVEAGKLQIEMDLVNLTELPEVMEGYFSKSAESKNLEFEI 599 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---------QIIISTTHTSNEEVI 738 A ++P ++ +D + QI N+LSNAI FT SG I+ S S E + Sbjct: 600 EMAEDLPDMMYSDGMRLHQILRNLLSNAIKFTESGSVKLSVKKMNSIVTSDFIISGEVIA 659 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG+G+ L+ + F Q + R GTGLGL ++ + G + S Sbjct: 660 FSVEDTGIGIAAEHLQPIFEAFQQGEETTARRFGGTGLGLSISLHLAKLLGGYITVESEE 719 Query: 799 AKGTLIEIIFPL 810 G++ + PL Sbjct: 720 GSGSIFVLYLPL 731 >gi|300869348|ref|ZP_07113938.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300332647|emb|CBN59136.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 1504 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 138/252 (54%), Gaps = 13/252 (5%) Query: 557 TMHDISEWKQ---EKNKLSH----AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 T DI KQ E+++L A++ AE+ + K +FLA +SHE+R+PL I+G++++ Sbjct: 1103 TATDIEAQKQLEVERDRLLQLEQTAREAAERANRIKDEFLAILSHELRSPLNPILGWTKL 1162 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 ++ ++F + + E I+R+ L +++DLLD++KI GK+++ PV+L + Sbjct: 1163 LQTRKFNEI---KTAEALATIERNAKLQCQLIDDLLDVAKILRGKLSIDTTPVNLVFVIE 1219 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 AI V+ A K IL+ NI ++ D ++QI N+LSNAI FTP+GG++ I Sbjct: 1220 SAIDTVRTAAVSKSILLHPVLP-NIGQVAGDSTRLQQIVWNLLSNAIKFTPNGGRVDIRI 1278 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + I+ V DTG G+ L + F Q S + G GLGL + + +V+A+ Sbjct: 1279 ERVKDSAHII-VSDTGKGINPAFLPYIFESFRQEDVSITRKYGGLGLGLAIVRNLVEAHG 1337 Query: 790 GKFYIFSTPAKG 801 G +P +G Sbjct: 1338 GTISA-DSPGEG 1348 >gi|134045335|ref|YP_001096821.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C5] gi|132662960|gb|ABO34606.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C5] Length = 639 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 130/228 (57%), Gaps = 8/228 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+ +A VSHE+RTPLT+I G+ E++ + G + + + + D + + ++ + Sbjct: 413 KSELIAIVSHELRTPLTSIKGYVELVLDGTMGAINDSQR-KCLQVADDNIVRLRRLIESM 471 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL--ADLR 702 LD+SKIE G++ ++ E V++ E V + I ++ A EK I N+ +I AD Sbjct: 472 LDLSKIERGELEMYREKVNICEIVGDVIQYLKPLATEKNI----KLNKNVEKITLEADKD 527 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 + Q+ N++ NAI F+P+ I+++ T +E + L+V D G G+ ++EK F Q Sbjct: 528 RITQVLTNLIENAIKFSPANESILVNGT-LEDEGLHLKVTDHGAGIPKKDMEKVFDRFYQ 586 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + +S + + G+GLGL + K++V+A+ G ++ S KG+ II P+ Sbjct: 587 VDSSTKRKKGGSGLGLAVCKSIVEAHGGSIWVESELGKGSTFHIILPI 634 >gi|317048907|ref|YP_004116555.1| integral membrane sensor hybrid histidine kinase [Pantoea sp. At-9b] gi|316950524|gb|ADU69999.1| integral membrane sensor hybrid histidine kinase [Pantoea sp. At-9b] Length = 950 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 134/253 (52%), Gaps = 7/253 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S+ KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 446 DVSARVRMEQSLQEMAQAAEQASASKSMFLATVSHELRTPLYGIIGNLDLLQTKAL-PKG 504 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + N S +L+L I++D+LD SKIES ++ + P S E ++ + Sbjct: 505 VDSLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPRPFSPREVINHIVGNYLSLV 561 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 KR+ + N++P L D ++Q+ N+L+NAI FT +G I+ + H + Sbjct: 562 VRKRLALYVFIENDVPLALEGDPLRLQQVISNLLNNAIKFTHTGCIILHAYEHEG--YLA 619 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 RVRDTGVG+ E+ + PF Q+ + Q +GTGLGL + + +++ G + S P Sbjct: 620 FRVRDTGVGIPAKEVTRLFDPFFQVGSGVQRNFQGTGLGLAICEKLINMMDGDIEVDSEP 679 Query: 799 AKGTLIEIIFPLY 811 G+ + P+Y Sbjct: 680 GMGSQFVVRIPIY 692 >gi|117618556|ref|YP_854589.1| virulence sensor protein BvgS [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559963|gb|ABK36911.1| virulence sensor protein BvgS [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1195 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 125/234 (53%), Gaps = 12/234 (5%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPLGNPRY-IEYANYIDRSGN 635 A++ + KS FLA +SHEIRTP+ AIIG E+ ++ R I + + D Sbjct: 699 AQEANRAKSTFLATMSHEIRTPMNAIIGLLELTLRRDRLHEEDKTSLSIAHGSAKD---- 754 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L ++ D+LDISKIESG++ L EP + + +++ A +K + + A P Sbjct: 755 -LLSLIGDILDISKIESGRLELRPEPHEITALTASVVTVFTALARQKNL--QLELAAGEP 811 Query: 696 R-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VRDTGVGMTNYE 752 R + D KQI N++SNAI +T G + + TS+ L+ +RDTG+G+ E Sbjct: 812 RWVQIDGICYKQILSNLISNAIKYTEQGAVRVELQSKTSDGWCTLQLVIRDTGIGIAPAE 871 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 + +PFGQ + I+ GTGLGL +++++ ++ G + S P GT I I Sbjct: 872 QARLFQPFGQARQPEHIQRSGTGLGLMISRSLCESMGGSLLLESEPGHGTCISI 925 >gi|229589354|ref|YP_002871473.1| putative two-component system sensor kinase [Pseudomonas fluorescens SBW25] gi|229361220|emb|CAY48084.1| putative two-component system, sensor kinase [Pseudomonas fluorescens SBW25] Length = 633 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 72/258 (27%), Positives = 131/258 (50%), Gaps = 9/258 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E +Q +L ++ AE+ ++ KSDFLA +SHE+RTP+ ++G ++++ Sbjct: 243 EQQQAMAQLIQTREEAERANNAKSDFLAMMSHELRTPMNGVLGMLQLMETTEM----TEE 298 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 EYA S +L ++ND+LD S+IE + L P +L + ++ Q A ++ Sbjct: 299 QSEYAALASESTEHLLKVINDILDFSRIERAALELEHIPFNLADLINSCAQAFQHSAQQR 358 Query: 683 RILIRTSFANNIP--RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-- 738 + ++ S + R+ D ++QI +N++ NA+ FT +G + T + +++ Sbjct: 359 GLALQLSIPQGMDALRVQGDPTRIRQILVNLIGNALKFTENGSVSVEPHWQTLDHDLVWF 418 Query: 739 -LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 VRD+G+G++ LE F Q +S R GTGLGLP+A+ + + G S Sbjct: 419 TCTVRDSGIGISADRLELMFDAFQQADSSISRRYGGTGLGLPIARTLAERMGGTLRAQSE 478 Query: 798 PAKGTLIEIIFPLYDTSH 815 ++G++ + PL H Sbjct: 479 ESRGSVFTLEIPLAIDQH 496 >gi|212634459|ref|YP_002310984.1| PAS domain-containing protein [Shewanella piezotolerans WP3] gi|212555943|gb|ACJ28397.1| PAS domain protein [Shewanella piezotolerans WP3] Length = 1192 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 109/378 (28%), Positives = 173/378 (45%), Gaps = 53/378 (14%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAV--------SKLFGYPVEDIL-----RKPFTVF 500 L + LE + DG+ I+ G I N + S L G +E L R F Sbjct: 361 LLATLEGSKDGLITIDITGEIQEVNDSACLMFQAHSSALVGERMETCLFQGGARATFREI 420 Query: 501 LEQNTPSVMNHYL---TEILS-------LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 LE+ + TEI + L + TL + LG EE LL+ I Sbjct: 421 LEEYRLTGAGKAFKNATEIFATRFDGKLLPIELTLIPVQLG---EEMLLTAFI------- 470 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 DIS + + +L AK+ AE+ S KS FLA +SHEIR+PL A++G +++ Sbjct: 471 --------RDISRRMEYETQLKLAKEQAEQGSKAKSRFLATMSHEIRSPLNAVLGSVDLL 522 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + R N YAN +G +L +ND+LD SKIE+G+M L S + V++ Sbjct: 523 LDSRL----NKEQRIYANTAKEAGTALLSTINDILDFSKIEAGQMLLEKSSFSAAKLVTQ 578 Query: 671 AISLVQLYANEKRILIRTSFAN-NIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 + ++ A +K I + SF N N+P ++ D + ++Q+ N++ NAI F+ SGG I + Sbjct: 579 VLQILSPKAQDKGITL-ASFVNCNVPESLIGDGQRLRQVLQNLVDNAIKFS-SGGCIAVE 636 Query: 729 T----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + ++ V D G+G++ K F Q+ + GTGLGL + + Sbjct: 637 MWLLESQQGKAQLCCTVTDQGIGISEEAQLTLFKEFSQVHDEHNTNYSGTGLGLAICAEL 696 Query: 785 VDANMGKFYIFSTPAKGT 802 + G + S +G+ Sbjct: 697 ITRMEGSIAVRSEQGRGS 714 >gi|152989138|ref|YP_001348375.1| kinase sensor protein [Pseudomonas aeruginosa PA7] gi|150964296|gb|ABR86321.1| kinase sensor protein [Pseudomonas aeruginosa PA7] Length = 936 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 80/258 (31%), Positives = 136/258 (52%), Gaps = 15/258 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS KQ + +L+ AK +A+ + K+ FLA +SHEIRTPL ++G E++ Sbjct: 434 DISARKQIEAELARAKLLADAANEAKTLFLATMSHEIRTPLYGVLGTLELLGRTEL---- 489 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQ 676 + + Y I RS +L +++D+LD+SKIE+G+++L F PV L E V ++ + Sbjct: 490 SRQQAGYLQAIQRSSATLLQLISDVLDVSKIEAGQLDLESMEFAPVELTEEVVQSFAAA- 548 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A+ K + + + +P R+ S++QI N+LSNA+ FT +G + + Sbjct: 549 --AHAKGLQLYACLSPELPERMRGAAASIRQILNNLLSNAVKFTDNGHISVRLKASVVDA 606 Query: 736 EVIL---RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 E ++ +V DTG G+ + + PF Q+ S+Q+ GTGLGL +++ + G Sbjct: 607 ECVMLTWQVNDTGTGVAAEDQHRLFDPFYQVRRSEQLLA-GTGLGLSISQRLAQLMNGNL 665 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S G+ + PL Sbjct: 666 RLVSELGLGSSFSLRLPL 683 >gi|29346408|ref|NP_809911.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|253568192|ref|ZP_04845603.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|29338304|gb|AAO76105.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|251842265|gb|EES70345.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 810 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 78/255 (30%), Positives = 129/255 (50%), Gaps = 14/255 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +DI+ K+ + KL A+ AE+ KS FLA +SHEIRTPL AI+GFS ++ Sbjct: 565 YDITTLKETEQKLIIARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETE---- 620 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 +Y + + +L+L +++D+LD++KIE+G N + + ++E SE I + Sbjct: 621 SKEECQDYIKIVQDNNDLLLRLISDILDLAKIEAGTFNFVYADLDVNEVCSEIIKSTGMK 680 Query: 679 ANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 I+ F IP I D Q+ N ++NA+ FT G I + S+++ Sbjct: 681 VKGN---IKLLFEKQIPECHIYTDKNRFMQVITNFINNALKFTHE-GTIALGYEQISSQK 736 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + VRDTGVG+ ++ + F ++ N Q GTGLGL + K+++ G+ + S Sbjct: 737 IRFYVRDTGVGIPASKINSVFERFVKLNNFVQ----GTGLGLSICKSIITQMEGEIGVDS 792 Query: 797 TPAKGTLIEIIFPLY 811 T G+ P + Sbjct: 793 TEGAGSCFWFTLPYH 807 >gi|302670218|ref|YP_003830178.1| two component system histidine kinase/response regulator hybrid protein [Butyrivibrio proteoclasticus B316] gi|302394691|gb|ADL33596.1| two component system histidine kinase/response regulator hybrid protein [Butyrivibrio proteoclasticus B316] Length = 1022 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 79/259 (30%), Positives = 134/259 (51%), Gaps = 24/259 (9%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + + + +I + + KS FL+ +SHEIRTP+ A++GF E+I + + Sbjct: 393 ELVKTRQNIEDQLEIEKSANEAKSRFLSNISHEIRTPINAVLGFDEMILRES----SDES 448 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +EYA I SG +L ++ND+LD SKIE+GKM + L +++ +++ ++ A EK Sbjct: 449 ILEYAKDIQSSGKTLLALINDVLDFSKIEAGKMEIIPVEYELSSVINDLVNMAKMRAAEK 508 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---------- 731 R+ +IP +L D +KQ LNIL+NA+ +T G I +S + Sbjct: 509 RLEFTVDVNKDIPHMLFGDEVRIKQCILNILTNAVKYTEEGS-INLSIDYEEAPEGTADD 567 Query: 732 TSNEEVIL--------RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 T +EV + RV+DTG+G+ ++EK F +I + EGTGLG+ + + Sbjct: 568 TLEDEVSIDDYIFLKVRVKDTGIGIREEDIEKLSAAFERIDEKRNRTIEGTGLGINIVNS 627 Query: 784 MVDANMGKFYIFSTPAKGT 802 ++ K + S +G+ Sbjct: 628 LLAMMGSKLCVKSVYGEGS 646 >gi|218133952|ref|ZP_03462756.1| hypothetical protein BACPEC_01841 [Bacteroides pectinophilus ATCC 43243] gi|217991327|gb|EEC57333.1| hypothetical protein BACPEC_01841 [Bacteroides pectinophilus ATCC 43243] Length = 874 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 85/261 (32%), Positives = 137/261 (52%), Gaps = 19/261 (7%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I E Q++N L A A+ + KS FL+ +SH+IRTPL +IIG ++++K+ P Sbjct: 561 IEEANQKRN-LQDALSAAKLANEAKSRFLSNMSHDIRTPLNSIIGMTDILKSH---PDDT 616 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + E + I SG +L+++ND+LD+S+IESGKM+L ++ +SE I LV+ A Sbjct: 617 KQVEEGLDKISMSGRHLLELINDILDMSRIESGKMSLQESGFNIRAMMSELIELVRPQAL 676 Query: 681 EKRILIRTSFANNIPRI-----LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN- 734 I +F ++I I + D +KQI LNILSNA+ +T +GG I I+ + Sbjct: 677 GSGI----TFISDIVSIEHDNVIGDELRIKQIYLNILSNAVKYTWAGGSITITLREDGDV 732 Query: 735 -----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 I D G+GM+ + F + ++ GTGLG+ +A+ +V+ Sbjct: 733 KNGRRHSYIFICSDNGIGMSREFQKHIFDSFERAEDNAIGNVTGTGLGMAIARNLVNLMG 792 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G + S KG++ + PL Sbjct: 793 GTIDVDSRLGKGSVFTVTIPL 813 >gi|170079238|ref|YP_001735876.1| PAS domain-containing protein [Synechococcus sp. PCC 7002] gi|169886907|gb|ACB00621.1| PAS domain S-box protein [Synechococcus sp. PCC 7002] Length = 1430 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 134/241 (55%), Gaps = 7/241 (2%) Query: 565 KQEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 +Q+ NK L AK++AE + K+ FL +SHE+RTPL A++GF+++++ P + + Sbjct: 1083 RQQANKQLELAKELAEAANHAKNQFLTSMSHELRTPLNAVLGFTQIMER---SPDLSTDH 1139 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 EY + I RSG +L ++ND+L+++K E G + L+ +L + + + + L K Sbjct: 1140 QEYLSIIHRSGKHLLALLNDILNLAKFEKGTLQLNPNLFNLHDLLDDLAQMYALEIQHKN 1199 Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRV 741 I + + +PR + AD + + L++L+NA+ FT SG Q+ + T + + V Sbjct: 1200 IQLDIHWDEQVPRYINADQAKLHSVLLHLLNNALKFTDSGCVQLTVKTLAQNPLRLRFSV 1259 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ + + F ++ ++ G+G+GLGL L++ V+ G+ + S P G Sbjct: 1260 TDTGIGIAETDFTRLFDNFVKLEAGDRM-GQGSGLGLALSQKFVNLMGGEIVVSSQPGVG 1318 Query: 802 T 802 + Sbjct: 1319 S 1319 >gi|189424899|ref|YP_001952076.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189421158|gb|ACD95556.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 641 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 121/233 (51%), Gaps = 8/233 (3%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 SS K FLA++SHEIRTP+ AI G +E+ +Q P R E I + N +L ++ Sbjct: 273 SSAKGAFLAQMSHEIRTPMNAISGLTELALDQ--APSAQQR--ELLEGISHAANHLLSLI 328 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILAD 700 N +LD SK+E+G + L P +L + ++ + + K + T A+N+P R++ D Sbjct: 329 NQVLDFSKLEAGIVELEQIPFNLRQTLTATLLPFSVRVRSKGVRFETVLADNLPTRVIGD 388 Query: 701 LRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAM 757 ++Q+ +N++ NA+ FT G +I + + LR VRDTG+G+ ++ + Sbjct: 389 PTRLRQVLVNLVGNAVKFTRQGCIEIDVEKGEQTGNHCELRIMVRDTGIGIPQEKIAQIF 448 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 P+ Q S GTGLGL + K +++ G + S P GT + P+ Sbjct: 449 APYSQAAASTTREFGGTGLGLSIVKQLLEVMQGTITVESQPGAGTCFSVSVPV 501 >gi|313149705|ref|ZP_07811898.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313138472|gb|EFR55832.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 641 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 89/268 (33%), Positives = 129/268 (48%), Gaps = 24/268 (8%) Query: 549 PFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 PF L + HDI + + +L AK+ AE+ KS FLA +SHEIRTPL AI+GFS Sbjct: 247 PFEGNKVLALIHDIGDRIRRSQELLDAKRRAEEADRMKSLFLANMSHEIRTPLNAIVGFS 306 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 E+I EY I ++ NL+L ++ND+LD+S+IESGK +H + + Sbjct: 307 EIIALTE----DEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEISGL 362 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR------ILADLRSVKQIALNILSNAIHFTPS 721 E + R+ ++ N+ R I D V Q+ N LSNAI T Sbjct: 363 ADEVYKV-------HRLKMKKGVELNVIRPSDEIWISTDRNRVTQVLFNFLSNAIKNTIE 415 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 G I E V V DTG G++ +L F ++ + Q GTGLGLP+ Sbjct: 416 GS--ITFGLVKEEEWVKFYVADTGCGISKEKLPLIFTRFEKLNDFVQ----GTGLGLPIC 469 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K++V+ G+ + S KG+ + P Sbjct: 470 KSIVERLGGRIEVESELEKGSTFTLYLP 497 >gi|255009587|ref|ZP_05281713.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 1023 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 84/256 (32%), Positives = 134/256 (52%), Gaps = 14/256 (5%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + DI++ ++ +L AK +AE+ KS FLA +SHEIRTPL AI+GFS+++ N Sbjct: 622 IRVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSE- 680 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE-AISL 674 EY I+ + L+L ++ND+LD+SK+ESG + L +E L E + A S+ Sbjct: 681 ---EQADREEYMQIINTNNELLLKLINDILDLSKLESGSVELKYEDFDLAEYFNGMASSM 737 Query: 675 VQLYAN-EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 Q N E R++ + ++ + D V Q+ N ++NAI +TP G I Sbjct: 738 KQRMVNPEVRLVTINPY--DVCLVKLDRNRVAQVMTNYVTNAIKYTPKGS--IEMGYEVM 793 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + + L V+DTG+G+ + K F ++ Q GTGLGL + KA+ ++ G Sbjct: 794 DTGIRLYVKDTGIGIPEEKKNKVFHRFEKLDEFAQ----GTGLGLSICKAITESMGGSVG 849 Query: 794 IFSTPAKGTLIEIIFP 809 S +G+L I P Sbjct: 850 FESKYHEGSLFWAIIP 865 >gi|300362619|ref|ZP_07058795.1| sensor histidine kinase [Lactobacillus gasseri JV-V03] gi|300353610|gb|EFJ69482.1| sensor histidine kinase [Lactobacillus gasseri JV-V03] Length = 616 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 97/382 (25%), Positives = 186/382 (48%), Gaps = 44/382 (11%) Query: 444 KRKMEI---EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 +R EI E +L ++L +DG+ +R G I N G +D++ KP T Sbjct: 249 ERTQEISDSERRRLDNVLTHMTDGVIATDRHGNITIINETALDFLGKTEKDVIGKPITNL 308 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITL---GSTKEEKLL--SLRIIIKKLPFSSCYS 555 L L ++ DL T +++ + +T++E +L + +I + F S Sbjct: 309 LG----------LKDVTIQDLLSTQQELVVRVNDNTRDEMILHANFSLIQRVTGFVSGLV 358 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +HDI++ Q+KN E+E + F++ VSHE+RTPLT++ + E + + Sbjct: 359 CVLHDITQ--QQKN---------ERE---QQQFVSNVSHELRTPLTSLRAYVEALND--- 401 Query: 616 GPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 G +P ++ + I ++ ++NDLL +S+++ G + E V+L++ V+ ++ Sbjct: 402 GAWKDPNIAPQFLHVIQDETERMIRMINDLLSLSRMDRGVARMDLEWVNLNDFVNHVLNR 461 Query: 675 VQLY-------ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 + ++K+ I+ F + + D + Q+ NI++NAI ++P GG I + Sbjct: 462 FDMMLKSDSDKMHKKKYTIKREFPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITV 521 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + + VIL + D G+G+ +L K F ++ ++ + GTGLGL ++K +V+A Sbjct: 522 RLLQ-AQKHVILSISDQGLGIPRKDLNKIFDRFYRVDKARSRKQGGTGLGLAISKEIVEA 580 Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809 + G+ + S G+ I P Sbjct: 581 HHGRIWADSAEGAGSTFYISLP 602 >gi|294827940|ref|NP_711926.2| histidine kinase/response regulator hybrid protein [Leptospira interrogans serovar Lai str. 56601] gi|293385785|gb|AAN48944.2| histidine kinase and response regulator hybrid protein [Leptospira interrogans serovar Lai str. 56601] Length = 1205 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 139/244 (56%), Gaps = 3/244 (1%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 K+ + K E +KS+FLA +SHE+RTPL +++ S+ + + + L + +E A Sbjct: 532 KSDIEQKTKQLELSGKYKSEFLANMSHELRTPLNSLLILSKDLADNKRKNLSEDQ-VESA 590 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 N I +SG+ +L ++ND+LD+SKIESGKM+++ E V L + E +S +L A EK++ + Sbjct: 591 NIIYKSGHDLLVLINDVLDLSKIESGKMSVNLERVVLRKFAKELMSTFKLQATEKKLDLD 650 Query: 688 TSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 F +++P ++ D + QI N++SNA+ FT G++ + + ++++ V D+G+ Sbjct: 651 LIFDDDLPEVIRTDSHRLNQILKNLISNALKFTER-GKVQVEIKKQNKDKILFSVIDSGI 709 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ + + F Q S + GTGLGL +++ + G+ ++ S +G+ + Sbjct: 710 GIPEEKHSAIFEAFQQADGSTSRKYGGTGLGLSISRELAKLLGGEIFLKSKVNQGSTFSL 769 Query: 807 IFPL 810 P+ Sbjct: 770 SLPI 773 >gi|309780589|ref|ZP_07675335.1| response regulator/sensor histidine kinase [Ralstonia sp. 5_7_47FAA] gi|308920639|gb|EFP66290.1| response regulator/sensor histidine kinase [Ralstonia sp. 5_7_47FAA] Length = 1437 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 71/253 (28%), Positives = 129/253 (50%), Gaps = 8/253 (3%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D++ +++ + L AK AE K FLA +SHEIRTP+ ++G E+++ + Sbjct: 806 LSDVTAEREQADALEAAKNAAESALHAKDRFLAMMSHEIRTPMNGVLGLVELLQQTKL-- 863 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + + + SG +L I++D+LD +K+E+G++++ L E + L+ Sbjct: 864 --EGEQKQMVSLVQDSGRALLHILDDILDYAKVEAGRLDISPSATDLREVFDGTVGLLAS 921 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE 735 A+EK + + A +P + D ++QI N+LSNAI FT +G ++ T +++ Sbjct: 922 RAHEKALAMHVDVAAEVPASVSVDGIRLRQILFNLLSNAIKFTDAGSVRLSAKCTDVTDD 981 Query: 736 --EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + + V DTG+G++ PF Q S R GTGLGL +++ + G+ Sbjct: 982 TAHLAISVSDTGIGISPEVQATLFAPFVQAERSTTRRYGGTGLGLAISRQLAGLMGGELV 1041 Query: 794 IFSTPAKGTLIEI 806 + S P GT + + Sbjct: 1042 MESAPGHGTAVTL 1054 >gi|295690575|ref|YP_003594268.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] gi|295432478|gb|ADG11650.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] Length = 1128 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 134/239 (56%), Gaps = 4/239 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ S +KSDFLA +SHE+RTPL +++ S+++ + G L +++A I+ SGN +L Sbjct: 455 EQASQYKSDFLANMSHELRTPLNSLLILSKLLSDNPNGNL-TAEQVKFAQTIESSGNDLL 513 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++ND+LD+SKIE+G + + E VSL + L A+ +++ A + P ++ Sbjct: 514 SLINDILDLSKIEAGHIEVRPESVSLQRLTGDLRQLFNPVADSRKLDFAIEVAADCPLVV 573 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + ++Q+ N+LSNA FT GG + + SN+ + V+DTG+G++ + E Sbjct: 574 ETDRQRLEQVLKNLLSNAFKFTEKGG-VRLEIKAASNDRIAFAVKDTGIGVSRDQQEAIF 632 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL-YDTSH 815 + F Q + + GTGLGL +++ + G + S P +G++ + P+ YD + Sbjct: 633 EAFRQADGTISRKYGGTGLGLSISRQLSRLLGGSITLESQPGEGSVFTVTIPVAYDPAR 691 >gi|254457181|ref|ZP_05070609.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium GD 1] gi|207085973|gb|EDZ63257.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium GD 1] Length = 1127 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 80/255 (31%), Positives = 134/255 (52%), Gaps = 10/255 (3%) Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 Y DI++ K + +L A +IAE+ KS+FLA +SHEIRTP+ +IG ++ N Sbjct: 520 SYVAIRTDITDKKAAELELIEANEIAEESVKAKSEFLATMSHEIRTPMNGVIGMLGLLMN 579 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + + A+ + S +L ++ND+LD SK+E+ KM L +L + + Sbjct: 580 TKLDETQRRQ----ASLAEGSAKALLTLINDILDFSKLEAEKMELDNIDFNLRDELETFR 635 Query: 673 SLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + + A EK I + ++ I+ ADL ++QI NI+ NA+ FT S G ++I + Sbjct: 636 DTIAIKAQEKGIEVILDTSDIKTDIINADLGRIRQILFNIVGNAVKFT-SKGHVLIKASL 694 Query: 732 T----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 T N +IL++ DTG+G+ N +L++ + F Q+ S + GTGLGL + + + Sbjct: 695 TLVDKVNARLILKMSDTGIGIPNDKLDRLFESFSQVDASTTRKYGGTGLGLAIVQKLCSL 754 Query: 788 NMGKFYIFSTPAKGT 802 GK + S G+ Sbjct: 755 MGGKIDVKSDLGHGS 769 >gi|160935404|ref|ZP_02082786.1| hypothetical protein CLOBOL_00299 [Clostridium bolteae ATCC BAA-613] gi|158441762|gb|EDP19462.1| hypothetical protein CLOBOL_00299 [Clostridium bolteae ATCC BAA-613] Length = 948 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 127/230 (55%), Gaps = 10/230 (4%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE + K +FL+R+SHEIRTP+ AI+G S++ P + E I S + Sbjct: 560 AEAANRAKGEFLSRMSHEIRTPMNAIVGLSDLTSMMDDVP---EQVRENLGKIRSSSQYL 616 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L +++D+LD+S+IESGKM + E S++ AV E ++ A + + + Sbjct: 617 LRLISDILDMSRIESGKMTVSNEAFSMNRAVEELEDMLTAEATRRGLEFTVEKDVENRTL 676 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--SNEEVI--LRVRDTGVGMTNYEL 753 + D+ ++Q+ N++SNA FTP+GG II+ T T +N++VI +V D GVG++ Sbjct: 677 MGDVIRLQQVLTNLVSNAFKFTPAGGSIIMRVTRTKSTNQQVIYKFQVIDNGVGISVENQ 736 Query: 754 EKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 ++ F Q+ PN + +GTGLGL +++ +V G+ + S KG+ Sbjct: 737 KRVFGAFEQVGPNYS--KSQGTGLGLTISRTIVGLMGGELKLKSELGKGS 784 >gi|114569187|ref|YP_755867.1| PAS/PAC sensor signal transduction histidine kinase [Maricaulis maris MCS10] gi|114339649|gb|ABI64929.1| PAS/PAC sensor signal transduction histidine kinase [Maricaulis maris MCS10] Length = 535 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 77/256 (30%), Positives = 124/256 (48%), Gaps = 18/256 (7%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 +HD+ E +Q+ + S AK S FLA +SHE+RTP+ ++G S ++ Sbjct: 280 IHDLVEARQQATEASRAK----------SRFLATMSHEVRTPMNGVLGMSALLATTDL-- 327 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 P E N I+ SG +L I+ND+LD++ IESG+ + + + E V ++ Sbjct: 328 --EPSQREMVNLIEGSGQALLTILNDILDLANIESGRFEVEQDTFNPAELVRTVAGPYRM 385 Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTS 733 A EK + + R ++ D V+QI N+LSNA+ F+ G + +++ T Sbjct: 386 KAMEKGLNLHLEIDPVAEREVVGDPARVRQILSNLLSNAVKFSDRGEVRVRCLMTQTADR 445 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +V V DTG+GM + + PF Q Q + GTGLGL +AK + + G Sbjct: 446 AHDVTFEVGDTGIGMDGDLMSRIFMPFSQGEAVMQRKNGGTGLGLAIAKKLAELMGGDIT 505 Query: 794 IFSTPAKGTLIEIIFP 809 + S P G+ + P Sbjct: 506 VESAPGAGSKFTVKLP 521 >gi|56479368|ref|YP_160957.1| two-component hybrid sensor kinase/response regulator [Aromatoleum aromaticum EbN1] gi|56315411|emb|CAI10056.1| Two-component regulatory system protein containing hybrid kinase and response regulator domains [Aromatoleum aromaticum EbN1] Length = 1015 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 114/392 (29%), Positives = 182/392 (46%), Gaps = 34/392 (8%) Query: 440 TRINKRKMEI---EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 TR +R M + L +I +T + I +REG I+ N A + G L + Sbjct: 474 TRALERTMSVLRESTTLLRTIAASTPELIVAKSREGRIMMVNPAALQAMG------LSRA 527 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLR--QTLEKITLGSTKEEKLLSLRIIIKKLPF---- 550 V ++ + + + IL D R +T I + ++ + + ++ K P Sbjct: 528 QVVGHKEESLFGSSEEMRRILENDRRVIETRRPIVVEESRTTRAGTRTFLVTKSPLRDSQ 587 Query: 551 SSCYSLT--MHDISEWKQEKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLT 601 + L DI+E K+ + +L + AE+ + K +FLA VSHE+R+PL Sbjct: 588 GHVFGLVGVSKDITERKRAQRELEQLLVAEHRLRGEAERANRAKDEFLAIVSHELRSPLN 647 Query: 602 AIIGFSEVIKNQRFGPLGNPR---YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 A+ G+S+V+ GNP + A I R+ + +++DLLD S+I SGK+ L+ Sbjct: 648 ALKGWSQVLTAS-----GNPEPATVLRAAEAIKRNIDHQARLIDDLLDTSRIISGKLELN 702 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 V+L E V AI L A KRI +R A I D ++QI +N+L+NA+ F Sbjct: 703 SRRVNLVEIVHAAIDLSWDTAKAKRIELRVDTACPSLMINGDHDRLQQIVINLLANALKF 762 Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 TP GG + + VIL V D+GVG+ L F Q S R +G G+GL Sbjct: 763 TPEGGWVELRLAQ-GETSVILSVADSGVGIEAGFLPHVFDRFSQADTSMTRRHQGLGIGL 821 Query: 779 PLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 L + +V+ + G + S P G++ + P Sbjct: 822 ALVRNLVELHGGAVRVESAGPGCGSVFTVELP 853 >gi|304320353|ref|YP_003853996.1| sensor histidine kinase/response regulator [Parvularcula bermudensis HTCC2503] gi|303299255|gb|ADM08854.1| sensor histidine kinase/response regulator [Parvularcula bermudensis HTCC2503] Length = 575 Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 116/231 (50%), Gaps = 6/231 (2%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S KS FLA +SHEIRTPL I+G +E + + A I SG L+L ++ Sbjct: 186 SRAKSVFLATMSHEIRTPLNGILGMAEALAASALPEDSRSK----AETIRDSGALLLQML 241 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700 N+ LD+SKIE+GK+ + P LD A+ +L A + T ++P + D Sbjct: 242 NNSLDLSKIEAGKLEIDKAPFRLDRAIERVHALFAQQARNAGLTFTTDIDRSLPMLREGD 301 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 + + QI N++ NA+ FT SGG I +++L V+DTG+GM++ + K PF Sbjct: 302 EQRLTQILTNLIGNALKFTQSGGVTIGLHRGKGATDIVLSVKDTGIGMSDEQQAKIFMPF 361 Query: 761 GQIPNSQQIRG-EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 Q + R GTGLGL + KA+ G+ + S G+ + PL Sbjct: 362 TQAEGATTTRRFGGTGLGLSIVKALTAQMGGEVILKSVAGVGSEFSVCLPL 412 >gi|313157297|gb|EFR56722.1| PAS domain S-box protein [Alistipes sp. HGB5] Length = 743 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 79/255 (30%), Positives = 133/255 (52%), Gaps = 17/255 (6%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +DI+ KQ + +L AK+ AE+ + K+ FLA +SHEIRTPL AI+GFS+++ + Sbjct: 501 YDITALKQTEQELIAAKERAEESNKLKTAFLANMSHEIRTPLNAIVGFSQLLTTEE---- 556 Query: 619 GNPRY-IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 +P EY + + + L+L I++D+LD+S+IESG +L L EA+ +L Sbjct: 557 -DPEVRKEYNDIVSLNNGLLLQIISDVLDLSRIESGHADLVRTRFDLRTLCREAVETFRL 615 Query: 678 YANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 E+ +L +P + + + QI N + NA+ FTP G + + Sbjct: 616 QTPEEVVL---DVEKGLPSCTVCQYRQGLMQILANFIRNALKFTPKG--FVTVGFERKRD 670 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + L VRDTG+G+ EL+K + F ++ Q GTGLGL + K++ + + + Sbjct: 671 RLSLYVRDTGIGIPAEELDKIFERFYKVDTFTQ----GTGLGLSICKSIAEQMGAQIGVD 726 Query: 796 STPAKGTLIEIIFPL 810 S +G+ + P+ Sbjct: 727 SAVGEGSCFRVEMPI 741 >gi|289641928|ref|ZP_06474083.1| GAF sensor hybrid histidine kinase [Frankia symbiont of Datisca glomerata] gi|289508228|gb|EFD29172.1| GAF sensor hybrid histidine kinase [Frankia symbiont of Datisca glomerata] Length = 1215 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 80/266 (30%), Positives = 139/266 (52%), Gaps = 17/266 (6%) Query: 559 HDIS----EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 HDI E +Q + ++ + S +KS+FLA +SHE+RTPL +++ + ++ Sbjct: 748 HDIEIKNFEIEQTRQEIEERARQLALSSRYKSEFLANMSHELRTPLNSLLILARLLAQN- 806 Query: 615 FGPLGN--PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 P N P+ +EYAN I +G+ +L ++ND+LD+SK+E+GK+++H E +L + + Sbjct: 807 --PANNLSPKEVEYANVIHSAGSDLLQLINDILDLSKVEAGKIDIHLERFALSALLDDVQ 864 Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIIS 728 + EK + A ++P +++D + + Q+ N+LSNA+ FT GG +I + Sbjct: 865 GIFCPIIEEKGLRFTVEVAPDVPDALVSDQQRLLQVLRNLLSNAVKFTQLGGVELRIRVV 924 Query: 729 TTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + ++E V V DTG+G+ L++ F Q S R GTGLGL +A+ + Sbjct: 925 SDRVLDDERRPAVAFAVIDTGIGIAEENLDRLFGAFQQGDGSTSRRFGGTGLGLSIAREV 984 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810 G S +G+ + PL Sbjct: 985 AALLGGVIRAQSEFGQGSTFTLYLPL 1010 >gi|256851720|ref|ZP_05557108.1| two-component system response regulatory system histidine kinase [Lactobacillus jensenii 27-2-CHN] gi|260661562|ref|ZP_05862474.1| two-component system response regulatory system histidine kinase [Lactobacillus jensenii 115-3-CHN] gi|256615678|gb|EEU20867.1| two-component system response regulatory system histidine kinase [Lactobacillus jensenii 27-2-CHN] gi|260547619|gb|EEX23597.1| two-component system response regulatory system histidine kinase [Lactobacillus jensenii 115-3-CHN] Length = 617 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 94/386 (24%), Positives = 185/386 (47%), Gaps = 33/386 (8%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 ++ + E E +L S+L +DG+ +R G ++ N+ +D + KP T L Sbjct: 251 SQEQSESERRRLDSVLSHMTDGVIATDRHGNVIILNQMALSFLDIKEKDAVSKPITKIL- 309 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP-FSSCYSLTMHDI 561 + + + L + ++ + + G+ E L + +I+++ F S +HD+ Sbjct: 310 ----GLDDDVSAQELIGNQQEMMITVNEGTPDEMILHANFSLIRRVTGFVSGAVCVLHDV 365 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGN 620 +E Q+KN+ + + F++ VSHE+RTPLT++ + E + + + P Sbjct: 366 TE--QQKNE------------NEQRQFVSNVSHELRTPLTSLRAYIEALNDGAWKDPEIA 411 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA- 679 P+++E ++ ++NDLL +S+++ G + + E V+ ++ +S ++ + Sbjct: 412 PQFLEVTQ---EETERMIRMINDLLSLSRMDRGVVKMDLEWVNFNDFLSHVLNRFDMIVK 468 Query: 680 -------NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +K+ I+ N + D + Q+ NI++NAI ++P GG I + T + Sbjct: 469 NDEKDQTGQKKYSIKRKITNQDLWVEIDTDQMMQVIDNIMNNAIKYSPDGGVITVGLTQS 528 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 N+ +IL + D G+G+ +L K F ++ ++ GTGLGL +AK +V+A+ GK Sbjct: 529 QNQ-IILSISDQGLGIPKKDLNKIFDRFYRVDKARSREQGGTGLGLAIAKEIVEAHKGKI 587 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHPHD 818 + S KG+ I P S D Sbjct: 588 WADSQEGKGSTFYISLPFEPMSEEDD 613 >gi|261415582|ref|YP_003249265.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372038|gb|ACX74783.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326511|gb|ADL25712.1| sensor histidine kinase/response regulator [Fibrobacter succinogenes subsp. succinogenes S85] Length = 1503 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 135/257 (52%), Gaps = 20/257 (7%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF----SEVIKNQRFGPLGN 620 K+++ L A ++A S K+ FL +SH+IRTP+ AIIGF +E I N+ Sbjct: 966 KKDQEALERALQMANSASRAKTTFLNNMSHDIRTPMNAIIGFTGLAAEHIDNK------- 1018 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS--EAISLVQLY 678 + +Y + I +S +L ++ND+LD+S+IESGKMN+ P L + V + I L + Sbjct: 1019 EQVADYLSKIGQSSEHLLALINDVLDMSRIESGKMNIANRPERLSDVVHMLKGIVLSDVR 1078 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + +++ + +N I D + Q+ LN++SNAI +TP G I ++ E Sbjct: 1079 SRQQQFFVELENVHN-EMIYCDKLRLNQVLLNVVSNAIKYTPKNGLITMNVKELPAETGY 1137 Query: 739 ----LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG-EGTGLGLPLAKAMVDANMGKFY 793 V+D G+GM+ L++ PF ++ NS + G +GTGLG+ + K ++D G Sbjct: 1138 GVYEFLVKDNGIGMSEAFLKQIFDPFTRV-NSSTVSGIQGTGLGMSITKNIIDMMGGTIK 1196 Query: 794 IFSTPAKGTLIEIIFPL 810 + S GT + + F Sbjct: 1197 VSSEENFGTEVLMTFKF 1213 >gi|242278944|ref|YP_002991073.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242121838|gb|ACS79534.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 659 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 133/256 (51%), Gaps = 10/256 (3%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 + L +K+ AE S KS+FLA +SHEIRTP+ I+G +++K + +EY + Sbjct: 284 DALLKSKEQAEAASKVKSEFLANMSHEIRTPINGIMGMLQLLKTTDL----DAEQLEYVD 339 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 Y +S + + ++ D+LD++ +E+G++ L P + E + L A EK +++ Sbjct: 340 YALKSSSRLSSLLIDILDLTMVEAGQLELQIAPFEIAETIDSIRQLFGQEAREKGLVLNF 399 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGV 746 + +P + D ++Q+ +N++ NA+ FT G + + + ++ +VRDTG+ Sbjct: 400 DISPEVPETVDGDALRLQQVLVNLVGNALKFTEHGRVDVEVFLNDKRAKSLLFKVRDTGI 459 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ + +K +PF Q S + +G GLGL + K ++ G+ Y+ S KGT+ Sbjct: 460 GIADDIQDKLFEPFIQGDGSYKRSFQGAGLGLSICKRVLKVMGGEIYVSSVLGKGTVFSF 519 Query: 807 IFPL----YDTSHPHD 818 PL DTS D Sbjct: 520 TMPLVTEELDTSAEKD 535 >gi|161521238|ref|YP_001584665.1| signal transduction histidine kinase with CheB and CheR activity [Burkholderia multivorans ATCC 17616] gi|160345288|gb|ABX18373.1| signal transduction histidine kinase with CheB and CheR activity [Burkholderia multivorans ATCC 17616] Length = 1214 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 80/262 (30%), Positives = 131/262 (50%), Gaps = 4/262 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI--KNQ 613 L DI + K A+ AE+ ++ K +FLA VSHE+R PL I ++ V+ ++ Sbjct: 814 LAFQDIHQLKSALGTAQSAQLDAERANTAKDNFLALVSHELRAPLNVISSWAAVLMTASE 873 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 R P I R L ++++DLLD+S+I SG+ +L +PV AV + Sbjct: 874 RGMPTDEQMSQRAVTTILRHCQLQAELIDDLLDVSRISSGRFSLDSKPVDFAAAVRTVVE 933 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + A +K I++ TS + + D R ++Q+A N++ NA+ FTP GG++ ++ T Sbjct: 934 SHRPVAAKKEIMLATSGLQSQAVVSGDARRLQQVASNLIGNALKFTPQGGRVEVALTRL- 992 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + L V D G+G+ L + F Q S+ + G GLGL + K +V A+ G Sbjct: 993 GALIELSVADNGIGVKPELLPRLFDRFMQSDTSRTRQYGGLGLGLSIVKHLVTAHGGTVT 1052 Query: 794 IFS-TPAKGTLIEIIFPLYDTS 814 S +GT + + PL T+ Sbjct: 1053 ASSEGEGRGTRLTVRIPLLQTA 1074 >gi|312960833|ref|ZP_07775338.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens WH6] gi|311284491|gb|EFQ63067.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens WH6] Length = 1165 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 72/251 (28%), Positives = 135/251 (53%), Gaps = 7/251 (2%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN- 620 E Q + +L + ++ S +KS+FLA +SHE+RTPL + + ++++ P N Sbjct: 471 GELNQAQQELEDRAEELQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAE---NPQENL 527 Query: 621 -PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +++A I +GN +L+++ND+LDISK+E+GK+ + + S+ V + + A Sbjct: 528 SAEQVKFAESIYSAGNDLLNLINDILDISKVEAGKLEVRPDNSSVARLVDGLRGMFEPLA 587 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 ++++ + + P +L D + ++QI N+LSNAI FT G ++ +S + E + Sbjct: 588 ADRKLGFQVQVQPDAPAMLFTDRQRLEQILKNLLSNAIKFTEQG-EVSLSVSRAPGEGIA 646 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 VRD+G+G+ + + + F Q + R GTGLGL +++ + G + S P Sbjct: 647 FSVRDSGIGIAPDQQQSIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGYISVTSAP 706 Query: 799 AKGTLIEIIFP 809 KG+ ++ P Sbjct: 707 GKGSTFTLVLP 717 >gi|86147779|ref|ZP_01066086.1| probable composite two component regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator [Vibrio sp. MED222] gi|85834417|gb|EAQ52568.1| probable composite two component regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator [Vibrio sp. MED222] Length = 1430 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 97/349 (27%), Positives = 154/349 (44%), Gaps = 36/349 (10%) Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL- 538 V +L G + R P + F N R+TL K KE KL Sbjct: 696 GVEELLGLTPAQLRRSPISFFAPLNAQD--------------RRTLIKKVRSGNKEGKLS 741 Query: 539 -------------LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 L+L+ I L + + DI+E KQ++ +L+ A++ A + K Sbjct: 742 LDIGVNIDNQNRWLNLQSKISDLGDYYEWDSVLTDITELKQQQEELTQARQSAIAATEAK 801 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 S FLA +SHEIRTPL I+ E+ + G + + +S N +L IVND+L Sbjct: 802 SRFLANMSHEIRTPLGGIVSLLELSEQYEVG----YEVQKIHTTLSQSANNLLHIVNDIL 857 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSV 704 D SKIE+GK+ L ++P SLD L A+ K + + + +L D + Sbjct: 858 DFSKIEAGKLTLDYQPASLDTLTLRVTQLQARQAHAKGLQFKFWLDPELNDLVLMDDIRI 917 Query: 705 KQIALNILSNAIHFTPSGGQIIIST---THTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 Q+ N+LSNAI FT G + + +++ V D+G+G++ + +PF Sbjct: 918 GQVLNNLLSNAIKFTEYGTVGLAAKLLDLDGEQQQICFEVFDSGIGISEEHIRNLFQPFV 977 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 Q + G+GLGL ++K +++ G + S G+ I PL Sbjct: 978 QADEGTTRKYGGSGLGLTISKQLIEQMGGSLNVTSKINIGSTFSITLPL 1026 >gi|265750539|ref|ZP_06086602.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263237435|gb|EEZ22885.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 634 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 78/238 (32%), Positives = 131/238 (55%), Gaps = 10/238 (4%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK+ AE+ + K+ FLA +SHEIRTPL AI+GFS V+ + P +Y + I ++ Sbjct: 400 AKEKAEESNRLKTAFLANMSHEIRTPLNAIVGFSSVLVSDDSSP---AEKAQYCDIIQKN 456 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRTSFAN 692 +L+L ++ND+LDIS++ESGK+ +E + E A+S + + L T A+ Sbjct: 457 SDLLLHLINDILDISRMESGKIKFVWEECDVVELCQTALSTAEYGRKTSALFLFETPVAS 516 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 + I D + +KQ+ +N+LSNA FTPSG + ++++ L V DTG G+ + + Sbjct: 517 LV--IKTDAQRLKQVLINLLSNAAKFTPSGSIKLAIAIDKQHQQLELSVSDTGCGIPSDK 574 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 ++ + F ++ Q GTGLGL +++ +V+ GK ++ +G PL Sbjct: 575 SDRVFERFEKLNEYSQ----GTGLGLAISRLIVENLGGKIWVDKDYTEGARFVFTHPL 628 >gi|237716271|ref|ZP_04546752.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262407876|ref|ZP_06084424.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229443918|gb|EEO49709.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262354684|gb|EEZ03776.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 885 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 130/257 (50%), Gaps = 12/257 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E + K +L +K+ AE S KS FLA +SHEIRTPL AI+GFS +I Sbjct: 486 DITELEMIKRELQSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESDDAEER 545 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 Y N ++ + +L ++N++LD+SKIESG + F P SL E + ++ Sbjct: 546 KT----YYNIVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCRE-VHDAHIFR 600 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + + + ++ I D V Q+ N++ NA+ FT G I ++ +++ Sbjct: 601 TPQGVSLVYESSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS--ISYGYKLADNQIVF 658 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG G+ ++ + + F ++ N Q GTGLGL + K++V+ GK + S Sbjct: 659 HVTDTGTGIEPEKVGRVFERFAKLNNHAQ----GTGLGLSICKSIVERLGGKISVNSEFG 714 Query: 800 KGTLIEIIFPLYDTSHP 816 KGT P Y ++P Sbjct: 715 KGTTFTFTLP-YTIANP 730 >gi|254507093|ref|ZP_05119231.1| sensor histidine kinase/response regulator fusion protein [Vibrio parahaemolyticus 16] gi|219550088|gb|EED27075.1| sensor histidine kinase/response regulator fusion protein [Vibrio parahaemolyticus 16] Length = 566 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 80/258 (31%), Positives = 130/258 (50%), Gaps = 21/258 (8%) Query: 572 SHAKKIAEKESSHKS--DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 S+ K A E S K+ +F+A ++HE+RTPL ++G +E++ + N N Sbjct: 190 SNQKARARAEESEKATKEFVAMINHELRTPLNGLLGSAELLAETQL----NDEQSTLLNN 245 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQLYANEKRILI 686 + SG+L+ I+ND+LD SKI +G M L FE S+ + ++ + Q A EK + Sbjct: 246 LVYSGDLLRLIINDILDFSKISAGMMELIPSRFEWASVKQMLN---GIFQSKAVEKGVDF 302 Query: 687 RTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 R + IP IL D + Q+ +N++ NA+ FT G + TT ++++ + V DTG Sbjct: 303 RIKESTPIPPILIGDFERICQVMVNLVGNAVKFTRQGS--VSVTTQWKHDQLTITVEDTG 360 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ +L PF Q+ + EGTGLGL + K +V+ G ++ S G+ Sbjct: 361 IGIEQEDLSTLFDPFVQVDRTATRHFEGTGLGLAICKNLVELMRGHIHVHSVKGSGSTFT 420 Query: 806 IIFPLY------DTSHPH 817 + PL DT H Sbjct: 421 VTIPLVVGEEENDTEHAR 438 >gi|39934751|ref|NP_947027.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] gi|39648601|emb|CAE27122.1| sensor histidine kinase with a response regulator receiver domain [Rhodopseudomonas palustris CGA009] Length = 863 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 130/236 (55%), Gaps = 12/236 (5%) Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 F+A +SHEIRTP+ A+IG + + R + + I +G+ +L I++D+LD Sbjct: 335 FVAMMSHEIRTPMNAVIGLATNLLETRL----DAEQRQAVTSIHDAGDNLLQILDDILDF 390 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQ 706 SK+E+G+++L P + V +S++ A K ++IR +IP L D ++Q Sbjct: 391 SKLEAGRLSLEPIPFAPRNIVDNTLSVIGPRAIAKGLVIRLEARGDIPEALTGDAGRIRQ 450 Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR----DTGVGMTNYELEKAMKPFGQ 762 + LN++SNA+ FT + G+I+I+T S + R+R DTG+G+ +++ K F Q Sbjct: 451 VLLNLISNAVKFT-TAGEIVITTECISRDTTNARMRWIVTDTGIGIAADKIDSLFKDFVQ 509 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSHP 816 +S R G+GLGL ++K +++ GK + S P +G+ + P+ D + P Sbjct: 510 ADSSISRRFGGSGLGLAISKRLIEQMGGKIGVSSAPGRGSEFHFSLTLPIADHAAP 565 >gi|254464412|ref|ZP_05077823.1| multi-sensor hybrid histidine kinase [Rhodobacterales bacterium Y4I] gi|206685320|gb|EDZ45802.1| multi-sensor hybrid histidine kinase [Rhodobacterales bacterium Y4I] Length = 827 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 103/384 (26%), Positives = 171/384 (44%), Gaps = 17/384 (4%) Query: 445 RKMEIEVMQLCSILEA----TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R+M IE + + +EA + D I ++ +G I + N A +FGY E+ + +P Sbjct: 206 REMAIERSRAAARMEAMIASSLDAILVVGADGRIQAFNGAAESVFGYSREEAVGQPMVNL 265 Query: 501 L------EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554 + E + + T + + L+ + E + L + + + + Sbjct: 266 IVPDHLQEAHKAGMKRFSRTGETRVAGKGRLQLEARRKSGELFPVELSVSVSQSGSEMVF 325 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 + DISE + + +L A+ A K + L +SHE+RTPLT ++G ++I+ Sbjct: 326 VSFLRDISERIEVEEELRRARDDALAGERAKHNLLTVMSHEMRTPLTGVLGAIDLIEGTG 385 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 Y + SG L+L VND+L++S++ESG + LDE VS + Sbjct: 386 L----TQEQRRYLRAMRVSGELLLHHVNDVLELSRLESGADSEKLRIFDLDELVSGLVES 441 Query: 675 VQLYANEKRI--LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 Q A + I + S P + R+V+Q+ LN++ NA+ FT G + + Sbjct: 442 QQASAKGQGIDLSLHCSLGGK-PVVAGRPRAVQQVLLNLIGNALKFTREGAVSVDVMRLS 500 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 E V V DTG G+ +L++ + F + S EGTGLGL + K +VDA G Sbjct: 501 DGETVEFSVADTGQGIAPEDLDRIFEDFITLDASYGRGSEGTGLGLAITKRLVDAMGGTI 560 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHP 816 S P +G+L I L P Sbjct: 561 TCESEPGEGSLFTISLALPPAKAP 584 >gi|330503212|ref|YP_004380081.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] gi|328917498|gb|AEB58329.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] Length = 656 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 129/254 (50%), Gaps = 11/254 (4%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E +Q +L A++ +E+ + KSDFLA +SHE+RTP+ ++G ++++ N Sbjct: 264 EQQQAIAELIQAREESEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTSL----NDE 319 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 EYA S +L ++ND+LD S+IE G + L P +L E + +I + Q A ++ Sbjct: 320 QSEYAALATESTEHLLKVINDILDFSRIERGALELEAIPFNLLELLQGSIQVFQHSAQQR 379 Query: 683 RILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL- 739 + + + R + D ++QI +N++ NA+ FT G I + T ++ +L Sbjct: 380 GLQLLLDAQPGLERLEVRGDPTRIRQILVNLIGNALKFTEEG-HIRVETHWQPLDDQVLW 438 Query: 740 ---RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 VRD+G+G+ LE F Q S R GTGLGLP+A+ + + G S Sbjct: 439 FTCAVRDSGIGIDGERLEHMFDAFQQADTSISRRYGGTGLGLPIARTLAERMGGTLRAES 498 Query: 797 TPAKGTLIEIIFPL 810 KG++ + PL Sbjct: 499 QLGKGSVFTLEIPL 512 >gi|282933548|ref|ZP_06338918.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1] gi|297205338|ref|ZP_06922734.1| sensor histidine kinase [Lactobacillus jensenii JV-V16] gi|281302291|gb|EFA94523.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1] gi|297149916|gb|EFH30213.1| sensor histidine kinase [Lactobacillus jensenii JV-V16] Length = 620 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 94/386 (24%), Positives = 185/386 (47%), Gaps = 33/386 (8%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 ++ + E E +L S+L +DG+ +R G ++ N+ +D + KP T L Sbjct: 254 SQEQSESERRRLDSVLSHMTDGVIATDRHGNVIILNQMALSFLDIKEKDAVSKPITKIL- 312 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP-FSSCYSLTMHDI 561 + + + L + ++ + + G+ E L + +I+++ F S +HD+ Sbjct: 313 ----GLDDDVSAQELIGNQQEMMITVNEGTPDEMILHANFSLIRRVTGFVSGAVCVLHDV 368 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGN 620 +E Q+KN+ + + F++ VSHE+RTPLT++ + E + + + P Sbjct: 369 TE--QQKNE------------NEQRQFVSNVSHELRTPLTSLRAYIEALNDGAWKDPEIA 414 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA- 679 P+++E ++ ++NDLL +S+++ G + + E V+ ++ +S ++ + Sbjct: 415 PQFLEVTQ---EETERMIRMINDLLSLSRMDRGVVKMDLEWVNFNDFLSHVLNRFDMIVK 471 Query: 680 -------NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +K+ I+ N + D + Q+ NI++NAI ++P GG I + T + Sbjct: 472 NDEKDQTGQKKYSIKRKITNQDLWVEIDTDQMMQVIDNIMNNAIKYSPDGGVITVGLTQS 531 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 N+ +IL + D G+G+ +L K F ++ ++ GTGLGL +AK +V+A+ GK Sbjct: 532 QNQ-IILSISDQGLGIPKKDLNKIFDRFYRVDKARSREQGGTGLGLAIAKEIVEAHKGKI 590 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHPHD 818 + S KG+ I P S D Sbjct: 591 WADSQEGKGSTFYISLPFEPMSEEDD 616 >gi|222109842|ref|YP_002552106.1| histidine kinase [Acidovorax ebreus TPSY] gi|221729286|gb|ACM32106.1| histidine kinase [Acidovorax ebreus TPSY] Length = 1137 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 75/266 (28%), Positives = 141/266 (53%), Gaps = 12/266 (4%) Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 ++L + LT D E K A+ +A+ S +KS+FLA +SHE+RTPL + + Sbjct: 430 EQLQYQKQRLLTAQDALEAK--------ARDLAQA-SQYKSEFLANMSHELRTPLNSSLI 480 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 ++++ + + L + YA I +G +L+++ND+LD+SKIE+G+ ++ V++ Sbjct: 481 LAKLLADNKQQNL-TAEQVRYAQTIHNAGTDLLNLINDILDLSKIEAGQTSVEIGQVTVA 539 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724 + V+ + ++ A +K + +P I +D + + QI N+LSNA+ FT + G+ Sbjct: 540 KVVAGVMEPLRAQAQDKGLQFNAVVEPGVPAFITSDAQRLAQILKNLLSNALKFT-ARGE 598 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + + N+ + VRDTG+G+ + E+ F Q S + GTGLGL +++ + Sbjct: 599 VTLRVFAGDNDTLCFAVRDTGIGIAPDQQERIFDAFHQADGSTHRKYGGTGLGLSISRDL 658 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810 G + S P +G++ + P+ Sbjct: 659 AQLLGGSIAVQSAPGEGSVFTLTLPV 684 >gi|197118913|ref|YP_002139340.1| sensor histidine kinase lipoprotein [Geobacter bemidjiensis Bem] gi|197088273|gb|ACH39544.1| sensor histidine kinase lipoprotein, CHASE, PAS and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 829 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 141/256 (55%), Gaps = 12/256 (4%) Query: 561 ISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 ++E QE N +L+ A + ++ KS F+A +SHE+RTPL ++IG+S +I N+ G Sbjct: 567 VAERTQELNEKSAQLAAANEKLKEVDRLKSMFIASMSHELRTPLNSVIGYSSIILNEWLG 626 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL P E + R+G +L ++ND++D+SKIE+G++ +H E L + V EA ++ Sbjct: 627 PL-QPTQKENLAIVLRAGKHLLSLINDVIDVSKIEAGQIEVHNEEFDLFDLVQEAAQQLE 685 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE 735 K + + N ++LAD R + Q LN+LSNA+ +T G Q+ ++ T E Sbjct: 686 PEIRGKGLAFPVT--NIHLQLLADRRRLLQAVLNLLSNAMKYTVEGSIQLAVNFDGTWAE 743 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V D+G+G++ + + +PF ++ +S + GTGLGL L +V +G F Sbjct: 744 ---ISVADSGIGISEQDAKLVFQPFRRLDSSLRGTVSGTGLGLYLTNKLVREVLGGTITF 800 Query: 796 -STPAKGTLIEIIFPL 810 S +G+ I P+ Sbjct: 801 VSAVGQGSTFTIRIPV 816 >gi|77359512|ref|YP_339087.1| sensory box histidine kinase/response regulator [Pseudoalteromonas haloplanktis TAC125] gi|76874423|emb|CAI85644.1| putative sensory box histidine kinase/response regulator [Pseudoalteromonas haloplanktis TAC125] Length = 924 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 127/242 (52%), Gaps = 13/242 (5%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A+K S K+ FLA +SHEIRTP+ +IG ++++ L +Y + I S + Sbjct: 271 AQKASEAKTTFLATMSHEIRTPMNGVIGTIDLLRQTN---LDGSQY-RLSTIIRESAFSL 326 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696 L I++D+LD SKIE+GK+N+ P S+ + + E + ++ A + + + S A +IP Sbjct: 327 LSILDDILDFSKIEAGKLNIDPIPFSVTDTIEEVVRVLSSIAKHRDLDLNLSIAPDIPIN 386 Query: 697 ILADLRSVKQIALNILSNAIHFTPSG----GQIIIS--TTHTSNEEVILR--VRDTGVGM 748 ++ D V+QI N+ SNAI FT + GQ+ IS H + E LR V D G GM Sbjct: 387 LIGDNTRVRQILYNLCSNAIKFTSTSESHKGQVNISVEVAHNTAEHFTLRFCVTDNGKGM 446 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + +L + PF Q +S GTGLGL + K++ + +G + S G+ + Sbjct: 447 SQAQLREIFNPFIQAESSITREYGGTGLGLSICKSLTELMLGTISVNSNIGIGSEFTVEL 506 Query: 809 PL 810 P Sbjct: 507 PF 508 >gi|294646773|ref|ZP_06724396.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294807695|ref|ZP_06766488.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] gi|292637933|gb|EFF56328.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294445131|gb|EFG13805.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] gi|295084434|emb|CBK65957.1| PAS domain S-box [Bacteroides xylanisolvens XB1A] Length = 820 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 130/257 (50%), Gaps = 12/257 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E + K +L +K+ AE S KS FLA +SHEIRTPL AI+GFS +I Sbjct: 421 DITELEMIKRELQSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESDDAEER 480 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 Y N ++ + +L ++N++LD+SKIESG + F P SL E + ++ Sbjct: 481 KT----YYNIVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCRE-VHDAHIFR 535 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + + + ++ I D V Q+ N++ NA+ FT G I ++ +++ Sbjct: 536 TPQGVSLVYESSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS--ISYGYKLADNQIVF 593 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG G+ ++ + + F ++ N Q GTGLGL + K++V+ GK + S Sbjct: 594 HVTDTGTGIEPEKVGRVFERFAKLNNHAQ----GTGLGLSICKSIVERLGGKISVNSEFG 649 Query: 800 KGTLIEIIFPLYDTSHP 816 KGT P Y ++P Sbjct: 650 KGTTFTFTLP-YTIANP 665 >gi|192290273|ref|YP_001990878.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192284022|gb|ACF00403.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 863 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 130/236 (55%), Gaps = 12/236 (5%) Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 F+A +SHEIRTP+ A+IG + + R + + I +G+ +L I++D+LD Sbjct: 335 FVAMMSHEIRTPMNAVIGLATNLLETRL----DAEQRQAVTSIHDAGDNLLQILDDILDF 390 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQ 706 SK+E+G+++L P + V +S++ A K ++IR +IP L D ++Q Sbjct: 391 SKLEAGRLSLEPIPFAPRNIVDNTLSVIGPRAIAKGLVIRQEARGDIPEALTGDAGRIRQ 450 Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR----DTGVGMTNYELEKAMKPFGQ 762 + LN++SNA+ FT + G+I+I+T S + R+R DTG+G+ +++ K F Q Sbjct: 451 VLLNLISNAVKFT-TAGEIVITTECISRDTTNARMRWIVTDTGIGIAADKIDSLFKDFVQ 509 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSHP 816 +S R G+GLGL ++K +++ GK + S P +G+ + P+ D + P Sbjct: 510 ADSSISRRFGGSGLGLAISKRLIEQMGGKIGVSSAPGRGSEFHFSLTLPIADHAAP 565 >gi|109900450|ref|YP_663705.1| histidine kinase [Pseudoalteromonas atlantica T6c] gi|109702731|gb|ABG42651.1| histidine kinase [Pseudoalteromonas atlantica T6c] Length = 662 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 81/271 (29%), Positives = 141/271 (52%), Gaps = 15/271 (5%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y+L +I EK ++ K AE E+ K FLA +SHE+RTPLT+I+G++E++ + Sbjct: 123 YALARREI-----EKERVDRLK--AEAENRSKDRFLAHLSHELRTPLTSILGYTELLMDS 175 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + G E + ++ S +L L ++N++LD+SKI + K+ L+ V+LD +++ + Sbjct: 176 KIGQSAQS---ELSIVLNNSKHL-LSLLNNMLDLSKIAADKLELNLSEVNLDALIADVYA 231 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI--IISTT 730 L+ + A +K + + +P +I D +Q+ +N++SNAI FT G + Sbjct: 232 LMNIPATDKGLTLSVISDTPLPLKITTDATRFRQVLINLISNAIKFTEQGSVTLRLWCED 291 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 E + V DTG+G+ +L KPF Q+ + R G+GLGL + +V G Sbjct: 292 KPGCEFLHFSVTDTGIGIPANQLNSVFKPFEQVADVVSRRQGGSGLGLAICNELVAKMGG 351 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSH-PHDCI 820 + + ST +G+ DT PH+ + Sbjct: 352 EVSLHSTFGEGSCFTAFIQTGDTKRSPHELL 382 >gi|238764024|ref|ZP_04624979.1| Multi-sensor hybrid histidine kinase [Yersinia kristensenii ATCC 33638] gi|238697695|gb|EEP90457.1| Multi-sensor hybrid histidine kinase [Yersinia kristensenii ATCC 33638] Length = 919 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 81/255 (31%), Positives = 135/255 (52%), Gaps = 13/255 (5%) Query: 559 HDISEWKQEKNKLSHAK-KIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 +D E K ++ L+ AK K+A ++++H KS L +SHEIRTPL +G E+++N Sbjct: 359 YDTLEMKVKERTLALAKSKLAAEQANHRKSIHLTTISHEIRTPLNGTLGAVELLQNTYLT 418 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P R E A+ S +L I+N+LLD S+IESG++ L + +L + +A+ + Sbjct: 419 P-EQYRLAETASQCSHS---LLAIINNLLDFSRIESGQLTLSQDKTALLPLLDQAMLTIH 474 Query: 677 LYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K I++ T ++++P L D + +KQI +N+L N++ FT G I T + Sbjct: 475 SQVLSKSIVLSTYVSSDVPLELELDSQRIKQILINLLGNSVKFTQQGR--ISLTVERKGQ 532 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++ V DTG G+ + +K +PF Q + G+GTGLGL +A + G ++ Sbjct: 533 QLCFTVEDTGCGIDLQDQQKIFRPFIQTYD----HGQGTGLGLTIADNLAKMMGGHITLY 588 Query: 796 STPAKGTLIEIIFPL 810 S P G+ + P Sbjct: 589 SKPNSGSRFSLTLPF 603 >gi|298527820|ref|ZP_07015224.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511472|gb|EFI35374.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 375 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 116/218 (53%), Gaps = 2/218 (0%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K+ FL +H++R PL AI SE + + L + YI++ I S N +L +++ L Sbjct: 146 KNHFLGMAAHDLRNPLGAIRNLSEFLLEEARDSLSD-EYIQFLELIHTSSNFMLSLLDQL 204 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LDI++IE+GK+ L F+ L + + + ++ A +K+I IR IP + D + Sbjct: 205 LDIARIEAGKLELDFQSTDLISLIKSVVDINKILAEKKKIQIRLEHFETIPYVELDSMKI 264 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +Q+ N+LSNAI F+P G I + S E V + V D G G+ +++K +PF + Sbjct: 265 EQVMHNLLSNAIKFSPEGNLIKVH-VFLSGEHVTVAVTDKGPGIPEEDIQKLYQPFTKTS 323 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + TGLGL + ++ +MGK ++ S +GT Sbjct: 324 VKTPEGEKSTGLGLAIVHKIILGHMGKIWVESKVDQGT 361 >gi|39997412|ref|NP_953363.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39984303|gb|AAR35690.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] Length = 982 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 86/278 (30%), Positives = 151/278 (54%), Gaps = 17/278 (6%) Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 S ++ ++ S RI +K + +S+ +HD++E K+ + +L AK+ AE + KS+FLA Sbjct: 420 SVRDVEVFSSRIEVKGREY--LHSI-VHDVTERKRAEEELLLAKEQAESANRAKSEFLAN 476 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHEIRTP+ +IG + ++ G R YA + S +L +++D+LD SKIE Sbjct: 477 MSHEIRTPMNGVIGMTGLLLET--GLADEQR--RYAEIVRTSAASLLQVIDDILDFSKIE 532 Query: 652 SGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQI 707 +G++ + F+ +L + ++E+++ ANEK + +PR ++ D +KQ+ Sbjct: 533 AGRLEMETIGFDLRTLLDDLAESLA---FKANEKGLTFTCLLRPEVPRFLMGDPVRLKQV 589 Query: 708 ALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIP 764 +N+ NA+ FT G + + + + + V LR VRDTG+G+ + E + F Q Sbjct: 590 LVNLAGNALKFTHQGEISVEVGSLTKTGDSVKLRFAVRDTGIGIPPEKTELLFEKFTQAD 649 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 S + GTGLGL + K +V G+ + S P G+ Sbjct: 650 ASITRKYGGTGLGLAICKRLVQMMGGEIGVTSRPGVGS 687 >gi|37521062|ref|NP_924439.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35212058|dbj|BAC89434.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 602 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 130/248 (52%), Gaps = 14/248 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++E+N+ AE + K +FLA VSHE+RTPL +I+GF+++++ G+P + Sbjct: 365 QRERNR-------AEVANRAKDEFLATVSHELRTPLNSILGFTQLLRRH----AGDPERL 413 Query: 625 EYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 A + I+R+ + DLLD+S+I +GK+ L +PV ++ V AI ++ A K Sbjct: 414 AVALDAIERNAKAQARLTEDLLDVSRIITGKLKLTIQPVRVNALVDAAIETMRTAAEAKN 473 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 I + + + AD ++Q+ N+LSNAI FTP GG+I +S + +V + V D Sbjct: 474 IALSAIYPEAPCTLQADSNRLQQVIWNLLSNAIKFTPVGGRIRVSVERRAG-QVHIAVAD 532 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGT 802 +G+G+ L F Q +S G GLGL + + +V+ + G S P +G Sbjct: 533 SGMGIAAEFLPFVFDRFRQADSSSTRTFGGLGLGLAIVRHLVELHGGSVEAHSAGPNQGA 592 Query: 803 LIEIIFPL 810 + PL Sbjct: 593 TFVVSLPL 600 >gi|83858886|ref|ZP_00952408.1| sensor histidine kinase/response regulator [Oceanicaulis alexandrii HTCC2633] gi|83853709|gb|EAP91561.1| sensor histidine kinase/response regulator [Oceanicaulis alexandrii HTCC2633] Length = 570 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 9/229 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTPL ++G + V+ + + R + I SG+ +L +ND+ Sbjct: 184 KSQFLANMSHEIRTPLNGVLGMTAVLALSKL----DERQRKAVEVIRMSGDHLLSTLNDI 239 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP----RILAD 700 LD++KI++G+M++ L + + +L A + + + + R+ D Sbjct: 240 LDLAKIDAGQMDVETVEFVLGDVAEQIEALYAPQAEKAGLSFSLRYEQGVSAHSLRV-GD 298 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 + QI N++SNA+ FT GG + EE+ILRVRDTG GMT +LE+ PF Sbjct: 299 PTRLSQIVHNLVSNALKFTRKGGVRLSFAQDEDTEELILRVRDTGCGMTVDQLERVFMPF 358 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q S GTGLGL + K +++ G+ + S P GTL + P Sbjct: 359 TQADASTSREYGGTGLGLSIVKRLLEVMKGRIDVESEPDVGTLFTVYLP 407 >gi|300023279|ref|YP_003755890.1| integral membrane sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC 51888] gi|299525100|gb|ADJ23569.1| integral membrane sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC 51888] Length = 614 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 84/271 (30%), Positives = 143/271 (52%), Gaps = 17/271 (6%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 +H + + + + + A++ AE+ +S KS+F A +SHEIRTPL +IIG++ ++ ++ Sbjct: 204 LHALDQIRVSEAEAKMAREEAERATSAKSEFFATMSHEIRTPLNSIIGYTSLVLARQ--- 260 Query: 618 LGNPRYIEYAN---YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 G R E N + +G +L IVND+LD S IE+G++ V+L + ++L Sbjct: 261 -GLSR--EDTNDLSIVRDAGKALLAIVNDILDFSAIEAGRLKFIKSSVTLPPLIEGCVAL 317 Query: 675 VQLYANEKRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 EK ++IR+ ++ + AD ++Q+ LN+++NA+ FT S G +++ Sbjct: 318 FFAEGREKGLVIRSEIDPDLHDLTFTADAHRLRQVLLNLVNNAVKFT-SEGSVVVGAKIL 376 Query: 733 SNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 EE V VRDTG G+ + + F Q+ N + RG G+GLGL + +++V AN Sbjct: 377 DREENSANVRFFVRDTGPGIRADLIPNLFQRFSQLDNGRDRRG-GSGLGLAICRSIVQAN 435 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 GK I S +G+ PL + D Sbjct: 436 GGKIDIESHEGEGSTFWFEVPLEIAARDRDA 466 >gi|189352589|ref|YP_001948216.1| signal transduction histidine kinase [Burkholderia multivorans ATCC 17616] gi|189336611|dbj|BAG45680.1| signal transduction histidine kinase [Burkholderia multivorans ATCC 17616] Length = 1218 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 80/262 (30%), Positives = 131/262 (50%), Gaps = 4/262 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI--KNQ 613 L DI + K A+ AE+ ++ K +FLA VSHE+R PL I ++ V+ ++ Sbjct: 818 LAFQDIHQLKSALGTAQSAQLDAERANTAKDNFLALVSHELRAPLNVISSWAAVLMTASE 877 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 R P I R L ++++DLLD+S+I SG+ +L +PV AV + Sbjct: 878 RGMPTDEQMSQRAVTTILRHCQLQAELIDDLLDVSRISSGRFSLDSKPVDFAAAVRTVVE 937 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + A +K I++ TS + + D R ++Q+A N++ NA+ FTP GG++ ++ T Sbjct: 938 SHRPVAAKKEIMLATSGLQSQAVVSGDARRLQQVASNLIGNALKFTPQGGRVEVALTRL- 996 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + L V D G+G+ L + F Q S+ + G GLGL + K +V A+ G Sbjct: 997 GALIELSVADNGIGVKPELLPRLFDRFMQSDTSRTRQYGGLGLGLSIVKHLVTAHGGTVT 1056 Query: 794 IFS-TPAKGTLIEIIFPLYDTS 814 S +GT + + PL T+ Sbjct: 1057 ASSEGEGRGTRLTVRIPLLQTA 1078 >gi|310644836|ref|YP_003949595.1| sensory box histidine kinase yycg [Paenibacillus polymyxa SC2] gi|309249787|gb|ADO59354.1| Sensory box histidine kinase YycG [Paenibacillus polymyxa SC2] Length = 609 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 118/478 (24%), Positives = 209/478 (43%), Gaps = 46/478 (9%) Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 ++++ K V + IA ++ L D K NN ML T + HTI + Sbjct: 153 VISQGKIVGAVYIAASMAELYDTMK-RINNVFLSGMLIALALTAVLGVVLAHTITHPIK- 210 Query: 410 SLAMTFIPFEKA-NQFPENMPQNGIEPEDVDTRINK-------------RKMEIEVMQLC 455 MT E A +F + MP G ED R++ + E E +L Sbjct: 211 --VMTRHATEVAEGKFDQQMPVFG---EDEIGRLSVAFNYMTGRLREALSQNEEEKEKLS 265 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 SIL SDG+ + G ++ NR S + G N + ++ Sbjct: 266 SILTNMSDGVVATDDHGRVILVNRRASAMLGV----------------NENEMTGRHIAV 309 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 +L +D +T E + GS+ LL L + P + T E+ ++ + Sbjct: 310 LLGIDPEET-EALYSGSSAS-TLLQLEPAGQDEPIVIRVTFTPIHRREFGI-TGTIAVLQ 366 Query: 576 KIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDR 632 + E+E + + +F+A VSHE+RTPLT I ++E + + G + P+ E + I Sbjct: 367 DVTEQEEMETTRREFVANVSHELRTPLTTIRSYAEALDD---GAMAEPQLAERFVGVIRN 423 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 ++ +V DLL +S+++S + L +P + E + E E I Sbjct: 424 ETERMIRLVTDLLHLSRLDSNEAPLRMQPADVMEMLDEVADRFSFQMKENHIRSGMFVEQ 483 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 I +++ D + Q+ N++SNA+ +TP GG I I + + + V+DTG+G+ + Sbjct: 484 GIGKVVIDRDQIDQVLDNLMSNALKYTPEGGSIRIEARRNNEGMLAISVQDTGIGIPKKD 543 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 L++ + F ++ ++ GTGLGL +A+ +V A+ G+ ++ S +GT P+ Sbjct: 544 LDRIFERFYRVDKARSRNMGGTGLGLSIAREIVKAHGGQIFLESEYGQGTCTTFTLPM 601 >gi|290473792|ref|YP_003466666.1| hybrid sensory histidine kinase in two-component regulatory system with RcsB and YojN, regulates capsule biosynthesis, cell division genes, OsmC expression [Xenorhabdus bovienii SS-2004] gi|289173099|emb|CBJ79872.1| hybrid sensory histidine kinase in two-component regulatory system with RcsB and YojN, regulates capsule biosynthesis, cell division genes, OsmC expression [Xenorhabdus bovienii SS-2004] Length = 921 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 84/258 (32%), Positives = 136/258 (52%), Gaps = 9/258 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS + + L AE+ + KS FLA VSHE+RTPL IIG E++++ P Sbjct: 422 DISTRVKMEQSLQEMASAAEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSHTL-PSE 480 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + R + N + +L+L I++D+LD SKIES ++ + + S E V IS Sbjct: 481 SARLLSAMN---NASSLLLKIISDILDFSKIESKQLKIDSKKFSCKEIVLHVISNYLPLI 537 Query: 680 NEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEV 737 +K + + +IP I+ D ++QI N+L+NAI FT +G +I IS H+ + Sbjct: 538 VKKELGLYCYIEPDIPDIINNDPVRLQQIISNLLNNAIKFTETGSVVITISIKHSY---L 594 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + ++DTGVG+ + + +PF QI ++Q +GTGLGL + + +++ G S Sbjct: 595 YISIKDTGVGIEDKLQTQLFEPFFQINANKQTFSQGTGLGLAICEKLINLMDGDIEFISQ 654 Query: 798 PAKGTLIEIIFPLYDTSH 815 G++ I PLY + Sbjct: 655 QYIGSIFSIRLPLYGAKY 672 >gi|298506349|gb|ADI85072.1| sensor histidine kinase response regulator, PAS domain-containing, putative heme-binding site [Geobacter sulfurreducens KN400] Length = 982 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 86/278 (30%), Positives = 151/278 (54%), Gaps = 17/278 (6%) Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 S ++ ++ S RI +K + +S+ +HD++E K+ + +L AK+ AE + KS+FLA Sbjct: 420 SVRDVEVFSSRIEVKGREY--LHSI-VHDVTERKRAEEELLLAKEQAESANRAKSEFLAN 476 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHEIRTP+ +IG + ++ G R YA + S +L +++D+LD SKIE Sbjct: 477 MSHEIRTPMNGVIGMTGLLLET--GLADEQR--RYAEIVRTSAASLLQVIDDILDFSKIE 532 Query: 652 SGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQI 707 +G++ + F+ +L + ++E+++ ANEK + +PR ++ D +KQ+ Sbjct: 533 AGRLEMETIGFDLRTLLDDLAESLA---FKANEKGLTFTCLLRPEVPRFLMGDPVRLKQV 589 Query: 708 ALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIP 764 +N+ NA+ FT G + + + + + V LR VRDTG+G+ + E + F Q Sbjct: 590 LVNLAGNALKFTHQGEISVEVGSLTKTGDSVKLRFAVRDTGIGIPPEKTELLFEKFTQAD 649 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 S + GTGLGL + K +V G+ + S P G+ Sbjct: 650 ASITRKYGGTGLGLAICKRLVQMMGGEIGVTSRPGVGS 687 >gi|254413294|ref|ZP_05027065.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196179914|gb|EDX74907.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 498 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 85/269 (31%), Positives = 141/269 (52%), Gaps = 20/269 (7%) Query: 554 YSLTMHDISEWKQ---EKNKLSHAKKIAEKESSH----KSDFLARVSHEIRTPLTAIIGF 606 Y + D+++ KQ E+ +L +++ A E+ K +FLA +SHE+RTPL AI+G+ Sbjct: 223 YEGAIEDVTQRKQAETERTQLLKSEQAARAEAETANRLKDEFLATLSHELRTPLNAILGW 282 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 + +++ ++ P R +E I+R+ +++DLLD+S+I G + L PV L + Sbjct: 283 AGLLRRKQLSPDKVQRALEV---IERNAKSQAQLIDDLLDVSRIIRGNLRLTVIPVDLQQ 339 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 ++ AI +Q A+ K I I + + I D ++QI N+LSNAI FTP+ GQ+ Sbjct: 340 IINAAIDTLQPAADAKSIQIDSFLEPSQTVIKGDSDRLQQIVWNLLSNAIKFTPTHGQVK 399 Query: 727 ISTTHTSNEEVILRVRDTGVGMT----NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 I N V +RV+DTG G++ Y ++ + G I S G GLGL + + Sbjct: 400 IYLEWLEN-AVQIRVQDTGKGVSVDIAPYIFDRFRQAEGSITRSH----GGLGLGLAIVR 454 Query: 783 AMVDANMGKFYIFS-TPAKGTLIEIIFPL 810 +V+ + G + S KG + PL Sbjct: 455 HLVELHGGTVWCESDGDGKGATFIVELPL 483 >gi|170077996|ref|YP_001734634.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] gi|169885665|gb|ACA99378.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] Length = 1019 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 86/269 (31%), Positives = 140/269 (52%), Gaps = 19/269 (7%) Query: 548 LPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 LP +TM D+++ K ++ L AKK AE+ + KS FLA +SHE+RTPL I+G+ Sbjct: 592 LPDGRKLQITMAMDVTDRKADELALQAAKKQAEEANRAKSLFLANMSHELRTPLNGILGY 651 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 ++++ F + + I++ G +L ++ D+LD SKIE+ ++ L V Sbjct: 652 AQILM---FDESLSAEQKSSLSIIEQCGQHLLRLIADVLDFSKIEAQRLELIPTAVQFHY 708 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI 725 + + I Q+ A EK++L+ +IP +L D + ++Q+ LN+L NAI FT G + Sbjct: 709 FILDIIQTCQIKATEKQLLLNYDIDPDIPDYLLVDDQRLRQVLLNLLGNAIKFTHQGSVV 768 Query: 726 I------------ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 + S H + V VRDTG G+ +K PF QI + + R G Sbjct: 769 LDVQLSQPPQTPPKSPKHHWH-RVHFAVRDTGCGIDPENHQKIFLPFEQIGDRRS-RPHG 826 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TGLGL +++ +V G+ + S P KG+ Sbjct: 827 TGLGLAISQKLVAMMGGELQLTSYPNKGS 855 >gi|323699566|ref|ZP_08111478.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323459498|gb|EGB15363.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 953 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 130/245 (53%), Gaps = 15/245 (6%) Query: 569 NKLSHAKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +L A + AE+ SS KS FLA +SHEIRTP++ I+G +E++ Sbjct: 424 RRLVEANRSAEEASSAALEANMAKSMFLANMSHEIRTPISGILGMAEMMVTTGL----TE 479 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 E+ + I +G +L I+ND+LDISKIE+G+M L + A+ ++ A Sbjct: 480 EQREHMDMIRDAGKSLLHIINDILDISKIEAGRMELKPRDFTFRSALETSVRSFGPQAEL 539 Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEEVIL 739 ++ R A+++P R+ D + Q+ N++ NA+ FTP G ++I+ V L Sbjct: 540 NGLVFRHDVADDVPARLNGDPDRLGQVLWNLIGNAMKFTPRGLVELIVEVVARKEGRVCL 599 Query: 740 --RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 +VRDTGVG+ +L+ F Q +S + + +GTGLGL +++ +V+ G+ + S Sbjct: 600 QFKVRDTGVGIPEDKLDAVFDSFTQADSSLRKKHQGTGLGLTISRQLVNMMGGEIGVESA 659 Query: 798 PAKGT 802 KG+ Sbjct: 660 VGKGS 664 >gi|262382051|ref|ZP_06075189.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262297228|gb|EEY85158.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 793 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 81/274 (29%), Positives = 139/274 (50%), Gaps = 15/274 (5%) Query: 549 PFSSCYSLTMHDISEWKQEKNKLS-------HAKKIAEKESSHKSDFLARVSHEIRTPLT 601 P + + DI+E ++ + KL A K AE+ + KS+FLAR+SH+IRTP+ Sbjct: 238 PIYLIVYINITDITEQRELQKKLEKQSKQLKEALKSAEQANQAKSNFLARMSHDIRTPMN 297 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 AI+G + + K + R ++ I+ + L+L ++N++LD+SKIESG++ L + Sbjct: 298 AIMGMATIAKAH---VDEHERILDCMEKINGASKLLLSLINEVLDMSKIESGRLILSEDE 354 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTP 720 ++ E + + + ++Q K+ + N + D + +KQ+ +NILSNAI +TP Sbjct: 355 FNVGELLQDLVVMMQPEIKNKQQTLNIHVKNLRHENVKGDTQRIKQVLMNILSNAIKYTP 414 Query: 721 SGGQIIISTT----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 G+I I H D G GM L+K +PF + + + R +GTGL Sbjct: 415 ENGRITIEIYEKDPHNGIGNYQFVFEDNGRGMKPEFLDKIFEPFERASDDEIKRIQGTGL 474 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 G+ ++ ++ G + S KG+ I PL Sbjct: 475 GMSISHKIIQMMGGDIKVESEYGKGSRFTIDMPL 508 >gi|239909020|ref|YP_002955762.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798887|dbj|BAH77876.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1199 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 79/260 (30%), Positives = 125/260 (48%), Gaps = 12/260 (4%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ + L AK+ A++ + KS FLA +SHEIRTP+ AI+G ++V P Sbjct: 658 ERRRNLDALRAAKEEADRANQAKSRFLASMSHEIRTPMNAILGLTDVTLRTEL----TPE 713 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +Y + S +L I+ND+LD SKIE+ +M L L E + + + A K Sbjct: 714 QRDYLETVQDSARHLLGILNDILDFSKIEARQMELEVVDYDLHELARSVVKTLGVSARTK 773 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----E 736 + + +PR + D V+QI +N++ NA+ FT +GG + + H Sbjct: 774 GLWLSLDITPGVPRHVRGDPGKVRQILVNLVGNAVKFTAAGG-VSLRLAHAEAHPDTPPH 832 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + L V DTG+G+ L + F Q NS R GTGLGL +++ M G + S Sbjct: 833 LELAVADTGIGIEPSLLSAIFESFRQADNSTARRYGGTGLGLAISREMAQLMGGDITVES 892 Query: 797 TPAKGTLIEIIFPLYDTSHP 816 P G+ + P ++ P Sbjct: 893 VPGNGSRFVLSIP-FEAGRP 911 >gi|254479591|ref|ZP_05092901.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Carboxydibrachium pacificum DSM 12653] gi|214034465|gb|EEB75229.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Carboxydibrachium pacificum DSM 12653] Length = 571 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 99/363 (27%), Positives = 172/363 (47%), Gaps = 51/363 (14%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLF------GYPVEDILRKPFTVFLEQNTP 506 ++ +I++ DG+ + +G I+ N A K+ G PVE++L P E P Sbjct: 249 KIEAIIKFMKDGVVAADAKGNIIHYNEAAEKMLNKKLSLGMPVEEVL--PLK---EAENP 303 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566 M + D R + I S K + Y MHDI+E Sbjct: 304 IPM--------TCDNRVLM--INAASVKINNQVE------------GYVYVMHDITE--- 338 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 ++KL +K +F+A VSHE+RTPL I + E + + + ++ Sbjct: 339 -QHKLDQMRK----------EFVANVSHELRTPLATIKSYVETL---LYNDVDTEYSKKF 384 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I+ + + +V DLL +SK++S + +L EP +E V ++ + + A +K + Sbjct: 385 LRIIETETDRMTRLVKDLLLLSKMDSEENSLKLEPCDFNEIVKNVVNSLSIEATKKGHNV 444 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 + + + ++ D V+Q+A+NI++NAI +TP GG I IST + E V V+D G+ Sbjct: 445 ILNLSETLQKVNVDKDKVEQMAMNIINNAIKYTPEGGVIEISTAY-DEEGVTFTVKDNGI 503 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + + F ++ ++ GTGLGL + K +V+ + GK I S KGT++ + Sbjct: 504 GIPKEDLPRIFERFYRVDKARSRELGGTGLGLSIVKQIVELHKGKVKIESELGKGTVVTV 563 Query: 807 IFP 809 P Sbjct: 564 QLP 566 >gi|32474805|ref|NP_867799.1| histidine kinase (PhoR1) [Rhodopirellula baltica SH 1] gi|32445345|emb|CAD75346.1| putative histidine kinase (PhoR1) [Rhodopirellula baltica SH 1] Length = 445 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 95/374 (25%), Positives = 178/374 (47%), Gaps = 28/374 (7%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQ 503 R + E Q S L SDG+ ++ ++ +L N + +L G D +L + FT + Sbjct: 90 RCLHAETRQNASALLQLSDGVIVLAKDFSVLLINPSAVRLLGLKKRDALLGRCFTELVR- 148 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDI 561 + L I S Q ++ T+ + + LR+ + + L++ D Sbjct: 149 -----VPQLLASIRSAVREQQPQEFTVEVHDQGVMRPLRVRVDLIDTGEEPNLQLSLRDE 203 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E A+++ E + +F+A VSHE++TPL AI G++E ++ +P Sbjct: 204 TE----------ARRVEEM----RREFIANVSHELKTPLAAIKGYAETVE---LAVQDDP 246 Query: 622 -RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + + I + +V++++ +++ ++G NLH VSL E VS+AI + A Sbjct: 247 DAALHFMQQIMSQCLRLERLVHEMMQLARAQAGPANLHLSSVSLSEIVSDAIRTYEPVAA 306 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + + + +I+AD + IA N++ NA+ +TPSGG+I +S +++ ++ Sbjct: 307 ANGLDLIQEVPSGEAKIIADREATLTIANNLIGNALRYTPSGGEIRVSIVEQTDQWALV- 365 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTGVG+ E ++ + F + +++ GTGLGL + K + A G + STP + Sbjct: 366 VEDTGVGIPYSEQQRIFERFYRGSRNEESSTSGTGLGLAIVKHLTQAQQGDVSVTSTPGE 425 Query: 801 GTLIEIIFPLYDTS 814 G+ + P S Sbjct: 426 GSRFCVCLPAVQAS 439 >gi|88861266|ref|ZP_01135898.1| hypothetical protein PTD2_09494 [Pseudoalteromonas tunicata D2] gi|88816747|gb|EAR26570.1| hypothetical protein PTD2_09494 [Pseudoalteromonas tunicata D2] Length = 896 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 125/228 (54%), Gaps = 7/228 (3%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI- 624 ++ KL K+ ++K + KS+FLA +SHEIRTP+ I G ++ Q + R + Sbjct: 513 KQTEKLRLEKQKSDKANKIKSEFLANMSHEIRTPINGIKGLHYLVLQQT-----DMRKVK 567 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EY + + + +++L ++ND+LD SKIE+GK+ L + V S+ +LV+ N K I Sbjct: 568 EYIHQAENAVDVLLKVLNDILDFSKIEAGKLQLEYSEVYFTALFSQLETLVRTELNNKDI 627 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + + P + D +KQ+ LN+L+NAI FT G+I ++ N+++ V+D Sbjct: 628 TLLIHYPKISPLSMFTDKIRLKQVLLNLLNNAIKFTEPDGKIELTMVQLDNKQLRFSVKD 687 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 G+G+ + ++ F Q NS + GTGLGL + K +V+ GK Sbjct: 688 NGIGIADLAQKQLFDAFTQADNSTSRKYGGTGLGLSICKHLVELMGGK 735 >gi|308271995|emb|CBX28603.1| hypothetical protein N47_G39270 [uncultured Desulfobacterium sp.] Length = 491 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 89/369 (24%), Positives = 183/369 (49%), Gaps = 34/369 (9%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L +++ SDG+ N E ++ N A ++ G E ++ F+ + + Sbjct: 143 RLRTLVNRISDGVMCTNHENRVVLANPAFLRMIGCSAESVIGSSTDEFI---NIARIREI 199 Query: 513 LTEILSLDLRQTLE-----KITLGSTKEEKLLSLRIIIKKLPFSSCYS------LTMHDI 561 + E L+++ + LE + S EE +L++R PF +HDI Sbjct: 200 IKETLNVNDSRALELTEEIPVNRHSRSEEIILNVRCT----PFRDRTGRNIGVITVLHDI 255 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 + K K KS+F++ VSHEIR+P+ +++ +VI + G L Sbjct: 256 TALK--------------KMDRMKSEFVSTVSHEIRSPMNSVLMQIQVILDGLAGELTEK 301 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + + NL + +LLD+++IESG + L EPV++ + + + ++ A Sbjct: 302 QRDILTRAYRKVENLA-QMTTELLDLARIESGLITLEREPVAMADVIRDQVAFYLPLAAS 360 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 I + + +P +LA+ R+++++ N+++NAI ++P GG+I +S + +N+ + +RV Sbjct: 361 ASIGMDIDISQELPPVLANRRNMEEVLSNLITNAIKYSPGGGRITVSAS-IANDYLHIRV 419 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +DTG+G++ + + + F ++ + + GTGLGL + K++++++ G+ I S +G Sbjct: 420 KDTGMGISAEDQHRIFERFYRVKDKKTRYINGTGLGLVIVKSILESHQGRIKIESQEGEG 479 Query: 802 TLIEIIFPL 810 + P+ Sbjct: 480 STFSFFLPI 488 >gi|239625343|ref|ZP_04668374.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519573|gb|EEQ59439.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 946 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 81/247 (32%), Positives = 131/247 (53%), Gaps = 12/247 (4%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE +S K +FL+R+SHEIRTP+ AI+G + + + P R I S + Sbjct: 563 AEAQSRAKGEFLSRMSHEIRTPMNAIMGLANLTCMEERLP---ERVETNLKKILSSSQYL 619 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ND+LD+S+IE+GKM + E +L +S+ +++ A K IL I Sbjct: 620 LSLINDILDMSRIENGKMEIMDESFNLRHLLSDLEGMMRSQAESKGILFTVDLGIIHSDI 679 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV----ILRVRDTGVGMTNYEL 753 D ++Q+ +N+LSNA+ FTP GQ+ + T ++E + V+D G+G+ Sbjct: 680 QGDPVRLRQVLVNLLSNAVKFTPENGQVKLLVQETESDETKAAFLFSVKDNGIGIEEEYQ 739 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT--LIEIIFPLY 811 +K F QI S + GTGLGLP++ +V+A G+ + S+P KG ++F L Sbjct: 740 KKIFDSFEQI-GSSSAKSAGTGLGLPISSNIVNAMGGELKVRSSPHKGAEFYFHVVFQL- 797 Query: 812 DTSHPHD 818 ++ P D Sbjct: 798 -SASPED 803 >gi|220909777|ref|YP_002485088.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219866388|gb|ACL46727.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1548 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 122/238 (51%), Gaps = 16/238 (6%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +FLA +SHE+R+PL I+G+S++++N+ F + + I+R+ L + +++DL Sbjct: 1165 KDEFLAILSHELRSPLNPILGWSQLLQNRPFDAATTQQAL---TTIERNARLQIQLIDDL 1221 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+++I GK+N+ PV L + AI V+ A K I + A P + D + Sbjct: 1222 LDVARILRGKLNMETSPVDLVAVIEAAIDTVKTAALAKSIHLELDLAQIGP-VCGDATRL 1280 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----------VILRVRDTGVGMTNYEL 753 +QI N+LSNAI FTP GG++ + E L V DTG G++ L Sbjct: 1281 QQIVWNLLSNAIKFTPQGGRVEVRLGEVEGEAGTDQTVPSPHFAKLTVTDTGKGISPDFL 1340 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPL 810 + F Q S + G GLGL + +++V+A+ G + S +G + FPL Sbjct: 1341 PHIFESFRQEDASTTRKYGGLGLGLAIVRSLVEAHGGTIWADSAGEGQGATFTVCFPL 1398 >gi|78048721|ref|YP_364896.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037151|emb|CAJ24896.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 1194 Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 127/247 (51%), Gaps = 20/247 (8%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI------KNQRFGPLGNPRYIEY 626 H +++AE+ S K+ FLA + HE+RTP+T ++G SE++ QR Y Sbjct: 812 HKQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTTQDATQR----------SY 861 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--RI 684 I R+G +L +VND LD+++IESG++ L F+P S+ + V+E +L+ A E+ R Sbjct: 862 TESIRRAGAHLLRLVNDALDLARIESGRLELDFQPFSVRQLVAEVEALMAPLAQERGLRF 921 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + +I D ++QI LN+L+NAI FT G + TT S + + V DT Sbjct: 922 SLEIGLLGDI-TASGDSTRIRQILLNLLNNAIKFTERGVVALKLTTLGSYQGLRFEVADT 980 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 G G+ + + + F Q ++ R G+GLGL + + + A G + S GT Sbjct: 981 GPGINAEQKARLFQRFEQGDGAKTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTR 1040 Query: 804 IEIIFPL 810 + PL Sbjct: 1041 FVVDLPL 1047 >gi|192288750|ref|YP_001989355.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192282499|gb|ACE98879.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 636 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 77/257 (29%), Positives = 125/257 (48%), Gaps = 5/257 (1%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+ + + L A++ A+ + KS LA SHEIRTPL IIG S ++ + PL Sbjct: 98 DLQPNQSKTRALIAARESADAANHAKSRLLAMASHEIRTPLNGIIGMSRLLLDT---PL- 153 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + YA + SG +L + ++LLD ++IE+GK+ L P L + + I L+ A Sbjct: 154 SAEQATYAKAVKTSGEALLALTDELLDYARIEAGKIELDCRPFVLSSLIEDIIELLAPRA 213 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + + I +P ++ D ++Q+ LN+ NAI FT +GG +I ++ + Sbjct: 214 QARGLEIAADIDERLPVSLIGDAARLRQVLLNLCGNAIKFTETGGVALIVERGDQSDGLR 273 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + VRDTG+G+ + F Q GTGLGL ++ +V G+ + S P Sbjct: 274 IIVRDTGIGIAPDAQARIFHEFEQADAGIARNFGGTGLGLSISDRIVSVMGGRIALESKP 333 Query: 799 AKGTLIEIIFPLYDTSH 815 +G+ I PL H Sbjct: 334 GEGSTFTITLPLSAADH 350 >gi|160885058|ref|ZP_02066061.1| hypothetical protein BACOVA_03055 [Bacteroides ovatus ATCC 8483] gi|156109408|gb|EDO11153.1| hypothetical protein BACOVA_03055 [Bacteroides ovatus ATCC 8483] Length = 570 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 83/253 (32%), Positives = 138/253 (54%), Gaps = 15/253 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ KQ + +L AK+ AE+ KS FLA +SHEIRTPL AI+GFS ++ L Sbjct: 325 DITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDEAEL- 383 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 RY+ Y + + + L+L++++D+LDISKIE+G ++L V + + E I+ ++ Sbjct: 384 --RYV-YMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIA---TFS 437 Query: 680 NEKR-ILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 ++KR + F N P+I+ AD + Q+ N L+NA+ FT + G I +S + + Sbjct: 438 HKKRDTAVELRFDENSPQIVIDADKNRIMQVLSNFLTNALKFT-TKGSITLSYSLEDESQ 496 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V V DTG G+ + + + F ++ + Q G GLGL + +++V+ GK + S Sbjct: 497 VRFCVTDTGKGIPDEQKHEIFNRFVKLDSFVQ----GAGLGLSICQSLVNRMGGKIGVES 552 Query: 797 TPAKGTLIEIIFP 809 +G+ P Sbjct: 553 REGEGSCFWFTHP 565 >gi|241664592|ref|YP_002982952.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D] gi|240866619|gb|ACS64280.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D] Length = 1436 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 74/259 (28%), Positives = 132/259 (50%), Gaps = 10/259 (3%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D++ +++ + L AK AE K FLA +SHEIRTP+ ++G E+++ + Sbjct: 806 LSDVTTEREQADALEAAKNAAESALHAKDRFLAMMSHEIRTPMNGVLGLVELLQQTKL-- 863 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + + + SG +L I++D+LD +KIE+G++++ L + L+ Sbjct: 864 --EGEQKQMVSLVQDSGRALLHILDDILDYAKIEAGRLDISPTATDLRAVFDGTVGLLAS 921 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE 735 A+EK + + A ++P + D ++QI N+LSNAI FT +G ++ T+ +++ Sbjct: 922 RAHEKSLTVHVDVAADVPASVSVDSIRLRQILFNLLSNAIKFTDTGSVRLSAQCTYAADD 981 Query: 736 EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 L V DTG+G++ PF Q S R GTGLGL +++ + GK Sbjct: 982 TAHLAICVSDTGIGISAEVQATLFAPFVQAERSTTRRYGGTGLGLAISRQLAGLMGGKLV 1041 Query: 794 IFSTPAKGTLI--EIIFPL 810 + S +GT + E+ P+ Sbjct: 1042 MESAQGQGTAVTLELTVPM 1060 >gi|284038022|ref|YP_003387952.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283817315|gb|ADB39153.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 939 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 103/371 (27%), Positives = 184/371 (49%), Gaps = 33/371 (8%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL--EQNTPSVMNHYLT 514 I+E + G+ ++ E I+ TN++ + GY ++++ + T L QN ++ Sbjct: 314 IIENMNLGLIEVDLEERIVYTNQSFCAMSGYEPDELIGQVATDILLKGQNI-----QFMK 368 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMH-DISEWKQEK 568 E LR ++ + S K ++ ++ ++ P S S +H DI++ KQ + Sbjct: 369 EKNESRLRGNVDAYEV-SIKNKRGDAMWWLVSGAPLYSQSGQVIGSTGIHLDITKQKQLE 427 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI------KNQRFGPLGNPR 622 ++L AK+ AE + K FLA +SHEIRTP+ AI+ + I ++Q+F Sbjct: 428 SELRVAKQEAEHSARVKELFLANMSHEIRTPMNAILNLGQQITKTSLTEHQQF------- 480 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + I+ + + +L I+ND+LD SKIE+G+++L L + + +A+ ++ A +K Sbjct: 481 ---FIGMINTAASNLLVIINDILDFSKIEAGELSLEHINFDLADLIGQAVQVMTHDAEKK 537 Query: 683 RILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEVIL 739 ++I T + + P +L D + QI LN++ N++ FT +G I + N+ + L Sbjct: 538 GLVISTEIGSGLPPTLLGDPFRINQILLNLIGNSVKFTNAGSVHIQCNSKKVAGNQLITL 597 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ L F Q S R G+GLG+ + K +VD G + S Sbjct: 598 SVTDTGIGIAPEFLSNLFTKFTQEDGSIGRRYGGSGLGMSITKQLVDLMGGTIDVKSEKN 657 Query: 800 KGTLIEIIFPL 810 KGT + + L Sbjct: 658 KGTTVTVKLSL 668 >gi|126659849|ref|ZP_01730975.1| Histidine Kinase [Cyanothece sp. CCY0110] gi|126618906|gb|EAZ89649.1| Histidine Kinase [Cyanothece sp. CCY0110] Length = 393 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 88/331 (26%), Positives = 170/331 (51%), Gaps = 25/331 (7%) Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 GY V +I+R+ S++ + +L DL L + EE L + +I Sbjct: 81 GYDVAEIVREY----------SLLRTVIISVLKSDL--------LSGSPEEILSMIEVID 122 Query: 546 KKLPFSSCYSLTMH---DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + C+SL + + E +Q + +L + E+ + + + ++ ++HE++TPL + Sbjct: 123 SVIDQVICWSLDSYIEQRLEELEQVRTQLLLTNEELERLIATQKEDISELAHELKTPLNS 182 Query: 603 IIGFSEVIKNQRFGPLGNPRY---IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 IIGFS +++ Q+ +P +E + +G +L ++N++L+IS+ E+GK++L+ Sbjct: 183 IIGFSRLLQQQQQQANQDPDTSLNLELTQKVINNGRQLLRLINNVLEISRYEAGKISLNL 242 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 EP +L V + +++ A +K + IR F +I+ D ++QI N++SNAI +T Sbjct: 243 EPTNLRFLVQAVVEILEPSATQKDLDIRFDFDQTPEQIITDSLRLRQIITNLVSNAIKYT 302 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 SG I T N+ ++ V DTG+G++ + + KP+ + + + TGLGL Sbjct: 303 DSGTIEIKCQTENDNQWSLI-VTDTGIGISPEDQAQIFKPYYLVKLKNRNLSDRTGLGLT 361 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + +V G+ + STP +G+ + FP+ Sbjct: 362 IVDKLVKLLQGEINLVSTPGEGSTFTLTFPV 392 >gi|75908636|ref|YP_322932.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75702361|gb|ABA22037.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 933 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 93/384 (24%), Positives = 194/384 (50%), Gaps = 31/384 (8%) Query: 440 TRINKRK-MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 T IN RK E E++ L LE+ +GI+ ++ +G + N A +++ GY E+++ +T Sbjct: 297 TDINDRKRAEEELLHLSQALESAVEGISQLDTQGHYIKVNPAYAQITGYTPEEMIGMEWT 356 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYS 555 + + M ++L + + +E + GS ++++ ++ ++ Y Sbjct: 357 STVHPDDQEKMMAAYRQMLK-NGKVEMEARAMRKDGSAFYKQVVMVKAYNQQQECIGHYC 415 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 M DIS+ ++E +L K +F++ VSHE+RTPLT+I G +++ + + Sbjct: 416 F-MKDISD-RREVERL-------------KDEFVSVVSHELRTPLTSISGALDLLAS-KV 459 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P G+ N + + ++ ++ND+LDI +IESGK+ + + + + +++++ ++ Sbjct: 460 VPAGSEDAQRMLNIAANNTDRLVRLINDILDIERIESGKIQITPQACNAADLMTQSVEVM 519 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A + I + S + + AD + Q+ N++SNAI F+P+G + ++ Sbjct: 520 EELAEQGGIQLAMSPLS--AHLWADPDRIIQVFTNLISNAIKFSPAGATVWVTAKIPEKS 577 Query: 736 E--------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 E ++ V+D G G+ +LE + FGQ+ S + GTGLGL + ++++ Sbjct: 578 ELEKFPNPVILFEVKDQGRGIPADKLESIFERFGQVDASDSRQKGGTGLGLAICRSILQH 637 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLY 811 + G+ + ST +G+ P++ Sbjct: 638 HGGRIWAESTLGEGSTFFFTLPIF 661 >gi|66045681|ref|YP_235522.1| response regulator receiver [Pseudomonas syringae pv. syringae B728a] gi|63256388|gb|AAY37484.1| Response regulator receiver:GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:CHASE3 [Pseudomonas syringae pv. syringae B728a] Length = 1172 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 126/232 (54%), Gaps = 3/232 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ S +KS+FLA +SHE+RTPL + + ++++ + G +++A I +GN +L Sbjct: 488 QRASKYKSEFLANMSHELRTPLNSSLILAKLLA-ENPGENLTAEQVKFAESIYSAGNDLL 546 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++ND+LDISK+E+GK+ + E S+ V +L Q A EK++ P +L Sbjct: 547 NLINDILDISKVEAGKLEMRPENSSVSRLVEGLRTLFQPLAAEKKLAFTVDIQAGAPTML 606 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + ++QI N+LSNAI FT +G + + + + VRD+G+G+ + Sbjct: 607 FTDRQRLEQILKNLLSNAIKFTEAGS-VSMVVSRQPGAGIAFIVRDSGIGIAEEHQQGIF 665 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q + R GTGLGL +++ + G + S P +G++ ++ P Sbjct: 666 EAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLP 717 >gi|309389129|gb|ADO77009.1| Hpt sensor hybrid histidine kinase [Halanaerobium praevalens DSM 2228] Length = 1043 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 137/237 (57%), Gaps = 15/237 (6%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 AK+ AE + KS+FLA +SHEIRTP+ AI G +I L P ++ +Y+ + Sbjct: 305 RAKQKAELANKAKSEFLANMSHEIRTPINAIKGLIYLI-------LDTPLSMQQKDYLKK 357 Query: 633 --SGNLVLD-IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 S + L ++ND+LD SKIE+ K++L E +LD+ + + + + A +K + Sbjct: 358 IQSSTVSLSRLINDILDFSKIEAKKLDLEAEEFALDDVLHDLSNQAAMKAYDKGLEFFYD 417 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTG 745 +++P +++ D + QI LN++SNAI FT +G ++I+ + +++ L+ V+DTG Sbjct: 418 -TDHVPQKLVGDSLRLGQILLNLVSNAIKFTETGEVRLIVRIIKKTEQKIKLKFIVKDTG 476 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +GMT E +K F Q +S + GTGLGL +++ +V+ G+ + S PA+G+ Sbjct: 477 IGMTKEEQQKLFSQFTQADSSTTRKYGGTGLGLTISQRLVEKMGGEIKVESKPAEGS 533 >gi|170748504|ref|YP_001754764.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170655026|gb|ACB24081.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 909 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 81/255 (31%), Positives = 126/255 (49%), Gaps = 5/255 (1%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + H +E LS AK++A+ ++ KS FLA +SHEIRTP+ ++ +E++ Sbjct: 246 SAHLEAEVSARTADLSEAKQVADAANAAKSAFLATMSHEIRTPMNGVLVMAELLAGSDL- 304 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 R YA I RSG +L I+ND+LD +K+E+GK+ L PVS E A++L Sbjct: 305 ---PARQRRYAEVIARSGRSLLAIINDILDFAKVEAGKLELERVPVSPAELADTAVTLFA 361 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A + + A +P IL D + Q+ N +SNA+ FT +G + + Sbjct: 362 ERARTAGLDLAAEVAPEVPHAILGDPVRLGQVLSNFVSNALKFTEAGHVSVRMAIDAGDG 421 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +++ V DTG+G+ +L F Q S R GTGLGL +A+ +V A G + Sbjct: 422 CLVIAVSDTGIGIPQDKLATIFSAFSQADQSTTRRFGGTGLGLSIAQQIVAAMGGTVAVT 481 Query: 796 STPAKGTLIEIIFPL 810 S G+ P+ Sbjct: 482 SRVGAGSTFSARIPV 496 >gi|85076393|ref|XP_955920.1| hypothetical protein NCU01823 [Neurospora crassa OR74A] gi|28916951|gb|EAA26684.1| conserved hypothetical protein [Neurospora crassa OR74A] Length = 2476 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 132/238 (55%), Gaps = 14/238 (5%) Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 K+AE+ + KS FLA VSHE+RTPL +IG SE++++ N +E A+ I S + Sbjct: 1947 KLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDSNL----NKEQLEMADSIRVSAD 2002 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL---IRTSFAN 692 L+L ++ND+LD S++E+ KM L+ + +E V E + Y+N+++ ++ Sbjct: 2003 LLLTVINDILDFSRMEADKMKLYIIAFNPEEMVREVVRAAS-YSNKEKTSKKNVKIVHDI 2061 Query: 693 NIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTGVG 747 N+P +L D + Q+ N++ N++ FT G I + + T + V+DTG+G Sbjct: 2062 NLPPMLIYGDPIRLHQVLGNLIGNSLKFTEHGSITIGAKVDSETTEKATLTFWVKDTGIG 2121 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM-GKFYIFSTPAKGTLI 804 ++ +L+K PF Q S + G+GLGL + K+++++ M GK + S GT + Sbjct: 2122 ISPQQLDKLFLPFSQADESTARKYGGSGLGLSICKSLIESTMKGKIRLDSEENVGTTV 2179 >gi|294495496|ref|YP_003541989.1| integral membrane sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292666495|gb|ADE36344.1| integral membrane sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 575 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 81/261 (31%), Positives = 139/261 (53%), Gaps = 11/261 (4%) Query: 548 LPFSSCYSLTMHDIS-----EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 L F+S SL + E ++ +L ++ + +K + K++FL+ VSHE++TPLTA Sbjct: 309 LFFTSLISLIFFSWNRKLEEEVDKKTEQLENSNQRLQKLNRVKNEFLSMVSHELKTPLTA 368 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I SE ++ + + ++ IDR +V +DLLDIS+IESG+M E Sbjct: 369 IRTSSEFLREEDYDRETQEEMLDLIIRNIDRQSRMV----DDLLDISRIESGRMVFKEEK 424 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V L E + I +++ A + I I N+ PR+ AD + ++ +N+L+NAI FT Sbjct: 425 VDLKEIIDNVIQMMEPMATKHGIAIERELDND-PRVKADKDKLLRVFVNLLNNAIKFTAD 483 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 G+ I T + + V + V D G+G+ E EK + F Q+ ++ + + G+GLGL + Sbjct: 484 RGESIKIKTEETGDFVEISVIDKGIGIPENEQEKIFEKFYQVDSTSRRKVGGSGLGLAII 543 Query: 782 KAMVDANMGKFYIFSTPAKGT 802 K +++ + G + S P G+ Sbjct: 544 KGIIEGHGGSIRVKSEPGVGS 564 >gi|257439704|ref|ZP_05615459.1| putative response regulator receiver domain protein [Faecalibacterium prausnitzii A2-165] gi|257197844|gb|EEU96128.1| putative response regulator receiver domain protein [Faecalibacterium prausnitzii A2-165] Length = 1070 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 81/270 (30%), Positives = 143/270 (52%), Gaps = 23/270 (8%) Query: 556 LTMHDISEWKQEK----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-- 609 L D+S+ K+ + L A + AE S K++FL+ +SH+IRTP+ AI+G + + Sbjct: 528 LASMDVSQEKKAEIESHKALKEAYRAAENASRAKTEFLSNMSHDIRTPMNAIVGLTAIAG 587 Query: 610 --IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 I++Q + +E I +S +L ++N++LD+++IESG+M+L E SL E Sbjct: 588 ANIESQ-------DKVVECLGKITKSSRHLLGLINEVLDMARIESGRMSLAEEDFSLPEL 640 Query: 668 VSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 V ++L + +E + + + D ++Q+ +N++SNA+ +TP GG I Sbjct: 641 VDNLLTLTKPVIDEHHHQLEVHIEHIEHEAVCGDSLRIQQVFVNLMSNAVKYTPDGGNIT 700 Query: 727 ISTTHTSNEEVIL-----RVRDTGVGMTNYELEKAM-KPFGQIPNSQQIRGEGTGLGLPL 780 ++ N L + D G+GMT E +K M +PF + + + + +GTGLG+ + Sbjct: 701 LTIKEKPNGFSELGCYEFSIEDNGIGMTP-EFQKIMFEPFSRADDHRTTKVQGTGLGMAI 759 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 A+ +V+ G + S P KGT I + L Sbjct: 760 ARNIVNLMNGDIQVESAPNKGTKITVTVYL 789 >gi|307152409|ref|YP_003887793.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306982637|gb|ADN14518.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 667 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 113/399 (28%), Positives = 180/399 (45%), Gaps = 52/399 (13%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPV--EDILRKPFTVFLEQNTPSVMNHYL 513 ++L A D I ++N++GI+L K P E+I+ K + ++ +Y Sbjct: 262 ALLNAIPDLILLLNQQGIVLDCKYKSLKENSLPANFEEIIGKTVQEVFAPSIAELLLYYT 321 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM-HDISEWKQEKNKLS 572 L D Q E L K+ RI++ LT+ DI++ K + + Sbjct: 322 HNALINDELQIFEYEQLLKDKKH-YYEARIMVS----GRKEVLTLIRDITKNKLAQAQWQ 376 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 AK+ AE + KS FLA +SHE+RTPL I+G S+++ G +I+ I + Sbjct: 377 QAKEAAEAANHAKSAFLASMSHELRTPLNGILGLSQLLLEDAEEE-GYIEFIDDLKQIHQ 435 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG +L ++ D+LDISKIE+GKM L+ E L ++E + +Q + + +N Sbjct: 436 SGLHLLSLIEDILDISKIEAGKMTLYPETFDLPVLINEVKNTIQPLIKKNNNTLEVKLSN 495 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--------------------- 731 + ++AD + VKQI LN+LSNA FT GQII++ T Sbjct: 496 ALGAMVADRKRVKQILLNLLSNAAKFTDH-GQIILTVTRQEKDHLITAESSPQTNGNQSP 554 Query: 732 ---------------------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 S++ VI + DTG+GMT ++ K +PF Q +S + Sbjct: 555 KMNQINGYASPPTQATVSDISASSDWVIFSISDTGIGMTTEQMNKIFQPFVQADSSTTKK 614 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL + + + G + S A G+ + P Sbjct: 615 YGGTGLGLSICQRFCEMMGGSISVNSEVAVGSTFSVSLP 653 >gi|116628743|ref|YP_813915.1| Signal transduction histidine kinase [Lactobacillus gasseri ATCC 33323] gi|238852957|ref|ZP_04643356.1| sensor protein YycG [Lactobacillus gasseri 202-4] gi|282852391|ref|ZP_06261733.1| PAS domain S-box [Lactobacillus gasseri 224-1] gi|116094325|gb|ABJ59477.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus gasseri ATCC 33323] gi|238834407|gb|EEQ26645.1| sensor protein YycG [Lactobacillus gasseri 202-4] gi|282556133|gb|EFB61753.1| PAS domain S-box [Lactobacillus gasseri 224-1] Length = 621 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 97/382 (25%), Positives = 186/382 (48%), Gaps = 44/382 (11%) Query: 444 KRKMEI---EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 +R EI E +L ++L +DG+ +R G I N G +D++ KP T Sbjct: 254 ERTQEISDSERRRLDNVLTHMTDGVIATDRHGNITIINETALDFLGKTEKDVIGKPITNL 313 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITL---GSTKEEKLL--SLRIIIKKLPFSSCYS 555 L L ++ DL T +++ + +T++E +L + +I + F S Sbjct: 314 LG----------LKDVTIQDLLSTQQELVVRVNDNTRDEMILHANFSLIQRVTGFVSGLV 363 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +HDI++ Q+KN E+E + F++ VSHE+RTPLT++ + E + + Sbjct: 364 CVLHDITQ--QQKN---------ERE---QQQFVSNVSHELRTPLTSLRAYVEALND--- 406 Query: 616 GPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 G +P ++ + I ++ ++NDLL +S+++ G + E V+L++ V+ ++ Sbjct: 407 GAWKDPNIAPQFLHVIQDETERMIRMINDLLSLSRMDRGVARMDLEWVNLNDFVNHVLNR 466 Query: 675 VQLY-------ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 + ++K+ I+ F + + D + Q+ NI++NAI ++P GG I + Sbjct: 467 FDMMLKSDSDKMHKKKYTIKREFPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITV 526 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + + VIL + D G+G+ +L K F ++ ++ + GTGLGL ++K +V+A Sbjct: 527 RLLQ-AQKHVILSISDQGLGIPRKDLNKIFDRFYRVDKARSRKQGGTGLGLAISKEIVEA 585 Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809 + G+ + S G+ I P Sbjct: 586 HHGRIWADSAEGAGSTFYISLP 607 >gi|121593072|ref|YP_984968.1| multi-sensor hybrid histidine kinase [Acidovorax sp. JS42] gi|120605152|gb|ABM40892.1| multi-sensor hybrid histidine kinase [Acidovorax sp. JS42] Length = 1137 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 75/266 (28%), Positives = 141/266 (53%), Gaps = 12/266 (4%) Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 ++L + LT D E K A+ +A+ S +KS+FLA +SHE+RTPL + + Sbjct: 430 EQLQYQKQRLLTAQDALEAK--------ARDLAQA-SQYKSEFLANMSHELRTPLNSSLI 480 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 ++++ + + L + YA I +G +L+++ND+LD++KIE+G+ ++ PV++ Sbjct: 481 LAKLLADNKQQNL-TAEQVRYAQTIHNAGTDLLNLINDILDLAKIEAGQTSVEIGPVTVA 539 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724 + V+ + ++ A +K + +P I +D + + QI N+LSNA+ FT + G+ Sbjct: 540 KVVAGVMEPLRAQAQDKGLQFNAVVEPGVPAFITSDAQRLAQILKNLLSNALKFT-ARGE 598 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + + N+ + VRDTG+G+ E+ F Q S + GTGLGL +++ + Sbjct: 599 VTMRVFAGDNDTLCFAVRDTGIGIAPDLQERIFDAFHQADGSTHRKYGGTGLGLSISRDL 658 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810 G + S P +G++ + P+ Sbjct: 659 AQLLGGSIAVQSAPGEGSVFTLTLPV 684 >gi|52140921|ref|YP_085908.1| phosphate regulon sensor protein [Bacillus cereus E33L] gi|51974390|gb|AAU15940.1| phosphate regulon sensor protein [Bacillus cereus E33L] Length = 587 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 96/376 (25%), Positives = 181/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ L + + + + P Sbjct: 240 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEEYLDRLY--YESFHHPE 297 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 ++ + +E+I + K K + L + I++ F Sbjct: 298 II-------------ELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 344 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 345 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 388 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + + + Sbjct: 389 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHM 447 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+GG + + Sbjct: 448 VLDNKAGEKEISLQVNALKRVS-VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDK 506 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 507 YNAYI-KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 565 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 566 VDSEVGEGTTFTVVLP 581 >gi|332186852|ref|ZP_08388594.1| his Kinase A domain protein [Sphingomonas sp. S17] gi|332013185|gb|EGI55248.1| his Kinase A domain protein [Sphingomonas sp. S17] Length = 805 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 81/242 (33%), Positives = 124/242 (51%), Gaps = 13/242 (5%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI----EYANYIDRSG 634 EK + K+DFLA SHEIRTPL I+G ++V+ L + R E + +G Sbjct: 436 EKALAVKTDFLATTSHEIRTPLNGILGMTQVM-------LADIRLSSDTRERVEVMHGAG 488 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 + +V+DLLD++KIE G++ L P L + EA L + A K I T + Sbjct: 489 LTMRALVDDLLDVAKIEHGRLTLEQAPFDLAATIREASRLWEDQAAAKGIGFTTDLRDCP 548 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 ++ D ++QI N+LSNA+ FTP G++ +S + S + V +RV DTG+G+ +LE Sbjct: 549 TIVMGDSARIRQIVFNLLSNALKFTPE-GRVDLSVSRQS-KGVSIRVSDTGIGIPAEKLE 606 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + + F Q S + GTGLGL + + + A G + S GT + PL + Sbjct: 607 EIFEAFRQADASTTRQFGGTGLGLAICRRLAQAMGGDVTVDSELGHGTHFTLSLPLVEQP 666 Query: 815 HP 816 P Sbjct: 667 VP 668 >gi|304311042|ref|YP_003810640.1| histidine kinase [gamma proteobacterium HdN1] gi|301796775|emb|CBL44987.1| histidine kinase [gamma proteobacterium HdN1] Length = 542 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 79/258 (30%), Positives = 134/258 (51%), Gaps = 15/258 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 HD+ ++ L A++ AE S K+ FL+ +SHEIRTP+ +I ++++ + PL Sbjct: 150 HDVRRLNKD---LLRARESAEVASRAKASFLSNMSHEIRTPMNGVIASAQLLADT---PL 203 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + I+RS N +L ++NDLLD+SKIE+G M L L+E + EA L Sbjct: 204 -DAEQKDLVGLINRSANTLLAVLNDLLDLSKIETGTMTLEKRSFDLNEILQEACDLCIPQ 262 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736 A E+ + + + P + AD ++Q+ +N+++NA+ FTP G + + H +E Sbjct: 263 AEERGVNVCLTIEEGTPLSMFADPVRIRQVVMNLVANAVKFTPE-GSVTVEVGHDQIDEQ 321 Query: 737 ---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG-TGLGLPLAKAMVDANMGKF 792 VI+ + DTG+ + ++K G + + R G TGLGL + K++VD G Sbjct: 322 RFNVIVEINDTGIVIPKDRIDKLFDE-GDVDAASSARHFGSTGLGLTICKSLVDLMDGVI 380 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S KG + P+ Sbjct: 381 EVDSGAGKGASFIVTLPM 398 >gi|300869313|ref|ZP_07113904.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300332690|emb|CBN59102.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 887 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 88/244 (36%), Positives = 134/244 (54%), Gaps = 12/244 (4%) Query: 566 QEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 QE+ +L AK+ E + KS F+A +SHE+R+PL AI+GFS+++ P P Sbjct: 405 QERTAELVIAKEKVEDANQAKSLFIANMSHELRSPLNAILGFSQLMVRATNLP---PEQH 461 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E A I RSG+ +L ++N++LD+SKIE+GK L+ + L + + ++ L A + Sbjct: 462 ENAGIIYRSGDYLLTLINNVLDLSKIEAGKTILNPKDFDLHLLLDDLEDMLHLSATNAGL 521 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---- 739 + N+PR I D ++Q+ +N+LSNAI FT S GQI +S E + Sbjct: 522 KLVFKRHENVPRYICTDQVKLRQVLINLLSNAIKFT-SEGQITLSVFQGDRETTDIFNLH 580 Query: 740 -RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 RV+DTGVG+ EL K F Q ++++ EGTGLGL +++ V G + S Sbjct: 581 FRVQDTGVGIAAAELPKLFDTFSQAQAGKEMQ-EGTGLGLAISRKFVQLMGGDISVESKL 639 Query: 799 AKGT 802 KGT Sbjct: 640 GKGT 643 >gi|295108360|emb|CBL22313.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162] Length = 714 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 82/256 (32%), Positives = 133/256 (51%), Gaps = 17/256 (6%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN-PRY 623 K+ KN + A + AE + K+DFL+ +SH+IRTP+ AIIG + +I++ GN + Sbjct: 306 KKAKNVATEALQTAENANKAKTDFLSNMSHDIRTPMNAIIGITSLIRHDA----GNKAKV 361 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE--AISLVQLYANE 681 IEYA+ ID S +L I+ND+LD+SKIE+GK + S+ + + E I Q+Y + Sbjct: 362 IEYADKIDISSQHLLGIINDVLDMSKIEAGKTVFKYSDFSILDFIQELDTIFHTQIYEKQ 421 Query: 682 KRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI- 738 + I NI + D + QI N+LSNA+ +T GG+I + + Sbjct: 422 QTFTI---IKENIQHEWVNGDQVHLMQIFSNLLSNAVKYTQEGGEIQFFVEECETKSSVY 478 Query: 739 ----LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V D G+GM+ + F + +S + +GTGLG+ + K +V+A G + Sbjct: 479 AKYRFLVSDNGMGMSADFKDTIFDAFTRAESSLTNKIQGTGLGMAITKNLVEAMGGTIDV 538 Query: 795 FSTPAKGTLIEIIFPL 810 S +G+ E++ L Sbjct: 539 ESELGQGSCFEVLLDL 554 >gi|253988310|ref|YP_003039666.1| signal transduction histidine-protein kinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779760|emb|CAQ82921.1| signal transduction histidine-protein kinase [Photorhabdus asymbiotica] Length = 776 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 132/247 (53%), Gaps = 8/247 (3%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + +++ + +L+ AKK A++ + K++FLA +SHE+RTPL +IGF+ Q Sbjct: 268 MEQFEIQNVELAIAKKRAQEAARIKTEFLANMSHELRTPLNGVIGFTR----QTLKTSLT 323 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + EY + I+RS N +L+I+ND+LD S++E+ K+ L P L E + E I L+ A Sbjct: 324 IQQTEYLHIIERSANHLLNIINDILDFSRLEADKLILENIPFLLQETIDEVIVLLTPSAK 383 Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV- 737 K I + S IP ++ D ++QI N++ NAI FT G +I I+ + ++ Sbjct: 384 NKNIQLTHSIDPQIPNLVIGDPMRLQQILTNLIGNAIKFTEQGSVKIDINLVQQQHHKIN 443 Query: 738 -ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + V DTG+G++ + + F Q S R GTGLGL + + ++ G S Sbjct: 444 LAMTVSDTGIGISPEQQPHLFQAFHQADASISRRYGGTGLGLVITQKLIREMGGNISFTS 503 Query: 797 TPAKGTL 803 KG++ Sbjct: 504 EQGKGSV 510 >gi|160941294|ref|ZP_02088631.1| hypothetical protein CLOBOL_06187 [Clostridium bolteae ATCC BAA-613] gi|158435855|gb|EDP13622.1| hypothetical protein CLOBOL_06187 [Clostridium bolteae ATCC BAA-613] Length = 1075 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 121/230 (52%), Gaps = 18/230 (7%) Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA-NYIDRSGNLVLDIV 641 + KSDFL+R+SHEIRTP+ AIIG S + +G+ +E + I S +L ++ Sbjct: 556 AAKSDFLSRMSHEIRTPMNAIIGMSTIAAQ----SIGDDEQVEDCISKIGISSRFLLSLI 611 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL--- 698 ND+LD+S+IESGKM L E + +E ++ S+ A+ K + + + +L Sbjct: 612 NDILDMSRIESGKMLLKSEKIPTEEFINGINSICYSQADVKGV----EYECIVDPVLDDY 667 Query: 699 --ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEVILR--VRDTGVGMTNYE 752 D ++Q+ +NILSNAI FT GG++ S + + + LR V DTGVGM Sbjct: 668 YIGDAMKLQQVLINILSNAIKFTQEGGKVTFSASQRRKTKNDASLRFIVNDTGVGMNEEF 727 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 L +PF Q GTGLGL ++K +VD GK + S GT Sbjct: 728 LPHLFEPFSQESTGTTSLYGGTGLGLAISKNIVDMMDGKITVRSIKGIGT 777 >gi|32473732|ref|NP_866726.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32444268|emb|CAD74266.1| probable sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 574 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 129/251 (51%), Gaps = 2/251 (0%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + K++K L + EK + + + VSH++RTPLT I + +I++ G + + Sbjct: 195 DLKEQKQLLLQKNEKLEKLYATSQEIVDNVSHDLRTPLTVIKDYVAIIRDGLVGDVNQEQ 254 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + + R+ +L +V+DLLD SK+E+G ++L + LD + LV AN K Sbjct: 255 AEMLSKILGRADDLN-GMVDDLLDKSKLEAGLLHLSRRTIGLDSIIQRVHMLVANRANTK 313 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRV 741 ++ ++ A+ + D + ++ N+ +NAI F P GG + I T +SN E+ ++ V Sbjct: 314 QVSLQLEAADGEIEVYCDAEKITRVITNLATNAIKFVPQGGNVCIRTKLSSNGEDALVEV 373 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D G G+ + EL+K F Q ++ + G GLGL +A+ + N G + S +G Sbjct: 374 VDDGPGIESAELKKIFGRFEQASHNGTKQNSGVGLGLNIAQKLATLNFGSIDVDSEVGEG 433 Query: 802 TLIEIIFPLYD 812 T+ + PL D Sbjct: 434 TVFRLSLPLPD 444 >gi|330830927|ref|YP_004393879.1| Tmao reductase sytem sensor tors [Aeromonas veronii B565] gi|328806063|gb|AEB51262.1| Tmao reductase sytem sensor tors [Aeromonas veronii B565] Length = 941 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 86/256 (33%), Positives = 131/256 (51%), Gaps = 13/256 (5%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 +E K A+ AE+ + KS FLA +SHEIRTP+ I+G ++++ + Sbjct: 429 EEVEKQRQARAEAEQANRAKSVFLATMSHEIRTPMNGILGGLTLLEDTHL----SDTQQR 484 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y I+ SG +L+I+ND+LD SKIE+G + EP L + V E +L + A K + Sbjct: 485 YLAAIEHSGESLLEILNDILDYSKIEAGHVEARREPFPLFQLVDELGALFRPKAEAKGVT 544 Query: 686 IRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----HTSNEEVILR 740 + +A + P + DL ++Q+ N+L NA+ FT GQI ++ H E +R Sbjct: 545 LALEYAPWLAPVVEGDLGKLRQVLGNLLGNAVKFTAR-GQITLTVAPLVCHGPCAEPCIR 603 Query: 741 --VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 VRDTG G+ E E + F Q +G GTGLGL +++ +V A G+ + S P Sbjct: 604 FVVRDTGPGIPADEQEAVFEAFRQRKRDIGHQG-GTGLGLAISRKLVTAMGGELILASEP 662 Query: 799 AKGTLIEIIFPLYDTS 814 KG PL +S Sbjct: 663 GKGCEFSFSLPLQRSS 678 >gi|288940785|ref|YP_003443025.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288896157|gb|ADC61993.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1053 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 128/244 (52%), Gaps = 9/244 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E +Q + +L+H ++AE + KS FLA +SHEIRTP+ AI+G + +++ N R Sbjct: 425 ELRQLEVELAHRAELAESATRAKSAFLANMSHEIRTPMNAILGLTHLLRRDGATATQNER 484 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 I+ + +L I+ND+LD+S+IESG++ L +L+ + + SLV A K Sbjct: 485 L----GKIESATRHLLAILNDILDLSRIESGRLQLEDADFALESLLDQVRSLVADAAQSK 540 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL-- 739 + + + +PR L D+ ++QI LN SNA+ FT G ++ + ++ +L Sbjct: 541 GLTLSIE-STGLPRWLHGDVTRLRQILLNYASNAVKFTERGSVVLRARPVAEDDSGVLVR 599 Query: 740 -RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG+G+ +L + F Q +S R GTGLGL + + G+ STP Sbjct: 600 FEVADTGIGIAPEQLASLFRAFSQADSSTTRRYGGTGLGLAINMQLAQLMGGETGAESTP 659 Query: 799 AKGT 802 G+ Sbjct: 660 GVGS 663 >gi|309782952|ref|ZP_07677672.1| multi-sensor hybrid histidine kinase [Ralstonia sp. 5_7_47FAA] gi|308918376|gb|EFP64053.1| multi-sensor hybrid histidine kinase [Ralstonia sp. 5_7_47FAA] Length = 652 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 97/358 (27%), Positives = 163/358 (45%), Gaps = 35/358 (9%) Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530 +GI+ + N A + GY EDIL K + Q + + ++ LE++ Sbjct: 161 QGIVRTWNAASRSILGYAREDILGKSAEILYPQAARE----------AGEFQRKLERV-- 208 Query: 531 GSTKEEKLLSLRIIIKK--LPFSSC---------------YSLTMHDISEWKQEKNKLSH 573 +E L R +++K PF + +S + D +E + + L Sbjct: 209 --RREGSLTDDRWMLRKDGTPFYASSVVTAIHNETGQLVGFSKIIRDSTEERIAADALRR 266 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK+ AE + K FLA +SHE+RTPLT I+ +++ ++ P +E + R+ Sbjct: 267 AKEEAETANHAKDHFLAVLSHELRTPLTPILTAVHLLELRQDLPAYAVAQLE---VVRRN 323 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 L +++DLLDI+ I GK+ + F V L + + + + KR+ ++T F Sbjct: 324 AELEARLIDDLLDITGIARGKLAVSFALVDLYPLLESTLEISRNDMQAKRLSLKTRFEAG 383 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 R+ AD ++Q+ N++ NA+ FTP GG I + + S V + V+D G+G+ L Sbjct: 384 RSRLYADGARIQQVIWNLVRNAVKFTPEGGAIEVRVWNPSASTVAVSVKDNGIGIEPDAL 443 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA-KGTLIEIIFPL 810 + F Q S R G GLGL +A A+V + G S +G + PL Sbjct: 444 PRIFSAFEQADASITQRFGGLGLGLAIAYALVQKHEGSLIAESAGRHEGATFTLTLPL 501 >gi|218709148|ref|YP_002416769.1| sensory box histidine kinase/response regulator [Vibrio splendidus LGP32] gi|218322167|emb|CAV18281.1| sensory box histidine kinase/response regulator [Vibrio splendidus LGP32] Length = 1430 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 82/280 (29%), Positives = 138/280 (49%), Gaps = 8/280 (2%) Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 +++ L+L+ I L + + DI+E KQ++ +L+ A++ A + KS FLA +SH Sbjct: 751 QKRWLNLQSKISDLGEYYEWDSVLTDITELKQQQEELTQARQSAIAATEAKSRFLANMSH 810 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 EIRTPL I+ E+ + G + + +S N +L IVND+LD SKIE+GK Sbjct: 811 EIRTPLGGIVSLLELSEQYEVG----YEVQKIHTTLSQSANNLLHIVNDILDFSKIEAGK 866 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILS 713 + L ++P SLD L A+ K + + + +L D + Q+ N+LS Sbjct: 867 LTLDYQPASLDTLTLRVTQLQARQAHAKGLQFKFWLDPELNDLVLMDDIRIGQVLNNLLS 926 Query: 714 NAIHFTPSGGQIIIST---THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 NAI FT G + + +++ V D+G+G++ + +PF Q + Sbjct: 927 NAIKFTEYGTVGLAAKLLDLDGEQQQICFEVFDSGIGISEEHIRNLFQPFVQADEGTTRK 986 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 G+GLGL ++K +++ G + S G+ I PL Sbjct: 987 YGGSGLGLTISKQLIEQMGGSLNVTSKINIGSTFSITLPL 1026 >gi|166033331|ref|ZP_02236160.1| hypothetical protein DORFOR_03057 [Dorea formicigenerans ATCC 27755] gi|166027688|gb|EDR46445.1| hypothetical protein DORFOR_03057 [Dorea formicigenerans ATCC 27755] Length = 1077 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 83/257 (32%), Positives = 136/257 (52%), Gaps = 21/257 (8%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV----IKNQRFGPLGNP 621 + + L A + AE + K++FL+ +SH+IRTP+ AI+G + + I++Q Sbjct: 549 ESRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMNAIVGLTAIAGANIESQ-------E 601 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 R IE I S +L ++N++LD+++IESGKM L E +L E V I+L + +E Sbjct: 602 RVIECLGKITESSRHLLGLINEVLDMARIESGKMTLAQEDFNLSELVDNLITLTKPVLDE 661 Query: 682 KRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + N+I + D ++Q+ +N++SNAI +TP GG II S N L Sbjct: 662 HKHNFDIHI-NHIEHEAVCGDSLRIQQVFVNLMSNAIKYTPDGGNIIFSIEEKPNGFSEL 720 Query: 740 -----RVRDTGVGMTNYELEKAM-KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + D G+GM+ E +K M PF + + + R +GTGLG+ +++ +V+ G Sbjct: 721 GCYEFTIEDNGIGMSP-EFQKIMFDPFSRADDQRTTRVQGTGLGMAISRNIVNLMNGTIK 779 Query: 794 IFSTPAKGTLIEIIFPL 810 + ST KGT I + L Sbjct: 780 VDSTLHKGTKITVTIYL 796 >gi|157960115|ref|YP_001500149.1| histidine kinase [Shewanella pealeana ATCC 700345] gi|157845115|gb|ABV85614.1| histidine kinase [Shewanella pealeana ATCC 700345] Length = 885 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 77/240 (32%), Positives = 138/240 (57%), Gaps = 7/240 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 K+ AK AEK + KS FLA +SHEIRTPL IIG S+++ + + + N EY Sbjct: 368 KILRAKLEAEKANQAKSSFLANMSHEIRTPLNGIIGMSDIMADTKLTAIQN----EYLQT 423 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+ S +L ++ND+LD+SKIESG +++ + E V + ++++ EK + + Sbjct: 424 IETSSQTLLLLINDILDLSKIESGNLSIINTDTDISEVVYDTLTMILAKVTEKSLTLAVE 483 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE-EVILRVRDTGV 746 ++ P +++ D ++Q+ +N+LSNA+ FT GG ++++S+ +T++ ++I+ + D+G+ Sbjct: 484 IDSDTPYLISLDEHRMRQVLMNLLSNAVKFTHEGGIRVVVSSKNTADYCDMIISIYDSGI 543 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ + + PF Q ++ GTGLGL + K +V+ G+ I S +G I Sbjct: 544 GIAKEKQQYIFSPFTQEDDTTTREFGGTGLGLAICKQLVELMGGEISINSVKGQGCCFSI 603 >gi|42518152|ref|NP_964082.1| two-component regulatory system histidine kinase [Lactobacillus johnsonii NCC 533] gi|268318622|ref|YP_003292278.1| two-component system sensor histidine kinase [Lactobacillus johnsonii FI9785] gi|41582436|gb|AAS08048.1| two-component regulatory system histidine kinase [Lactobacillus johnsonii NCC 533] gi|262396997|emb|CAX66011.1| two-component system sensor histidine kinase [Lactobacillus johnsonii FI9785] gi|329666464|gb|AEB92412.1| two-component system histidine kinase [Lactobacillus johnsonii DPC 6026] Length = 616 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 97/382 (25%), Positives = 186/382 (48%), Gaps = 44/382 (11%) Query: 444 KRKMEI---EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 +R EI E +L ++L +DG+ +R G I N G +D++ KP T Sbjct: 249 ERTQEISDSERRRLDNVLTHMTDGVIATDRHGNITIINETALDFLGKTEKDVIGKPITNL 308 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITL---GSTKEEKLL--SLRIIIKKLPFSSCYS 555 L L ++ DL T +++ + +T++E +L + +I + F S Sbjct: 309 LG----------LKDVTIQDLLSTQQELVVRVNDNTRDEMILHANFSLIQRVTGFVSGLV 358 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +HDI++ Q+KN E+E + F++ VSHE+RTPLT++ + E + + Sbjct: 359 CVLHDITQ--QQKN---------ERE---QQQFVSNVSHELRTPLTSLRAYVEALND--- 401 Query: 616 GPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 G +P ++ + I ++ ++NDLL +S+++ G + E V+L++ V+ ++ Sbjct: 402 GAWKDPNIAPQFLHVIQDETERMIRMINDLLSLSRMDRGVAKMDLEWVNLNDFVNHVLNR 461 Query: 675 VQLY-------ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 + ++K+ I+ F + + D + Q+ NI++NAI ++P GG I + Sbjct: 462 FDMMLKSDTDKTHKKKYSIKREFPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITV 521 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + + VIL + D G+G+ +L K F ++ ++ + GTGLGL ++K +V+A Sbjct: 522 RLLQ-AQKHVILSISDQGLGIPRKDLNKIFDRFYRVDKARSRKQGGTGLGLAISKEIVEA 580 Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809 + G+ + S G+ I P Sbjct: 581 HHGRIWADSAEGSGSTFYISLP 602 >gi|42523783|ref|NP_969163.1| hypothetical protein Bd2335 [Bdellovibrio bacteriovorus HD100] gi|39575990|emb|CAE80156.1| unnamed protein product [Bdellovibrio bacteriovorus HD100] Length = 713 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 77/261 (29%), Positives = 137/261 (52%), Gaps = 7/261 (2%) Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 S+ SLT I E + + +L AK AE+ S KS+FLAR+SHEIRTPL +++G E++ Sbjct: 292 SAVTSLT-GKIRELNETQGQLKSAKDQAEEASRAKSEFLARMSHEIRTPLNSVLGMLELL 350 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + + RY+ +G + ++NDLLD SKIE+ + + ++ V Sbjct: 351 RETQLSK-DQERYL---TLFSHAGENLKALINDLLDFSKIEAKALTVENVSYNIHSTVRS 406 Query: 671 AISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGG-QIIIS 728 ++Q+ A E+ + + ++P + D ++Q+ N++ NA+ FT G ++ + Sbjct: 407 VFDILQIKAEEQGLHFELHISKDVPPLQWGDPTRLRQVLFNLIGNALKFTNEGSVKVKLE 466 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 T + E++++ V+DTG+G+ K F Q + + GTGLGL ++K +V+ Sbjct: 467 LTKDAPEQLLIEVQDTGIGIPRERQSKLFSSFAQGDPTIARKYGGTGLGLVISKNLVEIM 526 Query: 789 MGKFYIFSTPAKGTLIEIIFP 809 G + S +GT +I+ P Sbjct: 527 GGTMEMKSLAGRGTTFKILLP 547 >gi|298492081|ref|YP_003722258.1| integral membrane sensor hybrid histidine kinase ['Nostoc azollae' 0708] gi|298233999|gb|ADI65135.1| integral membrane sensor hybrid histidine kinase ['Nostoc azollae' 0708] Length = 690 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 71/215 (33%), Positives = 120/215 (55%), Gaps = 9/215 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FL+ +SHEIRTP+ +I +E++ + + + I SGN +L I+ND+ Sbjct: 295 KSEFLSNMSHEIRTPMNGVICMAELLSMKNL----SEEQQDIVQTIRDSGNALLVIINDI 350 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703 LD SKIESG + L L + + L+ A K I + S ++P IL D Sbjct: 351 LDFSKIESGNLQLEEHRFILRDIIKSVFKLLSTQAATKNIHLEYSINPDVPTNILGDATR 410 Query: 704 VKQIALNILSNAIHFTPSG--GQIIISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKP 759 ++Q+ LN++SNAI FT G +++ H ++ E+++ ++DTG+G+ + L + +P Sbjct: 411 LRQVLLNLISNAIKFTEHGHVSIAVLANKHQEDQKIELMISIKDTGIGIEHDRLNQLFQP 470 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 F Q S + GTGLGL ++K++V+ GK ++ Sbjct: 471 FTQADTSISRKYGGTGLGLAISKSLVNLMGGKIWV 505 >gi|254446415|ref|ZP_05059891.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198260723|gb|EDY85031.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 780 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 79/246 (32%), Positives = 123/246 (50%), Gaps = 9/246 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 KL A++ AE KSDFLA +SHE+RTP+ AIIG S V++ + R IE Sbjct: 260 KLVEARERAETALETKSDFLATMSHELRTPMNAIIGMSSVLQFEDLDE-SRARQIE---V 315 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I +S +LD++ND+LD SKIE+ ++ L L + EA+ + R++ + Sbjct: 316 IRKSSVNLLDLINDILDFSKIEANRLELENNAFDLVACIEEAMDITAAAKRNNRLVYCVN 375 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII----ISTTHTSNEEVILRVRDT 744 F +P I D+ V+QI +N+L+NA FT G + + +E + + VRDT Sbjct: 376 FDPTLPSHIKGDVTRVRQILVNLLNNAFKFTKKGTVTMDVFHLPADRRGSERIQISVRDT 435 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ L+ + F Q S GTGLGL ++ + A G + S G++ Sbjct: 436 GIGIPEESLKSIFESFTQANGSTSREFGGTGLGLTISYRLALAMGGDIKVESEYGTGSVF 495 Query: 805 EIIFPL 810 P+ Sbjct: 496 HFTMPI 501 >gi|145300269|ref|YP_001143110.1| aerobic respiration control sensor protein ArcB [Aeromonas salmonicida subsp. salmonicida A449] gi|142853041|gb|ABO91362.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 770 Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 75/269 (27%), Positives = 142/269 (52%), Gaps = 24/269 (8%) Query: 545 IKKLPFSSCYSLTM------HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 ++K+PF + + DI+E KQ ++KL EK S K+ F++ +SHE+RT Sbjct: 244 LRKVPFFDRFGKRLGLLGFGRDITERKQYQDKL-------EKASRDKTTFISTISHELRT 296 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PL I+G S ++ + PL +PR + I S + +I ND++D+ K++ ++ + Sbjct: 297 PLNGIVGLSRMLMDT---PL-DPRQHQQLKTIHLSAVTLGNIFNDIIDLDKLDRRRLEIA 352 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIH 717 P+ L + E +L ++ A +K + + ++P+ ++AD ++Q+ N++ NA+ Sbjct: 353 PTPIDLPAFLDELETLSRIQAEQKGLYLHFDRDGDMPQFVMADGTRLRQVLWNLVGNAVK 412 Query: 718 FTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 FT GG + +H ++ + V DTGVG+ + EK + Q+ + G Sbjct: 413 FTDEGGVTVRCLSHAADVPGKLALHFEVEDTGVGIPRAQQEKIFAMYYQVQGKKH--ATG 470 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TG+GL +++ +V A G+ Y+ S P +G+ Sbjct: 471 TGIGLAVSRQLVQAMGGQLYVDSDPGEGS 499 >gi|317492549|ref|ZP_07950976.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919299|gb|EFV40631.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 952 Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 82/260 (31%), Positives = 132/260 (50%), Gaps = 15/260 (5%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 444 VMVDVSARVKIEESLQELANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSL- 502 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVS-LDEAVSEAI 672 P R + + S L+L I++D+LD SKIES ++ + FEP + + + Sbjct: 503 PEETQRLLAA---MSNSSGLLLKIISDILDFSKIESEQLKIEPGTFEPRKVIPHIIGNYL 559 Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 LV KR+++ +P + D+ ++Q+ N+LSNAI FT +G II Sbjct: 560 PLVV----RKRLVMYCFIEPEVPDSVAGDIMRIQQVLSNLLSNAIKFTDTG--CIILQVR 613 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + R+RDTG+G+ ++ K PF Q+ Q +GTGLGL + + +V G Sbjct: 614 VQDFYLEFRIRDTGLGIPFRDVMKLFDPFFQVGTGVQRHFQGTGLGLAICEKLVSLMDGD 673 Query: 792 FYIFSTPAKGTLIEIIFPLY 811 + S P G++ + P+Y Sbjct: 674 IAVESEPGMGSIFTVRIPMY 693 >gi|47564998|ref|ZP_00236041.1| sensory box histidine kinase PhoR [Bacillus cereus G9241] gi|47557784|gb|EAL16109.1| sensory box histidine kinase PhoR [Bacillus cereus G9241] Length = 587 Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 96/376 (25%), Positives = 181/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ L + + + + P Sbjct: 240 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEEYLDRLY--YESFHHPE 297 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 ++ + +E+I + K K + L + I++ F Sbjct: 298 II-------------ELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 344 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 345 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 388 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + + + Sbjct: 389 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHM 447 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+GG + + Sbjct: 448 VLDNKAGEKEISLQVNALKRVS-VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDK 506 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 507 YNAYI-KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 565 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 566 VDSEVGEGTTFTVVLP 581 >gi|304309740|ref|YP_003809338.1| predicted histidine kinase [gamma proteobacterium HdN1] gi|301795473|emb|CBL43671.1| predicted histidine kinase [gamma proteobacterium HdN1] Length = 895 Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 123/240 (51%), Gaps = 10/240 (4%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + K+ + EK + KS+FLA +SHEIRTP+ ++G +E++ G N R +Y Sbjct: 357 EQKVEERTRKLEKANQAKSEFLANMSHEIRTPMNGVLGMTELL----LGTELNTRQQQYT 412 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I S +L I+ND+LD SKIE+GK+ L P +L+ V + ++ L +K I + Sbjct: 413 RTIHNSALSLLGIINDILDYSKIEAGKLELESVPFNLEILVDDCTAIFSLKCAQKPIQLT 472 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----HTSNEEVILRVR 742 + A P ++ D ++QI +N+ NA FT G+I I H+ + +R Sbjct: 473 SRIAPGTPIDLVGDPTRLRQILINLTGNAFKFTEK-GEICIGIEFLEDHSKQVRLKFSIR 531 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D+G+G++ ++ K + F Q S + GTGLGL + K + + G+ + S G Sbjct: 532 DSGIGLSEEQIGKLFQSFSQADTSTTRKYGGTGLGLAICKQLAELMEGEIGVDSRLGHGA 591 >gi|159901042|ref|YP_001547289.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159894081|gb|ABX07161.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 492 Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 129/237 (54%), Gaps = 12/237 (5%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY-----IEYANYIDRSGNLVLD 639 +SDF+A +HE+R+PLT+I GF++++ NP + I Y I R+ + + Sbjct: 251 RSDFMALAAHELRSPLTSIRGFADMLL------WSNPEHFSAEEISYIEGIGRNIQRLTE 304 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699 ++ND+++++++E+ + +PV L + +S + + A K++ + N +P + Sbjct: 305 LMNDVVELARLETQRNEHTPQPVDLRQVLSAVLDEFRPRAERKKLQLDCLLPNELPLLSL 364 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759 D ++QI+ +++SNAI +TP GQI I + ++++ VRDTG+G++ E + Sbjct: 365 DPLHIRQISHHLISNAIKYTPEQGQIQIEVQQRID-DILVVVRDTGIGISLREQPRIFGR 423 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 F + N GTGLGL +AKA+V+ N G Y S +GT + FPL P Sbjct: 424 FFRNDNPLSRAAGGTGLGLSIAKALVEMNHGSIYFESIEEEGTTFYVAFPLALVCEP 480 >gi|149909787|ref|ZP_01898438.1| sensor protein TorS [Moritella sp. PE36] gi|149807119|gb|EDM67075.1| sensor protein TorS [Moritella sp. PE36] Length = 970 Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 78/240 (32%), Positives = 130/240 (54%), Gaps = 9/240 (3%) Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 + AK+ AE ++ KS FLA +SHEIRTP+ ++G E++ + PL + + Sbjct: 457 AKAKQQAEDANNAKSVFLANMSHEIRTPMNGMLGTLELLSD---TPLSTQQQTYTQTIL- 512 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 SG +LDI+ND+LD SKIE+G + + V+L + I L++ A K + + + A Sbjct: 513 TSGENLLDILNDILDYSKIEAGHIEVSNRAVNLQRLGNNVIDLMRARAESKGLNLTFNLA 572 Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + + +LADL ++QI +N+++NAI FT SG + TH +E++ + DTG G+ + Sbjct: 573 DKLDIWVLADLGKLRQIIINLVNNAIKFTTSGSVTLAIATH--DEQLSFSITDTGCGIAD 630 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + F Q+ N GTGLGL +++ +V A G + S +G+ PL Sbjct: 631 DKQKAVFDAFTQVANLS--SATGTGLGLAISQRLVSAIQGTLSLTSIENQGSCFYFKIPL 688 >gi|45657908|ref|YP_001994.1| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45601149|gb|AAS70631.1| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 974 Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 139/244 (56%), Gaps = 3/244 (1%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 K+ + K E +KS+FLA +SHE+RTPL +++ S+ + + + L + +E A Sbjct: 532 KSDIEQKTKQLELSGKYKSEFLANMSHELRTPLNSLLILSKDLADNKRKNLSEDQ-VESA 590 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 N I +SG+ +L ++ND+LD+SKIESGKM+++ E V L + E +S +L A EK++ + Sbjct: 591 NIIYKSGHDLLVLINDVLDLSKIESGKMSVNLERVVLRKFAKELMSTFKLQATEKKLDLD 650 Query: 688 TSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 F +++P ++ D + QI N++SNA+ FT G++ + + ++++ V D+G+ Sbjct: 651 LIFDDDLPEVIRTDSHRLNQILKNLISNALKFTER-GKVQVEIKKQNKDKILFSVIDSGI 709 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ + + F Q S + GTGLGL +++ + G+ ++ S +G+ + Sbjct: 710 GIPEEKHSAIFEAFQQADGSTSRKYGGTGLGLSISRELAKLLGGEIFLKSKVNQGSTFSL 769 Query: 807 IFPL 810 P+ Sbjct: 770 SLPI 773 >gi|260778949|ref|ZP_05887841.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450] gi|260605113|gb|EEX31408.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450] Length = 786 Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 132/254 (51%), Gaps = 12/254 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ISE K+ A + AEK + KS FLA +SHE+RTP+ ++G +++IK++ Sbjct: 242 ISELKRNNLAYQVATENAEKANEAKSIFLATMSHELRTPMNGVLGIAQIIKDES----QE 297 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV-SEAISLVQLYA 679 + A + SG ++ I+ND+LD SK+E GK+ L P S+ E V S +L A Sbjct: 298 LETKKQAQILIDSGQHLMTILNDILDFSKVEQGKLELEIHPFSIGELVLSLEKTLGPQAA 357 Query: 680 NEK-RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNE 735 N+ + +I+ NI + D +QI N++ NAI FT +G + + T+ N Sbjct: 358 NKGLKFVIQNKVPANI-ELHGDPARTRQILFNLVGNAIKFTQTGKIEVEFALDTSIPPN- 415 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V + V D+G+G+ +L+ PF Q S + GTGLGL + K +V+ GK +F Sbjct: 416 -VCMSVTDSGIGIEREKLDTIFTPFEQAELSTTRKFGGTGLGLSIVKRLVEMMGGKVSVF 474 Query: 796 STPAKGTLIEIIFP 809 S P GT + P Sbjct: 475 SQPNVGTQFTLTIP 488 >gi|120611753|ref|YP_971431.1| integral membrane sensor signal transduction histidine kinase [Acidovorax citrulli AAC00-1] gi|120590217|gb|ABM33657.1| integral membrane sensor signal transduction histidine kinase [Acidovorax citrulli AAC00-1] Length = 595 Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 77/271 (28%), Positives = 138/271 (50%), Gaps = 14/271 (5%) Query: 550 FSSCYSLTM--------HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 F+ +S T+ + + +Q+ L+ ++ A + KS+FL +SHE+RTPLT Sbjct: 323 FAGLFSATLIALGAGFLRGLHQLEQKNLALAASEAQARSANRAKSEFLTAISHELRTPLT 382 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 +I GF+E+++ + L P Y E A I + + +++++LD++K+++G M + Sbjct: 383 SIHGFAELMEQR----LEQPSYREAAGLIRSAAEHLNTLLSEILDLAKVQAGAMPIVPGD 438 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTP 720 ++ E V + L + A +K + + A +P++L D +KQI N+LSNA+ FT Sbjct: 439 HAVRELVGTTVDLFAISAVQKGLTLEMHIAPGVPQVLRCDGLRLKQILNNLLSNALKFTR 498 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 GG + + T V RV DTG G+ E + F Q + GTGLGL L Sbjct: 499 EGG-VRLETDTADGHSVRFRVTDTGPGIPADLHEVIFEKFSQGSADVSTQHGGTGLGLAL 557 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 ++ + + G+ + S P +G + P++ Sbjct: 558 SRGLAELMGGRLTVASEPGQGACFTLELPMH 588 >gi|117924515|ref|YP_865132.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117608271|gb|ABK43726.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 944 Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 129/250 (51%), Gaps = 13/250 (5%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S +KS+FLA +SHE+RTPL +++ ++++ N G L + +E A I SG +L ++ Sbjct: 379 SRYKSEFLANMSHELRTPLNSLLILAKMLSNNEEGNLSEDQ-VESAQVIYESGRDLLHLI 437 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-D 700 ND+LD+SK+E+G+M+L+ E L + A +K + S A+++P+ LA D Sbjct: 438 NDILDLSKVEAGRMDLYVESRPLQALPQMLERTFKPVAQQKSLAFHWSIADDLPKELATD 497 Query: 701 LRSVKQIALNILSNAIHFTPSGG-----------QIIISTTHTSNEEVILRVRDTGVGMT 749 +Q+ N LSNA FT SG +I +++ T +++ V D+G+G+ Sbjct: 498 WPKAEQVVRNFLSNAFKFTESGHVTVAIHKPQAHRIFMNSDLTHKNALMISVTDSGIGIA 557 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + E + F Q + GTGLGL +++ G+ + S P KG+ +I P Sbjct: 558 EDKRELIFEAFRQADGTTSRAYGGTGLGLTISRKFAALLGGEIQVESAPGKGSCFTLILP 617 Query: 810 LYDTSHPHDC 819 L + H Sbjct: 618 LESPNLEHQA 627 >gi|300721895|ref|YP_003711173.1| Sensor protein BarA [Xenorhabdus nematophila ATCC 19061] gi|297628390|emb|CBJ88955.1| Sensor protein BarA [Xenorhabdus nematophila ATCC 19061] Length = 773 Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 81/238 (34%), Positives = 123/238 (51%), Gaps = 8/238 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L+ AKK A++ K++FLA +SHE+RTPL +IGF+ Q + +EY Sbjct: 267 ELTIAKKRAQEAVRIKTEFLANMSHELRTPLNGVIGFTR----QMLKTPITSQQMEYLYV 322 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 IDRS N +L I+ND+LD S++ES K+ L P L + V+E I L+ AN K + + Sbjct: 323 IDRSANNLLKIINDILDFSRLESNKLLLEQVPFLLRDTVNEVIELLTPAANVKNLPLHHH 382 Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTG 745 + +P ++ D ++QI N++ NAI FT GG + +I V DTG Sbjct: 383 IDDKLPNLMIGDPIRLQQILTNLIGNAIKFTDKGGVTLDIKLRQQQHHLIQIDFTVTDTG 442 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G+ + F Q S GTGLGL + K +V+ G+ S +KGT+ Sbjct: 443 IGIKPEHRPILFQAFNQADASITRHYGGTGLGLSITKRLVNEMKGEIDFISEVSKGTV 500 >gi|255015222|ref|ZP_05287348.1| two-component hybrid sensor kinase/response regulator [Bacteroides sp. 2_1_7] Length = 793 Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 84/280 (30%), Positives = 146/280 (52%), Gaps = 18/280 (6%) Query: 546 KKLPFS------SCYSLTMHDISEWKQEKNK---LSHAKKIAEKESSHKSDFLARVSHEI 596 KKL FS + LT DI E ++E+ + L A ++A+ + KSDFL+R+SH+I Sbjct: 235 KKLRFSFFDKERNILLLTRTDIMEVREEERQRQLLQDALQVAKSANQAKSDFLSRMSHDI 294 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTP+ AIIG + + R ++ I S L+L+++N++LD+SK+ESG + Sbjct: 295 RTPMNAIIGMTTI---ASMHIDDRERIVDCLKKIMVSSKLLLNLINEVLDMSKVESGHIL 351 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNA 715 L E + E + I++VQ ++K R F +++ D++ ++Q+ LN+LSNA Sbjct: 352 LTDEEFDMGELLQSVITMVQTSVSQKFQDFRVHLFQIKHEKLIGDVQRIQQVLLNLLSNA 411 Query: 716 IHFTPSGGQIIISTTH----TSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 I +TP G+I + N + + V D G+G+ L K +PF + ++ Sbjct: 412 IKYTPDYGKITLEIREKPIKNGNYGLFEITVIDNGIGIKPDFLHKVFEPFERAEDATLRN 471 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +GTGLG+ +++ + G+ + S KG++ L Sbjct: 472 IQGTGLGMAISRNIAHMMNGEILVESEYGKGSVFTFTMQL 511 >gi|307717937|ref|YP_003873469.1| histidine kinase [Spirochaeta thermophila DSM 6192] gi|306531662|gb|ADN01196.1| putative histidine kinase [Spirochaeta thermophila DSM 6192] Length = 900 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/263 (29%), Positives = 133/263 (50%), Gaps = 25/263 (9%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + +L A ++ EK + KS+FLA VSHE+RTPL AI+GF+E +K ++ +PR Sbjct: 383 EVARRTRELREANRLLEKANRAKSEFLANVSHEMRTPLHAIMGFAEALKGEQ-----DPR 437 Query: 623 YIEYANYIDRSGNLVL---------DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 +R G+L L +++++LD+ K+E GK+ L P +L E V Sbjct: 438 --------EREGHLQLLLSEAQRLKVLIDEILDVEKMEQGKLTLDESPFNLHEVVGYVCR 489 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH 731 +++ A K + + +P ++ D ++Q+ +N++ NA+ FT GG ++ + Sbjct: 490 VMEENARRKGLSFSFEIEDGVPVWVVGDPFRLQQVIMNLVGNAVKFTEEGGVRVRVGCVE 549 Query: 732 TSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 I + VRDTG+G+ EK + F Q S R G+GLG+ +A+ +V G Sbjct: 550 EGEGRWIEVEVRDTGIGIPEEMREKVFESFVQADTSTTRRYGGSGLGMTIARELVRLMGG 609 Query: 791 KFYIFSTPAKGTLIEIIFPLYDT 813 ++ S KGT + P + Sbjct: 610 DVWLESEVGKGTRVWFRIPCVEA 632 >gi|300864267|ref|ZP_07109147.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] gi|300337732|emb|CBN54293.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] Length = 677 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 134/240 (55%), Gaps = 10/240 (4%) Query: 557 TMHDISEWKQ---EKNKL---SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 T+ DI++ KQ E+ +L A+ AE+ + K +FLA +SHE+RTPL AI+G+S+++ Sbjct: 261 TIIDITDRKQAEEERGRLIGEQVARHEAERANRMKDEFLAILSHELRTPLNAILGWSKLL 320 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + ++F + +E I+R+ ++ D+LD+S+I GK+NL+ P+ L + Sbjct: 321 RAKKFDQATIDKALET---IERNAKSQAQLIEDILDVSRILRGKLNLNLHPIPLGYVIEV 377 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 AI ++ A K I I ++I +++ D ++Q+ N+LSNAI FTP GG++ + Sbjct: 378 AIDALRPLAETKSIAIEFVCISDIGQVIGDSDRLQQVVWNLLSNAIKFTPEGGKVEVRLE 437 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + I ++ DTG+G++ L F Q ++ G GLGL + + +V+ + G Sbjct: 438 LVGDYAEI-QIIDTGIGISAEFLPYVFDRFRQADSTTTRSYGGLGLGLAIVRHLVELHGG 496 >gi|224371576|ref|YP_002605740.1| BarA [Desulfobacterium autotrophicum HRM2] gi|223694293|gb|ACN17576.1| BarA [Desulfobacterium autotrophicum HRM2] Length = 941 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/230 (33%), Positives = 121/230 (52%), Gaps = 10/230 (4%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A+ S KS FLA +SHEIRTP+ ++G +E+ + L IE I SG + Sbjct: 267 AQAASKAKSQFLANMSHEIRTPMNGVLGMAEMALDMNL-TLEQQNAIET---IKSSGESL 322 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PR 696 L I+ND+LD SKIE+GK+ + +L + E ++ A+ K + + A + P Sbjct: 323 LTIINDILDFSKIEAGKLEIETINFNLPALIEEIAQILAHRAHAKGLELIVDIAETLHPD 382 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDTGVGMTNYE 752 + +D ++Q+ N+LSNAI FT G ++ + + E+V VRDTG+GMT E Sbjct: 383 MSSDPSRIRQVLTNLLSNAIKFTEQG-EVYLKVESLKDMGDSEQVRFLVRDTGIGMTAEE 441 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +K +PF Q S + GTGLGL +++ +V+ G+ P +G Sbjct: 442 RKKLFQPFSQADESTTRKYGGTGLGLAISRQLVELMDGQINCTGNPGEGA 491 >gi|157960737|ref|YP_001500771.1| Hpt sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] gi|157845737|gb|ABV86236.1| Hpt sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] Length = 1333 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 89/271 (32%), Positives = 141/271 (52%), Gaps = 14/271 (5%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 ++ T+ DI+ KQ++ +L A+ IAE + KS FLA +SHEIRTP++ I+ E++ Sbjct: 655 WTFTLVDITLLKQKQAELDEARLIAESATEAKSRFLAMMSHEIRTPISGILSLLELMV-- 712 Query: 614 RFGPLGNPRYIEYANY-IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 P N I + + SGN +L+IVND+LD SKIE+GK+ L L + E Sbjct: 713 ---PHINTHEISGIHKNLTHSGNNLLNIVNDVLDFSKIEAGKLGLSPAVCQLSSFICELA 769 Query: 673 SLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIIST-- 729 ++ K I + + L D +KQ+ N+L+NA FT + G+I +S Sbjct: 770 QPHIVHVERKGIKFKLWLDPKLAYSLTLDHLRLKQVLNNLLNNASKFT-TEGEIWLSVDL 828 Query: 730 -THTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + T E+ I V DTG+G++ ++ K PF Q+ S + R GTGLGL + + +V Sbjct: 829 ISSTDTEQTIGFAVTDTGIGISEKDITKLFIPFEQVDLSSERRFSGTGLGLSICEQLVKL 888 Query: 788 NMGKFYIFSTPAKGTLIE--IIFPLYDTSHP 816 G+ + ST +G+ + FP+ P Sbjct: 889 MGGEISVTSTQGQGSTFRFSLSFPIAAVEVP 919 >gi|59711315|ref|YP_204091.1| membrane-bound sensor histidine kinase LuxQ [Vibrio fischeri ES114] gi|59479416|gb|AAW85203.1| membrane-bound sensor histidine kinase LuxQ [Vibrio fischeri ES114] Length = 744 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 84/259 (32%), Positives = 136/259 (52%), Gaps = 14/259 (5%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T ++ E K++ K A++ AEK + KSDFLAR+SHEIRTPL I+G S ++K+ Sbjct: 344 TFSELIEAKEDSYK---AQRAAEKLAQVKSDFLARMSHEIRTPLNGILGISSLLKSSNLT 400 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + N + + G +L ++ND+LD S+IE K+ ++ P L + + ++ Sbjct: 401 REQQKQ----VNILHQGGEHLLAVLNDILDFSQIEQEKLKINSAPFKLSDVLENINAIYF 456 Query: 677 LYANEKRILIRTSFANNI-PRIL--ADLRSVKQIALNILSNAIHFTPSGG-QIIIS-TTH 731 K +L S N++ P + +D + QI N+LSNA FT G ++ +S H Sbjct: 457 PLCKNKNVLF--SIENHVNPDVFINSDQVRLTQILFNLLSNAAKFTEKGKVKLTLSLNKH 514 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 S+ + V DTGVG+ E + +PF Q S+ + G+GLGL + K ++D GK Sbjct: 515 NSDYYLQFSVDDTGVGICAEEQTRMFEPFEQSGFSESRKFGGSGLGLAIVKQLLDLLKGK 574 Query: 792 FYIFSTPAKGTLIEIIFPL 810 I ST G+ ++ P+ Sbjct: 575 ITINSTLGVGSTFSVLIPV 593 >gi|329889024|ref|ZP_08267367.1| response regulator [Brevundimonas diminuta ATCC 11568] gi|328844325|gb|EGF93889.1| response regulator [Brevundimonas diminuta ATCC 11568] Length = 1127 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 127/238 (53%), Gaps = 3/238 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ S +KSDFLA +SHE+RTPL +++ S+++ + G L + + YA I SGN +L Sbjct: 455 EQASQYKSDFLANMSHELRTPLNSLLILSKLLADNPEGTLSEDQ-VNYARTIQSSGNDLL 513 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++ND+LD+SKIE+G + E VS+ + L Q A+++ + + Sbjct: 514 ALINDILDLSKIEAGHIQARPEAVSMQRLTEDVRQLFQPVADDRGLAFDIELDAGADLME 573 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 D + ++QI N+LSNA FT S G++ +S + + + V DTG+G++ + + Sbjct: 574 TDRQRLEQILKNLLSNAFKFTES-GKVKLSISAQPGDRIAFAVSDTGIGISPEQQKGVFD 632 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP-LYDTSH 815 F Q + R GTGLGL +++ + G+ + S +G++ + P YD + Sbjct: 633 AFQQADGTISRRYGGTGLGLSISRELARLLGGRIRLESRLGEGSVFTLSLPRTYDAAQ 690 >gi|237727250|ref|ZP_04557731.1| two-component system sensor histidine kinase [Bacteroides sp. D4] gi|229434106|gb|EEO44183.1| two-component system sensor histidine kinase [Bacteroides dorei 5_1_36/D4] Length = 669 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/239 (33%), Positives = 132/239 (55%), Gaps = 12/239 (5%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK+ AE+ + K+ FLA +SHEIRTPL AI+GFS V+ + P +Y + I ++ Sbjct: 435 AKEKAEESNRLKTAFLANMSHEIRTPLNAIVGFSSVLVSDDSSPAEKA---QYCDIIQKN 491 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR--ILIRTSFA 691 +L+L ++ND+LDIS++ESGK+ +E + E A+S + Y + L T A Sbjct: 492 SDLLLHLINDILDISRMESGKIKFVWEECDVVELCQTALSTAE-YGRKTSALFLFETPVA 550 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 + + I D + +KQ+ +N+LSNA FTPSG + ++++ L V DTG G+ + Sbjct: 551 SLV--IKTDAQRLKQVLINLLSNAAKFTPSGSIKLAIAIDKQHQQLELSVSDTGCGIPSD 608 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + ++ + F ++ Q GTGLGL +++ +V+ GK ++ +G PL Sbjct: 609 KSDRVFERFEKLNEYSQ----GTGLGLAISRLIVENLGGKIWVDKDYTEGARFVFTHPL 663 >gi|218886232|ref|YP_002435553.1| response regulator receiver sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757186|gb|ACL08085.1| response regulator receiver sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 500 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 121/227 (53%), Gaps = 6/227 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K+ FL +H++R P+ I GFS ++ + GPL + + + ++ N +L +VNDL Sbjct: 260 KNRFLGMAAHDLRNPINGIRGFSRLLLDGVLGPLTDDQR-SVLGTMHQASNEMLQLVNDL 318 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD++ IESG+++L P L +E +S L A K I I FA+ + + D R + Sbjct: 319 LDVTVIESGRLDLVLAPGDLAVLAAERLSFASLAAGAKNIRIEKQFAH--AQCMFDPRRM 376 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 Q+ N+LSNA+ FTP +I ++ E + V D G G+ E E+ F ++ Sbjct: 377 AQVFDNLLSNAVKFTPPQTRISVA-VRVEGAEAVFEVADAGPGILPEERERMFHSFEKL- 434 Query: 765 NSQQIRGEG-TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +++ GE TGLGL + K +V A+ G+ ++ S P G + + PL Sbjct: 435 SARPTAGEASTGLGLTIVKRIVTAHGGRVWVESEPGNGAIFRVAVPL 481 >gi|229917679|ref|YP_002886325.1| histidine kinase [Exiguobacterium sp. AT1b] gi|229469108|gb|ACQ70880.1| histidine kinase [Exiguobacterium sp. AT1b] Length = 651 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 122/231 (52%), Gaps = 6/231 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K++ ++ VSHE+RTPLT+IIGF+E++ RF L R +Y I + + D++++L Sbjct: 423 KTELVSTVSHELRTPLTSIIGFTELL---RFRKLSAERSEKYLGMIHQETLRLEDLISNL 479 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+ ++ESG+ H EP L + +AI++ Q + I T + D + Sbjct: 480 LDVQRMESGQQTYHNEPERLSAILEQAIAVHQGSSQHHHI---TFDCTEDVYVYGDRTRL 536 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 Q+ +N+L NA+ ++P GG+I + + + + + D G+G+ L K F ++ Sbjct: 537 NQLFMNLLHNAVKYSPRGGEINVRVACERPDWIDISIEDHGIGIPQTALPKLFDKFYRVD 596 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 NS + GTGLGL + K + + + G + S KG++ + P D ++ Sbjct: 597 NSASRKIGGTGLGLAICKEIAEGHGGTIHATSNIGKGSMFTVSLPKLDMTN 647 >gi|77459262|ref|YP_348769.1| histidine kinase [Pseudomonas fluorescens Pf0-1] gi|77383265|gb|ABA74778.1| histidine kinase [Pseudomonas fluorescens Pf0-1] Length = 1053 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/257 (29%), Positives = 129/257 (50%), Gaps = 10/257 (3%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + +HD++ ++ L A++ A+ + KS FLA +SHEIRTPL ++G E++ Sbjct: 451 WLCALHDVTRHVEDSAALEVARQAADSANQAKSRFLATISHEIRTPLYGVLGTLELLGLT 510 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 PR EY I RS + +++D+LD+SKIE+G+MNL +P E + + Sbjct: 511 ALA----PRQQEYLETIQRSSASLFKLISDVLDVSKIEAGQMNLELQPFCPLELTEDVVR 566 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-- 730 +A K + + +P +L D + ++QI N+LSNAI FT +G ++ Sbjct: 567 SYGAFARGKGLQLYACIDAALPDHLLGDAQRIRQILNNLLSNAIKFTDNGRVVVRVRVLQ 626 Query: 731 -HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 V +V D+GVG++ + ++ PF Q+ + G GLGL + K + + Sbjct: 627 NSGGQARVQWQVSDSGVGISQAQQQQLFDPFYQVNEADS--HAGAGLGLAICKWLCELMH 684 Query: 790 GKFYIFSTPAKGTLIEI 806 G+ + S P G+ + Sbjct: 685 GQLNVVSEPGLGSCFNL 701 >gi|303327577|ref|ZP_07358018.1| sensory box histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] gi|302862517|gb|EFL85450.1| sensory box histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] Length = 780 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/233 (32%), Positives = 130/233 (55%), Gaps = 12/233 (5%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K+DFL+++SH+IRTPL AI+G +++ + P G E I SG +L+++N++ Sbjct: 276 KTDFLSQMSHDIRTPLNAILGMADIAGTRLDDPRGAG---ECLKKIQASGRHLLNLINEV 332 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR--ILIRTSFANNIPRILADLR 702 LD+SKIESG+M L E + L E V + + EK + +R + A+ R+ D Sbjct: 333 LDMSKIESGQMRLAAEDMELAELVRNVLDVCGSLLKEKGHVLTVRANVAHE--RVRGDSG 390 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEVIL---RVRDTGVGMTNYELEKAM 757 ++Q+ N+LSNA +TP+GG I S + N +V L + D G+GM+ ++ Sbjct: 391 RLQQLFTNLLSNAAKYTPAGGSIAFSIDELPSLNTDVGLFECVIADNGIGMSEDFVKHLF 450 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +PF + + + + +GTGLGL +++++V G + S P +G+ + PL Sbjct: 451 EPFKRADDPRICKIQGTGLGLVISRSIVRLMGGGIKVESRPEEGSRFIVSLPL 503 >gi|324328480|gb|ADY23740.1| phosphate regulon sensor protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 587 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 96/376 (25%), Positives = 181/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ L + + + + P Sbjct: 240 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEEYLDRLY--YESFHHPE 297 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 ++ + +E+I + K K + L + I++ F Sbjct: 298 II-------------ELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 344 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 345 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 388 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + + + Sbjct: 389 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHM 447 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+GG + + Sbjct: 448 VLDNKAGEKEISLQVNTLKRVS-VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDK 506 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 507 YNAYI-KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 565 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 566 VDSEVGEGTTFTVVLP 581 >gi|315125702|ref|YP_004067705.1| sensory box histidine kinase/response regulator [Pseudoalteromonas sp. SM9913] gi|315014216|gb|ADT67554.1| sensory box histidine kinase/response regulator [Pseudoalteromonas sp. SM9913] Length = 927 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 125/242 (51%), Gaps = 13/242 (5%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A K S K+ FLA +SHEIRTP+ +IG ++++ G + + + I S + Sbjct: 273 ALKASETKTTFLATMSHEIRTPMNGVIGTIDLLRQTELD--GAQQRL--STIIRESAFSL 328 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696 L I++D+LD SKIE+GK+N+ P S+ + + E ++ A + + + S A +IP Sbjct: 329 LSILDDILDFSKIEAGKLNIDPTPFSVADTLEEVAKVLSSVAKNRHLELDLSIAPDIPNN 388 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGG------QIIISTTHTSNEEVILR--VRDTGVGM 748 ++ D V+Q+ N+ SNAI FT + G +I + H + + LR V D G GM Sbjct: 389 LMGDSVRVRQVLYNLCSNAIKFTSTNGSTQGRVKISVEVAHNTADHFTLRFCVVDNGKGM 448 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + +L K PF Q +S GTGLGL + K++ + +G ++ S G+ + Sbjct: 449 SQSQLRKIFSPFTQAESSITREFGGTGLGLSICKSLTELMLGTIHVTSHEGIGSEFTVEL 508 Query: 809 PL 810 P Sbjct: 509 PF 510 >gi|71908400|ref|YP_285987.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71848021|gb|AAZ47517.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 909 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/257 (31%), Positives = 135/257 (52%), Gaps = 10/257 (3%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D+ + + ++ +L AK AE+ + KS FLA +SHEIRTP+ IIG ++++ G Sbjct: 247 LEDVVQLRTQELRL--AKDNAEQANRAKSAFLANMSHEIRTPMNGIIGVADLLAA---GS 301 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 L N + S + +L ++ND+LD S+IE+G + L P S+ E + + IS+ Sbjct: 302 L-NAHQQNQLTTLRSSADTLLYLLNDILDFSRIEAGGLQLEKLPFSIRETIEQVISVFSP 360 Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE 735 A ++ + + ++P I+ D + Q+ N+L+NA+ FT SG +I + N Sbjct: 361 TARKRHLDLWFDIEPSLPDYIVGDRYRLGQVITNLLNNALKFTESGSVRISCRSQQDKNG 420 Query: 736 E--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + +++ + DTG+G+ L PF Q NS R G+GLGL + +V G+ Sbjct: 421 QNRLLIEITDTGIGIIAQALADIFSPFRQADNSMSRRFGGSGLGLAIVHDLVALMEGEIT 480 Query: 794 IFSTPAKGTLIEIIFPL 810 STP +G+ I PL Sbjct: 481 AKSTPGRGSTFSIDLPL 497 >gi|221196442|ref|ZP_03569489.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans CGD2M] gi|221203114|ref|ZP_03576133.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans CGD2] gi|221177048|gb|EEE09476.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans CGD2] gi|221182996|gb|EEE15396.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans CGD2M] Length = 653 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 117/237 (49%), Gaps = 6/237 (2%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A+ A+ + K + LA VSHE+RTPL I G+ EV+++ G + + IDRS Sbjct: 266 ARVQADTANRLKDELLATVSHELRTPLNVIYGWVEVLRSVD----GQGFAQQAVDAIDRS 321 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 + +V DLLD S + +GK+ L PV + V +A A+ K I + T A Sbjct: 322 ARSLARMVGDLLDASSLATGKLRLERTPVDVARVVHDAAREFGAPAHAKGITLVTEGAGT 381 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 I AD + Q+ N+LSNAI FTPSGG+I++S + V L V DTG GM L Sbjct: 382 ACVISADAERLHQVLSNLLSNAIKFTPSGGRIVVSLARV-DAHVSLSVADTGQGMAPEAL 440 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809 PF + N+ G GLGL + + + + + G S P +G + + P Sbjct: 441 PHLFDPFNRPANAPASPQRGLGLGLSIVRNIAELHGGSVEAASEGPGRGLTVTVTLP 497 >gi|222527313|ref|YP_002571784.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|222451192|gb|ACM55458.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 1209 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 117/218 (53%), Gaps = 1/218 (0%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K++F+A VSHE+RTPLT+I G ++ G L PR + ++ ++ ++ND+ Sbjct: 717 KNEFVAVVSHELRTPLTSIRGSLGLLAGGVVGEL-PPRAASMIDIALKNSERLIRLINDI 775 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LDI KIESGKM F+PV LDE V + I + + + + I + ++ D + Sbjct: 776 LDIEKIESGKMVFKFQPVVLDELVRQTIEANRGFGQQYDVAIELTATLPGVQVYVDPDRI 835 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 Q+ N++SNAI F+P GG++ ++ + + V D G G+ ++ + F Q Sbjct: 836 AQVITNLISNAIKFSPPGGKVEVAIGREPRGRIRITVTDHGPGIPVEFRDRIFQKFAQAD 895 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +S R GTGLGL +++A+V+ + G+ + GT Sbjct: 896 SSNTRRQGGTGLGLSISRAIVERHGGQIGFVTASGVGT 933 >gi|83310209|ref|YP_420473.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82945050|dbj|BAE49914.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 976 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 16/224 (7%) Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 +FLA +SHEIRTP+ AI+G ++ + PL + +YA + SG ++L I+ND+LD Sbjct: 465 EFLAVMSHEIRTPMNAILGMIRLLLDS---PLDETQR-DYAETVLSSGEVLLSILNDILD 520 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVK 705 +S+IE+GK+ L L + V I L+ A EK + +R+ A +P R+ D ++ Sbjct: 521 LSRIEAGKLELERIAFDLPKVVDSIIHLMTPRAREKSLALRSWTAGGVPARLTGDPTRLR 580 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE-------EVILRVRDTGVGMTNYELEKAMK 758 Q+ LN+LSNAI FT +G + H S E + + V+DTG+G++ + Sbjct: 581 QVLLNLLSNAIKFTEAGE----VSLHLSAEIQPDGIAAIRMEVKDTGIGISPEARSRLFA 636 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 F Q S R GTGLGL + + +V G+ + S P +G+ Sbjct: 637 NFAQADASITRRFGGTGLGLAICQNLVRLMNGEIGVDSVPGQGS 680 >gi|253565261|ref|ZP_04842716.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|251945540|gb|EES85947.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] Length = 899 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 86/286 (30%), Positives = 137/286 (47%), Gaps = 14/286 (4%) Query: 528 ITLGSTKEEKLLSL---RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 I G K LL L +I+++ FS DI++ + + +L +K+ AE Sbjct: 452 IMEGKDKNGNLLILDKQKIMVESEDFSPIIVSIEWDITQLELMRRELIESKEKAETSDKL 511 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTPL AI+GFS +I EY +D + +L ++N++ Sbjct: 512 KSAFLANMSHEIRTPLNAIVGFSRIISESD----NAEERREYYEIVDANNERLLQLINEI 567 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+SKIESG + + PV L E I ++ + + +R + I +D + Sbjct: 568 LDLSKIESGIVEFTYGPVRLHTLCKE-IHDAHVFRCPQGVELRFDSPDEALSIHSDKNRI 626 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 Q+ N++ NA FT G + E V+ V+DTG+G+ +L + + F ++ Sbjct: 627 FQVFSNLIGNAFKFTTEGS--VSYGYKQEGERVVFYVKDTGLGIEPEKLGRVFQRFAKLN 684 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 N Q GTGLGL + K +++ G+ + S GT PL Sbjct: 685 NFAQ----GTGLGLSICKTIIERLGGEIAVSSEVGTGTTFTFWLPL 726 >gi|298530456|ref|ZP_07017858.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509830|gb|EFI33734.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1033 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/261 (32%), Positives = 139/261 (53%), Gaps = 16/261 (6%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DI++ K+++ +L AK+ AE S KS+FLA +SHEIRTP+ I+G E++ + R Sbjct: 496 LRDITQRKKDEIELIVAKEQAEAASKAKSEFLANMSHEIRTPMAGIMGALEMV-SARTDD 554 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISL 674 + R ++ RS + I+ND+LD+SK+E+GK+ + F+P SL + V + L Sbjct: 555 EESRRLMKMTLESARS---LQQIINDILDLSKVEAGKLEIEHQEFDPQSLFKRV---MDL 608 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST---- 729 + A EK I ++ A IPR L D ++Q+ N++SNA+ FT S G++I+ Sbjct: 609 YSIQAGEKNIELQLDTAPGIPRRLCGDQYRLEQVLRNLVSNAVKFT-SQGRVILRVRPVQ 667 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + + V DTGVG+ L + F Q ++ + +GTGLGL ++ +V Sbjct: 668 AASGKARLNFEVEDTGVGIKEDFLPRLFDSFTQADSTYGKKHQGTGLGLAISNRLVQMMG 727 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G S P G++ P Sbjct: 728 GDIQAQSIPGAGSIFSFSLPF 748 >gi|53713284|ref|YP_099276.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|52216149|dbj|BAD48742.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] Length = 899 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 86/286 (30%), Positives = 137/286 (47%), Gaps = 14/286 (4%) Query: 528 ITLGSTKEEKLLSL---RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 I G K LL L +I+++ FS DI++ + + +L +K+ AE Sbjct: 452 IMEGKDKNGNLLILDKQKIMVESEDFSPIIVSIEWDITQLELMRRELIESKEKAETSDKL 511 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTPL AI+GFS +I EY +D + +L ++N++ Sbjct: 512 KSAFLANMSHEIRTPLNAIVGFSRIISESD----NAEERREYYEIVDANNERLLQLINEI 567 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+SKIESG + + PV L E I ++ + + +R + I +D + Sbjct: 568 LDLSKIESGIVEFTYGPVRLHTLCKE-IHDAHVFRCPQGVELRFDSPDEALSIHSDKNRI 626 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 Q+ N++ NA FT G + E V+ V+DTG+G+ +L + + F ++ Sbjct: 627 FQVFSNLIGNAFKFTTEGS--VSYGYKQEGERVVFYVKDTGLGIEPEKLGRVFQRFAKLN 684 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 N Q GTGLGL + K +++ G+ + S GT PL Sbjct: 685 NFAQ----GTGLGLSICKTIIERLGGEIAVSSEVGTGTTFTFWLPL 726 >gi|301163089|emb|CBW22638.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis 638R] Length = 892 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 86/286 (30%), Positives = 137/286 (47%), Gaps = 14/286 (4%) Query: 528 ITLGSTKEEKLLSL---RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 I G K LL L +I+++ FS DI++ + + +L +K+ AE Sbjct: 452 IMEGKDKNGNLLILDKQKIMVESEDFSPIIVSIEWDITQLELMRRELIESKEKAETSDKL 511 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTPL AI+GFS +I EY +D + +L ++N++ Sbjct: 512 KSAFLANMSHEIRTPLNAIVGFSRIISESD----NAEERREYYEIVDANNERLLQLINEI 567 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+SKIESG + + PV L E I ++ + + +R + I +D + Sbjct: 568 LDLSKIESGIVEFTYGPVRLHTLCKE-IHDAHVFRCPQGVELRFDSPDEALSIHSDKNRI 626 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 Q+ N++ NA FT G + E V+ V+DTG+G+ +L + + F ++ Sbjct: 627 FQVFSNLIGNAFKFTTEGS--VSYGYKQEGERVVFYVKDTGLGIEPEKLGRVFQRFAKLN 684 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 N Q GTGLGL + K +++ G+ + S GT PL Sbjct: 685 NFAQ----GTGLGLSICKTIIERLGGEIAVSSEVGTGTTFTFWLPL 726 >gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1] gi|300075808|gb|ADJ65207.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1] Length = 765 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 86/270 (31%), Positives = 139/270 (51%), Gaps = 24/270 (8%) Query: 564 WKQEKNKLSHA------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 W+Q + + A K+ A+ + KS FLA VSHEIRTP+ I+G SE++ Sbjct: 321 WRQVRRREEDALLATRLKEEADHANEAKSHFLAMVSHEIRTPMNGILGLSELLMESGL-- 378 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISL 674 + + +YA+ I + ++ I+ND+LD SKIESGK++L F PV L + +S+ + Sbjct: 379 --SSKQRDYADSIHGATGGLVRIINDILDFSKIESGKLDLEMVAFHPVRLVQELSD-LYR 435 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 L + + + N+ ++ D +KQ+ N+LSNAI FT G + +S + + Sbjct: 436 PSLQRKDVQFDLHLDCPENL-SVVGDPARLKQVLGNLLSNAIKFT-QAGHVQLSMSARQD 493 Query: 735 E------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 E + + DTG+G++ L++ +PF Q +S R GTGLGL ++K +V+ Sbjct: 494 ESGPSRWRLFFAITDTGIGISPEALQQLFRPFAQADSSISRRFGGTGLGLAISKNLVELM 553 Query: 789 MGKFYIFSTPAKGTL--IEIIFPLYDTSHP 816 G S P + T EI+ P T P Sbjct: 554 GGTIACQSIPGESTRFSFEILCPEASTPAP 583 >gi|265763357|ref|ZP_06091925.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263255965|gb|EEZ27311.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] Length = 899 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 86/286 (30%), Positives = 137/286 (47%), Gaps = 14/286 (4%) Query: 528 ITLGSTKEEKLLSL---RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 I G K LL L +I+++ FS DI++ + + +L +K+ AE Sbjct: 452 IMEGKDKNGNLLILDKQKIMVESEDFSPIIVSIEWDITQLELMRRELIESKEKAETSDKL 511 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTPL AI+GFS +I EY +D + +L ++N++ Sbjct: 512 KSAFLANMSHEIRTPLNAIVGFSRIISESD----NAEERREYYEIVDANNERLLQLINEI 567 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+SKIESG + + PV L E I ++ + + +R + I +D + Sbjct: 568 LDLSKIESGIVEFTYGPVRLHTLCKE-IHDAHVFRCPQGVELRFDSPDEALSIHSDKNRI 626 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 Q+ N++ NA FT G + E V+ V+DTG+G+ +L + + F ++ Sbjct: 627 FQVFSNLIGNAFKFTTEGS--VSYGYKQEGERVVFYVKDTGLGIEPEKLGRVFQRFAKLN 684 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 N Q GTGLGL + K +++ G+ + S GT PL Sbjct: 685 NFAQ----GTGLGLSICKTIIERLGGEIAVSSEVGTGTTFTFWLPL 726 >gi|163849319|ref|YP_001637363.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|163670608|gb|ABY36974.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] Length = 1209 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 117/218 (53%), Gaps = 1/218 (0%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K++F+A VSHE+RTPLT+I G ++ G L PR + ++ ++ ++ND+ Sbjct: 717 KNEFVAVVSHELRTPLTSIRGSLGLLAGGVVGEL-PPRAASMIDIALKNSERLIRLINDI 775 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LDI KIESGKM F+PV LDE V + I + + + + I + ++ D + Sbjct: 776 LDIEKIESGKMVFKFQPVVLDELVRQTIEANRGFGQQYDVAIELTATLPGVQVYVDPDRI 835 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 Q+ N++SNAI F+P GG++ ++ + + V D G G+ ++ + F Q Sbjct: 836 AQVITNLISNAIKFSPPGGKVEVAIGREPRGRIRITVTDHGPGIPVEFRDRIFQKFAQAD 895 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +S R GTGLGL +++A+V+ + G+ + GT Sbjct: 896 SSNTRRQGGTGLGLSISRAIVERHGGQIGFVTASGVGT 933 >gi|158334667|ref|YP_001515839.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158304908|gb|ABW26525.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] Length = 929 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/267 (28%), Positives = 137/267 (51%), Gaps = 26/267 (9%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++L +K+ AE + KS FLA +SHE+RTPL AI+GFS+++ + P+ + Sbjct: 405 HQLQRSKEKAEAANRAKSAFLANMSHELRTPLNAILGFSQLLNRDKN---LTPKQKQTLT 461 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+RSG+ +L+++ND+L++SKIE+G+++L+F+ L + + L K + + Sbjct: 462 SINRSGSHLLNLINDVLEMSKIEAGRVSLNFKNCDLMSLLDSIQEMFLLKVESKGLKLLV 521 Query: 689 SFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQII--------------------- 726 A ++ P I D ++Q+ +N+L+NA+ FT G + Sbjct: 522 DKALDLPPYIRTDESRLRQVLINVLTNALKFTEQGSVALKVYTQPLRSPNLVPTHDDGNA 581 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 ++ H N + + V DTGVG++ E+ + F Q + EG GLGL + + ++ Sbjct: 582 VTEEHQPNIYLCIDVEDTGVGISASEMGNLFETFTQASAGRN-STEGAGLGLAICQHCIE 640 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDT 813 G I S +GT ++I P+ T Sbjct: 641 LMGGNILIDSKEGQGTTVQIKVPVMAT 667 >gi|241664378|ref|YP_002982738.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D] gi|240866405|gb|ACS64066.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D] Length = 652 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 97/358 (27%), Positives = 163/358 (45%), Gaps = 35/358 (9%) Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530 +GI+ + N A + GY EDIL K + Q + + ++ LE++ Sbjct: 161 QGIVRTWNAASRSILGYAREDILGKSAEILYPQAARE----------AGEFQRKLERV-- 208 Query: 531 GSTKEEKLLSLRIIIKK--LPFSSC---------------YSLTMHDISEWKQEKNKLSH 573 +E L R +++K PF + +S + D +E + + L Sbjct: 209 --RREGSLTDDRWMLRKDGTPFYASSVVTAIHNETGQLVGFSKIIRDSTEERIAADALRR 266 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK+ AE + K FLA +SHE+RTPLT I+ +++ ++ P +E + R+ Sbjct: 267 AKEEAETANHAKDHFLAVLSHELRTPLTPILTAVHLLELRQDLPAYAVAQLE---VVRRN 323 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 L +++DLLDI+ I GK+ + F V L + + + + KR+ ++T F Sbjct: 324 AELEARLIDDLLDITGIARGKLAVSFALVDLYPLLESTLEISRNDMQAKRLSLKTRFEAG 383 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 R+ AD ++Q+ N++ NA+ FTP GG I + + S V + V+D G+G+ L Sbjct: 384 RSRLYADGARIQQVIWNLVRNAVKFTPEGGAIEVRVWNPSASTVAVSVKDNGIGIEPDAL 443 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA-KGTLIEIIFPL 810 + F Q S R G GLGL +A A+V + G S +G + PL Sbjct: 444 PRIFSAFEQADASITQRFGGLGLGLAIAYALVQKHEGSLIAESAGRHEGATFTLTLPL 501 >gi|3320466|gb|AAC82662.1| RcsC [Proteus mirabilis] Length = 507 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 11/262 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS + + L + AE+ + KS FLA VSHE+RTPL IIG E++++ Sbjct: 16 DISARVKMERSLQNMATAAEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSLT----Q 71 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N +D S +L+L I++D+LD SKIES ++ + +P + + VS IS Sbjct: 72 NEETARLLKTMDNSSSLLLKIISDILDFSKIESKQLKIDVKPFNCRQVVSFVISNYLPLI 131 Query: 680 NEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +K + I ++P+I+ D V+Q+ N+L+N+I FT +G T H +E Sbjct: 132 AKKDLAIYCFIEPDVPKIVNNDPVRVQQVISNLLNNSIKFTTTG----CITLHLYRDEYY 187 Query: 739 LR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 L + DTG G+ L + +PF Q+ + + EGTGLGL + + +++ G + S Sbjct: 188 LYFDIHDTGRGINEKMLHQLFEPFFQVSQNTESASEGTGLGLAICEKLINLMDGDISVVS 247 Query: 797 TPAKGTLIEIIFPLYDTSHPHD 818 G+ + PLY + D Sbjct: 248 QENVGSRFTVRIPLYGALNSSD 269 >gi|88857621|ref|ZP_01132264.1| putative signal transduction histidine kinase two-component system with Protein-glutamate methylesterase domain [Pseudoalteromonas tunicata D2] gi|88820818|gb|EAR30630.1| putative signal transduction histidine kinase two-component system with Protein-glutamate methylesterase domain [Pseudoalteromonas tunicata D2] Length = 927 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 131/255 (51%), Gaps = 9/255 (3%) Query: 559 HDIS-EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 H+++ E +++ +L+ + IAE+ + KS FLA +SHEIRTP+ ++G ++ Q P Sbjct: 536 HELAIEVERKTFELTQSVHIAEQANKAKSIFLANMSHEIRTPMNGMMGMLSIVLKQ---P 592 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 NP ++ I S ++ I+ND+LD SKIE+G++ + PV L E+ + + Sbjct: 593 SLNPDVVDKLQLIQSSAQTLMQILNDILDFSKIEAGQLTIEQAPVDLKAVFKESCDIFLM 652 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 + + + R N+P ++L D ++QI +N+L+NA FTP G I + +EE Sbjct: 653 SSIKPNVEFRLEGIENLPDQLLCDALRLRQIIVNLLTNAGKFTPCGH---IKVLVSYDEE 709 Query: 737 VI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V DTG+G+ + F Q S + GTGLGL + +V G + Sbjct: 710 YLRFSVADTGIGIAKEKQALLFNEFSQADVSTTRKYGGTGLGLAICSRLVTLLEGNIELQ 769 Query: 796 STPAKGTLIEIIFPL 810 S KG+ + P+ Sbjct: 770 SEEGKGSCFTVSLPM 784 >gi|288941101|ref|YP_003443341.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288896473|gb|ADC62309.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 970 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 125/236 (52%), Gaps = 7/236 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A++ AE + KS FLA +SHEIRTP+ A++GF ++ +R + + Sbjct: 363 ELMAAREQAEAANQAKSVFLATMSHEIRTPMNAVLGFCNLLYRRRL----DAESHDLVRK 418 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG L+L+++ D+LD S+IE+ ++ + P L + + ++++ A K + + + Sbjct: 419 IQVSGALLLNLIEDILDFSRIEANRLEIAASPFDLRRVLEDLAAIMETEAGRKGLELEIA 478 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGV 746 + ++ D R +KQ+ L +L+NA+ FT G +I + EV LR VRD+G+ Sbjct: 479 PLPEVNDLIGDERRLKQVLLKLLANAVKFTEQGRVEIRVDLESEDMREVRLRFSVRDSGI 538 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+ + F Q S R GTGLGL +++ +V A G+ + S +G+ Sbjct: 539 GIAPAQQAAIFSAFNQADGSISRRFGGTGLGLAISQQLVHAMGGRLQVTSELGRGS 594 >gi|254506571|ref|ZP_05118712.1| TMAO reductase sytem sensor TorS [Vibrio parahaemolyticus 16] gi|219550444|gb|EED27428.1| TMAO reductase sytem sensor TorS [Vibrio parahaemolyticus 16] Length = 957 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 129/241 (53%), Gaps = 7/241 (2%) Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 + A+ AE+ S KS FLA +SHEIRTP+ ++G + ++K++ N + Y + I+ Sbjct: 457 AQARLQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLKDEGL----NSQQSRYVDVIN 512 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 RSG+ +L I+ND+LD SKIE+G + + + +L V + L+ A EK++ + Sbjct: 513 RSGSTLLAILNDVLDYSKIEAGHLEIRTKDFNLKAMVEDVEQLLSGRAAEKQLELSALIE 572 Query: 692 NNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMT 749 +++ D+ + Q+ N++ NAI FT SG I ++ V+ V D+G+G++ Sbjct: 573 SDVTTFWKGDVTRISQVLNNLVGNAIKFTDSGHVDIYVANDPERAGHVLFEVSDSGIGIS 632 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 E + F Q +G GTGLGL ++K +V+A G+ + S KG+ P Sbjct: 633 PKEQKNLFDAFTQASGGLSSKG-GTGLGLAISKKIVEAMGGELQVDSDLGKGSRFWFSIP 691 Query: 810 L 810 L Sbjct: 692 L 692 >gi|160938607|ref|ZP_02085959.1| hypothetical protein CLOBOL_03502 [Clostridium bolteae ATCC BAA-613] gi|158438306|gb|EDP16065.1| hypothetical protein CLOBOL_03502 [Clostridium bolteae ATCC BAA-613] Length = 738 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/251 (30%), Positives = 129/251 (51%), Gaps = 12/251 (4%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 ++ +L A A+K K +FL+ +SHEIRTPL+ IIG +++ L + IE Sbjct: 211 QEQELKDALNNAQKAFKVKKEFLSCMSHEIRTPLSIIIGMTKIAATH----LDDSNRIED 266 Query: 627 A-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + I S ++ I+ND+LD+SKIE GK++++ EP L + + ++ + A E+ + Sbjct: 267 CLSKITFSSRHLMTIINDVLDMSKIEEGKLSVNHEPFQLQQLLEPLVATIYAQAEEQGLK 326 Query: 686 IRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVIL 739 N+P + D + QI LN+LSN+I FTP GG + + + Sbjct: 327 FECGI-KNVPEAVYIGDCMRINQILLNLLSNSIKFTPKGGVVHLEVNPAPVVDGKTHLQF 385 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 +DTG+GM++ L++ KPF Q + + GTGLG+ + +V G + S Sbjct: 386 ITKDTGIGMSDEYLKRIFKPFEQADSGTSRKYGGTGLGMAITYNLVKLLGGSIQVESKLG 445 Query: 800 KGTLIEIIFPL 810 +GT ++ P+ Sbjct: 446 EGTTCTVVLPV 456 >gi|325262230|ref|ZP_08128968.1| sensor histidine kinase/response regulator [Clostridium sp. D5] gi|324033684|gb|EGB94961.1| sensor histidine kinase/response regulator [Clostridium sp. D5] Length = 932 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 84/239 (35%), Positives = 128/239 (53%), Gaps = 14/239 (5%) Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 K ++ KSDFL+R+SH++RTP+ AIIGF+ I + P E I SG+ + Sbjct: 548 KANAAKSDFLSRMSHDMRTPMNAIIGFAH-IGIESHDP---DESAECLQKIKASGHYLEG 603 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL--IRTSFANNIPRI 697 ++ND+LD+SKIE GK+ LH EP E +++ A +K ++ +R S + Sbjct: 604 LINDVLDMSKIEEGKLELHPEPYYYTEFEETIRTILMQKAQQKGVMFVMRNSVKVHSAVA 663 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EVILRVRDTGVGMT-NY 751 L LR+ +Q+ +N++ NAI FTP GG++ S T + E + VRD G+GM+ + Sbjct: 664 LDKLRT-QQVFVNLIGNAIKFTPRGGRVEFSVTAQAAEPDGTLPLTFIVRDNGIGMSEEF 722 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI-IFP 809 + K F Q NS GTGLGL +AK +V+ G S KGT + ++P Sbjct: 723 QKSKLFHSFEQEHNSVLQVEAGTGLGLSIAKQLVNQMGGSIECQSELGKGTAFTVKLYP 781 >gi|188494704|ref|ZP_03001974.1| signal transduction histidine-protein kinase AtoS [Escherichia coli 53638] gi|188489903|gb|EDU65006.1| signal transduction histidine-protein kinase AtoS [Escherichia coli 53638] Length = 514 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 188/398 (47%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 135 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 194 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 195 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 247 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 248 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 302 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q P+ + EY + + + + + ++ LL+ S+ Sbjct: 303 AHEVRNPLTAIRGYVQILRQQTSDPI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 358 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 359 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL 414 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 415 INAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFF------TTKAS 468 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 469 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 506 >gi|75907786|ref|YP_322082.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75701511|gb|ABA21187.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1550 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 84/263 (31%), Positives = 139/263 (52%), Gaps = 14/263 (5%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 +++ +L A+ AE S KS FLA +SHEIRTP+ A++G + ++ L N + Sbjct: 872 RQRQELEVARSQAELASHAKSAFLANMSHEIRTPMNAVLGMTGLM----LETLLNQEQRD 927 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + I SG+ +L ++N++LD+SK+E+G+M L +L V E + L+ A+ K + Sbjct: 928 FMETIRISGDALLTLINEILDLSKLEAGEMALENLNFNLSTCVEEVLDLLAPQAHSKGLE 987 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST---THTSNEEVI-LR 740 I ++P ++ D ++QI +N++ NAI FT S G++++ + T +I Sbjct: 988 IAALIYRHVPIQLQGDASRLRQILMNLIGNAIKFT-SFGEVVMRVELRSETPTTAIIHFA 1046 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D+G+G+T + K PF Q+ S + GTGLGL + K +V G+ + S K Sbjct: 1047 VTDSGLGITLEDQHKLFTPFTQVDASTTRKYGGTGLGLAICKQLVTLMGGEIGVESQLGK 1106 Query: 801 GT--LIEIIFP--LYDTSHPHDC 819 G+ EI F L S DC Sbjct: 1107 GSKFWFEIPFAKQLQPVSFVEDC 1129 >gi|303258394|ref|ZP_07344397.1| probable hybrid sensory kinase [Burkholderiales bacterium 1_1_47] gi|302858840|gb|EFL81928.1| probable hybrid sensory kinase [Burkholderiales bacterium 1_1_47] Length = 863 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 84/263 (31%), Positives = 135/263 (51%), Gaps = 14/263 (5%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +++ D +E + L+ A A+ S KSDFL+ +SHEIRTP+ AIIG + + Sbjct: 319 VSLFDETEQIAYQRNLADALTTAKNASQAKSDFLSHMSHEIRTPMNAIIGMTTI----AL 374 Query: 616 GPLGNPRYIE--YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + + + +E + S +L L ++ND+LD+SKIES K+ L +E L E V + Sbjct: 375 SRISDKQKVEDCLKKTLLASRHL-LGLINDILDMSKIESNKLALSYEKFDLQETVHSIYN 433 Query: 674 LVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQII--IST 729 L++ A EK + N++ + ++ D V Q+ +N+++NA+ FTP GG++ +S Sbjct: 434 LIEPQAKEKGVSFEI-VTNDVNQECLVGDQLRVNQVFINVIANAVKFTPRGGKVTMKLSE 492 Query: 730 THTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 TS E + LR + D G+GM L + PF Q GTGLGL + +V+ Sbjct: 493 KQTSPEHIHLRCIISDNGIGMKKDFLSRVFLPFEQETAEIAQHFGGTGLGLAITHNLVNL 552 Query: 788 NMGKFYIFSTPAKGTLIEIIFPL 810 G + S KG+ I P Sbjct: 553 MGGNIDVQSEEGKGSTFTIDLPF 575 >gi|262369862|ref|ZP_06063189.1| sensor protein gacS [Acinetobacter johnsonii SH046] gi|262314901|gb|EEY95941.1| sensor protein gacS [Acinetobacter johnsonii SH046] Length = 937 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 128/224 (57%), Gaps = 9/224 (4%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ A S KS FLA +SHE+RTPL +I GF ++ Q L N + + Y I + Sbjct: 277 QARDQAISASQSKSVFLANISHELRTPLNSIDGFIHLLLRQ--DNLNNDQNL-YLQTIRK 333 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 S +L ++ND+LD SKI++GK+ L L+EA+ + + ++ A +K I + +A+ Sbjct: 334 SSAHLLALINDVLDFSKIDAGKIELDTATFDLEEAIFDVMDMLSPLAAQKHIDMAFYYAD 393 Query: 693 NIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--EVILR--VRDTGVG 747 N+P+ ++ D KQI N++SNAI FTP G+II+ ++ + +L V+D+G+G Sbjct: 394 NVPKHVVGDALRFKQILTNLISNAIKFTPD-GEIIVRARMEQDDIGQCLLHFSVQDSGIG 452 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 ++ + +K + F Q S + GTGLGL ++K +V G+ Sbjct: 453 LSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMQGQ 496 >gi|160937188|ref|ZP_02084550.1| hypothetical protein CLOBOL_02078 [Clostridium bolteae ATCC BAA-613] gi|158439752|gb|EDP17501.1| hypothetical protein CLOBOL_02078 [Clostridium bolteae ATCC BAA-613] Length = 1236 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 125/250 (50%), Gaps = 14/250 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ K L A +AE+ + KSDFL+ +SH+IRTP+ AI+G + + + L + Sbjct: 837 RRSKETLEQALALAEEANRAKSDFLSSMSHDIRTPMNAIMGMTTLARAH----LDEREKV 892 Query: 625 EYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 E I S +L ++ND+LD+SKIE K+ L+ + V L + + + S++ A E Sbjct: 893 ENCLRKITLSSRHLLSLINDILDMSKIEQSKITLNNDKVFLSDLLEQLYSIIGQQAQEAG 952 Query: 684 ILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN------EE 736 + +N I P D + QI +NIL NA+ FTP GG + T Sbjct: 953 LQFDVRTSNIIHPYFYGDALRINQILINILGNAVKFTPDGGTVTFLTEELPTIKGPGYVR 1012 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +RDTG+GM L +PF + N++ + EG+GLGL + K +++ G+ + S Sbjct: 1013 YCFTIRDTGIGMPESFLSHLFEPFTRNRNTEHV--EGSGLGLSITKGLIELMGGELLVES 1070 Query: 797 TPAKGTLIEI 806 GT + Sbjct: 1071 RERAGTTFRV 1080 >gi|163848580|ref|YP_001636624.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222526515|ref|YP_002570986.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163669869|gb|ABY36235.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222450394|gb|ACM54660.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 726 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 70/247 (28%), Positives = 131/247 (53%), Gaps = 15/247 (6%) Query: 576 KIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 + E+ES K +F+ VSHE+RTPLT+I+G++E++ N++ + R E+ + Sbjct: 473 RTRERESDRLKDEFIGIVSHELRTPLTSILGYTEILLNRQDLDYESQR--EFLQTVSNEA 530 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 + +V DLLD+S++E+G + L+ V L + + E + ++LI + Sbjct: 531 ERLFKMVKDLLDVSRLEAGVVKLNRWAVGLWQVIEELTLQLHTQLIHHKLLIDAR--TPL 588 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIIS----------TTHTSNEEVILRVRDT 744 P + AD VKQI N+LSNAI ++P G +I ++ TH + +++ VRD Sbjct: 589 PPVFADRDKVKQIIFNLLSNAIKYSPEGSEIQLTVRRANADDLPATHPPGQWMLIVVRDE 648 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + + F ++ NS + G GLGL +++ +V+ + G+ ++ S G+ Sbjct: 649 GIGIKPEDQARLFERFQRVDNSNTRQKSGVGLGLYISRLLVELHGGRIWVKSVEGSGSSF 708 Query: 805 EIIFPLY 811 P++ Sbjct: 709 SFTLPIW 715 >gi|168704693|ref|ZP_02736970.1| CheY-like receiver protein [Gemmata obscuriglobus UQM 2246] Length = 718 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 114/225 (50%), Gaps = 8/225 (3%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S K +FLA VSHE+RTPL IIG +++ P R + + S +L +V Sbjct: 223 SRAKGEFLANVSHELRTPLNGIIGMTDLTLGGELPPDQRDRLL----LVRESAGTLLTLV 278 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILAD 700 NDLLD++KIE+G+++L L V A+ L+ A K +++R + A +P + D Sbjct: 279 NDLLDLAKIEAGRLDLAPVRFELHRVVGRALRLLAERARNKGLVLRCAIAPEVPTEAVGD 338 Query: 701 LRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 + QI N++SNAI FT +G +I + V V DTG+G+ LEK Sbjct: 339 PDRLVQILTNLVSNAIKFTENGEVVIHVRAAERSAGGLAVAFEVADTGIGIPADRLEKIF 398 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +PF Q S + GTGLGL + + G+ + S P +G+ Sbjct: 399 RPFEQADGSTTRKYGGTGLGLSIVDRLTRMMGGRVTVASQPGRGS 443 >gi|153872459|ref|ZP_02001345.1| histidine kinase [Beggiatoa sp. PS] gi|152071075|gb|EDN68655.1| histidine kinase [Beggiatoa sp. PS] Length = 823 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 133/254 (52%), Gaps = 21/254 (8%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S +KS+FLA +SHE+RTPL +++ S+++ + + L + + +EY I SG+ +L ++ Sbjct: 131 SKYKSEFLANMSHELRTPLNSLLILSQLLADNKTNNLTD-KQVEYVRTIHSSGSDLLTLI 189 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700 N++LD+SK+E+GK+ + E VSL + V+ Q A EK + + A ++P +L D Sbjct: 190 NEILDLSKVEAGKIEIRSEDVSLTDLVATVKQKFQHLATEKGLAFQVQIAQDVPTVLHTD 249 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------------------VILRVR 742 + +KQI N+LSNA FT G + + S++E + + + Sbjct: 250 EQRLKQIINNLLSNAFKFTTQGEVRLDIESFASHQEGKDVLPLGEDLREGYQKFITISIT 309 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ + + + F Q S R GTGLGL +++ + G + S KG+ Sbjct: 310 DTGIGIPKDKQQIIFEAFQQADGSTSRRFGGTGLGLSISRQLARLLGGDLRLLSEEGKGS 369 Query: 803 LIEIIFPL-YDTSH 815 + P +D SH Sbjct: 370 TFVLSLPENFDVSH 383 >gi|296448571|ref|ZP_06890444.1| histidine kinase [Methylosinus trichosporium OB3b] gi|296253911|gb|EFH01065.1| histidine kinase [Methylosinus trichosporium OB3b] Length = 589 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 114/229 (49%), Gaps = 6/229 (2%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S KS FLA VSHEIRTPL ++G ++++ R + Y + I SG + ++ Sbjct: 73 SLAKSRFLATVSHEIRTPLNGVLGLAQLLAATRL----DAEQASYVDAIGASGRSLAQLI 128 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILAD 700 +D+LD SKIE+GK+ L E +L V + L+ A K + I A N P RI D Sbjct: 129 DDILDFSKIEAGKVELRIESFALAPLVEGVVELLAPRAEAKNLEIAGFIAANAPERIEGD 188 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 V+Q+ +N+ NA++FT GG + + + ++ RV DTG G+ E + F Sbjct: 189 AARVRQVLVNLAGNAVNFTSEGG-VGLRVEIDAEGALVFRVVDTGPGVPPGAREIIFEEF 247 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q S R GTGLGL +++ + G+ I P G++ P Sbjct: 248 EQGDGSSTRRHGGTGLGLAISRHLAKLMGGRLEIEDRPGPGSVFMFTLP 296 >gi|119485163|ref|ZP_01619548.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119457391|gb|EAW38516.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 876 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 93/313 (29%), Positives = 152/313 (48%), Gaps = 43/313 (13%) Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 L+S+ +I L + C + +DI+E KQ + L +AK+ AE + KS FLA +SHE+R Sbjct: 561 LISIELI--DLGGTECLLMMGNDITERKQ-ASLLRNAKEAAEAANRAKSLFLANMSHELR 617 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TPL AI+G+SE+++ +G ++ I +G+ +LD++ND+LD SKIE+G+MN Sbjct: 618 TPLNAILGYSELLREDA-QDMGLEEFVGDLKNIHVAGHHLLDLINDILDFSKIEAGRMNF 676 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717 H E ++ + E + + A + + A+NI I D+ V+Q LN+LSNA Sbjct: 677 HLETYTVATLLWEVETTIAPLAEKNTNTFKIEVADNIDIIHTDITKVRQSLLNLLSNACK 736 Query: 718 FTPSGGQIIISTTHTSNEE---------------------------------------VI 738 FT G + +T TS + VI Sbjct: 737 FTEQGLVTLKVSTETSPDPTTELPTVPPPDLPHSTHQRDSQITDFPYAPEANTKPITYVI 796 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +V DTG+GM+ ++ PF Q S + GTGLGL + + + + G+ + S Sbjct: 797 FQVIDTGIGMSPRQITTVFNPFTQADESTTRKYGGTGLGLTITRKLCELMGGELSVTSKL 856 Query: 799 AKGTLIEIIFPLY 811 +G+ + P + Sbjct: 857 GQGSTFIMRLPQF 869 >gi|328541656|ref|YP_004301765.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [polymorphum gilvum SL003B-26A1] gi|326411408|gb|ADZ68471.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Polymorphum gilvum SL003B-26A1] Length = 773 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/258 (28%), Positives = 126/258 (48%), Gaps = 8/258 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+++ + + L A++ AE + KS FLA VSHEIRTPL I+G + ++ + R Sbjct: 236 VLRDVTDRRLIEEDLLAARQNAESANEAKSRFLATVSHEIRTPLNGILGMAALLSDTRL- 294 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P Y ++ SG +L ++++LLD S+ E+G++ + P +L V L+ Sbjct: 295 ---TPEQAAYIKALESSGETLLMLIDELLDFSRAEAGRLVVQPAPAALAPLVENVAELLA 351 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A+ K + I ++P+ + D ++QI N+ N I FT GG + + + Sbjct: 352 PRAHAKGLEIAVRLHPHLPQTVTVDASRLRQILFNLAGNGIKFTDRGGVAVEVDGRPAPD 411 Query: 736 EVIL---RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 L VRDTG+G + E+ F Q+ + R GTGLGL +A+ +V G Sbjct: 412 GGTLLDIAVRDTGIGFRPEDAERLFGEFEQVDHGPARRYGGTGLGLAIAQRLVTLMGGTI 471 Query: 793 YIFSTPAKGTLIEIIFPL 810 S G + ++ P+ Sbjct: 472 AATSAEGAGAVFRVVLPV 489 >gi|317154358|ref|YP_004122406.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316944609|gb|ADU63660.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 599 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/257 (30%), Positives = 130/257 (50%), Gaps = 11/257 (4%) Query: 555 SLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 +L +H D++E + + L AK++AE + K+ FLA +SHEIRTPL I+G ++++ Sbjct: 193 ALGVHIDLTEQRAAEEALESAKEVAESANIAKTQFLANMSHEIRTPLNGILGMLRLLRDH 252 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 P EY + SG +L I+ND+L +S+IE+ +++ E ++L + Sbjct: 253 DL----PPEQAEYVTTAETSGRNLLAILNDVLSLSQIEANAVHVCQEGLNLPLLADAVLR 308 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-- 730 + + + + + + IP + AD ++QI N++ NA+ FT +G I T Sbjct: 309 VFKAQIDNSGVELGFTIDPTIPHDLCADQGKLRQILFNLVGNALKFTRNGSVRIDITAAD 368 Query: 731 ---HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 H + +I V DTG+G+ +L PF Q S + G GLGLP+ +V Sbjct: 369 DRRHPGDIILIFAVEDTGIGIAQDQLVSVFAPFTQADGSYARKYGGAGLGLPIVSRLVSL 428 Query: 788 NMGKFYIFSTPAKGTLI 804 G I S P +GTL+ Sbjct: 429 LGGSVCIDSQPGQGTLV 445 >gi|323343405|ref|ZP_08083632.1| two component system sensor histidine kinase/response regulator hybrid [Prevotella oralis ATCC 33269] gi|323095224|gb|EFZ37798.1| two component system sensor histidine kinase/response regulator hybrid [Prevotella oralis ATCC 33269] Length = 880 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/248 (29%), Positives = 129/248 (52%), Gaps = 22/248 (8%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAI-------IGFSEVIKNQRFGPLGNPRYIEYA 627 +++ E+ ++ K F +SHE+RTPLT I I + + QR Sbjct: 362 RRMEEEATNAKLQFFTNISHELRTPLTLIADPVEHIIDDENLTRQQR----------TML 411 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + R+ N++ +V ++LD KI++GKM L +L + + + I + A +K+I + Sbjct: 412 QIVRRNVNILTRLVGEILDFRKIQNGKMTLTLSDFNLSDCLKQWIDVFAATARKKKIALE 471 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 +++I R+ AD+ V++I N+LSNA+ FT GG+I + T ++V + V DTG+G Sbjct: 472 LECSDDI-RMRADIYKVERICYNLLSNAVKFTQEGGRITLKAA-TDGDKVSICVTDTGMG 529 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + EL + + F Q+ +S G GTG+GL + K+ + + G + S KGT + Sbjct: 530 IAKDELSRIFERFYQVKDSY---GGGTGIGLAIVKSFAELHHGTAVVDSEEGKGTTFTVT 586 Query: 808 FPLYDTSH 815 PL + H Sbjct: 587 LPLTNNDH 594 >gi|297537736|ref|YP_003673505.1| multi-sensor signal transduction histidine kinase [Methylotenera sp. 301] gi|297257083|gb|ADI28928.1| multi-sensor signal transduction histidine kinase [Methylotenera sp. 301] Length = 975 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 131/232 (56%), Gaps = 4/232 (1%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI++ K + L A++ AE KS F+A +SHE+RTPL +IIGF V+ G L Sbjct: 708 QDITQKKVLQASLIKARESAESADRIKSMFVASMSHELRTPLNSIIGFLGVVLQGMSGDL 767 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N + + S +L +++D++DISKIE+G + +H E +L +E ++++ Sbjct: 768 -NTKQKDQLGRAYHSAKHLLSLISDVIDISKIEAGFLEIHTESFALKPMFNEVVNVIHHI 826 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A+ K + ++ + +I + D + + Q LN++SNA+ +T +G + NEE+I Sbjct: 827 ADGKHLNLQIDCSEDII-LETDRKRLYQAILNVVSNAVKYTEAGS--VTVEAKIINEELI 883 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + +DTG+G++ LE+ KPF + + +I+ GTGLGL L + ++ +G Sbjct: 884 ITTQDTGIGISPSGLEQLFKPFERAESHLKIKTLGTGLGLYLTRKILTQLLG 935 >gi|269794138|ref|YP_003313593.1| signal transduction histidine kinase [Sanguibacter keddieii DSM 10542] gi|269096323|gb|ACZ20759.1| signal transduction histidine kinase [Sanguibacter keddieii DSM 10542] Length = 569 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 133/231 (57%), Gaps = 10/231 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVI-KNQRFG--PLGNPRYIEYANYIDRSGNLVLDIV 641 K F+ VSHE+RTPLT+I+G+ E+I ++ G PL EY R+ +L +V Sbjct: 339 KDRFVGTVSHELRTPLTSIMGYLELIAEDDSTGDNPLSEETR-EYVGIARRNAEQLLSLV 397 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 +DLL ++I+SG + L + +L V++A+ + E I + ++ +P ++ D+ Sbjct: 398 SDLLTTAQIDSGALRLTTDVTTLSSLVADAVEAARPRFVEAGITLTSTV---VPTVVQDV 454 Query: 702 --RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759 R + Q+ N+LSNA+ +TP+GG + ++T+ V + V DTG+GM+ +L K Sbjct: 455 DRRRMAQVIENLLSNALKYTPAGGTVTVTTSTVLGSSV-MTVSDTGIGMSRADLGKMFTK 513 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F + +++ R +G GLGL + +A+V+A+ GK I ST +GT + + P+ Sbjct: 514 FFRAESARTARIQGFGLGLVICRAIVEAHGGKLRIDSTLGRGTKVSAVLPV 564 >gi|242280477|ref|YP_002992606.1| histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123371|gb|ACS81067.1| histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 791 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 128/260 (49%), Gaps = 19/260 (7%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L +K +EK S KS FLA +SHEIRTP+ AI+G +++ G +P + Y Sbjct: 267 ELEKSKDKSEKASQFKSQFLAMISHEIRTPMNAILGMGDLL----LGTELDPEQMGYVEI 322 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 SG L+L I+ND+LD +IESG++ L P + V V A+ + I + Sbjct: 323 FRGSGELLLKIINDILDFVQIESGQIELVPVPFDPSQDVQSVCKSVAHSAHARDIEVICD 382 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 A +P +++ D V+Q+ +NI+SNA+ +T SG + + S E+ ++ VRDTG Sbjct: 383 VAQGVPAQVVGDPVRVRQVLMNIVSNAVKYTSSGEVEVCLSAEESGEDFERLLFTVRDTG 442 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-----------DANMGKFYI 794 +G+ + E + F Q G GLGL A + ++ G + Sbjct: 443 IGIPEGQRESLFEGFVQADGLASREYGGVGLGLAAASRLAVLMDGEIRFESESGKGSIFY 502 Query: 795 FSTPAKGTLIEIIFPLYDTS 814 FS P K +L E + + D S Sbjct: 503 FSIPFKKSLYEPLRSVADFS 522 >gi|212694778|ref|ZP_03302906.1| hypothetical protein BACDOR_04312 [Bacteroides dorei DSM 17855] gi|212662632|gb|EEB23206.1| hypothetical protein BACDOR_04312 [Bacteroides dorei DSM 17855] Length = 669 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/239 (33%), Positives = 132/239 (55%), Gaps = 12/239 (5%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK+ AE+ + K+ FLA +SHEIRTPL AI+GFS V+ + P +Y + I ++ Sbjct: 435 AKEKAEESNRLKTAFLANMSHEIRTPLNAIVGFSSVLVSDDSSPAEKA---QYCDIIQKN 491 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR--ILIRTSFA 691 +L+L ++ND+LDIS++ESGK+ +E + E A+S + Y + L T A Sbjct: 492 SDLLLHLINDILDISRMESGKIKFVWEECDVVELCQTALSTAE-YGRKTSALFLFETPVA 550 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 + + I D + +KQ+ +N+LSNA FTPSG + ++++ L V DTG G+ + Sbjct: 551 SLV--IKTDAQRLKQVLINLLSNAAKFTPSGSIKLAIAIDKQHQQLELSVSDTGCGIPSD 608 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + ++ + F ++ Q GTGLGL +++ +V+ GK ++ +G PL Sbjct: 609 KSDRVFERFEKLNEYSQ----GTGLGLAISRLIVENLGGKIWVDKDYTEGARFVFTHPL 663 >gi|150007164|ref|YP_001301907.1| two-component hybrid sensor kinase/response regulator [Parabacteroides distasonis ATCC 8503] gi|149935588|gb|ABR42285.1| two-component sensor histidine kinase with response regulator receiver domain [Parabacteroides distasonis ATCC 8503] Length = 793 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 84/280 (30%), Positives = 146/280 (52%), Gaps = 18/280 (6%) Query: 546 KKLPFS------SCYSLTMHDISEWKQEKNK---LSHAKKIAEKESSHKSDFLARVSHEI 596 KKL FS + LT DI E ++E+ + L A ++A+ + KSDFL+R+SH+I Sbjct: 235 KKLRFSFFDKERNILLLTRTDIMEVREEERQRQLLQDALQVAKSANQAKSDFLSRMSHDI 294 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTP+ AIIG + + R ++ I S L+L+++N++LD+SK+ESG + Sbjct: 295 RTPMNAIIGMTTI---ASMHIDDRERIVDCLKKIMVSSKLLLNLINEVLDMSKVESGHIL 351 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNA 715 L E + E + I++VQ ++K R F +++ D++ ++Q+ LN+LSNA Sbjct: 352 LTDEEFDMGELLQSVITMVQTSVSQKFQDFRVHLFQIKHEKLIGDVQRIQQVLLNLLSNA 411 Query: 716 IHFTPSGGQIIISTTH----TSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 I +TP G+I + N + + V D G+G+ L K +PF + ++ Sbjct: 412 IKYTPDYGKITLEIREKPIKNGNYGLFEVTVIDNGIGIKPDFLHKVFEPFERAEDATLRN 471 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +GTGLG+ +++ + G+ + S KG++ L Sbjct: 472 IQGTGLGMAISRNIAHMMNGEILVESEYGKGSVFTFTMQL 511 >gi|330821703|ref|YP_004350565.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3] gi|327373698|gb|AEA65053.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3] Length = 1172 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 136/260 (52%), Gaps = 4/260 (1%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E + LS E+ S +KS+FLA +SHE+RTPL + + + +++ R G L + Sbjct: 462 AELVSAQQSLSANAARLEQTSRYKSEFLANMSHELRTPLNSSLILARLLQENRGGNLTDE 521 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + + YA I S + +L+++ND+LD+SK+E+G + + E V LD + + A Sbjct: 522 Q-VHYAQTIHSSNSDLLNLINDILDLSKVEAGHIVMEPETVVLDTVMRSMREMFSPIAEG 580 Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K + + + A P I+ D + + QI N+LSNA+ FT G ++ + + E+ Sbjct: 581 KALTLTITRAPGTPGTIVTDHQRLVQILRNLLSNALKFTERG-EVALGISVDGAGEIRFE 639 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 VRD+G+G+ +LE + F Q S G+GLGL +++ + G+ + S P Sbjct: 640 VRDSGIGIAADKLEMIFEAFQQADGSTSRHYGGSGLGLSISRKFAELLGGRIDVVSEPGA 699 Query: 801 GTLIEIIFPLYDTSHPHDCI 820 G++ + PL D + P + Sbjct: 700 GSVFTLRLPL-DLAMPAAAL 718 >gi|83594772|ref|YP_428524.1| PAS/PAC sensor Signal transduction histidine kinase [Rhodospirillum rubrum ATCC 11170] gi|83577686|gb|ABC24237.1| PAS/PAC sensor signal transduction histidine kinase [Rhodospirillum rubrum ATCC 11170] Length = 801 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/257 (28%), Positives = 135/257 (52%), Gaps = 9/257 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L++ DI++ + + LS + KS+F+A VS+E+RTPLT I GFSE++ + Sbjct: 548 LSILDITDRVRVEQALSERTEALRAADMMKSEFIANVSYELRTPLTTISGFSEILSGAYY 607 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L N R EYA I + V+ +++++ D+ +++GK+ L + + A++ ++L Sbjct: 608 GEL-NTRQREYAEVITETSRQVVRLIDEITDLVSMQAGKLALELDAFDIHAALAAVLALG 666 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A + + + + ++AD +KQI +++SNAI T +GGQ+ ++ Sbjct: 667 RESARRRGVTLNFDCPPDAGWMVADETRIKQILFHLMSNAITGTDAGGQVTLAVQREDTP 726 Query: 736 E---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + ++ V DTG GM +A + F + P R +G GLGL L + V+ + G Sbjct: 727 DGGTMVFTVADTGRGMDEILQTRAFESFAKGP-----RADGAGLGLALVRRFVELHGGAV 781 Query: 793 YIFSTPAKGTLIEIIFP 809 + S P +GT + + P Sbjct: 782 DLVSVPGEGTTVTVRIP 798 >gi|254227454|ref|ZP_04920886.1| Signal transduction histidine kinase [Vibrio sp. Ex25] gi|262396281|ref|YP_003288134.1| signal transduction histidine kinase [Vibrio sp. Ex25] gi|151940066|gb|EDN58892.1| Signal transduction histidine kinase [Vibrio sp. Ex25] gi|262339875|gb|ACY53669.1| signal transduction histidine kinase [Vibrio sp. Ex25] Length = 631 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 133/250 (53%), Gaps = 8/250 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ + +L + AE + KS+FLA +SHEIRTP+ IIG + ++ + + +P+ Sbjct: 224 REHQTELEEERDRAEVANRKKSEFLATMSHEIRTPMNGIIGVASLLGDTKL----DPQQK 279 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E+ ID S + ++ I++D+LD SK+E+GK+ L L + + ISL + A +K + Sbjct: 280 EFVEIIDSSSHSLMTIIDDILDFSKVEAGKVELENVSYDLRRILDDVISLHTVKAKQKNL 339 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVR 742 + + ++P + D +KQ+ N+LSNAI FT G ++++ T ++ ++R R Sbjct: 340 QLLSDIDPHLPAEVQGDAARLKQVLNNLLSNAIKFTDRGHVKLLVELTRQEHDVAMIRFR 399 Query: 743 --DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 D+G+G+ + + F Q S + GTGLGL + +V+ G+ + S Sbjct: 400 VVDSGIGIAKENQQAIFERFQQADGSTTRKYGGTGLGLAIGAQLVNLMGGEIQLTSELGL 459 Query: 801 GTLIEIIFPL 810 G+ E P+ Sbjct: 460 GSCFEFSIPV 469 >gi|298377589|ref|ZP_06987541.1| sensor histidine kinase/response regulator [Bacteroides sp. 3_1_19] gi|298265608|gb|EFI07269.1| sensor histidine kinase/response regulator [Bacteroides sp. 3_1_19] Length = 795 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 84/280 (30%), Positives = 146/280 (52%), Gaps = 18/280 (6%) Query: 546 KKLPFS------SCYSLTMHDISEWKQEKNK---LSHAKKIAEKESSHKSDFLARVSHEI 596 KKL FS + LT DI E ++E+ + L A ++A+ + KSDFL+R+SH+I Sbjct: 237 KKLRFSFFDKERNILLLTRTDIMEVREEERQRQLLQDALQVAKSANQAKSDFLSRMSHDI 296 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTP+ AIIG + + R ++ I S L+L+++N++LD+SK+ESG + Sbjct: 297 RTPMNAIIGMTTI---ASMHIDDRERIVDCLKKIMVSSKLLLNLINEVLDMSKVESGHIL 353 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNA 715 L E + E + I++VQ ++K R F +++ D++ ++Q+ LN+LSNA Sbjct: 354 LTDEEFDMGELLQSVITMVQTSVSQKFQDFRVHLFQIKHEKLIGDVQRIQQVLLNLLSNA 413 Query: 716 IHFTPSGGQIIISTTH----TSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 I +TP G+I + N + + V D G+G+ L K +PF + ++ Sbjct: 414 IKYTPDYGKITLEIREKPIKNGNYGLFEVTVIDNGIGIKPDFLHKVFEPFERAEDATLRN 473 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +GTGLG+ +++ + G+ + S KG++ L Sbjct: 474 IQGTGLGMAISRNIAHMMNGEILVESEYGKGSVFTFTMQL 513 >gi|254228144|ref|ZP_04921573.1| Signal transduction histidine kinase [Vibrio sp. Ex25] gi|262393930|ref|YP_003285784.1| putative sensor/response regulator hybrid [Vibrio sp. Ex25] gi|151939217|gb|EDN58046.1| Signal transduction histidine kinase [Vibrio sp. Ex25] gi|262337524|gb|ACY51319.1| probable sensor/response regulator hybrid [Vibrio sp. Ex25] Length = 566 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 120/237 (50%), Gaps = 7/237 (2%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 +K AE+ +F+A ++HE+RTPL ++G +E++ + G R+ Y N + +SG Sbjct: 195 RKRAEESEKATKEFVAMINHELRTPLNGVLGSAELLSRTQLGE--EQRH--YLNNLTQSG 250 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L+ I+NDLLD SK+ +G M + + + +E + + A EKRI I Sbjct: 251 DLLRVIINDLLDFSKMNAGMMEIIDKVFAWEELEKAIMGVFSAKAAEKRIHFSIDKKLGI 310 Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 P L DL + QI +N++ NAI FT GG ++ N V DTG+G+ Sbjct: 311 PEFLVGDLERITQILVNLVGNAIKFTHLGG--VVLRVEWINGIAHFEVEDTGIGIPIEAQ 368 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 PF Q+ S + EG+GLGL + K +VD G+ S KGT ++ PL Sbjct: 369 PSLFDPFVQVDRSAKRSFEGSGLGLAICKNLVDLMQGEISFESEERKGTTFKVSIPL 425 >gi|149925387|ref|ZP_01913651.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine [Limnobacter sp. MED105] gi|149825504|gb|EDM84712.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine [Limnobacter sp. MED105] Length = 998 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 123/237 (51%), Gaps = 12/237 (5%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K+ A+ ES KS FLA +SHEIRTP+ AI+G + + N + +Y I SG Sbjct: 321 KERAKNESRIKSSFLANMSHEIRTPMNAILGMTALTLKTDL----NEKQKDYLTKIQLSG 376 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-----LIRTS 689 + +L ++N +LD+SKIES L P LD+ + E + A +K I L Sbjct: 377 DNLLHLLNSILDLSKIESDMFKLEQRPFRLDDVLEEVFGTLGNSALDKNIRLLYTLQGKG 436 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGV 746 + + R++ D V QI N++ NAI FT G + + +++V L+ V DTG+ Sbjct: 437 LQSTLNRLVGDSLRVGQILKNLIGNAIKFTSEGHINLTVKVLKQLDDQVTLQFSVSDTGI 496 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 GM+ +L++ F Q +S G+GLGL +AK +V G + STP +G++ Sbjct: 497 GMSKDQLQRVFDKFTQADSSTTRMFGGSGLGLSIAKELVHLMEGDIHAHSTPGRGSV 553 >gi|260220546|emb|CBA28192.1| hypothetical protein Csp_A06050 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 640 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 136/256 (53%), Gaps = 17/256 (6%) Query: 562 SEWKQEK--NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 S W E+ ++L A+ AE+ + KSDFLA +SHEIRTP+ ++G + ++ Sbjct: 227 SRWVAERQTDELRQARDAAEQANQAKSDFLANMSHEIRTPMNGVLGMTGLLLESNL---- 282 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N +YA I SG +L I+ND+LD+SKIE+G+M P SLD V +S++++ A Sbjct: 283 NKEQRDYATSICHSGEALLAIINDILDLSKIEAGRMEFESNPFSLDVLVDSVVSVLRIRA 342 Query: 680 NEKRILIRTSFANNIPR-----ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 +K + F+ +P + D ++Q+ N+L NA+ FT G++ + +N Sbjct: 343 EDKGVF----FSVGLPEGDGMDYVGDSLRIRQVLFNLLGNAVKFTMQ-GEVRLEIKVITN 397 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + VRD+G+G++ L + F Q+ +S + GTGLGL +++ +V+ G + Sbjct: 398 -GLRFEVRDSGIGISQEGLARIFSNFVQVDSSTSRKFGGTGLGLVISRKLVEGMNGSMGV 456 Query: 795 FSTPAKGTLIEIIFPL 810 S +G+ PL Sbjct: 457 ESELGQGSCFSFELPL 472 >gi|217962067|ref|YP_002340637.1| sensory box histidine kinase PhoR [Bacillus cereus AH187] gi|217064897|gb|ACJ79147.1| sensory box histidine kinase PhoR [Bacillus cereus AH187] Length = 587 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 96/376 (25%), Positives = 181/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ L + + + + P Sbjct: 240 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEEYLDRLY--YESFHHPE 297 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 ++ + +E+I + K K + L + I++ F Sbjct: 298 II-------------ELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 344 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 345 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 388 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + + + Sbjct: 389 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHM 447 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+GG + + Sbjct: 448 VLDNKAGEKEISLQVNALKRVS-VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELVEDK 506 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 507 YNAYI-KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 565 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 566 VDSEIGEGTTFTVVLP 581 >gi|158333826|ref|YP_001514998.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] gi|158304067|gb|ABW25684.1| two-component hybrid sensor and regulator histidine kinase, putative [Acaryochloris marina MBIC11017] Length = 653 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 87/285 (30%), Positives = 145/285 (50%), Gaps = 33/285 (11%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + KL AK++AE + KS FLA +SHE+RTPL AI+GFS+++ R L ++ Sbjct: 163 ERAQKLVAAKEMAESANLAKSTFLANMSHELRTPLNAILGFSQLLS--RDSTL-TAAHLH 219 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + I+ SG +L ++ND+L++SKIE+G++ L +L + +L Q K+I Sbjct: 220 KLSIINNSGEHLLALLNDILEMSKIEAGQITLDPTNFNLHHFLEGLYNLFQQKVFSKKIN 279 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-------GQIIISTTHTSNEE- 736 ++ ++ +P+ I AD++ ++Q+ +N+L NAI FT G +I + ++ N + Sbjct: 280 LKFQYSKTVPQYIQADIKKLRQVLINLLGNAIKFTNEGQVYLKVASRIYLDDAYSVNLQE 339 Query: 737 ----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG--EGTGLGLPLAKAMVD---- 786 + V DTG G++ + EK PF Q +Q GTGLGL +++ V+ Sbjct: 340 PTCLLTFSVEDTGPGVSEEDQEKIFHPFYQTEYGKQSHQGVHGTGLGLSISRQFVNLMGG 399 Query: 787 -------ANMGKFYIFSTPAKGTLIEIIFPLYDTS----HPHDCI 820 N G + FS P K + + P + HPH I Sbjct: 400 ELSISSQLNKGATFSFSIPVKVSTASALVPTLEQRILQVHPHQPI 444 >gi|153806588|ref|ZP_01959256.1| hypothetical protein BACCAC_00858 [Bacteroides caccae ATCC 43185] gi|149131265|gb|EDM22471.1| hypothetical protein BACCAC_00858 [Bacteroides caccae ATCC 43185] Length = 660 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 128/246 (52%), Gaps = 26/246 (10%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK+ AE+ + KS F++ +SHEIRTPL AI+GFS ++ N P + EYAN Sbjct: 419 ELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLLINS-VEP--SEELQEYANI 475 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL---I 686 I + NL+L +++D+LD+S++ESGK+ ++E L I+L N + + Sbjct: 476 IQTNSNLLLQLISDVLDVSRLESGKLQFNYEWCELVTHCQNMITL----TNRNKTTNADV 531 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL-RVRDTG 745 R + D ++QI +N+L+NA+ FTP+GG I + T ++ IL V DTG Sbjct: 532 RLQMPKEPYMLYTDPLRLQQIIINLLNNALKFTPAGGSITLDYTVDKEKQCILFSVTDTG 591 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-----------DANMGKFYI 794 G+ + E + F ++ Q GTGLGL + K + D G +I Sbjct: 592 TGIPEDKQELVFQRFEKLNEFVQ----GTGLGLAICKLTIQYMGGDIWIDKDYKGGARFI 647 Query: 795 FSTPAK 800 FS P K Sbjct: 648 FSHPIK 653 >gi|313159288|gb|EFR58653.1| prevent-host-death family protein [Alistipes sp. HGB5] Length = 651 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/258 (29%), Positives = 128/258 (49%), Gaps = 10/258 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E KQ + L AK AE KS FLA +SHEIRTPL AI+GFS ++ +G Sbjct: 267 DVTELKQTEKNLIEAKNKAEVSDRLKSAFLANMSHEIRTPLNAIVGFSNLLAET--DDIG 324 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R EY ++ + L+L +++D+LD+SKIE+G ++ V ++ E + + L Sbjct: 325 ERR--EYMRVVEENNELLLKLISDILDLSKIEAGTFEFNYGRVDVNRMCEETVCSLSLKV 382 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 +K + + + ++ D + Q+ N ++NA+ FT G I T E++ Sbjct: 383 KDKPVELIFGEHDAQCCVVGDKNRLIQVITNFINNAVKFTDEGS--ITLGYRTEGGELLF 440 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG G++ + F ++ + Q GTGLGL ++K++V+ G+ + S Sbjct: 441 HVEDTGSGISEEHRQSIFDRFVKLNSFAQ----GTGLGLSISKSIVEQMGGRIGVESEVG 496 Query: 800 KGTLIEIIFPLYDTSHPH 817 +G+ P P Sbjct: 497 RGSRFWFTIPAVTCDAPE 514 >gi|295136279|ref|YP_003586955.1| two-component system sensor histidine kinase/response regulator hybrid [Zunongwangia profunda SM-A87] gi|294984294|gb|ADF54759.1| two-component system sensor histidine kinase/response regulator hybrid [Zunongwangia profunda SM-A87] Length = 815 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/280 (28%), Positives = 139/280 (49%), Gaps = 50/280 (17%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L + D+ +Q + +L AK AE + +A ++H++R+PL +IG+SE++ + Sbjct: 288 LIIRDVRRSQQYRIELEEAKNFAETLLKRREQLMAAITHDLRSPLNTVIGYSELMNKTQ- 346 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM---NLHFEPVSLDEAVSEAI 672 LGN + Y + I++S + +L +VNDLLD+SK+E+GKM NL F P Sbjct: 347 --LGNKQR-HYLSQINKSSDFILHLVNDLLDLSKLEAGKMLVENLPFNP----------- 392 Query: 673 SLVQLYANEKRILIRTSFANNIP-------RILADLRS------------VKQIALNILS 713 + LI + NNIP ++ D+ +KQI N+++ Sbjct: 393 ----------KKLISDTVQNNIPANLNKDLEVIIDISEEADGQYSSDPFRIKQIIANLVT 442 Query: 714 NAIHFTPSGGQIIISTTHTSNEEV---ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 NA FT G I+ + T +++ I++V+DTG+G++ + E + F Q + + + Sbjct: 443 NACKFTEKGNIIVSAEIETKTKDIQYLIIKVKDTGIGISKEKQEVIFEEFSQENSGIEKK 502 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL + K++ G+ + S KG+ I P+ Sbjct: 503 YGGTGLGLTITKSLTSLLKGEISLQSEQGKGSEFTITIPV 542 >gi|167748593|ref|ZP_02420720.1| hypothetical protein ANACAC_03366 [Anaerostipes caccae DSM 14662] gi|167651907|gb|EDR96036.1| hypothetical protein ANACAC_03366 [Anaerostipes caccae DSM 14662] Length = 728 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 86/274 (31%), Positives = 147/274 (53%), Gaps = 22/274 (8%) Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHA---KKIA----EKESSHKSDFLARVSHEIRTPLT 601 P + T D++E + + +LS A +KI E+ S+ K+DFL+R+SH+IRTP+ Sbjct: 302 PDYKLFYATYTDVTEEHELQEQLSKALEKQKIISSELEQASNAKTDFLSRMSHDIRTPMN 361 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 AI+G + + +N+ G R Y + ++ SG +L ++ND+LDISKIE + L+ EP Sbjct: 362 AILGLASLARNE-LDHSGKVR--SYLDKLEASGQFLLGLLNDVLDISKIERNVIELNPEP 418 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---ILADLRSVKQIALNILSNAIHF 718 +DE + SL+ +R I+ +F R IL D + QI LN+L+N++ + Sbjct: 419 YGIDEFQQQVESLI--IPQCRRKDIQFNFYKEEIRYSTILMDKLRMNQIILNLLNNSVKY 476 Query: 719 TPSGGQIIISTT----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE-- 772 TP GG+I + + + L ++D G+GM+ E +PF Q + G+ Sbjct: 477 TPGGGRIELHVRDLEENNGRIHIQLLIKDNGIGMSKEFQEHMYEPFSQ-ERRENAGGDIR 535 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 +GLGL + +++V+ GK + S +GT+ + Sbjct: 536 NSGLGLAIVRSLVELMDGKIQVNSEVGQGTVFTV 569 >gi|17231253|ref|NP_487801.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132895|dbj|BAB75460.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1550 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 84/263 (31%), Positives = 139/263 (52%), Gaps = 14/263 (5%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 +++ +L A+ AE S KS FLA +SHEIRTP+ A++G + ++ L N + Sbjct: 872 RQRQELEVARSQAELASHAKSAFLANMSHEIRTPMNAVLGMTGLM----LETLLNQEQRD 927 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + I SG+ +L ++N++LD+SK+E+G+M L +L V E + L+ A+ K + Sbjct: 928 FMETIRISGDALLTLINEILDLSKLEAGEMALENLNFNLSTCVEEVLDLLAPQAHSKGLE 987 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST---THTSNEEVI-LR 740 I ++P ++ D ++QI +N++ NAI FT S G++++ + T +I Sbjct: 988 IAALIYRHVPIQLQGDASRLRQILMNLIGNAIKFT-SFGEVVMRVELRSETPTTAIIHFA 1046 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D+G+G+T + K PF Q+ S + GTGLGL + K +V G+ + S K Sbjct: 1047 VTDSGLGITLEDQHKLFTPFTQVDASTTRKYGGTGLGLAICKQLVTLMGGEIGVESQLGK 1106 Query: 801 GT--LIEIIFP--LYDTSHPHDC 819 G+ EI F L S DC Sbjct: 1107 GSKFWFEIPFAKQLQPVSFVEDC 1129 >gi|300866811|ref|ZP_07111490.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300335193|emb|CBN56650.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 1043 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 106/374 (28%), Positives = 170/374 (45%), Gaps = 28/374 (7%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L S + A S GI + G I N ++ GY E LR+ + E P Sbjct: 526 KLKSFVAAASIGIVFADIYGSITDANAEFLRIVGYSREH-LRRGELRWTEITPP------ 578 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT----------MHDIS 562 E L LD + E G + + +R ++P + L + D++ Sbjct: 579 --EYLPLDEQSIKEGKKTGVSPPYEKEYIRSDGSRVPVLIGFILVGEQREESVAFILDLT 636 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E KQ + L + + + K +FLA +SHE+RTPL A++G+++++++++F R Sbjct: 637 ERKQLEAALHQRAEELLQANRLKDEFLATLSHELRTPLNAMLGWTQLLRSRKFDEEKTAR 696 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +E IDR+ + ++ DLLD+S+I +GK+ L+ V L V AI V A K Sbjct: 697 ALET---IDRNTKSLAALIEDLLDVSRIITGKLRLNLRLVDLVSVVEAAIETVIPAAQAK 753 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EV 737 I I I RI D ++Q+ N+LSNAI FTP+GG + I+ +E Sbjct: 754 SIQIIPLLDERIERISGDSSRLQQVIWNLLSNAIKFTPNGGCVTIAIHRVGSELEGNFCA 813 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V DTG G+ L F Q ++ G GLGL + + +V+ + G S Sbjct: 814 EIEVTDTGQGINPEFLPHVFDRFSQADSTTTRSYSGLGLGLAIVRHLVELHGGTVKADSQ 873 Query: 798 -PAKGTLIEIIFPL 810 KG+ + PL Sbjct: 874 GSGKGSAFTVRLPL 887 >gi|237746473|ref|ZP_04576953.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes HOxBLS] gi|229377824|gb|EEO27915.1| two-component hybrid sensor kinase/response regulator [Oxalobacter formigenes HOxBLS] Length = 853 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/267 (29%), Positives = 140/267 (52%), Gaps = 17/267 (6%) Query: 556 LTMHDISEW----KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 +T+ DI + +Q + L+ A + A+ + KS FL+R+SH++RTP+ AIIG + + K Sbjct: 296 MTLRDIHDMLKKEEQHRQALTEAFEAAKSANEAKSHFLSRMSHDMRTPMNAIIGLTTIAK 355 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 N P + + ID S +L+++N++LD +IESGK L +P +L + + Sbjct: 356 NH---PGDTGKIRDCLEKIDTSSQHLLNLINEVLDTCRIESGKFFLEEKPFTLSGLIGDT 412 Query: 672 ISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 +++ + ++ +R + I D + +++I LNILSNAI +TP GG +I+ T Sbjct: 413 LAMTRPAIQRQKHTLRVNVRQLEHETIKGDPQRIQEIFLNILSNAIKYTPDGG--VITWT 470 Query: 731 HTSNEEVILRV-------RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + +E I V D G+GM++ +K +PF + +S+ +GTGLG+ +A Sbjct: 471 ISESEAAIRGVGCYRFVFEDNGIGMSDEFRKKIFEPFEREKDSRTNHIQGTGLGMTIALT 530 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL 810 + G + S KG+ + L Sbjct: 531 IARLMNGSIDVESEAGKGSRFTVTLYL 557 >gi|184157755|ref|YP_001846094.1| Signal transduction histidine kinase [Acinetobacter baumannii ACICU] gi|332876441|ref|ZP_08444208.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Acinetobacter baumannii 6014059] gi|183209349|gb|ACC56747.1| Signal transduction histidine kinase [Acinetobacter baumannii ACICU] gi|323517647|gb|ADX92028.1| Signal transduction histidine kinase [Acinetobacter baumannii TCDC-AB0715] gi|332735299|gb|EGJ66359.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Acinetobacter baumannii 6014059] Length = 1154 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/266 (28%), Positives = 136/266 (51%), Gaps = 10/266 (3%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ- 613 +L + +I+ + L A+ AE+ + KS ++ +SHE+RTPL +I+G+S++++ Q Sbjct: 654 ALLIDEIAAHEVTSKDLQDARIAAERANDAKSRYVIGISHELRTPLNSILGYSQLLQKQE 713 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + G I RSG + +++ LLD+++IE+GK++L+ V + + I Sbjct: 714 QLSEQGKMAL----GVISRSGQHLTSLIDGLLDLARIETGKISLNVVDVHFPNFIEQIIQ 769 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + Q +K + N+P + D + ++Q+ +N+L NA+ FT SG I Sbjct: 770 MFQPQFEQKNLQFVYEIGENLPHYVRTDKKRLEQVLINLLGNALKFTTSG--TITLKVEY 827 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + +RDTG G+ +LE+ PF + N Q G GLGLP+ K +VD G+ Sbjct: 828 RFQTAYFEIRDTGCGIAEADLERIFNPFERGSNVVQGGFTGIGLGLPIVKLLVDLLGGQL 887 Query: 793 YIFSTPAKGTLIEIIF--PLYDTSHP 816 + S +G+ +I F P + HP Sbjct: 888 SVTSQLNQGSQFKIKFYLPSKEVVHP 913 >gi|150398896|ref|YP_001322663.1| integral membrane sensor signal transduction histidine kinase [Methanococcus vannielii SB] gi|150011599|gb|ABR54051.1| integral membrane sensor signal transduction histidine kinase [Methanococcus vannielii SB] Length = 620 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 136/252 (53%), Gaps = 7/252 (2%) Query: 561 ISEWKQEKNKLSHAKKIAE--KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 IS + EK L +K E K KSD +A VSHEIRTPLT+I G+ E++ ++ G + Sbjct: 368 ISNKELEKRALELEEKNTELKKLDDLKSDLIAIVSHEIRTPLTSIKGYVELVLDEAVGKI 427 Query: 619 GNPRYIEYANYIDRSGNLVLD-IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 N + R + L+ +++ +LD+SK+ G++ +H E +++ + + E I ++ Sbjct: 428 NNSQ--RKCLTTARENVVRLNRLISSMLDLSKLAKGELEMHREEINIKKTIDEVIDDLKP 485 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 + EK I I + I I AD +KQ+ +N++ NAI F+P I I + +V Sbjct: 486 ISAEKNINITLEIDDII--INADKDRMKQVFINLIENAIKFSPENEIIEIKGKEEYHGDV 543 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V+D G G+ +LEK F Q S + +G+GTGLGL + K+++ A+ G ++ S Sbjct: 544 SITVKDNGEGIPKDKLEKVFDRFYQADLSPKRKGKGTGLGLAVCKSIIQAHGGSIWVKSE 603 Query: 798 PAKGTLIEIIFP 809 KG I+ P Sbjct: 604 IGKGCTFYIVLP 615 >gi|256827840|ref|YP_003156568.1| GAF sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577016|gb|ACU88152.1| GAF sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1356 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 83/269 (30%), Positives = 144/269 (53%), Gaps = 18/269 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 QE+ KL A+++ E S +KS+FLA +SHE+RTPL +I+ S+++ + + G L +P+ E Sbjct: 663 QEQLKL-KAQEL-ESASRYKSEFLANMSHELRTPLNSILILSQLLSHNKEGNL-SPKQTE 719 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A+ I+ SG +L ++N++LD+SK+E+GK+ LH E + L +S+ + + A EK + Sbjct: 720 AASAINSSGADLLRLINEILDLSKVEAGKVELHLEEMPLTSMISDLQRVFKGVAVEKGVA 779 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH------------T 732 +P +L D ++Q+ N+LSNA FT G + +S + + Sbjct: 780 FLVEQDPALPETMLTDTHRLQQVLRNLLSNAFKFTDH-GSVTLSISRPGPEVDLPEGIPS 838 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + E + + V D G+G+ + + F Q S + GTGLGL +++ + G+ Sbjct: 839 AEEAICIAVTDMGIGIPEDKQGTIFEAFRQADGSTSRKYGGTGLGLSISRELTKLLGGEI 898 Query: 793 YIFSTPAKGTLIEIIFPL-YDTSHPHDCI 820 + S KG+ +I PL + P D I Sbjct: 899 RLRSQEGKGSTFSLILPLRHHADAPTDEI 927 >gi|224535490|ref|ZP_03676029.1| hypothetical protein BACCELL_00353 [Bacteroides cellulosilyticus DSM 14838] gi|224522883|gb|EEF91988.1| hypothetical protein BACCELL_00353 [Bacteroides cellulosilyticus DSM 14838] Length = 754 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/247 (30%), Positives = 132/247 (53%), Gaps = 10/247 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK-NQRFGPLGNPRY 623 K + +L A+ +AEK + K FLA +SHEIRTPL AI+GFS ++ + P Sbjct: 510 KDREQELEEARLLAEK-AELKQSFLANMSHEIRTPLNAIVGFSNILALDDGVSP---EER 565 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 +EY I+++ +L+L ++ND+L++S+IESG M+ +E + E V Q+ +E+ Sbjct: 566 LEYIGSINKNSDLLLKLINDILELSRIESGYMSFEYEKCFVSELVDSIYMTHQMLISEQL 625 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 I+ A + ++ D + Q+ N L+NA FT +G + + ++ V + V D Sbjct: 626 EFIKELDAVQV-EVMVDKGRLTQVITNFLNNASKFTKTGYIKLGYRYLSESDRVAIYVED 684 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG G+ EL + F + + +G GLGL + + +V+ GK ++S P KG+ Sbjct: 685 TGRGI---ELSEQKMIFSRFYKQDEF-SQGAGLGLSICQVIVEKLRGKIELWSEPGKGSR 740 Query: 804 IEIIFPL 810 ++ P+ Sbjct: 741 FTVVLPV 747 >gi|206977124|ref|ZP_03238023.1| sensory box histidine kinase PhoR [Bacillus cereus H3081.97] gi|206744609|gb|EDZ56017.1| sensory box histidine kinase PhoR [Bacillus cereus H3081.97] Length = 587 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 96/376 (25%), Positives = 181/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ L + + + + P Sbjct: 240 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEEYLDRLY--YESFHHPE 297 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 ++ + +E+I + K K + L + I++ F Sbjct: 298 II-------------ELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 344 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 345 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 388 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + + + Sbjct: 389 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHM 447 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+GG + + Sbjct: 448 VLDNKAGEKEISLQVNALKRVS-VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELVEDK 506 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 507 YNAYI-KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 565 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 566 VDSEIGEGTTFTVVLP 581 >gi|117618265|ref|YP_855448.1| aerobic respiration control sensor protein ArcB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559672|gb|ABK36620.1| sensor histidine kinase/response regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 770 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/269 (27%), Positives = 141/269 (52%), Gaps = 24/269 (8%) Query: 545 IKKLPFSSCYSLTM------HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 ++K+PF + + DI+E KQ ++KL EK S K+ F++ +SHE+RT Sbjct: 244 LRKVPFFDRFGKRLGLLGFGRDITERKQYQDKL-------EKASRDKTTFISTISHELRT 296 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PL I+G S ++ + PL +P+ + I S + +I ND++D+ K++ ++ + Sbjct: 297 PLNGIVGLSRMLMDT---PL-DPKQHQQLKTIHLSAVTLGNIFNDIIDLDKLDRRRLEIA 352 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIH 717 P+ L + E +L ++ A +K + + ++P+ ++AD ++Q+ N++ NA+ Sbjct: 353 PTPIDLPAFLDELETLSRIQAEQKGLYLHFDRDGDVPQFVMADGTRLRQVLWNLVGNAVK 412 Query: 718 FTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 FT GG + TH ++ + V DTGVG+ + EK + Q+ + G Sbjct: 413 FTDEGGVTVRCLTHPADTPGKLALHFEVEDTGVGIPRAQQEKIFAMYYQVQGKKH--ATG 470 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TG+GL +++ +V A G+ Y+ S P +G Sbjct: 471 TGIGLAVSRQLVQAMGGQLYVDSDPGEGA 499 >gi|226945000|ref|YP_002800073.1| hybrid histidine protein kinase [Azotobacter vinelandii DJ] gi|226719927|gb|ACO79098.1| hybrid histidine protein kinase [Azotobacter vinelandii DJ] Length = 826 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/240 (32%), Positives = 126/240 (52%), Gaps = 8/240 (3%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 E K A+ ++E+ + K+ FLA +SHEIRTPL A++G +++ P P+ + Sbjct: 272 EVAKSEQARLLSEQIAREKTAFLALMSHEIRTPLNAMLGMTQLALKSELSP---PQRMRI 328 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + R+G +L I+ND+LD+SKI+SGK+ L L+ +++ + ++ A +K + + Sbjct: 329 ETIL-RAGRHLLSIINDILDLSKIDSGKLVLEKTDFELEHLLADVVGMLADKAADKGLPL 387 Query: 687 RTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVR 742 A+ PR+L D + QI LN L NAI FT G +I + T + VR Sbjct: 388 HVRVADGAPRMLVGDPMRISQILLNYLDNAIKFTQRGEIALEIEVRPDGTEYWLLTGSVR 447 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+GM ++ + F Q S R GTGLGL + + + ++ G STP G+ Sbjct: 448 DTGIGMDAQQVANLFQAFRQADASITRRFGGTGLGLAICRRLAESMDGSTGASSTPGAGS 507 >gi|326793449|ref|YP_004311269.1| integral membrane sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] gi|326544213|gb|ADZ89433.1| integral membrane sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] Length = 1148 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 131/239 (54%), Gaps = 7/239 (2%) Query: 566 QEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 QE ++ L AK++AE+ + KS +L +SHE+RTPL +IIG+++++ +++ P + + Sbjct: 665 QETDRALQDAKELAERANEAKSRYLTGISHELRTPLQSIIGYAQLLSDKKDAPTQHQNGL 724 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I RSG + D++ LLDISKIE+G+ +L+ V L + + S+ ++ A K I Sbjct: 725 ---DIIQRSGLYLADLIEGLLDISKIEAGRFDLYRNTVDLPNLIEQLESMFEMQARGKGI 781 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + +PR ++ D + ++QI +N+LSNA+ +T G + + N+ + D Sbjct: 782 EFELNIRAPLPRLVITDEKRLRQILINLLSNAVKYTQKGK--VTFDINYRNQVAEFHIVD 839 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TGVG+ L++ PF ++ + GTGLGL + K + + G S G+ Sbjct: 840 TGVGIKEEYLQRIFDPFERVRDRYSANLPGTGLGLTIVKLLTEIMGGDLKARSEVGSGS 898 >gi|303327814|ref|ZP_07358254.1| sensory box histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] gi|302862175|gb|EFL85109.1| sensory box histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] Length = 1165 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 125/244 (51%), Gaps = 8/244 (3%) Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 W Q+ +L A+ AE + KSDFLAR+SHEIRTP+ AI+G + ++ R + R Sbjct: 628 WLQDITELRAARLAAEASTRAKSDFLARMSHEIRTPMNAILGMTHLLLQTRV----DERQ 683 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 Y ++ +L ++ND+LD SKIE+G+M + P L E + L+ A EK Sbjct: 684 RHYLESTRQAARNLLGLLNDILDFSKIEAGRMTMENAPFLLSEVLENLADLLVFSAAEKG 743 Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVIL 739 + + ++P ++ D Q+ N+ +NA+ FT G + + + + + Sbjct: 744 LELLFYVGPDVPYALVGDRLRFSQVLTNLANNALKFTHQGSVTLSVHLESKDAHQARLRV 803 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 VRDTG+G+T + + F Q+ S R GTGLGL + + +V G+ + S P Sbjct: 804 EVRDTGIGLTREQAGTLFQAFQQVDTSTTRRYGGTGLGLAICERLVGMMDGRIRVESEPG 863 Query: 800 KGTL 803 KG++ Sbjct: 864 KGSV 867 >gi|254411501|ref|ZP_05025278.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196182002|gb|EDX76989.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 947 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/271 (27%), Positives = 143/271 (52%), Gaps = 34/271 (12%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q +L AK+ A+ ++ KS+FLA +SHE+RTPL ++G+++++ QR + + R + Sbjct: 434 EQRTAELKTAKEDADTANNAKSEFLANMSHELRTPLNGVLGYAQIL--QRSKTMSD-REL 490 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I + G+ +L ++ND+LD++KIE+ KM LH + + + + ++ A+ K I Sbjct: 491 DGVRIIHQCGSHLLMLINDILDLAKIEARKMELHGSDIHFPSFLRGVVEICRIRADAKGI 550 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------- 735 +++P I D + ++Q+ +N+LSNAI FT +GG + + N+ Sbjct: 551 SFIYQPTSSLPAGIHVDEKRLRQVLINLLSNAIKFTDTGG-VTFKVGYADNQDNHSIGGH 609 Query: 736 --------------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 ++ ++ DTGVGM+ +L++ PF Q+ + ++ + EGTG Sbjct: 610 NGDKPEGVSHPQETSTPPHHQIRFQIEDTGVGMSPQQLQRIFLPFEQVSDRKR-QAEGTG 668 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 LGL ++ +V + S KG++ + Sbjct: 669 LGLAISTKIVQLMGSTIQVHSEVGKGSVFTV 699 >gi|42783765|ref|NP_981012.1| sensory box histidine kinase PhoR [Bacillus cereus ATCC 10987] gi|42739695|gb|AAS43620.1| sensory box histidine kinase PhoR [Bacillus cereus ATCC 10987] Length = 587 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 96/376 (25%), Positives = 180/376 (47%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ L + + + + P Sbjct: 240 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEEYLDRLY--YESFHHPE 297 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 ++ + +E+I + K K + L + I++ F Sbjct: 298 II-------------ELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 344 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 345 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 388 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L V + + + Sbjct: 389 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGTVDMKGLLEDIHM 447 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+GG + + Sbjct: 448 VLDNKAGEKEISLQVTTLKRVS-VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELAEDK 506 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 507 YNAYI-KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 565 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 566 VDSEVGEGTTFTVVLP 581 >gi|283852658|ref|ZP_06369924.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283571949|gb|EFC19943.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 1101 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/252 (30%), Positives = 124/252 (49%), Gaps = 9/252 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ + L AK+ A++ + KS FLA +SHEIRTP+ AI+G +EV Sbjct: 573 ERRRNLDALRAAKEDADRANQAKSQFLAGMSHEIRTPMNAILGLTEVALRTEL----TEE 628 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +Y + + S +L+I+ND+LD SKIE+ +M L L E + AI + L A EK Sbjct: 629 QRDYLDTVSDSARHLLNILNDILDFSKIEARQMELEAVDFDLHELLRSAIKTLGLGAREK 688 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEV 737 + + +PR + D V+Q+ +N++ NA+ FT +G + + + Sbjct: 689 GLRLALDIFPGLPRHVCGDPGKVRQVLVNLIGNAVKFTAAGSVTVRAGLAAGAVGEPGRL 748 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V DTG+G+ LE F Q NS + GTGLGL +++ + G+ ST Sbjct: 749 VFEVADTGIGIRPDMLEVIFDSFRQADNSTARQYGGTGLGLAISRELAGLMGGEIRAAST 808 Query: 798 PAKGTLIEIIFP 809 P G+ P Sbjct: 809 PGCGSRFTFTVP 820 >gi|220933316|ref|YP_002512215.1| Histidine kinase [Thioalkalivibrio sp. HL-EbGR7] gi|219994626|gb|ACL71228.1| Histidine kinase [Thioalkalivibrio sp. HL-EbGR7] Length = 615 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/249 (34%), Positives = 132/249 (53%), Gaps = 18/249 (7%) Query: 559 HDISEWKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 H +S + +N +LS A + KS FLA +SHEIRTPLTAI GF+E++ P Sbjct: 214 HYVSGYVTRQNIRLSDAMAV-------KSRFLATMSHEIRTPLTAITGFAELL----LDP 262 Query: 618 LGNPRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD--EAVSEAISL 674 R E A I R+GN + +VN++LD SK+E+ K LH EP+ + E + E S+ Sbjct: 263 RTRVRQREEAIRTILRNGNHLQQVVNEILDFSKLEANK--LHVEPMEIRPLELIEEVASV 320 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +++ A EK + + +P ++ D +KQI N+ +NA+ FT G I+ + + Sbjct: 321 LRMQAREKGLTLELEHRFPLPAVIHTDPVRLKQILFNLGNNAVKFTEQGMIRIVVSADPT 380 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + + + V DTG+G+ +L + PF Q S R GTGLGL L++ + G Sbjct: 381 QQRMRIDVMDTGIGLNPEQLARLFNPFTQADASITRRFGGTGLGLYLSRELARMLGGDIQ 440 Query: 794 IFSTPAKGT 802 + S P G+ Sbjct: 441 VDSVPRHGS 449 >gi|83814673|ref|YP_446726.1| sensory box sensor histidine kinase/response regulator [Salinibacter ruber DSM 13855] gi|83756067|gb|ABC44180.1| sensory box sensor histidine kinase/response regulator [Salinibacter ruber DSM 13855] Length = 1443 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 125/240 (52%), Gaps = 5/240 (2%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL---GNPRYIEYANYIDRSG 634 A K + KS FLA +SHEIRTPLT+IIGF+EV+ + G L + A+ I++ G Sbjct: 1201 ARKAARLKSAFLANMSHEIRTPLTSIIGFAEVLGAE-VGALDASAAGSLEQKAHLIEQGG 1259 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +LD + +L++SK+E+G+M L PV L + ++ A +K + ++ Sbjct: 1260 KRLLDTLEGVLNLSKLEAGQMELDRRPVDLADRARRTAEELKPKATDKGVRLQVETGTGP 1319 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 R AD V+ + N+LSNAI +T GG++ + T+ + +L V DTG+GM + Sbjct: 1320 VRARADEGGVQIVVQNLLSNAIKYTNEGGRVRVR-TYREDGAAVLEVEDTGIGMEPEAAK 1378 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + +PF Q + EG+G+GL + + + G + + G+ + P +++ Sbjct: 1379 ELFEPFRQASEGIGRKYEGSGVGLAVTQKATEEMDGDIEVDTEKGDGSRFVVRLPRAESA 1438 >gi|75907937|ref|YP_322233.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75701662|gb|ABA21338.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 628 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 84/264 (31%), Positives = 131/264 (49%), Gaps = 12/264 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I E Q + A+ E+ S K +FLA VSHE+R+PL I+G+S +++ ++ + Sbjct: 229 IEERAQALERERAARIELERASRMKDEFLAIVSHELRSPLNGILGWSRLLRTRKL----S 284 Query: 621 PRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P IE A I+R+ ++ DLLDIS+I G + L P L + A+ V+ A Sbjct: 285 PEKIEQALESIERNAQAQTQLIEDLLDISRIIRGNIRLLVRPTKLIPVIQAALDTVRPIA 344 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 N K I I + +I + AD ++Q+ N+LSNA+ FTP GG++ I V + Sbjct: 345 NTKSIQIISRLNFDIGLVSADPERLQQVIWNLLSNAVKFTPEGGRVEICLEQVET-NVQI 403 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 RV DTG G++ L F Q + G GLGL + + +V+ + G + S P Sbjct: 404 RVTDTGKGISPEFLPYVFDRFRQADATTTRNQGGLGLGLAIVRNLVELHNGTVSVAS-PG 462 Query: 800 KG-----TLIEIIFPLYDTSHPHD 818 +G T+ + P Y T P + Sbjct: 463 EGQGATFTVQLPLLPSYSTVTPEE 486 >gi|303242336|ref|ZP_07328821.1| multi-sensor hybrid histidine kinase [Acetivibrio cellulolyticus CD2] gi|302590099|gb|EFL59862.1| multi-sensor hybrid histidine kinase [Acetivibrio cellulolyticus CD2] Length = 917 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/248 (31%), Positives = 137/248 (55%), Gaps = 7/248 (2%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 HD++ ++ + ++ AKKIAE+ + KS FLA +SHEIRTPL IIG S+++ + P Sbjct: 409 HDVTSFRVAQEQMLQAKKIAEEANKTKSIFLANMSHEIRTPLNGIIGMSDLMLRVKMTP- 467 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 E I +L ++N++LD SKIE+ K+ + L E + E+I++ ++ Sbjct: 468 --EEQRETTKTIISCSQNLLHLLNNILDFSKIEAEKVEISSNVFDLKEIIGESINMYKIR 525 Query: 679 ANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE- 735 A EK + I F + + + + D ++QI N+++NAI FT G ++++ + Sbjct: 526 AKEKSLDISAGFQDGLENLWIGDKVKIQQILNNLINNAIKFTIEGRINVLVNKLNDDGSC 585 Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E+ V DTG+G+ + +L K F Q+ S + GTGLGL ++K +V+ G+ ++ Sbjct: 586 CELQFTVSDTGIGIEDKDLNKLFVAFSQVDGSYTRQFGGTGLGLSISKKLVELMGGRIWV 645 Query: 795 FSTPAKGT 802 ST G+ Sbjct: 646 ESTMGVGS 653 >gi|291571943|dbj|BAI94215.1| multi-sensor hybrid histidine kinase, fragment [Arthrospira platensis NIES-39] Length = 730 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 128/239 (53%), Gaps = 8/239 (3%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 N L + A KS FLA++SHEIRTP++ ++G E++ P+ +Y Sbjct: 48 NNLVETRNAALDAVQFKSRFLAQMSHEIRTPMSGVLGMVELLMQTHL----TPQQKDYTQ 103 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I RS +L ++N++LD+SK+E+G+ +L L + + + L+ + A +K++ + Sbjct: 104 TIYRSAKHLLTVINEILDLSKLEAGETHLESHDFDLQDCLETVVDLLSVKAEDKQLELII 163 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDT 744 NIPR L D ++Q+ +N+++NAI FT SG II T N++ I + DT Sbjct: 164 LLEPNIPRYLKGDGMRLQQVLINLVNNAIKFTQSGHIIIRLTPRFINQDQINIYFSIEDT 223 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 G+G+++ + +PF ++ + GTGLGL + + +V+ G+ + S G++ Sbjct: 224 GLGISDELQPQLFQPFSPASSATNRQYGGTGLGLSICQHLVNLMGGEIGVNSQEGDGSI 282 >gi|256838767|ref|ZP_05544277.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|256739686|gb|EEU53010.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] Length = 657 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 128/250 (51%), Gaps = 12/250 (4%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 ++W++ +L K+ AE KS FLA +SHEIRTPL AI+GFSE++ +P Sbjct: 417 TKWEKMIQQLKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVT-----CDDP 471 Query: 622 R-YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 EY N I + L+L ++ND+LD+SKIESG + E +L + +E +Q Sbjct: 472 EEKKEYINIIQSNNELLLRLINDILDLSKIESGIIERRKENFNLAKVCNELFVTIQAKMT 531 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + +R N+ +L D +KQ+ +N L+NA+ T SG I E + + Sbjct: 532 NPNVELRLDGPNSECWVLLDRNRLKQVWMNFLTNAVKCTKSG--YIKMGYGIEREGLRIY 589 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+G+ + +K F ++ Q GTGLGL +++A+V+A G+ S Sbjct: 590 VEDTGIGIPDDLHDKVFTRFEKLNEFSQ----GTGLGLTISRAIVEAAGGEVGFTSKLGV 645 Query: 801 GTLIEIIFPL 810 G+ PL Sbjct: 646 GSTFWAWLPL 655 >gi|229096517|ref|ZP_04227488.1| hypothetical protein bcere0020_17640 [Bacillus cereus Rock3-29] gi|228686723|gb|EEL40630.1| hypothetical protein bcere0020_17640 [Bacillus cereus Rock3-29] Length = 392 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 83/234 (35%), Positives = 119/234 (50%), Gaps = 13/234 (5%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 EK K++F+A +SHEIRTPLT I G+SE +K L + I + ++ Sbjct: 170 EKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVEH--LTEEEIKQGMGIISGETDRLI 227 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI- 697 +V +LLD S+++S NL+ + V L + + E I + A +K+I F N I RI Sbjct: 228 HLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEKKQI----QFINTIERIE 283 Query: 698 -LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 L D +KQI LNI+ NAI ++ G + I T + VI +V+D G+G+ L Sbjct: 284 LLGDRNRLKQIFLNIIQNAIKYSHENGTVYIEATKNEGQAVI-KVKDEGIGIAKEHLPYI 342 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F QI N G GLGL + K MV+ + G I S GT I I PL Sbjct: 343 EQSFYQINN----HAAGAGLGLAIVKKMVELHRGTLSIVSKEGIGTTILIKLPL 392 >gi|187930210|ref|YP_001900697.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J] gi|187727100|gb|ACD28265.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J] Length = 652 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 96/358 (26%), Positives = 162/358 (45%), Gaps = 35/358 (9%) Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530 +GI+ + N A + GY EDIL K + Q + + ++ LE++ Sbjct: 161 QGIVRTWNAASRSILGYAREDILGKSAEILYPQAARE----------AGEFQRKLERV-- 208 Query: 531 GSTKEEKLLSLRIIIKK--LPFSSC---------------YSLTMHDISEWKQEKNKLSH 573 +E L R +++K PF + +S + D +E + + L Sbjct: 209 --RREGSLTDDRWMLRKDGTPFYASSVVTAIHNETGQLVGFSKIIRDSTEERIAADALRR 266 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK+ AE + K FLA +SHE+RTPLT I+ +++ ++ P + + R+ Sbjct: 267 AKEEAETANHAKDHFLAVLSHELRTPLTPILTAVHLLELRQDLP---AYVVAQLEVVRRN 323 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 L +++DLLDI+ I GK+ + F V L + + + + KR+ ++T F Sbjct: 324 AELEARLIDDLLDITGIARGKLAVSFALVDLYPLLESTLEMSRNDMQAKRLSLKTRFEAG 383 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 R+ AD ++Q+ N++ NA+ FTP GG I + + S V + V+D G+G+ L Sbjct: 384 RSRLYADGARIQQVIWNLVRNAVKFTPEGGAIGVRVWNPSPSTVAVAVKDNGIGIEPDAL 443 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA-KGTLIEIIFPL 810 + F Q S R G GLGL +A A+V + G S +G + PL Sbjct: 444 PRIFSAFEQADASITQRFGGLGLGLAIAYALVQKHEGSLIAESAGRHEGATFTLTLPL 501 >gi|329849356|ref|ZP_08264202.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Asticcacaulis biprosthecum C19] gi|328841267|gb|EGF90837.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Asticcacaulis biprosthecum C19] Length = 535 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/259 (30%), Positives = 137/259 (52%), Gaps = 6/259 (2%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + + +++ L A + A ++ KS+FLA +SHEIRTP+ AI+G S ++K+ + PL Sbjct: 139 LEDRERQTRALEIAVEKANAANTAKSEFLANMSHEIRTPMNAILGLSTILKHSQ--PLTE 196 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 ++ +Y + + S +L ++NDLLDI+KIE+ + + P LD+ + + ++ L A Sbjct: 197 QQH-KYIDTLGASSESLLMLINDLLDIAKIEASGIEIEHIPFQLDQVIRDIADMMGLKAR 255 Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG--GQIIISTTHTSNEEV 737 EK + +R + + D ++QI N+ SNAI FT SG I+ S + + Sbjct: 256 EKDLDLRLDLDHIQGKWFCGDPARLRQIVTNLCSNAIKFTDSGEVAIIVASAPQGRHCHI 315 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V DTGVG+ +L++ F Q N+ + GTGLGL ++K + + G + S Sbjct: 316 TISVTDTGVGIAPDKLDRIFAKFTQADNTISRKFGGTGLGLAISKTLAELMGGTIAVESE 375 Query: 798 PAKGTLIEIIFPLYDTSHP 816 +G+ + PL P Sbjct: 376 LDRGSRFTLALPLRLADRP 394 >gi|294665141|ref|ZP_06730443.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605102|gb|EFF48451.1| histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 767 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 126/241 (52%), Gaps = 8/241 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S K+ FLA + HE+RTP+T ++G SE++ + Y I R Sbjct: 390 HKQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTSL----DIEQRSYTESIRR 445 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--RILIRTSF 690 +G +L +VND LD+++IESG++ L EP S+ + V+E +L+ A E+ R + Sbjct: 446 AGAHLLRLVNDALDLARIESGRLELDVEPFSVRQLVAEVEALMAPLAQERGLRFSLEIGL 505 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 +I D ++QI LN+L+NAI FT G + TT S + + V DTG G+ Sbjct: 506 LGDIT-ASGDCTRIRQILLNLLNNAIKFTERGVVGLKLTTLGSYQGLRFEVADTGPGINV 564 Query: 751 YELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + + F Q ++ R G+GLGL + + + A G+ + S GT + P Sbjct: 565 EQKARLFQRFEQGDGARTTSRYGGSGLGLAICQELAIAMGGQIEVISRLGAGTRFVVELP 624 Query: 810 L 810 L Sbjct: 625 L 625 >gi|242280141|ref|YP_002992270.1| cache sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123035|gb|ACS80731.1| Cache sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 755 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/292 (28%), Positives = 150/292 (51%), Gaps = 17/292 (5%) Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 LG K++ LS+ ++ ++ + + W + KL+ AK+ A + KS FL Sbjct: 332 LGDIKKDYRLSV--------MTAALAILLSGLIGWVVAR-KLNAAKENAVAANHAKSQFL 382 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 A +SHEIRTP+ I+G ++++K+ P + + +Y +D +G +L ++ND+LD+SK Sbjct: 383 AVMSHEIRTPMNVILGTTDLLKDSH--PRDDQK--KYIKLLDDAGEGLLALINDILDMSK 438 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIA 708 +E+G ++L + + + ++ S+ + A++K I + +P ++ D VKQI Sbjct: 439 VEAGLLDLESIDFNPSKIMRQSCSVFEHSASQKGIELACRVDGKLPGLVQGDPVRVKQIL 498 Query: 709 LNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 LN++ NA+ FT +GG Q +N E+ ++DTG G+ + F Q + Sbjct: 499 LNLIGNAVKFTDTGGVYVQAGYKQLTNNNVELKFEIQDTGPGIPKDRQHAIFEHFTQADS 558 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 S +GTGLGL ++K + D GK + S+P G+ + + H Sbjct: 559 SITREYQGTGLGLSISKKLCDMMNGKITVSSSPGSGSTFTFTITMKEVKDSH 610 >gi|254420052|ref|ZP_05033776.1| PAS fold family [Brevundimonas sp. BAL3] gi|196186229|gb|EDX81205.1| PAS fold family [Brevundimonas sp. BAL3] Length = 709 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 81/258 (31%), Positives = 129/258 (50%), Gaps = 11/258 (4%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++E Q + L AK AE + KSDFLA +SHE+RTPL +IG + + Sbjct: 287 RDVTEHIQAEADLRAAKAEAEAANRAKSDFLANMSHEVRTPLNGVIGIVDALARTEL--- 343 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + E I SG+ + +V+D LD+SK+E+G++ L L+E + + + ++ Sbjct: 344 -SSAQREMVTLIQGSGSTLERLVSDFLDVSKVEAGRLELEIREFDLEEVLRGVLEIARIR 402 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHT 732 A+ K + R + +L D ++QI N+LSNA+ FT G +++ T Sbjct: 403 ADAKGLAFRVDYGPTARGLLQGDSVRIRQILDNLLSNAVKFTSDGEVSVRIEVLEGATPD 462 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + + VRDTGVG + + F Q + R GTGLGL + KA+V+A G+ Sbjct: 463 DPTGLSVEVRDTGVGF-DSTTATPFERFSQTDKTITRRFGGTGLGLTIVKALVEAMGGEI 521 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S P G + I+ PL Sbjct: 522 HAESQPGAGAVFSIVIPL 539 >gi|163750485|ref|ZP_02157724.1| sensory box histidine kinase/response regulator [Shewanella benthica KT99] gi|161329806|gb|EDQ00794.1| sensory box histidine kinase/response regulator [Shewanella benthica KT99] Length = 1235 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 129/250 (51%), Gaps = 8/250 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ K + L AK+ AE + +KS+FLA +SHEIRTP+ AIIG ++ + Sbjct: 694 THKDITRHKSNEVALLEAKQDAESANVYKSEFLANMSHEIRTPMNAIIGMLQLAERTELT 753 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P Y+E A + S +L I+ND+LD SKIE+GK+ L LD+ + A+ L Sbjct: 754 P-KQRDYLEKAGF---SAQSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHALDLNA 809 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 L + +K + + IL D + Q+ +N+LSNA+ FT +G ++ + Sbjct: 810 LKSQQKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQTGEIELGCEDVGERD 869 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + L+ VRDTG+G++ + F Q S + GTGLGL ++K +V G+ Sbjct: 870 HRITLKFWVRDTGIGISKEQQASLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGQM 929 Query: 793 YIFSTPAKGT 802 + S G+ Sbjct: 930 QVQSEMGVGS 939 >gi|161502574|ref|YP_001569686.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863921|gb|ABX20544.1| hypothetical protein SARI_00618 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 928 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 81/261 (31%), Positives = 131/261 (50%), Gaps = 7/261 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 422 VLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 480 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 481 PKGVDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYL 537 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K++ + ++P L D ++Q+ N+LSNAI FT G I+ + Sbjct: 538 PLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG--CIVLHVRCDGD 595 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + + VRDTGVG+ E+ + PF Q+ Q +GTGLGL + + ++ G + Sbjct: 596 YLSISVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVD 655 Query: 796 STPAKGTLIEIIFPLYDTSHP 816 S P G+ + PLY +P Sbjct: 656 SEPGMGSQFTLRIPLYGAQYP 676 >gi|71908503|ref|YP_286090.1| peptidase M52, hydrogen uptake protein [Dechloromonas aromatica RCB] gi|71848124|gb|AAZ47620.1| Peptidase M52, hydrogen uptake protein [Dechloromonas aromatica RCB] Length = 1053 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 84/246 (34%), Positives = 135/246 (54%), Gaps = 16/246 (6%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +++ L AK+ AE+ S KS+FL+ +SHE+RTPL AI+G S++ PL NP+ Sbjct: 376 EEQTRDLRQAKEQAEEASRAKSEFLSNMSHEVRTPLNAILGLSDLCLQT---PL-NPQQN 431 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANE 681 ++ + I + + +L I+ND+LD S+IE+GK+++ FE SL E +S+ L+ E Sbjct: 432 QHLSKIRLAADHLLGIINDILDFSRIEAGKLSIEKLIFELPSLLEEISD---LLIGRIEE 488 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG----GQIIISTTHTSNEE 736 K + + A R + D +KQ+ +N+L NAI F+ G G I ST H S Sbjct: 489 KNLELCVDIAAEASRSFVGDPLRLKQVIINLLGNAIKFSDQGSVRLGCRIDSTDHNST-S 547 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + V D G+G++ + F Q S R G+GLGL ++K +V+ G+ ++ S Sbjct: 548 LHFSVSDEGIGISEEQQNALFSAFSQADTSTTRRFGGSGLGLVISKRLVELMGGRIWLES 607 Query: 797 TPAKGT 802 TP G+ Sbjct: 608 TPGNGS 613 >gi|115526592|ref|YP_783503.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] gi|115520539|gb|ABJ08523.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] Length = 1123 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 84/265 (31%), Positives = 140/265 (52%), Gaps = 10/265 (3%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 +L M +I + +L AK+ AE + KS ++ +SHE+R+PL AI G++++++ Q Sbjct: 643 TLLMQEIDAHSRTDAELQRAKEAAESANLAKSRYVVGLSHELRSPLNAISGYAQLLE-QD 701 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 L PR + + RS + +++ LLDISKIE+G++ L + V L E + + + + Sbjct: 702 ASLLPKPR--DQVRQVRRSAEHLSGLIDGLLDISKIEAGRLYLSRDEVRLGEFLDQLVGM 759 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +L+A K I N +P ++ AD + ++Q+ +N+LSNAI FT G I H Sbjct: 760 FRLHAAAKNIDFVFERPNYLPPVVFADEKRLRQVLINLLSNAIKFTQQGSVHFI--MHYR 817 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPF--GQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 N +RDTG G+ +LE+ PF G + SQ GTGLGL ++K + G Sbjct: 818 NPVAEFEIRDTGPGIHAGDLERIFAPFERGALGVSQP--HTGTGLGLTISKLLSGVMGGD 875 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHP 816 + S KG+ + L + ++P Sbjct: 876 IRVSSAVGKGSTFYVKMLLSEVTNP 900 >gi|304310368|ref|YP_003809966.1| putative response regulator receiver [gamma proteobacterium HdN1] gi|301796101|emb|CBL44306.1| putative response regulator receiver [gamma proteobacterium HdN1] Length = 1044 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 139/248 (56%), Gaps = 7/248 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M DI++ + K ++ A+ +A + +KS FLA VSHEIRTP+ ++G ++++ Sbjct: 516 VMVDITDVYRAKEEVQKARDLAVSTAENKSRFLAIVSHEIRTPMNGLLGMLDLLRENN-- 573 Query: 617 PLG-NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G N + +SG +L +V+D++D ++IE+G+M H+E ++ E ++ A+++V Sbjct: 574 --GLNDEQKDTLQVAWQSGRNLLSLVDDVMDFNRIEAGEMQFHYERTNIHELLNAALTMV 631 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A ++ + + +N+P ++ D V++I N+LSNA+ FT G ++ + N Sbjct: 632 AADAYKRGLDVGLVLESNLPELVVCDAVKVRRILANLLSNAVKFTQHGSVLLWAEMLPGN 691 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + + V+DTGVG+ E ++ + F +S R G+GLGL LA+ +++A G+ + Sbjct: 692 -RLYVEVKDTGVGIGAQEQQQLFQAFVLGDSSSTRRHGGSGLGLVLAQRILEAMNGRIGV 750 Query: 795 FSTPAKGT 802 S G+ Sbjct: 751 KSIKGLGS 758 >gi|167628755|ref|YP_001679254.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1] gi|167591495|gb|ABZ83243.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1] Length = 940 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 81/261 (31%), Positives = 136/261 (52%), Gaps = 15/261 (5%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 YS + +I + + + L+ AK+ A+ S KSDFLA +SHEIRTP+ ++G E+++ Sbjct: 400 YSRNLENIVQ--ERTSALARAKEEADLASRAKSDFLATMSHEIRTPMNGMLGMLELLEAT 457 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSE 670 PL + EY + + NL+L ++ND+LD+S+IE G ++L FE S+ + Sbjct: 458 ---PLDEEQR-EYVSVVRDCSNLLLSLINDVLDLSRIEKGAVSLEEKDFETKSMKRYL-- 511 Query: 671 AISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 +SL++ A K + + F+ ++P +L D ++Q+ LN+L+NA+ FT G I Sbjct: 512 -VSLIEPMAARKGLDFVSEFSPSVPPVLRGDPVRLRQVLLNLLNNAVKFTAKG--CITLR 568 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + + E+ V DTG G+ KPF + + G GLGL + + +V+ Sbjct: 569 AYVTGNEITFEVEDTGPGILEEIRGSIFKPFTRGHSGTDSMHGGAGLGLSICRRLVELMG 628 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G +T G+L PL Sbjct: 629 GGISFETTAGVGSLFRFTVPL 649 >gi|117618949|ref|YP_856744.1| two-component system sensor protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560356|gb|ABK37304.1| two-component system sensor protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1060 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 127/238 (53%), Gaps = 12/238 (5%) Query: 573 HAKKIAEKESSH----KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 H +++A++E++ K DF+A +SHEIRTP+ AI+G + +++ G L + + Sbjct: 333 HREQLAQQEAARLARVKGDFIANMSHEIRTPMNAIMGLAYLLEQ---GGLDDGQR-ALVR 388 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIR 687 I ++G +L I+ND+LD SKIESG++ L P SL+E + +++ K + L+ Sbjct: 389 KIHQAGQALLGIINDILDFSKIESGRLELEQVPFSLEEVLDHVAAIMSTCVGNKHLELVV 448 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDT 744 +S ++ D ++Q+ LN+ NAI FT G ++ + ++ RVRDT Sbjct: 449 SSAPEQAAHLVGDALRLEQVLLNLTGNAIKFTERGEVEVRVELEAEQDGMATLLFRVRDT 508 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G+ + F Q +S R GTGLGL +++ +V+ G + S KG+ Sbjct: 509 GIGIPPEQQANIFNAFSQADSSTSRRFGGTGLGLTISRRLVNLMGGDIGVTSELGKGS 566 >gi|315126766|ref|YP_004068769.1| sensor histidine kinase/response regulator [Pseudoalteromonas sp. SM9913] gi|315015280|gb|ADT68618.1| sensor histidine kinase/response regulator [Pseudoalteromonas sp. SM9913] Length = 894 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 81/258 (31%), Positives = 136/258 (52%), Gaps = 9/258 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H + QE +L+ + A S KS FLA +SHEIRTP+T+IIG+++ I P Sbjct: 401 HKVQLRTQELQQLAEELRDA---SEAKSRFLANMSHEIRTPMTSIIGYADGIILGDIQPH 457 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 I I ++ VL ++ND+LD+SKIE+ ++ + L ++E SL+ Sbjct: 458 ERNHGIRV---ILQNSRHVLGLINDILDMSKIEANRLEIELVETDLFATIAEIESLLGKQ 514 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 +K + + + +P I++D ++QI LN+ +NA+ FT G I T + +++ Sbjct: 515 IRDKGLKFKVDYQFPLPDWIVSDPTRLRQILLNLATNALKFTSQG--YIKLTVSCNKKQL 572 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 I++V+DTG+GMT+ E + PF Q +S + GTGLGL ++K++ G ++S Sbjct: 573 IIKVKDTGIGMTDSEQKDLFTPFHQADSSISRKYGGTGLGLNISKSLATKLDGDITVYSV 632 Query: 798 PAKGTLIEIIFPLYDTSH 815 G+ L+ T H Sbjct: 633 LGSGSEFCFTMALHTTEH 650 >gi|239907358|ref|YP_002954099.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797224|dbj|BAH76213.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1062 Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 81/259 (31%), Positives = 136/259 (52%), Gaps = 15/259 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K+ + L AK AE + KS+FLA +SHEIRTPL I+G ++++ Sbjct: 663 DINERKRSQADLLSAKLQAEAANKAKSEFLANMSHEIRTPLNGILGMLQLLQTTE----P 718 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQ 676 N EY RS + +++D+LDIS+IE+G+M++ F+ L +++ E + Sbjct: 719 NEEQNEYLTGATRSTKRLTRLLSDILDISRIEAGRMDVVETEFDIYQLQDSIRE---IFY 775 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII----ISTTH 731 A K +++ + + +P +L D ++QI N++ NAI FT G ++ + ++ Sbjct: 776 TEAQGKGLVLDFIWDDELPTVLIGDEARLRQILFNLVGNAIKFTDKGEVLVEVSLLPNSN 835 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 S+ V+ V DTG+G+ L+ +PF Q S R +G GLGL + + +V G Sbjct: 836 FSSVRVLFTVSDTGIGICEEHLKYIFEPFVQAEISYTKRFQGAGLGLSIVRRLVSILGGD 895 Query: 792 FYIFSTPAKGTLIEIIFPL 810 I S +GT + + PL Sbjct: 896 ISIDSALGEGTTVYLSLPL 914 >gi|317484995|ref|ZP_07943878.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316923733|gb|EFV44936.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 1459 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/256 (33%), Positives = 130/256 (50%), Gaps = 12/256 (4%) Query: 563 EWKQEKNK--LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 E + E+N+ + A AE+ S KSDFL+R+SHEIRTP+ A+IG + + L N Sbjct: 928 EREAERNRQIIKDALTAAEQASRAKSDFLSRMSHEIRTPMNAVIGMTTIAA----ASLDN 983 Query: 621 -PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + I S +L ++ND+LD+S+IESGK+++ E V SL+ A Sbjct: 984 RDKLTDCLGKIGLSSRYLLSLINDILDMSRIESGKVSIINEEFDFRSFVEGISSLIYPQA 1043 Query: 680 NEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--NEE 736 K I+ + + R D + Q+ +NILSNA+ FTP + +S T + Sbjct: 1044 KNKNIVFDLNIEGVVDERYRGDPLRLNQVLINILSNALKFTPEWRSVHLSIRETRRVRDR 1103 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 L+ VRDTG+GM LE+ +PF Q S G+GLGL ++ ++ G + Sbjct: 1104 AYLQFIVRDTGIGMEKGLLERIFEPFEQGGASISHSYGGSGLGLAISSNLISLMNGHISV 1163 Query: 795 FSTPAKGTLIEIIFPL 810 STP G+ + PL Sbjct: 1164 SSTPGVGSEFVVELPL 1179 >gi|227889096|ref|ZP_04006901.1| histidine kinase [Lactobacillus johnsonii ATCC 33200] gi|227850325|gb|EEJ60411.1| histidine kinase [Lactobacillus johnsonii ATCC 33200] Length = 621 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 97/382 (25%), Positives = 186/382 (48%), Gaps = 44/382 (11%) Query: 444 KRKMEI---EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 +R EI E +L ++L +DG+ +R G I N G +D++ KP T Sbjct: 254 ERTQEISDSERRRLDNVLTHMTDGVIATDRHGNITIINETALDFLGKTEKDVIGKPITNL 313 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITL---GSTKEEKLL--SLRIIIKKLPFSSCYS 555 L L ++ DL T +++ + +T++E +L + +I + F S Sbjct: 314 LG----------LKDVTIQDLLSTQQELVVRVNDNTRDEMILHANFSLIQRVTGFVSGLV 363 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +HDI++ Q+KN E+E + F++ VSHE+RTPLT++ + E + + Sbjct: 364 CVLHDITQ--QQKN---------ERE---QQQFVSNVSHELRTPLTSLRAYVEALND--- 406 Query: 616 GPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 G +P ++ + I ++ ++NDLL +S+++ G + E V+L++ V+ ++ Sbjct: 407 GAWKDPNIAPKFLHVIQDETERMIRMINDLLSLSRMDRGVAKMDLEWVNLNDFVNHVLNR 466 Query: 675 VQLY-------ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 + ++K+ I+ F + + D + Q+ NI++NAI ++P GG I + Sbjct: 467 FDMMLKSDTDKMHKKKYSIKREFPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITV 526 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + + VIL + D G+G+ +L K F ++ ++ + GTGLGL ++K +V+A Sbjct: 527 RLLQ-AQKHVILSISDQGLGIPRKDLNKIFDRFYRVDKARSRKQGGTGLGLAISKEIVEA 585 Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809 + G+ + S G+ I P Sbjct: 586 HHGRIWADSAEGSGSTFYISLP 607 >gi|301064957|ref|ZP_07205311.1| PAS domain S-box protein [delta proteobacterium NaphS2] gi|300440940|gb|EFK05351.1| PAS domain S-box protein [delta proteobacterium NaphS2] Length = 914 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 101/378 (26%), Positives = 172/378 (45%), Gaps = 29/378 (7%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E +L S++ +G+ + + ++ N EDIL K F + + Sbjct: 138 EAAKLSSMISGMEEGVVFADSDNRVVEVNGYFCDFMQKTREDILGKKLEDFHSKEISDKI 197 Query: 510 NHYLTEILSLDLRQTLEKI-TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568 ++ E +T+ K ++G E +L ++ I ++ + L + +++E Sbjct: 198 VGHIGEFRKNPHSKTVVKQRSIGDA--ETILRVQPIYRENHYDGVL-LNVINVTE----- 249 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 L A++ AE S K FLA +SHEIRTP+ A+IG +E++ G + EY Sbjct: 250 --LVKARREAEAASMAKGQFLANMSHEIRTPMNAVIGMTELL----LGTDLDTEQQEYVE 303 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD-EAVSEAISLVQLYANEKRILIR 687 + + N +L ++ND+LD SKIESGK L FE ++ D V E + + + + L Sbjct: 304 IVKSAANGLLTLINDILDFSKIESGK--LEFEKIAFDLRYVIEGVGEMMAPNAQTKQLEF 361 Query: 688 TSFANNIP----RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR- 742 T F + P R+L D ++Q+ +N+ NA+ FT G + I E+ ++ +R Sbjct: 362 TCFVD--PDCEVRLLGDPERLRQVLVNLTGNAVKFTEK-GNVDIHAAMIGEEDGMVLIRF 418 Query: 743 ---DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 DTG+G+ E F Q+ S + EGTGLGL ++K +V G+ + S Sbjct: 419 AISDTGMGIPKDRQEAVFNSFTQVDGSSTRQFEGTGLGLSISKRLVALMGGRMGLDSEVG 478 Query: 800 KGTLIEIIFPLYDTSHPH 817 G+ P P Sbjct: 479 VGSTFWFTLPFAKQDQPR 496 >gi|238757450|ref|ZP_04618635.1| Multi-sensor hybrid histidine kinase [Yersinia aldovae ATCC 35236] gi|238704212|gb|EEP96744.1| Multi-sensor hybrid histidine kinase [Yersinia aldovae ATCC 35236] Length = 923 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 132/252 (52%), Gaps = 11/252 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ L+ +K++AE+ + KS+ L +SHEIRTPL +G E+++N PL +P + Sbjct: 357 KERTLALAKSKQVAEQANQRKSEHLTTISHEIRTPLNGALGAVELLQNT---PL-SPEQM 412 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + A + +L I+N+LLD S+IESG+M L E +L + +A+ + K I Sbjct: 413 QLAETARQCSFSLLAIINNLLDFSRIESGQMTLSQEKTALLPLLDQAMLTIHSLVLNKPI 472 Query: 685 LIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + T ++++P L D + +KQI +N+L NA+ FT G I +++ V D Sbjct: 473 ALSTYVSSDVPLELELDSQRLKQILINLLGNAVKFTQQGS--ISLHVCRKGQKLCFSVED 530 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG G+ + +PF Q NS +GTGLGL +A + G + S +G+ Sbjct: 531 TGCGIDPQNQLRIFQPFVQ--NSD--YAQGTGLGLTIADNLAGMMGGHLVLTSQTDRGSR 586 Query: 804 IEIIFPLYDTSH 815 +I PL +T+ Sbjct: 587 FSLILPLSETAQ 598 >gi|167644588|ref|YP_001682251.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167347018|gb|ABZ69753.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 645 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 124/252 (49%), Gaps = 6/252 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++ + L A + AE+ S KS FLA +SHEIRTPL I+ ++++ Sbjct: 239 DVTAQRAAATSLRLALEAAEQASLAKSTFLANMSHEIRTPLNGIVAGADILARSEL---- 294 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 PR E + I SG + +++++LD+ +IE+G++ + L + +L L+A Sbjct: 295 TPRVRELVDIIQTSGKSLERLLSEVLDLVRIEAGQVTIETGVFHLGDLTRSVAALCALHA 354 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 EK + + T A ++ D V+Q+ N++SNA+ FT GQ+ + ++ + Sbjct: 355 GEKGVALETRIAPAADIAVIGDGARVRQVLTNLVSNAVKFTDQ-GQVAVEVDLGADGQTR 413 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + VRDTGVG E + F Q S R GTGLGL +++ +V+ G S P Sbjct: 414 ISVRDTGVGFDPAEKARIFGRFQQADASFTRRFGGTGLGLTISRELVELMGGTLSCDSRP 473 Query: 799 AKGTLIEIIFPL 810 G+ PL Sbjct: 474 GAGSTFWFDLPL 485 >gi|332532320|ref|ZP_08408200.1| hybrid sensory kinase [Pseudoalteromonas haloplanktis ANT/505] gi|332038187|gb|EGI74633.1| hybrid sensory kinase [Pseudoalteromonas haloplanktis ANT/505] Length = 522 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 81/239 (33%), Positives = 128/239 (53%), Gaps = 16/239 (6%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 HAK+ AE +S KS+FLA +SHEIRTP++ IIG + ++ + G P EY +Y+D+ Sbjct: 2 HAKEEAEHLTSAKSEFLANMSHEIRTPMSGIIGLTNILLEK-----GLPD--EYEHYLDK 54 Query: 633 ---SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 S + +L ++ND+LD SKIESG +NL P S++ V + A K + S Sbjct: 55 IKYSSDQLLVVINDILDFSKIESGNVNLEEFPFSVNSVVDYIKATFNELAQSKGVTFDIS 114 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN--EEVIL--RVRD 743 + ++ D+ + Q+ LN+ SNAI FTP G ++I + + + V L V+D Sbjct: 115 IDEAVKLDLIGDVVRINQVLLNLCSNAIKFTPHGTVSVLIESRKLLDDPQSVCLYFTVKD 174 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+G+ L + F Q +S + GTGLGL ++K + G + ST G+ Sbjct: 175 SGIGIAEDNLSNLFESFTQADSSTTRKFGGTGLGLTISKRLCQLMGGDITVHSTQGVGS 233 >gi|300864283|ref|ZP_07109163.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300337748|emb|CBN54309.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 942 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/254 (30%), Positives = 147/254 (57%), Gaps = 27/254 (10%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L+ AKK A+ + K++FLA +SHE+RTPL I+G+++++ QR + P+ +E + Sbjct: 449 QLTEAKKNADAANQAKTEFLANMSHELRTPLNGILGYAQIL--QRSKTMA-PKELEGIDI 505 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRILI 686 + + G+ +L ++ND+LD++KIE+ K+ L+ F S + V+E + ++ A +K I Sbjct: 506 MHQCGSHLLTLINDILDLAKIEAQKLELYPKDFHFPSFLQGVAE---ISRIRAEQKSITF 562 Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG--------QIIISTTHTSNEE- 736 ++ + I AD + ++Q+ LN+L NAI FT SG +++ + +N++ Sbjct: 563 VYQPSSELATGIHADEKRLRQVLLNLLGNAIKFTDSGAVTFKVEYLEVVTNEGVQNNKQK 622 Query: 737 -------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + ++ DTGVGMT +L+K PF Q+ N+++ + EGTGLGL +++ ++ Sbjct: 623 PLSRIHKIRFQIEDTGVGMTPDQLDKIFLPFEQVGNTKR-QAEGTGLGLAISQKILQMMG 681 Query: 790 GKFYIFSTPAKGTL 803 K + S G++ Sbjct: 682 SKIQVKSQLGAGSV 695 >gi|225568759|ref|ZP_03777784.1| hypothetical protein CLOHYLEM_04838 [Clostridium hylemonae DSM 15053] gi|225162258|gb|EEG74877.1| hypothetical protein CLOHYLEM_04838 [Clostridium hylemonae DSM 15053] Length = 1113 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 81/247 (32%), Positives = 132/247 (53%), Gaps = 11/247 (4%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E K+ K L A + + KSDFL+R+SH+IRTP+ AI+G +E+ +N G+ + Sbjct: 703 EEKKAKCALEEAYASVNRANQAKSDFLSRMSHDIRTPMNAIMGMAEIARN----STGDEK 758 Query: 623 YI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 I + + ID SG +L ++N++LD+SKIESG M+L + + LD + E +V+ + Sbjct: 759 RIADCLSKIDLSGRHLLGLINEVLDMSKIESGNMSLSEDVIVLDSFLREVSEIVRPDVEQ 818 Query: 682 K-RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVI- 738 K + T + D +KQI +N+LSNA+ +T GG I +S S E + Sbjct: 819 KSQHYTVTRKEGKHSAVYGDTVRLKQILINLLSNAVKYTQEGGHISVSLEEKLSGERGVG 878 Query: 739 ---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V D G+GM+ ++K PF + +S+ + +GTGLG+ + +V G + Sbjct: 879 CFEFVVEDDGIGMSKEFIDKLFLPFERAEDSRVSQIQGTGLGMAITLNLVQMMNGTIQVD 938 Query: 796 STPAKGT 802 S +GT Sbjct: 939 SRLDEGT 945 >gi|150007327|ref|YP_001302070.1| putative two-component regulator sensor kinase [Parabacteroides distasonis ATCC 8503] gi|149935751|gb|ABR42448.1| putative two-component regulator sensor kinase [Parabacteroides distasonis ATCC 8503] Length = 771 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 132/251 (52%), Gaps = 9/251 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I K +N L A++ AE+ K FLA +SHEIRTPL AI+GFS+++ + PL Sbjct: 518 NIQRIKDTENSLIAARRKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLLNSDM--PLE 575 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 E+ + I ++ +L+L ++ND+LD+S+IESG M+ +E + L + + + QL Sbjct: 576 PEEKAEFIDLITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMM 635 Query: 680 NEK-RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 E + IR I R +D + Q+ N ++NA+ FT G I + ++ Sbjct: 636 PEGVELKIRVPHEPLIIR--SDHFRLTQVCTNFINNAVKFTAKGYIEIGYELSADGKSIL 693 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V+DTG G+ + + EK + F ++ Q GTGLGL + +++V G + S Sbjct: 694 ISVKDTGKGIPDDKKEKVFERFQKLDEFAQ----GTGLGLAICQSIVHTFHGSISLESEV 749 Query: 799 AKGTLIEIIFP 809 G++ I P Sbjct: 750 GVGSMFTISLP 760 >gi|110598538|ref|ZP_01386807.1| PAS:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] gi|110339842|gb|EAT58348.1| PAS:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] Length = 596 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 134/232 (57%), Gaps = 6/232 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVND 643 + DF++ VSHE+RTPLT+I G++E + G + P + + I + + +VND Sbjct: 364 RRDFVSSVSHELRTPLTSIKGYTETLLE---GAMHEPEHASAFLKIILQESEQLTALVND 420 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 +LD+S+IESG++ HF V L +++++ ++L +K + + S A+++P++ AD Sbjct: 421 VLDLSRIESGRIEYHFSAVDLRTVIAKSVDQLRLALEKKAVRLDVSIADDMPQLHADSGY 480 Query: 704 VKQIALNILSNAIHFTPS-GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 ++ + N+L NAI + + G+I IS + + V L V D G+G++ +L + + F + Sbjct: 481 LEIVVRNLLDNAIKYVDAEHGKIRIS-AFRNGDFVQLDVEDNGIGISKQDLGRIFERFYR 539 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + ++ GTGLGL + K +V A+ G + S ++G++ ++FP+ S Sbjct: 540 VDKARSRELGGTGLGLAIVKHIVLAHKGHVEVRSRVSQGSVFSVLFPVVADS 591 >gi|90579036|ref|ZP_01234846.1| Hypothetical sensor protein TorS [Vibrio angustum S14] gi|90439869|gb|EAS65050.1| Hypothetical sensor protein TorS [Vibrio angustum S14] Length = 971 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/239 (31%), Positives = 129/239 (53%), Gaps = 7/239 (2%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A+ AEK + KS FLA +SHEIRTP+ ++G + ++ + + + Y + I+RS Sbjct: 459 ARDEAEKANRAKSSFLATMSHEIRTPMNGVLGTASLLADTQL----TSQQKRYLDVINRS 514 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +LDI+ND+LD SKIE+G +++ S+ V++ S+++ A KRI + + Sbjct: 515 GETLLDILNDILDYSKIEAGHLDIRPSNFSVVRMVTDVSSMLEGRALAKRIGLECHISPQ 574 Query: 694 IPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVGMTNY 751 + + D ++Q+ +N++ NAI FT +G I H +E++ V+DTG+G+ Sbjct: 575 VEGMWFGDESRIRQVLVNLVGNAIKFTDTGKVSIFVEPHPDMPDELLFSVKDTGIGIDQE 634 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 E F Q ++ EGTGLGL ++K +V A G+ + S +G+ PL Sbjct: 635 EQNILFSAFQQAEAGRK-SIEGTGLGLAISKHIVAAMDGEIGLESVVGEGSCFWFALPL 692 >gi|60681532|ref|YP_211676.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] gi|60492966|emb|CAH07744.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] Length = 899 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 86/286 (30%), Positives = 137/286 (47%), Gaps = 14/286 (4%) Query: 528 ITLGSTKEEKLLSL---RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 I G K LL L +I+++ FS DI++ + + +L +K+ AE Sbjct: 452 IMEGKDKNGNLLILDKQKIMVESEDFSPIIVSIEWDITQLELMRRELIESKEKAETSDKL 511 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTPL AI+GFS +I EY +D + +L ++N++ Sbjct: 512 KSAFLANMSHEIRTPLNAIVGFSRIISESD----NAEERREYYEIVDANNERLLQLINEI 567 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+SKIESG + + PV L E I ++ + + +R + I +D + Sbjct: 568 LDLSKIESGIVEFTYGPVRLHPLCKE-IHDAHVFRCPQGVELRFDSPDEALSIHSDKNRI 626 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 Q+ N++ NA FT G + E V+ V+DTG+G+ +L + + F ++ Sbjct: 627 FQVFSNLIGNAFKFTTEGS--VSYGYKQEGERVVFYVKDTGLGIEPEKLGRVFQRFAKLN 684 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 N Q GTGLGL + K +++ G+ + S GT PL Sbjct: 685 NFAQ----GTGLGLSICKTIIERLGGEIAVSSEVGTGTTFTFWLPL 726 >gi|260771196|ref|ZP_05880123.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio furnissii CIP 102972] gi|260613793|gb|EEX38985.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio furnissii CIP 102972] Length = 1113 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 120/227 (52%), Gaps = 4/227 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +FLA SHE+RTPL +IG +E + + GP+ N + + I SG + +V+DL Sbjct: 443 KDEFLATTSHELRTPLHGMIGIAEALTSGANGPI-NAAHKYQLDIIISSGQRLATLVDDL 501 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703 LD K+ G +++H V+L A + L +K+I I A P + AD + Sbjct: 502 LDYHKMRYGNLDIHRTAVNLSNATRLVLELSNHLLGKKQIRIINQVAEEAPVWVSADAQR 561 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 ++Q+ N++ NAI +T S G+I+IS T ++ + ++V DTG G+ +LE +P Q Sbjct: 562 LEQVLYNLIGNAIKYT-SEGKIVISATRV-DQHIRVQVVDTGQGIPAEQLEHIFEPLIQA 619 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + +G GLGL +++ +++ G Y+ S P GT P+ Sbjct: 620 GHDTSRYRQGAGLGLSISRQLIELMQGSLYVSSQPMVGTTFSFTLPM 666 >gi|260223388|emb|CBA33904.1| hypothetical protein Csp_B21370 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 393 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/246 (32%), Positives = 128/246 (52%), Gaps = 26/246 (10%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KSDFL+ +HE+RTPL +I GF+E++ + GP + E I R ++D++N+L Sbjct: 154 KSDFLSAAAHELRTPLASIYGFAELMLVRTLGP---EKQKELLGTIHRQAKSLIDLINEL 210 Query: 645 LDISKIES--GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702 LD+S+IE+ GK +L+ L V + + Y EK +L+ + ++AD Sbjct: 211 LDLSRIEARQGK-DLNIVSCPLAALVDSTVGGLH-YKAEKHLLV-CDLRHGAFMVMADPE 267 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTT---HTSNEEVILRVRDTGVGMTNYELEKAMK- 758 +Q LN+LSNA+ ++P GG + IST ++V ++VRD G+GM + +A + Sbjct: 268 KTRQALLNVLSNAVKYSPQGGTVTISTALRGVGGQQQVGVQVRDEGMGMDEAQCSRAFER 327 Query: 759 -----PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 P G IP GTGLGL L + ++ G+ + S P GT + + P + Sbjct: 328 FYRAHPLGDIP--------GTGLGLSLVQEIMQLQQGEAELSSAPGAGTTVTLWLPSQEL 379 Query: 814 SHPHDC 819 P DC Sbjct: 380 L-PDDC 384 >gi|300867145|ref|ZP_07111810.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] gi|300334846|emb|CBN56976.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] Length = 886 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 139/244 (56%), Gaps = 10/244 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ +L+ AK+ A+ + KSDFLA +SHE+RTPL I+G+++++ + P + Sbjct: 406 KERTAELTIAKEAADNANQAKSDFLANMSHELRTPLNGILGYAQILGRAKTLP---EKER 462 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I + G+ +L ++ND+LD+SKIE+ K+ L + + L + + + ++ +++K I Sbjct: 463 HGVSIIHQCGSHLLTLINDVLDLSKIEARKLELTPKAIHLPSFLQGVVEICRVRSDQKGI 522 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHTSNEEVI 738 N+P I+ D + ++Q+ LN+L NAI FT G ++I S ++ Sbjct: 523 EFIYQPDINLPTGIITDEKRLRQVLLNLLGNAIKFTDKGSITLKVEVIASNATMPLPQLK 582 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +V DTGVG+ + ++ K + F Q+ + ++ + EGTGLGL +++ +V+ GK + S Sbjct: 583 FQVLDTGVGIASDQVNKLFQEFEQVGDRKR-QAEGTGLGLAISQKIVELMGGKIEVESHL 641 Query: 799 AKGT 802 G+ Sbjct: 642 GIGS 645 >gi|222098049|ref|YP_002532106.1| phosphate regulon sensor protein [Bacillus cereus Q1] gi|221242107|gb|ACM14817.1| phosphate regulon sensor protein [Bacillus cereus Q1] Length = 587 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 96/376 (25%), Positives = 181/376 (48%), Gaps = 48/376 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR+ + F E+ L + + + + P Sbjct: 240 EMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKETFHVTDEEYLDRLY--YESFHHPE 297 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 ++ + +E+I + K K + L + I++ F Sbjct: 298 II-------------ELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGAPIIGTNHEWKGI 344 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL +K DFLA VSHE++TP+T+I GFSE + + Sbjct: 345 VLVFHDITELK----KLEQMRK----------DFLANVSHELKTPITSIKGFSETLLD-- 388 Query: 615 FGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + N ++ E + + I + + ++ DLLD+SKIE L+ V + + + Sbjct: 389 -GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGTVDMKGLLEDIHM 447 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+GG + + Sbjct: 448 VLDNKAGEKEISLQVNALKRVS-VIGDPSRLQQIFINLMNNAIVYTPAGGVVSVELVEDK 506 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 I +V DTG+G++ E+ + + F ++ ++ GTGLGL + K +V+A+ G Sbjct: 507 YNAYI-KVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIVKHLVEAHHGTIT 565 Query: 794 IFSTPAKGTLIEIIFP 809 + S +GT ++ P Sbjct: 566 VDSEIGEGTTFTVVLP 581 >gi|87308220|ref|ZP_01090362.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645] gi|87289302|gb|EAQ81194.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645] Length = 1259 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/268 (29%), Positives = 145/268 (54%), Gaps = 19/268 (7%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y T+ DI+E ++ +L+ K AE + KS FLA +SHEIRTPL +IGF +++ Sbjct: 564 YEGTVEDITEHRKAL-QLTDEIKAAEAANEAKSTFLASMSHEIRTPLNGVIGFLDLLHTT 622 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + R++E A S + +L ++ND+LD+SKIE+G + L L + + S Sbjct: 623 KLDD-QQGRFVELAK---SSASSLLHLINDILDLSKIEAGGIELEQTEFVLTDLIE---S 675 Query: 674 LVQLYANEKRIL---IRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQII--- 726 + +++A + R+ + +S A ++P+ + D ++Q+ +N+ +NA+ FT +GG + Sbjct: 676 VPEMFAPQCRMTGLELNSSVATDVPQAAIGDCERIRQVLVNLFANAVKFTETGGVYLRVE 735 Query: 727 ----ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 ++++H + + V DTG+G+ ++++ K F Q+ S GTGLGL + K Sbjct: 736 RERSVASSHDAIARIRFSVEDTGIGVPRSKMQRLFKAFSQVDASTTRSYGGTGLGLAICK 795 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +V+ G+ + S KG+ PL Sbjct: 796 QLVELMGGEIGVESEVGKGSTFWFTLPL 823 >gi|21232277|ref|NP_638194.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767589|ref|YP_242351.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. 8004] gi|21114041|gb|AAM42118.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572921|gb|AAY48331.1| histidine kinase/response regulator hybrid protein [Xanthomonas campestris pv. campestris str. 8004] Length = 1194 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 128/241 (53%), Gaps = 8/241 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S K+ FLA + HE+RTP+T ++G SE++ + + + Y I R Sbjct: 812 HKQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTQL----DHKQRSYTESIRR 867 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--RILIRTSF 690 +G+ +L +VND LD+++IESG++ L +P S+ + V+E +L+ A E+ R + Sbjct: 868 AGSHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEALMAPLAQERGLRFSLEVGL 927 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 +I D ++QI LN+LSNAI FT G + +T S + + V DTG G+ Sbjct: 928 LGDI-TASGDPTRIRQILLNLLSNAIKFTERGVVGLKLSTLGSYQGLRFEVADTGPGINA 986 Query: 751 YELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + + F Q ++ R G+GLGL + + + A G + S GT + P Sbjct: 987 DQKARLFQRFEQGDGAKTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTRFVVDLP 1046 Query: 810 L 810 L Sbjct: 1047 L 1047 >gi|134299130|ref|YP_001112626.1| integral membrane sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1] gi|134051830|gb|ABO49801.1| integral membrane sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1] Length = 916 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 81/263 (30%), Positives = 136/263 (51%), Gaps = 13/263 (4%) Query: 563 EWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 E +Q+ +L AK E+++SH KS+FL+ +SHE+RTPL +++ + ++ + Sbjct: 479 ESEQKTIELQKAKTALEEQASHLALSSQYKSEFLSNMSHELRTPLNSLLILARILVENKD 538 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L +P+ +EYA I SGN +L+++ND+ D++KIE+GK+ + E +SL E + Sbjct: 539 GNL-SPKQVEYAETILSSGNDLLNLINDIFDLAKIEAGKLIVKPEQISLTELIYTLERQF 597 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG--GQIIISTTHT 732 Q A +K + N+IP+ D + QI N+LSNA FT G + T Sbjct: 598 QPIARQKLLDFTIQLDNDIPKTFFTDKNRLMQILKNLLSNAFKFTNEGCVNLHVQRATKI 657 Query: 733 SNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 S + +++ V DTG+G+ + + F Q + + GTGLGL + + + G Sbjct: 658 SEKGTQIVFSVSDTGIGIAKDKQALIFEAFQQGDGTTSRKFGGTGLGLSICRELAGLLGG 717 Query: 791 KFYIFSTPAKGTLIEIIFPLYDT 813 + S KG+ + P YD Sbjct: 718 FIELQSIKGKGSTFSVYIPTYDV 740 >gi|323495545|ref|ZP_08100619.1| putative two-component regulatory system multi-sensor hybrid histidine kinase [Vibrio sinaloensis DSM 21326] gi|323319426|gb|EGA72363.1| putative two-component regulatory system multi-sensor hybrid histidine kinase [Vibrio sinaloensis DSM 21326] Length = 1198 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 81/244 (33%), Positives = 128/244 (52%), Gaps = 20/244 (8%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS------EVIKNQRFGPLGNPR 622 NKL+ A+ A + KSDFLA +SHEIRTP+ AIIG S ++ K QR Sbjct: 465 NKLAIARDEANSANRAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTKAQR-------- 516 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y + + S + +L ++ND+LD SKIE+GK+++ L+ + +LV L A+E+ Sbjct: 517 --NYIHKVKLSADSLLGLINDILDFSKIEAGKLDIEQVDFQLENVLDNISNLVGLRASER 574 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL- 739 + + ++P L D + Q+ +N+ +NA+ FT G +I +S S E + L Sbjct: 575 GLELLIHIERDVPTALVGDPLRLGQVLINLSNNAVKFTERGEIKITVSVAERSGENIRLK 634 Query: 740 -RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 RV D+G+GMT + +K F Q +S + GTGLGL ++K + G + S Sbjct: 635 FRVSDSGIGMTPEQTQKLFSKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIQVESEA 694 Query: 799 AKGT 802 G+ Sbjct: 695 GVGS 698 >gi|299537174|ref|ZP_07050477.1| two-component hybrid sensor and regulator [Lysinibacillus fusiformis ZC1] gi|298727415|gb|EFI67987.1| two-component hybrid sensor and regulator [Lysinibacillus fusiformis ZC1] Length = 914 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 129/234 (55%), Gaps = 7/234 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+ ++ VSHE+RTPL++++GF+E++ + P R +Y + I R + +++ND Sbjct: 579 KSELVSTVSHELRTPLSSVLGFTELLLTKNIKP---ERQNKYIDTIHREAVRLTNLINDF 635 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+ ++ESGK + E + L+E A +V + +E++ + + AD + Sbjct: 636 LDLQRMESGKQQYNMETLQLNEI---AFEIVNRFRHEQKHNVHLIDKAREVYVNADQDRL 692 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 Q+ +N++ NAI F+P GG + I N + + ++D G+G++ ++ + + F +I Sbjct: 693 VQLFINLIGNAIKFSPQGGDVEI-LLENKNNSIQVSIKDEGIGISKQDIAQLFQKFKRID 751 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 NS + + GTGLGL + + ++ + G+ +I S +GT + PL + + D Sbjct: 752 NSLRRKIGGTGLGLSICREIILKHEGEIWIESEEGQGTTVYFTLPLANNTITFD 805 >gi|284041098|ref|YP_003391028.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283820391|gb|ADB42229.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 952 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/260 (31%), Positives = 135/260 (51%), Gaps = 10/260 (3%) Query: 555 SLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 S+++H D++E KQ +++L+ AK+ AE+ + F A +SHEIRTPL AIIG S ++ + Sbjct: 423 SMSIHYDMNERKQLEHELARAKQYAEEAQQAEKQFFANMSHEIRTPLNAIIGMSHLLYDT 482 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + P R EY N + S + + +++DLLD++KIE+G + +H P L + Sbjct: 483 Q--PSAQQR--EYINILKTSADFLHSLISDLLDMTKIEAGHIEVHARPFDLAGLLRSTQK 538 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH 731 + ++ + I I I + D + QI +N++ NA FT G QII Sbjct: 539 VFEMKLQGRPISIDVLLDTRITNAFVGDDVMLNQIMMNLVGNAEKFTEEGQIQIIGKVKK 598 Query: 732 TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 ++ + V DTGVG+ ++ K F Q+ NSQ + +GTGLGL + K +V+ Sbjct: 599 EEGDKTWIEFTVSDTGVGIPADKIGLVFKKFKQV-NSQGYKHKGTGLGLAITKELVELQG 657 Query: 790 GKFYIFSTPAKGTLIEIIFP 809 G + S G+ + P Sbjct: 658 GTISVKSQEGVGSSFTFVIP 677 >gi|327439034|dbj|BAK15399.1| signal transduction histidine kinase [Solibacillus silvestris StLB046] Length = 899 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/256 (29%), Positives = 134/256 (52%), Gaps = 10/256 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ + +L + + + S++KS+FLA +SHE+RTPL +I+ SE++ L + Sbjct: 482 ELEKVQVELRQSAEQLRQSSNYKSEFLANMSHELRTPLNSILILSEMLAENHENHLSDDE 541 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +EYA I SG +L+++ND+LD+SK+E+GKM+L F + + E +L AN+K Sbjct: 542 -LEYAKVIHDSGEDLLNLINDILDLSKVEAGKMDLWFREMDVYEIPQHIQNLFMPIANQK 600 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG--------GQIIISTTHTS 733 + + AN++ I D++ Q+ N+LSNA+ FT G +I + S Sbjct: 601 GLELSVDVANDLAEIFHTDVKRFHQVLNNLLSNALKFTEEGSVTVKVDRARITPAMRQLS 660 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + + + V DTG+G+ + + F Q + + GTGLGL + + + G Sbjct: 661 DTWITVSVTDTGIGIPKNKQNIVFESFQQADGATVRKYGGTGLGLSICREVTKLLGGWIT 720 Query: 794 IFSTPAKGTLIEIIFP 809 + ST +G+ + P Sbjct: 721 LSSTEGQGSTFTVYLP 736 >gi|261253892|ref|ZP_05946465.1| BarA sensory histidine kinase [Vibrio orientalis CIP 102891] gi|260937283|gb|EEX93272.1| BarA sensory histidine kinase [Vibrio orientalis CIP 102891] Length = 929 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/251 (31%), Positives = 127/251 (50%), Gaps = 8/251 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ Q +Y Sbjct: 275 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFT----RQMLKTTLTNSQTDYLQT 330 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+ S N +L+I+ND+LD SK+E+GK+ L P ++ E ++L A+EK + + Sbjct: 331 IENSANNLLNIINDILDFSKLEAGKLALENIPFDFQASLEEVVNLQATSAHEKGLELTLK 390 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTG 745 +P ++ D ++Q+ N++ N+I FT G I + E E+ VRDTG Sbjct: 391 IDPKVPAGLVGDPLRIQQVLTNLVGNSIKFTERGNIDISVELRSQKEDSVELQFMVRDTG 450 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 IGISERQQSQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFW 510 Query: 806 IIFPLYDTSHP 816 L T P Sbjct: 511 FTLRLSSTDMP 521 >gi|256840539|ref|ZP_05546047.1| two-component hybrid sensor kinase/response regulator [Parabacteroides sp. D13] gi|256737811|gb|EEU51137.1| two-component hybrid sensor kinase/response regulator [Parabacteroides sp. D13] Length = 795 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 84/280 (30%), Positives = 146/280 (52%), Gaps = 18/280 (6%) Query: 546 KKLPFS------SCYSLTMHDISEWKQEKNK---LSHAKKIAEKESSHKSDFLARVSHEI 596 KKL FS + LT DI E ++E+ + L A ++A+ + KSDFL+R+SH+I Sbjct: 237 KKLRFSFFDKERNILLLTRTDIMEVREEERQRQLLQDALQVAKSANQAKSDFLSRMSHDI 296 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTP+ AIIG + + R ++ I S L+L+++N++LD+SK+ESG + Sbjct: 297 RTPMNAIIGMTTI---ASMHIDDRERIVDCLKKIMVSSKLLLNLINEVLDMSKVESGHIL 353 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNA 715 L E + E + I++VQ ++K R F +++ D++ ++Q+ LN+LSNA Sbjct: 354 LTDEEFDMGELLQSVITMVQTSVSQKFQDFRVHLFQIKHEKLIGDVQRIQQVLLNLLSNA 413 Query: 716 IHFTPSGGQIIISTTH----TSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 I +TP G+I + N + + V D G+G+ L K +PF + ++ Sbjct: 414 IKYTPDYGKITLEIREKPIKNGNYGLFEVTVIDNGIGIKPDFLHKVFEPFERAEDATLRN 473 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +GTGLG+ +++ + G+ + S KG++ L Sbjct: 474 IQGTGLGMAISRNIAHMMNGEILVESEYGKGSVFTFTMQL 513 >gi|110596980|ref|ZP_01385270.1| PAS [Chlorobium ferrooxidans DSM 13031] gi|110341667|gb|EAT60127.1| PAS [Chlorobium ferrooxidans DSM 13031] Length = 999 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 125/226 (55%), Gaps = 14/226 (6%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTP+ +IG ++++ R + R Y I+ SG +L I+ND+ Sbjct: 344 KSQFLANMSHEIRTPMNGVIGMADLLLETRLST--DQR--NYVEIINGSGRNLLKIINDI 399 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--RILIRTSFANNIPRIL-ADL 701 LD SKIE+ + L L + + E ++ L A +K +L+ T F ++P L D Sbjct: 400 LDFSKIEARMLELDAIDFDLFDLLEEICGVLGLEARDKGLELLLITGF--DLPFSLKGDP 457 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTT--HTSNEEVILR--VRDTGVGMTNYELEKAM 757 ++QI +N++ NA+ FTP GG++++ ++ ++R VRDTG+G++ +L+K Sbjct: 458 ARIRQILVNLIGNALRFTPEGGEVVLKVMVQQQTDRNAVIRFNVRDTGIGISADKLQKIF 517 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGT 802 +PF Q S + GTGLGL ++ +V G ++ S P G Sbjct: 518 EPFTQADGSNIRKFGGTGLGLSISNDLVLKMGGGGIHVESEPGSGA 563 >gi|317129906|ref|YP_004096188.1| multi-sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315474854|gb|ADU31457.1| multi-sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 592 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 100/376 (26%), Positives = 190/376 (50%), Gaps = 50/376 (13%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L ++++ G+ +IN +G I N+ +F ++NT Sbjct: 243 EVQQDRLETLIDNMGSGLLLINSKGDITLVNKTCQSIF----------------QENTDH 286 Query: 508 VMNH-YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF--------SSCYSLT- 557 +N Y I ++ + +++I L + +K L+L I I+ F S SLT Sbjct: 287 WINKLYYQVIKHREVIKFIQEILLTEKRIKKHLALPIGIEIRHFDVYGAPIIGSDLSLTG 346 Query: 558 ----MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 HDI+E K KL A+K DF+A VSHE++TP+T++ GF+E + + Sbjct: 347 IVLVFHDITELK----KLEQARK----------DFVANVSHELKTPVTSLKGFTETLLS- 391 Query: 614 RFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 G + + + E + I + +++DLL++SKIE + L+++ V++D +S+ Sbjct: 392 --GAVHDEQLREKFLTIISNESERLESLIHDLLELSKIEGSQFVLNWDLVNIDVLLSDVF 449 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +++ A K I + I AD +KQ+ +NI++NAI +TP+ G++ + Sbjct: 450 MMLESKAQNKNIHFSKEVIGD-TVIEADAHRIKQVFINIINNAIMYTPNDGEVHVKVIEK 508 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + E VI+ V+DTG+G++ E+ + + F ++ ++ GTGLGL + K +++A+ Sbjct: 509 A-ETVIVEVQDTGIGISKKEIPRIFERFYRVDRARSRNSGGTGLGLAIVKHLIEAHRATM 567 Query: 793 YIFSTPAKGTLIEIIF 808 + S +GT ++ F Sbjct: 568 SVDSEVGQGTTFKMEF 583 >gi|260768445|ref|ZP_05877379.1| signal transduction histidine kinase [Vibrio furnissii CIP 102972] gi|260616475|gb|EEX41660.1| signal transduction histidine kinase [Vibrio furnissii CIP 102972] Length = 577 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/252 (31%), Positives = 130/252 (51%), Gaps = 14/252 (5%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+++AE+ + KS FLA +SHE+RTPL A++G +++++ + + Sbjct: 195 ELKVAQQLAEQANQSKSQFLAMMSHELRTPLNAVLGLIDLLRDD-----SDAYQQDMLEQ 249 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL--IR 687 ++ S L+L I+ND+LD+S+IESG L +SL + A+ A K I ++ Sbjct: 250 MENSAELLLVIINDILDLSRIESGHFELQRHWISLSRKLQHALEYHSQVAQAKDITFNVK 309 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 S + +R + QI NI+ NAI FT G + + T+ + + + V+D+G+G Sbjct: 310 ASICEQFEYWVDSVR-LTQILFNIIGNAIKFTHHG--FVDVSLVTARDRLEIEVKDSGIG 366 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + N +E PF Q S GTGLGL + K +V+ G + S +G+L I Sbjct: 367 IDNERIEHLFSPFIQADTSITRNYGGTGLGLAITKHLVELMGGSITVSSKLGEGSLFTIS 426 Query: 808 FPLY----DTSH 815 PL +TSH Sbjct: 427 IPLQSRSSETSH 438 >gi|158335032|ref|YP_001516204.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] gi|158305273|gb|ABW26890.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] Length = 1514 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/258 (29%), Positives = 139/258 (53%), Gaps = 13/258 (5%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 N+ +K+ A+ S KSDFLA +SHE+RTPL AI+G+ E++ QR LG + E+ Sbjct: 847 NQAQQSKEAADAASQAKSDFLAHMSHELRTPLNAILGYVEIM--QRDPQLGETQ-TEHLG 903 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I RSG +L ++ND+L++S+IE+G++ L L + +++ A + + + Sbjct: 904 IIGRSGEHLLSLINDVLEMSRIEAGQLALTQVSFDLYRLLDSLQDMLEAKAKLQGLQLYF 963 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNE-----EVILRV 741 + +P+ + AD ++Q+ +N+L N +++T G ++ + T S + ++ V Sbjct: 964 ERSATVPQFVFADEGKLRQVLINLLGNGLNYTEKGQVLLQVDTPEQSGQPGRACQLTFAV 1023 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG G+ ++++ + F Q + + + EGTGLGLP+++ V G + ST +G Sbjct: 1024 MDTGPGIKASDVDQLFEAFTQTDSGYRAQ-EGTGLGLPISRRFVQLMGGDIEVDSTVGQG 1082 Query: 802 TLIEIIFP--LYDTSHPH 817 + P L D + H Sbjct: 1083 STFRFTIPVTLADAAEVH 1100 >gi|315180156|gb|ADT87070.1| sensor histidine kinase/response regulator [Vibrio furnissii NCTC 11218] Length = 579 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/252 (31%), Positives = 130/252 (51%), Gaps = 14/252 (5%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+++AE+ + KS FLA +SHE+RTPL A++G +++++ + + Sbjct: 195 ELKVAQQLAEQANQSKSQFLAMMSHELRTPLNAVLGLIDLLRDD-----SDAYQQDMLEQ 249 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL--IR 687 ++ S L+L I+ND+LD+S+IESG L +SL + A+ A K I ++ Sbjct: 250 MENSAELLLVIINDILDLSRIESGHFELQRHWISLSRKLQHALEYHSQVAQAKDITFNVK 309 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 S + +R + QI NI+ NAI FT G + + T+ + + + V+D+G+G Sbjct: 310 ASICEQFEYWVDSVR-LTQILFNIIGNAIKFTHHG--FVDVSLVTARDRLEIEVKDSGIG 366 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + N +E PF Q S GTGLGL + K +V+ G + S +G+L I Sbjct: 367 IDNERIEHLFSPFIQADTSITRNYGGTGLGLAITKHLVELMGGSITVSSKLGEGSLFTIS 426 Query: 808 FPLY----DTSH 815 PL +TSH Sbjct: 427 IPLQSRSSETSH 438 >gi|148975728|ref|ZP_01812559.1| hypothetical protein VSWAT3_26471 [Vibrionales bacterium SWAT-3] gi|145964801|gb|EDK30053.1| hypothetical protein VSWAT3_26471 [Vibrionales bacterium SWAT-3] Length = 839 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 90/251 (35%), Positives = 132/251 (52%), Gaps = 12/251 (4%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q +L AK+ A + KS FLA +SHEIRTPL IIG +E++ + P N + E Sbjct: 328 QHNQELVEAKEDAVSANKAKSAFLANMSHEIRTPLNGIIGMAEILSQSKLSP--NQQ--E 383 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I+ S + +L ++ND+LD+SKIESG + L L EAV +++S++ A K I Sbjct: 384 VLGDIESSSHSLLVLLNDILDLSKIESGNLMLSPHNADLREAVYDSVSVILSKAISKDIE 443 Query: 686 IRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVILR 740 + + + P++ D V+Q+ N+LSNAI FT S G I +T ++ Sbjct: 444 LDVNIDSQTPPQLFFDEYRVRQVLTNLLSNAIKFT-SNGTITTDIAYTPMSMGRGKLECS 502 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+G+ +LE +PF Q S + GTGLGL + + +VD G YI + K Sbjct: 503 VSDTGIGIEPEKLESIFEPFTQEDGSITRQFGGTGLGLAICRQLVDLMGG--YITARSVK 560 Query: 801 GTLIEIIFPLY 811 G F LY Sbjct: 561 GEGSTFTFCLY 571 >gi|148979130|ref|ZP_01815338.1| Probable sensor/response regulator hybrid [Vibrionales bacterium SWAT-3] gi|145961996|gb|EDK27285.1| Probable sensor/response regulator hybrid [Vibrionales bacterium SWAT-3] Length = 572 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 123/249 (49%), Gaps = 7/249 (2%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 N+ ++K AE+ DF+A ++HE+RTPL ++G +E+I + N E N Sbjct: 189 NRNIESRKRAEESERATRDFVAMINHELRTPLNGLLGSAELISDTEL----NSSQREIVN 244 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + +SG + I+NDLLD SKI +G + L + SL + + S+ A EK++ Sbjct: 245 NLSQSGEFLRTIINDLLDYSKINAGMLELIPKKFSLHDLRNTIESIFTNRAIEKQLDFNI 304 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 S A+++P DL + Q+ +N++ NAI FT G + S++ + V DTGVG Sbjct: 305 SVASDVPSHFKGDLERITQLFVNLIGNAIKFTEEGH--VNVDIEWSDQHFVFSVEDTGVG 362 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + +PF Q NS EGTGLGL + + +V G + S GT I Sbjct: 363 IAESAYKTLFEPFTQADNSSSRNYEGTGLGLAICRKLVGLMDGDIGVTSIVGSGTTFTIS 422 Query: 808 FPLYDTSHP 816 PL P Sbjct: 423 VPLQVVDVP 431 >gi|146284197|ref|YP_001174350.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri A1501] gi|145572402|gb|ABP81508.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri A1501] Length = 1170 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 126/232 (54%), Gaps = 3/232 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ S +KS+FLA +SHE+RTPL + + ++++ + G L + + +++A I +GN +L Sbjct: 486 QRASRYKSEFLANMSHELRTPLNSSLILAKLLADNPDGNLSDDQ-VQFARSIYSAGNDLL 544 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRI 697 ++ND+LDISK+E+GK+ +H E L V +L A EK + A+++ P + Sbjct: 545 TLINDILDISKVEAGKLEVHPELTILSRLVDGMKNLFLPQAMEKALSFSVELADDLPPTL 604 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + ++QI N+L+NA FT G + + + VRDTG+G+ + Sbjct: 605 FTDRQRLEQILKNLLANAFKFTEKGS-VTLRVEPRDGGMLAFAVRDTGIGIAPEQQAAIF 663 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q + R GTGLGL +++ + + G+ + S P G+ ++ P Sbjct: 664 EAFRQADGTTNRRYGGTGLGLSISRELANLLGGQIEVQSAPGAGSTFTLVLP 715 >gi|298529159|ref|ZP_07016562.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510595|gb|EFI34498.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1547 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/254 (31%), Positives = 129/254 (50%), Gaps = 14/254 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+E Q++ +L A A+ S KS+FLA +SHEIRTP+ +IG + ++ Sbjct: 816 QDITERVQDQERLRIATMQADAASRAKSEFLANMSHEIRTPMNGVIGMTGLLLETDL--- 872 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N YA + SG +L ++ND+LD SKIESGK+ L L + + S++ Sbjct: 873 -NETQRRYAETVRSSGQALLALLNDILDFSKIESGKLELEALNFDLRDTLDNFASMMAFK 931 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST-------T 730 A EK + S ++P ++ D ++QI N++ NA+ FT G ++ + + Sbjct: 932 AEEKGLEFICSADPDVPDNLIGDPGRIRQILTNLVGNAVKFTERGEVVVRVSIQESGVRS 991 Query: 731 HTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 S E +L VRDTG+G+ ++ + F Q+ S + GTGLGL ++K + + Sbjct: 992 QESQEFCMLHFSVRDTGIGIPADKVGDLFQSFSQVDASITRKFGGTGLGLAISKQLAEMM 1051 Query: 789 MGKFYIFSTPAKGT 802 G + S +GT Sbjct: 1052 GGDVGVDSVEGQGT 1065 >gi|220907213|ref|YP_002482524.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219863824|gb|ACL44163.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1965 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 127/241 (52%), Gaps = 12/241 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ++ +Q+ L+ A ++ K +FLA +SHE+R+PL I+G+++++++Q F P Sbjct: 1575 VASLEQQTEDLARANRV-------KDEFLAVLSHELRSPLNPILGWTKLLQSQSFSPDKA 1627 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + + I+R+ L ++ DLLD+S+I GKM L+ V+L + A+ V+L A Sbjct: 1628 AKALAT---IERNAKLQAQLIEDLLDVSRILQGKMVLNVTSVNLGSVIEAALETVRLAAE 1684 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K I + T I IL D ++QI N+L+NA+ FTP GGQ+ + + L+ Sbjct: 1685 AKAIQLETLMEPEIDPILGDPARLQQIVWNLLTNAVKFTPQGGQVTVRLQRV-DTFAQLQ 1743 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+DTG G++ L F Q + + G GLGL + + + + + G +P + Sbjct: 1744 VQDTGKGISPAFLPHVFDYFRQEDGTTTRKFGGLGLGLAIVRHLTEQHGGTVAA-DSPGE 1802 Query: 801 G 801 G Sbjct: 1803 G 1803 >gi|238752347|ref|ZP_04613825.1| Multi-sensor hybrid histidine kinase [Yersinia rohdei ATCC 43380] gi|238709388|gb|EEQ01628.1| Multi-sensor hybrid histidine kinase [Yersinia rohdei ATCC 43380] Length = 927 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 83/252 (32%), Positives = 130/252 (51%), Gaps = 15/252 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL--GNPR 622 K+ L+ +K+ AE+ + KS+ L +SHEIRTPL +G E+++N PL R Sbjct: 378 KERTLALAKSKQAAEQANHRKSEHLTTISHEIRTPLNGALGAIELLQN---TPLTSAQQR 434 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 E A S +L I+N+LLD S+IESG++ L E +L + +A+ + + K Sbjct: 435 LAETARQCSYS---LLAIINNLLDFSRIESGQLALAQERTALLPLLDQAMLTIHSQVSNK 491 Query: 683 RILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 I + T + +P L D + +KQI +N+L NA+ FT G I ++ H ++++ V Sbjct: 492 PISLSTYVSAEVPLELELDSQRLKQILINLLGNAVKFTQQGN-ISLNVEH-KDQQLCFMV 549 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG G+ + PF Q + G+GTGLGL +A + G + S P KG Sbjct: 550 EDTGCGIDLQHQQTIFHPFIQTSD----HGQGTGLGLTIADNLARMMGGNITLHSQPNKG 605 Query: 802 TLIEIIFPLYDT 813 + +I PL T Sbjct: 606 SRFTLILPLCGT 617 >gi|66816437|ref|XP_642228.1| histidine kinase [Dictyostelium discoideum AX4] gi|74856713|sp|Q54YH4|DHKB_DICDI RecName: Full=Hybrid signal transduction histidine kinase B gi|60470115|gb|EAL68095.1| histidine kinase [Dictyostelium discoideum AX4] Length = 1969 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 96/378 (25%), Positives = 184/378 (48%), Gaps = 16/378 (4%) Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + ++ +++E + ++ S+ +++ + +++++G+I N A +F ++D+L P Sbjct: 816 SSVDLKEIERKESRIQSLFRISNEAL-VVHKDGLITDANPAFESMFQIKLQDLLY-PIQS 873 Query: 500 FLEQNTPSVMNHY---LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 + + P++ + +++ +E + S+ + +R + Sbjct: 874 GIWEFLPALEGMFEPGASKLFDNPDMGVIETTGIDSSGRTFQVEVRTNKATYDGEPVDVI 933 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 ++ DI+ KQ + +A + AE + K FL VSHE+RTP+ ++ +++++ Sbjct: 934 SIIDITGRKQLM-EADYALRKAEAANEAKVIFLTTVSHELRTPINGVLASADILERTTLD 992 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 E+ N I SGN +LD++ND+LD SKIE+GKM + S+ + + +I +V Sbjct: 993 STQK----EFLNCIKLSGNYLLDLINDILDYSKIEAGKMEIIKYDFSILKMLDNSIRIVS 1048 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 EK + + N+P I+ D R +KQI LN LSN+I FT + GQIII S++ Sbjct: 1049 KNIYEKGLDLCIFIDPNVPVIVNGDQRRIKQILLNFLSNSIKFT-NHGQIIIRVKLESDD 1107 Query: 736 E----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + V D+G+G+ L + F QI + + +GTGLGL ++K + G Sbjct: 1108 STHSLIKFDVEDSGIGIKTEHLNQLFASFSQIDSGNSRKYQGTGLGLSISKRLCKMMGGD 1167 Query: 792 FYIFSTPAKGTLIEIIFP 809 + S G+ P Sbjct: 1168 VKVKSEFGVGSTFSFTIP 1185 >gi|171914205|ref|ZP_02929675.1| PAS/PAC Sensor Hybrid Histidine Kinase [Verrucomicrobium spinosum DSM 4136] Length = 540 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 124/234 (52%), Gaps = 8/234 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K FLA +SHE+R PL+ +I +I+ + +P E + I R+ L +++DL Sbjct: 173 KDRFLAMLSHELRAPLSPVIHAVTLIEEENEC---SPSVKELLDTIRRNVKLEARLIDDL 229 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+++I SGK+ LH E V + V + + + A + I++RT +++AD + Sbjct: 230 LDVARIRSGKLQLHPENVDVHNLVRRTVQVCEPEAGAREIVVRTDLQATQAQVVADGSRI 289 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQI 763 +QI N+L NAI +T GG++ IST + ++ +RV D+G+G+ +LEK F Q+ Sbjct: 290 QQIVYNLLGNAIKYTGRGGEVRISTENDPTGGLLEIRVEDSGIGIEPGKLEKIFDAFEQV 349 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK-GTLIEIIFPLYDTSHP 816 R G GLGL + + +V+ + G S A+ G+ + PL S P Sbjct: 350 HGD---RSTGLGLGLAICRVLVELHGGSIRAASRGAELGSAFTVSLPLRAASLP 400 >gi|188990705|ref|YP_001902715.1| Two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. campestris str. B100] gi|167732465|emb|CAP50659.1| Two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. campestris] Length = 1292 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 128/241 (53%), Gaps = 8/241 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S K+ FLA + HE+RTP+T ++G SE++ + + + Y I R Sbjct: 910 HKQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTQL----DHKQRSYTESIRR 965 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--RILIRTSF 690 +G+ +L +VND LD+++IESG++ L +P S+ + V+E +L+ A E+ R + Sbjct: 966 AGSHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEALMAPLAQERGLRFSLEVGL 1025 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 +I D ++QI LN+LSNAI FT G + +T S + + V DTG G+ Sbjct: 1026 LGDI-TASGDPTRIRQILLNLLSNAIKFTERGVVGLKLSTLGSYQGLRFEVADTGPGINA 1084 Query: 751 YELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + + F Q ++ R G+GLGL + + + A G + S GT + P Sbjct: 1085 DQKVRLFQRFEQGDGAKTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTRFVVDLP 1144 Query: 810 L 810 L Sbjct: 1145 L 1145 >gi|315179198|gb|ADT86112.1| sensory box sensor histidine kinase/response regulator [Vibrio furnissii NCTC 11218] Length = 1113 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 120/227 (52%), Gaps = 4/227 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +FLA SHE+RTPL +IG +E + + GP+ N + + I SG + +V+DL Sbjct: 443 KDEFLATTSHELRTPLHGMIGIAEALTSGANGPI-NAAHKYQLDIIISSGQRLATLVDDL 501 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703 LD K+ G +++H V+L A + L +K+I I A P + AD + Sbjct: 502 LDYHKMRYGNLDIHRTAVNLSNATRLVLELSNHLLGKKQIRIINQVAEEAPVWVSADAQR 561 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 ++Q+ N++ NAI +T S G+I+IS T ++ + ++V DTG G+ +LE +P Q Sbjct: 562 LEQVLYNLIGNAIKYT-SEGKIVISATRV-DQHIRVQVVDTGQGIPAEQLEHIFEPLIQA 619 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + +G GLGL +++ +++ G Y+ S P GT P+ Sbjct: 620 GHDTSRYRQGAGLGLSISRQLIELMQGSLYVSSQPMVGTTFSFTLPM 666 >gi|260777693|ref|ZP_05886586.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio coralliilyticus ATCC BAA-450] gi|260605706|gb|EEX31991.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio coralliilyticus ATCC BAA-450] Length = 856 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/257 (30%), Positives = 137/257 (53%), Gaps = 11/257 (4%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++ + + + A+K AE+ + ++DFLA++SHE+RTPL I+G S+++K G + Sbjct: 453 QDVTSFVDAEIQSQAARKEAEESARVRADFLAKMSHELRTPLNGILGVSQLLK----GKI 508 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N IE+ + + SG +L ++ND+LD SKIE GK ++ L E +S + Sbjct: 509 SNTDDIEHLDVLCNSGEHLLAVLNDILDFSKIEQGKFHIQSADFRLVELISAVEKIYTPL 568 Query: 679 ANEKRI--LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST---THTS 733 +EK I ++ T+ +NN +D + QI N++SNAI FT G++ +S + Sbjct: 569 CDEKGIGFVVETNVSNN-TFAHSDQVRLNQILFNLVSNAIKFTHE-GEVTVSLFCDGESP 626 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + + VRDTG+G+ + +PF Q + G+GLGL + ++V+ G+ Sbjct: 627 ESRLNISVRDTGIGIERERISHIFEPFVQAEATTTREYGGSGLGLAIVHSLVEMLNGQIE 686 Query: 794 IFSTPAKGTLIEIIFPL 810 I S+ GT + P+ Sbjct: 687 IESSIGYGTKFSLSVPI 703 >gi|229115491|ref|ZP_04244897.1| hypothetical protein bcere0017_17840 [Bacillus cereus Rock1-3] gi|228667904|gb|EEL23340.1| hypothetical protein bcere0017_17840 [Bacillus cereus Rock1-3] Length = 444 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 83/234 (35%), Positives = 119/234 (50%), Gaps = 13/234 (5%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 EK K++F+A +SHEIRTPLT I G+SE +K L + I + ++ Sbjct: 222 EKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVE--HLTEEEIKQGMGIISGETDRLI 279 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI- 697 +V +LLD S+++S NL+ + V L + + E I + A +K+I F N I RI Sbjct: 280 HLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEKKQI----QFINTIERIE 335 Query: 698 -LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 L D +KQI LNI+ NAI ++ G + I T + VI +V+D G+G+ L Sbjct: 336 LLGDRNRLKQIFLNIIQNAIKYSHENGTVYIEATKNEGQAVI-KVKDEGIGIAKEHLPYI 394 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F QI N G GLGL + K MV+ + G I S GT I I PL Sbjct: 395 EQSFYQINN----HAAGAGLGLAIVKKMVELHRGTLSIVSKEGIGTTILIKLPL 444 >gi|226324999|ref|ZP_03800517.1| hypothetical protein COPCOM_02791 [Coprococcus comes ATCC 27758] gi|225206347|gb|EEG88701.1| hypothetical protein COPCOM_02791 [Coprococcus comes ATCC 27758] Length = 809 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 132/253 (52%), Gaps = 13/253 (5%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + L A + AE + K++FL+ +SH+IRTP+ AI+G + + R IE Sbjct: 540 ESRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMNAIVGLTAIAGA---NVESQDRVIE 596 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + I S +L ++N++LD+++IESGKM L E +L E V I+L + +E + Sbjct: 597 CLSKITESSRHLLGLINEVLDMARIESGKMTLAQEDFNLSELVDNLITLTKPVLDEHKHN 656 Query: 686 IRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---- 739 N+I + D ++Q+ LN++SNAI +TP GG I S N L Sbjct: 657 FDIHI-NHIEHEAVCGDSLRIQQVFLNLMSNAIKYTPDGGNITFSIEEKPNGFSELGCYE 715 Query: 740 -RVRDTGVGMTNYELEKAM-KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + D G+GM+ E +K M PF + + + R +GTGLG+ +++ +V+ G + ST Sbjct: 716 FTIEDNGIGMSP-EFQKIMFDPFSRADDQRTTRVQGTGLGMAISRNIVNLMNGTIKVDST 774 Query: 798 PAKGTLIEIIFPL 810 KGT I + L Sbjct: 775 LHKGTKITVTIYL 787 >gi|126348064|emb|CAJ89784.1| putative two-component system sensory histidine kinase [Streptomyces ambofaciens ATCC 23877] Length = 1331 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/260 (30%), Positives = 134/260 (51%), Gaps = 15/260 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I + +QE + +A K +KS+FLA +SHE+RTPL +++ ++++ L Sbjct: 749 IEQARQELEARAQQLSLASK---YKSEFLANMSHELRTPLNSLLILAQLLAQNPSRNL-T 804 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P+ +EYA I +G+ +L ++ND+LD+SK+E+GKM++ E V+L + + + + Sbjct: 805 PKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGKMDVSPERVTLRQLIEYVEATFRPMTT 864 Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH------- 731 +K + S A P +L D ++Q+ N+LSNA+ FT GG ++ + H Sbjct: 865 QKGLQFTVSTAAGAPADLLTDDSRLRQVLRNLLSNAVKFTERGGVELAVEPAHDDEVPPG 924 Query: 732 --TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 V RV+DTG+G+ LE F Q + + GTGLGL + + M Sbjct: 925 VVRGGAVVAFRVKDTGIGIPEQNLESIFGAFQQADGTTSRKYGGTGLGLSITREMAQLLG 984 Query: 790 GKFYIFSTPAKGTLIEIIFP 809 G + STP +G+ + P Sbjct: 985 GAVTVDSTPDRGSTFTLFLP 1004 >gi|20809032|ref|NP_624203.1| sensory transduction histidine kinase [Thermoanaerobacter tengcongensis MB4] gi|20517703|gb|AAM25807.1| Sensory transduction histidine kinases [Thermoanaerobacter tengcongensis MB4] Length = 577 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/256 (30%), Positives = 135/256 (52%), Gaps = 18/256 (7%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y MHDI+E ++KL +K +F+A VSHE+RTPL I + E + Sbjct: 335 YVYVMHDITE----QHKLDQMRK----------EFVANVSHELRTPLATIKSYVETL--- 377 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + + ++ I+ + + +V DLL +SK++S + +L EP +E V ++ Sbjct: 378 LYNDVDTEYSKKFLRIIETETDRMTRLVKDLLLLSKMDSEENSLKLEPCDFNEIVKNVVN 437 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + + A +K + + + + ++ D V+Q+A+NI++NAI +TP GG I IST + Sbjct: 438 SLSIEATKKGHNVILNLSETLQKVNVDKDKVEQMAMNIINNAIKYTPEGGVIEISTAY-D 496 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E V V+D G+G+ +L + + F ++ ++ GTGLGL + K +V+ + GK Sbjct: 497 EEGVTFTVKDNGIGIPKEDLPRIFERFYRVDKARSRELGGTGLGLSIVKQIVELHKGKVK 556 Query: 794 IFSTPAKGTLIEIIFP 809 I S KGT++ + P Sbjct: 557 IESELGKGTVVTVQLP 572 >gi|240142880|ref|YP_002967393.1| putative Sensory/regulatory protein rpfC [Methylobacterium extorquens AM1] gi|240012827|gb|ACS44052.1| putative Sensory/regulatory protein rpfC [Methylobacterium extorquens AM1] Length = 679 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/249 (30%), Positives = 125/249 (50%), Gaps = 6/249 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 KL AK AE S KS F+A VSHE+RTPL AIIG S+++ R + E Sbjct: 170 KLQKAKADAEAASLAKSRFMASVSHELRTPLNAIIGMSDLLGETRL----DADQTEMNRT 225 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + +G +L +N +LD S++E G+M P +L +AV++A S+V A K + +T Sbjct: 226 VSTAGRALLAHINTILDFSRLEVGRMPAEKAPFALRDAVADAASMVVAQARSKGLAFQTE 285 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 +++P+ + R ++++ +N+ +NA+ FT G + + + V VRDTG+G+ Sbjct: 286 VDDDLPQGVCGGRRHLEEVLVNLAANAVKFTAD-GTVSVHVRRADGDMVRFEVRDTGIGI 344 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + F Q + GTGLGL + + +V + G+ + S G+ Sbjct: 345 APEARGRIFEAFSQADETILDSFGGTGLGLAICRQLVTLHGGEIGVDSEIGVGSTFWFEL 404 Query: 809 PLYDTSHPH 817 PL + P Sbjct: 405 PLPEAPLPQ 413 >gi|238753717|ref|ZP_04615078.1| Sensor kinase protein rcsC [Yersinia ruckeri ATCC 29473] gi|238707953|gb|EEQ00310.1| Sensor kinase protein rcsC [Yersinia ruckeri ATCC 29473] Length = 925 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 81/258 (31%), Positives = 135/258 (52%), Gaps = 7/258 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 424 DVSSRVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKG 482 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + + S E ++ + Sbjct: 483 VDRLVTAMN---NSSDLLLKIISDILDFSKIESEQLKIEPQAFSCVEVITHIAANYLPLV 539 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +KR+ + N+P + D ++Q+ N+L+N+I FT +G ++ H E Sbjct: 540 VKKRLGLYCFIEPNVPIEMNGDPVRLQQVISNLLNNSIKFTDTGCIVVQVRLHGPYLE-- 597 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 RV+DTGVG+ + E+ + PF Q+ Q +GTGLGL + + +++ G + S P Sbjct: 598 FRVQDTGVGINHKEITQLFDPFFQVGTGVQRHFQGTGLGLAICEKLINMMDGDVEVNSEP 657 Query: 799 AKGTLIEIIFPLYDTSHP 816 G++ PLY+ + P Sbjct: 658 GIGSIFSFRIPLYNATLP 675 >gi|117923716|ref|YP_864333.1| response regulator receiver sensor signal transduction histidine kinase [Magnetococcus sp. MC-1] gi|117607472|gb|ABK42927.1| response regulator receiver sensor signal transduction histidine kinase [Magnetococcus sp. MC-1] Length = 415 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 122/230 (53%), Gaps = 8/230 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS----EVIKN 612 TM D+ +Q + L ++IAE+ S KSDF+A + HE+R+P +I+GF+ + + Sbjct: 159 TMRDLERSQQREQVL---RQIAEQASQAKSDFVASLGHELRSPTQSIMGFNRYVMDAVSQ 215 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 P ++ Y S + ++N+LLD+SK+ESG+M EP ++ +AV Sbjct: 216 SNIEPDVKAEIAKFIRYAQISSERLAGLINNLLDLSKLESGRMEFAIEPHNIWDAVRFLQ 275 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 ++ EK + + +L D+ + Q+ +N+LSNAI FTP+GG I I+ Sbjct: 276 MEMEPLLQEKGVTLEHPQCTEPLELLFDMGKIIQVLVNLLSNAIKFTPAGGVIRITAHAL 335 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 V + V D+G G+ E+E + Q ++QQ G GTGLGL +A+ Sbjct: 336 DTGRVKIAVSDSGRGIPEEEIEHIFGRYQQSTSNQQSDG-GTGLGLAIAR 384 >gi|262381160|ref|ZP_06074298.1| two-component hybrid sensor kinase/response regulator [Bacteroides sp. 2_1_33B] gi|262296337|gb|EEY84267.1| two-component hybrid sensor kinase/response regulator [Bacteroides sp. 2_1_33B] Length = 795 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 84/280 (30%), Positives = 146/280 (52%), Gaps = 18/280 (6%) Query: 546 KKLPFS------SCYSLTMHDISEWKQEKNK---LSHAKKIAEKESSHKSDFLARVSHEI 596 KKL FS + LT DI E ++E+ + L A ++A+ + KSDFL+R+SH+I Sbjct: 237 KKLRFSFFDKERNILLLTRTDIMEVREEERQRQLLQDALQVAKSANQAKSDFLSRMSHDI 296 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTP+ AIIG + + R ++ I S L+L+++N++LD+SK+ESG + Sbjct: 297 RTPMNAIIGMTTI---ASMHIDDRERIVDCLKKIMVSSKLLLNLINEVLDMSKVESGHIL 353 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNA 715 L E + E + I++VQ ++K R F +++ D++ ++Q+ LN+LSNA Sbjct: 354 LTDEEFDMGELLQSVITMVQTSVSQKFQDFRVHLFQVKHEKLIGDVQRIQQVLLNLLSNA 413 Query: 716 IHFTPSGGQIIISTTH----TSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 I +TP G+I + N + + V D G+G+ L K +PF + ++ Sbjct: 414 IKYTPDYGKITLEIREKPIKNGNYGLFEVTVIDNGIGIKPDFLHKVFEPFERAEDATLRN 473 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +GTGLG+ +++ + G+ + S KG++ L Sbjct: 474 IQGTGLGMAISRNIAHMMNGEIQVESEYGKGSVFTFTMQL 513 >gi|298530516|ref|ZP_07017918.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509890|gb|EFI33794.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 546 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/253 (30%), Positives = 141/253 (55%), Gaps = 13/253 (5%) Query: 574 AKKIA--EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 A++I EK +S K+ FL +H++R PL +I ++E+++ L A +D Sbjct: 161 ARQIVRLEKLNSQKNFFLGMAAHDLRNPLGSIKLYAELLQEDMKHQLSETG----AGMLD 216 Query: 632 RSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + +L +L +V DLLD++KI+SG++NL E V V +A+ +++ A EK I + Sbjct: 217 KIQSLSRFMLGMVEDLLDVTKIDSGQINLQLENVRPGRVVQDALDPLRMLAREKDISLNC 276 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 ++P++ D+ Q+ N+L+NAI ++PSG + + +T + ++L V D G G+ Sbjct: 277 HVLEDLPQVNLDVAKFTQMVTNLLTNAIKYSPSGSTVDVR-LYTRDGYLVLDVSDYGQGI 335 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGT-GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 E+++ + Q +S+ +GEG+ GLGL +A+ +V+A+ G + S+ GT I Sbjct: 336 PGEEMDRLFAEY-QTTSSRPTQGEGSVGLGLAIARRLVEAHDGTIEVQSSQGAGTTFTIT 394 Query: 808 FPLYDTSHPHDCI 820 P++ S HD + Sbjct: 395 LPMHLKS-GHDAL 406 >gi|150018743|ref|YP_001310997.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149905208|gb|ABR36041.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 920 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/240 (32%), Positives = 135/240 (56%), Gaps = 20/240 (8%) Query: 579 EKESSHKSDFLARVSHEIRTPL----TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 E+ K +FL+ +SHE RTPL TAI + V NQ + Y I ++ Sbjct: 657 EQAMEMKDEFLSFISHEFRTPLNVINTAIQTLNLVYSNQM-----TEKIKAYMGTIKQNT 711 Query: 635 NLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 N L +VN++LDI+++ +G++ ++ + V L +A++E+ V +A++K + R +F Sbjct: 712 NRQLRLVNNILDITRVNAGRITINKKNIDIVFLTKAITES---VYEFASKKGV--RLTFV 766 Query: 692 NNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 + + + I D ++I LN+LSNAI FTP+G II++ H++ + + V+D G+G+ Sbjct: 767 SKLTKKIIGVDDEKYERIILNLLSNAIKFTPAGKSIIVNL-HSAKTNICIEVKDNGIGIP 825 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +++ + FGQ+ +S + EGTG+GL L K V+A G + S KGT +I+ P Sbjct: 826 RNKIDVIFERFGQVESSLSRQAEGTGIGLSLVKRFVEALGGSVSVKSNLGKGTTFKILLP 885 >gi|291570781|dbj|BAI93053.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 1235 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 130/249 (52%), Gaps = 12/249 (4%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++L A++ A + S KS FLA +SHEIRTP+ ++G + ++ + + ++ Sbjct: 559 DELVKAREAALENSRLKSQFLANMSHEIRTPMNGVLGMTGLLLKTEL----DTKQKDFVQ 614 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I S N +L I+ND+LD SK+E+ ++ L L+E + I L+ A K I + Sbjct: 615 AIRTSANHLLAIINDILDFSKLEAQEIELEDLDFDLEECLENIIDLLAAQAENKGIELAA 674 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV----ILR--V 741 N+PR L D ++Q+ LN++SN I FTP+ G++ + + N ++ ILR V Sbjct: 675 IVDRNVPRYLRGDPGRLRQVLLNLMSNGIKFTPA-GEVTLRVSRPPNYDINAPLILRYEV 733 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +DTG+G+ + + F Q+ S + GTGLGL + K +VD G+ + S +G Sbjct: 734 QDTGIGIPPESHGRLFEAFSQVDASTTRKFGGTGLGLVICKQLVDVMGGEIGLESVVGQG 793 Query: 802 TLIEIIFPL 810 + P Sbjct: 794 SNFWFTLPF 802 >gi|253699829|ref|YP_003021018.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21] gi|251774679|gb|ACT17260.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21] Length = 962 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/246 (34%), Positives = 132/246 (53%), Gaps = 11/246 (4%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E K + KL AK+ AE S KS FLA +SHE+RTP+T ++G + + Q L Sbjct: 549 ERKTTEEKLQQAKQAAEAASRTKSQFLANMSHELRTPMTGVLGMLD-LALQSTSELQQSD 607 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 YI A RSG +L I+ND+LD+SK+E+GK +L +P SL V+EA + A K Sbjct: 608 YIRTAY---RSGRSLLQILNDILDLSKVEAGKFSLDQKPFSLRSCVTEAADIAAPEAKRK 664 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVI 738 I + A ++P ++ D ++Q+ N++ NA+ FT G Q+ ++ T+ E++ Sbjct: 665 GIELELDLAQDLPWHVVGDQVRLRQVLTNLVGNAVKFTERGRVTVQVEVA-DKTAEAELL 723 Query: 739 LRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 LR R DTG+G+ + + F Q+ +S GTGLGL ++K +V G+ S Sbjct: 724 LRFRVSDTGIGIPQDKRHLLFQAFSQVDDSNTRNYGGTGLGLAISKEIVQRMGGEIGFES 783 Query: 797 TPAKGT 802 G+ Sbjct: 784 GEGVGS 789 >gi|162456999|ref|YP_001619366.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161167581|emb|CAN98886.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 947 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 86/293 (29%), Positives = 145/293 (49%), Gaps = 16/293 (5%) Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ---EKNKL----SHAKKIAE 579 +I L E + R I + L+ HDI+E K+ E+ +L A++ AE Sbjct: 503 RIELSCAHEGAPRTFRAI--AVALGDGVGLSFHDITEQKRADAERAQLLDQEQRARQHAE 560 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 + + K +FLA VSHE+RTPL +I+G++ ++ R G + I+R+ Sbjct: 561 QLNRLKDEFLATVSHELRTPLQSILGWARIL---RTGEVDAESLERGLATIERNAKAQSQ 617 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699 ++ D+LD S I +GK+ L +PV + + ++ A+ LV+ A K + + TS A+++ L Sbjct: 618 LIEDVLDASTILAGKLQLRTDPVDVRQVLATALDLVRPAALAKGVAVDTSVADDVGIFLG 677 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 D ++Q+ N+L+NA+ FTPSGGQ+ ++ + EV V D G G+ L + Sbjct: 678 DAERLQQVVWNLLANAVKFTPSGGQVRALARRVEATLEV--EVEDNGEGIPKSFLPFLFE 735 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPL 810 F Q G GLGL + + + +A G + S KG + P+ Sbjct: 736 RFRQADGGMTRAHGGLGLGLAIVRHLAEAQGGSVHAESDGEGKGARFRVRLPI 788 >gi|294506378|ref|YP_003570436.1| histidine kinase-response regulator hybrid protein [Salinibacter ruber M8] gi|294342706|emb|CBH23484.1| histidine kinase-response regulator hybrid protein [Salinibacter ruber M8] Length = 1346 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 125/225 (55%), Gaps = 11/225 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTP+ +IGF++++ + P ++ + I SG +L I++D+ Sbjct: 819 KSKFLANMSHEIRTPMNGVIGFADLLSDTDL----TPEQQQFVDAIQSSGTTLLSIIDDI 874 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRS 703 L+ SK+E+G+ L P+ + + EA+ + EK I + +P ++ D Sbjct: 875 LNFSKLEAGETELEEAPIRVQTCIEEALDPLAAKVAEKGIELTYLIDPAVPSVIRGDRTR 934 Query: 704 VKQIALNILSNAIHFTPSGG---QIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAM 757 + QI LN+LSNA+ FT G ++ ++++ + + E+ VRDTG+G+ + ++ Sbjct: 935 LHQILLNLLSNAVKFTEEGEVALRVRVASSPATPDGMYELHFSVRDTGIGIPKEKRDRLF 994 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + F Q+ S+ GTGLGL +++ + +A G+ ++ S +G+ Sbjct: 995 ESFSQVDASKSREHGGTGLGLSISQQLTEAMGGEMWVESAVGEGS 1039 >gi|237654499|ref|YP_002890813.1| Hpt sensor hybrid histidine kinase [Thauera sp. MZ1T] gi|237625746|gb|ACR02436.1| Hpt sensor hybrid histidine kinase [Thauera sp. MZ1T] Length = 921 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/253 (30%), Positives = 128/253 (50%), Gaps = 10/253 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E +L AK+ AE S KSDFLA +SHEIRTP+ ++G +E++ + N Sbjct: 251 EVATRTEELLRAKEAAEAASQAKSDFLATMSHEIRTPMNGVLGMTELLLDSGL----NHE 306 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +A ++ SG +L I+ND+LD SKIESG + L L + + + +++ A +K Sbjct: 307 QRHFAEAVENSGRHLLGIINDILDFSKIESGHLELEAVEFELGDLLEDTLAMFAQPAEKK 366 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVI 738 R+ + + R + D ++QI N+ +NAI FT G ++ + T + Sbjct: 367 RLELIADLPPEVRRCVRGDPFRLRQIVGNLANNAIKFTERGEVVVRARLLGEGTDGYRLR 426 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V DTG+G+ + +K + F Q+ S + GTGLGL + + +V G+ + S P Sbjct: 427 ISVEDTGIGIPPHAQQKIFEQFSQLDGSTTRQFGGTGLGLAICRRLVGLMGGEIGVDSRP 486 Query: 799 AKGTL--IEIIFP 809 G I++ P Sbjct: 487 GAGACFHIDLCLP 499 >gi|17229920|ref|NP_486468.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17131520|dbj|BAB74127.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1627 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 95/376 (25%), Positives = 174/376 (46%), Gaps = 27/376 (7%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 + I ++L IL+ D I IN I N+ K+FGY E+I+ + + Q Sbjct: 993 LRISQVRLARILDIADDAIISINGNQQITLFNQGAEKIFGYSAEEIIGQRLDTLIPQRFT 1052 Query: 507 SVMNHYLTEIL---SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDI 561 ++ + SL R + G ++ I K Y++ + D+ Sbjct: 1053 QTHRQHVADFGQAPSLARRMGERREIFGCRQDGTEFPAEASISKFQLDKEVFYTVILRDV 1112 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG-- 619 +E KQ + K +F++ VSHE+RTPLT+I G ++ + Sbjct: 1113 TERKQIER--------------MKDEFVSVVSHELRTPLTSIHGSLGMLASGLLSADSEQ 1158 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R +E A D + LV ++ND+LDI +IESG++ + E L + + A+S++Q A Sbjct: 1159 GKRLLEIAT--DSTERLV-RLINDILDIERIESGRVKMERESCDLSDLIESAVSIMQPLA 1215 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 N+ + + S ++ ++ D + Q N+LSNAI F+ + + + H +E ++L Sbjct: 1216 NKAGV--KLSVSSPSIQLWVDPDRIVQTLTNLLSNAIKFSTAEKTVWLVAQHYGDE-LLL 1272 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V+D G G+ +L+ + F Q+ +S +GTGLGL + ++++ + G+ + S Sbjct: 1273 TVKDNGRGIPADKLDSIFERFQQVDSSDSRNHDGTGLGLAICQSIIQQHGGRIWAESVLG 1332 Query: 800 KGTLIEIIFPLYDTSH 815 +G+ P+ S Sbjct: 1333 EGSNFYFTLPILPISQ 1348 >gi|189424607|ref|YP_001951784.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189420866|gb|ACD95264.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 929 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 131/245 (53%), Gaps = 9/245 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + Q ++ AK+ AE S KS+FLA +SHEIRTP+ I+G +E++ + NP+ Sbjct: 260 QLMQSGEEMRIAKEQAEASSRAKSEFLANMSHEIRTPMNGILGMTELLMDTEL----NPQ 315 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +Y + S ++DI+ND+LD SKIE G++ P L + + + + + A +K Sbjct: 316 QFDYLRSVKVSAENLMDIINDILDFSKIEVGRLETEAIPFMLRSMLGQTLRTLSVRAAQK 375 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH-TSNEEVIL 739 + + ++P ++ D ++Q+ LN+ NA+ FT G ++++S +E++L Sbjct: 376 GLELVFQVDPDLPDTLIGDPGRLRQVLLNLAGNAVKFTDQGEVELLVSKQQELPGKELLL 435 Query: 740 R--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 R VRD G+G++ ++ PF Q S + GTGLGL ++ +V G+ + S Sbjct: 436 RFEVRDRGIGISPEHQQRIFAPFEQADLSTTKKYGGTGLGLAISSRLVQLMGGEIGLESV 495 Query: 798 PAKGT 802 +G+ Sbjct: 496 AGQGS 500 >gi|254519132|ref|ZP_05131188.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium sp. 7_2_43FAA] gi|226912881|gb|EEH98082.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium sp. 7_2_43FAA] Length = 691 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 133/249 (53%), Gaps = 9/249 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI---IGFSEVIKNQRF 615 +D S+++ + +L ++ ++ KS+F A +SHE +TP+ I + + KN+ Sbjct: 404 YDNSKYRDKYAELYKNLEVLQESEKTKSEFFASISHEFKTPINVIYSSVQLLNLYKNKDD 463 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 Y++Y N I ++ ++++++D S+I G +F +++ E V + + + Sbjct: 464 REFM-GYYLKYKNNIKQNCLRSFKLIDNIIDASRINKGNYEANFNNINIVELVEKITNSI 522 Query: 676 QLYANEKRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 Y K I++ F NI ++ D+ V++I LN+LSNAI FTP G+II+S Sbjct: 523 TPYVEIKNIMV--IFDTNIEELIIKCDVYMVERIILNLLSNAIKFTPKNGKIIVSVNDKE 580 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 NE V +RVRDTG+G+ +K F Q+ S EG+G+GL L K++VD GK Y Sbjct: 581 NE-VEIRVRDTGIGIPKEMKDKIFNKFTQVDKSLNRSKEGSGIGLSLVKSLVDLLNGKIY 639 Query: 794 IFSTPAKGT 802 + + G+ Sbjct: 640 LNTEYENGS 648 >gi|148977089|ref|ZP_01813729.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3] gi|145963558|gb|EDK28820.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3] Length = 602 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 126/249 (50%), Gaps = 6/249 (2%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E +++ +LS AK+ A+ + K DFL+ VSHE+RTPL I+G ++++ G + Sbjct: 212 EMRKQYVQLSLAKESAQSANRAKDDFLSVVSHEMRTPLNGILGMAQIL-----GEGVDEA 266 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 E + I SG +L I+ND+LDI+K+E GK+ L EP SL+ V E + +K Sbjct: 267 KKEQISIIVSSGEHLLLIINDILDIAKMEQGKLELRIEPFSLEALVQEVKNAFDNTCKQK 326 Query: 683 RI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + + T+ + D +KQ+ N+L NA+ FT G S + + + Sbjct: 327 SLDYVVTTEHIEGTYLAGDNTRLKQVIFNLLGNAVKFTKKGAVTCHFQWLESESRLTITI 386 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ +LE KPF Q +S GTGLGL + +++ GK + S G Sbjct: 387 TDTGIGIPTDKLETIFKPFSQADSSTTRHFGGTGLGLAIVTQLLELMSGKIELVSEVNVG 446 Query: 802 TLIEIIFPL 810 + + P+ Sbjct: 447 SQCTVTLPM 455 >gi|74312741|ref|YP_311160.1| sensory histidine kinase AtoS [Shigella sonnei Ss046] gi|73856218|gb|AAZ88925.1| sensor protein AtoS for response regulator AtoC [Shigella sonnei Ss046] Length = 608 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 188/398 (47%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 229 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 288 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 289 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 341 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 342 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 396 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q P+ + EY + + + + + ++ LL+ S+ Sbjct: 397 AHEVRNPLTAIRGYVQILRQQTSDPI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 452 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 453 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL 508 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 509 INAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFF------TTKAS 562 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 563 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 600 >gi|288869902|ref|ZP_06112218.2| putative response regulator receiver domain protein [Clostridium hathewayi DSM 13479] gi|288869200|gb|EFD01499.1| putative response regulator receiver domain protein [Clostridium hathewayi DSM 13479] Length = 950 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/261 (29%), Positives = 147/261 (56%), Gaps = 17/261 (6%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D +E +++K L A + A +S K++FL+ +SH+IRTP+ AI+G + + + L Sbjct: 414 DRAEQERQKKALEEAYQAARVANSAKTNFLSSMSHDIRTPMNAIMGMAAIAQ----ANLS 469 Query: 620 NPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 +P I + + I+ S +L +VN++LD+S+IESGK++L E V L E + ++ + Sbjct: 470 SPEKIRDCLSKINVSSRHLLSLVNEVLDMSRIESGKIDLTPEEVKLPELIENVFAMCKPL 529 Query: 679 ANEKRILIRTSFANNI--PRILADLRSVKQIALNILSNAIHFTPSGGQIIIS-------T 729 +EK + + S A+ + ++ D ++Q+ +N+L+NA+ +TP+GG+I +S + Sbjct: 530 ISEKDLQFQIS-ASKVRHETVITDGDRLQQVLINLLTNAVKYTPNGGRISLSIKEIPSLS 588 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + + E I + DTG+GM+ L +PF + +S+ + +GTGLG+ + + +V Sbjct: 589 SQKAQFEFI--ITDTGIGMSEEFLPHIFEPFSRAEDSRISKIQGTGLGMAITENIVRMMN 646 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G + S +G+ + L Sbjct: 647 GSIEVTSRLGEGSQFTVTVQL 667 >gi|262382720|ref|ZP_06075857.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262295598|gb|EEY83529.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 767 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 128/250 (51%), Gaps = 12/250 (4%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 ++W++ +L K+ AE KS FLA +SHEIRTPL AI+GFSE++ +P Sbjct: 527 TKWEKMIQQLKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVT-----CDDP 581 Query: 622 R-YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 EY N I + L+L ++ND+LD+SKIESG + E +L + +E +Q Sbjct: 582 EEKKEYINIIQSNNELLLRLINDILDLSKIESGIIERRKENFNLAKVCNELFVTIQAKMT 641 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + +R N+ +L D +KQ+ +N L+NA+ T SG I E + + Sbjct: 642 NPNVELRLDGPNSECWVLLDRNRLKQVWMNFLTNAVKCTKSG--YIKMGYGIEREGLRIY 699 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+G+ + +K F ++ Q GTGLGL +++A+V+A G+ S Sbjct: 700 VEDTGIGIPDDLHDKVFTRFEKLNEFSQ----GTGLGLTISRAIVEAAGGEVGFTSKLGV 755 Query: 801 GTLIEIIFPL 810 G+ PL Sbjct: 756 GSTFWAWLPL 765 >gi|86143811|ref|ZP_01062187.1| two-component system sensor histidine kinase [Leeuwenhoekiella blandensis MED217] gi|85829854|gb|EAQ48316.1| two-component system sensor histidine kinase [Leeuwenhoekiella blandensis MED217] Length = 804 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 90/377 (23%), Positives = 181/377 (48%), Gaps = 42/377 (11%) Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 ++I +RK E+E + IINRE +L+ +R+++ + + R+ Sbjct: 204 SKIEERKKELE--------------LDIINRENTLLANDRSINLKIRNLLSTLEREG--T 247 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559 F + +++N + EI +TL+ I + S L++ +I + Sbjct: 248 FTARQREALLNSRIQEI-----SKTLKIIGILSVS----LAIGFVI----------MIFK 288 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D S +Q +L + A+ + +A ++H++R+PL ++GF++++K Sbjct: 289 DASRSQQYSRELEESNATAQSLLKSREQLMATITHDMRSPLNTVLGFTDLLKKTAV---- 344 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + + Y + + +SG+ +L +VNDLLD +K+E+GK+++ P + + + + I + Sbjct: 345 DAKQMRYLDTVQKSGDYILKLVNDLLDFAKLEAGKISVEKVPFNPKKLIEDVIVVSLPQP 404 Query: 680 NEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + + + T + + I L+D +KQI N+++NA FT G I H + + Sbjct: 405 LKTGVEVHTEIPDELDTIFLSDPFRIKQILANLITNAYKFTEEGS--ITVALHKDGKNLR 462 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 ++ DTG G+ + + K F Q + Q + G GLGL +++ + + GK + S P Sbjct: 463 FKIIDTGCGIPKEKQQLIFKEFSQAEETTQRKYGGFGLGLSISQKLTELLEGKLQLKSIP 522 Query: 799 AKGTLIEIIFPLYDTSH 815 KG+ +I P+ T H Sbjct: 523 GKGSTFTLIVPVEQTEH 539 >gi|37519668|ref|NP_923045.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35210659|dbj|BAC88040.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 785 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 123/228 (53%), Gaps = 5/228 (2%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK AE+ + K +FLA +SHE+R+PLTAI+G++++++ G + +E I+R+ Sbjct: 397 AKVDAEEANRLKDEFLATLSHELRSPLTAILGWTKLLRQVDLGAVRAAHALEV---IERN 453 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 ++ DLLDIS+I +GK+ + V L + AI V+ A + I + T Sbjct: 454 ALAQNQLIEDLLDISRIVAGKLRIEAAAVDLAGVIEAAIGTVRPAAQARAIEVDTEIEPG 513 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 +P ++ D ++Q+ N+L+NA+ FTP+GG++ + + + V D+G+G+ + L Sbjct: 514 VPLLMGDATRLQQVVWNLLANAVKFTPNGGRVRVRLSRRGTAAEVA-VSDSGLGIAPHLL 572 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 + F Q +S G GLGL + + +V+ + G S P +G Sbjct: 573 PHVFERFRQADSSSTRSHGGLGLGLAIVRQLVELHSGTVSAAS-PGEG 619 >gi|88857797|ref|ZP_01132440.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2] gi|88820994|gb|EAR30806.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2] Length = 1235 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 129/241 (53%), Gaps = 8/241 (3%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + ++L A+K AE S KS+FLA +SHE+RTP+ AIIG S+++ + N R + Sbjct: 463 ERTSELVEARKKAESASKAKSNFLAHMSHEVRTPMNAIIGLSQLMLKTQL----NKRQRD 518 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + + S +++L+ +ND+LD SKIE+ K+ L + P + + + ++ A K + Sbjct: 519 FMEKVLSSSDVLLNTLNDVLDYSKIEANKLTLDYTPFDIRDVLRRVTNISAYKAQYKGVE 578 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--V 741 + +P + + D + QI +N+ SNA+ FT G II + N++ LR V Sbjct: 579 LLLDIDQKVPFQWIGDPIRLGQILINLASNAVKFTEQGEVIIRVKLLEQHNQQSTLRFSV 638 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ + PF Q+ +S + GTGLGL +++ + + G+ ++ S G Sbjct: 639 IDTGIGIEQERINLLFTPFMQMDSSITRKYGGTGLGLAISRQLTELMGGRIWVESQLNVG 698 Query: 802 T 802 + Sbjct: 699 S 699 >gi|239905516|ref|YP_002952255.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239795380|dbj|BAH74369.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1265 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 128/247 (51%), Gaps = 9/247 (3%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 + L +K+ AE + KS+FLA +SHEIRTPL ++G ++++ PLG EY + Sbjct: 874 DDLMKSKEAAENANRAKSEFLANMSHEIRTPLNGVLGMLQLLET---APLGAEEK-EYVD 929 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + + ++++D+LD+S+IE+GK+N+ + SL + L+ A +K + +R Sbjct: 930 EAITASKRLTNLLSDILDLSRIEAGKLNIRIDEFSLADMFDSVDGLLAATARKKDLELRF 989 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG----QIIISTTHTSNEEVILRVRD 743 +P +L D ++QI N++ NAI F+ G ++ + E ++ V D Sbjct: 990 FLDEQLPSFVLGDEVRLRQILFNLVGNAIKFSDQGTISVQAYLLPFAKIAQERILFMVSD 1049 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 G+G+++ L +PF Q + R +G GLGL + K +V G+ I S P GT Sbjct: 1050 EGIGISDELLGLIFEPFSQGEGNYTRRFQGAGLGLSIVKRLVGLLEGEIAIESAPGLGTT 1109 Query: 804 IEIIFPL 810 + + P Sbjct: 1110 VYLSLPF 1116 >gi|220907212|ref|YP_002482523.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219863823|gb|ACL44162.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1330 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 125/227 (55%), Gaps = 5/227 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +FLA +SHE+RTPL I+G+S+++++ + + + + I+R+ + +++DL Sbjct: 962 KDEFLAVLSHELRTPLNPILGWSKLLQSPQ---ISAQKLQQGLATIERNAKQQVQLIDDL 1018 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD S+I G+++L+ ++L E + A+ V+L A K I + + + +I D+ + Sbjct: 1019 LDTSRIIRGQLSLNLAVINLSEPILAALETVRLSAETKEIKLEVKLGSWLGQIRGDVGRL 1078 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +Q+ N+LSNAI FTP GG+I + + I +VRDTG G+ L + F Q Sbjct: 1079 QQVVWNLLSNAIKFTPPGGRITVRLSQVDRWAQI-QVRDTGKGIQPQFLPHVFELFRQED 1137 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPL 810 +S G GLGL +A+ +V+A+ G S +G ++ PL Sbjct: 1138 SSTTRSFGGLGLGLAIARQVVEAHGGTIMAASQGEGQGATFTVLLPL 1184 >gi|83816760|ref|YP_444628.1| histidine kinase DhkJ [Salinibacter ruber DSM 13855] gi|83758154|gb|ABC46267.1| histidine kinase DhkJ [Salinibacter ruber DSM 13855] Length = 1346 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 125/225 (55%), Gaps = 11/225 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTP+ +IGF++++ + P ++ + I SG +L I++D+ Sbjct: 819 KSKFLANMSHEIRTPMNGVIGFADLLSDTDL----TPEQQQFVDAIQSSGTTLLSIIDDI 874 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRS 703 L+ SK+E+G+ L P+ + + EA+ + EK I + +P ++ D Sbjct: 875 LNFSKLEAGETELEEAPIRVQTCIEEALDPLAAKVAEKGIELTYLIDPAVPSVIRGDRTR 934 Query: 704 VKQIALNILSNAIHFTPSGG---QIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAM 757 + QI LN+LSNA+ FT G ++ ++++ + + E+ VRDTG+G+ + ++ Sbjct: 935 LHQILLNLLSNAVKFTEEGEVALRVRVASSPATPDGTYELHFSVRDTGIGIPKEKRDRLF 994 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + F Q+ S+ GTGLGL +++ + +A G+ ++ S +G+ Sbjct: 995 ESFSQVDASKSREHGGTGLGLSISQQLTEAMGGEMWVESAVGEGS 1039 >gi|331642849|ref|ZP_08343984.1| signal transduction histidine-protein kinase AtoS [Escherichia coli H736] gi|331039647|gb|EGI11867.1| signal transduction histidine-protein kinase AtoS [Escherichia coli H736] Length = 612 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 188/398 (47%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 233 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 292 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 293 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 345 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 346 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 400 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q P+ + EY + + + + + ++ LL+ S+ Sbjct: 401 AHEVRNPLTAIRGYVQILRQQTSDPI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 456 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 457 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL 512 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 513 INAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFF------TTKAS 566 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 567 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 604 >gi|327540026|gb|EGF26622.1| sensor signal transduction multi-kinase [Rhodopirellula baltica WH47] Length = 1976 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 131/247 (53%), Gaps = 6/247 (2%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 K KL AK AE+ + KS+FLAR+SHEIRTP+T I+GF+E++ R + + Sbjct: 1393 KEKLQIAKTAAEEANQAKSEFLARMSHEIRTPITGILGFTELLL--RGVVTDDAERESHL 1450 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I +G +L ++ND+LDISKIE+ K+ + V + I+ ++ A EK I + Sbjct: 1451 QTIHSNGFHLLHLLNDILDISKIEADKIETERVLCNPSWMVQDVIASLRSKAIEKDISLE 1510 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRD 743 + P I +D ++QI N+ SNAI FT GG I + S E ++ + V+D Sbjct: 1511 IQVESEFPEEIYSDPTRLRQILTNLTSNAIKFTNQGGVTISISAIGSGETASKMKIAVQD 1570 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G+GMT + +PF Q S GTGLGL ++K + +A G + S GT Sbjct: 1571 SGIGMTQEQTAFIFEPFKQADVSTTREYGGTGLGLSISKRLAEALDGTLEVESERGVGTQ 1630 Query: 804 IEIIFPL 810 + + F + Sbjct: 1631 MILNFDI 1637 >gi|295675446|ref|YP_003603970.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] gi|295435289|gb|ADG14459.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] Length = 1415 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 89/271 (32%), Positives = 141/271 (52%), Gaps = 10/271 (3%) Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 S +S D S + +L+ A+ AE S K +F A +SHEIRTP+ ++G EV+ Sbjct: 749 SVVWSGYWVDASVERARSEELARARDAAEAASRAKDNFFAMMSHEIRTPMNGVLGLVEVL 808 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + PL + E I S +L I++DLLD SKIE+G++ L EP+ L E V Sbjct: 809 ERT---PLSTDQS-EMLGMIHESAGALLQILDDLLDYSKIEAGRLTLEAEPIDLRELVDN 864 Query: 671 AISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QII 726 A+ L+ A+EK + +R +N L D ++QI N+L NAI FTP G + Sbjct: 865 AVGLLAGRAHEKGLKVRVDIGSNAAATLRGDSVRLRQILFNLLGNAIKFTPKGEVGVSVA 924 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + ++++ + L VRDTG+G+ +PF Q +S R GTGLGL + + ++D Sbjct: 925 VVEDRSASQTLELTVRDTGIGIAPNVQAGLFEPFVQAESSTTRRFGGTGLGLTICRKLID 984 Query: 787 ANMGKFYIFSTPAKGT--LIEIIFPLYDTSH 815 G + S P +GT ++ + P+ + + Sbjct: 985 LMSGTLTLHSEPGRGTSMIVRLTMPIVEQRY 1015 >gi|229102610|ref|ZP_04233314.1| hypothetical protein bcere0019_17680 [Bacillus cereus Rock3-28] gi|228680837|gb|EEL35010.1| hypothetical protein bcere0019_17680 [Bacillus cereus Rock3-28] Length = 444 Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 83/234 (35%), Positives = 119/234 (50%), Gaps = 13/234 (5%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 EK K++F+A +SHEIRTPLT I G+SE +K L + I + ++ Sbjct: 222 EKAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVE--HLTEEEIKQGMGIISGETDRLI 279 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI- 697 +V +LLD S+++S NL+ + V L + + E I + A +K+I F N I RI Sbjct: 280 HLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEKKQI----QFINTIERIE 335 Query: 698 -LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 L D +KQI LNI+ NAI ++ G + I T + VI +V+D G+G+ L Sbjct: 336 LLGDRNRLKQIFLNIIQNAIKYSHENGTVYIEATKNEGQAVI-KVKDEGIGIAKEHLPYI 394 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F QI N G GLGL + K MV+ + G I S GT I I PL Sbjct: 395 EQSFYQINN----HAAGAGLGLAIVKKMVELHRGTLSIVSKEGIGTTILIKLPL 444 >gi|330448533|ref|ZP_08312181.1| his Kinase A domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492724|dbj|GAA06678.1| his Kinase A domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 1305 Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 87/285 (30%), Positives = 147/285 (51%), Gaps = 14/285 (4%) Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL--SHAKKIAEKESSHKSDFLA 590 T + + LR I ++ ++ + DI++ K+++ L ++AK +A ES KS FLA Sbjct: 622 TYHPRWIELRCQISEVENGWQWNTIIIDITQAKEQQVALMEANAKSLAATES--KSRFLA 679 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SHEIRTP++ I+ E+++ P + + + +SG +L+IVND+LD SKI Sbjct: 680 MMSHEIRTPISGILSLLELMEPHA----QKPELRQIHHNLSQSGLNLLNIVNDVLDFSKI 735 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA--DLRSVKQIA 708 E+GK+N++ L + + + ++AN+K + + L+ D R + Q+ Sbjct: 736 EAGKLNINPSRHVLSDLIHALVQPHSIHANQKEVSFTLWLDPAVAHYLSFDDFR-LTQVL 794 Query: 709 LNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPN 765 N+L+NAI FT G + + +N E L + DTG+G+ +L + +PF Q+ Sbjct: 795 NNLLNNAIKFTTMGNIHLAVDVVKETNTEQTLAFTIHDTGIGIKPEDLSQLFQPFVQVEQ 854 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 S R GTGLGL + +V G + S KGT +I P Sbjct: 855 SSNRRFSGTGLGLSICYQLVQLMDGDIHATSEVGKGTSFTVIVPF 899 >gi|300856127|ref|YP_003781111.1| putative Signal transduction histidine kinase [Clostridium ljungdahlii DSM 13528] gi|300436242|gb|ADK16009.1| predicted Signal transduction histidine kinase [Clostridium ljungdahlii DSM 13528] Length = 600 Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 124/232 (53%), Gaps = 6/232 (2%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP-LGNPRYIEYANYIDRSGNLV 637 EK + DF++ VSHE RTPLT I G E I + P I N +R + Sbjct: 365 EKLEQMRKDFISNVSHEFRTPLTVIKGNLESIVDGITQPECIQDTCITLLNETNR----L 420 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 +V DLL++SK+ESGK+ + F + ++ V++ I ++ + K I ++ S NN+P + Sbjct: 421 ERMVKDLLNLSKLESGKLEIDFNELDINMLVNDTIRSIKPLIDAKSIDLQLSLQNNLPPL 480 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 +D +KQ+ + L N I F+ + G++ IS+ + NE + + + D G+G+ E++ Sbjct: 481 FSDYDKLKQLLIIFLDNGIKFSQNKGKLKISSC-SDNENICITIEDNGIGIPEDEIQYLG 539 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F + S+ GTGLGL +AK +V G F I S KGT I I FP Sbjct: 540 EKFFKADKSRTSNAGGTGLGLSIAKRLVKVLNGHFSIESELTKGTRITISFP 591 >gi|126659206|ref|ZP_01730344.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] gi|126619511|gb|EAZ90242.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] Length = 701 Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 121/241 (50%), Gaps = 8/241 (3%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L H +IA + K DFLA +SHE+RTPL IIG+ E++ P + +E I Sbjct: 319 LYHQAQIANRA---KDDFLAMLSHELRTPLNPIIGWCELLNRGNLSPEQTKQAVEI---I 372 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 DR+ L ++ DLLD+S+I GK++L + L + AI VQL A + + I T Sbjct: 373 DRNAKLQSHLIEDLLDVSRILQGKLHLQKCSLDLKTIILSAIETVQLMAKKSSVTIETKL 432 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 ++ I D+ + Q+ N+LSNAI F+PS + +S + +I ++D G G+ Sbjct: 433 DTDVHPISGDITRLHQVVWNLLSNAIKFSPSHSTVTVSLSAVDGMALI-EIKDQGKGIEP 491 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA-KGTLIEIIFP 809 L F Q +S+ G GLGL + + +V+ + GK S +G + FP Sbjct: 492 EFLPYIFDRFSQSESSKNRDYGGLGLGLTIVRNLVEMHDGKIKADSLGINQGATFTVAFP 551 Query: 810 L 810 + Sbjct: 552 I 552 >gi|329910714|ref|ZP_08275357.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium IMCC9480] gi|327546114|gb|EGF31175.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium IMCC9480] Length = 1105 Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/268 (29%), Positives = 140/268 (52%), Gaps = 26/268 (9%) Query: 557 TMHDISEWKQEKNKLS------------------HAKKIAEKESSHKSDFLARVSHEIRT 598 T+ DISE K+ +N+L A+ AE + KSDFLA +SHE+RT Sbjct: 417 TVQDISERKRAQNELDRYRNDLEALVTSRTIELEQARDAAESANRAKSDFLATMSHELRT 476 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PL A+IG + ++ P+ +PR ++A+ I S + +++D+LD S+IE+GK+ L Sbjct: 477 PLHAVIGLTRLLGA---API-SPRQRDHADNILLSAEALQTMIDDILDFSRIEAGKLQLE 532 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIH 717 P SL+ + +++ + +K + ++P +L D ++Q+ LN+ SNA+ Sbjct: 533 HLPFSLNAILRTTATVIGIGLVDKPVEACFDIDPDMPDLVLGDSLRLQQVLLNLASNAVK 592 Query: 718 FTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 FT +G I+ + + + L+ RD+G+G+ +L+ + F Q S R G+ Sbjct: 593 FTDAGSIIVQLLCEPRAGGRIALKFIFRDSGIGIPAAQLDTIFEQFTQADTSTTRRYGGS 652 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GLGL +++ + D G + S P +G+ Sbjct: 653 GLGLAISRRLADLMRGTISVDSQPGQGS 680 >gi|259417699|ref|ZP_05741618.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] gi|259346605|gb|EEW58419.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] Length = 1136 Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 72/253 (28%), Positives = 121/253 (47%), Gaps = 6/253 (2%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN- 620 +E ++ ++ E+ K FLA SHE+RTPL IIG E ++ G +G+ Sbjct: 412 AELQENLRQIGEKNAKLEEADRMKDRFLANTSHELRTPLNGIIGILETLEG---GAMGDM 468 Query: 621 -PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P I S + +V+DLLDI +I G+M L +PV + A+ + L+Q Sbjct: 469 LPAQASQLRLITFSARRLSRLVDDLLDIYRIREGRMRLDLQPVDVAHALRNVLQLLQPTF 528 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 ++P + AD +QI N+LSNA+ + G ++ I+ ++ ++ L Sbjct: 529 QVDPAKFHLDLPEDLPAVTADPVRFEQILFNLLSNAVKYG-GGSEVHITAERRASGQMAL 587 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 +RD G G+ +E+ P Q+ + GTGLGL +A+ + D G + STP Sbjct: 588 AIRDHGPGIAADSMERIFHPLEQLMPEGSGQATGTGLGLTIARHLADLMSGSIEVSSTPG 647 Query: 800 KGTLIEIIFPLYD 812 +G+ ++ P D Sbjct: 648 EGSEFRVLLPQSD 660 >gi|225569632|ref|ZP_03778657.1| hypothetical protein CLOHYLEM_05726 [Clostridium hylemonae DSM 15053] gi|225161102|gb|EEG73721.1| hypothetical protein CLOHYLEM_05726 [Clostridium hylemonae DSM 15053] Length = 870 Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 87/252 (34%), Positives = 128/252 (50%), Gaps = 10/252 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ L K+ AE + KSDFL+++SHEIRTPL I+G E+ K+ P R Sbjct: 332 KRSSELLRTEKERAETANRAKSDFLSQMSHEIRTPLNGIMGMVELGKHHIEEP---DRMR 388 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I S +L ++ND+LD+SKIESGK+ LH E L + ++ + A K+I Sbjct: 389 NCLDKITLSSAHLLSLINDILDMSKIESGKIELHPERFDLGRLLRTLTTVFLVQAKNKQI 448 Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--VILR- 740 + + L D + QI N+LSNA+ FTP+ G + ++ +E + LR Sbjct: 449 DFQIFLYGELEEYLTGDALRLNQILTNLLSNALKFTPAHGYVSLNVEELQRDENGIWLRF 508 Query: 741 -VRDTGVGMTNYELEKAMKPFGQIPNSQQIRG-EGTGLGLPLAKAMVDANMGKFYIFSTP 798 VRDTG G+ LE+ + F Q NS +R GTGLGLP+ K V G + S Sbjct: 509 EVRDTGRGIAPENLERVFEAFTQ-ENSGIVREYGGTGLGLPITKNFVQMMGGSVTVSSEI 567 Query: 799 AKGTLIEIIFPL 810 G++ + P Sbjct: 568 GAGSVFTVDLPF 579 >gi|326804104|ref|YP_004321922.1| alkaline phosphatase synthesis sensor protein PhoR family protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651621|gb|AEA01804.1| alkaline phosphatase synthesis sensor protein PhoR family protein [Aerococcus urinae ACS-120-V-Col10a] Length = 614 Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 135/235 (57%), Gaps = 9/235 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 +SDF+A SHE++TP+TA+ GF+E + + R E+ ++R N + ++ND+ Sbjct: 369 RSDFIANASHELKTPVTALKGFTETLLDGALEDEDTAR--EFVEIMNREANRLGFLINDI 426 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP---RILADL 701 LD++KIE ++ E V L+ ++E + +++ A+E R+ + + N++ R + Sbjct: 427 LDLAKIEQDQLGHRSETVQLNRVIAEVVHSLEIPASENRVEVH--YDNDLEAGIRFTTEE 484 Query: 702 RSVKQIALNILSNAIHFTPS-GGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKP 759 +KQI N+++NAI + + GGQ+ IS+T T +++ V++ +RD G+G+ + ++ + + Sbjct: 485 MRLKQILTNLINNAIKYNKAEGGQVWISSTVTEDDKYVVVAIRDNGLGIPDEDIPRIFER 544 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 F ++ ++ GTGLGL + + +V + GK + S +G+ + P D S Sbjct: 545 FYRVDKTRSTASGGTGLGLSIVRNLVASMSGKIDVVSELNEGSTFTVYLPKNDKS 599 >gi|320166405|gb|EFW43304.1| response regulator receiver [Capsaspora owczarzaki ATCC 30864] Length = 1498 Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 111/410 (27%), Positives = 184/410 (44%), Gaps = 42/410 (10%) Query: 435 PEDVDTRINKRKMEIEVMQ----LCSILEATSDGIAIINREGIILSTNRAVSKLFG---Y 487 P+ +R + ++ I+ MQ L +IL+++ D +A+ N +L ++ +L G + Sbjct: 243 PKSDQSRTHAPRLPIDAMQQHQILEAILQSSGDALAVFNATSDVLCSSTKFQQLVGSASH 302 Query: 488 P---VEDILRKPFT------VF------LEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 P + D + T +F LE + + +T + + L Sbjct: 303 PGALISDSVNAATTDGQEAPIFPSPLDLLEPESHRQVQRAITSMFEAGSDYNTADLDLCK 362 Query: 533 TKEEKLLSLRIIIKKLP----FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH---- 584 K E+ L L + LP SS L M D KN+L A A + S H Sbjct: 363 VKSEEALPLHVRSTLLPPLKAGSSGLMLAMFDD---LAPKNRLESALLEAHR-SKHANES 418 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIR L+ I+G +++ + E+ I S ++L ++ND+ Sbjct: 419 KSRFLANMSHEIRVWLSGILGMIHLLEGTQL----TEEQHEFLGTIKMSAQILLTVINDI 474 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703 LD SKIE+G++ + + + + L+ A K +L++ IP ++L D Sbjct: 475 LDFSKIEAGQLTIERVEFDIFNTIEMVVELLYPSAGNKNLLLQCFIDPRIPTKVLGDPSR 534 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTS---NEEVILRVRDTGVGMTNYELEKAMKPF 760 ++QI +N+LSNAI FT G + T N V+ V DTG+G+T L + + F Sbjct: 535 LQQILVNLLSNAIKFTKKGRVFLKCTLENETLENATVLFEVHDTGIGLTPDTLARLFRRF 594 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 Q S + GTGLGL ++K++V+ G S KG+ P+ Sbjct: 595 SQEDASTTRKFGGTGLGLVISKSLVELMGGSIGADSVSGKGSRFWFRLPV 644 >gi|240146890|ref|ZP_04745491.1| sensory box sensor histidine kinase/response regulator [Roseburia intestinalis L1-82] gi|257200964|gb|EEU99248.1| sensory box sensor histidine kinase/response regulator [Roseburia intestinalis L1-82] gi|291534543|emb|CBL07655.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Response regulator receiver domain [Roseburia intestinalis M50/1] Length = 421 Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/261 (30%), Positives = 133/261 (50%), Gaps = 10/261 (3%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 ++ L + D ++ + + AK E+ + K++FL+R+SHEI+TP+ I+G + + Sbjct: 11 IAALVGLFLFDTVRLRRMQVQRDAAK---EEVAEVKTEFLSRISHEIKTPMNVIVGATAL 67 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + P R E N I + ++ ++NDL+D+SKIE+GK +LH +P S E ++ Sbjct: 68 GLEETEHP---ERMEECLNRIRGASEFLMGLLNDLVDMSKIENGKFHLHPKPYSFTEFLN 124 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS- 728 E ++++ K I ++ D QI N+LSNA+ FTP GG++ Sbjct: 125 EVENMMEPMCERKWIRFHMPHEEININMMVDPVRFFQIFFNLLSNAVKFTPEGGEVTFRI 184 Query: 729 ---TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 TH + V D G+GM+ + +PF Q +Q G G GLGL + +++V Sbjct: 185 CNYATHNNQFCADYVVSDNGMGMSEEFQQILFQPFTQESVNQGEPGNGAGLGLAIVRSIV 244 Query: 786 DANMGKFYIFSTPAKGTLIEI 806 D G + S P KGT I++ Sbjct: 245 DLMGGTITVKSEPQKGTEIKV 265 >gi|42522190|ref|NP_967570.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39574721|emb|CAE78563.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 909 Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/273 (29%), Positives = 136/273 (49%), Gaps = 12/273 (4%) Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 + DI++ + L A++ A K S KS+FLAR+SHEIRTPL AIIG ++++ Sbjct: 496 TFVFVCTDITDRITAEQALIEAREQAVKASQAKSEFLARMSHEIRTPLNAIIGITDILAE 555 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 P + AN +G +L ++ND+LDISKIE+ ++ L L+ + Sbjct: 556 SDLKPEQSQLVRVCAN----AGENLLALINDILDISKIEAREVRLEKIAFDLESTTTNIC 611 Query: 673 SLVQLYANEKRILIRTSFANNIPR-----ILADLRSVKQIALNILSNAIHFTPSGG-QII 726 +++ A EK ++ S N+P+ ++ D ++QI N++ NAI FT G ++ Sbjct: 612 DILKQKATEKD--LKFSLTVNLPKNRAPLVIGDPTRLRQILFNLIGNAIKFTQEGEIAVL 669 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + +S + V +RDTG G+ + + F Q +S + G+GLGL ++K +V+ Sbjct: 670 LDFDSSSQKFVRFTIRDTGTGIPKDKQHLLFQSFVQADSSITRKFGGSGLGLTISKNLVE 729 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 G+ + S G+ P T P + Sbjct: 730 LMGGRIWFQSEEGSGSSFYFTVPYVPTEAPREL 762 >gi|330901517|gb|EGH32936.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 573 Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 93/375 (24%), Positives = 165/375 (44%), Gaps = 55/375 (14%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L ++L++ DG+ +I+R+G + N + G+ S + H Sbjct: 237 RLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGW-----------------DESRLGHS 279 Query: 513 LTEILSL-DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-------------- 557 L E L +L + L + G T E L I I YS+T Sbjct: 280 LGEALGRPELDEQLHLVLRGGTLERAPEDLAIEIDGESRLLTYSMTPVSHTKGHVLGAVM 339 Query: 558 -MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI-IGFSEVIKNQRF 615 +HD++E + + +S+F+ R SHE+RTP+T + + F + + F Sbjct: 340 VLHDVTEQRAFERV--------------RSEFVLRASHELRTPVTGMHMAFGLLQERLHF 385 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P R + N + ++ ++NDLL+ S+ ++G L P S++ + EA + Sbjct: 386 AP--ESREADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLQEAKARF 443 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A E+ I++ +PR+ AD ++++ N+L NA+ TP G +I E Sbjct: 444 EDQAQEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTPPNG-LIRLQARRHGE 502 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 I+ V D G G+ + + +PF Q+ + G GLGL L K +V + G+ ++ Sbjct: 503 RAIISVEDNGEGIAYGQQGRIFEPFVQVGRKKG----GAGLGLALCKEIVQLHGGRMGVY 558 Query: 796 STPAKGTLIEIIFPL 810 S P +GT + PL Sbjct: 559 SRPGQGTQFYMALPL 573 >gi|317051227|ref|YP_004112343.1| PAS sensor protein [Desulfurispirillum indicum S5] gi|316946311|gb|ADU65787.1| PAS sensor protein [Desulfurispirillum indicum S5] Length = 1000 Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 133/250 (53%), Gaps = 14/250 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K + ++ A++ AE ++ KS+FLA +SHEIRTP+ A++G + + Sbjct: 460 DVTERKLLEQEMLAARQQAEAANAVKSEFLANMSHEIRTPMNAVLGLIYLCLQTQLSA-- 517 Query: 620 NPRYIEYANYIDRS---GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 E + + RS +LDI+ND+LDISKIE+GK+ + L E + + +L++ Sbjct: 518 -----EQRDMLSRSYAAAESLLDILNDILDISKIEAGKLEVEQVEFPLAEVLDKVFNLLK 572 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 EK + + +P ++ D + Q+ LNI NA+ FT G + + + Sbjct: 573 FRVEEKGLKHSVTVDEEVPSTVIGDPMRLGQVLLNIAGNAVKFTEQGSVSLELFCEAGVD 632 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 +++LR RDTG+GM++ ++E + F Q + + GTGLGL +++ +V G Sbjct: 633 GDLVLRFVFRDTGIGMSHEQMENLFESFNQTDTTITRKYGGTGLGLAISRRLVHLMGGDI 692 Query: 793 YIFSTPAKGT 802 + S P KG+ Sbjct: 693 QVESEPGKGS 702 >gi|205374548|ref|ZP_03227344.1| sensory box histidine kinase PhoR [Bacillus coahuilensis m4-4] Length = 527 Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 97/359 (27%), Positives = 177/359 (49%), Gaps = 28/359 (7%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G ++ N+ +LF + L+K Sbjct: 176 ELQQDRLLTLIENMGSGLLLIDPRGFVVLMNKTFKELFEVDPSNYLKK------------ 223 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS-EWKQ 566 Y I D+ + +E++ + K K L L + +++ F Y + IS EWK Sbjct: 224 ---RYHEAIQHEDIIKVVEEVFMTEEKVRKQLLLPLHLERKHFE-VYGAPIIGISDEWKG 279 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 ++ + E K DF+A VSHE++TP+T+I GFSE + + G L + +EY Sbjct: 280 ILLVFHDITELKKLEQMRK-DFVANVSHELKTPITSIKGFSETLLD---GALEDRDTLEY 335 Query: 627 -ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 N + + + ++ DLLD+SK+E L L + E + +++ A EK I Sbjct: 336 FLNIMLTESDRLQSLIQDLLDLSKLEQHGFKLDVSTFDLSRLLEEVVLMLKGKAEEKEIQ 395 Query: 686 IRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 ++ IP + D+ KQ+ +N+++NAI +T GG + + +E+ ++V+D Sbjct: 396 LQ---FEPIPELTLEGDMNRFKQVFINLINNAISYTGPGGHVKVFVKE-ERDEITIKVQD 451 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GVG+ EL + + F +I ++ GTGLGL + K +V+A+ G+ + S+ GT Sbjct: 452 NGVGIAASELPRIFERFYRIDKARSRNSGGTGLGLAIVKHIVEAHHGEIDVESSEGVGT 510 >gi|192361677|ref|YP_001982922.1| putative sensor/response hybrid [Cellvibrio japonicus Ueda107] gi|190687842|gb|ACE85520.1| probable sensor/response hybrid [Cellvibrio japonicus Ueda107] Length = 916 Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/247 (32%), Positives = 125/247 (50%), Gaps = 20/247 (8%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 ++W+Q A AE S KS FLA +SHEIRTPL I+G + ++ P Sbjct: 242 AQWRQ-------ATASAEAASQAKSQFLAVMSHEIRTPLNGILGMTNLLLETEL----TP 290 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + +A RSG +L I+ND+LD SK+E+GK+ L P L+ V + A+ Sbjct: 291 KQKRFARVARRSGEDLLLIINDILDFSKVEAGKLELEIHPFQLNLLVEDLAERYAPIAHA 350 Query: 682 KRILIRTSFANNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K + + + +P + A D + Q+ N+LSNAI FT G ++ + E+ +L Sbjct: 351 KGLELLCN--TPLPPLSAEGDAARLAQVLTNLLSNAIKFTERG-EVTLEVKLLLREDNLL 407 Query: 740 R----VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 VRDTG+G+ + E+ F Q +S R GTGLGL +++ +V+ G + Sbjct: 408 HLHFGVRDTGIGIRVEQAERLFNAFTQADSSMTRRYGGTGLGLAISQCLVELMGGHIALE 467 Query: 796 STPAKGT 802 S P KG+ Sbjct: 468 SEPGKGS 474 >gi|86609856|ref|YP_478618.1| sensory box histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558398|gb|ABD03355.1| sensory box histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 700 Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 96/370 (25%), Positives = 182/370 (49%), Gaps = 22/370 (5%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L +++ + D +++ E +L N A S++FG+ + +L KP L ++ + Sbjct: 317 KLETLVFSIVDAAILLDAELRVLLLNPAASRMFGWEGDPVLGKPLPELLPEDLQQQLARP 376 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 L +I D Q E++ + T K + +RI++ P S + I Q+ + Sbjct: 377 LMQIARGD--QEAEEVRVNLTGPTKRV-IRILLS--PVSDPRRQNLKGIVMTVQDITR-- 429 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG-PLGNPRYIEYANYID 631 ++ E+ K+ F++ +SHE+RTPL +I F E + +G + + ++Y + Sbjct: 430 ---EVELNEA--KAQFISNISHELRTPLFSIKSFIETLYE--YGEQMSSAERLDYLEIAN 482 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 R + + +VND+LD+S++ESGK HFE V + + + + QL A +K I +R Sbjct: 483 RETDRLTRLVNDVLDLSRLESGK-QYHFEGVDIAAVIEQTLRTHQLQARDKGIQLRKFVD 541 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-----IISTTHTSNEEVILRVRDTGV 746 ++P + + + Q+ N+L NA+ FTPSGG + ++ S + V + V DTG+ Sbjct: 542 PDLPLVWGNYDLLLQVMTNLLGNALKFTPSGGLVTVHAHLVVQADGSPQAVRVAVADTGI 601 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ + E+ F ++ N EGTGLGL + + +++ + + + S +G+ Sbjct: 602 GIAPEDQERIFDRFFRVENRVHTL-EGTGLGLAIVRNILEKHRTRICLESKLEQGSTFWF 660 Query: 807 IFPLYDTSHP 816 LY P Sbjct: 661 DLHLYTEEGP 670 >gi|312215607|emb|CBX95559.1| similar to putative histidine kinase group protein [Leptosphaeria maculans] Length = 1313 Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/253 (29%), Positives = 130/253 (51%), Gaps = 14/253 (5%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 +E ++L A++ S KS+ LA SHE+RTP+ +IG SE++ + N E Sbjct: 705 KENSRLLANTAAAKEASRMKSNLLANTSHELRTPIAGVIGMSELLFDMDL----NEEQKE 760 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I RS + +L ++ND+LD SK+ESG++++ SL + + ++ A K + Sbjct: 761 CTENIHRSASSLLTVINDILDFSKVESGRLDVEEVQFSLSVVLRDVNKMMSFAAQRKGLA 820 Query: 686 IRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----V 737 ++ + + R++ D ++QI +N+L+N+I FT G ++ T S E V Sbjct: 821 YQSFIQDEVEMDLRVMGDPGRLRQILINVLTNSIKFTSVG--VVKLTVGISRETKNTVTV 878 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V DTG+G+ ++ +PF Q +S R GTGLGL ++K +V+ G+ ++ S Sbjct: 879 NFTVSDTGIGIEEEVRKRLFQPFSQADSSTARRFGGTGLGLAISKNLVELMKGQIWLDSK 938 Query: 798 PAKGTLIEIIFPL 810 +GT P Sbjct: 939 LGQGTTATFWIPF 951 >gi|223939259|ref|ZP_03631140.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514] gi|223892091|gb|EEF58571.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514] Length = 844 Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 123/241 (51%), Gaps = 21/241 (8%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ + KS+FLA +SHE+RTP+ +IG + ++ + EY S + +L Sbjct: 181 EEATLAKSEFLANMSHEVRTPMNGVIGMTALLLDTEL----TDEQREYVEATRSSADAML 236 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 I+ND+LD SKIESGK++L P L + EA+ L+ A EK + + S + IP+IL Sbjct: 237 TIINDILDFSKIESGKLDLESHPFELHTCIEEALDLLAPKAAEKDLDLAYSVDDAIPKIL 296 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEE-------------VILRV 741 D+ ++QI +N++ NA+ FT G Q+ + H ++ + + V Sbjct: 297 VGDVTRLRQILVNLIGNAVKFTNEGEVFIQVKPAPKHFNDRDRSASSITGPDMWMLQFSV 356 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RDTGVG+ + + K F Q+ S GTGLGL + K + + G + S KG Sbjct: 357 RDTGVGIPIDKQHRLFKSFQQVDASTTRHYGGTGLGLAICKKLSELMGGDIQVESDAGKG 416 Query: 802 T 802 + Sbjct: 417 S 417 >gi|32477267|ref|NP_870261.1| histidine protein kinase homolog GacS [Rhodopirellula baltica SH 1] gi|32447818|emb|CAD77336.1| histidine protein kinase homolog GacS [Rhodopirellula baltica SH 1] Length = 1182 Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 96/382 (25%), Positives = 174/382 (45%), Gaps = 41/382 (10%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++ +A D + +I+ + I+ N + S+L ++ +P + + L E Sbjct: 328 ALFDAAGDAVLLIDDQRAIVEANPSASELLQAGGGRLVGRPLNDLISPVSNQWGGLPLAE 387 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF--SSCYSLTMHDISEWKQEKNKLSH 573 L LR+ GS+ E + + I +P ++ ++ + D++ + + Sbjct: 388 RHQLRLRRGD-----GSSFESE-----VSIHHIPVGDATGQAVIIRDVTLQRAAFEAMRE 437 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK AE+ + K+ F+A +SHE+RTPL I G ++++ Q P RY+ N I ++ Sbjct: 438 AKAAAEQANRTKTQFMAGISHELRTPLGGIRGLTDLLGQQTL-PTAARRYV---NLIAQN 493 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 L+ D++ D+LD + IE+G++ + PV L E V +A + + +K + + S A + Sbjct: 494 TELLRDVIEDILDFAAIEAGRVAIDPVPVDLHEVVGDAFGCLAVRVADKPVRLCLSIAPD 553 Query: 694 IP-RILADLRSVKQIALNILSNAIHFT----------------PSGGQIIIS---TTHTS 733 P R++AD + ++QI +N+ NAI FT PS G S TT+ S Sbjct: 554 TPRRVIADPKRIRQIVINLAGNAIKFTNRGEVSLRLGPIGDAPPSHGNDANSPEITTNGS 613 Query: 734 NEEVI-----LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 ++ L V DTG+G+ + F Q + GTGLGL +A+ + Sbjct: 614 TDDTPMAWFELTVSDTGIGIAPENQSRIFDAFEQADRGTNKQFGGTGLGLAIARGLAQRM 673 Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810 G + S G+ + L Sbjct: 674 GGDITVTSQVDLGSQFQCALAL 695 >gi|327538858|gb|EGF25501.1| sensory box histidine kinase [Rhodopirellula baltica WH47] Length = 417 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 95/374 (25%), Positives = 178/374 (47%), Gaps = 28/374 (7%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQ 503 R + E Q S L SDG+ ++ ++ +L N + +L G D +L + FT + Sbjct: 62 RCLHAETRQNASALLQLSDGVIVLAKDFSVLLINPSAVRLLGLKKRDALLGRCFTELVR- 120 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDI 561 + L I S Q ++ T+ + + LR+ + + L++ D Sbjct: 121 -----VPQLLASIRSAVREQQPQEFTVEVHDQGVMRPLRVRVDLIDTGEEPNLQLSLRDE 175 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E A+++ E + +F+A VSHE++TPL AI G++E ++ +P Sbjct: 176 TE----------ARRVEEM----RREFIANVSHELKTPLAAIKGYAETVE---LAVQDDP 218 Query: 622 -RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + + I + +V++++ +++ ++G NLH VSL E VS+AI + A Sbjct: 219 DAALHFMQQIMSQCLRLERLVHEMMQLARAQAGPANLHLSSVSLSEIVSDAIRTYEPVAA 278 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + + + +I+AD + IA N++ NA+ +TPSGG+I +S +++ ++ Sbjct: 279 ANGLDLIQEVPSGEAKIIADREATLTIANNLIGNALRYTPSGGEIRVSIVEQTDQWALV- 337 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTGVG+ E ++ + F + +++ GTGLGL + K + A G + STP + Sbjct: 338 VEDTGVGIPYSEQQRIFERFYRGSRNEESSTSGTGLGLAIVKHLTQAQQGDVSVTSTPGE 397 Query: 801 GTLIEIIFPLYDTS 814 G+ + P S Sbjct: 398 GSRFCVCLPAVQAS 411 >gi|92113759|ref|YP_573687.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens DSM 3043] gi|91796849|gb|ABE58988.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens DSM 3043] Length = 930 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 129/236 (54%), Gaps = 8/236 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A + A + + KS FLA +SHEIRTPL IIGF +++ + R E+ Sbjct: 258 ELDMAHRRALEANRIKSQFLANISHEIRTPLNGIIGFCQLLGRSAL----DSRQREWLEQ 313 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + + + +L +++D+LD SKIE+GK+ L PV + V E + L A K + + Sbjct: 314 VQTASDNLLSLISDVLDFSKIEAGKLELETVPVDMVTLVDEVLGLQAPTAQRKSLHLLGL 373 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTG 745 +++P ++L D +KQI N+++NA+ FT G ++++ + ++ ++ + VRDTG Sbjct: 374 VYDDVPDQLLGDPLRIKQILTNLVNNAVKFTERGEVVVRVMLDDLNATSSKLRISVRDTG 433 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +G+ E+ + F Q S+ + GTGLGL ++K +V+ G + S +G Sbjct: 434 IGLDLPSRERLFQAFSQGDASRSRKYGGTGLGLMISKRLVEQMGGDIDVESESGEG 489 >gi|16130156|ref|NP_416723.1| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia coli str. K-12 substr. MG1655] gi|89109038|ref|AP_002818.1| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia coli str. K-12 substr. W3110] gi|157161703|ref|YP_001459021.1| sensory histidine kinase AtoS [Escherichia coli HS] gi|170081839|ref|YP_001731159.1| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia coli str. K-12 substr. DH10B] gi|238901394|ref|YP_002927190.1| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia coli BW2952] gi|256022098|ref|ZP_05435963.1| sensory histidine kinase AtoS [Escherichia sp. 4_1_40B] gi|301024239|ref|ZP_07187934.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 196-1] gi|307138878|ref|ZP_07498234.1| sensory histidine kinase AtoS [Escherichia coli H736] gi|312973527|ref|ZP_07787699.1| signal transduction histidine-protein kinase atoS [Escherichia coli 1827-70] gi|732226|sp|Q06067|ATOS_ECOLI RecName: Full=Signal transduction histidine-protein kinase AtoS gi|290419|gb|AAA23449.1| ORF-1 [Escherichia coli] gi|1736874|dbj|BAA16015.1| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia coli str. K12 substr. W3110] gi|1788549|gb|AAC75279.1| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia coli str. K-12 substr. MG1655] gi|157067383|gb|ABV06638.1| sensory box histidine kinase AtoS [Escherichia coli HS] gi|169889674|gb|ACB03381.1| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia coli str. K-12 substr. DH10B] gi|238863521|gb|ACR65519.1| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia coli BW2952] gi|260448687|gb|ACX39109.1| signal transduction histidine kinase, nitrogen specific, NtrB [Escherichia coli DH1] gi|299880502|gb|EFI88713.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 196-1] gi|310332122|gb|EFP99357.1| signal transduction histidine-protein kinase atoS [Escherichia coli 1827-70] gi|315615481|gb|EFU96113.1| signal transduction histidine-protein kinase atoS [Escherichia coli 3431] gi|320199814|gb|EFW74403.1| Sensory histidine kinase AtoS [Escherichia coli EC4100B] gi|323936834|gb|EGB33119.1| hsp90-like protein [Escherichia coli E1520] gi|323941086|gb|EGB37273.1| hsp90-like protein [Escherichia coli E482] Length = 608 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 188/398 (47%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 229 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 288 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 289 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 341 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 342 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 396 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q P+ + EY + + + + + ++ LL+ S+ Sbjct: 397 AHEVRNPLTAIRGYVQILRQQTSDPI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 452 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 453 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL 508 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 509 INAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFF------TTKAS 562 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 563 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 600 >gi|325262857|ref|ZP_08129593.1| sensory box histidine kinase/response regulator [Clostridium sp. D5] gi|324031951|gb|EGB93230.1| sensory box histidine kinase/response regulator [Clostridium sp. D5] Length = 581 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 132/241 (54%), Gaps = 10/241 (4%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + K+ A + AE + KS+FL+R+SHEIRTP+ I G + + K L +P ++ Sbjct: 187 RKKVQMALETAEHANRAKSEFLSRMSHEIRTPMNGITGMTSIAKK----SLNDPGKLQDC 242 Query: 628 -NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 N I+ S +L ++ND+LD+S+IESGK+ L P +L E + + A + I + Sbjct: 243 LNKIELSSGYLLSLLNDVLDMSRIESGKLELECRPFNLTEVFERIYVMFKQKAEDAGISL 302 Query: 687 RTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST--THTSNEEVILR--V 741 + +P ++ D + Q+ +N++SNA+ FTP+GG++I+ T ++EV L+ V Sbjct: 303 EFQCGDIEVPSVIGDNLRITQVFVNLISNALKFTPAGGRVILEAHETEIKDQEVSLQFTV 362 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G+G+ ++ PF Q + + GTGLGL + V+ G+ ++S +G Sbjct: 363 TDSGIGINEEFQKRIFIPFEQEQSGTARQYGGTGLGLAICSNFVELMGGQISVYSKTGEG 422 Query: 802 T 802 + Sbjct: 423 S 423 >gi|220907505|ref|YP_002482816.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219864116|gb|ACL44455.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 882 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 133/255 (52%), Gaps = 25/255 (9%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A++ + K +FLA +SHE+R+PL I+G+++++ N+R + P + + I+R+ + Sbjct: 482 AQEANRIKDEFLAVLSHELRSPLNPILGWAKILLNRR---VDEPTTRQAISIIERNAKIQ 538 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 + +++DLLD+S+I GK++L V L ++ AI V+L A K+I I+T F + Sbjct: 539 IQLIDDLLDVSRILKGKLSLTITDVDLKAVITAAIETVRLAAEAKQIQIQTRFLAEEGLV 598 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQI---------------------IISTTHTSNEE 736 D+ ++Q+ N+LSNAI FTPSGG+I + +++ Sbjct: 599 RGDVGRLQQVIWNLLSNAIKFTPSGGRIEVRLESGAQGSEGLNPASPSQLFPVLESASPS 658 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + V DTG G+T L F Q +S + G GLGL +A+ +++ + G S Sbjct: 659 IKISVIDTGKGITPEFLPYIFDYFRQADSSTTRKFGGLGLGLAIARHIIELHGGTIAAES 718 Query: 797 -TPAKGTLIEIIFPL 810 AKG + PL Sbjct: 719 PGEAKGATFTVHLPL 733 >gi|163813929|ref|ZP_02205323.1| hypothetical protein COPEUT_00082 [Coprococcus eutactus ATCC 27759] gi|158450799|gb|EDP27794.1| hypothetical protein COPEUT_00082 [Coprococcus eutactus ATCC 27759] Length = 779 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 130/250 (52%), Gaps = 14/250 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + E +Q +L+ AK A+ + KS+FLA +SHEIRTPL I+G +E+I + Sbjct: 199 LEEIEQINEELTRAKDDADVANHAKSEFLAHMSHEIRTPLNTIVGMNEIIMRETH----E 254 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + ++ A I S ++++D+V D+LD SKIESG+M + E + +S +S+++ A Sbjct: 255 EQTMKCARDIQSSSDVLVDLVRDVLDFSKIESGRMEIVNEEYHFSQLLSNVLSVMESRAR 314 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---- 735 +K + + + L D + +I +N++ NA+ +T G I T H N Sbjct: 315 QKNLELDAEVQETLYNDLKGDSARICRILINLIGNAVKYTKKGS--IRVTVHMENHGADP 372 Query: 736 ---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 E+++ VRDTG+G+ + E+ K F ++ S EGTGLGL + +V+ G Sbjct: 373 HNVELVMAVRDTGIGIKEEDQERLFKDFERLDLSNNRSIEGTGLGLAITYHLVEMMGGSI 432 Query: 793 YIFSTPAKGT 802 S GT Sbjct: 433 TCHSKYGYGT 442 >gi|160943810|ref|ZP_02091041.1| hypothetical protein FAEPRAM212_01308 [Faecalibacterium prausnitzii M21/2] gi|158444984|gb|EDP21987.1| hypothetical protein FAEPRAM212_01308 [Faecalibacterium prausnitzii M21/2] Length = 648 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/260 (31%), Positives = 137/260 (52%), Gaps = 17/260 (6%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 ++ +++ KL A + + K +FL +SH+IRTP+ AIIGF+ + Sbjct: 116 AQLEEQNRKLELAVRHEAAANRAKREFLFNMSHDIRTPMNAIIGFTSLAATHVDN---KE 172 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + ++Y I S +L ++ND+LD+S+IESGK+ + + V L + V + S++Q + Sbjct: 173 QVLDYLKKISTSSQHLLSLINDVLDMSRIESGKVKIEEKAVHLPDLVHDIRSIIQPNISS 232 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-------TS 733 KR+ + + + I+ D + Q+ LNILSNAI FTP+GG + I Sbjct: 233 KRLSLFIDTMDVVDEDIITDPLRLNQVLLNILSNAIKFTPTGGMVSIRIAQKPGAPKGCG 292 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG-EGTGLGLPLAKAMVDANMGKF 792 N E R++D G+G+ N E +K + S + G +GTGLGL + K +VD G Sbjct: 293 NYE--FRIKDNGIGI-NKEFQKHIFEEFTREESSTVSGIQGTGLGLSITKNIVDLMGGTI 349 Query: 793 YIFSTPAKGT--LIEIIFPL 810 + S P KG+ ++ + FPL Sbjct: 350 TLESEPGKGSEFIVNLCFPL 369 >gi|124003289|ref|ZP_01688139.1| two-component hybrid sensor and regulator [Microscilla marina ATCC 23134] gi|123991387|gb|EAY30818.1| two-component hybrid sensor and regulator [Microscilla marina ATCC 23134] Length = 1269 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 134/246 (54%), Gaps = 7/246 (2%) Query: 567 EKNKLSHAKKIAEKE--SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 EK +L A++ + E + +KS+FLA SHEIRTPL IIG +E + + GPL N + + Sbjct: 573 EKARLELARRTEQLELANKYKSEFLANTSHEIRTPLNGIIGLTESLIDGAAGPL-NEKTM 631 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 I+ S + +VND+LD S++E+ ++ + +P V + + + +K + Sbjct: 632 SNLELINSSAIRLSTLVNDILDFSRMENHELGIQRKPTDFYAIVDVVVRVSRELIGDKDL 691 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 ++ + +IP I D ++QI N++ N I FT SG Q+ +S T++ + + V+DT Sbjct: 692 VLVNTIGKDIPIIEGDENRLQQILYNLIGNGIKFTESG-QVTLSA-KTTDAFLSVSVKDT 749 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ ++ + F Q S GTGLGL ++K +V+ + G + S KG+ Sbjct: 750 GIGISPESQDRIFESFEQEDGSTSRNYGGTGLGLAISKELVELHGGTIQLKSEVGKGS-- 807 Query: 805 EIIFPL 810 E IF L Sbjct: 808 EFIFTL 813 >gi|134094677|ref|YP_001099752.1| putative two-component sensor kinase (partial) [Herminiimonas arsenicoxydans] gi|133738580|emb|CAL61625.1| putative two-component sensor kinase (C part) [Herminiimonas arsenicoxydans] Length = 577 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/262 (29%), Positives = 143/262 (54%), Gaps = 10/262 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KNQR 614 L +I ++ L AK+ AE + K+ ++A +SHE+R+PL +I+G+S+++ KN+ Sbjct: 97 LLTQEIEAHQRTDVALQSAKEAAEFANQAKTRYVAGISHELRSPLNSILGYSQILLKNEH 156 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 PR I RSG +L +V++LLD+++IE+ +M L P+ L + + +S+ Sbjct: 157 LA--AAPR--TAIQTIHRSGEHLLGLVDELLDLARIEADRMRLEPAPILLSAFLEDLLSM 212 Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 V+ A K + + ++ I R +LAD + ++QI +N+L+NA+ FT G + S Sbjct: 213 VRPQAEAKGLKLLCTYNGKISRYVLADGKRLRQIFINLLTNAVRFTDDGS--VTLHVECS 270 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKF 792 V V DTG+G+ + ++ +PF + + ++RGE G GLGL + + ++ G Sbjct: 271 PASVRFDVVDTGIGIAVQDRQRIFQPF-ERGAAGRLRGEPGAGLGLAITEKLILLMNGSL 329 Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814 + S +G+ + PL + + Sbjct: 330 NLVSMQGQGSTFIVRLPLTEIT 351 >gi|167646509|ref|YP_001684172.1| histidine kinase [Caulobacter sp. K31] gi|167348939|gb|ABZ71674.1| histidine kinase [Caulobacter sp. K31] Length = 698 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 89/273 (32%), Positives = 140/273 (51%), Gaps = 18/273 (6%) Query: 539 LSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 L +R ++++L S + M D+ E A+ AE+ S KS FLA +SHEIR Sbjct: 288 LRVRQVLRELHASEAGQKAAMADVVE----------ARDRAERASLAKSQFLANMSHEIR 337 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TPL ++G ++V+ +R G LG+P + E+ I SG +L I+ND+LD+SKIE+G+ L Sbjct: 338 TPLNGVLGMAQVM--ERSG-LGSP-HREHLKIIRDSGETLLAILNDVLDLSKIEAGRFEL 393 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAI 716 L E + A L A +K + A + + D ++Q+ N+ SNA+ Sbjct: 394 DDHVFDLAETIGAACRPFALLARQKDVAFVKDIAPDALGAWCGDSVRLRQVLSNLASNAV 453 Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 FT GQI ++ TS E + + DTG+G+ + + F Q +S R GTGL Sbjct: 454 KFTHE-GQIRLTVGATS-EGLTFTLTDTGIGIAPDRIASLFEKFVQADSSTTRRFGGTGL 511 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GL +++ +V+ G + S P KG+ P Sbjct: 512 GLAISRELVERMGGTLRMDSAPGKGSTFVFRLP 544 >gi|29827626|ref|NP_822260.1| two-component system sensor kinase [Streptomyces avermitilis MA-4680] gi|29604726|dbj|BAC68795.1| putative two-component system sensor kinase [Streptomyces avermitilis MA-4680] Length = 1424 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/261 (30%), Positives = 136/261 (52%), Gaps = 15/261 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I + +QE + +A K +KS+FLA +SHE+RTPL +++ ++++ L Sbjct: 841 IEQARQELEARAQQLSLASK---YKSEFLANMSHELRTPLNSLLILAQLLAQNPSHNL-T 896 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P+ +EYA I +G+ +L ++ND+LD+SK+E+GKM++ E V+L + + + + Sbjct: 897 PKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGKMDISPERVALRRLLDYVEATFRPMTS 956 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG----------QIIIST 729 +K + S A +P +L D ++Q+ N+LSNA+ FT GG Q I + Sbjct: 957 QKSLEFTMSTAPGVPVDLLTDDSRLRQVLRNLLSNAVKFTERGGVGLHIEPAVDQNIPAA 1016 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 H V V+DTG+G+ +LE F Q + + GTGLGL + + + Sbjct: 1017 VHRGGAVVAFHVKDTGIGIPEQQLETIFGAFQQADGTTSRKYGGTGLGLSITREIAHLLG 1076 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G + STP +G+ + P+ Sbjct: 1077 GAVTVDSTPGQGSTFTLYLPV 1097 >gi|197285590|ref|YP_002151462.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Proteus mirabilis HI4320] gi|194683077|emb|CAR43602.1| two component system, [includes both sensor kinase and response regulator domains] (capsular synthesis regulator component C) [Proteus mirabilis HI4320] Length = 942 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 11/262 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS + + L + AE+ + KS FLA VSHE+RTPL IIG E++++ Sbjct: 445 DISARVKMERSLQNMATAAEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSLT----Q 500 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N +D S +L+L I++D+LD SKIES ++ + +P + + VS IS Sbjct: 501 NEETARLLKTMDNSSSLLLKIISDILDFSKIESKQLKIDVKPFNCRQVVSFVISNYLPLI 560 Query: 680 NEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +K + I ++P+I+ D V+Q+ N+L+N+I FT +G T H +E Sbjct: 561 AKKDLAIYCFIEPDVPKIVNNDPVRVQQVISNLLNNSIKFTTTG----CITLHLYRDEYY 616 Query: 739 LR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 L + DTG G+ L + +PF Q+ + + EGTGLGL + + +++ G + S Sbjct: 617 LYFDIHDTGRGINEKMLHQLFEPFFQVSQNTESASEGTGLGLAICEKLINLMDGDISVVS 676 Query: 797 TPAKGTLIEIIFPLYDTSHPHD 818 G+ + PLY + D Sbjct: 677 QENVGSRFTVRIPLYGALNSSD 698 >gi|304321061|ref|YP_003854704.1| putative two-component sensor [Parvularcula bermudensis HTCC2503] gi|303299963|gb|ADM09562.1| putative two-component sensor [Parvularcula bermudensis HTCC2503] Length = 383 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 135/247 (54%), Gaps = 9/247 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ + +L AK A++ ++ KS F+A +SHEIRTPL IIG +E + + R L Sbjct: 127 KRTETELRRAKSEAQEGAAAKSKFIALLSHEIRTPLHGIIGMAEALGSSRLDDL----QA 182 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E +D + N +L IVN++L+ ++ + +++ E S+ +A+ + + + A +K + Sbjct: 183 ELVGALDEASNQLLQIVNNILEQAENSAKGVSIEVEVASVPDAIETVLRVHREAAAKKGL 242 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + N+P R++ D Q+ N++SNAI FT + I TT +++ VRD Sbjct: 243 TLTCRIRQNVPTRLIFDPLRFGQVLGNLVSNAIKFTDT--GTITVTTDYDGHLLVVSVRD 300 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG GM LE +PFG+ + R G+GLGL + + +++A G+ FST GT+ Sbjct: 301 TGRGMPPETLETCFEPFGKATKADPDR--GSGLGLSICREIIEATGGEIEAFSTQGVGTV 358 Query: 804 IEIIFPL 810 +E+ P+ Sbjct: 359 VEVRMPV 365 >gi|330811069|ref|YP_004355531.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379177|gb|AEA70527.1| Putative histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 633 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/253 (29%), Positives = 127/253 (50%), Gaps = 9/253 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E Q +L ++ AEK +S KS+FLA +SHE+RTP+ ++G ++++ R Sbjct: 243 EQHQAMAQLIKTREEAEKANSAKSEFLAMMSHELRTPMNGVLGMLQLLETTRM----TDE 298 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 EY S +L ++ND+LD S+IE + L P +L E VS Q A ++ Sbjct: 299 QHEYTALASESTEHLLKVINDILDFSRIERSALELEHIPFNLAELVSSCAQSFQHSAAQR 358 Query: 683 RILIRTSFANNIP--RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-- 738 ++ + +++ ++ D ++QI +N++ NA+ FT G + + E++ Sbjct: 359 KLGLDLLVPDDMQALQVQGDPTRIRQILVNLIGNALKFTEQGRVTVQCQWQALDHELLWF 418 Query: 739 -LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 VRD+G+G+ LE+ F Q NS R GTGLGLP+A+ + + G S Sbjct: 419 TCTVRDSGIGIPAESLERMFDAFQQADNSISRRYGGTGLGLPIARTLAERMGGTLRAQSE 478 Query: 798 PAKGTLIEIIFPL 810 +G++ + PL Sbjct: 479 EGQGSVFTLEIPL 491 >gi|227356090|ref|ZP_03840480.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Proteus mirabilis ATCC 29906] gi|227163735|gb|EEI48647.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Proteus mirabilis ATCC 29906] Length = 919 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 11/262 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS + + L + AE+ + KS FLA VSHE+RTPL IIG E++++ Sbjct: 422 DISARVKMERSLQNMATAAEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSLT----Q 477 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N +D S +L+L I++D+LD SKIES ++ + +P + + VS IS Sbjct: 478 NEETARLLKTMDNSSSLLLKIISDILDFSKIESKQLKIDVKPFNCRQVVSFVISNYLPLI 537 Query: 680 NEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +K + I ++P+I+ D V+Q+ N+L+N+I FT +G T H +E Sbjct: 538 AKKDLAIYCFIEPDVPKIVNNDPVRVQQVISNLLNNSIKFTTTG----CITLHLYRDEYY 593 Query: 739 LR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 L + DTG G+ L + +PF Q+ + + EGTGLGL + + +++ G + S Sbjct: 594 LYFDIHDTGRGINEKMLHQLFEPFFQVSQNTESASEGTGLGLAICEKLINLMDGDISVVS 653 Query: 797 TPAKGTLIEIIFPLYDTSHPHD 818 G+ + PLY + D Sbjct: 654 QENVGSRFTVRIPLYGALNSSD 675 >gi|238787449|ref|ZP_04631247.1| Multi-sensor hybrid histidine kinase [Yersinia frederiksenii ATCC 33641] gi|238724236|gb|EEQ15878.1| Multi-sensor hybrid histidine kinase [Yersinia frederiksenii ATCC 33641] Length = 888 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/247 (30%), Positives = 127/247 (51%), Gaps = 11/247 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ L+ +K+ AE+ + KS+ L +SHEIRTPL +G E+++N N R Sbjct: 330 KERTLALAKSKQAAEQANHRKSEHLTTISHEIRTPLNGALGAIELLQNTPLTSAQN-RLA 388 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E A S +L I+N+LLD S+IESG++ L E ++ + +A+ + K I Sbjct: 389 ETARQCSHS---LLAIINNLLDFSRIESGQLELAQERTAILPLLDQAMLTIHSQVLSKAI 445 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + T + +P +++ D + +KQI +N+L NA+ FT G I + ++ V D Sbjct: 446 TLSTYVSAEVPLQLVLDGQRLKQILINLLGNAVKFTQQGH--IRLNVEREDSQLCFTVED 503 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG G+ ++ +PF Q + G+GTGLGL +A + G+ ++S P G+ Sbjct: 504 TGCGIDLQHQQQIFRPFAQTSD----YGQGTGLGLTIADNLARMMGGQITLYSQPNCGSR 559 Query: 804 IEIIFPL 810 +I P Sbjct: 560 FVLILPF 566 >gi|323692287|ref|ZP_08106527.1| sensor protein [Clostridium symbiosum WAL-14673] gi|323503662|gb|EGB19484.1| sensor protein [Clostridium symbiosum WAL-14673] Length = 1107 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/232 (35%), Positives = 121/232 (52%), Gaps = 14/232 (6%) Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 DFL+R+SH+IRTP+ AIIG S + K + P+ R + + ID S +L ++ND+LD Sbjct: 597 DFLSRMSHDIRTPMNAIIGMSTIGKLKMEDPV---RVRDCFDKIDTSSRYLLSLINDILD 653 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVK 705 +SKIE+GKM L EP E ++E S++ + E+ I + + R + D +K Sbjct: 654 MSKIETGKMTLTNEPFDFIEMIAELNSIIFPQSLERGIDYEIHHKDPLERCYIGDSLRLK 713 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-------LRVRDTGVGMTNYELEKAMK 758 QI +N+LSNA+ FT GG+I T E+ I + V DTG+GMT LEK + Sbjct: 714 QILMNLLSNAVKFTAPGGKI---RTEIEEEKRINGFAIFKISVSDTGIGMTPEFLEKLYQ 770 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 PF Q G+GLGL + +V+ G S G+ + P Sbjct: 771 PFEQETLDSARNKIGSGLGLSIVYNLVNLMGGDIKAESRKGHGSRFTVRLPF 822 >gi|262406077|ref|ZP_06082627.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294648144|ref|ZP_06725687.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294806365|ref|ZP_06765209.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] gi|262356952|gb|EEZ06042.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292636528|gb|EFF55003.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294446433|gb|EFG15056.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] Length = 396 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/274 (30%), Positives = 141/274 (51%), Gaps = 25/274 (9%) Query: 548 LPFSSCYSLTM-HDISE-WK------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 P + Y L M DIS+ W+ Q++ +L A+ AE+ KS FLA +SHEIRTP Sbjct: 134 FPLDNKYLLCMCRDISQQWEAEQTNAQQQKELKAARVKAEESDRLKSAFLANMSHEIRTP 193 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 L AI+GFS++I N +YA I+R+ ++L++ ND+LD+S +E+ + + Sbjct: 194 LNAIVGFSKLITFATSTEEKN----QYAEIIERNSEMLLNLFNDILDLSSLEADSLKFNI 249 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA--DLRSVKQIALNILSNAIH 717 P+ L + + L Q + ++ + ++ + + A D + QI N+LSNA Sbjct: 250 RPIKLTDI---CLQLKQQFCHKTQNGVKLILDDVDADMYASGDWNRIIQIISNLLSNATK 306 Query: 718 FTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 FTP G I + E+ + V+D+G+G+ + + FG++ + Q GTGL Sbjct: 307 FTPKGE---IHFGYREKEDFVEFYVKDSGIGIPAERVATIFRRFGKVNDFVQ----GTGL 359 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GL L + +V+ G+ ++ S +G+ PL Sbjct: 360 GLTLCRMLVEKMGGRIWLRSQEGQGSRFYFTLPL 393 >gi|238789481|ref|ZP_04633266.1| Histidine kinase [Yersinia frederiksenii ATCC 33641] gi|238722431|gb|EEQ14086.1| Histidine kinase [Yersinia frederiksenii ATCC 33641] Length = 1190 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/256 (29%), Positives = 140/256 (54%), Gaps = 11/256 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DIS+ K + +L A+ AE + KS FLA +SHE+RTP+ AI+G E+ I+N++ P+ Sbjct: 627 DISQRKTVERELEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLELEIRNEQ--PV 684 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + ++ ++ +++D++D +KIE+G++++H V + + ++ Q Sbjct: 685 DKNTLVT----VSKTAQSLMLLLDDIIDSAKIEAGQLSVHPAVVDFRQEMERMFTIYQPI 740 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736 A+E+R+ + + IP +L AD+ ++Q+ N+L NA+ FT GG + T +E+ Sbjct: 741 ADERRLRFTSWMDDQIPDLLMADMLRIRQVMGNLLGNALKFTEHGGVSVDITWEPMDEKR 800 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + + + DTG+G++ +PF Q + R G+GLGL + ++ G+ + Sbjct: 801 GIMNIDITDTGIGISPAAQATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGQITL 860 Query: 795 FSTPAKGTLIEIIFPL 810 S KGT + I PL Sbjct: 861 ESQLGKGTSLFITLPL 876 >gi|162451219|ref|YP_001613586.1| phosphate sensory box histidine kinase PhoR [Sorangium cellulosum 'So ce 56'] gi|161161801|emb|CAN93106.1| phosphate sensory box histidine kinase PhoR [Sorangium cellulosum 'So ce 56'] Length = 498 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 98/374 (26%), Positives = 172/374 (45%), Gaps = 52/374 (13%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L IL+ S+G+ +++R+G IL NRA+ + ED L + S+ N L Sbjct: 142 LAGILDGMSEGVLVLDRDGRILLANRALRAMASLG-EDALGRSVI-------ESIRNARL 193 Query: 514 TEILSL------------DLRQTLEKIT------------LGSTKEEKLLSLRIIIKKLP 549 TE + L DL +TL + LG + E L + Sbjct: 194 TEAIQLAGKRDEPVDVEVDLGRTLPRRLLVRVSRRKGPERLGHDEREALAAWGADHDGAS 253 Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 HD+++ ++ + + ++DF+A VSHE+RTP+TAI +E Sbjct: 254 AEPGLIAVFHDVTDLRRLE--------------TIRTDFVANVSHELRTPVTAISTAAET 299 Query: 610 IKNQRFGPLGNP-RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++ G L +P E+ + IDR + +V+DLLD+SKIE+ L + + A+ Sbjct: 300 LQ---LGALKDPHEAAEFVDVIDRHAKRLRHLVDDLLDLSKIEAKNFRLALSELDIAPAI 356 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 L+ A +R+ + T A+ +P + D R+++Q+ +N+L NAI + G + + Sbjct: 357 EHVTQLLAEAARRRRVTL-TVDASALPPVRCDRRALEQVLMNLLDNAIKYAGEGAHVTVR 415 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + +++V L V D G G+ + L + + F ++ + GTGLGL + K +V+ Sbjct: 416 -ARSVDQQVTLAVADDGPGIPPHHLGRIFERFYRVDAGRSRDLGGTGLGLAIVKHLVELM 474 Query: 789 MGKFYIFSTPAKGT 802 G + S +GT Sbjct: 475 NGSIEVESAIGRGT 488 >gi|327541216|gb|EGF27760.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47] Length = 1150 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 93/382 (24%), Positives = 173/382 (45%), Gaps = 41/382 (10%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++ +A D + +I+ + I+ N + S+L ++ +P + + L E Sbjct: 296 ALFDAAGDAVLLIDDQRAIVEANPSASELLQAGGGRLVGRPLNDLISPVSNQWGGLPLAE 355 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF--SSCYSLTMHDISEWKQEKNKLSH 573 L LR+ GS+ E + + I +P ++ ++ + D++ + + Sbjct: 356 RHQLRLRRGD-----GSSFESE-----VSIHHIPVGDATGQAVIIRDVTLQRAAFEAMRE 405 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK AE+ + K+ F+A +SHE+RTPL I G ++++ Q P RY+ N I ++ Sbjct: 406 AKAAAEQANRTKTQFMAGISHELRTPLGGIRGLTDLLGQQTL-PTAARRYV---NLIAQN 461 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 L+ D++ D+LD + IE+G++ + PV L E V +A + + +K + + S A + Sbjct: 462 TELLRDVIEDILDFAAIEAGRVAIDPVPVDLHEVVGDAFGCLAVRVADKPVRLCLSIAPD 521 Query: 694 IP-RILADLRSVKQIALNILSNAIHFTPSG---------GQIIISTTHTSNEEVI----- 738 P R++AD + ++QI +N+ NAI FT G G + S ++ +N + Sbjct: 522 TPRRVIADPKRIRQIVINLAGNAIKFTNRGEVSLRLGPIGDVPPSHSNDANSPELTTNES 581 Query: 739 ----------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 L V DTG+G+ + F Q + GTGLGL +A+ + Sbjct: 582 TDDTPMAWFELTVSDTGIGIAPENQSRIFDAFEQADRGTNKQFGGTGLGLAIARGLAQRM 641 Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810 G + S G+ + L Sbjct: 642 GGDITVTSQVDLGSQFQCALAL 663 >gi|297531667|ref|YP_003672942.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] gi|297254919|gb|ADI28365.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] Length = 609 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 118/423 (27%), Positives = 190/423 (44%), Gaps = 59/423 (13%) Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 S ++ ++ LAMTF K Q + + +RK+E S Sbjct: 226 SRKVKVYGYDEIGQLAMTFNNLTKKLQEAQATTEG-----------ERRKLE-------S 267 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +L +DG+ +R G ++ N A + E +L + + + Y E Sbjct: 268 VLTHMTDGVIATDRRGRVILINDAALNILNVSRETVLSSSIV-----DVLGIADQYTFET 322 Query: 517 LSLDLRQTLEKITLGSTKEEKLL---SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 L L+ R +L I ST EE + SL +I K+ F + + +HDI+E Sbjct: 323 L-LEERDSL--ILDFSTDEELYILRASLSVIQKEGGFVNGLIVVLHDITE---------- 369 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG-NPRYIEYA-NYID 631 EK + F+A VSHE+RTPLT + + E + + + PR+I+ N + Sbjct: 370 ----QEKIDRERRQFVANVSHELRTPLTTMKSYLEALADGAWQDKDIAPRFIQVVQNETE 425 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 R ++ +VNDLL +SK++S L ++ + I +L ++ IR F Sbjct: 426 R----MIRLVNDLLHLSKLDSKDYKLKKTWINFSAYFHKVIDRFELTKSDN---IR--FV 476 Query: 692 NNIPR----ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 IPR I D + Q+ NI+SNA+ ++P GG I S+E +I+ V D GVG Sbjct: 477 RKIPREAIFIEVDEDKITQVLDNIISNALKYSPQGGTITFRVRKLSDE-IIVSVSDEGVG 535 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +L K + F ++ ++ + GTGLGL +AK +V A+ G + S KGT I Sbjct: 536 IPKADLAKIFERFYRVDKARSRKLGGTGLGLAIAKEVVLAHGGTIWAESKEHKGTTIYFT 595 Query: 808 FPL 810 PL Sbjct: 596 LPL 598 >gi|217967138|ref|YP_002352644.1| GAF sensor signal transduction histidine kinase [Dictyoglomus turgidum DSM 6724] gi|217336237|gb|ACK42030.1| GAF sensor signal transduction histidine kinase [Dictyoglomus turgidum DSM 6724] Length = 815 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 127/233 (54%), Gaps = 6/233 (2%) Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 +A++ KS+F+A VSHE++TPLTAI G+SE++ P R Y I + Sbjct: 459 LAKELDRMKSEFVANVSHELKTPLTAIKGYSELLMKMNLPP---ERVRNYYQIIYKESER 515 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 + +VNDLL++S+IESG++ L + V + + + E + Q ++ I+++ F Sbjct: 516 LTQLVNDLLEVSRIESGRIELKKDMVEIRKIIKERATFFQTRTSKHTIVLQ--FPEYPTF 573 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 +L D + Q+ N+L NAI ++P+GG + + E++++ V+D GVG+ L Sbjct: 574 VLGDSARLTQVFHNLLDNAIKYSPNGGNVWVRVADKM-EDILIEVQDQGVGIPPEHLPHI 632 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F ++ +S + GTGLGL + K++V+A+ GK S +GT I P Sbjct: 633 FDRFYRVDSSLRKSTSGTGLGLSIVKSIVEAHGGKISATSKVGEGTTFTIRLP 685 >gi|257059244|ref|YP_003137132.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] gi|256589410|gb|ACV00297.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] Length = 1611 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/258 (32%), Positives = 144/258 (55%), Gaps = 8/258 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI++ K + +L AK+ A + KS FLA +SHE+RTPL AI+GF++++ R Sbjct: 1130 THKDITQRKHIELELQKAKETAIAANLSKSIFLANMSHELRTPLNAILGFTQLLG--RDT 1187 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L + + E I+RSG +L +++D+LD+SKIE+G++ L L + ++ Sbjct: 1188 SL-SAYHQERLQIINRSGEHLLGLIDDILDLSKIETGQIALFLTDCDLSGLLLTVEEMLS 1246 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSN 734 A K I + +N+PR I D + ++QI +N+L+NAI FT G + ++ + Sbjct: 1247 PKAESKGIKLIIEKDDNLPRYIKIDSKKLRQILINLLNNAIKFTHQGTVTLRVNLSKIDQ 1306 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + VI++ V DTGVG+ EL+ + F Q ++I +G+GLGL +++ +V GK Sbjct: 1307 KAVIVKFIVEDTGVGIAADELDNLFQLFVQAEAGKKI-NQGSGLGLAISQKLVQLMGGKI 1365 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S +G++ P+ Sbjct: 1366 EVNSILNQGSIFSFEIPV 1383 >gi|169829555|ref|YP_001699713.1| alkaline phosphatase synthesis sensor protein [Lysinibacillus sphaericus C3-41] gi|168994043|gb|ACA41583.1| Alkaline phosphatase synthesis sensor protein [Lysinibacillus sphaericus C3-41] Length = 498 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 95/371 (25%), Positives = 180/371 (48%), Gaps = 38/371 (10%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TVFLEQNTP 506 E+E +L +++E + +I REG I NR + FG ++++ K F T+ L ++ Sbjct: 155 EVEEERLKTLIENMGSSLMMIGREGNISIVNRVFLERFGMQIDEVQGKVFRTIGLPKSLE 214 Query: 507 SVMNH-YLTEI-----LSLDLRQTL-EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559 ++H +LTE+ + ++++Q L K G+ +I + MH Sbjct: 215 QFIDHVFLTEMPYRQQIKMEIKQELYNKEVYGAP----------VIGDHGRWLGVVIVMH 264 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E +L +K DF+A VSHE+RTP+T+I GFSE + + + Sbjct: 265 DITELV----RLEQIRK----------DFVANVSHELRTPITSIKGFSETLLDGAYKD-- 308 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 I + I + N + ++ DLL++SKIE ++ P+ L + + L Sbjct: 309 EKMLISFLEIIYKESNRLQMLIQDLLELSKIEQHGFTVNIMPMGLQDVLIRGAELTAPRL 368 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-I 738 +EK + + ++ +++ D + QI N+++NAI ++P + S NE I Sbjct: 369 DEKNMSFQVDIDGDV-QVMGDANRIIQIVTNLITNAITYSPENTTV--SIRLKENETYGI 425 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + + D G+G+ +E+ + + F ++ ++ GTGLGL + K +V+A+ G+ + S Sbjct: 426 IEIEDQGIGIEKHEIARVFERFYRVDRARSRNSGGTGLGLAIVKHLVEAHHGRIQVESEV 485 Query: 799 AKGTLIEIIFP 809 GT + ++ P Sbjct: 486 GVGTTMIVMIP 496 >gi|330982197|gb|EGH80300.1| response regulator receiver [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 1031 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 126/232 (54%), Gaps = 3/232 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ S +KS+FLA +SHE+RTPL + + ++++ + G +++A I +GN +L Sbjct: 347 QRASKYKSEFLANMSHELRTPLNSSLILAKLLA-ENPGENLTAEQVKFAESIYSAGNDLL 405 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++ND+LDISK+E+GK+ + E S+ V +L Q A EK++ P +L Sbjct: 406 NLINDILDISKVEAGKLEVRPENSSVPRLVEGLRTLFQPLAAEKKLAFTVDIQTGAPTML 465 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + ++QI N+LSNAI FT +G + + + + VRD+G+G+ + Sbjct: 466 FTDRQRLEQILKNLLSNAIKFTEAGS-VSMVVSRQPGAGIAFIVRDSGIGIAEEHQQGIF 524 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q + R GTGLGL +++ + G + S P +G++ ++ P Sbjct: 525 EAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLP 576 >gi|315646523|ref|ZP_07899641.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus vortex V453] gi|315278166|gb|EFU41486.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus vortex V453] Length = 1001 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/259 (30%), Positives = 133/259 (51%), Gaps = 13/259 (5%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + DI++ K+ + AK+ AE+ K++FL +SHE+RTP+ IIG E++K Sbjct: 741 MVFRDITDEKE----IIRAKENAERADQAKTEFLTMMSHELRTPMNGIIGMIELLKTTEL 796 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + Y + + S +L I+N++LD SKIE+G M L+ EP+ + + + L Sbjct: 797 ----DEDQRNYTDILMESSGSLLHILNEILDFSKIETGNMTLNSEPIDVQALLESIVDLF 852 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH-T 732 A EK +L+ S +P I+ D ++Q+ +N++SNAI FT G + + H T Sbjct: 853 SAKAKEKGLLLSCSINTTVPDVIIGDGLRLRQVLVNLISNAIKFTNEGSISMSVEGLHRT 912 Query: 733 SNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 +E L +V+DTG+G+ + + F Q+ S + GTGLGL ++K +V+ G Sbjct: 913 GTQEFTLAFQVKDTGIGIPAEQQHQLFMSFSQLHPSLNRKYGGTGLGLAISKKLVELMGG 972 Query: 791 KFYIFSTPAKGTLIEIIFP 809 + S G+ P Sbjct: 973 VIGVESREQLGSSFYFTIP 991 >gi|296448200|ref|ZP_06890097.1| GAF sensor hybrid histidine kinase [Methylosinus trichosporium OB3b] gi|296254284|gb|EFH01414.1| GAF sensor hybrid histidine kinase [Methylosinus trichosporium OB3b] Length = 1142 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 129/233 (55%), Gaps = 3/233 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ S +KS+FLA +SHE+RTPL + + ++++ + + L ++YA I +GN +L Sbjct: 482 ERASRYKSEFLANMSHELRTPLNSALILAKLLADNKSKNL-TAEQVKYAQSITSAGNDLL 540 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-I 697 +++D+LD+SKIE+GK++L EP+ + + + A E+++ +R P I Sbjct: 541 ALIDDILDLSKIEAGKIDLELEPIPIIPLANALERRFEPLATERKLELRIIVDPRCPETI 600 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 AD + + QI N+LSNA+ FT + G++ ++ + V+DTG+G+ + E Sbjct: 601 EADGQRLHQILSNLLSNAVKFTEA-GRVRLTVEPHDERRLAFTVQDTGIGIAADQHEVIF 659 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F Q S + GTGLGL +++ G+ + S P +G+ ++ PL Sbjct: 660 QAFRQANGSTNRKFGGTGLGLSISREFAALLGGELRLRSAPGEGSAFTLLLPL 712 >gi|239906492|ref|YP_002953233.1| putative two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239796358|dbj|BAH75347.1| putative two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1452 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/259 (30%), Positives = 136/259 (52%), Gaps = 15/259 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K+ + L AK AE + KS+FLA +SHEIRTPL I+G ++++ Sbjct: 1053 DINERKRSQADLLSAKVQAEAANKAKSEFLANMSHEIRTPLNGILGMLQLLQTTE----P 1108 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQ 676 N EY RS + +++D+LDIS+IE+G+M++ F+ L +++ E + Sbjct: 1109 NDEQKEYLAGATRSTKRLTRLLSDILDISRIEAGRMDVVETEFDIYQLQDSIRE---IFD 1165 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII----ISTTH 731 A K +++ + + +P ++ D ++QI N++ NAI FT G ++ + + + Sbjct: 1166 TDAQGKGLVLDFIWDDELPTALIGDEARLRQILFNLVGNAIKFTDKGEVLVEASLLPSPN 1225 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 TS+ V+L V DTG+G+ L+ +PF Q S R +G GLGL + + + G Sbjct: 1226 TSSVRVLLTVSDTGIGICEEHLKYIFEPFVQAEISYTKRFQGAGLGLSIVRRLASLLGGD 1285 Query: 792 FYIFSTPAKGTLIEIIFPL 810 I S +GT + + P Sbjct: 1286 ISIDSALGEGTTVYLSLPF 1304 >gi|39726359|gb|AAR30122.1| putative histidine kinase HHK1p [Gibberella moniliformis] Length = 2362 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/248 (33%), Positives = 130/248 (52%), Gaps = 15/248 (6%) Query: 566 QEKNKLSHAK---KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + KN + AK K+AE+ + KS FLA VSHE+RTPL +IG SE++++ N Sbjct: 1918 KAKNAEAEAKRNVKLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDSDL----NKD 1973 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +E A+ I S +L+L ++ND+LD SK+E+ KM L+ + ++ V E + V EK Sbjct: 1974 QLEMADSIRVSADLLLTVINDILDFSKMEADKMKLYIIAFNPEDMVREVVRAVSYSNREK 2033 Query: 683 RILIRTSFANNI--PRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 NI P +L D + Q+ N++ N++ FT G I + +E Sbjct: 2034 TSKKNVKIVQNINLPPMLIYGDPIRLHQVLGNLIGNSLKFTEDGSITIGARLDKETKEHA 2093 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM-GKFYI 794 + VRDTG+G+ +L K +PF Q S + G+GLGL + K++++ M GK + Sbjct: 2094 TLTFWVRDTGIGIPPQQLAKLFQPFSQADASTARKYGGSGLGLSICKSLIETMMKGKIRL 2153 Query: 795 FSTPAKGT 802 S GT Sbjct: 2154 ESEENVGT 2161 >gi|46107708|ref|XP_380913.1| hypothetical protein FG00737.1 [Gibberella zeae PH-1] Length = 1370 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 118/241 (48%), Gaps = 10/241 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTP+T ++G +E++ + EY I S +L ++ND+ Sbjct: 797 KSQFLANMSHEIRTPITGVLGMAELLMGMEL----DQEQQEYVENIQSSATSLLTVINDI 852 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---ILADL 701 LD SK+ESG++++ SL V E ++Q K + ++ + I ++ D Sbjct: 853 LDFSKVESGRLDIEEVQFSLSHIVKEVGRMLQFAVERKNLDFQSDVGDGIENDLVVIGDP 912 Query: 702 RSVKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 V+QI N+L+N+I FT G ++ + EV V D+G+G+ + +K + Sbjct: 913 GRVRQILTNLLTNSIKFTNQGYVRFSVVAEKETSETIEVKFSVEDSGIGIQDDVRKKLFQ 972 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 PF Q S R GTGLGL + K ++D G+ + S GT P + P + Sbjct: 973 PFSQGDASTARRFGGTGLGLTICKNLLDLMHGRITLESKVGVGTRATFWVPFNKPNGPAE 1032 Query: 819 C 819 Sbjct: 1033 A 1033 >gi|302382462|ref|YP_003818285.1| integral membrane sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302193090|gb|ADL00662.1| integral membrane sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 580 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 130/247 (52%), Gaps = 6/247 (2%) Query: 566 QEKNKLSHA-KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 Q+ N + A ++ AE S+ KSDFLA VSHEIRTP+ A+I + +++ R + Sbjct: 185 QDANDEARAERRKAEVASAAKSDFLAVVSHEIRTPMNAVISAANLLRRTRL----DREQR 240 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E+ + + +G++++ ++ND+LD SKIE+GKM L + + L + + I L + A+ + Sbjct: 241 EHVSMLLDAGDVLVGLLNDVLDFSKIEAGKMQLEAQDIDLRDKIGSLIRLWEPKASANGV 300 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 ++ + P RI D ++Q+ N+LSNA+ FT G I + +I+ V D Sbjct: 301 RLKVLIDDAAPARIRTDPLRLQQMLFNLLSNAVKFTEDGTISIAVDWRAEDGRLIVSVAD 360 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG G+ L F Q+ + GTGLGL +++ + + G+ S +G++ Sbjct: 361 TGCGIPADRLAHIFDSFEQVDAGTTRKYGGTGLGLAISRRLAEIMGGRLTAESVEGEGSV 420 Query: 804 IEIIFPL 810 + P+ Sbjct: 421 FTLSLPV 427 >gi|253687500|ref|YP_003016690.1| histidine kinase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754078|gb|ACT12154.1| histidine kinase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 951 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 85/260 (32%), Positives = 129/260 (49%), Gaps = 7/260 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 441 VLLDVSARVKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSL- 499 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P R + N S +L+L I++D+LD SKIES ++ + + E +S S Sbjct: 500 PQDANRLVAAMN---NSSSLLLKIISDILDFSKIESEQLKIEPCEFAPHEVISHITSNYL 556 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +KR+ + +P + D ++Q+ N+LSNAI FT +G II + Sbjct: 557 PLVVKKRLTLYCFIDPKVPVSLFGDPVRLQQVLSNLLSNAIKFTDTG--CIIFEVGCRDG 614 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + VRDTGVG+ E K PF Q + Q +GTGLGL + + +V+ G I Sbjct: 615 YLEFVVRDTGVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITIE 674 Query: 796 STPAKGTLIEIIFPLYDTSH 815 S P G+L + PLY + Sbjct: 675 SEPGLGSLFGVRIPLYKARY 694 >gi|194436351|ref|ZP_03068453.1| sensory box histidine kinase AtoS [Escherichia coli 101-1] gi|253772857|ref|YP_003035688.1| sensory histidine kinase AtoS [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162231|ref|YP_003045339.1| sensory histidine kinase AtoS [Escherichia coli B str. REL606] gi|194425079|gb|EDX41064.1| sensory box histidine kinase AtoS [Escherichia coli 101-1] gi|242377855|emb|CAQ32622.1| AtoS sensory histidine kinase [Escherichia coli BL21(DE3)] gi|253323901|gb|ACT28503.1| signal transduction histidine kinase, nitrogen specific, NtrB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974132|gb|ACT39803.1| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia coli B str. REL606] gi|253978299|gb|ACT43969.1| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia coli BL21(DE3)] gi|323961525|gb|EGB57133.1| hsp90-like protein [Escherichia coli H489] gi|332344001|gb|AEE57335.1| signal transduction histidine-protein kinase AtoS [Escherichia coli UMNK88] Length = 608 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 188/398 (47%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 229 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 288 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 289 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 341 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 342 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 396 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q P+ + EY + + + + + ++ LL+ S+ Sbjct: 397 AHEVRNPLTAIRGYVQILRQQTSDPI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 452 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 453 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL 508 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 509 INAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFF------TTKAS 562 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 563 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 600 >gi|170019467|ref|YP_001724421.1| sensory histidine kinase AtoS [Escherichia coli ATCC 8739] gi|169754395|gb|ACA77094.1| signal transduction histidine kinase, nitrogen specific, NtrB [Escherichia coli ATCC 8739] Length = 608 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 188/398 (47%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 229 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 288 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 289 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 341 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 342 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 396 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q P+ + EY + + + + + ++ LL+ S+ Sbjct: 397 AHEVRNPLTAIRGYVQILRQQTSDPI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 452 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 453 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL 508 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 509 INAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFF------TTKAS 562 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 563 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 600 >gi|90413299|ref|ZP_01221293.1| Hypothetical sensor protein TorS [Photobacterium profundum 3TCK] gi|90325700|gb|EAS42163.1| Hypothetical sensor protein TorS [Photobacterium profundum 3TCK] Length = 984 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 130/239 (54%), Gaps = 20/239 (8%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A+ AEK + KS FLA +SHEIRTP+ ++G + ++ + N + Y I+RS Sbjct: 459 ARNEAEKANRAKSAFLATMSHEIRTPMNGVLGTASLLADTGL----NDQQARYLRVINRS 514 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +LDI+ND+LD SKIE+G +++ SL E V + ++++ A K I + + Sbjct: 515 GETLLDILNDILDYSKIEAGHLDIRPVDFSLSELVLDVHNMLESRALAKHIQLVNHIDDT 574 Query: 694 IPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--EEVILRVRDTGVGMTN 750 + + L D+ ++QI +N++ NAI FT GQ+ I+ + + +E++ V D+G+G+ Sbjct: 575 MNNVWLGDVTRIRQILINLVGNAIKFTDH-GQVTIAVSMNPDMPDELLFEVTDSGIGIEE 633 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-----------NMGKFYIFSTP 798 E + F Q ++ G GTGLGL +++ +V A N+G + FS P Sbjct: 634 AEQDILFNAFKQAEEGRKTIG-GTGLGLAISRHIVAAMDGEIGVDSIINVGSCFWFSIP 691 >gi|20090861|ref|NP_616936.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19915933|gb|AAM05416.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 1000 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 86/261 (32%), Positives = 130/261 (49%), Gaps = 21/261 (8%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI+ K + +L AK+ AE + K DFLA +SHEIRTP+ A++G E++ Sbjct: 417 TLQDITHRKLMEEQLLKAKEAAESANKAKGDFLANMSHEIRTPMNAVLGMLEMLLETSL- 475 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 EY S +L I++D+LD SKIE K+ L L+ +S I+L+ Sbjct: 476 ---TDEQREYLQLAHASAESLLSIIDDVLDFSKIEQNKLELEQISFELESLISHIINLLS 532 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST------ 729 A K + + ++P + D +KQ+ NIL NAI FT G+I +S Sbjct: 533 GKAGSKGLKLAFHIEKDLPSTFIGDPVRLKQVLFNILGNAIKFTKK-GEIALSVEVYMPS 591 Query: 730 ---THTSN----EEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 + SN EEV L +V+DTG+G+ +L + PF Q S GTGLGL + Sbjct: 592 ERNSGLSNSDFPEEVALLFKVKDTGIGIPPEKLSQIFDPFIQADASVTREYGGTGLGLAI 651 Query: 781 AKAMVDANMGKFYIFSTPAKG 801 + +V+ G+ ++ S KG Sbjct: 652 SSQLVELMEGRIWVESEVGKG 672 >gi|330876334|gb|EGH10483.1| response regulator, sensor histidine kinase component GacS [Pseudomonas syringae pv. glycinea str. race 4] Length = 626 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 68/215 (31%), Positives = 125/215 (58%), Gaps = 8/215 (3%) Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHEIRTPL I+GF+ +++ PR +Y I++S + +L I+N++LD SKIE Sbjct: 1 MSHEIRTPLNGILGFTHLLQKSEL----TPRQFDYLGTIEKSADNLLSIINEILDFSKIE 56 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALN 710 +GK+ L P +L + + + ++++ A+ K++ + + + P L+ D ++QI N Sbjct: 57 AGKLVLDNIPFNLRDLLPDTLTILAPAAHAKQLELVSLVYRDTPLALSGDPLRLRQILTN 116 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 ++SNAI FT G + + EE + + V+DTG+G+++ ++ + F Q NS Sbjct: 117 LVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTGIGLSSQDVRALFQAFSQADNSL 176 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + GTGLGL ++K +++ G+ + STP +G+ Sbjct: 177 SRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 211 >gi|198274494|ref|ZP_03207026.1| hypothetical protein BACPLE_00642 [Bacteroides plebeius DSM 17135] gi|198272696|gb|EDY96965.1| hypothetical protein BACPLE_00642 [Bacteroides plebeius DSM 17135] Length = 1398 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/258 (29%), Positives = 132/258 (51%), Gaps = 11/258 (4%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 +KN++ + E+ + K F ++HE RTPLT I+G E + NP+ IE Sbjct: 874 QKNQILEMSRKVEELTVDKLAFFTNITHEFRTPLTLIVGPIERALKLSY----NPQVIEQ 929 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + ++R+ +L +VN L+D K+E G++ + +L E + E + YA + I + Sbjct: 930 LHLVERNSKYLLSLVNQLMDFRKVEEGRIKIATNYGNLKEFMLEIVPPFADYAKNRGINL 989 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST---THTSNEEVILRVRD 743 + P ++ D +++I N++SNA+ FTP GG + I + +++ + VRD Sbjct: 990 QLYLRLPDPFLMFDEDVMRKIMTNLISNALKFTPKGGNVGIYVGVIGQATEKKLFISVRD 1049 Query: 744 TGVGMTNYELEKAMKPFGQIPNS--QQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTPAK 800 TG G+ ++E+ F Q N + + G+ GTG+GL L + ++D GK Y + P K Sbjct: 1050 TGKGIPENDIERIFMQFYQSDNRSLESVSGQSGTGIGLYLCRKLIDLLDGKIYAKNNPLK 1109 Query: 801 GTLIEIIFP-LYDTSHPH 817 G I+ P LY + H Sbjct: 1110 GASFRILLPALYGDTQIH 1127 >gi|158423872|ref|YP_001525164.1| two component sensor kinase [Azorhizobium caulinodans ORS 571] gi|158330761|dbj|BAF88246.1| two component sensor kinase [Azorhizobium caulinodans ORS 571] Length = 811 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 154/758 (20%), Positives = 295/758 (38%), Gaps = 117/758 (15%) Query: 81 RTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ 140 R +RF+W +DA G L IS ELP+ +G +G ++ D+ I + L+ Sbjct: 140 RCLRFSWQMDAAGRLMRISPELPEALGGTEGDWVGRDFQELEDVGLIADAGPMRAALRTG 199 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 +++G T G + I+ +P++ + R+ G RGFG++ ++ A Sbjct: 200 GSFFGLTLR---TGGHPARRIEFGGVPLFDQARQRRGTRGFGLLWGAEPQDEAPAGS--- 253 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 D + H + + S+ + F + + +L+E E++P Sbjct: 254 DAEAQHFNVVPLHGGSLTPRERSAFHEIA-----------RTLSEAI---------EEWP 293 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 +E + PE ++ + ++ GT E ++L Sbjct: 294 KAATE--ARPELDETEPL------REPDAGTASGAQAEGEDHL----------------- 328 Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL---SD 377 +D+ PI V G N + L + + GGLS P+L S Sbjct: 329 -----LDRLPIGIVVQQGGKTVRTNKTLLGWLGVRDTAEFVATGGLS-----PRLVRDSR 378 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP-E 436 + + L+ DR + RL W+ +L P E A P++ P Sbjct: 379 HGGLDLETLH-GDRLPV--EVRLVASPWSGRPALVHVIRPIEGAPAAAAASPESPRGPAS 435 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 V R+ + + + + +++R+G + N A + G+ +D+ +P Sbjct: 436 GVQMRVERSAARRQALDFIPYP------VLLLDRDGTVEMANTAAADACGFTADDLEGEP 489 Query: 497 FTVFL--------------------EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 FT+ L Q+ P + H L + + +T G Sbjct: 490 FTILLAPGCHVQAVAMLDAAAAGKGAQSAPLTLRHR----LGTEEQAEAMLVTTGDPAAR 545 Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR-VSHE 595 L L+ + + + + L+ + + D + R VSH+ Sbjct: 546 FCLVLQTRTE-----AVVEAPSAVPVPAQPQPQPLAPLPPAGVPDDPRRVDAIVRRVSHD 600 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 +R PLT ++GF + +++ +GP+G+ RY + A +G ++D ++DL G + Sbjct: 601 LRDPLTVLLGFVDSVRSNLYGPVGSRRYQQQAETAAAAGQALVDTLDDL--------GAL 652 Query: 656 NLHFE---PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 L E PVSL V++A++ + A + +L+RT+ + ++ A+ ++A +L Sbjct: 653 ALPPEPVTPVSLSPLVTDALAHLSDAARRRGVLLRTALSEDV-TARANPEGFARLARELL 711 Query: 713 SNAIHFTPSGGQIIIS-TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 + A+ TP GGQ+I++ T + +L+VRD G ++ E+ A+ P S + Sbjct: 712 TEAMEATPHGGQVIVTLTADDAAPNALLQVRDGGAALSEEEIAIALDPTRAATVSTRFSR 771 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 G L A+ A G + G L+++ P Sbjct: 772 AGRPFRLARLGALARAIGGDLALTRGLDTGLLVQVSLP 809 >gi|170728964|ref|YP_001762990.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169814311|gb|ACA88895.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 948 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 118/235 (50%), Gaps = 7/235 (2%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A++ AE KS+FLA +SHEIRTP+ ++G ++ ++E A Sbjct: 403 LDEAREEAEATGRAKSEFLACMSHEIRTPMNGVLGMLSLLSRTELDQ-DQQHHLEIAQGS 461 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 +S +L ++ND+LD SKIESGK+NL +L + + E I + + A EK + + Sbjct: 462 AKS---LLTLINDILDFSKIESGKLNLESIEFNLHQTLDELIQPLAIRAQEKSLELTLDI 518 Query: 691 ANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS--TTHTSNEEVILRVRDTGVG 747 + P I D + Q+ N++ NAI FTP G I+ T +N + ++DTG+G Sbjct: 519 SQIKPANITGDPGRITQVLTNLIGNAIKFTPKGSIIVTGKLTAKNNNHRLTFSIQDTGIG 578 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 M +LE + F Q NS GTGLGL +AK + G + S G+ Sbjct: 579 MKQDKLENIFQAFSQADNSTTRHYGGTGLGLSIAKHLSHLMNGDISVTSKENIGS 633 >gi|323487564|ref|ZP_08092856.1| two-component system sensor histidine kinase [Clostridium symbiosum WAL-14163] gi|323399121|gb|EGA91527.1| two-component system sensor histidine kinase [Clostridium symbiosum WAL-14163] Length = 1107 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/232 (35%), Positives = 121/232 (52%), Gaps = 14/232 (6%) Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 DFL+R+SH+IRTP+ AIIG S + K + P+ R + + ID S +L ++ND+LD Sbjct: 597 DFLSRMSHDIRTPMNAIIGMSTIGKLKMEDPV---RVRDCFDKIDTSSRYLLSLINDILD 653 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVK 705 +SKIE+GKM L EP E ++E S++ + E+ I + + R + D +K Sbjct: 654 MSKIETGKMTLTNEPFDFIEMIAELNSIIFPQSLERGIDYEIHHKDPLERCYIGDSLRLK 713 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-------LRVRDTGVGMTNYELEKAMK 758 QI +N+LSNA+ FT GG+I T E+ I + V DTG+GMT LEK + Sbjct: 714 QILMNLLSNAVKFTAPGGKI---RTEIEEEKRINGFAIFKISVSDTGIGMTPEFLEKLYQ 770 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 PF Q G+GLGL + +V+ G S G+ + P Sbjct: 771 PFEQETLDSARNKIGSGLGLSIVYNLVNLMGGDIKAESRKGHGSRFTVRLPF 822 >gi|229121553|ref|ZP_04250780.1| hypothetical protein bcere0016_18570 [Bacillus cereus 95/8201] gi|228662017|gb|EEL17630.1| hypothetical protein bcere0016_18570 [Bacillus cereus 95/8201] Length = 417 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 122/242 (50%), Gaps = 13/242 (5%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L+H EK K++F+A +SHEIRTPLT I G+SE +K L + I Sbjct: 187 LNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKT--VDHLTEEEIKQGMGII 244 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + ++ +V +LLD S+++S NL+ + V L + + E I + A EK++ F Sbjct: 245 SGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKKM----QF 300 Query: 691 ANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 I RI + D +KQI LNI+ NAI ++ G++ I T + VI +V+D G+G+ Sbjct: 301 IKTIERIELIGDRNRLKQIFLNIVQNAIKYSHENGKVYIEATKNEGQAVI-KVKDDGIGI 359 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 L + F QI N G GLGL + K MV+ + G I S GT I I Sbjct: 360 AKEHLPYIEQSFYQINN----HATGAGLGLAIVKKMVELHGGTINIISKEGIGTTILIKL 415 Query: 809 PL 810 PL Sbjct: 416 PL 417 >gi|291560209|emb|CBL39009.1| Signal transduction histidine kinase [butyrate-producing bacterium SSC/2] Length = 751 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/256 (32%), Positives = 131/256 (51%), Gaps = 11/256 (4%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E Q K A ++A S KSDFLA +SH+IRTP+ AI+G + +I++ GN Sbjct: 347 TELTQAKRAAEQAFEVANNASQSKSDFLASMSHDIRTPMNAIMGITSLIRHDA----GNK 402 Query: 622 -RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + IEY + ID S +L I+ND+LD+SKIE+GK + S+ E + E ++ Sbjct: 403 DKVIEYVDKIDVSAQHLLGIINDVLDMSKIEAGKTVFSYSDFSILEFMQEIQTMFCPQTE 462 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIII-----STTHTSN 734 EK + N + + +D + QI N+LSNA+ +T GG+I T ++ Sbjct: 463 EKHQSLVIHHENIVHEWVNSDYVHLMQIFSNLLSNAVKYTQKGGKIQFLVEECETKSSAY 522 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + V D GVGM+ +K F + +S + +GTGLG+ + K +++A G + Sbjct: 523 AKYHFAVIDNGVGMSEDFKDKIFDTFTREESSLTNKIQGTGLGMAITKNLIEAMGGTIDV 582 Query: 795 FSTPAKGTLIEIIFPL 810 S G+ E+ L Sbjct: 583 DSELGLGSCFEVFMDL 598 >gi|237713937|ref|ZP_04544418.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262409155|ref|ZP_06085699.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|294647480|ref|ZP_06725063.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294806519|ref|ZP_06765359.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229446093|gb|EEO51884.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262352902|gb|EEZ01998.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|292637190|gb|EFF55625.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294446277|gb|EFG14904.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|295085278|emb|CBK66801.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 391 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/264 (31%), Positives = 130/264 (49%), Gaps = 12/264 (4%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +T+HD++ KQ +N+L AK+ AEK KS FLA +SHEIRTPL AI GF+EV+ + Sbjct: 138 ITVHDVTRRKQAENELRLAKEKAEKADISKSAFLANMSHEIRTPLNAITGFAEVLGSAN- 196 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 +Y I + +L++ +VND+LD+SKIE+G + V ++ +S+ L Sbjct: 197 ---TEEEKAQYQEIIKMNADLLMQLVNDILDMSKIEAGTLEFVQTTVDVNLLLSDLQQLF 253 Query: 676 QLYANE--KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 Q+ NE + I I + + I D V Q+ N NAI FT G I Sbjct: 254 QMRVNEAGENIQIIAEPSRSSCMIQTDRNRVAQVLSNFAGNAIKFTHEGS--IRIGYEAR 311 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + E+ V+DTG G+ +L + F ++ ++ G GLGL +++ +V G+ Sbjct: 312 DTELYFYVKDTGAGIPAEKLPDVFERFVKLNKDKK----GAGLGLSISQTIVAKLGGQIG 367 Query: 794 IFSTPAKGTLIEIIFPLYDTSHPH 817 S +G+ P P Sbjct: 368 ADSVEGEGSTFWFTIPYRTCGKPR 391 >gi|158340438|ref|YP_001521794.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] gi|158310679|gb|ABW32293.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] Length = 914 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 134/243 (55%), Gaps = 9/243 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q +L AK+ AE + KS F+A +SHE+RTPL I+G+++V++ P + + Sbjct: 433 QQRTAELKVAKEKAEVANQAKSLFIANMSHELRTPLNGILGYAQVLER---SPTISDKAQ 489 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + + I + G +L ++ND+LD+SKIE+GK++L +PV L + ++ A +K + Sbjct: 490 QQVHIIHKCGTHLLGMINDILDLSKIEAGKLDLMPKPVHLTSCLQGVAEACRVRAAQKGL 549 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIIS-TTHTSNEEVIL 739 + +P + D + ++Q+ N+LSNAI FT G Q+ ++ T + + Sbjct: 550 EFVYAVDPGLPEGVELDEQRLRQVLFNLLSNAIKFTQQGTVTLQVSVAEVTRSDYRRLRF 609 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTGVG+ L++ F Q+ + Q+ + EGTGLGL +++ +V + + S Sbjct: 610 GVTDTGVGIAPAHLDQLFNAFVQVGDRQK-QAEGTGLGLAISRRLVQLMGSQIEVQSAVG 668 Query: 800 KGT 802 +G+ Sbjct: 669 QGS 671 >gi|94497919|ref|ZP_01304484.1| two-component system sensor protein [Sphingomonas sp. SKA58] gi|94422647|gb|EAT07683.1| two-component system sensor protein [Sphingomonas sp. SKA58] Length = 1034 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/259 (32%), Positives = 145/259 (55%), Gaps = 10/259 (3%) Query: 566 QEKNKLSHAK-------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 Q++N L+ A+ + E+ S +KS+FLA +SHE+RTPL +++ + ++ + R G L Sbjct: 343 QQRNDLTRAQASLEEQARELEQASRYKSEFLANMSHELRTPLNSLLIMARLLADNRAGNL 402 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + +A I+ SGN +L ++ND+LDISKIE+G ++L P+ + V + +L++ Sbjct: 403 -TAEQVRHAETIETSGNDLLLLINDILDISKIEAGHVDLQTRPMRIAPMVEKLHALLEPG 461 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A +K I +R A+ +P I +D V+QI N LSNAI FT G++ ++ ++ + Sbjct: 462 ARQKGIALRIPAASAMPVEIESDPHRVEQILKNFLSNAIKFT-DKGEVTLTVEEAGDDAI 520 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V DTG+G+ + + +PF Q S + GTGLGL +++ + G+ + S Sbjct: 521 AFTVHDTGIGIPVEQQQTVFEPFRQADGSVSRKYGGTGLGLSISRELAKLLGGEISLVSA 580 Query: 798 PAKGTLIEIIFPLYDTSHP 816 P +G+ + P + T P Sbjct: 581 PGEGSSFTLTLPRHFTETP 599 >gi|153805851|ref|ZP_01958519.1| hypothetical protein BACCAC_00090 [Bacteroides caccae ATCC 43185] gi|149130528|gb|EDM21734.1| hypothetical protein BACCAC_00090 [Bacteroides caccae ATCC 43185] Length = 396 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 85/276 (30%), Positives = 143/276 (51%), Gaps = 29/276 (10%) Query: 548 LPFSSCYSLTM-HDISE-W------KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 P + Y L M DISE W K+++ +L A+ AE+ KS FLA +SHEIRTP Sbjct: 134 FPLDNEYLLCMCRDISEQWNAEQTNKKQQKELEAARIKAEESDRLKSAFLANMSHEIRTP 193 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 L AI+GFS+++ + N + +YA I+R+ ++L++ ND+LD+S +E+ ++ + Sbjct: 194 LNAIVGFSKLVID---AECTNEKE-QYAEIIERNSEILLNLFNDILDLSSLEADSLSFNI 249 Query: 660 EPVSLDEAVSEAISLVQLYA----NEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 P+ L + + L Q + N ++++ + + D + QI N+LSNA Sbjct: 250 RPIKL---IDICLQLEQQFCYKVKNGTKLILDD--VDTELYVSGDWNRIIQIISNLLSNA 304 Query: 716 IHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 FTP G I + E+ + V+D+G+G+ + + FG+I + Q GT Sbjct: 305 AKFTPKGE---IHFGYREKEDFVEFYVKDSGIGIPAERVATIFQRFGKINDFVQ----GT 357 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GLGL L + +V+ G+ ++ S KG+ PL Sbjct: 358 GLGLTLCRMLVEKMGGRIWLRSQEGKGSRFYFTLPL 393 >gi|323488189|ref|ZP_08093440.1| Hybrid signal transduction histidine kinase [Planococcus donghaensis MPA1U2] gi|323398193|gb|EGA90988.1| Hybrid signal transduction histidine kinase [Planococcus donghaensis MPA1U2] Length = 953 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 127/226 (56%), Gaps = 7/226 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+ ++ VSHE+RTPL++++GF+E++ N++ P RY++ I + + +++ND Sbjct: 581 KSELVSTVSHELRTPLSSVLGFTELLLNKQLKPEKQERYLKT---IYKEAKRLTNLINDF 637 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+ ++ESG + ++++E + E + + N I+ ++ I + D + Sbjct: 638 LDLQRMESGDQVYRMDKLAVNELIIETVEKFRT-QNMHSIVFIDDASDVI--VEGDRERI 694 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 Q+ +N++ NAI F+P GG + IS + N + + ++D G+G+ ++ K F +I Sbjct: 695 AQVLMNLVGNAIKFSPQGGSVTISMKNDLNN-LSVTIKDEGIGIPTEDIPKLFSKFQRID 753 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 NS + + GTGLGL + + ++ + GK +I S +GT + PL Sbjct: 754 NSSRRKIGGTGLGLAICQEIILQHEGKIWIESKEEQGTAVHFELPL 799 >gi|317127471|ref|YP_004093753.1| ATP-binding region ATPase domain protein [Bacillus cellulosilyticus DSM 2522] gi|315472419|gb|ADU29022.1| ATP-binding region ATPase domain protein [Bacillus cellulosilyticus DSM 2522] Length = 1098 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 122/233 (52%), Gaps = 4/233 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 +K K +FLA SHE+RTPL +IG +E + + G + ++ + I SG + Sbjct: 423 KKTDKLKDEFLAMTSHELRTPLHGMIGIAETMYDGATGKMTQSMK-KHLSMIISSGKRLS 481 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++ND+LD S +++ MNLH + V L E V I + Q NEK I I NI +L Sbjct: 482 HLINDILDFSILKNDAMNLHLKKVHLKELVDVVIIMSQSLLNEKNIRIINEIDTNIRPVL 541 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 D ++Q+ N++ NAI +T G +I + + + + + D+G+G++ +++ Sbjct: 542 GDENRLQQVFFNLIGNAIKYTERGTVVI--SAEEDGKMLQVHITDSGIGISADQIDTIFD 599 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 F + N+ + GTGLGL + K +++A+ G + S KG+ + PL+ Sbjct: 600 AFNRGGNNSE-EQSGTGLGLNITKKLIEAHGGNISVVSQEGKGSTFSFLIPLF 651 Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 69/253 (27%), Positives = 124/253 (49%), Gaps = 11/253 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ ++L A + K + ++ L+ +SHE TP+T + + I++ R G + Sbjct: 852 KEVNDELLKANEDLIKLQNARTHMLSNISHEFGTPVTFLQSY---IQSVRAGII-EANDA 907 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 Y ++ N++ ++ DL DISK+ESG + L + +L E +++ + ++I Sbjct: 908 HYLKSVENKVNMLNRLIEDLYDISKLESGDITLMTKERNLHEWINQMYDKFETDVTRRKI 967 Query: 685 -LIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 L + F N RI D + Q+ NI+ NAI T GG I I+ +EV++ Sbjct: 968 TLHKPVFTGNEEQDIRIDIDNDRMDQVFTNIIYNAIKHTNEGGDIWINVVVKDRQEVMIE 1027 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTPA 799 ++D G G+ +L + F + I G+ GTGLGL ++K ++ + G+ + ST Sbjct: 1028 IKDNGHGIKESDLPFVFERF--FKGEKVINGKIGTGLGLAISKEIIHHHNGEISVKSTEG 1085 Query: 800 KGTLIEIIFPLYD 812 G + I P+ D Sbjct: 1086 NGAIFCISLPIVD 1098 >gi|319956297|ref|YP_004167560.1| histidine kinase [Nitratifractor salsuginis DSM 16511] gi|319418701|gb|ADV45811.1| histidine kinase [Nitratifractor salsuginis DSM 16511] Length = 822 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/249 (33%), Positives = 125/249 (50%), Gaps = 15/249 (6%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 K ++ A + K FLA +SHEIRTPL I+GF ++++ PL N E+ Sbjct: 304 KADKERRSALDTARAKDLFLANMSHEIRTPLNGIVGFIQLLETT---PL-NEEQREFIRV 359 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRILI 686 + S +L+IVND+LD SKIE+GK+ L F+P+ E E + L+ K I Sbjct: 360 VQESSQNLLNIVNDILDFSKIEAGKVELEEIPFDPIDKWEMAVETYAAKALH---KGIDF 416 Query: 687 RTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRV 741 +P RIL D + Q+ +N+++NAI FT GG++ + E V V Sbjct: 417 AVYVDPALPGRILGDPTRISQVLVNLVNNAIKFTERGGEVSVFCQKMGELEGNVFVKFVV 476 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ + EK F Q ++ + GTGLGL ++ +V A GK + S P KG Sbjct: 477 SDTGIGIALDQQEKIFDLFTQADSTTSRKFGGTGLGLSISSKLVAAMGGKLAVESEPGKG 536 Query: 802 TLIEIIFPL 810 + PL Sbjct: 537 SSFFFTLPL 545 >gi|303243631|ref|ZP_07329972.1| integral membrane sensor signal transduction histidine kinase [Methanothermococcus okinawensis IH1] gi|302485873|gb|EFL48796.1| integral membrane sensor signal transduction histidine kinase [Methanothermococcus okinawensis IH1] Length = 650 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 131/230 (56%), Gaps = 12/230 (5%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL--GNPRYIEYANY-IDRSGNLVLDIV 641 KSD +A VSHE+RTPLT+I G+ E++ + G + + +E AN IDR L+ Sbjct: 428 KSDIVAIVSHELRTPLTSIKGYVELVLDGTMGAITESQKKCLEIANKNIDRLKRLI---- 483 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 +++LD+SKIE G++ +H E ++L E V + ++ A+EK I I + I + D Sbjct: 484 DNMLDLSKIEHGELEMHMEEINLKELVENVVDTLKPLADEKNINIIYKINDIIMK--GDK 541 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 + Q+ N++ NAI F+P G++ I N V +++ D G G+ +L++ F Sbjct: 542 DRITQVLTNLIENAIKFSPVNGKVEIQALKEGNS-VHIKIIDNGPGIPKKDLDRIFDRFY 600 Query: 762 QIPN-SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 Q+ + ++I+G G+GLGL + K++++ + G ++ S G++ II P+ Sbjct: 601 QVDSPEKRIKG-GSGLGLAVCKSIIETHGGTIWVESKLGSGSVFHIIIPI 649 >gi|262275800|ref|ZP_06053609.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP 101886] gi|262219608|gb|EEY70924.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP 101886] Length = 1085 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/274 (29%), Positives = 133/274 (48%), Gaps = 20/274 (7%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H IS Q + +L + K++AE S K+ FLA +SHEIRTP+ +IG +++ + Sbjct: 388 HIISR-NQAREQLLYQKELAESASKAKAQFLAAMSHEIRTPMNGVIGMIDILLRSKL--- 443 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + AN + S +L I+ND+LD S+IE+GKM + +SL + + + + Sbjct: 444 -DMSQMSIANTVRESALSLLSIINDILDFSRIEAGKMRIDNVTLSLRQIAEQVMDNLATE 502 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ---------IIIS 728 A EK + + + ++P L D +KQI NI+ N I F SGGQ I Sbjct: 503 AVEKNVSLTLFVSPDVPSSLCGDPTRIKQILFNIIGNGIKF--SGGQSHRGEVQVWITAD 560 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 N ++ + +RD G+G++ +LE +PF Q S R G+GLGL +++ + Sbjct: 561 IAKDGNAKISIEIRDNGIGISQDKLESIFRPFMQAEYSTTRRYGGSGLGLAISRNIASLM 620 Query: 789 MGKFYIFSTPAKGTLIEIIFPLY---DTSHPHDC 819 G S G+ + L + S P C Sbjct: 621 GGTITANSEEGIGSTFTVNLHLRVPEENSAPDAC 654 >gi|170737005|ref|YP_001778265.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3] gi|169819193|gb|ACA93775.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3] Length = 1194 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/257 (31%), Positives = 139/257 (54%), Gaps = 8/257 (3%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 +S D++ K + +L+ AK+ AE ++ KS FLA +SHEIRTP+ IIG E+++++ Sbjct: 571 WSGVWSDVTHAKAQAEELARAKEAAEIAAASKSRFLATMSHEIRTPMNGIIGMLELLRHE 630 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + + I S ++ I++D+LD SKI++G + + EP L V + Sbjct: 631 SL----STNQQRMLHMIGESAMTLMQILDDVLDFSKIDAGHLEILTEPTDLRALVDGVSA 686 Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIIST 729 + A++K +++R S ++ + L D ++QI +N++SNAI FT +G I + Sbjct: 687 IAATLAHDKGLVVRNSVSSQLSAELKVDGLRLRQILINLISNAIKFTENGEVGIDISVFD 746 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + + V V DTG+G+ +L+ PF Q +S R GTGLGL + K +V+ Sbjct: 747 QREACQRVHFTVHDTGIGIAPAQLQCLFAPFTQADSSIVRRFGGTGLGLAICKRLVELMH 806 Query: 790 GKFYIFSTPAKGTLIEI 806 G +I STP GT + + Sbjct: 807 GSVHIESTPGFGTRVTV 823 >gi|28898650|ref|NP_798255.1| hypothetical protein VP1876 [Vibrio parahaemolyticus RIMD 2210633] gi|260364916|ref|ZP_05777487.1| para-aminobenzoate synthase [Vibrio parahaemolyticus K5030] gi|260879684|ref|ZP_05892039.1| para-aminobenzoate synthase [Vibrio parahaemolyticus AN-5034] gi|260898843|ref|ZP_05907284.1| para-aminobenzoate synthase [Vibrio parahaemolyticus Peru-466] gi|28806868|dbj|BAC60139.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|308086698|gb|EFO36393.1| para-aminobenzoate synthase [Vibrio parahaemolyticus Peru-466] gi|308093405|gb|EFO43100.1| para-aminobenzoate synthase [Vibrio parahaemolyticus AN-5034] gi|308111679|gb|EFO49219.1| para-aminobenzoate synthase [Vibrio parahaemolyticus K5030] Length = 566 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 119/237 (50%), Gaps = 7/237 (2%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 +K AE+ +F+A ++HE+RTPL ++G ++++ + G + R +Y + +SG Sbjct: 195 RKRAEESEKATKEFVAMINHELRTPLNGVLGSADLLSKTQLGE--DQR--QYLGNLIQSG 250 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L+ I+NDLLD SK+ +G M + + + D+ + A EKRI I Sbjct: 251 DLLRVIINDLLDFSKMNAGMMEIIDKVFAWDDLEKAITGVFAAKAAEKRIHFSIDKKLGI 310 Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 P L DL + QI +N++ NAI FT GG ++ N V DTG+G+ Sbjct: 311 PEFLIGDLERITQILVNLIGNAIKFTHLGG--VVLRVEWVNGTAFFEVEDTGIGIPLAAQ 368 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 PF Q+ S + EG+GLGL + K +VD G+ S KGT ++ PL Sbjct: 369 SSLFDPFVQVDRSAKRSFEGSGLGLAICKNLVDLMQGEISFESEERKGTTFKVSIPL 425 >gi|332703674|ref|ZP_08423762.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553823|gb|EGJ50867.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1087 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 124/237 (52%), Gaps = 12/237 (5%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A++ AE + K++FLA +SHE+RTPL ++G E+ +P+ ++ Sbjct: 703 QAREEAEAANRAKTEFLANMSHELRTPLNGVLGMIELAGMS----CADPKTHDFLRMAKD 758 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG ++LDI+NDLLD++KIE+GK+ L + +L EA+ V + A K + Sbjct: 759 SGRMLLDIINDLLDLAKIEAGKVELEKKVFNLREALDNTFYPVCMVAERKGLRCSLVVDQ 818 Query: 693 NIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH------TSNEEVILRVRDTG 745 ++P ++ DL +Q+ N++ NA+ FT G++ +S T + ++ RV+DTG Sbjct: 819 SVPEHLVGDLGRFRQVVTNLVGNAVKFTEK-GEVNLSVMRIPHPFATDSVQIRFRVKDTG 877 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ F Q+ S + GTGLGL +++ +V+ G + S KG+ Sbjct: 878 IGIPQDMHNAIFDDFTQVGRSYSSKYGGTGLGLAISRNLVNLMGGDISVVSEEGKGS 934 >gi|315136851|dbj|BAJ44010.1| sensory histidine kinase AtoS [Escherichia coli DH1] Length = 590 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 188/398 (47%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 211 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 270 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 271 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 323 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 324 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 378 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q P+ + EY + + + + + ++ LL+ S+ Sbjct: 379 AHEVRNPLTAIRGYVQILRQQTSDPI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 434 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 435 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL 490 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 491 INAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFF------TTKAS 544 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 545 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 582 >gi|237717311|ref|ZP_04547792.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|229443294|gb|EEO49085.1| two-component system sensor histidine kinase [Bacteroides sp. D1] Length = 403 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/274 (30%), Positives = 141/274 (51%), Gaps = 25/274 (9%) Query: 548 LPFSSCYSLTM-HDISE-WK------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 P + Y L M DIS+ W+ Q++ +L A+ AE+ KS FLA +SHEIRTP Sbjct: 141 FPLDNKYLLCMCRDISQQWEAEQTNAQQQKELKAARVKAEESDRLKSAFLANMSHEIRTP 200 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 L AI+GFS++I N +YA I+R+ ++L++ ND+LD+S +E+ + + Sbjct: 201 LNAIVGFSKLITFATSTEEKN----QYAEIIERNSEMLLNLFNDILDLSSLEADSLKFNI 256 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA--DLRSVKQIALNILSNAIH 717 P+ L + + L Q + ++ + ++ + + A D + QI N+LSNA Sbjct: 257 RPIKLTDI---CLQLKQQFCHKTQNGVKLILDDVDADMYASGDWNRIIQIISNLLSNATK 313 Query: 718 FTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 FTP G I + E+ + V+D+G+G+ + + FG++ + Q GTGL Sbjct: 314 FTPKGE---IHFGYREKEDFVEFYVKDSGIGIPAERVATIFRRFGKVNDFVQ----GTGL 366 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GL L + +V+ G+ ++ S +G+ PL Sbjct: 367 GLTLCRMLVEKMGGRIWLRSQEGQGSRFYFTLPL 400 >gi|87309428|ref|ZP_01091563.1| two-component sensor histidine kinase [Blastopirellula marina DSM 3645] gi|87287736|gb|EAQ79635.1| two-component sensor histidine kinase [Blastopirellula marina DSM 3645] Length = 499 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 131/226 (57%), Gaps = 7/226 (3%) Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDL 644 ++F++ VSHE++TPL I + E++ + G + + E+ I+ + + ++++L Sbjct: 270 AEFVSAVSHEMKTPLAGIKAYVELLAD---GEAEDEQTRDEFLQVINSQADRLQRLIDNL 326 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 L++++IE+G +N++ +P SL+E + EA +V A +K I + + + +L D + Sbjct: 327 LNLARIEAGVVNVNKKPRSLNELLEEAFRIVHPTAEQKNITLISDLSPMYLGVLVDRDMI 386 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 Q A+N+LSNA+ +TP G++ + + + EV+ V DTGVG++ + ++ + F ++ Sbjct: 387 MQAAINLLSNALKYTPDNGKVTLR-SRLQDREVVFEVEDTGVGLSPEDCDRVFEKFYRVK 445 Query: 765 NSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLIEIIFP 809 Q++ GTGLGLPLAK +V D + G+ + S G+ I P Sbjct: 446 KDQKM-ASGTGLGLPLAKHIVEDVHGGELNVTSESGVGSTFRIRLP 490 >gi|254229567|ref|ZP_04922980.1| Signal transduction histidine kinase [Vibrio sp. Ex25] gi|262394235|ref|YP_003286089.1| signal transduction histidine kinase [Vibrio sp. Ex25] gi|151937940|gb|EDN56785.1| Signal transduction histidine kinase [Vibrio sp. Ex25] gi|262337829|gb|ACY51624.1| signal transduction histidine kinase [Vibrio sp. Ex25] Length = 573 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 132/242 (54%), Gaps = 7/242 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L+ A++ AE + KS+FLA +SHEIRTPL +++G +++K + I+ + Sbjct: 200 QLAKAREEAELANRSKSEFLAMMSHEIRTPLNSVLGMLDILKQSTL----SEEQIDALSQ 255 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR-T 688 ++ S L+L I++D+LD+SKIESG+ L+ + V+L + V+ IS + A +K + + Sbjct: 256 MECSAELLLAIISDILDLSKIESGRFQLNEQWVNLRDTVTFVISQQKQIAKKKSLQFKLN 315 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + D + QI N++ NAI FT G++ +S + + E+++ + DTG+G+ Sbjct: 316 CMVTTDKQFWIDSTRLSQILFNLIGNAIKFTDE-GEVKVSVSE-QDTELVISISDTGIGI 373 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + E F Q S R GTGLGL + K +V+ GK + S G+ I Sbjct: 374 SKAKQEHLFTAFHQGDRSITRRFGGTGLGLAITKHLVEMMRGKIIVKSDEHVGSTFTIKI 433 Query: 809 PL 810 P+ Sbjct: 434 PV 435 >gi|328473673|gb|EGF44508.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus 10329] Length = 576 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/257 (31%), Positives = 138/257 (53%), Gaps = 22/257 (8%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L+ A++ AE + KS+FLA +SHEIRTPL +++G +++ R L + ++ + N Sbjct: 200 QLARAREEAELANQSKSEFLAMMSHEIRTPLNSVLGMLDIL---RQSTLSDEQF-DALNQ 255 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 ++ S L+L I++D+LD+SKIESG L+ + + L++ V+ IS +K++ I + Sbjct: 256 MECSAELLLAIISDILDLSKIESGSFQLNEQWIHLNDTVTFVIS------QQKQVAITKN 309 Query: 690 FANNI-------PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + N + D + QI N++ NAI FT SG + + N+EV++ + Sbjct: 310 LSFNFDCQISSDKQYWIDSTRLSQILFNLIGNAIKFTDSGS--VSVSVAEENDEVVVSIS 367 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G++ + F Q S R GTGLGL + K +V+ G+ + S +G+ Sbjct: 368 DTGIGISRAKQAHLFTAFHQGDRSITRRFGGTGLGLAITKHLVEMMRGEISVKSRENEGS 427 Query: 803 LIEIIFPL---YDTSHP 816 I P+ Y+ S P Sbjct: 428 DFTIRIPVLTRYNQSRP 444 >gi|162450927|ref|YP_001613294.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161161509|emb|CAN92814.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 885 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 97/374 (25%), Positives = 176/374 (47%), Gaps = 27/374 (7%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT-----VFLEQNTPSVMNH 511 I+ A +GI + + G+I + N + ++ G P+ ++ + E +P + Sbjct: 363 IISALEEGITLQDERGVIRTANASAERILGLPMAQLVGSTMMGPSCRLVREDGSPFPLEM 422 Query: 512 YLTEILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKKLP---------FSSCYSLTMHDI 561 ++I +L + LG + + +L L + + L SS + +T Sbjct: 423 VPSQI-ALRTGAPQSGVLLGLERLDGSVLWLSVNAQPLRGEDGSVAGVVSSFFDITARKR 481 Query: 562 SEWKQEKNKLSHAKKIAEKES---SH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 +E +E+ L A + A +E+ SH K +FLA +SHE+RTPLTA++G+ ++ R G Sbjct: 482 AE--EERQGLLAAAESARQEAEAASHLKDEFLATMSHELRTPLTAVLGW---VRMLRTGK 536 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 L R + ++R+ +++DLLDIS+I +GK+ L + L + A+ +V+ Sbjct: 537 LPEERRDKALETVERNAQAQAQLIDDLLDISRIMAGKLRLDVHRIELVPVIDAALEVVRP 596 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A+ K + + + + + D ++Q+ N+L+NA+ FTP GG + I Sbjct: 597 AADAKGVRLLSLLEPGVGAVAGDAGRLQQVVWNLLNNAVKFTPRGGVVRIRLDRADGSAE 656 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS- 796 I V DTG G+ L + F Q + R G GLGL + K++V+ + G + S Sbjct: 657 IT-VSDTGQGIEPAFLPYVFEQFRQAESGTTRRHGGLGLGLTIVKSLVEMHGGTAHALSD 715 Query: 797 TPAKGTLIEIIFPL 810 +G + PL Sbjct: 716 GEGRGATFVVQLPL 729 >gi|84387569|ref|ZP_00990587.1| Signal transduction histidine kinase [Vibrio splendidus 12B01] gi|84377617|gb|EAP94482.1| Signal transduction histidine kinase [Vibrio splendidus 12B01] Length = 856 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 140/259 (54%), Gaps = 19/259 (7%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI++ + + + A++ AE ++ ++DFLA++SHEIRTPL I+G S+++K + Sbjct: 453 QDITKLIEAERQADRAREEAEHLANVRADFLAKMSHEIRTPLNGILGVSQLLKR----SI 508 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + E + + S +L ++ND+LD SKIE G+ N+ + L E V+ S+ + Sbjct: 509 HSEDNREQVDVLCNSAEHLLAVLNDILDFSKIEQGQFNIQKKDFRLGELVNTLDSIYRPL 568 Query: 679 ANEKRIL--IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-------QIIIST 729 +K I I A++I I D + QI N++SNA+ FT GG + I ++ Sbjct: 569 CGDKSIAFTIVNHLADDI-EINTDQVRLNQIMFNLVSNALKFTHQGGISVSFELESIFNS 627 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 H S +I+RV+D+G+G+ +++ +PF Q + GTGLGL + K +VD Sbjct: 628 DHAS---LIVRVKDSGIGIDESKIDAVFEPFVQAEETTTREYGGTGLGLTIVKNLVDMLE 684 Query: 790 GKFYIFSTPAKGT--LIEI 806 G + S +G+ +IEI Sbjct: 685 GDIQVRSEINQGSEFIIEI 703 >gi|322419402|ref|YP_004198625.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320125789|gb|ADW13349.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 771 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 89/272 (32%), Positives = 139/272 (51%), Gaps = 29/272 (10%) Query: 560 DISEWKQEKNKLSHAK---------KIAEKESSH---------KSDFLARVSHEIRTPLT 601 DI+E K+ + +L+ K + AE E ++ KS F+A SHE+RTPL Sbjct: 488 DITERKKAEEELNRYKTHLETLVQERTAELERANVRLQELDRLKSMFIAATSHELRTPLN 547 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 AIIGF+ + G L + A + RS +L ++ D++DISKIE+GK+++ E Sbjct: 548 AIIGFTGMTLQGLSGELNEEQQDNLAR-VYRSAKHLLALITDIIDISKIEAGKISIFPEE 606 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL---ADLRSVKQIALNILSNAIHF 718 L+E V EAI++V K + S +P L AD + + Q +N+LSNA F Sbjct: 607 FPLEELVDEAIAIVTPQLKGKSL----SLERELPAALTVYADRKRLLQCLVNLLSNAAKF 662 Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 T G II S + L V+D+G+G+ +L + KPF ++ + +++ GTGLGL Sbjct: 663 TEKGR--IIVAARESEGSIELSVKDSGIGIAPQDLPRLFKPFERLESHLRVQAGGTGLGL 720 Query: 779 PL-AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L AK + D G + S +G+ + P Sbjct: 721 YLTAKLVADVLRGTISVQSREGEGSTFTLSLP 752 >gi|110598781|ref|ZP_01387041.1| PAS:Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] gi|110339608|gb|EAT58123.1| PAS:Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] Length = 932 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 130/254 (51%), Gaps = 9/254 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K+ L +K+ AE+ K+ FLA +SHEIRTP+ I+GF+E++K L Sbjct: 542 DITEKKKLWVDLIASKEKAEESDRLKTAFLANISHEIRTPMNGILGFAELLKEPH---LS 598 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 EY I++SG +L ++ND++DIS+IE+G+ +H EP +++ + + + A Sbjct: 599 GEEQAEYIELINQSGKRMLALINDIVDISRIEAGETMIHVEPTHVNKLLHSLCTFFRPLA 658 Query: 680 NEKRILIRT--SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 K +L+ ++ I D + QI N++ N + F+ G + + E++ Sbjct: 659 ANKNLLLSCNNGLSDEECVIETDSAKLTQILTNLVQNGLKFSVEGE---VRVGYIRKEDL 715 Query: 738 I-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + V D+G+G+ E + F Q+ NS EG+GLGL ++KA V+ G + S Sbjct: 716 LEFSVSDSGIGIPESMKESIFERFRQVDNSLTRHHEGSGLGLSISKAYVEMLGGTIRVES 775 Query: 797 TPAKGTLIEIIFPL 810 G+ P Sbjct: 776 GEGNGSTFIFTLPF 789 >gi|87311982|ref|ZP_01094091.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] gi|87285286|gb|EAQ77211.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] Length = 539 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 131/242 (54%), Gaps = 6/242 (2%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A+ A+ + KS FLA +SHE+R PLTAI+G +E+++ P R + I + Sbjct: 150 ARNRADAANRAKSHFLATMSHELRNPLTAILGMTELLQED---PKPEDRQ-QMLEMIAEN 205 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G + +++ND+LD++KIE+G++ + E ++ + + +L++ A ++ + +R Sbjct: 206 GRHLHELLNDILDLAKIEAGRITIELEEANVGDIAASLCNLLRYRAADEGLSLRLEIKTP 265 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--EVILRVRDTGVGMTNY 751 +P + D ++QI LN++ NAI F G ++ S+E +V++ V DTG+G+ Sbjct: 266 VPHMNTDPIRIRQILLNLIGNAIKFNNQGEILVTIDLEKSDETKQVVIDVIDTGIGIPPD 325 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 L +PF Q+ + R G GLGLP+++ + G+ + S G+ +I P+ Sbjct: 326 RLTTIFEPFVQVAEDIRRRQPGVGLGLPISREIAILLGGELTVESEFGVGSRFRLILPVN 385 Query: 812 DT 813 +T Sbjct: 386 ET 387 >gi|294497707|ref|YP_003561407.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium QM B1551] gi|294347644|gb|ADE67973.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium QM B1551] Length = 957 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 94/381 (24%), Positives = 173/381 (45%), Gaps = 46/381 (12%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL----RKPFTVFLEQNTPSVMNHY 512 IL + +G+ +++ G IL N +S+LF Y + L R + L Q ++ Sbjct: 465 ILNSIQEGMQLVDTSGTILQVNTKISELFQYEHQSGLLQLSRDQWLDALSQKVENIQQ-- 522 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK-- 570 LRQ +E I G E+ + K YS ++ +N+ Sbjct: 523 --------LRQYVEAICKGEQVEKSFVYYLYTEGKRKVIKVYSEYVY--------RNRQM 566 Query: 571 ----LSHAKKIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 H E E KS+F++ VSHE+RTPL +++GF+E++ N+ L R + Sbjct: 567 FGVLFVHRDITKEFEVDQMKSEFVSTVSHELRTPLASVLGFTELMLNK---TLKEERQKK 623 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y I + + ++ND LD+ ++E+GK + D+ + + L++ ++I Sbjct: 624 YLTTIYQEAQRLTSLINDFLDVQRMEAGKQ-------TYDKKYQDILPLIKQVIEVQKIQ 676 Query: 686 IRTSFANNIP-----RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + I ++ D + Q+ N++SNA+ ++P GG + + + V + Sbjct: 677 TSKHEFDMISDQEHFTVMGDKDKLLQLFNNVISNAVKYSPDGGNVTVKV-YQKEHAVYID 735 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 ++D G+G+ + L + F ++ NS + GTGLGL + K +V A+ G + S K Sbjct: 736 IQDEGIGIPSEALGQLFTKFYRVDNSDMRKIGGTGLGLAIVKEIVKAHGGDITVQSEWKK 795 Query: 801 GTLIEIIFP-LYDTSHPHDCI 820 GT ++ P LY+ + + I Sbjct: 796 GTTFTVVLPLLYEVQYDEEMI 816 >gi|37524900|ref|NP_928244.1| sensor protein BarA [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784326|emb|CAE13203.1| Sensor protein BarA [Photorhabdus luminescens subsp. laumondii TTO1] Length = 775 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/248 (32%), Positives = 134/248 (54%), Gaps = 10/248 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLG 619 + +++ + +L+ AKK A+ + K++FLA +SHE+RTPL +IGF+ + +K PL Sbjct: 268 MEQFEIQNVELAIAKKRAQDAARIKTEFLANMSHELRTPLNGVIGFTRQTLKT----PL- 322 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + EY I+RS N +L+I+ND+LD S++E+ K+ L P L + + E + L+ L A Sbjct: 323 TIQQTEYLYIIERSANHLLNIINDILDFSRLEADKLVLENVPFLLQDTIDEVMVLLTLSA 382 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV 737 K I + IP ++ D ++QI NI+ NAI FT G +I I+ + ++ Sbjct: 383 KSKNIQLTHHVDPQIPNLVVGDPTRLQQIFTNIIGNAIKFTDQGSVEIKINLLQQKHHKI 442 Query: 738 ILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 L V DTG+G++ + + F Q S GTGLGL + + ++ G Sbjct: 443 NLEITVSDTGIGISPEQQPHLFQAFHQANASISRHYGGTGLGLVITRKLIQEMGGNISFT 502 Query: 796 STPAKGTL 803 S P KG++ Sbjct: 503 SEPKKGSV 510 >gi|28898321|ref|NP_797926.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|153839423|ref|ZP_01992090.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus AQ3810] gi|260361910|ref|ZP_05774917.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus K5030] gi|260878657|ref|ZP_05891012.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus AN-5034] gi|260894876|ref|ZP_05903372.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus Peru-466] gi|28806538|dbj|BAC59810.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|149747047|gb|EDM58035.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus AQ3810] gi|308087860|gb|EFO37555.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus Peru-466] gi|308091142|gb|EFO40837.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus AN-5034] gi|308114538|gb|EFO52078.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus K5030] Length = 576 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/257 (31%), Positives = 138/257 (53%), Gaps = 22/257 (8%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L+ A++ AE + KS+FLA +SHEIRTPL +++G +++ R L + ++ + N Sbjct: 200 QLARAREEAELANQSKSEFLAMMSHEIRTPLNSVLGMLDIL---RQSTLSDEQF-DALNQ 255 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 ++ S L+L I++D+LD+SKIESG L+ + + L++ V+ IS +K++ I + Sbjct: 256 MECSAELLLAIISDILDLSKIESGSFQLNEQWIHLNDTVTFVIS------QQKQVAITKN 309 Query: 690 FANNI-------PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + N + D + QI N++ NAI FT SG + + N+EV++ + Sbjct: 310 LSFNFDCQISSDKQYWIDSTRLSQILFNLIGNAIKFTDSGS--VSVSVAEENDEVVVSIS 367 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G++ + F Q S R GTGLGL + K +V+ G+ + S +G+ Sbjct: 368 DTGIGISRAKQAHLFTAFHQGDRSITRRFGGTGLGLAITKHLVEMMRGEISVKSRENEGS 427 Query: 803 LIEIIFPL---YDTSHP 816 I P+ Y+ S P Sbjct: 428 DFTIRIPVLTRYNQSRP 444 >gi|239827569|ref|YP_002950193.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. WCH70] gi|239807862|gb|ACS24927.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. WCH70] Length = 597 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 102/369 (27%), Positives = 170/369 (46%), Gaps = 32/369 (8%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 QL SIL + +DG+ NR+G IL TN P E L+ + F + N M Sbjct: 259 QLASILSSMADGVITFNRDGEILITNP--------PAERFLQAWY--FEQGNGAETMAPL 308 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 ++ L +R +EEK S+ + ++ + + M + + ++ Sbjct: 309 PPQVKELFIR---------VVREEKEQSIELSLQ----GRTWVILMTPLYSKTTVRGAVA 355 Query: 573 HAKKIAEKESSHK--SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + + E+ K DF+A VSHE+RTP+ + G+SE I + + E A I Sbjct: 356 VLRDMTEERRLDKLRKDFVANVSHELRTPIAMLQGYSEAIIDDIAAT--DEEKKEMAKVI 413 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + +VNDLLD++++E+G + L +E V L + I Q A EK+I + F Sbjct: 414 YDESLRIGRLVNDLLDLARMEAGHITLDYETVQLVPYIERIIRKFQGLAKEKQIDLSAEF 473 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 N +I D ++Q+ N++ NAI T G + I S + V + V+D+G G+ Sbjct: 474 KNEDIQITMDPDRIEQVLTNLIDNAIRHTDKNGMVKI-IVERSGDGVTIHVQDSGSGIPE 532 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +L + F + ++ GTGLGL +AK +V+A+ G + S +GT F Sbjct: 533 EDLPFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGTISVHSKLHEGT----TFTF 588 Query: 811 YDTSHPHDC 819 Y + PH+ Sbjct: 589 YLPNGPHET 597 >gi|120437377|ref|YP_863063.1| two-component system sensor histidine kinase/response regulator hybrid [Gramella forsetii KT0803] gi|117579527|emb|CAL67996.1| two-component system sensor histidine kinase/response regulator hybrid [Gramella forsetii KT0803] Length = 813 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/262 (30%), Positives = 141/262 (53%), Gaps = 14/262 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++ ++ + +L AK+ AE + + F+A ++H++R+PLT ++G++++I+ Sbjct: 291 DVTRSQRYRVQLEEAKEFAESLLASREQFMAAITHDLRSPLTTVMGYTDLIQKTDL---- 346 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM---NLHFEPVSL-DEAVSEAISLV 675 N + Y I +S +L +VNDLLD+SK+E+GKM L F P +L + V+ I Sbjct: 347 NEKQKHYLTQIKKSSEFILRLVNDLLDLSKLEAGKMLVEKLSFNPKNLIKDTVNNIIPAE 406 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHT 732 + + +I I S N+ +I +D +KQI N++SNA FT G +I + + T Sbjct: 407 K--KKDVKIQIEVSKETNV-QIQSDPFRIKQILANLISNAWKFTEKGSILIAAKLQESST 463 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 N + +RV+D+G+G++ + F Q +S + R G+GLGL + K + + GK Sbjct: 464 ENHILEIRVKDSGIGISKEMQASIFEEFSQENSSIEKRFGGSGLGLAITKRLTELLEGKI 523 Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814 + S KG+ I P+ S Sbjct: 524 KVNSEQGKGSEFIITIPVLKLS 545 >gi|302187737|ref|ZP_07264410.1| response regulator receiver [Pseudomonas syringae pv. syringae 642] Length = 1172 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 126/232 (54%), Gaps = 3/232 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ S +KS+FLA +SHE+RTPL + + ++++ + G +++A I +GN +L Sbjct: 488 QRASKYKSEFLANMSHELRTPLNSSLILAKLLA-ENPGENLTAEQVKFAESIYSAGNDLL 546 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++ND+LDISK+E+GK+ + E S+ V +L Q A EK++ P +L Sbjct: 547 NLINDILDISKVEAGKLEVRPENSSVPRLVEGLRTLFQPLAAEKKLAFTVDIQAGAPTML 606 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + ++QI N+LSNAI FT +G + + + + VRD+G+G+ + Sbjct: 607 FTDRQRLEQILKNLLSNAIKFTEAGS-VSMVVSRQPGAGIAFIVRDSGIGIAEEHQQGIF 665 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q + R GTGLGL +++ + G + S P +G++ ++ P Sbjct: 666 EAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLP 717 >gi|94499024|ref|ZP_01305562.1| sensory box histidine kinase/response regulator [Oceanobacter sp. RED65] gi|94428656|gb|EAT13628.1| sensory box histidine kinase/response regulator [Oceanobacter sp. RED65] Length = 553 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/244 (32%), Positives = 128/244 (52%), Gaps = 15/244 (6%) Query: 577 IAEKES-------SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +AE+ES KS FLA +SHEIRTPL I+G ++++ + N +E+ Sbjct: 174 LAEQESMTAAAANEAKSQFLAHMSHEIRTPLNGILGLTDILAQTQL----NENQLEFIKT 229 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG +L I+ND+LD SKIE+GK+ L SL + L +K + + Sbjct: 230 IRHSGEALLAIINDILDFSKIEAGKLELESIDFSLPTLCDDLEGLFISQVQDKGLQFDIN 289 Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEEVILRVRDTGVG 747 NIP L D +KQ+ LN++SN++ FT G ++ I + + + +V D+G+G Sbjct: 290 LDPNIPEFLNGDPLRIKQVLLNLISNSLKFTHEGYVKLDIRQSQATPLVLEFKVSDSGIG 349 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 ++ + ++ KPF Q+ +S + GTGLGL +++ +V G + S KG+ I Sbjct: 350 ISEEKQDQLFKPFTQVDSSTTRKYGGTGLGLQISQRLVQLMGGNIRLHSQVDKGS--TFI 407 Query: 808 FPLY 811 F L+ Sbjct: 408 FDLH 411 >gi|218264472|ref|ZP_03478305.1| hypothetical protein PRABACTJOHN_04005 [Parabacteroides johnsonii DSM 18315] gi|218221965|gb|EEC94615.1| hypothetical protein PRABACTJOHN_04005 [Parabacteroides johnsonii DSM 18315] Length = 620 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 129/245 (52%), Gaps = 7/245 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 KQ + +L K+ AE+ + KS FLA +SHEIRTPL AI+GF+ ++++++ L + Sbjct: 379 KQVQLRLIEEKERAEEANKMKSAFLANMSHEIRTPLNAIVGFTNLLQDEK--DLTDEEKD 436 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + N I+++ NL+L ++ND+L++S+IESG+M+ F+ +L+E + E L I Sbjct: 437 LFRNTINKNSNLLLKLINDILELSRIESGRMSFTFDDCALNELLEEIYQTHHLLM-PSNI 495 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 F + I D Q+ N ++NA+ FT G ++ +E + V DT Sbjct: 496 RFLKEFQESELIIHVDRFRFTQVITNFINNAVKFTTKGHILLGYVYKKEEKEAHIFVEDT 555 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G GM+ +K + F + Q GTGLGL + + + + G+ + S KG+ Sbjct: 556 GKGMSEEAQKKVFERFFKADEFAQ----GTGLGLSICQTIAERLDGRITLASQEGKGSCF 611 Query: 805 EIIFP 809 +I P Sbjct: 612 TLIIP 616 >gi|298482247|ref|ZP_07000434.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298271534|gb|EFI13108.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 391 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/264 (31%), Positives = 130/264 (49%), Gaps = 12/264 (4%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +T+HD++ KQ +N+L AK+ AEK KS FLA +SHEIRTPL AI GF+EV+ + Sbjct: 138 ITVHDVTRRKQAENELRLAKEKAEKADISKSAFLANMSHEIRTPLNAITGFAEVLGSAN- 196 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 +Y I + +L++ +VND+LD+SKIE+G + V ++ +S+ L Sbjct: 197 ---TEEEKAQYQEIIKMNADLLMQLVNDILDMSKIEAGTLEFVQTTVDVNLLLSDLQQLF 253 Query: 676 QLYANE--KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 Q+ NE + I I + + I D V Q+ N NAI FT G I Sbjct: 254 QMRVNEAGENIQIIAEPSRSSCMIQTDRNRVAQVLSNFAGNAIKFTHEGS--IRIGYEAR 311 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + E+ V+DTG G+ +L + F ++ ++ G GLGL +++ +V G+ Sbjct: 312 DTELYFYVKDTGAGIPAEKLPDVFERFVKLNKDKK----GAGLGLSISQTIVAKLGGQIG 367 Query: 794 IFSTPAKGTLIEIIFPLYDTSHPH 817 S +G+ P P Sbjct: 368 ADSVEGEGSTFWFTIPYRTCGKPR 391 >gi|189461736|ref|ZP_03010521.1| hypothetical protein BACCOP_02402 [Bacteroides coprocola DSM 17136] gi|189431496|gb|EDV00481.1| hypothetical protein BACCOP_02402 [Bacteroides coprocola DSM 17136] Length = 834 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/261 (31%), Positives = 139/261 (53%), Gaps = 15/261 (5%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 +++ DI+ + +L AK AE + + ++H+I+ P +IIG+ +++ Sbjct: 303 FTIIWRDITRSNHYRKELEKAKLYAENLLVAREKLMLTITHDIKAPAGSIIGYIDLL--- 359 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD-EAVSEAI 672 + + R Y + + S N +LD++ LLD ++E+GKM++H PV+ + + E+I Sbjct: 360 -IRLVQDRRQQFYLHNMKSSANHLLDLITSLLDYHRLEAGKMDIH--PVTFNPHELFESI 416 Query: 673 SLVQLYANEKRILIRTSFANNIPRIL---ADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 L EK+ L +F NIPR L D ++QIA N++SNA+ FT S G I I Sbjct: 417 YTSFLPGAEKKQLT-LNFEENIPRTLNLEGDPFRIRQIAENLISNALKFT-SQGSITIQV 474 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + N RV DTG GM+ E ++ + F ++ ++Q EG GLGL + K +V+ Sbjct: 475 DYEQN-RFTFRVEDTGCGMSIQEQQRVFQAFTRLQSAQG--QEGFGLGLSITKKLVELLN 531 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G+ I S P KG++ +++ L Sbjct: 532 GEITIESAPGKGSMFQVVLFL 552 >gi|160937915|ref|ZP_02085273.1| hypothetical protein CLOBOL_02809 [Clostridium bolteae ATCC BAA-613] gi|158439141|gb|EDP16895.1| hypothetical protein CLOBOL_02809 [Clostridium bolteae ATCC BAA-613] Length = 960 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 90/293 (30%), Positives = 149/293 (50%), Gaps = 16/293 (5%) Query: 530 LGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDI-----SEWKQEKNKLSHAKKIAEKESS 583 +G + LS++II + PF+ ++ + + +E +++ L A A+ + Sbjct: 389 MGMDGKYHWLSVQIIYVENPFNDDVLAIELVKVLDSQRAEQARQEQLLRDALASAKAANQ 448 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA-NYIDRSGNLVLDIVN 642 KSDFL+R+SH+IRTP+ AI+G S + + + L + R ++ ID S +L ++N Sbjct: 449 AKSDFLSRMSHDIRTPMNAIVGMSTIGQLK----LDDRRSVQDCFCKIDASSRYLLSLIN 504 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADL 701 D+LD+SKIE+GKM L E E + E ++ A E++I + + + + D Sbjct: 505 DILDMSKIETGKMELAHEYFDFTELMDEVNQIIYPQAEERQIEYVIYHSEPLEQFYIGDP 564 Query: 702 RSVKQIALNILSNAIHFTPSGG--QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAM 757 +KQI +N+LSNA+ FT +GG QI I +N LR V+DTG+GM+ + Sbjct: 565 LRLKQILMNLLSNALKFTRAGGRIQIQIEEQKRTNGFSYLRFQVKDTGIGMSREFRSRLF 624 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 PF Q G+GLGL + +V G + S KG++ + P Sbjct: 625 MPFEQEAPETARNNIGSGLGLSIVYNLVQLMGGSIEVESEKEKGSVFTVTLPF 677 >gi|226314663|ref|YP_002774559.1| two-component hybrid sensor and regulator [Brevibacillus brevis NBRC 100599] gi|226097613|dbj|BAH46055.1| two-component hybrid sensor and regulator [Brevibacillus brevis NBRC 100599] Length = 962 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 121/226 (53%), Gaps = 6/226 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+F++ VSHE+RTPL +++GF+E++ ++ P RYI I + + ++ND Sbjct: 588 KSEFVSTVSHELRTPLASVLGFAELLLTKKLKPERQQRYIA---TIYQEATRLTALINDF 644 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+ ++ESG+ E V++D+ + + L ++ + R + + + D + Sbjct: 645 LDLQRMESGRQTYELENVAIDQVIRDIFELHRVQSPLHRFELDLQTEKTV--VSGDQAKL 702 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 Q+ LN++SNA+ ++P GG + + N +++ V+D G+G+ + + F ++ Sbjct: 703 HQVFLNLISNAVKYSPHGGHVRVGCRQDGN-RLLVEVQDEGLGIPSEAIPHLFTKFYRVD 761 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 NS + GTGLGL + + +V + G+ + S KG+ + PL Sbjct: 762 NSDRREIGGTGLGLAIVQEIVHMHHGEVSVISESGKGSTFTVTLPL 807 >gi|172065661|ref|YP_001816373.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] gi|171997903|gb|ACB68820.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] Length = 770 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 93/355 (26%), Positives = 163/355 (45%), Gaps = 24/355 (6%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++++A+ D I I+REG I+S N A ++FGY D +P + + + L + Sbjct: 257 AVVDASPDAIVGIDREGRIVSWNPAAQRIFGYDEADARGRPLETLVAMRW--LRRNPLAD 314 Query: 516 ILSLD-LRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLTMHDISEWKQEKNK 570 S D +R+ + + L + + R + P SC +L++ Q + Sbjct: 315 --SFDAMREAVGPLELLCVRRDGR-RFRATVSAGPVHGGARSCVALSLTLRETGAQRRRD 371 Query: 571 LS---------HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 L A+ A+ + K + LA VSHE+RTPL I G+ EV++N R L Sbjct: 372 LRTQRSLQGARDARDRADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNTRDDALEQ- 430 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + + IDRS + +V D+LD S + +GK+ + PV + S+ + Q A+ Sbjct: 431 ---QAIDAIDRSARSLTRMVGDILDASSLATGKLRIDPMPVDVVRLFSDTVGAFQTAASS 487 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 I++ A + + D ++Q+ N++SNA+ FTP GG + + T + +L V Sbjct: 488 AGIVLEFECAASACVVSGDAERLRQMLANLVSNALKFTPGGGAVTV-TLSRDDAHAVLVV 546 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 DTG G+ + F + +S G GLGL + + + + G+ + S Sbjct: 547 ADTGQGIPPAFIPHVFDMFRRADDSPASPRRGLGLGLSIVRHIAGLHGGQVRVES 601 >gi|170692987|ref|ZP_02884148.1| integral membrane sensor hybrid histidine kinase [Burkholderia graminis C4D1M] gi|170141985|gb|EDT10152.1| integral membrane sensor hybrid histidine kinase [Burkholderia graminis C4D1M] Length = 720 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 129/221 (58%), Gaps = 8/221 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +FLA +SHE+RTPL AI+G++++++ R L + + E I RSG +L ++ D Sbjct: 263 KGEFLANMSHELRTPLNAILGYAQILR--RDASL-SEHHREGVGVIQRSGEHLLALIGDA 319 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703 LD +++E+G++ + V L + ++++ +K + A ++P + AD R Sbjct: 320 LDFARVEAGRLRIEMNDVPLAGTLDAIREIIEVKIAQKHVEFIWRVAPDVPDAVRADERR 379 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 ++Q+ LN+L NA ++T G + + ++ +V VRDTG+GM +L+ +PF QI Sbjct: 380 LRQVLLNLLVNAFNYTDQ-GSVSLLIEMSAAGKVCFEVRDTGIGMDADQLQTIFEPFEQI 438 Query: 764 PNSQQIRG-EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +++ RG GTGLGL +++ ++ A + ++ S P +G+L Sbjct: 439 MHTE--RGASGTGLGLTISQQLLRAMGSEIHVQSQPGRGSL 477 >gi|310640534|ref|YP_003945292.1| sensor protein [Paenibacillus polymyxa SC2] gi|309245484|gb|ADO55051.1| Sensor protein [Paenibacillus polymyxa SC2] Length = 891 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 103/364 (28%), Positives = 173/364 (47%), Gaps = 31/364 (8%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 IL A S+GI +N EG + N A ++FG + L + + ++ + +H+ E Sbjct: 511 ILNAVSEGIVGLNTEGHVRFMNPAAVEMFGIGSANPLNGS-CIDVIRHADEIGSHFPDEQ 569 Query: 517 LSLDLRQTLEKITLGST--KEEKLLSLRIIIKKLPFSSCYSLT-MHDISEWK-------- 565 S+ L+ I G++ EE + + F + Y ++ + D E K Sbjct: 570 ASI-----LQAIRSGASYQAEEAVFWKK---DGSSFLASYRISPLMDNGERKGAVMVFVD 621 Query: 566 -QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + ++ AK+ AE+ KS+FL+ +SHE+RTP+ IIG + ++ + + Sbjct: 622 RTNEKEIIRAKESAERADRAKSEFLSVMSHELRTPMNGIIGMAGLLADTEL----DEEQR 677 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 Y + I S N ++ I+N++LD+SKIE+GKM+L E L++ V L A EK I Sbjct: 678 SYIDIITSSSNALMQILNEILDLSKIEAGKMSLLHESFVLEDVVGSVADLFMTQAMEKGI 737 Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE----VI 738 + +P +L D ++QI +N++SNAI FT G I + S + + Sbjct: 738 QLEWHVDQEMPGMLVGDHVRIRQILVNLVSNAIKFTERGHVNIFVERKAYSRRKKKCLIE 797 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG+G+ +PF Q+ + + GTGLGL + K +V G + S Sbjct: 798 FSVTDTGIGIPADRQHLLFQPFSQLHPALNRKYGGTGLGLSICKNLVKLMGGSIGVDSDE 857 Query: 799 AKGT 802 A+G Sbjct: 858 ARGA 861 >gi|293605362|ref|ZP_06687745.1| sensor histidine kinase/response regulator [Achromobacter piechaudii ATCC 43553] gi|292816234|gb|EFF75332.1| sensor histidine kinase/response regulator [Achromobacter piechaudii ATCC 43553] Length = 1116 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 134/244 (54%), Gaps = 3/244 (1%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 ++ L+ + + S KS+FLA +SHE+RTPL + + ++++ + + G L + ++YA Sbjct: 425 QDALTEKARQLTQASQFKSEFLANMSHELRTPLNSTLILAKLLSDNKPGNLSTEQ-VKYA 483 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I +G+ +L ++ND+LD++KIE+G+ + E V++ + + ++ A EK +++ Sbjct: 484 QTIYAAGSDLLALINDILDLAKIEAGQATVEVEQVTIASTLQRLLEPMRPMAVEKGLVLE 543 Query: 688 TSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 +P + D + + Q+ N+LSNA+ FT G + + + + + V V DTG+ Sbjct: 544 LDIDAAVPATMQTDAKRLGQVLKNLLSNALKFTERGS-VAMRVSRSGRDRVRFAVHDTGI 602 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ + E + F Q S + GTGLGL +++ + + GK + ST +G++ + Sbjct: 603 GVPAEQQELIFEAFRQADGSTHRKYGGTGLGLSISRDLAELLGGKLTVTSTAGQGSVFTL 662 Query: 807 IFPL 810 PL Sbjct: 663 EVPL 666 >gi|291549132|emb|CBL25394.1| diguanylate cyclase (GGDEF) domain [Ruminococcus torques L2-14] Length = 1059 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 131/253 (51%), Gaps = 13/253 (5%) Query: 560 DISEWKQ----EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 DISE+ + E+ +L A + A+ ES K++F+ R+SH+IRTP+ I+G ++I R Sbjct: 644 DISEFHEQEDRERERLQVAYEKADLESRAKTEFMNRMSHDIRTPINGILGMIQMI---RK 700 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + E + +D S + ++VND+LD+SKIESG + L + L+ + + +V Sbjct: 701 NYKDQEKIEECVDKMDLSVQHLSELVNDVLDMSKIESGYLELQNDTFDLNTLIDQVEVVV 760 Query: 676 QLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 I + N + D +++I LN+ SNAI + GG+I S Sbjct: 761 SAQVEAMEISYESHREKVNHTMLSGDTLQIRRIMLNLFSNAIKYNKRGGRIDTYVKELSF 820 Query: 735 EEVI----LRVRDTGVGMTN-YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + + R+ DTGVGM+ Y E+ KPF Q N + + +GTGLG+ + K +V+ Sbjct: 821 DGMCAAFEFRITDTGVGMSREYIKEELFKPFTQEINDARTQYKGTGLGMSIVKGLVEKMG 880 Query: 790 GKFYIFSTPAKGT 802 G + STP GT Sbjct: 881 GTIRVSSTPGVGT 893 >gi|160940248|ref|ZP_02087593.1| hypothetical protein CLOBOL_05137 [Clostridium bolteae ATCC BAA-613] gi|158436828|gb|EDP14595.1| hypothetical protein CLOBOL_05137 [Clostridium bolteae ATCC BAA-613] Length = 1118 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 88/283 (31%), Positives = 146/283 (51%), Gaps = 13/283 (4%) Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 ++ + ++KE + + I ++ + L +D E K+ K+ L A + + KS Sbjct: 671 EVHMVASKEGRPRTAIIALRNISAEKQRELEYYD--EEKKAKHALEEAYDSLNRANQAKS 728 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA-NYIDRSGNLVLDIVNDLL 645 DFL+R+SH+IRTP+ AI+G + + ++ L N IE + I SG+ +LD++N +L Sbjct: 729 DFLSRMSHDIRTPMNAIMGMTAIAQSN----LNNRDKIEDCLSKISLSGSHLLDLINKVL 784 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSV 704 D+SKIESG + L + L+E V E +V+ + K + S + + D V Sbjct: 785 DMSKIESGNVGLSEDAFCLEELVEEVSLIVKPDMDSKGQELSISLKEIDHHAVYGDAVRV 844 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR-----VRDTGVGMTNYELEKAMKP 759 KQI +N+LSNA+ +T G I +S + E + V D G+GM LEK P Sbjct: 845 KQILINLLSNAVKYTSDRGHIAVSLEEKLSSESGVGCFEFVVEDDGIGMAPEFLEKLFMP 904 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 F + +S+ + +GTGLGL + + +V G + S +GT Sbjct: 905 FERAEDSRVSQVQGTGLGLAITRNLVQMMNGTIRVESQLNRGT 947 >gi|158339630|ref|YP_001521019.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] gi|158309871|gb|ABW31487.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] Length = 914 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 134/243 (55%), Gaps = 9/243 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q +L AK+ AE + KS F+A +SHE+RTPL I+G+++V++ P + + Sbjct: 433 QQRTAELKVAKEKAEVANQAKSLFIANMSHELRTPLNGILGYAQVLER---SPTISDKAQ 489 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + + I + G +L ++ND+LD+SKIE+GK++L +PV L + ++ A +K + Sbjct: 490 QQVHIIHKCGTHLLGMINDILDLSKIEAGKLDLMPKPVHLTSCLQGVAEACRVRAAQKGL 549 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIIS-TTHTSNEEVIL 739 + +P + D + ++Q+ N+LSNAI FT G Q+ ++ T + + Sbjct: 550 EFVYAVDPGLPEGVELDEQRLRQVLFNLLSNAIKFTQQGTVTLQVSVAEVTRSDYRRLRF 609 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTGVG+ L++ F Q+ + Q+ + EGTGLGL +++ +V + + S Sbjct: 610 GVTDTGVGIAPAHLDQLFNAFVQVGDRQK-QAEGTGLGLAISRRLVQLMGSQIEVQSAVG 668 Query: 800 KGT 802 +G+ Sbjct: 669 QGS 671 >gi|325110166|ref|YP_004271234.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324970434|gb|ADY61212.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 1273 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 110/379 (29%), Positives = 177/379 (46%), Gaps = 43/379 (11%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYL- 513 SI E S+GI G +L N ++ ++ GY VED+L Q+ PS+ Y+ Sbjct: 475 SIFENASEGIFRTTANGRLLEANPSLLEMLGYESVEDLL---------QSIPSLDRMYVK 525 Query: 514 ----TEILSLDLRQTLEKITLGST---KEEKLLSLRIIIKKLPFSSCYSLTMH------- 559 T ++ DLR + ++ K+ +++ I + + S +T Sbjct: 526 PQDRTRLIE-DLRTNGKVKQFAASLYRKDGRIIDTSINARLIAPDSYDDVTQEIIEGSLI 584 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG----FSEVIKNQRF 615 D++E + E L K++AE + KS FLA +SHEIRTPL +IG E +Q+ Sbjct: 585 DVTE-RNEAEVLRQQKEMAEAANKAKSSFLATMSHEIRTPLNGVIGMLDLLCETDTDQQQ 643 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G RY+ A S +L ++ND+LD SKIE+GK+ L +L V + + Sbjct: 644 G-----RYVSIAK---NSAESLLCLINDILDFSKIEAGKLELSPSEFNLPTLVEDVSDMF 695 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS 733 A K + + + R+L D ++QI +N++ NAI FT G +I ++ T T Sbjct: 696 AHRAASKGLELSCHILPEVASRVLGDSERLRQILINLIGNAIKFTEVGEIRINVAATSTR 755 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + E +R V+DTGVG+ ++ +PF Q S + GTGLGL + + + GK Sbjct: 756 DHEQWVRFEVQDTGVGIPEDIQQRLFQPFEQADASTTRKFGGTGLGLAICRELAILMGGK 815 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + S G + P Sbjct: 816 ITVDSQLGSGATFSLEIPF 834 >gi|149190144|ref|ZP_01868420.1| sensory box sensor histidine kinase/response regulator [Vibrio shilonii AK1] gi|148836033|gb|EDL52994.1| sensory box sensor histidine kinase/response regulator [Vibrio shilonii AK1] Length = 1128 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 121/227 (53%), Gaps = 5/227 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG-NPRYIEYANYIDRSGNLVLDIVND 643 K +FLA SHE+RTPL +IG +E + + GP+G N +Y + I SG + +V+D Sbjct: 459 KDEFLATTSHELRTPLHGMIGIAEAMISGANGPIGANHKY--QLDIIVNSGQRLAGLVDD 516 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 LLD K+ G +++ +SL A + L EK+I I +P + AD + Sbjct: 517 LLDYHKMRYGNLDIERSAISLTGATQLVLELSHHLLGEKKIRIINQVLEPLPYVSADPQR 576 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 ++Q+ N++ NAI +T + G+I++S T ++ + ++V DTG G+ +LE +P Q Sbjct: 577 LEQVLYNLVGNAIKYT-NEGKIVLSAT-AMDDHIRVQVVDTGQGIPAQQLEHIFEPLVQA 634 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + +G GLGL +++ +++ G Y+ S P GT PL Sbjct: 635 GHDSGHYRQGAGLGLSISRQLIELMGGSLYVSSQPHVGTTFSFTLPL 681 >gi|221133435|ref|ZP_03559740.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola sp. HTCC2999] Length = 1029 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/219 (31%), Positives = 121/219 (55%), Gaps = 6/219 (2%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q + ++ A + + KSDFLA +SHEIRTP+ IIG +E+++ + E Sbjct: 511 QNITSIKETEQRANEANQSKSDFLANMSHEIRTPINGIIGMNELLQKTSL----TTQQTE 566 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y I RS +L ++ND+LD SKIE+GK+NL+ + V++DE + +Q ++ K + Sbjct: 567 YTQAIQRSSQALLGLINDILDFSKIEAGKLNLNVKKVAMDEFMENIYKEIQPLSDAKNLQ 626 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + + I++D ++QI +N+ SNAI FT G I IS + + + + DTG Sbjct: 627 LDIQVC-PLVTIMSDPMRLRQILINLCSNAIKFTEYGS-IRISFSVIDEQYLRFTISDTG 684 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 +G+ + + + + F Q+ S + GTGLGL +++ + Sbjct: 685 IGIPSEKSSQLFEKFNQLDTSSKRSIGGTGLGLTISQQL 723 >gi|323171897|gb|EFZ57541.1| signal transduction histidine-protein kinase atoS [Escherichia coli LT-68] Length = 605 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 188/398 (47%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 226 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 285 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 286 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 338 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 339 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 393 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q P+ + EY + + + + + ++ LL+ S+ Sbjct: 394 AHEVRNPLTAIRGYVQILRQQTSDPI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 449 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 450 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL 505 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 506 INAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFF------TTKAS 559 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 560 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 597 >gi|237722197|ref|ZP_04552678.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229448007|gb|EEO53798.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1409 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 72/253 (28%), Positives = 133/253 (52%), Gaps = 12/253 (4%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 ++K +L + ++ + K F ++HE RTP+T IIG E + NP+ IE Sbjct: 873 RQKAQLIRMSRKVQELTLDKISFFTNITHEFRTPITLIIGPIERALKLSY----NPQVIE 928 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 ++++R+ +L +VN L+D K+ESGK+ + + + + I+ +++A E+ I+ Sbjct: 929 QLHFVERNSKYLLSLVNQLMDFRKVESGKLEIVKTRGNFLKFIDSLITPFEVFAGERNIV 988 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-----IISTTHTSNEEVILR 740 ++ + P IL D +++++ N+LSNAI FTP+GG + +S+ E + + Sbjct: 989 LKRYYRMETPEILYDEEAMRKVVTNLLSNAIKFTPNGGTVSLYISSLSSGEGGKESLYIC 1048 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQ--IRGE-GTGLGLPLAKAMVDANMGKFYIFST 797 V DTG G+ +L + F Q N + + G+ GTG+GL L K +V + G+ + + Sbjct: 1049 VGDTGQGIPEEDLNRIFNRFYQSQNQVKYPVYGQAGTGIGLYLCKRIVQMHGGEIKVRNK 1108 Query: 798 PAKGTLIEIIFPL 810 G ++ PL Sbjct: 1109 RLSGCSFRLLLPL 1121 >gi|302036175|ref|YP_003796497.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii] gi|300604239|emb|CBK40571.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii] Length = 415 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/273 (28%), Positives = 136/273 (49%), Gaps = 27/273 (9%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + E ++ + L+ A+ A + + KS+FLA +SHEIRTP+ ++G ++ + + PL Sbjct: 133 LQELRESQATLTQARDAAIEGARLKSEFLATMSHEIRTPMNGVLGMTDWLLDT---PL-T 188 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 ++ A I SG+ +L I+ND+LD SKIESGK++L L + ++L A Sbjct: 189 AEQLDCAQTIRSSGDALLVIINDILDFSKIESGKLSLELLDFDLSTFLDRVMALFGERAQ 248 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII------------ 727 K +L+ + A ++P + D ++QI N+L+NAI F+ G ++ Sbjct: 249 RKGLLLTSRIAEDVPGSLCGDPARLQQILSNLLANAIKFSEHGSVSVLVELDQRPAEQGL 308 Query: 728 ---STTH---TSNEEVILRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 +T + ++ +E + +R D G+G+ K +PF Q S + GTGLG Sbjct: 309 EFPATRYGEPSAQQEQVTHIRFSVSDNGIGIEPSAFSKLFQPFVQADGSTTRKYGGTGLG 368 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 L + K +V+ G S P G++ PL Sbjct: 369 LAICKQLVELMGGHIGAESEPGSGSIFRFTVPL 401 >gi|156977380|ref|YP_001448286.1| sensor protein LuxQ [Vibrio harveyi ATCC BAA-1116] gi|156528974|gb|ABU74059.1| hypothetical protein VIBHAR_06167 [Vibrio harveyi ATCC BAA-1116] Length = 594 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/291 (27%), Positives = 144/291 (49%), Gaps = 12/291 (4%) Query: 532 STKEEKLLSLRIIIKKLPFSSCYSL-TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 + +E +L L +++ + + + L T H +++ K ++L A + AE+ + KS FLA Sbjct: 216 AQRESRLTWLFVLLSIILLVTAFVLQTQHRVNKLKHLNDELIEATEKAERAAKAKSQFLA 275 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SHE+RTP+ ++G S++I N+ E+ I S ++ I+ND+LD SK+ Sbjct: 276 TMSHELRTPMNGVLGISQIIANET----QEKTTKEHVKIILDSVQHLMTILNDILDFSKV 331 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL---ADLRSVKQI 707 E +++L P +L + ++ S +Q EK I + N +P + D V+QI Sbjct: 332 EENRLDLEAAPFNLLQVLTPVCSAIQPLVEEKNIQLYVE--NEVPDTIEFKGDCARVRQI 389 Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 N+ NA+ FT G +I + +++ V DTG+G+ + F Q S Sbjct: 390 LFNLAGNAVKFTGDGHVLIRAELDEQKRCLLISVNDTGIGIPGDKQGCIFNSFEQADTST 449 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT--LIEIIFPLYDTSHP 816 + GTGLGL + K + + G+ + S + GT ++E+ P + P Sbjct: 450 TRKFGGTGLGLAIVKKLTELMSGEIKLKSVESIGTQFVVELPIPWIEKELP 500 >gi|303326644|ref|ZP_07357086.1| sensory box sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] gi|302862632|gb|EFL85564.1| sensory box sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] Length = 683 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 128/243 (52%), Gaps = 7/243 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 + H K+ A S KS+FLA +SHEIRTP+ IIG + + +P + +Y + Sbjct: 297 RTQHEKQAAVIASQAKSEFLAHMSHEIRTPMNGIIGLTHLALQSD----PSPEHKDYLHK 352 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I S +L I+ND+LD+SKIE+ KM L +++E + + ++ ++K + Sbjct: 353 IRSSATSLLAIINDILDLSKIEANKMVLENVNYTMEEVLDFVYTSIRFPLDQKGLEYICE 412 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI-LRVRDTGV 746 A+++P ++ D +KQ+ LN+LSNA+ FT G ++ I ++ +++++ V DTG+ Sbjct: 413 VADDVPLKLWGDGLRLKQVLLNLLSNAVKFTSKGSVRLRIRRENSDSQDLLHFMVTDTGM 472 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G++ + P+ Q S R GTGLGL + K + G + S P G+ + Sbjct: 473 GISREYQQHLFDPYTQANASIARRFGGTGLGLSICKRIAGLMRGNLWCESEPGNGSTFHL 532 Query: 807 IFP 809 P Sbjct: 533 SIP 535 >gi|119490790|ref|ZP_01623122.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119453774|gb|EAW34932.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1111 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 119/231 (51%), Gaps = 4/231 (1%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S K +FLA SHE+RTPL IIG ++ + + G L + E I SG +L +V Sbjct: 441 SQIKDEFLANTSHELRTPLHGIIGLADSLIDGATGKLPT-KTTENLTMIANSGRRLLTLV 499 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 ND+LD SK++ + L + + L E + + L Q +K I + S +++P + AD Sbjct: 500 NDILDFSKLKHNTIELQLKSLGLWEVLDMVLVLSQSLVGQKNIKLINSVPDDLPGVEADE 559 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGVGMTNYELEKAMK 758 ++QI N++ NAI FT SG I + SN + + + DTG+G++ +LE+ Sbjct: 560 NRLQQILYNLIGNAIKFTESGTVEITACEKIIDESNHYIAVTISDTGIGISEDKLEQIFA 619 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F Q S + GTGLGL + K +V+ + G + S A+G+ P Sbjct: 620 SFEQGDGSTARQYSGTGLGLAVTKQLVELHCGTIEVRSKVAEGSQFTFTLP 670 >gi|110680736|ref|YP_683743.1| sensory box histidine kinase/response regulator, putative [Roseobacter denitrificans OCh 114] gi|109456852|gb|ABG33057.1| sensory box histidine kinase/response regulator, putative [Roseobacter denitrificans OCh 114] Length = 794 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 92/365 (25%), Positives = 172/365 (47%), Gaps = 21/365 (5%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT-VFLEQNTPSVMNHYLTEI 516 L ++ D + +++ G I+ N A +FGY + L + + Q+ + + Sbjct: 192 LASSLDAVLVVDTNGRIMDFNGAAETVFGYSRAEALGGDMADMIVPQHMREMHRKGMARF 251 Query: 517 LSLDLRQTLEKITLGSTKEEKL--------LSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568 L R+ + G + + L + L I + ++ + + DI+ + + Sbjct: 252 LETGKRKI---VGAGRVRLDGLRKSGEVFPVELSISLSEVNGERVFVSFLRDITRELETE 308 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++ A+ A++ KSD L +SHE+RTPL I+G ++ +RF + R N Sbjct: 309 AQVRAARDKAQEGEKAKSDLLTVMSHEMRTPLNGILGSLALLDKERF----DDRQKRLLN 364 Query: 629 YIDRSGNLVLDIVNDLLDISKIESG---KMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I SG L+L VND+LD+S +E + ++F+ L + V+E++ + A R+L Sbjct: 365 SISVSGELLLSHVNDVLDLSSLEKDAPRREKVNFDLAGLLQQVTESL-MANAEARGNRLL 423 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + T ++++ + R+++Q +N+L NAI FT G + + + V +RV DTG Sbjct: 424 L-TRLSDDLKTVTGAKRALQQCLVNLLGNAIKFTADGRVSVEAERLNGGDLVEIRVSDTG 482 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 VG+ +++ F I + + GTGLGL + K +V+ G S +G+L Sbjct: 483 VGIAPENMDRIFDEFVTIDTAYARQNTGTGLGLAITKRLVEGMGGTLEAESLLGEGSLFT 542 Query: 806 IIFPL 810 + PL Sbjct: 543 LRVPL 547 >gi|330900706|gb|EGH32125.1| response regulator receiver [Pseudomonas syringae pv. japonica str. M301072PT] Length = 934 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 126/232 (54%), Gaps = 3/232 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ S +KS+FLA +SHE+RTPL + + ++++ + G +++A I +GN +L Sbjct: 250 QRASKYKSEFLANMSHELRTPLNSSLILAKLLA-ENPGENLTAEQVKFAESIYSAGNDLL 308 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++ND+LDISK+E+GK+ + E S+ + +L Q A EK++ P +L Sbjct: 309 NLINDILDISKVEAGKLEVRPENSSVPRLIEGLRTLFQPLAAEKKLAFTVDIQTGAPTML 368 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + ++QI N+LSNAI FT +G + + + + VRD+G+G+ + Sbjct: 369 FTDRQRLEQILKNLLSNAIKFTEAGS-VSMVVSRQPGAGIAFIVRDSGIGIAEEHQQGIF 427 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q + R GTGLGL +++ + G + S P +G++ ++ P Sbjct: 428 EAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSAPGQGSIFSLVLP 479 >gi|317154644|ref|YP_004122692.1| ATPase ATP-binding domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316944895|gb|ADU63946.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 664 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 127/239 (53%), Gaps = 10/239 (4%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++L +A +AE+ + KS FL+ +SHEIRTP+ A++G +E++ P Y Sbjct: 267 DELRNATLVAERANLAKSRFLSSMSHEIRTPMNAVLGMAEILGETEL----TPDQTRYVQ 322 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +G +L I++D++D+S+IE+G + L +L E V +A ++++ A +K + + Sbjct: 323 IIRAAGESLLAILSDIIDLSRIETGSLRLDETRFTLSETVDKAFAIIEPRAGQKSLELVC 382 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRD 743 + A ++P R+ D + + Q+ +++L NA+ FT GG + +S + + V V D Sbjct: 383 TLAPDVPNRLTGDPKLLTQVLVHLLGNAVKFT-EGGTVRLSVSRAPGRDGGVAVQFSVSD 441 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TG G+ L F Q NS G GLGL ++K +V G+ + S+ G+ Sbjct: 442 TGPGIPADRLGAIFDSFTQANNSTTREHGGAGLGLTISKRIVHMMGGRIWAESSVGLGS 500 >gi|16762498|ref|NP_458115.1| hybrid sensory histidine kinase TorS [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143986|ref|NP_807328.1| hybrid sensory histidine kinase TorS [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|289826393|ref|ZP_06545505.1| hybrid sensory histidine kinase TorS [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25512351|pir||AD0959 Two-component sensor protein histidine protein kinase. [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504803|emb|CAD03168.1| Two-component sensor protein histidine protein kinase [Salmonella enterica subsp. enterica serovar Typhi] gi|29139622|gb|AAO71188.1| two-component sensor protein histidine protein kinase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 911 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/247 (34%), Positives = 129/247 (52%), Gaps = 19/247 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK + KS FLA +SHEIRTPL I+G +++ ++ PL Y + I+ Sbjct: 433 QARAEAEKANEAKSTFLAAMSHEIRTPLYGILGTVQLLADK---PL-MANYRDDLQAIND 488 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHF--EPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG +L I+ND+LD S IE G N+ EP + ++ A+ L+ + ++ + T F Sbjct: 489 SGESLLAILNDILDYSAIEVGGTNVSISEEPFEPRQLLNSALHLMH---SRVQVALITDF 545 Query: 691 ANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 + +P L D R ++QI +N+LSNA FT G I+ T ++ + V DTG G+ Sbjct: 546 SEQLPSTLQGDPRRIRQIVINLLSNAAKFTDRGS--IVLRTFCDDQSWFIEVEDTGCGIP 603 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L KPF Q RG GTGLGL ++ ++ +A G + ST G+ + P Sbjct: 604 EAKLTAIFKPFVQATGC---RG-GTGLGLAISASLAEAMGGTLTVTSTLHVGSCFRLQLP 659 Query: 810 LYDTSHP 816 + HP Sbjct: 660 V---RHP 663 >gi|148657711|ref|YP_001277916.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148569821|gb|ABQ91966.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 577 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/265 (30%), Positives = 131/265 (49%), Gaps = 4/265 (1%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 M D+ + KQ + A+ AE S KS FLA +SHE+RTPL AI+G+ +++ + Sbjct: 282 MDDLVQRKQAEEAAHRAQAAAEAASHAKSMFLATMSHELRTPLNAILGYVQLLHLEAHMR 341 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 G + I +G +L I++++LD SKIE GKMN+ P S+D E I ++ Sbjct: 342 -GRSEMLPDLERIRSAGKHLLTIISNILDFSKIEQGKMNVEINPFSVDTVAREVIGIIDP 400 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII--STTHTSNE 735 A ++ + + + +D V+QI N+LSNA+ FT G + H + Sbjct: 401 LARNRKNTLNLVCPPDAGMMQSDAGKVRQILFNLLSNAVKFTEEGTVTLTVERERHPDGD 460 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V V DTG+G+ ++ +PF Q+ ++ GTGLGL L++ + G + Sbjct: 461 WVQFSVADTGIGIAPEQMAHLFQPFYQVHQNRSRNYGGTGLGLALSRQLCRLLGGDIRVT 520 Query: 796 STPAKGTLIEIIFP-LYDTSHPHDC 819 S +G++ + P D +H D Sbjct: 521 SEVGRGSVFTVRLPACIDAAHTADV 545 >gi|117924203|ref|YP_864820.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607959|gb|ABK43414.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 894 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 100/388 (25%), Positives = 181/388 (46%), Gaps = 19/388 (4%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLE 502 ++++E EV +L +E + + I + EG +L N L GY P E I R P + Sbjct: 376 RKRIEAEVTKLSQAVEQSPTALLITDTEGSVLYVNPEFVSLTGYRPDEVIGRNPRML--- 432 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---- 558 ++ + Y +L+ + + + K K + I + S + Sbjct: 433 KSGETARETYRDLWGTLNQGRAWQGVFRNRKKNGKRYWEKNTISPIRDSDGKVINFMSIK 492 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DIS + ++ HA+ AE + KS+FL ++HE RTPL I G ++I+++ L Sbjct: 493 EDISARIALEKEIEHARTAAETANQVKSEFLTHMTHEFRTPLNIIKGCVKLIRDE--NNL 550 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + + N +D + +L ++ DL+D+S++ES + +LH EP L ++E ++L Sbjct: 551 SDKQGRQLENILDGATHLA-TMIQDLVDLSRVESEQFHLHEEPCDLSHLLTELHDEMELK 609 Query: 679 ANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-----THT 732 + EK++ + + P I+ D ++ N+L+NAI FT GQ+ ++ T Sbjct: 610 SQEKQLTFAVEVSPTLPPEIMLDAARLRHALTNLLTNAIKFTHE-GQVSLNCWYEGETKA 668 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + + DTGVG+ + ++ +PF Q RG G GLGL + K +V+ G Sbjct: 669 RTGTLHFVISDTGVGIPSEQIHAIFEPFNQGDMPAMTRG-GVGLGLTITKRLVEVMDGTI 727 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 + S P G++ I P P + + Sbjct: 728 EVRSEPDHGSVFHIQLPCRKVWRPQEAL 755 >gi|254458425|ref|ZP_05071850.1| PAS/PAC sensor signal transduction histidine kinase [Campylobacterales bacterium GD 1] gi|207084733|gb|EDZ62020.1| PAS/PAC sensor signal transduction histidine kinase [Campylobacterales bacterium GD 1] Length = 514 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 112/386 (29%), Positives = 191/386 (49%), Gaps = 29/386 (7%) Query: 436 EDVDTRINKR-KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 E ++T N+ K+E + QL ++A S ++ N +GII N+A ++ GY +++++ Sbjct: 145 EHIETLKNRNSKLENKNTQLNKAIDA-SVLVSKSNTKGIITYANQAFIEVSGYSLDELIG 203 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTL--EKITLG--STKEEKLLSLRIIIKKLPF 550 + +T + H D+ +T+ +K+ G K + + + +P Sbjct: 204 NSHNIVRHSDTEDELYH--------DMWKTIRSKKVWRGMLKNKAKDGHDYYVDVTIVPV 255 Query: 551 SSCYSLTMHDISEW---KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + T + ISE+ + E L A + A++ K FLA +SHE+RTPLTAI+GFS Sbjct: 256 LN----TKNRISEFLSIRYEVTNLVLATRKAQESQMAKEQFLANMSHELRTPLTAILGFS 311 Query: 608 EVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 ++I P I + I+ +G +L VN +LD+SKIESG+M F+ L Sbjct: 312 QMI----MARADTPEIISNCVSKINIAGINLLTQVNTILDLSKIESGQMTYQFDNFQLKP 367 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 E +++ A +K I + + + D S+KQ+ +N+LSNAI FT + Sbjct: 368 LFEELRVILESQAKDKNISLIMPMIDK-EEMHGDKLSIKQVFMNLLSNAIKFTAINTTVE 426 Query: 727 IS-TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 IS T + +E I +V D G G+ +++ +PF Q NS+ GTGLGL + K +V Sbjct: 427 ISYTCNIEQKEHIFKVYDQGDGVDEKDIQTLFEPFYQGENSRINATPGTGLGLAICKKIV 486 Query: 786 -DANMGKFYIFSTPAKGTLIEIIFPL 810 D + GK + + G+ + P+ Sbjct: 487 TDVHKGKIGVENIKNGGSCFYMTIPI 512 >gi|332308372|ref|YP_004436223.1| histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175701|gb|AEE24955.1| histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 661 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/271 (29%), Positives = 141/271 (52%), Gaps = 15/271 (5%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y+L +I EK ++ K AE E+ K FLA +SHE+RTPLT+I+G++E++ + Sbjct: 124 YALARREI-----EKERVDRLK--AEAENRSKDRFLAHLSHELRTPLTSILGYTELLMDS 176 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + G E + ++ S +L L ++N++LD+SKI + K+ L+ V+LD +++ + Sbjct: 177 KVGQSAQS---ELSIVLNNSKHL-LSLLNNMLDLSKIAADKLELNLSEVNLDAMIADVYA 232 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII--ISTT 730 L+ + A +K + + S A +P +I D +Q+ +N++SNAI FT G + S Sbjct: 233 LMTIPATDKGLTLTVSSATPLPLKITTDATRFRQVLINLISNAIKFTEKGSVDVSLWSEK 292 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + V DTG+G+ ++ KPF Q+ + G+GLGL + +V G Sbjct: 293 RNKTDYLYFTVADTGIGIPKNQIGCIFKPFEQVADVVSRNQGGSGLGLAICNELVSKMGG 352 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSH-PHDCI 820 + S KG+ D S P++ + Sbjct: 353 DVSLTSEFGKGSCFTAYIETGDVSQVPYEVL 383 >gi|300866718|ref|ZP_07111402.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300335318|emb|CBN56562.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1199 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 94/306 (30%), Positives = 160/306 (52%), Gaps = 33/306 (10%) Query: 540 SLRIIIKKLPF----SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 SLR + +L S+ + +ISE KQ + L AK+ AE + KS+FLA +SHE Sbjct: 651 SLRQLCVQLAIAIQQSTLFEQAQIEISERKQAELALQQAKEAAEAANRAKSEFLANMSHE 710 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 +RTPL I+G+++++K L + + D G+L L +++D+LD+SKIE+ KM Sbjct: 711 LRTPLNGILGYTQILKMH--DNLTSQQQDNLQTIQDCGGHL-LTLIDDILDLSKIEAEKM 767 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714 L+ + + L Q+ A++K I + +PR I AD + ++Q+ +N+L N Sbjct: 768 ELYPTELDFRNFIKSISDLFQMRASQKNIAFTCEELSQLPRSIYADEKRLRQVLINLLGN 827 Query: 715 AIHFTPSG----------------GQIIISTTHTSNE------EVILRVRDTGVGMTNYE 752 A+ FT SG G I + T+N ++ +V DTG+G+ + Sbjct: 828 AVKFTNSGGVTFKVGCLEGGEWGLGTIGNNEQRTTNNYQLPIIKLRFQVEDTGIGIEASK 887 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPL 810 LE+ PF Q+ + + EGTGLGL +++ +V G+ + S KG++ +++ PL Sbjct: 888 LEEIFLPFHQVSD-RAYSTEGTGLGLSISQKLVKMMGGEIGVKSALNKGSIFWVDLELPL 946 Query: 811 YDTSHP 816 + S+P Sbjct: 947 VENSYP 952 >gi|91224277|ref|ZP_01259539.1| hypothetical protein V12G01_16607 [Vibrio alginolyticus 12G01] gi|91190619|gb|EAS76886.1| hypothetical protein V12G01_16607 [Vibrio alginolyticus 12G01] Length = 566 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 118/237 (49%), Gaps = 7/237 (2%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 +K AE+ +F+A ++HE+RTPL ++G +E++ + +Y + + +SG Sbjct: 195 RKRAEESEKATKEFVAMINHELRTPLNGVLGSAELLSRTQL----EEEQRQYLSNLTQSG 250 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L+ I+NDLLD SK+ +G M + + + +E + + A EKRI I Sbjct: 251 DLLRVIINDLLDFSKMNAGMMEIIHKVFAWEELEKAIMGVFAAKAAEKRIHFSIDKKLGI 310 Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 P L DL + QI +N++ NAI FT GG ++ N V DTG+G+ Sbjct: 311 PEFLVGDLERITQILVNLVGNAIKFTHLGG--VVLRVEWLNGTAYFEVEDTGIGIPIKAQ 368 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 PF Q+ S + EG+GLGL + K +VD G+ S KGT ++ PL Sbjct: 369 PSLFDPFVQVDRSAKRSFEGSGLGLAICKNLVDLMQGQISFESEERKGTTFKVAIPL 425 >gi|167768187|ref|ZP_02440240.1| hypothetical protein CLOSS21_02743 [Clostridium sp. SS2/1] gi|167709711|gb|EDS20290.1| hypothetical protein CLOSS21_02743 [Clostridium sp. SS2/1] Length = 762 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/256 (32%), Positives = 131/256 (51%), Gaps = 11/256 (4%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E Q K A ++A S KSDFLA +SH+IRTP+ AI+G + +I++ GN Sbjct: 347 TELTQAKRAAEQAFEVANNASQSKSDFLASMSHDIRTPMNAIMGITSLIRHDA----GNK 402 Query: 622 -RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + IEY + ID S +L I+ND+LD+SKIE+GK + S+ E + E ++ Sbjct: 403 DKVIEYVDKIDVSAQHLLGIINDVLDMSKIEAGKTVFSYSDFSILEFMQEIQTMFCPQTE 462 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIII-----STTHTSN 734 EK + N + + +D + QI N+LSNA+ +T GG+I T ++ Sbjct: 463 EKHQSLVIHHENIVHEWVNSDYVHLMQIFSNLLSNAVKYTQKGGKIQFLVEECETKSSAY 522 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + V D GVGM+ +K F + +S + +GTGLG+ + K +++A G + Sbjct: 523 AKYHFAVIDNGVGMSEDFKDKIFDTFTREESSLTNKIQGTGLGMAITKNLIEAMGGTIDV 582 Query: 795 FSTPAKGTLIEIIFPL 810 S G+ E+ L Sbjct: 583 DSELGLGSCFEVFMDL 598 >gi|221197027|ref|ZP_03570074.1| signal transduction histidine kinase [Burkholderia multivorans CGD2M] gi|221203699|ref|ZP_03576717.1| signal transduction histidine kinase [Burkholderia multivorans CGD2] gi|221175865|gb|EEE08294.1| signal transduction histidine kinase [Burkholderia multivorans CGD2] gi|221183581|gb|EEE15981.1| signal transduction histidine kinase [Burkholderia multivorans CGD2M] Length = 549 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/262 (30%), Positives = 131/262 (50%), Gaps = 4/262 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI--KNQ 613 L DI + K A+ AE+ ++ K +FLA VSHE+R PL I ++ V+ ++ Sbjct: 149 LAFQDIHQLKSALGTAQSAQLDAERANTAKDNFLALVSHELRAPLNVISSWAAVLMTASE 208 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 R P I R L ++++DLLD+S+I SG+ +L +PV AV + Sbjct: 209 RGMPTDEQMSQRAVTTILRHCQLQAELIDDLLDVSRISSGRFSLDSKPVDFAAAVRTVVE 268 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + A +K I++ TS + + D R ++Q+A N++ NA+ FTP GG++ ++ T Sbjct: 269 SHRPVAAKKDIMLATSGLQSQAVVSGDARRLQQVASNLIGNALKFTPQGGRVEVALTRL- 327 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + L V D G+G+ L + F Q S+ + G GLGL + K +V A+ G Sbjct: 328 GALIELSVADNGIGVKPELLPRLFDRFMQSDTSRTRQYGGLGLGLSIVKHLVTAHGGTVT 387 Query: 794 IFS-TPAKGTLIEIIFPLYDTS 814 S +GT + + PL T+ Sbjct: 388 ASSEGEGRGTRLTVRIPLLQTA 409 >gi|323496614|ref|ZP_08101667.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326] gi|323318360|gb|EGA71318.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326] Length = 810 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/253 (30%), Positives = 131/253 (51%), Gaps = 11/253 (4%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H I + Q+ L K A+ + KS FLA +SHEIRTP+ ++G ++++ PL Sbjct: 327 HLIDTFNQKTVFLEAEKVTAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKT---PL 383 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + ++ N + SG+ ++ ++N++LD SKIE G + L P L+ + S+ Sbjct: 384 SEEQR-KHLNTLYESGDHMMTLLNEILDFSKIEQGHLELENHPFPLESIIGSINSVYYTL 442 Query: 679 ANEKRILIRTSFANNIPR---ILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSN 734 EK + + + +P +D ++QI N+L+NA+ FT G ++ IS T++ Sbjct: 443 CAEKGLQFKV--ISEVPAERWYRSDKARLRQILFNLLNNAVKFTSRGYVEVYISEKQTAD 500 Query: 735 EEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E + +R+RDTG+G+ EK KPF Q S R GTGLGL + K + + G + Sbjct: 501 AEYLHIRIRDTGIGIAKEAQEKIFKPFEQAETSTTRRFGGTGLGLAIVKQLCELMDGDVH 560 Query: 794 IFSTPAKGTLIEI 806 + S G+ E+ Sbjct: 561 LTSELGIGSCFEV 573 >gi|312977020|ref|ZP_07788769.1| sensory box histidine kinase VicK [Lactobacillus crispatus CTV-05] gi|310896348|gb|EFQ45413.1| sensory box histidine kinase VicK [Lactobacillus crispatus CTV-05] Length = 620 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 96/372 (25%), Positives = 176/372 (47%), Gaps = 40/372 (10%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E +L S+L SDG+ +R G + N ++++ KP L Sbjct: 264 ERRRLDSVLSHMSDGVLATDRHGNVSVVNHMALNFLNKKEDEVINKPIAEVLG------- 316 Query: 510 NHYLTEILSLDLRQTLEKITLG---STKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEW 564 L + S DL + ++I + T++E +L S +I + F S +HD++E Sbjct: 317 ---LEDTSSQDLISSQKEIVITLDPGTRDEIILHASFSLIKRVTGFVSGSVCVLHDVTE- 372 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGNPRY 623 Q+KN+ S + F++ VSHE+RTPLT++ + E + + P P++ Sbjct: 373 -QQKNEDSQRQ------------FVSNVSHELRTPLTSLQAYIEALNEGAWKNPEIAPKF 419 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 +E + + ++ ++NDLL +S+++ G + E V+L++ V+ ++ + + Sbjct: 420 LEVTQ---QETSRMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDK 476 Query: 684 IL------IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 I+ + + D + Q+ NI++NAI ++P GG I + T N V Sbjct: 477 NKEKKKYTIKRELGSQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRMTQNQNH-V 535 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 IL + D G+G+ +L K F ++ ++ GTGLGL +AK +V+A+ GK + S+ Sbjct: 536 ILSISDQGLGIPRKDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGKIWADSS 595 Query: 798 PAKGTLIEIIFP 809 KG+ I P Sbjct: 596 EGKGSTFYISLP 607 >gi|238793308|ref|ZP_04636934.1| Multi-sensor hybrid histidine kinase [Yersinia intermedia ATCC 29909] gi|238727277|gb|EEQ18805.1| Multi-sensor hybrid histidine kinase [Yersinia intermedia ATCC 29909] Length = 645 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/246 (32%), Positives = 128/246 (52%), Gaps = 11/246 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ L+ +K++AE+ + KS L +SHEIRTPL IG E+++N PL + +Y Sbjct: 83 KERTLALAKSKQVAEQANRRKSVHLTTISHEIRTPLNGTIGAIELLQNT---PLTSEQY- 138 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 A + + +L IVN+LLD S+IESG+M L E +L + +A+ + A K I Sbjct: 139 RLAETARQCSHSLLTIVNNLLDFSRIESGQMALSQEKSALLPLLDQAMLTIHSQALSKAI 198 Query: 685 LIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + T ++++P L D + ++QI +N+L NA+ FT G I T +++ V D Sbjct: 199 TLSTYVSSDVPLALELDKQRLQQILVNLLGNAVKFTQCGH--IKLTVVRKGQQLCFIVED 256 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG G+ ++ PF Q G+GTGLGL +A + G +FS P G+ Sbjct: 257 TGCGIDLQLQQEIFHPFIQTHE----HGQGTGLGLTIADNLARMMGGNITLFSLPDHGSR 312 Query: 804 IEIIFP 809 + P Sbjct: 313 FSLNLP 318 >gi|171912848|ref|ZP_02928318.1| Multi-sensor Hybrid Histidine Kinase [Verrucomicrobium spinosum DSM 4136] Length = 693 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 124/240 (51%), Gaps = 9/240 (3%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A+ A++ + K +FLA +SHE+R PL AI+G++ +++ + P + I+R+ Sbjct: 285 ARAEADRANRIKDEFLATLSHELRNPLNAILGWASILRTESSDP---DELAAGLDVIERN 341 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 L ++ DLLD+S+I SGK++L +P +L E + +++ A EKRI + T + Sbjct: 342 TQLQAKLIADLLDMSRILSGKVHLDLKPTNLLSLAREGVETIRIMAEEKRITVTTP--GD 399 Query: 694 IPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 P ++ D ++QI N+L+N + FTP GG + +S + L V DTG G+ Sbjct: 400 APPVMVSGDSARLQQIIWNLLTNGVKFTPPGGSLDLSII-CGQDRAELVVTDTGTGIDPQ 458 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-AKGTLIEIIFPL 810 L F Q S + G GLGL + K + + + G +FS KG ++ PL Sbjct: 459 FLPHVFDRFRQADASSTRKYGGLGLGLSIVKHLTEMHHGTVQVFSPGVGKGATFKVTLPL 518 >gi|150402473|ref|YP_001329767.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C7] gi|150033503|gb|ABR65616.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C7] Length = 639 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 126/226 (55%), Gaps = 4/226 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+ +A VSHE+RTPLT+I G+ E++ + G + + + + D + + ++ + Sbjct: 413 KSELIAIVSHELRTPLTSIKGYVELVLDGTMGAINDSQK-KCLQVADDNIVRLRRLIESM 471 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+SKIE G++ ++ E V+L V + I ++ A EK I + I AD + Sbjct: 472 LDLSKIERGELEMYREKVNLKGIVCDVIEYLKPLATEKNIKLNREVEE--ITIEADKDRI 529 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 Q+ N++ NAI F+P+ I+IS +E V L+V D G G+ ++EK F Q+ Sbjct: 530 TQVLTNLIENAIKFSPANESIMISGV-LEDEHVHLKVTDHGAGIPKKDMEKVFNRFYQVD 588 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +S + + G+GLGL + K++V+A+ G ++ S KG+ I+ P+ Sbjct: 589 SSTKRKKGGSGLGLAVCKSIVEAHKGSIWVESELGKGSTFHILLPI 634 >gi|213648654|ref|ZP_03378707.1| hybrid sensory histidine kinase TorS [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 751 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/247 (34%), Positives = 129/247 (52%), Gaps = 19/247 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK + KS FLA +SHEIRTPL I+G +++ ++ PL Y + I+ Sbjct: 433 QARAEAEKANEAKSTFLAAMSHEIRTPLYGILGTVQLLADK---PL-MANYRDDLQAIND 488 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHF--EPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG +L I+ND+LD S IE G N+ EP + ++ A+ L+ + ++ + T F Sbjct: 489 SGESLLAILNDILDYSAIEVGGTNVSISEEPFEPRQLLNSALHLMH---SRVQVALITDF 545 Query: 691 ANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 + +P L D R ++QI +N+LSNA FT G I+ T ++ + V DTG G+ Sbjct: 546 SEQLPSTLQGDPRRIRQIVINLLSNAAKFTDRGS--IVLRTFCDDQSWFIEVEDTGCGIP 603 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L KPF Q RG GTGLGL ++ ++ +A G + ST G+ + P Sbjct: 604 EAKLTAIFKPFVQATGC---RG-GTGLGLAISASLAEAMGGTLTVTSTLHVGSCFRLQLP 659 Query: 810 LYDTSHP 816 + HP Sbjct: 660 V---RHP 663 >gi|183220935|ref|YP_001838931.1| putative signal transduction histidine kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911031|ref|YP_001962586.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775707|gb|ABZ94008.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779357|gb|ABZ97655.1| Putative signal transduction histidine kinase; putative membrane protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 1206 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 126/241 (52%), Gaps = 7/241 (2%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L +K+ AE S KS FLA +SHEIRTP+ AIIGF+EV+ + P N +++E I Sbjct: 580 LIESKEKAEMASITKSTFLANMSHEIRTPMNAIIGFTEVLLSDP-NPNQNKKHLET---I 635 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 S +L ++ND+L+ +K++ G + L SL V + S + A K + T + Sbjct: 636 RNSAKSLLRLLNDVLNSAKLDRGALELESVDFSLISLVDQVSSTFIMEAKRKGLEFLTHY 695 Query: 691 ANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 +N + D ++QI N++ NAI FT G + T H +V+ ++DTG+G+ Sbjct: 696 SNELEDYYRGDSLRIRQILTNLIGNAIKFTKQGKIELFITPHKG--QVLFHIQDTGIGIA 753 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +EK +PF Q S + GTGLG ++K +V+ GK ++ S GT P Sbjct: 754 EDRMEKIFEPFTQADVSMSRKFGGTGLGTTISKQLVELMGGKIWLESKLGVGTNFYFSLP 813 Query: 810 L 810 L Sbjct: 814 L 814 >gi|26000240|gb|AAN75562.1| putative sensor protein BvgS [Bordetella avium 197N] Length = 1112 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/254 (31%), Positives = 136/254 (53%), Gaps = 8/254 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E + L AK+ A+ + KS FLA +SHEIRTP+ AIIG E ++ +R Sbjct: 590 DLTERIRLLXDLHEAKEEADAANRAKSTFLATMSHEIRTPMNAIIGMLE-LELRRPADQA 648 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R Y S +LD++ D+LDISKIE+ ++ L P L + + I++ Q A Sbjct: 649 TDRSALQITY--DSARSLLDLIGDILDISKIEADRLELSPHPTDLRKLLDGIINVFQGLA 706 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNE 735 + + + P +L D +K + ++SNA+ FT GG I+ + T Sbjct: 707 RQHGLSLTLQIDPPHPXXVLLDATRLKXVISXLVSNALKFTEVGGVIVSLKVRTXEDXRA 766 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPN-SQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 ++ L V D+G G+++ + ++ +PF + + ++ R GTGLGL +++ +++A G F + Sbjct: 767 KIELAVDDSGPGISSADRQRLFEPFXXVHDQAKAARAAGTGLGLVISRRLIEAMGGHFDL 826 Query: 795 FSTPAKGTLIEIIF 808 S P KGT I+++ Sbjct: 827 SSIPGKGTRIDVLL 840 >gi|312892347|ref|ZP_07751842.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311295131|gb|EFQ72305.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1043 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 104/379 (27%), Positives = 179/379 (47%), Gaps = 42/379 (11%) Query: 431 NGIEPEDVDTRINKRK-MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 N + V I KRK E E+ L + +T+ G+ I +++G + N A K+ GY Sbjct: 518 NVVRQTSVVIDITKRKEAEEELTTLSLVASSTTSGVVINDKDGCVEWVNDAFEKITGYN- 576 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI------ 543 T +++ V+ LT++ ++ + L + K+ L L I Sbjct: 577 -------LTSVYQRHIGDVLKGELTDVALIEKARELSR-----NKQSFELDLLIYRSDGQ 624 Query: 544 -----IIKKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 +I + F S Y + DI+ K + +L AK+ A + ++ K F++ +S Sbjct: 625 PIWVSVINSVIFDSNGGVSKYVEVLIDITAKKNAEQQLIDAKEEALQLNTAKDMFISVMS 684 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY--IDRSGNLVLDIVNDLLDISKIE 651 HEIRTPL A+IG S ++ NP + + N + S + ++ ++ND+LD +K+E Sbjct: 685 HEIRTPLNAVIGISNLLIED------NPSHSQQENLKILKFSADNLMTLINDVLDFTKVE 738 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALN 710 +G + L +++ E V ++ +Q A K I IRT +P IL D + QI LN Sbjct: 739 TGNVELEKTNLNIRELVDSVVNSLQYKAEAKHIYIRTDIDEQLPLDILGDKTRICQILLN 798 Query: 711 ILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQ 767 ++ N++ FT GG I + + +V +R V DTG+G+ +L + F Q Sbjct: 799 LVGNSVKFTEKGGVTIDLKLIEQTAGQVRIRFEVSDTGIGIPPDKLNTVFESFKQAQTDT 858 Query: 768 QIRGEGTGLGLPLAKAMVD 786 GTGLGL + K +++ Sbjct: 859 TRLYGGTGLGLAITKRLIE 877 >gi|283851110|ref|ZP_06368394.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573506|gb|EFC21482.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 869 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 85/336 (25%), Positives = 156/336 (46%), Gaps = 13/336 (3%) Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE---KITLG 531 LS ++ V +LF P +L +F E+ + R L+ ++ G Sbjct: 379 LSMSQGVERLFDLPAARVLENAGLLFDRIEAADREAFRRAEVEAAAGRAALDVQARMRAG 438 Query: 532 STKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 + R ++ P + + D++ K+ ++ L A AE S KS+FLA Sbjct: 439 DGSV-RWCQFRAASRQAPEGGVVFDGVLFDVTAQKRTESNLRQAMAEAETASKVKSEFLA 497 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SHE+RTPL ++G ++++ PL A + G ++ ++ D+LD S I Sbjct: 498 NISHEVRTPLNGVLGMLQLLE---MSPLSEEDAASVATALT-CGRGLVKVLADILDFSLI 553 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIAL 709 ++G++ L + + V++ ++ +K I + + ++ +P +A D ++QI Sbjct: 554 DAGRVALCQDACDIRAVVTDVCGMLSPECGKKGISLFSEVSDAVPPFVATDAARLRQILF 613 Query: 710 NILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 N+L NA+ FT G I+ ++ ++ VRDTG+G+ +++ PF QI S Sbjct: 614 NVLGNAVKFTSWGVVRLSIVPASRRGGTLHLLFTVRDTGIGIPEERMDEIFDPFTQIDGS 673 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + GTGLGL + K ++ G + S P KGT Sbjct: 674 LTRKFGGTGLGLGIVKRLIGLLDGHITVESEPGKGT 709 >gi|298481494|ref|ZP_06999686.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298272358|gb|EFI13927.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 631 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 133/248 (53%), Gaps = 15/248 (6%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ ++LS A + AE+ + KS FLA +SHEIRTPL AI+GFS ++ + +P + Sbjct: 392 RKAYSRLSEAVEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPHTE-----DPVEM 446 Query: 625 -EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 EYA+ I+ + +L+L ++ND+LD+SKIE+G + + + +++ + E ++L Sbjct: 447 REYADIIETNTDLLLQLINDILDLSKIEAGTFDFYPSSIDVNQTMEEIEQSMRLRLKNSD 506 Query: 684 ILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + + +F +P L D + Q+ N ++NAI FT + G I + T + + V Sbjct: 507 VTL--AFTERLPGCLFYIDKNRLIQLLANFVNNAIKFTQT-GTICMGYRMTDTDTIYFYV 563 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG GM+N + E + F + Q GTGLGL + + +V+ GK + S KG Sbjct: 564 SDTGCGMSNEQCEHVFERFVKYNPFIQ----GTGLGLSICRTIVERLGGKIGVDSEEGKG 619 Query: 802 TLIEIIFP 809 + P Sbjct: 620 STFWFTLP 627 >gi|17229208|ref|NP_485756.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17135536|dbj|BAB78082.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1333 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/263 (29%), Positives = 142/263 (53%), Gaps = 12/263 (4%) Query: 556 LTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 L + DI++ KQ + + +H A+ AE + K +FL+ +SHE+R PL +++G++ Sbjct: 913 LVIEDITQQKQLEAERTHLLAQEQSARNAAEAANHAKDEFLSILSHELRNPLNSMLGWAN 972 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 +++ + + + +E I+RS +++DLLD+S+I SG++ + + V L + Sbjct: 973 LLRTHQLEEVTVNQGLEA---IERSAQAQNHLISDLLDVSRISSGRLRMDAQEVELIPVI 1029 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 AI++V+L A K I I T +L D ++Q+ N+LSNAI FTP+ G+I ++ Sbjct: 1030 EAAIAVVRLAAEAKNIQIETKLDPTHTPMLGDPIRLQQVIWNLLSNAIKFTPTKGRIDVT 1089 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 +T + I +V+DTG G+ L + F Q ++ +G GLGL + + +V+ + Sbjct: 1090 LEYTYFQAQI-QVKDTGAGIKADFLPYVFERFRQADGTRTRSNQGLGLGLSIVRHLVELH 1148 Query: 789 MGKFYIFST-PAKGTLIEIIFPL 810 G + S +G+ I P+ Sbjct: 1149 GGTVEVESQGEGQGSTFTIKLPV 1171 >gi|283851135|ref|ZP_06368419.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573531|gb|EFC21507.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 886 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/259 (30%), Positives = 125/259 (48%), Gaps = 15/259 (5%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 ++ L AK+ AE S KS+FLA +SHE+RTPL I G ++++ G +E Sbjct: 483 RDAGTLRAAKEAAETASRAKSEFLANMSHELRTPLNGIQGMAQLLD-------GTDLTVE 535 Query: 626 YANYIDR---SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y+D S + ++ D+LD+S++ESGK+ L EP L + ++ + + E Sbjct: 536 QKEYVDAALASCRRLTRLLGDILDLSRVESGKLGLVSEPFRLADLIASVSAAFEPACREA 595 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII----ISTTHTSNEEV 737 + T A ++P L D ++QI N+ NA+ FT +G + S V Sbjct: 596 GVAWITDVARDVPETLWGDEGRMRQILCNLAGNAVKFTRAGSVRLEVRAGSRDAAGRGSV 655 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V DTGVG+ +LE+ + F Q+ S R +G GLGL + + +V G + S Sbjct: 656 LFTVADTGVGIAEEDLERVFEAFHQVERSFSRRFQGAGLGLAIVRRLVGLMGGVVVLESE 715 Query: 798 PAKGTLIEIIFPLYDTSHP 816 +GT PL + P Sbjct: 716 VGRGTECVCALPLIRPAVP 734 >gi|227879007|ref|ZP_03996903.1| histidine kinase [Lactobacillus crispatus JV-V01] gi|256844226|ref|ZP_05549712.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|256849374|ref|ZP_05554807.1| two-component system response regulatory system histidine kinase [Lactobacillus crispatus MV-1A-US] gi|262047879|ref|ZP_06020827.1| two-component system response regulator [Lactobacillus crispatus MV-3A-US] gi|293380063|ref|ZP_06626159.1| hypothetical protein HMPREF0891_0157 [Lactobacillus crispatus 214-1] gi|295691936|ref|YP_003600546.1| sensor protein [Lactobacillus crispatus ST1] gi|227861396|gb|EEJ69019.1| histidine kinase [Lactobacillus crispatus JV-V01] gi|256613304|gb|EEU18507.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|256714150|gb|EEU29138.1| two-component system response regulatory system histidine kinase [Lactobacillus crispatus MV-1A-US] gi|260571823|gb|EEX28396.1| two-component system response regulator [Lactobacillus crispatus MV-3A-US] gi|290923377|gb|EFE00284.1| hypothetical protein HMPREF0891_0157 [Lactobacillus crispatus 214-1] gi|295030042|emb|CBL49521.1| Sensor protein [Lactobacillus crispatus ST1] Length = 617 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 96/372 (25%), Positives = 176/372 (47%), Gaps = 40/372 (10%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E +L S+L SDG+ +R G + N ++++ KP L Sbjct: 261 ERRRLDSVLSHMSDGVLATDRHGNVSVVNHMALNFLNKKEDEVINKPIAEVLG------- 313 Query: 510 NHYLTEILSLDLRQTLEKITLG---STKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEW 564 L + S DL + ++I + T++E +L S +I + F S +HD++E Sbjct: 314 ---LEDTSSQDLISSQKEIVITLDPGTRDEIILHASFSLIKRVTGFVSGSVCVLHDVTE- 369 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGNPRY 623 Q+KN+ S + F++ VSHE+RTPLT++ + E + + P P++ Sbjct: 370 -QQKNEDSQRQ------------FVSNVSHELRTPLTSLQAYIEALNEGAWKNPEIAPKF 416 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 +E + + ++ ++NDLL +S+++ G + E V+L++ V+ ++ + + Sbjct: 417 LEVTQ---QETSRMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDK 473 Query: 684 IL------IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 I+ + + D + Q+ NI++NAI ++P GG I + T N V Sbjct: 474 NKEKKKYTIKRELGSQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRMTQNQNH-V 532 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 IL + D G+G+ +L K F ++ ++ GTGLGL +AK +V+A+ GK + S+ Sbjct: 533 ILSISDQGLGIPRKDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGKIWADSS 592 Query: 798 PAKGTLIEIIFP 809 KG+ I P Sbjct: 593 EGKGSTFYISLP 604 >gi|83643211|ref|YP_431646.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83631254|gb|ABC27221.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 893 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 128/240 (53%), Gaps = 10/240 (4%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H K A+ + KS+FLA +SHEIRTP+ A+IG++E+++ G + + + Y + I + Sbjct: 383 HLAKAADSANKAKSEFLANMSHEIRTPMNAVIGYTELLE----GLIHDAKQKSYLDAIKK 438 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 +L I+ND+LD+SK+ESGK+ + + P+ + + + ++K++ +R + Sbjct: 439 GSRALLTIINDILDLSKVESGKLRIEYAPLDPHRLLQDVAQIFSARISQKKLDLRIVLDD 498 Query: 693 NIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-----SNEEVILRVRDTGV 746 +P L D ++Q+ N++ NAI FT G + + + + E+ + V D+G+ Sbjct: 499 QLPHSLVLDEVRLRQVIFNLVGNAIKFTHEGYISLCAKASSIPGDDDHIELEIAVEDSGI 558 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ + + F Q + GTGLGL ++K +V+ G+ + S KG+ EI Sbjct: 559 GIAQDQQARIFNAFEQHEGQSNRQYGGTGLGLAISKKLVEMMNGEIGLKSELGKGSRFEI 618 >gi|16330477|ref|NP_441205.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] gi|1652968|dbj|BAA17885.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] Length = 1014 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 106/368 (28%), Positives = 175/368 (47%), Gaps = 49/368 (13%) Query: 464 GIAIINREGIILSTNRAVSKLF--GYPVEDILRKPFTV------------------FLEQ 503 G+ + + +G I+ N ++LF G+P + +L K T FL Sbjct: 175 GVLMTDAQGTIVVVNPEFARLFNLGFPADLLLGKNLTAIAPRINGLISHGQGVTHNFLAI 234 Query: 504 NTPSVMNHYLTEILSLDLRQTLEK----ITLGSTKEEKLLSLRIII--KKLPFSSCYSLT 557 +P + L L+L+ + E+ I LG + + R I K++ SL Sbjct: 235 ESPEPL---LKVELALEDGRFFERDYVPIMLGDSSQGHFWLYRDISQRKQVEMIQGQSLE 291 Query: 558 M-----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 M ++E QE L A AE + KS+FLA +SHEIRTP+ AIIG + ++ + Sbjct: 292 MERRMRQQLAEQNQE---LVAATTAAEAANRSKSEFLATMSHEIRTPMNAIIGMTGLLLD 348 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 +Y +A I SG +L ++ND+LD SKIE+GK++L P L + + EA+ Sbjct: 349 TDL--TTQQKY--FAQTIRNSGETLLTLINDILDFSKIEAGKLDLEVYPFDLGQCLEEAL 404 Query: 673 SLVQLYANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 +V A +K + LIR P + D+ ++QI +N+LSNA+ FT GQ+ ++ Sbjct: 405 DVVVPSARQKSLTLIRRFLTPIPPNLQGDVTRLRQILVNLLSNAVKFT-EAGQVKVTVEV 463 Query: 732 TSNE------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 ++ ++ V+DTG+G+ + + + F Q +S R GTGLGL + + Sbjct: 464 VDHDAAKGEYQICFAVQDTGIGIAPNQQQALFQAFSQGNSSITRRFGGTGLGLAICVRLT 523 Query: 786 DANMGKFY 793 G + Sbjct: 524 ALMGGTIW 531 >gi|17231477|ref|NP_488025.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17133120|dbj|BAB75684.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 614 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/264 (31%), Positives = 133/264 (50%), Gaps = 11/264 (4%) Query: 561 ISEWKQEKNKLSHAKKIA-EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 ++E + + + A +I E+ S K +FLA VSHE+R+PL I+G+S +++ ++ Sbjct: 214 VTEERAQALERERAARIELERASRMKDEFLAIVSHELRSPLNGILGWSRLLRTRKL---- 269 Query: 620 NPRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 +P IE A I+R+ ++ DLLDIS+I G + L P L + A+ V+ Sbjct: 270 SPEKIEQALESIERNAQAQTQLIEDLLDISRIIRGNIRLLVRPTKLIPVIQAALDTVRPI 329 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 AN K I I + +I + AD ++Q+ N+LSNA+ FTP GG++ I V Sbjct: 330 ANTKSIQIISRLNFDIGLVSADPERLQQVIWNLLSNAVKFTPEGGRVEICLEQVET-NVQ 388 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-T 797 ++V DTG G++ L F Q + G GLGL + + +V+ + GK + S Sbjct: 389 IQVIDTGTGISPEFLPYVFDRFRQADATTTRNQGGLGLGLAIVRNLVELHNGKVSVASPG 448 Query: 798 PAKGTLIEIIFPL---YDTSHPHD 818 +G + PL Y T P + Sbjct: 449 EGQGATFTVQLPLLATYSTLTPEE 472 >gi|319650573|ref|ZP_08004713.1| sensor protein [Bacillus sp. 2_A_57_CT2] gi|317397754|gb|EFV78452.1| sensor protein [Bacillus sp. 2_A_57_CT2] Length = 481 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 93/355 (26%), Positives = 174/355 (49%), Gaps = 29/355 (8%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++E + D I ++ ++GI N KLFG+ +++++ ++ + S ++ +L Sbjct: 154 LVEFSKDTIGMVTQKGIWTYINNEGKKLFGFTSIKEMIGTSLHDYIPPSEHSTLDDFLQT 213 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 LS++ L + T G T++ ++ ++I Y + + D++ K+ + KL +A+ Sbjct: 214 KLSVNFELNLIR-TDGQTRKAEV---QLIPTTFKNRKVYQIIIKDVTGQKKTEEKLQNAE 269 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 K+ S A ++HEIR PLTAI GF++++ + G ++A I Sbjct: 270 KL-----SVVGQLAAGIAHEIRNPLTAIKGFTQLLYEEHKG--------DFAEVILSELE 316 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 + IVNDLL ++K + +M E L V I+L+ A + I+I + + Sbjct: 317 RIEGIVNDLLVLAKPQITEM----EETCLTNVVKSVITLLNSQAVMENIVIELTQSPGEF 372 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 + + +KQ+ +NI+ N+I P+GG+I + + VI+ V D G+G+ L K Sbjct: 373 YVKCEKDKIKQVLINIIKNSIEAMPAGGKINVDIRQ-EDHSVIISVEDEGIGIPEERLAK 431 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +PF + +GTGLG+ + K ++ + G YI S +GT + I PL Sbjct: 432 LGEPF------YSTKEKGTGLGIMICKKIIKNHGGNLYIHSRENEGTTVRITLPL 480 >gi|238764141|ref|ZP_04625095.1| Signal transduction histidine-protein kinase atoS [Yersinia kristensenii ATCC 33638] gi|238697678|gb|EEP90441.1| Signal transduction histidine-protein kinase atoS [Yersinia kristensenii ATCC 33638] Length = 624 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 93/363 (25%), Positives = 175/363 (48%), Gaps = 38/363 (10%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ---NTPSVMNHYL 513 ILE+ +DG+ ++ G + N A + GY ++++ KP+ E+ ++P + Y Sbjct: 283 ILESAADGVISVDINGCVTMINPAGELITGYNRKELMGKPYAEVFEKIDFDSPVLDTLY- 341 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH------DISEWKQE 567 + +E + L K ++++ I + T+ D++ K+ Sbjct: 342 ---------RGIEHVALELDYPGKNRTIQLSISTSQLRNAQGDTLGALAIFTDLTAKKEV 392 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + ++ A+++A + +A V+HE+R PLTAI GF +++K+ +P+ +EY Sbjct: 393 QRRIEQAERLATL-----GELMAGVAHEVRNPLTAISGFVQILKDSE----KDPQRLEYT 443 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + I + + ++ LLD S+ G+ + V+L++ + E++ LV+ E R+ Sbjct: 444 HIILKEVQSINRVIQQLLDFSRPRIGR----YHQVNLNQILRESLILVKTKGVEARVDFH 499 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 N+ I AD +KQ+ LNIL NA+ + G+IIIST + + V+D G G Sbjct: 500 VQLDENLSDIEADGELLKQVLLNILINAVQSITARGEIIISTQTLDDNYQQITVKDNGCG 559 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + K PF + GTGLGL +++ ++ ++ G + S P KGT II Sbjct: 560 IADDIKSKVFDPF------YTTKPSGTGLGLSISQRIIASHDGDIRLESQPNKGTTFIII 613 Query: 808 FPL 810 P+ Sbjct: 614 LPV 616 >gi|116668684|ref|YP_829617.1| multi-sensor signal transduction histidine kinase [Arthrobacter sp. FB24] gi|116608793|gb|ABK01517.1| multi-sensor signal transduction histidine kinase [Arthrobacter sp. FB24] Length = 566 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 120/230 (52%), Gaps = 5/230 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K+DFLA V+HE+RTPLT+I + ++I++ GP+ P + I R+ + ++ D+ Sbjct: 335 KTDFLATVNHELRTPLTSISAYLDMIQDGVGGPV-PPEVSRMLDIIVRNSERLRRLIEDM 393 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 L +S+ + NLH PV L + ++ A + I + P I+AD + Sbjct: 394 LTVSRQDYDGANLHLGPVQLGHTLQIVTVALRPLAELGDVSISLELCDGDPAIIADEVQL 453 Query: 705 KQIALNILSNAIHFTPSGGQIIIST---THTSNEEVI-LRVRDTGVGMTNYELEKAMKPF 760 +Q+ N++SNAI FTP GG+I++S T E + + VRDTGVG+ E+ F Sbjct: 454 EQVFTNLVSNAIKFTPRGGRIVVSCRFQAMTDGEPGVNVHVRDTGVGIPEEEIPHLFTRF 513 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + N+ G+GLGL +A +V ++ G + S GT I + P+ Sbjct: 514 FRASNATSTAVPGSGLGLAIAHDIVKSHRGYLAVSSELGAGTTITVQLPV 563 >gi|53715746|ref|YP_101738.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|60683680|ref|YP_213824.1| two-component sensor histidine kinase [Bacteroides fragilis NCTC 9343] gi|253566441|ref|ZP_04843894.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|265767312|ref|ZP_06094978.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|52218611|dbj|BAD51204.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|60495114|emb|CAH09933.1| putative two-component sensor histidine kinase with PAS domain [Bacteroides fragilis NCTC 9343] gi|251944613|gb|EES85088.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|263252617|gb|EEZ24129.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|301165192|emb|CBW24762.1| putative two-component sensor histidine kinase with PAS domain [Bacteroides fragilis 638R] Length = 522 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/253 (30%), Positives = 135/253 (53%), Gaps = 15/253 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K+ + +L A+ AE+ KS FLA +SHEIRTPL AI+GFS++I Sbjct: 281 DVTEIKKTEKELIAARIKAEEADRMKSSFLANMSHEIRTPLNAIVGFSKLIIEAD----N 336 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +YA+ ++ + ++L++ ND+LD+S +E+G + L + PV L + + L +L+ Sbjct: 337 ECEKRQYADIVEHNSTVLLNLFNDILDLSALEAGSLELSYHPVRLKDI---CLQLYELHV 393 Query: 680 NEKRILIRTSF--ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 + +R ++ I D + Q+ +N+++NAI FT S G+I ++ V Sbjct: 394 KSVKPEVRLVLDEVDSQLCIQGDWERISQVLVNLITNAIKFT-SVGEIHFGFQKKAD-MV 451 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + DTG G+ + + FG+I + Q GTGLGL + + +V+ G+ ++ S Sbjct: 452 QFYMSDTGKGIPAERVATIFQRFGKIDDFVQ----GTGLGLTICRMLVEKMGGRIWVRSK 507 Query: 798 PAKGTLIEIIFPL 810 +GT+ P+ Sbjct: 508 QGEGTVFYFTLPM 520 >gi|269967900|ref|ZP_06181941.1| hypothetical protein VMC_33710 [Vibrio alginolyticus 40B] gi|269827498|gb|EEZ81791.1| hypothetical protein VMC_33710 [Vibrio alginolyticus 40B] Length = 566 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 118/237 (49%), Gaps = 7/237 (2%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 +K AE+ +F+A ++HE+RTPL ++G +E++ + +Y + + +SG Sbjct: 195 RKRAEESEKATKEFVAMINHELRTPLNGVLGSAELLSRTQL----EEEQRQYLSNLTQSG 250 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L+ I+NDLLD SK+ +G M + + + +E + + A EKRI I Sbjct: 251 DLLRVIINDLLDFSKMNAGMMEIIHKVFAWEELEKAIMGVFAAKAAEKRIHFSIDKKLGI 310 Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 P L DL + QI +N++ NAI FT GG ++ N V DTG+G+ Sbjct: 311 PEFLVGDLERITQILVNLVGNAIKFTHLGG--VVLRVEWLNGTAYFEVEDTGIGIPIKAQ 368 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 PF Q+ S + EG+GLGL + K +VD G+ S KGT ++ PL Sbjct: 369 PSLFDPFVQVDRSAKRSFEGSGLGLAICKNLVDLMQGQISFESEERKGTTFKVAIPL 425 >gi|238785704|ref|ZP_04629679.1| Sensor kinase protein rcsC [Yersinia bercovieri ATCC 43970] gi|238713389|gb|EEQ05426.1| Sensor kinase protein rcsC [Yersinia bercovieri ATCC 43970] Length = 965 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/256 (32%), Positives = 132/256 (51%), Gaps = 7/256 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 453 VLVDVSSRVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL- 511 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P G R + N S L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 512 PHGVDRLVTAMN---NSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHISANYL 568 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +KR+ + +PR++ D ++Q+ N+L+NAI FT +G II + Sbjct: 569 PLVVKKRLGLYCFIEPEVPRVMMGDPVRLQQVISNLLNNAIKFTDTG--CIILQVRVRGD 626 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + RVRDTGVG+ + E+ + PF Q+ Q +GTGLGL + + +V+ G + Sbjct: 627 YLEFRVRDTGVGINSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVI 686 Query: 796 STPAKGTLIEIIFPLY 811 S G++ I PL+ Sbjct: 687 SELGMGSIFAIRIPLF 702 >gi|228914596|ref|ZP_04078205.1| hypothetical protein bthur0012_18260 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228933304|ref|ZP_04096160.1| hypothetical protein bthur0009_17710 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826465|gb|EEM72242.1| hypothetical protein bthur0009_17710 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228844915|gb|EEM89957.1| hypothetical protein bthur0012_18260 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 444 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 125/251 (49%), Gaps = 13/251 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E + + L+H EK K++F+A +SHEIRTPLT I G+SE +K L Sbjct: 205 GELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKT--VDHLTEE 262 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + I + ++ +V +LLD S+++S NL+ + V L + + E I + A E Sbjct: 263 EIKQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEE 322 Query: 682 KRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K++ F I RI + D +KQI LNI+ NAI ++ G++ I T + VI Sbjct: 323 KKM----QFIKTIERIELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVI- 377 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 +V+D G+G+ L + F QI N G GLGL + K MV+ + G I S Sbjct: 378 KVKDDGIGIAKEHLPYIEQSFYQINN----HATGAGLGLAIVKKMVELHGGTINIISKEG 433 Query: 800 KGTLIEIIFPL 810 GT I I PL Sbjct: 434 IGTTILIKLPL 444 >gi|192361265|ref|YP_001984106.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain-containing protein protein [Cellvibrio japonicus Ueda107] gi|190687430|gb|ACE85108.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein protein [Cellvibrio japonicus Ueda107] Length = 1260 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 88/256 (34%), Positives = 137/256 (53%), Gaps = 10/256 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KNQRF 615 M DIS K+ + +LS AK+ AE+ + KS FLA +SHEIRTPL A++G+++++ ++ + Sbjct: 782 VMTDISAQKETEAELSQAKEAAEEAARAKSRFLANMSHEIRTPLNAVLGYTQLLMRDPQL 841 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GN R E I + +L ++ND+LD+SKIESG +NL + L + + E +++ Sbjct: 842 A--GNQR--ERLQLILNASQRLLGLINDVLDLSKIESGALNLRQDYFDLHQEMQEIHAII 897 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 AN K + + P I+ D + + QI LN+L NA+ FT G ++ T H Sbjct: 898 AERANAKGLSLGLEIDFPAPNIVRGDRQKLGQILLNLLGNAVKFTHQGSVNLMLTRH--G 955 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + V + DTG G+ ELE+ F Q Q GTGLGL L++ + G + Sbjct: 956 DWVDFVISDTGPGIAPQELEQLFSAFRQGQAGQD--SGGTGLGLTLSRHLAQGMGGSLEL 1013 Query: 795 FSTPAKGTLIEIIFPL 810 S +GT + PL Sbjct: 1014 TSQLGEGTRAHLRLPL 1029 >gi|89075083|ref|ZP_01161524.1| putative sensor histidine kinase/response regulator [Photobacterium sp. SKA34] gi|89049170|gb|EAR54735.1| putative sensor histidine kinase/response regulator [Photobacterium sp. SKA34] Length = 929 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/251 (30%), Positives = 131/251 (52%), Gaps = 8/251 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + + N +Y Sbjct: 275 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTKL----NTSQKDYLLT 330 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+ S N +L I+ND+LD SK+E+GK+ L P +++ E + L+ A+EK + + Sbjct: 331 IENSANNLLTIINDILDFSKLEAGKLLLENIPFDFTDSLDEVMRLLAPSAHEKGLELTLK 390 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTG 745 + IP ++ D ++Q+ N++ NA+ FT G + + + +N + VRDTG Sbjct: 391 IDDRIPAGLIGDPLRIQQVVTNLIGNAVKFTEHGNIDVSVELKSDVDNNIALQFMVRDTG 450 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEVSLTSRLHQGSTFW 510 Query: 806 IIFPLYDTSHP 816 + T P Sbjct: 511 FTIQMNKTDLP 521 >gi|304311694|ref|YP_003811292.1| hypothetical protein HDN1F_20640 [gamma proteobacterium HdN1] gi|301797427|emb|CBL45647.1| Hypothetical protein HDN1F_20640 [gamma proteobacterium HdN1] Length = 1000 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 128/246 (52%), Gaps = 6/246 (2%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E +E +KL K++A ++ K DFLA +SHE+RTPLTAIIG+SE + +Q Sbjct: 604 AEQDREIDKLE--KELATASATAKGDFLANMSHELRTPLTAIIGYSESLNDQSLSATDEQ 661 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + + + I RS + +L+I+ND+LD SK+E+ + + P++ + + S A Sbjct: 662 QAV---DTIIRSSHHLLNIINDILDFSKVEASIVEVENVPLNPYLLLKDVYSYFTQKARS 718 Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + + + +P RI AD +KQI LN+ SNA+ FT G I + Sbjct: 719 QNLAFEVVYHFPLPNRIHADPTRLKQILLNLCSNALKFTKEGSVTIDVGWDEERKLTRFS 778 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG G++ ++ K + + Q S + GTGLGL ++K + + G + S P K Sbjct: 779 VIDTGAGLSEEQIGKLFQSYAQAEASTARQFGGTGLGLVISKQLAEKMGGTIEVTSEPGK 838 Query: 801 GTLIEI 806 G+ + Sbjct: 839 GSCFTV 844 >gi|254445328|ref|ZP_05058804.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198259636|gb|EDY83944.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 979 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 127/234 (54%), Gaps = 9/234 (3%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK+ AE + KS+FLA +SHEIRTPL +++G+S+++K+ PL N + + I Sbjct: 455 AKERAEAANQAKSEFLAVISHEIRTPLQSVLGYSDLLKST---PL-NEKQRSCLDTIQSE 510 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G ++L IV D+LD S + L + PV L + E ++ A+ K + A Sbjct: 511 GKILLRIVQDILDFSNLRKANFELEYGPVRLRRLIEETFRTIKPMADRKGLKASLEIAAK 570 Query: 694 IPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--EEVILR--VRDTGVGM 748 +P ++ +D ++Q+ LN+ N++ +T G ++ + N EE+ L+ + DTGVG+ Sbjct: 571 VPELVQSDGVRLRQVLLNLFGNSVKYTEEGEVLLKAYFEKGNAGEELPLKFEILDTGVGI 630 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +L + +PF Q+ +S + EG GLGL + +V+ G+ + S KG+ Sbjct: 631 KEADLGRLFEPFIQLEHSSKFPREGAGLGLAIVNRIVELMGGRIDVESEVGKGS 684 >gi|298530358|ref|ZP_07017760.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509732|gb|EFI33636.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1150 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 91/289 (31%), Positives = 149/289 (51%), Gaps = 47/289 (16%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 ++ + DI+E ++ + +L AK+ AE S KS FLA +SHEIRTP+ AI+GF++++ + Sbjct: 654 FAASFIDITELEKTRRELVRAKEAAEAASQAKSTFLANMSHEIRTPMNAILGFAQIL--E 711 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM-------NLH--FEPVSL 664 R LG P + + I R+ + +L I+ND+LD+S+IE+G++ NLH FE + L Sbjct: 712 RDSTLG-PDHARHVQSISRNADHLLSILNDILDMSRIEAGQIEHNPRDFNLHQTFEDLEL 770 Query: 665 ---DEAVSEAISLVQLYANEKRILIRTSFANN--IPRIL-ADLRSVKQIALNILSNAIHF 718 AVS+ + L +F N +PR AD ++QI +N+L NA F Sbjct: 771 MFIPRAVSKGLEL--------------TFEKNGSLPRAGHADPGMLRQIMVNLLGNACKF 816 Query: 719 TPSGGQIIISTTHTSNEEVI----------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 T S G++ + N E ++V+D+G G+ E+++ PF Q + Sbjct: 817 T-SQGEVTFRISAEKNSEACGTGQGGFTLNVQVQDSGPGIDPEEMDRIFDPFHQ---GGR 872 Query: 769 IRGE-GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 GE GTGLGL +++ G + KG+L + P+ + P Sbjct: 873 DPGEGGTGLGLHISRKYARIMGGDLSVSPHTEKGSLFCLQVPVQQATRP 921 >gi|323694952|ref|ZP_08109102.1| sensor protein [Clostridium symbiosum WAL-14673] gi|323501042|gb|EGB16954.1| sensor protein [Clostridium symbiosum WAL-14673] Length = 1032 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 131/255 (51%), Gaps = 20/255 (7%) Query: 564 WKQEKNK-LSHAKKI---------AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 W +E+ + L+ KI A+ S K+DFL+R+SHEIRTP+ AI+G + + ++ Sbjct: 621 WTKEQRRVLAEIGKIVPSFVMKARADAVSQAKTDFLSRMSHEIRTPMNAIVGMTAIARS- 679 Query: 614 RFGPLGNP-RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 GN + ++ +D S +L +VND+LD+S+IESGKM L+ P+ L +S Sbjct: 680 ---AAGNKEQVLKCLEKLDNSSKYLLHLVNDILDMSRIESGKMELNPTPMLLSSFLSSID 736 Query: 673 SLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 +V++ A K + R L AD ++Q+ LN++ NAI FT GG I + Sbjct: 737 EMVRMQAEAKGLSFTIQNDCRTERHLTADQLRLEQVLLNLIGNAIKFTDVGGSITLHIHP 796 Query: 732 TSNEEVILRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 E+ L +R DTG+G++ L F Q + + GTGLGL ++ +V Sbjct: 797 VKEEDTGLALRFSLADTGIGISPEVLPSIFNAFEQGAKNISSQYGGTGLGLAISSRLVQM 856 Query: 788 NMGKFYIFSTPAKGT 802 G + S P +G+ Sbjct: 857 MGGVLDVKSEPGRGS 871 >gi|213609422|ref|ZP_03369248.1| hybrid sensory histidine kinase TorS [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 758 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/247 (34%), Positives = 129/247 (52%), Gaps = 19/247 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK + KS FLA +SHEIRTPL I+G +++ ++ PL Y + I+ Sbjct: 280 QARAEAEKANEAKSTFLAAMSHEIRTPLYGILGTVQLLADK---PL-MANYRDDLQAIND 335 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHF--EPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG +L I+ND+LD S IE G N+ EP + ++ A+ L+ + ++ + T F Sbjct: 336 SGESLLAILNDILDYSAIEVGGTNVSISEEPFEPRQLLNSALHLMH---SRVQVALITDF 392 Query: 691 ANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 + +P L D R ++QI +N+LSNA FT G I+ T ++ + V DTG G+ Sbjct: 393 SEQLPSTLQGDPRRIRQIVINLLSNAAKFTDRGS--IVLRTFCDDQSWFIEVEDTGCGIP 450 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L KPF Q RG GTGLGL ++ ++ +A G + ST G+ + P Sbjct: 451 EAKLTAIFKPFVQATGC---RG-GTGLGLAISASLAEAMGGTLTVTSTLHVGSCFRLQLP 506 Query: 810 LYDTSHP 816 + HP Sbjct: 507 V---RHP 510 >gi|52082612|ref|YP_081403.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC 14580] gi|52788010|ref|YP_093839.1| YycG [Bacillus licheniformis ATCC 14580] gi|319648477|ref|ZP_08002693.1| sensor protein [Bacillus sp. BT1B_CT2] gi|52005823|gb|AAU25765.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC 14580] gi|52350512|gb|AAU43146.1| YycG [Bacillus licheniformis ATCC 14580] gi|317389556|gb|EFV70367.1| sensor protein [Bacillus sp. BT1B_CT2] Length = 614 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 102/372 (27%), Positives = 167/372 (44%), Gaps = 41/372 (11%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E E +L S++ +DG+ NR G I+ N +L E L P T L Sbjct: 262 EGERKKLSSVIAYMTDGVIATNRNGAIILLNTPALELLNVSRETALEMPITSLL-----G 316 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYSLTMHDISE 563 + + Y E DL + + + L +EE+ LR+ I K+ ++D++E Sbjct: 317 LEDEYTFE----DLVEQQDSLLLEIEQEERTSVLRVNFSVIQKEHGKIDGLIAVIYDVTE 372 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGNPR 622 E+ + +F+A VSHE+RTPLT + + E + + P PR Sbjct: 373 --------------QEQIDQERREFVANVSHELRTPLTTMRSYLEALAEGAWQDPNIAPR 418 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 ++ N ++ +VNDLL +SK +S + E + S I ++ + Sbjct: 419 FL---NVTQNETERMIRLVNDLLQLSKFDSKDYQFNKEWIHFIRFFSLIIERFEMTKEQ- 474 Query: 683 RILIRTSFANNIP----RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 F +N+P + D + Q+ NI+SNA+ ++P GG I S EE++ Sbjct: 475 ----HVEFISNLPDRELYVEIDPDKITQVLDNIISNALKYSPEGGHITFSVDVNEEEELL 530 Query: 739 -LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V+D GVG+ ++EK + F ++ ++ R GTGLGL +AK MV A+ G + S Sbjct: 531 YVSVKDEGVGIPRKDVEKIFERFYRVDKARTRRLGGTGLGLAIAKEMVQAHSGDIWADSI 590 Query: 798 PAKGTLIEIIFP 809 KGT I P Sbjct: 591 EGKGTTITFTLP 602 >gi|73538299|ref|YP_298666.1| PAS [Ralstonia eutropha JMP134] gi|72121636|gb|AAZ63822.1| PAS [Ralstonia eutropha JMP134] Length = 679 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 122/236 (51%), Gaps = 9/236 (3%) Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 S FLA VSHEIRTP+ A+ G E+ + P R + A+ S +L +++D+L Sbjct: 255 STFLASVSHEIRTPMNAVAGMIELALKRPEMPSDERRMLSTAHD---SALALLALIDDIL 311 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSV 704 D+SK+E+GK+ +H P SL V E + ++ A +K + + I + D V Sbjct: 312 DLSKMEAGKLRVHPVPASLPALVEEVLQMLGPVAAQKPLPLVPVVDPGIAAAHMVDPLRV 371 Query: 705 KQIALNILSNAIHFTPSGGQIII----STTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 KQ+ N++SNAI FT G++ + H +E++L V DTG+G+ + + + +PF Sbjct: 372 KQVLGNLVSNAIRFT-DKGEVRVHLHGGPVHAGKQEIVLTVADTGIGIAHADQARLFQPF 430 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 Q + + + GTGLGL + + +V A G+ + S GT + + L P Sbjct: 431 EQAHDRSRPQSGGTGLGLAICRRLVAAMGGQIRLESRAGAGTSVRVTLRLRTACLP 486 >gi|117922447|ref|YP_871639.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3] gi|117614779|gb|ABK50233.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3] Length = 1626 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 140/261 (53%), Gaps = 12/261 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ +Q + L +AK+ A+ ++ KS FLA +SHEIRTP+ A++G ++++ + Sbjct: 875 DITAQRQLEKTLRNAKQEADTANAAKSAFLANMSHEIRTPMNAVLGMLQLMQYTAL-SVQ 933 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 Y+ A +S +L ++ND+LD SKI++GK+ L P S++ + + ++ Sbjct: 934 QQGYVTKAQTAAKS---LLGLLNDILDFSKIDAGKLKLDLHPCSIELLMRDLAVVLSANH 990 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 + + + +P +LAD ++QI +N+ NA+ FTP GQ+I+ +E Sbjct: 991 GNSDVEVMFDLDSALPAWLLADQLRLQQILINLAGNALKFTPH-GQVIVGLECLRHEAES 1049 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V + D+G+G++ ++E+ F Q +S R GTGLGL ++K +V+ G+ + Sbjct: 1050 VTVQFSIVDSGIGISEEQIERIFTGFEQAESSTSRRFGGTGLGLAISKRLVELMGGQLQV 1109 Query: 795 FSTPAKGT--LIEIIFPLYDT 813 S G+ ++ FP+ + Sbjct: 1110 TSKVGVGSRFWFDLTFPVMEV 1130 >gi|300931435|ref|ZP_07146764.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 187-1] gi|300460805|gb|EFK24298.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 187-1] gi|323973080|gb|EGB68274.1| hsp90-like protein [Escherichia coli TA007] Length = 593 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 188/398 (47%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 214 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 273 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 274 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 326 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 327 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 381 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q P+ + EY + + + + + ++ LL+ S+ Sbjct: 382 AHEVRNPLTAIRGYVQILRQQTSDPI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 437 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 438 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL 493 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 494 INAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFF------TTKAS 547 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 548 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 585 >gi|228945617|ref|ZP_04107967.1| hypothetical protein bthur0007_17770 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814135|gb|EEM60406.1| hypothetical protein bthur0007_17770 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 444 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 125/251 (49%), Gaps = 13/251 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E + + L+H EK K++F+A +SHEIRTPLT I G+SE +K L Sbjct: 205 GELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKT--VDHLTEE 262 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + I + ++ +V +LLD S+++S NL+ + V L + + E I + A E Sbjct: 263 EIKQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEE 322 Query: 682 KRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K++ F I RI + D +KQI LNI+ NAI ++ G++ I T + VI Sbjct: 323 KKM----QFIKTIERIELIGDRNRLKQIFLNIVQNAIKYSHENGKVYIEATKNEGQAVI- 377 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 +V+D G+G+ L + F QI N G GLGL + K MV+ + G I S Sbjct: 378 KVKDDGIGIAKEHLPYIEQSFYQINN----HATGAGLGLAIVKKMVELHGGTINIISKEG 433 Query: 800 KGTLIEIIFPL 810 GT I I PL Sbjct: 434 IGTTILIKLPL 444 >gi|157961260|ref|YP_001501294.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] gi|157846260|gb|ABV86759.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] Length = 1186 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 95/363 (26%), Positives = 171/363 (47%), Gaps = 25/363 (6%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL----EQNT-PSV 508 L + LE + D + I+ G I N A LF + E ++ + L E++ ++ Sbjct: 361 LLATLEGSKDALVTIDTSGAIQEVNDAACLLFKFHSEQMIGQRLEEVLFRADERDCFHNI 420 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568 + Y L ++ + + S E+ + L +I +L + + DIS + + Sbjct: 421 LEEYRATGEGLAVKHSTQMKATRSDGEKVAIELTLIPVQLGQEMLLTAFIRDISRRMEYE 480 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI------KNQRFGPLGNPR 622 +L AK+ AE+ S KS FLA +SHEIR+PL A++G E+I K QR Sbjct: 481 TQLKLAKEQAEQGSEAKSRFLATMSHEIRSPLNAVLGSVELILESTLNKEQRI------- 533 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 YA+ +G +L +ND+LD SKIE+G++ L S + ++ + ++ A +K Sbjct: 534 ---YADTAKEAGTALLSTINDILDFSKIEAGQIVLEESAFSPAKLATQVLQVLSPKAQDK 590 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL-- 739 I + N+P ++ D + ++Q+ N++ NAI F+ GG + I +E L Sbjct: 591 GIALAIYVNRNVPESLIGDGQRLRQVLHNLVDNAIKFS-FGGCVAIEMWLADVDEARLCC 649 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 ++ D G+G++ + F Q+ ++ GTGLGL + ++ G + S Sbjct: 650 KISDQGIGISEESQLTLFEEFSQVHDTHNTNYSGTGLGLAICAELIAQMGGHIGVDSQQG 709 Query: 800 KGT 802 +G+ Sbjct: 710 QGS 712 Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust. Identities = 26/99 (26%), Positives = 53/99 (53%), Gaps = 2/99 (2%) Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 ++L +IL+ DG +++ +G+I N AVS+LFGY +++ + ++ + N ++ + Sbjct: 231 VRLNAILQTAVDGFVVVDTQGVIEEVNPAVSRLFGYSPSELIGRNVSLLMPSNERNMHDE 290 Query: 512 YLTEILSLDLRQTLEKI--TLGSTKEEKLLSLRIIIKKL 548 Y+ L +T+ K L K+ L S+ + I K+ Sbjct: 291 YIQHYLKSADDKTVGKGRELLAQKKDGSLFSIELSISKM 329 >gi|256004999|ref|ZP_05429971.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum DSM 2360] gi|255991068|gb|EEU01178.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum DSM 2360] Length = 1105 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 124/232 (53%), Gaps = 3/232 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 EK + ++S+FLA +SHE+RTPL +II S+++ ++ + + +E I+++G +L Sbjct: 532 EKVNKYRSEFLANMSHELRTPLNSIILLSKMLARKKINEF-DEKDMEKIEVINKAGQELL 590 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++ND+LD+SK+ESGKMNL+ E + + + + A EK I + N ++ Sbjct: 591 RLINDVLDLSKVESGKMNLNIFTFHSSELMEDLRQMFESSAKEKNISFFVEDSIN-SMLV 649 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAM 757 D + QI N LSNA FT G I+ + E +VI V DTG+G+ + Sbjct: 650 GDRDKISQILRNFLSNAFKFTSEGSVILKAEMDKDRENDVIFSVTDTGIGIPEEHISDIF 709 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q+ + + GTGLGL ++K + D G+ + S +G+ + P Sbjct: 710 QEFRQVDGTISRKYGGTGLGLSISKKLADLMKGEIEVRSKIGEGSTFFLKLP 761 >gi|281417008|ref|ZP_06248028.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum JW20] gi|281408410|gb|EFB38668.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum JW20] Length = 1160 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 124/232 (53%), Gaps = 3/232 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 EK + ++S+FLA +SHE+RTPL +II S+++ ++ + + +E I+++G +L Sbjct: 532 EKVNKYRSEFLANMSHELRTPLNSIILLSKMLARKKINEF-DEKDMEKIEVINKAGQELL 590 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++ND+LD+SK+ESGKMNL+ E + + + + A EK I + N ++ Sbjct: 591 RLINDVLDLSKVESGKMNLNIFTFHSSELMEDLRQMFESSAKEKNISFFVEDSIN-SMLV 649 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAM 757 D + QI N LSNA FT G I+ + E +VI V DTG+G+ + Sbjct: 650 GDRDKISQILRNFLSNAFKFTSEGSVILKAEMDKDRENDVIFSVTDTGIGIPEEHISDIF 709 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q+ + + GTGLGL ++K + D G+ + S +G+ + P Sbjct: 710 QEFRQVDGTISRKYGGTGLGLSISKKLADLMKGEIEVRSKIGEGSTFFLKLP 761 >gi|167746930|ref|ZP_02419057.1| hypothetical protein ANACAC_01642 [Anaerostipes caccae DSM 14662] gi|167653890|gb|EDR98019.1| hypothetical protein ANACAC_01642 [Anaerostipes caccae DSM 14662] Length = 812 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/265 (28%), Positives = 136/265 (51%), Gaps = 13/265 (4%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E +++K L A + A ++ K++FL+ +SH+IRTP+ AI+G + + + P + Sbjct: 280 EQERQKTALQDAYQAARVANAAKTNFLSSMSHDIRTPMNAIMGMAAIAQANLECP---DK 336 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + N I+ S +L ++N++LD+SKIESGK+N+ E +SL + + + + N K Sbjct: 337 IQDCLNKINTSSRHLLSLINEVLDMSKIESGKINISLEQISLPDMIGAVMDMCLPLINGK 396 Query: 683 RILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-------SN 734 + S + N ++AD ++Q+ +N++SNA+ +TP GG I + S Sbjct: 397 HQQFQMSIGHVNHEHVIADGDRLRQVLMNLISNAVKYTPEGGTITLRINEQYSPNPKKSQ 456 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E I DTG+G++ L +PF + +S+ + +GTGLG+ + + +V G + Sbjct: 457 YEFI--CIDTGIGISEEFLPHIFEPFSRAEDSRISKIQGTGLGMAITENIVRMMNGTISV 514 Query: 795 FSTPAKGTLIEIIFPLYDTSHPHDC 819 S G+ + PL C Sbjct: 515 ESKIGTGSKFTVSVPLEICGEEEVC 539 >gi|160889867|ref|ZP_02070870.1| hypothetical protein BACUNI_02298 [Bacteroides uniformis ATCC 8492] gi|156860859|gb|EDO54290.1| hypothetical protein BACUNI_02298 [Bacteroides uniformis ATCC 8492] Length = 896 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 87/260 (33%), Positives = 126/260 (48%), Gaps = 21/260 (8%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQR 614 DI+E +Q K +L AK+ AE KS FLA +SHEIRTPL AI+GFS +I + +R Sbjct: 487 DITEMEQMKRELLVAKEKAETSDRLKSAFLANMSHEIRTPLNAIVGFSRIIAESTDEEER 546 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 G Y ++ + +L ++N++LD+SKIESG + PV L E Sbjct: 547 LG---------YYEIVESNNERLLQLINEILDLSKIESGIVEFTITPVRLHPLCKEIHDA 597 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 E LI NI I D + Q+ N++ NA FT SG I Sbjct: 598 HIFRCPEGVELIYEPSDENIV-IDGDKNRIFQVISNLIGNAFKFTTSGH--ISYGYRREG 654 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + V V DTG+G+ ++++ + F ++ N Q GTGLGL + K +++ G + Sbjct: 655 KYVAFHVTDTGMGIAPDKVDRVFERFVKVNNFAQ----GTGLGLSICKTIIERLGGNISV 710 Query: 795 FSTPAKGTLIEIIFPLYDTS 814 S KGT + PL TS Sbjct: 711 TSEVGKGTTFTFVLPLESTS 730 >gi|116199517|ref|XP_001225570.1| hypothetical protein CHGG_07914 [Chaetomium globosum CBS 148.51] gi|88179193|gb|EAQ86661.1| hypothetical protein CHGG_07914 [Chaetomium globosum CBS 148.51] Length = 2325 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 123/226 (54%), Gaps = 21/226 (9%) Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 K+AE + KS FLA VSHE+RTPL +IG SE++++ N +E A+ I S + Sbjct: 1818 KLAEDATKAKSIFLANVSHELRTPLNGVIGNSELLRDSNL----NKEQLEMADSIRVSAD 1873 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN--- 692 L+L ++ND+LD S++E+ KM L+ + +E V E + V Y+N + +TS N Sbjct: 1874 LLLTVINDILDFSRMEADKMKLYIIAFNPEEMVREVVRAVS-YSNRE----KTSKKNVKI 1928 Query: 693 ----NIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRD 743 N+P +L D + Q+ N++ N++ FT G I I N + V+D Sbjct: 1929 IQDINLPPMLIYGDPIRLHQVLGNLIGNSLKFTEDGSITIGARIDKETKENATLTFWVKD 1988 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 TG+G++ +LE +PF Q S + G+GLGL + K++++ M Sbjct: 1989 TGIGISAQQLENLFQPFSQADASTARKYGGSGLGLSICKSLIETMM 2034 >gi|148548845|ref|YP_001268947.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida F1] gi|148512903|gb|ABQ79763.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida F1] Length = 1210 Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 90/259 (34%), Positives = 137/259 (52%), Gaps = 14/259 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DISE +Q +L AK+ A+ + KS FLA +SHEIRTP+ A+IG E+ +K G + Sbjct: 686 DISERRQLVMELRQAKQQADDANRAKSTFLATISHEIRTPMNAVIGMLELAVKRADQGRV 745 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + +E A++ S +L ++ D+LDI +IESG ++L E V L V + Sbjct: 746 -DRSALELAHH---SAKDLLGLIGDILDIVRIESGHLSLAPEVVDLAALVESVARIFDGQ 801 Query: 679 ANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----HTS 733 A +K + + A +L D KQ+ N++SNAI FT GQ+ I + TS Sbjct: 802 ARQKGLALEVQIAPAARCHVLLDPLRFKQVLSNLVSNAIKFTEH-GQVRICVSLLDDGTS 860 Query: 734 NEEVI-LRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGK 791 V+ L VRD+G+G+ +L++ PF Q P+SQ R GTGLGL + + + + G Sbjct: 861 TPAVLELEVRDSGIGIHPDDLQRLFNPFIQANPHSQGARA-GTGLGLAICRNLCEMMGGS 919 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + S GT + + PL Sbjct: 920 LSMKSLEDVGTQVRLKMPL 938 >gi|317128536|ref|YP_004094818.1| multi-sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315473484|gb|ADU30087.1| multi-sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 597 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 93/374 (24%), Positives = 172/374 (45%), Gaps = 30/374 (8%) Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 ++T +N E E QL IL + +DG+ ++REG ++ TN ++ G + + + Sbjct: 245 LNTNLNALNQEKE--QLSRILSSMADGVITLDREGAVMVTNPPANEFIGAW---LYEQEY 299 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 V P + H DL EK +G + +++ Sbjct: 300 EVEESGELPRELQHL------FDLVVQEEKEQMGEVDVQ--------------GRSWAIL 339 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHK--SDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 M + + + + ++ + + E+ K DF+A VSHE+RTP++ + G+SE I + Sbjct: 340 MTPLYDQQHVRGAVAVLRDMTEERLHDKLRKDFIANVSHELRTPISMLQGYSEAIIDGIA 399 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 E A I + +VN+LLD++++E+G + L+ E +S + + Sbjct: 400 SS--EEEKTELAQIIYDESLRMGRLVNELLDLARMEAGHIQLNVETISFTDFTKRVLRKF 457 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 Q A E I + NI + AD ++Q+ N++ NAI TP GG++ + ++ Sbjct: 458 QGIAKEHGIKLSGDIEENIQYVYADEDRIEQVLTNLIDNAIRHTPEGGEVTLQ-MEVLDQ 516 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V + ++DTG+G++ +L + F + ++ GTGLGL + K +V+A+ GK + Sbjct: 517 GVKVNIQDTGIGISEEDLPFVFERFYKADKARTRGRAGTGLGLAIVKNIVEAHHGKVSVH 576 Query: 796 STPAKGTLIEIIFP 809 S +GT P Sbjct: 577 SKLNEGTTFSFFLP 590 >gi|260664970|ref|ZP_05865820.1| two-component system response regulatory system histidine kinase [Lactobacillus jensenii SJ-7A-US] gi|260561024|gb|EEX26998.1| two-component system response regulatory system histidine kinase [Lactobacillus jensenii SJ-7A-US] Length = 618 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 94/388 (24%), Positives = 184/388 (47%), Gaps = 36/388 (9%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 ++ + E E +L S+L +DG+ +R G ++ N+ ++ + KP T L Sbjct: 251 SQEQSESERRRLDSVLSHMTDGVIATDRHGNVIILNQMALSFLDIKEKEAVNKPITKIL- 309 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSSCYSLTMHD 560 + + + L + ++ + + G T +E +L S +I + F S +HD Sbjct: 310 ----GLADDVSAQELIGNQQEMMITVNEG-TPDEMILHASFSLIRRVTGFVSGAVCVLHD 364 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLG 619 ++E Q+KN+ + + F++ VSHE+RTPLT++ + E + + + P Sbjct: 365 VTE--QQKNE------------NEQRQFVSNVSHELRTPLTSLRAYIEALNDGAWKDPEI 410 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P+++E ++ ++NDLL +S+++ G + E V+ ++ +S ++ + Sbjct: 411 APQFLEVTQ---EETERMIRMINDLLSLSRMDRGVAKMDLEWVNFNDFLSHVLNRFDMIV 467 Query: 680 ---------NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 EK+ I+ N + D + Q+ NI++NAI ++P GG I + + Sbjct: 468 KKDAEKGQEGEKKYSIKRKITNQDLWVEIDTDQMMQVIDNIMNNAIKYSPDGGVITVGLS 527 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + N+ +IL + D G+G+ +L K F ++ ++ GTGLGL +AK +V+A+ G Sbjct: 528 QSQNQ-IILSISDQGLGIPKKDLNKIFDRFYRVDKARSREQGGTGLGLAIAKEIVEAHKG 586 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 + + S KG+ I P S D Sbjct: 587 RIWADSQEGKGSTFYISLPFEPMSEEDD 614 >gi|83648936|ref|YP_437371.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83636979|gb|ABC32946.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 890 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 80/255 (31%), Positives = 138/255 (54%), Gaps = 6/255 (2%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + +Q K + +A++ AE + KS FLA +SHEIRTP+TAI+G+SE ++ L Sbjct: 358 QARQAKEQALNAQRAAEVSEAAKSRFLANMSHEIRTPMTAILGYSESLRESN---LSREE 414 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 ++ + I RSG +L I+ND+LD+SKIE+ K+ + +SL + + S + + A+EK Sbjct: 415 RNQFIDIIVRSGRHLLTIINDILDLSKIEAEKIEIEHMQISLPNLIEDLRSHIGMRAHEK 474 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LR 740 + + + +P +D +KQI N+ +NA FT G I ++ + ++ Sbjct: 475 GLTLDITPKLPLPAHFESDPTRLKQILFNLGANATKFTHK-GSIHFGVSYEKDTNLLRFT 533 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+G+ EL+K +PF Q +S + GTGLGL +++ + G+ + S+ + Sbjct: 534 VTDTGIGLGPGELKKIFEPFVQADSSTTRQYGGTGLGLYISRQLAHMLGGELTVDSSQGE 593 Query: 801 GTLIEIIFPLYDTSH 815 G+ + D S Sbjct: 594 GSRFSVTINAGDLSQ 608 >gi|119356709|ref|YP_911353.1| multi-sensor signal transduction histidine kinase [Chlorobium phaeobacteroides DSM 266] gi|119354058|gb|ABL64929.1| multi-sensor signal transduction histidine kinase [Chlorobium phaeobacteroides DSM 266] Length = 590 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 92/359 (25%), Positives = 176/359 (49%), Gaps = 27/359 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++L + I + N +G I+ N A S++F + P +Q + + T+ Sbjct: 252 AVLSGIREAIIVTNADGEIILVNPAASRMFRIDGAMLKSHPVKQLADQKLRELFSDVHTK 311 Query: 516 ILSLDLRQTLEK--ITLGSTKEEKLLSLRII-IKKLPFSSCYSLTMHDISEWKQEKNKLS 572 R TL+K ++L + K ++ + + + +K+ ++DI+ KL Sbjct: 312 ------RTTLQKEEVSLVTVKGKRTMQISSMPVKRDGQFDGTVFVLNDIT-------KLR 358 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYID 631 + ++I + DF++ VSHE+RTPLT+I G++E + + G + +P + + I Sbjct: 359 NLERI-------RRDFVSSVSHELRTPLTSIKGYTETLLD---GAMHDPEHAAAFLRIIL 408 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 + + +VND+LD+S+IESGK++ F P L + ++ LV +K+I + F Sbjct: 409 QESEQLTALVNDVLDLSRIESGKIDYRFAPTDLRSILQKSSELVLPAIEKKKIKLDMQFQ 468 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 +P + AD ++ N+L NA+ + I T + S VIL V D G+G+ Sbjct: 469 EELPLVYADAAYLEIAVRNLLDNAVKYVEDTVGRIRVTAYKSESNVILEVHDNGLGIHPS 528 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +L++ + F + ++ + GTGLGL + K +V A+ G + S +G++ + P+ Sbjct: 529 DLDRIFERFYRADKARSRQSGGTGLGLAIVKHIVLAHKGTIEVHSRLNQGSVFRMSLPV 587 >gi|186686479|ref|YP_001869675.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186468931|gb|ACC84732.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 761 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 128/236 (54%), Gaps = 5/236 (2%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A++ + K +FLA VSHE+RTPL +++G+ ++I++++ + +E I+R+ L Sbjct: 382 AQEANRIKDEFLAIVSHELRTPLNSMLGWVQIIRHRKLDEAITSKALET---IERNAKLQ 438 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 +++D+LDIS+I GK+ L+ V L ++ AI + + K I + ++ +++ I Sbjct: 439 SKLIDDILDISRIVQGKIRLNLRKVDLVIVINTAIEAIYPTSEIKDIQVESNLDSSVGEI 498 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 + D ++Q+ N+LSNA+ FTPSGG++ + N + V DTG G++ L Sbjct: 499 MGDAERLQQVVWNLLSNAVKFTPSGGRVEVCLKQV-NSNAQISVSDTGKGISGEFLPYIF 557 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYD 812 + F Q ++ G GLGL + + +V+ + G Y S G ++ PL + Sbjct: 558 ERFRQADSTTTRVDGGLGLGLAIVRHLVEIHSGTVYAVSEGEGLGATFTVLLPLIE 613 >gi|301309590|ref|ZP_07215532.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides sp. 20_3] gi|300832679|gb|EFK63307.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides sp. 20_3] Length = 638 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 132/245 (53%), Gaps = 10/245 (4%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 EK L+ A + A + KS FLA +SHEIRTPL AIIGFS +I L +Y Sbjct: 403 EKESLAEALEKANESDRMKSVFLANMSHEIRTPLNAIIGFSSLIAEL---DLTAEEKEQY 459 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 AN I + L+L +VND+LD+++IESG + H E +L + V + + L + I Sbjct: 460 ANIITTNNELLLKLVNDILDLARIESGGIVFHKESCNLTDLV-KTLYKQHLSDVPEGIEF 518 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTG 745 + + + +D + Q NIL NAI FT S G I I +++N ++V L V+DTG Sbjct: 519 KEKCPDTPICLYSDKERLYQALENILKNAIKFT-SAGFIEIGYEYSTNAQDVRLYVQDTG 577 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G++ + E + F ++ + Q GTGLGL + +A+V G+ + S KG I Sbjct: 578 IGISPEDQEAIFERFKKLDDFVQ----GTGLGLSICQAIVKQLNGRILLQSEKNKGCRIS 633 Query: 806 IIFPL 810 ++F L Sbjct: 634 LVFQL 638 >gi|183222354|ref|YP_001840350.1| putative sensor kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912401|ref|YP_001963956.1| two component response regulator sensor histidine kinase subunit [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777077|gb|ABZ95378.1| Sensor histidine kinase of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780776|gb|ABZ99074.1| Putative sensor kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 791 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 85/255 (33%), Positives = 131/255 (51%), Gaps = 10/255 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K+ + L +AK++AE + K +FLA +SHEIRTPL IIGF+E++ N PL Sbjct: 382 DLTETKKIEYTLRYAKELAEAANIAKGNFLANMSHEIRTPLNGIIGFTELLLN---SPLQ 438 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + EY I SG +L++VN +LD SKI+SGK+ +L + V + L Q+ A Sbjct: 439 EEQK-EYLKNIFFSGKSLLELVNQILDFSKIDSGKLEFESINTNLIDLVQSTLDLFQVSA 497 Query: 680 NEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K I + N+P+ ++ D ++QI N++ NAI FT G + N + + Sbjct: 498 ASKGIALHIQIDPNLPKYVSLDPLRIRQILSNLIGNAIKFTHEGSVKVSLQQMERNGDYV 557 Query: 739 ---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V DTG+G+ + F Q S + G+GLGL + ++ K I Sbjct: 558 TISFEVSDTGIGIDMNVGSRLFDSFSQADTSITRKYGGSGLGLTITNELLLKMNSKLTIQ 617 Query: 796 STPAKGTLIEIIFPL 810 S KG+ + FPL Sbjct: 618 SELGKGS--QFSFPL 630 >gi|165870245|ref|ZP_02214901.1| sensor histidine kinase [Bacillus anthracis str. A0488] gi|167633043|ref|ZP_02391369.1| sensor histidine kinase [Bacillus anthracis str. A0442] gi|167638329|ref|ZP_02396606.1| sensor histidine kinase [Bacillus anthracis str. A0193] gi|170686406|ref|ZP_02877627.1| sensor histidine kinase [Bacillus anthracis str. A0465] gi|170706128|ref|ZP_02896590.1| sensor histidine kinase [Bacillus anthracis str. A0389] gi|177650820|ref|ZP_02933717.1| sensor histidine kinase [Bacillus anthracis str. A0174] gi|190566443|ref|ZP_03019361.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I] gi|218903127|ref|YP_002450961.1| sensor histidine kinase [Bacillus cereus AH820] gi|227815204|ref|YP_002815213.1| sensor histidine kinase [Bacillus anthracis str. CDC 684] gi|229599899|ref|YP_002866374.1| sensor histidine kinase [Bacillus anthracis str. A0248] gi|254734874|ref|ZP_05192586.1| sensor histidine kinase [Bacillus anthracis str. Western North America USA6153] gi|164714133|gb|EDR19654.1| sensor histidine kinase [Bacillus anthracis str. A0488] gi|167513630|gb|EDR88999.1| sensor histidine kinase [Bacillus anthracis str. A0193] gi|167531855|gb|EDR94520.1| sensor histidine kinase [Bacillus anthracis str. A0442] gi|170129130|gb|EDS97995.1| sensor histidine kinase [Bacillus anthracis str. A0389] gi|170669482|gb|EDT20224.1| sensor histidine kinase [Bacillus anthracis str. A0465] gi|172083281|gb|EDT68342.1| sensor histidine kinase [Bacillus anthracis str. A0174] gi|190562578|gb|EDV16545.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I] gi|218537300|gb|ACK89698.1| sensor histidine kinase [Bacillus cereus AH820] gi|227005627|gb|ACP15370.1| sensor histidine kinase [Bacillus anthracis str. CDC 684] gi|229264307|gb|ACQ45944.1| sensor histidine kinase [Bacillus anthracis str. A0248] Length = 459 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 125/251 (49%), Gaps = 13/251 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E + + L+H EK K++F+A +SHEIRTPLT I G+SE +K L Sbjct: 220 GELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKT--VDHLTEE 277 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + I + ++ +V +LLD S+++S NL+ + V L + + E I + A E Sbjct: 278 EIKQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEE 337 Query: 682 KRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K++ F I RI + D +KQI LNI+ NAI ++ G++ I T + VI Sbjct: 338 KKM----QFIKTIERIELIGDRNRLKQIFLNIVQNAIKYSHENGKVYIEATKNEGQAVI- 392 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 +V+D G+G+ L + F QI N G GLGL + K MV+ + G I S Sbjct: 393 KVKDDGIGIAKEHLPYIEQSFYQINN----HATGAGLGLAIVKKMVELHGGTINIISKEG 448 Query: 800 KGTLIEIIFPL 810 GT I I PL Sbjct: 449 IGTTILIKLPL 459 >gi|95931127|ref|ZP_01313852.1| multi-sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95132817|gb|EAT14491.1| multi-sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 588 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 95/359 (26%), Positives = 171/359 (47%), Gaps = 30/359 (8%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 I+ + SDG+ + + +G + N A +L P +++ + T L+Q SV +H Sbjct: 250 IITSISDGLLVTDSDGRVELVNPAAEELLDIPAANLIGQTLTAILQQ--ASVEDH----- 302 Query: 517 LSLDLRQTLEKITLGSTKEEKL----LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 L+ +G + + KL SLR + + + +H+ E L Sbjct: 303 -----SNFLKPGNIGHSAQIKLNTQDGSLRTVHAR-------TAAVHNDQRCSGEIVLLL 350 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H + KS+FL+ +H ++TP+TAI G+SE++ +Q L N E+ YI Sbjct: 351 HDNTEEHRIDRMKSEFLSTATHNLKTPITAITGYSELLMSQ--DQLSNDEQQEFLAYIHD 408 Query: 633 SGNLVLDIVNDLLDISKIESGK-MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 + ++++LLDIS++ESG+ + L V ++E + + + R F Sbjct: 409 KAWQLNKLIDNLLDISRVESGREVRLEKSDVKAQTLINEIEAFCD--SQQTRCEFHDQFE 466 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 + DL + + N++SNAI F+P GG+I ++ T N I ++ D G+GM++ Sbjct: 467 QTDSLLYIDLSKIVLVMENLISNAIKFSPGGGRISLTGNKTGNSYEI-KITDEGIGMSDD 525 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 E + F + S+ +G GLGL L K +V+A+ G+ ++ S P +GT + P+ Sbjct: 526 ECCQVFDRFYRADVSESAP-QGFGLGLTLVKQLVEAHGGEVHVHSIPRQGTTVSFQLPI 583 >gi|300903601|ref|ZP_07121519.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 84-1] gi|300948914|ref|ZP_07162976.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 116-1] gi|300958904|ref|ZP_07171008.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 175-1] gi|301306548|ref|ZP_07212611.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 124-1] gi|301647690|ref|ZP_07247484.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 146-1] gi|300314467|gb|EFJ64251.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 175-1] gi|300404337|gb|EFJ87875.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 84-1] gi|300451610|gb|EFK15230.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 116-1] gi|300838208|gb|EFK65968.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 124-1] gi|301074220|gb|EFK89026.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 146-1] gi|315255154|gb|EFU35122.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 85-1] Length = 593 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 188/398 (47%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 214 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 273 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 274 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 326 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 327 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 381 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q P+ + EY + + + + + ++ LL+ S+ Sbjct: 382 AHEVRNPLTAIRGYVQILRQQTSDPI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 437 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 438 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL 493 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 494 INAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFF------TTKAS 547 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 548 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 585 >gi|291551123|emb|CBL27385.1| Signal transduction histidine kinase [Ruminococcus torques L2-14] Length = 696 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 86/259 (33%), Positives = 138/259 (53%), Gaps = 16/259 (6%) Query: 562 SEWKQEKNKLSHAKKIAE--KESSH-KSDFLARVSHEIRTPLTAIIGFSEVI-KNQRFGP 617 S+ ++EK + KK AE KE+S K+ FL +SH+IRTP+ AIIGFS+++ KN + Sbjct: 284 SKKRREKQYAAELKKSAEQAKEASEAKTRFLFNMSHDIRTPMNAIIGFSDLLGKNLK--- 340 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + EY I SGN ++ I++ +L+ ++IESG L + +L E ++ + Sbjct: 341 -NEEKAREYLGKIKSSGNFLMTIIDQVLEKARIESGTAVLKMQAENLSEMFYSVNTVFES 399 Query: 678 YANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K I + S NI + D +++I LNI+SNAI +TP+G I ++ T T+++ Sbjct: 400 DIQSKEI--QYSIDTNIQHKYAVCDKTKLQEIYLNIVSNAIKYTPNGQAIHVNITETASD 457 Query: 736 E----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + DTG+GM L F + + + + GTGLGL + K+ V+ GK Sbjct: 458 DKKAWYVFICEDTGIGMKQEYLPHIFDEFSREHTATENKVVGTGLGLSIVKSFVELMGGK 517 Query: 792 FYIFSTPAKGTLIEIIFPL 810 Y+ S KGT + PL Sbjct: 518 IYVESEQGKGTKFTVEIPL 536 >gi|322693017|gb|EFY84895.1| putative histidine kinase HHK6p [Metarhizium acridum CQMa 102] Length = 1372 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 122/239 (51%), Gaps = 13/239 (5%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTP+T ++G +E++ + + +Y + I S +L ++ND+ Sbjct: 799 KSQFLANMSHEIRTPITGVLGMAELLSHMDL----DEEQRDYLDNIQSSATSLLTVINDI 854 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---ILADL 701 LD SK+ESG++++ SL V E + +++ K + ++ ++I ++ D Sbjct: 855 LDFSKVESGRLDVEEVQFSLSLVVKEVVRMLRFAVERKNLDFQSDIGSDIENDMVVIGDP 914 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTGVGMTNYELEKAMK 758 V+QI N+L+N+I FT G TT + + I V DTG+G+ ++ + Sbjct: 915 GRVRQIITNLLTNSIKFTNQGYVRFSVTTESETSDSINIKFVVEDTGIGIQEDVRKRLFQ 974 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 PF Q S R GTGLGL + K ++D G+ + ST GT P + PH Sbjct: 975 PFSQGDASTARRFGGTGLGLTICKNLLDLMHGRIILESTVDSGTKASFWIPF---NKPH 1030 >gi|145219188|ref|YP_001129897.1| Hpt sensor hybrid histidine kinase [Prosthecochloris vibrioformis DSM 265] gi|145205352|gb|ABP36395.1| Hpt sensor hybrid histidine kinase [Chlorobium phaeovibrioides DSM 265] Length = 869 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 134/260 (51%), Gaps = 11/260 (4%) Query: 565 KQEKNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + E++ L + AE ++ KS FLA +SHEIRTP+ +IG ++++ + Sbjct: 202 RLEESVLKTEQMAAEARDANVAKSQFLANMSHEIRTPMNGVIGMADLLLETAL----DTE 257 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +YA I RS +L I+ND+LD SKIE+ + L L + + E ++ + A+E Sbjct: 258 QRKYAQTIIRSARSLLKIINDILDFSKIEANRFELEHSDFELCDLLMEISGILGIEAHES 317 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII--STTHTSNEEVIL 739 R+ + IP ++ D ++QI +N+L NA+ FTP GG++ + ++ V++ Sbjct: 318 RLELSVHVVPEIPTSLIGDSGRIRQILVNLLGNAVKFTPVGGEVGVKLKLQQETDRFVVI 377 Query: 740 R--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V DTGVG+ +++ +PF Q S + GTGLGL ++ + G+ + S Sbjct: 378 QFSVFDTGVGIPPEQVDSIFEPFTQADGSTARKYGGTGLGLSISNHLATRMGGRINVESH 437 Query: 798 PAKGTLIEIIFPLYDTSHPH 817 P +G++ L S H Sbjct: 438 PGEGSVFSFNIVLEKQSVQH 457 >gi|254412494|ref|ZP_05026268.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180804|gb|EDX75794.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 411 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 126/224 (56%), Gaps = 2/224 (0%) Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA SHE+RTP+ IIGF++++ QR G L + ++ I ++GN +L +++++LD Sbjct: 174 FLATTSHELRTPMNVIIGFAQMLLLQRHGSLTLSQ-LKMVQCILKNGNHLLSLLSEVLDF 232 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707 ++IE+G + L E ++D+ V+ ++ V+ A +K + + ++ D + ++ Sbjct: 233 AQIEAGALELKAEEFNIDQVVNSTVNDVRPLALQKGLDLSIKIQLKNTSVINDRSRLHKV 292 Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 ++L NA+ FT SG I ++ ++ +I+ V DTG+G++ EL+ F Q+ + Sbjct: 293 LKHLLMNAVKFTKSGS-IWVNVYEVESQRLIIDVEDTGIGLSQAELDYIFDAFRQVDQTI 351 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + GTGLGL + K++V GK + S +G++ + P Y Sbjct: 352 TRQYPGTGLGLAMTKSLVQLMQGKITVESQVGEGSIFRVELPRY 395 >gi|160937186|ref|ZP_02084548.1| hypothetical protein CLOBOL_02076 [Clostridium bolteae ATCC BAA-613] gi|158439750|gb|EDP17499.1| hypothetical protein CLOBOL_02076 [Clostridium bolteae ATCC BAA-613] Length = 837 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 85/275 (30%), Positives = 147/275 (53%), Gaps = 13/275 (4%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y + D++ +Q + L+ A AE ++ KS FL+ +SH+IRTP+ AI+G +++ + Sbjct: 430 YIFAVTDVTHDRQIRENLNAAVAAAEHANASKSVFLSNMSHDIRTPMNAIVGMTKLAEIH 489 Query: 614 RFGPLGNPRYIEYANY-IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + + ++ Y I S +L+++ND+LD+SKIESGK+ L E SL E + I Sbjct: 490 ----IEDREKVKDCLYKIGISSKHLLELINDVLDMSKIESGKLVLTSESFSLTELIQRNI 545 Query: 673 SLVQ-LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT- 730 ++V Y + ++ + + +L D Q+ LN+LSNA FTP G I ++ Sbjct: 546 AIVNPQYQAKNQVFVTETKDIRHEYLLGDSLRFNQVLLNLLSNAGKFTPENGTITLTVKE 605 Query: 731 ----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 H+ + + V DTG+G++ L K PF + + Q + EGTGLGL ++K ++ Sbjct: 606 LPQKHSGHAVYRIAVADTGIGISPEFLPKLFLPFERERSRHQNQAEGTGLGLVISKNIIA 665 Query: 787 ANMGKFYIFSTPAKGTL--IEIIFPLYDTSHPHDC 819 A G+ Y+ S +G++ +E+ PL + C Sbjct: 666 AMGGQIYVESRLGEGSVFTVEVELPLSKEADDELC 700 >gi|90580330|ref|ZP_01236137.1| putative sensor histidine kinase/response regulator [Vibrio angustum S14] gi|90438632|gb|EAS63816.1| putative sensor histidine kinase/response regulator [Vibrio angustum S14] Length = 931 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 128/237 (54%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + + N +Y Sbjct: 275 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTKL----NTSQKDYLLT 330 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+ S N +L I+ND+LD SK+E+GK+ L P +++ E + L+ A+EK + + Sbjct: 331 IENSANNLLTIINDILDFSKLEAGKLLLENIPFDFTDSLDEVMRLLAPSAHEKGLELTLK 390 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTG 745 + IP ++ D ++Q+ N++ NA+ FT G + + + +N + VRDTG Sbjct: 391 IDDRIPAGLIGDPLRIQQVVTNLIGNAVKFTEHGNIDVSVELKSDVDNNIALQFMVRDTG 450 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G++ + + + F Q S R GTGLGL + + +V G+ + S +G+ Sbjct: 451 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEVSLTSRLHQGS 507 >gi|47527271|ref|YP_018620.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'] gi|49184845|ref|YP_028097.1| sensor histidine kinase [Bacillus anthracis str. Sterne] gi|49477455|ref|YP_036139.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196036949|ref|ZP_03104328.1| sensor histidine kinase [Bacillus cereus W] gi|254684570|ref|ZP_05148430.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066] gi|254721328|ref|ZP_05183118.1| sensor histidine kinase [Bacillus anthracis str. A1055] gi|254741274|ref|ZP_05198962.1| sensor histidine kinase [Bacillus anthracis str. Kruger B] gi|254750825|ref|ZP_05202864.1| sensor histidine kinase [Bacillus anthracis str. Vollum] gi|47502419|gb|AAT31095.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'] gi|49178772|gb|AAT54148.1| sensor histidine kinase [Bacillus anthracis str. Sterne] gi|49329011|gb|AAT59657.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|195990438|gb|EDX54427.1| sensor histidine kinase [Bacillus cereus W] Length = 453 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 125/251 (49%), Gaps = 13/251 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E + + L+H EK K++F+A +SHEIRTPLT I G+SE +K L Sbjct: 214 GELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKT--VDHLTEE 271 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + I + ++ +V +LLD S+++S NL+ + V L + + E I + A E Sbjct: 272 EIKQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEE 331 Query: 682 KRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K++ F I RI + D +KQI LNI+ NAI ++ G++ I T + VI Sbjct: 332 KKM----QFIKTIERIELIGDRNRLKQIFLNIVQNAIKYSHENGKVYIEATKNEGQAVI- 386 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 +V+D G+G+ L + F QI N G GLGL + K MV+ + G I S Sbjct: 387 KVKDDGIGIAKEHLPYIEQSFYQINN----HATGAGLGLAIVKKMVELHGGTINIISKEG 442 Query: 800 KGTLIEIIFPL 810 GT I I PL Sbjct: 443 IGTTILIKLPL 453 >gi|332704442|ref|ZP_08424530.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554591|gb|EGJ51635.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 836 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 93/373 (24%), Positives = 176/373 (47%), Gaps = 29/373 (7%) Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF--TVFLEQNTPSV 508 V + ++ E + D I +NR L N A G+P + + K +L + T + Sbjct: 310 VQEYKALAENSPDLIIRVNRGLRYLYVNPAFEAFSGHPASECMGKSIREACYLPEITEKI 369 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDISEWKQ 566 + + S ++L+ +E + ++++ + + DI+E K+ Sbjct: 370 -EEVVARVFSTRQAESLDFALRKPAEEARHFQASVVLESGQEGLEESALVLSRDITELKR 428 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV--IKNQRFGPLGNPRYI 624 + + A + AE+ + KS+FLA +SHEIRTP+ ++G ++ + N +P Sbjct: 429 LEAESKQAMEAAEQANRAKSEFLANMSHEIRTPMNGVMGMLDLALMNNP------DPSVR 482 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 Y +S +L+IVND+LD+++IE+G++ + + + + L A +K + Sbjct: 483 SYLQMGKKSAGHLLNIVNDILDLARIEAGRIEIGTREFDVRMSFEALFRTMALEAEKKGL 542 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------------- 730 A++IP R++ D + Q+ N++ NAI FT + G+I + T Sbjct: 543 RFSAVIASDIPSRLIGDEGRLIQVFTNLIGNAIKFT-TKGEITVKVTVARPTDIGMQEAC 601 Query: 731 -HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 HT + + DTG+G+ +LEK + F Q+ ++ GTGLGLP+++ +V+ Sbjct: 602 PHTDAICMFASISDTGIGIPADQLEKIFESFAQVRGDLHLQHFGTGLGLPISRQLVELMD 661 Query: 790 GKFYIFSTPAKGT 802 GK + S KG+ Sbjct: 662 GKIWSESELGKGS 674 >gi|322711971|gb|EFZ03544.1| putative histidine kinase HHK6p [Metarhizium anisopliae ARSEF 23] Length = 1403 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 122/239 (51%), Gaps = 13/239 (5%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTP+T ++G +E++ + + +Y + I S +L ++ND+ Sbjct: 822 KSQFLANMSHEIRTPITGVLGMAELLSHMDL----DEEQRDYIDNIQSSATSLLTVINDI 877 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---ILADL 701 LD SK+ESG++++ SL V E + +++ K + ++ ++I ++ D Sbjct: 878 LDFSKVESGRLDVEEVQFSLSLVVKEVVRMLRFAVERKNLDFQSDIGSDIENDMVVIGDP 937 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTGVGMTNYELEKAMK 758 V+QI N+L+N+I FT G TT + + I V DTG+G+ ++ + Sbjct: 938 GRVRQIITNLLTNSIKFTNQGYVRFSVTTESETSDSINIKFVVEDTGIGIQEDVRKRLFQ 997 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 PF Q S R GTGLGL + K ++D G+ + ST GT P + PH Sbjct: 998 PFSQGDASTARRFGGTGLGLTICKNLLDLMHGRIILESTVDSGTKASFWIPF---NKPH 1053 >gi|308067783|ref|YP_003869388.1| signal transduction histidine kinase [Paenibacillus polymyxa E681] gi|305857062|gb|ADM68850.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681] Length = 891 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 101/364 (27%), Positives = 173/364 (47%), Gaps = 31/364 (8%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 IL A S+GI ++ EG + N A ++FG L + + ++ + +H+ E Sbjct: 511 ILNAVSEGIVGLSTEGHVRFMNPAAVEMFGVGSAKPLHGA-CIDMIRHADEIGSHFPDEQ 569 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLT-MHDISEWK-------- 565 S+ L+ I G++ + + + KK F + Y ++ + D E K Sbjct: 570 SSI-----LQAIRSGASYQ---VEEAVFWKKGGSSFLASYRISPLMDNGERKGAVMVFVD 621 Query: 566 -QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + ++ AK+ AE+ KS+FL+ +SHE+RTP+ IIG + ++ + + Sbjct: 622 RTNEKEIIRAKESAERADRAKSEFLSVMSHELRTPMNGIIGMAGLLADTEL----DEEQR 677 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 Y + I S ++ I+N++LD+SKIE+GKM+L E LD V L + A EK I Sbjct: 678 SYIDIITSSSGALMQILNEILDLSKIEAGKMSLLHESFVLDNVVGSVADLFMMQAMEKGI 737 Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIS-----TTHTSNEEVI 738 ++ +P +L D ++Q+ +N++SNAI FT G I + H + + Sbjct: 738 ELKWHVDQEMPGMLVGDHVRIRQVLVNLVSNAIKFTERGRVNIFVERKAYSRHKNRCLIE 797 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG+G+ +PF Q+ + + GTGLGL + K +V G + S Sbjct: 798 FSVTDTGIGIPADRQHLLFQPFSQLHPALNRKYGGTGLGLSICKNLVKLMGGSIGVDSDE 857 Query: 799 AKGT 802 A+G Sbjct: 858 ARGA 861 >gi|300088403|ref|YP_003758925.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528136|gb|ADJ26604.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 443 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 79/302 (26%), Positives = 158/302 (52%), Gaps = 20/302 (6%) Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT---MHDISEWKQEK 568 +++ + + ++ + + K ++EK + R P YS+T +H+ S Sbjct: 157 FMSAVRNHEMEEMIRKCVATGRRQEKEIESR------PGRRQYSVTVTPIHNESGAVIVV 210 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYA 627 L++ K++ + + DF+A +SHE+RTP+ ++ +E +K G + + ++ Sbjct: 211 RDLTNLKRL----ETVRRDFVANISHELRTPIASLKLLAETLKE---GAMADQEVAADFL 263 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 N I + + +V++L ++S+IESG L P+ ++ + +Q A+ ++ + Sbjct: 264 NRISVEADKMGQLVDELGELSRIESGAAPLDKRPMDAGAVMTTVVGRLQNQADRAKLTLE 323 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 + + +P + AD ++Q+ +N+ NAI FTP+GG+I + T S + + ++V DTG G Sbjct: 324 VATVDGLPAVRADAGRIEQVLMNLTHNAIKFTPAGGRITL-TAGISEKGIEIKVTDTGAG 382 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 +T +L + + F + ++ G GTGLGL +AK +V A+ G+ S+P +GT I Sbjct: 383 ITADDLPRIFERFYKADKARS--GGGTGLGLAIAKHIVHAHGGEIRAESSPGQGTTISFT 440 Query: 808 FP 809 P Sbjct: 441 LP 442 >gi|266619278|ref|ZP_06112213.1| putative response regulator receiver domain protein [Clostridium hathewayi DSM 13479] gi|288869195|gb|EFD01494.1| putative response regulator receiver domain protein [Clostridium hathewayi DSM 13479] Length = 875 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 85/258 (32%), Positives = 127/258 (49%), Gaps = 11/258 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D +E + + L A AE+ + KS+FL+R+SHEIRTPL AIIG + + P Sbjct: 335 DRTEEVRSRQILQEAMTNAEQANMAKSEFLSRMSHEIRTPLNAIIGMTTIAAAVVRDP-- 392 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + + I S +L ++ND+LD+SKIES M L EP + E ++ +S V Sbjct: 393 -ARVEDCLSKITFSSRHLLMLINDVLDMSKIESRSMILQQEPFDMFEIINGFVSTVYAQT 451 Query: 680 NEKRILIRTS---FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 K I + + F + I LR + QI N+ SNA+ FTP GG+I + + Sbjct: 452 KAKGIEFQETMEGFGEDAIFIGDSLR-LNQILFNLSSNAVKFTPPGGKIRLEVSRYRGRN 510 Query: 737 VILRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 +R DTG+GMT +E+ +PF Q S GTGLG+ + + ++ G Sbjct: 511 TADMIRFTLSDTGIGMTKEAVERVFQPFEQADASIAKLYGGTGLGMSITRNLITLMGGCI 570 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S P GT + P Sbjct: 571 RVDSEPGVGTACIVELPF 588 >gi|188583920|ref|YP_001927365.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179347418|gb|ACB82830.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 798 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 5/238 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHE+RTPL+A+IG+SE++ + LG + I+ + +L ++ND+ Sbjct: 283 KSQFLANMSHELRTPLSAVIGYSEML-GEELEDLGQAELLPDLRKIESAARHLLGLINDV 341 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LDISKIE+G++ L E + + + + Q +KR R ++ + D + Sbjct: 342 LDISKIEAGRLTLAAESFDVASLIEDVSAATQSLITKKRNRFRLDLEGDLGAMHQDQLKL 401 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFG 761 +Q +N++ NA F+ G+I++S E+ + V DTG+G+T ++ + + F Sbjct: 402 RQSLINLIGNAAKFSED-GEIVLSVRRVREEDGEWLSFAVSDTGIGLTQEQIGRLFERFS 460 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 Q S + GTGLGL + +A ++ G + ST G I P +H + Sbjct: 461 QADESTTRQFGGTGLGLAITRAFIERMGGTIGVESTFGAGATFTIRLPATLAAHEEEV 518 >gi|332992628|gb|AEF02683.1| two-component hybrid sensor and regulator [Alteromonas sp. SN2] Length = 687 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 129/246 (52%), Gaps = 17/246 (6%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS---G 634 A++ + KS+FL+ +SHE+RTP+ + G E+ + NP E NY+ ++ G Sbjct: 190 AQEANRAKSEFLSSMSHELRTPMNGLFGMIEL-------AMDNPSKSE--NYLRKAKTAG 240 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L ++ND+LD+SKIE+GK+ + PV L + + E +S+ ++Y K + + + Sbjct: 241 RQLLTLINDILDLSKIEAGKIVVGKGPVDLLQLLDEVVSIQRIYCQNKGLDFHYNKQQTL 300 Query: 695 -PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVILRVRDTGVGMTN 750 P I D+ + QI N+LSNAI FT SG + +S + S ++ V+DTG+G+ + Sbjct: 301 APIIQGDITRIAQILHNLLSNAIKFTESGS-VTLSVSQAVTASGNTLLFSVKDTGIGIDS 359 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +L + F Q S GTGLGL +AK + G ST G+ + P+ Sbjct: 360 DKLSTIFQKFEQADQSTTRHYGGTGLGLSIAKELAQLMDGNILATSTLGAGSEFTLTLPV 419 Query: 811 YDTSHP 816 + S P Sbjct: 420 VEESLP 425 >gi|317478874|ref|ZP_07938024.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|316904956|gb|EFV26760.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 914 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 87/261 (33%), Positives = 130/261 (49%), Gaps = 23/261 (8%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQR 614 DI+E +Q K +L AK+ AE KS FLA +SHEIRTPL AI+GFS +I + +R Sbjct: 505 DITEMEQMKRELLVAKEKAETSDRLKSAFLANMSHEIRTPLNAIVGFSRIIAESTNEEER 564 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 G Y ++ + +L ++N++LD+SKIESG + PV L E I Sbjct: 565 LG---------YYEIVESNNERLLQLINEILDLSKIESGIVEFTITPVRLHPLCKE-IHD 614 Query: 675 VQLYANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ K + LI NI I D + Q+ N++ NA FT +G I H Sbjct: 615 AHIFRCPKGVELIYEPSDENIV-IDGDKNRIFQVISNLIGNAFKFTTAGH--ISYGYHQE 671 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + V V DTG+G+ ++++ + F ++ N Q GTGLGL + K +++ G Sbjct: 672 GKYVAFHVTDTGMGIAPDKVDRVFERFVKVNNFAQ----GTGLGLSICKTIIERLGGNIS 727 Query: 794 IFSTPAKGTLIEIIFPLYDTS 814 + S KGT + PL S Sbjct: 728 VTSEVGKGTTFTFVLPLEAAS 748 >gi|317471741|ref|ZP_07931081.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316900764|gb|EFV22738.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 799 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 75/265 (28%), Positives = 136/265 (51%), Gaps = 13/265 (4%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E +++K L A + A ++ K++FL+ +SH+IRTP+ AI+G + + + P + Sbjct: 267 EQERQKTALQDAYQAARVANAAKTNFLSSMSHDIRTPMNAIMGMAAIAQANLECP---DK 323 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + N I+ S +L ++N++LD+SKIESGK+N+ E +SL + + + + N K Sbjct: 324 IQDCLNKINTSSRHLLSLINEVLDMSKIESGKINISLEQISLPDMIGAVMDMCLPLINGK 383 Query: 683 RILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-------SN 734 + S + N ++AD ++Q+ +N++SNA+ +TP GG I + S Sbjct: 384 HQQFQMSIGHINHEHVIADGDRLRQVLMNLISNAVKYTPEGGTITLRINEQYSPNPKKSQ 443 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E I DTG+G++ L +PF + +S+ + +GTGLG+ + + +V G + Sbjct: 444 YEFI--CIDTGIGISEEFLPHIFEPFSRAEDSRISKIQGTGLGMAITENIVRMMNGTIGV 501 Query: 795 FSTPAKGTLIEIIFPLYDTSHPHDC 819 S G+ + PL C Sbjct: 502 ESKIGTGSKFTVSVPLEICGEEEVC 526 >gi|170698173|ref|ZP_02889252.1| Hpt sensor hybrid histidine kinase [Burkholderia ambifaria IOP40-10] gi|170136938|gb|EDT05187.1| Hpt sensor hybrid histidine kinase [Burkholderia ambifaria IOP40-10] Length = 1243 Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 97/313 (30%), Positives = 156/313 (49%), Gaps = 23/313 (7%) Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL-------PFSSCYSLTMHDISEWK--QE 567 L++ L L K T K + LRI ++L PF S + T + W E Sbjct: 645 LAVQLTDILHKAANQQTPHFKDMHLRINGRELDAHAWVVPFVSDANATRSLLIGWMDVSE 704 Query: 568 KNKLSHAKKIAEKESSH----KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL-GNPR 622 + ++ A K+A++E+ H KS FLA +SHEIRTP+ AI+G E+ Q L P Sbjct: 705 RGEMQRAAKLAKEEAEHANHAKSTFLATISHEIRTPMNAILGILELRVRQAERSLSAAPE 764 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 ++ A RS ++ +++++LDISKIE+GKM + +P L+ ++ + + +K Sbjct: 765 DLQAALESARS---LISMLDEILDISKIEAGKMAISNQPAYLNPLTDSVAAIYEEVSRKK 821 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-----IISTTHTSNEEV 737 + R + ++L D+ ++QI N+LSNAI FT + GQI I + V Sbjct: 822 GLTFRYRATGHDHQVLTDVLRLRQILSNLLSNAIKFT-AQGQITFLVRIQDDVDGEHTLV 880 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + + DTG+G+ + +KP+ Q + + GTGLGLP+ + A G I S Sbjct: 881 HIIIADTGIGIDPATIPTLLKPYTQATPTIANQYGGTGLGLPICHYLTTALGGTLSIHSA 940 Query: 798 PAKGTLIEIIFPL 810 +GT I + F L Sbjct: 941 LEQGTRISLRFRL 953 >gi|237715649|ref|ZP_04546130.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262408658|ref|ZP_06085204.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|294646689|ref|ZP_06724314.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294807119|ref|ZP_06765937.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229444358|gb|EEO50149.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262353523|gb|EEZ02617.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|292637977|gb|EFF56370.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294445685|gb|EFG14334.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 631 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 133/248 (53%), Gaps = 15/248 (6%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ ++LS A + AE+ + KS FLA +SHEIRTPL AI+GFS ++ + +P + Sbjct: 392 RKTYSRLSEAVEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPHTE-----DPVEM 446 Query: 625 -EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 EYA+ I+ + +L+L ++ND+LD+SKIE+G + + + +++ + E ++L Sbjct: 447 REYADIIETNTDLLLQLINDILDLSKIEAGTFDFYPSSIDVNQTMEEIEQSMRLRLKNSD 506 Query: 684 ILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + + +F +P L D + Q+ N ++NAI FT + G I + T + + V Sbjct: 507 VTL--AFTERLPGCLFYIDKNRLIQLLANFVNNAIKFTQT-GTICMGYRMTDTDTIYFYV 563 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG GM+N + E + F + Q GTGLGL + + +V+ GK + S KG Sbjct: 564 SDTGCGMSNEQCEHVFERFVKYNPFIQ----GTGLGLSICRTIVERLGGKIGVDSEEGKG 619 Query: 802 TLIEIIFP 809 + P Sbjct: 620 STFWFTLP 627 >gi|213424962|ref|ZP_03357712.1| hybrid sensory histidine kinase TorS [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 731 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 84/247 (34%), Positives = 129/247 (52%), Gaps = 19/247 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK + KS FLA +SHEIRTPL I+G +++ ++ PL Y + I+ Sbjct: 253 QARAEAEKANEAKSTFLAAMSHEIRTPLYGILGTVQLLADK---PL-MANYRDDLQAIND 308 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHF--EPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG +L I+ND+LD S IE G N+ EP + ++ A+ L+ + ++ + T F Sbjct: 309 SGESLLAILNDILDYSAIEVGGTNVSISEEPFEPRQLLNSALHLMH---SRVQVALITDF 365 Query: 691 ANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 + +P L D R ++QI +N+LSNA FT G I+ T ++ + V DTG G+ Sbjct: 366 SEQLPSTLQGDPRRIRQIVINLLSNAAKFTDRGS--IVLRTFCDDQSWFIEVEDTGCGIP 423 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L KPF Q RG GTGLGL ++ ++ +A G + ST G+ + P Sbjct: 424 EAKLTAIFKPFVQATGC---RG-GTGLGLAISASLAEAMGGTLTVTSTLHVGSCFRLQLP 479 Query: 810 LYDTSHP 816 + HP Sbjct: 480 V---RHP 483 >gi|73749197|ref|YP_308436.1| sensor histidine kinase [Dehalococcoides sp. CBDB1] gi|73660913|emb|CAI83520.1| sensor histidine kinase [Dehalococcoides sp. CBDB1] Length = 432 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 101/388 (26%), Positives = 189/388 (48%), Gaps = 28/388 (7%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI------ILSTNRAVSKLFGYPV 489 E + R+N +K+ + +I E + D I I + + I+ N A K FGY Sbjct: 56 EQKNQRLNFQKL---YRKYKAIFEFSGDPIVISEIKSVGPHGRTIIEVNEAAIKHFGYSR 112 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE---KITLGSTKEEKLLSLRIIIK 546 ++L ++ ++ + L+ E K GS + ++ + I I Sbjct: 113 SELLLHDTAFLHPDEEVDIVLPWVGQELTRKHHVFFEAKHKRKDGSIVDVEIHATMIAID 172 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHA----KKIAEKESSHKSDFLARVSHEIRTPLTA 602 P S + D ++++ L A ++ E + +++F + HE++TPLT Sbjct: 173 DSPISLAVIRDISDRKNFEKKSQDLHLAEQNLRQELENQIQQRTEFYKALVHELKTPLTP 232 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 I+ SEV+++ G + AN I+ + +L +N+L D++K E G + + + Sbjct: 233 IVLNSEVLEDNLEG-----ESKKLANNINIASLELLTRINELYDMAKGEVGILKITRSWI 287 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 LDE V+E L N K++ +R F+ ++P I AD +KQ+ +N+L+N+I F+P Sbjct: 288 YLDELVNELFGLFSSSLNHKQLNLRIFFSPDLPLIYADPYRLKQVLINLLNNSITFSPPK 347 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 GQI++ T + E+++ V D G+G+++ +L+K KP+ + +G GLGL L+K Sbjct: 348 GQIVLICT-ARDSEIVMDVIDEGIGISDDDLQKLFKPY------VLTKSDGLGLGLSLSK 400 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +V+ + G+ ST G+ +I P+ Sbjct: 401 KIVELHNGEIKAESTLGWGSKFSVILPV 428 >gi|301053530|ref|YP_003791741.1| sensor histidine kinase [Bacillus anthracis CI] gi|300375699|gb|ADK04603.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI] Length = 453 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 125/251 (49%), Gaps = 13/251 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E + + L+H EK K++F+A +SHEIRTPLT I G+SE +K L Sbjct: 214 GELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKT--VDHLTEE 271 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + I + ++ +V +LLD S+++S NL+ + V L + + E I + A E Sbjct: 272 EIKQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEE 331 Query: 682 KRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K++ F I RI + D +KQI LNI+ NAI ++ G++ I T + VI Sbjct: 332 KKM----QFIKTIERIELIGDRNRLKQIFLNIVQNAIKYSHENGKVYIEATKNEGQAVI- 386 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 +V+D G+G+ L + F QI N G GLGL + K MV+ + G I S Sbjct: 387 KVKDDGIGIAKEHLPYIEQSFYQINN----HATGAGLGLAIVKKMVELHGGTINIISKEG 442 Query: 800 KGTLIEIIFPL 810 GT I I PL Sbjct: 443 IGTTILIKLPL 453 >gi|269795552|ref|YP_003315007.1| signal transduction histidine kinase [Sanguibacter keddieii DSM 10542] gi|269097737|gb|ACZ22173.1| signal transduction histidine kinase [Sanguibacter keddieii DSM 10542] Length = 576 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 122/226 (53%), Gaps = 3/226 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +F+ +SHE+RTPL++I+G+ E+++++ GPL +Y + +R+ +L +V DL Sbjct: 349 KDEFVGMISHELRTPLSSILGYLELLRDEEDGPL-TAEQTQYLDVAERNAQRLLRLVGDL 407 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRS 703 L +++E+G+ + + L+ + A + A + +R ++ ++ D Sbjct: 408 LFTAQVEAGRFPIVHQSTELESVLRAAAQTFEPVAAAASVRLRVVMDESLSTVVRGDATR 467 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 + Q N+LSNA+ F+P+GGQ+ +S +E + VRDTG+G+ + EL++ F + Sbjct: 468 LGQAVDNLLSNAVKFSPAGGQVTLSLV-AHDERATITVRDTGIGIPDTELDQLTTRFFRA 526 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + G GLGL + KA+V A+ G+ + S GT + P Sbjct: 527 STATSASVPGIGLGLAITKAIVVAHRGRLDVTSEVGIGTAFTVDLP 572 >gi|261420882|ref|YP_003254564.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|319768553|ref|YP_004134054.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] gi|261377339|gb|ACX80082.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|317113419|gb|ADU95911.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] Length = 609 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 117/423 (27%), Positives = 190/423 (44%), Gaps = 59/423 (13%) Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 S ++ ++ LAMTF K Q + + +RK+E S Sbjct: 226 SRKVKVYGYDEIGQLAMTFNNLTKKLQEAQATTEG-----------ERRKLE-------S 267 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +L +DG+ +R G ++ N A + E +L + + + Y E Sbjct: 268 VLTHMTDGVIATDRRGRVILINDAALNILNVSRETVLSSSIV-----DVLGIADQYTFET 322 Query: 517 LSLDLRQTLEKITLGSTKEEKLL---SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 L L+ R +L I ST EE + SL +I K+ F + + +HDI+E Sbjct: 323 L-LEERDSL--ILDFSTDEELYILRASLSVIQKEGGFVNGLIVVLHDITE---------- 369 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG-NPRYIEYA-NYID 631 EK + F+A VSHE+RTPLT + + E + + + PR+I+ N + Sbjct: 370 ----QEKIDRERRQFVANVSHELRTPLTTMKSYLEALGDGAWQDKDIAPRFIQVVQNETE 425 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 R ++ +VNDLL +SK++S L ++ + I +L ++ IR F Sbjct: 426 R----MIRLVNDLLHLSKLDSKDYKLKKTWINFSAYFHKVIDRFELTKSDN---IR--FV 476 Query: 692 NNIPR----ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 IPR I D + Q+ NI+SNA+ ++P GG I ++E +I+ V D GVG Sbjct: 477 RKIPREAIFIEVDEDKITQVLDNIISNALKYSPQGGTITFRVRELADE-IIVSVSDEGVG 535 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +L K + F ++ ++ + GTGLGL +AK +V A+ G + S KGT I Sbjct: 536 IPKADLAKIFERFYRVDKARSRKLGGTGLGLAIAKEVVVAHGGTIWAESKEHKGTTIYFT 595 Query: 808 FPL 810 PL Sbjct: 596 LPL 598 >gi|254302065|ref|ZP_04969423.1| sensor histidine kinase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322257|gb|EDK87507.1| sensor histidine kinase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 623 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 131/245 (53%), Gaps = 18/245 (7%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +LS +K+IAE + K++FLA++SHE+RTPLT IIG+S ++ + + +P E Sbjct: 145 ELSISKEIAESANKAKNEFLAKISHEMRTPLTPIIGYSRILAKE----INDPSSKEKLEI 200 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL----DEAVSEAISLVQLYANEKRIL 685 I SG +L+ N+LLD SKIESGK++L++E ++ + E I L A K I Sbjct: 201 IHTSGVKLLNFTNELLDFSKIESGKVDLNYETFNIRTLFQDIYHEHIDL----AKSKNIN 256 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + + + I +D + +IA NI+ NA+ +T G ++ N + V D+G Sbjct: 257 FKIDYLHANVSIYSDKIKIYEIAKNIIHNALKYTEKG--FVLCDVFVENNTLFFNVYDSG 314 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G++ ++ + F QI + Q G GLGL + K +++ GK + S G+ + Sbjct: 315 IGISEENIKNIFESFVQIGSEQS----GAGLGLSITKKLLEVLNGKIEVESKVGIGSTFK 370 Query: 806 IIFPL 810 I P+ Sbjct: 371 IQIPI 375 >gi|332994347|gb|AEF04402.1| multi-sensor hybrid histidine kinase [Alteromonas sp. SN2] Length = 956 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 113/410 (27%), Positives = 194/410 (47%), Gaps = 32/410 (7%) Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 E + T P E AN G++ +R +E V L ++ + I I Sbjct: 400 EKHIKWTNTPLEDANHNIRGAIFVGVDYS------TQRSLESHVQILNHAMDEATVSIVI 453 Query: 468 --INREGI-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 I R G I+ N A ++L GY EDI+ + + T S + ++ R+ Sbjct: 454 ADIKRTGQPIIYVNNAFNRLTGYNKEDIIGRNCRFMQGEGTDSNTTALIRSAIAK--REP 511 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-----MHDISEWKQEKNKLSHAKKIAE 579 +E L K+ ++I+ P S +T D+++ +Q + L AK+ AE Sbjct: 512 IETTILNYRKDGASFYNKLILT--PVKSDGEVTHYIGFQQDVTQQRQAERYLQDAKQKAE 569 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR--YIEYANYIDRSGNLV 637 + + KS FLA +SHEIRTP+ I G +++ N PL + + Y+ A + S + Sbjct: 570 ESAHMKSGFLASMSHEIRTPIHGISGVLQLLTN---SPLNDEQKHYLSLATF---SIQGL 623 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF-ANNIPR 696 L IVND+LD SKIE+G++ + +P L E + S + EK + + F Sbjct: 624 LHIVNDILDFSKIEAGQLQIDDQPFDLLETLESLQSQYAILCQEKGLRLHFHFNLQGFHV 683 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--HTSNEEVIL--RVRDTGVGMTNYE 752 ++ D +QI N++ NA+ FT G+I ++TT HT+++++ L V+D+G+G+ + Sbjct: 684 VIGDSVRFRQILSNLIGNAVKFTEK-GEIDVTTTLEHTNDDKLRLTCAVKDSGIGIAKDK 742 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 F Q S + GTGLGL ++K + + G+ ++ S +G+ Sbjct: 743 QAGIFDVFTQEDLSTTRKFGGTGLGLSISKQLCELMDGEIHLESEKGEGS 792 >gi|330938839|gb|EGH42358.1| PAS protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 402 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 93/375 (24%), Positives = 165/375 (44%), Gaps = 55/375 (14%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L ++L++ DG+ +I+R+G + N + G+ S + H Sbjct: 66 RLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGW-----------------DESRLGHS 108 Query: 513 LTEILSL-DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-------------- 557 L E L +L + L + G T E L I I YS+T Sbjct: 109 LGEALGRPELDEQLHLVLRGGTLERAPEDLAIEIDGESRLLTYSMTPVSHTKGHILGAVM 168 Query: 558 -MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI-IGFSEVIKNQRF 615 +HD++E + + +S+F+ R SHE+RTP+T + + F + + F Sbjct: 169 VLHDVTEQRAFERV--------------RSEFVLRASHELRTPVTGMHMAFGLLQERLHF 214 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P R + N + ++ ++NDLL+ S+ ++G L P S++ + EA + Sbjct: 215 AP--ESREADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLQEAKARF 272 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A E+ I++ +PR+ AD ++++ N+L NA+ TP G +I E Sbjct: 273 EDQAQEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTPPNG-LIRLQARRHGE 331 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 I+ V D G G+ + + +PF Q+ + G GLGL L K +V + G+ ++ Sbjct: 332 RAIISVEDNGEGIAYGQQGRIFEPFVQVGRKKG----GAGLGLALCKEIVQLHGGRMGVY 387 Query: 796 STPAKGTLIEIIFPL 810 S P +GT + PL Sbjct: 388 SRPGQGTQFYMALPL 402 >gi|169335858|ref|ZP_02863051.1| hypothetical protein ANASTE_02284 [Anaerofustis stercorihominis DSM 17244] gi|169258596|gb|EDS72562.1| hypothetical protein ANASTE_02284 [Anaerofustis stercorihominis DSM 17244] Length = 968 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 126/254 (49%), Gaps = 8/254 (3%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 SE + + L A A + KSDFL+R+SH+IRTPL AIIG S + K + P Sbjct: 435 SERIRSEQLLKDALNAARTANEAKSDFLSRMSHDIRTPLNAIIGMSTIGKLKIEKP---N 491 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 ++ + ID S +L ++ND+LD+SKIESGK+ L+ E E + E ++ A E Sbjct: 492 SVLDCFSKIDSSSKYLLSLINDILDMSKIESGKVTLNDERFDFSEMIHEINEIIYDQAVE 551 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-- 738 K I + N+ + +AD + QI +N+LSN++ + G I S E + Sbjct: 552 KGIEYKVYSDINMDKYYIADRLKLNQIFMNLLSNSLKYFSKGDFIHFSFKEVKRERGVSL 611 Query: 739 --LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V D+G GM+ L+K PF Q GTGLGL + K +VD G + S Sbjct: 612 IEFIVEDSGCGMSKGFLDKLFLPFEQENAGVARNNVGTGLGLTIVKNIVDIMEGNIEVIS 671 Query: 797 TPAKGTLIEIIFPL 810 +G+ + PL Sbjct: 672 EKGRGSKFIVTLPL 685 >gi|220930752|ref|YP_002507661.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium cellulolyticum H10] gi|220001080|gb|ACL77681.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium cellulolyticum H10] Length = 607 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 94/355 (26%), Positives = 173/355 (48%), Gaps = 26/355 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +IL +DG+ + +G+ + N A KL G D + PF F + Sbjct: 275 TILNYMADGVMAFDLKGMAIHANPAARKLLG---NDAVSHPFKEFAVK------------ 319 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 + LD+R +E I +E + II + + Y D ++ + + H Sbjct: 320 -VGLDVR--IEDIVY--FEESPVRESDTIINDM-YVKVYFAVFTDTNKKPEGIIVVLHDA 373 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSG 634 +K S + +F+A VSHE+RTP+T+I ++E + + G + + + + ID Sbjct: 374 TEQQKLESMRREFVANVSHELRTPITSIKSYTETLLD---GAVEDHETSNRFLSVIDSEA 430 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 + + +V DLL +S++++ +MN E VSLD V + +++ + K + + +I Sbjct: 431 DRMTRLVKDLLQLSRLDNQQMNWKIEKVSLDAMVKTIVERLKIESQRKNQKLESYVIGDI 490 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 P I AD ++Q+ +N++SN+I +T G+I + N +V ++V D+G+G+ L Sbjct: 491 PVINADKDRLEQVVVNLISNSIKYTAEYGEITVYVGKIYN-DVYMKVTDSGIGIPGESLP 549 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + F ++ ++ GTGLGL +AK +V A+ G I S KGT + + P Sbjct: 550 RVFERFYRVDKARSRDMGGTGLGLSIAKEIVQAHGGTINISSEVGKGTEVVVKIP 604 >gi|26988825|ref|NP_744250.1| two-component sensor protein [Pseudomonas putida KT2440] gi|24983627|gb|AAN67714.1|AE016402_6 two-component sensor protein [Pseudomonas putida KT2440] Length = 1211 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 91/259 (35%), Positives = 137/259 (52%), Gaps = 14/259 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DISE +Q +L AK+ A+ + KS FLA +SHEIRTP+ A+IG E+ +K G + Sbjct: 687 DISERRQLVLELRQAKQQADDANRAKSTFLATISHEIRTPMNAVIGMLELAVKRADQGRV 746 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + +E A++ S +L ++ D+LDI +IESG ++L E V L V + Sbjct: 747 -DRSALELAHH---SAKDLLGLIGDILDIVRIESGHLSLAPEVVDLAALVESVARIFDGQ 802 Query: 679 ANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----HTS 733 A +K + + A +L D KQ+ N++SNAI FT GQ+ IS TS Sbjct: 803 ARQKGLALEVQIAPAARCHVLLDPLRFKQVLSNLVSNAIKFTEH-GQVRISVRLLDDGTS 861 Query: 734 NEEVI-LRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGK 791 V+ L VRD+G+G+ +L++ PF Q P+SQ R GTGLGL + + + + G Sbjct: 862 TPAVLELEVRDSGIGIHPDDLQRLFNPFIQANPHSQGARA-GTGLGLAICRNLCEMMGGS 920 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + S GT + + PL Sbjct: 921 LSMKSLEDVGTQVRLKMPL 939 >gi|291523081|emb|CBK81374.1| Signal transduction histidine kinase [Coprococcus catus GD/7] Length = 886 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/247 (32%), Positives = 137/247 (55%), Gaps = 21/247 (8%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDR 632 A + A +E+ K+DFL+R++H+IRTPL A++GF+ + K + + E + + Sbjct: 489 AAEAANRENEAKTDFLSRMAHDIRTPLNAVLGFAYIAK----AHIDEKSIVSENLDKLQS 544 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV----SEAISLVQLYANEKRILIRT 688 +G + +V+D+ DIS+IESG + H EP D S+ I + Q+ A+ K L T Sbjct: 545 AGRYIQRLVDDVTDISQIESG--HFHIEPAFFDVMTLFRDSQDI-MGQMAADRK--LHMT 599 Query: 689 SFANNI--PRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-THTSNEEVILR----V 741 A++I P+I AD +KQI +N++SNA+ +TP GG + TS+ +R V Sbjct: 600 CRAHDILHPQIDADAIRLKQIYVNLVSNAVKYTPEGGTVHFELYEETSDSPGCVRLVSIV 659 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +D G+GMT ++K + F + +++ + G+GLGL + K +VD G+ + S G Sbjct: 660 QDNGIGMTEDYMKKMYERFSRSVDTRINKVRGSGLGLAIVKELVDRMNGRIEVQSAVGVG 719 Query: 802 TLIEIIF 808 T ++F Sbjct: 720 TTFRVVF 726 >gi|260175189|ref|ZP_05761601.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|315923421|ref|ZP_07919661.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|313697296|gb|EFS34131.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 391 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/264 (30%), Positives = 129/264 (48%), Gaps = 12/264 (4%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +T+HD++ KQ + +L AK+ AEK S FLA +SHEIRTPL AI GF+EV+ + Sbjct: 138 ITVHDVTRRKQAEKELQLAKEKAEKADISNSAFLANMSHEIRTPLNAITGFAEVLGS--- 194 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 +Y I + +L++ +VND+LD+SKIE+G + V +++ +S+ L Sbjct: 195 -ATTEEEKAQYQEIIKMNADLLMQLVNDILDMSKIEAGTLEFVQTTVDVNQLLSDLQQLF 253 Query: 676 QLYANEK--RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 Q+ N+ +I I + + I D V Q+ N NAI FT G I Sbjct: 254 QMRVNDAGGKIQIIAEPSCSSCMIQTDRNRVAQVLSNFAGNAIKFTHEGS--IRLGYEAR 311 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 N E+ V+DTG G+ +L + F ++ ++ G GLGL +++ +V G+ Sbjct: 312 NTELYFYVKDTGAGIPAEKLPDVFERFVKLNKDKK----GAGLGLSISQTIVAKLGGQIG 367 Query: 794 IFSTPAKGTLIEIIFPLYDTSHPH 817 S +G+ P P Sbjct: 368 ADSVEGEGSTFWFTIPYRSCGKPR 391 >gi|225175738|ref|ZP_03729731.1| integral membrane sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] gi|225168662|gb|EEG77463.1| integral membrane sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] Length = 535 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 135/245 (55%), Gaps = 4/245 (1%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q + +LS + + + KS+F A ++HE+RTPLT+++ F E++ ++ GP+ P E Sbjct: 281 QGQRRLSQLNEKLGESNRLKSEFTATMTHELRTPLTSVVAFCELMLDEVSGPI-TPEQRE 339 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I S ++ +VND+LD++K E+G + +H E V L++ + + A++ I Sbjct: 340 NLLDIKTSAQQLMVLVNDILDMAKHEAGSLRIHKEKVDLNDVLRMVRRSMSAIAHQNGIS 399 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + +P + D ++Q+ +N+++NAI FT GG+I +S + + I+ V+DTG Sbjct: 400 LDVE-KTTLPFVYGDRDRIQQMVVNLVANAIKFTKDGGRITVS-ANGEGDFAIISVQDTG 457 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G++ L + F Q + +Q R +GTGLGL L K + + GK + S +G+ + Sbjct: 458 IGISPELLPHIFEKFRQGDHPKQ-RRKGTGLGLALVKTLAELQDGKVAVDSEVGEGSCFK 516 Query: 806 IIFPL 810 I P Sbjct: 517 IYLPF 521 >gi|147678721|ref|YP_001212936.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] gi|146274818|dbj|BAF60567.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] Length = 982 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 83/265 (31%), Positives = 132/265 (49%), Gaps = 16/265 (6%) Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 YS T+ + ++ + L AK+ A+ + KSDFLA +SHEIRTP+ +IG +E++ Sbjct: 432 AYSRTLEQ--KVRERTSDLERAKREADTANRAKSDFLALMSHEIRTPMHGLIGTAELLME 489 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVS 669 PL N EYA I+ S ++L I++D+LD S+IE GK+ L F+P +++ V+ Sbjct: 490 T---PL-NEEQREYAAVINESSEMLLAIIDDILDFSRIEEGKLALEEAGFDPRQVEKRVA 545 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QI 725 L A K +L ++ +PR+L D + Q+ LN++ NA+ FT G ++ Sbjct: 546 ---GLFAPKAGLKGLLFTSAVDAAVPRVLRGDPLRLGQVLLNLVGNAVKFTERGEVSLRV 602 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + ++ VRDTG G+ PF Q S R GTGLGL + + +V Sbjct: 603 FVEKREGDIAKIRFEVRDTGPGIPEGVRSSLFDPFTQADASTTRRFGGTGLGLSICRRLV 662 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810 + G+ S +G P Sbjct: 663 ELMNGEIGFASEEGRGATFWFTIPF 687 >gi|93006775|ref|YP_581212.1| GAF sensor hybrid histidine kinase [Psychrobacter cryohalolentis K5] gi|92394453|gb|ABE75728.1| GAF sensor hybrid histidine kinase [Psychrobacter cryohalolentis K5] Length = 603 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 80/277 (28%), Positives = 132/277 (47%), Gaps = 40/277 (14%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 KL ++ A+ + KS FLA +SHEIRTP+ IIG E++ + + EY Sbjct: 175 KLQEQQRNAKYANEMKSAFLANMSHEIRTPMNGIIGMVEMLSDTML----SVEQREYIEN 230 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I S +L I+N +LD+SK+E+GKM + P++L +E +SL + A ++ +++ Sbjct: 231 IKVSNEHLLAIINGILDLSKVEAGKMTIDSIPMNLSSLCNEVVSLFAIKARQRGLVLDYH 290 Query: 690 FANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----------------- 731 + ++ P + D +KQ+ +N+++NAI FT GG++ I H Sbjct: 291 YTESLSPYVKGDPVRLKQVMVNLVNNAIKFTREGGRVTIDVKHMQDNPCLDNKDCDHAKG 350 Query: 732 ----------------TSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 T ++E+ L V DTGVG+ + LE + Q G Sbjct: 351 NNDSRLDFAIDDKNSTTIHQEMTLCIEVTDTGVGIKSESLEAIFDAYDQANKYTHRLYGG 410 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 TGLGL + K++V+ G + S GT ++ PL Sbjct: 411 TGLGLSVCKSLVELMGGYIEVDSVVGIGTTFRVLLPL 447 >gi|330831800|ref|XP_003291944.1| hypothetical protein DICPUDRAFT_156601 [Dictyostelium purpureum] gi|325077858|gb|EGC31544.1| hypothetical protein DICPUDRAFT_156601 [Dictyostelium purpureum] Length = 1468 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 97/340 (28%), Positives = 166/340 (48%), Gaps = 27/340 (7%) Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP----SVMNHYLTEILSL 519 G+ +GI+L N + + GY D+ L TP + L E+ S Sbjct: 747 GVMFSTFKGIVLDANDMLLQTIGYTRGDLEEGKIDWMLL--TPPEYFEISARALQELKSK 804 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISEWKQEKNKLSHAKKIA 578 Q +EK + K K + + I + S+ +T + D+S ++Q A+ A Sbjct: 805 RWCQPIEKAY--THKSGKRVPVLITSAMIDGSTEQCITFVFDLSRYRQ-------AELAA 855 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 + + K+ F+ +SHE+RTP I+G S+++ + P + + I RS + ++ Sbjct: 856 IEATRLKTQFITNISHELRTPCHGIVGMSQLLLDSNLTPTQR----DNVDSIKRSTDSLI 911 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-- 696 ++ND+LD SK+E GK+ L E L + E + N K I + + + P Sbjct: 912 SLINDILDFSKLEYGKVTLENESFELLPMIEEVLESQTSVVNHKGIDLIFTMGRDYPVPP 971 Query: 697 -ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYE 752 I D S+K++ LN++ NA FT SG ++ IST + S +++ LR V+D+G+G+ + Sbjct: 972 VIFGDRNSLKKVLLNLVGNATKFTESGFVLLEISTDYVSGDQISLRFTVKDSGIGIPEDK 1031 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 +E+ PFGQ+ S + G+GLGL K +V A MG + Sbjct: 1032 IEQIFIPFGQVDGSFSRKYGGSGLGLSFCKELV-ALMGGY 1070 >gi|323692410|ref|ZP_08106646.1| hypothetical protein HMPREF9475_01509 [Clostridium symbiosum WAL-14673] gi|323503550|gb|EGB19376.1| hypothetical protein HMPREF9475_01509 [Clostridium symbiosum WAL-14673] Length = 875 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 85/275 (30%), Positives = 125/275 (45%), Gaps = 23/275 (8%) Query: 562 SEWK-QEKNKLSHAKKIAEK---------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 S+W +E ++L KI E S K DFL+R+SHEIRTP+ AIIG + + Sbjct: 464 SDWSVEECSELQEVVKIIETNINRERYDLASRAKIDFLSRMSHEIRTPMNAIIGMTAIAM 523 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 ++ G E ID+S +L ++ND+LD+SKIESGKM L S+ + E Sbjct: 524 DRAKQEEGVK---ECLIKIDQSSQYLLSLINDILDMSKIESGKMKLACNNGSIMKMAEEI 580 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 L++ +K I P + ADL +KQ+ +N+ SNA+ FT GGQI S Sbjct: 581 DDLMESQMRQKNITCIRDIQVENPWVYADLMRLKQVIINLFSNAVKFTNEGGQIRFSVYE 640 Query: 732 TSNE----------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 E E V D G+G++ E+ F Q + GTGLGL ++ Sbjct: 641 QKMERRQPEDRNEAEFFFAVEDNGIGISPQNRERIFNAFEQAEDDTAAAYGGTGLGLSIS 700 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 +V G+ + S +G+ P Sbjct: 701 SRLVRMMGGEIGLESREGEGSRFSFTLRFIRAEEP 735 >gi|323486812|ref|ZP_08092130.1| hypothetical protein HMPREF9474_03881 [Clostridium symbiosum WAL-14163] gi|323399825|gb|EGA92205.1| hypothetical protein HMPREF9474_03881 [Clostridium symbiosum WAL-14163] Length = 1032 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 130/255 (50%), Gaps = 20/255 (7%) Query: 564 WKQEKNK-LSHAKKI---------AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 W +E+ + L+ KI A+ S K+DFL+R+SHEIRTP+ AI+G + + ++ Sbjct: 621 WTKEQRRVLAEIGKIVPSFVMKARADAVSQAKTDFLSRMSHEIRTPMNAIVGMTAIARS- 679 Query: 614 RFGPLGNP-RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 GN + +E +D S +L +VND+LD+S+IESGKM L+ P+ L +S Sbjct: 680 ---AAGNKEQVLECLEKLDNSSKYLLHLVNDILDMSRIESGKMELNPTPMLLSSFLSSID 736 Query: 673 SLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 +V++ K + R L AD ++Q+ LN++ NAI FT GG I + Sbjct: 737 EMVRMQTEAKGLSFTIQNDCRTERHLTADQLRLEQVLLNLIGNAIKFTDVGGSITLHIHP 796 Query: 732 TSNEEVILRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 E+ L +R DTG+G++ L F Q + + GTGLGL ++ +V Sbjct: 797 VKEEDTGLALRFSLADTGIGISPEVLPSIFNAFEQGAKNISSQYGGTGLGLAISSRLVQM 856 Query: 788 NMGKFYIFSTPAKGT 802 G + S P +G+ Sbjct: 857 MGGVLDVKSEPGRGS 871 >gi|213582822|ref|ZP_03364648.1| hybrid sensory histidine kinase TorS [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 610 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 84/247 (34%), Positives = 130/247 (52%), Gaps = 19/247 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK + KS FLA +SHEIRTPL I+G +++ ++ PL Y + I+ Sbjct: 132 QARAEAEKANEAKSTFLAAMSHEIRTPLYGILGTVQLLADK---PL-MANYRDDLQAIND 187 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHF--EPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG +L I+ND+LD S IE G N+ EP + ++ A+ L+ + ++ + T F Sbjct: 188 SGESLLAILNDILDYSAIEVGGTNVSISEEPFEPRQLLNSALHLMH---SRVQVALITDF 244 Query: 691 ANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 + +P L D R ++QI +N+LSNA FT G I+ T ++ + V DTG G+ Sbjct: 245 SEQLPSTLQGDPRRIRQIVINLLSNAAKFTDRGS--IVLRTFCDDQSWFIEVEDTGCGIP 302 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L KPF Q + RG GTGLGL ++ ++ +A G + ST G+ + P Sbjct: 303 EAKLTAIFKPFVQ---ATGCRG-GTGLGLAISASLAEAMGGTLTVTSTLHVGSCFRLQLP 358 Query: 810 LYDTSHP 816 + HP Sbjct: 359 V---RHP 362 >gi|116625119|ref|YP_827275.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116228281|gb|ABJ86990.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 618 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 79/252 (31%), Positives = 131/252 (51%), Gaps = 13/252 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q +L A+ A+ + KS FLA +SHE+RTPL+ I+ S+++ P Sbjct: 206 EQRTAELVIARDQADSANRAKSTFLANMSHELRTPLSVILASSDLLNESD----PTPDQR 261 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E + I SG +L +++++LD++KIESGK L L V I +++ A +K + Sbjct: 262 EDIDRISHSGKHLLGLIDNVLDVAKIESGKQELAIAASDLLSTVRMVIEMMRGRAEDKHL 321 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVIL 739 + A ++PR + D ++QI +N+L NAI FT G + + +E + Sbjct: 322 ALIYYQAPDVPRYVRVDAPKLRQILINLLGNAIKFTREGAVELRLSAKPGDEPGYAQFCF 381 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPN-SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + DTGVGM ++L++ +PF Q+ N SQQ GTGLGL + + V+ G + S Sbjct: 382 DINDTGVGMPQHDLDRIFEPFQQVGNPSQQ---AGTGLGLTITRRFVELMGGTLLVESEV 438 Query: 799 AKGTLIEIIFPL 810 +G+ + PL Sbjct: 439 GRGSCFVVKLPL 450 >gi|222147417|ref|YP_002548374.1| two component sensor kinase/response regulator hybrid [Agrobacterium vitis S4] gi|221734407|gb|ACM35370.1| two component sensor kinase/response regulator hybrid [Agrobacterium vitis S4] Length = 751 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 131/245 (53%), Gaps = 8/245 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +LS A + A+ + KS F+A + HEIRTPL AI+G +E+++ + ++ Sbjct: 231 ELSDAYEAADSGNRAKSQFMATMGHEIRTPLNAILGMAELLEYSQL----PSDALQSVKT 286 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--RILIR 687 I SG +L+++N++LD SKIE GK+ L V + IS++Q ++++ ++++ Sbjct: 287 IRSSGEALLEVINEILDYSKIEHGKLELEERAVDISSLAENTISIMQGRSDDQDNQLVLD 346 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VRDTG 745 + + + D ++Q+ LN+LSNAI FT +G + ++LR V DTG Sbjct: 347 IPVSLDALYVRTDPTRLRQVLLNLLSNAIKFTQNGVVTLRLREFYRGSALMLRFEVEDTG 406 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ L K KPF Q+ S + GTGLGL + K +V+ G+ + ST G++ Sbjct: 407 IGIDETGLAKLFKPFSQVDASISRKYGGTGLGLTICKQIVEKLGGELGMSSTVGVGSIFW 466 Query: 806 IIFPL 810 P+ Sbjct: 467 FELPV 471 >gi|117168636|gb|ABK32300.1| Jer7 [Sorangium cellulosum] Length = 1762 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 83/270 (30%), Positives = 137/270 (50%), Gaps = 17/270 (6%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KNQRFGPLGNP 621 E +Q + L + S +KS+FLA +SHE+RTPL +++ S+ + KN G Sbjct: 1058 EVEQARQALEEKARQLAITSKYKSEFLANMSHELRTPLNSLLILSDQLSKNTDRNLTG-- 1115 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 R +E+A I SGN +L ++ND+LD+SKIESG + + +S + Q A Sbjct: 1116 RQVEFAKTIHSSGNDLLALINDILDLSKIESGTVIVDVGELSFSDLQDYVERTFQHVAES 1175 Query: 682 KRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHTSNE 735 KR+ +FA N+P+++ D + V+Q+ N+LSN+ FT G ++ S NE Sbjct: 1176 KRLEFELNFAQNLPQVIYTDAKRVQQVLKNLLSNSFKFTERGSVALDVDLVTSGWTIENE 1235 Query: 736 -------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + + VRDTG+G+ + + + + F Q S + GTGLGL +++ + Sbjct: 1236 GLSRAGAAIAMSVRDTGIGIPHDKQQIIFEAFQQADGSTSRKYGGTGLGLAISREIAWML 1295 Query: 789 MGKFYIFSTPAKGTLIEIIFPL-YDTSHPH 817 G+ + S P G+ + PL Y + P Sbjct: 1296 GGEIKLSSRPGSGSTFTLYLPLTYTPARPR 1325 >gi|323484400|ref|ZP_08089766.1| hypothetical protein HMPREF9474_01517 [Clostridium symbiosum WAL-14163] gi|323402178|gb|EGA94510.1| hypothetical protein HMPREF9474_01517 [Clostridium symbiosum WAL-14163] Length = 1300 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 85/275 (30%), Positives = 125/275 (45%), Gaps = 23/275 (8%) Query: 562 SEWK-QEKNKLSHAKKIAEK---------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 S+W +E ++L KI E S K DFL+R+SHEIRTP+ AIIG + + Sbjct: 889 SDWSVEECSELQEVVKIIETNINRERYDLASRAKIDFLSRMSHEIRTPMNAIIGMTAIAM 948 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 ++ G E ID+S +L ++ND+LD+SKIESGKM L S+ + E Sbjct: 949 DRAKQEEGVK---ECLIKIDQSSQYLLSLINDILDMSKIESGKMKLACNNGSIMKMAEEI 1005 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 L++ +K I P + ADL +KQ+ +N+ SNA+ FT GGQI S Sbjct: 1006 DDLMESQMRQKNITCIRDIQVENPWVYADLMRLKQVIINLFSNAVKFTNEGGQIRFSVYE 1065 Query: 732 TSNE----------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 E E V D G+G++ E+ F Q + GTGLGL ++ Sbjct: 1066 QKMERRQPEDRNEAEFFFAVEDNGIGISPQNRERIFNAFEQAEDDTAAAYGGTGLGLSIS 1125 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 +V G+ + S +G+ P Sbjct: 1126 SRLVRMMGGEIGLESREGEGSRFSFTLRFIRAEEP 1160 >gi|294054418|ref|YP_003548076.1| integral membrane sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293613751|gb|ADE53906.1| integral membrane sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 780 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 88/269 (32%), Positives = 143/269 (53%), Gaps = 15/269 (5%) Query: 550 FSSCYSLTMHDISEWKQEKNKLS-HAKKIA---EKESSHKSDFLARVSHEIRTPLTAIIG 605 S YS + + +E K + A+K+A E+ + KS FLA +SHEIRTPL +IIG Sbjct: 363 LSRSYSEVEEQVRKRTRELQKATMKARKLADAAEEANMAKSAFLATMSHEIRTPLNSIIG 422 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FS++++ + I SG L+L+++ND+LD+SKIE+GK NL+ + L+ Sbjct: 423 FSDMLQETEL----DDEQCSDLEAIRSSGALLLELINDILDLSKIEAGKSNLNAVSLDLE 478 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724 E V E SL + +K + + FA ++P+ + D ++Q+ N+LSNA+ FT S G Sbjct: 479 ETVQEVSSLFKHGLRKKGVELEVEFAEDLPQFVTTDKLRLQQLLNNLLSNAVKFT-SKGI 537 Query: 725 IIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 I + + +E + V DTG+G+ ++LE+ + F Q +S GTGLGL Sbjct: 538 IHVRAWYEDRKEPEGPRYYVAVSDTGIGIPEHKLEEVFQAFTQADSSTTREYGGTGLGLA 597 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + K + G+ + S G+ + F Sbjct: 598 ICKRITHLMGGEISVVSRAGLGSTFKFYF 626 >gi|218887412|ref|YP_002436733.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758366|gb|ACL09265.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1162 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/286 (28%), Positives = 135/286 (47%), Gaps = 36/286 (12%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++ K+ + L K AE + KS+FLA +SHEIRTPL +G ++++ Sbjct: 654 DVTGRKEAEAALLREKGAAEAANLAKSEFLANMSHEIRTPLNGSLGMLQLLQTTTL---- 709 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + +Y S + +++D+LD+S++E+G++ L P +L+ + L A Sbjct: 710 DEEQQDYLTSAITSARRLTQLLSDVLDLSRVEAGRLALRAAPFALEGVAGSIRDIFLLPA 769 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFT------------------- 719 EK + + +P R++ D ++QIA N++ NAI FT Sbjct: 770 REKELELDIRLDPRLPARLVGDEARLRQIAFNLVGNAIKFTDTGSVTVELTPLGLPPAAR 829 Query: 720 PSGGQIIISTTHTSNE---------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 P+G +T+ + ++L VRDTG+G+ LE+ +PF Q+ S R Sbjct: 830 PAGNAAGDATSGPAGNTPAHRPAQLRLLLEVRDTGIGIPESHLERIFEPFSQLDGSHVRR 889 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP---LYDT 813 G GLGL + + +V G+ + STP GT I I P L+D Sbjct: 890 HGGAGLGLSIVRRLVALMGGELSLESTPGTGTNIFISLPFGALWDA 935 >gi|119486508|ref|ZP_01620566.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] gi|119456410|gb|EAW37541.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] Length = 1837 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/259 (31%), Positives = 134/259 (51%), Gaps = 12/259 (4%) Query: 560 DISEWKQ---EKNKL----SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 D++E KQ E+ +L A++ AE + K +FLA +SHE+R+PL I+G++ +++ Sbjct: 1434 DVTERKQAEAEREQLLARERSAREEAEAANRIKDEFLAVLSHELRSPLNPILGWANLLQR 1493 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 Q+ + + + + I+R+ L + +++DLLD+S+I GK+ L+ V L + AI Sbjct: 1494 QK---VDDQVFHQALTTIERNVKLQVQLIDDLLDVSRILRGKLKLNRSSVDLVVVILSAI 1550 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 V+L A K I IRT + ++L D ++QI N+LSN + F+ +GGQ+ I Sbjct: 1551 ETVRLAAEAKSIEIRTHLDTQVGKVLGDAGRLQQIVWNLLSNGVKFSETGGQVDIYLESV 1610 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 NE I RV+D G G+ L F Q + + G GLGL + + + + G Sbjct: 1611 GNEAQI-RVQDRGKGINPKFLPYVFDYFRQEDGTTTRKFGGLGLGLAIVHYITEMHGGTV 1669 Query: 793 YIFSTP-AKGTLIEIIFPL 810 S KG + PL Sbjct: 1670 QAESPGVGKGATFTVKLPL 1688 >gi|94500179|ref|ZP_01306713.1| probable sensor/response regulator hybrid [Oceanobacter sp. RED65] gi|94427752|gb|EAT12728.1| probable sensor/response regulator hybrid [Oceanobacter sp. RED65] Length = 908 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 82/243 (33%), Positives = 128/243 (52%), Gaps = 11/243 (4%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q +N+ + AE ES K++FLA +SHEIRTPL I+G S+++KN N Sbjct: 416 QAENESQQIRIAAEAESRAKNEFLAMMSHEIRTPLNGIMGMSDLLKNTNM----NETQSR 471 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y N I SG +L I+ND+LD SKI +GK+ + P+ L + + + + +K I Sbjct: 472 YVNTIYHSGESLLGIINDILDFSKILAGKLEIESVPIHLLDLLDQCAGIFAKDIEKKDID 531 Query: 686 IRTSF--ANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVR 742 + A +I I +D ++Q+ LN LSNAI FT G Q+I+S + + L+V+ Sbjct: 532 VTLELVPAKDIV-IESDPVRLRQVILNYLSNAIKFTQKGSVQLILSVEGNT---LNLKVK 587 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ + + F Q S + GTGLGL + K + + G + S +G+ Sbjct: 588 DTGIGIPPCKQASLFEAFAQADTSTTRQYGGTGLGLAICKKIAELMGGGVSVESNENEGS 647 Query: 803 LIE 805 + E Sbjct: 648 VFE 650 >gi|77459260|ref|YP_348767.1| periplasmic sensor hybrid histidine kinase [Pseudomonas fluorescens Pf0-1] gi|77383263|gb|ABA74776.1| sensor protein RcsC putative two-component system, sensor kinase [Pseudomonas fluorescens Pf0-1] Length = 936 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 77/259 (29%), Positives = 130/259 (50%), Gaps = 9/259 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS +Q + L A++ A+ + K+ FLA +SHEIRTPL ++G E++ + Sbjct: 429 DISARRQIEAALERARQSADAANEAKTLFLATMSHEIRTPLYGVLGTLELLARTQL---- 484 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + Y I+ S +L ++ D+LD+SKIE+G++ L S+ E + A Sbjct: 485 DTQQKSYLRAIEGSSATLLQLICDVLDVSKIEAGQLALELSDFSIVALAQEVVQGYAAAA 544 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEV 737 K + + F +P ++ D+ V+QI N+LSNA+ FT SG ++ ++ E V Sbjct: 545 QSKGLQLYACFDPQLPDSLIGDISRVRQILNNLLSNAVKFTDSGRVVLRVNVLSREGERV 604 Query: 738 IL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + +V DTG G+ + + +PF Q + + GTGLGLP+ + + G + Sbjct: 605 CVQWQVSDTGRGIAHDDQAFIFEPFYQTRGNSHVIA-GTGLGLPICLRLTNLMNGTLRMV 663 Query: 796 STPAKGTLIEIIFPLYDTS 814 S P G+ + PL S Sbjct: 664 SEPGLGSSFSLTLPLEQRS 682 >gi|115360386|ref|YP_777523.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD] gi|115285714|gb|ABI91189.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria AMMD] Length = 768 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 94/369 (25%), Positives = 166/369 (44%), Gaps = 25/369 (6%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++++A+ D I I+REG I+S N A ++FGY D +P + + + L + Sbjct: 257 AVVDASPDAIVGIDREGRIVSWNPAAQRIFGYDEADARGRPLETLVAMRW--LRRNPLAD 314 Query: 516 ILSLD-LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNK 570 S D +R+ + + L + + R + P C +L++ Q + Sbjct: 315 --SFDAMREAVGPLELLCVRRDGR-RFRATVSAGPVRGDARNCVALSLTLRETGAQRRRD 371 Query: 571 LS---------HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 L A+ A+ + K + LA VSHE+RTPL I G+ EV++N R L Sbjct: 372 LRTQRSLQGARDARDRADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNTRDDALEQ- 430 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + + IDRS + +V D+LD S + +GK+ + PV + S+ + Q A+ Sbjct: 431 ---QAIDAIDRSARSLTRMVGDILDASSLATGKLRIDPMPVDVVRLFSDTVGAFQTAASS 487 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 I++ A + + D ++Q+ N++SNA+ FTP GG + + T + +L V Sbjct: 488 AGIVLEFECAASACVVSGDAERLRQMLANLVSNALKFTPGGGAVTV-TLSRDDAHAVLVV 546 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA-K 800 DTG G+ + F + +S G GLGL + + + + G+ + S + Sbjct: 547 ADTGQGIPPAFIPHVFDMFRRADDSPASPRRGLGLGLSIVRHIAGLHGGQVRVESAGRNR 606 Query: 801 GTLIEIIFP 809 G + P Sbjct: 607 GATFTVTLP 615 >gi|300787746|ref|YP_003768037.1| two-component system sensor kinase [Amycolatopsis mediterranei U32] gi|299797260|gb|ADJ47635.1| two-component system sensor kinase [Amycolatopsis mediterranei U32] Length = 1361 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 114/226 (50%), Gaps = 4/226 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K+ F A +SHE RTPLT I+G + ++ G R E + I R+ + +VN+L Sbjct: 336 KTTFFANISHEFRTPLTLILGPAAELREALAG--AGERVREEVDVIQRNALRLGRLVNNL 393 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD S+IE+G+M FEPV L +E S+ + + + + D Sbjct: 394 LDFSRIEAGRMQARFEPVDLGTFTAELASVFRAAVERAGLAFDVDCRPSDEPVHVDRGMW 453 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +++ N+LSNA+ FT G + S + ++ V DTG+G+ EL + + F +IP Sbjct: 454 EKVVFNLLSNAVKFTFDGAIRVTSAVEAGH--AVIAVSDTGIGIDAAELPRLFERFHRIP 511 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +++ EG+G+GL L + +V + G + STP GT + PL Sbjct: 512 SARARSNEGSGIGLALVRELVGMHGGSVAVESTPGAGTTFRVRVPL 557 >gi|171689512|ref|XP_001909696.1| hypothetical protein [Podospora anserina S mat+] gi|170944718|emb|CAP70829.1| unnamed protein product [Podospora anserina S mat+] Length = 2091 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 88/277 (31%), Positives = 132/277 (47%), Gaps = 23/277 (8%) Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 S + + DI++ K + KL A KS FL+ +SHEIRTPL I G ++ Sbjct: 1386 SSFFGSATDINDLKLLETKLKEAMD-------SKSRFLSNMSHEIRTPLIGISGMVSFLQ 1438 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + N +Y N I S N +L I+ND+LD+SK+++G M L+FE + + Sbjct: 1439 DTTL----NEEQRDYTNTIQTSANSLLMIINDILDLSKVDAGMMKLNFEWFHTRSLIEDV 1494 Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG------GQ 724 LV A KR+ + ++P + D ++Q+ LN++ NAI FT G Sbjct: 1495 NELVSTMAIAKRLELNYVVEEDVPAWVKGDKVRIRQVLLNVIGNAIKFTSQGEVFSRCKV 1554 Query: 725 IIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 I+ E++L V DTG G T E E KPF QI S + G+GLGL +++ Sbjct: 1555 IVPEGVELGKAEIMLEFSVIDTGRGFTEQEAELIFKPFSQIDGSSTRQHGGSGLGLVISR 1614 Query: 783 AMVDANMGKFYIFSTPAKGTLIEII--FPL-YDTSHP 816 + + + G + P KG+ F L DT HP Sbjct: 1615 QLAELHGGTMNGTAVPGKGSTFTFTARFGLPTDTDHP 1651 >gi|26248608|ref|NP_754648.1| sensory histidine kinase AtoS [Escherichia coli CFT073] gi|26109013|gb|AAN81216.1|AE016763_175 Sensor protein atoS [Escherichia coli CFT073] Length = 612 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 188/398 (47%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 233 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 292 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 293 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 345 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 346 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 400 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q P+ + EY + + + + + ++ LL+ S+ Sbjct: 401 AHEVRNPLTAIRGYVQILRQQTRDPI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 456 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 457 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL 512 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 513 INAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLSLQKKIFDPFF------TTKAS 566 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 567 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 604 >gi|158318722|ref|YP_001511230.1| GAF sensor hybrid histidine kinase [Frankia sp. EAN1pec] gi|158114127|gb|ABW16324.1| GAF sensor hybrid histidine kinase [Frankia sp. EAN1pec] Length = 1159 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 131/257 (50%), Gaps = 16/257 (6%) Query: 559 HDI----SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 HDI +E +Q + +L + S +KS+FLA +SHE+RTPL +++ + ++ Sbjct: 687 HDIEVKNAEIEQARQELEERARQLALASKYKSEFLANMSHELRTPLNSLLILARLLAQN- 745 Query: 615 FGPLGN--PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 P N + +EYA+ I +G+ +L ++ND+LD+SK+E+GKM++H E V L + + Sbjct: 746 --PTRNLTAKQVEYAHVIHTAGSDLLQLINDILDLSKVEAGKMDIHLERVVLRDLAEDLK 803 Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTT 730 S EK + A IP +L D + Q+ N+LSNA+ FT G ++ I T Sbjct: 804 STFSPITVEKGLRFTVDLAPGIPADLLTDQHRLAQVLRNLLSNAVKFTERGSVELAIVAT 863 Query: 731 -----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + V +V DTGVG+ LE+ F Q + R GTGLGL + + + Sbjct: 864 LGGDLSPATPSVTFKVTDTGVGIAEENLERIFGAFQQGDGTTSRRYGGTGLGLSICREVA 923 Query: 786 DANMGKFYIFSTPAKGT 802 G+ S +G+ Sbjct: 924 ALLGGEIEARSEFGRGS 940 >gi|300723733|ref|YP_003713040.1| hybrid sensory histidine kinase [Xenorhabdus nematophila ATCC 19061] gi|297630257|emb|CBJ90908.1| hybrid sensory histidine kinase in two-component regulatory system with RcsB and YojN, regulates capsule biosynthesis, cell division genes, OsmC expression [Xenorhabdus nematophila ATCC 19061] Length = 930 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 83/254 (32%), Positives = 134/254 (52%), Gaps = 9/254 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L AE+ + KS FLA VSHE+RTPL IIG E+I++ P Sbjct: 424 DVSTRVKMEKSLQEMATAAEQANQAKSMFLATVSHELRTPLYGIIGNLELIQSHLLPP-E 482 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + R + N S +L+L I++D+LD SKIES ++ + + S E +S IS Sbjct: 483 STRLLATMN---NSSSLLLKIISDILDFSKIESKQLKIEPKDFSCKEVISHVISNYLPLI 539 Query: 680 NEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEV 737 +K + + N+P I+ D ++QI N+L+NAI FT SG +I I + H + Sbjct: 540 AKKALGLYCYIEPNVPNIIRNDPVRLQQIISNLLNNAIKFTASGCVVIEIVSKHGY---L 596 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 ++DTG+G+ + + +PF QI +++ +GTGLGL + + +++ G S Sbjct: 597 YFSIKDTGLGIEDKLQFQLFEPFFQISANKESSPQGTGLGLAICEKLINLMDGDIEFISQ 656 Query: 798 PAKGTLIEIIFPLY 811 G++ I PLY Sbjct: 657 KYVGSIFSIRIPLY 670 >gi|206563353|ref|YP_002234116.1| hybrid two-component system kinase-response regulator protein [Burkholderia cenocepacia J2315] gi|198039393|emb|CAR55359.1| hybrid two-component system kinase-response regulator protein [Burkholderia cenocepacia J2315] Length = 660 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 87/272 (31%), Positives = 136/272 (50%), Gaps = 16/272 (5%) Query: 555 SLTMHDISEWKQ-EKNKLSH------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 SLT+ + E ++ E++ L A+ A+ + K + LA VSHE+RTPL I G+ Sbjct: 246 SLTLREAGERRRDERHHLRSLRGARDARVQADASNRLKDELLATVSHELRTPLNVIYGWV 305 Query: 608 EVIKNQRFGPLGNPRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 EV++N P +++ A IDRS + +V DLLD S + +G++ L PV L Sbjct: 306 EVLRNAD-----GPGFVQQAVAAIDRSARSLSHMVADLLDASSLATGRLRLERVPVDLVR 360 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 V +A + A +++ T +A I AD ++Q+ N+LSNAI FTP GG+I Sbjct: 361 IVRDAARELDATAQANGLVLSTEYAMPACVIPADGERLRQVLSNLLSNAIKFTPPGGRIN 420 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 +S T + E V L V DTG G+ L + F + + G GLGL + + + Sbjct: 421 VSLTR-AGERVRLSVSDTGQGIAPERLPHLFETFSRPEGAFTSPKRGLGLGLSIVRNIAQ 479 Query: 787 ANMGKFYIFSTPA-KGTLIEIIFPL-YDTSHP 816 + G+ S A +GT + + P +D P Sbjct: 480 LHGGEVVATSAGAGRGTTVTVTLPAGWDADDP 511 >gi|169335410|ref|ZP_02862603.1| hypothetical protein ANASTE_01822 [Anaerofustis stercorihominis DSM 17244] gi|169258148|gb|EDS72114.1| hypothetical protein ANASTE_01822 [Anaerofustis stercorihominis DSM 17244] Length = 526 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/251 (31%), Positives = 125/251 (49%), Gaps = 17/251 (6%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A K A+ + KS+FL+ +SH+IRTP+ AI+G +E+ + L + + Sbjct: 272 ELQKALKEAKNANRAKSEFLSSMSHDIRTPMNAIMGMTEI---AQMNILNTDKVNDCLKK 328 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG +L ++ND+LD+SKIESGKM L + SL E + +S++Q + S Sbjct: 329 ISISGQHLLGLINDVLDMSKIESGKMTLRNDSASLPEVLENVVSILQPMVKSR----EQS 384 Query: 690 FANNIPRILA-----DLRSVKQIALNILSNAIHFTPSGGQIIIS-----TTHTSNEEVIL 739 F+ I ++ D ++Q +NILSNA FTP G I + T +++ Sbjct: 385 FSIRIRNLVHEDFYFDALRLRQCFINILSNATKFTPEKGSITVDVEEEYTGDPDYSKLMF 444 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 DTG+G+ L F + + + + EG+GLG+ + K +VD G + S Sbjct: 445 TFTDTGIGIKEEFLNNIFDSFTREKDGRVDKTEGSGLGMAITKKIVDIMNGTIEVKSKVG 504 Query: 800 KGTLIEIIFPL 810 GT + PL Sbjct: 505 MGTTFIVTLPL 515 >gi|149925435|ref|ZP_01913699.1| sensory box histidine kinase/response regulator [Limnobacter sp. MED105] gi|149825552|gb|EDM84760.1| sensory box histidine kinase/response regulator [Limnobacter sp. MED105] Length = 538 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 140/257 (54%), Gaps = 12/257 (4%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +I +Q + L ++++A + ++ FLA +SHEIRTP+ ++G +++ + Sbjct: 130 QEIVSRRQSEASLRQSQELALQAQKTQAAFLANMSHEIRTPMNGVLGTLDLLLDTEL--- 186 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P ++ A RS +L ++ND+LDISK+ESG++ L P+ L + ++ + + Sbjct: 187 -KPEQLQLAAASKRSAASLLSLLNDILDISKVESGQLTLRHSPLELADVFADVEAALAFD 245 Query: 679 ANEKRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIIS--TTHTSN 734 AN K I ++ A +P L D ++QI LN++ NAI FT G ++ + T+ Sbjct: 246 ANSKGIELQCP-AERVPNTIYLGDSVRMRQILLNLVGNAIKFTDVGHVKVVCQEVSRTAQ 304 Query: 735 EEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + V+ V+DTG+G+ + K F Q+ NS R +G+GLGL + K +V+ GK Sbjct: 305 QAVLEFTVKDTGIGIAPEHQKNLFKRFTQVDNSSTRRAQGSGLGLAIVKELVELMGGKVR 364 Query: 794 IFSTPAKGTLIEIIFPL 810 + S P +GT EI+F L Sbjct: 365 LHSEPGRGT--EIVFSL 379 >gi|298374421|ref|ZP_06984379.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] gi|298268789|gb|EFI10444.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] Length = 882 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 133/257 (51%), Gaps = 23/257 (8%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D+++ KQ +N+L AK+ AE+ KS FLA +SHEIRTPL AI+GFS G L Sbjct: 502 EDVTKQKQAENELRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFS--------GLL 553 Query: 619 GNPRYI----EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 + EY N I+ + +L+L ++ND+LD++KIE+G + V +++ S+ Sbjct: 554 AVTENMEDKEEYINIINSNNDLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQS 613 Query: 675 VQLYANEKRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +L A + ++ F IP + D V Q+ N ++NAI FT + G I+ H Sbjct: 614 SRLKAQDG---VQVCFVEKIPNCILRTDRNRVSQVITNFINNAIKFT-TQGSILFGYRH- 668 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++E+ V+DTG G+ ++ + F ++ + Q GTGLGL + + ++ G Sbjct: 669 RDDELYFYVKDTGCGIAKDKIGQVFTRFVKLNSFVQ----GTGLGLSICQMIIKRLGGDI 724 Query: 793 YIFSTPAKGTLIEIIFP 809 + S KG+ P Sbjct: 725 GVESEQGKGSTFWFTLP 741 >gi|270000570|ref|NP_844382.2| sensor histidine kinase [Bacillus anthracis str. Ames] gi|269850218|gb|AAP25868.2| sensor histidine kinase [Bacillus anthracis str. Ames] Length = 465 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 125/251 (49%), Gaps = 13/251 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E + + L+H EK K++F+A +SHEIRTPLT I G+SE +K L Sbjct: 226 GELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKT--VDHLTEE 283 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + I + ++ +V +LLD S+++S NL+ + V L + + E I + A E Sbjct: 284 EIKQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEE 343 Query: 682 KRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K++ F I RI + D +KQI LNI+ NAI ++ G++ I T + VI Sbjct: 344 KKM----QFIKTIERIELIGDRNRLKQIFLNIVQNAIKYSHENGKVYIEATKNEGQAVI- 398 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 +V+D G+G+ L + F QI N G GLGL + K MV+ + G I S Sbjct: 399 KVKDDGIGIAKEHLPYIEQSFYQINN----HATGAGLGLAIVKKMVELHGGTINIISKEG 454 Query: 800 KGTLIEIIFPL 810 GT I I PL Sbjct: 455 IGTTILIKLPL 465 >gi|228927068|ref|ZP_04090133.1| hypothetical protein bthur0010_17830 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832575|gb|EEM78147.1| hypothetical protein bthur0010_17830 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 444 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 125/251 (49%), Gaps = 13/251 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E + + L+H EK K++F+A +SHEIRTPLT I G+SE +K L Sbjct: 205 GELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKT--VDHLTEE 262 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + I + ++ +V +LLD S+++S NL+ + V L + + E I + A E Sbjct: 263 EIKQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEE 322 Query: 682 KRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K++ F I RI + D +KQI LNI+ NAI ++ G++ I T + VI Sbjct: 323 KKM----QFIKTIERIELIGDRNRLKQIFLNIVQNAIKYSNENGKVYIEATKNEGQAVI- 377 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 +V+D G+G+ L + F QI N G GLGL + K MV+ + G I S Sbjct: 378 KVKDDGIGIAKEHLPYIEQSFYQINN----HATGAGLGLAIVKKMVELHGGTINIISKEG 433 Query: 800 KGTLIEIIFPL 810 GT I I PL Sbjct: 434 IGTTILIKLPL 444 >gi|163814352|ref|ZP_02205741.1| hypothetical protein COPEUT_00503 [Coprococcus eutactus ATCC 27759] gi|158449987|gb|EDP26982.1| hypothetical protein COPEUT_00503 [Coprococcus eutactus ATCC 27759] Length = 765 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 88/263 (33%), Positives = 135/263 (51%), Gaps = 16/263 (6%) Query: 561 ISEWKQEKNKLSHAKKIA-------EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 ISE ++ L AK IA E + K+DFL+ +SH+IRTP+ AIIG +I Sbjct: 347 ISEMEEANKNLKKAKNIAIEALQTAENANKAKTDFLSNMSHDIRTPMNAIIGIISLI--- 403 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 R + IEYA+ I S +L I+ND+LD+SKIE+GK + S+ +++ E + Sbjct: 404 RHNAGDKEKVIEYADKIAISSQHLLGIINDVLDMSKIEAGKTVFKYSDFSILDSIEELNT 463 Query: 674 LVQLYANEK-RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG--QIIISTT 730 + ANEK + I T + D + QI N+LSNAI +T GG Q I + Sbjct: 464 IFHSQANEKNQSFIITKGNLKHEWVNGDKVHLMQIFSNLLSNAIKYTQEGGIIQFIAEES 523 Query: 731 HTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 T++ + V D G+GM+ E F + +S + +GTGLG+ + K +V++ Sbjct: 524 ETNSSTYGKYHFIVSDNGMGMSADFKETIFDAFTRAESSVTNKIQGTGLGMAITKNLVES 583 Query: 788 NMGKFYIFSTPAKGTLIEIIFPL 810 G + S P +G+ E+I L Sbjct: 584 MGGTIEVESEPNRGSSFEVILNL 606 >gi|115372967|ref|ZP_01460271.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] gi|310818670|ref|YP_003951028.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115370045|gb|EAU68976.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] gi|309391742|gb|ADO69201.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 956 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/265 (30%), Positives = 140/265 (52%), Gaps = 13/265 (4%) Query: 554 YSLTMHDISEWKQEKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 Y ++ DI+E KQ ++ + S A++ A++ + K +FLA VSHE+RTPLTA++G+ Sbjct: 539 YIGSLLDITERKQAEDEREGLLARESAARQEAQEANRLKDEFLATVSHELRTPLTAMLGW 598 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 +++ R G L ++ ++R+ ++ DLLD+S+I SGK+ L EPV + Sbjct: 599 VQML---RTGNLPAGKHARALETVERNARAQSQLIEDLLDVSRIMSGKLRLDVEPVEVSV 655 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 V A+ V+ A+ K I ++ + ++ ++ D + ++Q+ N+LSNA+ FTP GG++ Sbjct: 656 VVEHALESVRPAADAKHIRLQAAV-DSTSHVMGDAQRLQQVVWNLLSNAVKFTPKGGRVQ 714 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + + V + V DTG G+ L F Q S G GLGL + + +V+ Sbjct: 715 V-FVERRDSSVDITVADTGHGIAAKFLPHVFDRFRQADGSTTRSAGGLGLGLSIVRQLVE 773 Query: 787 ANMGKFYIFS-TPAKGTLIEIIFPL 810 + G FS KG + P+ Sbjct: 774 LHGGTVSAFSEGEGKGATFTVTLPM 798 >gi|91211513|ref|YP_541499.1| sensory histidine kinase AtoS [Escherichia coli UTI89] gi|331647874|ref|ZP_08348966.1| signal transduction histidine-protein kinase AtoS [Escherichia coli M605] gi|91073087|gb|ABE07968.1| sensor protein AtoS [Escherichia coli UTI89] gi|331043598|gb|EGI15736.1| signal transduction histidine-protein kinase AtoS [Escherichia coli M605] Length = 612 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 188/398 (47%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 233 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 292 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 293 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 345 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 346 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 400 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q P+ + EY + + + + + ++ LL+ S+ Sbjct: 401 AHEVRNPLTAIRGYVQILRQQTRDPI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 456 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 457 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL 512 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 513 INAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLSLQKKIFDPFF------TTKAS 566 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 567 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 604 >gi|319651062|ref|ZP_08005196.1| sensor protein [Bacillus sp. 2_A_57_CT2] gi|317397232|gb|EFV77936.1| sensor protein [Bacillus sp. 2_A_57_CT2] Length = 607 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 101/380 (26%), Positives = 173/380 (45%), Gaps = 40/380 (10%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E E +L S+L +DG+ +R+G ++ N +K+ E +L P L Sbjct: 259 EGERRKLSSVLSYMTDGVIATDRKGRVILINEPAAKMLNVSRETVLSSPIVSLLGLEEDY 318 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR----IIIKKLPFSSCYSLTMHDISE 563 L E + + L + + K L LR +I K+ F + +HDI+E Sbjct: 319 NFEELLNE---------RDSVILDYSSKSKTLILRANFSVIQKETGFVNGLITVLHDITE 369 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 EK + +F+A VSHE+RTPLT + + E + G R Sbjct: 370 --------------QEKIDMERREFVANVSHELRTPLTTMRSYLEALAE------GAWRD 409 Query: 624 IEYA-NYIDRSGN---LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 E A N++D + N ++ +VNDLL +SK++S L + + I ++ Sbjct: 410 EEIAPNFLDVTQNETERMIRLVNDLLQLSKMDSKDYRLTKDWTDFIFFYNRIIDRFEM-T 468 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 ++ + ++ + D + Q+ NI+SNA+ ++P GG++ S +E +++ Sbjct: 469 KQQNVTFERKLPDHSAFVEIDEDKLTQVLDNIISNALKYSPEGGKVTFSIEE-KDEFIVV 527 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V D GVG+ +++ + F ++ ++ + GTGLGL +AK MV+A+ GK + ST Sbjct: 528 SVSDQGVGIPKENIDQIFERFYRVDKARTRKLGGTGLGLAIAKEMVEAHGGKIWAASTEG 587 Query: 800 KGTLIEIIFPLYDTSHPHDC 819 KGT I P Y S D Sbjct: 588 KGTTISFSLP-YVRSEEDDW 606 >gi|298481017|ref|ZP_06999212.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. D22] gi|298273040|gb|EFI14606.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. D22] Length = 885 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 129/257 (50%), Gaps = 12/257 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E + K +L +K+ AE S KS FLA +SHEIRTPL AI+GFS +I Sbjct: 486 DITELEIIKRELQSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESDDAEER 545 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 Y N ++ + +L ++N++LD+SKIESG + F P SL E + ++ Sbjct: 546 KT----YYNIVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCRE-VHDAHIFR 600 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + + + ++ I D V Q+ N++ NA+ FT G I + +++ Sbjct: 601 TPQGVSLVYESSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS--ISYGYKLVDNQIVF 658 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG G+ ++ + + F ++ N Q GTGLGL + K++V+ GK + S Sbjct: 659 HVTDTGTGIEPEKVGRVFERFAKLNNHAQ----GTGLGLSICKSIVERLGGKISVNSEFG 714 Query: 800 KGTLIEIIFPLYDTSHP 816 KGT P Y ++P Sbjct: 715 KGTTFTFTLP-YTIANP 730 >gi|209527277|ref|ZP_03275787.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209492265|gb|EDZ92610.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1051 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 70/260 (26%), Positives = 137/260 (52%), Gaps = 18/260 (6%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q+ +L A + KS+FLA +SHE+RTPL AI+GF+++++ R ++ Sbjct: 547 QQQAAELKRVADAANVANRAKSEFLANMSHELRTPLNAILGFTQLLQRDRTLA---AKHQ 603 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EY +++SG +L+++ND+L++SKIE+G++ + + + ++QL A K + Sbjct: 604 EYIKIVNQSGQHLLELINDVLEMSKIEAGRITCNPTEFDIKRCLPAIQVMLQLKAESKGL 663 Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG--------GQI-----IISTT 730 + ++P+ + D ++Q+ +N++SNAI FT G G + + Sbjct: 664 TLNFQVEESVPKFVRTDESKLRQVLVNLISNAIKFTQDGEVSLRVSVGGVDEDLGLSDED 723 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 SN ++ + DTG G+ + E+ + F Q ++ + +GTGLGL +++ V+ G Sbjct: 724 WVSNTYLLFEIIDTGCGIASEEINDLFQAFKQTKAGRESQ-QGTGLGLVISQRFVNLMGG 782 Query: 791 KFYIFSTPAKGTLIEIIFPL 810 + + S P +G+ P+ Sbjct: 783 EIKVSSKPGEGSCFSFQIPV 802 >gi|114319827|ref|YP_741510.1| periplasmic sensor signal transduction histidine kinase [Alkalilimnicola ehrlichii MLHE-1] gi|114226221|gb|ABI56020.1| periplasmic sensor signal transduction histidine kinase [Alkalilimnicola ehrlichii MLHE-1] Length = 917 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 77/240 (32%), Positives = 125/240 (52%), Gaps = 14/240 (5%) Query: 580 KESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP-----RYIEYANYIDRS 633 KE H K +F++ VSHE+RTPLT+I F E++ L NP + E+ + + Sbjct: 674 KELDHLKDEFVSMVSHELRTPLTSIRAFGEIL-------LSNPELDAEQRKEFLQVVVKE 726 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 + ++N +LD+SKIESG H E + L++ V EA + ++ R+ ++ Sbjct: 727 SERLTRLINQVLDLSKIESGAAEWHLETLDLNQVVQEAADATRQIFHDTRVDLQVKAPEQ 786 Query: 694 IPRILADLRSVKQIALNILSNAIHFT-PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 I D + Q+ +N+LSNA FT P G++ +S S ++ LRV+D G G++ E Sbjct: 787 PTIITGDHDRLIQLVINLLSNAAKFTDPDNGRVEVSVVPVSARKLELRVQDNGPGISEAE 846 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 K F Q+ + Q + +G+GLGL + K ++DA+ G + S P G FP+ D Sbjct: 847 QRKIFDKFHQVSSQQAGKPKGSGLGLAICKLIMDAHSGDIRVESEPGAGATFICEFPVGD 906 >gi|163848410|ref|YP_001636454.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|163669699|gb|ABY36065.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] Length = 403 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 126/242 (52%), Gaps = 21/242 (8%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 + D +A VSHE+RTPL ++ E +++ + + + A ID V +V++L Sbjct: 164 RRDLVANVSHELRTPLASLKLLVETVQSAPPPDIASRMLEQMAQEID----AVTQLVDEL 219 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 ++S++ESG+++L EP+ + + A+ ++ A+ K+ +I A ++P L D + Sbjct: 220 HELSRLESGRVSLKLEPLPVWPVIERAVERIRPQADRKQQVICVEPAADLPLALMDGDRI 279 Query: 705 KQIALNILSNAIHFTPSGGQIIIST-----------------THTSNEEVILRVRDTGVG 747 Q+ LN+L NA+ FTP GG I ++ H + +++RV DTG+G Sbjct: 280 GQVLLNLLHNAVKFTPEGGTITVAAEVLTLRDDEQPSRPDRPPHPAGTWLLIRVSDTGIG 339 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + N ++++ + F ++ ++ GTGLGL +AK +V+ + G+ + S G+ Sbjct: 340 IPNRDIQRIFERFYKVDRARTRHAGGTGLGLAIAKHLVEGHGGRIWASSQEGHGSTFWFT 399 Query: 808 FP 809 P Sbjct: 400 LP 401 >gi|117923777|ref|YP_864394.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607533|gb|ABK42988.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1314 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 83/269 (30%), Positives = 133/269 (49%), Gaps = 10/269 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ K + L AK AE S KS FLA +SHEIRTP+ AI+G S + Q Sbjct: 558 TFTDITARKDMEAALHDAKVEAESASRAKSRFLANMSHEIRTPMNAILGLSSLALEQA-- 615 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 R ++ I+ SG+ ++ ++ND+LD+SKIE+ +M+L +P LDE + + + V Sbjct: 616 --KEARQRDFLEKINHSGHFLMGLLNDILDLSKIEAERMDLESQPFRLDELLKQLAANVL 673 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---- 731 K + + A+ P ++ D + Q+ N+LSNA+ FT G I T Sbjct: 674 PAMRNKAVEVHFFIASGTPLALVGDALRLGQVLHNLLSNAMKFTHEGEVRITLTAEPYVQ 733 Query: 732 -TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 T + V+D+G+G+ K + F Q +S + G+GLGL + + +++ G Sbjct: 734 LTDHYLFTFEVKDSGIGIPAEVQPKLFESFIQADSSTTRQYGGSGLGLAICRRLMEMMHG 793 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 K + S+ +G+ PL S C Sbjct: 794 KITLQSSLGQGSTFTCRLPLQIQSCTVTC 822 >gi|283851414|ref|ZP_06368695.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573152|gb|EFC21131.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 699 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 92/354 (25%), Positives = 164/354 (46%), Gaps = 47/354 (13%) Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS----------VMNHYLTEILSLDLR 522 IIL N + +++ GY E++ + V + P + + L + R Sbjct: 206 IILDVNNSFTEILGYGREEVRGQNVGVLGLIDAPGSGAGLETLLETEGRFSDQELVVRTR 265 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 + +I L S ++ R +I Q+ L A++ AE+ + Sbjct: 266 EGASRIILASADVVQVAGQRYLIA-----------------GGQDVTDLHEAREDAERAN 308 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 KS+FLA +SHEIRTPL I+G + + + + EY +SG +L I+N Sbjct: 309 RAKSEFLANMSHEIRTPLNGILGMTSLA----LMTCTDHKGREYLGLAQQSGQHLLGIIN 364 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADL 701 D+LDISKIES + L + E + +++ A+ K + + A ++P ++ D Sbjct: 365 DILDISKIESQRFELEKAEFNPRETLENLFQTMRVEADAKGVRFDATVAPDVPDCVIGDE 424 Query: 702 RSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEE----------VILRVRDTGVGM 748 ++QI +N++ N+I FT +G ++ ++ T E +I +RDTG+G+ Sbjct: 425 GRLRQIYVNLIGNSIKFTTAGEVEVRVAVAATDGRREPAAMGGKGRICLISSIRDTGIGI 484 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 L++ F Q+ S R GTGLGL ++K +V+ G+ ++ S P +G+ Sbjct: 485 PQKNLKRIFDTFAQV--SVGARYGGTGLGLSISKRLVELMGGRIWVESEPGRGS 536 >gi|257093802|ref|YP_003167443.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046326|gb|ACV35514.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 835 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 97/314 (30%), Positives = 151/314 (48%), Gaps = 11/314 (3%) Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS---SCYSLTMHDISEWK 565 + L ++L+ Q LE + +E+ + +R + + S + + D+SE K Sbjct: 389 LAEALAQVLATGAAQRLEHRVVRPDGDERTVEVRAQVLCTDLAGRISTLTGVVQDVSERK 448 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q + +L AK+ AE S KS FLA +SHEIRTP+ +IG + R Sbjct: 449 QIERELIAAKEAAEAASKAKSAFLANMSHEIRTPMNGVIG----VAELLLTEALEERARH 504 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 YA I RSG +L +++D+LD+SKIE+G++ L L E V E L A K Sbjct: 505 YAETIQRSGRALLGVLDDVLDLSKIEAGRLELESVRFDLPELVREMSDLFGEAARAKGAR 564 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VR 742 + S A +PR + DL ++Q+ LN++SNA+ F+ G I I H + + LR VR Sbjct: 565 LVVSVAPAVPRWVEGDLVRLRQVLLNLVSNAVKFSAR-GIIEIELRHDGDGDGALRFAVR 623 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D G+G+ + + F Q R GTGLGL +A+ +V + ST +G+ Sbjct: 624 DQGLGIAPDKQARIFDAFAQADQGTTRRFGGTGLGLSIARQLVRLMGSDIGLHSTLGEGS 683 Query: 803 LIEIIFPLYDTSHP 816 L + + P Sbjct: 684 CFWFCLRLPEVAPP 697 >gi|213161958|ref|ZP_03347668.1| hybrid sensory histidine kinase TorS [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 725 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 84/247 (34%), Positives = 129/247 (52%), Gaps = 19/247 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AEK + KS FLA +SHEIRTPL I+G +++ ++ PL Y + I+ Sbjct: 433 QARAEAEKANEAKSTFLAAMSHEIRTPLYGILGTVQLLADK---PL-MANYRDDLQAIND 488 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHF--EPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG +L I+ND+LD S IE G N+ EP + ++ A+ L+ + ++ + T F Sbjct: 489 SGESLLAILNDILDYSAIEVGGTNVSISEEPFEPRQLLNSALHLMH---SRVQVALITDF 545 Query: 691 ANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 + +P L D R ++QI +N+LSNA FT G I+ T ++ + V DTG G+ Sbjct: 546 SEQLPSTLQGDPRRIRQIVINLLSNAAKFTDRGS--IVLRTFCDDQSWFIEVEDTGCGIP 603 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L KPF Q RG GTGLGL ++ ++ +A G + ST G+ + P Sbjct: 604 EAKLTAIFKPFVQATGC---RG-GTGLGLAISASLAEAMGGTLTVTSTLHVGSCFRLQLP 659 Query: 810 LYDTSHP 816 + HP Sbjct: 660 VR---HP 663 >gi|189500689|ref|YP_001960159.1| histidine kinase [Chlorobium phaeobacteroides BS1] gi|189496130|gb|ACE04678.1| histidine kinase [Chlorobium phaeobacteroides BS1] Length = 671 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 137/242 (56%), Gaps = 20/242 (8%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI------KNQRFGPLGNPRYI 624 L +A+ AE + KS+FLA +SHE+RTPL A+IG +E++ K+QR+ Sbjct: 273 LKNARIEAESANKAKSEFLANISHELRTPLHAVIGMTELLIETTLDKDQRY--------- 323 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 Y++ + S ++L ++ND+LD S+IE+G+++ E +L + + + I++++ A+ K + Sbjct: 324 -YSDTLYSSAQMLLMLINDILDFSRIEAGRIDEDKEVFNLRQLLQDIIAIMKEKASCKGL 382 Query: 685 LIRTSFANNIPRILADLRS-VKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILR-- 740 ++ + NIP +++ +KQ+ LN++ NAI FT G + T + ++V L+ Sbjct: 383 VLASDIDENIPSVISGYPGYIKQVLLNLIQNAIKFTYRGQVTVTVTVVSETPQDVSLKVS 442 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+DTG+G+ + PF QI S + GTGLGL + + ++ G+ + S+ Sbjct: 443 VQDTGIGIPEEQQHLIFNPFTQIDASSTRKEGGTGLGLAIVRKLIAFMGGEIQVTSSERD 502 Query: 801 GT 802 G+ Sbjct: 503 GS 504 >gi|218782281|ref|YP_002433599.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218763665|gb|ACL06131.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1152 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 99/396 (25%), Positives = 194/396 (48%), Gaps = 39/396 (9%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 +D++ + KRK E + +I + D + +G IL + ++S++ Y DIL + Sbjct: 344 KDLEAELAKRKEAEEKYR--TIFDNIQDVYFETSLDGAILEISPSISRVSEYGRTDILGR 401 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL----GSTKEEKLLSLRIIIKKLPFS 551 F + + M +L I++ + E + L G+ K+ L S R+++K+ Sbjct: 402 AVGDF--RMSKEAMADFLRRIITQGEVRDFE-VRLQNRNGAFKDFSLNS-RLVLKENGAP 457 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH---------------------KSDFLA 590 M D++E +Q + +L AK+ E+ ++ KS FLA Sbjct: 458 DKIVGVMRDVTERRQAQQELLAAKERLEEANAQLEASIKQAEQLANEAFVANNAKSQFLA 517 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SHEIRTP+ IIG + ++ + PL + + + + +S + ++ I+ND+LD SK+ Sbjct: 518 NMSHEIRTPMNGIIGMAALLLDT---PLDGQQTV-FVQTVRKSAHALVTIINDILDFSKV 573 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIAL 709 E+GK+ L P SL + ++ + A+EK + ++P ++ D ++Q+ + Sbjct: 574 EAGKLELEEAPFSLQAELEAMGDVLAVKAHEKGLEYACIMHPDVPDALIGDSIRLRQVLV 633 Query: 710 NILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 NI+ NA+ FT +G +I ++ + ++ ++DTG G+ ++E + F Q +S Sbjct: 634 NIVGNAVKFTDAGEVSLEISMAAMDDARCTLLFSIKDTGAGLPEDKIETVFEAFAQADSS 693 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + GTGLGL +++++V G+ + A+G Sbjct: 694 VTRKFGGTGLGLAISQSLVRLMGGEIIAENREARGA 729 >gi|78221238|ref|YP_382985.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens GS-15] gi|78192493|gb|ABB30260.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens GS-15] Length = 508 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 101/403 (25%), Positives = 177/403 (43%), Gaps = 65/403 (16%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY--------PVEDIL-- 493 +R++E E ++ +IL+ ++ + ++R+G+++S NR ++LFG PVE++L Sbjct: 132 QREVEEERRKMEAILQGMAEALVAVDRQGLVMSINRTAAELFGVDAAAVHARPVEELLSA 191 Query: 494 -----RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 R P V L P + Y + + L + E + S+ II Sbjct: 192 AIPADRLPCRVVLATGEPCLDVAYDLRLPGRIVPVLSSAAPLANAAGEMIGSVEII---- 247 Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 DIS A K E+E + DF++ +SH+++TP+TAIIG + Sbjct: 248 ----------RDIS-----------ALKALEQE---REDFVSMLSHDLKTPITAIIGSID 283 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++K R GP+ NP Y + S ++D+++ LLD+ + E+G+M L + Sbjct: 284 LVKEGRLGPV-NPEQSMYLDAAVESCAEMVDMIDTLLDVHRFEAGRMVTTLVEEELGPLL 342 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG----- 723 + + A + + S L D + ++ N+LSNA+ FT GG Sbjct: 343 QRTVGRFEPVARHSGLELTLSLPGAPVTFLVDRKQFGRLLGNLLSNALKFTTEGGIEVRA 402 Query: 724 ----------QIIISTTHTS------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 Q I + + +++ V DTG G+ L F Q N + Sbjct: 403 ELPENAAAAAQGITPGAYPTERLPREGRYLLVSVSDTGAGIPADSLVTIFDRFVQARNRK 462 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + GTGLGL + ++DA+ G + S P +G+ ++FPL Sbjct: 463 MGKSSGTGLGLAFCRKVMDAHHGFIWAESEPDRGSTFRMLFPL 505 >gi|84393022|ref|ZP_00991789.1| hypothetical protein V12B01_03918 [Vibrio splendidus 12B01] gi|84376376|gb|EAP93257.1| hypothetical protein V12B01_03918 [Vibrio splendidus 12B01] Length = 572 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 84/267 (31%), Positives = 133/267 (49%), Gaps = 13/267 (4%) Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 C +LT H ++ N+ ++K AE+ DF+A ++HE+RTPL ++G +E+I + Sbjct: 179 CSALT-HQLA-----INRNVESRKRAEESERATRDFVAMINHELRTPLNGLLGSAELISD 232 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + R E N + +SG + I+NDLLD SKI +G ++L + +L + + Sbjct: 233 TELS--SSQR--EIVNNLSQSGEFLRTIINDLLDFSKINAGMLDLIPKKFALHDLRNTIE 288 Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 S+ A EK+I S A+N+P DL + Q+ +N++ NAI FT G + + Sbjct: 289 SIFVNRAIEKQIEFNISVASNVPSHFQGDLERITQLFVNLIGNAIKFTEEG-HVNVDIEW 347 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 N+ + V DTGVG+ + +PF Q NS EGTGLGL + + +V G Sbjct: 348 DKNQ-FVFSVEDTGVGIAESAHKTLFEPFTQADNSSSRNYEGTGLGLAICRKLVALMNGV 406 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHPHD 818 + S GT I PL P + Sbjct: 407 IGVTSVVGSGTTFTISIPLQVVDVPAE 433 >gi|303241735|ref|ZP_07328232.1| integral membrane sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] gi|302590736|gb|EFL60487.1| integral membrane sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] Length = 503 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 79/254 (31%), Positives = 127/254 (50%), Gaps = 6/254 (2%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 FS ++ D E Q +H E + F+A VSHE+RTP+T+I GF E Sbjct: 240 FSKRLDISSED--EIGQLAESFNHMAVALENLEEMRRGFIANVSHELRTPMTSIHGFIEG 297 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 I + P R EY + + + + NDLLD++++ESG+M L F ++E + Sbjct: 298 ILDGTIPP---EREREYLSIVSDETKRLSRLTNDLLDLARMESGEMKLTFVTFDINELIR 354 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 I ++ K I I +F + AD S++++ LN+L NA+ F GGQIII Sbjct: 355 RCIIKLENQIVTKNIQIEANFHEEAAHVYADKDSIERVVLNLLHNAVKFVQDGGQIIIE- 413 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 T S +V++ V+D G G+ + E+ F + S+ GTGLGL + K +++ + Sbjct: 414 TEMSKGKVMVSVKDNGAGIDSEEIGLIWDRFYKSDKSRGKDKSGTGLGLAIVKNIINEHG 473 Query: 790 GKFYIFSTPAKGTL 803 + + S KGT+ Sbjct: 474 QEIRVESEIGKGTV 487 >gi|160899265|ref|YP_001564847.1| GAF sensor hybrid histidine kinase [Delftia acidovorans SPH-1] gi|160364849|gb|ABX36462.1| GAF sensor hybrid histidine kinase [Delftia acidovorans SPH-1] Length = 1177 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 129/233 (55%), Gaps = 3/233 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E S +KS+FLA +SHE+RTPL + + ++++ + + G L ++YA I +G+ +L Sbjct: 470 ELASQYKSEFLANMSHELRTPLNSTLILAKLLADNKPGNL-QADQVKYAQTIHAAGSDLL 528 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++ND+LD+SKIE+G++++ EP+++ A+ + ++ A EK + + + +P + Sbjct: 529 ALINDILDLSKIEAGQVSVLVEPMTIATALQALMEPLRPIAREKGLELTWTVDPGVPASM 588 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + Q+ N+LSNA+ FT G + + + + VRDTG+G+ + + Sbjct: 589 QTDPMRLAQVLKNLLSNALKFTAKGS-VGLQVSRVPGGMLAFAVRDTGIGIAEQQQQFIF 647 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F Q S + GTGLGL +++ + G + STP +G++ + P+ Sbjct: 648 DAFRQADGSTHRKFGGTGLGLSISRDLAGLLGGTLTVSSTPGQGSVFTLTVPV 700 >gi|262382637|ref|ZP_06075774.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|262295515|gb|EEY83446.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 882 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 133/257 (51%), Gaps = 23/257 (8%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D+++ KQ +N+L AK+ AE+ KS FLA +SHEIRTPL AI+GFS G L Sbjct: 502 EDVTKQKQAENELRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFS--------GLL 553 Query: 619 GNPRYI----EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 + EY N I+ + +L+L ++ND+LD++KIE+G + V +++ S+ Sbjct: 554 AVTENMEDKEEYINIINSNNDLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQS 613 Query: 675 VQLYANEKRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +L A + ++ F IP + D V Q+ N ++NAI FT + G I+ H Sbjct: 614 SRLKAQDG---VQVCFVEKIPNCILRTDRNRVSQVITNFINNAIKFT-TQGSILFGYRH- 668 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++E+ V+DTG G+ ++ + F ++ + Q GTGLGL + + ++ G Sbjct: 669 RDDELYFYVKDTGCGIAKDKIGQVFTRFVKLNSFVQ----GTGLGLSICQMIIKRLGGDI 724 Query: 793 YIFSTPAKGTLIEIIFP 809 + S KG+ P Sbjct: 725 GVESEQGKGSTFWFTLP 741 >gi|16329398|ref|NP_440126.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] gi|1651879|dbj|BAA16806.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] Length = 834 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 89/266 (33%), Positives = 139/266 (52%), Gaps = 45/266 (16%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q++ L AK+IAE E+ KS F+A +SHE+R+PL AIIGFS+++ + P+ +Y E Sbjct: 346 QKQVDLVRAKEIAESEAKAKSTFVANMSHELRSPLNAIIGFSQLMLRTKNLPM--EQY-E 402 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLH------------FEPVSLDEAVSEAIS 673 A I RSG +L+++N++LD SKIE+GK +L+ E + +A +E I Sbjct: 403 NAGIIQRSGEYLLNLINNILDFSKIEAGKTHLNRHNFDLYLLLDDLEDMLHLKAANEGIE 462 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 L I IR +++PR + D ++QI LN+LSNAI FT G ++ S Sbjct: 463 L---------IFIRD---HDLPRYVYGDEIKLRQILLNLLSNAIKFTTEGEVVLTSNFRN 510 Query: 733 S-NEEVI---------------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 + +EVI ++DTG G++ EL + F Q + + + EGTGL Sbjct: 511 AEQQEVINPETSTEPKNKYWLDFTIKDTGKGISEVELSHLFEAFSQTESGRNAQ-EGTGL 569 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGT 802 GL + + + G + S +GT Sbjct: 570 GLAITRQFIKLMGGDINVSSVVDQGT 595 >gi|304320167|ref|YP_003853810.1| Signal transduction histidine kinase [Parvularcula bermudensis HTCC2503] gi|303299070|gb|ADM08669.1| Signal transduction histidine kinase [Parvularcula bermudensis HTCC2503] Length = 651 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 79/258 (30%), Positives = 140/258 (54%), Gaps = 21/258 (8%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++ ++ + + A S K +LA +SHE+RTPL I+G + ++ + PL Sbjct: 94 DVTRDRKNYAVMRELARTARAVSEEKMRYLATMSHEMRTPLNGILGMNGLLLDS---PLD 150 Query: 620 -NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N R YA + ++G +L ++ND+LD SKI++G ++L +P S + E ++ + Sbjct: 151 VNQRA--YAEAVQQAGTALLTLINDVLDYSKIQAGHLDLEEKPFSPGALLKEVAEILAIR 208 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI--IISTTHTSNE 735 A+EK I I +IP ++ D ++Q+ +N+ +N + FT GG I+ T ++++ Sbjct: 209 ADEKGIDIALLLHPDIPEELVGDPARLRQVLVNLATNGVKFTTEGGVSLEILPGTGSTDD 268 Query: 736 EVI------LRVRDTGVGMTNYELEKAMKPF--GQIPNSQQIRGEGTGLGLPLAKAMVDA 787 ++I RVRDTG G+ L++ + F G P+++ EGTGLGL +A+ +V+A Sbjct: 269 DLIDHRRYSFRVRDTGKGIAADNLDRLFEEFDQGSDPSAE----EGTGLGLTIARQLVNA 324 Query: 788 NMGKFYIFSTPAKGTLIE 805 G + S KG+ E Sbjct: 325 MGGNIDVTSALGKGSTFE 342 >gi|312131206|ref|YP_003998546.1| histidine kinase [Leadbetterella byssophila DSM 17132] gi|311907752|gb|ADQ18193.1| histidine kinase [Leadbetterella byssophila DSM 17132] Length = 1314 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 133/252 (52%), Gaps = 12/252 (4%) Query: 566 QEKNKLSHAKKIAEKE-SSHKSDFLARVSHEIRTPLTAIIG-FSEVIKNQRFGPLGNPRY 623 Q K L +K E+E S K +F VSHE+RTPL+ I+ +++K G + + Sbjct: 793 QNKVALEQMEKQKERELSEMKLNFFTNVSHELRTPLSLILHPADDLVKAVEPGSEAHGK- 851 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 A + + + +L +VN L+D+ K+ESG M +H E V + + E + ++ A EK Sbjct: 852 ---AVLVHKQAHKLLTLVNQLMDLRKVESGNMPIHLEKVDVISFIREIFLIFKIKAEEKN 908 Query: 684 ILIRTSFANNIPRILADLRSVKQ--IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 I + F ++ ++AD K I N+LSNA +T SGGQI +S T N+ + L Sbjct: 909 I--QYEFLSDHTELVADFDIAKLEIILTNLLSNAFKYTQSGGQIQLSVQKTENQSLCLTF 966 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +D+G+G+ +++ +PF Q N +I GTG+GL L K +V G+ + S +G Sbjct: 967 KDSGIGIHPQDIKNIFEPFYQSVNRSKI--PGTGIGLSLVKELVQMLGGEILVESILGEG 1024 Query: 802 TLIEIIFPLYDT 813 + + PL ++ Sbjct: 1025 STFAVKLPLQNS 1036 >gi|254512446|ref|ZP_05124513.1| sensor histidine kinase/response regulator [Rhodobacteraceae bacterium KLH11] gi|221536157|gb|EEE39145.1| sensor histidine kinase/response regulator [Rhodobacteraceae bacterium KLH11] Length = 748 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 102/394 (25%), Positives = 184/394 (46%), Gaps = 55/394 (13%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 D + K+E+ +L ++ DG A + ++ N A +F Sbjct: 77 DLTMAHAKIEVAERRLWHSIQTIPDGFAFFDGNNTLIGANAAYLSVFDG----------- 125 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLS----------------- 540 LE+ P + L EIL T E I +G+ + E L+ Sbjct: 126 --LEEVAPGITYPRLLEIL------TCEGIVDIGADRTEDWLARMLDRWAQPHPEPMVIQ 177 Query: 541 ------LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 +R+I ++ SL + +I+ + + +L+ A++ AE + KS FLA +SH Sbjct: 178 LWNGQYIRLIDQRGHGGDVLSLAL-NITATVRHEAELNAARERAEAANRAKSAFLANMSH 236 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 EIRTP+ I+G +E++ PL + + Y + I SG +L I+ND+LD SKIE+ K Sbjct: 237 EIRTPMNGIVGMTELLTET---PLNEEQRL-YISTIRNSGEALLVIINDVLDYSKIEADK 292 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILS 713 + LH E L+ + E L+Q +K + + + +P + + D ++QI N++ Sbjct: 293 LTLHPEQFDLERCILEVAMLLQPSVRDKGLTLLVDYDLFLPTLFVGDPGRIRQILTNLVG 352 Query: 714 NAIHFTPSGGQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 NA+ FT + G +++ T + ++ + + DTG+G+ ++ F QI ++Q Sbjct: 353 NAVKFT-AQGHVLVRVTGVPDASAQSCDIHVAIEDTGIGIEADKIAHIFGEFNQIEDAQN 411 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + EGTGLGL + K ++ G ++ S +G+ Sbjct: 412 RQFEGTGLGLAITKRLITMMGGTVWVESDVGRGS 445 >gi|332532038|ref|ZP_08407922.1| histidine kinase [Pseudoalteromonas haloplanktis ANT/505] gi|332038665|gb|EGI75108.1| histidine kinase [Pseudoalteromonas haloplanktis ANT/505] Length = 655 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 75/260 (28%), Positives = 134/260 (51%), Gaps = 15/260 (5%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y+L D+ + E+ K AE E+ K FLA +SHE+RTPL++I+G++E++ Sbjct: 123 YALARKDVEGERVERLK-------AEAENRSKDRFLAHLSHELRTPLSSILGYTELLMQS 175 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 F I R+G +L ++ND+LD+SKI + K+ L V+LD +++ + Sbjct: 176 DFSQQAENEL----GVIYRNGKHLLSLLNDVLDLSKIAADKLELTLSEVNLDSMLADVYT 231 Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH- 731 L+++ +K + +R +P + D V+QI +N+++NA+ FT G ++ + T Sbjct: 232 LMRVSVLDKGLTLRFESQQPLPLVARLDATRVRQILINLINNAVKFTDKGEIVVNAWTQW 291 Query: 732 -TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 E + ++D+G+G+ + E KPF QI + + G GLGL + ++ G Sbjct: 292 VDDREMLFFSIKDSGMGIAPEKQELIFKPFEQIADVESRSVGGAGLGLAICAELLARMHG 351 Query: 791 KFYIFSTPAKGTLIEI-IFP 809 + S KG I ++P Sbjct: 352 NISLHSEIGKGATFTISVYP 371 >gi|301057605|ref|ZP_07198685.1| PAS domain S-box protein [delta proteobacterium NaphS2] gi|300448329|gb|EFK12014.1| PAS domain S-box protein [delta proteobacterium NaphS2] Length = 828 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 106/364 (29%), Positives = 177/364 (48%), Gaps = 37/364 (10%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 IL S+G+ + +G I N + L G P + + + V + + P + + Sbjct: 154 ILGKMSEGVFEVTADGRITYVNSSALLLTGLPEKSV----YGVHIAELFPHRDDGGRMRV 209 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF---SSCYSLTMHDISEWKQEKNKLSH 573 +LD R +T+G L ++ + LP +S ++ + DI+E K+ + L Sbjct: 210 -ALD-RLGEVPLTMGEDSPLVLNHRQVSVSILPLNDETSSAAVILTDITERKRVEQALIE 267 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI------KNQRFGPLGNPRYIEYA 627 AK+ AE S KS FLA +SHEIRTP+ A+IGF++++ +QR +YA Sbjct: 268 AKERAETASQTKSHFLANMSHEIRTPMNAVIGFTDMLLDTDLTDDQR----------DYA 317 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMN---LHFEPVSLDEAVSEAISLVQLYANEKRI 684 +SG +L ++ND+LD SKIE+G++N + F+P L V E I + K + Sbjct: 318 MTAKKSGESLLSLLNDILDFSKIEAGELNFEKIDFDPELLSYDVCEVI---RPRVESKPV 374 Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--- 740 I ++P + D +Q+ +N++SNA FT S G+I +S + E ++ Sbjct: 375 EILCHVGADVPSFVKGDPGRYRQVLVNLMSNATKFTES-GEIELSLDVEAEEADRIKFHA 433 Query: 741 -VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 VRDT +G+ +L PF Q S + GTGLGL + + + G ++ S Sbjct: 434 TVRDTAMGIPEDKLSLIFDPFQQADGSMTRKYGGTGLGLTVCRQLSRFMDGDVWVESEVN 493 Query: 800 KGTL 803 KG++ Sbjct: 494 KGSI 497 >gi|269962916|ref|ZP_06177255.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832361|gb|EEZ86481.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 566 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 121/238 (50%), Gaps = 9/238 (3%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 +K AE +F+A ++HE+RTPL ++G +E++ G +Y + +SG Sbjct: 195 RKRAEASEKATKEFVAMINHELRTPLNGVLGSAELLSKTELGD----EQQQYLGNLIQSG 250 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L+ I+NDLLD SK+ +G M + + + + + + A EKRI I Sbjct: 251 DLLRVIINDLLDFSKMNAGMMEIIDKVFAWKDLENALTGVFAAKAAEKRIHFSIDKKLGI 310 Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 P L D + QI +N++ NAI FT GG ++ + V DTG+G+ +E Sbjct: 311 PEFLVGDFERITQILVNLIGNAIKFTHLGG--VVLRVEWVDGYAHFEVEDTGIGIP-FEA 367 Query: 754 EKAM-KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +KA+ PF Q S + EG+GLGL + K +VD G+ S P KGT +++ PL Sbjct: 368 QKALFDPFVQADRSTKRSFEGSGLGLAICKNLVDLMDGEISFVSEPRKGTTFKVVLPL 425 >gi|239907556|ref|YP_002954297.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797422|dbj|BAH76411.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1011 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 128/247 (51%), Gaps = 10/247 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + E + + L AK+ AE S KS FLA SHEIRTP+ IIG ++ R + Sbjct: 351 LDEQSRMNDVLQKAKEAAESGSRAKSAFLANTSHEIRTPMNGIIGMCNLLLGTRL----S 406 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + +E+ + S N ++ ++ND+LD SKI++GK +L L ++ + + + Sbjct: 407 DKQLEFVRTVHYSANTLMAVINDILDFSKIDAGKFSLEIIEFDLRRVLNMTLRPLTIACQ 466 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI- 738 +K + + + ++P L D ++Q+ N++ NAI FT G ++ + S + + Sbjct: 467 QKGVELILVVSPHMPVFLRGDPARLQQVINNLVGNAIKFTERG-EVAVCVDFLSESDGVA 525 Query: 739 ---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V+DTG+GM+ + E KPF Q+ +S R GTGLGL ++ +++ G+ + Sbjct: 526 YIRFSVKDTGIGMSPQQQEIIFKPFEQVDSSLTRRFGGTGLGLAISSHLIELMGGQLSVE 585 Query: 796 STPAKGT 802 S KG+ Sbjct: 586 SILGKGS 592 >gi|300936770|ref|ZP_07151663.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 21-1] gi|300458100|gb|EFK21593.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 21-1] Length = 593 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 188/398 (47%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 214 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 273 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 274 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 326 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 327 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 381 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q P+ + EY + + + + + ++ LL+ S+ Sbjct: 382 AHEVRNPLTAIRGYVQILRQQTSDPI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 437 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 438 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL 493 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 494 INAVQAISARGKIRIRTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFF------TTKAS 547 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 548 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 585 >gi|257092730|ref|YP_003166371.1| integral membrane sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045254|gb|ACV34442.1| integral membrane sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 584 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 117/229 (51%), Gaps = 6/229 (2%) Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHEIRTP+ ++G +E++ PL + + RSG +LD++ND+LD Sbjct: 219 FLANMSHEIRTPMNGVLGIAELLLAT---PLAEQQRSRLQT-LYRSGQSLLDVINDILDF 274 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQ 706 SKIE+GK+ L L + + + A K + + + ++P L AD ++Q Sbjct: 275 SKIEAGKLELRESDFDLRAMLRDVLDAFAATAAAKGLALSSRLGADVPAGLHADQARLRQ 334 Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 + N++ NAI FT +G +++++ ++ + V+DTGVG+ E + F Q S Sbjct: 335 VLTNLIGNAIKFTEAG-RVVVTVERLDDQHLRFAVQDTGVGLAAEERARVFDAFAQADVS 393 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 R GTGLGL +++ +V G+ + STP G+ P H Sbjct: 394 HTRRHGGTGLGLAISRQIVTLMAGEIGVDSTPGAGSTFWFKLPFQPAQH 442 >gi|255012665|ref|ZP_05284791.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_7] Length = 882 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 133/257 (51%), Gaps = 23/257 (8%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D+++ KQ +N+L AK+ AE+ KS FLA +SHEIRTPL AI+GFS G L Sbjct: 502 EDVTKQKQAENELRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFS--------GLL 553 Query: 619 GNPRYI----EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 + EY N I+ + +L+L ++ND+LD++KIE+G + V +++ S+ Sbjct: 554 AVTENMEDKEEYINIINSNNDLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQS 613 Query: 675 VQLYANEKRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +L A + ++ F IP + D V Q+ N ++NAI FT + G I+ H Sbjct: 614 SRLKAQDG---VQVCFVEKIPNCILRTDRNRVSQVITNFINNAIKFT-TQGSILFGYRH- 668 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++E+ V+DTG G+ ++ + F ++ + Q GTGLGL + + ++ G Sbjct: 669 RDDELYFYVKDTGCGIAKDKIGQVFTRFVKLNSFVQ----GTGLGLSICQMIIKRLGGDI 724 Query: 793 YIFSTPAKGTLIEIIFP 809 + S KG+ P Sbjct: 725 GVESEQGKGSTFWFTLP 741 >gi|254787521|ref|YP_003074950.1| histidine kinase [Teredinibacter turnerae T7901] gi|237685843|gb|ACR13107.1| histidine kinase [Teredinibacter turnerae T7901] Length = 663 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 121/233 (51%), Gaps = 9/233 (3%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S K++FL R+SHE+RTPLTAI+G+++++ + EY + +G +L ++ Sbjct: 146 SRAKTEFLTRLSHELRTPLTAILGYTDLLSTRSKDEADQ----EYLQIVSHNGKHLLALL 201 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILAD 700 ND+LD+SKIE+GK+ + + S+ L + A +K + + P D Sbjct: 202 NDVLDLSKIEAGKLEIEKSFFEIQPFFSDIYLLFNMKAKDKGLDFEVRLTGELRPVFYGD 261 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--EEVILR--VRDTGVGMTNYELEKA 756 ++QI LN++ NAI FT G I+ ++ N EE LR V DTG G+++ +L+ Sbjct: 262 ATRLRQIVLNLIGNAIKFTSQGSVIVEVSSIVENVGEEQQLRICVHDTGPGISSEQLDDI 321 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 PF Q + + GTGLGL +++ +V G+ + ST G+ P Sbjct: 322 FLPFNQAASKSEASENGTGLGLTISRELVSRMGGQLTVESTLGVGSCFCCTLP 374 >gi|192358871|ref|YP_001980777.1| response regulator receiver domain-containing protein [Cellvibrio japonicus Ueda107] gi|190685036|gb|ACE82714.1| Response regulator receiver domain protein [Cellvibrio japonicus Ueda107] Length = 659 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 129/246 (52%), Gaps = 12/246 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS + + + +L HAK A+ S KS+FLAR+SHEIRTP+ AIIG ++++ PL Sbjct: 110 DISRFIKTQEELLHAKTQADMASKTKSEFLARISHEIRTPMNAIIGIGYLMQDT---PLD 166 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + Y I+ + + +L I+N LLD SKIE+G++ L L++ + L ++ A Sbjct: 167 EQQQ-SYLTSINSAADSLLQIINQLLDFSKIEAGRVILEHAHFDLEQVFEKITRLFEISA 225 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + + I A ++PR L D + QI +++SNA ++ Q+++ E+++ Sbjct: 226 LHRNVSIAYDIAPDVPRFLRGDASRLSQILNHLISNAFQYS-RRDQVVVRVKRLPGEQLV 284 Query: 739 LR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 L V DTG+GMT +L + + SQ+ G GLG + ++ G I S Sbjct: 285 LEFCVEDTGLGMTAEKLSHVKERL--LKGSQETGGSTCGLG--ICNHLIQLMQGDMRIES 340 Query: 797 TPAKGT 802 P +G Sbjct: 341 APNRGC 346 >gi|295425530|ref|ZP_06818221.1| sensor histidine kinase VicK [Lactobacillus amylolyticus DSM 11664] gi|295064783|gb|EFG55700.1| sensor histidine kinase VicK [Lactobacillus amylolyticus DSM 11664] Length = 618 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 97/379 (25%), Positives = 176/379 (46%), Gaps = 36/379 (9%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E +L S+L +DG+ +R G + N+ +D++ +P L N + Sbjct: 262 ERRRLDSVLSHMTDGVLAADRHGNVNVVNQMALSFLNVKEKDVIGEPINKVLGLNESA-- 319 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEWKQE 567 + L + ++ + + G T++E +L S +I + F S +HD++E Q+ Sbjct: 320 -----QDLIANQKEIVVTVNSG-TRDEMILHASFSLIKRVTGFVSGSVCVLHDVTE--QQ 371 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGNPRYIEY 626 KN E+S K F++ VSHE+RTPLT++ + E + + P P++++ Sbjct: 372 KN-----------ENSQKQ-FVSNVSHELRTPLTSLRAYIEALNEGAWKDPTIAPQFLQV 419 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL- 685 ++ ++NDLL +S+++ G + E V+L++ VS ++ + + Sbjct: 420 TQ---EETERMIRMINDLLSLSRMDRGVSKMDLEWVNLNDFVSHILNRFDMIVKTDKNTD 476 Query: 686 ------IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 IR N + D + Q+ NI++NAI ++P GG I + N VIL Sbjct: 477 KKKKYTIRRELGNQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLVQNQNH-VIL 535 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 + D G+G+ +L K F ++ ++ GTGLGL +AK +V+A+ GK + S+ Sbjct: 536 SISDQGLGIPRKDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGKIWADSSEG 595 Query: 800 KGTLIEIIFPLYDTSHPHD 818 G+ I P S D Sbjct: 596 NGSTFYISLPYESMSEEDD 614 >gi|302418052|ref|XP_003006857.1| peroxide stress-activated histidine kinase mak1 [Verticillium albo-atrum VaMs.102] gi|261354459|gb|EEY16887.1| peroxide stress-activated histidine kinase mak1 [Verticillium albo-atrum VaMs.102] Length = 1773 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 83/243 (34%), Positives = 122/243 (50%), Gaps = 15/243 (6%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +KL AK ES KS FL+ +SHEIRTPL I G +++ N +Y N Sbjct: 1102 HKLLEAKLKEAMES--KSRFLSNMSHEIRTPLIGISGMVSFLQDSVL----NEEQRDYTN 1155 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I S N +L I+ND+LD+SK+++G M L +E + + LV A KR+ + Sbjct: 1156 TIQTSANSLLMIINDILDLSKVDAGMMKLKYEWFHTRALIEDVNELVSTMAIAKRLELNY 1215 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN------EEVILR- 740 N+P I D ++Q+ LN++ NAI FT G +TS E++L Sbjct: 1216 VVEQNVPTWIKGDKVRIRQVLLNVIGNAIKFTSEGEVFSRCRVYTSETAMLTPNEIMLEF 1275 Query: 741 -VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 + DTG G T E E KPF QI S + G+GLGL +++ +V+ + G + P Sbjct: 1276 AIIDTGRGFTEEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGVMEGTAVPG 1335 Query: 800 KGT 802 KG+ Sbjct: 1336 KGS 1338 >gi|162451695|ref|YP_001614062.1| sensory box histidine kinase PhoR [Sorangium cellulosum 'So ce 56'] gi|161162277|emb|CAN93582.1| sensory box histidine kinase similar to PhoR [Sorangium cellulosum 'So ce 56'] Length = 597 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 98/382 (25%), Positives = 179/382 (46%), Gaps = 40/382 (10%) Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 +++R++ E + ++LE+ +G+ + + +G I N A+S+L G + + R P V Sbjct: 236 VSRRELGGEGERFGAVLESMREGVLVTDEKGDITLVNPALSQLLGIRRDPVGRPPLEVLR 295 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-------EEKLLSLRIIIKKLPFSSCY 554 + H L E ++L +I + ++L + LP S Sbjct: 296 SSSL-----HELLEEVALARAAATREIEIAPAAPGVAGPPGRRILLVNAAPLALPAQSRG 350 Query: 555 SLTM----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + + D++E ++ + + +F+A SHE+RTP+ +I SE + Sbjct: 351 AAGVVAVFFDVTELRRIEGL--------------QRNFIANASHELRTPVASIRASSETL 396 Query: 611 KNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 G L +P ++ I+R+ + +V+DLLD+S+IE G+ L P +LD +V Sbjct: 397 LG---GALDDPEAARDFVEVIERNATRLHRLVDDLLDLSRIEGGERPL--SPGTLDLSVQ 451 Query: 670 E--AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 A++L++ A E+ ++ A + AD R++ QI N++ NAIH TP+G +++ Sbjct: 452 AEAAVALLRGRAMERGTDVKIDVAPGT-LVAADPRALDQILTNLVDNAIHHTPNGSHVVV 510 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 +N V+L V D G G+ + F ++ + GTGLGL +AK +V+A Sbjct: 511 RA-RAANGRVVLEVEDDGPGIPAVHQARVFDRFYRVDPGRSRASGGTGLGLSIAKHLVEA 569 Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809 G + + A G L I P Sbjct: 570 MSGDITVTTGAAGGALFRITLP 591 >gi|150008612|ref|YP_001303355.1| putative two-component regulator sensor kinase [Parabacteroides distasonis ATCC 8503] gi|149937036|gb|ABR43733.1| putative two-component regulator sensor kinase [Parabacteroides distasonis ATCC 8503] Length = 638 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 131/245 (53%), Gaps = 10/245 (4%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 EK L+ A + A + KS FLA +SHEIRTPL AIIGFS +I L +Y Sbjct: 403 EKESLAEALEKANESDRMKSVFLANMSHEIRTPLNAIIGFSSLIAEL---DLTAEEKEQY 459 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 AN I + L+L +VND+LD+++IESG + H E +L + V + + L + I Sbjct: 460 ANIITTNNELLLKLVNDILDLARIESGGIVFHKESCNLTDLV-KTLYKQHLSDVPEGIEF 518 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTG 745 + + + D + Q NIL NAI FT S G I I +++N ++V L V+DTG Sbjct: 519 KEKCPDTPICLYTDKERLYQALENILKNAIKFT-SAGFIEIGYEYSTNAQDVRLYVQDTG 577 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G++ + E + F ++ + Q GTGLGL + +A+V G+ + S KG I Sbjct: 578 IGISPEDQEAIFERFKKLDDFVQ----GTGLGLSICQAIVKQLNGRILLKSEKNKGCRIS 633 Query: 806 IIFPL 810 ++F L Sbjct: 634 LVFEL 638 >gi|46579036|ref|YP_009844.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46448449|gb|AAS95103.1| sensor histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|311232883|gb|ADP85737.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1] Length = 832 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 126/237 (53%), Gaps = 9/237 (3%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 +S + +AE + KS FLA +SH++RTPLT IIG +++++ P YI A Sbjct: 236 ISSRQAVAEAANRMKSAFLANMSHDMRTPLTGIIGMADLLEAPGCPPERRSAYI--AQLK 293 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 S NL L+IVND+ D S +ESG++ L +L AV E + L + +K + + Sbjct: 294 GASANL-LEIVNDITDYSCLESGRLRLLPRHFALRNAVDECLGLFRFTCEQKGLTLTADI 352 Query: 691 ANNIPRILA--DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTG 745 +P L D R ++Q N++SNA+ FT G + + S E+V+LR V+DTG Sbjct: 353 PPGLPDSLTGDDFR-LRQALGNLVSNAVKFTRRGTITVAVREEERSAEDVMLRFTVQDTG 411 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 VG+ +E + + F Q + ++R GTGLGL + + + G + STP G+ Sbjct: 412 VGIPLHEQDAIFESFVQGGAAHELRMGGTGLGLAITRDIAAMCGGTAGVHSTPGTGS 468 >gi|332669345|ref|YP_004452353.1| multi-sensor signal transduction histidine kinase [Cellulomonas fimi ATCC 484] gi|332338383|gb|AEE44966.1| multi-sensor signal transduction histidine kinase [Cellulomonas fimi ATCC 484] Length = 589 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 133/244 (54%), Gaps = 13/244 (5%) Query: 578 AEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE----YANYIDR 632 A++E++ K +F++ VSHE+RTPLT+++G+ E++ + G E Y I+R Sbjct: 353 ADREAARLKDEFVSLVSHELRTPLTSVLGYLELLLD------GTDELTEEQRSYLTVIER 406 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 + L +V DLL +++++G + P+ L + V + + + A + + + TS A Sbjct: 407 NARRQLRLVGDLLLTAQVDAGTFAISPRPIDLADVVRGSATSLGPVAEQAGVALVTSVAP 466 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 ++AD + Q+ N++SNA+ FTPSGG++ + T + + VRDTG+G+ E Sbjct: 467 T--PVVADPGRLAQVVDNLVSNAVKFTPSGGEVHLEVAPTPDGGAGVLVRDTGIGIAPDE 524 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 L++ F + ++ + G GLGL +A+A+VDA+ G+ + ST +GT + P Sbjct: 525 LQRLTTRFFRATSATRRAIPGVGLGLAIARAVVDAHGGRLDVESTLGEGTTFVVTLPAAP 584 Query: 813 TSHP 816 P Sbjct: 585 PDRP 588 >gi|301308093|ref|ZP_07214047.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|300833563|gb|EFK64179.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 882 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 133/257 (51%), Gaps = 23/257 (8%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D+++ KQ +N+L AK+ AE+ KS FLA +SHEIRTPL AI+GFS G L Sbjct: 502 EDVTKQKQAENELRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFS--------GLL 553 Query: 619 GNPRYI----EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 + EY N I+ + +L+L ++ND+LD++KIE+G + V +++ S+ Sbjct: 554 AVTENMEDKEEYINIINSNNDLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQS 613 Query: 675 VQLYANEKRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +L A + ++ F IP + D V Q+ N ++NAI FT + G I+ H Sbjct: 614 SRLKAQDG---VQVCFVEKIPNCILRTDRNRVSQVITNFINNAIKFT-TQGSILFGYRH- 668 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++E+ V+DTG G+ ++ + F ++ + Q GTGLGL + + ++ G Sbjct: 669 RDDELYFYVKDTGCGIAKDKIGQVFTRFVKLNSFVQ----GTGLGLSICQMIIKRLGGDI 724 Query: 793 YIFSTPAKGTLIEIIFP 809 + S KG+ P Sbjct: 725 GVESEQGKGSTFWFTLP 741 >gi|256425249|ref|YP_003125902.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] gi|256040157|gb|ACU63701.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] Length = 673 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/281 (28%), Positives = 143/281 (50%), Gaps = 16/281 (5%) Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 +I K+ S + + D+S K +++L A++ AE+ + +FLA +SHEIRTPL Sbjct: 124 LIEKRRFMGSVWQIV--DVSRHKMPRSQLDLARRQAEEARGAQKEFLASMSHEIRTPLNV 181 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 I+G + +++ +P+ +Y N + S +++ +++D+LD+SKIE+G++ ++ Sbjct: 182 IVGMTHLLEETNL----DPKQRDYINILKHSSGILMGLISDILDLSKIEAGELQVNQREF 237 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721 +L E V +L ++ + I S + ++ D + QI +N+L NA FT Sbjct: 238 NLTELVQSLRHTFELKIGQRPVSISASIDPQLKTWLVGDDMLLNQILMNLLGNAEKFTRE 297 Query: 722 GGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE--GTG 775 G+I I+ S +E V +V DTG+G+ +LE + + Q Q+IR GTG Sbjct: 298 -GEIAINVQLDSWQEDKCWVTFQVCDTGIGIQKDKLELIFQNYKQ--AEQEIRENYGGTG 354 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 LGL ++K +V+ G + T P DT P Sbjct: 355 LGLAISKQLVELQGGSIVVEEADGFSTCFSFTLPFIDTRKP 395 >gi|307554286|gb|ADN47061.1| sensor protein AtoS for response regulator AtoC [Escherichia coli ABU 83972] Length = 608 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 188/398 (47%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 229 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 288 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 289 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 341 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 342 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 396 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q P+ + EY + + + + + ++ LL+ S+ Sbjct: 397 AHEVRNPLTAIRGYVQILRQQTRDPI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 452 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 453 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL 508 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 509 INAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLSLQKKIFDPFF------TTKAS 562 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 563 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 600 >gi|323699591|ref|ZP_08111503.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio sp. ND132] gi|323459523|gb|EGB15388.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio desulfuricans ND132] Length = 434 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 75/280 (26%), Positives = 135/280 (48%), Gaps = 27/280 (9%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAE-----------KESSHKSDFLARVSHEIRTPLTAII 604 + DISE K+ + L + E + + KS+FL+ VSHE+RTPLTA++ Sbjct: 153 IVARDISERKRNERALKRSHDQLELRVRERTRELDRANRAKSEFLSTVSHELRTPLTAVL 212 Query: 605 GFSEVIKNQRFGP-------LGNPRYIEYANYIDRS-------GNLVLDIVNDLLDISKI 650 GF++V + L +P + + R+ G + ++ND+LD++K+ Sbjct: 213 GFAKVTSRKLVNSIFPAVERLADPNLRKDMEVVRRNLEIIAGEGQRLTLLINDVLDLAKM 272 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710 E+ ++ PVS + + +++ + + + +R ++P + D + Q+ +N Sbjct: 273 EAHRVEYVMAPVSPEAFIRKSVEVTSALFEDTDLTLRLDLEPDLPLVNGDADRLMQVMVN 332 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 ++SNA+ FTP G +I H + V + V DTGVG+ L+ + F Q+ R Sbjct: 333 LISNAVKFTPQG--VITCAAHVVDGTVRVGVTDTGVGIRPELLQAIFEEFTQVGEHLSDR 390 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL + K +V+ + G + S P G+ P+ Sbjct: 391 PAGTGLGLTICKHIVEGHGGHIWAESRPGHGSTFLFTLPV 430 >gi|289674477|ref|ZP_06495367.1| PAS [Pseudomonas syringae pv. syringae FF5] Length = 595 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 93/375 (24%), Positives = 165/375 (44%), Gaps = 55/375 (14%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L ++L++ DG+ +I+R+G + N + G+ S + H Sbjct: 259 RLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGW-----------------DESRLGHS 301 Query: 513 LTEILSL-DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-------------- 557 L E L +L + L + G T E L I I YS+T Sbjct: 302 LGEALGRPELDEQLHLVLRGGTLERAPEDLAIEIDGESRLLTYSMTPVSHTKGHILGAVM 361 Query: 558 -MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI-IGFSEVIKNQRF 615 +HD++E + + +S+F+ R SHE+RTP+T + + F + + F Sbjct: 362 VLHDVTEQRAFERV--------------RSEFVLRASHELRTPVTGMHMAFGLLQERLHF 407 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P R + N + ++ ++NDLL+ S+ ++G L P S++ + EA + Sbjct: 408 AP--ESREADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLQEAKARF 465 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A E+ I++ +PR+ AD ++++ N+L NA+ TP G +I E Sbjct: 466 EDQAQEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTPPNG-LIRLQARRHGE 524 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 I+ V D G G+ + + +PF Q+ + G GLGL L K +V + G+ ++ Sbjct: 525 RAIISVEDNGEGIAYGQQGRIFEPFVQVGRKK----GGAGLGLALCKEIVQLHGGRMGVY 580 Query: 796 STPAKGTLIEIIFPL 810 S P +GT + PL Sbjct: 581 SRPGQGTQFYMALPL 595 >gi|288941216|ref|YP_003443456.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288896588|gb|ADC62424.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1169 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 134/252 (53%), Gaps = 15/252 (5%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A++ A + + +S+FLA +SHEIRTP+ A++G + +++ Q P + A Sbjct: 414 ELRAAREQALRLAQARSEFLANMSHEIRTPMNAVLGLAYLLERQENLP---EEACDLARK 470 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG +L I+ND+LD+SKIESGK+ + L + + +++ A K + + Sbjct: 471 IYHSGQSLLGIINDILDVSKIESGKILIEQTRFQLSQVLDNLATIMTTAARGKDL----A 526 Query: 690 FANNIPR-----ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--V 741 A PR +L D + QI +N+ +NAI FT SG ++ I+ +S +++R V Sbjct: 527 LAIVPPRDCDWPLLGDPLRLGQILINLTNNAIKFTDSGVVEVRITPVESSASNLVMRFTV 586 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RDTG+G+ + +PF Q S R G+GLGL +++ +V+ G+ + S P G Sbjct: 587 RDTGIGIDAETQARLFQPFMQADASTTRRFGGSGLGLMISRQLVELMGGRLGVESAPGVG 646 Query: 802 TLIEIIFPLYDT 813 + PL T Sbjct: 647 STFWFEVPLGRT 658 >gi|260439232|ref|ZP_05793048.1| sensor histidine kinase [Butyrivibrio crossotus DSM 2876] gi|292808247|gb|EFF67452.1| sensor histidine kinase [Butyrivibrio crossotus DSM 2876] Length = 440 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 127/229 (55%), Gaps = 7/229 (3%) Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 K + + +F A VSHE++TPLTAI G+SE+IKN G G+ +AN I + N +L Sbjct: 218 KNAIMRQEFTANVSHELKTPLTAISGYSELIKN---GMAGSEDIGRFANEIYTNANRLLT 274 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699 ++ND++++S+++ G L +E V + E +S++ +A E ++ + I R Sbjct: 275 LINDIINLSELDRGAP-LEYEDVDISEIAGNCVSMLDFHAKENQVTLHFDGEKTIVR--G 331 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759 + ++++ N+ NAI + +GG++ ++ +T E IL VRD G+G++ ++ + Sbjct: 332 NKNKLEEVVYNLCDNAIRYNKAGGEVWVTVKNTP-EGKILSVRDNGIGISKENQKRIFER 390 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 F ++ S+ + GTGLGL + K +++ + + S GT I +I Sbjct: 391 FYRVDKSRSKKTGGTGLGLAIVKHIIEQHNFNIEVISDENTGTTINVIM 439 >gi|1237202|emb|CAA65612.1| histidine kinase [Dictyostelium discoideum] Length = 1670 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 99/340 (29%), Positives = 170/340 (50%), Gaps = 27/340 (7%) Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP----SVMNHYLTEILSL 519 G+ +GIIL N + + GY D+ L TP + L E+ + Sbjct: 928 GVMFSTFKGIILDANDMLLQTIGYTRGDLENGKIDWMLL--TPPEHFEISARALQELKAK 985 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISEWKQEKNKLSHAKKIA 578 Q +EK + K K + + I + S+ +T + D+S ++Q A+ A Sbjct: 986 RWCQPIEKAYIH--KSGKRVPVLITSAMIDGSTEQCITFVFDLSRYRQ-------AEMAA 1036 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 + + K+ F+ +SHE+RTP I+G S+++ + + L N + + + I RS + ++ Sbjct: 1037 IEATRLKTQFITNISHELRTPCHGIVGMSQLLLDSQ---LTNTQR-DNIDSIKRSTDSLI 1092 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-- 696 ++ND+LD SK+E GK+ L E L + E + AN K I + + P Sbjct: 1093 SLINDILDFSKLEYGKVTLENESFELLPMIEEVLDSQATAANRKGIDLIFVMGRDYPVPP 1152 Query: 697 -ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYE 752 I D S+K++ LN++ NA+ FT +G ++ IST + S +++ LR V+D+G+G+ + Sbjct: 1153 VIFGDRNSLKKVLLNLVGNAVKFTETGFVLLEISTDYESGDQISLRFTVKDSGIGIPENK 1212 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 +E+ PFGQI S + G+GLGL K +V A MG + Sbjct: 1213 IEQIFVPFGQIDGSFSRKYGGSGLGLSFCKELV-ALMGGY 1251 >gi|66821389|ref|XP_644179.1| histidine kinase [Dictyostelium discoideum AX4] gi|74860304|sp|Q869S5|DOKA_DICDI RecName: Full=Hybrid signal transduction protein dokA gi|60471990|gb|EAL69943.1| histidine kinase [Dictyostelium discoideum AX4] Length = 1671 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 99/340 (29%), Positives = 170/340 (50%), Gaps = 27/340 (7%) Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP----SVMNHYLTEILSL 519 G+ +GIIL N + + GY D+ L TP + L E+ + Sbjct: 929 GVMFSTFKGIILDANDMLLQTIGYTRGDLENGKIDWMLL--TPPEHFEISARALQELKAK 986 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISEWKQEKNKLSHAKKIA 578 Q +EK + K K + + I + S+ +T + D+S ++Q A+ A Sbjct: 987 RWCQPIEKAYIH--KSGKRVPVLITSAMIDGSTEQCITFVFDLSRYRQ-------AEMAA 1037 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 + + K+ F+ +SHE+RTP I+G S+++ + + L N + + + I RS + ++ Sbjct: 1038 IEATRLKTQFITNISHELRTPCHGIVGMSQLLLDSQ---LTNTQR-DNIDSIKRSTDSLI 1093 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-- 696 ++ND+LD SK+E GK+ L E L + E + AN K I + + P Sbjct: 1094 SLINDILDFSKLEYGKVTLENESFELLPMIEEVLDSQATAANRKGIDLIFVMGRDYPVPP 1153 Query: 697 -ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYE 752 I D S+K++ LN++ NA+ FT +G ++ IST + S +++ LR V+D+G+G+ + Sbjct: 1154 VIFGDRNSLKKVLLNLVGNAVKFTETGFVLLEISTDYESGDQISLRFTVKDSGIGIPENK 1213 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 +E+ PFGQI S + G+GLGL K +V A MG + Sbjct: 1214 IEQIFVPFGQIDGSFSRKYGGSGLGLSFCKELV-ALMGGY 1252 >gi|302188965|ref|ZP_07265638.1| PAS [Pseudomonas syringae pv. syringae 642] Length = 595 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 93/375 (24%), Positives = 165/375 (44%), Gaps = 55/375 (14%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L ++L++ DG+ +I+R+G + N + G+ S + H Sbjct: 259 RLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGW-----------------DESRLGHS 301 Query: 513 LTEILSL-DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-------------- 557 L E L +L + L + G T E L I I YS+T Sbjct: 302 LGEALGRPELDEQLHLVLRGGTLERAPEDLAIEIDGESRLLTYSMTPVSHTKGHILGAVM 361 Query: 558 -MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI-IGFSEVIKNQRF 615 +HD++E + + +S+F+ R SHE+RTP+T + + F + + F Sbjct: 362 VLHDVTEQRAFERV--------------RSEFVLRASHELRTPVTGMHMAFGLLQERLHF 407 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P R + N + ++ ++NDLL+ S+ ++G L P S++ + EA + Sbjct: 408 AP--ESREADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLQEAKARF 465 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A E+ I++ +PR+ AD ++++ N+L NA+ TP G +I E Sbjct: 466 EDQAQEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTPPNG-LIRLQARRHGE 524 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 I+ V D G G+ + + +PF Q+ + G GLGL L K +V + G+ ++ Sbjct: 525 RAIISVEDNGEGIAYGQQGRIFEPFVQVGRKK----GGAGLGLALCKEIVQLHGGRMGVY 580 Query: 796 STPAKGTLIEIIFPL 810 S P +GT + PL Sbjct: 581 SRPGQGTQFYMALPL 595 >gi|146340985|ref|YP_001206033.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146193791|emb|CAL77808.1| putative sensor histidine kinase with PAS/PAC and response regulator receiver domains [Bradyrhizobium sp. ORS278] Length = 771 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 77/252 (30%), Positives = 130/252 (51%), Gaps = 24/252 (9%) Query: 559 HDISE-WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 D++E W+ E+ AE ES KSDFLA +SHEIRTP+ ++G + + + Sbjct: 355 RDVTERWRAEQ---------AEAESRAKSDFLAMMSHEIRTPMNGVLGLASTLLETKL-- 403 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM---NLHFEPVSLDEAVSEAISL 674 + I SG+ + I+ND+LD+SK+ +GK+ + F P +L EAV+ ++ Sbjct: 404 --DDEQRHAVMTIRESGDNLQRILNDILDLSKLNAGKLEFETVDFSPSALVEAVT---AI 458 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + + A K +L+ +P L D+ ++Q+ +N+ SNA+ FT GG I + T Sbjct: 459 IGVNAKSKSLLVNADIDPKLPPSLKGDVARIRQVLINLASNAVKFTERGGVTIAVSCRTR 518 Query: 734 NEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 ++ + RV DTG+G+ + K F Q S R GTGLGL +++ +++ G Sbjct: 519 DDHKATIEWRVSDTGIGIPADRVGKLFTDFAQADASINRRFGGTGLGLAISRRIIEQMGG 578 Query: 791 KFYIFSTPAKGT 802 + S +G+ Sbjct: 579 AIAVSSVQGEGS 590 >gi|298531049|ref|ZP_07018450.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509072|gb|EFI32977.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1079 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 130/243 (53%), Gaps = 10/243 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K + +L+ A+ AE + KS+FLA +SHEIRTPL +IG S ++ + + + Sbjct: 546 KSREEELNQARLQAEHATRAKSEFLANMSHEIRTPLNGVIGMSGLLLDTEL----DSQQR 601 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +A + S +L+++ND+LD+SKIE+ ++ L + +L+ V ++ ++ A EK + Sbjct: 602 SFAETLKTSAQTLLNLINDILDLSKIEADRLQLETKGFNLETTVKDSAGILNYQAMEKGL 661 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVIL 739 + + +L D + Q+ +N+L NAI FT S GQ+ + + E ++ Sbjct: 662 KLGYVIHPGVHHCLLGDEGRLSQVLVNLLGNAIKFT-SQGQVDLEVSPVQEEADHVRLLF 720 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ + ++ PF Q+ S GTGLGL + K++V G+ + S+ Sbjct: 721 EVHDTGIGIPEEKQDQLFTPFHQLNTSVTRSFGGTGLGLAICKSLVQMMGGEIGVKSSKG 780 Query: 800 KGT 802 +G+ Sbjct: 781 RGS 783 >gi|238855834|ref|ZP_04646123.1| sensor protein YycG [Lactobacillus jensenii 269-3] gi|282933324|ref|ZP_06338707.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1] gi|238831497|gb|EEQ23845.1| sensor protein YycG [Lactobacillus jensenii 269-3] gi|281302509|gb|EFA94728.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1] Length = 621 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 94/388 (24%), Positives = 184/388 (47%), Gaps = 36/388 (9%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 ++ + E E +L S+L +DG+ +R G ++ N+ ++ + KP T L Sbjct: 254 SQEQSESERRRLDSVLSHMTDGVIATDRHGNVIILNQMALSFLDIKEKEAVNKPITKIL- 312 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSSCYSLTMHD 560 + + + L + ++ + + G T +E +L S +I + F S +HD Sbjct: 313 ----GLADDVSAQELIGNQQEMMITVNEG-TPDEMILHASFSLIRRVTGFVSGAVCVLHD 367 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLG 619 ++E Q+KN+ + + F++ VSHE+RTPLT++ + E + + + P Sbjct: 368 VTE--QQKNE------------NEQRQFVSNVSHELRTPLTSLRAYIEALNDGAWKDPEI 413 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P+++E ++ ++NDLL +S+++ G + E V+ ++ +S ++ + Sbjct: 414 APQFLEVTQ---EETERMIRMINDLLSLSRMDRGVAKMDLEWVNFNDFLSHVLNRFDMIV 470 Query: 680 ---------NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 EK+ I+ N + D + Q+ NI++NAI ++P GG I + + Sbjct: 471 KKDAEKGQEGEKKYSIKRKITNQDLWVEIDTDQMMQVIDNIMNNAIKYSPDGGVITVGLS 530 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + N+ +IL + D G+G+ +L K F ++ ++ GTGLGL +AK +V+A+ G Sbjct: 531 QSQNQ-IILSISDQGLGIPKKDLNKIFDRFYRVDKARSREQGGTGLGLAIAKEIVEAHKG 589 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 + + S KG+ I P S D Sbjct: 590 RIWADSQEGKGSTFYISLPFEPMSEEDD 617 >gi|225017661|ref|ZP_03706853.1| hypothetical protein CLOSTMETH_01590 [Clostridium methylpentosum DSM 5476] gi|224949626|gb|EEG30835.1| hypothetical protein CLOSTMETH_01590 [Clostridium methylpentosum DSM 5476] Length = 1068 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 119/247 (48%), Gaps = 10/247 (4%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA-NYIDRSGNL 636 AE S K +FL+R+SHEIRTPL AI+G + L + + +E + S N Sbjct: 552 AEAASRAKGEFLSRMSHEIRTPLNAILGMGAIAMQH----LDDTKKVENCLKKLTLSSNH 607 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 +L ++ND+LD+SKIESGK+ L EP + +L A EK + +T + Sbjct: 608 LLALINDVLDMSKIESGKVELRSEPFDFRAYLESLSNLYYGQAKEKGLEYKTVLTGEVDE 667 Query: 697 IL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR----VRDTGVGMTNY 751 L D + QI N+LSNA+ FTP+GG I + + +R V DTG G+ Sbjct: 668 TLVGDSLRLNQILTNLLSNALKFTPAGGSIQLRVSQKVQGSNTVRLHFEVTDTGCGIDEQ 727 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 +K + F Q +S + GTGLGL + K + G + S +G+ + P Sbjct: 728 NYQKIFESFEQEDSSVTNKYGGTGLGLSIVKRFSELMGGSVSVSSRLGEGSTFAVELPFQ 787 Query: 812 DTSHPHD 818 T P + Sbjct: 788 KTVQPEN 794 >gi|319788477|ref|YP_004147952.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis 11-1] gi|317466989|gb|ADV28721.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis 11-1] Length = 1046 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 74/257 (28%), Positives = 131/257 (50%), Gaps = 7/257 (2%) Query: 559 HDISEWKQ----EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 H++ +Q ++ L ++ S +KS+FLA +SHE+RTPL + + + ++ R Sbjct: 337 HELEAQRQYLIAARDDLLRSRAELAAASRYKSEFLANMSHELRTPLNSALILARLLAENR 396 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 G L N ++YA I + N +L ++ND+LD+S+IE+G + L E + + V Sbjct: 397 EGTL-NEEQVKYARAIHSANNDLLALINDILDLSRIEAGHVELVDETLHTPQLVERLRET 455 Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + A +K + +R A P + LAD + ++Q+ N+L+NA+ FT G + H Sbjct: 456 FEPLAQQKGLELRMEIAPGAPAQFLADGQRLQQVLKNLLANAVKFTEHGSVALCIEGHGE 515 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + V DTG+G+ + E + F Q S R GTGLGL +++ + + G Sbjct: 516 G-RIRFAVSDTGIGIAREQTEVIFEAFRQADGSTSRRFGGTGLGLAISRDLAERMGGSLT 574 Query: 794 IFSTPAKGTLIEIIFPL 810 + S P +G+ + P+ Sbjct: 575 VESEPGRGSCFTLELPV 591 >gi|312881713|ref|ZP_07741490.1| hybrid sensory histidine kinase BarA [Vibrio caribbenthicus ATCC BAA-2122] gi|309370603|gb|EFP98078.1| hybrid sensory histidine kinase BarA [Vibrio caribbenthicus ATCC BAA-2122] Length = 927 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 77/251 (30%), Positives = 128/251 (50%), Gaps = 8/251 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ Q +Y Sbjct: 275 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTR----QMLKTSLTASQTDYLQT 330 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+ D+LD SK+E+GK+ L P E++ E +SL A+EK + + Sbjct: 331 IEKSADNLLSIIKDILDFSKLEAGKLALENIPFDFQESLEEVVSLQATSAHEKGLELTLK 390 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTG 745 IP ++ D ++QI N++ N+I FT G + + + + E+ VRDTG Sbjct: 391 VDPKIPLGLVGDPLRIQQILTNLVGNSIKFTEYGNIDVSVELRSQKEDSVELQFMVRDTG 450 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G++ + + + F Q S + GTGLGL + + +V G+ + S +G+ Sbjct: 451 IGISERQQSQLFQAFSQADASISRKYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFW 510 Query: 806 IIFPLYDTSHP 816 L T P Sbjct: 511 FTLRLSSTDMP 521 >gi|213401691|ref|XP_002171618.1| peroxide stress-activated histidine kinase mak1 [Schizosaccharomyces japonicus yFS275] gi|211999665|gb|EEB05325.1| peroxide stress-activated histidine kinase mak1 [Schizosaccharomyces japonicus yFS275] Length = 1777 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 74/253 (29%), Positives = 133/253 (52%), Gaps = 11/253 (4%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI + K + KL A + A++ + K+ FL+ +SHEIRTPL I G + + Sbjct: 1118 TCTDIHDHKLLEEKLQEANREAQRMMNSKTRFLSNMSHEIRTPLVGITGMVNFLLDTNL- 1176 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 ++YA+ I +S +L ++ND+LD+SK+E+G M L E S+ + + + Sbjct: 1177 ---TSEQLDYAHTIQQSSEALLSVINDILDLSKVEAGMMKLTHEAFSVRSMMEDTNETLS 1233 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG---GQIIISTTHT 732 A K + + +++P ++ D ++Q+ALN++ NA+ F+ G Q + T Sbjct: 1234 TLAFSKNLELNYVVDHDVPDMVIGDQARLRQVALNVIGNALKFSHEGEVFCQCSVKPTQG 1293 Query: 733 -SNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + E++L+ DTG G + + EK KPF QI +S + G+GLGL +++ +++ + Sbjct: 1294 LAPNEIMLQWECYDTGPGFSKEDEEKIFKPFSQIDDSLTRKHGGSGLGLVISRELIELHE 1353 Query: 790 GKFYIFSTPAKGT 802 G S +G+ Sbjct: 1354 GTMSCTSVKDRGS 1366 >gi|52143444|ref|YP_083385.1| sensor histidine kinase [Bacillus cereus E33L] gi|51976913|gb|AAU18463.1| sensor histidine kinase [Bacillus cereus E33L] Length = 453 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 125/251 (49%), Gaps = 13/251 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E + + L+H EK K++F+A +SHEIRTPLT I G+SE +K L Sbjct: 214 GELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKT--VDHLTEE 271 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + I + ++ +V +LLD S+++S NL+ + V L + + E I + A E Sbjct: 272 EIKQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEE 331 Query: 682 KRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K++ F I RI + D +KQI LNI+ NAI ++ G++ I T + VI Sbjct: 332 KKM----QFIKTIERIELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVI- 386 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 +V+D G+G+ L + F QI N G GLGL + K MV+ + G I S Sbjct: 387 KVKDDGIGIAKEHLPYIEQSFYQINN----HATGAGLGLAIVKKMVELHGGTINIISKEG 442 Query: 800 KGTLIEIIFPL 810 GT I I PL Sbjct: 443 IGTTILIKLPL 453 >gi|172039664|ref|YP_001806165.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171701118|gb|ACB54099.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 765 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 124/238 (52%), Gaps = 6/238 (2%) Query: 577 IAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVI--KNQRFGPLGNPRYIEYANYIDRS 633 +A + ++H KS+FL +SHE+RTPLT IIG S + +Q L + +Y I S Sbjct: 381 VASQAANHSKSEFLGNMSHELRTPLTCIIGLSGTLLHWSQESTTLPLDKQQKYLQTIQNS 440 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +LD++N++L+ S ++SGK L SL + I V A +RI + N Sbjct: 441 GKHLLDMINEILEYSNLQSGKYVLAVREFSLTKVAKNVIQRVSDEAEHRRINLELDLQIN 500 Query: 694 IPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 + AD V+QI ++L+NA+ FTP G + + +N V L V DTG+G+ Sbjct: 501 QQQDSFYADPERVQQILYHLLNNALKFTPENGSVTLRIWRENNH-VSLEVEDTGIGIQEE 559 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ + F Q+ NS++ GTGLGL L K +V+ + G + S +G+ I P Sbjct: 560 KIPLLFESFQQLENSRRRMYGGTGLGLALTKQLVELHGGTIEVESIINQGSTFIIRLP 617 >gi|163853614|ref|YP_001641657.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163665219|gb|ABY32586.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 792 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 122/231 (52%), Gaps = 11/231 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHE+RTPL+A+IG+SE++ + LG + I+ S +L ++ND+ Sbjct: 277 KSQFLANMSHELRTPLSAVIGYSEML-GEELEDLGQAELLPDLRKIESSARHLLGLINDV 335 Query: 645 LDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 LDISKIE+G++ L F+ VSL E V+ A Q +KR R F ++ + D Sbjct: 336 LDISKIEAGRLTLAAETFDVVSLIEDVTAA---TQSLITKKRNRFRLDFEGDLGAMHQDQ 392 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVILRVRDTGVGMTNYELEKAMK 758 ++Q +N++ NA F+ G+II+ + + V DTG+G+T ++ + + Sbjct: 393 LKLRQSLINLIGNAAKFSED-GEIILGVRRLREGGADWLSFSVSDTGIGLTQEQIGRLFE 451 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F Q S + GTGLGL + +A V+ G + ST +G I P Sbjct: 452 RFSQADESTTRQFGGTGLGLAITRAFVERMGGTIGVESTFGEGATFTIRLP 502 >gi|189346303|ref|YP_001942832.1| multi-sensor signal transduction histidine kinase [Chlorobium limicola DSM 245] gi|189340450|gb|ACD89853.1| multi-sensor signal transduction histidine kinase [Chlorobium limicola DSM 245] Length = 590 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 86/357 (24%), Positives = 177/357 (49%), Gaps = 25/357 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++ + I + N G I+ N A S++F ++ +P ++ +++ Sbjct: 252 AVFSGIREAILVTNAAGEIVLVNPAASRMFRIDGAMLMFRPIRKLSDRRLQEIIDGVHEN 311 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574 +L E+++L ++K ++L + + + K S +DI+ +L + Sbjct: 312 KTAL----LKEEVSLATSKGTRILQISSMPVMKNSRSDGTVFVFNDIT-------RLRNL 360 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY-IEYANYIDRS 633 ++I + DF++ VSHE+RTPLT+I G++E + G + +P + + I + Sbjct: 361 ERI-------RRDFVSSVSHELRTPLTSIKGYTETLLE---GAMHDPEHATAFLQIILKE 410 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 + +VND+LD+S+IESGK+ HF PV L + + + ++ +K+I + + ++ Sbjct: 411 SEQLTALVNDVLDLSRIESGKIEYHFAPVDLCRVIEKTVEMLTPAIEKKQIRLERHYQDD 470 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPS-GGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 IP + AD ++ + N+L NA+ + G++ IS T +V + + D G+G+ + Sbjct: 471 IPEVTADAGYLEIVVRNLLDNAVKYVDDRNGRVRISVFRTGM-DVRMEIEDNGIGIAPAD 529 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L++ + F ++ ++ GTGLGL + K +V + G + S +G++ I P Sbjct: 530 LDRIFERFYRVDKARSRTLGGTGLGLAIVKHIVIGHKGHIEVRSRINQGSVFSITLP 586 >gi|325109506|ref|YP_004270574.1| PAS/PAC sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324969774|gb|ADY60552.1| PAS/PAC sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 566 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 102/361 (28%), Positives = 173/361 (47%), Gaps = 12/361 (3%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S+ E +GIAI++ + N AVS+L +I+ +P F+ + YL + Sbjct: 61 SVFENAYNGIAILDAAHCFMEVNPAVSRLLQRQDTEIVGRPLLEFVAPEYREPVTAYLKQ 120 Query: 516 ILSLDLRQT---LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 + + + L + E +S I + L S S + E + Sbjct: 121 LENAGAWRGNFPLMAADGHAIYLEWNMSSHIPGQWLTIVSDVSEQIRYQEERELLLESER 180 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ +E+ + K +FLA +SHE+RTPL+ I+G+S ++ G L + E + I+ Sbjct: 181 TARSESERANQLKDEFLATLSHELRTPLSNIVGWSRLLN---MGGLDDESIREGLDTIES 237 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD--EAVSEAISLVQLYANEKRILIRTSF 690 +GN++ ++ DLLD+++I SGK+ L + VSL+ E + AI V+ A+ K++ + T+ Sbjct: 238 NGNILSQMITDLLDVARIASGKIRL--DTVSLNPVETLEAAIRAVKPSADAKQLGVVTTV 295 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 N I D ++Q+ N+L+NAI FTP+ GQI + + + + DTG GMT Sbjct: 296 DRNAGLIEGDASRLQQVFWNLLTNAIKFTPAEGQIDV-VMQKVGSTIQISIADTGKGMTP 354 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-AKGTLIEIIFP 809 L + F Q + G GLGL + K +VD + G S +G + FP Sbjct: 355 ETLNIIFERFRQADGTTTREHGGLGLGLAITKQLVDLHGGTISAESAGLGQGAKFILSFP 414 Query: 810 L 810 + Sbjct: 415 I 415 >gi|315125755|ref|YP_004067758.1| two-component sensor histidine kinase and response regulator hybrid [Pseudoalteromonas sp. SM9913] gi|315014269|gb|ADT67607.1| two-component sensor histidine kinase and response regulator hybrid [Pseudoalteromonas sp. SM9913] Length = 653 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 138/260 (53%), Gaps = 15/260 (5%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y+L D+ + + E+ K AE E+ K FLA +SHE+RTPL++I+G++E++ Sbjct: 123 YALARRDVEDERVERLK-------AEAENRSKDRFLAHLSHELRTPLSSILGYTELLMLS 175 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 F I R+G +L ++ND+LD+SKI K+ L V+LD +++ + Sbjct: 176 DFSKQAENEL----GVIYRNGKHLLSLLNDVLDLSKIAVDKLELSLGDVNLDSLMADVFT 231 Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 L+++ A +K + ++ +P ++ D V+QI +N+++NAI FT G I+ + T T Sbjct: 232 LMRVSALDKGLSLKFESLEPLPLVIRVDATRVRQILINLINNAIKFTEQGEIIVNAWTET 291 Query: 733 SNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 E +L ++D+G+G+ + KPF QI + + G GLGL + ++ G Sbjct: 292 VAEREMLFFSIKDSGLGIAPEKQALIFKPFEQIADVESRSVGGAGLGLAICSELLSRMQG 351 Query: 791 KFYIFSTPAKGTLIEI-IFP 809 + S +G+ I ++P Sbjct: 352 TISLDSYVGEGSTFTISLYP 371 >gi|294506015|ref|YP_003570073.1| sensor histidine kinase [Salinibacter ruber M8] gi|294342343|emb|CBH23121.1| sensor histidine kinase [Salinibacter ruber M8] Length = 593 Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 83/261 (31%), Positives = 134/261 (51%), Gaps = 7/261 (2%) Query: 556 LTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L +H DI+E K+ + L AK+ AE+ + KS LA +SHEIRTPLT+I GFSEV++ Sbjct: 330 LGIHTDITERKKREQTLREAKERAEEAARLKSAMLANMSHEIRTPLTSITGFSEVLEQNL 389 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 G G+ +A I +S + + +L +SK+ES L E VSL V + + Sbjct: 390 SGQHGD-----FATKIRKSSERLQRTLESVLHLSKLESSVHKLEREEVSLRAVVEDVTAA 444 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 ++ EK + ++T ++ +++ ++ +I N+L NAI FTP+GG + I Sbjct: 445 LRDDLTEKSLALQTEIPDSPVSGISNEDALHRICRNLLENAIKFTPAGGCVGIRLLD-EG 503 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 L + D+G+GM + + F Q EG+GLGL + K + D G+ + Sbjct: 504 RSATLEIEDSGIGMDPENVPGLFQAFRQESEGMAREYEGSGLGLSIVKRLTDELGGEVDV 563 Query: 795 FSTPAKGTLIEIIFPLYDTSH 815 + +GT + PL D +H Sbjct: 564 ETEKGEGTCFAVTLPLTDDAH 584 >gi|300771262|ref|ZP_07081138.1| histidine kinase [Sphingobacterium spiritivorum ATCC 33861] gi|300761932|gb|EFK58752.1| histidine kinase [Sphingobacterium spiritivorum ATCC 33861] Length = 1336 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 128/250 (51%), Gaps = 17/250 (6%) Query: 566 QEKNKLSHAKKIAEKESS---HKSDFLARVSHEIRTPLTAIIG-FSEVIKNQRFGPLGNP 621 Q N+L + +K A+ K DF ++SHEIRTPLT I+ ++++ R G+ Sbjct: 812 QLSNELLYQQKYAKDLDGLYQAKLDFFTKISHEIRTPLTLIVAPLDKLMEQLREKETGS- 870 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ--LYA 679 Y + I ++ + +L +VN+LLD KIE GK+ L + V L + E + L Q + Sbjct: 871 ---YYLSIIKKNVDRLLLMVNELLDFRKIEEGKVELKLQQVMLLPFIQEQVELFQEAFHT 927 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 E R ++ + + D ++ N+L NAI FTP+GG I I +V + Sbjct: 928 GEIRFTLKCTVTE---PVYLDPYQFSKVMSNLLVNAIKFTPAGGSISI-VAERQQSQVAV 983 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 + DTG+G+ +L K F Q S Q+R +G G+GL L KA+V+ + G + ST Sbjct: 984 VIADTGMGIAEEDLGKVFANFYQ---SDQVREKGWGIGLSLCKAIVEQHGGTIRVQSTAQ 1040 Query: 800 KGTLIEIIFP 809 KGT I+ P Sbjct: 1041 KGTAFTILLP 1050 >gi|240141036|ref|YP_002965516.1| putative hybrid histidine kinase; Domains: two PAS, two PAC, His KinaseA, ATPase and two REC (CheY-like) [Methylobacterium extorquens AM1] gi|240011013|gb|ACS42239.1| putative hybrid histidine kinase; Domains: two PAS, two PAC, His KinaseA, ATPase and two REC (CheY-like) [Methylobacterium extorquens AM1] Length = 803 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 121/231 (52%), Gaps = 11/231 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHE+RTPL+A+IG+SE++ + LG + I+ S +L ++ND+ Sbjct: 288 KSQFLANMSHELRTPLSAVIGYSEML-GEELEDLGQAELLPDLRKIESSARHLLGLINDV 346 Query: 645 LDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 LDISKIE+G++ L F+ VSL E V+ A Q +KR R F ++ + D Sbjct: 347 LDISKIEAGRLTLAAETFDVVSLIEDVTAA---TQSLITKKRNRFRLDFEGDLGAMHQDQ 403 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVILRVRDTGVGMTNYELEKAMK 758 ++Q +N++ NA F+ G+II+ + + V DTG+G+T ++ + + Sbjct: 404 SKLRQSLINLIGNAAKFSED-GEIILGVRRLREGGADWLSFSVSDTGIGLTQEQIGRLFE 462 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F Q S + GTGLGL + +A V+ G + ST G I P Sbjct: 463 RFSQADESTTRQFGGTGLGLAITRAFVERMGGTIGVESTFGAGATFTIRLP 513 >gi|239908302|ref|YP_002955043.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798168|dbj|BAH77157.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1011 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 128/247 (51%), Gaps = 10/247 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + E + + L AK+ AE S KS FLA SHEIRTP+ IIG ++ R + Sbjct: 351 LDEQSRMNDVLQKAKEAAESGSRAKSAFLANTSHEIRTPMNGIIGMCNLLLGTRL----S 406 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + +E+ + S N ++ ++ND+LD SKI++GK +L L ++ + + + Sbjct: 407 DKQLEFVRTVHYSANTLMAVINDILDFSKIDAGKFSLEIIEFDLRRVLNMTLRPLTIACQ 466 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI- 738 +K + + + ++P L D ++Q+ N++ NAI FT G ++ + S + + Sbjct: 467 QKGVELILVVSPHMPVFLRGDPARLQQVINNLVGNAIKFTERG-EVAVCVDFLSESDGVA 525 Query: 739 ---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V+DTG+GM+ + E KPF Q+ +S R GTGLGL ++ +++ G+ + Sbjct: 526 YIRFSVKDTGIGMSPQQQEIIFKPFEQVDSSLTRRFGGTGLGLAISSHLIELMGGQLSVE 585 Query: 796 STPAKGT 802 S KG+ Sbjct: 586 SNLGKGS 592 >gi|149178628|ref|ZP_01857214.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] gi|148842554|gb|EDL56931.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] Length = 667 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 122/228 (53%), Gaps = 12/228 (5%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTP+ AI+GF++++ + + P IE A I +G ++ ++ND+ Sbjct: 271 KSAFLANMSHEIRTPMNAILGFNDILLDG----VSQPENIEAARTIKENGQFLIKLINDI 326 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRS 703 LD+SKIE+ KM + P S ++ SL+ + A K + + +P ++ D Sbjct: 327 LDLSKIEAEKMEVEHVPCSPHTLLNNIYSLMNVRAISKGLPLDFQIEGPLPETISTDPTR 386 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMK 758 ++QI +N + NAI FT +G ++ T NE + V D+G+G+ ++ Sbjct: 387 IRQILINTIGNAIKFTETGAVKVV--TRLINEPDRPARLQFDVIDSGIGIDAANIDSLFL 444 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 PF Q +S + GTGLGL ++K + + G+ I S P KGT I Sbjct: 445 PFTQADDSMTRKFGGTGLGLTISKRLTELLGGEITIASEPGKGTTFSI 492 >gi|109899844|ref|YP_663099.1| Hpt sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] gi|109702125|gb|ABG42045.1| Hpt sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] Length = 1498 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 90/270 (33%), Positives = 142/270 (52%), Gaps = 19/270 (7%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H S+ +Q + A+++AE+ S KSDFLA +SHEIRTP+ ++G +EV+ + Sbjct: 839 HANSQLEQAVVETEKARRLAEQASKEKSDFLAIMSHEIRTPMNGVLGMTEVLLSSDL--- 895 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P+ +A + RSG L+LD++N++LD SK+E+GK L PV L+ + E L Sbjct: 896 -KPKQQHFAQLVYRSGRLLLDLLNNILDFSKLEAGKATLESVPVDLEALIEEVCDLFSEA 954 Query: 679 ANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS--------T 729 A K + I + +P++ D ++QI N+ SNAI FT G++ +S T Sbjct: 955 AYNKGLNINAILSPEPLPQVYGDPARLRQIIANLTSNAIKFTER-GEVNVSIRRVACHDT 1013 Query: 730 THTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 H N + + V+DTG+GM +K + F Q S + GTGLGL + K + Sbjct: 1014 EHEGNNKYSGFVFCVQDTGIGMAPDRQQKVFEMFTQADASTTRKYGGTGLGLAICKQLTV 1073 Query: 787 ANMGKFYIFSTPAKGTL--IEIIFPLYDTS 814 G+ + S +G+ ++I PL DTS Sbjct: 1074 LMGGQIGVQSNIGEGSRFSVKIDLPLSDTS 1103 >gi|268591166|ref|ZP_06125387.1| sensor kinase protein RcsC [Providencia rettgeri DSM 1131] gi|291313393|gb|EFE53846.1| sensor kinase protein RcsC [Providencia rettgeri DSM 1131] Length = 924 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 83/254 (32%), Positives = 135/254 (53%), Gaps = 9/254 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG-PL 618 DIS Q + L AE+ + KS FLA VSHE+RTPL IIG E++ QR+ P Sbjct: 428 DISIRVQMEKSLQDVADAAEQANHAKSMFLATVSHELRTPLYGIIGNIELL--QRYELPE 485 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 R + + +D S +L+L I++D+LD SKIES ++ + + + E + ++ Sbjct: 486 KATRLV---STMDNSSSLLLQIISDILDFSKIESKQLKIESKLFNCREVFAFVLANYLPL 542 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 +K+I + + NIP IL D ++Q+ NI++N+I FT SG ++ + Sbjct: 543 VTKKKISLYSFIEPNIPDLILNDPVRLQQVISNIVNNSIKFTESG--FVLLYVWKDENYL 600 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + +RD+G+GMT+ + K PF Q+ + + +GTGLGL + + +V+ G + S Sbjct: 601 KIEIRDSGIGMTHAVVMKLFDPFFQVYDQNNMGHKGTGLGLAICEKLVNLMDGDIEVSSQ 660 Query: 798 PAKGTLIEIIFPLY 811 G+ I PLY Sbjct: 661 IGLGSSFTIRIPLY 674 >gi|254489912|ref|ZP_05103107.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Methylophaga thiooxidans DMS010] gi|224464997|gb|EEF81251.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Methylophaga thiooxydans DMS010] Length = 690 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 126/240 (52%), Gaps = 9/240 (3%) Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 +IA++ K FLA +SHEIR+PL ++G + ++K I+ ID S + Sbjct: 312 RIAKQTDIAKDAFLASMSHEIRSPLNGVVGMTSLLKETHL----TEEQIKMVKAIDTSTS 367 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 + I+ D+LD SKI + K+ L + V L E I + A EK IR S + ++ Sbjct: 368 HLSAIIGDILDFSKISANKIELDYHAVKLVELFQSCIDITLPQAEEKSQYIRLSVSQSLK 427 Query: 696 RIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-ILR--VRDTGVGMTN 750 + AD +KQI +N+LSNA+ FT G I ++ + +N+++ +L+ V D G+GM++ Sbjct: 428 TVFFKADSTRLKQIVINLLSNAVKFTGMQGNIELAISADTNDQMPVLKIMVSDNGIGMSD 487 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 ++ + + F Q S + GTGLGL +++ + + G + S KG+ + PL Sbjct: 488 DQIARLFERFSQADVSTTRKYGGTGLGLAISRNLAELMGGHITVTSKVDKGSRFIVTLPL 547 >gi|110833303|ref|YP_692162.1| sensor histidine kinase [Alcanivorax borkumensis SK2] gi|110646414|emb|CAL15890.1| sensor histidine kinase [Alcanivorax borkumensis SK2] Length = 813 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 137/253 (54%), Gaps = 12/253 (4%) Query: 575 KKIAEKES------SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++++E+ S + +S+FLA +SHEIRTPL IIG +++K PL N N Sbjct: 410 QRVSERTSELNAALNARSEFLAVMSHEIRTPLNGIIGTVDMLKG---SPL-NDEQRHNLN 465 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++SGN +L+++ND+LD S+IE+GKM + +L ++E+++L Q A + Sbjct: 466 VIEQSGNSLLNLINDILDYSRIEAGKMPIEQTSFNLFNLLNESLTLFQHKAQIHSNALTL 525 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGV 746 A N+ R L D ++QI +N++SNA+ FT +G + + +N + + V+D+G Sbjct: 526 DVAPNVSERCLGDPVRLRQILVNLISNAVKFTDNGTITVRAQRDPANSDYLYFEVQDSGT 585 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G++ + + F Q +S R GTGLGL + + +V+ G+ + S P +G+ Sbjct: 586 GISEEQQRRLFDHFQQGDSSTSRRYGGTGLGLAICRQLVEIMGGEIGVDSKPKQGSRFWF 645 Query: 807 IFPLYDTSHPHDC 819 P+ T C Sbjct: 646 RLPIPCTERADTC 658 >gi|83313114|ref|YP_423378.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82947955|dbj|BAE52819.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 658 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 126/240 (52%), Gaps = 6/240 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q + L AK+ AE + KS+FLA +SHEIRTP+ I+G ++ ++ PL Sbjct: 144 RQARITLLDAKEAAEAGTRAKSEFLAVMSHEIRTPMNGILGMVRLLLDR---PL-EAEDR 199 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E + S L+L I++++LD+SK+E+G+M P S ++ +L+ A EK + Sbjct: 200 ERLEMVHHSAELLLGILDNILDLSKVEAGRMEFERSPFSPARTLAGIQTLLSARAREKGL 259 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILRVR 742 + + +P + D ++QI LN+ NA+ FT SG +I + + + V Sbjct: 260 ELSHAIGPEVPEWVEGDGGRLRQILLNLAGNALKFTDSGHVLIRVGLAGDGSGRLEFSVT 319 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ E+ + F Q +S R GTGLGL + + +V+A G+ + S P G+ Sbjct: 320 DTGIGLGEAEIGRLFHAFAQADSSITRRFGGTGLGLAICRRLVEAQGGEIGVESRPGVGS 379 >gi|56422008|ref|YP_149326.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] gi|56381850|dbj|BAD77758.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] Length = 609 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 117/423 (27%), Positives = 190/423 (44%), Gaps = 59/423 (13%) Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 S ++ ++ LAMTF N ++ T +RK+E S Sbjct: 226 SRKVKVYGYDEIGQLAMTF-----------NNLTKKLQEAQATTEGERRKLE-------S 267 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +L +DG+ +R G ++ N A + E +L + + + Y E Sbjct: 268 VLTHMTDGVIATDRRGRVILINDAALNILNVSRETVLSSSIV-----DVLGIADQYTFET 322 Query: 517 LSLDLRQTLEKITLGSTKEEKLL---SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 L L+ R +L I ST EE + SL +I K+ F + + +HDI+E Sbjct: 323 L-LEERDSL--ILDFSTDEELYILRASLSVIQKEGGFVNGLIVVLHDITE---------- 369 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG-NPRYIEYA-NYID 631 EK + F+A VSHE+RTPLT + + E + + + PR+I+ N + Sbjct: 370 ----QEKIDRERRQFVANVSHELRTPLTTMKSYLEALADGAWQDKDIAPRFIQVVQNETE 425 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 R ++ +VNDLL +SK++S L ++ + I +L ++ IR F Sbjct: 426 R----MIRLVNDLLHLSKLDSKDYKLKKTWINFSAYFHKVIDRFELTKSDN---IR--FV 476 Query: 692 NNIPR----ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 IPR I D + Q+ NI+SNA+ ++P GG I ++E +I+ V D GVG Sbjct: 477 RKIPREAIFIEVDEDKITQVLDNIISNALKYSPQGGTITFRVRKLADE-IIVSVSDEGVG 535 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +L K + F ++ ++ + GTGLGL +AK +V A+ G + S KGT I Sbjct: 536 IPKADLAKIFERFYRVDKARSRKLGGTGLGLAIAKEVVLAHGGTIWAESKEHKGTTIYFT 595 Query: 808 FPL 810 PL Sbjct: 596 LPL 598 >gi|253680781|ref|ZP_04861584.1| two-component sensor histidine kinase [Clostridium botulinum D str. 1873] gi|253562630|gb|EES92076.1| two-component sensor histidine kinase [Clostridium botulinum D str. 1873] Length = 781 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 121/229 (52%), Gaps = 7/229 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIG---FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + +F A +SHE++TPL I+ + E++ N+ F + +Y N I ++ ++ IV Sbjct: 526 RVEFFANISHELKTPLNLILSAVQYIELVHNKNFNL---DDFCKYTNIIKQNSYRLVRIV 582 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 N+L+DI+KI+SG +H E ++ E V + Y N K + + I D Sbjct: 583 NNLIDITKIDSGYFQIHAENYNIVELVEDICLYCASYINSKNLELIFDTETEEKIISCDA 642 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 +++I LN+LSNAI FTPSGG+I ++ NE + + V+DTG+G+ E + F Sbjct: 643 LIMERIILNLLSNAIKFTPSGGRITVNIYDKDNE-IQISVKDTGIGIPENRQELIFERFI 701 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 Q+ S EG+G+GL L KA V+ + G + S G+ I P+ Sbjct: 702 QVDKSLSRNHEGSGVGLSLVKAFVNLHNGNIKVKSKVGYGSEFLITLPV 750 >gi|169831575|ref|YP_001717557.1| multi-sensor signal transduction histidine kinase [Candidatus Desulforudis audaxviator MP104C] gi|169638419|gb|ACA59925.1| multi-sensor signal transduction histidine kinase [Candidatus Desulforudis audaxviator MP104C] Length = 444 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 97/363 (26%), Positives = 171/363 (47%), Gaps = 38/363 (10%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 ++ +IL++ +DG+ ++RE ++ N V + FG E L + TV V+ Y Sbjct: 113 RMQAILDSMADGVIAVDRETRVILINPVVEEAFGLNEEASLGR--TVL------EVVRDY 164 Query: 513 LTEIL---SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569 + L +LD + L++ T E ++ + + + P +L DI+E +Q + Sbjct: 165 ELDRLFRQALDSGRPLKQELRILTPEPRIFRVHLTPLRGPQGGVVAL-FRDITERRQLEQ 223 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YAN 628 +++F+A SHE+RTPLT+I GF E +++ G + P + Sbjct: 224 --------------MRTEFVANASHELRTPLTSIRGFIEALRD---GAINEPETARRFLG 266 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+ + + ++V+DLL ++ IE + PV L V A+ A +K + +R Sbjct: 267 IIEEETDRLTELVDDLLKLATIEERRNMFGRLPVELPGVVQRAVDTFASRARQKGVALRV 326 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 A+ +P ++ D + + Q+ +N+L NA+ FT G I + EV V DTG G+ Sbjct: 327 ELADGLPPVIGDQKLLTQMFINLLDNAVKFTEKGEITIRAAAAEGGVEV--EVLDTGAGI 384 Query: 749 TNYELEKAMKPF--GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 L + + F G +Q GTGLGL + K +V+ + G+ + S P KGT + Sbjct: 385 APEHLPRIFERFFRGDKARTQG----GTGLGLAIVKHIVEGHGGRIRVMSKPGKGTTFSM 440 Query: 807 IFP 809 P Sbjct: 441 FLP 443 >gi|149198960|ref|ZP_01876001.1| sensory transduction histidine kinase [Lentisphaera araneosa HTCC2155] gi|149137955|gb|EDM26367.1| sensory transduction histidine kinase [Lentisphaera araneosa HTCC2155] Length = 493 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 130/231 (56%), Gaps = 8/231 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A++ AEK + KS FL+ +SHE+RTPL ++G+++V++N +Y I Sbjct: 160 RAREDAEKANVAKSQFLSNMSHELRTPLNGVLGYTQVLQN---ASDLQDKYKGSLKGIMN 216 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 G +L ++ND+LDISKIE+GK++L ++ V + + VS+ +++ A EK + + S Sbjct: 217 CGEHLLTVINDILDISKIEAGKLDLVYDEVDVLKVVSDTEDILRYKALEKGLSLNHSLDP 276 Query: 693 NIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 IP+ I +D ++QI +N++ NA+ +T SGG + S + + + DTG+G+ Sbjct: 277 EIPQSIKSDPTKLRQILVNLVGNAVKYTASGG--VELKLKKSGDMIKFSIIDTGIGIPKD 334 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + + F Q +Q G GTGLGL + +V+A G+ + S KG+ Sbjct: 335 KQSHVFEAFRQDEGGRQ-EG-GTGLGLAICVKLVEAFGGEIGLESEEGKGS 383 >gi|66043534|ref|YP_233375.1| PAS [Pseudomonas syringae pv. syringae B728a] gi|63254241|gb|AAY35337.1| PAS [Pseudomonas syringae pv. syringae B728a] Length = 595 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 93/375 (24%), Positives = 165/375 (44%), Gaps = 55/375 (14%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L ++L++ DG+ +I+R+G + N + G+ S + H Sbjct: 259 RLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGW-----------------DESRLGHS 301 Query: 513 LTEILSL-DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-------------- 557 L E L +L + L + G T E L I I YS+T Sbjct: 302 LGEALGRPELDEQLHLVLRGGTLERAPEDLAIEIDGESRLLTYSMTPVSHTKGHILGAVM 361 Query: 558 -MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI-IGFSEVIKNQRF 615 +HD++E + + +S+F+ R SHE+RTP+T + + F + + F Sbjct: 362 VLHDVTEQRAFERV--------------RSEFVLRASHELRTPVTGMHMAFGLLQERLHF 407 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P R + N + ++ ++NDLL+ S+ ++G L P S++ + EA + Sbjct: 408 AP--ESREADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLQEAKARF 465 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A E+ I++ +PR+ AD ++++ N+L NA+ TP G +I E Sbjct: 466 EDQAQEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTPPNG-LIRLQARRHGE 524 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 I+ V D G G+ + + +PF Q+ + G GLGL L K +V + G+ ++ Sbjct: 525 RAIISVEDNGEGIAYGQQGRIFEPFVQVGRKK----GGAGLGLALCKEIVQLHGGRMGVY 580 Query: 796 STPAKGTLIEIIFPL 810 S P +GT + PL Sbjct: 581 SRPGQGTQFYMALPL 595 >gi|332702456|ref|ZP_08422544.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552605|gb|EGJ49649.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1066 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 81/275 (29%), Positives = 144/275 (52%), Gaps = 29/275 (10%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++ +K+ + +L A+ AE + KS+FLA +SHEIRTP+ IIG +++ + Sbjct: 653 RDVTAYKELEQELRRARNEAEVANHAKSEFLAAMSHEIRTPMNGIIGMTDL------ALM 706 Query: 619 G--NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 G + + Y +I S + +L+++ND+LD+SK+ESG+M L + L +++ + ++ Sbjct: 707 GGCDSKASSYLGFIKESAHSLLELINDILDLSKVESGRMELEKKAFDLRKSLESLLQPLR 766 Query: 677 LYANEKRILIRTSFANNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTT---- 730 L A K + + +P +L DLR ++Q+ N++ NA+ FT S G I I+ Sbjct: 767 LSAQRKGVELSWYVGPEVPELLMGDDLR-LRQVFTNLVGNALKFT-SWGSITIAIGVAEA 824 Query: 731 ---------HTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 S EE+ L+ V DTG+G+ +L+ + F + + ++ GTGLGL Sbjct: 825 ADSRKTPEPGASQEEISLQATVSDTGIGIPPDKLQHVFESFATLGHDKEY--GGTGLGLA 882 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + K +V+ G + S P +G++ L S Sbjct: 883 ITKKLVEIMGGTIWAESQPGQGSVFGFTVRLARAS 917 >gi|251795530|ref|YP_003010261.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] gi|247543156|gb|ACT00175.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] Length = 591 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 89/364 (24%), Positives = 188/364 (51%), Gaps = 32/364 (8%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 QL S+L+ +G+ +I+ G IL +R +L G +++ + + +Q + Sbjct: 251 QLESVLDNMINGVMMIDPAGKILLMSRRAGELLGISSGELVGRNYAEAKQQ-------YE 303 Query: 513 LTEIL--SLDLRQTL-EKITLGSTKEEKLLSLRII---IKKLPFSSCYSLTMHDISEWKQ 566 L++++ +L+ R+ + E+IT EE+LL L ++ + F L + D++ ++ Sbjct: 304 LSQLIQEALEGREHIREEITF-YFPEERLLELNLVPINQENQEFGGVL-LVLADVTAIRR 361 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + +S+F+A VSHE++TP+ A+ GF+E + R Sbjct: 362 LER--------------MRSEFVANVSHELKTPIAAVKGFAETLLGGAVNDEETARSFLQ 407 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 Y D S L ++ D+L +SKIES ++ L+F PV +D +++ +++++ A +K I + Sbjct: 408 IIY-DESDRLN-RLIGDILALSKIESKRVPLYFSPVEMDSFMTKTVTMMESEAAKKSIKL 465 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 + + + + AD ++QI +N+++N +++TP GG++ ++ + + +++ DTG+ Sbjct: 466 QLEMEHGL-YVEADEDRLRQIMMNVIANGVNYTPEGGKVSVNIESIDEDHIRIQISDTGI 524 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + + F ++ ++ GTGLGL + K +V+ + G + S G+ I Sbjct: 525 GIPKKDLPRIFERFYRVDKARSRSSGGTGLGLSIVKHLVELHKGTIAVTSAVGVGSTFVI 584 Query: 807 IFPL 810 P+ Sbjct: 585 ELPV 588 >gi|163756235|ref|ZP_02163350.1| sensory box histidine kinase/response regulator [Kordia algicida OT-1] gi|161323847|gb|EDP95181.1| sensory box histidine kinase/response regulator [Kordia algicida OT-1] Length = 782 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 86/251 (34%), Positives = 131/251 (52%), Gaps = 9/251 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DIS+ + ++ A+ IAEK + K+ FL+ +SHEIRTPL I+G SE+ + F Sbjct: 383 VIRDISKDIRNMIRIEEARVIAEKSAKAKTTFLSNMSHEIRTPLNVILGLSELFNRKDFT 442 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 G + E I S +L IVND+LD SKIE+GK+N+ + E +S + Sbjct: 443 --GTEKEYENIEAIRFSTENLLMIVNDILDFSKIEAGKLNVQKVDFNFTELISNLNKGFR 500 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 L A EK + + N+IP+ I+ D + QI N++ NAI FT G I ++ T E Sbjct: 501 LKAEEKGLDFSINITNSIPKYIVGDQYRLSQILNNLIGNAIKFTKKGF-INVNITAKVLE 559 Query: 736 EVILR----VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + L+ + D+G G+ L + F Q +S+Q + +GTGLGL + K +V G Sbjct: 560 DKTLQLYFTIEDSGYGIPKENLNSIFESFYQTYHSEQ-KPKGTGLGLSITKELVSLLGGN 618 Query: 792 FYIFSTPAKGT 802 + S GT Sbjct: 619 LTVKSEVNVGT 629 >gi|316931702|ref|YP_004106684.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas palustris DX-1] gi|315599416|gb|ADU41951.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas palustris DX-1] Length = 640 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 114/234 (48%), Gaps = 5/234 (2%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 + S +S LA SHEIRTPL IIG S+++ + YA + SG +L Sbjct: 121 DPASRARSRLLAMASHEIRTPLNGIIGMSQLLLDTSL----TAEQTTYARAVKTSGEALL 176 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-I 697 + ++LLD +++E+GK+ L P L + + + L+ A + + I +P + Sbjct: 177 ALTDELLDNARVEAGKIELDRCPFVLGNLIEDVVELLAPRAQARGLEIAADIDERLPASL 236 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 + D ++Q+ LN+ NAI FT +GG + + E L VRDTG+G+ + Sbjct: 237 IGDAARLRQVLLNLCGNAIKFTEAGGVTLTAEPGDQAAEFRLIVRDTGIGIAPDAQARIF 296 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + F Q GTGLGL ++ +V A G+ + STP +GT + PL Sbjct: 297 REFEQADADIARHFGGTGLGLSISDRIVAAMGGRIALDSTPGQGTTFTVTLPLV 350 >gi|291287635|ref|YP_003504451.1| integral membrane sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] gi|290884795|gb|ADD68495.1| integral membrane sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] Length = 1067 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 127/230 (55%), Gaps = 8/230 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHEIRTP+ A++G S ++ L +Y +Y + I S NL+L+IVND+ Sbjct: 421 KSEFLASMSHEIRTPMNAVLGLSYLMMQTE---LTGKQY-DYISKIRSSANLLLEIVNDV 476 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703 LD SKIE+GK+ L + ++L + + ++++ ++K + ++ NIP ++ D Sbjct: 477 LDFSKIEAGKLELETDVMNLKDNIKRIAGIIEVTVSKKNVSVQLEIDENIPDYLVGDSLR 536 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPF 760 + Q+ N+ +NA FT G I + T N+ ++ + V DTG+G+ ++ F Sbjct: 537 ITQVLNNLATNAAKFTEQGHIEISAFLLTKNKNYAKIRITVSDTGIGIPTDKIPILFDSF 596 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 Q+ Q + G+GLGL ++K +++A + S +G++ I L Sbjct: 597 TQVKRKNQKKQSGSGLGLSISKKILNAMESDITVESKEGEGSVFTFILTL 646 >gi|218709788|ref|YP_002417409.1| hypothetical protein VS_1800 [Vibrio splendidus LGP32] gi|218322807|emb|CAV18984.1| hypothetical protein VS_1800 [Vibrio splendidus LGP32] Length = 565 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 85/277 (30%), Positives = 134/277 (48%), Gaps = 27/277 (9%) Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 C +LT H ++ N+ ++K AE+ DF+A ++HE+RTPL ++G +E+I + Sbjct: 179 CSALT-HQLA-----INRNIESRKRAEESERATRDFVAMINHELRTPLNGLLGSAELISD 232 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 L N + E N + +SG + I+NDLLD SKI +G + L + +L + + Sbjct: 233 TE---LSNSQR-EIVNNLSQSGEFLRTIINDLLDYSKINAGMLELIPKTFALQDLKNTID 288 Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 S+ A EK+I + + +P DL + Q+ +N++ NAI FT G H Sbjct: 289 SIFTNRAIEKQIQFDVNVTDGVPSHFYGDLERITQLFVNLIGNAIKFTDQG--------H 340 Query: 732 TS------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 S N++ I V D+GVG+ ++ +PF Q NS EGTGLGL + + + Sbjct: 341 VSVEIKWLNDQFIFSVEDSGVGIAQSAIKTLFEPFTQADNSSSRNYEGTGLGLAICRKLA 400 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL--YDTSHPHDCI 820 G + S GT I PL DT D + Sbjct: 401 ALMRGDIEVSSIVGSGTTFTISLPLQVVDTLAERDSV 437 >gi|254563550|ref|YP_003070645.1| hybrid histidine kinase [Methylobacterium extorquens DM4] gi|254270828|emb|CAX26833.1| putative hybrid histidine kinase; Domains: two PAS, two PAC, His KinaseA, ATPase and two REC (CheY-like) [Methylobacterium extorquens DM4] Length = 803 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 122/231 (52%), Gaps = 11/231 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHE+RTPL+A+IG+SE++ + LG + I+ S +L ++ND+ Sbjct: 288 KSQFLANMSHELRTPLSAVIGYSEML-GEELEDLGQAELLPDLRKIESSARHLLGLINDV 346 Query: 645 LDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 LDISKIE+G++ L F+ VSL E V+ A Q +KR R F ++ + D Sbjct: 347 LDISKIEAGRLTLAAETFDVVSLIEDVTAA---TQSLITKKRNRFRLDFEGDLGAMHQDQ 403 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVILRVRDTGVGMTNYELEKAMK 758 ++Q +N++ NA F+ G+II+ + + V DTG+G+T ++ + + Sbjct: 404 LKLRQSLINLIGNAAKFSED-GEIILGVRRLREGGADWLSFSVSDTGIGLTQEQIGRLFE 462 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F Q S + GTGLGL + +A V+ G + ST +G I P Sbjct: 463 RFSQADESTTRQFGGTGLGLAITRAFVERMGGTIGVESTFGEGATFTIRLP 513 >gi|110642429|ref|YP_670159.1| sensory histidine kinase AtoS [Escherichia coli 536] gi|191170106|ref|ZP_03031660.1| sensory box histidine kinase AtoS [Escherichia coli F11] gi|110344021|gb|ABG70258.1| sensor protein AtoS [Escherichia coli 536] gi|190909622|gb|EDV69207.1| sensory box histidine kinase AtoS [Escherichia coli F11] Length = 608 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 188/398 (47%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 229 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 288 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 289 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 341 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 342 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 396 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q P+ + EY + + + + + ++ LL+ S+ Sbjct: 397 AHEVRNPLTAIRGYVQILRQQTRDPI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 452 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 453 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL 508 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 509 INAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLSLQKKIFDPFF------TTKAS 562 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 563 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 600 >gi|309702530|emb|CBJ01857.1| two-component system sensor kinase [Escherichia coli ETEC H10407] Length = 608 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 188/398 (47%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 229 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 288 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 289 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 341 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 342 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 396 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q P+ + EY + + + + + ++ LL+ S+ Sbjct: 397 AHEVRNPLTAIRGYVQILRQQTSDPI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 452 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 453 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL 508 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 509 INAVQAISARGKIRIQTWQYSDLQQAISIEDNGCGIDLSLQKKIFDPFF------TTKAS 562 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 563 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 600 >gi|258592529|emb|CBE68838.1| Sensor protein (fragment) [NC10 bacterium 'Dutch sediment'] Length = 683 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 79/240 (32%), Positives = 124/240 (51%), Gaps = 15/240 (6%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A+ +E + KS+FLA +SHEIRTP+ IIG +E++ + + EY + + Sbjct: 105 LEQARAQSEIAARLKSEFLANMSHEIRTPMNGIIGMTELVLDTHL----STEQREYLDLV 160 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRTS 689 S +L ++ND+LD SKIE+GK+NL P SL E + + + L A K + L Sbjct: 161 KSSAESLLGLLNDILDCSKIEAGKLNLEAIPFSLGEILHATLRPLTLQAGRKDLTLTWEI 220 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR-------VR 742 + + ++ D ++QI +N++SNAI FT GG I+ + E LR V Sbjct: 221 LPDVLDTLVGDPTRLRQIVVNLVSNAIKFTERGG---IAVRAQAIVEADLRQCVLYCSVT 277 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ + PF Q+ S + GTGLGL + +V G+ ++ S P G+ Sbjct: 278 DTGIGIPPEKRHVIFDPFIQVDGSTTRQYGGTGLGLTITAHLVTMMGGRIWVESEPGLGS 337 >gi|54307731|ref|YP_128751.1| sensory box sensor histidine kinase/response regulator [Photobacterium profundum SS9] gi|46912154|emb|CAG18949.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium profundum SS9] Length = 1131 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 120/218 (55%), Gaps = 3/218 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +FLA SHE+RTPL ++G +E + GP+ + + I+ SG + ++V+DL Sbjct: 460 KDEFLATTSHELRTPLHGMVGIAESLLAGANGPVQKSQRRQLEMIIN-SGQRLTNLVDDL 518 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD K+ G ++++ V+L AV + L K + I N++P +LAD + + Sbjct: 519 LDYHKMRYGDLDINKHAVNLPSAVRLVLELSSHLLGSKPVRIINQIPNDLPLVLADEQRL 578 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +QI N++ NAI +T S G+II+S+T N ++ ++V DTG G+ +LE +P Q Sbjct: 579 EQILYNLVGNAIKYT-SEGKIILSSTVLEN-QIRIQVVDTGQGIPAEQLEHIFEPLIQAN 636 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G GLGL +++ ++D G Y+ S P GT Sbjct: 637 TGLANYRQGAGLGLSISRQLIDLMGGHLYVSSQPMVGT 674 >gi|254387240|ref|ZP_05002503.1| two-component system sensory histidine kinase [Streptomyces sp. Mg1] gi|194346048|gb|EDX27014.1| two-component system sensory histidine kinase [Streptomyces sp. Mg1] Length = 1339 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 81/268 (30%), Positives = 135/268 (50%), Gaps = 19/268 (7%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I + +QE + +A S++KS+FLA +SHE+RTPL + + + P N Sbjct: 757 IEQARQELEARAQQLSLA---STYKSEFLANMSHELRTPLNS---LLILAQLLAQNPTRN 810 Query: 621 --PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P+ +EYA I +G+ +L ++ND+LD+SK+E+GKM+++ E V L + + + + Sbjct: 811 LTPKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGKMDINPERVHLPQLLDYVDATFRPM 870 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT----------PSGGQIII 727 +K + + A + P +L D ++QI N+LSNA+ FT P+ G I Sbjct: 871 TTQKSLDFTVTTAPDAPADLLTDDSRLRQILRNLLSNAVKFTERGGVELRIEPAAGSEIP 930 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + V RVRDTG+G+ +LE F Q + + GTGLGL +++ + Sbjct: 931 AGLRRRGAIVAFRVRDTGIGIPEQQLESVFGAFQQADGTTSRKYGGTGLGLSISREIAQL 990 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 G STP +G+ + P+ H Sbjct: 991 LGGAVTAESTPGQGSTFTLYLPVSWADH 1018 >gi|239623825|ref|ZP_04666856.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521856|gb|EEQ61722.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 1081 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 133/246 (54%), Gaps = 14/246 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +++K L+ A AE+ ++ KSDFL+R+SHEIRTP+ AIIG S + +G+ + Sbjct: 544 QRQKEDLAAALVAAEQANAAKSDFLSRMSHEIRTPMNAIIGMSTIAAQ----SIGDDEQV 599 Query: 625 EYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 E + I S +L ++ND+LD+S+IESGKM L E + ++ ++ S+ A + Sbjct: 600 EDCISKIGISSRFLLSLINDILDMSRIESGKMLLKNEKIPTEDFLNGINSICYAQAAARG 659 Query: 684 I---LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--HTSNEEVI 738 + I ++ + D ++Q+ +NILSNAI FT GG++ +S + + + Sbjct: 660 VDYECIVDPVLDDY--YMGDAMKLQQVLINILSNAIKFTKEGGKVTLSAALRRKTKNDAV 717 Query: 739 LR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 LR V DTG+GM + +PF Q G+GLGL ++K++VD GK + S Sbjct: 718 LRFIVNDTGIGMGEEFIPHIFEPFSQESTGTTTPYGGSGLGLAISKSIVDMMDGKINVRS 777 Query: 797 TPAKGT 802 GT Sbjct: 778 IKGIGT 783 >gi|254505580|ref|ZP_05117727.1| signal transduction histidine kinase [Vibrio parahaemolyticus 16] gi|219551697|gb|EED28675.1| signal transduction histidine kinase [Vibrio parahaemolyticus 16] Length = 682 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 78/242 (32%), Positives = 130/242 (53%), Gaps = 8/242 (3%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANY 629 L A+++AE+ + K+ FLA +SHE+RTPL AIIG S Q+ L + ++ YA+ Sbjct: 209 LEEARRLAEQSAIAKARFLANMSHEMRTPLNAIIGLS-----QKEHYLASDEQVKNYASL 263 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA-ISLVQLYANEKRILIRT 688 I+RSG +L ++N +LD+SKIE G + L+ E E + A I V+ + + Sbjct: 264 INRSGQHLLKLINSVLDLSKIEQGNVTLYEERFYCSELIDAAKIVFVEAGKEDVDVFFSH 323 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 A + ++AD + Q+ N+ N++ FT G + T + + +IL V DTG+GM Sbjct: 324 QLAADYL-LMADKTKLLQVITNLGYNSLKFTHHGHVEVNLTLDSQLQRLILTVSDTGIGM 382 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + +L + F Q +S GTGLGL +++++++ GK + S KGT + Sbjct: 383 SEAQLGQVFNEFTQADDSISRLYGGTGLGLSISQSLIELMGGKIDVESELEKGTTFTVRV 442 Query: 809 PL 810 P+ Sbjct: 443 PV 444 >gi|104779398|ref|YP_605896.1| alginate biosynthesis sensor protein KinB [Pseudomonas entomophila L48] gi|95108385|emb|CAK13079.1| alginate biosynthesis sensor protein KinB [Pseudomonas entomophila L48] Length = 592 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 98/367 (26%), Positives = 169/367 (46%), Gaps = 39/367 (10%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-------PVEDILRKPFTVFLEQNT 505 +L ++L++ DG+ II+R+G + N + G+ + + L++P LEQ Sbjct: 256 RLQAVLDSIDDGLLIIDRQGRLEHLNPVAQRQLGWDPGRLGMSLAEALQRPE---LEQQL 312 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISE 563 V+ SLD + + + L +E +LL+ + P M HD++E Sbjct: 313 RQVLRGG-----SLD--RPPDDLNLEVDEESRLLTYSLTPVSHPQGPILGAVMVLHDVTE 365 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 + + +S+F+ R SHE+RTP+T + +++ + P G R Sbjct: 366 QRAFERV--------------RSEFVLRASHELRTPVTGMHMAFGLLRERISFPAG-ARE 410 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + + I + ++NDLL+ S+ +SG L P +LDE A + A K+ Sbjct: 411 NDLLDTIAEEMQRLTQLINDLLNFSRYQSGLQKLELAPCALDELFERAQARFAEQAANKQ 470 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 I + +PRI AD + ++ N+L NAI T SGG+I + + E VI+ V D Sbjct: 471 IELLRELEPPLPRIQADAAQLDRVLDNLLHNAIRHTASGGRIRLHARRHA-ERVIISVED 529 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 G G+ + + +PF Q+ + G GLGL L K +V + G+ +FS P +GT Sbjct: 530 NGEGIAYGQQGRIFEPFVQVGRKK----GGAGLGLALCKEIVQLHGGRMGVFSRPGQGTQ 585 Query: 804 IEIIFPL 810 + P+ Sbjct: 586 FYMALPV 592 >gi|39729|emb|CAA37124.1| bvgS product, put. sensor protein [Bordetella parapertussis] Length = 1238 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 83/252 (32%), Positives = 135/252 (53%), Gaps = 9/252 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E + +L AK+ A+ + K+ FLA +SHEIRTP+ AIIG E+ + Sbjct: 695 DITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPADQEP 754 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + I+ A RS +L+++ D+LDI+KIE+GK +L +L AI L A Sbjct: 755 DRQSIQVAYDSARS---LLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRLFDGLA 811 Query: 680 NEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 +K I L+ + + +L D +KQ+ N++ NAI FT + GQ++++ T + E Sbjct: 812 RQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFT-TEGQVVLTVTARPDGEAA 870 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKFYI 794 V V DTG G++ + + KPF Q+ S + GTGLGL +++ +V+ G + Sbjct: 871 HVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVM 930 Query: 795 FSTPAKGTLIEI 806 S P GT + + Sbjct: 931 RSAPGVGTTVSV 942 >gi|294495726|ref|YP_003542219.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292666725|gb|ADE36574.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 637 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/247 (29%), Positives = 135/247 (54%), Gaps = 3/247 (1%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ ++L A + + K +FL+ VSHE++TPLT I G++E++ + G L N I Sbjct: 386 KKNSDELRKANEELKSLDRMKDEFLSNVSHELKTPLTLIKGYTELLCEGKMGQL-NKEQI 444 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E N + R+ + +V+ LL +SKI++ + FE V + E + + +++ A+ K I Sbjct: 445 EVQNKVVRNAERLKRLVDSLLYLSKIQASNVEYVFETVHVKEIIEIILEDMRMIADLKGI 504 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + + ++P+I D + + NI+ NAI FTPSGG++ + T+ ++ + V+DT Sbjct: 505 ELEMNLEEDLPKINGDKDKLTDMITNIVDNAIKFTPSGGKVTV-TSFKKEGDIHIVVKDT 563 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTL 803 G+G+ ++ + F Q+ S+ + GTGLGL ++ + A+ G + S KGT Sbjct: 564 GIGIPEDMIDNLFQRFYQLDASRTRKYGGTGLGLYISMTIAQAHHGDIWATSEGEGKGTE 623 Query: 804 IEIIFPL 810 + I P+ Sbjct: 624 MHIEIPI 630 >gi|240140253|ref|YP_002964731.1| putative sensor protein gacS (Synonyms : lemA) [Methylobacterium extorquens AM1] gi|240010228|gb|ACS41454.1| putative sensor protein gacS (Synonyms : lemA) [Methylobacterium extorquens AM1] Length = 914 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 129/243 (53%), Gaps = 7/243 (2%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + + L AK+ A++ ++ KS FLA +SHEIRTP+ ++ +E++ + PR Sbjct: 251 EIRLRTHDLIEAKQSADEANAAKSVFLATMSHEIRTPMNGMLVMAELLASADL----PPR 306 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 YA I RSG +L I+ND+LD +K+E+G++ + P+S + ++L A Sbjct: 307 QQRYAKVIARSGQSLLAIINDILDFAKVEAGRLEVERIPLSPRDVADTVVTLFAERARSA 366 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVI-L 739 + + ++PR +L D + Q+ N +SNA+ FT +G ++ + H S+ V+ + Sbjct: 367 GLDLAAQIDGDVPRSLLGDPVRLGQVLGNFVSNALKFTATGHVLVRMEMEHESSGRVLRI 426 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ L F Q S R GTGLGL +A+ ++ A G+ + S Sbjct: 427 AVSDTGIGIPQDRLSGIFTAFTQADQSIARRFGGTGLGLSIAERLIAAMGGRVGVESRLG 486 Query: 800 KGT 802 +G+ Sbjct: 487 EGS 489 >gi|172056681|ref|YP_001813141.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171989202|gb|ACB60124.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 464 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 77/251 (30%), Positives = 135/251 (53%), Gaps = 8/251 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I E + NK+ A+ + E + K +FLA VSHE+RTPL+ I G++E+++++ L Sbjct: 213 EIGELAETLNKM--AESLGEVDEQRK-EFLANVSHELRTPLSYIRGYTEMMQDK---ALD 266 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +Y I+R + +VNDLLD++++E + +P+ + + + + ++ A Sbjct: 267 EKTRDQYYQIIERETERLQRLVNDLLDLAQLERDSYPMTKQPLVFSQVLEDVVYRMEPIA 326 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K + I T F + +L D ++Q+ N+L NA+ +TP+ I +ST T E+ I Sbjct: 327 KAKGVSIITDFDPS-QIVLGDNDRLEQVIGNLLDNALRYTPASKHIYLST-KTDGEQTIC 384 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 +RD G G+ LE+ K F ++ S+ + GTGLGL + K ++D + G S Sbjct: 385 SIRDEGEGIPPEHLERLTKRFYRVDKSRTRKDGGTGLGLAITKHIIDRHDGTISFESVLG 444 Query: 800 KGTLIEIIFPL 810 +GT + I PL Sbjct: 445 QGTTVLITLPL 455 >gi|218532474|ref|YP_002423290.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218524777|gb|ACK85362.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 803 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 122/231 (52%), Gaps = 11/231 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHE+RTPL+A+IG+SE++ + LG + I+ S +L ++ND+ Sbjct: 288 KSQFLANMSHELRTPLSAVIGYSEML-GEELEDLGQAELLPDLRKIESSARHLLGLINDV 346 Query: 645 LDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 LDISKIE+G++ L F+ VSL E V+ A Q +KR R F ++ + D Sbjct: 347 LDISKIEAGRLTLAAETFDVVSLIEDVTAA---TQSLITKKRNRFRLDFEGDLGAMHQDQ 403 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVILRVRDTGVGMTNYELEKAMK 758 ++Q +N++ NA F+ G+II+ + + V DTG+G+T ++ + + Sbjct: 404 LKLRQSLINLIGNAAKFSED-GEIILGVRRLREGGADWLSFSVSDTGIGLTQEQIGRLFE 462 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F Q S + GTGLGL + +A V+ G + ST +G I P Sbjct: 463 RFSQADESTTRQFGGTGLGLAITRAFVERMGGTIGVESTFGEGATFTIRLP 513 >gi|150007276|ref|YP_001302019.1| two-component hybrid sensor kinase/response regulator [Parabacteroides distasonis ATCC 8503] gi|149935700|gb|ABR42397.1| two-component sensor histidine kinase, with response regulator receiver domain [Parabacteroides distasonis ATCC 8503] Length = 791 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 82/274 (29%), Positives = 147/274 (53%), Gaps = 22/274 (8%) Query: 546 KKLPFS------SCYSLTMHDISEWKQEKNK---LSHAKKIAEKESSHKSDFLARVSHEI 596 KK+ FS + + +T DI+E K+E+ + L A + A + K+DFL+R+SH+I Sbjct: 237 KKMRFSYYDREKNIWLMTRTDITEIKEERKQKKLLQEALQSANAANRAKTDFLSRMSHDI 296 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTP+ AI+G + + R R + I S L+L+++N++LD+SK+ES K+ Sbjct: 297 RTPINAIVGMTAI---ARLHMDDQMRIADCLKKITISSKLLLNLINEVLDMSKLESDKIM 353 Query: 657 LHFEPVSLDEAVSEAISLVQ--LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714 L E ++E + +VQ A +++ I + + ++ D++ ++Q LN+L+N Sbjct: 354 LTEEAFKINELLESLFVMVQPAFEAKKQKFQIHVTKIKH-ECLIGDVQRIQQALLNMLTN 412 Query: 715 AIHFTPSGGQIIIS-----TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 AI +TP GQI ++ + + + + V D G+GM LEK +PF + + + I Sbjct: 413 AIKYTPEDGQIQLTVEEKPSVYNGYGQFEITVTDNGIGMKPEFLEKVFEPFER-SDDKAI 471 Query: 770 RG-EGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 R +GTGLG+ +++ + G + S KG+ Sbjct: 472 RNIQGTGLGMAISRHIAQIMNGDILVESEYGKGS 505 >gi|119469670|ref|ZP_01612539.1| putative sensor protein [Alteromonadales bacterium TW-7] gi|119446917|gb|EAW28188.1| putative sensor protein [Alteromonadales bacterium TW-7] Length = 1118 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 129/251 (51%), Gaps = 11/251 (4%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 ++H + + + +L AK++AE+ + KS+FLA +SHEIRTP+ ++G +IK + Sbjct: 579 SLHSSQQRIEAEQELVEAKELAEQAVAAKSEFLATMSHEIRTPMNGVLGMLNIIKQTKLD 638 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN---LHFEPVSLDEAVSEAIS 673 +IE A S +L+I+ND+LD SK+E+GK+N + F L V E+ + Sbjct: 639 Q-QQAHHIELA---QSSAESLLNIINDILDFSKMEAGKLNIDSIQFNLPKLLGEVVESFA 694 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 L N K IL T + I++D ++QI N++ NA+ FT +G III+ S Sbjct: 695 LKVEQNNTKLILDATQIT--VSEIISDPNRLRQILNNLIGNAVKFTKNGDVIIIARVDDS 752 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + L V DTG+G+ + F Q S + GTGLGL + K + + G Sbjct: 753 TDGAFLECSVIDTGIGINKNQQTSLFNSFTQADTSTTRQFGGTGLGLTIVKQLCELMDGS 812 Query: 792 FYIFSTPAKGT 802 + S +G+ Sbjct: 813 VNVNSVEGEGS 823 >gi|110597907|ref|ZP_01386189.1| PAS:Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] gi|110340484|gb|EAT58970.1| PAS:Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] Length = 892 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 83/254 (32%), Positives = 135/254 (53%), Gaps = 11/254 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K+ ++L AK+ AE+ K+ FLA +SHEIRTP+ I+G SE++K+ Sbjct: 497 DITEKKKLWSELIAAKEHAEESDRLKTAFLANISHEIRTPMNGIVGLSEILKDPDLSKEE 556 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 YI + ID+S +L ++ND++DIS+IE+GK N+ ++ + + + + A Sbjct: 557 QSLYI---DLIDQSCQRLLYLINDIIDISRIEAGKTNVKISRTPVNTTLRDLHAFFKPLA 613 Query: 680 NEK--RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 +K R+ T +++ I D + QI N+L NA+ FT G I + N+ Sbjct: 614 EQKGLRLSCTTGLSDSESVIETDSTKLTQILTNLLQNALKFTREGH---IDFGYARNKNT 670 Query: 738 I-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + V D+G+G++ K + F Q NS EG GLGL +++A ++ G + S Sbjct: 671 LEFYVADSGIGISPDMQTKIFERFRQADNSLTRNYEGAGLGLSISQAYIEMLGGLISVKS 730 Query: 797 TPAKGTLIEIIFPL 810 T KG+ E IF L Sbjct: 731 TEGKGS--EFIFTL 742 >gi|33597571|ref|NP_885214.1| virulence sensor protein [Bordetella parapertussis 12822] gi|37538294|sp|P40330|BVGS_BORPA RecName: Full=Virulence sensor protein BvgS; Flags: Precursor gi|33573999|emb|CAE38319.1| virulence sensor protein [Bordetella parapertussis] Length = 1238 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 83/252 (32%), Positives = 135/252 (53%), Gaps = 9/252 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E + +L AK+ A+ + K+ FLA +SHEIRTP+ AIIG E+ + Sbjct: 695 DITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPADQEP 754 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + I+ A RS +L+++ D+LDI+KIE+GK +L +L AI L A Sbjct: 755 DRQSIQVAYDSARS---LLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRLFDGLA 811 Query: 680 NEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 +K I L+ + + +L D +KQ+ N++ NAI FT + GQ++++ T + E Sbjct: 812 RQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFT-TEGQVVLTVTARPDGEAA 870 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKFYI 794 V V DTG G++ + + KPF Q+ S + GTGLGL +++ +V+ G + Sbjct: 871 HVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVM 930 Query: 795 FSTPAKGTLIEI 806 S P GT + + Sbjct: 931 RSAPGVGTTVSV 942 >gi|310818442|ref|YP_003950800.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca DW4/3-1] gi|309391514|gb|ADO68973.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca DW4/3-1] Length = 2483 Score = 115 bits (287), Expect = 4e-23, Method: Composition-based stats. Identities = 75/241 (31%), Positives = 127/241 (52%), Gaps = 14/241 (5%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S +KS+FLA +SHE+RTPL +++ ++++ + + G L + +EYAN I SG +L ++ Sbjct: 1768 SKYKSEFLANMSHELRTPLNSLLILAKLLADNKDGNLSG-KQVEYANTIYASGGDLLSLI 1826 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700 N++LD+SK+E+GKM + + L E + A +K + N PR I D Sbjct: 1827 NEILDLSKVEAGKMQVEPRDIVLTELNQFVDRSFRPVAEQKNLSFDVELLANAPRQIRTD 1886 Query: 701 LRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS---NEEVILR--------VRDTGVGM 748 + ++Q+ N+LSNA FT GG Q+++ EV+ R V DTG+G+ Sbjct: 1887 PQRLQQVLKNLLSNAFKFTDEGGVQLVVKLADKGVRFEHEVLKRAKRVIAFVVTDTGIGI 1946 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + + F Q S + GTGLGL +++ + G+ ++ ST KG+ + Sbjct: 1947 AKDKQKLIFEAFQQADGSTARKYGGTGLGLSISREIAKLLGGEIHVESTLGKGSTFTLFL 2006 Query: 809 P 809 P Sbjct: 2007 P 2007 >gi|189467150|ref|ZP_03015935.1| hypothetical protein BACINT_03534 [Bacteroides intestinalis DSM 17393] gi|189435414|gb|EDV04399.1| hypothetical protein BACINT_03534 [Bacteroides intestinalis DSM 17393] Length = 806 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 80/253 (31%), Positives = 130/253 (51%), Gaps = 14/253 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +DI+ K+ + KL A+ AE+ KS FLA +SHEIRTPL +I+GFS ++ Sbjct: 565 YDITPLKETEQKLIIARDKAEELDRLKSAFLANMSHEIRTPLNSIVGFSSLLAETD---- 620 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 EY ++ + L+L +V+D+LD+SKIESG + + ++E+ + I +++ Sbjct: 621 DREERQEYIKIVETNNELLLQLVSDILDLSKIESGTFDFVRSDLDVNESCMKIIKSLEMK 680 Query: 679 ANEKRILIRTSFANNIP--RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 E L+ F +P I D Q+ N ++NA+ FT G I + T+ E Sbjct: 681 VPETVDLV---FEKYMPDCHIYTDKNRFMQVITNFINNALKFTKQ-GTIALGYEQTAPHE 736 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + VRDTGVG+ +++ + F ++ Q GTGLGL + K++V GK + S Sbjct: 737 IKFYVRDTGVGIPKEKIDSIFERFVKLNTFVQ----GTGLGLSICKSLVSQMGGKIGVES 792 Query: 797 TPAKGTLIEIIFP 809 T +G+ P Sbjct: 793 TEGEGSCFWFTHP 805 >gi|83815587|ref|YP_444323.1| sensor histidine kinase [Salinibacter ruber DSM 13855] gi|83756981|gb|ABC45094.1| sensor histidine kinase [Salinibacter ruber DSM 13855] Length = 650 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 83/261 (31%), Positives = 134/261 (51%), Gaps = 7/261 (2%) Query: 556 LTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L +H DI+E K+ + L AK+ AE+ + KS LA +SHEIRTPLT+I GFSEV++ Sbjct: 387 LGIHTDITERKKREQTLREAKERAEEAARLKSAMLANMSHEIRTPLTSITGFSEVLEQNL 446 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 G G+ +A I +S + + +L +SK+ES L E VSL V + + Sbjct: 447 SGQHGD-----FATKIRKSSERLQRTLESVLHLSKLESSVHKLEREEVSLRAVVEDVTAA 501 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 ++ EK + ++T ++ +++ ++ +I N+L NAI FTP+GG + I Sbjct: 502 LRDDLTEKSLALQTEIPDSPVSGISNEDALHRICRNLLENAIKFTPAGGCVGIRLLD-EG 560 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 L + D+G+GM + + F Q EG+GLGL + K + D G+ + Sbjct: 561 RSATLEIEDSGIGMDPENVPGLFQAFRQESEGMAREYEGSGLGLSIVKRLTDELGGEVDV 620 Query: 795 FSTPAKGTLIEIIFPLYDTSH 815 + +GT + PL D +H Sbjct: 621 ETEKGEGTCFAVTLPLTDDAH 641 >gi|82702685|ref|YP_412251.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] gi|82410750|gb|ABB74859.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] Length = 1397 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 78/272 (28%), Positives = 141/272 (51%), Gaps = 16/272 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 ++SE + L A+ AE+ + KS FLA +SHEIRTP+ +IG ++V++ Sbjct: 687 NVSERIRILKDLEQARHEAEQANEAKSIFLAAMSHEIRTPMNGVIGMADVLQQTSL---- 742 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + +E + I S +L+I+ D+LD SKIE+G++ + P+S+++ V +A ++++ A Sbjct: 743 SGYQMEMVDLIRESAFALLEIIEDILDFSKIEAGRLEIEQAPMSVEKVVEKACAMLESLA 802 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG----GQIIISTTHTSN 734 K + + IP +L D ++Q+ +N+ +NAI F+ SG G++ + + Sbjct: 803 ARKAVELTLFLDPAIPDEVLGDALRLRQVLVNLANNAIKFS-SGLQEPGRVSVRALLVEH 861 Query: 735 EE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 ++ V + D G+GM + F Q S R GTGLGL + +V+ G Sbjct: 862 DQDTVTVEFEITDNGIGMNEEVQSRLFTSFTQGDTSTTRRYGGTGLGLAITHHLVELMGG 921 Query: 791 KFYIFSTPAKGTL--IEIIFPLYDTSHPHDCI 820 + S P +G++ + + F L +SH D + Sbjct: 922 SIQVRSAPGEGSVFTVRLSFDLIPSSHMEDKV 953 Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust. Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 14/117 (11%) Query: 399 RLHTIQWNRENSLAMTFIPFEK---ANQFPENMPQNGIEP--EDVDTRINKRKMEIEVM- 452 R+ W+ LA TF + A+ ++ +N + +D++ + +R ++E Sbjct: 364 RVPVAGWDEIGQLASTFNTMTERLTASNRQRDVAENDLRQLNQDLENHVAERTADLEQAN 423 Query: 453 --------QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 ++ SI+E D I I+ + II S N + KLFGY E+++ +P ++ + Sbjct: 424 AVLISKEEEMRSIVEHMVDCIITIDDKSIIRSVNPVIEKLFGYTREEVIGQPVSILM 480 >gi|309804859|ref|ZP_07698921.1| PAS domain S-box protein [Lactobacillus iners LactinV 09V1-c] gi|308165798|gb|EFO68019.1| PAS domain S-box protein [Lactobacillus iners LactinV 09V1-c] Length = 593 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 98/383 (25%), Positives = 179/383 (46%), Gaps = 45/383 (11%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E +L ++L +DG+ +R G I N ++ +P T L Sbjct: 239 ERRRLDNVLMHMTDGVIATDRHGNITIINETALNFLDKTENEVKGEPITQLLG------- 291 Query: 510 NHYLTEILSLDLRQTLEKITL---GSTKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEW 564 L E+ DL T +++ + +T +E +L +I + F S +HDI+E Sbjct: 292 ---LKEVTIQDLMSTQQELIVTANANTHDELILHADFSLIQRVTGFVSGLICVLHDITE- 347 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQRFGPLG 619 Q+KN+ + + F++ VSHE+RTPLT++ + E + KN+ P Sbjct: 348 -QQKNE------------NEQRQFVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAP-- 392 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 ++ I ++ ++NDLL++S+++ G + + E V+L++ +S ++ + Sbjct: 393 -----QFLGVIQNETERMIRMINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMML 447 Query: 680 NE---KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 K+ IR F + + D + Q+ NI++NAI ++P GG I I T ++ Sbjct: 448 KNDGVKKYKIRRIFPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQT-HKH 506 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 VIL V D G+G+ +L + F ++ ++ + GTGLGL ++K +V+A+ GK + S Sbjct: 507 VILSVSDQGLGIPRKDLSRIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADS 566 Query: 797 TPAKGTLIEIIFPLYDTSHPHDC 819 + G+ I P S D Sbjct: 567 SEGNGSTFYISIPYEKMSEEGDM 589 >gi|302325748|gb|ADL24949.1| sensory box histidine kinase/response regulator [Fibrobacter succinogenes subsp. succinogenes S85] Length = 1008 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 85/262 (32%), Positives = 134/262 (51%), Gaps = 16/262 (6%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L + + + + L A A+ +S K +FL +SHEIRTPL A+IG + + Sbjct: 608 LQLEQKEQLETQAEALKQALSAAQAANSAKKEFLNSISHEIRTPLNAVIGLTSIASTH-- 665 Query: 616 GPLGNP-RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 LG+ R + ID+S + +L I+ND+LD+S+IESGK +L P+ L E V E Sbjct: 666 --LGDAERVKDCLVKIDQSSDRLLSIINDILDMSRIESGKFDLKEAPMHLFELVHEVERD 723 Query: 675 VQ--LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST--- 729 ++ L A + + + N+ ++ D ++Q L +LSNAI FT GG I +S Sbjct: 724 IRNDLQAKDLKFELDCVDIND-DEVVCDRERLRQALLKVLSNAIKFTKEGGSISMSVKET 782 Query: 730 --THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN-SQQIRGEGTGLGLPLAKAMVD 786 T +S R++D G+GM+ L+ +PF + S+ +R G GLGL + K V+ Sbjct: 783 PLTKSSYAAYEFRIKDNGIGMSEEFLKTVYEPFARESTVSRDVR--GMGLGLAITKNSVE 840 Query: 787 ANMGKFYIFSTPAKGTLIEIIF 808 G+ I S GT + + F Sbjct: 841 MMGGQIEIASRLHVGTEVTMTF 862 >gi|115373149|ref|ZP_01460451.1| signal transduction histidine kinase (sthk) with cheb and cher activity [Stigmatella aurantiaca DW4/3-1] gi|115369905|gb|EAU68838.1| signal transduction histidine kinase (sthk) with cheb and cher activity [Stigmatella aurantiaca DW4/3-1] Length = 1386 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 79/264 (29%), Positives = 137/264 (51%), Gaps = 14/264 (5%) Query: 556 LTMHDISEWKQ---EKNKL----SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 L + DI+E KQ E+ +L AK+ AE+ + K FLA +SHE+RTPL+ ++ ++ Sbjct: 958 LAIEDITERKQRELERAELLAHAQQAKEEAERANRAKDQFLATLSHELRTPLSTMLMQAQ 1017 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++ R G + + + + I+RS + + +++DLLD+S+I +GK+ + F+ V L V Sbjct: 1018 LL---RRGTMDDAKIKRASEAIERSTKMQVQLIDDLLDVSRIVTGKLRMEFQTVHLPGVV 1074 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 A+ V A K IL T+ ++ + D ++QI N+L+NAI F+ G ++ + Sbjct: 1075 QAALESVSAQAERKSILFETTLDESLGPVSGDPTRLQQIVWNLLANAIKFSAEGQRVSVV 1134 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 L+V D G G+ L++ F Q +S G GLGL + + +V+ + Sbjct: 1135 LERMEG-SARLQVSDRGAGIEAEALQRIFDRFMQEDSSSTRVFGGLGLGLAIVRHLVELH 1193 Query: 789 MGKFYIFSTPAK--GTLIEIIFPL 810 G +P K G + +I PL Sbjct: 1194 GGTVQA-ESPGKGQGAIFTVILPL 1216 >gi|238794689|ref|ZP_04638294.1| Signal transduction histidine-protein kinase atoS [Yersinia intermedia ATCC 29909] gi|238725995|gb|EEQ17544.1| Signal transduction histidine-protein kinase atoS [Yersinia intermedia ATCC 29909] Length = 634 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 94/361 (26%), Positives = 177/361 (49%), Gaps = 34/361 (9%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ---NTPSVMNHYL 513 ILE+ +DG+ ++ G + N A + GY ++++ KP+ E+ N+P V++ Sbjct: 293 ILESAADGVISVDTNGRVTMINPAGELITGYSRKELMGKPYAEVFEKIDFNSP-VLDTLF 351 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKN 569 I + L + +++ + L I +L + +L D++ K+ + Sbjct: 352 RGIKHVALE-------IDYPGKKRTIQLSISTSQLHNAQGDTLGALAIFTDLTARKEVQR 404 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 ++ A+++A + +A V+HE+R PLTAI GF +++K+ +P+ +EY + Sbjct: 405 RIEQAERLATL-----GELMAGVAHEVRNPLTAISGFVQILKDSE----KDPQRLEYTHI 455 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I + + ++ LLD S+ G+ + V+L++ + E++ LV+ E R+ Sbjct: 456 ILKEVQSINRVIQQLLDFSRPRIGR----YHQVNLNQILRESLILVKTKGVEARVDFHVQ 511 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 ++ I AD +KQ+ LNIL NA+ + G+I IST + ++D G G+T Sbjct: 512 LDESLCDIEADGELLKQVLLNILINAVQSIAARGEITISTKKRDEHHQQITIKDNGCGIT 571 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + K PF S GTGLGL +++ ++ ++ G+ + S P KGT II P Sbjct: 572 DDIKSKVFDPFYTTKPS------GTGLGLSISQRIITSHDGEIRLESQPNKGTTFIIILP 625 Query: 810 L 810 + Sbjct: 626 V 626 >gi|299147742|ref|ZP_07040805.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298513925|gb|EFI37811.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 570 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 138/253 (54%), Gaps = 15/253 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ KQ + +L AK+ AE+ KS FLA +SHEIRTPL AI+GFS ++ L Sbjct: 325 DITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDEAEL- 383 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R++ Y + + + L+L++++D+LDISKIE+G ++L V + + E I+ ++ Sbjct: 384 --RHV-YMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIA---TFS 437 Query: 680 NEKR-ILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 ++KR + F N P+I+ AD + Q+ N L+NA+ FT + G I +S + + Sbjct: 438 HKKRDTAVELRFDENSPQIVIDADKNRIMQVLSNFLTNALKFT-TKGSITLSYSLEDESQ 496 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V V DTG G+ + + + F ++ + Q G GLGL + +++V+ GK + S Sbjct: 497 VRFCVTDTGKGIPDEQKHEIFNRFVKLDSFVQ----GAGLGLSICQSLVNRMGGKIGVES 552 Query: 797 TPAKGTLIEIIFP 809 +G+ P Sbjct: 553 REGEGSCFWFTHP 565 >gi|298480139|ref|ZP_06998338.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|299144696|ref|ZP_07037764.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298273948|gb|EFI15510.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298515187|gb|EFI39068.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 399 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 83/282 (29%), Positives = 141/282 (50%), Gaps = 41/282 (14%) Query: 548 LPFSSCYSLTM-HDISE-WK------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 P Y L M DIS+ W+ Q++ +L A+ AE+ KS FLA +SHEIRTP Sbjct: 137 FPLDKEYLLCMCRDISQQWEAEQTNAQQQKELKAARIKAEESDRLKSAFLANMSHEIRTP 196 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 L AI+GFS++I N +Y+ I+R+ ++L++ ND+LD++ +E+ + + Sbjct: 197 LNAIVGFSKLITYATSAEEKN----QYSEIIERNSEMLLNLFNDILDLASLEADSLKFNI 252 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS----------VKQIAL 709 P+ L + + L Q + ++ + N + IL D+ + + QI Sbjct: 253 RPIKL---IDICLQLEQQFCHKTQ--------NGVKLILDDVDTDMYTSGDWNRIIQIIS 301 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 N+LSNA FTP G I + E+ + V+D+G+G+ + + FG++ + Q Sbjct: 302 NLLSNATKFTPKGE---IHFGYREKEDFVEFYVKDSGIGIPAARIATIFRRFGKVDDFVQ 358 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L + +V+ G+ ++ S +G+ PL Sbjct: 359 ----GTGLGLTLCRMLVEKMGGRIWLRSQEGQGSRFYFTLPL 396 >gi|293370018|ref|ZP_06616585.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292634936|gb|EFF53458.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 570 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 138/253 (54%), Gaps = 15/253 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ KQ + +L AK+ AE+ KS FLA +SHEIRTPL AI+GFS ++ L Sbjct: 325 DITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDEAEL- 383 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R++ Y + + + L+L++++D+LDISKIE+G ++L V + + E I+ ++ Sbjct: 384 --RHV-YMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIA---TFS 437 Query: 680 NEKR-ILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 ++KR + F N P+I+ AD + Q+ N L+NA+ FT + G I +S + + Sbjct: 438 HKKRDTAVELRFDENSPQIVIDADKNRIMQVLSNFLTNALKFT-TKGSITLSYSLEDESQ 496 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V V DTG G+ + + + F ++ + Q G GLGL + +++V+ GK + S Sbjct: 497 VRFCVTDTGKGIPDEQKHEIFNRFVKLDSFVQ----GAGLGLSICQSLVNRMGGKIGVES 552 Query: 797 TPAKGTLIEIIFP 809 +G+ P Sbjct: 553 REGEGSCFWFTHP 565 >gi|302383089|ref|YP_003818912.1| PAS/PAC sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302193717|gb|ADL01289.1| PAS/PAC sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 524 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 119/240 (49%), Gaps = 10/240 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KSDFLA +SHEIRTPL +IG + + P E + I SG + +V+D+ Sbjct: 151 KSDFLANMSHEIRTPLNGVIGIVDALSRTGL----EPAQAEMVDLIRDSGTTLERLVSDI 206 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703 LD+SKIE+GK++L L++A+ I +++ A +K + A + L D Sbjct: 207 LDVSKIEAGKLDLELHAFDLEDALRGPIDVMRAKAADKGLAFLVDIAPEVSGTFLGDSTR 266 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPF 760 +KQ+ N+LSNA+ FT G ++ + E+ + L ++DTGVG + F Sbjct: 267 LKQVLTNLLSNAVKFTAEGSVVLTAWVTEDAEDQTFLSLTIQDTGVGFDEEQAALLFGRF 326 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL--YDTSHPHD 818 Q ++ R GTGLGL + ++++ G+ S P G+ I PL D P D Sbjct: 327 NQADSTITRRFGGTGLGLSICRSLMQLMGGEIDASSEPGVGSRFCITLPLPRVDQQAPSD 386 >gi|262196436|ref|YP_003267645.1| signal transduction histidine kinase with CheB and CheR activity [Haliangium ochraceum DSM 14365] gi|262079783|gb|ACY15752.1| signal transduction histidine kinase with CheB and CheR activity [Haliangium ochraceum DSM 14365] Length = 1348 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 88/379 (23%), Positives = 180/379 (47%), Gaps = 26/379 (6%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 ++ E V QL I+ +++D I + +G + + N +L+GY ++ L + N Sbjct: 855 KRSEANVRQLSDIVTSSTDAITAADMQGRLTAWNEGAQQLYGYTADEAL------GMHLN 908 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLG-STKEEKLLSLR-------IIIKKLPFSSCYSL 556 T ++ Y +E R +E+++ G + + + LR I I P + Sbjct: 909 T-MILPEYQSEN-----RSFVERVSRGEQIADVETVRLRKDGHKVEISISLSPLRDVHG- 961 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + +S ++ ++ A++ + + FLA +SHE+R PL ++ + +++++ Sbjct: 962 DIVGVSSIARDISRRKRAERQVRRAIEQRDHFLATLSHELRNPLMGLLTATHILRDEDMQ 1021 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P + R + + I+R + +++DLLD+S++ ++ + + + +AV A+ V Sbjct: 1022 PAAHRRAL---DLIERQSQQMARLLDDLLDVSRMRRDRIEMDKALIDMRKAVRPALEAVS 1078 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A + + + + AD ++Q+A N+L+NAI +TP+G +I +S ++ Sbjct: 1079 GRAQDAGVTLAAEMPEEPVWVYADRTRLQQVAANLLANAIKYTPTGKRIWVSIV-PQDDV 1137 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +L VRD GVG+ E +PF Q + G GLGL L +++ A+ G + S Sbjct: 1138 ALLEVRDEGVGIATELQESIFEPFMQSEEPPRGWEGGMGLGLALVRSIALAHEGSLEVSS 1197 Query: 797 TPA-KGTLIEIIFPLYDTS 814 +G+ P+ DT+ Sbjct: 1198 EGRDRGSTFTFRIPISDTA 1216 >gi|171057767|ref|YP_001790116.1| histidine kinase [Leptothrix cholodnii SP-6] gi|170775212|gb|ACB33351.1| histidine kinase [Leptothrix cholodnii SP-6] Length = 1220 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 138/245 (56%), Gaps = 6/245 (2%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +I +Q +L AK++A+ + KS ++ +SHE+RTPL +I+G++++++ P Sbjct: 732 REIESHRQTDLQLQEAKRVADAANQAKSRYITSISHELRTPLNSILGYAQLLEEDDAMPA 791 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + + I R G+ +L ++ LD+++IESGK+ L +P+ +A+ E L L Sbjct: 792 HRKQAV---SVIRRGGDHLLSLIEGTLDLARIESGKLALAIKPMRFADALHEMAHLFALQ 848 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A K I R+ F ++P + AD + ++QI +N+L NA+ FT SG +I + E Sbjct: 849 AAAKGIGFRSEFDPHLPEAVRADEKRLRQILINLLGNAVKFTVSGD--VILRVQYAREIA 906 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + + D+G GM ELE+ +PF + ++ G GTGLGL +++ + D G+ + ST Sbjct: 907 RVEIIDSGPGMDAAELERVFEPFVRGSSAGATAGGGTGLGLTISRMLCDLMGGEMTVEST 966 Query: 798 PAKGT 802 P G+ Sbjct: 967 PGVGS 971 >gi|157373280|ref|YP_001471880.1| histidine kinase [Shewanella sediminis HAW-EB3] gi|157315654|gb|ABV34752.1| Histidine kinase [Shewanella sediminis HAW-EB3] Length = 1064 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 81/243 (33%), Positives = 128/243 (52%), Gaps = 16/243 (6%) Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHEIRTP+ IIG +++ N N I S +L+I+ND+LD Sbjct: 422 FLATMSHEIRTPMNGIIGMIDLLLTSSL----NRDQRSMTNTIRDSSFSLLNIINDILDF 477 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706 SKIE+GK+ L S+ E + I + A+EKR+ + NIP I D ++Q Sbjct: 478 SKIEAGKLELESLNFSISELLESVIDTITPNADEKRVTLELYTDPNIPHHIQGDPVRIRQ 537 Query: 707 IALNILSNAIHFTP---SGGQIIIS--TTHTSNEEVIL--RVRDTGVGMTNYELEKAMKP 759 + N++ NA+ F+ S G++ I+ SN+ V L ++D G+G+ +LE+ +P Sbjct: 538 VLFNLVGNAVKFSAVQDSRGEVRITLKKKELSNQLVFLTIEIQDNGIGIEAKQLERLFQP 597 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSHP- 816 F Q +S + GTGLGL + + +V+ GK + ST KG++ + + FP + P Sbjct: 598 FTQAESSTTRQFGGTGLGLAICQNLVNLMGGKIDVSSTVGKGSIFKVNLSFPYIERPSPL 657 Query: 817 -HD 818 HD Sbjct: 658 THD 660 >gi|126727385|ref|ZP_01743220.1| sensory box histidine kinase/response regulator [Rhodobacterales bacterium HTCC2150] gi|126703380|gb|EBA02478.1| sensory box histidine kinase/response regulator [Rhodobacterales bacterium HTCC2150] Length = 832 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 97/398 (24%), Positives = 189/398 (47%), Gaps = 31/398 (7%) Query: 438 VDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 ++ RI KR+ +++ ++ +I+ + DG+ + + GIIL N A +FG ED+L+K Sbjct: 198 LNARITKRESDLKQSATRMKTIMGTSLDGVIVCDDNGIILEFNPAAEAMFGTIEEDVLKK 257 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTL---EKITLGSTK---EEKLLSLRIIIKKLP 549 ++ YL +++ EK +G + E + S R +L Sbjct: 258 KIG-------DVIVPDYLRAAHEAGIKRMQANGEKRVVGKGRVRLEARHSSDRTFPVELA 310 Query: 550 FSSC-------YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + + + DIS +++L A+ A K++FL+ +SHEIRTPL Sbjct: 311 IQTAETDQGDVFIAFLRDISHRVAAESELVVARDKALASEKMKTEFLSTMSHEIRTPLNG 370 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 ++G ++++ NP+ + Y++ SG L+++ ++D+LDI++ ++GK++ EPV Sbjct: 371 LLGNMNLLRDTNL----NPKQERFIGYMETSGRLLMNHISDVLDITRYDAGKLSARSEPV 426 Query: 663 SLDEAVSEAISLVQLYA-NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 ++ + + A N L N + + +D ++ + +N++ NA+ FT Sbjct: 427 NVSALFQDIVDNQSGAAFNNSTSLTWNWIGNPMDWVTSDHDRLQHVMMNLIGNAVKFTKD 486 Query: 722 GGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 G++ +S + N E+++++ DTG GM++ + + F + GTGLGL Sbjct: 487 -GEVSVSVENIGNAQEPELLVKIVDTGPGMSDELSARVFEDFVTGTTAYDREVGGTGLGL 545 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 +AK V A G+ + S KG+ P+ P Sbjct: 546 SIAKRFVSALGGEIGVESVLGKGSTFWFKMPVETAEEP 583 >gi|117624413|ref|YP_853326.1| sensory histidine kinase AtoS [Escherichia coli APEC O1] gi|215487438|ref|YP_002329869.1| sensory histidine kinase AtoS [Escherichia coli O127:H6 str. E2348/69] gi|218559137|ref|YP_002392050.1| sensory histidine kinase AtoS [Escherichia coli S88] gi|306814667|ref|ZP_07448829.1| sensory histidine kinase AtoS [Escherichia coli NC101] gi|331658299|ref|ZP_08359261.1| signal transduction histidine-protein kinase AtoS [Escherichia coli TA206] gi|115513537|gb|ABJ01612.1| sensor protein AtoS [Escherichia coli APEC O1] gi|215265510|emb|CAS09912.1| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia coli O127:H6 str. E2348/69] gi|218365906|emb|CAR03648.1| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia coli S88] gi|222033981|emb|CAP76722.1| Signal transduction histidine-protein kinase atoS [Escherichia coli LF82] gi|281179311|dbj|BAI55641.1| two-component sensor kinase [Escherichia coli SE15] gi|294493595|gb|ADE92351.1| sensory box histidine kinase AtoS [Escherichia coli IHE3034] gi|305852061|gb|EFM52513.1| sensory histidine kinase AtoS [Escherichia coli NC101] gi|307626242|gb|ADN70546.1| sensory histidine kinase AtoS [Escherichia coli UM146] gi|312946841|gb|ADR27668.1| sensory histidine kinase AtoS [Escherichia coli O83:H1 str. NRG 857C] gi|320196091|gb|EFW70715.1| Sensory histidine kinase AtoS [Escherichia coli WV_060327] gi|323188053|gb|EFZ73348.1| signal transduction histidine-protein kinase atoS [Escherichia coli RN587/1] gi|323952013|gb|EGB47887.1| hsp90-like protein [Escherichia coli H252] gi|323955987|gb|EGB51740.1| hsp90-like protein [Escherichia coli H263] gi|330912050|gb|EGH40560.1| sensory histidine kinase AtoS [Escherichia coli AA86] gi|331056547|gb|EGI28556.1| signal transduction histidine-protein kinase AtoS [Escherichia coli TA206] Length = 608 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 188/398 (47%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 229 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 288 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 289 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 341 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 342 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 396 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q P+ + EY + + + + + ++ LL+ S+ Sbjct: 397 AHEVRNPLTAIRGYVQILRQQTRDPI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 452 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 453 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL 508 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 509 INAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLSLQKKIFDPFF------TTKAS 562 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 563 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 600 >gi|150010061|ref|YP_001304804.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|149938485|gb|ABR45182.1| two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] Length = 882 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 80/257 (31%), Positives = 131/257 (50%), Gaps = 23/257 (8%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D+++ KQ +N+L AK+ AE+ KS FLA +SHEIRTPL AI+GFS G L Sbjct: 502 EDVTKQKQAENELRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFS--------GLL 553 Query: 619 GNPRYI----EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 + EY N I+ + +L+L ++ND+LD++KIE+G + V +++ S+ Sbjct: 554 AVTENMEDKEEYINIINSNNDLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQS 613 Query: 675 VQLYANEKRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +L A + ++ F IP + D V Q+ N ++NAI FT G I+ Sbjct: 614 SRLKAQDG---VQVCFVEKIPNCILRTDRNRVSQVITNFINNAIKFTTQGS--ILFGYRR 668 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++E+ V+DTG G+ ++ + F ++ + Q GTGLGL + + ++ G Sbjct: 669 RDDELYFYVKDTGCGIAKDKIGQVFTRFVKLNSFVQ----GTGLGLSICQMIIKRLGGDI 724 Query: 793 YIFSTPAKGTLIEIIFP 809 + S KG+ P Sbjct: 725 GVESEQGKGSTFWFTLP 741 >gi|149915148|ref|ZP_01903676.1| two-component hybrid sensor and regulator, putative [Roseobacter sp. AzwK-3b] gi|149810869|gb|EDM70708.1| two-component hybrid sensor and regulator, putative [Roseobacter sp. AzwK-3b] Length = 1108 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 79/252 (31%), Positives = 136/252 (53%), Gaps = 14/252 (5%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KNQRFG 616 + +I + L AK+ AE + K+ ++ +SHE+RTPL AI GF++++ K+ Sbjct: 638 LKEIRAHDRTDRALQEAKEKAEAANLAKTRYMTGLSHELRTPLNAIYGFAQLLEKDPGLA 697 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P + I RS + ++ LLDIS+IE+G+++L + V+L V + S+ Q Sbjct: 698 P-----WRPSITSIRRSSEHLAGLIEGLLDISRIEAGRLDLTRDRVNLRMFVKQVASIFQ 752 Query: 677 LYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SN 734 A +K I R + +P ++ D + ++QI +N+LSNAI +T SG ++S T N Sbjct: 753 EEARKKGIDFRVTTHGFLPTLVGTDEKRLRQIIINLLSNAIRYTDSG---VVSFDLTYRN 809 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E I+ V DTG+G++ + + +PF + Q G G+GLGL + K +V+ G + Sbjct: 810 EVAIITVADTGIGISPDNMTRIWRPF---ERAGQTSGPGSGLGLTITKLLVEILGGDIDV 866 Query: 795 FSTPAKGTLIEI 806 S P +G+ + Sbjct: 867 TSAPGQGSTFRV 878 >gi|42781128|ref|NP_978375.1| sensor histidine kinase [Bacillus cereus ATCC 10987] gi|42737049|gb|AAS40983.1| sensor histidine kinase [Bacillus cereus ATCC 10987] Length = 453 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 125/251 (49%), Gaps = 13/251 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E + + L+H EK K++F+A +SHEIRTPLT I G+SE +K L Sbjct: 214 GELGELAHSLNHMSNKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKT--VDHLTEE 271 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + I + ++ +V +LLD S+++S NL+ + V L + + E I + A E Sbjct: 272 EIKQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEE 331 Query: 682 KRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K++ F I RI + D +KQI LNI+ NAI ++ G++ I T + VI Sbjct: 332 KQM----QFIKTIERIELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVI- 386 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 +V+D G+G+ L + F QI N G GLGL + K MV+ + G I S Sbjct: 387 KVKDEGIGIAKEHLPYIEQSFYQINN----HATGAGLGLAIVKKMVELHGGTINIISKEG 442 Query: 800 KGTLIEIIFPL 810 GT I I PL Sbjct: 443 IGTTILIKLPL 453 >gi|313906156|ref|ZP_07839504.1| multi-sensor hybrid histidine kinase [Eubacterium cellulosolvens 6] gi|313468995|gb|EFR64349.1| multi-sensor hybrid histidine kinase [Eubacterium cellulosolvens 6] Length = 1045 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 85/270 (31%), Positives = 141/270 (52%), Gaps = 21/270 (7%) Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 L S +I L F S ++I + ++ ++ AK+ A+ + KS FLA +SHEIR Sbjct: 396 LCSSSFLIFSLAFGLKVSANYYEI--FNEQYRRIEEAKEAADAANQAKSHFLANMSHEIR 453 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ A++G E+I + + + YA I +GN +L ++ND+LD SKIE+GKM + Sbjct: 454 TPINAVLGMDEMILRE----CEDVNILLYAESIKTAGNTLLGLINDILDFSKIEAGKMEI 509 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAI 716 L +++ +S+V+ A +K + I +P++L D +KQ+ NIL+NA+ Sbjct: 510 LPVEYDLSSVINDLVSMVESRAEKKGLQIILELDEKMPKLLYGDEIRIKQVITNILTNAV 569 Query: 717 HFTPSGGQIIISTTHTSNEEV---------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 +T G T H E+V + V DTG+G+ +LEK F +I + Sbjct: 570 KYTEKGS----VTLHMGYEKVDGEPDEIWMSVSVTDTGIGIKPEDLEKLFSEFERIEEKR 625 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 EGTGLG+ + K +++ MG F + + Sbjct: 626 NRNIEGTGLGMNITKKLLEM-MGSFLVVKS 654 >gi|298375314|ref|ZP_06985271.1| two-component system histidine kinase [Bacteroides sp. 3_1_19] gi|298267814|gb|EFI09470.1| two-component system histidine kinase [Bacteroides sp. 3_1_19] Length = 771 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 132/251 (52%), Gaps = 9/251 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I K +N L A++ AE+ K FLA +SHEIRTPL AI+GFS+++ + PL Sbjct: 518 NIQRIKDTENSLIAARRKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLLNSDM--PLE 575 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 E+ + I ++ +L+L ++ND+LD+S+IESG M+ +E + L + + + QL Sbjct: 576 PEEKAEFIDLITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMM 635 Query: 680 NEK-RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 E + IR I R +D + Q+ N ++NA+ FT G I + ++ Sbjct: 636 PEGVELKIRVPHEPLIIR--SDHFRLTQVCTNFINNAVKFTAKGYIEIGYELSADGKSIL 693 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V+DTG G+ + + EK + F ++ Q GTGLGL + +++V G + S Sbjct: 694 ISVKDTGKGIPDDKKEKVFERFQKLDEFAQ----GTGLGLAICQSIVHTFHGSISLESEV 749 Query: 799 AKGTLIEIIFP 809 + G+ I P Sbjct: 750 SVGSKFTISLP 760 >gi|262382099|ref|ZP_06075237.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262297276|gb|EEY85206.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 771 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 131/251 (52%), Gaps = 9/251 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I K +N L A++ AE+ K FLA +SHEIRTPL AI+GFS+++ + PL Sbjct: 518 NIQRIKDTENSLIAARRKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLLNSDM--PLE 575 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 E+ + I ++ +L+L ++ND+LD+S+IESG M+ +E + L + + + QL Sbjct: 576 PEEKAEFIDLITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMM 635 Query: 680 NEK-RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 E + IR I R +D + Q+ N ++NA+ FT G I + ++ Sbjct: 636 PEGVELKIRVPHEPLIIR--SDHFRLTQVCTNFINNAVKFTAKGYIEIGYELSADGKSIL 693 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V+DTG G+ + + EK + F ++ Q GTGLGL + +++V G + S Sbjct: 694 ISVKDTGKGIPDDKKEKVFERFQKLDEFAQ----GTGLGLAICQSIVHTFHGSISLESEV 749 Query: 799 AKGTLIEIIFP 809 G+ I P Sbjct: 750 GVGSKFTISLP 760 >gi|254442840|ref|ZP_05056316.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198257148|gb|EDY81456.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 575 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 80/267 (29%), Positives = 142/267 (53%), Gaps = 23/267 (8%) Query: 561 ISEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 ++ ++EKN L + + AE S + DFLA +SHEIRTP+ ++ ++ + + Sbjct: 176 LTALEREKNALLERLSRKAQTAQQAENRSDQRGDFLAVMSHEIRTPMNGVLAIADDLLSY 235 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + + I SG ++ I++D+LD SKIE+GK+++ E L A S + Sbjct: 236 DL----DREIKDRVEMIKLSGESLVRILDDVLDFSKIEAGKLDVKLESFDLVFACSATYA 291 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 L + A+EK + R + + PR IL D ++Q+ N+LSNA+ FT G++++S Sbjct: 292 LFKSRADEKELNYRLDISEDTPRHILGDSVRLRQVIANLLSNALKFTEE-GKVVLSVGRE 350 Query: 733 SNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK---AMVDA 787 + E+ + + V DTG+G+ K + F Q + + +GTGLGL ++K A++D Sbjct: 351 TREKEGIFISVSDTGMGIDADRFHKLFESFAQAESG--LEEKGTGLGLAISKRLAALMDG 408 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTS 814 ++ Y S P KG++ ++ P + S Sbjct: 409 DLS--YAASFP-KGSVFKLWIPYFKGS 432 >gi|296535743|ref|ZP_06897908.1| cytoplasmic sensor hybrid histidine kinase [Roseomonas cervicalis ATCC 49957] gi|296263931|gb|EFH10391.1| cytoplasmic sensor hybrid histidine kinase [Roseomonas cervicalis ATCC 49957] Length = 689 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 82/256 (32%), Positives = 136/256 (53%), Gaps = 8/256 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K+ +L+ A+ A KS FLAR+SHE+RTPL I+GF++V+ N P Sbjct: 436 DITELKRAMQELAAARDAAAAAGEAKSQFLARMSHELRTPLNGILGFAQVLLND---PRL 492 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P E + + +L++VN LLD+SKI +GK+ L +P +L + + +L+ Sbjct: 493 APDQREQLRVLHEASRHLLELVNGLLDLSKIAAGKLELQPQPTALAPLLERSAALLAPEV 552 Query: 680 NEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIII-STTHTSNEEV 737 K + A ++ P + AD ++Q+ LN+LSNA+ FTP GG++ + + T + Sbjct: 553 QRKSLQFALDLAPDLPPAVAADATRLRQLLLNLLSNAVKFTPHGGRVTLRARTLPDGPGL 612 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR---GEGTGLGLPLAKAMVDANMGKFYI 794 L V DTG G+ + + F Q+ + + G GTGLGL +A + + G+ Sbjct: 613 RLEVEDTGPGVPAEQRHLLFRDFVQLASPVAMPHEIGIGTGLGLSIAAQLAELMGGRIGY 672 Query: 795 FSTPAKGTLIEIIFPL 810 + P +G++ + PL Sbjct: 673 LAGPVRGSVFWVELPL 688 >gi|260772841|ref|ZP_05881757.1| signal transduction histidine kinase [Vibrio metschnikovii CIP 69.14] gi|260611980|gb|EEX37183.1| signal transduction histidine kinase [Vibrio metschnikovii CIP 69.14] Length = 578 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 89/293 (30%), Positives = 147/293 (50%), Gaps = 21/293 (7%) Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL----SHAKKIAEKESS 583 + LG K + L + +++ F ++DI E K+E L +H IA++++ Sbjct: 149 LLLGGRKGQFSLETKATLQR--FRPLLERAINDI-EHKEELQSLVRIKTHELYIAQQQAE 205 Query: 584 H----KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 H KS FLA +SHE+RTPL A++G +V++ N ++ ++ S L+L Sbjct: 206 HANQAKSQFLAMMSHELRTPLNAVLGLIDVLRED-----SNRSQLDLLEQMENSAELLLV 260 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--RILIRTSFANNIPRI 697 I+ND+LD+S+IESG L V L + + A+S K R +RTS ++ Sbjct: 261 IINDILDLSRIESGHFKLQCHWVHLHKKLVHALSYHHKACVTKGIRFNVRTSICDHYEYW 320 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 + +R + QI N++ NAI FT +G + T+ E+++ V DTG+G+ +E Sbjct: 321 VDPVR-LMQILFNVIGNAIKFTEAGS--VDVRLSTARNELVIHVEDTGIGIEPERIEHLF 377 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 PF Q +S GTGLGL + K +V+ G + S +G+ I P+ Sbjct: 378 SPFIQADSSITRHYGGTGLGLAITKHLVELMKGTISVSSCLGQGSHFIIRLPV 430 >gi|242280945|ref|YP_002993074.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123839|gb|ACS81535.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 758 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 79/258 (30%), Positives = 135/258 (52%), Gaps = 9/258 (3%) Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 S +S + + E K+ + +L AK AE + KS+FLA +SHEIRTPL I+G +++ Sbjct: 352 SLFSKNVALVLERKKSEERLIAAKLEAESANIAKSEFLANMSHEIRTPLNGIMGMLQLM- 410 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 R G + N + E + S + ++ D+LDI++IESG + + L A++ Sbjct: 411 --RMGEM-NQKQEEQCGFAMESCKRLNKLLGDILDITRIESGHLQIVDAEFDLHNALNSV 467 Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII---- 726 +L + A +K I +R A N+P+ ++ D+ + QI N++ NA+ FT SG ++ Sbjct: 468 QALFKPAAIQKNIDLRVEIAGNVPKTMIGDINRLHQIFNNLIGNALKFTDSGFVLVEAYL 527 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + + ++ V D+G+G+ + +L+ F QI S+ EG GLGL + K +++ Sbjct: 528 LDRNQNGSYHILFSVSDSGIGIEDSKLDSIFNSFTQIETSRTRNYEGAGLGLAIVKQLLE 587 Query: 787 ANMGKFYIFSTPAKGTLI 804 G I S GT I Sbjct: 588 LMGGTLSISSEINVGTSI 605 >gi|332527370|ref|ZP_08403426.1| two-component hybrid sensor and regulator [Rubrivivax benzoatilyticus JA2] gi|332111779|gb|EGJ11759.1| two-component hybrid sensor and regulator [Rubrivivax benzoatilyticus JA2] Length = 1201 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 70/215 (32%), Positives = 112/215 (52%), Gaps = 8/215 (3%) Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHEIRTP+ AIIG + + N +PR +Y I +G +L +ND+LD SKIE Sbjct: 564 MSHEIRTPMNAIIGMTALALNTEL----SPRQRDYLQKIQSAGRSLLATINDILDFSKIE 619 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALN 710 +GK+ + L+E V E + A K + +P R++ D + Q+ LN Sbjct: 620 AGKLEIERREFDLEEVVGEVCDQLAARAAAKGLEFVVDLGPEVPRRLVGDPLRLGQVLLN 679 Query: 711 ILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQ 767 + NA+ FT GG + + + +V+LR V+D+G+G+ + + + F Q +S Sbjct: 680 LCGNAVKFTEQGGVCVRLRVQRQTEGQVLLRCAVQDSGIGLGEEQRSRLFQSFQQADSSI 739 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 R GTGLGL +AK +V+ G+ + S P G+ Sbjct: 740 TRRYGGTGLGLVIAKRLVELQGGEIGVDSQPGVGS 774 >gi|301307858|ref|ZP_07213814.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|300834201|gb|EFK64815.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 767 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 81/250 (32%), Positives = 128/250 (51%), Gaps = 12/250 (4%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 ++W++ +L K+ AE KS FLA +SHEIRTPL AI+GFSE++ +P Sbjct: 527 TKWEKMIQQLKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVT-----CDDP 581 Query: 622 R-YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 EY N I + L+L ++ND+LD+SKIESG + E +L + +E +Q Sbjct: 582 EEKKEYINIIQSNNELLLRLINDILDLSKIESGIIERRKENFNLAKVCNELFVTIQAKMT 641 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + +R N+ +L D +KQ+ +N L+NA+ T SG I + + + Sbjct: 642 NPNVELRLDGPNSECWVLLDRNRLKQVWMNFLTNAVKCTKSG--YIKMGYGIERKGLRIY 699 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+G+ + +K F ++ Q GTGLGL +++A+V+A G+ S Sbjct: 700 VEDTGIGIPDDLHDKVFTRFEKLNEFSQ----GTGLGLTISRAIVEAAGGEVGFTSKLGV 755 Query: 801 GTLIEIIFPL 810 G+ PL Sbjct: 756 GSTFWAWLPL 765 >gi|256838871|ref|ZP_05544381.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|256739790|gb|EEU53114.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] Length = 882 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 80/257 (31%), Positives = 131/257 (50%), Gaps = 23/257 (8%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D+++ KQ +N+L AK+ AE+ KS FLA +SHEIRTPL AI+GFS G L Sbjct: 502 EDVTKQKQAENELRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFS--------GLL 553 Query: 619 GNPRYI----EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 + EY N I+ + +L+L ++ND+LD++KIE+G + V +++ S+ Sbjct: 554 AVTENMEDKEEYINIINSNNDLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQS 613 Query: 675 VQLYANEKRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +L A + ++ F IP + D V Q+ N ++NAI FT G I+ Sbjct: 614 SRLKAQDG---VQVCFVEKIPNCILRTDRNRVSQVITNFINNAIKFTTQGS--ILFGYRR 668 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++E+ V+DTG G+ ++ + F ++ + Q GTGLGL + + ++ G Sbjct: 669 RDDELYFYVKDTGCGIAKDKIGQVFTRFVKLNSFVQ----GTGLGLSICQMIIKRLGGDI 724 Query: 793 YIFSTPAKGTLIEIIFP 809 + S KG+ P Sbjct: 725 GVESEQGKGSTFWFTLP 741 >gi|224538200|ref|ZP_03678739.1| hypothetical protein BACCELL_03091 [Bacteroides cellulosilyticus DSM 14838] gi|224520195|gb|EEF89300.1| hypothetical protein BACCELL_03091 [Bacteroides cellulosilyticus DSM 14838] Length = 928 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 80/254 (31%), Positives = 134/254 (52%), Gaps = 14/254 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +DI+E K+ + KL AK+ AE+ KS FLA +SHEIRTPL AI+GFS ++ Sbjct: 686 YDITELKETEQKLIEAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSSLLVETE--DQ 743 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 G R EY+ ++ + L+L +++D+LD+SKIE+G + + ++ + ++L Sbjct: 744 GEKR--EYSKMVEENNELLLQLISDILDLSKIEAGTFDFKIRDLDVNTLCGDVQRSMKLR 801 Query: 679 ANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 L+ F +P I++D + Q+ N ++NAI FT + G I I + Sbjct: 802 VKPGVELL---FEPTLPSCVIVSDPNRLHQVVANFVNNAIKFTTT-GYIRIGYDQPDAKH 857 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + V DTG+G+ EK F ++ + Q GTGLGL ++K++++ G + S Sbjct: 858 LRIYVSDTGIGIAPEACEKIFDRFIKLNSFVQ----GTGLGLSISKSIIEQLGGTIGVDS 913 Query: 797 TPAKGTLIEIIFPL 810 KG+ I P+ Sbjct: 914 ELGKGSTFWFILPV 927 >gi|209809181|ref|YP_002264719.1| response regulator, histidine kinase [Aliivibrio salmonicida LFI1238] gi|208010743|emb|CAQ81135.1| response regulator, histidine kinase [Aliivibrio salmonicida LFI1238] Length = 735 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 82/242 (33%), Positives = 135/242 (55%), Gaps = 11/242 (4%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 NKL +K+IAE + KS F+A +SHE+RTPL AI+G S + + + N Sbjct: 353 NKLKKSKEIAESANIKKSKFIANISHELRTPLNAILGLSLYL----IEKEEDQEKKKTLN 408 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + ++G +L++VND+LD+SKIE+ K + EP S+D ++ I ++ +N K I I Sbjct: 409 TLYKAGEGLLEMVNDILDLSKIEANKTISNKEPNSIDNIITNIIDVISFQSNSKNIKIDY 468 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILRVRDT 744 N + D + + +I +N+LSN+I FT GG+I I+ + + + +++L D Sbjct: 469 K-KNEFYNLNIDKKHLNKIVMNLLSNSIKFTDKGGKININVKYINSTNLSTDLVLEFTDN 527 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G G+ ++E+ PF QI + Q + +GTGLGL + K +++ G I S +GT I Sbjct: 528 GRGIEKKDIERIFNPFEQIHD--QDKDQGTGLGLFITKKIIEDMNGNISIESEVGEGTSI 585 Query: 805 EI 806 I Sbjct: 586 FI 587 >gi|126740052|ref|ZP_01755742.1| hypothetical protein RSK20926_15236 [Roseobacter sp. SK209-2-6] gi|126718871|gb|EBA15583.1| hypothetical protein RSK20926_15236 [Roseobacter sp. SK209-2-6] Length = 831 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 126/227 (55%), Gaps = 7/227 (3%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q N+L A+ AE+ K++FLA +SHEIRTP+ IIG ++++ G G +Y+ Sbjct: 438 QRNNELEEARIAAERADRAKTEFLANMSHEIRTPMNGIIGMADLMSESNLGE-GERQYL- 495 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + I S + +L I+ND+LD+S++E+GK+ + L +S A++L++ A EK + Sbjct: 496 --DTIRDSSHALLKIINDILDLSRMEAGKLAISPVDFDLQRCISGAVNLLRPRAREKGLW 553 Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRD 743 + SF +P ++ D ++Q+ +N++ NA+ FT SGG I +S + + V D Sbjct: 554 LSLSFEEGLPGLMRGDDGRIRQVLVNLVGNAVKFTHSGGVDIRVSKVAGDPYHLQIEVED 613 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 TG+G+ + F Q + GTGLGL ++ +++ + MG Sbjct: 614 TGIGIKPEQAAHIFDRFSQADAAITRSFGGTGLGLTIS-SILASRMG 659 >gi|33601971|ref|NP_889531.1| virulence sensor protein [Bordetella bronchiseptica RB50] gi|34978360|sp|P26762|BVGS_BORBR RecName: Full=Virulence sensor protein BvgS; Flags: Precursor gi|33576409|emb|CAE33487.1| virulence sensor protein [Bordetella bronchiseptica RB50] Length = 1238 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 108/379 (28%), Positives = 185/379 (48%), Gaps = 36/379 (9%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 ++E M++ +++ T + I + ++EG +L N A FG + +L K P+ Sbjct: 580 QLEFMRV--LIDGTPNPIYVRDKEGRMLLCNDAYLDTFGVTADAVLGKTIPEANVVGDPA 637 Query: 508 V---MNHYLTEILSLDLRQTLE--KITL-GSTKE---------EKLLSLRIIIKKLPFSS 552 + M+ +L +S + E +TL G T+ + L L+ II Sbjct: 638 LAREMHEFLLTRMSAEREPRFEDRDVTLHGRTRHVYQWTVPYGDSLGELKGIIGG----- 692 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 DI+E + +L AK+ A+ + K+ FLA +SHEIRTP+ AIIG E+ Sbjct: 693 -----WIDITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALL 747 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + + + I+ A RS +L+++ D+LDI+KIE+GK +L +L AI Sbjct: 748 RPADQEPDRQSIQVAYDSARS---LLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAI 804 Query: 673 SLVQLYANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + A +K I L+ + + +L D +KQ+ N++ NAI FT + GQ++++ T Sbjct: 805 RVFDGLARQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFT-TEGQVVLTVTA 863 Query: 732 TSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDA 787 + E V V DTG G++ + + KPF Q+ S + GTGLGL +++ +V+ Sbjct: 864 RPDGEAAHVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVEL 923 Query: 788 NMGKFYIFSTPAKGTLIEI 806 G + S P GT + + Sbjct: 924 MGGTLVMRSAPGVGTTVSV 942 >gi|299145530|ref|ZP_07038598.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298516021|gb|EFI39902.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 810 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 81/258 (31%), Positives = 132/258 (51%), Gaps = 24/258 (9%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQ 613 +DI+ K+ + KL A+ AE+ KS FLA +SHEIRTPL AI+GFS ++ +N+ Sbjct: 565 YDITPLKETEQKLIIARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDSRNE 624 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 R EY + + L+L +++D+LD+SKIE+G N + V ++E +E I Sbjct: 625 R---------QEYIKIVQENNELLLQLISDILDLSKIEAGTFNFVYTNVDVNETCAEIIK 675 Query: 674 LVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + + ++ LI F P I D Q+ N ++NA+ FT G I + Sbjct: 676 SMSMKVSKGVELI---FEEPFPECYIYTDKNRFTQVISNFINNALKFTQQGS-ITLGYEQ 731 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 S++++ VRDTG+G+ + + + F ++ Q GTGLGL + K++V G+ Sbjct: 732 VSHQKIKFYVRDTGMGIPEEKQKSVFERFVKLNTFVQ----GTGLGLSICKSIVSQMGGE 787 Query: 792 FYIFSTPAKGTLIEIIFP 809 + ST G+ P Sbjct: 788 IGVDSTEGIGSCFWFTHP 805 >gi|293394393|ref|ZP_06638692.1| virulence sensor histidine kinase BvgS [Serratia odorifera DSM 4582] gi|291423082|gb|EFE96312.1| virulence sensor histidine kinase BvgS [Serratia odorifera DSM 4582] Length = 1209 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 76/257 (29%), Positives = 137/257 (53%), Gaps = 13/257 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE--VIKNQRFGP 617 DI+E + L A++ AE+ + KS FLA +SHEIRTP++AIIG E V + + Sbjct: 687 DITEHQALAKALHDARENAEQANRAKSTFLATMSHEIRTPVSAIIGLLELAVKTSDQARD 746 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 +P + + S ++ ++ D+LD+++IESG++ L E + E + + + + Sbjct: 747 REDPVRVAW-----ESARSLMGVIGDILDMARIESGRLELSPEWLRTTELLPPVVRVFEG 801 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTS 733 A +K + +R+S +P I D ++Q+ N++SNA+ FT GG I ++ Sbjct: 802 LARQKGLRLRSSLPTQLPYEIFVDPLRIRQVISNLVSNAVKFTEQGGIDIDLDLAALPDG 861 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ + V+D+G G++ E + P+ Q N + G G+GLGL + +V+ G+ Sbjct: 862 RAQLNISVQDSGRGISEAEQQDIFDPWVQAKNG-SVTG-GSGLGLAICAQLVNMMGGEIA 919 Query: 794 IFSTPAKGTLIEIIFPL 810 + S PA+GT + P+ Sbjct: 920 MSSRPAQGTRVSFSIPV 936 >gi|225418770|ref|ZP_03761959.1| hypothetical protein CLOSTASPAR_05994 [Clostridium asparagiforme DSM 15981] gi|225041704|gb|EEG51950.1| hypothetical protein CLOSTASPAR_05994 [Clostridium asparagiforme DSM 15981] Length = 1133 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 117/226 (51%), Gaps = 8/226 (3%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 ++ KSDFL+R+SHEIRTP+ AIIG S I Q G + + + + I S +L ++ Sbjct: 674 NAAKSDFLSRMSHEIRTPMNAIIGMS-TIAAQSIGD--DEQVADCISKIGISSRFLLSLI 730 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILAD 700 ND+LD+S+IESGKM L E + ++ + S+ A K + + + D Sbjct: 731 NDILDMSRIESGKMLLKSERIPTEDFLGGINSICYSQAAVKGVEYECIVDPVLSDYYMGD 790 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--NEEVILR--VRDTGVGMTNYELEKA 756 ++Q+ +NILSNAI FT GG++ S + ILR V DTGVGM L Sbjct: 791 AMKLQQVLINILSNAIKFTGEGGKVTFSAMERRKIKSDAILRFVVNDTGVGMNEEFLPHI 850 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +PF Q GTGLGL ++K +VD GK + S GT Sbjct: 851 FEPFSQESTGTTALYGGTGLGLAISKNIVDMMDGKISVRSIKGIGT 896 >gi|218128652|ref|ZP_03457456.1| hypothetical protein BACEGG_00223 [Bacteroides eggerthii DSM 20697] gi|217989107|gb|EEC55422.1| hypothetical protein BACEGG_00223 [Bacteroides eggerthii DSM 20697] Length = 983 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 76/251 (30%), Positives = 132/251 (52%), Gaps = 10/251 (3%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I++ K+ + +L +AK AE+ KS FLA +SHEIRTPL AI+GFS ++ + Sbjct: 599 ITDRKRNEQELINAKNRAEESDRLKSAFLANMSHEIRTPLNAIVGFSSILATAEEEEEKS 658 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 EY N I+ + L+L +++D+LDI+KIE+ ++ ++ + L+ ++E S + Sbjct: 659 ----EYINIIENNNQLLLQLISDVLDIAKIEASSLDFNYSSLDLNVLMNELESTALMRIT 714 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + + ++ ++ + + QI +N+L+NAI FT G I E++ Sbjct: 715 SPDVCLEMIPDSDNCWVITERNRLSQIIINLLNNAIKFTQKGK--ITFGYKLQKEKIYFY 772 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG G+ + +K + F ++ N Q GTGLGL + K++VDA G+ + S Sbjct: 773 VTDTGCGIPAEKQDKIFERFIKLNNFAQ----GTGLGLSICKSIVDAMGGEIGVDSKVGN 828 Query: 801 GTLIEIIFPLY 811 G+ P + Sbjct: 829 GSTFWFTLPYH 839 >gi|67924970|ref|ZP_00518357.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] gi|67853183|gb|EAM48555.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] Length = 568 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 81/254 (31%), Positives = 130/254 (51%), Gaps = 14/254 (5%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L A AE+ S KSDFLA +HE+RTPL IIGF ++I + + E+ Sbjct: 306 QELEQATLAAEEASRLKSDFLASTTHELRTPLNGIIGFLKLILDGMADDAEEQQ--EFLE 363 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 +S +L+++ND+LDI+KIE+GKM+L V L E + A K + R+ Sbjct: 364 EAHKSALHLLNLINDILDIAKIEAGKMDLELGAVELAELFQAVDNFTLPQAQRKHLEFRS 423 Query: 689 SFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSG-----GQIIISTTHTSNEE----V 737 + + I+ + + + Q+ LN++SNAI FT G +I+ H N+E V Sbjct: 424 KLPSTLTPIVVYGNYQRLLQVMLNLVSNAIKFTHEGSIVVNAEIVKKKIHHQNQEFPGHV 483 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V DTG+G++ + K + F Q+ S GTGLGL +++ +V+A G+ +S Sbjct: 484 KVSVTDTGIGVSLDKQAKLFEKFVQVDGSHTKAYGGTGLGLAISQKLVEAMGGQVEFYSM 543 Query: 798 -PAKGTLIEIIFPL 810 G+ + PL Sbjct: 544 GEGLGSTVTFTVPL 557 >gi|304312202|ref|YP_003811800.1| sensor histidine kinase/response regulator [gamma proteobacterium HdN1] gi|301797935|emb|CBL46157.1| sensor histidine kinase/response regulator [gamma proteobacterium HdN1] Length = 913 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 121/229 (52%), Gaps = 7/229 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 +S+FLA +SHEIRTP+ ++G E+++N + + +E A RSG +L ++ND+ Sbjct: 536 RSEFLANMSHEIRTPMNGVLGMLELVENANLNDV-QKQQLEIAR---RSGQTLLALINDI 591 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR-S 703 LD+SKIESGK+ L P SL + +S+ L EK I + A ++P +A R Sbjct: 592 LDLSKIESGKLALESLPFSLQDFLSDLRELYGKQLREKNITCTLACAEDVPEWVAGDRIR 651 Query: 704 VKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFG 761 + Q+ N++SNA+ FT GG I ++ EE + +V DTG+G+ K F Sbjct: 652 LWQVLTNLVSNAVKFTKDGGVTISVNLLQEGQEERLSFQVTDTGIGIPKAAQAKIFDSFS 711 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 Q S + GTGLGL +A+ ++ G + S +G+ PL Sbjct: 712 QADGSTTRKYGGTGLGLTIAQNLLKLMGGAISVRSEEGEGSTFAFSMPL 760 >gi|229155590|ref|ZP_04283698.1| hypothetical protein bcere0010_17830 [Bacillus cereus ATCC 4342] gi|228627908|gb|EEK84627.1| hypothetical protein bcere0010_17830 [Bacillus cereus ATCC 4342] Length = 438 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 126/251 (50%), Gaps = 13/251 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E + + L+H + EK K++F+A +SHEIRTPLT I G+SE +K L Sbjct: 199 GELGELAHSLNHMSEKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKT--VDHLTEE 256 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + I + ++ +V +LLD S+++S NL+ + V L + + E I + A E Sbjct: 257 EIKQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEE 316 Query: 682 KRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K++ F I RI + D +KQI LNI+ NAI ++ G++ I T + + VI Sbjct: 317 KQM----QFIKTIERIELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKSEGQAVI- 371 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V+D G+G+ L + F QI N G GLGL + K MV+ + G I S Sbjct: 372 EVKDEGMGIAKEHLPYIEQSFYQINN----HATGAGLGLAIVKKMVELHGGTINIISKEG 427 Query: 800 KGTLIEIIFPL 810 GT I I PL Sbjct: 428 IGTTILIKLPL 438 >gi|183219846|ref|YP_001837842.1| putative two-component sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909977|ref|YP_001961532.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774653|gb|ABZ92954.1| Sensor and regulator protein of a two component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778268|gb|ABZ96566.1| Putative two-component sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 710 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 89/262 (33%), Positives = 129/262 (49%), Gaps = 14/262 (5%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L DISE K L AK+ AE + K FLA +SHEIRTPL+ +IG E++ Sbjct: 296 LVFRDISEEFAAKTYLEKAKENAEMANKAKDSFLATMSHEIRTPLSGLIGMLELLYQTSL 355 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 N N SGN +L I++D+LD+SKIE GK+ L +P S+ +SE + Sbjct: 356 ----NDDQKSLVNNALVSGNSLLRILSDILDLSKIEEGKLELSLQPTSISRLLSEVATTY 411 Query: 676 QLYANEKRILIRTSFANNI--PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 A+ K + + + I IL LR + QI N +SN I FT S G I IS Sbjct: 412 LQIASSKGLTLSYAVDEKITSAHILDSLR-LSQIINNFVSNGIKFT-SKGSIHISANLIK 469 Query: 734 N----EEVILRVRDTGVGMTNYELEKAMKPFGQ-IPNSQQIRGEGTGLGLPLAKAMVDAN 788 N +++ V DTG+G++ + K + + Q ++ ++ G GTGLGL + + + Sbjct: 470 NIDTLQQIQFSVTDTGIGLSKTDQSKLFQSYTQATADTARLYG-GTGLGLAICMRLSELM 528 Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810 G I S P G+ I L Sbjct: 529 DGNITIDSLPGSGSTFSITLSL 550 >gi|261251332|ref|ZP_05943906.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891] gi|260938205|gb|EEX94193.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891] Length = 639 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 142/260 (54%), Gaps = 13/260 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I++ + +L+ AK+ AE + KS+FLA +SHEIRTP+ I+G + +++ + Sbjct: 215 IAQLEINYQQLNSAKEKAEVANIKKSEFLANMSHEIRTPMNGIVGIATLLEET------S 268 Query: 621 PRYIEYANYID---RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 P I+ NY+D S + +LDI+ND+LD SKIE+G +L EP + + + + + + Sbjct: 269 PSDIQ-KNYLDILTSSSSTLLDIINDILDFSKIEAGHFSLSNEPFDICQLLHQQSNEYSV 327 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE 735 A +K+++ + + N+P I D +KQ+ N++ NA+ FT G ++ +++ H Sbjct: 328 RAAQKQLMFQCNIEPNLPNEIEGDQVRLKQVLNNLIGNALKFTQQGHIELKVNSLHIEQH 387 Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + + ++DTG+G+ L + F Q S + GTGLGL ++K +V+ G+ + Sbjct: 388 PHLYIEIKDTGIGIDKDNLSSIFEKFQQADGSTTRKYGGTGLGLAISKKIVEMMGGELKV 447 Query: 795 FSTPAKGTLIEIIFPLYDTS 814 S G+ P++ T+ Sbjct: 448 TSEVGLGSSFYFTIPMHITN 467 >gi|288942502|ref|YP_003444742.1| integral membrane sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897874|gb|ADC63710.1| integral membrane sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 806 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 5/241 (2%) Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 +H +++ E+ + +KS FLA VSHE+RTPL +I+ S+++ + G +P A I Sbjct: 383 AHTREL-ERSNRYKSQFLANVSHELRTPLNSILLLSKMLGAEGNGL--SPTQRRQAQVIH 439 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 +G + +++++LDIS+IESG++ L+ EPV L + + I L +K + + Sbjct: 440 EAGRDLRALIDNILDISRIESGRLGLNPEPVDLRPMLEDLIELFSPQLADKPVELSLRLE 499 Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMT 749 + P I D ++QI N L+NAI FT G +I + S +IL V DTG+G+ Sbjct: 500 PDAPEHIRTDRDKLRQILKNFLANAIKFTECGEVRIEVGGCAESERPLILSVIDTGIGIP 559 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + E + F Q S + R GTGLGL +++ + G+ + STP G+ ++ P Sbjct: 560 PDKQEIIFEAFQQADGSTRRRYGGTGLGLAISRELATLLGGRIEVESTPGIGSRFSLLLP 619 Query: 810 L 810 L Sbjct: 620 L 620 >gi|254475084|ref|ZP_05088470.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11] gi|214029327|gb|EEB70162.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11] Length = 843 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 124/239 (51%), Gaps = 6/239 (2%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + +L+ AK AEK KS+FLA +SHEIRTP+ I+G ++++ N + + Sbjct: 443 KRNTELTQAKLAAEKADQAKSEFLANMSHEIRTPMNGIVGMADILANTDL----SAEQQQ 498 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + + S + +L I+ND+LD+S++E+GKM + L + V + ++ EK + Sbjct: 499 CVDTVRESSSALLKIINDILDLSRLEAGKMEISPIDFDLRKCVDGVVDTLRPRMVEKGLT 558 Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRD 743 ++ ++P + D ++QI LN+L NA+ FT G + +S + + V+D Sbjct: 559 FTQTYTADLPELAHGDNGRLRQILLNLLGNAVKFTKEGSVGLHVSRDKSDPYRMCFEVKD 618 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TG+G++ + E + F Q + GTGLGL ++ + + G+ + S P KG Sbjct: 619 TGIGISEDQAEHIFERFSQADAATTRHFGGTGLGLTISNILAERMGGQITLASEPGKGA 677 >gi|222082058|ref|YP_002541423.1| two-component sensor histidine kinase/response regulator hybrid protein [Agrobacterium radiobacter K84] gi|221726737|gb|ACM29826.1| two-component sensor histidine kinase/response regulator hybrid protein [Agrobacterium radiobacter K84] Length = 949 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 84/233 (36%), Positives = 125/233 (53%), Gaps = 16/233 (6%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE+ ++ KS FLA +SHEIRTP+ AI+GFS ++ R +Y I + + + Sbjct: 193 AEQANAAKSLFLANMSHEIRTPMNAILGFSHLLGRTEL----TARQHDYVTKIRGASDRL 248 Query: 638 LDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 L ++ D+LD SKIE+GKM L F+P ++ E E L L A EK I I I Sbjct: 249 LSLLKDILDFSKIEAGKMALEKASFDPRAMIERTME---LSTLKAQEKGIAIGWQVDPAI 305 Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTT---HTSNEEVILR-VRDTGVGMT 749 P +L D + Q+ LN++SNAI FT S G++ + H + VI VRDTG+GM+ Sbjct: 306 PAMLRGDELRLSQVVLNLVSNAIKFT-SSGEVTLKLNLREHQDSRCVIEGVVRDTGLGMS 364 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + ++ + F Q +S R GTGLGL +++ +V G + S G+ Sbjct: 365 SGQVARLFDSFTQADSSTTRRFGGTGLGLAISRQLVALMDGGISVESKEGHGS 417 >gi|254252656|ref|ZP_04945974.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158] gi|124895265|gb|EAY69145.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158] Length = 1265 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 79/262 (30%), Positives = 130/262 (49%), Gaps = 4/262 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI--KNQ 613 L DI + K A+ AE+ ++ K +FLA VSHE+R PL I ++ V+ ++ Sbjct: 865 LAFQDIHQLKSALGNAQSAQLDAERANTAKDNFLALVSHELRAPLNVISNWAAVLMAASE 924 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 R P I R L ++++DLLD+S+I SG+ +L +PV A+ + Sbjct: 925 RGVPTDEQMSQRAVTTILRHCQLQAELIDDLLDVSRISSGRFSLDAKPVDFAAAIRTVVE 984 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + A +K I++ TS + D R ++Q+A N++ NA+ FTP GG++ ++ T Sbjct: 985 SHRPIAAKKAIVLATSDLQGQAIVSGDARRLQQVASNLIGNALKFTPQGGRVEVALTRL- 1043 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + L V D G+G+ L + F Q S+ + G GLGL + K +V A+ G Sbjct: 1044 GALIELSVTDNGIGVKPELLPRLFDRFMQSDTSRTRQYGGLGLGLSIVKHLVTAHGGTVT 1103 Query: 794 IFS-TPAKGTLIEIIFPLYDTS 814 S +GT + + PL T+ Sbjct: 1104 ASSEGEGRGTRLTVRIPLLQTA 1125 >gi|94264852|ref|ZP_01288627.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93454673|gb|EAT04938.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 399 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/253 (29%), Positives = 127/253 (50%), Gaps = 17/253 (6%) Query: 563 EWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 E ++ +L A AE+ + KS+FLA +SHEIRTP+ +IG + ++ ++ Sbjct: 137 ELRESNRRLEEAAVQAEELARQAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLSEDL 196 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + Y I SG +L+++N +LD SKIE+G++ L + P S E V E + L+ Sbjct: 197 ----TAEQLSYVKVIKTSGEALLELINQILDFSKIEAGRLELDYRPFSPRELVQEVVLLL 252 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-----IST 729 Q A + + + + IP I D ++Q+ LN++ NAI FT GG I + Sbjct: 253 QPQAAAQNLALTCEISPGIPAIAEGDPVRLRQVLLNLVGNAIKFTEVGGVAIELSPAPAD 312 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 V+D+G+G+ +++ + F Q+ S + GTGLGL + + +V+ Sbjct: 313 PAAPEFSCYFAVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGLGLAICRRLVELMG 372 Query: 790 GKFYIFSTPAKGT 802 G+ + S KG+ Sbjct: 373 GEVGVESEVGKGS 385 >gi|296085009|emb|CBI28424.3| unnamed protein product [Vitis vinifera] Length = 1203 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 147/306 (48%), Gaps = 32/306 (10%) Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 S+ +++ L + ++ I++ + + ++ K AE KS FLA VSHEIRTP Sbjct: 597 SVGVLVITLLVGHIFHAAINRIAKVEGDYRQMMELKVRAEAADVAKSQFLATVSHEIRTP 656 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 + ++G +++ + + +YA SG ++ ++N++LD +KIESG++ L Sbjct: 657 MNGVLGMLKMLMDSGL----DANQQDYAETAHASGKDLISLINEVLDQAKIESGRLELEA 712 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718 P L A+ +SL ++EK I + ++ +P ++ D +QI N++ N+I F Sbjct: 713 VPFDLRAALDNVLSLFSGKSHEKGIELAVYISDQVPEFVIGDPGRFRQIITNLVGNSIKF 772 Query: 719 TPSGGQIIISTTHTSNE------------------EVILRVRDTGVGMTNYELEKAMKPF 760 T G I +S H ++E ++++ V DTGVG+ + + PF Sbjct: 773 THDKGHIFVS-VHLADEVKFKKLSCTDSMEETSIIKLLVTVEDTGVGIPSEAQSRIFMPF 831 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE--IIFPLYDTS---- 814 Q +S GTG+GL ++K +VD G+ S P G+ + F +TS Sbjct: 832 MQADSSTSRTYGGTGIGLSISKRLVDLMGGEIGFESEPGTGSTFSFTVAFTKGETSLLDT 891 Query: 815 --HPHD 818 PHD Sbjct: 892 KQQPHD 897 >gi|260170861|ref|ZP_05757273.1| two-component system sensor histidine kinase/response regulator, hybrid ('one component system') [Bacteroides sp. D2] Length = 1384 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 133/254 (52%), Gaps = 13/254 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 KQ+ + + K+ E + K F ++HE RTP+T IIG E + NP+ I Sbjct: 848 KQKAQLIRMSHKVQEL-TLDKISFFTNITHEFRTPITLIIGPIERALKLSY----NPQVI 902 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E ++++R+ +L +VN L+D K+ESGK+ + + + + I+ +++A E+ I Sbjct: 903 EQLHFVERNSKYLLSLVNQLMDFRKVESGKLEIVKTRGNFLKFIDSLITPFEVFAGERNI 962 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-----IISTTHTSNEEVIL 739 +++ + P IL D +++++ N+LSNAI FTP+GG + +S+ E + + Sbjct: 963 VLKRYYRMETPEILYDEEAMRKVVTNLLSNAIKFTPNGGTVSLYISSLSSGEGGKESLYI 1022 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQ--IRGE-GTGLGLPLAKAMVDANMGKFYIFS 796 V DTG G+ +L + F Q N + + G+ GTG+GL L K +V + G+ + + Sbjct: 1023 CVCDTGPGIPEEDLNRIFNRFYQSQNQVKYPVYGQAGTGIGLYLCKRIVQMHGGEIKVRN 1082 Query: 797 TPAKGTLIEIIFPL 810 G ++ PL Sbjct: 1083 NRLSGCSFRLLLPL 1096 >gi|331700135|ref|YP_004336374.1| multi-sensor hybrid histidine kinase [Pseudonocardia dioxanivorans CB1190] gi|326954824|gb|AEA28521.1| multi-sensor hybrid histidine kinase [Pseudonocardia dioxanivorans CB1190] Length = 1025 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 128/239 (53%), Gaps = 11/239 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTP+ A+IG +E++ +Y I +S + +L ++ND+ Sbjct: 378 KSAFLANMSHEIRTPMNAVIGMTELLSATSL----TEEQQDYTGVIAQSADGLLTVINDV 433 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP--RILADLR 702 LD SKIE+GK+ L + E + +A+ L+ A K + + + A+ +P + D Sbjct: 434 LDFSKIEAGKLELDRDAFDPREVIEDALGLLAPRAAAKGLEL-VAAADGVPPAAVFGDPG 492 Query: 703 SVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKP 759 ++QI +N++ NA+ FT G ++ +S ++ LR V DTG+G+ ++ + + Sbjct: 493 RLRQILVNLVGNAVKFTERGEVVVTLSAVRADDDRWRLRIAVADTGIGIPAEQIPRLFRS 552 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 F Q+ S R GTGLGL +++ + + G + S P +G++ + + + + P D Sbjct: 553 FSQVDESATRRHGGTGLGLVISRRLAELMGGTVEVASEPGRGSVFTVTL-VGEAASPPD 610 >gi|315919193|ref|ZP_07915433.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] gi|313693068|gb|EFS29903.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] Length = 1409 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 133/254 (52%), Gaps = 13/254 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 KQ+ + + K+ E + K F ++HE RTP+T IIG E + NP+ I Sbjct: 873 KQKAQLIRMSHKVQEL-TLDKISFFTNITHEFRTPITLIIGPIERALKLSY----NPQVI 927 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E ++++R+ +L +VN L+D K+ESGK+ + + + + I+ +++A E+ I Sbjct: 928 EQLHFVERNSKYLLSLVNQLMDFRKVESGKLEIVKTRGNFLKFIDSLITPFEVFAGERNI 987 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-----IISTTHTSNEEVIL 739 +++ + P IL D +++++ N+LSNAI FTP+GG + +S+ E + + Sbjct: 988 VLKRYYRMETPEILYDEEAMRKVVTNLLSNAIKFTPNGGTVSLYISSLSSGEGGKESLYI 1047 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQ--IRGE-GTGLGLPLAKAMVDANMGKFYIFS 796 V DTG G+ +L + F Q N + + G+ GTG+GL L K +V + G+ + + Sbjct: 1048 CVCDTGPGIPEEDLNRIFNRFYQSQNQVKYPVYGQAGTGIGLYLCKRIVQMHGGEIKVRN 1107 Query: 797 TPAKGTLIEIIFPL 810 G ++ PL Sbjct: 1108 NRLSGCSFRLLLPL 1121 >gi|221126281|ref|XP_002164625.1| PREDICTED: similar to histidine kinase [Hydra magnipapillata] Length = 547 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 79/250 (31%), Positives = 127/250 (50%), Gaps = 8/250 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DI+ + + + HA + AE+ + KS FLA +SHEIRTP+ AI+G S +++ Sbjct: 23 VLEDITPSYEARQAIEHAHQQAEEANRAKSSFLANMSHEIRTPMNAIMGMSYLVQKTEL- 81 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 N R Y N I S +L I+ND+LD SKIE+GK+ + LD+ + LV Sbjct: 82 ---NERQRGYLNKIQSSSQHLLGIINDILDYSKIEAGKLGIEHIEFELDKVLDNLAGLVG 138 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 A K + + +P +++ D + QI +N +NA+ FT G I + S Sbjct: 139 DKAASKGLELVFDVDKQVPLQLVGDPLRLGQILVNYANNAVKFTERGEIDIRVRVQEEST 198 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 V+L VRDTG+G++ + + F Q S + GTGLGL +++ + G+ Sbjct: 199 SHVVLHFAVRDTGIGISEEQKSVLFQSFQQADASTTRKFGGTGLGLAISRQLAQMMEGEV 258 Query: 793 YIFSTPAKGT 802 + ST +G+ Sbjct: 259 GVDSTFGQGS 268 >gi|149190330|ref|ZP_01868603.1| aerobic respiration control sensor protein ArcB [Vibrio shilonii AK1] gi|148835819|gb|EDL52783.1| aerobic respiration control sensor protein ArcB [Vibrio shilonii AK1] Length = 783 Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 97/363 (26%), Positives = 178/363 (49%), Gaps = 33/363 (9%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-KPFTVFLEQNTPSVM--- 509 L S ++A+ D I N EG+ NRA+ +L G ++++ P+ V+ E+ V+ Sbjct: 157 LRSFIDASPDLIYYRNAEGVFSGCNRAMEELTGRKEKELVGLTPWDVYSEEIAKQVVETD 216 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM------HDISE 563 + + + +L Q LE E ++K+PF S + DI+E Sbjct: 217 HKVMGDNQALTYEQWLEYPDGKKCFYE--------LRKVPFYSKDGKHLGLVGFGRDITE 268 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K+ + L EK S K+ F++ +SHE+RTPL I+G S ++ + N Sbjct: 269 RKRHQESL-------EKASRDKTTFISTISHELRTPLNGIVGLSRMLLDSHL----NTEQ 317 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 ++ I+ S + I ND++D+ K + K+ L EP++ ++ V+E S+ L A +K Sbjct: 318 RKHMQTINVSAITLGHIFNDIIDMDKFDRRKLELFPEPLNFEDFVTELESISALMAEQKG 377 Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSN-EEVILR 740 + ++P ++ D ++Q+ N++SNA+ FT GG ++ IS N +I+ Sbjct: 378 LRFDLERLTDLPEGVVVDATRLRQVIWNLVSNAMKFTKQGGVVMTISADIEDNYAHIIIE 437 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQ-IRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ +EL+K + Q+ + + + GTG+GL ++K ++ G + S Sbjct: 438 VEDTGIGIPQHELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLIKMMDGDITVDSEEG 497 Query: 800 KGT 802 G+ Sbjct: 498 FGS 500 >gi|253578619|ref|ZP_04855891.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850937|gb|EES78895.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 686 Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 84/286 (29%), Positives = 140/286 (48%), Gaps = 15/286 (5%) Query: 544 IIKKLPFSSCYSLTMHDIS----EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 II FS ++ + IS KQ +L A ++A+ + K+ FL +SH+IRTP Sbjct: 265 IIASYIFSLLIAMVFYQISSKKHREKQYAAELEKAAELAKSANEAKTRFLFNMSHDIRTP 324 Query: 600 LTAIIGFSEVI-KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 + AIIGFS ++ KN + + EY I SGNL++ I+N +L+I++IESG L Sbjct: 325 MNAIIGFSGLLEKNLQ----NEEKAKEYLGKICSSGNLLMTIINQILEIARIESGTTALQ 380 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 + ++ ++ + +K + IL D +++I LNI+SNAI + Sbjct: 381 LKAEDINTLFHTVNTVFEEDVRKKNLQYSVDLDVYHTFILCDRVKLQEIMLNIISNAIKY 440 Query: 719 TPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 T G + + +E+ +I DTG+GM+ L + F + + + + G Sbjct: 441 TSDGHGVHVKIYEKDSEDPRKARLIFTCEDTGIGMSEEYLPHIFEEFSREHTTTENKVAG 500 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 TGLGLP+ K+M++ G + ST GT + +DT+ D Sbjct: 501 TGLGLPIVKSMIELMGGSIRVESTQGAGTKFTVDIS-FDTASEEDV 545 >gi|114568634|ref|YP_755314.1| PAS/PAC sensor signal transduction histidine kinase [Maricaulis maris MCS10] gi|114339096|gb|ABI64376.1| PAS/PAC sensor signal transduction histidine kinase [Maricaulis maris MCS10] Length = 829 Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 88/358 (24%), Positives = 169/358 (47%), Gaps = 13/358 (3%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM--NHYL 513 + L+ + +A+ G + N A L+G+ E++ +P + + ++ + Sbjct: 451 ATLDKLHEAVAVFGANGRLQLNNSAFEDLWGFDAEELDGQPDFDAVSETCAALFTDDRVW 510 Query: 514 TEILS--LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 T+I + D K G + L + + LP + + D+++ ++ + L Sbjct: 511 TDIKARVTDPSPQARKQVTGEMRRLDGRVLTYLTRPLPDGATL-ICWDDVTDSRRIEEAL 569 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 + E K++F+ VS+++RTPLT I G+++++ G L + R E + I Sbjct: 570 RERAEALETSERIKTEFVEHVSYQLRTPLTTIGGYADMLAQGFAGELSD-RQKEPMSAIQ 628 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 + + +++D+LD++ I++G++ L V L + EA LV A+ I + Sbjct: 629 SAAAHLAKLIDDILDVAAIDAGQLELELGDVDLGDVAREAADLVAARADHHAIKLDVDIE 688 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 + + + AD +KQ+++N+LSNAI +GG + I + E++ L V+D G G+ Sbjct: 689 DGLGLLRADRNRLKQVSMNLLSNAIRHVATGGAVTIG-ARRNGEDITLWVKDDGEGIAP- 746 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 EK F + + RG G GLGL L K + + + G + S P +GTL+ P Sbjct: 747 --EKQASVFDRFARGE--RG-GAGLGLSLVKEIAELHGGWVELQSEPERGTLVSCHLP 799 >gi|310824337|ref|YP_003956695.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309397409|gb|ADO74868.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 1420 Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 79/264 (29%), Positives = 137/264 (51%), Gaps = 14/264 (5%) Query: 556 LTMHDISEWKQ---EKNKL----SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 L + DI+E KQ E+ +L AK+ AE+ + K FLA +SHE+RTPL+ ++ ++ Sbjct: 992 LAIEDITERKQRELERAELLAHAQQAKEEAERANRAKDQFLATLSHELRTPLSTMLMQAQ 1051 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++ R G + + + + I+RS + + +++DLLD+S+I +GK+ + F+ V L V Sbjct: 1052 LL---RRGTMDDAKIKRASEAIERSTKMQVQLIDDLLDVSRIVTGKLRMEFQTVHLPGVV 1108 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 A+ V A K IL T+ ++ + D ++QI N+L+NAI F+ G ++ + Sbjct: 1109 QAALESVSAQAERKSILFETTLDESLGPVSGDPTRLQQIVWNLLANAIKFSAEGQRVSVV 1168 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 L+V D G G+ L++ F Q +S G GLGL + + +V+ + Sbjct: 1169 LERMEG-SARLQVSDRGAGIEAEALQRIFDRFMQEDSSSTRVFGGLGLGLAIVRHLVELH 1227 Query: 789 MGKFYIFSTPAK--GTLIEIIFPL 810 G +P K G + +I PL Sbjct: 1228 GGTVQA-ESPGKGQGAIFTVILPL 1250 >gi|288957521|ref|YP_003447862.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288909829|dbj|BAI71318.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 911 Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 78/264 (29%), Positives = 133/264 (50%), Gaps = 17/264 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + +L +++ AE+ + KS FLA +SHEIRTP+ ++G +++ + + Sbjct: 183 ERTRELRESREQAEEATKAKSAFLATMSHEIRTPMNGVLGMLGLLERTEL----DDHQRD 238 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + S N +L I++D+LD SKIE+GKM+L +S+ V + A K + Sbjct: 239 TVGTMRESANALLRIIDDILDFSKIEAGKMDLERVALSVPSLVEGVAETLAPAAGAKGLT 298 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--------- 735 + T IP+ +L D ++QI N+ NAI FT SG I+ + + + Sbjct: 299 LLTYVDPAIPQALLGDPVRLRQILFNLAGNAIKFTESGRVILRAELEPAADGAGPGTGTG 358 Query: 736 -EVILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 E ILR+ DTG+G+T ++ +PF Q +S R GTGLGL +++ + G+ Sbjct: 359 TEPILRIAVCDTGIGITETTRQRLFQPFTQAESSTTRRFGGTGLGLSISRRLAALMGGEI 418 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHP 816 + STP G++ + P+ + P Sbjct: 419 GVESTPGAGSIFWLRLPMAHGALP 442 >gi|260173264|ref|ZP_05759676.1| two-component sensor histidine kinase [Bacteroides sp. D2] gi|315921537|ref|ZP_07917777.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695412|gb|EFS32247.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 406 Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 83/282 (29%), Positives = 141/282 (50%), Gaps = 41/282 (14%) Query: 548 LPFSSCYSLTM-HDISE-WK------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 P Y L M DIS+ W+ Q++ +L A+ AE+ KS FLA +SHEIRTP Sbjct: 144 FPLDKEYLLCMCRDISQQWEAEQTNAQQQKELKAARIKAEESDRLKSAFLANMSHEIRTP 203 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 L AI+GFS++I N +Y+ I+R+ ++L++ ND+LD++ +E+ + + Sbjct: 204 LNAIVGFSKLITYATSAEEKN----QYSEIIERNSEMLLNLFNDILDLASLEADSLKFNI 259 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS----------VKQIAL 709 P+ L + + L Q + ++ + N + IL D+ + + QI Sbjct: 260 RPIKL---IDICLQLEQQFCHKTQ--------NGVKLILDDVDADMYTSGDWNRIIQIIS 308 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 N+LSNA FTP G I + E+ + V+D+G+G+ + + FG++ + Q Sbjct: 309 NLLSNATKFTPKGE---IHFGYREKEDFVEFYVKDSGIGIPAARIATIFRRFGKVNDFVQ 365 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L + +V+ G+ ++ S +G+ PL Sbjct: 366 ----GTGLGLTLCRMLVEKMGGRIWLRSQEGQGSRFYFTLPL 403 >gi|268591889|ref|ZP_06126110.1| virulence sensor protein BvgS [Providencia rettgeri DSM 1131] gi|291312863|gb|EFE53316.1| virulence sensor protein BvgS [Providencia rettgeri DSM 1131] Length = 1205 Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 89/261 (34%), Positives = 140/261 (53%), Gaps = 15/261 (5%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI---KNQ 613 + DI+E +Q +LS A++ AE S KS+FLA +SHEIRT ++AIIG E+ KNQ Sbjct: 681 SWQDITEHEQLLIELSSARQRAEHASQTKSNFLAIMSHEIRTHISAIIGLLELAATNKNQ 740 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + + I Y + + G ++ D+LD++KIESGK+ L E V +E + + Sbjct: 741 Q-DDITESIQIPYESALSLMG-----LIGDILDMAKIESGKLELVPEWVKSNELATPVVR 794 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH 731 L + A +K I + P I D+ ++Q+ N+L+NAI FT G ++II+ Sbjct: 795 LFEGLAKQKGISLHYHLNAIHPDEIYIDVFRLRQVISNLLNNAIKFTSEGTIEVIINYLP 854 Query: 732 TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 ++EE ILR + DTG+G+ E P+ Q +S + +GTGLGL + K ++ Sbjct: 855 QNHEENILRIIISDTGMGIEENRQELIFSPYTQAESSS--KHKGTGLGLAICKQLISMMN 912 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G ++S GT I P+ Sbjct: 913 GTITLYSQLGHGTQFLIDIPV 933 >gi|154492920|ref|ZP_02032546.1| hypothetical protein PARMER_02562 [Parabacteroides merdae ATCC 43184] gi|154087225|gb|EDN86270.1| hypothetical protein PARMER_02562 [Parabacteroides merdae ATCC 43184] Length = 827 Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 78/257 (30%), Positives = 132/257 (51%), Gaps = 8/257 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DIS + + +L AK+ AE + + +SH+IR PL++IIG+ E++ +R P Sbjct: 313 RDISRSQYYRQQLEKAKQYAEDLLHSREKLMLTISHDIRAPLSSIIGYIELLLRRR--PD 370 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 RY Y + S N +L +VN LLD ++ESG+M + P S+ +E + Sbjct: 371 ERQRY--YLENMTGSANHILSLVNGLLDFHRLESGQMEIQNVPFSVRTLFNEIYGSFRPI 428 Query: 679 ANEKRI-LIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A K + + + RI + D ++QI N+LSNA+ FT G ++I N + Sbjct: 429 AEAKGLAFVLNMKEEGMDRIYSGDPIRLRQIVSNLLSNAVKFTHEGRIVLIVKLSILNSQ 488 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + V D+GVG+ E EK F ++ ++ + EG GLGL + + +++ G + S Sbjct: 489 LTITVSDSGVGIPEEEQEKIFGEFARLSGTE--KEEGFGLGLSITRKLIELMGGTLSLKS 546 Query: 797 TPAKGTLIEIIFPLYDT 813 P KG+ I+ PL ++ Sbjct: 547 VPGKGSDFTIVLPLRES 563 >gi|16330151|ref|NP_440879.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803] gi|1652639|dbj|BAA17559.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803] Length = 998 Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 80/259 (30%), Positives = 133/259 (51%), Gaps = 13/259 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I E ++ + KL AK+ AE + KS+FLA +SHEIRTP+ AI+GF +++ + L Sbjct: 575 EIEERQRIEIKLREAKESAELANRVKSEFLANISHEIRTPMNAILGFCDLLLQK---DLS 631 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + +Y N I S ++L +++D+LDISKIE+GK+ +H EPV L + E + A Sbjct: 632 LSQTKKYLNAIGSSSKILLALIDDILDISKIEAGKLVIHLEPVDLRVIIREIKQIFDYKA 691 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST--------T 730 K +L+ + + I D ++QI N++ NA+ FT GQ+ I + Sbjct: 692 ESKSLLLTIQIDETLNQAIYFDAVRLRQILFNLVGNALKFTEE-GQVFIYIGVEGIQVRS 750 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + + V DTG+G+ + K F Q + GTGLGL + + + G Sbjct: 751 QGTYISLAIEVTDTGIGIAPEDQAKIFDVFTQSQGQSTRKYGGTGLGLTITRRLTALLGG 810 Query: 791 KFYIFSTPAKGTLIEIIFP 809 + + S +G+ + FP Sbjct: 811 EISLSSRLGEGSTFILHFP 829 >gi|323691916|ref|ZP_08106168.1| hypothetical protein HMPREF9475_01031 [Clostridium symbiosum WAL-14673] gi|323504032|gb|EGB19842.1| hypothetical protein HMPREF9475_01031 [Clostridium symbiosum WAL-14673] Length = 710 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 83/279 (29%), Positives = 137/279 (49%), Gaps = 10/279 (3%) Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 +R +I + F+ M + W K K+ + +++ KSDF+ +VSH+IRTP Sbjct: 292 GMRNVITMILFTLLTVAAMALV--WISYYVKKGQQIKLEQAKAALKSDFMNKVSHDIRTP 349 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 LTA+IG ++++ + P E A +SG ++ I+ND+LD+S+IE GK+ L Sbjct: 350 LTAVIGLNDLLLHNADKP---DIVAECAQKAKKSGEYLVSIINDVLDLSRIECGKLRLSQ 406 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHF 718 + + E + + L A EK + R N R + D +KQ +N++SNAI F Sbjct: 407 KAFDMKELLETVVQLEVYPAAEKALNFRLDCPENFHRGFSGDEVRIKQCLINLVSNAIKF 466 Query: 719 TPSGGQIIIS----TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 TP G + ++ T + V DTG+GM+ +++ PF Q +S G+ Sbjct: 467 TPEQGTVTLTYREQTESGGYTKAYFAVEDTGIGMSEAFMKQMFHPFEQEQSSLTSSHVGS 526 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 GLGL + ++V G + S +G+ I PL T Sbjct: 527 GLGLAIVHSLVTLMNGTIHAESKLNQGSRFIIELPLERT 565 >gi|270294120|ref|ZP_06200322.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D20] gi|270275587|gb|EFA21447.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D20] Length = 914 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 86/260 (33%), Positives = 126/260 (48%), Gaps = 21/260 (8%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQR 614 DI+E +Q K +L AK+ AE KS FLA +SHEIRTPL AI+GFS +I + +R Sbjct: 505 DITEMEQMKRELLVAKEKAETSDRLKSAFLANMSHEIRTPLNAIVGFSRIIAESTDEEER 564 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 G Y ++ + +L ++N++LD+SKIESG + PV L E Sbjct: 565 LG---------YYEIVESNNERLLQLINEILDLSKIESGIVEFTITPVRLHPLCKEIHDA 615 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 E LI NI I D + Q+ N++ NA FT +G I Sbjct: 616 HIFRCPEGVELIYEPSDENIV-IDGDKNRIFQVISNLIGNAFKFTTTGH--ISYGYRREG 672 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + V V DTG+G+ ++++ + F ++ N Q GTGLGL + K +++ G + Sbjct: 673 KYVAFHVTDTGMGIAPDKVDRVFERFVKVNNFAQ----GTGLGLSICKTIIERLGGNISV 728 Query: 795 FSTPAKGTLIEIIFPLYDTS 814 S KGT + PL TS Sbjct: 729 TSEVGKGTTFTFVLPLESTS 748 >gi|78486263|ref|YP_392188.1| multi-sensor hybrid histidine kinase [Thiomicrospira crunogena XCL-2] gi|78364549|gb|ABB42514.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena XCL-2] Length = 901 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 112/401 (27%), Positives = 186/401 (46%), Gaps = 62/401 (15%) Query: 441 RINKRKMEI-EVMQLCSILEATSDGIAIINRE---GIILSTNRAVSKLFGYPVEDILRKP 496 R N+ EI E++ + + D I++R G IL N K+ GY E+++ +P Sbjct: 358 RFNRLLSEINELIYSINYQQKAIDQTLIVSRTDPYGTILYVNDNFCKISGYSKEELVGQP 417 Query: 497 FTVFLEQNTP-SVMNHYLTEILS--------LDLRQTLEKITL-----------GSTKEE 536 ++ + P S + T I S +LR+ E + G+ KE Sbjct: 418 HSIVRHPDMPKSTFENIWTTIQSKKIWSGEITNLRKNGETYYVMSYIMPLLDKDGNIKE- 476 Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK-------IAEKESSHKSDFL 589 LS+R DI+E + L AK+ +AEK + KS+FL Sbjct: 477 -FLSIR----------------EDITERVHLEKSLEKAKQDAEERRLVAEKSNQAKSEFL 519 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 + +SHE+RTPL +IIGF+++++ L + + N I SG +L ++NDLL+++K Sbjct: 520 SSMSHELRTPLNSIIGFAQLLE---LSDLSEKQKKQLKN-ISTSGEHLLHLINDLLELAK 575 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIA 708 IESG ++L E L V E + +V A + I I S +N ++AD +KQ+ Sbjct: 576 IESGNISLSVERTELKPIVEECLQMVHTAAEKHHIKITISEKSNCNYFVIADHLRLKQVL 635 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEE-------VILRVRDTGVGMTNYELEKAMKPFG 761 +N L+NAI + G I + EE + + + DTG G+ +K +PF Sbjct: 636 VNFLTNAIKYNRENGSITLFAEKKPAEESPHKNGCIRISIEDTGYGIAEKYQKKLFQPFN 695 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 ++ + EGTG+GL + K +++ G+ ST G+ Sbjct: 696 RLGHETSTI-EGTGIGLAITKDLIEKMDGQVGFESTEGVGS 735 >gi|78224191|ref|YP_385938.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens GS-15] gi|78195446|gb|ABB33213.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens GS-15] Length = 807 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 129/233 (55%), Gaps = 16/233 (6%) Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHEIRTP+ AIIG+++++K R G L P+ +Y N I+ SG +L ++ND+L++ Sbjct: 338 FLASMSHEIRTPMNAIIGYAQLLK--REGNLA-PQQGQYLNVINNSGEHLLKLINDILEM 394 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQ 706 SKIESG +NL P + + + SL A +K++ +P +L AD V+Q Sbjct: 395 SKIESGTVNLTPVPFNFHNLLHDVESLFADRARQKKLRFDVRLQGEVPVVLDADEMKVRQ 454 Query: 707 IALNILSNAIHFTPSG--GQIIISTTHTSNEE--------VILRVRDTGVGMTNYELEKA 756 + +N++ NA+ FT G + S+T + ++E + + V D+G+G++ E ++ Sbjct: 455 VLINMIGNALKFTDEGTIAVTVSSSTDSPDKERDTYGETAITVDVEDSGIGISAEEADQV 514 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK-FYIFSTPAKGTLIEIIF 808 F Q + ++ R GTGLG+P+++ G F + P G+ +F Sbjct: 515 FALFEQTESGRR-RIGGTGLGMPISRQFARLMGGDLFLVRGEPGIGSAFRFVF 566 >gi|84623384|ref|YP_450756.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84367324|dbj|BAE68482.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 1216 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 126/242 (52%), Gaps = 8/242 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S K+ FLA + HE+RTP+T ++G SE++ + Y I R Sbjct: 834 HKQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTSL----DITQRSYTESIRR 889 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--RILIRTSF 690 +G +L +VND LD+++IESG++ L +P S+ + V+E +L+ A E+ R + Sbjct: 890 AGAHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEALMAPLAQERGLRFSLEIGL 949 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 +I D ++QI LN+L+NAI FT G + TT S + + V DTG G+ Sbjct: 950 LGDIT-ASGDSTRIRQILLNLLNNAIKFTERGVVGLKLTTLGSYQGLRFEVADTGPGINA 1008 Query: 751 YELEKAMKPFGQIPNSQ-QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + + F Q ++ R G+GLGL + + + A G + S GT + P Sbjct: 1009 EQKARLFQRFEQGDGARTNSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTRFVVDLP 1068 Query: 810 LY 811 L+ Sbjct: 1069 LH 1070 >gi|312967521|ref|ZP_07781736.1| signal transduction histidine-protein kinase atoS [Escherichia coli 2362-75] gi|312287718|gb|EFR15623.1| signal transduction histidine-protein kinase atoS [Escherichia coli 2362-75] Length = 605 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 188/398 (47%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 226 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 285 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 286 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 338 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 339 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 393 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q P+ + EY + + + + + ++ LL+ S+ Sbjct: 394 AHEVRNPLTAIRGYVQILRQQTRDPI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 449 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 450 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL 505 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 506 INAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLSLQKKIFDPFF------TTKAS 559 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 560 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 597 >gi|197104629|ref|YP_002130006.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] gi|196478049|gb|ACG77577.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] Length = 802 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 122/255 (47%), Gaps = 7/255 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M +++ K ++ L AK+ AE + KS FLA +SHEIRTPL ++G ++ + Sbjct: 397 AMQNVTVRKAQERALVRAKEEAEAANRAKSAFLATMSHEIRTPLNGVLGMAQAMAMDELS 456 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P R + I +SG +L I+ND+LD+SKIE+GK++L ++E V + Sbjct: 457 PAQRERL----DVIRQSGESLLAILNDVLDLSKIEAGKLDLEEAEFDVEELVRTVHATFA 512 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A K + + A N + D V+QI N++SN + FT G + + Sbjct: 513 AVAEAKGLGFEIAVARNARGLYRGDPIRVRQILWNLVSNGLKFTDRGA--VEVRVRRAQG 570 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + VRDTG+G+ +L + F Q S R GTGLGL + + + G+ Sbjct: 571 LLAFEVRDTGIGIAPEQLANLFRKFEQADASTTRRFGGTGLGLAICRELAGLMGGEIAAE 630 Query: 796 STPAKGTLIEIIFPL 810 S +G + PL Sbjct: 631 SARGQGARFTVSLPL 645 >gi|301310672|ref|ZP_07216611.1| two-component system histidine kinase [Bacteroides sp. 20_3] gi|300832246|gb|EFK62877.1| two-component system histidine kinase [Bacteroides sp. 20_3] Length = 736 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 131/251 (52%), Gaps = 9/251 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I K +N L A++ AE+ K FLA +SHEIRTPL AI+GFS+++ + PL Sbjct: 483 NIQRIKDTENSLIAARRKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLLNSDM--PLE 540 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 E+ + I ++ +L+L ++ND+LD+S+IESG M+ +E + L + + + QL Sbjct: 541 PEEKAEFIDLITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMM 600 Query: 680 NEK-RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 E + IR I R +D + Q+ N ++NA+ FT G I + ++ Sbjct: 601 PEGVELKIRVPHEPLIIR--SDHFRLTQVCTNFINNAVKFTAKGYIEIGYELSADGKSIL 658 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V+DTG G+ + + EK + F ++ Q GTGLGL + +++V G + S Sbjct: 659 ISVKDTGKGIPDDKKEKVFERFQKLDEFAQ----GTGLGLAICQSIVHTFHGSISLESEV 714 Query: 799 AKGTLIEIIFP 809 G+ I P Sbjct: 715 GVGSKFTISLP 725 >gi|182413537|ref|YP_001818603.1| histidine kinase [Opitutus terrae PB90-1] gi|177840751|gb|ACB75003.1| histidine kinase [Opitutus terrae PB90-1] Length = 1257 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 118/231 (51%), Gaps = 8/231 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHE+RTPL ++G+++V+ P P E I +SG +L ++N++ Sbjct: 808 KSTFLAHMSHELRTPLNGVLGYAQVLARD---PAQPPAARERLQIIIQSGEHLLALINEV 864 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRS 703 LD++++E+GKM L +L V L++ + + A +PR++ D + Sbjct: 865 LDLARVEAGKMQLRPTTCALPRLVESVADLMRAPCEAAGLGFACAVAAGLPRLVRTDEQK 924 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 ++Q+ LN++ NA+ F G + ++ + V V DTGVG+ L +PF Sbjct: 925 LRQVLLNLVGNAVKFARH-GAVRLAVAPLPDGRVRFEVSDTGVGIAPERLATLFQPFA-- 981 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 S + GTGLGL L+++MV+ G+ S P +G PL + + Sbjct: 982 -TSAEHGARGTGLGLALSRSMVELLGGRLLAESRPGEGARFWFDLPLPEAA 1031 >gi|313157976|gb|EFR57382.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Alistipes sp. HGB5] Length = 474 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 127/258 (49%), Gaps = 11/258 (4%) Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 C S+ H ISE + L A+ A + KS FLA +SHEIRTPL AIIGF+ ++ + Sbjct: 209 CQSIHDHKISE-----DGLRAARDKARESDRLKSAFLANMSHEIRTPLNAIIGFANLLTS 263 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + P EY+ I +G+ +L +++D+LD+SKIES M HF SL +++ Sbjct: 264 EDI-PFSEAEKQEYSRLITSNGDQLLRLISDILDLSKIESNTMEFHFGEHSLHALLTDIY 322 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +L E + +R I+ D +KQ+ N+++NA FT G + Sbjct: 323 QAQRLCMPEG-VRLRLDMPQADTPIVTDASRLKQVVNNLINNAAKFTDDGSITFGFRSPQ 381 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 E+V L V DTG G+ L++ + F + + + G GLGL + + + + G Sbjct: 382 GCEQVELFVHDTGKGIAQEHLDRIFERFYKADSFVK----GVGLGLSICRTITEYLGGAI 437 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S KGT I PL Sbjct: 438 SVESESGKGTRFTIQHPL 455 >gi|295706849|ref|YP_003599924.1| two-component sensor histidine kinase PhoR [Bacillus megaterium DSM 319] gi|294804508|gb|ADF41574.1| two-component sensor histidine kinase PhoR [Bacillus megaterium DSM 319] Length = 590 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 103/373 (27%), Positives = 178/373 (47%), Gaps = 55/373 (14%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NRA + F +D L + ++ E Sbjct: 242 EMQQDRLRTLIENMGSGMLLIDSRGYINLVNRAYKEQFHIHPDDFL---YHLYYE----- 293 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 V H EI+ L +EKI + K K + L + I++ F Sbjct: 294 VFEH--KEIIKL-----VEKIFMTEVKVRKQVVLPLNIERRYFDVYGAPIIGLNDEWKGI 346 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL ++ DF+A VSHE++TP+T+I GFSE + + Sbjct: 347 VLVFHDITELK----KLEQVRR----------DFVANVSHELKTPITSIKGFSETLLD-- 390 Query: 615 FGPLGNPRY-IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + +P+ ++ + I + ++ DLLD+SK+E L V L+ + E + Sbjct: 391 -GAMEDPQLRQQFLSIILTESQRMESLIQDLLDLSKVEQQGFKLSIHSVDLNTLLYEVTT 449 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I + I D + + Q+ +N++ NA+ +T GG T H S Sbjct: 450 VLSNRATEKEITLTLDTLPEEAWIDGDSQRLMQVFVNLIGNALMYTMPGG-----TVHVS 504 Query: 734 NEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 EE + + V+DTG+G+ + E+ + + F ++ ++ GTGLGL + K +V+A+ Sbjct: 505 LEEEEETITVHVQDTGIGIDSDEISRIFERFYRVDKARSRNSGGTGLGLAIVKHLVEAHK 564 Query: 790 GKFYIFSTPAKGT 802 G+ + S KGT Sbjct: 565 GEIEVKSEVNKGT 577 >gi|256389376|ref|YP_003110940.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM 44928] gi|256355602|gb|ACU69099.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM 44928] Length = 1119 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 73/263 (27%), Positives = 137/263 (52%), Gaps = 16/263 (6%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 SE +Q + +L S +KS+FLA +SHE+RTPL +++ + ++ + G L Sbjct: 658 SEIEQARQELEERANQLTMSSRYKSEFLANMSHELRTPLNSLLILARLMSDNAEGNL-TE 716 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 R +EYA I +G+ +L ++ND+LD+SKIE+G+M++ +++ + V + + + Sbjct: 717 RQVEYAETIHGAGSDLLQLINDILDLSKIEAGRMDVQPARIAVSQLVDYVEATFRPQTEQ 776 Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG---------GQIIISTTH 731 K + +R A ++P + D + ++Q+ N+LSN++ FT +G G +++ Sbjct: 777 KGLELRVRVAPSVPAHLFTDEQRLQQVLRNLLSNSVKFTETGHVELVVDTVGDVVLGGPE 836 Query: 732 TSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 SNE V V DTG+G+ + +++ + F Q + R GTGLGL +++ + Sbjct: 837 DSNEVTLEPAVSFAVSDTGIGIVDDKIQTVFEAFQQEDGTTSRRYGGTGLGLSISREIAK 896 Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809 G S +G+ + P Sbjct: 897 LLGGGIRAESQRGRGSTFTLFLP 919 >gi|162450211|ref|YP_001612578.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161160793|emb|CAN92098.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 939 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 79/261 (30%), Positives = 134/261 (51%), Gaps = 26/261 (9%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q +L AK A+ + KSDFLA +SHE+RTPL I+G++++++ R + R I Sbjct: 428 EQRTAELKEAKVAADAANKAKSDFLANMSHELRTPLNGILGYAQILRRSRGLSEQDLRGI 487 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I RSG +L ++ND+LD++KIE+ M H L + + ++ A EK I Sbjct: 488 ---DVIHRSGAHLLTLINDVLDLAKIEAQAMEAHANDFHLPSFLRSTAEICRIRAEEKGI 544 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-----------------GQII 726 + + +P ++AD R ++Q+ +N+L NA+ FT G G Sbjct: 545 ALVYTPDPELPTDVVADERRLRQVLINLLGNAVKFTEKGRVSFTIKRLGDGPRPPYGSAP 604 Query: 727 ISTTHTSNEEVILRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 S + S RVR DTG G++ +L++ PF Q + ++ R +GTGLGL +++ Sbjct: 605 DSAANQSAPRRTHRVRFEIEDTGTGISPDQLDQIFLPFKQASDGKR-RVDGTGLGLAISQ 663 Query: 783 AMVDANMGKFYIFSTPAKGTL 803 ++ + S P KG++ Sbjct: 664 RIMKLLGSSIEVRSEPGKGSV 684 >gi|83815151|ref|YP_445365.1| histidine kinase PhoR1 [Salinibacter ruber DSM 13855] gi|83756545|gb|ABC44658.1| histidine kinase PhoR1 [Salinibacter ruber DSM 13855] Length = 596 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 78/268 (29%), Positives = 132/268 (49%), Gaps = 12/268 (4%) Query: 552 SCYSLTMHDISEWKQ----EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 Y++ + D + +Q K + A+ A + S KS FLA +SHEIRTPLT+IIGF+ Sbjct: 313 GTYAMVVLDRLQQEQVLRSAKEQAERARARAVEASKAKSAFLANMSHEIRTPLTSIIGFA 372 Query: 608 EVIKNQRFGPLGNP------RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 + I + P + ++ + + G +LD ++ +L++SK+ESG++ L E Sbjct: 373 DAIGEEIQSLKDCPDEANIVQLDRFSELVGQGGKRLLDTLDAVLNLSKLESGQIELAEEA 432 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V L E + ++ A EK + + + AD V+ + N+LSN I +T Sbjct: 433 VDLVEKTRQVAEELRPSAQEKDLCLDLQMDADEILARADEGGVQIVLQNLLSNGIKYTEE 492 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + H + E+ +L V D+G+GM E +PF Q + EG+G+GL + Sbjct: 493 GG--VQVRVHRTAEDAVLEVEDSGIGMEPERAEALFEPFRQASEGLSRKFEGSGVGLAVT 550 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K V+ G+ + + KG+ + P Sbjct: 551 KKAVEQMDGRVDVETEKGKGSRFVVRLP 578 >gi|294501501|ref|YP_003565201.1| two-component sensor histidine kinase PhoR [Bacillus megaterium QM B1551] gi|294351438|gb|ADE71767.1| two-component sensor histidine kinase PhoR [Bacillus megaterium QM B1551] Length = 590 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 103/373 (27%), Positives = 178/373 (47%), Gaps = 55/373 (14%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NRA + F +D L + ++ E Sbjct: 242 EMQQDRLRTLIENMGSGMLLIDSRGYINLVNRAYKEQFHIHPDDFL---YHLYYE----- 293 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------------SCY 554 V H EI+ L +EKI + K K + L + I++ F Sbjct: 294 VFEH--KEIIKL-----VEKIFMTEVKVRKQVVLPLNIERRYFDVYGAPIIGLNDEWKGI 346 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L HDI+E K KL ++ DF+A VSHE++TP+T+I GFSE + + Sbjct: 347 VLVFHDITELK----KLEQVRR----------DFVANVSHELKTPITSIKGFSETLLD-- 390 Query: 615 FGPLGNPRY-IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + +P+ ++ + I + ++ DLLD+SK+E L V L+ + E + Sbjct: 391 -GAMEDPQLRQQFLSIILTESQRMESLIQDLLDLSKVEQQGFKLSIHSVDLNTLLYEVTT 449 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I + I D + + Q+ +N++ NA+ +T GG T H S Sbjct: 450 VLSNRATEKEITLTLDTLPEEAWIDGDSQRLMQVFVNLIGNALMYTMPGG-----TVHVS 504 Query: 734 NEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 EE + + V+DTG+G+ + E+ + + F ++ ++ GTGLGL + K +V+A+ Sbjct: 505 LEEEEETITVHVQDTGIGIDSDEISRIFERFYRVDKARSRNSGGTGLGLAIVKHLVEAHR 564 Query: 790 GKFYIFSTPAKGT 802 G+ + S KGT Sbjct: 565 GEIEVKSEVNKGT 577 >gi|284046820|ref|YP_003397160.1| multi-sensor signal transduction histidine kinase [Conexibacter woesei DSM 14684] gi|283951041|gb|ADB53785.1| multi-sensor signal transduction histidine kinase [Conexibacter woesei DSM 14684] Length = 625 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 100/361 (27%), Positives = 161/361 (44%), Gaps = 34/361 (9%) Query: 454 LCSILEATSDGIAIINREGIILSTN---RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 L ++L+AT D IA+++REG + N RAV FG I V L+ T Sbjct: 265 LRAVLDATPDAIALLDREGAPIVDNPPMRAVRAAFGERATAIDHNGTLVPLDAATDGGGE 324 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 EI L ++ + Y+ + D + Sbjct: 325 EARDEITLLGTQRAFAR--------------------------YAAPVRD-GHGRVIGRL 357 Query: 571 LSHAKKIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 L + E+E+ K +F A VSHE+RTPLTAI+G+ E++ + + ++ Y Sbjct: 358 LVLREVTGEREAERVKEEFFALVSHELRTPLTAILGYVELVLGEDGATIDEEQH-RYLQI 416 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 ++R+ +L +V DLL +++ESG + L V L EA+ + A + I + Sbjct: 417 VERNAQRLLRLVGDLLFAAQVESGALLLEPGSVDLPRVTLEAVEAARPRAEDAGITLTAQ 476 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 A +P + D + Q+ N++SNA+ FTPSGGQ+ + + E I + DTGVG+ Sbjct: 477 IAPLVP-CVGDRDRLAQVLDNLISNALKFTPSGGQVGVRLSAADGEARI-DISDTGVGVP 534 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 E + F + N+ G GLGL + +A+V A+ G + S GT + P Sbjct: 535 AEEHARLFDRFFRASNATTRAVPGVGLGLMIVRAIVAAHGGTIGVDSEVGVGTTFTVRLP 594 Query: 810 L 810 L Sbjct: 595 L 595 >gi|254760065|ref|ZP_05212089.1| sensor histidine kinase [Bacillus anthracis str. Australia 94] Length = 453 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 125/251 (49%), Gaps = 13/251 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E + + L+H EK K++F+A +SHEIRTPLT I G+SE +K L Sbjct: 214 GELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKT--VDHLTEE 271 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + I + ++ +V +LLD S+++S NL+ + V L + + E I + A E Sbjct: 272 EIKQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEE 331 Query: 682 KRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K++ F I RI + D +KQI LNI+ NAI ++ G++ I T + VI Sbjct: 332 KKM----QFIKTIERIELIGDRNRLKQIFLNIVQNAIKYSHENGKVHIEATKNEGQAVI- 386 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 +V+D G+G+ L + F QI N G GLGL + K MV+ + G I S Sbjct: 387 KVKDDGIGIAKEHLPYIEQSFYQINN----HATGAGLGLAIVKKMVELHGGTINIISKEG 442 Query: 800 KGTLIEIIFPL 810 GT I I PL Sbjct: 443 IGTTILIKLPL 453 >gi|169335274|ref|ZP_02862467.1| hypothetical protein ANASTE_01685 [Anaerofustis stercorihominis DSM 17244] gi|169258012|gb|EDS71978.1| hypothetical protein ANASTE_01685 [Anaerofustis stercorihominis DSM 17244] Length = 617 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 126/230 (54%), Gaps = 9/230 (3%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNL 636 A+ S+ K FL+ +SHE+RTPL AI G + + K + + + + + ID S N Sbjct: 232 AQNASNAKGRFLSNISHEMRTPLNAISGMTRIGKEN----IDDKKEVTQCFEKIDTSVNY 287 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 + +++ND+LDIS+IESGK + P +LD + I+++Q NEK I + P Sbjct: 288 LTNLINDVLDISRIESGKTKIENRPFNLDTLIKNIITIIQNQTNEKEINFICKYDLKSPY 347 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGG--QIIISTTHTSN--EEVILRVRDTGVGMTNYE 752 ++ D ++QI +NI+ NAI +T + G ++IIS + N +V + D G+G+ + Sbjct: 348 LIGDELHLQQILVNIIGNAIKYTHNKGKVEVIISDDNIDNNKSKVNFTISDNGIGIEAKQ 407 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 L K F + N+ + + +GTGLGL ++ +V G+ + S KG+ Sbjct: 408 LPTIFKAFERADNAMEQQYKGTGLGLAISYNLVKMMGGELKVRSEVDKGS 457 >gi|118477428|ref|YP_894579.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|118416653|gb|ABK85072.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] Length = 465 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 125/251 (49%), Gaps = 13/251 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E + + L+H EK K++F+A +SHEIRTPLT I G+SE +K L Sbjct: 226 GELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKT--VDHLTEE 283 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + I + ++ +V +LLD S+++S NL+ + V L + + E I + A E Sbjct: 284 EIKQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEE 343 Query: 682 KRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K++ F I RI + D +KQI LNI+ NAI ++ G++ I T + VI Sbjct: 344 KKM----QFIKTIERIELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVI- 398 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 +V+D G+G+ L + F QI N G GLGL + K MV+ + G I S Sbjct: 399 KVKDDGIGIAKEHLPYIEQSFYQINNHTT----GAGLGLAIVKKMVELHGGTINIISKEG 454 Query: 800 KGTLIEIIFPL 810 GT I I PL Sbjct: 455 IGTTILIKLPL 465 >gi|320159585|ref|YP_004172809.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319993438|dbj|BAJ62209.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 584 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 13/228 (5%) Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD----IVN 642 DF++ VSHE+RTPL ++ E ++ G L +P A R + +D +V Sbjct: 364 DFVSNVSHELRTPLASLKALVETLQE---GALEDP---PAAQRFLRQMEIEIDNLTQMVR 417 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702 +LL++S+IESG + L PVS E + ++L A + ++ ++P + AD Sbjct: 418 ELLELSRIESGLVPLQRRPVSPCEILRRGAERMRLQAERAGLTLQVDCPESLPEVFADAE 477 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 V+Q+ +N+ NA+ FTP GG+I + + + VRDTGVG+ +LE+ + F + Sbjct: 478 RVEQVLVNLTHNAVKFTPPGGEITLGVKQ-EGQAICFWVRDTGVGIPPEDLERIFERFYK 536 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 S+ GEGTGLGL +A+ +V+ + G+ + S +G+ PL Sbjct: 537 TDRSRS--GEGTGLGLSIARHIVETHGGRIWAESQVQQGSTFFFTLPL 582 >gi|239907994|ref|YP_002954735.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797860|dbj|BAH76849.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1093 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 106/383 (27%), Positives = 181/383 (47%), Gaps = 34/383 (8%) Query: 440 TRINKRKMEIEVM-----QLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDIL 493 T + +RK + E + QL I T GIAI R +G I+ N +++FG+ +++ Sbjct: 570 TDVTRRKRDEEALRESQDQLAKIFRFTPVGIAITTRRDGRIVDVNETGARMFGHVKSEVI 629 Query: 494 -RKPFTVFLEQNTPSVMNHYLTEIL--------SLDLRQTLEKITLGSTKEEKLLSLRII 544 R V L + T L E+ LDLR GST + L Sbjct: 630 GRTAHEVGLWRRTEE-REALLAEMARAGSIFGKELDLRHKN-----GST----VTVLYSA 679 Query: 545 IKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 + + C + DI+E K + L +K+ AE + KS+FL+ +SHEIRTP+ I Sbjct: 680 VANHAYGEPCILSVLVDITERKAMEQALRRSKEAAESANRAKSEFLSTMSHEIRTPMNTI 739 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 +G +V+ I+ +G +L ++ND+LD+S+IE+G M + + Sbjct: 740 LGMVDVLAGTSL----TSDQTHAVKSIELAGAGLLGLLNDILDLSQIEAGGMVIEEKSCD 795 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSG 722 + E ++ +++ A+ K + +R ++ PR+ ++QI +N+L NAI FT G Sbjct: 796 IVELTTQLADMMRPDADRKGLELRLEIRGDLPPRLFCCPDRIRQILVNLLGNAIKFTQQG 855 Query: 723 GQII-ISTTH--TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 ++ +++T T + L VRDTG+G+ + F QI S + G GLGL Sbjct: 856 HVVLEVASTPSLTDGPRLRLAVRDTGIGIPADKQAVIFDRFTQINASANRQFGGVGLGLA 915 Query: 780 LAKAMVDANMGKFYIFSTPAKGT 802 + K + + G+ + S P +G+ Sbjct: 916 ICKKLAELMGGRIAVESAPGQGS 938 >gi|160885983|ref|ZP_02066986.1| hypothetical protein BACOVA_03989 [Bacteroides ovatus ATCC 8483] gi|156108796|gb|EDO10541.1| hypothetical protein BACOVA_03989 [Bacteroides ovatus ATCC 8483] Length = 808 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 124/250 (49%), Gaps = 11/250 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E + K +L +K+ AE S KS FLA +SHEIRTPL AI+GFS +I Sbjct: 421 DVTELEMMKRELLSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESDDAEER 480 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 Y N ++ + +L ++N++LD+SKIESG + F P SL E ++ Sbjct: 481 KT----YYNIVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCREVYD-AHIFR 535 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + + + ++ I D V Q+ N++ NA+ FT G I + +++ Sbjct: 536 TPQGVSLVYESSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS--ISYGYKLVDNQIVF 593 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG G+ ++ + + F ++ N Q GTGLGL + K++V+ GK + S Sbjct: 594 HVTDTGTGIEPEKVGRVFERFAKLNNHAQ----GTGLGLSICKSIVERLGGKISVSSEFG 649 Query: 800 KGTLIEIIFP 809 KGT P Sbjct: 650 KGTTFTFTLP 659 >gi|237801381|ref|ZP_04589842.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806664|ref|ZP_04593368.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024240|gb|EGI04297.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027778|gb|EGI07833.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 1117 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 112/397 (28%), Positives = 188/397 (47%), Gaps = 28/397 (7%) Query: 438 VDTRINKRKMEIEVMQ--LCSILEATSD-GIAIINREGIILSTNRAVSKLFGYP-VEDIL 493 ++ ++++R E+ + L ++L+A+S+ I +I+ +G I+ NR L GY E + Sbjct: 472 LEQQVSERTAELSRVAGLLQAVLDASSEVSIIVIDPQGQIVVFNRGAELLLGYGNSEMVR 531 Query: 494 RKPFTVF-----LEQNTPSVMNHYLTEILSLDL------RQTLEKITLGSTKEE-KLLSL 541 RK +VF + + + Y T I+ +D+ R+ E + + + + Sbjct: 532 RKDPSVFHLPEEVAARSAELSREYGTSIVGIDVFFYKADREGSETRQWTYVRRDGTTVPV 591 Query: 542 RIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 +I+ + + + DI+E +L AK AE ++ KS FLA +SHEIR Sbjct: 592 SMIVTPIRTADGEVIGHLGIAQDITERLHRNAELHAAKASAEAANAAKSLFLANMSHEIR 651 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ A+IG S ++ N N + + + +G +L I+ND+LDI+KIE+G+M L Sbjct: 652 TPMNAVIGISHLLHNTAL----NDQQRQLLTKLQIAGRSLLGIINDILDIAKIEAGEMRL 707 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAI 716 P S E L A EK + S +P +L D V QI +N++ NA+ Sbjct: 708 ENNPFSPRLLFDELSELFSPQAQEKGLRFSVSVVTPLPGLLIGDALRVNQILMNLVGNAL 767 Query: 717 HFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 FT GG + +S + + LR V+DTG G+ L + PF Q S R G Sbjct: 768 KFTTVGGVDVTVSCESDTADTCWLRLSVQDTGCGIPADVLGQLFSPFTQADASTTRRFGG 827 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 TGLGL + + + + G+ + S G+ + P Sbjct: 828 TGLGLSVVRGLSEQMGGRVGVESELGAGSEFWVSLPF 864 >gi|317051957|ref|YP_004113073.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum indicum S5] gi|316947041|gb|ADU66517.1| ATP-binding region ATPase domain protein [Desulfurispirillum indicum S5] Length = 378 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 111/391 (28%), Positives = 196/391 (50%), Gaps = 38/391 (9%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV------EDILRKPFTV 499 K +I L I+E ++ + +++REG IL TN L G + E IL T Sbjct: 2 KHDIGTPLLHHIMERSAMAVLVLDREGRILETNSYAKSLVGRDILRLFLSEVILDFSSTF 61 Query: 500 FLEQNTPSVMNHYLTEILSLD-LRQTLE---------KITLGSTKEEKLLSLRIIIKKLP 549 L+ + + YL + S+D L TL + +G E++ LR + L Sbjct: 62 CLKSCLQNSKDSYLLNLPSIDGLAHTLYFRFYEEAEYILAIGEQHHEEINLLRKNMIDLN 121 Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 H++ ++ K HA+ EK + K+ FL +H++R P+ I+ S+ Sbjct: 122 ---------HELGNANRDLQK-KHAE--LEKLNELKNQFLGMAAHDLRNPIGTIMTLSDF 169 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + F L + +I + I S +L+++NDLLDI+KIE+G+M L+ PV+L+ + Sbjct: 170 LLEEAFEHLSS-EHIHFLTMIRSSSGFMLNLLNDLLDIAKIEAGRMGLNITPVNLETLIE 228 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 + ++ + A +KR+ + S P +LAD ++Q+ N+L+NAI F+P G++ ++ Sbjct: 229 KTLAFQRFQARKKRVELVFSCYEQHPMVLADSLKIEQVLQNLLTNAIKFSPPEGKVTVN- 287 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ-IPNSQQIRGE-GTGLGLPLAKAMVDA 787 S + + V D G G+ +L KPF + +P + + GE GTGLGL + + ++ A Sbjct: 288 LFGSQGHLTVAVTDQGPGIPADQLSNIFKPFSRDVPPAPE--GEKGTGLGLSIVQKIILA 345 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 + G ++ S P +GT +F L + PH+ Sbjct: 346 HRGSIWVESKPGEGT--SFLFAL--QAQPHE 372 >gi|188577308|ref|YP_001914237.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521760|gb|ACD59705.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 921 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 127/242 (52%), Gaps = 8/242 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S K+ FLA + HE+RTP+T ++G SE++ + Y I R Sbjct: 539 HKQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTSL----DITQRSYTESIRR 594 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--RILIRTSF 690 +G +L +VND LD+++IESG++ L +P S+ + V+E +L+ A E+ R + Sbjct: 595 AGAHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVEALMAPLAQERGLRFSLEIGL 654 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 +I D ++QI LN+L+NAI FT G + TT S + + V DTG G+ Sbjct: 655 LGDIT-ASGDSTRIRQILLNLLNNAIKFTERGVVGLKLTTLGSYQGLRFEVADTGPGINA 713 Query: 751 YELEKAMKPFGQIPNSQ-QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + + F Q ++ R G+GLGL + + + A G + S +GT + P Sbjct: 714 EQKARLFQRFEQGDGARTNSRYGGSGLGLAICQELAMAMGGHIEVISRLGEGTRFVVDLP 773 Query: 810 LY 811 L+ Sbjct: 774 LH 775 >gi|222526335|ref|YP_002570806.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|222450214|gb|ACM54480.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 425 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 126/242 (52%), Gaps = 21/242 (8%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 + D +A VSHE+RTPL ++ E +++ + + + A ID V +V++L Sbjct: 186 RRDLVANVSHELRTPLASLKLLVETVQSAPPPDIASRMLEQMAQEIDA----VTQLVDEL 241 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 ++S++ESG+++L EP+ + + A+ ++ A+ K+ +I A ++P L D + Sbjct: 242 HELSRLESGRVSLKLEPLPVWPVIERAVERIRPQADRKQQVICVEPAADLPLALMDGDRI 301 Query: 705 KQIALNILSNAIHFTPSGGQIIIST-----------------THTSNEEVILRVRDTGVG 747 Q+ LN+L NA+ FTP GG I ++ H + +++RV DTG+G Sbjct: 302 GQVLLNLLHNAVKFTPEGGTITVAAEVLTLRDDEQPSRPDRPPHPAGTWLLIRVSDTGIG 361 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + N ++++ + F ++ ++ GTGLGL +AK +V+ + G+ + S G+ Sbjct: 362 IPNRDIQRIFERFYKVDRARTRHAGGTGLGLAIAKHLVEGHGGRIWASSQEGHGSTFWFT 421 Query: 808 FP 809 P Sbjct: 422 LP 423 >gi|189426492|ref|YP_001953669.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189422751|gb|ACD97149.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 717 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 140/253 (55%), Gaps = 14/253 (5%) Query: 558 MHDISEWKQEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M ++ + +E+ + L+ A++ AE S KS+FLA +SHEIRTP+ ++G +E++ + F Sbjct: 187 MANLEQRVEERTRELAIAREKAEAASRAKSEFLANMSHEIRTPMNGVMGMTELLLDGGFS 246 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P + + D + NL++ I+ND+LD SKIE+GK+ L P L + + + + + Sbjct: 247 P--EQQRKQLLAIRDSAENLMV-IINDILDFSKIEAGKLELAAAPFLLRKNLEQGLYSLG 303 Query: 677 LYANEK--RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 L A +K R++IR A +P R+ D ++QI +N++ NAI F+ G+I +S + Sbjct: 304 LKAEQKGLRLVIRVDQA--VPDRLDGDCYKLRQILINLVGNAIKFSDQ-GEITVSAQLEA 360 Query: 734 NEEVILRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + L VR D G+G+ + + F Q + + GTGLGL + + + + Sbjct: 361 SRGGFLLVRFCVADQGIGIPLESQSRIFETFEQADVTTTKKFGGTGLGLTICRRLAELMG 420 Query: 790 GKFYIFSTPAKGT 802 G+ ++ S P KG+ Sbjct: 421 GRIWVKSEPGKGS 433 >gi|91772372|ref|YP_565064.1| GAF sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711387|gb|ABE51314.1| Signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 556 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 121/225 (53%), Gaps = 3/225 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K++F A +SHE++TP+ +I GFSE++ + +FGPL N + + + R+ + D+++ L Sbjct: 334 KNEFFANLSHELKTPMISIKGFSELLGDGKFGPL-NVEQKKANDAVVRNAERLKDLIDSL 392 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 L + + GK F P+ + + ++ ++ A I+ R NIP I D + Sbjct: 393 LYMCMEKEGKYKYDFVPLPIKRLILNSLEKARVQAGSNNIVFRDEIPENIPVIYGDEERL 452 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 NIL NA+ F G ++I+S + + + LR++D G+G+ +++K F Q+ Sbjct: 453 TTALNNILDNAVKFMLEG-EVIVSVQDEA-DHIHLRIKDNGIGIPKNKVDKVFDSFYQVD 510 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 S GTG+GL ++K ++D + GK ++ S GT + I+ P Sbjct: 511 GSLTRMYGGTGIGLHVSKRIIDVHNGKIWLKSLEGFGTTVHILLP 555 >gi|84387561|ref|ZP_00990579.1| hypothetical protein V12B01_11270 [Vibrio splendidus 12B01] gi|84377609|gb|EAP94474.1| hypothetical protein V12B01_11270 [Vibrio splendidus 12B01] Length = 863 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 95/271 (35%), Positives = 142/271 (52%), Gaps = 14/271 (5%) Query: 554 YSLTMHDISEWKQEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 ++ T++ + E + NK L AK+ A + KS FLA +SHEIRTPL IIG +E++ Sbjct: 339 FTETLNRVMERNYQHNKELVEAKEDAISANKAKSAFLANMSHEIRTPLNGIIGMAEILSQ 398 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + N + E I+ S + +L ++ND+LD+SKIESG + L L EAV +++ Sbjct: 399 SQLS--ANQQ--EVLGDIESSSHSLLVLLNDILDLSKIESGNLMLSPHNADLREAVYDSV 454 Query: 673 SLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 S++ A K I + + + P++ D V+Q+ N+LSNAI FT S G I + Sbjct: 455 SVILSKAISKDIELDINIDSQTPPQLFFDEYRVRQVLTNLLSNAIKFT-SKGTITTDIAY 513 Query: 732 T----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 T ++ V DTG+G+ +LE +PF Q S + GTGLGL + + +VD Sbjct: 514 TPMSLGRGKLECSVSDTGIGIEPEKLESIFEPFTQEDGSITRQFGGTGLGLAICRQLVDL 573 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLY-DTSHPH 817 G YI + KG F LY DT H Sbjct: 574 MGG--YITARSVKGEGSTFTFCLYVDTVETH 602 >gi|209524002|ref|ZP_03272554.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209495674|gb|EDZ95977.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 966 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 129/239 (53%), Gaps = 8/239 (3%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 N L + A KS FLA++SHEIRTP++ ++G E++ P+ +Y Sbjct: 284 NNLVETRNAALDAVQFKSRFLAQMSHEIRTPMSGVLGMVELLMQTHL----TPQQKDYTQ 339 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I RS +L ++N++LD+SK+E+G+ +L L + + + L+ + A +K++ + Sbjct: 340 TIYRSAKHLLTVINEILDLSKLEAGETHLESHDFDLQDCLETVVDLLAVKAEDKQLELII 399 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDT 744 N+PR L D ++Q+ +N+++NAI FT SG II T +++ + + DT Sbjct: 400 LLEPNLPRYLKGDGMRLQQVLINLVNNAIKFTKSGHIIIRVTPRVISQDHINIYFAIEDT 459 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 G+G+++ + +PF ++ + GTGLGL + + +V+ G+ + S +G++ Sbjct: 460 GMGISDELQPQLFQPFSPASSATNRQYGGTGLGLSICQHLVNLMGGEIGVKSQEEEGSI 518 >gi|163852923|ref|YP_001640966.1| ATPase domain-containing protein [Methylobacterium extorquens PA1] gi|163664528|gb|ABY31895.1| ATP-binding region ATPase domain protein [Methylobacterium extorquens PA1] Length = 932 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 129/243 (53%), Gaps = 7/243 (2%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + + L AK+ A++ ++ KS FLA +SHEIRTP+ ++ +E++ + PR Sbjct: 269 EIRLRTHDLIEAKQSADEANAAKSVFLATMSHEIRTPMNGMLVMAELLASADL----PPR 324 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 YA I RSG +L I+ND+LD +K+E+G++ + P+S + ++L A Sbjct: 325 QQRYAQVIARSGQSLLAIINDILDFAKVEAGRLEVERIPLSPRDVADTVVTLFAERARSA 384 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVI-L 739 + + ++PR +L D + Q+ N +SNA+ FT +G ++ + H S+ V+ + Sbjct: 385 GLDLAAQIDGDVPRSLLGDPVRLGQVLGNFVSNALKFTATGHVLVRMEMEHESSGPVLRI 444 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ L F Q S R GTGLGL +A+ ++ A G+ + S Sbjct: 445 AVSDTGIGIPQDRLSGIFTAFTQADQSIARRFGGTGLGLSIAERLIAAMGGRVGVESRLG 504 Query: 800 KGT 802 +G+ Sbjct: 505 EGS 507 >gi|2460283|gb|AAB71889.1| hybrid histidine kinase DHKB [Dictyostelium discoideum] Length = 1969 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 96/378 (25%), Positives = 183/378 (48%), Gaps = 16/378 (4%) Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + ++ +++E + ++ S+ +++ + +++++G+I N A +F ++D+L P Sbjct: 816 SSVDLKEIERKESRIQSLFRISNEAL-VVHKDGLITDANPAFESMFQIKLQDLLY-PIQS 873 Query: 500 FLEQNTPSVMNHY---LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 + + P++ + +++ +E + S+ + +R + Sbjct: 874 GIWEFLPALEGMFEPGASKLFDNPDMGVIETTGIDSSGRTFQVEVRTNKATYDGEPVDVI 933 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 ++ DI+ KQ + +A + AE + K FL VSHE+RTP+ ++ +++++ Sbjct: 934 SIIDITGRKQLM-EADYALRKAEAANEAKVIFLTTVSHELRTPINGVLASADILERTTLD 992 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 E+ N I SGN +LD++ND+LD SKIE+GKM + S+ + + +I +V Sbjct: 993 STQK----EFLNCIKLSGNYLLDLINDILDYSKIEAGKMEIIKYDFSILKMLDNSIRIVS 1048 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIS----TTH 731 EK + + N+P I+ D R +KQI LN LSN+I FT + GQIII T Sbjct: 1049 KNIYEKGLDLFIFIDPNVPVIVNGDQRRIKQILLNFLSNSIKFT-NHGQIIIRVKLVTDD 1107 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 +++ + V D+G+G+ L F QI + + GTGLGL ++K + G Sbjct: 1108 STHSLIKFDVEDSGIGIKTEHLNPLFASFSQIDSGNSRKYRGTGLGLSISKRLCKMMGGD 1167 Query: 792 FYIFSTPAKGTLIEIIFP 809 + S G+ P Sbjct: 1168 VKVKSEFGVGSTFSFTIP 1185 >gi|78060129|ref|YP_366704.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383] gi|77964679|gb|ABB06060.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383] Length = 781 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 94/370 (25%), Positives = 168/370 (45%), Gaps = 25/370 (6%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++++A+ D I I+ +G I+S N A ++FGY + F + + LTE Sbjct: 269 AVVDASPDAIVGIDTDGRIVSWNPAAQRMFGYDDAHARGRTFESLVAMRW--LKRKPLTE 326 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKL 571 D+ + + I L + + R + P S C +L++ Q + L Sbjct: 327 SFD-DMHEAVGPIDLLCVRRDGR-RFRATVSAGPVRSDARACVALSLTLRESGAQRRRDL 384 Query: 572 S-----HAKKIAEKESSH----KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 ++A +++ K + LA VSHE+RTPL I G+ EV++N G+ Sbjct: 385 RAQRSLRGARVARDQAATSNRLKDELLATVSHELRTPLNVIYGWVEVLRNS-----GDSA 439 Query: 623 YIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + A + IDRS + +V D+LD S + +GK+ L PV + S+++ Q A+ Sbjct: 440 LQQQAIDAIDRSARSLTRMVGDILDASSLATGKLQLDAMPVDVVRLFSDSVGAFQTAASS 499 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 I++ A + + D ++Q+ N++SNA+ FTP+GG + + + V+L V Sbjct: 500 AGIVLEFDCAASTCVVSGDAERLRQMLSNLVSNALKFTPAGGSVTVGLAR-DDVRVVLTV 558 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA-K 800 DTG G+ L F + +S G GLGL + + + + + G + S + Sbjct: 559 SDTGQGIVPAFLPYVFDMFRRADDSPASSRRGLGLGLSIVRHIAELHGGSVTVKSAGRNR 618 Query: 801 GTLIEIIFPL 810 G + P+ Sbjct: 619 GATFTVTLPV 628 >gi|312872733|ref|ZP_07732798.1| PAS domain S-box protein [Lactobacillus iners LEAF 2062A-h1] gi|325912287|ref|ZP_08174684.1| PAS domain S-box protein [Lactobacillus iners UPII 143-D] gi|311091775|gb|EFQ50154.1| PAS domain S-box protein [Lactobacillus iners LEAF 2062A-h1] gi|325475946|gb|EGC79115.1| PAS domain S-box protein [Lactobacillus iners UPII 143-D] Length = 612 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 98/383 (25%), Positives = 179/383 (46%), Gaps = 45/383 (11%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E +L ++L +DG+ +R G I N ++ +P T L Sbjct: 258 ERRRLDNVLMHMTDGVIATDRHGNITIINETALNFLDKTENEVKGEPITQLLG------- 310 Query: 510 NHYLTEILSLDLRQTLEKITL---GSTKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEW 564 L E+ DL T +++ + +T +E +L +I + F S +HDI+E Sbjct: 311 ---LKEVTIQDLMSTQQELIVTANANTHDELILHADFSLIQRVTGFVSGLICVLHDITE- 366 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQRFGPLG 619 Q+KN+ + + F++ VSHE+RTPLT++ + E + KN+ P Sbjct: 367 -QQKNE------------NEQRQFVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAP-- 411 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 ++ I ++ ++NDLL++S+++ G + + E V+L++ +S ++ + Sbjct: 412 -----QFLGVIQNETERMIRMINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMML 466 Query: 680 NE---KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 K+ IR F + + D + Q+ NI++NAI ++P GG I I T ++ Sbjct: 467 KNDGVKKYKIRRIFPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQT-HKH 525 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 VIL V D G+G+ +L + F ++ ++ + GTGLGL ++K +V+A+ GK + S Sbjct: 526 VILSVSDQGLGIPRKDLSRIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADS 585 Query: 797 TPAKGTLIEIIFPLYDTSHPHDC 819 + G+ I P S D Sbjct: 586 SEGNGSTFYISIPYEKMSEEGDM 608 >gi|300869219|ref|ZP_07113813.1| two-component sensor histidine kinase [Oscillatoria sp. PCC 6506] gi|300332764|emb|CBN59011.1| two-component sensor histidine kinase [Oscillatoria sp. PCC 6506] Length = 607 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 80/259 (30%), Positives = 136/259 (52%), Gaps = 22/259 (8%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP----RYI 624 +L A+ A S KS FLA SHE+RTPL ++GF +++ + G +P ++I Sbjct: 335 QELEQARAEAVALSQLKSQFLANTSHELRTPLNGMLGFLKLVMD---GMADDPEEEHQFI 391 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + A RS +L+++ND+LDI+KIE+GKM L P+ ++E + E + Q +K++ Sbjct: 392 QEAY---RSALHLLNLINDVLDIAKIEAGKMELELTPIKINELLQEVENFTQAQLQQKQL 448 Query: 685 LIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHTSNEE- 736 + I+ + + + Q+ LN++ NAI FT GG ++I N E Sbjct: 449 NFKIQKPATQDEIIVYGNYQRLLQVMLNLVGNAIKFTHEGGISISMELIKKKIVIQNREL 508 Query: 737 ---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 V +RV DTG+G++ + +K + F Q+ + + GTGLGL +++ +V+A G Sbjct: 509 PGLVKIRVADTGIGVSLDKQDKLFQSFFQVDGDRTRQYGGTGLGLAISQKLVEAMRGTVN 568 Query: 794 IFST-PAKGTLIEIIFPLY 811 +S G+ + PLY Sbjct: 569 FYSMGEGLGSTVTFTIPLY 587 >gi|253581814|ref|ZP_04859038.1| multi-sensor signal transduction histidine kinase [Fusobacterium varium ATCC 27725] gi|251836163|gb|EES64700.1| multi-sensor signal transduction histidine kinase [Fusobacterium varium ATCC 27725] Length = 617 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 98/369 (26%), Positives = 181/369 (49%), Gaps = 27/369 (7%) Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TVF 500 IN +K+ E + +I+E+ +DGI + ++E IL N A KL ++L KPF T Sbjct: 258 INIKKIMTEKSKAEAIVESINDGIIVTDKENKILLINNAAEKLLNIKESELLDKPFFTAI 317 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLG-STKEEKLLSLRIIIKKLPFSSCYSL--- 556 + +N + S +++ T++++ L + EK + R+ I + + +L Sbjct: 318 PNKKIHESINEVIN---SREIKSTVKQLELSLNPALEKNIYCRVFINSIIGKNKENLGIV 374 Query: 557 -TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + DI++ K+ KSDF++ VSHE RTPLT+I E++K+ Sbjct: 375 TLLQDITKLKEI--------------DQMKSDFVSTVSHEFRTPLTSIGMAVELLKDGSV 420 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G + N E I + ++ DLLD+S++ESGK +L FE ++ + + ++ + Sbjct: 421 GTI-NETQQELLKVIKEDSERLNVLIKDLLDLSRLESGKTHLKFEKNNIKKIIETTVNSL 479 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS--GGQIIISTTHTS 733 + + + + I + +LAD+ + + N+++NAI + G III Sbjct: 480 KNLSENRNVKIEIKNVGSSLFVLADINKIILVLTNLITNAIKYKSEEREGHIIIE-AFKK 538 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + +++ V D G G+ +EK F Q+ S + + EGTGLGL + K ++ + G+ + Sbjct: 539 EKNIVVSVEDNGRGIPEEYIEKIFNKFIQVKVSNEGKIEGTGLGLSICKEIIKNHGGEIW 598 Query: 794 IFSTPAKGT 802 + S KG+ Sbjct: 599 VDSILGKGS 607 >gi|163801498|ref|ZP_02195397.1| putative two-component sensor [Vibrio sp. AND4] gi|159174987|gb|EDP59787.1| putative two-component sensor [Vibrio sp. AND4] Length = 641 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 136/261 (52%), Gaps = 11/261 (4%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y+L++ + E + E + A+ AE + KS+FLA +SHEIRTP+ I+G + ++ + Sbjct: 216 YNLSVERVRERQVE---IEEARDKAEVANRKKSEFLATMSHEIRTPMNGIVGIASLLNDT 272 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + + + + N I+ S + ++ I++D+LD SKIE+GK+ L +L + +SE Sbjct: 273 KL----DKQQKDLVNVINSSSHSLMVIIDDILDFSKIEAGKIELEVTHYNLFDLLSEVGR 328 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTH 731 L + A +K + + +P + D+ +KQ+ N+L+NA+ FT G ++++S Sbjct: 329 LHTVKAQQKSLQLVCDIDPQLPLEVEGDVGRLKQVLNNLLTNAVKFTERGYVKLLVSQVS 388 Query: 732 TSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 V+ RV D+G+G+ + + F Q S + GTGLGL + +++ Sbjct: 389 RRGRVANVLFRVVDSGIGIAKENQQAVFEKFQQADGSTMRKYGGTGLGLAICSRLIEVMG 448 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 GK + S G+ E PL Sbjct: 449 GKILLTSELGLGSCFEFTIPL 469 >gi|120601627|ref|YP_966027.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] gi|120561856|gb|ABM27600.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] Length = 1005 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 78/254 (30%), Positives = 135/254 (53%), Gaps = 13/254 (5%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ ++LS AK+ AE + KS+FLA +SHE+RTPL ++G ++++ N Sbjct: 612 ERRRSLHRLSLAKEHAESANRAKSEFLANMSHELRTPLNGMLGMLQLLEAGDLDRDQN-- 669 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 E + SG +L +++D+LD+S+IE+G+M L + S +EAV + + ++A + Sbjct: 670 --ELVHIALDSGRTLLRVLSDILDLSRIEAGRMELRHDRFSPEEAVRQ---VYDMFAQDA 724 Query: 683 RIL-IRTSF-ANNIP-RILADLRSVKQIALNILSNAIHFTPSG--GQIIISTTHTSNE-E 736 RI +R + + +P + D ++QI N+L NA+ FT G G + + T Sbjct: 725 RIRGLRLRWRCDELPCEVWGDGTRLRQILFNLLGNAMKFTHEGTVGVEVCAVRRTEESVR 784 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 ++ V DTG+G+ + L +PF Q+ S R GTGLGL + + +V G + S Sbjct: 785 LLFSVSDTGIGIPHDRLMSIFEPFTQLDGSTTRRYSGTGLGLGIVRRLVHLMGGGLNVES 844 Query: 797 TPAKGTLIEIIFPL 810 +GT + + P Sbjct: 845 ALGEGTAVHVCLPF 858 >gi|322696596|gb|EFY88386.1| putative histidine kinase HHK2p [Metarhizium acridum CQMa 102] Length = 2074 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 80/262 (30%), Positives = 127/262 (48%), Gaps = 21/262 (8%) Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 +S Y + DI++ K + KL A + K FL+ +SHEIRTPL I G + Sbjct: 1385 ASSYFGSATDINDHKLLEAKLKEAME-------SKGRFLSNMSHEIRTPLIGISGMVSFL 1437 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 ++ N +Y N I S N ++ I+ND+LD+SK+++G M L +E + + Sbjct: 1438 QDTTL----NEEQRDYTNTIQTSANSLIMIINDILDLSKVDAGMMKLKYEWFHTRSLIED 1493 Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 LV A KR+ + ++P + D ++Q+ LN++ NAI FT G Sbjct: 1494 VNELVSTMAIAKRLELNYLVEADVPAWVKGDKVRIRQVLLNVIGNAIKFTAEGEVFSRCR 1553 Query: 730 THTSNEEVI---------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 +T + V+ + DTG G T E E KPF QI S + G+GLGL + Sbjct: 1554 VYTEEDPVVCNENEIMLQFAITDTGRGFTKEEAELIFKPFSQIDGSSTRQHGGSGLGLVI 1613 Query: 781 AKAMVDANMGKFYIFSTPAKGT 802 ++ +V+ + GK + P KG+ Sbjct: 1614 SRQLVELHGGKMEGTAIPGKGS 1635 >gi|303248386|ref|ZP_07334646.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490184|gb|EFL50102.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 651 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 80/269 (29%), Positives = 133/269 (49%), Gaps = 10/269 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ D++ KQ + L +++ AE +S K++FLA +SHEIRTPL I+G + +++ Sbjct: 234 TIQDVTAQKQIEADLIESRQRAELANSAKTEFLANMSHEIRTPLNGILGMLQALEDT--A 291 Query: 617 PLG-NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P R+I A R+ + ++ND+LD+S+IE+GK+ + P L E V+ L Sbjct: 292 PSAEQQRFIGAAI---RASRRLAQLLNDILDLSRIEAGKIRITPGPFKLSELVASIEELF 348 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS 733 A +K + + S A+ IP +L D ++QI N++ NAI FT G + I Sbjct: 349 SYSARKKGLSLSFSVASGIPNDLLGDAVRIRQILFNLIGNAIKFTNQGSVSLTIEPIRVE 408 Query: 734 NEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + + V DTG+G+ + +PF Q +G GLGL + K + G+ Sbjct: 409 EQRIRLLFTVADTGIGIPETLMAHICEPFTQARPDTLPPTQGVGLGLSIVKKLTRLMNGE 468 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 + S GT + + PL P + Sbjct: 469 VTLESREGHGTTVSLSLPLELPQQPETAV 497 >gi|225863934|ref|YP_002749312.1| sensor histidine kinase [Bacillus cereus 03BB102] gi|225790705|gb|ACO30922.1| sensor histidine kinase [Bacillus cereus 03BB102] Length = 459 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 125/251 (49%), Gaps = 13/251 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E + + L+H EK K++F+A +SHEIRTPLT I G+SE +K L Sbjct: 220 GELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKT--VDHLTEE 277 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + I + ++ +V +LLD S+++S NL+ + V L + + E I + A E Sbjct: 278 EIKQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEE 337 Query: 682 KRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K++ F I RI + D +KQI LNI+ NAI ++ G++ I T + VI Sbjct: 338 KKM----QFIKTIERIELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVI- 392 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 +V+D G+G+ L + F QI N G GLGL + K MV+ + G I S Sbjct: 393 KVKDDGIGIAKEHLPYIEQSFYQINNHTT----GAGLGLAIVKKMVELHGGTINIISKEG 448 Query: 800 KGTLIEIIFPL 810 GT I I PL Sbjct: 449 IGTTILIKLPL 459 >gi|255305464|ref|ZP_05349636.1| two-component hybrid sensor kinase/response regulator [Clostridium difficile ATCC 43255] Length = 801 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 80/250 (32%), Positives = 134/250 (53%), Gaps = 20/250 (8%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA-N 628 +L +++A + + KS+FLA +SH+IRTP+ AI+G + + K + + ++ Sbjct: 279 ELDKNREMALEANKAKSEFLANMSHDIRTPMNAIVGMTAIAKAH----IDDQEQVKNCLR 334 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I S +L ++ND+LD+SKIESGK+ L E +SL E + +S++Q K + Sbjct: 335 KITLSSKHLLGLINDVLDMSKIESGKLALTMEQISLREIIEGIVSIIQPQVKVK----KQ 390 Query: 689 SFANNIPRIL-----ADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVI-- 738 +F +I IL D + Q+ LN+LSNA +TP GG I + E+ + Sbjct: 391 NFDIHINNILTENVWCDGVRLNQVLLNLLSNATKYTPEGGSIQLDLFEEKSPKGEDFVRV 450 Query: 739 -LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 ++V+D G+GM+ L+K + + + ++ + EG GLG+ + K +VDA G + S Sbjct: 451 HIKVKDNGIGMSPTFLKKIYESYSRADGTRIHKTEGAGLGMAITKYIVDAMEGTINVQSE 510 Query: 798 PAKGTLIEII 807 KGT II Sbjct: 511 LDKGTEFHII 520 >gi|158333667|ref|YP_001514839.1| two-component hybrid histidine kinase sensor and regulator [Acaryochloris marina MBIC11017] gi|158303908|gb|ABW25525.1| two-component hybrid histidine kinase sensor and regulator [Acaryochloris marina MBIC11017] Length = 768 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 100/371 (26%), Positives = 170/371 (45%), Gaps = 37/371 (9%) Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 G+A+++ G L N A++ L GYP ++ T + S+ T L L R+ Sbjct: 169 GMALVSPSGQCLRVNHALAHLLGYPQTKLMDLILTEMIHPKDRSIEE---TNRLRLVARE 225 Query: 524 ----TLEKITLGSTKEE--KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK--------- 568 LE L E L+++ ++ + + + + DI+ KQ + Sbjct: 226 IGNYCLELRCLHQQGHEVWVLMNVSLVNGQEVYPPYCIVQVQDITRRKQAEAQLQRLNAN 285 Query: 569 ---------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +L A + E + KS F+A +SHE RTPL I+GFS+++ R Sbjct: 286 LEQLVEERTRQLKEAIETTEIANQAKSRFIANMSHEFRTPLNGIMGFSQLLLQDRRITSD 345 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + N I RSG +L +VN+++ +SKIE+G + + V+L L+ L A Sbjct: 346 QQSNL---NVILRSGEHLLSLVNEVITLSKIEAGMLAYESKDVNLHHLCEGVEDLLSLQA 402 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII-----STTHTS 733 N K I + A ++P+ + D + ++QI +N+L NA+ FT G + S S Sbjct: 403 NSKDIQFQIHIAPDVPQYVRTDAKKLRQILINLLGNALKFTKRGSVVCQVQWRPSAPERS 462 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E+ ++DTG G+ + L + +PF Q P +++ G G GLGL + + + G Sbjct: 463 AHELHFIIQDTGPGIPGHLLPQLFEPFAQDPLNRETFG-GIGLGLTICQRFIHLMKGDIS 521 Query: 794 IFSTPAKGTLI 804 I S +GT + Sbjct: 522 IESVEGQGTTV 532 >gi|95928336|ref|ZP_01311084.1| PAS/PAC sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95135607|gb|EAT17258.1| PAS/PAC sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 867 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 100/364 (27%), Positives = 183/364 (50%), Gaps = 28/364 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +IL + +DG+ + NR+ I NRA KL + + ++ V + L Sbjct: 527 AILTSLTDGMIVSNRDHHITMINRAAQKLLDVDEHQAIGQLVETIVD---GQVFSDELGS 583 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY---SLTMHDISEWKQEKNKLS 572 ILS + T + + ++ +R+I + FS+ Y S+ I+ + ++ Sbjct: 584 ILSQEKTTTTIDVEMMDQSRQE---MRVIQAR--FSAIYDNESIPSGAITLLQD----VT 634 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 ++++A KS+F++ +HE+RTPLTA++GFS+++ + EY I Sbjct: 635 RSREMARL----KSEFISTAAHELRTPLTAMLGFSDLLLES--PDISAEERREYLQIISS 688 Query: 633 SGNLVLDIVNDLLDISKIESGKM-NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 + IV+DLLD+S+IESG++ L + + L + + + L++ Y + + Sbjct: 689 KSESLAAIVDDLLDLSRIESGRLITLDQKQIPLQQTL---VGLIEQYRDSCPDHQFITHL 745 Query: 692 NNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 N+I +L D + Q+ N+LSNA+ ++P GG I I T + +L + D G+GMT Sbjct: 746 NDIDSMLYIDENKMAQVIENLLSNAVKYSPEGGNISIETRREPD-GFLLTIADQGIGMTP 804 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 ++E+ F ++ + G G GLG+ +AK +V+A+ G+ ++ ST +GT + PL Sbjct: 805 AQVERIFNKFYRVDGTNTAVG-GLGLGMSIAKHIVEAHQGEIWVESTINQGTTSYVRLPL 863 Query: 811 YDTS 814 D S Sbjct: 864 SDLS 867 >gi|149276155|ref|ZP_01882299.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] gi|149232675|gb|EDM38050.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] Length = 633 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 130/245 (53%), Gaps = 8/245 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ + + AK+ AE + KS FLA +SHEIRTP+ ++G + ++KN PL + Sbjct: 228 EAEKARREAEKAKREAEHAAGAKSIFLATMSHEIRTPMNGVMGMTSLLKNT---PLSAEQ 284 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +Y N I+ S +L ++ND+LD SKIESG M+L L + + + I L + Sbjct: 285 -ADYVNVINTSSEALLSVINDVLDYSKIESGHMDLQERTFELKKCILDVIDLFAEKSLMS 343 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVIL- 739 + +R +P+ I+ D ++Q+ +N+L+NA+ FT G + + T + + Sbjct: 344 GVALRYELDPALPKYIITDDLRLRQVLINLLNNALKFTTVGHVFLKVGLLRTVENRITIG 403 Query: 740 -RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG+G+ ++ K F Q+ ++ + G+GLGL +++ +V G + S Sbjct: 404 FEVHDTGIGIPKNKISHLFKAFSQLDSTSHRKFGGSGLGLIISEKLVSLMNGSIEVKSKE 463 Query: 799 AKGTL 803 KG++ Sbjct: 464 GKGSI 468 >gi|71909071|ref|YP_286658.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB] gi|71848692|gb|AAZ48188.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB] Length = 1055 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 124/224 (55%), Gaps = 9/224 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTP+ AI+G + + + PR +Y + I + +L I+ND+ Sbjct: 326 KSIFLANMSHEIRTPMNAILGMAYLALKSKL----PPRQHDYVSKIHSAARSLLGILNDI 381 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF--ANNIPRILADLR 702 LD SKIE+GK+ L ++ + A+ +VQ K+I + F + ++ +L D Sbjct: 382 LDFSKIEAGKVALEAVLFDIETVLQNALFMVQQKVEGKQIELILDFKPSRSMRFLLGDPL 441 Query: 703 SVKQIALNILSNAIHFTPSGG-QIIIS--TTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759 + Q+ +N+LSNA+ FT G ++++S + + RV DTG+GM+ ++ + + Sbjct: 442 RLGQVLINLLSNAVKFTERGHVRLVVSEAACDGATSTISFRVEDTGIGMSPEQVGRLFQE 501 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 F Q S + GTGLGL ++K +V A G+ + ST KG++ Sbjct: 502 FSQADGSTTRKYGGTGLGLAISKRLVAAMSGEIGVESTLGKGSV 545 >gi|325914828|ref|ZP_08177163.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC 35937] gi|325538919|gb|EGD10580.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC 35937] Length = 1056 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 125/229 (54%), Gaps = 3/229 (1%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S +KS+FLA +SHE+RTPL + + S+++ + + G L +P ++YA I S N +L ++ Sbjct: 363 SRYKSEFLANMSHELRTPLNSALILSKLLADNKDGTL-SPDQVKYAQAILSSNNDLLALI 421 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILAD 700 ND+LD+SKIE+G + L E V+ + + A +K + + P +++ D Sbjct: 422 NDILDLSKIEAGHVELADETVATSSVLQRLRDTFEPLARQKGLTLEIGADAGAPTQLVVD 481 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 + ++QI N+L+NAI FT G + ++ + V+ +V DTG+G+ + E + F Sbjct: 482 NQRLQQILKNLLANAIKFTERG-TVSLAIQAGAPGRVLFKVNDTGIGIAREQTEVIFEAF 540 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q S + R GTGLGL +++ + G + S P +G+ + P Sbjct: 541 RQADGSTRRRYGGTGLGLSISRDLAQRMGGSISVDSEPGRGSCFTLEVP 589 >gi|300981268|ref|ZP_07175445.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 200-1] gi|300307632|gb|EFJ62152.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 200-1] gi|324013106|gb|EGB82325.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 60-1] Length = 593 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 188/398 (47%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 214 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 273 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 274 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 326 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 327 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 381 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q P+ + EY + + + + + ++ LL+ S+ Sbjct: 382 AHEVRNPLTAIRGYVQILRQQTRDPI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 437 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 438 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL 493 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 494 INAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLSLQKKIFDPFF------TTKAS 547 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 548 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 585 >gi|302546427|ref|ZP_07298769.1| sensor histidine kinase/response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302464045|gb|EFL27138.1| sensor histidine kinase/response regulator [Streptomyces himastatinicus ATCC 53653] Length = 1432 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 81/295 (27%), Positives = 152/295 (51%), Gaps = 26/295 (8%) Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE-------SSHKSDFLAR 591 +S+ II S S + +E +Q N+L + E++ S +KS+FLA Sbjct: 866 VSINTIIANARTESLLSESQRLTTELRQRSNELQRSNAELEEKAALLATASQYKSEFLAN 925 Query: 592 VSHEIRTPLTAIIGFSEVIKN---QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 +SHE+RTPL +++ + ++ + QR +P+ +++A I RSG+ +L ++ND+LD+S Sbjct: 926 MSHELRTPLNSLLILARLLADNADQRL----SPQEVQFATTIHRSGSDLLQLINDILDLS 981 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQI 707 KIE+G+M++ + + L + + + + A ++ + + ++PR L +D + ++QI Sbjct: 982 KIEAGRMDVRPKKLPLMKLLDYVHATFRPLAIDRGLSFEIAVGEDVPRELYSDEQRIQQI 1041 Query: 708 ALNILSNAIHFTPSGG-----------QIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 N+LSNA+ FTPSGG + T ++ V V+DTG+G+ + +L Sbjct: 1042 LRNLLSNALKFTPSGGVKLRVERAVGTEFQEETLRDADAVVAFSVKDTGIGIASEKLPVI 1101 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + F Q + + GTGLGL +++ + G+ S G+ P + Sbjct: 1102 FEAFQQSDGTTSRKYGGTGLGLSISREIAGMLGGRIIAESEQGVGSCFTFYVPAH 1156 >gi|298527776|ref|ZP_07015180.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511428|gb|EFI35330.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 949 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 78/258 (30%), Positives = 130/258 (50%), Gaps = 14/258 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K + +L A EK + KS FLA +SHE+RTP++ +IG S ++ L Sbjct: 553 DVTEKKAGERQLLKAIAETEKANQLKSRFLANISHEVRTPISGVIGLSSML-------LK 605 Query: 620 NPRYIEYANYIDRSGNL---VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + I NL +L I+N++LD SK+ESG +L LD + + Sbjct: 606 TSADDDQKRMIQNIANLSEYLLQIINEILDFSKLESGSYSLEQHDFDLDSMFESIAAALC 665 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 EK + + +++P + D S+K+I +N+ +NA+ FT +G I+ ++ ++ Sbjct: 666 SQVQEKNVEFKVLIEDDVPVHLRGDGYSLKRILVNLTANAVKFTDAGNVILRASLLNRSK 725 Query: 736 ---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 E++ V DTGVG+ E +PF Q R GTGLGL + K++V+ G Sbjct: 726 DRLEILFVVFDTGVGVPAAIQETIFEPFTQAEGGFSRRYGGTGLGLAICKSLVEMMGGHI 785 Query: 793 YIFSTPAKGTLIEIIFPL 810 ++ STP +G+ + P Sbjct: 786 WMESTPGEGSSFFVRIPF 803 >gi|241202805|ref|YP_002973901.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856695|gb|ACS54362.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 760 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 133/263 (50%), Gaps = 15/263 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D+++ + A++ AE S+ KS LA VSHE+RTPL+ I+G + +I R Sbjct: 218 RDVTDERLIAQGREEARQKAEYNSAAKSRLLATVSHEVRTPLSGILGMTHLIAETRL--- 274 Query: 619 GNPRYIEYANY---IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 E NY I +SG+ + +V DLLD S IE G+ LH SL + + + ++ Sbjct: 275 ----TQEQQNYLANIRQSGHALTQLVEDLLDFSTIEVGRFALHPRSESLRKLLESVVEML 330 Query: 676 QLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A+EK I I + ++++P ++ D ++Q+ N++ NA+ FT GG I + Sbjct: 331 AHRAHEKGIEIGATVSSDVPENMSFDPARLRQVLFNVIGNAVKFTQVGGVFI--RVSLDD 388 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +++ + V D+G GMT E + F Q S + GTGLGL ++ ++ G + Sbjct: 389 DDLSITVTDSGPGMTTEEQARVFGEFEQ-GGSVVDKSSGTGLGLAISARIMREFNGALTV 447 Query: 795 FSTPAKGTLIEIIFPL-YDTSHP 816 S +G+ I FP+ D+ P Sbjct: 448 ASEKGRGSEFTICFPVDIDSERP 470 >gi|37526197|ref|NP_929541.1| virulence sensor protein BvgS precursor [Photorhabdus luminescens subsp. laumondii TTO1] gi|30314690|emb|CAD52875.1| Pvp sensor [Photorhabdus luminescens subsp. laumondii] gi|36785627|emb|CAE14577.1| Virulence sensor protein BvgS precursor [Photorhabdus luminescens subsp. laumondii TTO1] Length = 1203 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 91/262 (34%), Positives = 132/262 (50%), Gaps = 18/262 (6%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K +L + AE S KSDFLA +SHEIRTPL AIIG ++ ++ P Sbjct: 695 DVTERKLLAQELRQERDKAELASLEKSDFLAHMSHEIRTPLQAIIGILDLEVKKQTQP-S 753 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P +I + I G I+ D+LD SKIESG+M L+ +P SL + ++ A Sbjct: 754 TPLHIAWQAAISLQG-----IIGDVLDFSKIESGRMVLNLKPESLQVILENCVATFSHRA 808 Query: 680 NEKRILIRTSFANNIPRI---LADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----- 731 EK + F ++P L D V QI N+L NAI FT GG + IS ++ Sbjct: 809 KEKELFFTYQF--DLPSEYYHLLDATRVTQIINNLLGNAIKFTEQGG-VQISASYQLIPE 865 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + +E+ L V DTG G+ E + P+ Q+ GTGLGLP++ +V+ G Sbjct: 866 SQQDEITLVVADTGCGIPETMYEAVLLPYVQV-TQHNGGKTGTGLGLPISVQLVELMGGN 924 Query: 792 FYIFSTPAKGTLIEIIFPLYDT 813 I P+ G + ++ PL T Sbjct: 925 LKITGAPSGGAQVTVMLPLTRT 946 >gi|288942367|ref|YP_003444607.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897739|gb|ADC63575.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 721 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 115/400 (28%), Positives = 181/400 (45%), Gaps = 44/400 (11%) Query: 443 NKRKMEIEVMQLCSILEATSD--GIAIINREGIILSTNRAVSKLFGYPVE-DILRKPFTV 499 ++R+ E L +++E++SD GIA ++R G+ + N A L G E DI Sbjct: 215 DRREAETRARDLAAVVESSSDFIGIAGLDRRGLYI--NPAGRSLVGLDAEQDITEIRIED 272 Query: 500 F-----LEQNTPSVMNHYLTE-ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 F LEQ S++ T + + R G + +LRI Sbjct: 273 FFMPEDLEQLRQSILPAMETAGRWAGEFR--FRHFVTGEPIDVFYDALRIDDPNTGRPLH 330 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y+ DI K + L A + K +FLA + HE+R P+ I E+++ Sbjct: 331 YATVTRDIRTEKAAEQALREADR-------RKDEFLAVLGHELRNPMAPIRHAVEILRA- 382 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G G+PR +DR + +++DLLD+S+I G++ L EPV L Sbjct: 383 -LGVDGDPRIRWAIEVLDRQTAHMGRLLDDLLDVSRIVQGRIEL--EPVEL-----RVRE 434 Query: 674 LVQLYANEKRILI---RTSFANNIP----RILADLRSVKQIALNILSNAIHFTPSGGQII 726 LVQ A+ R L+ R F +P R+L D + QI LNIL NA ++TP GG+I Sbjct: 435 LVQQAADGVRALMEEHRHRFVCRLPAPGWRVLGDPVRLSQILLNILVNAANYTPPGGEIR 494 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 I + + V+++VRD G GMT +L+ F + P++ G GLGL +A+ + D Sbjct: 495 IDS-RIEGDSVLIQVRDNGQGMTAEQLDSLFGLFTRGPHAGDADSGGLGLGLAIARRLAD 553 Query: 787 ANMGKFYIFSTP-AKGTLIEIIFPLYDTSH------PHDC 819 + G S +GT + + P++ + P DC Sbjct: 554 LHGGCLEARSEGLGRGTELCLRLPIFTCARSANLNEPPDC 593 >gi|225026156|ref|ZP_03715348.1| hypothetical protein EUBHAL_00397 [Eubacterium hallii DSM 3353] gi|224956516|gb|EEG37725.1| hypothetical protein EUBHAL_00397 [Eubacterium hallii DSM 3353] Length = 958 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 131/253 (51%), Gaps = 13/253 (5%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + L A + AE + K++FL+ +SH+IRTP+ AI+G + + R IE Sbjct: 430 ESRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMNAIVGLTAIAGA---NVESQDRVIE 486 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I S +L ++N++LD++ IESGKM L E +L E V I+L + +E + Sbjct: 487 CLGKITESSRHLLGLINEVLDMACIESGKMTLAQEDFNLSELVDNLITLTKPVLDEHKHN 546 Query: 686 IRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---- 739 N+I + D ++Q+ +N++SNAI +TP GG II S N L Sbjct: 547 FDIHI-NHIEHEDVCGDSLRIQQVFVNLMSNAIKYTPDGGNIIFSIEEKPNGFSELGCYE 605 Query: 740 -RVRDTGVGMTNYELEKAM-KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + D G+GM+ E +K M PF + + + R +GTGLG+ +++ +V+ G + ST Sbjct: 606 FTIEDNGIGMSP-EFQKIMFDPFSRADDHRTTRVQGTGLGMAISRNIVNLMNGTIKVDST 664 Query: 798 PAKGTLIEIIFPL 810 KGT I + L Sbjct: 665 LHKGTKITVTIYL 677 >gi|170746662|ref|YP_001752922.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170653184|gb|ACB22239.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 974 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 79/250 (31%), Positives = 130/250 (52%), Gaps = 5/250 (2%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + E KQ + L AK+ AE+ S KS FLA +SHE+RTPL AIIGF+ ++ + L Sbjct: 454 VIERKQAEESLRQAKEAAEEASRAKSSFLANMSHELRTPLNAIIGFTRLVMRRAKDVLPV 513 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ-LYA 679 ++ E I S +L ++N +LD++K+E+G+M + +L+ + + V+ L Sbjct: 514 KQF-ENLEKILASSEHLLSLINSILDLAKVEAGRMEVKPSDFALEPVLDLCLRTVEPLVK 572 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 NE L+R + P + D ++QI +N+LSNAI FT +G + + +E + Sbjct: 573 NEGVRLVR-DVRDPPPMLRTDEEKLRQILINLLSNAIKFTEAGS--VTLRVRSVDEGIEF 629 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ L + F Q+ NS GTGLGL ++ + G+ + S Sbjct: 630 AVMDTGIGIPAGALSAIFEEFHQVDNSATRSHSGTGLGLAISHRLARLLGGRIDVESREG 689 Query: 800 KGTLIEIIFP 809 +G+ + P Sbjct: 690 EGSTFTLTIP 699 >gi|283851239|ref|ZP_06368522.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573408|gb|EFC21385.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 710 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 79/278 (28%), Positives = 134/278 (48%), Gaps = 23/278 (8%) Query: 542 RIIIK---KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 RI+ K KLP + M D++E + + L+ A + AE + K+ FLA +SHEIRT Sbjct: 271 RIMYKTAHKLPDAPYIIEAMVDVTELMRTRRNLTRAMEAAEAANRAKTQFLATMSHEIRT 330 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 P+ ++G +E+ P EY + +S +LDI+ND+LD S+IE+G+M L Sbjct: 331 PMNGVMGMTELALQTDL----TPEQREYLDLARQSALSLLDIINDILDFSRIEAGRMELA 386 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIH 717 P SL + + L A + +R + A P ++ D + Q+ N++SN + Sbjct: 387 RAPFSLRRTLGSCLRLFDNLAARQGNDLRLAVAQEAPDGLVGDAGRLSQVIANLVSNGLK 446 Query: 718 FTPSGG-QIIISTT------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 FT G ++ + T H + + V DTG+G+ + + F Q+ Sbjct: 447 FTRDGSVRVTVDTAPPLHCPLGPERGHAAT--FLFSVSDTGIGIPRDKHDHIFDYFTQLD 504 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GTGLGL +++ +V G+ ++ S P +G+ Sbjct: 505 AGLSREAGGTGLGLSISRNLVALMGGRIWVESEPNRGS 542 >gi|239994497|ref|ZP_04715021.1| putative sensor protein [Alteromonas macleodii ATCC 27126] Length = 1023 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 111/411 (27%), Positives = 196/411 (47%), Gaps = 46/411 (11%) Query: 441 RINKRKMEIEVM--QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 R N + +E+ + + +I+ + D I ++ G++ S N A LFG P + IL ++ Sbjct: 352 RSNSKNIELAKVRGESVAIIAISKDAIFSVDSAGVVKSWNMAAESLFGIPSQLILNHHYS 411 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK--LLSLRIIIKKLPFSSCYSL 556 F EQ + + LT+ + T + KEE L++ I + S ++ Sbjct: 412 SF-EQLSLLGLESVLTK---GGKQSTFTTPYIDDEKEEHTLLITASTIWGEQSQFSGVAV 467 Query: 557 TMHDISEWKQEKN------------------KLSHAKKIAEKESSHKSDFLARVSHEIRT 598 + D+++ ++ K+ +L A + A K SS KS F++ +SHE+RT Sbjct: 468 VIRDVTDERKAKDAIERVNLKLEEKVVSRTKELVEATQEARKASSVKSSFISNISHEMRT 527 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM--- 655 PL ++G ++K Q PL N + + + ++ S N + ++ND+LD+SKIE+GK+ Sbjct: 528 PLNGVVGSLSLLKCQ---PL-NEKAEQLVSMMEISCNNLSVLINDVLDLSKIEAGKLDIN 583 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP--RILADLRSVKQIALNILS 713 N +F+P++L E++++ + V+ + ++L+ T+ +P I +D + QI N+L+ Sbjct: 584 NQYFDPLALIESIAKVFA-VKAASKGLQLLVDTT---GLPPVEINSDPHRINQILSNLLN 639 Query: 714 NAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 NAI FT G Q +S +++ V DTGVG+ K F Q S + Sbjct: 640 NAIKFTEEGHIKLQASLSDVDAGTQQLHFSVCDTGVGIAQENQPKLFTAFTQADASVATQ 699 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL----YDTSHPH 817 GTGLGL + K + G S G+ L YD++ H Sbjct: 700 YGGTGLGLSICKQLSQLMGGDITFNSEVDIGSTFSFFVTLPETTYDSAFEH 750 >gi|149180956|ref|ZP_01859457.1| two-component sensor histidine kinase [Bacillus sp. SG-1] gi|148851240|gb|EDL65389.1| two-component sensor histidine kinase [Bacillus sp. SG-1] Length = 607 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 98/382 (25%), Positives = 176/382 (46%), Gaps = 42/382 (10%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E E +L S+L +DG+ +R+G ++ N +K+ E +L +P L Sbjct: 259 EGERRKLSSVLSYMTDGVIATDRKGRVILINDPAAKMLNVSRETVLSQPLVSLL-----G 313 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR----IIIKKLPFSSCYSLTMHDISE 563 + +Y E DL + I L + +E+ LR +I K+ F + +HDI+E Sbjct: 314 LDENYTFE----DLSNEQDSIILDYSTKEQPYILRANFSVIQKETGFVNGIITVLHDITE 369 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG-NPR 622 EK + DF++ VSHE+RTPLT + + E + + PR Sbjct: 370 --------------QEKIDMERRDFVSNVSHELRTPLTTMRSYLEALAEGAWQDEEIAPR 415 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 ++ D + ++ +VNDLL +SK++S + E + + I ++ N+ Sbjct: 416 FLSVTQ--DETERMI-RLVNDLLQLSKMDSKDYRFNKEWIEFVGFFHQIIDRFEMSKNQN 472 Query: 683 RILIRTSFANNIPR----ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +F +P+ + D + Q+ NI+SNA+ ++P GG I + ++ ++ Sbjct: 473 -----VTFKRQLPKTALFVEIDKDKLTQVLDNIISNALKYSPEGGLIAFNVVE-KDKMIV 526 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V D G+G+ L K + F ++ ++ + GTGLGL +AK M+ A+ G + S Sbjct: 527 VSVSDQGLGIPQDNLSKIFERFYRVDKARSRQMGGTGLGLAIAKEMISAHGGNIWAESKE 586 Query: 799 AKGTLIEIIFPLYDTSHPHDCI 820 KGT I P YD++ + + Sbjct: 587 GKGTTISFSLP-YDSTQEDEWL 607 >gi|229090988|ref|ZP_04222212.1| hypothetical protein bcere0021_18060 [Bacillus cereus Rock3-42] gi|228692389|gb|EEL46124.1| hypothetical protein bcere0021_18060 [Bacillus cereus Rock3-42] Length = 444 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 125/251 (49%), Gaps = 13/251 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E + + L+H EK K++F+A +SHEIRTPLT I G+SE +K L Sbjct: 205 GELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKT--VDHLTEE 262 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + I + ++ +V +LLD S+++S NL+ + V L + + E I + A E Sbjct: 263 EIKQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEE 322 Query: 682 KRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K++ F I RI + D +KQI LNI+ NAI ++ G++ I T + VI Sbjct: 323 KKM----QFIKTIERIELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVI- 377 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 +V+D G+G+ L + F QI N G GLGL + K MV+ + G I S Sbjct: 378 KVKDDGIGIAKEHLPYIEQSFYQINNHTT----GAGLGLAIVKKMVELHGGTINIISKEG 433 Query: 800 KGTLIEIIFPL 810 GT I I PL Sbjct: 434 IGTTILIKLPL 444 >gi|90578600|ref|ZP_01234410.1| hypothetical protein VAS14_02823 [Vibrio angustum S14] gi|90439433|gb|EAS64614.1| hypothetical protein VAS14_02823 [Vibrio angustum S14] Length = 700 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 75/255 (29%), Positives = 129/255 (50%), Gaps = 7/255 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T +I+ K+ L A+K AE + KS F+A +SHEIRTPL A++G E + Sbjct: 301 TAKNITSRKKRLFDLQEAQKQAETANKAKSQFIAMMSHEIRTPLNAVLGLMESLS---LS 357 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L N + + + + +D+S +L+L I+ND+LD+S+IESG L +++ E++ + Sbjct: 358 GLNNKQNL-WLSQMDQSAHLLLAIINDILDLSRIESGSFRLFNSDINVVESIRLVADQLA 416 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A + + + + IP+ I D + Q+ N++ NA+ FT G ++ N Sbjct: 417 PQAAKNNVQFQCEIDDAIPKQIYGDKNRIAQVLFNLIGNAVKFTSIGSVRVVVRKVDDNI 476 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 E+ V DTG+G+ PF Q S R GTGLGL +++ +++ G + Sbjct: 477 EI--AVIDTGIGIAKDAQANIFNPFHQADGSITRRYGGTGLGLAISQHLIEKMNGTISLE 534 Query: 796 STPAKGTLIEIIFPL 810 S G+ ++ P+ Sbjct: 535 SELGTGSCFKVSIPI 549 >gi|315285841|gb|EFU45281.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 110-3] gi|315298047|gb|EFU57316.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 16-3] Length = 593 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 188/398 (47%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 214 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 273 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 274 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 326 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 327 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 381 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q P+ + EY + + + + + ++ LL+ S+ Sbjct: 382 AHEVRNPLTAIRGYVQILRQQTRDPI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 437 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 438 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL 493 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 494 INAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLSLQKKIFDPFF------TTKAS 547 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 548 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 585 >gi|270294471|ref|ZP_06200673.1| two-component system sensor histidine kinase [Bacteroides sp. D20] gi|270275938|gb|EFA21798.1| two-component system sensor histidine kinase [Bacteroides sp. D20] Length = 927 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 137/256 (53%), Gaps = 18/256 (7%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +DI+E K+ + L AK+ AE KS FLA +SHEIRTPL AI+GFS ++ G + Sbjct: 685 YDITELKETEAMLIEAKEKAETADRLKSAFLANMSHEIRTPLNAIVGFSSLMGET--GDM 742 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 R +Y I+ + +L+L +++D+LD+SKIE+G + + + ++ + + +++ Sbjct: 743 EEKR--QYMAIIEENNDLLLQLISDILDLSKIEAGTFDFVEKELDVNMLCEDIVRFMKMK 800 Query: 679 ANEKRILIRTSFANNIP--RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A + F ++P RI++D + Q+ N ++NAI FT +G I + +E Sbjct: 801 AKPG---VEVLFDRHLPECRIVSDRNRLNQVIANFVNNAIKFTTAGS---IRVGYNKVDE 854 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 LR V DTG+G+ E E + F + GTGLGL ++K++++ G + Sbjct: 855 THLRFYVADTGLGI---EPEMQAQIFDRFIKLNTFV-HGTGLGLSISKSIIEQLGGTIGV 910 Query: 795 FSTPAKGTLIEIIFPL 810 S P KG+ + P+ Sbjct: 911 DSEPGKGSCFWFVLPI 926 >gi|237749008|ref|ZP_04579488.1| two-component system sensor histidine kinase [Oxalobacter formigenes OXCC13] gi|229380370|gb|EEO30461.1| two-component system sensor histidine kinase [Oxalobacter formigenes OXCC13] Length = 825 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 76/253 (30%), Positives = 138/253 (54%), Gaps = 12/253 (4%) Query: 566 QEKNKLSH-AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +E++ + H A + AE+ + KS+FL+R+SH+IRTP+ AIIG + + R Sbjct: 294 EERSVMLHDALQTAERANRSKSEFLSRMSHDIRTPMNAIIGMTAIAGTH---IDDRDRVK 350 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ--LYANEK 682 + I S L+L ++N++LD+S+IESG + + E L++ + ++++Q + A + Sbjct: 351 DCLGKITLSSKLLLGLINEVLDMSRIESGNLAITEEEFCLNDMLQNLVTILQPSVMAKQH 410 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVI 738 IR + ++ D + ++Q+ LNILSNAI +TP+GG+I+ ++T+ + Sbjct: 411 TFDIRAHHLRH-ENVIGDPQHIQQVFLNILSNAIKYTPAGGKIMFDIREKPSNTAGYGLY 469 Query: 739 -LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 D G GM +EK PF + ++ + +GTGLG+ +++ +V G + ST Sbjct: 470 EFTFEDNGYGMKPEFIEKLFSPFERADDADVLAVQGTGLGMAISRNIVKLINGDIKVKST 529 Query: 798 PAKGTLIEIIFPL 810 KG+ + PL Sbjct: 530 YRKGSTFTVELPL 542 >gi|163814661|ref|ZP_02206050.1| hypothetical protein COPEUT_00812 [Coprococcus eutactus ATCC 27759] gi|158450296|gb|EDP27291.1| hypothetical protein COPEUT_00812 [Coprococcus eutactus ATCC 27759] Length = 1297 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 120/229 (52%), Gaps = 15/229 (6%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + KSDFLAR+SHEIRTP+ IIG +EV R + R IE ID + +L I+ Sbjct: 920 AQAKSDFLARMSHEIRTPMNGIIGMTEVA--LRPDQTEDKR-IECLKKIDSASGYLLGIL 976 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI---- 697 ND+LD+SKIESGKM L + S+ + + S++ NEK I +F NI + Sbjct: 977 NDVLDMSKIESGKMKLVIDKCSIPDMMKNIDSIMDAKMNEKDI----TFVQNITLLHDWY 1032 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYEL 753 D + QI +N+LSNA+ ++ GG + ++ +E + V+D G+G+ + Sbjct: 1033 YGDELRLNQILVNLLSNAVKYSNLGGHVDLTVKELPVDEKHSDIYFAVKDNGIGIPESKQ 1092 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + + F Q +S R +GTGLGL ++ +V + S KG+ Sbjct: 1093 QLIFQRFEQADDSANARKQGTGLGLAISSRLVHMMDSDIKVASEVGKGS 1141 >gi|156934002|ref|YP_001437918.1| hypothetical protein ESA_01828 [Cronobacter sakazakii ATCC BAA-894] gi|156532256|gb|ABU77082.1| hypothetical protein ESA_01828 [Cronobacter sakazakii ATCC BAA-894] Length = 893 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 79/260 (30%), Positives = 128/260 (49%), Gaps = 5/260 (1%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI+ K+ + A A + KS FLA +SHEIRTP+ I+G +++ + Sbjct: 241 TLQDITRRKEAELISREAANAARAANEAKSAFLANMSHEIRTPMNGILGMTQLCLDTDL- 299 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 N EY + S +L I++D+LD SKIE+GK+ LH E V+L + + + Sbjct: 300 ---NSEQREYLTLVMSSAQSLLHIIDDILDFSKIEAGKIVLHEEYVALRPFIQSLVRPLM 356 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A+EK+I + +P+ L D+ ++Q+ N+LSNA+ FT G ++ Sbjct: 357 PLASEKQIELLVEVDERVPQTLRVDVVRLRQVLTNLLSNALKFTHQGEILLAVAPGPQPG 416 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 E RVRD+G+G+ + + + F Q S R GTGLGL ++ +V G + Sbjct: 417 EWRFRVRDSGIGIPPEKQQVIFEAFSQADTSTTRRYGGTGLGLTISARLVAMMGGLLTVA 476 Query: 796 STPAKGTLIEIIFPLYDTSH 815 S +G+ PL + Sbjct: 477 SEANQGSEFSFTLPLQSAAQ 496 >gi|148548955|ref|YP_001269057.1| histidine kinase [Pseudomonas putida F1] gi|148513013|gb|ABQ79873.1| histidine kinase [Pseudomonas putida F1] Length = 935 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 129/255 (50%), Gaps = 9/255 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS KQ + L A++ A+ + K+ FLA +SHEIRTPL ++G E++ Sbjct: 434 DISARKQIEAALEDARRAADTANEAKTQFLATMSHEIRTPLYGVLGTLELLSRTVL---- 489 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + +Y I+ S + +L ++ D+LD+SKIE+G++ L S + V E + A Sbjct: 490 DAQQRDYLRAIEGSSSTLLQLICDVLDVSKIEAGQLALELSEFSAPDLVREVVQGYSAAA 549 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 K + + + +P ++ D+ ++QI N+LSNA+ FT G ++ + + E Sbjct: 550 RSKGLQLYSCLDPRLPEHLIGDVNRIRQILNNLLSNAVKFTDCGRVVLRARLLNRDGERS 609 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++ +V DTG G+ + +PF Q Q+ GTGLGLP+ + + G+ + Sbjct: 610 CLLWQVSDTGKGIAEQDQPFIFEPFYQTEGHSQVI-PGTGLGLPICQRLTQLMNGQLRLV 668 Query: 796 STPAKGTLIEIIFPL 810 S G+ + PL Sbjct: 669 SELGLGSSFSLTLPL 683 >gi|330821538|ref|YP_004350400.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia gladioli BSR3] gi|327373533|gb|AEA64888.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia gladioli BSR3] Length = 565 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 88/271 (32%), Positives = 135/271 (49%), Gaps = 18/271 (6%) Query: 550 FSSCYSLTMHDISEWKQ---EKNKLSHAKKIAEKESSHKSD----FLARVSHEIRTPLTA 602 SS T+ DI+ KQ E + A+K A +ES + F+A VSHE+R+PL A Sbjct: 303 LSSVLGFTL-DITARKQSELETQATAAAEKRAREESERLATAMDHFIATVSHELRSPLNA 361 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYAN-YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I+ + E+++ P + A I+R+G + +V+DLLD I +GK+++ P Sbjct: 362 ILSWCELMRRS-----PEPALVTRAGEVINRNGRQLAHMVDDLLDSGAIVTGKLSVLPRP 416 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V L I +++ A K + + P ++AD +KQI N+LSNA+ FTP Sbjct: 417 VDLGALTGIVIEDMRVIAEAKGLALIAERLRPAP-VMADEHRIKQIVWNLLSNAVKFTPQ 475 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 G I + T E+V L VRDTG G+ LE+ + F Q + R G GLGL LA Sbjct: 476 GS--IEVSIETVGEQVELVVRDTGRGIDPSMLERVFERFQQSAADGEGRVAGLGLGLWLA 533 Query: 782 KAMVDANMGKFYIFS-TPAKGTLIEIIFPLY 811 + +++ G+ S P G + P+Y Sbjct: 534 RNLLERQGGEIVAESEGPGLGATFRVRLPVY 564 >gi|317499096|ref|ZP_07957375.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316893616|gb|EFV15819.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 762 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 81/256 (31%), Positives = 131/256 (51%), Gaps = 11/256 (4%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E Q K A +++ S KSDFLA +SH+IRTP+ AI+G + +I++ GN Sbjct: 347 TELTQAKRAAEQAFEVSNNASQSKSDFLASMSHDIRTPMNAIMGITSLIRHDA----GNK 402 Query: 622 -RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + IEY + ID S +L I+ND+LD+SKIE+GK + S+ E + E ++ Sbjct: 403 DKVIEYVDKIDVSAQHLLGIINDVLDMSKIEAGKTVFSYSDFSILEFMQEIQTMFCPQTE 462 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIII-----STTHTSN 734 EK + N + + +D + QI N+LSNA+ +T GG+I T ++ Sbjct: 463 EKHQSLVIHHENIVHEWVNSDYVHLMQIFSNLLSNAVKYTQKGGKIQFLVEECETKSSAY 522 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + V D GVGM+ +K F + +S + +GTGLG+ + K +++A G + Sbjct: 523 AKYHFAVIDNGVGMSEDFKDKIFDTFTREESSLTNKIQGTGLGMAITKNLIEAMGGTIDV 582 Query: 795 FSTPAKGTLIEIIFPL 810 S G+ E+ L Sbjct: 583 DSELGLGSCFEVFMDL 598 >gi|269966938|ref|ZP_06181010.1| sensory box sensor histidine kinase/response regulator [Vibrio alginolyticus 40B] gi|269828421|gb|EEZ82683.1| sensory box sensor histidine kinase/response regulator [Vibrio alginolyticus 40B] Length = 1128 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 88/317 (27%), Positives = 152/317 (47%), Gaps = 18/317 (5%) Query: 508 VMNHYLTEILS---LDLRQTLEKITLGSTKEEKLLSLR---IIIKKLPFSSCYSLTMHDI 561 + +HYL+ ++ L L EK++ G + ++R I L F I Sbjct: 370 IASHYLSNFITSPLLKLTWVAEKVSAGDLDDTSFNTVRKDEIGRLALSFERMQRSIREKI 429 Query: 562 SEWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 K++ +L +I +K++ K +FLA SHE+RTPL ++G +E + + Sbjct: 430 QTIKKQNEELESNIQIIQKQNEELQLADKLKDEFLATTSHELRTPLHGMVGIAETLASGA 489 Query: 615 FGPLGNPRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + P +Y + I +SG + ++V+DLLD K+ G M++ VSL A + Sbjct: 490 NGAI--PASQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLGSATRLVLE 547 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 L K I I ++ + AD + ++Q+ N++ NAI +T S G+I+IS + Sbjct: 548 LSSHLLGSKTIRIINQVPADLKAVSADPQRLEQVLYNLIGNAIKYT-SEGKIVIS-ANVV 605 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ V ++V DTG G+ +LE +P Q +G GLGL +++ +++ G Y Sbjct: 606 DDHVRVQVVDTGQGIPAEQLEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLY 665 Query: 794 IFSTPAKGTLIEIIFPL 810 + S P GT PL Sbjct: 666 VSSQPMVGTTFSFTLPL 682 >gi|297197242|ref|ZP_06914639.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083] gi|297146642|gb|EFH28254.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083] Length = 1424 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 132/263 (50%), Gaps = 19/263 (7%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I + +QE + +A K +KS+FLA +SHE+RTPL + + + P N Sbjct: 841 IEQARQELETRAQQLSLASK---YKSEFLANMSHELRTPLNS---LLILAQLLAQNPSRN 894 Query: 621 --PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P+ +EYA I +G+ +L ++ND+LD+SK+E+GKM++ E V L + + + + Sbjct: 895 LTPKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGKMDVAPERVPLRQLLEYVEATFRPM 954 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG----------QIII 727 +K + + A P +L D ++QI N+LSNA+ FT GG + + Sbjct: 955 TTQKSLEFTVATAPGTPADLLTDDSRLRQILRNLLSNAVKFTEQGGVELRIEPAADREVP 1014 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 S H V RV+DTG+G+ +LE F Q + + GTGLGL + + + Sbjct: 1015 SGVHRGGPIVAFRVKDTGIGIPQQQLETIFGAFQQADGTTSRKYGGTGLGLSITREIAHL 1074 Query: 788 NMGKFYIFSTPAKGTLIEIIFPL 810 G + STP +G+ + P+ Sbjct: 1075 LGGAVTVDSTPGQGSTFTLYLPV 1097 >gi|156053696|ref|XP_001592774.1| hypothetical protein SS1G_05695 [Sclerotinia sclerotiorum 1980] gi|154703476|gb|EDO03215.1| hypothetical protein SS1G_05695 [Sclerotinia sclerotiorum 1980 UF-70] Length = 2063 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 81/262 (30%), Positives = 130/262 (49%), Gaps = 25/262 (9%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 F +C DI++ K + KL A + K FL+ +SHEIRTPL I G Sbjct: 1324 FGACT-----DINDHKLLETKLKEAME-------SKGKFLSNMSHEIRTPLIGISGMVSF 1371 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 +++ N ++Y N I S + +L+I+ND+LD+SK+++G M L +E V Sbjct: 1372 LQDTTL----NDEQLDYTNTIQSSASSLLNIINDILDLSKVDAGMMKLSYEWFHTRSLVE 1427 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 E +V A KR+ + ++P ++ D ++Q+ LN++ NAI FT G Sbjct: 1428 EVNEMVSTMAITKRLELNYIVDVDVPEMVKGDKFRIRQVLLNVIGNAIKFTTVGEVFTRC 1487 Query: 729 TTHTSNE------EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 + +E E++L + DTG G T E + KPF QI S + G+GLGL + Sbjct: 1488 RVYVDDESPPLVNEIMLEYSIVDTGRGFTKEEADLIFKPFSQIDGSSTRQHGGSGLGLVI 1547 Query: 781 AKAMVDANMGKFYIFSTPAKGT 802 ++ +V + GK + P KG+ Sbjct: 1548 SRQLVQLHDGKMQGTAVPGKGS 1569 >gi|78776617|ref|YP_392932.1| histidine kinase [Sulfurimonas denitrificans DSM 1251] gi|78497157|gb|ABB43697.1| histidine kinase [Sulfurimonas denitrificans DSM 1251] Length = 896 Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 134/237 (56%), Gaps = 17/237 (7%) Query: 576 KIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 KI+ +E+S KS FLA +SHEIRTPL I+GF+E++K+ E+ + I++S Sbjct: 372 KISAQEASEAKSMFLANMSHEIRTPLNGIVGFTELLKDSGL----QQEQSEFVDIIEKSS 427 Query: 635 NLVLDIVNDLLDISKIESGKM---NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 +L+I+N++LD+SKIES K+ N+ F P+ E+ A+ + + A+EK I + Sbjct: 428 ENLLEIINNILDLSKIESNKLEIENILFNPIVEFES---AVEVYAVRASEKHINLGCFID 484 Query: 692 NNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQI-----IISTTHTSNEEVILRVRDTG 745 ++ L D +K+I +N+LSNA+ FT + G I I + ++ V ++D+G Sbjct: 485 PSLEFWLKGDPTKLKEIIINLLSNAVKFTNNAGFINVNIRKIDSDKSTKTRVRFEIQDSG 544 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+T+ + K + F Q S + GTGLGL ++ V+ GK + S A+GT Sbjct: 545 IGVTSEQKSKIFEAFSQADTSITRKYGGTGLGLTISSNFVELMGGKLDLESKLAEGT 601 >gi|226326092|ref|ZP_03801610.1| hypothetical protein COPCOM_03910 [Coprococcus comes ATCC 27758] gi|225205634|gb|EEG87988.1| hypothetical protein COPCOM_03910 [Coprococcus comes ATCC 27758] Length = 394 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 80/257 (31%), Positives = 132/257 (51%), Gaps = 13/257 (5%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYAN 628 +L + + A + S K+ FL +SH+IRTP+ AIIGFS+++ L N + EY Sbjct: 2 ELKKSAEQAREASEAKTRFLFNMSHDIRTPMNAIIGFSDLLGKN----LDNEEKVREYLG 57 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I SGN+++ I++ +L++++IESG L E +L E ++++ K I Sbjct: 58 KIKSSGNILMTIIDQVLEVARIESGTSILKTEAANLSELFYSVNTVLESDIQMKGI--HC 115 Query: 689 SFANNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVR 742 S N+ A D +++I LNI+SNAI +TP G I ++ T+ ++ + Sbjct: 116 SIDTNVQHKYAFCDKTKLQEIYLNIMSNAIKYTPDGHAIHVTINETNFDDKKARYVFVCE 175 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+GM + L F + + + + GTGLGL + K+ V+ G+ ++ S P KGT Sbjct: 176 DTGIGMASEYLPHIFDEFSREHTATENKVSGTGLGLSIVKSFVELMNGRIHVESKPGKGT 235 Query: 803 LIEIIFPLYDTSHPHDC 819 + PL S C Sbjct: 236 KFTVEIPLELASEGDIC 252 >gi|261407834|ref|YP_003244075.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10] gi|261284297|gb|ACX66268.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10] Length = 893 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 80/258 (31%), Positives = 129/258 (50%), Gaps = 12/258 (4%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 +AK++ EK S +KS FLA +SHE+RTPL +++ S+++ + G L YA I Sbjct: 486 YAKEL-EKSSKYKSQFLANMSHELRTPLNSMLILSQILAENKQGNLTEEEQ-HYATVIHN 543 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG+ +L+++ND+LD+SK+E+GKM + + V+L E A K + A+ Sbjct: 544 SGSELLNLINDILDLSKVEAGKMQIEMDLVNLTELPELMEGYFSKSAESKNLEFDIEVAD 603 Query: 693 NIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---------QIIISTTHTSNEEVILRVR 742 ++P ++ +D + QI N+LSNAI FT SG I+ S S + + V Sbjct: 604 DLPDMMYSDGMRLHQILRNLLSNAIKFTESGSVKLKVKKMNSIVTSDFIISGDVIAFSVE 663 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ L+ + F Q + R GTGLGL ++ + G + S G+ Sbjct: 664 DTGIGIAAEHLQPIFEAFQQGEETTARRFGGTGLGLSISLHLAKLLGGYITVESEEGIGS 723 Query: 803 LIEIIFPLYDTSHPHDCI 820 + PL D + Sbjct: 724 TFILYLPLVTEGGAVDSL 741 >gi|158338757|ref|YP_001519934.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158308998|gb|ABW30615.1| two-component hybrid sensor and regulator, putative [Acaryochloris marina MBIC11017] Length = 834 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 134/244 (54%), Gaps = 10/244 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q L A++ A++ + KS+FLA +SHE+RTPL AI+GFS+++ + + Sbjct: 351 EQRTAALEAARQKADQANRAKSEFLASMSHELRTPLNAILGFSQLMSEDQAISTQQQNTL 410 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I+RSG +L+++ND+LD+SKIE+G+ L+ +L + + L A K + Sbjct: 411 Q---IINRSGEHLLELINDVLDMSKIEAGRTTLNPADFNLHGLLQSLYDMFNLKAQSKGL 467 Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIS--TTHTSNEEVIL-- 739 + +++P+ + D ++Q+ +N++ NAI FT +G I + T + E+ L Sbjct: 468 KLALKLDDHLPQFIHGDESKLRQVLINLIGNAIKFTEAGEVSITAGMAEQTGDGELSLTF 527 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V D+G G+ E+E+ PF Q +SQ +GTGLGL ++ V G + S + Sbjct: 528 AVEDSGPGIAPDEVERIFDPFIQAKSSQA--QQGTGLGLAISAQFVRLMKGDISVCSKLS 585 Query: 800 KGTL 803 +G++ Sbjct: 586 RGSI 589 >gi|46581083|ref|YP_011891.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46450504|gb|AAS97151.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|311234760|gb|ADP87614.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1] Length = 1005 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 78/254 (30%), Positives = 135/254 (53%), Gaps = 13/254 (5%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ ++LS AK+ AE + KS+FLA +SHE+RTPL ++G ++++ N Sbjct: 612 ERRRSLHRLSLAKEHAESANRAKSEFLANMSHELRTPLNGMLGMLQLLEAGDLDRDQN-- 669 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 E + SG +L +++D+LD+S+IE+G+M L + S +EAV + + ++A + Sbjct: 670 --ELVHIALDSGRTLLRVLSDILDLSRIEAGRMELRHDRFSPEEAVRQ---VYDMFAQDA 724 Query: 683 RIL-IRTSF-ANNIP-RILADLRSVKQIALNILSNAIHFTPSG--GQIIISTTHTSNE-E 736 RI +R + + +P + D ++QI N+L NA+ FT G G + + T Sbjct: 725 RIRGLRLRWRCDELPCEVWGDGTRLRQILFNLLGNAMKFTHEGTVGVEVCAVRRTEESVR 784 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 ++ V DTG+G+ + L +PF Q+ S R GTGLGL + + +V G + S Sbjct: 785 LLFSVSDTGIGIPHDRLMSIFEPFTQLDGSTTRRYSGTGLGLGIVRRLVHLMGGGLNVES 844 Query: 797 TPAKGTLIEIIFPL 810 +GT + + P Sbjct: 845 ALGEGTAVHVCLPF 858 >gi|332701531|ref|ZP_08421619.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332551680|gb|EGJ48724.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 840 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 97/363 (26%), Positives = 167/363 (46%), Gaps = 21/363 (5%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTE 515 + E + D IA I R+ L N A ++ G P I+ K + + + Sbjct: 319 LAENSPDIIARIGRDMRYLYINPAGGRIRGAPPAHIIGKTVYQLGYTHEFSKRAEKRVAR 378 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSH 573 + S +T E S ++ RI+ ++ S + DI++ K +++L Sbjct: 379 LFSTGKEETFEYEFSSSLTGSRIFQARIVPERDKHGDVESALIISRDITDLKLMESELKA 438 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK+ AE+ + KS FLA +SHEIRTP+ IIG +E+ N Y +S Sbjct: 439 AKEAAEEANRTKSQFLANMSHEIRTPMNGIIGMTELA----LASCANVDCSTYLGMARKS 494 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 +L I+ND+LD++KIESGK+ + ++ + + L A K + N Sbjct: 495 ARNLLGIINDILDLAKIESGKVEIEEYAFDARASLEALFATMALDAERKGLRFDARIDAN 554 Query: 694 IP-RILADLRSVKQIALNILSNAIHFTPSGG-------------QIIISTTHTSNEEVIL 739 +P R+ D R + Q+ N++ NA+ FT GG ++ S + + Sbjct: 555 VPVRLKGDERRLLQVFTNLIGNAVKFTLEGGIAVKVLVADPVSLGLLESCPDPAAVCLFA 614 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ ++ + + F Q+ ++ +GTGLGL ++K +V+ GK ++ S P Sbjct: 615 SVSDTGIGIPADQIGRIFESFAQVGGLAHLKFDGTGLGLSISKRLVELMGGKLWVESEPG 674 Query: 800 KGT 802 KG+ Sbjct: 675 KGS 677 >gi|227887277|ref|ZP_04005082.1| sensory histidine kinase AtoS [Escherichia coli 83972] gi|300983212|ref|ZP_07176489.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 45-1] gi|301048967|ref|ZP_07195956.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 185-1] gi|227835627|gb|EEJ46093.1| sensory histidine kinase AtoS [Escherichia coli 83972] gi|300299218|gb|EFJ55603.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 185-1] gi|300408613|gb|EFJ92151.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 45-1] gi|315292173|gb|EFU51525.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 153-1] Length = 593 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 188/398 (47%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 214 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 273 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 274 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 326 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 327 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 381 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q P+ + EY + + + + + ++ LL+ S+ Sbjct: 382 AHEVRNPLTAIRGYVQILRQQTRDPI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 437 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 438 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL 493 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 494 INAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLSLQKKIFDPFF------TTKAS 547 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 548 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 585 >gi|327480106|gb|AEA83416.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri DSM 4166] Length = 1135 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 71/267 (26%), Positives = 142/267 (53%), Gaps = 10/267 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KNQR 614 L M +I ++ +L AK+ +E ++ KS ++ +SHE+RTPL +I+G+++++ +++ Sbjct: 653 LLMQEIEAHRKTDEQLQKAKEASEAANAAKSRYVTGLSHELRTPLNSILGYAQILLRDEA 712 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P R+ + I RSG +L +++ LLD++KIE+GK+NL ++ E + + + Sbjct: 713 MAP----RHKDALGTIHRSGAHLLSLIDGLLDVAKIEAGKLNLEQSEIAFPEFLQQLRQM 768 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + A EK + +P ++ D + V+QI +N+L NA+ +T G I + ++ Sbjct: 769 IAPQAEEKGLRFHFESQGRMPAVVRGDEKRVRQILINLLGNAVRYT-DAGSITLRASYL- 826 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E + DTG+G+ ++E+ +PF + +Q G GLGL + + + G+ Sbjct: 827 RETATFEIADTGIGIPAEQIERLFQPFERGNPLRQ--DNGLGLGLTITRMLTALMGGELS 884 Query: 794 IFSTPAKGTLIEIIFPLYDTSHPHDCI 820 + S +GT+ ++ L + P + Sbjct: 885 VKSQEGQGTVFQLRLFLSEVRVPQAVV 911 >gi|325972366|ref|YP_004248557.1| Hpt sensor hybrid histidine kinase [Spirochaeta sp. Buddy] gi|324027604|gb|ADY14363.1| Hpt sensor hybrid histidine kinase [Spirochaeta sp. Buddy] Length = 935 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 119/230 (51%), Gaps = 8/230 (3%) Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS FLARVSHEIRTPL I G S +++ + + Y I + + I+ND Sbjct: 317 EKSRFLARVSHEIRTPLNGIRGMSYLLEKTSL----DANQMRYVKTISGATQTMQSIIND 372 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702 +L+ S+++ ++ L P +LD+ + IS+ +K + R + +++P+ ++ D Sbjct: 373 ILEFSRLDEDRIILENIPFALDDVLENCISIESYLIQQKGLHFRLNQPDDVPQHLVGDPT 432 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKP 759 + QI +N+L+NA+ FT +G + T E+ + V+DTG+GM ++E KP Sbjct: 433 RLAQILINLLNNAVKFTEAGSIDLTVQVQTLAEQSCSLSFEVKDTGIGMNEQQMENLFKP 492 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F Q S + G+GLGL + KA+V+ G + S KG+ P Sbjct: 493 FVQANASIHRKYGGSGLGLSIVKALVEKMGGTLTVTSEMGKGSAFTATIP 542 >gi|239624050|ref|ZP_04667081.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522081|gb|EEQ61947.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 862 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 142/261 (54%), Gaps = 13/261 (4%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++K L A K A+ + K++FL+ +SH+IRTP+ AIIG S + + P + Sbjct: 330 EQARQKQALEDACKTAQIANDAKTNFLSSMSHDIRTPMNAIIGMSVIAQANLKAP---EK 386 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + N I+ S +L ++N++LD+SKIESGK++L E +SL E + + + + + A EK Sbjct: 387 IQDCLNKINVSSRHLLSLINEVLDMSKIESGKIDLISETISLPELIEDVMDVFRPLAAEK 446 Query: 683 RILIRTSFANNI--PRILADLRSVKQIALNILSNAIHFTPSGGQII-----ISTTHTSNE 735 ++ + A+++ ++ D ++Q+ +N+LSNA+ +TP GG + + + Sbjct: 447 HQELQVN-ADHVRHENVITDQNRLRQVLVNLLSNAVKYTPDGGCVGLWIREVPSFAKGRG 505 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V D G+GM+ L +PF + + + +GTGLG+ + + +V G + Sbjct: 506 QYEFIVTDNGIGMSEEFLPHVFEPFARAKDPTINQVQGTGLGMAITQNIVRMMNGTIEVR 565 Query: 796 STPAKGT--LIEIIFPLYDTS 814 S P +G+ ++ + F L + + Sbjct: 566 SNPGQGSRFIVAVSFELCEEA 586 >gi|159901418|ref|YP_001547665.1| integral membrane sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159894457|gb|ABX07537.1| integral membrane sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 557 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 89/260 (34%), Positives = 130/260 (50%), Gaps = 16/260 (6%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG-- 616 DI KQ + A+ AE S KS F+A +SHE+RTPL AI+G+++++ G Sbjct: 282 EDIIRRKQAEEIALRAQAAAEAASQAKSMFVATMSHELRTPLNAILGYTQLL---HLGAK 338 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 G + I +G +L +V+++LD SKIE GKMNL V L V E + +VQ Sbjct: 339 ARGQEDVLPQLERIRLAGKHLLTLVSNVLDFSKIEHGKMNLDLGDVQLASLVDEVMGIVQ 398 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A + + T FA+ I +D ++QI N+LSNAI FT +G T +E+ Sbjct: 399 PLAEARFDQLTTEFAST-SLIYSDGGKIRQILFNLLSNAIKFTEAG----TVTLRVWDEQ 453 Query: 737 ------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 +I V DTG+GM +L + KPF Q S GTGLGL L++ + G Sbjct: 454 RAGEPWLIFAVSDTGIGMAPDQLRRLFKPFVQADESTTRTYGGTGLGLALSQQLAAMLGG 513 Query: 791 KFYIFSTPAKGTLIEIIFPL 810 + S P G+ + P+ Sbjct: 514 SISVESCPNVGSTFTLQIPV 533 >gi|47569834|ref|ZP_00240503.1| sensor histidine kinase, putative [Bacillus cereus G9241] gi|47553480|gb|EAL11862.1| sensor histidine kinase, putative [Bacillus cereus G9241] Length = 453 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 126/251 (50%), Gaps = 13/251 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E + + L+H + EK K++F+A +SHEIRTPLT I G+SE +K L Sbjct: 214 GELGELAHSLNHMSEKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKT--VDHLTEE 271 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + I + ++ +V +LLD S+++S NL+ + V L + + E I + A E Sbjct: 272 EIKQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEE 331 Query: 682 KRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K++ F I RI + D +KQI LNI+ NAI ++ G++ I T + + VI Sbjct: 332 KQM----QFIKTIERIELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKSEGQAVI- 386 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V+D G+G+ L + F QI N G GLGL + K MV+ + G I S Sbjct: 387 EVKDEGMGIAKEHLPYIEQSFYQINN----HATGAGLGLAIVKKMVELHGGTINIISKEG 442 Query: 800 KGTLIEIIFPL 810 GT I I PL Sbjct: 443 IGTTILIKLPL 453 >gi|160891180|ref|ZP_02072183.1| hypothetical protein BACUNI_03627 [Bacteroides uniformis ATCC 8492] gi|317481076|ref|ZP_07940155.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|156859401|gb|EDO52832.1| hypothetical protein BACUNI_03627 [Bacteroides uniformis ATCC 8492] gi|316902789|gb|EFV24664.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 940 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 137/256 (53%), Gaps = 18/256 (7%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +DI+E K+ + L AK+ AE KS FLA +SHEIRTPL AI+GFS ++ G + Sbjct: 698 YDITELKETEAMLIEAKEKAETADRLKSAFLANMSHEIRTPLNAIVGFSSLMGET--GDM 755 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 R +Y I+ + +L+L +++D+LD+SKIE+G + + + ++ + + +++ Sbjct: 756 EEKR--QYMAIIEENNDLLLQLISDILDLSKIEAGTFDFVEKELDVNMLCEDIVRFMKMK 813 Query: 679 ANEKRILIRTSFANNIP--RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A + F ++P RI++D + Q+ N ++NAI FT +G I + +E Sbjct: 814 AKPG---VEVLFDRHLPECRIVSDRNRLNQVIANFVNNAIKFTTAGS---IRVGYNKVDE 867 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 LR V DTG+G+ E E + F + GTGLGL ++K++++ G + Sbjct: 868 THLRFYVADTGLGI---EPEMQAQIFDRFIKLNTFV-HGTGLGLSISKSIIEQLGGTIGV 923 Query: 795 FSTPAKGTLIEIIFPL 810 S P KG+ + P+ Sbjct: 924 DSEPGKGSCFWFVLPI 939 >gi|255009663|ref|ZP_05281789.1| putative two-component system histidne kinase/reponse regulator fusion protein [Bacteroides fragilis 3_1_12] gi|313147448|ref|ZP_07809641.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313136215|gb|EFR53575.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 1014 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 128/251 (50%), Gaps = 14/251 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I++ K+ + +L+ AK AE+ + KS FLA +SHEIRTPL AI+GFS ++ + Sbjct: 630 ITKRKKMEMELTTAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTD----EE 685 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 EY N I+ + L+L +++D+LD+SKIE+G + + V L+ + E S +QL Sbjct: 686 EEKREYVNIIENNNTLLLQLISDILDLSKIEAGTLEFQYSNVELNAVMKELESTLQLKIK 745 Query: 681 EKRILIRTSFANNIPRILADLRS--VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + ++ F R L L V Q+ +N+++NAI FT G I +E+ Sbjct: 746 SEA--VKLEFVPPADRCLVHLEKNRVSQLIINLVTNAIKFTEKGS--IRFGYELRGKELY 801 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG G+ E E F ++ + Q GTGLGL + + +V+ G + S Sbjct: 802 FYVADTGCGIAKDEQESIFGRFVKLNSFAQ----GTGLGLSICQTLVNHMGGHIGVESEK 857 Query: 799 AKGTLIEIIFP 809 KG+ P Sbjct: 858 GKGSTFWFTLP 868 >gi|120612915|ref|YP_972593.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] gi|120591379|gb|ABM34819.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] Length = 951 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 79/248 (31%), Positives = 131/248 (52%), Gaps = 16/248 (6%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E + + L+ ++AE+ K+ FLA +SHEIRTPL AI+G +++ + PL Sbjct: 401 DVTEQRNQARALA---QVAEE----KATFLAVMSHEIRTPLNAILGLAQLALRE---PL- 449 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P E + R+G +L IV+D LD SKI+ G + L + +++ L + A Sbjct: 450 PPAQQERVEQLYRAGRRLLRIVDDTLDFSKIDGGHLVLEHAEFDARQLLADLCELFEPRA 509 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 +K + +R + ++P ++ D + QI +N ++NAI FT SG + + E Sbjct: 510 RDKGLALRVGLSEDLPPHLVGDAHRIAQILMNFVNNAIKFTESGEVAVALEAEAQDSEGT 569 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V+LR VRDTG+G+T + E + F Q + R GTGLGL +++ + G + Sbjct: 570 VVLRGTVRDTGIGLTAQQREHLFQSFHQADATITRRFGGTGLGLAISRRLARHMGGDAGV 629 Query: 795 FSTPAKGT 802 STP G+ Sbjct: 630 DSTPGLGS 637 >gi|189501026|ref|YP_001960496.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides BS1] gi|189496467|gb|ACE05015.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides BS1] Length = 993 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 125/243 (51%), Gaps = 8/243 (3%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A+ + KS+FLA +SHEIRTP+ +IG SE++ + ++A I+ SG + Sbjct: 330 ADAANKAKSEFLANMSHEIRTPMNGVIGMSELLLRSTL----DKEQKKFAETINASGKNL 385 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ND+LD SKIE+ K+ + +L + + E I++ A +K + +IP + Sbjct: 386 LHLLNDILDFSKIEADKLEIEEIDFNLLDLLDEIINMFSYKAGKKGLNFTFLPDEDIPLL 445 Query: 698 L-ADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTGVGMTNYEL 753 L D +KQI +N++SNAI FT G ++ + N + V DTG+G+ + Sbjct: 446 LRGDPGRIKQILVNLISNAIKFTDEGEILVNVELEEDFGDNARIRFTVSDTGIGIDESRM 505 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 + +PF Q S + GTGLGL ++ + G+ + STP++G++ Sbjct: 506 DAIFEPFVQADGSTIRKYGGTGLGLSISNKLARNMGGRIQVRSTPSQGSMFYFSIDFIKQ 565 Query: 814 SHP 816 HP Sbjct: 566 QHP 568 >gi|327188568|gb|EGE55778.1| putative two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CNPAF512] Length = 759 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 145/291 (49%), Gaps = 20/291 (6%) Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHK 585 + + + + +++ R ++ + P L D++E + A++ AE S+ K Sbjct: 184 VEISTPEGQRIFVWRDVVTRDPADGRLLLHSVARDVTEERLLAQGREQARQKAEYNSAAK 243 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY---IDRSGNLVLDIVN 642 S LA VSHE+RTPL+ I+G + ++ R E NY I +SG+ + +V Sbjct: 244 SRLLATVSHEVRTPLSGILGMTHLLAETRL-------TQEQQNYLANIRQSGHALTQLVE 296 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DL 701 DLLD S IE G+ LH SL + + + ++ A+EK I I + ++++P+ ++ D Sbjct: 297 DLLDFSTIEVGRFELHPRSESLRKLLESVVEMLAHRAHEKGIEIGATVSSDVPQNMSFDP 356 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 ++Q+ N++ NA+ FT GG I + N +++ V D+G GMT E+ + FG Sbjct: 357 ARLRQVLFNVIGNAVKFTQVGGVFIRVSLDAGN--LLITVADSGPGMTA---EEQARVFG 411 Query: 762 QIPNSQQI--RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + + GTGLGL ++ ++ G + S G+ I FP+ Sbjct: 412 EFEQGGTVADKSAGTGLGLAISARIMREFGGALTVASEKGLGSEFTIRFPV 462 >gi|113474748|ref|YP_720809.1| multi-sensor hybrid histidine kinase [Trichodesmium erythraeum IMS101] gi|110165796|gb|ABG50336.1| multi-sensor hybrid histidine kinase [Trichodesmium erythraeum IMS101] Length = 1384 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 77/257 (29%), Positives = 129/257 (50%), Gaps = 31/257 (12%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L+ A+ A + KS+FLA +SHEIRTP+ A+IG + ++ + E+ I Sbjct: 654 LAKARDEALAATRAKSEFLATMSHEIRTPINAVIGMTGLLLDTSL----KSDQTEFVETI 709 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG+ +L ++ND+LD SKIES K +L P L+ + E+I L+ +E+ + + Sbjct: 710 RSSGDALLTLINDILDFSKIESEKFDLEEHPFDLETCLEESIDLLVAKVSEQGLELVYFI 769 Query: 691 ANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------------- 735 P I + D+ V+QI +N+LSNA+ FT S G++++S + E Sbjct: 770 DPETPTIVIGDVTRVRQILVNLLSNAVKFT-SDGEVLVSVSGRKLEIEENVQNLAVENIS 828 Query: 736 -----------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 E+ V+DTG+G+ + + K F Q+ +S GTGLGL ++K + Sbjct: 829 ESDTCDIWPAYEIQFSVKDTGIGIPANRMNRLFKRFSQVDSSTNREYGGTGLGLVISKRL 888 Query: 785 VDANMGKFYIFSTPAKG 801 + G+ ++ S G Sbjct: 889 AEMMGGQMWVESMGVVG 905 >gi|261419733|ref|YP_003253415.1| histidine kinase [Geobacillus sp. Y412MC61] gi|261376190|gb|ACX78933.1| histidine kinase [Geobacillus sp. Y412MC61] Length = 470 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 120/235 (51%), Gaps = 24/235 (10%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+ ++ VSHE+RTPL I+G +E++ N+ PL R +Y I + ++ ++ND Sbjct: 243 KSELVSTVSHELRTPLAGILGLAELLLNK---PLAPERQRKYLTAIGQEAERLMALINDF 299 Query: 645 LDISKIESGKMNLHFEPVSL---------DEAVSEAISLVQLYANEKRILIRTSFANNIP 695 LD+ ++E+G+ +EPV L E + I + KR +IR Sbjct: 300 LDVQRMEAGRQTYRWEPVDLVPIMEKIIDAEKMGTDIHTFSVSVETKRTMIR-------- 351 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 D ++Q+ N++ NA+ ++P+GG ++I S + + V+D G+G+ L Sbjct: 352 ---GDRERLRQLFTNLVHNAVKYSPNGGAVVIRLYEHSGC-LCVDVQDEGLGIPAEALPH 407 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F ++ NS + R GTGLGL + K + A+ G+ + S KG+ + FPL Sbjct: 408 IFEKFFRVDNSDRRRIGGTGLGLTIVKEIAKAHGGEVTVVSEEKKGSTFTVRFPL 462 >gi|153956235|ref|YP_001397000.1| signal transduction histidine kinase component [Clostridium kluyveri DSM 555] gi|146349093|gb|EDK35629.1| Predicted signal transduction histidine kinase component [Clostridium kluyveri DSM 555] Length = 290 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 132/238 (55%), Gaps = 10/238 (4%) Query: 577 IAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY-IDRS 633 I+EKE + DF++ VSHE RTPLT I G E I + P+YI+ + + Sbjct: 55 ISEKEKLEQMRKDFISNVSHEFRTPLTVIKGNLESI----IDGITKPKYIKNTCITLLKE 110 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 N + +V DLL++SK+ESGK++++F ++++ +++ + + L N K I ++ S +N Sbjct: 111 TNRLERMVKDLLNLSKLESGKLDINFSELNVNMVINDTLRNLSLLINAKSINLQLSLEDN 170 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYE 752 +P + +D +KQ+ + L N I F+ + G + I T H +N + + + D G+G+ + Sbjct: 171 LPSLFSDYDKLKQLLIIFLDNGIKFSQNKGCLNIQTYAHGNN--IFIVIEDNGIGIPEDQ 228 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 ++ + F ++ S+ + T LGL +AK +V G F + S KGT I I FP+ Sbjct: 229 IQYLGEKFFKVDKSRASNTKSTELGLSIAKKLVKVLNGSFSVESKLKKGTKITISFPI 286 >gi|293371900|ref|ZP_06618304.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] gi|292633146|gb|EFF51723.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f] Length = 400 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 83/282 (29%), Positives = 141/282 (50%), Gaps = 41/282 (14%) Query: 548 LPFSSCYSLTM-HDISE-WK------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 P Y L M DIS+ W+ Q++ +L A+ AE+ KS FLA +SHEIRTP Sbjct: 138 FPLDKKYLLCMCRDISQQWEAEQTNAQQQKELKAARIKAEESDRLKSAFLANMSHEIRTP 197 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 L AI+GFS++I N +Y+ I+R+ ++L++ ND+LD++ +E+ + + Sbjct: 198 LNAIVGFSKLITYATSAEEKN----QYSEIIERNSEMLLNLFNDILDLASLEADSLKFNI 253 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS----------VKQIAL 709 P+ L + + L Q + ++ + N + IL D+ + + QI Sbjct: 254 RPIKL---IDICLQLEQQFWHKTQ--------NGVKLILDDVDTDMYTSGDWNRIIQIIS 302 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 N+LSNA FTP G I + E+ + V+D+G+G+ + + FG++ + Q Sbjct: 303 NLLSNATKFTPKGE---IHFGYREKEDFVEFYVKDSGIGIPAARIATIFRRFGKVDDFVQ 359 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L + +V+ G+ ++ S +G+ PL Sbjct: 360 ----GTGLGLTLCRMLVEKMGGRIWLRSQEGQGSRFYFTLPL 397 >gi|113476924|ref|YP_722985.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] gi|110167972|gb|ABG52512.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] Length = 1207 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 124/232 (53%), Gaps = 3/232 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +FLA SHE+RTPL IIG ++ I++ GP+ + + + I SG+ + ++VND+ Sbjct: 457 KDEFLANTSHELRTPLNGIIGIADSIRDGATGPISELQK-KNLSMIVGSGHRLANLVNDI 515 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD SK+ + L V + E ++ ++ K + + + ++++P + AD + Sbjct: 516 LDFSKLRHCSIKLQISSVGMREVTEIVLAFSRMILEGKDLQLINAISSDLPPVEADENRI 575 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +QI N++ NAI FT SG + + N+++ + V DTG+G+ + E K F Q Sbjct: 576 QQIMHNLVGNAIKFTDSGVVKVSAELIDVNKKMAITVSDTGIGIPEDKYEAIFKSFEQGD 635 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 S + + GTGLGLP+ K +V+ + G + ST G+ E F L + P Sbjct: 636 GSTERQYGGTGLGLPITKKLVELHGGTISVKSTVGIGS--EFTFTLNVSEKP 685 >gi|228985104|ref|ZP_04145271.1| hypothetical protein bthur0001_18050 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774591|gb|EEM22990.1| hypothetical protein bthur0001_18050 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 444 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 126/251 (50%), Gaps = 13/251 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E + + L+H + EK K++F+A +SHEIRTPLT I G+SE +K L Sbjct: 205 GELGELAHSLNHMSEKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKT--VDHLTEE 262 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + I + ++ +V +LLD S+++S NL+ + V L + + E I + A E Sbjct: 263 EIKQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEE 322 Query: 682 KRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K++ F I RI + D +KQI LNI+ NAI ++ G++ I T + + VI Sbjct: 323 KQM----QFIKTIERIELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKSEGQAVI- 377 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V+D G+G+ L + F QI N G GLGL + K MV+ + G I S Sbjct: 378 EVKDEGMGIAKEHLPYIEQSFYQINN----HATGAGLGLAIVKKMVELHGGTINIISKEG 433 Query: 800 KGTLIEIIFPL 810 GT I I PL Sbjct: 434 IGTTILIKLPL 444 >gi|26986877|ref|NP_742302.1| multi-sensor signal transduction histidine kinase [Pseudomonas putida KT2440] gi|24981479|gb|AAN65766.1|AE016202_9 sensory box histidine kinase [Pseudomonas putida KT2440] Length = 593 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 96/368 (26%), Positives = 172/368 (46%), Gaps = 41/368 (11%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-------PVEDILRKPFTVFLEQNT 505 +L ++L++ DG+ II+R+G + N + G+ + + L++P LEQ Sbjct: 257 RLQAVLDSIDDGLLIIDRQGRLEHLNPVAQRQLGWNDSRLGSSLVEALQRPE---LEQQL 313 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISE 563 V+ SLD + + + + +E +LL+ + P M HD++E Sbjct: 314 RQVLRGG-----SLD--RPPDDLNMEVDEESRLLTYSLTPVSHPQGPILGAVMVLHDVTE 366 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI-IGFSEVIKNQRFGPLGNPR 622 + + +S+F+ R SHE+RTP+T + + F + + +F P R Sbjct: 367 QRAFERV--------------RSEFVLRASHELRTPVTGMHMAFGLLRERVKFPP--EAR 410 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + I + ++NDLL+ S+ +SG L P ++D+ + A S A K Sbjct: 411 ENDLLETIGEEMQRLTQLINDLLNFSRYQSGLQKLELAPCAIDDLLDHAQSRFAEQAAHK 470 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 +I + +PRI AD+ + ++ N+L NAI T +GG+I + + E VI+ V Sbjct: 471 QIELIKELDPPLPRIQADVAQLDRVLDNLLHNAIRHTANGGRIRLHARRHA-ERVIISVE 529 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D G G++ + + +PF Q+ + G GLGL L K +V + G+ +FS P +GT Sbjct: 530 DNGEGISYGQQARIFEPFVQVGRKK----GGAGLGLALCKEIVQLHGGRMGVFSRPGQGT 585 Query: 803 LIEIIFPL 810 + P+ Sbjct: 586 QFYMALPV 593 >gi|196047270|ref|ZP_03114485.1| sensor histidine kinase [Bacillus cereus 03BB108] gi|196021895|gb|EDX60587.1| sensor histidine kinase [Bacillus cereus 03BB108] Length = 453 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 125/251 (49%), Gaps = 13/251 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E + + L+H EK K++F+A +SHEIRTPLT I G+SE +K L Sbjct: 214 GELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKT--VDHLTEE 271 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + I + ++ +V +LLD S+++S NL+ + V L + + E I + A E Sbjct: 272 EIKQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEE 331 Query: 682 KRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K++ F I RI + D +KQI LNI+ NAI ++ G++ I T + VI Sbjct: 332 KKM----QFIKTIERIELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVI- 386 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 +V+D G+G+ L + F QI N G GLGL + K MV+ + G I S Sbjct: 387 KVKDDGIGIAKEHLPYIEQSFYQINNHTT----GAGLGLAIVKKMVELHGGTINIISKEG 442 Query: 800 KGTLIEIIFPL 810 GT I I PL Sbjct: 443 IGTTILIKLPL 453 >gi|27365036|ref|NP_760564.1| chitin catabolic cascade sensor histidine kinase chiS [Vibrio vulnificus CMCP6] gi|27361182|gb|AAO10091.1| Chitin catabolic cascade sensor histidine kinase ChiS [Vibrio vulnificus CMCP6] Length = 1129 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 121/227 (53%), Gaps = 5/227 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL-GNPRYIEYANYIDRSGNLVLDIVND 643 K +FLA SHE+RTPL +IG +E + + GPL N RY + I +SG + +V+D Sbjct: 460 KDEFLATTSHELRTPLHGMIGIAETLISGANGPLPSNQRY--QLDIIIKSGQRLATLVDD 517 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 LLD K+ G +++ V+L A + L K + I +N++ + AD + Sbjct: 518 LLDYHKMRYGSLDIQKSAVNLASATRLVLELSHHLLGNKTLRIINQVSNDVAPVSADPQR 577 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 ++Q+ N++ NAI +T + G+I+IS + +++V ++V DTG G+ +LE +P Q Sbjct: 578 LEQVLYNLIGNAIKYT-TEGKIVIS-ANVVDDKVRVQVVDTGQGIPAEQLEHIFEPLIQA 635 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +G GLGL +++ +++ G Y+ S P GT PL Sbjct: 636 GRDSGRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPL 682 >gi|125972809|ref|YP_001036719.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum ATCC 27405] gi|125713034|gb|ABN51526.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum ATCC 27405] Length = 1160 Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 124/232 (53%), Gaps = 3/232 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 EK + ++S+FLA +SHE+RTPL +II S+++ ++ + + +E I+++G +L Sbjct: 532 EKVNKYRSEFLANMSHELRTPLNSIILLSKMLARKKINEF-DEKDMEKIEVINKAGQELL 590 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++ND+LD+SK+ESGKMNL+ E + + + + A EK I + N ++ Sbjct: 591 RLINDVLDLSKVESGKMNLNIFTFHSSELMEDLRQMFESSAKEKNISFFVEDSIN-SMLV 649 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAM 757 D + QI N LSNA FT G I+ + E ++I V DTG+G+ + Sbjct: 650 GDRDKISQILRNFLSNAFKFTSEGSVILKAEMDKDRENDLIFSVTDTGIGIPEEHISDIF 709 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q+ + + GTGLGL ++K + D G+ + S +G+ + P Sbjct: 710 QEFRQVDGTISRKYGGTGLGLSISKKLADLMKGEIEVRSKIGEGSTFFLKLP 761 >gi|152982169|ref|YP_001352554.1| sensory box histidine kinase/response regulator [Janthinobacterium sp. Marseille] gi|151282246|gb|ABR90656.1| sensory box histidine kinase/response regulator [Janthinobacterium sp. Marseille] Length = 702 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 79/244 (32%), Positives = 124/244 (50%), Gaps = 24/244 (9%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI------KNQRFGPLGNPRYI 624 LS AK AE + KS+FLA +SHEIRTP+ ++G ++ + QR ++ Sbjct: 318 LSIAKDEAESANRAKSEFLAVMSHEIRTPMNGMLGMMQLALAETSDRTQR-------EHL 370 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD--EAVSEAISLVQLYANEK 682 E A Y S +L I+ND+LD SK+ESG NL FE D + + I+L+ + + Sbjct: 371 ETAQY---SAEALLSILNDILDFSKLESG--NLQFEAAQFDLLKTMDSVINLMASRSCDA 425 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVI 738 + + IPR+L D ++Q+ LN+++NA+ FT GG ++ + + + Sbjct: 426 SLALAVECPAEIPRMLVGDANRLRQVLLNLINNALKFTEQGGVTLKVALLNLNAGQARMR 485 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V D+G+G+ + + F Q NS R GTGLGL + K +VD G + S Sbjct: 486 FSVIDSGIGIAPEAQARLFQAFSQADNSISRRFGGTGLGLSICKKIVDMQGGSIGVHSAE 545 Query: 799 AKGT 802 KG+ Sbjct: 546 GKGS 549 >gi|251800109|ref|YP_003014840.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] gi|247547735|gb|ACT04754.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] Length = 891 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 78/258 (30%), Positives = 132/258 (51%), Gaps = 8/258 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ K +L + S +KS+FLA +SHE+RTPL +++ S ++ G L N Sbjct: 472 ELEKTKTQLEEKARQLSLSSQYKSEFLANMSHELRTPLNSLLILSNILATNTEGNL-NDH 530 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 ++YA I +SGN +L ++ND+LD++K+E+GK++L V L E A A +K Sbjct: 531 QVKYAYTIHQSGNDLLQLINDILDLAKVEAGKIDLVHGKVCLHEISEFAEQQFLPVARQK 590 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----- 736 + +T ++P+ L D + + QI N+LSNA FT G++ H + Sbjct: 591 GLSFKTVVDADLPQTLYTDEQRLMQIIKNLLSNAFKFTER-GEVKFHIHHAQSGSRAKGG 649 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + DTG+G+ + E + F Q + + GTGLGL ++ M G ++ S Sbjct: 650 IAFSIIDTGIGIPKEKQELIFQAFQQADGTTNRKYGGTGLGLSISINMAQLLGGAIHVTS 709 Query: 797 TPAKGTLIEIIFPLYDTS 814 P KG++ + P + S Sbjct: 710 VPGKGSVFTLTLPSEEAS 727 >gi|283796048|ref|ZP_06345201.1| PAS domain protein [Clostridium sp. M62/1] gi|291076258|gb|EFE13622.1| PAS domain protein [Clostridium sp. M62/1] Length = 889 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 82/251 (32%), Positives = 125/251 (49%), Gaps = 14/251 (5%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + +L A + AEK + KS+FL+R+SHEIRTP+ IIG +I Q G + R + Sbjct: 343 QKELEAAIQQAEKANRAKSEFLSRMSHEIRTPMNGIIGMG-MIAMQNLGD--SSRVEDCI 399 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRI 684 I+ S +L ++ND+LD+SKIESG++ + F+ E+VS IS A +K + Sbjct: 400 RKINLSSRHLLTLINDVLDMSKIESGRIEIKRDVFDFRLFLESVSNVIS---GQARDKGL 456 Query: 685 LIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---- 739 F ++ + D V QI +N+LSNA+ FTP GG I++ + + Sbjct: 457 NFDVIFLGDMEEELFGDALRVNQILMNLLSNALKFTPEGGSIVLRIAKMDEDSTTVWLKF 516 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG G+ EK PF Q GTGLGL +++ + G+ + S Sbjct: 517 EVSDTGCGIEEKNYEKIFMPFEQEHEDISHVYGGTGLGLSISRRFAELMDGRLTVSSQVG 576 Query: 800 KGTLIEIIFPL 810 KG+ + P Sbjct: 577 KGSTFTLTMPF 587 >gi|295690986|ref|YP_003594679.1| histidine kinase [Caulobacter segnis ATCC 21756] gi|295432889|gb|ADG12061.1| histidine kinase [Caulobacter segnis ATCC 21756] Length = 842 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 77/256 (30%), Positives = 132/256 (51%), Gaps = 9/256 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ +L A++ AE + KS FLA +SHE+RTPL ++G ++ ++ + P+ Sbjct: 444 RRGSQRLKGAQERAEAANQAKSAFLAVMSHELRTPLNGMLGLAQALRTEDL----TPQQR 499 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E + I SG+ +L ++ND+LD+SKIE+GK+ + L + + + Q A EK + Sbjct: 500 EQIDLILDSGDTLLVLLNDILDLSKIEAGKLEIAPTTGDLVGSCARLVGGYQPTAREKGV 559 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILR 740 ++ + P ++ D V+Q N++SNA+ FT G + + ++ V LR Sbjct: 560 VLSFRLESEAPGPLMFDGVRVRQCLTNLVSNALKFTTEGKVEVGLACYPEDDGRVRVRLR 619 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+GM+ + K PF Q S GTGLGL + + +V G+ + S + Sbjct: 620 VSDTGIGMSQETIAKLFSPFTQADASTTRNFGGTGLGLNITRRLVKMMHGEIKVESEEGR 679 Query: 801 GTLIEIIFPLYDTSHP 816 G++ I L D + P Sbjct: 680 GSVFTIEM-LVDPAEP 694 >gi|253570643|ref|ZP_04848051.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251839592|gb|EES67675.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 720 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 81/255 (31%), Positives = 128/255 (50%), Gaps = 11/255 (4%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T +++ K+ + L AK AE+ ++ KS FLA +SHEIRTPL AI+GFS ++ + G Sbjct: 467 TSMTVTQRKEMEEALVQAKVKAEEANTLKSSFLANISHEIRTPLNAIVGFSSLLVSAERG 526 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + EY N I+ + L+L +++D+LD+SKIE+G M + PV + E + Sbjct: 527 ISEEKQ--EYINIIENNNTLLLQLISDVLDLSKIEAGTMEFDYAPVDVHGLFIELEDTFR 584 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 L + I I + AD + Q+ +N+++NA+ FT G I E+ Sbjct: 585 LRNKKSGICICYHRRTTECGVKADRNRLVQVMMNLMNNAVKFTGEGS---IEFGFDVRED 641 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 L V DTG G+ LE+ F ++ + Q GTGLGL + +A+V+ GK Sbjct: 642 GFLHFYVTDTGCGIPEERLEEIFGNFVKLNSFVQ----GTGLGLTICRAIVERMGGKIGA 697 Query: 795 FSTPAKGTLIEIIFP 809 S +G+ P Sbjct: 698 VSRLGQGSTFWFTLP 712 >gi|225570976|ref|ZP_03779999.1| hypothetical protein CLOHYLEM_07080 [Clostridium hylemonae DSM 15053] gi|225160438|gb|EEG73057.1| hypothetical protein CLOHYLEM_07080 [Clostridium hylemonae DSM 15053] Length = 959 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 90/296 (30%), Positives = 146/296 (49%), Gaps = 22/296 (7%) Query: 530 LGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDI------SEWKQEKNKLSHAKKIAEKES 582 LG + LS+ II P+ S+ + + ++ +QE+ L A + A+ S Sbjct: 389 LGDDGDYHWLSVHIIAVDNPYGQDTLSVMLFRVLDEQHAAQARQEQ-LLRDALEEAKAAS 447 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL---GNPRYIEYANYIDRSGNLVLD 639 + KSDFL+R+SH+IRTP+ AI+G S + G L + + ID S +L Sbjct: 448 NAKSDFLSRMSHDIRTPINAIVGMSTI------GQLKIDDRNQSVNCFKKIDDSSRYLLS 501 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-IL 698 ++ND+LD+SKIE+GKM L E L E ++ ++V + K I +++ + L Sbjct: 502 LINDILDMSKIENGKMALTDEQFDLHELINSITAIVYSQSVFKNIQFEVYCEDSLQQYYL 561 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIII----STTHTSNEEVILRVRDTGVGMTNYELE 754 D + QI +N+LSN++ FTP+GG I + S + +V D+G GM+ ++ Sbjct: 562 GDALRMNQILMNLLSNSLKFTPAGGMITLHVKESKRRCGYSYLAFQVTDSGKGMSEDFMK 621 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + +PF Q GTGLGL + +V G + S +GT+ I P Sbjct: 622 RLYQPFEQEAADTARNLTGTGLGLSIVYNLVQLMNGTINVESRLGEGTVFSIEIPF 677 >gi|218281490|ref|ZP_03487933.1| hypothetical protein EUBIFOR_00498 [Eubacterium biforme DSM 3989] gi|218217412|gb|EEC90950.1| hypothetical protein EUBIFOR_00498 [Eubacterium biforme DSM 3989] Length = 717 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 133/237 (56%), Gaps = 7/237 (2%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP-RYIEYANYID 631 AKK A++ S+ KS FL +SH+IRTP+ AI+G++E+++ +GN + +Y + I Sbjct: 289 QAKK-AQEASAAKSRFLFSMSHDIRTPMNAIMGYTELMEKN----IGNAEKEKDYLSKIH 343 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 S +LD++N +L++++IESGK L+ + ++ + + S+ + A+EK + + + Sbjct: 344 SSSKFLLDLINSILEMARIESGKETLNIKACNIFDVLDSLNSVFEKLAHEKGLEYQCTTK 403 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 P I D +++I LNI+ N+I +T G ++I + + ++DTG+GM+ Sbjct: 404 IQHPYIYCDPIKLEEILLNIIGNSIKYTDE-GMVLIQIEEGESGQFQCMIQDTGIGMSEA 462 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 L A + F + + Q +GTGLGL + K++V+ G I S +GT + F Sbjct: 463 YLPHAFEDFSREKSGTQTSVKGTGLGLAIVKSLVELMNGTIEISSQVNQGTTTRMKF 519 >gi|91228317|ref|ZP_01262246.1| sensory box sensor histidine kinase/response regulator [Vibrio alginolyticus 12G01] gi|91188133|gb|EAS74436.1| sensory box sensor histidine kinase/response regulator [Vibrio alginolyticus 12G01] Length = 1128 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 88/317 (27%), Positives = 152/317 (47%), Gaps = 18/317 (5%) Query: 508 VMNHYLTEILS---LDLRQTLEKITLGSTKEEKLLSLR---IIIKKLPFSSCYSLTMHDI 561 + +HYL+ ++ L L EK++ G + ++R I L F I Sbjct: 370 IASHYLSNFITSPLLKLTWVAEKVSAGDLDDTSFNTVRKDEIGRLALSFERMQRSIREKI 429 Query: 562 SEWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 K++ +L +I +K++ K +FLA SHE+RTPL ++G +E + + Sbjct: 430 QTIKKQNEELESNIQIIQKQNEELQLADKLKDEFLATTSHELRTPLHGMVGIAETLASGA 489 Query: 615 FGPLGNPRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + P +Y + I +SG + ++V+DLLD K+ G M++ VSL A + Sbjct: 490 NGAI--PASQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLGSATRLVLE 547 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 L K I I ++ + AD + ++Q+ N++ NAI +T S G+I+IS + Sbjct: 548 LSSHLLGSKTIRIINQVPADLKAVSADPQRLEQVLYNLIGNAIKYT-SEGKIVIS-ANVV 605 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ V ++V DTG G+ +LE +P Q +G GLGL +++ +++ G Y Sbjct: 606 DDHVRVQVVDTGQGIPAEQLEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLY 665 Query: 794 IFSTPAKGTLIEIIFPL 810 + S P GT PL Sbjct: 666 VSSQPMVGTTFSFTLPL 682 >gi|115359898|ref|YP_777036.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD] gi|115285186|gb|ABI90702.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD] Length = 1002 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 128/258 (49%), Gaps = 8/258 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI+ KQ ++KL A++ A+ + KS FLA +SHEIRTPL AI+G E+++ Sbjct: 493 TLTDITARKQMEDKLREAREAADDANKAKSTFLATMSHEIRTPLNAIVGNLELMERAPL- 551 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P R ++ + S + +L ++ND+LD+SK+ES +M L P L V + ++ Sbjct: 552 PAEERRRLQ---TVMSSSDALLRVINDVLDLSKVESNQMVLEAVPFDLRAVVRDVAAIFH 608 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHT 732 A + + + + + D ++QI N++SNAI FT G I + T Sbjct: 609 PLAAARHLALECRIDPQLADGYVGDPTRLRQIVSNLVSNAIKFTERGSVTIEARPTGTVG 668 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 V + VRDTG+G+ L + Q S R GTGLGLPL + + G Sbjct: 669 QARGVEVVVRDTGIGIAPESLPTLFDVYVQTDASIYRRFGGTGLGLPLCRRLARLMHGDL 728 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S P +G + PL Sbjct: 729 AVESRPGQGATFIVSLPL 746 >gi|283781850|ref|YP_003372605.1| histidine kinase [Pirellula staleyi DSM 6068] gi|283440303|gb|ADB18745.1| histidine kinase [Pirellula staleyi DSM 6068] Length = 760 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 86/264 (32%), Positives = 131/264 (49%), Gaps = 15/264 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 S+ + +++L AK++AE + K LA VSHE+R PL AI+G+S+++ R P Sbjct: 234 SDLVKSQHELQQAKEVAENANREKDLLLANVSHELRNPLHAILGYSDLVL--RDLPSSVA 291 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 R E+ I + L +VNDLLDIS++ S + L EPV + +S+ A + Sbjct: 292 R--EHLAIIRDAAETQLRLVNDLLDISQLTSSTLRLQLEPVDPHSIIRRCLSITAPLATQ 349 Query: 682 KRILIR--------TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 K I +R S A N P + AD + Q+ N+++NAI F+ G I + T Sbjct: 350 KNIQLRLIPHTQKGQSLAENAPTYVEADPLRLLQVLWNLVTNAIKFSEHGEVTIHTCTDW 409 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + + VRD G G+ E K PF QI S + + G GLGL + K +V+ G Sbjct: 410 EHSRFTITVRDRGPGIGLAEQTKIFDPFYQIDTSLERKHGGIGLGLAICKFLVEGMGGSI 469 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHP 816 + S ++G+ E L TS P Sbjct: 470 RLESELSQGS--EFTIELRTTSPP 491 >gi|253699011|ref|YP_003020200.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251773861|gb|ACT16442.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 647 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 118/230 (51%), Gaps = 10/230 (4%) Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 ++FLA +SHEIRTP+ +IIG ++++ + EY + I S +L I+ND+L Sbjct: 179 TEFLANMSHEIRTPMNSIIGMTQLLAYTEL----SAEQKEYVDGILTSSEGLLAIINDIL 234 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSV 704 D+SK+E+GK+ L SL + ++E I A+EK + ++ IP ++ D + Sbjct: 235 DLSKVEAGKIELESRNFSLRQNINEIIRTQTAAAHEKGLQLKVFIPEEIPDALVGDRLRL 294 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR----VRDTGVGMTNYELEKAMKPF 760 KQ+ LN + NAI FT S G I ++ +E R + DTG+G+ L++ PF Sbjct: 295 KQVLLNTIGNAIKFTAS-GSIAVTVALAEKQEDAARLTFSIADTGIGIAPESLDRIFAPF 353 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 Q S R GTGLGL ++ +V G+ + S G+ P Sbjct: 354 AQEDTSTTRRYGGTGLGLSISTKLVRLMGGRIWAESRKNTGSTFHFEIPF 403 >gi|190890063|ref|YP_001976605.1| two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] gi|190695342|gb|ACE89427.1| putative two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] Length = 759 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 145/291 (49%), Gaps = 20/291 (6%) Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHK 585 + + + + +++ R ++ + P L D++E + A++ AE S+ K Sbjct: 184 VEISTPEGQRIFVWRDVVTRDPADGRLLLHSVARDVTEERLLAQGREQARQKAEYNSAAK 243 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY---IDRSGNLVLDIVN 642 S LA VSHE+RTPL+ I+G + ++ R E NY I +SG+ + +V Sbjct: 244 SRLLATVSHEVRTPLSGILGMTHLLAETRL-------TQEQQNYLANIRQSGHALTQLVE 296 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DL 701 DLLD S IE G+ LH SL + + + ++ A+EK I I + ++++P+ ++ D Sbjct: 297 DLLDFSTIEVGRFELHPRSESLRKLLESVVEMLAHRAHEKGIEIGATVSSDVPQNMSFDP 356 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 ++Q+ N++ NA+ FT GG I + N +++ V D+G GMT E+ + FG Sbjct: 357 ARLRQVLFNVIGNAVKFTQVGGVFIRVSLDAGN--LLITVADSGPGMTA---EEQARVFG 411 Query: 762 QIPNSQQI--RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + + GTGLGL ++ ++ G + S G+ I FP+ Sbjct: 412 EFEQGGTVADKSAGTGLGLAISARIMREFGGALTVASEKGLGSEFTIRFPV 462 >gi|37680917|ref|NP_935526.1| sensory box sensor histidine kinase/response regulator [Vibrio vulnificus YJ016] gi|320155417|ref|YP_004187796.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio vulnificus MO6-24/O] gi|37199667|dbj|BAC95497.1| sensory box sensor histidine kinase/response regulator [Vibrio vulnificus YJ016] gi|319930729|gb|ADV85593.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio vulnificus MO6-24/O] Length = 1129 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 121/227 (53%), Gaps = 5/227 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL-GNPRYIEYANYIDRSGNLVLDIVND 643 K +FLA SHE+RTPL +IG +E + + GPL N RY + I +SG + +V+D Sbjct: 460 KDEFLATTSHELRTPLHGMIGIAETLISGANGPLPSNQRY--QLDIIIKSGQRLATLVDD 517 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 LLD K+ G +++ V+L A + L K + I +N++ + AD + Sbjct: 518 LLDYHKMRYGSLDIQKSAVNLASATRLVLELSHHLLGNKTLRIINQVSNDVAPVSADPQR 577 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 ++Q+ N++ NAI +T + G+I+IS + +++V ++V DTG G+ +LE +P Q Sbjct: 578 LEQVLYNLIGNAIKYT-TEGKIVIS-ANVVDDKVRVQVVDTGQGIPAEQLEHIFEPLIQA 635 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +G GLGL +++ +++ G Y+ S P GT PL Sbjct: 636 GRDSGRYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPL 682 >gi|315918906|ref|ZP_07915146.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313692781|gb|EFS29616.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 873 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 125/250 (50%), Gaps = 11/250 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E + K +L +K+ AE S KS FLA +SHEIRTPL AI+GFS +I Sbjct: 486 DVTELEMMKRELLSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESDDAEER 545 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 Y N ++ + +L ++N++LD+SKIESG + F P SL E ++ Sbjct: 546 KT----YYNIVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCREVYD-AHIFR 600 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + + + ++ I D V Q+ N++ NA+ FT G I + +++ Sbjct: 601 TPQGVSLVYEPSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS--ISYGYKLVDNQIVF 658 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG G+ ++ + + F ++ N Q GTGLGL + K++V+ GK + S + Sbjct: 659 HVTDTGTGIEPEKVGRVFERFAKLNNHAQ----GTGLGLSICKSIVERLGGKISVSSEFS 714 Query: 800 KGTLIEIIFP 809 KGT P Sbjct: 715 KGTTFTFTLP 724 >gi|182412655|ref|YP_001817721.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839869|gb|ACB74121.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 682 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 80/253 (31%), Positives = 132/253 (52%), Gaps = 13/253 (5%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKES---SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 M D++ Q ++ + A+++A + + KS FLA +SHEIRTPL +IG + V++ Sbjct: 137 AMEDLN--TQFEHAIDRAQQLAMEAAVANQAKSAFLAMMSHEIRTPLNGVIGMTGVLEAT 194 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + E I SG +L +VND LD SKIE+G++ L L EA Sbjct: 195 EL----DDEQRECLRTIKMSGEALLAVVNDTLDYSKIEAGRLELEQVDFDLRGCAEEAAE 250 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTH 731 L+ A K++ + A + PR I+ D ++QI +N+L NA+ FTP+G ++ I Sbjct: 251 LLAGKAFAKKLELVCDVAEDAPRRIIGDPVRLRQIFVNLLGNAVKFTPAGEIVLQIRVLE 310 Query: 732 TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 E L+ VRDTG+G+ + + + F Q+ +S + GTGLGL ++K + + Sbjct: 311 FDGEAYALQLGVRDTGIGIAADKQHRLFQSFSQVDSSTTRQYGGTGLGLAISKRLAELMG 370 Query: 790 GKFYIFSTPAKGT 802 G ++ S +G+ Sbjct: 371 GTMWVESEVGRGS 383 >gi|126656209|ref|ZP_01727593.1| Multi-sensor Signal Transduction Histidine Kinase [Cyanothece sp. CCY0110] gi|126622489|gb|EAZ93195.1| Multi-sensor Signal Transduction Histidine Kinase [Cyanothece sp. CCY0110] Length = 1565 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 97/371 (26%), Positives = 181/371 (48%), Gaps = 38/371 (10%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S E G+ +I+ EG L N+A + GY +++L K F + ++ N Sbjct: 1205 SAFENAGIGMVLISLEGEFLKVNQAFCGMLGYSEQELLLKNFQEITHPDDLTMSN----- 1259 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL---S 572 + L++++ G K ++ R I+ C S+T+ I + Q+++ L + Sbjct: 1260 -------KGLQQLSSGQIKTYQM-EKRYIVASGSIIWC-SVTISSIKD--QDQHPLYFVT 1308 Query: 573 HAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN-PRYIEYA-N 628 + I E+ K++F++ VSHE+RTPLT++ G ++ + G L P +E+ Sbjct: 1309 QVQDITERRELDRLKTEFISVVSHELRTPLTSMRGALGLLDS---GVLREEPETVEHMLQ 1365 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR- 687 + R+ + ++ +VND+L++ ++ESGK+ L E +D +++A+ V A E I I Sbjct: 1366 IVLRNCDRLIRLVNDILNLERLESGKVQLIKEACEVDHLLTDAVETVSAMAMEASINIEL 1425 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS--------TTHTSNEEVIL 739 TS + + A ++ QI N+LSNAI F P G + ++ +T + V+ Sbjct: 1426 TSIS---AHVWASYDAIIQILTNLLSNAIKFAPEGTTVWLTAQLFDDPDSTDRATSFVLF 1482 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V+D G G+ +L F Q+ S + GTGLGL + ++++ + G+ ++ S Sbjct: 1483 SVKDQGRGIPTNKLTTIFGRFQQVDASDARQKAGTGLGLAICQSIIQQHNGRIWVDSILG 1542 Query: 800 KGTLIEIIFPL 810 +G+ PL Sbjct: 1543 EGSTFYFTLPL 1553 >gi|299145369|ref|ZP_07038437.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 3_1_23] gi|298515860|gb|EFI39741.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 3_1_23] Length = 808 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 125/250 (50%), Gaps = 11/250 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E + K +L +K+ AE S KS FLA +SHEIRTPL AI+GFS +I Sbjct: 421 DVTELEMMKRELLSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESDDAEER 480 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 Y N ++ + +L ++N++LD+SKIESG + F P SL E + ++ Sbjct: 481 KT----YYNIVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCRE-VHDAHIFR 535 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + + + ++ I D V Q+ N++ NA+ FT G I + +++ Sbjct: 536 TPQGVNLVYESSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS--ISYGYKLVDNQIVF 593 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG G+ ++ + + F ++ N Q GTGLGL + K++V+ GK + S Sbjct: 594 HVTDTGTGIEPEKVGRVFERFAKLNNHAQ----GTGLGLSICKSIVERLGGKISVSSEFG 649 Query: 800 KGTLIEIIFP 809 KGT P Sbjct: 650 KGTTFTFTLP 659 >gi|262173944|ref|ZP_06041621.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio mimicus MB-451] gi|261891302|gb|EEY37289.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio mimicus MB-451] Length = 857 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 138/256 (53%), Gaps = 9/256 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++ + + + A++ AE+ + +++FLA++SHE+RTPL ++G S+++K PL Sbjct: 454 QDVTSIAEAEKQSQVARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT---PL 510 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + E+ + SG +L ++ND+LD S++E GK + L E V + + Sbjct: 511 TDEQR-EHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKSEFRLKELVCAIDRIYRPL 569 Query: 679 ANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-- 735 N+K I L+ S ++ + +D + QI N+L+NAI FT G I ++ + Sbjct: 570 CNDKGIELVVESNITSVTLVRSDQIRINQILFNLLNNAIKFTHQGS-IRVALELIEGDPL 628 Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +++++V DTG+G+ +L +PF Q ++ G+GLGL + ++V+ G+ ++ Sbjct: 629 AQLVIQVMDTGIGIREEDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHV 688 Query: 795 FSTPAKGTLIEIIFPL 810 S GT EI P+ Sbjct: 689 SSEYGHGTRFEIQLPI 704 >gi|253573897|ref|ZP_04851239.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251846374|gb|EES74380.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 611 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 92/361 (25%), Positives = 174/361 (48%), Gaps = 28/361 (7%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L SIL SDG+ + G ++ NR S++ G D+ + + S+MN Sbjct: 266 KLASILTNMSDGVIATDETGRVILMNRRASEMLGTSDTDLD--------QADIMSLMN-- 315 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 L + LE+ T+ ST E + + ++ F+ + + I + Sbjct: 316 ----LPDEEWDVLEQGTMHSTILENTGPDGDVFLIRVTFTPIHRREIGII-------GTI 364 Query: 572 SHAKKIAEKE--SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGNPRYIEYAN 628 + + + E+E + + +F+A VSHE+RTPLT I ++E +++ P PR++ + Sbjct: 365 AVLQDVTEQEKLEASRREFVANVSHELRTPLTTIKSYTEALEDGAMEDPELGPRFV---S 421 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I ++ +V DLL +S+ +S + L +P ++ E + + + EK I Sbjct: 422 VIQSQTERMIRLVTDLLHLSRFDSHEAELRKQPTNVMEMLEDVVDRFSFQMQEKEIKPTL 481 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 AN++ D + Q+ N++SNA+ +TP GG I + T + ++ + V+DTG+G+ Sbjct: 482 FIANDVDTAWIDRDQIDQVLDNLISNAMKYTPEGGAIALEARLTEDRQLAISVQDTGIGI 541 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L++ + F ++ ++ GTGLGL +A+ +V A+ G + S KGT + Sbjct: 542 PKKDLDRIFERFYRVDKARSRNMGGTGLGLSIAREIVRAHGGTISLQSELGKGTKVTFTL 601 Query: 809 P 809 P Sbjct: 602 P 602 >gi|238760198|ref|ZP_04621344.1| Sensor kinase protein rcsC [Yersinia aldovae ATCC 35236] gi|238701577|gb|EEP94148.1| Sensor kinase protein rcsC [Yersinia aldovae ATCC 35236] Length = 955 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 130/253 (51%), Gaps = 7/253 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 447 DVSSRVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PHG 505 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 506 VDRLVTAMN---NSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLV 562 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +KR+ + +PR++ D ++Q+ N+L+NAI FT +G II + Sbjct: 563 VKKRLGLYCFIEPAVPRLMYGDPVRLQQVISNLLNNAIKFTDTG--CIILQLRVRGHYLE 620 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 RVRDTGVG+ + E+ + PF Q+ Q +GTGLGL + + +++ G + S Sbjct: 621 FRVRDTGVGINSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLINLMDGDVEVISEL 680 Query: 799 AKGTLIEIIFPLY 811 G++ I PL+ Sbjct: 681 GMGSIFAIRIPLF 693 >gi|124003503|ref|ZP_01688352.1| two-component system sensor histidine kinase/response regulator, hybrid, putative [Microscilla marina ATCC 23134] gi|123991072|gb|EAY30524.1| two-component system sensor histidine kinase/response regulator, hybrid, putative [Microscilla marina ATCC 23134] Length = 1356 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 77/252 (30%), Positives = 128/252 (50%), Gaps = 5/252 (1%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E Q+K +++ + + + +S+F + +SHE+RTPLT I+ +E + G Sbjct: 816 ELAQQKEEIASQAEKLKVLNQVQSNFFSGISHELRTPLTLIVEPAEKLLQYNQEEPGK-- 873 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y I + +L ++N L+D SK+ESGKM L SL + + E I+ +L A +K Sbjct: 874 --RYTQTILGNAQRLLRLINQLMDFSKLESGKMTLQLSNNSLYQLLVEVIASFELLAQQK 931 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 I ++ + +N D V+++ N++SNA+ FTP+ G I + S +EV + V Sbjct: 932 NIELKLTASNQALHYKFDHDKVEKVVFNLISNALKFTPTQGNIEVHLWQ-SPDEVKITVT 990 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ +L F Q+ S GTG+GL L K +V+ + G + S KG+ Sbjct: 991 DTGIGIAPADLPFVFDRFYQVDGSTTKNYPGTGIGLALVKELVELHEGSIEVTSQENKGS 1050 Query: 803 LIEIIFPLYDTS 814 + FP S Sbjct: 1051 TFVVKFPFTSVS 1062 >gi|70728487|ref|YP_258236.1| sensory box histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] gi|68342786|gb|AAY90392.1| sensory box histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] Length = 1200 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 76/255 (29%), Positives = 138/255 (54%), Gaps = 14/255 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ---RFG 616 DI+E K+ +N+L A++ A++ ++ K+ FL+ +SHEIRTP+TAI+G E+ K Q R Sbjct: 692 DITERKRLENQLVEARQAADQANAAKTAFLSTMSHEIRTPMTAILGLLELEKEQARLRGV 751 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P + Y +S ++ ++ D LD++KIE+G M+L + +L L + Sbjct: 752 PFSEALRVAY-----QSAQELIGLMGDSLDLAKIEAGYMHLVPQVTALKPFFESIRQLFE 806 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A + + ++ F+ R L D ++Q+ N+LSNA+ FT + G++ ++ +E Sbjct: 807 VTARNQGVQLQLVFSERAKGRYLFDPARLRQVVHNLLSNALKFT-AQGEVRMTVECQPDE 865 Query: 736 EVI----LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + V DTG G+++ + K PF Q GTGLGL + + +V+ G+ Sbjct: 866 SGLECLRISVADTGRGISSEQQAKLFTPFVQADAMTSSAYGGTGLGLSICRQLVELMGGR 925 Query: 792 FYIFSTPAKGTLIEI 806 ++ S P GT++ + Sbjct: 926 IHLLSEPGVGTVVSL 940 >gi|298207043|ref|YP_003715222.1| sensory box sensor histidine kinase/response regulator [Croceibacter atlanticus HTCC2559] gi|83849677|gb|EAP87545.1| sensory box sensor histidine kinase/response regulator [Croceibacter atlanticus HTCC2559] Length = 509 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 84/270 (31%), Positives = 136/270 (50%), Gaps = 21/270 (7%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIA-------EKESSHKSDFLARVSHEIRTPLTAIIGF 606 Y+ +++ QE+N+ AK++ E+++ K+ FLA +SHEIRTPLTAI+GF Sbjct: 96 YTEPYKELNTIAQERNESIIAKQMLVLKNQQLEQQNRFKNKFLANISHEIRTPLTAIVGF 155 Query: 607 SEVIK--NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 SE++K N F LG + I + + +ND+LDI+KIE G++ + E ++L Sbjct: 156 SELLKKTNLNFEQLG------LLDVITNASEQLTATINDMLDIAKIELGELKISNEEINL 209 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG 723 E + + + + A K I + I + D ++Q+ N+L NAI FT G Sbjct: 210 KEVILDIAKVYKEKAKSKGINFSVEYDEEILSNTIGDKLRIQQVLGNLLENAIKFTNVGN 269 Query: 724 QIII---STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 ++ S + V V DTG G+ L + F Q+ S+ + +GTGLGL + Sbjct: 270 VSLVVKKSFQRANKIGVDFYVEDTGQGIPEDHLRSVFESFHQVNASE--KQKGTGLGLAI 327 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 K +V+A GK + S KG+ + P Sbjct: 328 TKTLVEALEGKIQVESELGKGSQFRVYLPF 357 >gi|172056400|ref|YP_001812860.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171988921|gb|ACB59843.1| integral membrane sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 845 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 118/228 (51%), Gaps = 7/228 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA-NYIDRSGNLVLDIVND 643 K++ ++ VSHE+RTPL++I GF+E++ N+ + +Y+ N +R NLV D Sbjct: 619 KTELVSTVSHELRTPLSSIYGFTELMLNREIDAIKQQKYLSTIHNETERLSNLV----TD 674 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 LD+ +++SG + L V + I + + I + + P I+ D Sbjct: 675 FLDVQRMQSGGQRYQMAHLDLYSIVDQVIGVYKASNGLHDIQLHL-LSVERPAIIGDETR 733 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 +KQ+ N+++NAI ++P GGQ+ I T T E +++ D G+G+ Y F ++ Sbjct: 734 IKQLLNNLVNNAIKYSPDGGQVDI-TVSTDQENATIQITDHGIGIPQYAFAHLFDKFYRV 792 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 NS R GTGLGL + K +V + G ++ ST KG+ + PL+ Sbjct: 793 DNSDTRRIGGTGLGLSICKEIVKEHDGVIHVESTVGKGSTFTVALPLH 840 >gi|237718855|ref|ZP_04549336.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229451987|gb|EEO57778.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 407 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 83/282 (29%), Positives = 141/282 (50%), Gaps = 41/282 (14%) Query: 548 LPFSSCYSLTM-HDISE-WK------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 P Y L M DIS+ W+ Q++ +L A+ AE+ KS FLA +SHEIRTP Sbjct: 145 FPLDKKYLLCMCRDISQQWEAEQTNAQQQKELKAARIKAEESDRLKSAFLANMSHEIRTP 204 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 L AI+GFS++I N +Y+ I+R+ ++L++ ND+LD++ +E+ + + Sbjct: 205 LNAIVGFSKLITYATSAEEKN----QYSEIIERNSEMLLNLFNDILDLASLEADSLKFNI 260 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS----------VKQIAL 709 P+ L + + L Q + ++ + N + IL D+ + + QI Sbjct: 261 RPIKL---IDICLQLEQQFWHKTQ--------NGVKLILDDVDTDMYTSGDWNRIIQIIS 309 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 N+LSNA FTP G I + E+ + V+D+G+G+ + + FG++ + Q Sbjct: 310 NLLSNATKFTPKGE---IHFGYREKEDFVEFYVKDSGIGIPAARIATIFRRFGKVDDFVQ 366 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L + +V+ G+ ++ S +G+ PL Sbjct: 367 ----GTGLGLTLCRMLVEKMGGRIWLRSQEGQGSRFYFTLPL 404 >gi|262273705|ref|ZP_06051518.1| BarA sensory histidine kinase [Grimontia hollisae CIP 101886] gi|262222120|gb|EEY73432.1| BarA sensory histidine kinase [Grimontia hollisae CIP 101886] Length = 914 Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 79/252 (31%), Positives = 135/252 (53%), Gaps = 10/252 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYAN 628 +L AKK A++ + KS+FLA +SHE+RTPL +IGF+ +++K Q L + + +Y Sbjct: 272 ELDIAKKNAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQ----LSSSQQ-DYLQ 326 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++S N +L I+ND+LD SK+E+GK+ L P ++++ E + L+ A+EK + + Sbjct: 327 TIEKSANNLLTIINDILDFSKLEAGKLLLENIPFDFEDSLDEVMRLLAPMAHEKGLELNL 386 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDT 744 IP ++ D ++Q+ N++ NA FT G + + +E + L+ +RDT Sbjct: 387 RIDPRIPAGVIGDPLRIQQVLTNLIGNATKFTERGHINVSVELKQQRDERLELQFVIRDT 446 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + + + F Q S R GTGLGL + + +V G S +G+ Sbjct: 447 GIGISERQQSQLFQAFRQADTSISRRYGGTGLGLVITQKLVQQMGGDIGFSSRLHQGSTF 506 Query: 805 EIIFPLYDTSHP 816 L T P Sbjct: 507 WFTMTLIKTDLP 518 >gi|320354978|ref|YP_004196317.1| integral membrane sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320123480|gb|ADW19026.1| integral membrane sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 942 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 130/225 (57%), Gaps = 14/225 (6%) Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 S FLA +SHEIRTP+ AIIG + + + R P G + ++ + S + +L I+ND+L Sbjct: 269 SLFLANMSHEIRTPMNAIIGMTRLALDNRPEP-GQRKLLQT---VKDSADSLLGILNDIL 324 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA--DLRS 703 D SKIE+G++ L +P L + + IS +++ A EK + + S + ++P ++ DLR Sbjct: 325 DFSKIEAGQLLLSKKPFVLGQLMETMISALKVPAAEKGLTLEYSISPDLPAVIIGDDLR- 383 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVIL--RVRDTGVGMTNYELEKAM 757 ++QI N++ NAI FT +GG + +S S+ + +L RVRD+G+G+ + E+ Sbjct: 384 LRQIFFNLVGNAIKFTETGG-VTVSIEPVSDGPPQQGCLLHCRVRDSGIGIPKEQQERIF 442 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 F Q S + GTGLGL +++ + + G+ ++ S P G+ Sbjct: 443 NTFEQADGSSVRKYGGTGLGLTISRQLTEMMGGRMWVESEPGVGS 487 >gi|302671320|ref|YP_003831280.1| two component system histidine kinase/response regulator hybrid protein [Butyrivibrio proteoclasticus B316] gi|302395793|gb|ADL34698.1| two component system histidine kinase/response regulator hybrid protein [Butyrivibrio proteoclasticus B316] Length = 942 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 122/224 (54%), Gaps = 10/224 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FL+ +SH+IRTP+ AI+G +E++ + Y+ I +G +L ++ND+ Sbjct: 344 KSHFLSTMSHDIRTPMNAILGLNEMVLRDSH----EEEIVAYSESIRTAGRTLLGLINDI 399 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRS 703 LD SKIE+GKM++ S +++ +++VQ+ A +K + NIP IL D Sbjct: 400 LDFSKIEAGKMDIINVDYSFASLLNDLVNMVQVKAEDKGLAFNLDVDRNIPVILNGDEIR 459 Query: 704 VKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMK 758 +KQ+ NILSNA+ +T G + S +++ L V DTGVG+ ++++ K Sbjct: 460 IKQVITNILSNAVKYTKEGSINFKATFEKVKDSPDQIYLNVSVSDTGVGIKPEDMKRLFK 519 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 F +I S+ EGTGLG+ +A++ ++ + S KG+ Sbjct: 520 AFERIEESKNRNVEGTGLGMSIAQSFLNMMGSHIEVESEYGKGS 563 >gi|260170560|ref|ZP_05756972.1| two-component system sensor histidine kinase/response regulator, hybrid ('one component system') [Bacteroides sp. D2] Length = 808 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 125/250 (50%), Gaps = 11/250 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E + K +L +K+ AE S KS FLA +SHEIRTPL AI+GFS +I Sbjct: 421 DVTELEMMKRELLSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESDDAEER 480 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 Y N ++ + +L ++N++LD+SKIESG + F P SL E ++ Sbjct: 481 KT----YYNIVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCREVYD-AHIFR 535 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + + + ++ I D V Q+ N++ NA+ FT G I + +++ Sbjct: 536 TPQGVSLVYEPSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS--ISYGYKLVDNQIVF 593 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG G+ ++ + + F ++ N Q GTGLGL + K++V+ GK + S + Sbjct: 594 HVTDTGTGIEPEKVGRVFERFAKLNNHAQ----GTGLGLSICKSIVERLGGKISVSSEFS 649 Query: 800 KGTLIEIIFP 809 KGT P Sbjct: 650 KGTTFTFTLP 659 >gi|313499779|gb|ADR61145.1| Virulence sensor protein bvgS [Pseudomonas putida BIRD-1] Length = 1210 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 90/259 (34%), Positives = 136/259 (52%), Gaps = 14/259 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DISE +Q +L AK+ A+ + KS FLA +SHEIRTP+ A+IG E+ +K G + Sbjct: 686 DISERRQLVLELRQAKQQADDANRAKSTFLATISHEIRTPMNAVIGMLELAVKRADQGRV 745 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + +E A++ S +L ++ D+LDI +IESG ++L E V L V + Sbjct: 746 -DRSALELAHH---SAKDLLGLIGDILDIVRIESGHLSLAPEVVDLAALVESVARIFDGQ 801 Query: 679 ANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----HTS 733 A +K + + A +L D KQ+ N++SNAI FT GQ+ I TS Sbjct: 802 ARQKGLALEVQIAPAARCHVLLDPLRFKQVLSNLVSNAIKFTEH-GQVRICVRLLDDGTS 860 Query: 734 NEEVI-LRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGK 791 V+ L VRD+G+G+ +L++ PF Q P+SQ R GTGLGL + + + + G Sbjct: 861 TPAVLELEVRDSGIGIHPDDLQRLFNPFIQANPHSQGARA-GTGLGLAICRNLCEMMGGS 919 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + S GT + + PL Sbjct: 920 LSMKSLEDVGTQVRLKMPL 938 >gi|298385109|ref|ZP_06994668.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298262253|gb|EFI05118.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 720 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 81/255 (31%), Positives = 128/255 (50%), Gaps = 11/255 (4%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T +++ K+ + L AK AE+ ++ KS FLA +SHEIRTPL AI+GFS ++ + G Sbjct: 467 TSMTVTQRKEMEEALVQAKVKAEEANTLKSSFLANISHEIRTPLNAIVGFSSLLVSAERG 526 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + EY N I+ + L+L +++D+LD+SKIE+G M + PV + E + Sbjct: 527 ISEEKQ--EYINIIENNNTLLLQLISDVLDLSKIEAGTMEFDYAPVDVHGLFIELEDTFR 584 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 L + I I + AD + Q+ +N+++NA+ FT G I E+ Sbjct: 585 LRNKKSGICICYHRRTTECVVKADRNRLVQVMMNLMNNAVKFTGEGS---IEFGFDVRED 641 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 L V DTG G+ LE+ F ++ + Q GTGLGL + +A+V+ GK Sbjct: 642 GFLHFYVTDTGCGIPEERLEEIFGNFVKLNSFVQ----GTGLGLTICRAIVERMGGKIGA 697 Query: 795 FSTPAKGTLIEIIFP 809 S +G+ P Sbjct: 698 VSRLGQGSTFWFTLP 712 >gi|326317129|ref|YP_004234801.1| histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373965|gb|ADX46234.1| histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 299 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 121/234 (51%), Gaps = 8/234 (3%) Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 K + KS FLA +SHE RTP+++I + ++ + GPL N +I + D Sbjct: 58 KATEMKSRFLAYMSHEFRTPISSIRSIARLLADHVDGPL-NAEQSRQVAFIQATAMEFSD 116 Query: 640 IVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 +V+DLLD++KIE+G++++ FE V L +A+ + + A + + N+P Sbjct: 117 MVDDLLDLAKIEAGRVDISPAWFEMVDLFQALR---GMFKPVATNPELNLVFEEPRNLPA 173 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 + D R + QI N +SNA+ FTP G ++ +S E V V DTG+G+ + Sbjct: 174 LFTDDRKLSQILRNFISNALKFTPRG-EVRVSAQACDGERVRFSVADTGIGIAPEFHARV 232 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F Q+ + Q R GTGLGL L + + + G + S P +G++ + P+ Sbjct: 233 FEDFSQVGSPLQKRLRGTGLGLALCRQLAELLGGAVELQSVPGEGSVFSVTLPV 286 >gi|254478763|ref|ZP_05092131.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Carboxydibrachium pacificum DSM 12653] gi|214035275|gb|EEB75981.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Carboxydibrachium pacificum DSM 12653] Length = 456 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 99/372 (26%), Positives = 184/372 (49%), Gaps = 42/372 (11%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHY 512 L +IL++ ++G+ + IL N + K+ G +D+ R+ F V + + Sbjct: 114 LEAILKSIANGVIAFDNAERILMMNDSAKKILGIEEKDLTGRRVFEV--------IRSSK 165 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKL----LSLRIIIKKL--PFSSC---YSLTMHDISE 563 L E+ +TL K + S+K +L L++ I + P S + L + DI+E Sbjct: 166 LYEVF-----ETLRKNKVLSSKSLELNFFNKHLKVYISPILHPVSHVNLGFVLVIDDITE 220 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 + K +S+F+A VSHE+RTPLT+I GF E +++ G + NP Sbjct: 221 MR--------------KLEKMRSEFVANVSHELRTPLTSIRGFIETLRS---GAIENPEA 263 Query: 624 IE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 E + + ID + ++ND+L +S+IE+ K E + +D+ + + + +++ A +K Sbjct: 264 REKFLDIIDFEAERLTRLINDILTLSEIENVKEGYPVEKIEMDKEIEDILYIMEKAAKDK 323 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 I ++ I+A+ Q+ +N++ N I +T GG + +S T E++I+ V Sbjct: 324 SITLKRDLNCGNLTIIANRDRFHQMMINLIDNGIKYTQEGGFVKVS-TRLEGEKIIIEVE 382 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D G+G+ ++ + + F ++ S+ + GTGLGL + K +V++ G+ + S KGT Sbjct: 383 DNGIGIPKDKIPRLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEISVESEVGKGT 442 Query: 803 LIEIIFPLYDTS 814 I F D + Sbjct: 443 KFTIRFNRKDLT 454 >gi|28868689|ref|NP_791308.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28851928|gb|AAO55003.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] Length = 1213 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 127/262 (48%), Gaps = 8/262 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K + +L A ++A + + KS FLA +SHEIRTP+ AIIG E+ Q Sbjct: 692 DITERKLLEQQLEQAVRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLELECEQALRRGE 751 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P + RS ++ ++ + LD+++IE+G M L L ++L A Sbjct: 752 EP--TQGLQVAHRSATELVALIGESLDLARIEAGGMQLSLVVTPLQTFFEGVLALFSAQA 809 Query: 680 NEKRILIRTSFANNI--PRILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSN 734 EK + +R A L LR ++Q+ N+L NA+ FT G ++ +S Sbjct: 810 REKGLELRLELAEQARGDYWLDPLR-LRQVVHNVLGNALKFTRQGAVVVKVEVSDDPPDA 868 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V + + D+GVG+ ++ +PF Q + R G+GLGL + + +V+ G + Sbjct: 869 SRVRIGIMDSGVGIEPARQQQIFQPFTQAADDTAARYGGSGLGLSITRQLVELMKGDISL 928 Query: 795 FSTPAKGTLIEIIFPLYDTSHP 816 S P KGT + + PL + P Sbjct: 929 HSEPGKGTRVTVDVPLARVTEP 950 >gi|23099619|ref|NP_693085.1| two-component sensor histidine kinase [Oceanobacillus iheyensis HTE831] gi|22777849|dbj|BAC14120.1| two-component sensor histidine kinase involved in phosphate regulation [Oceanobacillus iheyensis HTE831] Length = 453 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 107/399 (26%), Positives = 187/399 (46%), Gaps = 51/399 (12%) Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 K N NM + I+ + M+ E QL +I++ G+ +I+ +G + NR Sbjct: 96 KVNTLARNMSEIAIQEQ----------MQSE--QLTTIVDNMQSGLVLIDEKGYVHVVNR 143 Query: 480 AVSKLFGYPVEDILRKP--FTVFLEQNT-PSVMNHYLTEIL---SLDLRQTLEKITLGST 533 ++FG E R + VF +N +V +L E S R+ L KI + Sbjct: 144 KFLEMFGEE-ESNYRGHLYYDVFENENVHETVQKTFLYEETVKKSFVHREGLNKIYVEVV 202 Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 I + L ++DI+E K KL +K DF+A VS Sbjct: 203 GAP-------IFNERNMLKGAVLVLYDITELK----KLEKMRK----------DFVANVS 241 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HE+RTP+T+I GF+E + + + +P E+ I + + + ++ DLL +S++E Sbjct: 242 HELRTPITSIRGFAETLLDNN---ITDPATKEFMEIIYKESHRLQLLIEDLLALSRLERE 298 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL---ADLRSVKQIALN 710 L + + + V E + + A K + +F +P L AD +KQ+ +N Sbjct: 299 DFRLLIDNYDVRQMVEEILPQLHQKAENKNL----TFDLEVPDQLTMRADKDRMKQVLIN 354 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 ++ N+IH+TPSGG I ++ + ++ + +V+D+G+GM + + F ++ ++ Sbjct: 355 LIDNSIHYTPSGGDICLAISEETDV-IHFQVKDSGIGMDEKSQTRVFERFYRVDKARSRN 413 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL + K +V+ + GK + ST +GT I I P Sbjct: 414 TGGTGLGLAIVKHIVEVHKGKIDVESTLNQGTTIHIYIP 452 >gi|237653493|ref|YP_002889807.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] gi|237624740|gb|ACR01430.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] Length = 1407 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 100/384 (26%), Positives = 169/384 (44%), Gaps = 29/384 (7%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 ++R+ E + QL +E + + I I N I N A GY E ++ + + Sbjct: 622 DQRRAETSLRQLALAVEQSPESIVITNLSAEIEYVNAAFLATTGYTREQVIGRNPRILQS 681 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHD 560 TP + L+ + E + ++ E+ + I + P S Y D Sbjct: 682 GRTPRATYDAIWAALTAEQTWKGELVNRKASGEDYVEFAHIAPLRQPDGRISHYVAVKED 741 Query: 561 ISEWKQEKNKLS----HAKKIAEKESSH--------------KSDFLARVSHEIRTPLTA 602 I+E K+ +L H + + + ++ KS FLA +SHEIRTP+ A Sbjct: 742 ITEKKRLGEELDRHRHHLEDLVTQRTAELAQARQQAEAASQAKSAFLANMSHEIRTPMNA 801 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 IIG + +++ P + R I+ SG +L ++ND+LD+SKIE+GK++L E Sbjct: 802 IIGLTHLLRKDGVTPQQDGRL----EQIEASGRHLLGLINDILDLSKIEAGKLDLALEDF 857 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPS 721 L + SL++ A K + I + +P L D ++Q N+ NA+ FT Sbjct: 858 HLSAVLDHVASLIRPSAQSKGLHIELD-GDAVPTWLRGDPMRLRQCLFNLAGNAVKFTER 916 Query: 722 GGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 G ++ + E V V DTG+G+T + ++ F Q + GTGLGL Sbjct: 917 GSIVLRAKLLKDGAEGLQVRFEVEDTGIGVTPAQGQRLFHVFQQAEVGTTRKYGGTGLGL 976 Query: 779 PLAKAMVDANMGKFYIFSTPAKGT 802 L + + G+ + S P +G+ Sbjct: 977 ALTRNLAQMMGGEAGMDSIPGEGS 1000 >gi|225405520|ref|ZP_03760709.1| hypothetical protein CLOSTASPAR_04740 [Clostridium asparagiforme DSM 15981] gi|225042932|gb|EEG53178.1| hypothetical protein CLOSTASPAR_04740 [Clostridium asparagiforme DSM 15981] Length = 722 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 101/358 (28%), Positives = 177/358 (49%), Gaps = 44/358 (12%) Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-----E 536 ++ G P E+ L++ +Q S L IL G T+E E Sbjct: 364 GRILGIPAEEFLKQE-----QQEQDSAFRSKLQAILEEPWPSE------GCTREVHTYNE 412 Query: 537 KL---LSLRIIIKKLPF-----SSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 +L + L+I+I PF C Y++T D+++ ++ K++ A +AE+ ++ KS+ Sbjct: 413 RLHRDMWLKILI--CPFLLGDEKKCLYAVT--DVTQEHNDREKIAAAVVVAEQANAAKSN 468 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP-RYIEYANYIDRSGNLVLDIVNDLLD 646 F + +SH++RTP+ I+G + + K LG+ R ++ N ID S +L ++ND+LD Sbjct: 469 FFSSMSHDMRTPMNGIVGMTTIAKR----SLGDQDRVLDCLNKIDFSSRHLLGLINDVLD 524 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP--RILADLRSV 704 +SKIESGK+ L EP L E + ++++ K + +F NI R++ D + Sbjct: 525 MSKIESGKLALVCEPFDLGELLLGLEAILRPQCESKGQTL--TFTVNIRHLRLMGDTLRL 582 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPF 760 QI +N+LSNA+ FT GG + + V D G+G+ + PF Sbjct: 583 NQIFMNLLSNAVKFTQEGGAVSFTAQELEQRGNSPTFRFTVADNGIGIAQEAQQIIFTPF 642 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSHP 816 ++ N+ + EGTGLGL + K ++ A G+ + S P +G+ +++ P+ + P Sbjct: 643 ERVSNTAVHQIEGTGLGLAITKNLITAMGGQITLKSAPGQGSAFTVDLDLPMQEGELP 700 >gi|153006472|ref|YP_001380797.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152030045|gb|ABS27813.1| histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 421 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 77/270 (28%), Positives = 134/270 (49%), Gaps = 12/270 (4%) Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA-----EKESSHKSDFLARVSHEIRTPL 600 + L FSS L + E+ L +A EK ++ FLA +HE+R+P+ Sbjct: 150 RYLGFSSVRELVREQGAAL--ERTALEREAALARASDLEKVDRLRAQFLAHATHELRSPV 207 Query: 601 TAIIGFSEVIKNQ-RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 AI+ +E+++ G L + R + R+ + VN++LD+SK E+G+M++ Sbjct: 208 NAIVALAELVRMACERGDLEHVRA--RLPMLLRAAATLRGTVNNILDLSKAEAGRMDVTV 265 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 PV+L E V+E + +L EK + + P I +D + V+QI +N++SNA FT Sbjct: 266 GPVNLAELVAEVAATARLLVGEKPVAVEVELPGA-PSITSDAQKVRQILVNLVSNAAKFT 324 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 + G I ++ + VRDTG G+ +L + PFGQ+ + EG GLGL Sbjct: 325 -ARGAIRVTAVAEGEGGAAVSVRDTGCGIAEDDLPRLFVPFGQLEEAVTKSHEGPGLGLV 383 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + +++ + G+ + S +G+ + P Sbjct: 384 ITRSLTELLGGRVEVASRRGEGSTFTVHLP 413 >gi|115375839|ref|ZP_01463090.1| sensor histidine kinase/response regulator [Stigmatella aurantiaca DW4/3-1] gi|310820280|ref|YP_003952638.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115367149|gb|EAU66133.1| sensor histidine kinase/response regulator [Stigmatella aurantiaca DW4/3-1] gi|309393352|gb|ADO70811.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 1171 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 128/233 (54%), Gaps = 3/233 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ S +KS+FLA +SHE+RTPL + + ++++ + + G L + + +++A I +GN +L Sbjct: 480 ERTSRYKSEFLANMSHELRTPLNSSLILAKLLADNKEGNLTSEQ-VKFAQTISSAGNDLL 538 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++ND+LD+S+IE+GK+ + E V L V + Q A EK++ S ++ L Sbjct: 539 ALINDILDLSRIEAGKVEVQPEVVILRRTVEALLRTFQPVAQEKKLGFSISVQEDVAEKL 598 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + QI N+LSNA FT G++ + +V VRDTG+G+ ++ E Sbjct: 599 ETDPQRFGQILRNLLSNAFKFTEK-GEVSLRVFPVGPGKVGFAVRDTGIGIAPHQQELIF 657 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F Q S + G+GLGL +++ + G+ + S P +G+ + P+ Sbjct: 658 EAFRQADGSTHRKYGGSGLGLSISRDLARLLGGEVTVQSQPGEGSTFTLTLPV 710 >gi|186683828|ref|YP_001867024.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186466280|gb|ACC82081.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1888 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 133/246 (54%), Gaps = 12/246 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +++ L A A+ + KS+FLA +SHE+RTPL AI+GF++++ + R L Sbjct: 1391 QRQSQALQEAVITADAANRAKSEFLANMSHELRTPLNAILGFTQIMSHDR--ALSTEHQQ 1448 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 A I+R+G +L+++ND+L++SKIE+G++ L+ L + +++ A K + Sbjct: 1449 NLA-IINRAGEHLLNLINDILEMSKIEAGRITLNLNSFDLIRLLENLEEMLRFRATSKGL 1507 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI----- 738 + + + +P+ I AD ++Q+ LN+L NAI FT +G ++ E+++ Sbjct: 1508 ELNFEYTSYLPQYIQADESKLRQVLLNLLGNAIKFTDTGRVMLRVAMENMGEKILPHPPH 1567 Query: 739 --LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V DTG G+ E+ + FGQ ++ + +GTGLGL +++ V+ G + S Sbjct: 1568 LFFEVTDTGRGIAPQEINLLFEAFGQTETGRKSQ-QGTGLGLAISRKYVELMGGDISVTS 1626 Query: 797 TPAKGT 802 +G+ Sbjct: 1627 IIGEGS 1632 >gi|325838906|ref|ZP_08166712.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Turicibacter sp. HGF1] gi|325490647|gb|EGC92958.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Turicibacter sp. HGF1] Length = 623 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 79/248 (31%), Positives = 128/248 (51%), Gaps = 8/248 (3%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + +L +A K A + K+ FLA+VSHE++TPL AI G+ +++K + NP+ + Sbjct: 371 QSQELEYAWKKALVANQAKTHFLAKVSHELKTPLNAIKGYIQLLK----LSIDNPKQLRQ 426 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 ID S +L+L V++LLD S IE GK+ L + + L + L + ++K + Sbjct: 427 IEIIDHSSDLLLKQVDELLDFSVIEDGKVKLEIDTIDLFQTAHVIEELFIINTSKKSLDY 486 Query: 687 RTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVR 742 + IP +L D +KQI +N++SNA+ FT G ++ + + EV L RV+ Sbjct: 487 VVNIDEQIPSVLYGDEARIKQIIINLMSNALKFTEHGKIEVSFDLDYQTETEVYLSIRVK 546 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG G+ +L F Q NS + GTGLGL ++K + + G + S G+ Sbjct: 547 DTGKGIAENKLNSIFDSFTQENNSISRQFGGTGLGLSISKRLAEVMGGNLIVESQVNVGS 606 Query: 803 LIEIIFPL 810 + PL Sbjct: 607 TFTLFLPL 614 >gi|325262786|ref|ZP_08129522.1| sensory box histidine kinase/response regulator [Clostridium sp. D5] gi|324031880|gb|EGB93159.1| sensory box histidine kinase/response regulator [Clostridium sp. D5] Length = 723 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 80/269 (29%), Positives = 144/269 (53%), Gaps = 14/269 (5%) Query: 552 SCYSLTMHDISEWKQEKNK----LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 S YS+ + D+++ ++E+ + L A + A +S K++FL+ +SH+IRTP+ AI+G + Sbjct: 273 SFYSVGI-DVTKEREEQERQSKALEEAYQTARVANSAKTNFLSSMSHDIRTPMNAIMGMT 331 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 + K + + ID S +L+++N++LD+SKIESGK++L E V+L E Sbjct: 332 TIAKANLDS---KEKVCSCLDKIDTSSQHLLNLINEVLDMSKIESGKIDLTLEEVNLHEL 388 Query: 668 VSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 + + + ++K R+S A ++AD +KQ+ LN+LSNAI +TP GG+I Sbjct: 389 LKSVSEICRPLISQKHQEFRSSIAQVRHKEVIADGERLKQVMLNLLSNAIKYTPEGGRIS 448 Query: 727 --ISTTHTSN---EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 I+ ++ N + DTG+G++ +PF + + + + +GTGLG+ + Sbjct: 449 LRINELYSPNPKKSQYEFSCIDTGIGISEDFRPYVFEPFWRAEDPRISKSQGTGLGMAIT 508 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + +V G + S G+ PL Sbjct: 509 ENIVRMMNGTIRVESKTGAGSKFTASIPL 537 >gi|288941589|ref|YP_003443829.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288896961|gb|ADC62797.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 755 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 133/247 (53%), Gaps = 8/247 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E KQ + AK AE ++ KSDFLA +SHE+RTPL A+IG ++V++ PL Sbjct: 136 DITERKQTERAQVEAKLAAEAATAAKSDFLAHMSHELRTPLNAVIGLTQVLEQANL-PLE 194 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 ++ I +G +L I ND+LD++KIE+ ++ + P +L + SL A Sbjct: 195 QRSLVQ---RIRLAGQAMLQISNDILDLAKIEANQLAIASRPCTLSGLLQRLESLQGEAA 251 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV 737 K + + + A + ++L D ++QI N++SNAI FT G ++ T S Sbjct: 252 RAKGVTLEIAPAPALSGQVLTDPLRLEQILANLVSNAIKFTDRGTVRVWTETLSVSESSA 311 Query: 738 ILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 LR VRDTG+G+ LE+ PF Q +S R GTGLGL ++K +V+ G + Sbjct: 312 RLRFVVRDTGIGIAPSALEQLFTPFIQADSSITRRFGGTGLGLSISKRLVELMGGTIGVE 371 Query: 796 STPAKGT 802 S +G+ Sbjct: 372 SCEGQGS 378 >gi|27365916|ref|NP_761444.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6] gi|27362065|gb|AAO10971.1| Signal transduction histidine kinase [Vibrio vulnificus CMCP6] Length = 574 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 136/242 (56%), Gaps = 7/242 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L+ A++ +E+ + KS+FLA +SHE+RTPL +++G +V+K + +I ++ Sbjct: 200 ELALAREESERANRAKSEFLAMMSHELRTPLNSVLGMLDVLKQSDM----SAGHINLLSH 255 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 ++ S L+L I++D+LD+SKIESG+ +L + +++++ V+ +S QL A K + I S Sbjct: 256 MESSAGLLLAIISDILDLSKIESGEFSLSPQWININDTVTFVVSQQQLVAATKGLNIELS 315 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + R D + Q+ N++ NA+ FT GQI I + N+E+ + V DTG+G+ Sbjct: 316 IELDDKRHYWLDPSRLSQVLFNLIGNAVKFTQQ-GQIDIR-VNLENDELSISVIDTGIGI 373 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 ++ F Q +S + GTGLGL + K +V+ G + S KG+ + Sbjct: 374 EKDKISSLFTAFKQADSSITRKFGGTGLGLAITKHLVELMSGTVRVSSQFGKGSTFVVKI 433 Query: 809 PL 810 P+ Sbjct: 434 PV 435 >gi|288574524|ref|ZP_06392881.1| histidine kinase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570265|gb|EFC91822.1| histidine kinase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 615 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHEIRTP+ ++G + + P G Y+E A +G +L +++ +LD+ Sbjct: 238 FLANMSHEIRTPINVVLGMTNLALESADIPDGPREYLEDARL---AGRELLKLIDGILDL 294 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQ 706 S++ESG+M+L E L E + + ++ + + I F PR++ D ++Q Sbjct: 295 SRVESGEMSLSLESCDLYELCRSVMDMTRVRNSSDELAIELVFDEYAPRLVKCDTLRMRQ 354 Query: 707 IALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQI 763 + L + NA+ FT G +++S + E +R V+DTG+G++ + + F Q+ Sbjct: 355 VLLILTENAVKFTERGSVTLVVSMVRRAEGEATIRFAVKDTGIGISEDKRDHIFGTFYQV 414 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +S+ R +G GLGL +AK +V+ G+ ++ S KG+ + PL Sbjct: 415 DDSRSKRHKGAGLGLSIAKQIVEIMGGRLWLKSEEGKGSTFFVDVPL 461 >gi|220907616|ref|YP_002482927.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219864227|gb|ACL44566.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 887 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 124/247 (50%), Gaps = 36/247 (14%) Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHEIRTP+ A+IG + ++ + P+ +Y I SG +L ++ND+LD Sbjct: 334 FLAVMSHEIRTPMNAVIGMTTLLLDTSL----TPQQRDYVETIHGSGEALLCLINDILDF 389 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQ 706 SKIESGK+ L P +L + EAI L+ A EK I + + P +I D+ ++Q Sbjct: 390 SKIESGKLELETRPFNLRTCLEEAIDLLATRATEKGIELAYLISPPTPEQIQGDVIRLRQ 449 Query: 707 IALNILSNAIHFTPSGGQIIISTT------------------------------HTSNEE 736 I +N+++NAI FT G+++IS T E Sbjct: 450 ILVNLINNAIKFT-EAGEVVISVTAREVFPLRSQLSGGEEPPFSVSAAYETLPYEMPQYE 508 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + V DTG+G+ L++ +PF Q+ +S + GTGLGL ++K + + G+ ++ S Sbjct: 509 IQFAVEDTGIGIPIDRLDRLFRPFSQVDSSVRRHYGGTGLGLAISKKLAETMGGRIWVSS 568 Query: 797 TPAKGTL 803 G + Sbjct: 569 RDETGAI 575 >gi|90415638|ref|ZP_01223572.1| sensor histidine kinase with a response regulator receiver domain [marine gamma proteobacterium HTCC2207] gi|90332961|gb|EAS48131.1| sensor histidine kinase with a response regulator receiver domain [marine gamma proteobacterium HTCC2207] Length = 1142 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 74/248 (29%), Positives = 137/248 (55%), Gaps = 7/248 (2%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L +++I ++ +L +K+ A+ + KS +L R+SHE+RTPL +++G++++++ Sbjct: 660 LLINEIKAHERTDLELQQSKEKADAANIAKSRYLERISHELRTPLNSVMGYAQLLEGADD 719 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 PL PR E + S + D++ L+DISKIE+G+++LH V + + + + + Sbjct: 720 IPL--PRR-ESIKVMRSSSEHLTDLIEGLVDISKIEAGRLDLHRNKVDMLAMIEQLMYMF 776 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 Q+ A K I + S +P + AD + ++Q+ +N++SNAI FTP G + N Sbjct: 777 QIQAQSKNISLNFSHQERLPETVFADGKRLRQVMINLISNAIKFTPEGS--VSVDLKYRN 834 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + V DTGVG+ + ++ + + F +I N + G+GLGL + +A+V G I Sbjct: 835 QVAYFSVTDTGVGIEDEDISRISEAFVRIANPMH-QVAGSGLGLAITQALVHRMGGDLSI 893 Query: 795 FSTPAKGT 802 S +G+ Sbjct: 894 ESRFGEGS 901 >gi|288940787|ref|YP_003443027.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288896159|gb|ADC61995.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1377 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 124/246 (50%), Gaps = 7/246 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI ++ + +L+H ++AE KS FLA +SHEIRTP+ AI+G + +++ L Sbjct: 735 DIRPQREMEAELAHRAELAESAVRAKSAFLANMSHEIRTPMNAILGLAHLLRRD----LI 790 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +P I + I+ + +L ++ND+LD+SKIE+GK+ L E S V + SL+ A Sbjct: 791 DPANINRLDKIESAARHLLAVINDILDLSKIEAGKLQLSDENFSAVMLVDQVSSLILDEA 850 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 K + ++ +P + D+ ++Q LN SNA+ FT +G I + E Sbjct: 851 RAKGLSLKVDLDPELPWMRGDVTRLRQALLNYASNAVKFTHTGFVTIRVRLQERDAEGLT 910 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V V DTG+G+ + + + F Q S R GTGLGL + + G+ S Sbjct: 911 VRFEVEDTGIGIPPDKQARLFQAFEQADTSTTRRYGGTGLGLAITAQLARMMGGEAGADS 970 Query: 797 TPAKGT 802 +G+ Sbjct: 971 VAGRGS 976 >gi|259500799|ref|ZP_05743701.1| histidine kinase [Lactobacillus iners DSM 13335] gi|302190751|ref|ZP_07267005.1| two-component system sensor histidine kinase [Lactobacillus iners AB-1] gi|309804083|ref|ZP_07698164.1| PAS domain S-box protein [Lactobacillus iners LactinV 11V1-d] gi|312871187|ref|ZP_07731285.1| PAS domain S-box protein [Lactobacillus iners LEAF 3008A-a] gi|312873315|ref|ZP_07733370.1| PAS domain S-box protein [Lactobacillus iners LEAF 2052A-d] gi|312874960|ref|ZP_07734979.1| PAS domain S-box protein [Lactobacillus iners LEAF 2053A-b] gi|325913630|ref|ZP_08175992.1| PAS domain S-box protein [Lactobacillus iners UPII 60-B] gi|259167493|gb|EEW51988.1| histidine kinase [Lactobacillus iners DSM 13335] gi|308163851|gb|EFO66117.1| PAS domain S-box protein [Lactobacillus iners LactinV 11V1-d] gi|311089705|gb|EFQ48130.1| PAS domain S-box protein [Lactobacillus iners LEAF 2053A-b] gi|311091195|gb|EFQ49584.1| PAS domain S-box protein [Lactobacillus iners LEAF 2052A-d] gi|311093201|gb|EFQ51547.1| PAS domain S-box protein [Lactobacillus iners LEAF 3008A-a] gi|325476989|gb|EGC80139.1| PAS domain S-box protein [Lactobacillus iners UPII 60-B] Length = 612 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 98/383 (25%), Positives = 179/383 (46%), Gaps = 45/383 (11%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E +L ++L +DG+ +R G I N ++ +P T L Sbjct: 258 ERRRLDNVLMHMTDGVIATDRHGNITIINETALNFLDKTENEVKGEPITQLLG------- 310 Query: 510 NHYLTEILSLDLRQTLEKITLGS---TKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEW 564 L E+ DL T +++ + + T +E +L +I + F S +HDI+E Sbjct: 311 ---LKEVTIQDLMSTQQELIVTANVNTHDELILHADFSLIQRVTGFVSGLICVLHDITE- 366 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQRFGPLG 619 Q+KN+ + + F++ VSHE+RTPLT++ + E + KN+ P Sbjct: 367 -QQKNE------------NEQRQFVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAP-- 411 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 ++ I ++ ++NDLL++S+++ G + + E V+L++ +S ++ + Sbjct: 412 -----QFLGVIQNETERMIRMINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMML 466 Query: 680 NE---KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 K+ IR F + + D + Q+ NI++NAI ++P GG I I T ++ Sbjct: 467 KNDGVKKYKIRRIFPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQT-HKH 525 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 VIL V D G+G+ +L + F ++ ++ + GTGLGL ++K +V+A+ GK + S Sbjct: 526 VILSVSDQGLGIPRKDLSRIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADS 585 Query: 797 TPAKGTLIEIIFPLYDTSHPHDC 819 + G+ I P S D Sbjct: 586 SEGNGSTFYISIPYEKMSEEGDM 608 >gi|72160690|ref|YP_288347.1| GAF sensor hybrid histidine kinase [Thermobifida fusca YX] gi|71914422|gb|AAZ54324.1| GAF sensor hybrid histidine kinase [Thermobifida fusca YX] Length = 1406 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 138/242 (57%), Gaps = 14/242 (5%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S +KS+FLA +SHE+RTPL +++ + ++ + L P+ +E+A I ++G+ +L ++ Sbjct: 955 SKYKSEFLANMSHELRTPLNSLLILARLLADNSEKNL-TPKQVEFAQTIYKAGSDLLQLI 1013 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILAD 700 N++LD+SK+E+G+M L+ VS+ + V + + A+EK + + ++P ++ D Sbjct: 1014 NEILDLSKVEAGRMELNPSHVSISQLVDYVEASFRPLASEKGLAFAVEVSPDVPDQLWTD 1073 Query: 701 LRSVKQIALNILSNAIHFTPSGG-QIIIS----------TTHTSNEEVI-LRVRDTGVGM 748 + ++Q+ N+LSNA+ FT SG +++I T T +EVI V DTG+G+ Sbjct: 1074 EQRLQQVLRNLLSNAVKFTSSGEVRLVIEPAWAVEDIDVDTFTDPDEVIAFSVIDTGIGI 1133 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L+ + F Q R GTGLGL +++ M + G+ + ST +G+ ++ Sbjct: 1134 PEDKLQLIFEAFHQGDGGTSRRFGGTGLGLSISRNMAELLGGEIRVSSTVGEGSTFTLLL 1193 Query: 809 PL 810 P+ Sbjct: 1194 PV 1195 >gi|70730557|ref|YP_260298.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] gi|68344856|gb|AAY92462.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] Length = 945 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 129/255 (50%), Gaps = 9/255 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS KQ + L AK++A+ + K+ FLA +SHEIRTPL ++G E++ + Sbjct: 437 DISARKQIEAALEEAKRLADTANEAKTLFLATMSHEIRTPLYGVLGTLELLSRTQL---- 492 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + +Y I+ S +L ++ D+LD+SKIE+G++ L S + V E I A Sbjct: 493 DNQQKDYLQAIEGSSGTLLQLICDVLDVSKIEAGQLALELSEFSSLDLVHEIIQGYAAAA 552 Query: 680 NEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 K + +P I L D+ ++QI N+L+NA+ FT +G ++ T + + E Sbjct: 553 QAKGLQFYACVDPQLPEILLGDVTRIRQILSNLLNNAVKFTDTGRIVLRVRTESRDGERS 612 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++ +V DTG G+ + +PF Q + + GTGLGLP+ + + G + Sbjct: 613 NILWQVSDTGRGIAQDDQTLIFEPFYQTEGNTNVIA-GTGLGLPICQRLTQLMNGNIRMV 671 Query: 796 STPAKGTLIEIIFPL 810 S G+ + PL Sbjct: 672 SELGLGSSFTLTLPL 686 >gi|320156372|ref|YP_004188751.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O] gi|319931684|gb|ADV86548.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O] Length = 569 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 136/242 (56%), Gaps = 7/242 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L+ A++ +E+ + KS+FLA +SHE+RTPL +++G +V+K + +I ++ Sbjct: 195 ELALAREESERANRAKSEFLAMMSHELRTPLNSVLGMLDVLKQSDM----SAGHINLLSH 250 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 ++ S L+L I++D+LD+SKIESG+ +L + +++++ V+ +S QL A K + I S Sbjct: 251 MESSAGLLLAIISDILDLSKIESGEFSLSPQWININDTVTFVVSQQQLVAATKGLNIELS 310 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + R D + Q+ N++ NA+ FT GQI I + N+E+ + V DTG+G+ Sbjct: 311 IELDDKRHYWLDPSRLSQVLFNLIGNAVKFTQQ-GQIDIR-VNLENDELSISVIDTGIGI 368 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 ++ F Q +S + GTGLGL + K +V+ G + S KG+ + Sbjct: 369 EKDKISSLFTAFKQADSSITRKFGGTGLGLAITKHLVELMSGTVRVSSQFGKGSTFVVKI 428 Query: 809 PL 810 P+ Sbjct: 429 PV 430 >gi|256839617|ref|ZP_05545126.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256738547|gb|EEU51872.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 771 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 131/251 (52%), Gaps = 9/251 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I K +N L A++ AE+ K FLA +SHEIRTPL AI+GFS+++ + PL Sbjct: 518 NIQRIKDTENSLIAARQKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLLNSDM--PLE 575 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 E+ + I ++ +L+L ++ND+LD+S+IESG M+ +E + L + + + QL Sbjct: 576 PEEKAEFIDLITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMM 635 Query: 680 NEK-RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 E + IR I R +D + Q+ N ++NA+ FT G I + ++ Sbjct: 636 PEGVELKIRVPHEPLIIR--SDHFRLTQVCTNFINNAVKFTAKGYIEIGYELSADGKSIL 693 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V+DTG G+ + + EK + F ++ Q GTGLGL + +++V G + S Sbjct: 694 ISVKDTGKGIPDDKKEKVFERFQKLDEFAQ----GTGLGLAICQSIVHTFHGSISLESEV 749 Query: 799 AKGTLIEIIFP 809 G+ I P Sbjct: 750 GVGSKFTISLP 760 >gi|238760518|ref|ZP_04621653.1| Histidine kinase [Yersinia aldovae ATCC 35236] gi|238701270|gb|EEP93852.1| Histidine kinase [Yersinia aldovae ATCC 35236] Length = 1270 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 76/256 (29%), Positives = 136/256 (53%), Gaps = 11/256 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DIS+ K + +L A+ AE + KS FLA +SHE+RTP+ AI+G E+ I++ + P+ Sbjct: 701 DISQRKTVERELEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLELEIRSDK--PV 758 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + +S ++ +++D++D +KIE+G++++H + + S+ Q Sbjct: 759 EKNTLVT----VSKSAQSLMLLLDDIIDSAKIEAGQLSVHPAVTDFRQEIERMFSIYQPI 814 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736 A+E+ + N IP++L D+ V+Q+ N+L NA+ FT G + T S+EE Sbjct: 815 ADERGLHFSGWLDNQIPQLLMVDMLRVRQVMGNLLGNALKFTEQGSVSVDITWEASDEEQ 874 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + + + DTG+G++ +PF Q + R G+GLGL + ++ G+ + Sbjct: 875 GVMNIDITDTGIGISPAAQATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGQITL 934 Query: 795 FSTPAKGTLIEIIFPL 810 S KGT + I PL Sbjct: 935 ESQLGKGTSLFITLPL 950 >gi|37679852|ref|NP_934461.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] gi|37198597|dbj|BAC94432.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] Length = 569 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 136/242 (56%), Gaps = 7/242 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L+ A++ +E+ + KS+FLA +SHE+RTPL +++G +V+K + +I ++ Sbjct: 195 ELALAREESERANRAKSEFLAMMSHELRTPLNSVLGMLDVLKQSDM----SAGHINLLSH 250 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 ++ S L+L I++D+LD+SKIESG+ +L + +++++ V+ +S QL A K + I S Sbjct: 251 MESSAGLLLAIISDILDLSKIESGEFSLSPQWININDTVTFVVSQQQLVAATKGLNIELS 310 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + R D + Q+ N++ NA+ FT GQI I + N+E+ + V DTG+G+ Sbjct: 311 IELDDKRHYWLDPSRLSQVLFNLIGNAVKFTQQ-GQIDIR-VNLENDELSISVIDTGIGI 368 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 ++ F Q +S + GTGLGL + K +V+ G + S KG+ + Sbjct: 369 EKDKISSLFTAFKQADSSITRKFGGTGLGLAITKHLVELMSGTVRVSSQFGKGSTFVVKI 428 Query: 809 PL 810 P+ Sbjct: 429 PV 430 >gi|304320655|ref|YP_003854298.1| sensory box histidine kinase, hypothetical [Parvularcula bermudensis HTCC2503] gi|303299557|gb|ADM09156.1| sensory box histidine kinase, hypothetical [Parvularcula bermudensis HTCC2503] Length = 935 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 77/304 (25%), Positives = 153/304 (50%), Gaps = 17/304 (5%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-------NTPSV 508 + L + G+A+ +G + NR+ L+ + + + +P L + + Sbjct: 520 ATLNTLAQGVAVFGVDGRLALHNRSFETLWSFSRDQLDDRPHWDSLSEPMAERGRDVDEG 579 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK---LPFSSCYSLTMHDISEWK 565 + I+SL + ++ +E L RI++ LP + +T DI++ + Sbjct: 580 LARLKDRIVSLAHEDRVSRVG----EELTLKDGRILLPATSPLPDGATL-VTFLDITDAR 634 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + L +I E K+ F+ +S+++R PL IIGF+E+++++ GPL N R + Sbjct: 635 EREKDLEIRNQILEDADRIKTRFVDHISYQLRNPLNTIIGFAEMMESEMVGPL-NDRQKD 693 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 YA I + N +LD+VND++D++ I++G++ L + V + + + A L A + I Sbjct: 694 YAATILTASNHLLDLVNDIIDLAAIDAGRLGLELQEVDVRDLLESAAMFAALKAEDSEIS 753 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 ++ +I + AD R +KQ+ N+L+N FT +GGQ+++ + + + V DTG Sbjct: 754 LKVDCPKDIGTLKADERRLKQVLFNLLANGFSFTQAGGQVVLG-ARRDGDAIRIWVEDTG 812 Query: 746 VGMT 749 G++ Sbjct: 813 RGVS 816 >gi|330977289|gb|EGH77244.1| PAS protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 595 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 93/375 (24%), Positives = 164/375 (43%), Gaps = 55/375 (14%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L ++L++ DG+ +I+R+G + N + G+ S + H Sbjct: 259 RLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGW-----------------DESRLGHS 301 Query: 513 LTEILSL-DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-------------- 557 L E L +L + L + G T E L I I YS+T Sbjct: 302 LGEALGRPELDEQLHLVLRGGTLERAPEDLAIEIDGESRLLTYSMTPVSHTKGHILGAVM 361 Query: 558 -MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI-IGFSEVIKNQRF 615 +HD++E + + +S+F+ R SHE+RTP+T + + F + + F Sbjct: 362 VLHDVTEQRAFERV--------------RSEFVLRASHELRTPVTGMHMAFGLLQERLHF 407 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P R + N + ++ ++NDLL+ S+ ++G L P S++ + EA Sbjct: 408 AP--ESREADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLQEAKVRF 465 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A E+ I++ +PR+ AD ++++ N+L NA+ TP G +I E Sbjct: 466 EDQAQEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTPPNG-LIRLQARRHGE 524 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 I+ V D G G+ + + +PF Q+ + G GLGL L K +V + G+ ++ Sbjct: 525 RAIISVEDNGEGIAYGQQGRIFEPFVQVGRKK----GGAGLGLALCKEIVQLHGGRMGVY 580 Query: 796 STPAKGTLIEIIFPL 810 S P +GT + PL Sbjct: 581 SRPGQGTQFYMALPL 595 >gi|315654108|ref|ZP_07907024.1| sensor histidine kinase VicK [Lactobacillus iners ATCC 55195] gi|329919831|ref|ZP_08276782.1| PAS domain S-box protein [Lactobacillus iners SPIN 1401G] gi|315488804|gb|EFU78450.1| sensor histidine kinase VicK [Lactobacillus iners ATCC 55195] gi|328937178|gb|EGG33606.1| PAS domain S-box protein [Lactobacillus iners SPIN 1401G] Length = 612 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 98/383 (25%), Positives = 179/383 (46%), Gaps = 45/383 (11%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E +L ++L +DG+ +R G I N ++ +P T L Sbjct: 258 ERRRLDNVLMHMTDGVIATDRHGNITIINETALNFLDKTENEVKGEPITQLLG------- 310 Query: 510 NHYLTEILSLDLRQTLEKITLGS---TKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEW 564 L E+ DL T +++ + + T +E +L +I + F S +HDI+E Sbjct: 311 ---LKEVTIQDLMSTQQELIVTANVNTHDELILHADFSLIQRVTGFVSGLICVLHDITE- 366 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQRFGPLG 619 Q+KN+ + + F++ VSHE+RTPLT++ + E + KN+ P Sbjct: 367 -QQKNE------------NEQRQFVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAP-- 411 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 ++ I ++ ++NDLL++S+++ G + + E V+L++ +S ++ + Sbjct: 412 -----QFLGVIQNETERMIRMINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMML 466 Query: 680 NE---KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 K+ IR F + + D + Q+ NI++NAI ++P GG I I T ++ Sbjct: 467 KNDGVKKYKIRRIFPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQT-HKH 525 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 VIL V D G+G+ +L + F ++ ++ + GTGLGL ++K +V+A+ GK + S Sbjct: 526 VILSVSDQGLGIPRKDLSRIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADS 585 Query: 797 TPAKGTLIEIIFPLYDTSHPHDC 819 + G+ I P S D Sbjct: 586 SEGNGSTFYISIPYEKMSEEGDM 608 >gi|213969064|ref|ZP_03397203.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] gi|213926062|gb|EEB59618.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] Length = 1213 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 127/262 (48%), Gaps = 8/262 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K + +L A ++A + + KS FLA +SHEIRTP+ AIIG E+ Q Sbjct: 692 DITERKLLEQQLEQAVRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLELECEQALRRGE 751 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P + RS ++ ++ + LD+++IE+G M L L ++L A Sbjct: 752 AP--TQGLQVAHRSATELVALIGESLDLARIEAGGMQLSLVVTPLQTFFEGVLALFSAQA 809 Query: 680 NEKRILIRTSFANNI--PRILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSN 734 EK + +R A L LR ++Q+ N+L NA+ FT G ++ +S Sbjct: 810 REKGLELRLELAEQARGDYWLDPLR-LRQVVHNVLGNALKFTRQGAVVVKVEVSDDPPDA 868 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V + + D+GVG+ ++ +PF Q + R G+GLGL + + +V+ G + Sbjct: 869 SRVRIGIMDSGVGIEPARQQQIFQPFTQAADDTAARYGGSGLGLSITRQLVELMKGDISL 928 Query: 795 FSTPAKGTLIEIIFPLYDTSHP 816 S P KGT + + PL + P Sbjct: 929 HSEPGKGTRVTVDVPLARVTEP 950 >gi|312883424|ref|ZP_07743150.1| sensor protein TorS [Vibrio caribbenthicus ATCC BAA-2122] gi|309369040|gb|EFP96566.1| sensor protein TorS [Vibrio caribbenthicus ATCC BAA-2122] Length = 963 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 131/243 (53%), Gaps = 11/243 (4%) Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 + A+K AE+ + KS FLA +SHEIRTP+ ++G ++++K+ G R+ Y + I+ Sbjct: 457 ARARKEAEQANRAKSAFLATMSHEIRTPMNGVLGTAQLLKDD--GLDSKQRH--YVDVIN 512 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD--EAVSEAISLVQLYANEKRILIRTS 689 RSG +L I+ND+LD SKIE+G +++ P++ D + + LV A EK + + Sbjct: 513 RSGTTLLAILNDVLDYSKIEAGFIDIR--PINFDIHSMIKDTCELVGARAQEKNLKLDYF 570 Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL-RVRDTGVG 747 +++ + D + Q+ N++ NA+ FT +G + + E IL V DTG G Sbjct: 571 IESDVEQYWHGDATRLAQVLNNLVGNAVKFTDAGHVDLYVALNPDYEGYILFEVTDTGCG 630 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + E +PF Q N +G GTGLGL ++K +V+A G+ + ST G+ Sbjct: 631 IDEVEQSTLFEPFTQASNGISSKG-GTGLGLAISKRIVEAMGGEMFFDSTLGVGSRFGFT 689 Query: 808 FPL 810 P+ Sbjct: 690 IPM 692 >gi|282897084|ref|ZP_06305086.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] gi|281197736|gb|EFA72630.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] Length = 638 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 94/387 (24%), Positives = 186/387 (48%), Gaps = 34/387 (8%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 N ++ E +L +++ +DG +I+ ++ N ++F + D++ + +L Sbjct: 265 NIEELTAEKAKLETLVSTIADGAVLIDNNMQVILVNPTARRIFAWEGTDVVGQNLLNYLP 324 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLT 557 + + L E+ S + +I L +E ++RI++ + S ++T Sbjct: 325 HSVQMEITRTLYEMASGERESAEFRIPL---REPTKRTIRILLTTVLDSQRESIKGIAIT 381 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DI+ +++ E+ KS F++ +SHE+RTPL I + E + + +G Sbjct: 382 VQDIT------------REVELNEA--KSQFISNISHELRTPLFNIKTYIETLHD--YGD 425 Query: 618 -LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 LG E+ ++ + + +VND+LD+SK+ESG+ HF+ V L +A+ + + Q Sbjct: 426 DLGAKERQEFLATVNHETDRLTRLVNDVLDLSKLESGR-TYHFDGVDLAQALEQTLRTYQ 484 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---- 732 L A EK I + A+N+P ++ + + Q+ N++ NA+ FTP+GG + I Sbjct: 485 LNAKEKGINLVQELASNLPMVIGNYDLLLQVFGNLIGNALKFTPAGGIVAIRAYRVDVNR 544 Query: 733 ---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 ++ V + + DTG+G+ + E F ++ N EGTGLGL + + +++ + Sbjct: 545 SGHNSPLVRIEISDTGIGIAPEDQEAIFDRFFRVENRVHTL-EGTGLGLSIVRNIMERHH 603 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + ++ S GT L+D P Sbjct: 604 SQMHLVSEVGVGTTFWFDLALFDEDKP 630 >gi|154303265|ref|XP_001552040.1| hypothetical protein BC1G_09381 [Botryotinia fuckeliana B05.10] gi|150854944|gb|EDN30136.1| hypothetical protein BC1G_09381 [Botryotinia fuckeliana B05.10] Length = 2129 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 81/262 (30%), Positives = 130/262 (49%), Gaps = 25/262 (9%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 F +C DI++ K + KL A + K FL+ +SHEIRTPL I G Sbjct: 1392 FGACT-----DINDHKLLETKLKEAME-------SKGKFLSNMSHEIRTPLIGISGMVSF 1439 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 +++ N ++Y N I S + +L+I+ND+LD+SK+++G M L +E V Sbjct: 1440 LQDTTL----NDEQLDYTNTIQSSASSLLNIINDILDLSKVDAGMMKLSYEWFHTRSLVE 1495 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 E +V A KR+ + ++P ++ D ++Q+ LN++ NAI FT G Sbjct: 1496 EVNEMVSTMAITKRLELNYIVDVDVPEMVKGDKFRIRQVLLNVIGNAIKFTTVGEVFTRC 1555 Query: 729 TTHTSNE------EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 +T + E++L + DTG G T E + KPF QI S + G+GLGL + Sbjct: 1556 RVYTDADSPPLVNEIMLEYSIVDTGRGFTKEEADLIFKPFSQIDGSSTRQHGGSGLGLVI 1615 Query: 781 AKAMVDANMGKFYIFSTPAKGT 802 ++ +V + GK + P KG+ Sbjct: 1616 SRQLVQLHNGKMQGTAVPGKGS 1637 >gi|187919994|ref|YP_001889025.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] gi|187718432|gb|ACD19655.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] Length = 776 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 93/380 (24%), Positives = 168/380 (44%), Gaps = 27/380 (7%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +++ + +++ +I E SD I I + G I N ++ GY + +IL KP +FL Sbjct: 272 RKEAQTVLLRQAAIFEHLSDAIVITDLRGNITDFNVGGERMLGYRMREILGKPVALFLPP 331 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR--------IIIKKLPFS--SC 553 E L++ G+ + E R +IK L + Sbjct: 332 E----------ETLNIRREALAALAAEGTWRGELPFVRRDGSRGVCETVIKPLANARGDI 381 Query: 554 YSLTM--HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 Y DI+ + + +L+ K K +FLA ++HE+R PL + E+++ Sbjct: 382 YGAVSINRDITGRRHAEQQLTRLNLELSKADRRKDEFLATLAHELRNPLAPMRNVLEILR 441 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + F +P+ + DR + +V+DLL++S+I GK+ L + + L A+ A Sbjct: 442 LKEFA---DPQLSWSRDVFDRQLQHMTHLVDDLLEVSRITQGKLELRKQRLELARAMQSA 498 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + + + + ++AD + Q+ LN+L+NA +TP GG I ++ Sbjct: 499 MEAARPTVQASSHHLSVTLPREPLYLVADPTRLSQMILNLLNNAAKYTPPGGTISLAAER 558 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 +E VI+ VRD+G+G+ L + F Q+ + G G+GL L + + + + G Sbjct: 559 DGDEAVIV-VRDSGIGIPAEHLNSVFEMFSQLAPALDRSQGGLGIGLALVRGLAELHGGT 617 Query: 792 FYIFS-TPAKGTLIEIIFPL 810 FS P KG+ I P+ Sbjct: 618 VAAFSDGPGKGSEFVIRLPV 637 >gi|302058747|ref|ZP_07250288.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato K40] gi|302131708|ref|ZP_07257698.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 1202 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 127/262 (48%), Gaps = 8/262 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K + +L A ++A + + KS FLA +SHEIRTP+ AIIG E+ Q Sbjct: 681 DITERKLLEQQLEQAVRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLELECEQALRRGE 740 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P + RS ++ ++ + LD+++IE+G M L L ++L A Sbjct: 741 AP--TQGLQVAHRSATELVALIGESLDLARIEAGGMQLSLVVTPLQTFFEGVLALFSAQA 798 Query: 680 NEKRILIRTSFANNI--PRILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSN 734 EK + +R A L LR ++Q+ N+L NA+ FT G ++ +S Sbjct: 799 REKGLELRLELAEQARGDYWLDPLR-LRQVVHNVLGNALKFTRQGAVVVKVEVSDDPPDA 857 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V + + D+GVG+ ++ +PF Q + R G+GLGL + + +V+ G + Sbjct: 858 SRVRIGIMDSGVGIEPARQQQIFQPFTQAADDTAARYGGSGLGLSITRQLVELMKGDISL 917 Query: 795 FSTPAKGTLIEIIFPLYDTSHP 816 S P KGT + + PL + P Sbjct: 918 HSEPGKGTRVTVDVPLARVTEP 939 >gi|262403778|ref|ZP_06080336.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. RC586] gi|262350282|gb|EEY99417.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. RC586] Length = 830 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 138/255 (54%), Gaps = 7/255 (2%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++ + + + A++ AE+ + +++FLA++SHE+RTPL ++G S+++K PL Sbjct: 429 QDVTSIAEAEKQSQVARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT---PL 485 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + E+ + SG +L ++ND+LD S++E GK + L+E V + + Sbjct: 486 TDEQR-EHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKSEFRLNELVYAIDRIYRPL 544 Query: 679 ANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--E 735 N+K + L+ S + + +D + QI N+L+NAI FT G ++ + Sbjct: 545 CNDKGLELVVDSNITSAVLVRSDQVRINQILFNLLNNAIKFTHQGSIRVVLELIEGDPLA 604 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +++++V DTG+G+ +L +PF Q ++ G+GLGL + ++V+ G+ ++ Sbjct: 605 QLVIQVVDTGIGIREQDLTVIFEPFVQAESTTTREYGGSGLGLAIVHSLVEMLSGQLHVS 664 Query: 796 STPAKGTLIEIIFPL 810 S +GT EI P+ Sbjct: 665 SEYGRGTRFEIQLPI 679 >gi|166712853|ref|ZP_02244060.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 1182 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 125/241 (51%), Gaps = 8/241 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S K+ FLA + HE+RTP+T ++G SE++ + Y I R Sbjct: 800 HKQELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTSL----DITQRSYTESIRR 855 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--RILIRTSF 690 +G +L +VND LD+++IESG++ L +P S+ + V+E +L+ A E+ R + Sbjct: 856 AGAHLLRLVNDALDLARIESGRLELDLQPFSVRQLVAEVKALMAPLAQERGLRFSLEIGL 915 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 +I D ++QI LN+L+NAI FT G + TT S + + V DTG G+ Sbjct: 916 LGDI-TASGDSTRIRQILLNLLNNAIKFTERGVVGLKLTTLGSYQGLRFEVADTGPGINA 974 Query: 751 YELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + + F Q ++ R G+GLGL + + + A G + S GT + P Sbjct: 975 EQKARLFQRFEQGDGARTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTRFVVDLP 1034 Query: 810 L 810 L Sbjct: 1035 L 1035 >gi|17228224|ref|NP_484772.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130074|dbj|BAB72686.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1645 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 131/244 (53%), Gaps = 30/244 (12%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHE+RTPL AI+GF++++ + + N + + I+R+G +LD++ND+ Sbjct: 1153 KSEFLANMSHELRTPLNAILGFTQIMSHDKTLSKDNQQNL---TIINRAGEHLLDLINDV 1209 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703 L++SKIE+G+ L+ L + ++Q A K + ++ +A NI + I AD Sbjct: 1210 LEMSKIEAGRTTLNINSFDLIHLLDNLQEMMQGRATAKGLHLKFEYAPNIAQHIQADESK 1269 Query: 704 VKQIALNILSNAIHFTPSGGQIII---------------STTH----------TSNEEVI 738 ++Q+ LNIL NAI FT +G I+ + TH T+ + +I Sbjct: 1270 LRQVLLNILGNAIKFTETGSIILRVKMGTGDWGLGTEEDTKTHLSIPNTQSPITNPQSLI 1329 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 ++DTG+G+ + E+ + FGQ ++ + +GTGLGL +++ V G + S Sbjct: 1330 FEIQDTGIGICDDEVCVLFEAFGQTEAGRKSQ-QGTGLGLAISRKYVQLMGGDISVSSAV 1388 Query: 799 AKGT 802 G+ Sbjct: 1389 GVGS 1392 >gi|150402298|ref|YP_001329592.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C7] gi|150033328|gb|ABR65441.1| integral membrane sensor signal transduction histidine kinase [Methanococcus maripaludis C7] Length = 614 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 136/246 (55%), Gaps = 4/246 (1%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K++ N L H+ ++ KS+ ++ VSHE+RTPLT+I+G+ +++K++ G L N + Sbjct: 371 KKDANDLKHSYDELKEVDDLKSELISIVSHELRTPLTSILGYIQLLKDETAGKL-NEKQK 429 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E+ + I + + I +++ D+ ++ ++ F +++ AV E IS +Q +A+ + I Sbjct: 430 EFVSVISENSERLKRITDNMSDLVSVDDDVLDGEFNKLNIKNAVEEIISSLQHFADSRNI 489 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 ++ ++ I D + Q+ N++ NA+ F+ ++ + T N + L + D Sbjct: 490 ILLEDVDDS--YIKGDKSKIHQVLANLIENAVKFSKKQTKVTV-TGFEDNGNIHLEITDQ 546 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G G+ L+K F QI +S + G+GLGL + K +V+++ G ++ S KGT++ Sbjct: 547 GPGIPKEHLDKIFDRFYQIDSSSKREIGGSGLGLAVCKKIVESHGGSIWVESKIGKGTIV 606 Query: 805 EIIFPL 810 ++FPL Sbjct: 607 HVLFPL 612 >gi|89519332|gb|ABD75809.1| hypothetical protein [uncultured bacterium] Length = 800 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 87/360 (24%), Positives = 169/360 (46%), Gaps = 22/360 (6%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +++ ++SDGI + +++ ++ N +LF L K F+++ ++ + L + Sbjct: 438 ALVNSSSDGIVMTDKQFHLILINAVAERLFQINANQFLEKHLVEFVDEQKDNLKDFDLVK 497 Query: 516 ------ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569 + S + R E L K KL+ ++ +K + L +HDI++ K Sbjct: 498 QVVYQIVTSPEDRVVEEFSLLNPPKTLKLIGNPVLGEKDEVIG-HMLVLHDITQEK---- 552 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 + + D ++ + H+++ PL +IGF+E++ + + + Sbjct: 553 ----------RLEQMRDDLVSMIVHDLKNPLAGVIGFAEIMSVKMKKRDDMEDFENFLTK 602 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I N + ++VN++L++ K+E G M L + +L ++ +I V++ A +K I I T Sbjct: 603 ILYQANTLHEMVNNILEVHKMEDGSMELQKDVSNLQTIITNSIHQVEMSAKQKDISITTD 662 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 + +P + D + ++ NI+SN I +TP G I IS ++E++ + DTG G+ Sbjct: 663 LPDPLPPVFVDHTKIVRLFANIMSNGIKYTPEQGNIHIS-VKVQDDEILTGISDTGKGIP 721 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 LE F QI +Q + GLGL K +V+++ GK + S KG+ FP Sbjct: 722 LEYLETIFDRFAQIDRKKQGKAASVGLGLYFCKLVVESHGGKIWAESELGKGSTFFFTFP 781 >gi|255014410|ref|ZP_05286536.1| putative two-component regulator sensor kinase [Bacteroides sp. 2_1_7] Length = 602 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 84/245 (34%), Positives = 127/245 (51%), Gaps = 8/245 (3%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 EK L+ A + A + KS FLA +SHEIRTPL AIIGFS +I L + Sbjct: 366 HEKESLAEALEKANESDRMKSVFLANMSHEIRTPLNAIIGFSSLIAEL---DLTAEEKEQ 422 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 YAN I + L+L +VND+LD+++IESG + H E +L + V + + L + I Sbjct: 423 YANIITTNNELLLKLVNDILDLARIESGGIVFHKESCNLTDLV-KTLYKQHLSDVPEGIE 481 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + + + +D + Q NIL NAI FT +G I ++V L V+DTG Sbjct: 482 FKEKCPDTPICLYSDKERLYQALENILKNAIKFTSAGFIEIGYEYSAEAQDVRLYVQDTG 541 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G++ + E + F ++ + Q GTGLGL + +A+V G+ + S KG I Sbjct: 542 IGISPEDQEAIFERFKKLDDFVQ----GTGLGLSICQAIVKQLNGRILLKSEKNKGCRIS 597 Query: 806 IIFPL 810 ++F L Sbjct: 598 LVFEL 602 >gi|169333797|ref|ZP_02860990.1| hypothetical protein ANASTE_00182 [Anaerofustis stercorihominis DSM 17244] gi|169259362|gb|EDS73328.1| hypothetical protein ANASTE_00182 [Anaerofustis stercorihominis DSM 17244] Length = 710 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 130/252 (51%), Gaps = 17/252 (6%) Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP-RYIEYANYIDRSG 634 KIA + KS FLA +SHEIRTPL I+G +++ +G+ + +EY D S Sbjct: 325 KIAREAEQAKSSFLANMSHEIRTPLNGIVGLHYLMRKN----IGDKDKMLEYLKKADVSA 380 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 + +++D+L++SKIESG++ ++ + L++ +++ L+ A +KR+ +NNI Sbjct: 381 EYLKSVISDVLNMSKIESGQIEIYKNDMDLNKFINDIDILIGTQAKDKRLHFEID-SNNI 439 Query: 695 P--RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTGVGMT 749 I+ D +KQI +N+L NA+ FTP G I + + ++ + DTG GM+ Sbjct: 440 IGYHIIGDETRLKQIIVNLLGNALKFTPEEGSIFLKIEQAESNNILNTKFTISDTGCGMS 499 Query: 750 NYELEKAMKPFGQIP--NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 LEK PF Q NSQ GTGLG L+K V+ G + S +GT I Sbjct: 500 PEFLEKIWIPFEQERRYNSQN----GTGLGTTLSKIFVEKMGGNIEVQSKVNEGTTFIIN 555 Query: 808 FPLYDTSHPHDC 819 P +S + Sbjct: 556 IPFERSSQKSEV 567 >gi|163813932|ref|ZP_02205326.1| hypothetical protein COPEUT_00085 [Coprococcus eutactus ATCC 27759] gi|158450802|gb|EDP27797.1| hypothetical protein COPEUT_00085 [Coprococcus eutactus ATCC 27759] Length = 726 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 76/252 (30%), Positives = 132/252 (52%), Gaps = 11/252 (4%) Query: 565 KQEKNKLSHAKKIAEKE---SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 ++E++ ++ +K AE + K+ FL +SH+IRTP+ AIIGF++++K+ Sbjct: 321 RKEQSYMAEIEKTAENARLANEAKTRFLFNMSHDIRTPMNAIIGFAQLLKDH---ADDKD 377 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + EY + I SG+++L I+N +L++++IESG+ L+ E +L E ++ + + Sbjct: 378 KVNEYTSKISASGSVLLSIINQVLEMARIESGEAELNEEVGNLRELTESIKAVFEPEISR 437 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----- 736 K++ + D V++I LNI+ N++ +TP GG I + S + Sbjct: 438 KKLSCDYLVKVTEEFVSYDETKVREILLNIIGNSVKYTPDGGNISVRVEQISKGDQGSAS 497 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V DTG+GM+ L + F + S + R EGTGLGLP+ K++VD G + S Sbjct: 498 YRFTVADTGIGMSEEYLPHIFEEFTRERTSTETRVEGTGLGLPIVKSLVDMMGGSIDVQS 557 Query: 797 TPAKGTLIEIIF 808 GT I+ Sbjct: 558 KVGVGTTTTIVL 569 >gi|325288327|ref|YP_004264508.1| multi-sensor signal transduction histidine kinase [Syntrophobotulus glycolicus DSM 8271] gi|324963728|gb|ADY54507.1| multi-sensor signal transduction histidine kinase [Syntrophobotulus glycolicus DSM 8271] Length = 595 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 129/232 (55%), Gaps = 6/232 (2%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLV 637 +K +++F++ VSHE++TPLT+I GF + +K+ G + +P ++ + ID + Sbjct: 368 KKLEQMRTEFVSNVSHELKTPLTSIRGFIDTLKD---GAVNDPEVAGKFLDIIDIEAERL 424 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 ++N++L +S+IES K + + E V L + E S++Q A E+++ + A ++ I Sbjct: 425 SRLINEILQLSEIESMKQDRNIEDVFLKPVIDEVFSILQQSAEERKVGLHADIAESVS-I 483 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 A+ +KQ+ +N++ NAI + G + + + V++ VRDTG+G+ L++ Sbjct: 484 QANKDKIKQLLINLIDNAIKYNIENGSVTVKAEQAGGK-VLISVRDTGIGIEKEYLDRIF 542 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F ++ + GTGLGL + K +V+ G+ + S P KGT +I P Sbjct: 543 ERFYRVDRGRSSELGGTGLGLSIVKHIVNLYQGRIDVDSDPGKGTEFKIEIP 594 >gi|262383486|ref|ZP_06076622.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262294384|gb|EEY82316.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 638 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 86/245 (35%), Positives = 132/245 (53%), Gaps = 10/245 (4%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 EK L+ A + A + KS FLA +SHEIRTPL AIIGFS +I L +Y Sbjct: 403 EKESLAEALEKANESDRMKSVFLANMSHEIRTPLNAIIGFSSLIAEL---DLTAEEKEQY 459 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 AN I + L+L +VND+LD+++IESG + H E +L + V + + L + I Sbjct: 460 ANIITTNNELLLKLVNDILDLARIESGGIVFHKESCNLTDLV-KTLYKQHLSDVPEGIEF 518 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTG 745 + + + +D + Q NIL NAI FT S G I I ++++ ++V L V+DTG Sbjct: 519 KEKCPDTPICLYSDKERLYQALENILKNAIKFT-SAGFIEIGYEYSADAQDVRLYVQDTG 577 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G++ + E + F ++ + Q GTGLGL + +A+V G+ + S KG I Sbjct: 578 IGISPEDQEAIFERFKKLDDFVQ----GTGLGLSICQAIVKQLNGRILLQSEKNKGCRIS 633 Query: 806 IIFPL 810 ++F L Sbjct: 634 LVFEL 638 >gi|196039677|ref|ZP_03106981.1| sensor histidine kinase [Bacillus cereus NVH0597-99] gi|196029380|gb|EDX67983.1| sensor histidine kinase [Bacillus cereus NVH0597-99] Length = 453 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 125/251 (49%), Gaps = 13/251 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E + + L+H EK K++F+A +SHEIRTPLT I G+SE +K L Sbjct: 214 GELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKT--VDHLTEE 271 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + I + ++ +V +LLD S+++S NL+ + V L + + E I + A E Sbjct: 272 EIKQGMGIISGETDRLIQLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEE 331 Query: 682 KRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K++ F I RI + D +KQI LNI+ NAI ++ G++ I T + VI Sbjct: 332 KQM----QFIKTIERIELIGDRNRLKQIFLNIVQNAIKYSYKNGKVYIEATKNEGQAVI- 386 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 +V+D G+G+ L + F QI N G GLGL + K MV+ + G I S Sbjct: 387 KVKDDGIGIAKEHLPYIEQSFYQINN----HAIGAGLGLAIVKKMVELHGGTINIISKEG 442 Query: 800 KGTLIEIIFPL 810 GT I I PL Sbjct: 443 IGTTILIKLPL 453 >gi|262274565|ref|ZP_06052376.1| sensory box histidine kinase/response regulator [Grimontia hollisae CIP 101886] gi|262221128|gb|EEY72442.1| sensory box histidine kinase/response regulator [Grimontia hollisae CIP 101886] Length = 834 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 80/258 (31%), Positives = 133/258 (51%), Gaps = 15/258 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 +S + Q L A++ A K + K FLA +SHEIRTP+ I+G + +++++ P+ + Sbjct: 432 VSAFNQLSASLVDARERAIKAARAKQLFLANISHEIRTPMNGILGAASLMQDE---PM-S 487 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 R EY + I S ++ ++NDLLD SK+ES + L P L++ L+ N Sbjct: 488 ARQAEYLSVIAHSSRGLMALINDLLDFSKMESNHLKLEEAPFDLEKLGKYVHDLMLPTIN 547 Query: 681 EK-RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 K ++ + + PR L D ++Q+ LN++SNA+ FT +G ++S + + +E Sbjct: 548 NKPQLAFEFRYEDTCPRYFLGDAHRIEQVMLNLVSNALKFTETG---VVSFSISMRKEQG 604 Query: 737 ----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 V LRV DTGVG+ + F Q S + G+GLGL + K +VD G Sbjct: 605 GYTGVCLRVSDTGVGIAPEKHNMIFDEFQQADTSTTRQFGGSGLGLAITKQLVDLMGGTI 664 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S +G++ + PL Sbjct: 665 SVESELGRGSVFNVFLPL 682 >gi|256841371|ref|ZP_05546878.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737214|gb|EEU50541.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 638 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 86/245 (35%), Positives = 132/245 (53%), Gaps = 10/245 (4%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 EK L+ A + A + KS FLA +SHEIRTPL AIIGFS +I L +Y Sbjct: 403 EKESLAEALEKANESDRMKSVFLANMSHEIRTPLNAIIGFSSLIAEL---DLTAEEKEQY 459 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 AN I + L+L +VND+LD+++IESG + H E +L + V + + L + I Sbjct: 460 ANIITTNNELLLKLVNDILDLARIESGGIVFHKESCNLTDLV-KTLYKQHLSDVPEGIEF 518 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTG 745 + + + +D + Q NIL NAI FT S G I I ++++ ++V L V+DTG Sbjct: 519 KEKCPDTPICLYSDKERLYQALENILKNAIKFT-SAGFIEIGYEYSADAQDVRLYVQDTG 577 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G++ + E + F ++ + Q GTGLGL + +A+V G+ + S KG I Sbjct: 578 IGISPEDQEAIFERFKKLDDFVQ----GTGLGLSICQAIVKQLNGRILLQSEKNKGCRIS 633 Query: 806 IIFPL 810 ++F L Sbjct: 634 LVFEL 638 >gi|170745073|ref|YP_001766530.1| integral membrane sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170658674|gb|ACB27728.1| integral membrane sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 589 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 122/237 (51%), Gaps = 8/237 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KSDFLA +SHE+RTPL AI+GF +++++ P P + + ++ +VND+ Sbjct: 205 KSDFLATMSHEVRTPLNAIVGFGDLLRDD---PTLTPSQQRCVDQMRVGCEVLTTVVNDI 261 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR-TSFANNIPRILADLRS 703 LD ++IE+ + L P S V E ++LV A K + +R S A ++ D Sbjct: 262 LDYARIEADGVALEAAPFSPRALVEETVALVAGTAERKGLDLRWDSDAGTDQPLIGDKTR 321 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFG 761 ++Q+ LN+++NA+ FT G + T S + V LR VRDTG+G+ + F Sbjct: 322 LRQVLLNLVNNAVKFTQRGSVTVALTQTPSPDGVALRVAVRDTGIGIPVDAQARLFTRFA 381 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT--LIEIIFPLYDTSHP 816 Q +S R GTGLGL +AK +++ G + S G+ +++ P T P Sbjct: 382 QADSSTTRRFGGTGLGLAIAKGLIETMGGTMGLDSRDGAGSTFWFDVVLPRAATDAP 438 >gi|77359607|ref|YP_339182.1| sensory transduction histidine kinase [Pseudoalteromonas haloplanktis TAC125] gi|76874518|emb|CAI85739.1| conserved protein of unknown function ; putative sensory transduction histidine kinase [Pseudoalteromonas haloplanktis TAC125] Length = 893 Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 137/231 (59%), Gaps = 8/231 (3%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSE-VIKNQRFGPLGNPRYIEYANYIDRSGNL 636 AE+ + KS FLA +SHEIRTPLTAI+GF+E ++ N + + N + ++ + I R+ Sbjct: 406 AEQANQLKSRFLANMSHEIRTPLTAIMGFTEQLLHNDK---ITNNK--QHLSTILRNSKH 460 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 +L+++N++LD+SKIE+ K+ + P+++ + + S+++ A +K++ + ++ +P Sbjct: 461 LLELINNILDLSKIEAEKIAVEQAPLNVVRLMHDIESIIEPLAQQKKLKLSINYQLPLPH 520 Query: 697 IL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 + +D +KQI +NI SNA+ FT G + I+ + ++E++ ++D+G+GM ++++ Sbjct: 521 TINSDETRLKQILINIASNAVKFTEQ-GHVSITVHYLPSQELMFVIQDSGIGMVESQIKR 579 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 PF Q + R GTGLGL ++K + G + S G+ I Sbjct: 580 LFTPFEQADATTTRRFGGTGLGLCISKNLAQRLGGDITVKSELDVGSCFTI 630 >gi|303248516|ref|ZP_07334774.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490136|gb|EFL50056.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 676 Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 100/375 (26%), Positives = 182/375 (48%), Gaps = 25/375 (6%) Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 V+ R++ + + + Q+ +I A I I+NR+ ++++ N + + GY + L + Sbjct: 155 VEARLSVEREKSFLEQVITIAGAA---ICIVNRDDVVVTINDEFTAITGYSRDQALGRER 211 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 L ++ PS + +++ +I T++ + L+ I+ P Sbjct: 212 AGLLRESPPSPCPAKPARPGNGAVQKRQSQIL---TRDGQRLT--ILKNAAPILDATGTP 266 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 I + + + L A+ AE+ S KS FLA +SHEIRTPL AI+G +++++ Sbjct: 267 TGGIESFV-DVSSLIRARVEAEEASRMKSAFLANMSHEIRTPLNAILGLTQILRKTAL-- 323 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + + + +G +L I+ DLLD S++E G++ + P+ ++ + E +++ Sbjct: 324 --TDEQRDCVDTMRSAGEGLLVILGDLLDFSRMEVGRLEIRPAPMDIERLLEETRRVMEP 381 Query: 678 YANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST------T 730 A E+ + + ++PR+L D +KQI LN+LSNAI FTP G + ++ Sbjct: 382 LAAERGLTLCLERDPDLPRVLVCDPMRLKQILLNLLSNAIKFTPQGRVTLYASRAREPMA 441 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE--GTGLGLPLAKAMVDAN 788 + V VRDTG G+ E+ +PF Q + + I G GTGLGL ++ +V Sbjct: 442 YEGPVAVQFAVRDTGPGIPEGMRERIFEPFVQ--SDETIAGNHGGTGLGLSISDRLVRLL 499 Query: 789 MGK-FYIFSTPAKGT 802 G + S P KG+ Sbjct: 500 GGTGLSVTSQPGKGS 514 >gi|229918207|ref|YP_002886853.1| histidine kinase [Exiguobacterium sp. AT1b] gi|229469636|gb|ACQ71408.1| histidine kinase [Exiguobacterium sp. AT1b] Length = 852 Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 131/239 (54%), Gaps = 27/239 (11%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+F++ +SHE+RTPL++I GF+E++ ++ L N + +Y I + +VND Sbjct: 619 KSEFISTISHELRTPLSSIYGFTELMVKKQ---LPNEKQAKYLETIHSETERLTHLVNDF 675 Query: 645 LDISKIESG-----KMNLHFEPVSLDE-AVSEAISL---VQLYANEKRILIRTSFANNIP 695 LD+ ++ESG + L EPV D EA SL +L A++ R P Sbjct: 676 LDVQRMESGSQMYDREQLDIEPVVRDMLTFYEASSLKHEFELIADDAR-----------P 724 Query: 696 -RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYEL 753 + D + KQ+ N+LSNA+ ++P GG+I + H +E+++ ++V+D G+G+ + L Sbjct: 725 YELFVDCQKFKQLMSNLLSNAVKYSPRGGKITVELAH--HEQIVSIKVKDEGIGIPSDAL 782 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 ++ F ++ NS GTGLGLP+ + +V + G+ ++ S +G+ + P Y+ Sbjct: 783 DRLFDKFYRVDNSDSREIGGTGLGLPICQEIVRGHNGQIHVESIQHEGSTFIVEIPSYE 841 >gi|326318964|ref|YP_004236636.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375800|gb|ADX48069.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 957 Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 133/249 (53%), Gaps = 18/249 (7%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E + + L+ ++AE+ K+ FLA +SHEIRTPL AI+G +++ + PL Sbjct: 401 DVTEQRNQARALA---QVAEE----KATFLAVMSHEIRTPLNAILGLAQLALKE---PL- 449 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P E + R+G +L IV+D LD SKI+ G + L + +++ L + A Sbjct: 450 PPAQQERVEQLYRAGRRLLGIVDDTLDFSKIDGGHLVLEHAEFDARQLLADLSELFEPRA 509 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--- 735 +K + +R + P ++ D + QI +N ++NAI FT +G ++ ++ + E Sbjct: 510 RDKGLALRVGLPDAFPAHLVGDAHRIAQILMNFVNNAIKFTETG-EVAVTLEAAAQEPDG 568 Query: 736 EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 V+LR VRDTG+G+T + E +PF Q + R GTGLGL +++ + G Sbjct: 569 TVVLRGTVRDTGIGLTPLQREHLFQPFHQADATITRRFGGTGLGLAISRRLARHMGGDTG 628 Query: 794 IFSTPAKGT 802 + STP G+ Sbjct: 629 VDSTPGLGS 637 >gi|229522299|ref|ZP_04411715.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae TM 11079-80] gi|229340284|gb|EEO05290.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae TM 11079-80] Length = 857 Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 88/319 (27%), Positives = 155/319 (48%), Gaps = 17/319 (5%) Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS------SCYSLTMH--DI 561 NH+L EIL L T+ K G+ + + + + S S+ DI Sbjct: 397 NHFLFEILERQLLPTITKAAQGNNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDI 456 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 + + + + A++ AE+ + +++FLA++SHE+RTPL ++G S+++K PL N Sbjct: 457 TTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT---PL-ND 512 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 E+ + SG +L ++ND+LD S++E GK + L E V + + NE Sbjct: 513 EQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNE 572 Query: 682 KRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EV 737 K + L+ S + +D + QI N+L+NAI FT G I + + ++ Sbjct: 573 KGLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGDPLAQL 631 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 +++V DTG+G+ +L +PF Q ++ G+GLGL + ++V+ G+ ++ S Sbjct: 632 VIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSE 691 Query: 798 PAKGTLIEIIFPLYDTSHP 816 GT EI P+ P Sbjct: 692 YGIGTRFEIQLPIELVERP 710 >gi|90020314|ref|YP_526141.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89949914|gb|ABD79929.1| GGDEF domain [Saccharophagus degradans 2-40] Length = 1526 Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 83/288 (28%), Positives = 138/288 (47%), Gaps = 20/288 (6%) Query: 540 SLRIIIKKLPFSSCYSLTMHDIS-----EW--KQEKNKLSHAKKIAEKESS--------- 583 S+ I+I + + ++ T++ I W Q++ K+S ++ E+E S Sbjct: 810 SINIVILPPYWKTWWAYTLYIILFIVLLTWFIHQQRQKVSFERQKVEQERSVVRRLKQLD 869 Query: 584 -HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 K +FLA SHE+RTPL I+G +E + + GPL + A I SG + +V+ Sbjct: 870 KLKDEFLANTSHELRTPLNGIVGLAESLMDGVTGPLSHKTKQNLA-MIVSSGKRLAGLVD 928 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702 DLLD ++++ M L+ + V + V +SL K I + + + +P++ AD Sbjct: 929 DLLDFAQLKHRGMALNKKAVDIHVLVDVVLSLTLPIIGAKPIELVNNVSKQLPKVAADES 988 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 + QI N++ NA+ FT G I + EE+ + V DTG+G+ E+ F Q Sbjct: 989 RLLQILHNLVGNAVKFTDEGSVTI--SAEVQGEEICISVADTGIGVPENRFEEIFDSFRQ 1046 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + GTGLGL + K +V+ + G + ST KG PL Sbjct: 1047 LEGASNRVYGGTGLGLSVTKQLVELHGGTIGVRSTLGKGATFYFYLPL 1094 >gi|186681682|ref|YP_001864878.1| integral membrane sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186464134|gb|ACC79935.1| integral membrane sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 909 Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 143/254 (56%), Gaps = 15/254 (5%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L K++A+ + KS+FLA +SHE+RTPL I+G+++++ QR L + + + I Sbjct: 258 LELKKELADTANRAKSEFLANMSHELRTPLNGILGYAQIL--QRDKTLTDKQQ-DGLRII 314 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + G+ +L ++ND+LD+SKIE+ +M L+ + + + ++ A++K I Sbjct: 315 HQCGSHLLTLINDILDLSKIEAQRMELYKSDFHFPAFLQSVVEICRIRADQKGISFIYQP 374 Query: 691 ANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIIST-----THTSNEEVILRVR- 742 + +P + AD + ++Q+ +N+L NAI FT GG + IS+ T+ SN++ I ++R Sbjct: 375 TSELPIGVWADEKRLRQVLINLLGNAIKFTEKGGVRFTISSVDQLLTNESNQKPIHKIRF 434 Query: 743 ---DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 DTG+GM+ ++ K PF Q+ ++ + EGTGLGL +++ +V + S Sbjct: 435 QIIDTGIGMSQEQVAKIFLPFEQVGEVKK-QSEGTGLGLAISQRIVQLMDSTIQVKSEIG 493 Query: 800 KGTLIEIIFPLYDT 813 +G+ I L ++ Sbjct: 494 QGSTFWIDLDLQES 507 >gi|301384041|ref|ZP_07232459.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato Max13] Length = 1195 Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 127/262 (48%), Gaps = 8/262 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K + +L A ++A + + KS FLA +SHEIRTP+ AIIG E+ Q Sbjct: 674 DITERKLLEQQLEQAVRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLELECEQALRRGE 733 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P + RS ++ ++ + LD+++IE+G M L L ++L A Sbjct: 734 AP--TQGLQVAHRSATELVALIGESLDLARIEAGGMQLSLVVTPLQTFFEGVLALFSAQA 791 Query: 680 NEKRILIRTSFANNI--PRILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSN 734 EK + +R A L LR ++Q+ N+L NA+ FT G ++ +S Sbjct: 792 REKGLELRLELAEQARGDYWLDPLR-LRQVVHNVLGNALKFTRQGAVVVKVEVSDDPPDA 850 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V + + D+GVG+ ++ +PF Q + R G+GLGL + + +V+ G + Sbjct: 851 SRVRIGIMDSGVGIEPARQQQIFQPFTQAADDTAARYGGSGLGLSITRQLVELMKGDISL 910 Query: 795 FSTPAKGTLIEIIFPLYDTSHP 816 S P KGT + + PL + P Sbjct: 911 HSEPGKGTRVTVDVPLARVTEP 932 >gi|294010920|ref|YP_003544380.1| signal transduction histidine kinase [Sphingobium japonicum UT26S] gi|292674250|dbj|BAI95768.1| signal transduction histidine kinase [Sphingobium japonicum UT26S] Length = 1048 Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 72/255 (28%), Positives = 139/255 (54%), Gaps = 15/255 (5%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 S+ + +I + +L AK+ A+ + KS F+ +SHEIRTPL I G+++++ Sbjct: 649 SMLVDEIEAHARTDAELQRAKEAADAANLAKSRFIVGISHEIRTPLNTISGYAQLLDK-- 706 Query: 615 FGPLGNPRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 +P ++ A I RS + D+++ L+D+S+IE+G + + PV+L + + + Sbjct: 707 -----DPAHLADAVRVIRRSATHLTDLIDGLVDVSRIENGSVRIQRAPVNLHDLLHQLGD 761 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + +L A + I S A ++P+ + +D + ++QI +N++SNAI +TP G + H Sbjct: 762 MFRLQAAARGIQFSHSRAPHLPQWVYSDEKRLRQILINLISNAIKYTPQGSASL--AVHW 819 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGK 791 N ++D+GVG+ +L++ +PF +I + G+ G GLGL + + + D G+ Sbjct: 820 RNPVAEFEIKDSGVGIAADDLKRIFEPFERI---NAVPGQPGVGLGLTITRLLADIMGGQ 876 Query: 792 FYIFSTPAKGTLIEI 806 + S P G++ + Sbjct: 877 VTVESRPGAGSVFRV 891 >gi|239627024|ref|ZP_04670055.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517170|gb|EEQ57036.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 843 Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 74/262 (28%), Positives = 137/262 (52%), Gaps = 12/262 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++++N L A ++A ++ K++FL+ +SH+IRTP+ AI+G + + + L +P I Sbjct: 310 ERQRNALEEAYQVARVANAAKTNFLSSMSHDIRTPMNAIMGMTTIAQ----ANLESPEKI 365 Query: 625 -EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + I S +L ++N++LD+SKIESGK++L ++L + + E + + + NEK Sbjct: 366 RDCLEKIKTSSRHLLSLINEVLDMSKIESGKVSLALAQMNLPDMIQEVMDMCRPLVNEKH 425 Query: 684 ILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-----EEV 737 L R S ++AD ++Q+ +N+LSNAI +T GG I + S+ + Sbjct: 426 QLFRISIGRVRHENVIADGDRLRQVLMNLLSNAIKYTQEGGTITLRINERSSLTPDKRQY 485 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 D G+G++ L F + +S+ + +GTGLG+ + + +V G + S Sbjct: 486 EFICTDNGIGISKDYLPHIFDAFTRAEDSRVSKIQGTGLGMAITENIVRMMNGIIDVKSE 545 Query: 798 PAKGTLIEIIFPLYDTSHPHDC 819 G+ + + PL + H D Sbjct: 546 EGAGSTVTVSVPL-EVCHEEDA 566 >gi|254283696|ref|ZP_04958664.1| integral membrane sensor hybrid histidine kinase [gamma proteobacterium NOR51-B] gi|219679899|gb|EED36248.1| integral membrane sensor hybrid histidine kinase [gamma proteobacterium NOR51-B] Length = 512 Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 123/234 (52%), Gaps = 18/234 (7%) Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY------IDRSGNLVLD 639 S FLA VSHE+RTPL AIIG+SE+++++ L + + ++ + I SG +L Sbjct: 279 SMFLANVSHELRTPLNAIIGYSEMLQDE----LSDGQQLDQDQFHHDLGTIIFSGRQLLS 334 Query: 640 IVNDLLDISKIESGKMNLHFE---PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 ++ND+LD+SK+E+GKM + E P +L + +A+S + N L S A+++P Sbjct: 335 LINDILDLSKMETGKMTVSLETVDPAALIYQICDALSPLITQKNNTLTL---SIADDLPE 391 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 + +D ++QI N+ SNA FT G +I +++ V+D G+G+ + Sbjct: 392 MESDPAKLQQIVTNLFSNACKFTEDG--VIEVIARIEKNSLLIAVKDNGIGIAEAQQANV 449 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F Q +S + GTGLGL + + G + STP KG+ PL Sbjct: 450 FEAFEQAESSTGSKYGGTGLGLAIVREFCRMLGGDITLESTPGKGSTFTATLPL 503 >gi|251778827|ref|ZP_04821747.1| two-component sensor histidine kinase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083142|gb|EES49032.1| two-component sensor histidine kinase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 587 Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 127/230 (55%), Gaps = 8/230 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVI-KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 K+ FLA +SHE +TPL I+ ++I KN I+Y + I R+ +L ++N+ Sbjct: 329 KNKFLANISHEFKTPLNVILATVQLIDKNSNDLKTDEIDLIKYIDGIKRNSYRLLRLINN 388 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE--KRILIRTSFANNIPRILADL 701 L+DI+KI+SG NL + ++ E + + + V+ Y E + I+ TS I + D Sbjct: 389 LIDITKIDSGHYNLQLQNYNVVEIIEDIVMAVREYIKENTRDIIFDTSEEEIITAL--DE 446 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPF 760 ++ I LN+LSNAI +T G I +S ++ + + +++ ++D G+G+ + E+ + F Sbjct: 447 NKIETIILNLLSNAIKYTNDDGIIEVSIKYSKDRKNILISIKDNGIGIDSKEINNIFQRF 506 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 N R EGTG+GL L K++V+ + GK + P KGT E +F + Sbjct: 507 KYSNNILNRRCEGTGIGLSLVKSLVEMHGGKIIAKNNPIKGT--EFVFSI 554 >gi|264678130|ref|YP_003278037.1| multi-sensor signal transduction histidine kinase [Comamonas testosteroni CNB-2] gi|262208643|gb|ACY32741.1| multi-sensor signal transduction histidine kinase [Comamonas testosteroni CNB-2] Length = 841 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 128/250 (51%), Gaps = 4/250 (1%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E++ + A+ AE+ KS+F+A +SHE+RTPL +IIGFSE+ + Sbjct: 583 DVTEFRIAELATREARDAAEEAFRVKSEFVANMSHELRTPLQSIIGFSEL---GQLRSRA 639 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P+ E I +G +L +VNDLLD++K+ES ++H E V L + ++ Sbjct: 640 TPKLGEMFYDIHAAGQRMLALVNDLLDVAKLESPVGSIHTEKVDLRGLIRPVARELEPLL 699 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 ++K+I +R + AD +Q+ N+L+NAI F+ G+I + + + Sbjct: 700 HQKQIDLRLRLEDAPLIAKADPVRFQQVIRNMLANAIKFSLPHGRIDVEGHFDGQGNICV 759 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 D G G+ EL+K +PF Q ++ G GTGLGL + + ++DA G + P Sbjct: 760 DFLDQGPGVPTQELDKIFQPFVQSSKTKDGSG-GTGLGLAICRKIIDAMDGTITAANRPD 818 Query: 800 KGTLIEIIFP 809 G + I P Sbjct: 819 GGAVFRITLP 828 >gi|257094177|ref|YP_003167818.1| multi-sensor signal transduction histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046701|gb|ACV35889.1| multi-sensor signal transduction histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 789 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 134/241 (55%), Gaps = 12/241 (4%) Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 ++FL+R+SHE+RTPL AI+GF +++ L + + I R+G +L VN++L Sbjct: 543 TEFLSRMSHELRTPLNAILGFGQLLAMPGDAAL-SAEQADNVQEILRAGRHLLGQVNEVL 601 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705 D++++ESG++ L E V L V++ ++LV+ A + I I ++ P + AD + ++ Sbjct: 602 DLARVESGRIELKLEAVPLAPIVADCVALVRPLAEARGISIDADI-DDAP-LRADAKRLQ 659 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 Q+ LN+LSNAI F G I I+ T + L V D+G G+ + L++ +PF ++ + Sbjct: 660 QVLLNLLSNAIKFNREQGTIRIAGTRHGG-RLRLAVSDSGRGIDSEHLQRLFQPFERLAS 718 Query: 766 SQQIRG-EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH-----PHDC 819 + G EGTG+GL L + +V+A G + S G+ + PL + + P D Sbjct: 719 AYD--GIEGTGVGLALTQRLVEAMGGIIQVASQLDVGSTFSLDLPLANPAQDAAALPADA 776 Query: 820 I 820 + Sbjct: 777 V 777 >gi|225389641|ref|ZP_03759365.1| hypothetical protein CLOSTASPAR_03389 [Clostridium asparagiforme DSM 15981] gi|225044297|gb|EEG54543.1| hypothetical protein CLOSTASPAR_03389 [Clostridium asparagiforme DSM 15981] Length = 1430 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 127/249 (51%), Gaps = 13/249 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN-PRY 623 ++ K +L +A AE+ + KSDFL+ +SH+IRTP+ AI+G + + LG+ R Sbjct: 1042 RRTKRELENALSRAEEANRAKSDFLSTMSHDIRTPMNAIMGMTALA----MAHLGDQERV 1097 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + I S +L ++ND+LD+SKIES ++ L+ +S+ E + + +++ A Sbjct: 1098 TDCLQKISISSRHLLSLINDILDMSKIESSQITLNRMRISIREMLGQLSAIMSSQARSAG 1157 Query: 684 ILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQII-----ISTTHTSNEEV 737 + + P D + QI +NILSNA+ +TP GG + I Sbjct: 1158 LTFSIQAGEIVHPCFYGDALRINQILINILSNAVKYTPEGGCVDFQAEEIPPVGRDCARY 1217 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V DTGVGMT L +PF + + Q R EGTGLGL + K +V+ G + S Sbjct: 1218 RFTVSDTGVGMTEEFLNHVFEPFTR--SRQTTRVEGTGLGLSITKGLVNLMGGAISVESV 1275 Query: 798 PAKGTLIEI 806 +GT+ ++ Sbjct: 1276 VHQGTVFQV 1284 >gi|39354|emb|CAA41252.1| bvgS product, put. sensor protein [Bordetella bronchiseptica] Length = 1238 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 107/379 (28%), Positives = 185/379 (48%), Gaps = 36/379 (9%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 ++E M++ +++ T + I + ++EG +L N A FG + +L K P+ Sbjct: 580 QLEFMRV--LIDGTPNPIYVRDKEGRMLLCNDAYLDTFGVTADAVLGKTIPEANVVGDPA 637 Query: 508 V---MNHYLTEILSLDLRQTLEK--ITL-GSTKE---------EKLLSLRIIIKKLPFSS 552 + M+ +L ++ + E +TL G T+ + L L+ II Sbjct: 638 LAREMHEFLLTRMAAEREPRFEDRDVTLHGRTRHVYQWTVPYGDSLGELKGIIGG----- 692 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 DI+E + +L AK+ A+ + K+ FLA +SHEIRTP+ AIIG E+ Sbjct: 693 -----WIDITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALL 747 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + + + I+ A RS +L+++ D+LDI+KIE+GK +L +L AI Sbjct: 748 RPADQEPDRQSIQVAYDSARS---LLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAI 804 Query: 673 SLVQLYANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + A +K I L+ + + +L D +KQ+ N++ NAI FT + GQ++++ T Sbjct: 805 RVFDGLARQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFT-TEGQVVLTVTA 863 Query: 732 TSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDA 787 + E V V DTG G++ + + KPF Q+ S + GTGLGL +++ +V+ Sbjct: 864 RPDGEAAHVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVEL 923 Query: 788 NMGKFYIFSTPAKGTLIEI 806 G + S P GT + + Sbjct: 924 MGGTLVMRSAPGVGTTVSV 942 >gi|282899667|ref|ZP_06307631.1| Multi-component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281195546|gb|EFA70479.1| Multi-component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] Length = 1317 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 102/371 (27%), Positives = 180/371 (48%), Gaps = 29/371 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +IL D I I+ I N+ K+FGY ++L + + L +++ + Sbjct: 688 AILSIADDAIISIDSNQQITLFNQGAEKIFGYSAGEVLGQKLDLLLPTRFAQEHRNHVYK 747 Query: 516 I--LSLDLRQTLEKITL-GSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNK 570 S R+ E+ + G K+ I KL S Y++ + DI+E KQ Sbjct: 748 FGKSSAHARRMGERQEIFGCRKDGSEFPAEASISKLDLGQESVYTVILRDITERKQ---- 803 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG--NPRYIEYAN 628 EK K +F++ VSHE+RTPLT+I G ++ + R ++ A Sbjct: 804 -------VEK---MKDEFVSVVSHELRTPLTSIHGSLGMLTSGLLSSTSEQGKRLLQIAT 853 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 D + LV ++ND+LDI +IESGK+ + E L + ++ AI+++Q A++ + + Sbjct: 854 --DSTERLV-RLINDILDIERIESGKVKMERENCDLRDLINSAINIMQPLADKAGVSLSI 910 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 +N+ ++ AD + Q N+ SNAI F+ G + + T ++V++ V+DTG G Sbjct: 911 HNSNSSSIQLWADPDRIIQTLTNLFSNAIKFSEPGSTVYL-MTELQKDQVLVTVQDTGRG 969 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +LE + F Q+ +S +GTGLGL + K++V + GK ++ S +G+ Sbjct: 970 IPEDKLESIFERFQQVDSSDSRNHDGTGLGLAICKSIVQQHGGKIWVKSILGEGSSFYFT 1029 Query: 808 FPL---YDTSH 815 P+ YD ++ Sbjct: 1030 LPILTVYDRAN 1040 >gi|170767436|ref|ZP_02901889.1| sensory box histidine kinase AtoS [Escherichia albertii TW07627] gi|170123770|gb|EDS92701.1| sensory box histidine kinase AtoS [Escherichia albertii TW07627] Length = 608 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 186/398 (46%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 229 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 288 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY ++ +P+++ + NT + + +L L E + L + + Sbjct: 289 PAAEVITGYQRHKLVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 341 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 342 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 396 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q + + EY + + + + + ++ LLD S+ Sbjct: 397 AHEVRNPLTAIRGYVQILRQQTRDLM----HQEYLSVVLKEIDSINKVIQQLLDFSRPRH 452 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 453 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL 508 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 509 INAVQAISARGKIRIRTWQYSDSQQAISIEDNGCGIDLTLQKKIFDPFF------TTKAS 562 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 563 GTGLGLALSQRIINAHQGDIRVASLPGHGATFSLILPI 600 >gi|158334723|ref|YP_001515895.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158304964|gb|ABW26581.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] Length = 883 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 78/255 (30%), Positives = 134/255 (52%), Gaps = 18/255 (7%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 ++ ++ AE + KS FLA +SHE+RTPL AI+GFS+++ L + + N Sbjct: 370 QVRESRDKAEAANKAKSAFLANMSHELRTPLNAILGFSQLLARDENLTLEQKQTL---NT 426 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RSG+ +L ++ND+LD+SKIE+GK+ L+ + L + + L A K +++ Sbjct: 427 INRSGSHLLSLINDVLDMSKIEAGKIALNPKNCDLLPLLDSLQEMFALKAKSKGLVLNIQ 486 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH------TSNEEVI---- 738 ++ +P I D ++Q+ +N+L+NA+ FT G + T + N+E + Sbjct: 487 KSSQLPSHIRVDESRLRQVLINLLTNALKFTDVGSVTLRVFTQPLPAPFSLNQETLQPSL 546 Query: 739 ---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V DTG+G+ N EL+ + F Q + ++ EGTGLGL + + G I Sbjct: 547 SLCFDVEDTGIGIANNELDHIFEAFIQTSSGRR-SHEGTGLGLAICHHFIHLMEGDIQIQ 605 Query: 796 STPAKGTLIEIIFPL 810 S +GT + + P+ Sbjct: 606 SQLGQGTTVSVQIPV 620 >gi|156744256|ref|YP_001434385.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156235584|gb|ABU60367.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 556 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 95/363 (26%), Positives = 175/363 (48%), Gaps = 15/363 (4%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E L +++E ++DG+ I++ I + NRA+ L G+ E+ + +P L +TP Sbjct: 164 EKQHLDALIENSADGVMILDERWRIATFNRAMELLTGWSREEAIGRPCAEVLAIHTPQGA 223 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569 N LT+ L RQ E + E ++ R ++L S Y+ S Sbjct: 224 NLCLTDC-PLQ-RQPFEPNPVA----EGWITTRDG-RRLYIQSRYAAQR---SPQGAFLG 273 Query: 570 KLSHAKKIAEK--ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 +++ + + E+ E+ ++ F++ +SHE+RTP++ I G++E + Q A Sbjct: 274 AIANVRDVTEQKIEAEMQNTFISVISHELRTPVSIIKGYAETLARQDAAWDAATLREGLA 333 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I+ + L I N LL+ S++++ M L S+ V + A + R + Sbjct: 334 VIIEEADRLAQQI-NTLLEASRLQTDSMRLELSDWSVRPLVERVVERFAPQAGD-RFTFQ 391 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 ++ P + AD + + N++SNAI ++P+GG I I T S + I+ V D G+G Sbjct: 392 IDIPDDFPPVHADYERTRTVVENLISNAIKYSPNGGLIRI-TARVSGDFAIISVSDQGIG 450 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + E +K + F ++ N + +G GLGL L++ +V+A G+ ++ S P +G+ Sbjct: 451 IPLEEQKKLFRRFYRVDNRLRRETQGAGLGLFLSRVIVEAQGGRIWVDSRPGRGSRFSFT 510 Query: 808 FPL 810 PL Sbjct: 511 VPL 513 >gi|300866840|ref|ZP_07111517.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300335150|emb|CBN56677.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 1017 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 79/255 (30%), Positives = 133/255 (52%), Gaps = 27/255 (10%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + L A + A + KS FLA++SHE+RTP+ AI+GF++++ + P P + E+ Sbjct: 532 QAALEQAAERAAIANRAKSQFLAKMSHELRTPMNAILGFTQIMSRSQNIP---PEFQEHL 588 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRI 684 I RSG +L ++ND+L++SKIE+G++ L F+ V ++ E + L A+EK + Sbjct: 589 GIISRSGEHLLTLINDVLEMSKIEAGQLVLTESCFDIVRFIHSIQEMFA---LKASEKGL 645 Query: 685 LIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQI--------IISTTHTSNE 735 ++R N+ P + D ++QI +N+LSNAI FT +G I +S Sbjct: 646 MLRIEQEINVPPYVYGDQAKLRQILINLLSNAIKFTINGSITLRIKVIPEIDDAIDSSKV 705 Query: 736 EVI-------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 E + L V DTG G+ +LE + F Q + +GTGLGL +++ Sbjct: 706 EALGSAIALYLEVEDTGCGIALCDLESVFEAFMQTERGRH--AQGTGLGLSISRQFARLM 763 Query: 789 MGKFYIFSTPAKGTL 803 G + S+ +G++ Sbjct: 764 GGDITVQSSLNQGSI 778 >gi|150388839|ref|YP_001318888.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149948701|gb|ABR47229.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 583 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 125/229 (54%), Gaps = 6/229 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYAN---YIDRSGNLVLDI 640 ++DF + +SHE+RTPL I+G S ++ +Y EY+ + ++ +L + Sbjct: 323 RTDFFSNISHELRTPLNVILG-SLQLQGLYIASENTSKYKKEYSKANKRMKQNSYRLLRL 381 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700 VN+++DI+KI+SG +++ E ++ + E + V+ Y + I N I D Sbjct: 382 VNNIIDITKIDSGFYDINLENYDINMLIREIVLSVEDYIENAGLQIEFKANTNQAIIACD 441 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 +++I LN+LSNAI FT +GG+I+++ N + + VRDTG+G+ ++ + F Sbjct: 442 PEKIERIMLNLLSNAIKFTEAGGKIVVTVKMVQN-RIFMSVRDTGIGIPQEKINSVFERF 500 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q+ + + EG+G+GL L + +++A+ GK + S +GT I P Sbjct: 501 KQVGSYSHRKNEGSGIGLSLVRLLIEAHKGKVTVRSKLNEGTEFIIELP 549 >gi|153812169|ref|ZP_01964837.1| hypothetical protein RUMOBE_02566 [Ruminococcus obeum ATCC 29174] gi|149831824|gb|EDM86910.1| hypothetical protein RUMOBE_02566 [Ruminococcus obeum ATCC 29174] Length = 942 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 122/240 (50%), Gaps = 12/240 (5%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPLGNPRYIEYANYIDRSGNL 636 A+ + K+ FL+ +SH++RTP+ AIIGF+ + +KN + N ID S Sbjct: 560 AQAANKAKTAFLSHMSHDMRTPMNAIIGFTGIAMKNNPSDEVKNC-----LEKIDESSEH 614 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIP 695 +L ++ND+LD+++IESGK+N + P + A+ + + + + I + IP Sbjct: 615 LLSLINDVLDLTRIESGKVNYNPVPADVKNITDSALDITKGFLMNRDINFKIQREEAKIP 674 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIIST--THTSNEEVI---LRVRDTGVGMTN 750 +LAD ++ + +NILSNA+ FTP GG I + I R+ DTG+GM+ Sbjct: 675 NVLADPARLRDVLVNILSNAVKFTPDGGTITFEARCQEKGGDGYINMRYRISDTGIGMSE 734 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 ++ + F Q + + + G GLG+ + K VD G + S +GT + PL Sbjct: 735 EFTKEVFEEFAQEDSGVRTQYHGVGLGMAIVKKYVDMMGGTISVHSKKHEGTTFTVDIPL 794 >gi|153807923|ref|ZP_01960591.1| hypothetical protein BACCAC_02209 [Bacteroides caccae ATCC 43185] gi|149129532|gb|EDM20746.1| hypothetical protein BACCAC_02209 [Bacteroides caccae ATCC 43185] Length = 991 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 78/251 (31%), Positives = 131/251 (52%), Gaps = 14/251 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E K+ + +L +AK AE+ + KS FLA +SHEIRTPL AI+GFS ++ + Sbjct: 607 ITERKKMEQELINAKNRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEEKQ 666 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 EY + I+ + L+L +++D+LD+SKIE+G ++LH+ V +++ + E + QL Sbjct: 667 ----EYVSIIENNNTLLLQLISDILDLSKIEAGTLDLHYSNVEINDLMRELENSCQLKLK 722 Query: 681 EKRILIRTSFANNIPRILADLRS--VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 ++ F A++ + Q+ +N ++NAI FT G I N E+ Sbjct: 723 SDN--VKLEFVAPEEPCFANIEKNRLSQLIINFVTNAIKFTSQGS--IRFGYERQNNELY 778 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG G+ +L+ F ++ + Q GTGLGL + + +++ GK + S Sbjct: 779 FYVTDTGCGIPQDKLDSIFGRFVKLNSFAQ----GTGLGLSICRTLINHMGGKIGVESEE 834 Query: 799 AKGTLIEIIFP 809 KG+ P Sbjct: 835 GKGSTFWFTLP 845 >gi|86146268|ref|ZP_01064593.1| hypothetical protein MED222_16191 [Vibrio sp. MED222] gi|85835979|gb|EAQ54112.1| hypothetical protein MED222_16191 [Vibrio sp. MED222] Length = 565 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 84/277 (30%), Positives = 133/277 (48%), Gaps = 27/277 (9%) Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 C +LT H ++ N+ ++K AE+ DF+A ++HE+RTPL ++G +E+I + Sbjct: 179 CSALT-HQLA-----INRNIESRKRAEESERATRDFVAMINHELRTPLNGLLGSAELISD 232 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + R E N + +SG + I+NDLLD SKI +G + L + +L + + Sbjct: 233 TELS--SSQR--EIVNNLSQSGEFLRTIINDLLDYSKINAGMLELIPKTFALQDLKNTID 288 Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 S+ A EK+I + + +P DL + Q+ +N++ NAI FT G H Sbjct: 289 SIFTNRAIEKQIQFDVNVTDGVPSHFYGDLERITQLFVNLIGNAIKFTDQG--------H 340 Query: 732 TS------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 S N++ I V D+GVG+ ++ +PF Q NS EGTGLGL + + + Sbjct: 341 VSVEIKWLNDQFIFSVEDSGVGIAQSAIKTLFEPFTQADNSSSRNYEGTGLGLAICRKLA 400 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL--YDTSHPHDCI 820 G + S GT I PL DT D + Sbjct: 401 ALMRGDIEVSSIVGSGTTFTISLPLQVVDTLAERDSV 437 >gi|117926350|ref|YP_866967.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610106|gb|ABK45561.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1166 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 83/275 (30%), Positives = 138/275 (50%), Gaps = 28/275 (10%) Query: 557 TMHDISEWKQEKNKLSHAK--------------KIAEKESSHKSDFLARVSHEIRTPLTA 602 T+ D++E K + +L K + AE+ + KSDFLA +SHEIRTPL A Sbjct: 394 TVLDVTEQKLREQELDEGKLKLRTALEEREKALQCAEQANLAKSDFLANMSHEIRTPLNA 453 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDR---SGNLVLDIVNDLLDISKIESGKMNLHF 659 II S +I L P + +NY+++ +G +L ++ND+LD SKIE+G + L Sbjct: 454 IINLSYLI-------LQTPLTSKQSNYLEKIESAGRTLLGVINDILDYSKIEAGHLVLDH 506 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHF 718 LD+ +S ++ +K + + + P +++ D + + +N+ +NAI F Sbjct: 507 VAFQLDDVISNVANIAIARKEDKDLDLLYHVTPSTPTQMMGDPMRLGAVLINLTNNAIKF 566 Query: 719 TPSGGQIIISTTHTSNEEVIL---RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 T G +I E+ L V+DTG+G++ + ++ + F Q +S R GTG Sbjct: 567 TEHGEVVIRVDAKQQREQHYLLHFSVQDTGIGISAEQQKRLFQSFSQADSSISRRYGGTG 626 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 LGL ++K +V+ G + S +GT E PL Sbjct: 627 LGLAISKKLVELMGGTLSLQSVVGQGTTFEFTIPL 661 >gi|332534411|ref|ZP_08410251.1| sensor protein [Pseudoalteromonas haloplanktis ANT/505] gi|332036145|gb|EGI72620.1| sensor protein [Pseudoalteromonas haloplanktis ANT/505] Length = 786 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 128/246 (52%), Gaps = 7/246 (2%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 ++ + L K+ A++ S K FLA +SHE+RTP+ I G + Q YIE Sbjct: 400 KQTHTLRKEKQKADEASHIKGQFLANMSHEVRTPINGIKGLHYLALQQNDWQQAR-SYIE 458 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A D + ++L ++ND+LD SK+E+GK++L EP+++ E ++L+Q A+ K I Sbjct: 459 QA---DGALGVLLRVLNDVLDFSKMEAGKLDLMQEPINVASLADEMLNLLQFEADIKSIK 515 Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + F ++ D +KQ+ LN+L+NA+ FT G I S + + DT Sbjct: 516 LSLDFDKTSNLVINTDPIRLKQVLLNLLNNAVKFTGEGE--ITLKIWQSKKMTYFSINDT 573 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+++ ++ KPF Q +S + GTGLGL + + +V+ G + S KG+ Sbjct: 574 GIGISSEAQKQLFKPFAQADSSTSRQYGGTGLGLSICRKLVELMGGAIDLVSYEGKGSTF 633 Query: 805 EIIFPL 810 PL Sbjct: 634 TFSLPL 639 >gi|329925067|ref|ZP_08280011.1| PAS domain S-box protein [Paenibacillus sp. HGF5] gi|328940186|gb|EGG36518.1| PAS domain S-box protein [Paenibacillus sp. HGF5] Length = 609 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 94/370 (25%), Positives = 173/370 (46%), Gaps = 38/370 (10%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L SIL SDG+ + G ++ NR ++ G E++ H Sbjct: 262 KLASILTNMSDGVIATDEAGRVILMNRRAGEMLGVEGEEL----------------AGHD 305 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISEWKQE---K 568 + +L L+ ++ E + G + KLL + PF + T +H ++E Sbjct: 306 IVSLLGLEQSES-EALARGEGHDSKLLEITPREGGEPFMMRVTFTPIH-----RREIGIT 359 Query: 569 NKLSHAKKIAEKE--SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN----PR 622 ++ + + E+E + + +F+A VSHE+RTPLT I ++E +++ G L + PR Sbjct: 360 GTIAVLQDVTEQEKLEASRREFVANVSHELRTPLTTIKSYTEALED---GALEDKQMGPR 416 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 ++ I ++ +V DLL +S+++S + LH E + E + + +K Sbjct: 417 FV---GVIQNETGRMIRLVTDLLHLSRLDSKEAALHKERTDIVEMLEDVEDRFSFQMKQK 473 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 I + + D + Q+ N++SNA+ +TP GG I + + T + L V+ Sbjct: 474 HIRTIIEVKPGVSTAMLDRDGIDQVLDNLISNALKYTPDGGTITMDASITEEGMLSLSVK 533 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ +L++ + F ++ ++ GTGLGL +A+ +V A+ G + S KGT Sbjct: 534 DTGIGIPKKDLDRIFERFYRVDKARTRNLGGTGLGLSIAREIVRAHGGFITLQSELEKGT 593 Query: 803 LIEIIFPLYD 812 + PL D Sbjct: 594 TVTFTLPLDD 603 >gi|146338894|ref|YP_001203942.1| hypothetical protein BRADO1833 [Bradyrhizobium sp. ORS278] gi|146191700|emb|CAL75705.1| conserved hypothetical protein; putative sensor histidine kinase with a response regulator receiver domain [Bradyrhizobium sp. ORS278] Length = 787 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 116/222 (52%), Gaps = 8/222 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KSDFLA +SHEIRTPL+ ++G ++++ N Y + S +L+L ++ND+ Sbjct: 400 KSDFLAIMSHEIRTPLSGMVGMVDLLRGTSL----NDEQKRYTSLAKESADLLLQVINDI 455 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRS 703 LD SK+E+GK+ + V A+S + A + + ++ SFA +P+ L D Sbjct: 456 LDFSKLEAGKLKSECIDFDVPSLVESAVSFMGEKARRRGLDLKVSFAPGLPQYLEGDPTR 515 Query: 704 VKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVR--DTGVGMTNYELEKAMKPF 760 ++Q+ LN++ NAI FT G ++ S + V LR+ D+G+GM+ + PF Sbjct: 516 IRQVMLNLVGNAIKFTEQGAIEVHASHRELDDGAVDLRIEVIDSGIGMSQEIQAQIFDPF 575 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 Q S + G+GLGL + K + G + S P +G+ Sbjct: 576 VQADTSISRKYGGSGLGLAICKQLCAIMGGSIGVESEPGRGS 617 >gi|118590844|ref|ZP_01548244.1| Multi-sensor Hybrid Histidine Kinase [Stappia aggregata IAM 12614] gi|118436366|gb|EAV43007.1| Multi-sensor Hybrid Histidine Kinase [Stappia aggregata IAM 12614] Length = 774 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 81/252 (32%), Positives = 128/252 (50%), Gaps = 10/252 (3%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A + AE + KS FLA + HEIRTPL I+G +E++ + PL Y I RS Sbjct: 243 AYEAAEAGNKAKSAFLATIGHEIRTPLNGILGMAELLAQK---PLPAEES-GYVRTITRS 298 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV--QLYANEKRILIRTSFA 691 G +L+++N++LD +KIE G LD+ V + ++V Q+ + + A Sbjct: 299 GRALLEMINEILDYAKIEYGSQQSEEIIFRLDDLVRDTAAVVEGQVLEQNNDLKLHIDPA 358 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTGVGM 748 + I +D +K+I LN+LSNA+ FT +G + T +E + + VRD+G+G+ Sbjct: 359 LDGAFIKSDPTRLKRILLNLLSNAVKFTENGSVWLEVTAGNVTDETLELNVSVRDSGIGI 418 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + ++ F Q+ +S R GTGLGL + K +V+A G + STP +G Sbjct: 419 ASDAQKQLFTAFHQVDSSISRRFGGTGLGLAICKQIVEAMQGTIGVSSTPGEGATFSFTV 478 Query: 809 PLYDTSHPHDCI 820 P+ P CI Sbjct: 479 PVQRAKAPA-CI 489 >gi|104781536|ref|YP_608034.1| sensor histidine kinase/response regulator [Pseudomonas entomophila L48] gi|95110523|emb|CAK15231.1| putative sensor histidine kinase/response regulator [Pseudomonas entomophila L48] Length = 1093 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 134/252 (53%), Gaps = 12/252 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPLGNPRYIEYAN 628 +L AK AE+ S KS FLA +SHEIRTP+ A+IG E+ +++ R G + + +E A+ Sbjct: 585 QLRQAKNDAEQASQAKSTFLAVMSHEIRTPMNAVIGLLELALEDSRRGR-SDTQALETAH 643 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 S +LD++ D+LDIS+IESG M L L V + + + A K I +R+ Sbjct: 644 G---SAIGLLDLIGDVLDISRIESGHMTLQAVATDLTGLVKATVRVFEGNARIKGIQLRS 700 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDT 744 + + + D KQ+ N+LSNAI FT GQI ++ T ++ + V L+V+DT Sbjct: 701 ALPDRPCWVTVDPLRFKQVLSNLLSNAIKFTDQ-GQIDVTLTADASSKHGLLVALQVKDT 759 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G G++ + + F Q+ QQ R +G GLGL +++ + G+ + S GT + Sbjct: 760 GKGISASDQTRLFSAFSQV-GDQQNR-QGAGLGLVISRNLCALMGGELSLQSIEGLGTQV 817 Query: 805 EIIFPLYDTSHP 816 ++ L P Sbjct: 818 DVHLSLAAADAP 829 >gi|256828469|ref|YP_003157197.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577645|gb|ACU88781.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 627 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 76/261 (29%), Positives = 139/261 (53%), Gaps = 10/261 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 ++ E + +++LS AK+ AE + K+ FLA +SHEIRTP+ I+G E+ + P Sbjct: 228 EVEERRIAESRLSQAKEQAESATQAKTQFLANMSHEIRTPMNGIMGMLELAMDNS-DPAV 286 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +Y++ A RS + +ND+LD+S++E+ +M + EP ++ E + E Q Sbjct: 287 MQKYLQTAMRSSRSLLRL---LNDILDLSRLEASRMPVVEEPFNIRELMEELTDSFQAVV 343 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIIST---THTSN 734 ++ + +R++ N+P +L D ++QI N++ NA+ FT G +I +S+ + Sbjct: 344 LDRGLALRSTVDENVPPFLLGDSVRIRQILTNLIGNAVKFTLRGKVEIRVSSLTPARSGA 403 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + + V DTGVG+ + PF Q ++Q + EG+GLGL + + +V +G Sbjct: 404 HRIYIEVEDTGVGIPDQAQTGLFAPFAQADSTQTRKFEGSGLGLSITQQLV-VLLGGSLA 462 Query: 795 FSTPAKGTLIEIIFPLYDTSH 815 F + G+L + PL+ + Sbjct: 463 FESSPHGSLFAVCLPLHPATQ 483 >gi|209521002|ref|ZP_03269737.1| multi-sensor hybrid histidine kinase [Burkholderia sp. H160] gi|209498574|gb|EDZ98694.1| multi-sensor hybrid histidine kinase [Burkholderia sp. H160] Length = 1498 Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 86/257 (33%), Positives = 133/257 (51%), Gaps = 10/257 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D S + +L+ A+ +AE S K +F A +SHEIRTP+ ++G EV++ PL Sbjct: 822 DASVERARNEELARARDVAEAASRAKDNFFAMMSHEIRTPMNGVLGLVEVLERT---PLS 878 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + E I S +L I++DLLD SKIE+G++ L EPV L E V A+ L+ A Sbjct: 879 TDQS-EMLGMIHESAGALLQILDDLLDYSKIEAGRLTLEAEPVDLRELVDNAVGLLAGRA 937 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTT---HTSNE 735 +EK + +R A + L D ++QI N+L NAI FTP G + + ++ Sbjct: 938 HEKGLKVRVEIAARVAATLRGDSVRLRQILFNLLGNAIKFTPKGEVGVSVSVVEDRADSQ 997 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + L VRDTG+G+ +PF Q +S R GTGLGL + + +++ G + Sbjct: 998 TLDLTVRDTGIGIAPDAQAGLFEPFVQAESSTTRRFGGTGLGLTICRKLIELMNGTLTLR 1057 Query: 796 STPAKGT--LIEIIFPL 810 S GT ++ + P+ Sbjct: 1058 SELGHGTSMIVRLTMPV 1074 >gi|95930793|ref|ZP_01313525.1| histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95133141|gb|EAT14808.1| histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 591 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 87/255 (34%), Positives = 131/255 (51%), Gaps = 14/255 (5%) Query: 558 MHDISEWKQEKNKL--SH-----AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + +IS KQ + KL +H AK+ AE + KS F+A +SHEIRTPL A+IG ++ Sbjct: 183 IKEISRRKQAEKKLLDTHQALCLAKEGAEVANQTKSVFIANISHEIRTPLNAVIGMVHLL 242 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 K R G + + I+ + +L ++ND LD+SK+E+GK+ L P++L V E Sbjct: 243 K--RDGLTEKQAF--RVDKIEDASQHLLSVINDTLDLSKVEAGKLVLESVPLNLPSLVQE 298 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII-IST 729 IS++ K + ++ N R+ D +KQ+ LN L+NAI FT G S Sbjct: 299 TISMLDGQIEAKGLDLKVECENLRGRLHGDPTRLKQMLLNYLTNAIKFTEQGAITFRASV 358 Query: 730 THTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 T S +LR V DTG+G+ +L F Q S + GTGLGL L + + + Sbjct: 359 TEESPSVSLLRIEVTDTGIGIATEQLPLLFSNFAQAETSTTRKYGGTGLGLALTRRLAEL 418 Query: 788 NMGKFYIFSTPAKGT 802 G+ + ST G+ Sbjct: 419 MEGEAGVQSTVGLGS 433 >gi|322704067|gb|EFY95666.1| putative histidine kinase HHK2p [Metarhizium anisopliae ARSEF 23] Length = 2075 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 81/262 (30%), Positives = 130/262 (49%), Gaps = 21/262 (8%) Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 +S Y + DI++ K + KL A + K FL+ +SHEIRTPL I G + Sbjct: 1386 ASSYFGSATDINDHKLLEAKLKEAME-------SKGRFLSNMSHEIRTPLIGISGMVSFL 1438 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 ++ N +Y N I S N ++ I+ND+LD+SK+++G M L +E + + Sbjct: 1439 QDTTL----NEEQRDYTNTIQTSANSLIMIINDILDLSKVDAGMMKLKYEWFHTRSLIED 1494 Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 LV A KR+ + ++P + D ++Q+ LN++ NAI FT G Sbjct: 1495 VNELVSTMAIAKRLELNYLVEADVPAWVKGDKVRIRQVLLNVIGNAIKFTAEGEVFSRCR 1554 Query: 730 THTSNE-------EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 +T + E++L+ + DTG G T E E KPF QI S + G+GLGL + Sbjct: 1555 VYTEEDPAVCNENEIMLQFAITDTGRGFTKEEAELIFKPFSQIDGSSTRQHGGSGLGLVI 1614 Query: 781 AKAMVDANMGKFYIFSTPAKGT 802 ++ +V+ + GK + P KG+ Sbjct: 1615 SRQLVELHGGKMEGTAIPGKGS 1636 >gi|315641356|ref|ZP_07896432.1| sensor histidine kinase VicK [Enterococcus italicus DSM 15952] gi|315482929|gb|EFU73449.1| sensor histidine kinase VicK [Enterococcus italicus DSM 15952] Length = 613 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 99/374 (26%), Positives = 182/374 (48%), Gaps = 32/374 (8%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR-AVSKLFGYPVEDILRKPFTVFLE 502 + +E E +L S+L +DG+ +R G +++ N A+S L E+ + + LE Sbjct: 254 QEAIESERNRLNSVLSHMTDGVIATDRRGKVITINEMALSLLDKKNEEEAIGQSILDLLE 313 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYSLTM 558 + L + L ++ ++ G L LR+ I + F S + Sbjct: 314 IGEEYTLRTLLESSNEMLLHRSSSEVESGQ------LILRVDFSMIRRDSGFISGIVAVI 367 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 HD++E QEK EKE + DF++ VSHE+RTPLT++ + E + + + Sbjct: 368 HDVTE--QEK---------TEKE---RRDFVSNVSHELRTPLTSMHSYLEALSDGAWRDE 413 Query: 619 G-NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 P +++ +D + ++ ++NDLL++S+++ G L E V+ +E V ++ + Sbjct: 414 EIAPDFLKVT--LDETDRMI-RMINDLLNLSRMDGGNAQLQKEYVNFNELVHFVLNRFDM 470 Query: 678 Y--ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 EKR +IR F + D + Q+ NI++NAI ++P GG I +S + T N Sbjct: 471 MVTGKEKRYVIRRDFTQRDLWVEVDADRMIQVIDNIMNNAIKYSPDGGVITVSLSETHNH 530 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++L +RD G+G+ +L K F ++ ++ + GTGLGL +++ ++ A+ G + Sbjct: 531 -ILLSIRDQGMGIPKVDLAKIFTRFYRVDKARARKQGGTGLGLAISREVIKAHKGSIWAE 589 Query: 796 STPAKGTLIEIIFP 809 S G+ I P Sbjct: 590 SKENYGSTFYISLP 603 >gi|238026819|ref|YP_002911050.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1] gi|237876013|gb|ACR28346.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1] Length = 1182 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 127/236 (53%), Gaps = 9/236 (3%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ S +KS+FLA +SHE+RTPL + + + +++ R G L + + + YA I S + +L Sbjct: 482 EQSSRYKSEFLANMSHELRTPLNSSLILARLLQENRTGNLTDEQ-VRYAETIHASNSDLL 540 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP--- 695 ++ND+LD+SK+E+G++ + E VSLD + SL + + P Sbjct: 541 VLINDILDLSKVEAGQITIEPETVSLDALLQ---SLRETFEPMAAAKGLALALERTPGTP 597 Query: 696 -RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 +++D + V QI N+LSNA+ FT G + ++ + V L VRD+G+G+ +LE Sbjct: 598 ATLVSDGQRVTQILRNLLSNALKFTEHGA-VTLTISAEGQRMVRLDVRDSGIGIAADKLE 656 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F Q S + G+GLGL +++ G+ + S P KG++ + PL Sbjct: 657 LIFEAFQQADGSTSRQYGGSGLGLSISREFARLLGGRIGVASEPGKGSVFTLWLPL 712 >gi|237720764|ref|ZP_04551245.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229449599|gb|EEO55390.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 810 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 128/253 (50%), Gaps = 14/253 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +DI+ K+ + KL A+ AE+ KS FLA +SHEIRTPL AI+GFS ++ Sbjct: 565 YDITPLKETEQKLIIARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETD---- 620 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 EY + + L+L +++D+LD+SKIE+G N + V ++E +E I + + Sbjct: 621 SRSERQEYIKIVQENNELLLQLISDILDLSKIEAGTFNFVYTNVDVNETCAEIIKSMSMK 680 Query: 679 ANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 ++ LI F P I D Q+ N ++NA+ FT G I + S+++ Sbjct: 681 VSKGVELI---FEEPFPECYIYTDKNRFTQVISNFINNALKFTQQGC-ITLGYEQVSHQK 736 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + VRDTG+G+ + + + F ++ Q GTGLGL + K++V G+ + S Sbjct: 737 IKFYVRDTGMGIPEEKQKSVFERFVKLNTFVQ----GTGLGLSICKSIVSQMGGEIGVDS 792 Query: 797 TPAKGTLIEIIFP 809 T G+ P Sbjct: 793 TEGVGSCFWFTHP 805 >gi|162449617|ref|YP_001611984.1| hybrid histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161160199|emb|CAN91504.1| Hybrid histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 949 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 121/229 (52%), Gaps = 8/229 (3%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A + S KS+FLA +SHEIRTP+ I+G +++NQ + + Y +D S N + Sbjct: 308 ALEASRMKSEFLANMSHEIRTPMNGILGVIRLMQNQSL----DGKMRRYVETVDASANTL 363 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696 + I+ND+LD SK+E+GK L + E L+ A+EK + + +P Sbjct: 364 MSIINDVLDFSKLEAGKYVAQHVSFDLRLVIQEVAELMASQAHEKGLELVYRVERRVPTG 423 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYEL 753 ++ D +Q+ N++ NAI FT G +I ++T ++ + L V DTG G+ + Sbjct: 424 VVGDPDRFRQVLTNLVGNAIKFTDRGEVLIDASTSQQDKATALIKLAVVDTGPGIAPDDQ 483 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +K F Q+ S + GTGLGL ++K +V+ G+ + STP +G+ Sbjct: 484 KKLFAAFSQVDGSLVRKHGGTGLGLAISKRLVEVMGGEVGLDSTPGQGS 532 >gi|209524981|ref|ZP_03273526.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209494630|gb|EDZ94940.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1242 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 74/249 (29%), Positives = 130/249 (52%), Gaps = 12/249 (4%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++L A++ A + S KS FLA +SHEIRTP+ ++G + ++ + + ++ Sbjct: 566 DELVKAREAALENSRLKSQFLANMSHEIRTPMNGVLGMTGLLLKTEL----DTKQKDFVQ 621 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I S + +L I+ND+LD SK+E+ ++ L L+E + I L+ A K I + Sbjct: 622 AIRTSADHLLSIINDILDFSKLEAQEIELEELDFDLEECLENIIDLLAAQAENKGIELAA 681 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV----ILR--V 741 N+PR L D ++Q+ LN++SN I FTP+ G++ + + N ++ LR V Sbjct: 682 IVDRNVPRYLRGDPGRLRQVLLNLMSNGIKFTPA-GEVTLRVSRPPNYDINAPLTLRYEV 740 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +DTG+G+ E+ + F Q+ S + GTGLGL + K +++ G+ + S +G Sbjct: 741 QDTGIGIPAEAQERVFEAFSQVDASTTRKFGGTGLGLVICKQLLEVMGGEIGLESVVDQG 800 Query: 802 TLIEIIFPL 810 + P Sbjct: 801 STFWFTLPF 809 >gi|320449472|ref|YP_004201568.1| signal transduction histidine-protein kinase BaeS [Thermus scotoductus SA-01] gi|320149641|gb|ADW21019.1| signal transduction histidine-protein kinase BaeS [Thermus scotoductus SA-01] Length = 373 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 126/243 (51%), Gaps = 10/243 (4%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 N+L+ A E+ + + + V+HE+RTPL+A+ ++E + + P + A Sbjct: 134 NRLAEA---LERVEQSRVELIGTVAHELRTPLSALQAYAEALADGVMEP------EKAAE 184 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I + + +V DL +S++ESG + LH P+ E + +A + K + + Sbjct: 185 RIQQEVRAMSRLVRDLSLVSQVESGAVELHPGPLDPKELLEQAAERFRPAFQAKGVALEV 244 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + + +PR+ AD Q+ N+LSNA+ TP GG++ + T + V+ V DTG G+ Sbjct: 245 AAPSFLPRVWADAERTLQVLANLLSNALRHTPEGGRVRLGAERT-GQAVVFSVEDTGPGI 303 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 L + + F +I S+ + GTG+GL +AK++V+A G+ ++ S +G++ Sbjct: 304 PEEHLPRIFERFYRIDPSRSRQDGGTGVGLTIAKSLVEAMGGRIWVESQLGRGSVFRFTL 363 Query: 809 PLY 811 PLY Sbjct: 364 PLY 366 >gi|238792676|ref|ZP_04636308.1| Histidine kinase [Yersinia intermedia ATCC 29909] gi|238728032|gb|EEQ19554.1| Histidine kinase [Yersinia intermedia ATCC 29909] Length = 1254 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 140/256 (54%), Gaps = 11/256 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DIS+ K + +L A+ AE + KS FLA +SHE+RTP+ AI+G E+ I++ + P+ Sbjct: 680 DISQRKTVERELEAARLEAESANRTKSTFLATISHELRTPMYAIMGLLELEIRSAQ--PV 737 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + +S ++ +++D++D +KIE+G++++H V + + +++ Q Sbjct: 738 DKNTLVT----VSKSAQSLMLLLDDIIDSAKIEAGQLSVHPAAVDFRQEMERMLTIYQPI 793 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE 736 A+E+ + + IP +L AD+ V+Q+ N+L NA+ FT GG + ++ T +++ Sbjct: 794 ADERGLRFSGWLDDQIPHLLMADMLRVRQVMGNLLGNALKFTEQGGVSVDVTWEPTDDKQ 853 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 ++ + DTG+G++ +PF Q + R G+GLGL + ++ G+ + Sbjct: 854 GVMNIDITDTGIGISPAAQATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGQVAM 913 Query: 795 FSTPAKGTLIEIIFPL 810 S KGT + I PL Sbjct: 914 ESQLGKGTSLFITLPL 929 >gi|117923614|ref|YP_864231.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607370|gb|ABK42825.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 899 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 74/249 (29%), Positives = 140/249 (56%), Gaps = 16/249 (6%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L+ AK+ AE+ ++ KS FLA +SHEIRTP+ AI+G ++++K+ P E A + Sbjct: 380 QLALAKREAEEANAAKSRFLATMSHEIRTPMNAIVGMADLLKD-------TPLDREQARF 432 Query: 630 I---DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + R+G+ ++D++ND+LD+SK++SG++++ + + + +++ A K++ + Sbjct: 433 VATFQRAGDQLMDLLNDILDLSKVQSGQIHIEVVETDIRTLLDDLSAMMVAKARVKQVDL 492 Query: 687 RTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV----ILRV 741 + N+P R+ D ++Q+ +N+L NAI FT + G++ + TS+ EV + Sbjct: 493 LFNPHPNLPARVGVDPLRLRQVMINLLGNAIKFT-ANGEVELRAYFTSSSEVPYGLGFEI 551 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ L+ + F Q S + GTGLGL +++ +V G + ST +G Sbjct: 552 SDTGIGIDETRLKAIFEAFTQADLSVTRQFGGTGLGLTISRHLVALMGGDIQVESTIGQG 611 Query: 802 TLIEIIFPL 810 + P+ Sbjct: 612 SRFWFEIPI 620 >gi|226225795|ref|YP_002759901.1| putative two-component histidine kinase [Gemmatimonas aurantiaca T-27] gi|226088986|dbj|BAH37431.1| putative two-component histidine kinase [Gemmatimonas aurantiaca T-27] Length = 423 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 77/262 (29%), Positives = 135/262 (51%), Gaps = 16/262 (6%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M D++ K +L + A+ + K+ LA +SHE+RTPLTA+ G+ E+++++ G Sbjct: 168 VMADLAALALWKARL---LEDAQSADAAKTSLLATLSHELRTPLTALEGYGELLEDEILG 224 Query: 617 PLGNPRYIEYANYIDR---SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 PL + E + I R G + ++ D+L + +E+ ++ V LDE + Sbjct: 225 PLSH----EQRDVITRLRTVGRHLGSLIEDILTYASLEADRLTARPSAVRLDELLDSLHP 280 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++ A EK I +P + D V+QI LN+ NAI FT SG + + + S Sbjct: 281 FLEPLAREKGIDFVIDPEGGLPGMHTDEAKVRQILLNLCQNAIKFTESG-SVTLRVSRGS 339 Query: 734 ---NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + V LR V+DTG+G+ +L++ +PF Q+ + R GTGLGL +A+ + Sbjct: 340 PMPDGGVSLRFAVKDTGIGIATADLQRLFRPFSQLEDVPTRRRGGTGLGLYIARRLATLL 399 Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810 G+ + S P +G++ ++ P+ Sbjct: 400 GGRIEVVSRPGEGSVFTLVLPV 421 >gi|89893070|ref|YP_516557.1| hypothetical protein DSY0324 [Desulfitobacterium hafniense Y51] gi|89332518|dbj|BAE82113.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 485 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 134/232 (57%), Gaps = 5/232 (2%) Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 E+ KS+FL +SHE++TPL++II F+++ K+ R R ++ I + +L+ Sbjct: 253 ENEMKSNFLTIMSHELKTPLSSIIAFTDIWEKSSREKSEDEQRLVQE---IKENSRTLLN 309 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699 +VN+ +D++++E+G+ + ++ V L + VS +S+ A + I + + + P I++ Sbjct: 310 MVNNTIDVARLEAGRFEITYDEVELVDIVSAVVSVAHPIAVKHNISLEKRISPDTPIIIS 369 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMK 758 D ++++I +N++SNA+ FT +GG++ IS ++ S+ V+++V DTG G+ + ++ + Sbjct: 370 DWEALRKILMNLVSNALKFTGAGGKVDISVSYLSDRSRVVIQVADTGAGIPEKDHDQIFE 429 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F Q R G+GLGL L K + + G+ + S +G+ + P+ Sbjct: 430 RFTQSTQPGDERINGSGLGLFLVKTLTEKLGGEIEVDSVVERGSSFSVYVPI 481 >gi|300778577|ref|ZP_07088435.1| sensor histidine kinase/response regulator fusion protein [Chryseobacterium gleum ATCC 35910] gi|300504087|gb|EFK35227.1| sensor histidine kinase/response regulator fusion protein [Chryseobacterium gleum ATCC 35910] Length = 1202 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 127/232 (54%), Gaps = 3/232 (1%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + +KS+FLA +SHE+RTPL +I+ S ++ L N +E A I SG+ +L ++ Sbjct: 523 TKYKSEFLANMSHELRTPLNSILLLSRLMTENPDENL-NEDQVESARVIHSSGSSLLTLI 581 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700 +++LD++KIESGKM L ++ V ++E V + SL EK + ++ +++ +D Sbjct: 582 DEILDLAKIESGKMTLEYQKVIIEEVVKDLKSLFNPVFQEKALPFNIVIDEDVQKVIESD 641 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKP 759 + Q+ N+LSNA+ FT G + HT + +I V+DTGVG+ + + + Sbjct: 642 RLRIDQVLRNLLSNALKFTTKGSIDLHIRKHTEKPDFIIFSVKDTGVGIAEDKQKIIFEA 701 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 F Q S + + GTGLGL +++ + G+ + S KG+ I P++ Sbjct: 702 FQQADGSTKRKFGGTGLGLSISREIARLLGGELVLKSEVDKGSEFSFIIPVH 753 >gi|255764476|ref|YP_003065238.2| two-component sensor histidine kinase protein [Candidatus Liberibacter asiaticus str. psy62] gi|254547827|gb|ACT57298.2| two-component sensor histidine kinase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 792 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 94/357 (26%), Positives = 174/357 (48%), Gaps = 20/357 (5%) Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 S+G+A+ +G I +N A L + E+ P T +N + + Y E DL Sbjct: 444 SEGVAVFGPDGRIKLSNPAFRSL--WKTEENRLSPGTHI--RNIAATCSRYYNESDGWDL 499 Query: 522 RQTL------EKITLGSTKEEKLLSLRII---IKKLPFSSCYSLTMHDISEWKQEKNKLS 572 + E+ +L T E LLS ++ I LP + LT ++++ + + L+ Sbjct: 500 FAAIITSFDDERKSLQGTLE--LLSDSVLEYSIIPLPNAQTM-LTFVNVTDSVRAERALT 556 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 + K K+ F+ VS+E+R+PLT IIGF++++K + G L N + +Y YI Sbjct: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISA 615 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 S ++L++VND+LD++ +++G M L++ + L++ ++E + +E I I+ Sbjct: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 + +AD + + QI ILSNA+ F+ G +I+ N + I V++ G + Sbjct: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDM 734 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F + N+ + + G GLGL + ++ ++ + G I S+ T I P Sbjct: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 >gi|170750082|ref|YP_001756342.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170656604|gb|ACB25659.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 1124 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 82/264 (31%), Positives = 135/264 (51%), Gaps = 20/264 (7%) Query: 556 LTMH-DISEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + +H DI+E K + L A+ AE+ S+ KS+FLA +SHEIRTPL I+G++ Sbjct: 569 VALHLDITERKAVEAALRTATRDAEAARTEAERASAAKSEFLAAMSHEIRTPLNGILGYA 628 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 +++ + + R +E I SG +L +VND+LD SKIE+G++ L L Sbjct: 629 DLLLDGDAIQNEDRRRLE---LIQSSGAALLTVVNDILDFSKIEAGELTLDPVTFPLVSI 685 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII 726 V +S+V+ A + I +P ++ D ++Q+ LN+L+NA+ FTP G + Sbjct: 686 VDGTVSIVRGSALRSGLAIEARIDPALPTFVVGDAGRLRQVLLNLLNNAVKFTPEGSVTV 745 Query: 727 ISTTHTS--------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 I + + V V DTG+G+ + ++ K F Q+ S R GTGLGL Sbjct: 746 IVEREDAGGAPDGRPGDTVRFSVVDTGIGIAPAQQDRLFKRFSQVDGSISRRFGGTGLGL 805 Query: 779 PLAKAMVDANMGKFYIFSTPAKGT 802 +++ +V G+ + S G+ Sbjct: 806 AISRHLVTLMGGEIGVESREGAGS 829 >gi|168052144|ref|XP_001778511.1| sensory histidine protein kinase [Physcomitrella patens subsp. patens] gi|162670109|gb|EDQ56684.1| sensory histidine protein kinase [Physcomitrella patens subsp. patens] Length = 328 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 123/239 (51%), Gaps = 15/239 (6%) Query: 581 ESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 ++SH KSDFLA +SHEIRTP+ I+G + ++ P E + +L+L Sbjct: 1 QASHAKSDFLANMSHEIRTPIHGILGLTALLLESEL----TPDQTESLESVKECADLLLH 56 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL- 698 I+N +LD++KIE+G++ + P ++ + VS ++Q A ++ + + +P+ L Sbjct: 57 IINSVLDLAKIEAGRLEVEKVPFNIRKMVSSTFRMLQARAQQRGLKLLWEVDKCVPQTLV 116 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYE 752 D+ ++Q LN++ N++ FT G +++ + N+E V VRDTG+G++ + Sbjct: 117 GDVGKLQQCLLNLVGNSLKFTHKG---LVTVKGSLNQEAPGRVNVEFEVRDTGIGISQEK 173 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 L KPF Q S GTGLGL + + V+ G S KG+ I P Y Sbjct: 174 LLDMFKPFTQAEASTSRLYGGTGLGLCIVQRFVELLGGTISAESELGKGSAFYIRLPFY 232 >gi|24214922|ref|NP_712403.1| two component system sensor histidine kinase\response regulator [Leptospira interrogans serovar Lai str. 56601] gi|45657575|ref|YP_001661.1| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24195953|gb|AAN49421.1| sensor histidine kinase and response regulator of a two component complex [Leptospira interrogans serovar Lai str. 56601] gi|45600814|gb|AAS70298.1| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 832 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 117/232 (50%), Gaps = 7/232 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSE-VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS F A VSHE+RTPLT I+G + ++K+Q G R + I+R+ +L VND Sbjct: 209 KSQFFANVSHELRTPLTLILGPTRALLKDQ--GITSTQR--TFLETIERNSYTLLKHVND 264 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 LLD+SK++SGKM L + +L E + S E+ I N P I D+ Sbjct: 265 LLDLSKLDSGKMTLKYSNANLSEVIRYIASHFDSITKERNIDFVLMIPENFP-IQMDVSK 323 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 V++I LN++SNA F P G+I+ T + + D G G+ + ++ + F QI Sbjct: 324 VERIILNLISNAFKFVPDSGKILCEL-KTEGTMASIYIADNGPGIPIHLRDQIFEKFRQI 382 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 GTGLGL + K VD ++G +F + G L ++ P+Y H Sbjct: 383 EEGDSRSFGGTGLGLAIVKEFVDLHLGSIGVFDSFLGGALFKVQIPIYAPIH 434 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 117/256 (45%), Gaps = 16/256 (6%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 ++ +H+ S K+ L +A A+ ES F VSH++R P+ I GF ++I + Sbjct: 584 NVKVHNFSVLKKTIETLENAN--ADMES-----FSYSVSHDLRAPILVIEGFLQIIL-ED 635 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 F +P + + ++ + ++ DLL K+ K++L + +D+ V + I+ Sbjct: 636 FSEKMDPEALRSLKIVHKNVVYMNHLIQDLLSFHKV--SKIDLPIRLIEMDKMVQDVIAT 693 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 V +K L + + +P LA+ ++KQ+ +N++SNA+ ++ + I Sbjct: 694 VLQNYPKKNYLFQ---VDELPNALANGAALKQVWMNLISNAVKYSSTRETPFIKIGFEEM 750 Query: 735 EEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + + D GVG K K F ++ ++ EGTG+GL + +V + G+ + Sbjct: 751 DGFNNYFIEDNGVGFNKAYSNKLFKVFQRLHTQEEF--EGTGVGLAIVSKIVQRHGGQVF 808 Query: 794 IFSTPAKGTLIEIIFP 809 KG+ P Sbjct: 809 AEGEVNKGSKFSFTLP 824 >gi|310827090|ref|YP_003959447.1| hypothetical protein ELI_1498 [Eubacterium limosum KIST612] gi|308738824|gb|ADO36484.1| hypothetical protein ELI_1498 [Eubacterium limosum KIST612] Length = 1426 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 132/250 (52%), Gaps = 14/250 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ K L A +AEK + KSDFL+ +SH+IRTP+ A++G + + + R Sbjct: 1024 RRTKAALEKALSLAEKANQAKSDFLSSMSHDIRTPMNAVMGMTTLAAAHLD---DSARVR 1080 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + + I + +L ++ND+LD+SKIE ++ L+ +++ + +S+ +++ A + Sbjct: 1081 DCLDKIVVASRHLLSLINDILDMSKIERSQITLNHSAIAVSDLLSQLNAMIAPQAADNG- 1139 Query: 685 LIRTSFANNI--PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 L ++ NI P DL + QI +N+LSNAI FTP GG++ + + + VR Sbjct: 1140 LSYSARTENIRHPYFYGDLLRINQILINLLSNAIKFTPEGGRVELRVEEIAPVKAPDAVR 1199 Query: 743 ------DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 DTGVGM+ L +PF + N ++ EGTGLGL + K +VD G+ S Sbjct: 1200 YRFIVSDTGVGMSEAFLIHVFEPFTRDRNVTRV--EGTGLGLSITKGLVDLMEGEITAES 1257 Query: 797 TPAKGTLIEI 806 GT+ + Sbjct: 1258 QERAGTVFRV 1267 >gi|289620411|emb|CBI53269.1| putative histidine kinase group protein [Sordaria macrospora] Length = 2114 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 80/261 (30%), Positives = 132/261 (50%), Gaps = 20/261 (7%) Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 +S Y + DI++ K + KL A + KS FL+ +SHEIRTPL I G + Sbjct: 1400 ASSYFGSATDINDLKLLETKLKEAME-------SKSRFLSNMSHEIRTPLIGISGMVSFL 1452 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 ++ N +Y N I S N ++ I+ND+LD+SK+++G M L++E + + Sbjct: 1453 QDTTL----NEEQRDYTNTIQTSANSLIMIINDILDLSKVDAGMMKLNYEWFHTRSLIED 1508 Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-----GQ 724 LV A KR+ + ++P + D ++Q+ LN++ NAI FT G + Sbjct: 1509 VNELVSTMAIAKRLELNYVVEEDVPAWVKGDKVRIRQVLLNVIGNAIKFTNEGEVFSRCK 1568 Query: 725 IIISTTHTSNEEVIL---RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 +++ +E I+ + DTG G T E E KPF QI S + G+GLGL ++ Sbjct: 1569 VVVPDDGPLHENEIMLEFSIIDTGRGFTKEEAELIFKPFSQIDGSSTRQHGGSGLGLVIS 1628 Query: 782 KAMVDANMGKFYIFSTPAKGT 802 + +V+ + GK + P +G+ Sbjct: 1629 RQLVELHGGKMDGTAVPGEGS 1649 >gi|332535478|ref|ZP_08411259.1| putative sensory box histidine kinase/response regulator [Pseudoalteromonas haloplanktis ANT/505] gi|332035088|gb|EGI71603.1| putative sensory box histidine kinase/response regulator [Pseudoalteromonas haloplanktis ANT/505] Length = 925 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 126/249 (50%), Gaps = 13/249 (5%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A AE+ S K+ FLA +SHEIRTP+ +IG ++++ + + I Sbjct: 264 LEQATIKAERASETKTTFLATMSHEIRTPMNGVIGTIDLLRQTELDGAQH----RLSTII 319 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 S +L I++D+LD SKIE+GK+N+ P S+ + + E ++ A ++ + + + Sbjct: 320 RESAFSLLSILDDILDFSKIEAGKLNIDPIPFSVTDTIEEVARVLSSVAKKRELDLELAI 379 Query: 691 ANNIP-RILADLRSVKQIALNILSNAIHFTPSG----GQIIIS--TTHTSNEEVILR--V 741 A +IP + D V+Q+ N+ SNAI FT + G + IS H + + LR V Sbjct: 380 APDIPINLTGDSVRVRQVLYNLCSNAIKFTSTDEKTQGHVKISVEVVHNTTDHFTLRFCV 439 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D G GM+ +L + PF Q NS GTGLGL + K++ + +G ++ S G Sbjct: 440 TDNGKGMSQAQLREIFNPFIQAENSITREYGGTGLGLSICKSLTELMLGTIHVTSHTGIG 499 Query: 802 TLIEIIFPL 810 + + P Sbjct: 500 SEFTVELPF 508 >gi|325279566|ref|YP_004252108.1| GAF sensor signal transduction histidine kinase [Odoribacter splanchnicus DSM 20712] gi|324311375|gb|ADY31928.1| GAF sensor signal transduction histidine kinase [Odoribacter splanchnicus DSM 20712] Length = 945 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 84/255 (32%), Positives = 127/255 (49%), Gaps = 18/255 (7%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI K+ + L AK AE+ KS F+A +SHEIRTPL AI+GFS ++ ++ Sbjct: 702 DIDNLKKIEANLIQAKAKAEESDRLKSAFIANMSHEIRTPLNAIVGFSNLLASEM--DFS 759 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 EY I + +L+L ++ND+LDISKIE+G M+ V L++ E S+ QL A Sbjct: 760 EEDKAEYTRIISVNNDLLLQLINDILDISKIEAGVMDFTENTVELNQFFQEIESVFQLKA 819 Query: 680 N---EKRILIRTS--FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 E + + + +A I RI + Q+ N L+NA+ FT G I Sbjct: 820 KTGIEIKFIPEQAEEYAIKIDRI-----RLNQVISNFLNNALKFTRQGH--IFFGYRLRE 872 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +++ V DTG+G+ + + F ++ N Q GTGLGL + ++D GK + Sbjct: 873 KDIYFYVEDTGIGIPKDQQASVFRRFVKLNNFIQ----GTGLGLSICSTIIDKFNGKIGV 928 Query: 795 FSTPAKGTLIEIIFP 809 S P KG+ P Sbjct: 929 ESEPEKGSTFWFTIP 943 >gi|225574600|ref|ZP_03783210.1| hypothetical protein RUMHYD_02677 [Blautia hydrogenotrophica DSM 10507] gi|225038214|gb|EEG48460.1| hypothetical protein RUMHYD_02677 [Blautia hydrogenotrophica DSM 10507] Length = 442 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 125/224 (55%), Gaps = 6/224 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 + +F A VSHE++TPLTAI G+SE+I+N R + +A I S N +L ++ND+ Sbjct: 220 RQEFTANVSHELKTPLTAISGYSELIEN-RMAE--GEAAVRFAKEIHHSSNRLLTLINDV 276 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 + +S+++S ++ E V L E ++++QL A + ++ + + ++L+ + + Sbjct: 277 IHLSELDSMQLEETKEMVDLYEVARSCVAMLQLQAEKHQVNL--ALLGVSCQVLSTRQKM 334 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +++ N+ NAI + GG + + T S ++VIL V+DTG+G+ E+ + F ++ Sbjct: 335 EELVYNLCDNAIRYNNKGGSVYV-TVRPSGKKVILSVKDTGIGIPKEHQERIFERFYRVD 393 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 S+ GTGLGL + K +V + + S KGT I +IF Sbjct: 394 KSRSKSTGGTGLGLAIVKHIVAGSNASMELDSEEGKGTEIRVIF 437 >gi|160883653|ref|ZP_02064656.1| hypothetical protein BACOVA_01625 [Bacteroides ovatus ATCC 8483] gi|156111066|gb|EDO12811.1| hypothetical protein BACOVA_01625 [Bacteroides ovatus ATCC 8483] Length = 391 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 80/264 (30%), Positives = 129/264 (48%), Gaps = 12/264 (4%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +T+HD++ KQ + +L AK+ AEK KS FLA +SHEIRTPL AI GF+EV+ + Sbjct: 138 ITVHDVTRRKQAEKELRLAKEKAEKADISKSAFLANMSHEIRTPLNAITGFAEVLGS--- 194 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 +Y I + +L++ +VND+LD+SKIE+G + V +++ +S+ L Sbjct: 195 -ATTEEEKAQYQEIIKMNADLLMQLVNDILDMSKIEAGTLEFVQTTVDVNQLLSDLQQLF 253 Query: 676 QLYANEK--RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 Q+ ++ I I + + I D V Q+ N NAI FT G I Sbjct: 254 QMRVDDAGGNIQIIAESSRSSCMIQTDRNRVAQVLSNFAGNAIKFTHKGS--IRLGYEAR 311 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + E+ V+DTG G+ +L + F ++ ++ G GLGL +++ +V G+ Sbjct: 312 DTELYFYVKDTGTGIPAEKLPDVFERFVKLNKDKK----GAGLGLSISQTIVAKLGGQIG 367 Query: 794 IFSTPAKGTLIEIIFPLYDTSHPH 817 S +G+ P P Sbjct: 368 ANSVEGEGSTFWFTIPYRSCGKPR 391 >gi|37522318|ref|NP_925695.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35213318|dbj|BAC90690.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 1296 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 122/227 (53%), Gaps = 6/227 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +FLA + HE+RTPL IIG++++++ + GP + + +E I+R+ L +++DL Sbjct: 1065 KDEFLAILGHELRTPLNPIIGWTQMLRRGKVGPDKHDQALE---IIERNARLQTQLIDDL 1121 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+S+I G + + +P++L V A+ V+ A +K++ + P + AD + Sbjct: 1122 LDVSRIMRGSLRIAPQPITLAAIVVCALEAVRGLAEQKQVQLFEQLRTTAP-LSADPTRL 1180 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +Q+ N+L+NA+ FTP+GGQ+ + + L + DTGVG+ L + F Q Sbjct: 1181 QQVVWNLLTNAVKFTPAGGQVQVR-LESGGGMARLTISDTGVGIPAEFLPHLFERFRQAD 1239 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPL 810 +G GLGL + + +V+A+ G S KG ++ PL Sbjct: 1240 TKSTREQKGLGLGLFIVRHIVEAHGGTVQAESEGEGKGAAFTVVLPL 1286 Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/249 (28%), Positives = 121/249 (48%), Gaps = 8/249 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG-FSEVIKNQRFGPLGNPRYIEYANYID 631 A+ +AE + + K+ F + VSHE RTPL+ ++G +V+ + P E Sbjct: 362 RAEALAEIDRA-KTVFFSNVSHEFRTPLSLLLGPLEDVLAGD---GISAPTR-EQLTLAQ 416 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 R+G +L +VN LLD S+IE+G++ +F P L ++ +S+ + + + + Sbjct: 417 RNGRRLLKLVNTLLDFSRIEAGRIQANFLPTDLASLTAQLVSVFRSAVEKAGLRLVIDCP 476 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 + D ++I LN+LSNA FT G QI + + E V L + DTGVG+ + Sbjct: 477 PLAEAVYVDRDMWEKIVLNLLSNAFKFTLRG-QIAVRLRQQTGE-VCLELEDTGVGIAAH 534 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 EL + F ++ EG+G+GL L +V+ + GK + S +G+ + P Sbjct: 535 ELPRIFDRFHRVAGVAGRSHEGSGIGLALVAELVEIHGGKVSVQSVSGRGSTFTVRLPTG 594 Query: 812 DTSHPHDCI 820 P D I Sbjct: 595 TAHLPADRI 603 >gi|189466459|ref|ZP_03015244.1| hypothetical protein BACINT_02834 [Bacteroides intestinalis DSM 17393] gi|189434723|gb|EDV03708.1| hypothetical protein BACINT_02834 [Bacteroides intestinalis DSM 17393] Length = 1316 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 80/264 (30%), Positives = 137/264 (51%), Gaps = 17/264 (6%) Query: 564 WKQEKNKLSHAK--KIAEKESSHKSD-----FLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 +KQ K +L H K EK+ S + + F +V+HE RTPLT I+ + I+ + Sbjct: 779 YKQRKQRLEHELYLKQIEKDKSEEFNRELQTFFTQVAHEFRTPLTLILNPLDEIQKKIIH 838 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 G E I R+ +L +VNDL+D+ KIE+G L + ++ + E Q Sbjct: 839 VSGVK---EDLLLIRRNAKRLLTLVNDLMDLRKIENGNGELELSSFNFNDFIQEIYYSFQ 895 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE- 735 + A ++ I ++ S D +++++ N+LSNA+ FTP GG +I++ + E Sbjct: 896 VTARQRDIALQLSLPETPILATFDKDALEKVFFNLLSNALKFTPEGGTVILAVSLIEGEK 955 Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE--GTGLGLPLAKAMVDANMGKF 792 ++ + V+DTGVG++N ++ K KPF + Q + G+ G+G+GL +A+A+V+ + G Sbjct: 956 PKIHIEVKDTGVGISNEDINKIFKPFA--LSHQDLHGQMGGSGVGLTIARAIVEKHQGTI 1013 Query: 793 YIFSTPAKGTLIEIIFPL-YDTSH 815 + GT I P YD + Sbjct: 1014 SVRRREPHGTCFSIDLPWRYDKCY 1037 >gi|153800706|ref|ZP_01955292.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae MZO-3] gi|124123681|gb|EAY42424.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae MZO-3] Length = 857 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 88/319 (27%), Positives = 154/319 (48%), Gaps = 17/319 (5%) Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS------SCYSLTMH--DI 561 NH+L EIL L T+ K G + + + + S S+ DI Sbjct: 397 NHFLFEILERQLLPTITKAAQGDNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDI 456 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 + + + + A++ AE+ + +++FLA++SHE+RTPL ++G S+++K PL N Sbjct: 457 TTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT---PL-ND 512 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 E+ + SG +L ++ND+LD S++E GK + L E V + + NE Sbjct: 513 EQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNE 572 Query: 682 KRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EV 737 K + L+ S + +D + QI N+L+NAI FT G I + + ++ Sbjct: 573 KGLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGDPLAQL 631 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 +++V DTG+G+ +L +PF Q ++ G+GLGL + ++V+ G+ ++ S Sbjct: 632 VIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSE 691 Query: 798 PAKGTLIEIIFPLYDTSHP 816 GT EI P+ P Sbjct: 692 YGIGTRFEIQLPIELVERP 710 >gi|119896946|ref|YP_932159.1| putative two-component sensor histidine kinase [Azoarcus sp. BH72] gi|119669359|emb|CAL93272.1| putative two-component sensor histidine kinase protein [Azoarcus sp. BH72] Length = 1167 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 139/252 (55%), Gaps = 8/252 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L M +I ++ +L +A+++AE+ + KS ++ +SHE+RTPL +I+G+++++ Sbjct: 686 LLMQEIESHRRTDEQLQNARRVAEQANQAKSRYVTSISHELRTPLNSILGYAQILDGDEA 745 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P P + + I +SG +L ++ LDI++IESGK L P++ V + + + Sbjct: 746 IP---PHRRQAVSVIKKSGEHLLSLIEGTLDIARIESGKFALDMRPLAFPAFVHQLVGMF 802 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 + A +K + +P ++ AD + ++QI +NI+ NAI FTP G++ + T+ Sbjct: 803 EPQARDKGLDFVFETVGTLPEVVRADEKRLRQILINIIGNAIKFTPR-GRVGVKLTY-RR 860 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E ++ V D+G G+ EL++ +PF + S GTGLGL ++K + D G+ + Sbjct: 861 EMALIEVEDSGPGIAAGELQQIFEPFAR--GSSARTTTGTGLGLTISKMLTDLMGGELSV 918 Query: 795 FSTPAKGTLIEI 806 S P +G+ I Sbjct: 919 DSVPGEGSTFRI 930 >gi|46581020|ref|YP_011828.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46450441|gb|AAS97088.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|311234704|gb|ADP87558.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1] Length = 1000 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 82/267 (30%), Positives = 134/267 (50%), Gaps = 12/267 (4%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L D++ + L +KK AE ++ K++FLA +SHEIRTPL I+G +++ + Sbjct: 582 LAAVDVTVQSETMRALQRSKKAAESANAAKTEFLANMSHEIRTPLNGIMGMMQLLVST-- 639 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 PL + + +N I SG L +++D+LD+S+IE+G + L E V+ E + L Sbjct: 640 -PLDDEQKQYVSNAISSSGRLS-QLLSDVLDLSRIEAGGLVLRDECVTPSELLDAIKDLF 697 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS----TT 730 L ++ + + +P+ IL D ++QI N++ NA+ FT G I + Sbjct: 698 TLGTRSSQVELALEISPGLPQHILLDGGRLRQILFNLVGNALKFTEK-GHIHVRLDELAI 756 Query: 731 HTSNEEVIL-RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 H +++L V DTG+G+ + PF Q+ S R G GLGL + + +V A Sbjct: 757 HGGMRQLLLISVEDTGIGIPQGAMRDIFNPFYQVDGSHVRRQGGVGLGLSIVRRLVIAMG 816 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHP 816 G I S +GT I + P + T P Sbjct: 817 GALCIDSAEGEGTRIHLSLP-FRTCAP 842 >gi|78063729|ref|YP_373637.1| periplasmic sensor hybrid histidine kinase [Burkholderia sp. 383] gi|77971614|gb|ABB12993.1| periplasmic sensor hybrid histidine kinase [Burkholderia sp. 383] Length = 1032 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 132/262 (50%), Gaps = 14/262 (5%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + D++ +Q +L A + A+ ++ KS FLA ++HEIRTPL I+G E++ Sbjct: 493 VAVADVTARRQLVQQLEEAVRAADSANAAKSSFLAAITHEIRTPLNVILGNLELLDRSAL 552 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN---LHFEPVSLDEAVSEAI 672 + R + + + +L +V+D+LD SKIE+G M + F+ + + E A Sbjct: 553 DASQHGRV----QTLRAAASGLLGLVSDILDFSKIEAGAMTVEAIEFDVIGVIERTLGAF 608 Query: 673 SLVQLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII---IS 728 + V A K + + A++ R+ D + Q+ N+LSNAI FT SG ++ ++ Sbjct: 609 APV---AKAKGLSLFCEIDASDAQRMRGDPTRLGQVLGNLLSNAIKFTASGHVLVRVSVA 665 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + + E+ + V DTG+G+ + K K F Q+ S R GTGLGL L + A Sbjct: 666 SAGCGDAELSIAVEDTGIGIAGADRHKLFKAFSQVDASITRRYGGTGLGLALCDRLAAAM 725 Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810 G+ + S P G+ + PL Sbjct: 726 GGRIDVASVPGTGSRFTLTVPL 747 >gi|124007263|ref|ZP_01691971.1| PAS [Microscilla marina ATCC 23134] gi|123987293|gb|EAY27022.1| PAS [Microscilla marina ATCC 23134] Length = 1386 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 123/223 (55%), Gaps = 11/223 (4%) Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 +FLA +SHEIRTPL +IGF +++ N EY + +S + +LDI+ D+LD Sbjct: 885 EFLANMSHEIRTPLNGVIGFVDLLLETSL----NESQKEYLKTVHQSAHTLLDIITDILD 940 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705 SKIE+GKM + L +++ +S+V+ +K++ + ++++P+ I AD K Sbjct: 941 FSKIEAGKMEISITQTDLMHLINQVVSVVKYTVYQKKLELLLDLSDDLPQFIYADDVRFK 1000 Query: 706 QIALNILSNAIHFTPSGGQIIIST---THTSNEEVILR--VRDTGVGMTNYELEKAMKPF 760 QI N++SNA+ FT + G++++ + E I R V+DTGVG+ + K ++ F Sbjct: 1001 QILTNLMSNAVKFTEA-GEVVLKVELLKQLPDNEAIFRFSVKDTGVGIAPEKQSKVLEAF 1059 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 Q S + GTGLGL + ++ + + S P +G++ Sbjct: 1060 SQEDASTTRKFGGTGLGLTITNKLLKLMESRLKLKSVPGEGSI 1102 >gi|239817208|ref|YP_002946118.1| histidine kinase [Variovorax paradoxus S110] gi|239803785|gb|ACS20852.1| histidine kinase [Variovorax paradoxus S110] Length = 1211 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 124/232 (53%), Gaps = 23/232 (9%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS +++ +SHE+RTPL +I+G+++++ P P + I R G +L ++ Sbjct: 757 KSRYISAISHELRTPLNSILGYAQLMGEDHSVP---PHRQQAVAVIKRGGEHLLSLIEGT 813 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRS 703 L I+ IE+GK+ LH P+ + + E + +L A EK + R ++P ++ AD + Sbjct: 814 LAIAHIEAGKLTLHARPMRFADTLRELADMFELQAAEKGLRFRFETTGSLPEVVRADEKR 873 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 V QI +N+L NAI FT G++ + ++ + E + + DTG GMT ++E+ +PF Sbjct: 874 VCQILINLLGNAIKFTAV-GEVRLRLSY-AREFASVEIEDTGPGMTAEDIERIFEPF--- 928 Query: 764 PNSQQIRGE---------GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 RG+ G GLGL +AK + D G+ + STP +G+L + Sbjct: 929 -----TRGDAAAAAAATPGAGLGLTIAKMLTDLMGGEMKVRSTPGEGSLFCV 975 >gi|308094713|ref|ZP_05891407.2| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus AN-5034] gi|308095255|ref|ZP_05904423.2| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus Peru-466] gi|308125416|ref|ZP_05775166.2| response regulator receiver domain protein [Vibrio parahaemolyticus K5030] gi|308085373|gb|EFO35068.1| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus Peru-466] gi|308089610|gb|EFO39305.1| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus AN-5034] gi|308111067|gb|EFO48607.1| response regulator receiver domain protein [Vibrio parahaemolyticus K5030] Length = 1111 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 90/317 (28%), Positives = 150/317 (47%), Gaps = 18/317 (5%) Query: 508 VMNHYLTEILS---LDLRQTLEKITLGSTKEEKLLSLR---IIIKKLPFSSCYSLTMHDI 561 + +HYL+ ++ L L EK++ G E + R I + F I Sbjct: 353 IASHYLSNFITSPLLKLTWAAEKVSAGDLDETTFNTERKDEIGRLAISFERMQRSIREKI 412 Query: 562 SEWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 KQ+ +L K+ +K++ K +FLA SHE+RTPL ++G +E + + Sbjct: 413 QTIKQQNEELESNIKLIQKQNDELQLADKLKDEFLATTSHELRTPLHGMVGIAETLVSGA 472 Query: 615 FGPLGNPRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + P +Y + I +SG + ++V+DLLD K+ G M++ VSL A + Sbjct: 473 NGVI--PASQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLE 530 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 L K I I ++ + AD + ++Q+ N++ NAI +T S G+I+IS T Sbjct: 531 LSNHLLGNKTIRIINQVPADLKAVSADPQRLEQVLYNLIGNAIKYT-SEGKIVISAT-IV 588 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ V ++V DTG G+ LE +P Q +G GLGL +++ +++ G Y Sbjct: 589 DDHVRVQVVDTGQGIPAEHLEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLY 648 Query: 794 IFSTPAKGTLIEIIFPL 810 + S P GT PL Sbjct: 649 VSSQPMVGTTFSFTLPL 665 >gi|288922163|ref|ZP_06416364.1| histidine kinase [Frankia sp. EUN1f] gi|288346484|gb|EFC80812.1| histidine kinase [Frankia sp. EUN1f] Length = 391 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 127/229 (55%), Gaps = 8/229 (3%) Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 + A+ AE+ES K +F+AR+ HE+RTPL A++GF+++++ + PL P E I Sbjct: 111 ARARGAAERESRSKDEFVARLGHELRTPLNAMLGFAQLLELE---PL-TPDLHEDVERII 166 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 G + +++D+LD++++ +G+ +++ PV++ + V + LV+ A + IR Sbjct: 167 TGGRHMQALIDDVLDLARLRAGRGDINKGPVNVLDIVQGVVELVEPLAERRG--IRRVIQ 224 Query: 692 NNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 P I AD R + Q+ LN++ NA+ + GG + + + + + V D G G++ Sbjct: 225 PARPLIADADRRRLWQVLLNLIGNALKYGREGGSVRVGIVPVTGSRIRIEVEDDGFGLSP 284 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 L + +PF ++ ++ EG+GLGL L++A+V A G + S P Sbjct: 285 SALSRLFRPFERL-GAEDTGVEGSGLGLALSQALVTAMGGVLTVASRPG 332 >gi|159027054|emb|CAO89239.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 733 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 122/238 (51%), Gaps = 9/238 (3%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN----QRFGPLGNPRYIEYANYIDRS 633 AE + KS+FL +SHE+ TPLT IIG S ++ F P ++ Y I + Sbjct: 360 AEAANLCKSEFLNNMSHELLTPLTCIIGLSSTLQKCSAASNFLPPDKQKH--YLQVIQDN 417 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI--LIRTSFA 691 GN +L+++NDLL+ S++ +GK L + SL + + +++ A K I ++ Sbjct: 418 GNKLLELINDLLNFSQVSAGKAVLDIKQFSLKYLCNHVLEIIKTEAEIKEINLILEMKIT 477 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 AD V+QI L +L NA+ FTP G I + ++ VI +V DTG+G+ Sbjct: 478 EKEHYFYADYDRVQQILLYLLKNALKFTPEQGAITLRLWKEGSQ-VIFQVEDTGIGIPAQ 536 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ + F Q+ S++ R G GLGL L K +V+ + G + S KG++ + P Sbjct: 537 KIPLLFEKFTQLDGSRKRRYGGMGLGLALTKQLVELHRGTIEVESCLDKGSIFTVRLP 594 >gi|42522578|ref|NP_967958.1| phosphate regulon sensor protein phoR [Bdellovibrio bacteriovorus HD100] gi|39575110|emb|CAE78951.1| Phosphate regulon sensor protein phoR [Bdellovibrio bacteriovorus HD100] Length = 477 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 80/257 (31%), Positives = 138/257 (53%), Gaps = 25/257 (9%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK-NQRFG 616 HDI+E K+ A++I + DF+ SHE+RTPLT+I G+ + +K + + G Sbjct: 240 FHDITEMKR-------AEQI-------RMDFVGNASHELRTPLTSIKGYVDTLKEDVKTG 285 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE---PVSLDEAVSEAIS 673 + ++ + + R+ + ++D+VND+L I+ +E+ L E P+++ E V +S Sbjct: 286 QIQQAG--KFLDIVSRNIDRLMDLVNDMLSINTLEASNSELKLEMIHPLAISEHV---VS 340 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + + A EK I IR + ++P LAD R V+Q+ N++SNA+ + PSG I I Sbjct: 341 ELAVMAAEKNITIRVN--GDVPPFLADARKVEQVLRNLVSNAVKYIPSGKTIQIRWERDI 398 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E +ILRV D G G+ L++ + F +I + GTGLGL + K ++ ++ G Sbjct: 399 KEYIILRVIDDGQGIPEQHLDRLFERFYRIDKGRTRDAGGTGLGLAIVKHIMQSHGGTVA 458 Query: 794 IFSTPAKGTLIEIIFPL 810 + S +G+ FP+ Sbjct: 459 VKSIVDQGSEFICSFPI 475 >gi|109898859|ref|YP_662114.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] gi|109701140|gb|ABG41060.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] Length = 572 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 132/249 (53%), Gaps = 13/249 (5%) Query: 563 EWKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E ++E++ L H K+ A+ + KS FLA +SHEIRTP+ +IG E++ + + Sbjct: 175 ELERERDIALKHEKE-AKAATEAKSAFLANMSHEIRTPMNGVIGMIELVSQTKLEKVQQ- 232 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 +Y RS + ++ I+ND+LD SKIE G++ + +++ +E + Q A+E Sbjct: 233 ---DYIATAKRSADSLMVIINDILDFSKIEVGELTIELVEFDVEQFFAELLHDQQFQASE 289 Query: 682 KRI---LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS-NEE 736 K + LI+ + +++ D ++QI N+LSNAI FT SG Q+ S T +S N E Sbjct: 290 KGLKLSLIKEELQHT--KVVGDPYRIRQIVNNLLSNAIKFTQSGHIQVRYSLTSSSDNLE 347 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + V DTG+G++N L F Q S + GTGLGL + K + + G + S Sbjct: 348 LHCAVTDTGIGVSNEALPYLFDSFSQADTSTTRKFGGTGLGLSITKQLCNLMGGDIKVQS 407 Query: 797 TPAKGTLIE 805 KG+ E Sbjct: 408 QLGKGSTFE 416 >gi|71016304|ref|XP_758886.1| hypothetical protein UM02739.1 [Ustilago maydis 521] gi|46098317|gb|EAK83550.1| hypothetical protein UM02739.1 [Ustilago maydis 521] Length = 1356 Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 128/239 (53%), Gaps = 10/239 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 K + A++ AE + KS+FLA +SHEIRTP+ IIG + + + + Sbjct: 838 KNTAAREAAELANRSKSEFLANMSHEIRTPMNGIIGMTALTLETELSRSQRENLVTVSTL 897 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 +GNL L I++D+LDISKIE+G+MN+ P SL V + + + A +K++ + Sbjct: 898 ---AGNL-LAIIDDILDISKIEAGRMNVEEIPFSLRGIVFSVLKTLSVRATQKKLNLMYE 953 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII----ISTTHTSNEEVI-LRVRD 743 A + P ++ D +KQI N++ NA+ FT +GG++ +S SN+ ++ D Sbjct: 954 VAPDCPDPLIGDALRLKQIITNLIGNAVKFTDAGGRVALKCKLSKMVGSNQAMLEFCASD 1013 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+G+ +L+ F Q S + GTGLGL +++ +V+ G ++ S KG+ Sbjct: 1014 SGIGIKQDKLDVIFDTFCQADGSTTRKYGGTGLGLSISRRLVNLMGGDLWVRSNYGKGS 1072 >gi|292491506|ref|YP_003526945.1| diguanylate cyclase [Nitrosococcus halophilus Nc4] gi|291580101|gb|ADE14558.1| diguanylate cyclase [Nitrosococcus halophilus Nc4] Length = 1499 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/258 (29%), Positives = 131/258 (50%), Gaps = 10/258 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 TM + E ++++ L A+ A + + K +F A VSHE+RTPL ++G E+++N Sbjct: 247 TMMTVLEAREQE--LKRARDAALESARIKGEFAANVSHELRTPLNGVLGMLELLRNMGL- 303 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P+ EY SG +L+++ ++LD S+IESG+ L L E + +AI L+ Sbjct: 304 ---TPKQREYVQVACNSGETLLELIGNILDFSRIESGRFKLDPADFYLQEILDDAIGLLA 360 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 A K + + A N+P L D ++QI +N++ NA+ FT G + + + Sbjct: 361 GQAQRKDLDLGYVVAKNVPPSLRGDATRIRQILINLMGNAVKFTEQGEVSVEVQLLEKTA 420 Query: 735 EEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++++L V+DTG+G+ + + F Q +S + GTGLGL + + +VD G Sbjct: 421 KKLVLLFEVKDTGIGIPIEFQKHIFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGGDI 480 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S G+ PL Sbjct: 481 GVESKFGGGSRFWFTVPL 498 >gi|283853104|ref|ZP_06370359.1| histidine kinase [Desulfovibrio sp. FW1012B] gi|283571502|gb|EFC19507.1| histidine kinase [Desulfovibrio sp. FW1012B] Length = 404 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 101/387 (26%), Positives = 184/387 (47%), Gaps = 34/387 (8%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 +D + + ++R+ EI +IL+ +D + ++ + ILS N + F P + + Sbjct: 34 KDANAQSSQRRREI-----AAILDGITDIMMVLAPDLRILSVNHVFRQTFPQPAPE-GQF 87 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDL-RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554 + +F Q+TP + D+ R+T G + ++++ I P S Sbjct: 88 CYKIFRNQDTPCPECPASKSFATGDICRETAIFKIGGKNIQYEMVASPIRHPDDPESHIL 147 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR-VSHEIRTPLTAIIGFSEVIKNQ 613 D++ K+ + K A+K+A LA V+HE+ PLTAI GF+E ++ + Sbjct: 148 VFK-RDVTREKEYQAKFYQAEKMA------TIGMLATGVAHEVNNPLTAIFGFAEGLR-R 199 Query: 614 RFGPLG---NPRYIE----YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 R L +P +E Y + I DIV LL S+ ++ + F PVSL+ Sbjct: 200 RLPALREKVDPGVMEDVEDYVSTILLECRRCQDIVTTLLTFSRHKT----VSFSPVSLNA 255 Query: 667 AVSEAISLVQLY---ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 V + + L++ + N+ +I +R ++P++L D +KQ+ LN+L NA+ G Sbjct: 256 VVEDTLKLLRSHLKQRNQAKITVRVDLCESLPKVLGDEHQIKQVMLNLLVNAMDAIAGPG 315 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 +I+I+T + E V L V D+G G+ ++K +PF + G+G G+GL + Sbjct: 316 RIVITTFQSVPESVCLSVEDSGYGIRAEHMDKLFEPFFTTKRA----GKGIGIGLSTCMS 371 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL 810 +V + G + S P +G + + FP+ Sbjct: 372 IVQKHHGDITVKSQPGQGAVFTVKFPV 398 >gi|114566484|ref|YP_753638.1| sensory box histidine kinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337419|gb|ABI68267.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 346 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 98/362 (27%), Positives = 171/362 (47%), Gaps = 25/362 (6%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E +MQ SIL DG+ ++N +G I+ N+A LF +L K T E S Sbjct: 6 EKRMMQ--SILSCMVDGVLVLNIDGCIIQANKAAESLFLVREGVLLGKRLTQISENREIS 63 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567 M + E+L+ T E I L F +++ D E + Sbjct: 64 DM---IDEVLT--------------TGNESFTETTISPSTLVFR-VHAVPRKDHHERIEG 105 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-Y 626 + H A +S F+ VSHE+RTPLT+I GF E + + G + N + Sbjct: 106 AIVVFHDVTDARNFDQIRSAFVGNVSHELRTPLTSIKGFVETLLD---GAMENSDTCRRF 162 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + ID N + ++ DLL +S IES + ++ +P L ++ +++ +EK + + Sbjct: 163 LSIIDTETNRLTRLIEDLLTLSSIESQERIVYLKPACLLRSIRNVMNMFGPQISEKSLHV 222 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 +P I AD + Q+ +N+L NAI +TP G+I+I + +I V+D+G+ Sbjct: 223 EFIHPYPMPLIQADEDLLGQVFINLLDNAIKYTPRQGKIVIQ-CQRRDSRIITTVKDSGM 281 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ + L + + F ++ ++ + GTGLGL + K +V+++ G+ ++ S KG+ + Sbjct: 282 GIPHESLPRVFERFYRVDKARSRQQGGTGLGLSIVKHIVESHGGEVFVDSEIGKGSTFGV 341 Query: 807 IF 808 F Sbjct: 342 SF 343 >gi|224539126|ref|ZP_03679665.1| hypothetical protein BACCELL_04028 [Bacteroides cellulosilyticus DSM 14838] gi|224519257|gb|EEF88362.1| hypothetical protein BACCELL_04028 [Bacteroides cellulosilyticus DSM 14838] Length = 774 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 77/253 (30%), Positives = 136/253 (53%), Gaps = 16/253 (6%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E K + +L AK+ AE+ + KS FLA +SHEIRTPL AIIGFS ++ Sbjct: 531 ITERKIAERELIAAKERAEESNRLKSAFLANISHEIRTPLNAIIGFSSILAMTE----DE 586 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 EY + I+++ ++L ++ND+LD+SKIE+G ++L++ L+ ++ +V+ Sbjct: 587 EEKKEYVSIIEKNNGILLQLINDVLDLSKIEAGVLDLYYSEFGLNGVLATLKGVVESRLQ 646 Query: 681 EKRILIRTSFANNIPR---ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 ++ LI F +P + ++ ++Q+ LN L+NA FT +G I ++++ Sbjct: 647 DRVDLI---FEPGMPDDYVVYSEKNRLQQLVLNFLTNACKFTSTGS--IRYGYEVRDKDI 701 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V DTG G+ +L + F ++ + +Q GTGLGLP+ + ++ G+ + S Sbjct: 702 YYYVTDTGTGIPEDKLHLIFERFIKLDSFKQ----GTGLGLPICQLIIQNMGGEIGVNSK 757 Query: 798 PAKGTLIEIIFPL 810 +G+ PL Sbjct: 758 LGEGSTFWFTLPL 770 >gi|331016310|gb|EGH96366.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 1195 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 127/262 (48%), Gaps = 8/262 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K + +L A ++A + + KS FLA +SHEIRTP+ AIIG E+ Q Sbjct: 674 DITERKLLEQQLEQAVRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLELECEQALRRGE 733 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P + RS ++ ++ + LD+++IE+G M L L ++L A Sbjct: 734 AP--TQGLQVAHRSATELVALIGESLDLARIEAGGMQLSLVVTPLQTFFEGVLALFSAQA 791 Query: 680 NEKRILIRTSFANNI--PRILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSN 734 EK + +R A L LR ++Q+ N+L NA+ FT G ++ +S Sbjct: 792 REKGLELRLELAEQARGDYWLDPLR-LRQVVHNVLGNALKFTRQGAVVVKVEVSDDPPDA 850 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V + + D+GVG+ ++ +PF Q + R G+GLGL + + +V+ G + Sbjct: 851 SRVRIGIMDSGVGIEPARQQQIFQPFTQAADDTAARYGGSGLGLSITRQLVELMKGDISL 910 Query: 795 FSTPAKGTLIEIIFPLYDTSHP 816 S P KGT + + PL + P Sbjct: 911 HSEPGKGTRVTVDVPLARVTEP 932 >gi|313499882|gb|ADR61248.1| Histidine kinase [Pseudomonas putida BIRD-1] Length = 935 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 128/255 (50%), Gaps = 9/255 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS KQ + L A++ A+ + K+ FLA +SHEIRTPL ++G E++ Sbjct: 434 DISARKQIEAALEDARRAADTANEAKTQFLATMSHEIRTPLYGVLGTLELLSRTVL---- 489 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + +Y I+ S + +L ++ D+LD+SKIE+G++ L S + V E + A Sbjct: 490 DAQQRDYLRAIEGSSSTLLQLICDVLDVSKIEAGQLALELSEFSAPDLVREVVQGYSAAA 549 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 K + + + +P ++ D+ ++QI N+LSNA+ FT G ++ + + E Sbjct: 550 RSKGLQLYSCLDPRLPEHLIGDVNRIRQILNNLLSNAVKFTDCGRVVLRARLLNRDGERS 609 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++ +V DTG G+ + PF Q Q+ GTGLGLP+ + + G+ + Sbjct: 610 CLLWQVSDTGKGIAEQDQPFIFDPFYQTEGHSQVI-PGTGLGLPICQRLTQLMNGQLRLV 668 Query: 796 STPAKGTLIEIIFPL 810 S G+ + PL Sbjct: 669 SELGLGSSFSLTLPL 683 >gi|308126687|ref|ZP_05911833.2| response regulator receiver domain protein [Vibrio parahaemolyticus AQ4037] gi|308106582|gb|EFO44122.1| response regulator receiver domain protein [Vibrio parahaemolyticus AQ4037] Length = 1111 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 90/317 (28%), Positives = 150/317 (47%), Gaps = 18/317 (5%) Query: 508 VMNHYLTEILS---LDLRQTLEKITLGSTKEEKLLSLR---IIIKKLPFSSCYSLTMHDI 561 + +HYL+ ++ L L EK++ G E + R I + F I Sbjct: 353 IASHYLSNFITSPLLKLTWAAEKVSAGDLDETTFNTERKDEIGRLAISFERMQRSIREKI 412 Query: 562 SEWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 KQ+ +L K+ +K++ K +FLA SHE+RTPL ++G +E + + Sbjct: 413 QTIKQQNEELESNIKLIQKQNDELQLADKLKDEFLATTSHELRTPLHGMVGIAETLVSGA 472 Query: 615 FGPLGNPRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + P +Y + I +SG + ++V+DLLD K+ G M++ VSL A + Sbjct: 473 NGVI--PASQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLE 530 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 L K I I ++ + AD + ++Q+ N++ NAI +T S G+I+IS T Sbjct: 531 LSNHLLGNKTIRIINQVPADLKAVSADPQRLEQVLYNLIGNAIKYT-SEGKIVISAT-IV 588 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ V ++V DTG G+ LE +P Q +G GLGL +++ +++ G Y Sbjct: 589 DDHVRVQVVDTGQGIPAEHLEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLY 648 Query: 794 IFSTPAKGTLIEIIFPL 810 + S P GT PL Sbjct: 649 VSSQPMVGTTFSFTLPL 665 >gi|121296536|gb|ABM53768.1| hybrid two-component regulatory protein [Stenotrophomonas maltophilia] Length = 702 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/248 (33%), Positives = 128/248 (51%), Gaps = 13/248 (5%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L+HA A + S KS FLA +SHE RTPL + G +EV+ + E N Sbjct: 153 RQLTHAMDEARRASEAKSRFLANMSHEFRTPLNGLSGMTEVLATTTL----DEEQRECVN 208 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL-YANEKRILIR 687 I S +L +V ++LDIS IE+GK+ + E SLD+ V ++I L+ + A K + + Sbjct: 209 TIQASSRSLLALVEEVLDISAIEAGKLRVVAEDFSLDDVV-QSIGLILMPQARLKHLDYQ 267 Query: 688 TSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILR--V 741 A +PR+L DL ++QI LN+ NA+ FT G+I I + E +V LR + Sbjct: 268 VKVAAGVPRLLRGDLGHLRQILLNLAGNAVKFTEH-GRIEIRVSQVGEEGHGQVRLRFDI 326 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ + + F Q S R EG+GLG +++ +V+A G+ P +G Sbjct: 327 LDTGIGVGPEMRSRLFQAFEQADVSLGRRHEGSGLGTSISRGLVEAMGGRIGYAENPPQG 386 Query: 802 TLIEIIFP 809 + P Sbjct: 387 SCFWFELP 394 >gi|121605276|ref|YP_982605.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans CJ2] gi|120594245|gb|ABM37684.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans CJ2] Length = 1124 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 125/243 (51%), Gaps = 14/243 (5%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A+++AE+ K+ FLA +SHEIRTPL ++G S ++ + + I Sbjct: 454 LVRARQVAEEAVRAKAAFLATMSHEIRTPLNGVVGMSTLLAETAL----DAEQRDILQTI 509 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-----L 685 S + +L +++D+LD SKIESG+ +L EPVS+ + EA + A EK I + Sbjct: 510 RLSSDQLLAVISDILDFSKIESGRFDLESEPVSVHNMIEEACDIAAPRAREKGIELIVDV 569 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILR 740 + P IL D+ ++QI +N+++NA+ FT G + S + +E + Sbjct: 570 PGAAAGGPPPAILGDVTRLRQILINLVNNAVKFTEHGAVSVHSRLAEAPDEQGLALIEFS 629 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+G+ + + F Q+ S + GTGLGL + K +V+ GK + S K Sbjct: 630 VHDTGIGIPPERVGALFEAFMQVDASTTRKYGGTGLGLAICKRLVELMGGKISVTSKLGK 689 Query: 801 GTL 803 G++ Sbjct: 690 GSI 692 >gi|182414033|ref|YP_001819099.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177841247|gb|ACB75499.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 812 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 81/250 (32%), Positives = 135/250 (54%), Gaps = 14/250 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++ K+ + +L AK AE + KS+FLA +SHEIRTP+ +IG + ++ + + Sbjct: 258 DVTALKRTEQQLQAAKLAAEAAARAKSEFLANMSHEIRTPMNGVIGMTGLLLDTKL---- 313 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD--EAVSEAISLVQL 677 +P ++A + S ++ ++ND+LD SKIE+GK L FE + D E + + ++ Sbjct: 314 DPEQRQFAESVRNSAENLMTVINDILDFSKIEAGK--LLFEELDFDLVETIEGTLDMLAE 371 Query: 678 YANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTT---HTS 733 A K I + A +PR L D ++QI N+L NAI FT G++++STT T+ Sbjct: 372 RAQGKGIELIDGIAPQVPRYLRGDPGRLRQILTNLLGNAIKFTEH-GEVVLSTTLERETA 430 Query: 734 NEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++ V DTG+G++ + + F Q +S R GTGLGL ++K +V G+ Sbjct: 431 THAIVRFDVTDTGIGISRDVQARLFQSFEQADSSTTRRYGGTGLGLAISKQLVAMMHGEI 490 Query: 793 YIFSTPAKGT 802 + S G+ Sbjct: 491 GVQSEAGVGS 500 >gi|21673490|ref|NP_661555.1| sensor histidine kinase [Chlorobium tepidum TLS] gi|21646596|gb|AAM71897.1| sensor histidine kinase [Chlorobium tepidum TLS] Length = 399 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 91/369 (24%), Positives = 172/369 (46%), Gaps = 42/369 (11%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLF--------GYPV---EDILRKPFTVFLE 502 L +L + + I + N G I+ N A S+LF PV ED + ++ Sbjct: 58 LREVLSSIREAIIVTNASGEIVLANPAASRLFMIEAARKRSIPVTNIEDAAMRELFERVQ 117 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562 + + N LT + S ++TL K+ ++ ++ + F L ++D++ Sbjct: 118 KRQSGIYNEELTAMTSKG-KRTL-----------KVTAVPVMRRGALFDGTV-LVINDVT 164 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + + + DF++ VSHE+RTPL +I G++E + G + +P Sbjct: 165 RLRNLERT--------------RRDFVSSVSHELRTPLASIKGYTETLLE---GAMNDPE 207 Query: 623 -YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + N I + + +VND+LD+S+IESGK+ FEPV + + + +L + A Sbjct: 208 NATAFLNIIHQEAEQLTALVNDVLDLSRIESGKIAYSFEPVDVKPQLEKTAALFEPAAAR 267 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 K + I + +P +LAD + N++ NAI + + + + + + + V + V Sbjct: 268 KGVRIELNAPEGLPAVLADRSYFDIVVRNLIDNAIKYVDAESGRVRVSAYATGDSVSIEV 327 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D G+G+ +L++ + F ++ ++ GTGLGL + K +V A+ GK + S +G Sbjct: 328 ADNGIGIPQADLDRIFERFYRVDKARSRELGGTGLGLSIVKHIVLAHKGKVEVRSRINRG 387 Query: 802 TLIEIIFPL 810 T + P+ Sbjct: 388 TTFTVTLPV 396 >gi|330810837|ref|YP_004355299.1| histidine kinase, Unorthodox [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378945|gb|AEA70295.1| putative Histidine kinase, Unorthodox [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 1066 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 131/243 (53%), Gaps = 10/243 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK+ A+ + K+ F+A +SHEIRTP+ A+IG E+ + + + IE A+ Sbjct: 565 QLRVAKESADDANRAKTTFVATMSHEIRTPMNAVIGLLELALKKADQGVVDRFAIEVASG 624 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + + +LD++ D+LDI++IESGK++L + +L E + + A +K + ++ Sbjct: 625 ---AAHGMLDLIGDILDIARIESGKLSLAPQRANLHELTESVARIFEGLARQKHLRLQRV 681 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRD 743 + R +L D KQI N+LSNAI FT G ++ +S + + E + LRV D Sbjct: 682 LDAGVNRDVLIDPLRFKQIVSNLLSNAIKFTDQG-EVRLSVSGEPDVEHGRLGICLRVED 740 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG G++ + + PF Q ++ Q G+GLGL +++ + + G + S GT Sbjct: 741 TGCGISPEDQRRLFSPFTQATHTTQSARSGSGLGLVISRTLCEMMGGTLTLRSAAGAGTQ 800 Query: 804 IEI 806 +EI Sbjct: 801 VEI 803 >gi|229114838|ref|ZP_04244251.1| hypothetical protein bcere0017_11350 [Bacillus cereus Rock1-3] gi|228668530|gb|EEL23959.1| hypothetical protein bcere0017_11350 [Bacillus cereus Rock1-3] Length = 466 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/264 (29%), Positives = 140/264 (53%), Gaps = 9/264 (3%) Query: 550 FSSCYSLTMHD-ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 FS +++ D I + NK++H+ E E + +FLA VSHE+RTPL+ I G+SE Sbjct: 206 FSERITISSEDEIGRLGKAFNKMAHS---LETEDVKRKEFLANVSHELRTPLSYIKGYSE 262 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 I + G P+ + I + + + +V+DLLD++++E L +P+ + + Sbjct: 263 AILD---GVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLI 319 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 + + +L EK++ I T+ I ++ D ++Q+ N+L NAI +T G III Sbjct: 320 EDVLDTYELKFIEKKLRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGNIII- 377 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 T ++ L+++DTG+G+ LE + F ++ ++ + GTGLGL + + +V + Sbjct: 378 TLEQIDDYCELKIKDTGIGIDAEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIH 437 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYD 812 G++ I S KGT + I + D Sbjct: 438 DGEWKIESEKGKGTTVFIKLKIQD 461 >gi|152993425|ref|YP_001359146.1| hypothetical protein SUN_1842 [Sulfurovum sp. NBC37-1] gi|151425286|dbj|BAF72789.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 1046 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 124/230 (53%), Gaps = 10/230 (4%) Query: 580 KESSHKSD-FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 +E++ D FLA +SHEIRTPL I+GF++++K+ P E+ I+ S + +L Sbjct: 374 QEANEAKDLFLANMSHEIRTPLNGIVGFTQLLKSTN----PTPDQEEFITVIENSSDNLL 429 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-I 697 IVND+LD+SKI++ K+ L P + E AI A EK I + +P + Sbjct: 430 AIVNDILDLSKIKADKIELESIPFNAIEKFESAIESYGARAAEKDIELGVFIDPGLPTPL 489 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQI--IISTTHTSNEEVILR--VRDTGVGMTNYEL 753 + D + QI +N++SNAI FT + G I I + + E V ++ VRDTG+G+T + Sbjct: 490 IGDPTKISQIIVNLISNAIKFTSTHGSIDVRIEKMNETEENVTMKFSVRDTGIGITEEQK 549 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +K PF Q S + GTGLGL ++ + G+ I S +G++ Sbjct: 550 DKIFDPFSQADVSTSRKYGGTGLGLAISVKLTAFMGGELDIESEEGEGSV 599 >gi|294507245|ref|YP_003571303.1| protein containing histidine kinase domain [Salinibacter ruber M8] gi|294343573|emb|CBH24351.1| protein containing histidine kinase domain [Salinibacter ruber M8] Length = 746 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 125/251 (49%), Gaps = 8/251 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP--- 621 + K + A+ A + S KS FLA +SHEIRTPLT+IIGF++ I + P Sbjct: 480 RSAKEQAERARARAVEASKAKSAFLANMSHEIRTPLTSIIGFADAIGEEIQSLKDCPDEA 539 Query: 622 ---RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + ++ + + G +LD ++ +L++SK+ESG++ L E V L E + ++ Sbjct: 540 NLVQLDRFSELVGQGGKRLLDTLDAVLNLSKLESGQIELAEEAVDLVEKTRQVAEELRPS 599 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A EK + + + AD V+ + N+LSN I +T GG + H + E+ + Sbjct: 600 AQEKDLRLDLQMGADEILARADEGGVQIVLQNLLSNGIKYTEEGG--VQVRVHRTAEDAV 657 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 L V D+G+GM E +PF Q + EG+G+GL + K V+ G+ + + Sbjct: 658 LEVEDSGIGMEPERAEALFEPFRQASEGLSRKFEGSGVGLAVTKKAVEQMDGRVDVETEK 717 Query: 799 AKGTLIEIIFP 809 KG+ + P Sbjct: 718 GKGSRFVVRLP 728 >gi|326202730|ref|ZP_08192598.1| integral membrane sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] gi|325987314|gb|EGD48142.1| integral membrane sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] Length = 463 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 120/224 (53%), Gaps = 9/224 (4%) Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA-NYIDRSGNLVL 638 K K+DF++ VSHE+RTPLTAI G+ E I G + IE I R + + Sbjct: 239 KAEETKNDFISSVSHELRTPLTAIKGWGETIIT---GSFEDKEEIEKGLKVILRETDRLK 295 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++V++LLD SK+E K+ L+ E + E + E + L A ++RI +++ F NIP Sbjct: 296 NMVDELLDFSKLEGNKLVLNMEKTDIKEEIEEILRLYDGRAKKERISLQSKFTENIPEFS 355 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 D KQ+ +NIL NA+ F+P I+I+ + N E+I+ + D G G+ +L K Sbjct: 356 VDRNRFKQVIINILDNAMKFSPKDSNILINVSTLEN-ELIIEIIDNGYGIAKEDLPKIKD 414 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 F + NS++ G+G+GL + ++ + G + S KGT Sbjct: 415 KFFK-GNSKK---SGSGIGLAVCDKIIKLHGGSLELKSELNKGT 454 >gi|304392331|ref|ZP_07374272.1| two-component sensor/response regulator hybrid [Ahrensia sp. R2A130] gi|303295435|gb|EFL89794.1| two-component sensor/response regulator hybrid [Ahrensia sp. R2A130] Length = 708 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 138/255 (54%), Gaps = 6/255 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ K +++L+ A A+ S KS FLA +SHE+RTPL ++G ++++ PL Sbjct: 216 DITARKNHEHELAAAAAAAQAASEAKSRFLATISHEVRTPLNGVMGVAQLLART---PL- 271 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + ++ + + SG+ +L ++ DLLD +++E G +++ EPV L++ + +++ A Sbjct: 272 DATQRDHLSILKTSGDTLLALIEDLLDTARMEQGDLSIQTEPVKLEQLLEGVAAMMASRA 331 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K + I T +P ILAD ++Q+ +N+L NA+ FT G + + H S +E+ Sbjct: 332 AAKSLPISTYIDPTLPASILADGGRLRQVLVNLLGNALKFTDQGSVSLCAHRH-SIDELC 390 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 L V DTG G+ + + ++ +PF Q + G GLGL +++ +V G + + Sbjct: 391 LVVSDTGPGIADKDRDRIFQPFVQTDDGSTRAHNGAGLGLAISRHIVVRMGGDISVSTGK 450 Query: 799 AKGTLIEIIFPLYDT 813 G++ + PL + Sbjct: 451 DSGSVFTVTLPLVNA 465 >gi|167624483|ref|YP_001674777.1| histidine kinase [Shewanella halifaxensis HAW-EB4] gi|167354505|gb|ABZ77118.1| histidine kinase [Shewanella halifaxensis HAW-EB4] Length = 579 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 81/247 (32%), Positives = 131/247 (53%), Gaps = 20/247 (8%) Query: 574 AKKIAEK---ESSHKS--DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 A+ I EK ESS +S DF+A ++HE+RTPL ++G +E++ + + P + N Sbjct: 202 ARTIEEKQRAESSERSTRDFVAMINHELRTPLNGLLGSAELMSDTQL----TPHQRQLLN 257 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + +SG L+ I+NDLLD+SK+ +G + + V + + + +++ ++ Sbjct: 258 TMHQSGELLRVIINDLLDLSKMSAGMLQI----VEISFSPRQVCTMIYDIFKQRTAEFGL 313 Query: 689 SFANN----IP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 SFA N +P R+L D +KQ+ +N++ N+I FT SG QI + + + V D Sbjct: 314 SFAFNYHTEVPERLLGDPDRIKQLFVNLIGNSIKFTQSG-QITVDI-EWQDGQFCFSVTD 371 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG G+ +++ PF Q+ NS EGTGLGL + K +VD G + S KGT Sbjct: 372 TGCGIPADKVDTLFDPFTQVNNSSNRVYEGTGLGLAICKHLVDEMHGDLTLTSELDKGTQ 431 Query: 804 IEIIFPL 810 I PL Sbjct: 432 FNIRLPL 438 >gi|161521237|ref|YP_001584664.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans ATCC 17616] gi|189352590|ref|YP_001948217.1| putative and unique signal transduction histidine kinase [Burkholderia multivorans ATCC 17616] gi|160345287|gb|ABX18372.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans ATCC 17616] gi|189336612|dbj|BAG45681.1| putative and unique signal transduction histidine kinase [Burkholderia multivorans ATCC 17616] Length = 526 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/270 (30%), Positives = 139/270 (51%), Gaps = 15/270 (5%) Query: 560 DISEWKQ---EKNKLSHAKKI----AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 DIS K+ E++ L +++I A+ S K F+A VSHE+R P TAI+G+++++ + Sbjct: 132 DISAQKRLERERDALIESERIQRFAAQSASESKDAFIAAVSHELRAPSTAILGWADMLGD 191 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLD-IVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + + + R L L +V+DLLD S++ GK + PVS+ E ++ A Sbjct: 192 A----ADDAAVVREGVAVIRRNILALTRLVDDLLDASRLGQGKFAIESAPVSIAECLNAA 247 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + V A K + I A++ + D ++Q+ N+L NA+ TPSGG+I+ S Sbjct: 248 LQDVAPIAETKGVRIAEPGADD-GLVSGDAARLEQVFRNLLDNALKHTPSGGEIVPSLV- 305 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + V +R+ DTG G+ LE+ +PF QI + + G GLGL +A+++V + G+ Sbjct: 306 VGPDTVQVRIADTGAGIPADRLERIFEPFLQIRHPLHAQAGGLGLGLSIARSIVVMHRGE 365 Query: 792 FYIFSTP-AKGTLIEIIFPLYDTSHPHDCI 820 +S KG + P + P + I Sbjct: 366 ITAYSDGLGKGATFTVTLPRLAQARPRERI 395 >gi|291545377|emb|CBL18485.1| Signal transduction histidine kinase [Ruminococcus sp. SR1/5] Length = 799 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 131/253 (51%), Gaps = 13/253 (5%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + L A + AE + K++FL+ +SH+IRTP+ AI+G + + R IE Sbjct: 540 ESRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMNAIVGLTAIAGA---NVESQDRVIE 596 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I S +L ++N++LD+++IE GKM L E +L E V I+L + +E + Sbjct: 597 CLGKITESSRHLLGLINEVLDMARIERGKMTLAQEDFNLSELVDNLITLTKPVLDEHKHN 656 Query: 686 IRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---- 739 N+I + D ++Q+ +N++SNAI +TP GG I S N L Sbjct: 657 FDIHI-NHIEHEAVCGDSLRIQQVFVNLMSNAIKYTPDGGNTIFSIEEKPNGFSELGCYE 715 Query: 740 -RVRDTGVGMTNYELEKAM-KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + D G+GM+ E +K M +PF + + + R +GTGLG+ +++ +V+ G + ST Sbjct: 716 FTIEDNGIGMSP-EFQKIMFEPFSRADDHRTTRVQGTGLGMAISRNIVNLMNGTIKVDST 774 Query: 798 PAKGTLIEIIFPL 810 KGT I + L Sbjct: 775 LHKGTKITVTIYL 787 >gi|172035572|ref|YP_001802073.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171697026|gb|ACB50007.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 908 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/255 (30%), Positives = 134/255 (52%), Gaps = 15/255 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D+ + +++ + ++K E+ S KS+FLA + HEIRTPL A+ G + ++ + Sbjct: 239 QDLQDLQRKMAQQQASEKALEELSRAKSEFLAMIGHEIRTPLNAVTGMTGLLLDTEL--- 295 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N + E+ + I SG +L ++N++LD SKIE+ K+ L E L + + + L Sbjct: 296 -NDQQQEFVSIIRNSGENLLTMINNILDFSKIEAQKLELEEEAFELGPCIEDILRLFVSQ 354 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII------ISTTH 731 A++K + + +N P I+ D +KQI N++ NA+ FT +G +I I +T Sbjct: 355 ASKKNLELAYLVESNTPSAIVGDSTRLKQILANLIGNAVKFTDNGEVVIYVNGTPIKSTE 414 Query: 732 TSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 E E+ V+DTG+G+ + +PF Q+ S R GTGLGL ++K + + Sbjct: 415 NEQENPTYELRFAVKDTGIGIPPDRCHRLFQPFSQVDASTTRRYGGTGLGLAISKRLSEL 474 Query: 788 NMGKFYIFSTPAKGT 802 G ++ ST KG+ Sbjct: 475 MGGGMWVHSTEGKGS 489 >gi|20808059|ref|NP_623230.1| sensory transduction histidine kinase [Thermoanaerobacter tengcongensis MB4] gi|20516640|gb|AAM24834.1| Sensory transduction histidine kinases [Thermoanaerobacter tengcongensis MB4] Length = 456 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 100/372 (26%), Positives = 187/372 (50%), Gaps = 42/372 (11%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHY 512 L +IL++ ++G+ + IL N + K+ G +D+ R+ F V + + Sbjct: 114 LEAILKSIANGVIAFDNAERILMMNDSAKKILGIEEKDLTGRRVFEV--------IRSSK 165 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKL----LSLRIIIKKL--PFSSC---YSLTMHDISE 563 L E+ +TL K + S+K +L L++ I + P S + L + DI+E Sbjct: 166 LYEVF-----ETLRKNKVLSSKSLELNFFNKHLKVYISPILHPVSHVNLGFVLVIDDITE 220 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 ++ +KI +S+F+A VSHE+RTPLT+I GF E +++ G + NP Sbjct: 221 MRK-------LEKI-------RSEFVANVSHELRTPLTSIRGFIETLRS---GAIENPEA 263 Query: 624 IE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 E + + ID + ++ND+L +S+IE+ K E + +D+ + + + +++ A +K Sbjct: 264 REKFLDIIDFEAERLTRLINDILTLSEIENVKEGYPVEKIEMDKEIEDILYIMEKAAKDK 323 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 I ++ I+A+ Q+ +N++ N I +T GG + +S T E++I+ V Sbjct: 324 SITLKRDLNCGNLTIIANRDRFHQMMINLIDNGIKYTQEGGFVKVS-TRLEGEKIIIEVE 382 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D G+G+ ++ + + F ++ S+ + GTGLGL + K +V++ G+ + S KGT Sbjct: 383 DNGIGIPKDKIPRLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEISVESEVGKGT 442 Query: 803 LIEIIFPLYDTS 814 I F D + Sbjct: 443 KFTIRFNRKDLT 454 >gi|119716209|ref|YP_923174.1| PAS/PAC sensor hybrid histidine kinase [Nocardioides sp. JS614] gi|119536870|gb|ABL81487.1| PAS/PAC sensor hybrid histidine kinase [Nocardioides sp. JS614] Length = 1072 Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 77/261 (29%), Positives = 132/261 (50%), Gaps = 8/261 (3%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ++E ++ + +L+ A+ +A S KS+FLA +SHEIRTPL +IG ++++ PL + Sbjct: 396 VAERERAQRELADARDVAMAASRQKSEFLATMSHEIRTPLNGVIGLNDLLLRT---PL-D 451 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P + A+ + + +L ++ND+LD SKIE+GK+ L + + SL+ A Sbjct: 452 PDQLRLASGVQVASRALLGVINDILDFSKIEAGKLELERLDFEVRGVFDQVASLLGEAAR 511 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEE 736 K + + S + +P +L D + Q+ N+ SNA+ FT G I +T Sbjct: 512 AKGLELIVSCHSEVPEVLRGDPTRLAQVITNLGSNAVKFTEEGEVFIRATASPGPAGRTR 571 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + V DTGVG+ ++ + + F Q S R GTGLGL +++ +V A G+ + Sbjct: 572 LHVSVTDTGVGVPANDVGELFEAFIQADASTTRRFGGTGLGLAISREIVQALGGEIGMEP 631 Query: 797 TPAKGTLIEIIFPLYDTSHPH 817 P G++ L P Sbjct: 632 NPGGGSVFWFTADLESPGGPR 652 >gi|229101999|ref|ZP_04232712.1| hypothetical protein bcere0019_11640 [Bacillus cereus Rock3-28] gi|228681386|gb|EEL35550.1| hypothetical protein bcere0019_11640 [Bacillus cereus Rock3-28] Length = 466 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/264 (29%), Positives = 140/264 (53%), Gaps = 9/264 (3%) Query: 550 FSSCYSLTMHD-ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 FS +++ D I + NK++H+ E E + +FLA VSHE+RTPL+ I G+SE Sbjct: 206 FSERITISSEDEIGRLGKAFNKMAHS---LETEDVKRKEFLANVSHELRTPLSYIKGYSE 262 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 I + G P+ + I + + + +V+DLLD++++E L +P+ + + Sbjct: 263 AILD---GVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLI 319 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 + + +L EK++ I T+ I ++ D ++Q+ N+L NAI +T G III Sbjct: 320 EDVLDTYELKFIEKKLRISTNLNPEII-VMIDEDRMQQVLHNVLDNAIRYTNQNGNIII- 377 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 T ++ L+++DTG+G+ LE + F ++ ++ + GTGLGL + + +V + Sbjct: 378 TLEQIDDYCELKIKDTGIGIDAEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIH 437 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYD 812 G++ I S KGT + I + D Sbjct: 438 DGEWKIESEKGKGTTVFIKLKIQD 461 >gi|33592925|ref|NP_880569.1| virulence sensor protein [Bordetella pertussis Tohama I] gi|34978356|sp|P16575|BVGS_BORPE RecName: Full=Virulence sensor protein BvgS; Flags: Precursor gi|33572573|emb|CAE42160.1| virulence sensor protein [Bordetella pertussis Tohama I] Length = 1238 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 135/252 (53%), Gaps = 9/252 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E + KL AK+ A+ + K+ FLA +SHEIRTP+ AIIG E+ + Sbjct: 695 DITERAELLRKLHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPTDQEP 754 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + I+ A RS +L+++ D+LDI+KIE+GK +L +L AI + A Sbjct: 755 DRQSIQVAYDSARS---LLELIGDILDIAKIEAGKFDLAPVRTALRVLPEGAIRVFDGLA 811 Query: 680 NEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 +K I L+ + + +L D +KQ+ N++ NAI FT + GQ++++ T + + Sbjct: 812 RQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFT-TEGQVVLAVTARPDGDAA 870 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKFYI 794 V V DTG G++ + + KPF Q+ S + GTGLGL +++ +V+ G + Sbjct: 871 HVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVM 930 Query: 795 FSTPAKGTLIEI 806 S P GT + + Sbjct: 931 RSAPGVGTTVSV 942 >gi|87303321|ref|ZP_01086114.1| PAS protein [Synechococcus sp. WH 5701] gi|87282216|gb|EAQ74177.1| PAS protein [Synechococcus sp. WH 5701] Length = 549 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/246 (32%), Positives = 126/246 (51%), Gaps = 9/246 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+ A + FL+ +SHEIRTPL A+IG S+++ + + + E + Sbjct: 139 ELQLARDEALAATGAMGQFLSTISHEIRTPLNAVIGMSDLLLDTSL----DGQQQELVHT 194 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+ S L+L ++ND+LD+SKIE+ KM + E SL V + ++ KR+ +R S Sbjct: 195 INSSAELLLRLINDILDLSKIEARKMKISSETFSLRSLVLDCCRMMDAAVRAKRLELRCS 254 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTG 745 F+++ P ++ D ++QI LN+L+NAI FT G +I +S E+ L V DTG Sbjct: 255 FSDDPPDALIGDGLRIRQIVLNLLNNAIKFTSHGSVDVKIGWRPLTSSAIELDLVVADTG 314 Query: 746 VGMTNYELEKAMKPFGQIPN-SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G++ L K + F Q N + GTGLGL + + G S +G+ Sbjct: 315 TGISEDFLSKIFQDFTQEHNQAHASHHHGTGLGLAICDRLCRLMGGSIEAVSQLGQGSRF 374 Query: 805 EIIFPL 810 + PL Sbjct: 375 HVRLPL 380 >gi|329906606|ref|ZP_08274455.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium IMCC9480] gi|327547217|gb|EGF32072.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium IMCC9480] Length = 656 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 122/226 (53%), Gaps = 3/226 (1%) Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHE+RTPL + + + ++ + R G L N I +A I +GN +LD++ND+LDISK+E Sbjct: 1 MSHELRTPLNSSLILARLLADNRSGNL-NDEQIRFAETIYSAGNDLLDLINDILDISKVE 59 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALN 710 +GK+ L + + L++ ++ + +K++ A + P AD + V+QI N Sbjct: 60 AGKLELAPDVIPLEQLMASLRMTFEPMTRQKQLGFSAQLAADAPASFFADRQRVEQILKN 119 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 +LSNAI FT + GQ+ ++ ++ V V D+G+G+ + E + F Q + R Sbjct: 120 LLSNAIKFTGT-GQVGLTVCQQADGRVAFAVSDSGIGIAADQQEVIFEAFRQADGTTSRR 178 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 GTGLGL +++ + G+ + S +G+ ++ P T P Sbjct: 179 YGGTGLGLSISRDLAALLGGEITLASVAGEGSTFTLVLPAMATLAP 224 >gi|260221574|emb|CBA30274.1| hypothetical protein Csp_C22730 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 785 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 88/319 (27%), Positives = 149/319 (46%), Gaps = 29/319 (9%) Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP-----FSSCYSLTMHDISE 563 +NH+L + L R+ ++ + GS + EKL +I+ P + ++ T + E Sbjct: 182 LNHWLGGLQKL--REVVQTLGTGSGETEKL-----VIEGAPAEIQSLVAMFNQTAVLVRE 234 Query: 564 WKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + + L AK AEK S KS FLA +SHE+RTP+ AI+G ++++ Sbjct: 235 REGSRAALEQAKLAAEKARHTAEQASLAKSQFLANMSHELRTPMNAILGMLQLLEGTEL- 293 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + Y + + +L ++ND+LD SK+E+GKM L P D+ + + ++ Sbjct: 294 ---TDKQRSYTHNTASAARSLLSLLNDILDFSKVEAGKMTLDPRPFRTDQLLRDLSVILS 350 Query: 677 LYANEKRILIRTSFANNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQII---ISTTH 731 K I + ++P L D+R ++Q+ +N+ NA+ FT G +I + T+ Sbjct: 351 ANVGAKTIEVLFDVGTDVPNALVGDDMR-LQQVLINLGGNAVKFTERGEVVIRLRLKATN 409 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + V V DTG+G+ + F Q S R GTGLGL + + +V G Sbjct: 410 GAKAFVEFAVSDTGIGIASENQAHIFSGFSQAEASTTRRFGGTGLGLAICQRLVGLMGGT 469 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + S P +G+ PL Sbjct: 470 LEVDSVPGEGSNFHFTVPL 488 >gi|254421818|ref|ZP_05035536.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] gi|196189307|gb|EDX84271.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Synechococcus sp. PCC 7335] Length = 614 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/250 (33%), Positives = 132/250 (52%), Gaps = 21/250 (8%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 SE ++ +L AK+ AE+ S KSDFLA SHE+RTPL +IGF ++ + Sbjct: 345 SELTRKHQELEEAKRQAEEASRRKSDFLANTSHELRTPLNGMIGFLRLVLDDMAD--DEE 402 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 +E+ S +L+++ND+LDI+KIE+ KM L VSL E + E I Q E Sbjct: 403 EQLEFIQESHNSAIHLLNLINDVLDIAKIEANKMELELSAVSLKELMEE-IDKSQRTHIE 461 Query: 682 KRILIRTSFANNIPRILADLR------SVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 R L F +P L +++ +KQ+ LN++SNA FT G I + + + Sbjct: 462 NRGL---EFNIVLPATLDEIKLYSNYQRLKQVLLNLVSNASKFTHEGNITITAEINPQSF 518 Query: 736 E---------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 E V + V DTG+G++ + ++ + F Q+ +++ + EGTGLGL +++ +V+ Sbjct: 519 EFDKKTWPGLVKISVADTGIGVSLEKQDRLFQTFSQVDSARTRQYEGTGLGLAISQRLVE 578 Query: 787 ANMGKFYIFS 796 A GK S Sbjct: 579 AMGGKVKFIS 588 >gi|171319008|ref|ZP_02908135.1| Hpt sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] gi|171095763|gb|EDT40716.1| Hpt sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] Length = 1088 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 85/256 (33%), Positives = 133/256 (51%), Gaps = 12/256 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E Q ++L +AK+ AE ++ KS F+A +SHEIRTPL AI+G E++ Sbjct: 461 DVTEKNQLAHELRNAKQAAESANAAKSAFVAAMSHEIRTPLNAILGNLELLSLATLDAEQ 520 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD--EAVSEAISLVQL 677 R + I S + +L I++D+LD SKIE+G+M FE + D E A+++ Sbjct: 521 RNRL----STIRTSSDGLLAIISDILDFSKIEAGEMA--FERIDFDCVELTGRALAMFAP 574 Query: 678 YANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A K + + F ++ + +D + QI N+LSNA+ FT +G + T + + Sbjct: 575 GARAKGLRLYGQFDVDSALSMNSDPVRIGQIINNLLSNAVKFTSAGHVTLRLATEYAEDG 634 Query: 737 ---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +++ V DTG+GMT + E+ F Q S R GTGLGL L K + A G + Sbjct: 635 ATLLLMSVEDTGIGMTPEQQERLFSAFSQGDASIHRRFGGTGLGLALCKLLAQALGGSIH 694 Query: 794 IFSTPAKGTLIEIIFP 809 STP G+ + P Sbjct: 695 AESTPNVGSRFTVRLP 710 >gi|119509677|ref|ZP_01628823.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] gi|119465696|gb|EAW46587.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] Length = 896 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 131/241 (54%), Gaps = 12/241 (4%) Query: 557 TMHDISEWKQ---EKNKL----SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 T DI KQ E+++L A+ AEK + K +F+A VSH++R+PL AI+G++++ Sbjct: 640 TATDIDHRKQLEAERDRLLQREQAARSAAEKANQTKDEFVAMVSHDLRSPLNAILGWAKL 699 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 ++ ++ P I+R+ ++ DLL++S+I G++ L PV+L V Sbjct: 700 LRTRQLPP---DTVTNALATIERNAQSQEKLLEDLLNMSRILRGQLQLEVCPVNLVNIVK 756 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 ++ A+ K I + + +IP I+ D + Q+ N+LSNAI FTPSGG++ + Sbjct: 757 ASVETAYPSAHAKGIHLASVIDESIPPIVGDTHRLLQVLGNLLSNAIKFTPSGGRVQVQL 816 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + + E++++V DTG+G+ L + Q + + G GLGL +A+ +V+ + Sbjct: 817 AKSDDSEILIQVSDTGLGIKPEFLPHVFDRYRQAHCT--AKHSGLGLGLAIARHLVELHG 874 Query: 790 G 790 G Sbjct: 875 G 875 >gi|186471316|ref|YP_001862634.1| integral membrane sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184197625|gb|ACC75588.1| integral membrane sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 720 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 126/237 (53%), Gaps = 6/237 (2%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A+++AE + K +FLA +SHE+RTPL I+G+++++ L R + I +S Sbjct: 254 ARRMAEAANRAKGEFLANLSHELRTPLNGILGYAQILGRDDSLSL---RQRDGVAVIQQS 310 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +L ++++ LD +K+E+GK+ + V L V ++ + A ++R+ S A + Sbjct: 311 GEHLLTLIDETLDFAKVEAGKLRIEICDVPLAGLVDTIREIIGVKAEQRRLAFACSVAAD 370 Query: 694 IP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 P + AD ++Q+ LN+LSNA+ FT G++ + + V V DTG+G+ Sbjct: 371 APCGVRADEHRLRQVLLNLLSNAVKFTDR-GEVRLFIRRGESGAVRFEVHDTGIGICAEY 429 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 E PF Q +++ R GTGLGL +++ V A G+ + S +G++ P Sbjct: 430 HETIFMPFEQAGGAER-RAGGTGLGLAISRQFVRAMGGEVNVDSVVGRGSVFWFELP 485 >gi|262190201|ref|ZP_06048478.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae CT 5369-93] gi|262033921|gb|EEY52384.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae CT 5369-93] Length = 857 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 88/319 (27%), Positives = 155/319 (48%), Gaps = 17/319 (5%) Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS------SCYSLTMH--DI 561 NH+L EIL L T+ K G+ + + + + S S+ DI Sbjct: 397 NHFLFEILERQLLPTITKAAQGNNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDI 456 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 + + + + A++ AE+ + +++FLA++SHE+RTPL ++G S+++K PL N Sbjct: 457 TTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT---PL-ND 512 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 E+ + SG +L ++ND+LD S++E GK + L E V + + NE Sbjct: 513 EQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNE 572 Query: 682 KRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EV 737 K + L+ S + +D + QI N+L+NAI FT G I + + ++ Sbjct: 573 KGLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGDPLAQL 631 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 +++V DTG+G+ +L +PF Q ++ G+GLGL + ++V+ G+ ++ S Sbjct: 632 VIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSE 691 Query: 798 PAKGTLIEIIFPLYDTSHP 816 GT EI P+ P Sbjct: 692 YGIGTRFEIQLPIELVEKP 710 >gi|163800315|ref|ZP_02194216.1| sensor protein LuxQ [Vibrio sp. AND4] gi|159175758|gb|EDP60552.1| sensor protein LuxQ [Vibrio sp. AND4] Length = 859 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/263 (28%), Positives = 139/263 (52%), Gaps = 17/263 (6%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ + + + + A++ AEK + ++DFLA++SHEIRTP+ I+G ++++K+ Sbjct: 457 QDITTLIEAEKQSNVARREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKD------ 510 Query: 619 GNPRYIEYANYID---RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + E N ID SG +L ++ND+LD S+IE GK N+ S ++ + ++ Sbjct: 511 -SVNTQEQKNQIDVLCHSGEHLLAVLNDILDFSRIEQGKFNIQKHSFSFNDTMCTLENIY 569 Query: 676 QLYANEK--RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-- 731 + +K ++I + N+ I D + QI N++SNA+ FTPSG + + Sbjct: 570 RPTCIKKGVELVIENNLNPNV-EIFTDQIRLNQILFNLVSNAVKFTPSGSIWLRAELEQL 628 Query: 732 --TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 N +++ + DTG+G+ + ++++ +PF Q + G+GLGL + K ++D Sbjct: 629 DGAENSVLVVTLTDTGIGIESDKIDQMFEPFVQEEATTTREYGGSGLGLTIVKNLIDMLD 688 Query: 790 GKFYIFSTPAKGTLIEIIFPLYD 812 G + S+ GT I P+ D Sbjct: 689 GDVKVRSSKGMGTKFVITLPVRD 711 >gi|290962988|ref|YP_003494170.1| two-component system sensory histidine kinase [Streptomyces scabiei 87.22] gi|260652514|emb|CBG75647.1| putative two-component system sensory histidine kinase [Streptomyces scabiei 87.22] Length = 1424 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/261 (30%), Positives = 142/261 (54%), Gaps = 16/261 (6%) Query: 563 EWKQEKNKL-SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E +Q + +L + A+++A S +KS+FLA +SHE+RTPL +++ ++++ L P Sbjct: 842 EIEQARQELETRAQQLA-LASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPSRNL-TP 899 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + +EYA I +G+ +L ++ND+LD+SK+E+GKM++ E V L + + + + + Sbjct: 900 KQVEYAGIIHSAGSDLLQLINDILDLSKVEAGKMDVTPERVPLRKLLEYVEATFRPMTTQ 959 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---- 736 K + + A P +L D ++QI N+LSNA+ FT GG +++S ++ E Sbjct: 960 KSLDFTVATAPGTPADLLTDDSRLRQILRNLLSNAVKFTEHGG-VVLSIEPAADREVPTG 1018 Query: 737 -------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 V RV+DTG+G+ +LE F Q + + GTGLGL + + + Sbjct: 1019 VLRGGAVVAFRVKDTGIGIPQQQLETIFGAFQQADGTTSRKYGGTGLGLSITREIAHLLG 1078 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G + STP +G+ + P+ Sbjct: 1079 GAVTVDSTPGQGSTFTLYLPV 1099 >gi|238026807|ref|YP_002911038.1| hypothetical protein bglu_1g11660 [Burkholderia glumae BGR1] gi|237876001|gb|ACR28334.1| Hypothetical protein bglu_1g11660 [Burkholderia glumae BGR1] Length = 773 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 93/366 (25%), Positives = 160/366 (43%), Gaps = 21/366 (5%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +++A+ D I + + +I S N A ++FGY L + + + P + Sbjct: 247 LVDASPDAIIGVGADRLITSWNPAAQRMFGYAEAQALGRDAGMLV---APRWQRRHPLAA 303 Query: 517 LSLDLRQTLEKITLGSTKE-----EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 D+ + + L +E L+ + SLT+ D ++ + Sbjct: 304 AVRDVHDAVSGVDLLCVRENGERFRATLAASPVFDDEQVCVALSLTLRDARLQRRRERDN 363 Query: 572 SH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 H A++ A+ + K + LA VSHE+RTPL I G+ EV++N P+ Sbjct: 364 HHRLRGARDARRQADTSNRLKDELLAIVSHELRTPLNVIYGWVEVMRN----PVAEALQR 419 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + + IDRS + +V DLLD S + +GK+ L PV L V++ + A + I Sbjct: 420 QAIDAIDRSARSLSRMVADLLDASSLATGKLRLDPMPVDLVRVVADVTGALGTTAANEGI 479 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + T + + D ++Q+ N+LSNA FTP GG++ ++ + N +L V DT Sbjct: 480 TLETHCELDTCIVSGDAERLRQMLSNLLSNAFKFTPRGGRVTVALSR-ENARALLSVTDT 538 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTL 803 G G+ L + F + S G GLGL + + + + + G + S GT Sbjct: 539 GQGVAPEFLPHVFEAFRRAEGSPASPRRGLGLGLSIVRHIAELHGGSARVTSDGTGHGTT 598 Query: 804 IEIIFP 809 E+ P Sbjct: 599 FEVALP 604 >gi|313149766|ref|ZP_07811959.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12] gi|313138533|gb|EFR55893.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12] Length = 501 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 87/266 (32%), Positives = 140/266 (52%), Gaps = 15/266 (5%) Query: 548 LPF---SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 LPF C S H K +++L+ A + A++ KS FLA +SHEIRTPL AI+ Sbjct: 245 LPFRIVGICMSTQRH-----KDIEDRLNDALRKAQRSDRLKSAFLANMSHEIRTPLNAIV 299 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 GFS ++ +++ L EYA I+++G L++ +++D+LD+SKIES M + SL Sbjct: 300 GFSTLLVSEQ-SDLRPEDIEEYAALIEKNGQLLMFLISDILDLSKIESNTMEFNVSVFSL 358 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 ++ ++ + +L LI A ++ I AD ++Q+ N+++NAI FT S G Sbjct: 359 NKMFADIARMQRLNVKPGVELIADLPAEDVS-ITADPVRLEQVVNNLINNAIKFT-SRGS 416 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 I I ++V L V DTG GM+ + + F + + Q GTGLGL + K + Sbjct: 417 IRIGYRRRGEKDVELFVEDTGKGMSEEVIAHVFERFYKGDSFVQ----GTGLGLAICKTI 472 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810 V+ G+ S +G E+ P+ Sbjct: 473 VEHFGGEIRAESEVGEGARFEVCLPI 498 >gi|309807799|ref|ZP_07701731.1| PAS domain S-box protein [Lactobacillus iners LactinV 01V1-a] gi|308168901|gb|EFO70987.1| PAS domain S-box protein [Lactobacillus iners LactinV 01V1-a] Length = 612 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 97/383 (25%), Positives = 179/383 (46%), Gaps = 45/383 (11%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E +L ++L +DG+ +R G I N ++ +P T L Sbjct: 258 ERRRLDNVLMHMTDGVIATDRHGNITIINETALNFLDKTENEVKGEPITQLLG------- 310 Query: 510 NHYLTEILSLDLRQTLEKITLGS---TKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEW 564 L E+ DL T +++ + + T +E +L +I + F S +HDI+E Sbjct: 311 ---LKEVTIQDLMSTQQELIVTANVNTHDELILHADFSLIQRVTGFVSGLICVLHDITE- 366 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQRFGPLG 619 Q+KN+ + + F++ VSHE+RTPLT++ + E + KN+ P Sbjct: 367 -QQKNE------------NEQRQFVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAP-- 411 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 ++ I ++ ++NDLL++S+++ G + + E V+L++ +S ++ + Sbjct: 412 -----QFLGVIQNETERMIRMINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMML 466 Query: 680 NE---KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 K+ IR F + + D + Q+ NI++NAI ++P GG I I T ++ Sbjct: 467 KNDGVKKYKIRRIFPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQT-HKH 525 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 VIL + D G+G+ +L + F ++ ++ + GTGLGL ++K +V+A+ GK + S Sbjct: 526 VILSISDQGLGIPRKDLSRIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADS 585 Query: 797 TPAKGTLIEIIFPLYDTSHPHDC 819 + G+ I P S D Sbjct: 586 SEGNGSTFYISIPYEKMSEEGDM 608 >gi|307592365|ref|YP_003899956.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306986010|gb|ADN17890.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1490 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 92/360 (25%), Positives = 172/360 (47%), Gaps = 23/360 (6%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S+L+ + ++ +G I N KL GY +E++L + + FL + E Sbjct: 1143 SLLDNVQLVVIGLDLDGYIEYANPFFLKLTGYQLEEVLGQYWFDFLNPQEKHPLKIIFKE 1202 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYSLTM-HDISEWKQEKNKLSH 573 +L + + + + EE++++ I+K + ++++ DI+E Sbjct: 1203 VLEQNFHPYYQNSVMTKSGEERMIAWNNTILKDVAGEPIGTMSIGEDITE---------- 1252 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 +K K++F++ VSHE+RTPLT++ ++ + P +P Sbjct: 1253 ----RDKVERMKAEFISVVSHELRTPLTSMQAALSLLSEKIIDP-NSPEGEATIQIATEG 1307 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 + ++ +VND+LD+ ++ESGK+ L ++ + + AI+ +Q AN+ I ++ + Sbjct: 1308 TDRLVRLVNDILDLERLESGKIRLKKSLCNVIDLIETAIAQMQEMANQANITLKFILCSF 1367 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV--ILR--VRDTGVGMT 749 +I AD + Q+ N+LSNAI F+P I +S +E V +LR VRD G G+ Sbjct: 1368 --QIEADADRILQVLTNLLSNAIKFSPHHSTIELSVEEQQDEGVKGVLRFGVRDQGRGIP 1425 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + L+ FGQ+ S GTGLGL + +++V+ + GK + S +G+ P Sbjct: 1426 SAHLDSIFARFGQVDASDSRTKGGTGLGLAICRSIVEQHGGKIWAESIAGQGSTFYFTLP 1485 >gi|160899371|ref|YP_001564953.1| Hpt sensor hybrid histidine kinase [Delftia acidovorans SPH-1] gi|160364955|gb|ABX36568.1| Hpt sensor hybrid histidine kinase [Delftia acidovorans SPH-1] Length = 976 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 127/253 (50%), Gaps = 7/253 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ KQ + L A+K AE+ + KS FLA +SHEIRTPL AI+G E++ Sbjct: 488 DITAHKQVQRNLEDARKAAEEANQEKSSFLAAMSHEIRTPLNAILGNLEILGRSSMSEEQ 547 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R I S + +L ++ND+LD SKIESG+M++ L + + ++ + A Sbjct: 548 QTRLAT----ISSSSHSLLTLLNDVLDFSKIESGQMSVELTSFDLKSVIRQVAAIYKPLA 603 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 E I +++ + D +KQI N+LSN++ FT +G + ++ E+ Sbjct: 604 AESGIEFSLILDDSLKDGYIGDGERIKQILNNLLSNSLKFTKAGKIDVFASDRAG--ELK 661 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 ++V DTG+G+ + F Q + GTGLGL L + M G+ FS P Sbjct: 662 IKVSDTGIGIHPSQHAFIFDAFKQAGSDIAAEFGGTGLGLTLCQRMAHLMGGEIRFFSVP 721 Query: 799 AKGTLIEIIFPLY 811 KG++ E+ P Y Sbjct: 722 GKGSIFELTVPAY 734 >gi|29347433|ref|NP_810936.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29339333|gb|AAO77130.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 720 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/255 (31%), Positives = 128/255 (50%), Gaps = 11/255 (4%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T +++ K+ + L AK AE+ ++ KS FLA +SHEIRTPL AI+GFS ++ + G Sbjct: 467 TSMTVTQRKEMEEALVQAKVKAEEANTLKSSFLANISHEIRTPLNAIVGFSSLLVSAERG 526 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + EY N I+ + L+L +++D+LD+SKIE+G M + P+ + E + Sbjct: 527 ISEEKQ--EYINIIENNNTLLLQLISDVLDLSKIEAGTMEFDYAPIDVHGLFIELEDTFR 584 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 L + I I + AD + Q+ +N+++NA+ FT G I E+ Sbjct: 585 LRNKKSGICICYHRRTTECVVKADRNRLVQVMMNLMNNAVKFTGEGS---IEFGFDVRED 641 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 L V DTG G+ LE+ F ++ + Q GTGLGL + +A+V+ GK Sbjct: 642 GFLHFYVTDTGCGIPEERLEEIFGNFVKLNSFVQ----GTGLGLTICRAIVERMGGKIGA 697 Query: 795 FSTPAKGTLIEIIFP 809 S +G+ P Sbjct: 698 VSRLGQGSTFWFTLP 712 >gi|145219951|ref|YP_001130660.1| multi-sensor signal transduction histidine kinase [Prosthecochloris vibrioformis DSM 265] gi|145206115|gb|ABP37158.1| multi-sensor signal transduction histidine kinase [Chlorobium phaeovibrioides DSM 265] Length = 597 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 129/236 (54%), Gaps = 7/236 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVND 643 + DF++ VSHE+RTPLT+I G++E + + G + + + E + I + + +VND Sbjct: 364 RRDFVSSVSHELRTPLTSIRGYTETLLD---GAMHDAEHTEAFLRIIHQESEQLTALVND 420 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 +LD+SKIESG++ F PVSL E V ++S + +K + + S ++P + D Sbjct: 421 VLDLSKIESGRIEYSFAPVSLMEVVERSMSTLAPQFAKKDVRLDLSIPADLPLVRGDASY 480 Query: 704 VKQIALNILSNAIHFTPS-GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 ++ + N+L NA+ + G+I +S + V L V D G+G+ +L++ + F + Sbjct: 481 LEIVVRNLLDNAVKYVDEHNGRIRLSAAK-RDGFVTLEVEDNGIGIAQKDLDRIFERFYR 539 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 + ++ + GTGLGL + K +V A+ G + S +GT + P+ D HP D Sbjct: 540 VDKARSRQLGGTGLGLSIVKHIVLAHKGDIKVRSRLNRGTAFTLTLPVAD-QHPLD 594 >gi|309806454|ref|ZP_07700459.1| PAS domain S-box protein [Lactobacillus iners LactinV 03V1-b] gi|308167127|gb|EFO69301.1| PAS domain S-box protein [Lactobacillus iners LactinV 03V1-b] Length = 612 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 97/383 (25%), Positives = 179/383 (46%), Gaps = 45/383 (11%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E +L ++L +DG+ +R G I N ++ +P T L Sbjct: 258 ERRRLDNVLMHMTDGVIATDRHGNITIINETALNFLDKTENEVKGEPITQLLG------- 310 Query: 510 NHYLTEILSLDLRQTLEKITLGS---TKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEW 564 L E+ DL T +++ + + T +E +L +I + F S +HDI+E Sbjct: 311 ---LKEVTIQDLMSTQQELIVTANVNTHDELILHADFSLIQRVTGFVSGLICVLHDITE- 366 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQRFGPLG 619 Q+KN+ + + F++ VSHE+RTPLT++ + E + KN+ P Sbjct: 367 -QQKNE------------NEQRQFVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAP-- 411 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 ++ I ++ ++NDLL++S+++ G + + E V+L++ +S ++ + Sbjct: 412 -----QFLGVIQNETERMIRMINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMML 466 Query: 680 NE---KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 K+ IR F + + D + Q+ NI++NAI ++P GG I I T ++ Sbjct: 467 KNDGVKKYKIRRIFPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQT-HKH 525 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 VIL + D G+G+ +L + F ++ ++ + GTGLGL ++K +V+A+ GK + S Sbjct: 526 VILSISDQGLGIPRKDLSRIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADS 585 Query: 797 TPAKGTLIEIIFPLYDTSHPHDC 819 + G+ I P S D Sbjct: 586 SEGNGSTFYISIPYEKMSEEGDM 608 >gi|298385607|ref|ZP_06995165.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298261748|gb|EFI04614.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 909 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 126/248 (50%), Gaps = 10/248 (4%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 ++W++ +L K AE KS FLA +SHEIRTPL AI+GFSE++ P Sbjct: 528 TKWEKMAQQLKELKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVYSE-DPAEKE 586 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 EY + I + L+L ++ND+LD+SKIESG ++ E +L + +E +++Q Sbjct: 587 ---EYMSIIQSNNELLLRLINDILDLSKIESGILDCKRETFNLAKVCNELYTMIQPKITN 643 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + + ++ I D +KQ+ +N L+NA+ T SG I E + + V Sbjct: 644 PDVEFQMDNSSPDCWIFLDRSRLKQVWMNYLTNAVKCTKSG--YIKMGYSIEREGIRIYV 701 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+GVG+ E+ F ++ Q GTGLGL +++A+++ G+ STP G Sbjct: 702 EDSGVGIPEELQERVFGRFQKLNEFAQ----GTGLGLAISRAIIEGAGGEVGFTSTPGIG 757 Query: 802 TLIEIIFP 809 + P Sbjct: 758 STFWAWIP 765 >gi|242278021|ref|YP_002990150.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242120915|gb|ACS78611.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 652 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 132/258 (51%), Gaps = 9/258 (3%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D++E K ++ H K AE S KS+FLA +SHEIRTPL I+G ++++++ Sbjct: 243 VRDVTELKNALERVEHEKAKAETASRTKSEFLANMSHEIRTPLNGIMGMLQLMESE---- 298 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 P+ EY N ++ + ++++D+LD++++E+GK+NL+ + + + + L ++ Sbjct: 299 TQTPKQGEYVNAAMQASKRLNNVLSDILDLARVEAGKLNLYNKEFNPADELKHVFELFEV 358 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST----THT 732 + + ++ +P + D ++QI NI+ NA+ FT G +I + + Sbjct: 359 TSRHSGVNLKLKLPPELPLTVTGDPARLQQILTNIVGNALKFTHEGHVLITAQLLPRSTP 418 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 N ++ V DTGVG+ + ++ + F Q + +G GLGL + K + + G Sbjct: 419 GNCHILFTVEDTGVGIADDKMNLLFQSFTQASEGYTRQYQGAGLGLSICKRLTELMGGTI 478 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S +GT I P Sbjct: 479 AVESNVEQGTTFYISIPF 496 >gi|46201466|ref|ZP_00054984.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 372 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 125/234 (53%), Gaps = 12/234 (5%) Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFG---PLGNPRYIEYANYIDRSGNLVLDIVNDL 644 L +H++R PL I GF+E+++ +R G P+ R + ++I ++ +L I+ D Sbjct: 143 ILGMAAHDLRNPLNTIGGFAELLQ-ERIGETLPVMEARAL---DHIRQASGYMLRIIEDF 198 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD S+IE+G L EPV + E + +A+E + ++ IP + AD + Sbjct: 199 LDFSRIETGHFTLESEPVDILSLAIEVAERITSFADEHAVSVQVKAPAPIPIVPADRNRL 258 Query: 705 KQIALNILSNAIHFTPSGGQIIISTT-HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 Q+ N++ NA+ F P+G + +S H ++ V +RV+D G G+ E +K +PF + Sbjct: 259 AQVLSNLIGNAVKFAPNGSIVTVSIVFHEPSDTVSVRVQDQGPGIPALERDKLFRPFSRT 318 Query: 764 PNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 ++Q + GE GTGLGL + K+++DA+ GK + T G +F L + P Sbjct: 319 -SAQSVTGEPGTGLGLAICKSVIDAHGGKIGLDGTVTDGA--AFVFELPASRRP 369 >gi|325110192|ref|YP_004271260.1| multi-sensor signal transduction histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324970460|gb|ADY61238.1| multi-sensor signal transduction histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 603 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 97/384 (25%), Positives = 188/384 (48%), Gaps = 36/384 (9%) Query: 437 DVDTRINKRKMEIEVMQ-----LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 ++ TRIN+ + + + ++ L ++L +G+ ++ + IL N A ++ + Sbjct: 234 ELSTRINELQQQGQQLRENSERLATVLGGMVEGVIAVDSKEQILFANDAAFRMIEFEARR 293 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 ++ +P+ + +NT + + ++L+ + Q +I L ++ + I +LP Sbjct: 294 VIGRPYWEVV-RNTD--VQRVVRDVLAGEY-QLQREINLARSQSR----IAFIASRLPGE 345 Query: 552 SC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 C L +HD++E L +KI +S+F++ V HE++TP+ AI +E Sbjct: 346 PCPGVVLVLHDVTE-------LRRLEKI-------RSEFVSNVGHELKTPVAAIQACTET 391 Query: 610 IKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 + G + +P + I + ++ DL++++KIES + E + + + Sbjct: 392 LFA---GAIDDPEDAGHFLQQITDHAERLHKLIIDLMELAKIESEEDAFRRESIDIGVPI 448 Query: 669 SEAISLVQLYANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 EAI A K I L S +P +LADL V+ I N+L NA+++TP GGQ+ + Sbjct: 449 QEAIDEHYSVAQSKHIELTYKSTIEELP-VLADLDGVRTIVNNLLDNALNYTPEGGQVRV 507 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + ++ +IL + DTG+G+ LE+ + F ++ +++ GTGLGL + K + Sbjct: 508 EWSQQGDDVLIL-ISDTGMGIERKHLERIFERFYRVDSARSRDAGGTGLGLAIVKHLCQL 566 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLY 811 G + S P +G+ I FPL+ Sbjct: 567 FSGSIDVTSEPNQGSTFSIRFPLH 590 >gi|170732652|ref|YP_001764599.1| signal transduction histidine kinase with CheB and CheR activity [Burkholderia cenocepacia MC0-3] gi|169815894|gb|ACA90477.1| signal transduction histidine kinase with CheB and CheR activity [Burkholderia cenocepacia MC0-3] Length = 1220 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/258 (30%), Positives = 128/258 (49%), Gaps = 4/258 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L DI K+ A+ AE+ ++ K +FLA VSHE+R+PL I G++ V+ R Sbjct: 820 LAFQDIDALKRALGTAQSARDEAERANTAKDNFLALVSHELRSPLNVISGWAAVLMTARE 879 Query: 616 GPLGNPRYI--EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + + I R L ++++DLLD+S+I SG+ +L +PV AV + Sbjct: 880 RGVSTDEEMSQRAVTTILRHCQLQAELIDDLLDVSRISSGRFSLDTKPVDFAAAVRTVVE 939 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + A +K+I + ++ + D R ++Q+A N+L NA+ FTP GG++ ++ T Sbjct: 940 SNRPAAEKKQITLVSAGLQGRAIVSGDARRLQQVASNLLGNALKFTPDGGRVEVALTQLG 999 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 V L V D G+G+ L + F Q ++ G GLGL + K +V A+ G Sbjct: 1000 T-LVELSVTDNGIGVKAELLPRLFDRFMQSDITRTRNYGGLGLGLSIVKHLVSAHGGTVT 1058 Query: 794 IFS-TPAKGTLIEIIFPL 810 S +GT + + PL Sbjct: 1059 ASSEGEGRGTRLTVRLPL 1076 >gi|22651420|gb|AAL13332.1| bZIP histidine kinase [Pseudomonas mendocina] Length = 973 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 102/382 (26%), Positives = 173/382 (45%), Gaps = 45/382 (11%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF--TVFLEQNTPSVMNH-YL 513 I + + + +++ +G +L N+A G +E+I KPF + + + SV N L Sbjct: 39 IFDGLYEFVGLLDAQGNVLEVNQAALNGAGVTLEEIRGKPFWKARWWQISKESVANQKRL 98 Query: 514 TEILSLD--LRQTLEKITLGSTKEEKLLSL---------------------RIIIKKLPF 550 E S +R +E LG + +++++ R I K Sbjct: 99 VEAASSGEFVRCDIE--ILGKSGGREVIAVDFSLLPIRDEQENIVFLLAEGRNITDKKKA 156 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + +L H++ + + KL +AK SDF A+VSHE+RTPL+ I+G E I Sbjct: 157 EAMLALKNHELEQLVERIRKLDNAK----------SDFFAKVSHELRTPLSLILGPLETI 206 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 G G+P + ++ I R+ +L VN LLD++K+++ +M L + L + Sbjct: 207 MEAESGR-GSPYWKKF-EVIQRNAMTLLKQVNTLLDLAKMDAQQMGLSYRRADLSQLTRV 264 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIIS 728 S A +K I + P ++A D ++I LN+LSNA FTP GG I Sbjct: 265 ISSNFDGIAQQKSITLDAELP---PHLIAEVDCEKYERIILNLLSNAFKFTPDGGLIRCH 321 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + + ++ V D+G G+ ++ + F Q+ Q +GTGLGL + K V+ + Sbjct: 322 LSLSQPAHALITVSDSGPGIPQNLRKEIFERFHQLNQEGQQANQGTGLGLSIVKEFVELH 381 Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810 G + P G L ++ PL Sbjct: 382 HGTISVSDAPGGGALFQVKLPL 403 Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 84/372 (22%), Positives = 168/372 (45%), Gaps = 33/372 (8%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++ E ++ GI + + E IL+ N A ++ GY +D+ + N + M L Sbjct: 617 AVYENSAAGIVLTDTENRILNANPAFQRITGYTEKDLAQLSMEQLTPPNERTQMKQRLAR 676 Query: 516 IL-SLDLRQTLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 +L S ++E L GST S+ ++ ++ + DI+E KQ + L Sbjct: 677 LLQSGGAEYSVECSYLCKNGSTIWANA-SVSLMSPRVDEPQVILQIIDDITEKKQAQETL 735 Query: 572 SHAKK--IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN--PRYIEYA 627 + ++ + S+ +F A ++HEI PL+AI+ + R+ +GN P +E Sbjct: 736 NQLQQELVQVSRSATMGEFAAYIAHEINQPLSAIM--TNANAGTRW--IGNEPPNIMEAK 791 Query: 628 NY---IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 I R + DI+ + K + +P+ L V++ +++ + + Sbjct: 792 EALARIIRDSDRAADIIRMVRSFLK----RQGPVLKPIDLKALVADTTLILKAPSQSNGV 847 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG----QIIIS-TTHTSNEEVIL 739 + + +P I+ D ++Q+ +N+ N+I G Q+ +S +++ SN+ +I+ Sbjct: 848 SLNVIAGDTLPAIMGDAVQIQQLVINLAMNSIEAMSQVGCETRQLALSFSSNASNDALII 907 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNS-QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V+DTG G+ ++ GQ+ N+ + EG G+GL + + + + GK + S P Sbjct: 908 CVKDTGPGIPEDQI-------GQLFNAFYTTKKEGLGMGLAICLTIAEVHNGKIWAESPP 960 Query: 799 AKGTLIEIIFPL 810 A G + P+ Sbjct: 961 AGGACFFVSIPV 972 >gi|294625322|ref|ZP_06703959.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600391|gb|EFF44491.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 1134 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 122/241 (50%), Gaps = 10/241 (4%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP--LGNPRYIEYANYID 631 A+ AE + K +FLA +SHE+RTPL AI+G+S ++++ P LG I I+ Sbjct: 743 ARAQAEHANRVKDEFLATLSHELRTPLNAILGWSRLMQSDIADPANLGRGLVI-----IE 797 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF- 690 RS I++DLLD+S I SGK+ L E + V A+ L+Q A ++I + Sbjct: 798 RSARAQTQIIDDLLDMSAILSGKIRLQAEHFDIAGLVRSALELMQPTALTRKIALELDAP 857 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + D ++Q+ N+LSNA+ FTP+GG + ++ +E + L V+DTG+G+ Sbjct: 858 CDGELWFFGDAGRLQQVLTNLLSNALKFTPAGGTVRVAMD-VEDERLRLCVQDTGIGIAA 916 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 L F Q R G GLGL +++ +VD + G S G L I+ P Sbjct: 917 EFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEGHGALFTIVLP 976 Query: 810 L 810 Sbjct: 977 F 977 >gi|260771832|ref|ZP_05880750.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio metschnikovii CIP 69.14] gi|260613124|gb|EEX38325.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio metschnikovii CIP 69.14] Length = 1139 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/271 (29%), Positives = 138/271 (50%), Gaps = 13/271 (4%) Query: 542 RIIIKKLPFSSCYSLTMHD-ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 R I +K+ ++ + D I +++ ++L A K+ K +FLA SHE+RTPL Sbjct: 433 RSIREKIQLIKSQNIELEDNIQLIRKQNDELQLANKL-------KDEFLATTSHELRTPL 485 Query: 601 TAIIGFSEVIKNQRFGPLGNP-RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 +IG +E + + GP+ RY + I SG + ++V+DLLD K+ G +++ Sbjct: 486 HGMIGIAEALTSGANGPISAAHRY--QLDIIISSGQRLANLVDDLLDYHKMRYGHLDIET 543 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 + V+L A + L +K + I A+ + AD + ++Q+ N++ NAI +T Sbjct: 544 QAVNLSNATRMVLELSHHLLGKKTLRIINQIADQPLWVSADAQRLEQVLYNLIGNAIKYT 603 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 S G+I+IS T + +V ++V DTG G+ +LE +P Q +G GLGL Sbjct: 604 -SEGKIVISATPMEH-QVRIQVVDTGQGIPAEQLEHIFEPLIQAGYDSSRYRQGAGLGLT 661 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +++ +++ G Y+ S P GT PL Sbjct: 662 ISRQLIELMQGSLYVSSQPMVGTTFSFTLPL 692 >gi|257899653|ref|ZP_05679306.1| histidine kinase [Enterococcus faecium Com15] gi|293570842|ref|ZP_06681889.1| sensor protein YycG [Enterococcus faecium E980] gi|257837565|gb|EEV62639.1| histidine kinase [Enterococcus faecium Com15] gi|291609110|gb|EFF38385.1| sensor protein YycG [Enterococcus faecium E980] Length = 611 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 93/367 (25%), Positives = 173/367 (47%), Gaps = 39/367 (10%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 ME E +L S+L +DG+ +R G +++ N L E+ + + L+ Sbjct: 256 MEAERNRLDSVLSHMTDGVIATDRRGKVITINDMAVSLLDVKNEEAIGQSILTLLDIEEE 315 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYSLTMHDIS 562 + L ++L L++ T ST E + LR+ I ++ F S +HD++ Sbjct: 316 ----YTLRKLLEDPNEMVLDRST--STLESDQMILRVDFSMIRRESGFISGLVAVLHDVT 369 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQRFGP 617 E EK + +F++ VSHE+RTPLT++ + E + K++ P Sbjct: 370 E--------------QEKTERERREFVSNVSHELRTPLTSMRSYIEALSEGAWKDEEVAP 415 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 +++ +D + ++ ++NDLL++S++++G L E V+ +E V+ + + Sbjct: 416 ----NFLKVT--LDETDRMIR-MINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRFDM 468 Query: 678 YA--NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 EK IR F + D + Q+ NI++NAI ++P GG I T N Sbjct: 469 MVGNQEKNYKIRREFTQRDLWVEVDTDKIIQVVDNIMNNAIKYSPDGGTITCRLLETHNN 528 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 VIL + D G+G+ +L + + F ++ ++ GTGLGL +++ ++ A+ G + Sbjct: 529 -VILSITDQGLGIPKKDLNRVFERFYRVDKARARAQGGTGLGLAISREVIKAHRGAIWAE 587 Query: 796 STPAKGT 802 S KG+ Sbjct: 588 SKEGKGS 594 >gi|221210649|ref|ZP_03583629.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans CGD1] gi|221169605|gb|EEE02072.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans CGD1] Length = 1001 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 129/260 (49%), Gaps = 12/260 (4%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI+ KQ + KL A+ AE + KS FLA +SHEIRTPL AI+G E++ Sbjct: 492 TLTDITARKQMEQKLHEARVAAESANKAKSTFLATMSHEIRTPLNAIVGNLELMARAPLA 551 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P R + I S + +L I++D+LD+SK ES +M + P + + + + + + Sbjct: 552 PTERRRL----DTIASSSDALLRIIDDVLDLSKAESNQMTIERIPFDVRDVLDDIAAFYR 607 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG-----GQIIISTT 730 A+ K + +R A + + D ++QI N++ NAI FT G Q ++ + Sbjct: 608 PLASAKGLELRCRVAPELADGYVGDPVRLRQIMSNLVDNAIKFTERGSVSIDAQRVVRSA 667 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + E+ R+ DTG+G+ L + Q S R GTGLGLPL + + G Sbjct: 668 GGARVEI--RIADTGIGIPADSLPTLFDVYIQADASIYRRFGGTGLGLPLCRRIAMLMHG 725 Query: 791 KFYIFSTPAKGTLIEIIFPL 810 + S +GT + + PL Sbjct: 726 DLTVDSREGEGTTMCVTLPL 745 >gi|119471230|ref|ZP_01613733.1| putative two-component sensor histidine kinase and response regulator hybrid [Alteromonadales bacterium TW-7] gi|119445696|gb|EAW26979.1| putative two-component sensor histidine kinase and response regulator hybrid [Alteromonadales bacterium TW-7] Length = 654 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 138/261 (52%), Gaps = 17/261 (6%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y+L D+ + E+ K AE E+ K FLA +SHE+RTPL++I+G++E++ Sbjct: 123 YALARKDVEGERVERLK-------AEAENRSKDRFLAHLSHELRTPLSSILGYTELLMQS 175 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 F I R+G +L ++ND+LD+SKI + K+ L V+LD +++ + Sbjct: 176 DFSQQAENEL----GVIYRNGKHLLSLLNDVLDLSKIAADKLELTPSEVNLDSMLADVYT 231 Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIS--TT 730 L+++ +K + ++ +P + D V+QI +N+++NA+ FT G+I++ T Sbjct: 232 LMRVSVLDKGLALKFESDQALPLVARLDATRVRQILINLINNAVKFTDK-GEIVVKAWTQ 290 Query: 731 HTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 H E++ ++D+G+G+ + + KPF QI + + G GLGL + ++ Sbjct: 291 HVDGTEMLFFSIKDSGMGIAPEKQQLIFKPFEQIADVESRSVGGAGLGLAICAELLSRMQ 350 Query: 790 GKFYIFSTPAKGTLIEI-IFP 809 G + S KG+ I ++P Sbjct: 351 GNISLHSEIGKGSTFTISVYP 371 >gi|295399014|ref|ZP_06808996.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|294978480|gb|EFG54076.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] Length = 595 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 99/361 (27%), Positives = 167/361 (46%), Gaps = 32/361 (8%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 QL SIL + +DG+ NR+G IL TN P E L+ + F + N ++ Sbjct: 257 QLASILSSMADGVITFNRDGEILITNP--------PAERFLQAWY--FEQGNDAEIIAPL 306 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 ++ L +R +EEK S+ + ++ + + M + + + ++ Sbjct: 307 PPQVNELFIR---------VVREEKEQSIELSLQ----GRTWVILMTPLYDKTNVRGAVA 353 Query: 573 HAKKIAEKESSHK--SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + + E+ K DF+A VSHE+RTP+ + G+SE I + + + Y Sbjct: 354 VLRDMTEERRLDKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAATDEEKKEMAKVIYD 413 Query: 631 D--RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + R G LV NDLLD++++E+G + L++E V L + I Q A EK+I + Sbjct: 414 ESLRMGRLV----NDLLDLARMEAGHITLNYETVQLAPYIGRIIRKFQGLAKEKQIDLSA 469 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 F N RI D ++Q+ N++ NAI T G + I V + V+D+G G+ Sbjct: 470 EFDNEDIRIRMDPDRIEQVLTNLIDNAIRHTDQNGTVKIIAEQNGG-GVTIHVQDSGTGI 528 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L + F + ++ GTGLGL +AK +V+A+ G + S +GT Sbjct: 529 PEEDLPFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGTISVHSKLHEGTTFTFHL 588 Query: 809 P 809 P Sbjct: 589 P 589 >gi|229172696|ref|ZP_04300253.1| hypothetical protein bcere0006_18060 [Bacillus cereus MM3] gi|228610736|gb|EEK68001.1| hypothetical protein bcere0006_18060 [Bacillus cereus MM3] Length = 438 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/251 (32%), Positives = 124/251 (49%), Gaps = 13/251 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E + + L+H EK K++F+A +SHEIRTPLT I G+SE +K L Sbjct: 199 GELGELAHSLNHMSNKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKT--VDHLTEE 256 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + I + ++ +V +LLD S+++S NL+ + V L + + E I + A E Sbjct: 257 EIKQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEE 316 Query: 682 KRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K++ F I RI + D +KQ+ LNI+ NAI ++ G++ I T + VI Sbjct: 317 KQM----QFIKTIERIELMGDRNRLKQVFLNIVQNAIKYSHKNGKVYIEATKNEGQAVI- 371 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 +V+D G+G+ L + F QI N G GLGL + K MV+ + G S Sbjct: 372 KVKDEGIGIAKEHLPYIEQSFYQINN----HATGAGLGLAIVKKMVELHGGTLSFISKEG 427 Query: 800 KGTLIEIIFPL 810 GT I I PL Sbjct: 428 IGTTILIKLPL 438 >gi|255533633|ref|YP_003094005.1| ATPase [Pedobacter heparinus DSM 2366] gi|255346617|gb|ACU05943.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM 2366] Length = 825 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/262 (31%), Positives = 141/262 (53%), Gaps = 17/262 (6%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DI+ + + +L AK AE K FL+ +SHEIRTPL +IIG+SE+I+ Q+ Sbjct: 319 LTDITRSNKYRAELELAKDEAEYHGMAKQRFLSNMSHEIRTPLQSIIGYSELIRQQK--- 375 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 NP+ + + I S +L IVN++LD ++I SG+ + ++ ++E +S++Q Sbjct: 376 --NPQRKDI-DAIYHSSEHLLQIVNEVLDYNRIISGRFTFSEKVFDIEALLAEVVSVMQP 432 Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A K + + T F + + + D +KQI N+L NAI FT G++ +S + E Sbjct: 433 QAERKSLKLVTDFVLSGQKYVEGDPFRLKQILYNLLGNAIKFTAE-GEVSLSAFYKRQGE 491 Query: 737 VI---LRVRDTGVGMTNYELEKAMKPFGQIPN--SQQIRGEGTGLGLPLAKAMVDANMGK 791 + V+DTG+G+ E + F Q+ + +++ G GLGL + KA+++ G+ Sbjct: 492 RLHFTFMVKDTGIGLNEEETKLIFNEFEQVNSIENEEASKAGAGLGLTIIKALIENQGGR 551 Query: 792 FYIFSTPAKGTLIEIIFPLYDT 813 Y+ S +G+ IF +Y T Sbjct: 552 IYVKSRKGEGS----IFTVYLT 569 >gi|153829850|ref|ZP_01982517.1| sensor histidine kinase LuxQ [Vibrio cholerae 623-39] gi|229528389|ref|ZP_04417780.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae 12129(1)] gi|148874651|gb|EDL72786.1| sensor histidine kinase LuxQ [Vibrio cholerae 623-39] gi|229334751|gb|EEO00237.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae 12129(1)] gi|327485743|gb|AEA80149.1| Autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae LMA3894-4] Length = 857 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 88/319 (27%), Positives = 154/319 (48%), Gaps = 17/319 (5%) Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS------SCYSLTMH--DI 561 NH+L EIL L T+ K G + + + + S S+ DI Sbjct: 397 NHFLFEILERQLLPTITKAAQGDNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDI 456 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 + + + + A++ AE+ + +++FLA++SHE+RTPL ++G S+++K PL N Sbjct: 457 TTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT---PL-ND 512 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 E+ + SG +L ++ND+LD S++E GK + L E V + + NE Sbjct: 513 EQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNE 572 Query: 682 KRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EV 737 K + L+ S + +D + QI N+L+NAI FT G I + + ++ Sbjct: 573 KGLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGDPLAQL 631 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 +++V DTG+G+ +L +PF Q ++ G+GLGL + ++V+ G+ ++ S Sbjct: 632 VIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSE 691 Query: 798 PAKGTLIEIIFPLYDTSHP 816 GT EI P+ P Sbjct: 692 YGIGTRFEIQLPIELVEKP 710 >gi|300865341|ref|ZP_07110152.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] gi|300336644|emb|CBN55302.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] Length = 945 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 145/260 (55%), Gaps = 27/260 (10%) Query: 567 EKNKLSHAKKIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 E+ + A K+A ++H KS+FLA +SHE+RTPL I+G+++++ +R L + + +E Sbjct: 439 ERTQELEAAKVAADFANHAKSEFLANMSHELRTPLNGILGYAQIL--ERSQALAS-KELE 495 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I + G+ +L ++ND+LD+SKIE+ K++L+ + + + ++ A +K I Sbjct: 496 GIRIIHQCGDHLLTLINDILDLSKIEARKLDLYPTELRFHNFLISVAEICRIKAVQKSID 555 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-----QII-----------IS 728 + +P +I AD + ++Q+ +N++ NAI FT SGG +I+ + Sbjct: 556 FSPPKVSELPLKIYADEKRLRQVLINLIGNAIKFTDSGGVSFKVEILSKSECSLEDNNLW 615 Query: 729 TTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 TT T N + + + DTG+GMT+ +L K PF Q+ + ++ GTGLGL +++ Sbjct: 616 TTETENNQFSAAKIRFSIEDTGIGMTSEQLNKIFLPFEQVGDKSRM-ATGTGLGLAISQR 674 Query: 784 MVDANMGKFYIFSTPAKGTL 803 +V+ + + S +G++ Sbjct: 675 IVNLMGSQLEVVSQFGEGSI 694 >gi|239908130|ref|YP_002954871.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797996|dbj|BAH76985.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1233 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 94/383 (24%), Positives = 176/383 (45%), Gaps = 51/383 (13%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++L DG+ +++ E +L+ NR++ ++ E + ++ V+ + P Sbjct: 594 AVLAGVQDGVCLLSPEMEVLAVNRSLRGMYASRGEIVGQRCHEVYHGLSAPC-------- 645 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-------CYSL------------ 556 Q + +T++ L++ ++ K P S CY + Sbjct: 646 -------QDCPSLRAMATRK---LAISVVPKDDPGDSAGWVELFCYPMLDAAGSVAAVVE 695 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D++ K+ + +L+ A + AE S K FLA +SHEIRTPL A++G+ +++ R Sbjct: 696 IVRDVTAGKKLEAELAAALERAEAASQAKGAFLANMSHEIRTPLNAVLGYVQLMLRDRLE 755 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P R ++ S +L I+ND+LD SKIE+G++ + E L + ++ + + Sbjct: 756 PAQRQRL----AVVEESAATLLSIINDILDYSKIEAGRLEIKAESFDLAQCLAAVVKEQE 811 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----- 730 + A EK + + +P + D ++QI N+++NA+ +T G + ++ Sbjct: 812 VLAREKGLTLDLQLDPGLPGSVRGDGLRLRQILRNLVNNAVKYTEHGSVTLRASLLDRSP 871 Query: 731 --HTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 S E V LR V DTGVG+ +L F Q+ R GTGLGL + + + Sbjct: 872 CPTGSGERVTLRFAVIDTGVGIPADQLPAIFDSFTQVDGGLTKRQAGTGLGLAICRRLAG 931 Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809 G+ ++ S KG++ + P Sbjct: 932 LMSGEVFVDSVAGKGSVFWLECP 954 >gi|149277501|ref|ZP_01883642.1| multi-sensor hybrid histidine kinase [Pedobacter sp. BAL39] gi|149231734|gb|EDM37112.1| multi-sensor hybrid histidine kinase [Pedobacter sp. BAL39] Length = 903 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 132/247 (53%), Gaps = 8/247 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ KQ + +L AK+ A + S K FL+ +SHEIRTPL +IG + ++ + PL Sbjct: 510 DITHRKQAEKELIEAKEHALQLSEAKEMFLSVMSHEIRTPLNTVIGVAHLLLDN--DPL- 566 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P ++ N + S +L+I+ND+LD++K+E+G + L P ++ + +S + + Sbjct: 567 -PGQMDDLNMLKFSAENLLNIINDILDLTKMETGHLQLETIPFNIQSLTRDIVSSLHINV 625 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV 737 + K ++ F + IP+ + D + Q+ +N+L NAI FT G +II ++E+V Sbjct: 626 SSKGNILELDFDDRIPKFIKGDKIRLYQVLMNLLGNAIKFTDQGNILLIIRLLEENDEQV 685 Query: 738 IL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 IL V+D+G+G+ +L PF Q GTGLGL + + M+ + + Sbjct: 686 ILYFEVKDSGIGIPKEKLSLIFDPFMQATTDTSRHYGGTGLGLTITQKMLQLLGAEISVQ 745 Query: 796 STPAKGT 802 S+ GT Sbjct: 746 SSVGVGT 752 >gi|21242798|ref|NP_642380.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri str. 306] gi|21108282|gb|AAM36916.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri str. 306] Length = 1127 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 122/241 (50%), Gaps = 10/241 (4%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP--LGNPRYIEYANYID 631 A+ AE + K +FLA +SHE+RTPL AI+G+S ++++ P LG I I+ Sbjct: 736 ARAQAEHANRVKDEFLATLSHELRTPLNAILGWSRLMQSDIADPANLGRGLVI-----IE 790 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF- 690 RS I++DLLD+S I SGK+ L E + V + L+Q A ++I + Sbjct: 791 RSARAQTQIIDDLLDMSAILSGKIRLQAEHFDIAGLVRSVLELMQPAALTRKIALELDAP 850 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + D ++Q+ N+LSNA+ FTP+GG + + T +E + L V+DTG+G+ Sbjct: 851 CDGELWFFGDAGRLQQVLTNLLSNALKFTPAGGTVRV-TMDVEDERLRLCVQDTGIGIAA 909 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 L F Q R G GLGL +++ +VD + G S +G L I+ P Sbjct: 910 DFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEGQGALFTIVLP 969 Query: 810 L 810 Sbjct: 970 F 970 >gi|86138705|ref|ZP_01057278.1| sensory box histidine kinase/response regulator [Roseobacter sp. MED193] gi|85824765|gb|EAQ44967.1| sensory box histidine kinase/response regulator [Roseobacter sp. MED193] Length = 866 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 100/378 (26%), Positives = 174/378 (46%), Gaps = 16/378 (4%) Query: 445 RKMEIEVMQLCSILEA----TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R++ E Q S +EA + D I + +R+G IL+ N A +FGY ED++ + Sbjct: 239 RRLAEERSQAGSRMEAMISSSLDAILMTDRQGRILAFNGAAEAIFGYKREDVIGEQMADL 298 Query: 501 -----LEQNTPSVMNHYL-TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554 L Q + M+ L T + R ++ L + E + + + I + + Sbjct: 299 IIPPHLRQAHYAGMDRLLKTSEARVAGRGRVQLQALRESGEIFPVEVSLSISRSQADMVF 358 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 + DIS+ +L A+ A K++ L +SHE+RTPLT I+G +++ Q Sbjct: 359 VAYLRDISDRIAADEELRRARDDALAGERAKANLLTVMSHEMRTPLTGILGAIDLL--QE 416 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P N Y + + SG L+L VND+L +S +ESG + P L E + + Sbjct: 417 TDP--NAEQSRYLDAMSVSGELLLHHVNDVLQLSSLESGIASEAACPFDLREVMERLVGS 474 Query: 675 VQLYANEKRILIRTSFA--NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 Q +A ++ ++ + R+++Q LN++ NAI FT G ++ Sbjct: 475 QQAHARSHGNVLTLNYGLDEAASMVAGQPRALQQALLNLIGNAIKFTRDGAVLVDVQLSA 534 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + + V DTG G+ +L++ + F + +S + EGTGLGL + + +V+A G Sbjct: 535 TAGHIEFHVSDTGEGIAKKDLKRIFEDFITLDSSYRRGSEGTGLGLAITRRIVEAIGGTI 594 Query: 793 YIFSTPAKGTLIEIIFPL 810 S +G+L + PL Sbjct: 595 TCDSELGEGSLFSLTLPL 612 >gi|330952072|gb|EGH52332.1| PAS protein [Pseudomonas syringae Cit 7] Length = 595 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 93/375 (24%), Positives = 165/375 (44%), Gaps = 55/375 (14%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L ++L++ DG+ +I+R+G + N + G+ S + Sbjct: 259 RLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGW-----------------DESRLGQS 301 Query: 513 LTEILSL-DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-------------- 557 L E LS +L + L + G T E L I I YS+T Sbjct: 302 LGEALSRPELDEQLHLVLRGGTLERAPEDLAIEIDGESRLLTYSMTPVSHTKGHILGAVM 361 Query: 558 -MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI-IGFSEVIKNQRF 615 +HD++E + + +S+F+ R SHE+RTP+T + + F + + F Sbjct: 362 VLHDVTEQRAFERV--------------RSEFVLRASHELRTPVTGMHMAFGLLQERLHF 407 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P R + N + ++ ++NDLL+ S+ ++G L P S++ + EA + Sbjct: 408 AP--ESREADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSVETLLQEAKARF 465 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A E+ I++ +PR+ AD ++++ N+L NA+ TP G I + E Sbjct: 466 EDQAQEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTPPNGLIRLQ-ARRHGE 524 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 I+ V D G G+ + + +PF Q+ + G GLGL L K +V + G+ ++ Sbjct: 525 RAIISVEDNGEGIAYGQQGRIFEPFVQVGRKKG----GAGLGLALCKEIVQLHGGRMGVY 580 Query: 796 STPAKGTLIEIIFPL 810 S P +GT + PL Sbjct: 581 SRPGQGTQFYMALPL 595 >gi|310796718|gb|EFQ32179.1| hsp90-like protein [Glomerella graminicola M1.001] Length = 1990 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/261 (31%), Positives = 131/261 (50%), Gaps = 20/261 (7%) Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 +S Y + DI++ K + KL A + KS FL+ +SHEIRTPL I G + Sbjct: 1302 ASSYFGSATDINDHKLLEAKLKEAME-------SKSRFLSNMSHEIRTPLIGISGMVSFL 1354 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 ++ N +Y N I S N +L I+ND+LD+SK+++G M L +E + + Sbjct: 1355 QDTVL----NEEQRDYTNTIQTSANSLLMIINDILDLSKVDAGMMKLKYEWFHTRSLIED 1410 Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI---- 725 LV A KR+ + ++P + D ++Q+ LN++ NAI FT G Sbjct: 1411 VNELVSTMAIAKRLELNYIVEEDVPAWVKGDKVRIRQVLLNVIGNAIKFTTEGEVFSRCR 1470 Query: 726 IISTTHTSN--EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 + +SN E++L + DTG G T E + KPF QI S + G+GLGL ++ Sbjct: 1471 VYKDGASSNLDNEIVLEFAIIDTGRGFTKEEADLIFKPFSQIDGSSTRQHGGSGLGLVIS 1530 Query: 782 KAMVDANMGKFYIFSTPAKGT 802 + +V+ + GK + P KG+ Sbjct: 1531 RQLVELHGGKMEGSAVPGKGS 1551 >gi|309809785|ref|ZP_07703639.1| PAS domain S-box protein [Lactobacillus iners SPIN 2503V10-D] gi|308169964|gb|EFO72003.1| PAS domain S-box protein [Lactobacillus iners SPIN 2503V10-D] Length = 612 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 97/383 (25%), Positives = 179/383 (46%), Gaps = 45/383 (11%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E +L ++L +DG+ +R G I N ++ +P T L Sbjct: 258 ERRRLDNVLMHMTDGVIATDRHGNITIINETALNFLDKTENEVKGEPITQLLG------- 310 Query: 510 NHYLTEILSLDLRQTLEKITLGS---TKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEW 564 L E+ DL T +++ + + T +E +L +I + F S +HDI+E Sbjct: 311 ---LKEVTIQDLMSTQQELIVTANVNTHDELILHADFSLIQRVTGFVSGLICVLHDITE- 366 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQRFGPLG 619 Q+KN+ + + F++ VSHE+RTPLT++ + E + KN+ P Sbjct: 367 -QQKNE------------NEQRQFVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAP-- 411 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 ++ I ++ ++NDLL++S+++ G + + E V+L++ +S ++ + Sbjct: 412 -----QFLGVIQNETERMIRMINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMML 466 Query: 680 NE---KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 K+ IR F + + D + Q+ NI++NAI ++P GG I I T ++ Sbjct: 467 KNDGVKKYKIRRIFPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQT-HKH 525 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 VIL + D G+G+ +L + F ++ ++ + GTGLGL ++K +V+A+ GK + S Sbjct: 526 VILSISDQGLGIPRKDLSRIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADS 585 Query: 797 TPAKGTLIEIIFPLYDTSHPHDC 819 + G+ I P S D Sbjct: 586 SEGNGSTFYISIPYEKMSEEGDM 608 >gi|332305741|ref|YP_004433592.1| integral membrane sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173070|gb|AEE22324.1| integral membrane sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 911 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 87/243 (35%), Positives = 129/243 (53%), Gaps = 18/243 (7%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L+ AK A+K + KS FLA +SHEIRTPL AIIGFS++ K R L + Y + I Sbjct: 526 LALAKHEADKANKAKSQFLANMSHEIRTPLNAIIGFSQLAK--RSNDLAEHQ--SYIHKI 581 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 S + +L I+ND+LDISKIES K+ L L + ++ A ++ + A+ K + + Sbjct: 582 SSSSDTLLAIINDILDISKIESEKLVLEEMEFDLHDILNRASTMFEPGASIKN--VDWAL 639 Query: 691 ANNIPRIL---ADLRSVKQIALNILSNAIHFTPSGGQIIISTT---HTSNE-----EVIL 739 +N+P L D ++QI +N+ SNAI FT G+I++ T H NE + + Sbjct: 640 EDNLPAGLFFKGDPLRIEQIVINLCSNAIKFTQQ-GRIVLHATLLEHNKNESPPTARIQI 698 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V+DTG+G+T + + F Q S R GTGLGL ++ + G I S Sbjct: 699 TVKDTGIGITPAQQGNLFRAFSQADTSTTRRFGGTGLGLAISNELTQLMQGSLTIESEEG 758 Query: 800 KGT 802 G+ Sbjct: 759 VGS 761 >gi|282899300|ref|ZP_06307269.1| Multi-sensor Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] gi|281195757|gb|EFA70685.1| Multi-sensor Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] Length = 315 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 131/229 (57%), Gaps = 7/229 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN-LVLDIVND 643 K++F++ VSHE+RTPLTAI G E++ + P+ E I S + +L +VN+ Sbjct: 91 KNEFVSVVSHEVRTPLTAIKGALEILATGIL--VDEPQEAEQMLKIGVSNSERLLRLVNN 148 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP--RILADL 701 +L++ ++SGKM L+ + ++ V +A+ V+ A + I I + + +P ILAD Sbjct: 149 ILNLEMLDSGKMRLNLKLCDINIMVKQAMETVRPIAQQNSIEISYNTLD-VPNTEILADE 207 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 ++ Q+ N+LSN+I F+ SG ++ I T SN+E+I+ V+D G G+ ++LE + F Sbjct: 208 ETIVQVLTNLLSNSIKFSHSGNKVEIYAT-VSNKEIIVAVKDYGKGVPPHKLETIFERFE 266 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 Q+ S + GTGLGL + K +V+ + GK ++ S G+ PL Sbjct: 267 QVDVSDSRQKGGTGLGLAICKNIVEKHQGKIWVESILGSGSTFYFTLPL 315 >gi|271963478|ref|YP_003337674.1| GAF sensor hybrid histidine kinase [Streptosporangium roseum DSM 43021] gi|270506653|gb|ACZ84931.1| GAF sensor hybrid histidine kinase [Streptosporangium roseum DSM 43021] Length = 1468 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 132/262 (50%), Gaps = 14/262 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN- 620 SE +Q + +L K S +KS+FLA +SHE+RTPL + + + P N Sbjct: 894 SEIEQARQELEDRAKQLALASKYKSEFLANMSHELRTPLNS---LLILAQLLAQNPARNL 950 Query: 621 -PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + +EYAN I +G +L ++ND+LD+SKIE+GKMN+ E + L + + + + Sbjct: 951 TAKQVEYANVIHSAGTDLLQLINDILDLSKIEAGKMNISLESLPLRQLLDYVEATFRPLT 1010 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHT----- 732 EK + + A+++P +L D + ++Q+ N+LSNA+ FT +G Q+ I Sbjct: 1011 TEKGLRFDVTVASDVPGELLMDEQRLRQVLRNLLSNAVKFTETGSVQLRIERAGRMELLG 1070 Query: 733 --SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 E + V DTG+G+ L + F Q + + GTGLGL +++ + G Sbjct: 1071 VPGQETLAFHVVDTGIGIAEENLSQIFDAFQQADGTTSRKYGGTGLGLSISREIAALFNG 1130 Query: 791 KFYIFSTPAKGTLIEIIFPLYD 812 + S +G+ + P+ D Sbjct: 1131 EIRAVSALGEGSTFSLCLPIAD 1152 >gi|312110380|ref|YP_003988696.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] gi|311215481|gb|ADP74085.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] Length = 595 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 99/361 (27%), Positives = 167/361 (46%), Gaps = 32/361 (8%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 QL SIL + +DG+ NR+G IL TN P E L+ + F + N ++ Sbjct: 257 QLASILSSMADGVITFNRDGEILITNP--------PAERFLQAWY--FEQGNDAEIIAPL 306 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 ++ L +R +EEK S+ + ++ + + M + + + ++ Sbjct: 307 PPQVNELFIR---------VVREEKEQSIELSLQ----GRTWVILMTPLYDKTNVRGAVA 353 Query: 573 HAKKIAEKESSHK--SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + + E+ K DF+A VSHE+RTP+ + G+SE I + + + Y Sbjct: 354 VLRDMTEERRLDKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAATDEEKKEMAKVIYD 413 Query: 631 D--RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + R G LV NDLLD++++E+G + L++E V L + I Q A EK+I + Sbjct: 414 ESLRMGRLV----NDLLDLARMEAGHITLNYETVQLAPYIGRIIRKFQGLAKEKQIDLSA 469 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 F N RI D ++Q+ N++ NAI T G + I V + V+D+G G+ Sbjct: 470 EFDNEDIRIRMDPDRIEQVLTNLIDNAIRHTDQNGTVKIIAEQNGG-GVTIHVQDSGTGI 528 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L + F + ++ GTGLGL +AK +V+A+ G + S +GT Sbjct: 529 PEEDLPFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGTISVHSKLHEGTTFTFHL 588 Query: 809 P 809 P Sbjct: 589 P 589 >gi|222149462|ref|YP_002550419.1| two component sensor kinase/response regulator hybrid [Agrobacterium vitis S4] gi|221736445|gb|ACM37408.1| two component sensor kinase/response regulator hybrid [Agrobacterium vitis S4] Length = 1282 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 81/284 (28%), Positives = 132/284 (46%), Gaps = 31/284 (10%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + + D SE KQ + +L+ AE KS FLA +SHEIRTP++ ++G +E++ + Sbjct: 678 WLFVISDASEAKQREAELTTLAAQAEAADKAKSRFLANMSHEIRTPMSGVLGMTELLLSS 737 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + R + + I +SG +L I+ND++D SKI+ G ++L P AV + ++ Sbjct: 738 NL----DARQKTFVDVIVKSGRSLLTIINDIIDFSKIDDGSLSLRSAPFDPLAAVEDVVT 793 Query: 674 LVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQII------ 726 L+ A EK + I + +LA D +QI N+L AI T G ++ Sbjct: 794 LMAGRAAEKDVDILVRGQGRLTHMLAGDAGRFRQILTNLLGEAIRATDRGHVLVDLGLRQ 853 Query: 727 ---------------ISTTHT-----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 IS T+ + ++LR+ DTG GMT + A F Q+ + Sbjct: 854 EEPDLDVTLQSHGDPISETNAEVSDRARAWLVLRIEDTGHGMTPEQCLMAFTKFSQMNDG 913 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +G GLG +A +VD G + S P +G + + P Sbjct: 914 ALHHRDGAGLGFSIAGGLVDLFGGTIGVESAPGRGATVTVNLPF 957 >gi|170077489|ref|YP_001734127.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] gi|169885158|gb|ACA98871.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] Length = 764 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/265 (30%), Positives = 136/265 (51%), Gaps = 15/265 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q+ +L AK+ AE + K+ FL+ +SHE+RTPL AI+G E++K+ N Sbjct: 363 EQQNLELIEAKQAAENANRTKTRFLSSMSHELRTPLNAILGLVELLKDS-----DNLDEY 417 Query: 625 EYANY--IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 E + I SG +L ++ D+LDIS+IE+G++ LHF+ V + + ++Q N Sbjct: 418 ERGDLQTISDSGIHLLHLIEDILDISRIEAGRVELHFQEVDFPKFLQGIKGIIQAQINTD 477 Query: 683 RILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEV 737 I F +P +++ D + +KQ+ LN+L NA FT G I H+ S Sbjct: 478 AIEFICEFPPKLPAVVSIDEKKLKQVLLNLLHNAAKFTEKGQIIFRLKLHSFPDLSETYT 537 Query: 738 IL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +L V D+G+G+ +L PF Q + + + +GTGLGL +++ +V GK + Sbjct: 538 LLNFEVEDSGIGIEPDKLNLIFLPFEQTGKA-KFKTQGTGLGLAISQEIVRMMGGKISVT 596 Query: 796 STPAKGTLIEIIFPLYDTSHPHDCI 820 S P G+ E + + P D + Sbjct: 597 SQPGIGSKFEFMICTQIVNKPSDSL 621 >gi|147672178|ref|YP_001215511.1| sensor histidine kinase LuxQ [Vibrio cholerae O395] gi|262168577|ref|ZP_06036273.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae RC27] gi|146314561|gb|ABQ19101.1| sensor histidine kinase LuxQ [Vibrio cholerae O395] gi|227015203|gb|ACP11412.1| sensor histidine kinase LuxQ [Vibrio cholerae O395] gi|262023106|gb|EEY41811.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae RC27] Length = 857 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 88/319 (27%), Positives = 154/319 (48%), Gaps = 17/319 (5%) Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS------SCYSLTMH--DI 561 NH+L EIL L T+ K G + + + + S S+ DI Sbjct: 397 NHFLFEILERQLLPTITKAAQGDNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDI 456 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 + + + + A++ AE+ + +++FLA++SHE+RTPL ++G S+++K PL N Sbjct: 457 TTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT---PL-ND 512 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 E+ + SG +L ++ND+LD S++E GK + L E V + + NE Sbjct: 513 EQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNE 572 Query: 682 KRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EV 737 K + L+ S + +D + QI N+L+NAI FT G I + + ++ Sbjct: 573 KGLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGDPLAQL 631 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 +++V DTG+G+ +L +PF Q ++ G+GLGL + ++V+ G+ ++ S Sbjct: 632 VIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSE 691 Query: 798 PAKGTLIEIIFPLYDTSHP 816 GT EI P+ P Sbjct: 692 YGIGTRFEIQLPIELVEKP 710 >gi|153217334|ref|ZP_01951085.1| sensor histidine kinase LuxQ [Vibrio cholerae 1587] gi|124113650|gb|EAY32470.1| sensor histidine kinase LuxQ [Vibrio cholerae 1587] Length = 834 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 88/319 (27%), Positives = 154/319 (48%), Gaps = 17/319 (5%) Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS------SCYSLTMH--DI 561 NH+L EIL L T+ K G + + + + S S+ DI Sbjct: 374 NHFLFEILERQLLPTITKAAQGDNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDI 433 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 + + + + A++ AE+ + +++FLA++SHE+RTPL ++G S+++K PL N Sbjct: 434 TTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT---PL-ND 489 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 E+ + SG +L ++ND+LD S++E GK + L E V + + NE Sbjct: 490 EQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNE 549 Query: 682 KRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EV 737 K + L+ S + +D + QI N+L+NAI FT G I + + ++ Sbjct: 550 KGLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGDPLAQL 608 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 +++V DTG+G+ +L +PF Q ++ G+GLGL + ++V+ G+ ++ S Sbjct: 609 VIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSE 668 Query: 798 PAKGTLIEIIFPLYDTSHP 816 GT EI P+ P Sbjct: 669 YGIGTRFEIQLPIELVERP 687 >gi|71906060|ref|YP_283647.1| PAS [Dechloromonas aromatica RCB] gi|71845681|gb|AAZ45177.1| PAS protein [Dechloromonas aromatica RCB] Length = 787 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 127/251 (50%), Gaps = 7/251 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ +L+ AK +AE + KS FLA +SHEIRTPL AI G + +++ + + Sbjct: 388 RERTRELTVAKDLAETANRAKSAFLANMSHEIRTPLNAITGMAYLMRRDGV----SEKQG 443 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E + ID +G +L+I++D+L +S+IE+G+M L +P+ L + A+ ++ A K + Sbjct: 444 ERLDRIDAAGQHLLEIIHDVLSLSQIEAGRMTLEAKPLDLSVVCTGALEVLADEARRKGL 503 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRV 741 +R F + D ++Q LN L NA+ FT +G ++ + N+ + V Sbjct: 504 SLRQEFGELPVGLHGDAVRLRQSLLNYLGNAVKFTEAGSVVLRCHELSRNDSGHLIRFEV 563 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G GM+ + +PF Q+ +S GTGLGL + + + G STP G Sbjct: 564 VDSGPGMSPESRTQLFQPFHQVDSSSTRVHGGTGLGLVITRRLAQLMGGDAGCDSTPGVG 623 Query: 802 TLIEIIFPLYD 812 + L D Sbjct: 624 SRFWFTVCLAD 634 >gi|189345724|ref|YP_001942253.1| histidine kinase [Chlorobium limicola DSM 245] gi|189339871|gb|ACD89274.1| histidine kinase [Chlorobium limicola DSM 245] Length = 231 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 123/226 (54%), Gaps = 3/226 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K+DF++ VSHE+RTPL +I+GF+ + ++ L +E+ + I + ++ D+ Sbjct: 2 KNDFISTVSHELRTPLFSILGFTGTLLREQ-DELERETRMEFISIIHDESKRLSALIEDV 60 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 L ISKI+SG+++ + VSE +++ A+EK I +R + I AD S+ Sbjct: 61 LMISKIDSGRVSYKKSELDPSITVSEVCRSLKIRADEKNIDLRLRVCAPMEHIFADQDSL 120 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 KQ+A+NI+ NA+ FTP GG + +S + + V D G G+ E EK + F ++ Sbjct: 121 KQVAINIIGNALKFTPPGGVVQVS-LFCEAQTMCFSVEDNGPGIPAEEAEKIFEKFFRVE 179 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + +GTGLGL + K +V A+ G + S P + T+ + P+ Sbjct: 180 RPGEAV-DGTGLGLSIVKEIVAAHDGTVEVKSVPNQSTVFMVRLPI 224 >gi|297199601|ref|ZP_06916998.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083] gi|297147445|gb|EDY57506.2| two-component system sensor kinase [Streptomyces sviceus ATCC 29083] Length = 1376 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/266 (27%), Positives = 141/266 (53%), Gaps = 13/266 (4%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E ++ +L + S +KS+FLA +SHE+RTPL +++ + ++ + G L + Sbjct: 919 AELQRSNAELEEKAALLATSSQYKSEFLANMSHELRTPLNSLLILARLLSDNPDGHLSD- 977 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + +++A I RSG+ +L ++ND+LD+SKIE+G+M++ + + L + + + + + Sbjct: 978 QEVQFATTIHRSGSDLLQLINDILDLSKIEAGRMDVRPKKLPLIKLLDYVHATFRPLTLD 1037 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST----------T 730 + + + ++PR + +D + ++QI N+LSNAI FT SG ++ + Sbjct: 1038 RGLAFEVAVGEDVPREMYSDEQRLQQILRNLLSNAIKFTASG-RVELRVNRIKDPDHRYV 1096 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 S++ V V DTG+G+ +L + F Q + + GTGLGL +++ + G Sbjct: 1097 RDSDDVVAFAVSDTGIGIAREKLPVIFEAFQQADGTTNRKYGGTGLGLSISREIAGLLGG 1156 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHP 816 + S P +G+ + P+ HP Sbjct: 1157 RIVAESEPGRGSTFTLYVPVVSPGHP 1182 >gi|312194844|ref|YP_004014905.1| histidine kinase [Frankia sp. EuI1c] gi|311226180|gb|ADP79035.1| histidine kinase [Frankia sp. EuI1c] Length = 545 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 133/244 (54%), Gaps = 8/244 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 HA+ IA ++S K +F+AR+ HE+RTPL A++GF+++++ + PL N ++ I Sbjct: 111 HARVIAARDSRAKDEFMARLGHELRTPLNAMLGFAQLLELE---PLPN-NLLDDVQRIIT 166 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 G + I++D+LD++++ +G+ ++ PV++ + V + LV+ A + IR Sbjct: 167 GGRHMQAIIDDVLDLARLRAGRGDITKAPVNVLDIVEGVVELVEPLAQRRG--IRRVIHP 224 Query: 693 NIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 + P I AD R + Q+ LN++ NA+ + GG + + + + + V D G G+ Sbjct: 225 SEPLIADADRRRLWQVLLNLVGNALKYGREGGTVRVGIVPITGGRLRIEVEDDGQGLPPD 284 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + + +PF ++ ++Q R EG+GLGL L+ A+V A G S G++ ++ Sbjct: 285 AMARLFRPFERL-GAEQTRIEGSGLGLALSHALVTAMGGVLTAASRYGVGSVFAVVLDAV 343 Query: 812 DTSH 815 D + Sbjct: 344 DVRY 347 >gi|260494920|ref|ZP_05815049.1| sensor histidine kinase [Fusobacterium sp. 3_1_33] gi|260197363|gb|EEW94881.1| sensor histidine kinase [Fusobacterium sp. 3_1_33] Length = 623 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 129/245 (52%), Gaps = 18/245 (7%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +LS +K++AE + K++FLA++SHE+RTPLT IIG+S ++ + + E Sbjct: 145 ELSISKEVAESANKAKNEFLAKISHEMRTPLTPIIGYSRIL----LKEINDVSSKEKLEI 200 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL----DEAVSEAISLVQLYANEKRIL 685 I SG +L+ N+LLD SKIESGK++L++E ++ + E I L ++ K I Sbjct: 201 IHTSGVKLLNFTNELLDFSKIESGKVDLNYETFNIRKLFQDIYHEHIDLAKM----KNIN 256 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + + + I +D + +IA NI+ NAI +T G ++ + V D+G Sbjct: 257 FKIDYLHANVSIYSDKIKIYEIAKNIIHNAIKYTEKG--FVLCDIFVEKNTLFFNVYDSG 314 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +GM+ ++ + F QI N Q G GLGL + K +++ GK + S G+ + Sbjct: 315 IGMSEENIKNIFESFVQIGNEQS----GAGLGLSITKKLLEVLNGKIEVESKVGMGSTFK 370 Query: 806 IIFPL 810 I P+ Sbjct: 371 IQIPI 375 >gi|189466394|ref|ZP_03015179.1| hypothetical protein BACINT_02769 [Bacteroides intestinalis DSM 17393] gi|189434658|gb|EDV03643.1| hypothetical protein BACINT_02769 [Bacteroides intestinalis DSM 17393] Length = 1404 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 77/253 (30%), Positives = 126/253 (49%), Gaps = 12/253 (4%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 ++K +LS + ++ + K F ++HE RTP+T IIG E + NP+ IE Sbjct: 869 RQKVQLSRMARKVQELALDKIAFFTNITHEFRTPITLIIGPIERALKLSY----NPQVIE 924 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 N+++R+ +L +VN L+D KIESGK+N+ + ++ +++A E+ I Sbjct: 925 QLNFVERNSKYLLSLVNQLMDFRKIESGKLNIVATKGDFVSFIHSLLTPFEVFAGERNIS 984 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII-----STTHTSNEEVILR 740 I+ F I D ++ ++ N+LSNAI FTP GG I I E++ L Sbjct: 985 IKHYFHMKSSEIFFDEEAMHKVITNLLSNAIKFTPDGGSISIYIATLPAKDDKEEKLYLC 1044 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQ--IRGE-GTGLGLPLAKAMVDANMGKFYIFST 797 V DTG G+ + E+ F Q + + G+ GTG+GL L K +V + G+ + + Sbjct: 1045 VSDTGTGIQEPDTEQIFNRFYQSKKQAKYPVYGQTGTGIGLYLCKRIVKMHDGEICVRNN 1104 Query: 798 PAKGTLIEIIFPL 810 G I+ PL Sbjct: 1105 HTIGCSFRILLPL 1117 >gi|167625694|ref|YP_001675988.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella halifaxensis HAW-EB4] gi|167355716|gb|ABZ78329.1| PAS/PAC sensor hybrid histidine kinase [Shewanella halifaxensis HAW-EB4] Length = 1203 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 129/250 (51%), Gaps = 8/250 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ K+ + + AK+ AE + +KS+FLA +SHEIRT + AIIG ++ + Sbjct: 663 THKDITRHKRNEVAMLEAKQDAEMANLYKSEFLANMSHEIRTRMNAIIGMLQLAQRTSLT 722 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P Y+E A + S + +L I+ND+LD SKIE+GK+ L LD+ + A+ + Sbjct: 723 P-QQKDYLEKAGF---SAHSLLRIINDILDFSKIEAGKLELERIGFPLDKVLDHALDINA 778 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 L A EK + + IL D + Q+ +N+LSNA+ FT SG ++ + Sbjct: 779 LKAQEKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQSGEIELGCEDVGERD 838 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + L+ VRDTG+G++ + F Q S + GTGLGL ++K +V G Sbjct: 839 HRITLKFWVRDTGIGISKEQQATLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTM 898 Query: 793 YIFSTPAKGT 802 + S G+ Sbjct: 899 QVESEMGVGS 908 >gi|293376179|ref|ZP_06622424.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Turicibacter sanguinis PC909] gi|292645166|gb|EFF63231.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Turicibacter sanguinis PC909] Length = 623 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/248 (31%), Positives = 127/248 (51%), Gaps = 8/248 (3%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + +L +A K A + K+ FLA+VSHE++TPL AI G+ +++K + NP+ + Sbjct: 371 QSQELEYAWKKALVANQAKTHFLAKVSHELKTPLNAIKGYIQLLK----LSIDNPKQLRQ 426 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 ID S +L+L V++LLD S IE GK+ L + + L L + ++K + Sbjct: 427 IEIIDHSSDLLLKQVDELLDFSVIEDGKVKLEIDTIDLFHTAHVIEELFIINTSKKSLDY 486 Query: 687 RTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVR 742 + IP +L D +KQI +N++SNA+ FT G ++ + + EV L RV+ Sbjct: 487 VVNIDEQIPSVLYGDEARIKQIIINLMSNALKFTEHGKIEVSFDLDYQTENEVYLSIRVK 546 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG G+ +L F Q NS + GTGLGL ++K + + G + S G+ Sbjct: 547 DTGKGIAENKLNSIFDSFTQENNSISRQFGGTGLGLSISKRLAEVMGGNLIVESKVNVGS 606 Query: 803 LIEIIFPL 810 + PL Sbjct: 607 TFTLFLPL 614 >gi|332686790|ref|YP_004456564.1| two-component sensor kinase [Melissococcus plutonius ATCC 35311] gi|332370799|dbj|BAK21755.1| two-component sensor kinase [Melissococcus plutonius ATCC 35311] Length = 608 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 98/370 (26%), Positives = 174/370 (47%), Gaps = 31/370 (8%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 ME E +L S+L +DG+ +R G IL+ N L E+ + L+ Sbjct: 253 MEAERNRLNSVLSHMTDGVIATDRRGKILTINEMALSLLDVKTEEAIGTFILTLLDIEAD 312 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR----IIIKKLPFSSCYSLTMHDIS 562 + L L + +++ S K ++ L +R +I ++ F + +HD++ Sbjct: 313 YNLRKLLEAPNELLIDRSV------SNKNDEQLIIRADFTMIRRESGFITGIVCVLHDVT 366 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E QEKN E+E + +F++ VSHE+RTPLT++ + E + G NP Sbjct: 367 E--QEKN---------ERE---RREFVSNVSHELRTPLTSMHSYIEALSE---GAWKNPE 409 Query: 623 YI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL--VQLYA 679 ++ + ++ ++NDLL++S+++SG L E V+ +E V+ + + L Sbjct: 410 VAPDFLKVTLEETDRMIRMINDLLNLSRMDSGTSELQLEYVNFNELVNFVLDRFDMMLDK 469 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 +K I F + D + Q+ NIL+NAI ++P GG+I T N V Sbjct: 470 EKKNYTIDREFTRRDLWLEIDTDKIIQVLDNILNNAIKYSPDGGKITCRLLETHNNAV-F 528 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V D G+G+ ++ K F ++ ++ + GTGLGL ++K ++ A+ G ++ S Sbjct: 529 SVTDQGLGIPKKDIAKVFDRFYRVDKARARKQGGTGLGLAISKEVIRAHNGFIWVESEEG 588 Query: 800 KGTLIEIIFP 809 KG+ I P Sbjct: 589 KGSTFYISLP 598 >gi|298483182|ref|ZP_07001362.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298270699|gb|EFI12280.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 579 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 137/253 (54%), Gaps = 15/253 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ KQ + +L AK+ AE+ KS FLA +SHEIRTPL AI+GFS ++ L Sbjct: 325 DITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDEAEL- 383 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R++ Y + + + L+L++++D+LDISKIE+G ++L V + + E I+ ++ Sbjct: 384 --RHV-YMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIA---TFS 437 Query: 680 NEKR-ILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 ++KR + F N P+I+ AD + Q+ N L+NA+ FT + G I +S + + Sbjct: 438 HKKRDSAVELRFDENSPQIVIDADKNRIVQVLSNFLTNALKFT-TKGSITLSYSLEDESQ 496 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V V DTG G+ + + + F ++ + Q G GLGL + +++V GK + S Sbjct: 497 VRFCVTDTGKGIPDEQKHEIFNRFVKLDSFVQ----GAGLGLSICQSLVKRMGGKIGVES 552 Query: 797 TPAKGTLIEIIFP 809 +G+ P Sbjct: 553 REGEGSCFWFTHP 565 >gi|227552547|ref|ZP_03982596.1| histidine kinase [Enterococcus faecium TX1330] gi|257888222|ref|ZP_05667875.1| histidine kinase [Enterococcus faecium 1,141,733] gi|257896890|ref|ZP_05676543.1| histidine kinase [Enterococcus faecium Com12] gi|293378480|ref|ZP_06624643.1| PAS domain S-box [Enterococcus faecium PC4.1] gi|227178296|gb|EEI59268.1| histidine kinase [Enterococcus faecium TX1330] gi|257824276|gb|EEV51208.1| histidine kinase [Enterococcus faecium 1,141,733] gi|257833455|gb|EEV59876.1| histidine kinase [Enterococcus faecium Com12] gi|292642809|gb|EFF60956.1| PAS domain S-box [Enterococcus faecium PC4.1] Length = 611 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 93/367 (25%), Positives = 173/367 (47%), Gaps = 39/367 (10%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 ME E +L S+L +DG+ +R G +++ N L E+ + + L+ Sbjct: 256 MEAERNRLDSVLSHMTDGVIATDRRGKVITINDMAVSLLDVKNEEAIGQSILTLLDIEEE 315 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYSLTMHDIS 562 + L ++L L++ T ST E + LR+ I ++ F S +HD++ Sbjct: 316 ----YTLRKLLEDPNEMVLDRST--STLESDQMILRVDFSMIRRESGFISGLVAVLHDVT 369 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQRFGP 617 E EK + +F++ VSHE+RTPLT++ + E + K++ P Sbjct: 370 E--------------QEKTERERREFVSNVSHELRTPLTSMRSYIEALSEGAWKDEEVAP 415 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 +++ +D + ++ ++NDLL++S++++G L E V+ +E V+ + + Sbjct: 416 ----NFLKVT--LDETDRMIR-MINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRFDM 468 Query: 678 YA--NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 EK IR F + D + Q+ NI++NAI ++P GG I T N Sbjct: 469 MVGNQEKNYKIRREFTQRDLWVEVDTDKIIQVVDNIMNNAIKYSPDGGTITCRLLETHNN 528 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 VIL + D G+G+ +L + + F ++ ++ GTGLGL +++ ++ A+ G + Sbjct: 529 -VILSITDQGLGIPKKDLNRVFERFYRVDKARARAQGGTGLGLAISREVIKAHRGAIWAE 587 Query: 796 STPAKGT 802 S KG+ Sbjct: 588 SKEGKGS 594 >gi|121725857|ref|ZP_01679157.1| sensor histidine kinase LuxQ [Vibrio cholerae V52] gi|121631622|gb|EAX63990.1| sensor histidine kinase LuxQ [Vibrio cholerae V52] Length = 857 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 88/319 (27%), Positives = 154/319 (48%), Gaps = 17/319 (5%) Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS------SCYSLTMH--DI 561 NH+L EIL L T+ K G + + + + S S+ DI Sbjct: 397 NHFLFEILERQLLPTITKAAQGDNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDI 456 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 + + + + A++ AE+ + +++FLA++SHE+RTPL ++G S+++K PL N Sbjct: 457 TTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT---PL-ND 512 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 E+ + SG +L ++ND+LD S++E GK + L E V + + NE Sbjct: 513 EQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNE 572 Query: 682 KRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EV 737 K + L+ S + +D + QI N+L+NAI FT G I + + ++ Sbjct: 573 KGLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGDPLAQL 631 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 +++V DTG+G+ +L +PF Q ++ G+GLGL + ++V+ G+ ++ S Sbjct: 632 VIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSE 691 Query: 798 PAKGTLIEIIFPLYDTSHP 816 GT EI P+ P Sbjct: 692 YGIGTRFEIQLPIELVEKP 710 >gi|320535487|ref|ZP_08035593.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Treponema phagedenis F0421] gi|320147679|gb|EFW39189.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Treponema phagedenis F0421] Length = 514 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/275 (28%), Positives = 134/275 (48%), Gaps = 15/275 (5%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y + ++DI++ KQ + K+ K FLA VSH+IRTP+ IIG E+++ Sbjct: 101 YFIILNDITQQKQHDKLVQSEKEETIKSKKIHKQFLANVSHDIRTPIQTIIGMMELLRTT 160 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + + EY I+ S ++L++VND+LD SK+E G M P L + +I Sbjct: 161 KL----DQEQKEYIRQINFSAEILLELVNDILDFSKLEVGSMQFENIPFDLVSLMESSID 216 Query: 674 LVQLYANEK--RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII-ISTT 730 + + ++K IL+ S A N P + D +KQI LN++ NA+ FT G + + Sbjct: 217 FIAIEGHKKGLEILLNMSPALN-PYFIGDPSRLKQILLNLMKNAVKFTEKGSVTVDVFEA 275 Query: 731 HTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 +++ + + DTG+G+T+ + EK F Q S R GTGLGL ++K + Sbjct: 276 ELPDKDGKAMPALYFEIADTGIGITDEQKEKLFTVFYQTEASVSRRFGGTGLGLAISKNI 335 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 + G+ + G++ P+ + +C Sbjct: 336 IKMLNGEIGVKDNKPHGSIFWFKLPMMQ-AKKQEC 369 >gi|302337068|ref|YP_003802274.1| multi-sensor signal transduction histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301634253|gb|ADK79680.1| multi-sensor signal transduction histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 1052 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 107/367 (29%), Positives = 176/367 (47%), Gaps = 36/367 (9%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 + E +SD I+ GI L + A +L GY E++L + + Sbjct: 605 LAENSSDMISQHAPGGIYLYVSPACIRLLGYEQEELLGRQVEEIIHPE------------ 652 Query: 517 LSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH- 573 D+ + +E K LGS E ++ +L I+K S + T H QE +S Sbjct: 653 ---DIERVIEIGKNHLGSPSE-RITTLVYRIQKKDGSYTWFET-HSRRTDSQEIIAISRD 707 Query: 574 -AKKIA-----EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 +++IA E+ + KS FLA +SHEIRTPL A++GF+++I +P+ EYA Sbjct: 708 ISERIAMERGLEEANKAKSMFLANMSHEIRTPLNAVLGFNDLIARNT----SDPKLKEYA 763 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 ID SG +L ++ D+LD SK+E+G + +++ S V E I+L ++ A ++ I + Sbjct: 764 AQIDLSGKNLLTLIGDILDFSKVEAGGVQFNYDFFSPHHLVREIIALFEMEAKKRGIDLI 823 Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEE----VILRV 741 T IP+ I D V+QI +N++SNA+ FT G + I + ++ + V Sbjct: 824 TKERTPIPKQIKLDEDRVRQILINLVSNALKFTEKGSVCLEIHAAYIKQKDQRCNLTFSV 883 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ E + F Q + GTGLGL ++K + + G + S G Sbjct: 884 IDTGIGIPEKEQHVIFEAFRQQEGQSTRKYGGTGLGLAISKNLAEGMEGSIDVKSNVGSG 943 Query: 802 TLIEIIF 808 + + F Sbjct: 944 STFTLSF 950 >gi|261410065|ref|YP_003246306.1| multi-sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] gi|261286528|gb|ACX68499.1| multi-sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] Length = 609 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 94/370 (25%), Positives = 173/370 (46%), Gaps = 38/370 (10%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L SIL SDG+ + G ++ NR ++ G E++ H Sbjct: 262 KLASILTNMSDGVIATDEAGRVILMNRRAGEMLGVEGEEL----------------AGHD 305 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISEWKQE---K 568 + +L L+ ++ E + G + KLL + PF + T +H ++E Sbjct: 306 IVSLLGLEESES-EALARGEGHDSKLLEITPREGGEPFMMRVTFTPIH-----RREIGIT 359 Query: 569 NKLSHAKKIAEKE--SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN----PR 622 ++ + + E+E + + +F+A VSHE+RTPLT I ++E +++ G L + PR Sbjct: 360 GTIAVLQDVTEQEKLEASRREFVANVSHELRTPLTTIKSYTEALED---GALEDKQMGPR 416 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 ++ I ++ +V DLL +S+++S + LH E + E + + +K Sbjct: 417 FV---GVIQNETGRMIRLVTDLLHLSRLDSKEAALHKERTDIVEMLEDVEDRFSFQMKQK 473 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 I + + D + Q+ N++SNA+ +TP GG I + + T + L V+ Sbjct: 474 HIRTIIEVKPGVSTAMLDRDGIDQVLDNLISNALKYTPDGGTITMDASITEEGMLSLSVK 533 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ +L++ + F ++ ++ GTGLGL +A+ +V A+ G + S KGT Sbjct: 534 DTGIGIPKKDLDRIFERFYRVDKARTRNLGGTGLGLSIAREIVRAHGGFITLQSELEKGT 593 Query: 803 LIEIIFPLYD 812 + PL D Sbjct: 594 TVTFTLPLDD 603 >gi|169832041|ref|YP_001718023.1| multi-sensor signal transduction histidine kinase [Candidatus Desulforudis audaxviator MP104C] gi|169638885|gb|ACA60391.1| multi-sensor signal transduction histidine kinase [Candidatus Desulforudis audaxviator MP104C] Length = 571 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 118/229 (51%), Gaps = 3/229 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 + DF+A VSHE+RTPLT+I G E + + RY+ A+ N +V DL Sbjct: 343 RRDFVANVSHELRTPLTSIQGIIEGLIDGVIPAAEAGRYLRVAHGESLRMN---RLVQDL 399 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD++ +E+G+ + V L E + +Q +EK + IR ++P +LA+ + Sbjct: 400 LDLAALEAGRADWELHAVELGEILDRVEIRLQAPRSEKGLAIRREVPPDLPPLLANENRL 459 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +Q+ N++ NA+ F+P GG+I ++ + + + VRD G G+ +L F ++ Sbjct: 460 EQVLTNLVENAVRFSPPGGEITVAAEKRPHNRITVTVRDQGPGIPPEDLPHVWDRFYRVE 519 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 S+ GTGLGL + K +V+A G+ + S+P +G P D+ Sbjct: 520 KSRARETGGTGLGLAIVKQIVEAQGGEVAVESSPGEGASFFFTLPAADS 568 >gi|254245733|ref|ZP_04939054.1| Signal transduction histidine kinase [Burkholderia cenocepacia PC184] gi|124870509|gb|EAY62225.1| Signal transduction histidine kinase [Burkholderia cenocepacia PC184] Length = 1220 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/258 (30%), Positives = 128/258 (49%), Gaps = 4/258 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L DI K+ A+ AE+ ++ K +FLA VSHE+R+PL I G++ V+ R Sbjct: 820 LAFQDIDALKRALGTAQSARDEAERANTAKDNFLALVSHELRSPLNVISGWAAVLMTARE 879 Query: 616 GPLGNPRYI--EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + + I R L ++++DLLD+S+I SG+ +L +PV AV + Sbjct: 880 RGVSTDEEMSQRAVTTILRHCQLQAELIDDLLDVSRISSGRFSLDTKPVDFAAAVRTVVE 939 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + A +K+I + ++ + D R ++Q+A N+L NA+ FTP GG++ ++ T Sbjct: 940 SNRPAAEKKQITLVSAGLQGRAIVSGDARRLQQVASNLLGNALKFTPDGGRVEVALTQLG 999 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 V L V D G+G+ L + F Q ++ G GLGL + K +V A+ G Sbjct: 1000 T-LVELSVTDNGIGVKAELLPRLFDRFMQSDITRTRNYGGLGLGLSIVKHLVSAHGGTVT 1058 Query: 794 IFS-TPAKGTLIEIIFPL 810 S +GT + + PL Sbjct: 1059 ASSEGEGRGTRLTVRLPL 1076 >gi|124009081|ref|ZP_01693764.1| PAS [Microscilla marina ATCC 23134] gi|123985295|gb|EAY25215.1| PAS [Microscilla marina ATCC 23134] Length = 1290 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 89/267 (33%), Positives = 145/267 (54%), Gaps = 25/267 (9%) Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 K P+ YSL DI+ K+ + +L AK+ AE+ + K FL+ +SHEIRTP+ A+IG Sbjct: 878 KAPYILGYSL---DITARKRFERELITAKQKAEEAALAKEQFLSTMSHEIRTPMNAVIGM 934 Query: 607 SEVI--KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 + V+ R L N + +++ S +L ++ND+LD +KI++GK + FE V Sbjct: 935 THVLLENKPRVDQLENLKILKF------SAQTLLSLINDILDFTKIDAGK--VEFEEVLF 986 Query: 665 DEAVSEAISLVQ----LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFT 719 D + E I +Q A EK I ++ S NIP +++ D + Q+ N+++NAI FT Sbjct: 987 D--LPELIESIQKSFAFTAQEKNIQLKFSTDTNIPHKVIGDPVRLTQVLTNLMNNAIKFT 1044 Query: 720 PSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRG-EGTG 775 G ++++ +N +V LR V+DTGVG+ + + F Q N + IR GTG Sbjct: 1045 LKGEVKLMLQLITQNNRQVQLRFTVKDTGVGIPKEKQQIIFDRFTQ-ANPETIRKFGGTG 1103 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGT 802 LGL + K +++ + ++ S KG Sbjct: 1104 LGLAIVKRLLELQDSQIHLESEENKGA 1130 >gi|238789934|ref|ZP_04633714.1| Signal transduction histidine-protein kinase atoS [Yersinia frederiksenii ATCC 33641] gi|238722007|gb|EEQ13667.1| Signal transduction histidine-protein kinase atoS [Yersinia frederiksenii ATCC 33641] Length = 593 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 94/367 (25%), Positives = 177/367 (48%), Gaps = 46/367 (12%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ---NTPSV----- 508 ILE+ +DG+ ++ +G + N A + GY ++++ KP+ E+ ++P + Sbjct: 252 ILESAADGVISVDIKGCVTMINPAGEIITGYSRKELIGKPYAEVFEKVDFDSPVLDTLFR 311 Query: 509 -MNHYLTEI----LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 + H EI + ++ ++ L + + E L +L I D++ Sbjct: 312 GIKHVALEIDYPGKNRTIQLSISTSQLRNAQGETLGALAI--------------FTDLTA 357 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K+ + ++ A+++A + +A V+HE+R PLTAI GF +++K+ +P+ Sbjct: 358 KKEVQRRIEQAERLAT-----LGELMAGVAHEVRNPLTAISGFVQILKDSE----KDPQR 408 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 +EY + I + + ++ LLD S+ G+ + V+L++ + E++ LV+ E R Sbjct: 409 LEYTHIILKEVQSINRVIQQLLDFSRPRIGR----YHQVNLNQIIRESLILVKTKGVEAR 464 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + N+ I AD +KQ+ LNIL NA+ + G+IIIST + + ++D Sbjct: 465 VDFHVQLDENLSDIEADGELLKQVLLNILINAVQSIVARGEIIISTQALDDNYQQITIQD 524 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 G G+ K PF + GTGLGL +++ ++ ++ G + S P KGT Sbjct: 525 NGCGIAEDIKAKVFDPF------YTTKPSGTGLGLSISQRIIASHDGDIRLESQPNKGTT 578 Query: 804 IEIIFPL 810 II P+ Sbjct: 579 FIIILPV 585 >gi|325104431|ref|YP_004274085.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] gi|324973279|gb|ADY52263.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] Length = 1146 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/238 (33%), Positives = 128/238 (53%), Gaps = 7/238 (2%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 KN LS + E+ S +KS+FLA +SHE+RTPL +I+ ++++K + G L +YA Sbjct: 473 KNTLSIKMQELEQASKYKSEFLANMSHELRTPLNSILILAKILKENKKGHLSEDE-TKYA 531 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + I R+G +L ++ND+LD+SKIESG + L+ E +S+ + + L AN K + Sbjct: 532 SVIHRAGGDLLSLINDILDLSKIESGFIELNPENLSVADLEDDLKQLFDEVANTKGVNFV 591 Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VRDT 744 +P I D ++QI N+LSNA FT G + + H S ++ LR V+DT Sbjct: 592 IERDPKLPETIYVDRLRIEQILKNLLSNAFKFTSKEGTV---SVHMSEKDDFLRFSVKDT 648 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G+ + + + F Q S GTGLGL +++ + G + S KG+ Sbjct: 649 GIGIPEDKQKIIFEAFQQADGSTNREYGGTGLGLSISRELSKLMDGHISLKSEVGKGS 706 >gi|229029709|ref|ZP_04185782.1| hypothetical protein bcere0028_17940 [Bacillus cereus AH1271] gi|228731597|gb|EEL82506.1| hypothetical protein bcere0028_17940 [Bacillus cereus AH1271] Length = 444 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/251 (33%), Positives = 124/251 (49%), Gaps = 13/251 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E + + L+H E+ K++F+A VSHEIRTPLT I G+SE +K L Sbjct: 205 GELGELAHSLNHMSNKIEQAEQMKNEFIASVSHEIRTPLTGIKGWSETLKT--VDHLTEE 262 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + I + ++ +V +LLD S+++S NL+ + V L + + E I + A E Sbjct: 263 EIKQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEE 322 Query: 682 KRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K++ F I RI + D +KQ+ LNI+ NAI ++ G++ I T + VI Sbjct: 323 KQM----QFIKTIERIELMGDRNKLKQVFLNIVQNAIKYSHKNGKVYIEATKNEGQAVI- 377 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 +V+D GVG+ L + F QI N G GLGL + K MV+ + G S Sbjct: 378 KVKDEGVGIAKEHLPYIEQSFYQINN----HATGAGLGLAIVKKMVELHGGTLSFISKEG 433 Query: 800 KGTLIEIIFPL 810 GT I I PL Sbjct: 434 IGTTILIKLPL 444 >gi|158321803|ref|YP_001514310.1| multi-sensor signal transduction histidine kinase [Alkaliphilus oremlandii OhILAs] gi|158142002|gb|ABW20314.1| multi-sensor signal transduction histidine kinase [Alkaliphilus oremlandii OhILAs] Length = 607 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 96/366 (26%), Positives = 168/366 (45%), Gaps = 22/366 (6%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E +L +I+ +DGI +EG IL N ++ + + F + Sbjct: 256 EKQKLDTIITYMADGIIAATKEGEILHVNPKAMEMLNIEEGQLAPRNFNEIFKPYDEEFE 315 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569 YL E+ Q + + G E S I + L + D++ Sbjct: 316 MDYLLEMSENQTGQRMLYVEDGVILEA---SYAPFINENGALGGIILLLQDVTS------ 366 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY-IEYAN 628 A+K + + +F+A VSHE++TPLT I ++E + + G L N + Sbjct: 367 --------AQKLENMRKEFVANVSHELKTPLTTIKSYTETLLD---GVLENTELATSFLQ 415 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 +D + +V DLL +S ++ K N + + V+L+E + +I + + A K I T Sbjct: 416 VVDGEAERMARLVRDLLQLSNLDYKKSNWNKKEVNLNEIIENSILKIDVSAKNKAQEIIT 475 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + I AD ++Q+ LNILSN+I +TP GG+II+ V L++RDTG+G+ Sbjct: 476 HLQDEPVHIYADKDRIEQVILNILSNSIKYTPEGGRIIVDLI-VDEGVVTLKIRDTGIGI 534 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 ++ + + F ++ ++ GTGLGL +AK +++A+ G IFS GT + Sbjct: 535 PKEDIARIFERFYRVDKARSREMGGTGLGLSIAKQIIEAHEGTIEIFSEEGHGTEVHTKL 594 Query: 809 PLYDTS 814 P+ + + Sbjct: 595 PVTEIT 600 >gi|220909483|ref|YP_002484794.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219866094|gb|ACL46433.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1331 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/268 (28%), Positives = 144/268 (53%), Gaps = 12/268 (4%) Query: 555 SLTMHDISEWKQEKNKLSHAKKI----AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 +L +HD E +++++++ ++ AE+ + K +FL+ +SHE+R+PL I+G+++++ Sbjct: 931 TLDIHDKQELERQRDQVLQQAQVAQEEAERANRIKDEFLSILSHELRSPLNPILGWAQLL 990 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + L + I+ + L +V+DLLD+++I GK++L PV+L ++ Sbjct: 991 Q---IKTLDQTTTKQALATIEHNAKLQTQLVDDLLDVARILRGKLSLQEAPVNLVSVIAA 1047 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 A+ +V+ A+ K + ++ +I ++ D ++QI N+LSNAI FTP+GG++ I Sbjct: 1048 ALEVVKTAADVKSVTLQPEL-TDIGQVRGDEARLQQIVWNLLSNAIKFTPTGGRVTIRLE 1106 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 ++ I V DTG+G+ L + F Q S + G GLGL + K +V+A+ G Sbjct: 1107 QVEDQAQIT-VTDTGIGIQPQFLPHIFESFRQQDTSISRQYGGLGLGLSIVKYLVEAHGG 1165 Query: 791 KFYIFSTPA--KGTLIEIIFPLYDTSHP 816 +P +G + PL + P Sbjct: 1166 TI-TAESPGENQGATFTVQLPLLKAASP 1192 >gi|94267582|ref|ZP_01290931.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93451940|gb|EAT02659.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 399 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 131/253 (51%), Gaps = 17/253 (6%) Query: 563 EWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 E ++ +L A AE+ + KS+FLA +SHEIRTP+ +IG + ++ ++ Sbjct: 137 ELRESNRRLEEAAVQAEELARQAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLSEDL 196 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + Y I SG +L+++N +LD SKIE+G++ L + P S E V E + L+ Sbjct: 197 ----TAEQLSYVKVIITSGEALLELINQILDFSKIEAGRLELDYRPFSPRELVQEVVLLL 252 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 Q A + + + + ++P I+ D ++Q+ LN++ NAI FT GG I + ++ Sbjct: 253 QPQAAAQNLALTCEISPSLPAIVEGDPVRLRQVLLNLVGNAIKFTEVGGVAIELSPAPAD 312 Query: 735 EEVI-----LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 V+D+G+G+ +++ + F Q+ S + GTGLGL + + +V+ Sbjct: 313 PAAPDFSCHFAVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGLGLAICRRLVELMG 372 Query: 790 GKFYIFSTPAKGT 802 G+ + S KG+ Sbjct: 373 GEVGVESEVGKGS 385 >gi|329955377|ref|ZP_08296285.1| PAS domain S-box protein [Bacteroides clarus YIT 12056] gi|328525780|gb|EGF52804.1| PAS domain S-box protein [Bacteroides clarus YIT 12056] Length = 624 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 87/271 (32%), Positives = 139/271 (51%), Gaps = 29/271 (10%) Query: 549 PFSSCYSLTM--HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 P +C L +DI+ K + L AK+ AE+ KS FLA +SHEIRTPL AIIGF Sbjct: 366 PEQNCIELICINYDITRLKDTEAMLILAKEKAEESDRLKSAFLANMSHEIRTPLNAIIGF 425 Query: 607 SEVIKNQRFGPLGNPRYIE-------YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 S ++ YIE Y I+ + L+L+I+ND+LD+SKIE+G + L Sbjct: 426 SGLLP-----------YIEDAEERDRYIALINHNNELLLNIINDVLDLSKIEAGHIELSP 474 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHF 718 ++L + + E+ + Q E + ++T + IPR++ D +KQ+ N++SNA+ Sbjct: 475 VWLNLSDLIDESCTECQRNVPEG-VTLKTRYP-AIPRLIEQDPMRIKQVLSNLVSNALKN 532 Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 T G + + T E + V DTG G+ +L + F + + Q G GLGL Sbjct: 533 TTQG--YVEISYETGQSEARISVSDTGCGIPQEKLGVIFERFEKTDSFVQ----GAGLGL 586 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + K++V+ G+ + S +G+ + FP Sbjct: 587 SICKSIVEHMNGRIEVISAVGEGSTFTVTFP 617 >gi|315187538|gb|EFU21294.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM 6578] Length = 900 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/263 (29%), Positives = 132/263 (50%), Gaps = 25/263 (9%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + +L A ++ EK + KS+FLA VSHE+RTPL AI+GF+E +K ++ +PR Sbjct: 383 EVARRTRELREANRLLEKANRAKSEFLANVSHEMRTPLHAIMGFAEALKGEQ-----DPR 437 Query: 623 YIEYANYIDRSGNLVL---------DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 +R G+L L +++++LD+ K+E GK+ L P +L E V Sbjct: 438 --------EREGHLQLLLSEAQRLKVLIDEILDVEKMEQGKLTLDESPFNLHEVVGYVCR 489 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH 731 +++ A K + + +P ++ D ++Q+ +N++ NA+ FT GG ++ + Sbjct: 490 VMEENARRKGLSFSFEIEDGVPVWVVGDPFRLQQVLMNLVGNAVKFTEEGGVRVRVGCVE 549 Query: 732 TSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 I + VRDTG+G+ EK + F Q S R G+GLG+ +A+ +V G Sbjct: 550 EGEGRWIEVEVRDTGIGIPEEMREKVFESFVQGDTSTTRRYGGSGLGMTIARELVRLMGG 609 Query: 791 KFYIFSTPAKGTLIEIIFPLYDT 813 + S KGT + P + Sbjct: 610 DIGLESEVGKGTRVWFRIPCVEA 632 >gi|188583112|ref|YP_001926557.1| multi-sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179346610|gb|ACB82022.1| multi-sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 920 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/257 (30%), Positives = 128/257 (49%), Gaps = 8/257 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + + L AK+ A++ ++ KS FLA +SHEIRTP+ ++ +E++ + PR Sbjct: 252 EIRLRTHDLIEAKQSADEANAAKSVFLATMSHEIRTPMNGMLVMAELLASAEL----PPR 307 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 YA I RSG +L I+ND+LD +K+ESG++ + P+S + ++L A Sbjct: 308 QQRYAQVIARSGQSLLAIINDILDFAKVESGRLEVERIPLSPRDVADTVVTLFAERAASA 367 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL-- 739 + + ++PR +L D + Q+ N +SNA+ FT +G ++ T S +L Sbjct: 368 GLDLAAQIDGDVPRSLLGDPVRLGQVLGNFVSNALKFTAAGHVLVRMTMEASASGPVLCI 427 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ L F Q S R GTGLGL +A+ ++ A G + S Sbjct: 428 AVSDTGIGIPEDRLAGIFTAFTQADQSIARRFGGTGLGLSIAERLIAAMGGCVGVESRLG 487 Query: 800 KGTLIEIIFPLYDTSHP 816 G+ P D + P Sbjct: 488 AGSTFWARIP-ADGADP 503 >gi|94264431|ref|ZP_01288220.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455121|gb|EAT05343.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 399 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 120/231 (51%), Gaps = 10/231 (4%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A+ + KS+FLA +SHEIRTP+ +IG + ++ ++ + Y I SG + Sbjct: 159 AQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLSEDL----TAEQLSYVKVIITSGEAL 214 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L+++N +LD SKIE+G++ L + P S E V E + L+Q A + + + + IP I Sbjct: 215 LELINQILDFSKIEAGRLELDYRPFSPRELVQEVVLLLQPQAAAQNLALTCEISPGIPAI 274 Query: 698 L-ADLRSVKQIALNILSNAIHFTPSGGQII-----ISTTHTSNEEVILRVRDTGVGMTNY 751 D ++Q+ LN++ NAI FT GG I + V+D+G+G+ Sbjct: 275 AEGDPVRLRQVLLNLVGNAIKFTEVGGVAIELSPAPADPAAPEFSCYFAVKDSGIGIPAE 334 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +++ + F Q+ S + GTGLGL + + +V+ G+ + S KG+ Sbjct: 335 KIDLLFQRFQQLDGSTCRKYGGTGLGLAICRRLVELMGGEVGVESEVGKGS 385 >gi|332701444|ref|ZP_08421532.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332551593|gb|EGJ48637.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 697 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/248 (33%), Positives = 128/248 (51%), Gaps = 8/248 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++ +Q++ L AK+ AE S KS+FLA +SHEIRTPL I+G +E++ + G Sbjct: 288 RDVTRIRQQEQMLRKAKEEAEMASRAKSEFLASMSHEIRTPLGGILGMTELLMARVAGD- 346 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N Y+E I+ S +L I+ND+LD+SKIE+GK++L E E + ++ Sbjct: 347 SNQSYLE---LIENSAMSLLGILNDILDLSKIEAGKVDLEPEEFEFREEMLTLAEPFRIQ 403 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS-TTHTSNEE 736 A + + IP R+ DL +KQI N+LSNA+ FT GG + + ++ Sbjct: 404 AEKSGLSFDVRLDPAIPERMHGDLEKLKQILRNLLSNAVKFTVKGGVTLTTDLADKCGDQ 463 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 LR V DTG+G+ ++ F Q+ + GTGLGL ++K + G + Sbjct: 464 CRLRFTVSDTGIGIPRHKQRSLFGMFEQLRDHMSKNCAGTGLGLAISKRLAGMLGGDISL 523 Query: 795 FSTPAKGT 802 S G+ Sbjct: 524 ESEKGLGS 531 >gi|332528037|ref|ZP_08404070.1| histidine kinase-like protein [Rubrivivax benzoatilyticus JA2] gi|332112610|gb|EGJ12403.1| histidine kinase-like protein [Rubrivivax benzoatilyticus JA2] Length = 1055 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/267 (29%), Positives = 142/267 (53%), Gaps = 26/267 (9%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL-TAIIGFSEV-IKNQRFGP 617 DI+ +Q +L A++ A++ + KS F+ +SHE+RTP+ T ++G + + ++ G Sbjct: 307 DIAAREQAGRELQLAREEADEANEAKSRFVRNMSHEMRTPMNTIVLGLTHLSLQTDLSG- 365 Query: 618 LGNPRYIEYANYIDRS---GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 E +++D++ ++L ++ND+LD SKIE+G+M + SL+E V +A+ L Sbjct: 366 -------EQRDFVDKAQAASRMMLALINDVLDFSKIEAGRMTIESARFSLEEVVGQAVEL 418 Query: 675 VQLYANEKRILIRTSFANNIPRILAD---LRS----VKQIALNILSNAIHFTPSGGQIII 727 V+ A K + + +A+ P +L D LR ++Q+ N+LSNA+ FT G + Sbjct: 419 VRQPAQHKELELLCDWAD--PSLLVDRGTLRGDALRLQQVLTNLLSNAVKFTSRGQVRLT 476 Query: 728 STTHTSNEEVI----LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + TS ++ + L V DTG+GM+ ++ + F Q S GTGLGL + + Sbjct: 477 VDSATSGDDAVVDLLLVVEDTGIGMSAEQIGHLFREFAQADVSITRHYGGTGLGLAITRR 536 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL 810 +V+ G + S P G+ E+ L Sbjct: 537 LVELMGGTIAVRSEPGVGSRFEVRLTL 563 >gi|260778315|ref|ZP_05887208.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC BAA-450] gi|260606328|gb|EEX32613.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC BAA-450] Length = 591 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 96/316 (30%), Positives = 165/316 (52%), Gaps = 17/316 (5%) Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGST---KEEKLLSLRIIIKKLPFSSCYSLTMHDI 561 T S +N YL + ++ RQ +E + + K+ L + ++ L + +H I Sbjct: 39 TYSRLNIYLADFVAEVQRQQIEFLDFKESFYNKQYVYLGIILLCSMLMIGVISWMYLHQI 98 Query: 562 SEWK--QEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 K +E+ K + AK+ AE+ S K+ FLA +SHE+RTPL AIIG S+ + + Sbjct: 99 RLSKDLEERTKVMEEAKRNAEQSSIAKARFLANMSHEMRTPLNAIIGLSQ----KEYYQS 154 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + + + I+ SG +L ++N++LD+SKIE GK L + + E + +S Sbjct: 155 SDEQTRHFLSMINSSGEHLLKLINNVLDLSKIEQGKSKLDSDEFFISELID--VSKTVFI 212 Query: 679 ANEKRILIRTSFANNIPR---ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 +K+ + F+ ++ R I +D + QI N+ NA+ FT SG +I IS + S Sbjct: 213 NFDKQQAVDVFFSVSLDRNYKIKSDKTKLVQIINNLGYNALKFTESGHVEIHISLSSESG 272 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 I+ V+DTG+GMT +L+K + F Q +S + GTGLGL + +++V+ G + Sbjct: 273 MLHIV-VKDTGIGMTQEQLDKVFQEFTQADDSITRKYGGTGLGLSICQSLVNLLGGAISV 331 Query: 795 FSTPAKGTLIEIIFPL 810 S+ +G+ I P+ Sbjct: 332 ESSLGEGSEFSIEVPV 347 >gi|57235028|ref|YP_180886.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes 195] gi|57225476|gb|AAW40533.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes 195] Length = 581 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 94/361 (26%), Positives = 171/361 (47%), Gaps = 33/361 (9%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT-VFLEQNTPSVMNH 511 +L ++LE DGI +++ EG I N A ++F E ++ F + S+ H Sbjct: 250 RLSAVLERMGDGIFLLDCEGTISLLNPAAERIFKLEAEHVIGHSFVEAIRDHEIHSIFEH 309 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 + +Q + + L S + L II L S Y + + D+SE + +L Sbjct: 310 SKS-----SGKQEMGFVELASGRR----FLGIIATPLVSQSGYLVLVQDLSELR----RL 356 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK-NQRFGPLGNPRYIEYANY- 629 ++ DF+A +SHE+RTP++++ +E ++ +IE + Sbjct: 357 EKVRR----------DFVANISHELRTPISSLKLLTETLQEGAASDAAVAAGFIEKIHLE 406 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 +D+ LV +L D+S IESG+ L+ +P + A+ A + + A I + Sbjct: 407 VDKLAQLV----TELSDLSAIESGQAVLNLQPGDISTAIKLAAARLSPQAERAGISLGVE 462 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 +P++ D ++Q+ +N++ NAI FTP GG+I I T + +++ V D+G+G+ Sbjct: 463 LPETLPQVKLDENRIEQVLVNLVHNAIKFTPKGGRIKIG-ARTQGQILVVYVSDSGIGIP 521 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L + + F ++ ++ G GTGLGL ++K +V A+ G + S KG P Sbjct: 522 EDDLTRVFERFYKVDKARS--GGGTGLGLAISKHIVQAHGGNIWAESRYGKGATFSFSLP 579 Query: 810 L 810 L Sbjct: 580 L 580 >gi|302382808|ref|YP_003818631.1| integral membrane sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302193436|gb|ADL01008.1| integral membrane sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 761 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/266 (30%), Positives = 129/266 (48%), Gaps = 14/266 (5%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 ++DI++ K++ L+ A+ AE + KS+FLA +SHEIRTPL +IG ++ + Sbjct: 357 VNDITDLKRDAQALAEARDTAETANRAKSEFLANMSHEIRTPLNGVIGLTQALARTEL-- 414 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + E N I SG + +++D+LD++++ESG++ + EP L A++EA L Sbjct: 415 --DHDQREILNLIQSSGVTLQTLLSDILDLARVESGRLEIADEPFDLARAINEAAHLYGA 472 Query: 678 YANEKRILIRTSFANNIPR----ILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHT 732 A EK + F + P + D+ +KQ+ N++SNA+ FT G + + Sbjct: 473 PAAEKGLQF---FVDIDPAAEGWVRGDVVRLKQVLTNLVSNAVKFTAKGFVSLNAAVGRD 529 Query: 733 SNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + ILR V DTGVG + F Q + R GTGLGL + + + D G Sbjct: 530 RDGAAILRFTVEDTGVGFDAEAKARLFTRFEQADGTITRRFGGTGLGLAICRQLADMMGG 589 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHP 816 S G+ + PL P Sbjct: 590 HLDCESEAGGGSTFILTLPLIAAEAP 615 >gi|329923873|ref|ZP_08279236.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paenibacillus sp. HGF5] gi|328941046|gb|EGG37350.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paenibacillus sp. HGF5] Length = 893 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 81/262 (30%), Positives = 134/262 (51%), Gaps = 20/262 (7%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 +AK++ EK S +KS FLA +SHE+RTPL +++ S+++ + G L YA I Sbjct: 486 YAKEL-EKSSKYKSQFLANMSHELRTPLNSMLILSQILAENKQGNLTEEEQ-HYATVIHN 543 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY----ANEKRILIRT 688 SG+ +L+++ND+LD+SK+E+GKM + + V+L +E L+Q Y A K + Sbjct: 544 SGSELLNLINDILDLSKVEAGKMQIEMDLVNL----TELPELMQGYFSKSAESKNLEFDI 599 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---------QIIISTTHTSNEEVI 738 ++++P ++ +D + QI N+LSNAI FT SG I+ S S + + Sbjct: 600 EMSDDLPDMMYSDGMRLHQILRNLLSNAIKFTESGSVKLRVKKMNSIVTSDFIISGDVIA 659 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG+G+ L+ + F Q + + GTGLGL ++ + G + S Sbjct: 660 FSVEDTGIGIAAEHLQPIFEAFQQGEETTARKFGGTGLGLSISLHLAKLLGGYITVESEE 719 Query: 799 AKGTLIEIIFPLYDTSHPHDCI 820 G+ + PL D + Sbjct: 720 GIGSTFILYLPLVTEGGEADSL 741 >gi|325917462|ref|ZP_08179671.1| multi-sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC 35937] gi|325536336|gb|EGD08123.1| multi-sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC 35937] Length = 1253 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/241 (33%), Positives = 121/241 (50%), Gaps = 10/241 (4%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP--LGNPRYIEYANYID 631 A+ AE S K +FLA +SHE+RTPL AI+G+S ++++Q F P L N I I+ Sbjct: 859 ARGQAEHASRVKDEFLATLSHELRTPLNAILGWSRLMQSQNFAPENLANGLVI-----IE 913 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT-SF 690 RS I++DLLD+S I SGK+ L E + + L+Q A + I + + Sbjct: 914 RSARAQTQIIDDLLDMSAILSGKIRLQPEHFDIAGLARSTVELMQPAALAREIALELDAP 973 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 A + D ++Q+ N+LSNA+ FT SGG + + + + L V+D+G+G+ Sbjct: 974 AGSELWFFGDAGRLQQVLTNLLSNALKFTASGGNVRVGLD-VEDGRLRLCVQDSGIGIAP 1032 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 L F Q R G GLGL +++ +VD + G S KG L I+ P Sbjct: 1033 EFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEGKGALFTIVLP 1092 Query: 810 L 810 Sbjct: 1093 F 1093 >gi|300869454|ref|ZP_07114038.1| two-component sensor histidine kinase [Oscillatoria sp. PCC 6506] gi|300332546|emb|CBN59236.1| two-component sensor histidine kinase [Oscillatoria sp. PCC 6506] Length = 405 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 86/305 (28%), Positives = 165/305 (54%), Gaps = 19/305 (6%) Query: 521 LRQT----LEKITLGSTKEEKLLSLRIIIKKL--PFSSCY-SLTMHDISEWKQEKNKLSH 573 LRQ LE L ++ E + ++R+I L + C+ S + E +Q +++L+ Sbjct: 94 LRQVIFTHLEPELLTTSVPEVMRTMRLIDAVLDEAIAQCFKSYVDERLRELQQIQSQLTL 153 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI--KNQRFGPLGNPR-YIEYANYI 630 + + ++ + LA ++HE++TPL +IIG+SE+ K +R + + R IE+ + Sbjct: 154 TNQELNRLANANQETLAHLAHELKTPLNSIIGYSELFLRKEKRETEVRDTRPQIEHIERV 213 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--RILIRT 688 R+G +L +VND L++S+ E+G++ L P+++ ++ I +Q A++K +++++ Sbjct: 214 LRNGRQLLRLVNDALELSRAEAGQIKLRLIPINVISTINTVIETMQPLADDKGLKLILKN 273 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 +++P +I+ D +QI N++SNAI +T G I ++ +E + V+DTG+G Sbjct: 274 ---DSVPDKIITDPHRFQQILTNLISNAIRYTEVGS-IELNCELLPDERWSIAVKDTGIG 329 Query: 748 MTNYELEKAMKPFGQI--PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 + E+ +PF Q+ PN Q + TGLGL + +V GK + S G+ Sbjct: 330 IAPEHKEQIFEPFFQVGEPNRYQFPPDSTGLGLAIVSRLVTLLQGKIKLVSQVGVGSTFT 389 Query: 806 IIFPL 810 ++ PL Sbjct: 390 VMLPL 394 >gi|227537039|ref|ZP_03967088.1| possible two-component hybrid sensor and regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227243131|gb|EEI93146.1| possible two-component hybrid sensor and regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 720 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 122/230 (53%), Gaps = 3/230 (1%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + +KS+FLA +SHE+RTPL +I+ S ++ L N IE A I SG +L ++ Sbjct: 45 TKYKSEFLANMSHELRTPLNSILLLSRLMSENTEENL-NEDQIESAKVIQSSGTSLLSLI 103 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILAD 700 +++LD+SKIE+GKM L ++ V L + E SL EK + + ++ I D Sbjct: 104 DEILDLSKIEAGKMELEYQHVRLSDVTQELNSLFAPIVKEKSLDLNIVVQPDLDSTIETD 163 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKP 759 + Q+ N+LSNAI FT G + T SN ++ V+DTG+G+ + + + Sbjct: 164 RLRLDQVLRNLLSNAIKFTSKGSITLTITEEQSNRNNIVFAVKDTGIGIAEEKQKIIFEA 223 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F Q S + + GTGLGL +++ + G+ + S +G++ +I P Sbjct: 224 FQQADGSTRRKFGGTGLGLSISREIARLLGGEIRLQSKENEGSIFSLIIP 273 >gi|330843130|ref|XP_003293515.1| hypothetical protein DICPUDRAFT_42128 [Dictyostelium purpureum] gi|325076143|gb|EGC29955.1| hypothetical protein DICPUDRAFT_42128 [Dictyostelium purpureum] Length = 1374 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 96/338 (28%), Positives = 167/338 (49%), Gaps = 14/338 (4%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 ++ + +E + D + I + G I N A ++ G+ + L K F+ +E NT + + + Sbjct: 516 KMVTCIENSPDCVEIWDHSGHIQYLNLAFTETTGFARWEFLGKEFSSLIE-NTEIIPSMW 574 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK-QEKNKL 571 T ++ L +T S+ ++ + Y T D+++ K E++K Sbjct: 575 TTLTDKKTWNGFIKTRHLNNTVIYFDTSISPVLDQFQQILYYHCTKRDVTQKKIDEESKT 634 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 KI EK ++ +SH+IRTP++ IIG ++++ + PL N + + Y N I Sbjct: 635 LEQNKIIEKSRLR----ISMMSHDIRTPMSNIIGMADLLYD---TPLSNHQ-LHYLNIIK 686 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 S N +L+I+ND+LD+SKIE+GK+ + +E + VSE + + K + + + Sbjct: 687 NSSNTLLNIINDILDMSKIEAGKLEIEYERFDFNSTVSEVVESMAQRVQAKGLELLSYID 746 Query: 692 NNIPRILADLRS-VKQIALNILSNAIHFTPSGGQIIIS--TTHTSNEEVI-LRVRDTGVG 747 IP+ L S + QI N+L N++ FT G I T T +E VI + V+DTG+G Sbjct: 747 PKIPQTLVGPSSRLNQILTNLLGNSLKFTDKGEISIFCLLTDETDSEYVIRVEVKDTGIG 806 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + L K F Q + + G+GLGL + K +V Sbjct: 807 IKKEALPLLFKAFTQAEGTITRQYGGSGLGLAICKELV 844 >gi|308174101|ref|YP_003920806.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens DSM 7] gi|307606965|emb|CBI43336.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens DSM 7] gi|328552770|gb|AEB23262.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens TA208] gi|328912432|gb|AEB64028.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens LL3] Length = 593 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 99/361 (27%), Positives = 173/361 (47%), Gaps = 32/361 (8%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 QL +IL + +DG+ IN +G IL TN P E L+ + EQN MN Sbjct: 254 QLSNILSSMADGVITINIDGTILVTNP--------PAERFLQ---AWYYEQN----MNIK 298 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 + L + ++ + ST++E+++ + + + L M + + ++ Sbjct: 299 EGDNLPPEAKELFQNAV--STEKEQMIEMTLQ------GRSWVLLMSPLYAESHVRGAVA 350 Query: 573 HAKKIAEKESSHK--SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + + E+ K DF+A VSHE+RTP++ + G+SE I + + I Y Sbjct: 351 VLRDMTEERRLDKLREDFIANVSHELRTPISMLQGYSEAIVDDIASTEEEKKEIAQIIYD 410 Query: 631 D--RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + R G LV NDLLD++++ESG LH+E V+L E + + A EK + + Sbjct: 411 ESLRMGRLV----NDLLDLARMESGHTGLHYETVNLHEFLEKISRKFSGVAKEKGVSLTE 466 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 A + P + D ++Q+ N++ NA+ T SGG + I+ T + + + ++D+G G+ Sbjct: 467 DIAVSQPECVFDEDKMEQVFTNLIDNALRHTESGGSVHIA-AQTVKDGLKIDIKDSGSGI 525 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L + F + ++ GTGLGL + K +V+A+ G + S+ KGT Sbjct: 526 PEEDLPFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHGGSIAVHSSIDKGTAFTFYI 585 Query: 809 P 809 P Sbjct: 586 P 586 >gi|153870769|ref|ZP_02000098.1| two-component histidine kinase [Beggiatoa sp. PS] gi|152072765|gb|EDN69902.1| two-component histidine kinase [Beggiatoa sp. PS] Length = 1262 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 133/250 (53%), Gaps = 10/250 (4%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 TM D + ++ KL AK+ AE + KSDFLA +SHEIRTP+ IIG +++ Sbjct: 527 TMAD--DLQRSTRKLLTAKEQAELANKAKSDFLANMSHEIRTPMNGIIGLTQLALKTDL- 583 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 +Y +++ S +L I++D+LD SKIE+G + + SLD+ + S++ Sbjct: 584 ---TAEQQDYLTHLESSSQALLVIIDDILDFSKIEAGMLQMELVDFSLDKVLHHLFSVLG 640 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSN 734 + EK + + ++P ++ D + Q+ +N+++NAI FT G +I I + + Sbjct: 641 MRIEEKGLELLLDIDKSVPHYLIGDPLRLGQVLINLVTNAIKFTDQGEILIKIEMLNLTA 700 Query: 735 EEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 +++ L ++D+G+G++ + + F Q S + GTGLGL + K +V+ G Sbjct: 701 KQITLCFSIKDSGIGISPEAIAQLFDAFTQADTSTTRKFGGTGLGLAICKRLVEMMGGNI 760 Query: 793 YIFSTPAKGT 802 ++ S +G+ Sbjct: 761 WVESQLEQGS 770 >gi|78062490|ref|YP_372398.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383] gi|77970375|gb|ABB11754.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383] Length = 672 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 104/407 (25%), Positives = 172/407 (42%), Gaps = 36/407 (8%) Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 PE +P EP D+ + +++A+ D I ++ I S N A ++ Sbjct: 138 PEPVPATAREPVPDDSLLRH------------VVDASPDAIVGVDAARRITSWNPAARRI 185 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 FG + + P + H+ +L ++ + + + + R Sbjct: 186 FGIDAAQAAGRDVAAMI---APRWLRHHPLPASFANLHASVGPLDVLCVRRDGG-RFRAT 241 Query: 545 IKKLPF----SSC--YSLTMHDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLAR 591 P +C S+T+ D E ++ + A+ A+ + K + LA Sbjct: 242 FAAAPMVDTQGNCTGLSMTLRDAHERRRGERRNLRSLRGARDARAQADTSNRLKDELLAT 301 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 VSHE+RTPL I G+ EV++N G + + IDRS + +V DLLD S + Sbjct: 302 VSHELRTPLNVIYGWVEVLRNVD----GQGLAQQAVDAIDRSARSLSHMVADLLDASSLA 357 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +G++ L PV L V + + A + + T +A I AD V+Q+ N+ Sbjct: 358 TGRLRLERVPVDLVRVVRDTTRELDATAQASGLELSTHYAMPTCVIPADRERVRQVLSNL 417 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 LSNAI FTP GG+I++S + E V L V DTG G+ L + F + + Sbjct: 418 LSNAIKFTPPGGRIVVSLAR-AGERVRLSVADTGQGIAPEYLPHLFETFSRPERAFASPK 476 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPL-YDTSHP 816 G GLGL + + + + G S P +GT + + P +D P Sbjct: 477 RGLGLGLSIVRNIAQLHGGDVVATSAGPGRGTTVTVTLPAGWDVDDP 523 >gi|84386181|ref|ZP_00989210.1| hypothetical two-component sensor [Vibrio splendidus 12B01] gi|84378951|gb|EAP95805.1| hypothetical two-component sensor [Vibrio splendidus 12B01] Length = 809 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/255 (30%), Positives = 130/255 (50%), Gaps = 20/255 (7%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 + +Q+ +L AK +AE + +KS+FLA +SHEIRTP+ IIG S ++ + Sbjct: 217 QSVERIRQQYQELEKAKDVAEVANRNKSEFLANMSHEIRTPMNGIIGLSSLLSE-----M 271 Query: 619 GNPR-YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 P+ EY + ++ S +LD++ND+LD SKIE+G++ L EP+ + ++ S ++ Sbjct: 272 DMPKEQKEYVDMLNTSSLTLLDLINDILDYSKIEAGRLELQQEPMKMMGIAADVESTFRV 331 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A +K + + + IP ++ D ++Q+ N++ NAI FT G T EE Sbjct: 332 KAEQKGLRFQLAIDPKIPTMVIGDGTQLRQVLNNLVGNAIKFTEHGH----VTLSLRLEE 387 Query: 737 VI-----LRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 VI LRV+ D+G+G+ + + F Q S GTGLGL + +V Sbjct: 388 VIEPEQKLRVKFEVTDSGIGIAEDKQQSVFDKFQQADGSTTRIYGGTGLGLTICDKIVTL 447 Query: 788 NMGKFYIFSTPAKGT 802 K + S KG+ Sbjct: 448 MGSKLELTSVVGKGS 462 >gi|332705094|ref|ZP_08425176.1| putative transmembrane sensor domain protein [Lyngbya majuscula 3L] gi|332356044|gb|EGJ35502.1| putative transmembrane sensor domain protein [Lyngbya majuscula 3L] Length = 910 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 135/245 (55%), Gaps = 11/245 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ +L AK A+ + KS+FLA +SHE+RTPL I+G+++++K R + + Sbjct: 427 KERTQELETAKVAADVANQAKSEFLANMSHELRTPLNGILGYAQILK--RSSNISKSD-L 483 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I + G+ +L ++ND+LD+SKIE+ K+ LH + + + + ++ A +K I Sbjct: 484 DGIGIIHQCGSHLLTLINDILDLSKIEARKLELHKSDIHFTSFLMGVVEICRIRAQQKGI 543 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHTSNEEVI 738 +P I D + ++Q+ +N+L N I FT +G +I S+ + I Sbjct: 544 SFIYHAEPQLPVGIYGDEKRLRQVLINLLGNGIKFTDTGSVTFQVSLIGSSLNGDPSHTI 603 Query: 739 -LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 ++ DTGVGMT +L+K PF Q+ ++++ + EGTGLGL ++ ++ + + ST Sbjct: 604 RFQIEDTGVGMTPEQLKKIFLPFEQVGDTKK-QSEGTGLGLAISMKLISLMGSEIKVEST 662 Query: 798 PAKGT 802 +G+ Sbjct: 663 LGEGS 667 >gi|224823753|ref|ZP_03696862.1| multi-sensor hybrid histidine kinase [Lutiella nitroferrum 2002] gi|224604208|gb|EEG10382.1| multi-sensor hybrid histidine kinase [Lutiella nitroferrum 2002] Length = 1141 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 93/377 (24%), Positives = 181/377 (48%), Gaps = 23/377 (6%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL----EQNTPSVMNH 511 +++ + + + ++++G I +N A + FGY E++ K + L ++ P + Sbjct: 364 AVIRSAPNAMLAVDQQGFITMSNPAAVRYFGYSPEELQGKTIEMLLPERFRKHHPMLRQA 423 Query: 512 YLTEILSLDLRQTLEKITLGSTKEE--KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569 + + + + E L E + L ++ + + S+ DISE K + Sbjct: 424 FKADSKPRQMGEGRELFALCKDGREIPVEIGLSTMLTEEGVQTVCSII--DISERKLSEL 481 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L + + + +K++FLA +SHE+RTPL +I+ ++ + R G L + +E+A Sbjct: 482 RLREQAEQISRANRYKTEFLATMSHELRTPLNSILILADQLAENRQGNL-TAKQVEHATI 540 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+RSG +L ++ND+LD+SKIE+G+M L+ E V +++ ++ A +++ +T+ Sbjct: 541 INRSGKDLLALINDILDLSKIEAGRMTLNREKVLVNDLITTLRQNFLPVAENRQLTFQTT 600 Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---------QIIISTTHTSNEEVIL 739 ++ +L D + QI N+LSNA FT G + + + Sbjct: 601 KEDSAGDVLITDATRLFQILKNLLSNAFKFTDHGSVHLRVYQPQSVPPGMDSLPQHTLAM 660 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG GM + +L++ + F Q+ + + G+GLGL +++ + G + S Sbjct: 661 AVTDTGCGMPSDKLDRIFEAFEQLEQGSKRQFGGSGLGLSISRQLAHLLGGTIDVRSELG 720 Query: 800 KGTLIEIIFPLYDTSHP 816 G+ F LY HP Sbjct: 721 LGS----TFVLYLPVHP 733 >gi|154500004|ref|ZP_02038042.1| hypothetical protein BACCAP_03661 [Bacteroides capillosus ATCC 29799] gi|150271602|gb|EDM98859.1| hypothetical protein BACCAP_03661 [Bacteroides capillosus ATCC 29799] Length = 821 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/245 (32%), Positives = 129/245 (52%), Gaps = 10/245 (4%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A + A+K + KSDF + +SH++RTPL AIIGFS++ + G R +Y I Sbjct: 432 LQEALEAAKKSTKAKSDFFSSMSHDMRTPLNAIIGFSQLAQKNS-DDSGKVR--DYMQKI 488 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE--KRILIRT 688 + SG +L ++ND+L++SK+E+GK L+ + +L + V EA + + A KR Sbjct: 489 EFSGKQLLALINDILELSKMEAGKNALNNQRFNLKKYVEEAADIFREQAEHQGKRFTADL 548 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745 N I ++ D + QI N+LSN++ ++ G +I I + + + V DTG Sbjct: 549 DMHNEI--VVGDEFKIGQILNNLLSNSLKYSNPGAEIHLEIRQFDFRRHSKYQIVVEDTG 606 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +GM+ LE P+ + GTGLG+P+ K++V G+ + ST KG+ Sbjct: 607 IGMSRQFLEHLFDPYSRETCFTSAATVGTGLGMPIVKSLVQQMSGEISVESTLGKGSKFT 666 Query: 806 IIFPL 810 + PL Sbjct: 667 VTLPL 671 >gi|126347735|emb|CAJ89452.1| putative two-component hybrid sensor and regulator [Streptomyces ambofaciens ATCC 23877] Length = 1368 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/260 (29%), Positives = 131/260 (50%), Gaps = 5/260 (1%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+ + + + A+++AE + + K+ F + +SHE RTPLT I+G E ++ Q G + Sbjct: 313 IASARSYEAQQRRAEELAELDRA-KTAFFSNISHEFRTPLTLIMGPVEELRTQLAGADAH 371 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 R E + + R+G + +VN LLD S+IE+G+M +EP L ++ S+ + + Sbjct: 372 IR--EELDVVHRNGLRLGKLVNSLLDFSRIEAGRMQARYEPTDLSLVTADLASVFRSAID 429 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + + A + D +++ LN+LSNA+ FT G I T H + ++ Sbjct: 430 KAGLGFHIDCAPLPEPVYTDRGMWEKVILNLLSNALKFTFDGS--IRVTVHAEDTHAVVT 487 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+G+ E+ + + F +I N++ EG+G+GL L K +V + G ST Sbjct: 488 VADTGIGVPAAEMPRLFERFHRIENARSRSNEGSGIGLALVKELVGLHGGTITADSTEGG 547 Query: 801 GTLIEIIFPLYDTSHPHDCI 820 GT + P P D + Sbjct: 548 GTRFTVRLPFGSAHLPADAL 567 >gi|134300476|ref|YP_001113972.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] gi|134053176|gb|ABO51147.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] Length = 467 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 131/231 (56%), Gaps = 11/231 (4%) Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR--YIEYANYIDRSGNLV 637 K K+DF++ +SHE+RTPLT+I G+ E + FG R E N I + + + Sbjct: 239 KSDKMKNDFISSISHELRTPLTSIKGWGETL----FGEELQDREEVKEGLNIICKETDRM 294 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 + +V +LLD S+ +SG++ L+ E ++++ ++E I + +K+I + F +++P I Sbjct: 295 IGLVEELLDFSRFQSGRIKLNLEKININSLLTEVIQQYAIRVRQKKIEMPYQFNDSVPEI 354 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D +KQ+ +N+L NA+ FTP G++ IST + S + + ++G G+ + +L + Sbjct: 355 TGDRNRLKQVFINLLDNAVKFTPFCGKVQISTEY-SEGTIKIDFVNSGEGIRSEDLPRVT 413 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + F + N+ + G+GLGL + K +++ + G +I S P + T + +I Sbjct: 414 EKFYK-ANANR---PGSGLGLAIVKEIINLHQGDLHIESIPGQNTRVTVIL 460 >gi|326796891|ref|YP_004314711.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] gi|326547655|gb|ADZ92875.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] Length = 1061 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 90/266 (33%), Positives = 132/266 (49%), Gaps = 43/266 (16%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG-------FSEVIKNQRFGPL 618 Q + KL AK AE+ + KSDFLA +SHEIRTPL +IG + + K QR G L Sbjct: 536 QSREKLRLAKAEAEEANRAKSDFLANMSHEIRTPLNGVIGSLTLVLQSASIAKEQR-GLL 594 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 R +S +L+I+ND+LD+SKIE+G + L +PVSL E E L++ Sbjct: 595 DISR---------QSALTLLEIINDILDLSKIEAGNLILDRKPVSLTELTKETGELLRAK 645 Query: 679 ANEKRILIRTSFANNIP-------RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 A EK ++ NIP ++ D ++QI LN+L NA+ FT G + Sbjct: 646 ALEKGLVF------NIPSTPLPAIEVIGDPLRIRQILLNLLGNALKFTHEGEVNLAIRAR 699 Query: 732 TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK---AMVD 786 NE+ L V DTG+G++ + + + F Q +S GTGLGL + K A++D Sbjct: 700 FENEKYWLSMAVSDTGIGLSEEQKRQLFQRFKQADSSTTRLYGGTGLGLSICKEIAALMD 759 Query: 787 ANM--------GKFYIFSTPAKGTLI 804 + G + F P G ++ Sbjct: 760 GEIHVESELGSGSTFTFEAPFDGRVL 785 >gi|298247709|ref|ZP_06971514.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297550368|gb|EFH84234.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 747 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 85/355 (23%), Positives = 167/355 (47%), Gaps = 30/355 (8%) Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 GI + + G +L TN+A L GY ++ + P+ LR Sbjct: 392 GIFVADETGRLLETNQAFLDLVGYTQDEWQAEALYAMTPPFFPASF-----------LRP 440 Query: 524 TLEKITLG--STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 ++ G S+ ++ + L K LP + H + + I+E++ Sbjct: 441 LIQSARAGDGSSDPQETILLHKSGKALPIFMALTCIEHT-------QTCIGFVLDISERK 493 Query: 582 S--SHKSDFLARVSHEIRTPLTAIIGFSEVIK----NQRFGPLGNPRYIEYANYIDRSGN 635 + K F+ SHE++TP+T++ GF +++ Q GN + ++Y +D Sbjct: 494 ALEQRKDIFIGMASHELKTPVTSLKGFLSLVQRLLSQQGMSQQGNEKILQYLARMDAQIE 553 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 + ++NDLLD+S +++G+M E V +D V E + VQ R+L++ Sbjct: 554 KLTKLINDLLDVSMMQTGQMIYREEQVDVDTLVREIVEDVQETTQTHRLLVQ---GEARA 610 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 + D + Q+ +N+L NAI ++P+ ++I T+ E+V++RV+D G+G++ +K Sbjct: 611 TVFGDPDRLGQVLINLLQNAIKYSPNANTVLIHLG-TTEEQVLIRVQDFGLGISKEHHQK 669 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F ++ + ++ G G+GL +++ +V + G F++ S KG + + PL Sbjct: 670 IFERFYRVTDQEEKTYPGMGIGLSISQEIVKRHGGHFWVESERNKGAIFSLSLPL 724 >gi|257882230|ref|ZP_05661883.1| histidine kinase [Enterococcus faecium 1,231,502] gi|261208377|ref|ZP_05923027.1| hypothetical protein EFZG_02419 [Enterococcus faecium TC 6] gi|289566830|ref|ZP_06447240.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus faecium D344SRF] gi|293567712|ref|ZP_06679055.1| sensor protein YycG [Enterococcus faecium E1071] gi|294616678|ref|ZP_06696448.1| sensor protein YycG [Enterococcus faecium E1636] gi|294619189|ref|ZP_06698675.1| sensor protein YycG [Enterococcus faecium E1679] gi|294623109|ref|ZP_06701995.1| sensor protein YycG [Enterococcus faecium U0317] gi|257817888|gb|EEV45216.1| histidine kinase [Enterococcus faecium 1,231,502] gi|260077438|gb|EEW65157.1| hypothetical protein EFZG_02419 [Enterococcus faecium TC 6] gi|289161361|gb|EFD09251.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus faecium D344SRF] gi|291589647|gb|EFF21452.1| sensor protein YycG [Enterococcus faecium E1071] gi|291590432|gb|EFF22171.1| sensor protein YycG [Enterococcus faecium E1636] gi|291594571|gb|EFF25962.1| sensor protein YycG [Enterococcus faecium E1679] gi|291597478|gb|EFF28643.1| sensor protein YycG [Enterococcus faecium U0317] Length = 611 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 93/367 (25%), Positives = 173/367 (47%), Gaps = 39/367 (10%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 ME E +L S+L +DG+ +R G +++ N L E+ + + L+ Sbjct: 256 MEAERNRLDSVLSHMTDGVIATDRRGKVITINDMAVSLLDIKNEEAIGQSILTLLDIEEE 315 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYSLTMHDIS 562 + L ++L L++ T ST E + LR+ I ++ F S +HD++ Sbjct: 316 ----YTLRKLLEDPNEMVLDRST--STLESDQMILRVDFSMIRRESGFISGLVAVLHDVT 369 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQRFGP 617 E EK + +F++ VSHE+RTPLT++ + E + K++ P Sbjct: 370 E--------------QEKTERERREFVSNVSHELRTPLTSMRSYIEALSEGAWKDEEVAP 415 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 +++ +D + ++ ++NDLL++S++++G L E V+ +E V+ + + Sbjct: 416 ----NFLKVT--LDETDRMIR-MINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRFDM 468 Query: 678 YA--NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 EK IR F + D + Q+ NI++NAI ++P GG I T N Sbjct: 469 MVGNQEKNYKIRREFTQRDLWVEVDTDKIIQVVDNIMNNAIKYSPDGGTITCRLLETHNN 528 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 VIL + D G+G+ +L + + F ++ ++ GTGLGL +++ ++ A+ G + Sbjct: 529 -VILSITDQGLGIPKKDLNRVFERFYRVDKARARAQGGTGLGLAISREVIKAHRGAIWAE 587 Query: 796 STPAKGT 802 S KG+ Sbjct: 588 SKEGKGS 594 >gi|218690382|ref|YP_002398594.1| sensory histidine kinase AtoS [Escherichia coli ED1a] gi|218427946|emb|CAR08866.2| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia coli ED1a] Length = 608 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 187/398 (46%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 229 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 288 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 289 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 341 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 342 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 396 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ +++ Q P+ + EY + + + + + ++ LL+ S+ Sbjct: 397 AHEVRNPLTAIRGYVQILHQQTRDPI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 452 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 453 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL 508 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 509 INAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLSLQKKIFDPFF------TTKAP 562 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 563 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 600 >gi|254412501|ref|ZP_05026275.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180811|gb|EDX75801.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 650 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 126/236 (53%), Gaps = 25/236 (10%) Query: 588 FLARVSHEIRTPLTAIIGFSEVI-KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 FLA +SHE+RTPL AI+GF++V+ ++ + P EY I+RSG +LD++ND+LD Sbjct: 161 FLANMSHELRTPLNAILGFTQVMSRDLKI----TPEQREYLGIINRSGEHLLDLINDVLD 216 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705 +SKIE+G ++L+ L + + Q+ A +K++ + S A N+P+ I D + ++ Sbjct: 217 LSKIEAGIISLYETSFDLYRLLDNLEEMFQIKAEQKKLNLVFSVAPNVPQTIKTDAKKLR 276 Query: 706 QIALNILSNAIHFTPSGG---QIIISTTHTSNE---------------EVILRVRDTGVG 747 +N+L NAI FT G ++ ++T +++ + V DTG G Sbjct: 277 VCLINLLGNAIKFTEQGTITLRVNLATEPLTDQNPSDTDSSSLSAFPPRLRFEVEDTGAG 336 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 ++ E++ F Q Q++ EGTGLGL + + V G + S KGT+ Sbjct: 337 ISPAEIDNLFDAFVQTETGQKM-AEGTGLGLTITRKFVQLMGGTITVSSVVGKGTI 391 >gi|28899252|ref|NP_798857.1| sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|153838393|ref|ZP_01991060.1| sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus AQ3810] gi|28807476|dbj|BAC60741.1| sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|149748200|gb|EDM59059.1| sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus AQ3810] gi|328474211|gb|EGF45016.1| sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus 10329] Length = 1128 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 90/317 (28%), Positives = 150/317 (47%), Gaps = 18/317 (5%) Query: 508 VMNHYLTEILS---LDLRQTLEKITLGSTKEEKLLSLR---IIIKKLPFSSCYSLTMHDI 561 + +HYL+ ++ L L EK++ G E + R I + F I Sbjct: 370 IASHYLSNFITSPLLKLTWAAEKVSAGDLDETTFNTERKDEIGRLAISFERMQRSIREKI 429 Query: 562 SEWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 KQ+ +L K+ +K++ K +FLA SHE+RTPL ++G +E + + Sbjct: 430 QTIKQQNEELESNIKLIQKQNDELQLADKLKDEFLATTSHELRTPLHGMVGIAETLVSGA 489 Query: 615 FGPLGNPRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + P +Y + I +SG + ++V+DLLD K+ G M++ VSL A + Sbjct: 490 NGVI--PASQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLE 547 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 L K I I ++ + AD + ++Q+ N++ NAI +T S G+I+IS T Sbjct: 548 LSNHLLGNKTIRIINQVPADLKAVSADPQRLEQVLYNLIGNAIKYT-SEGKIVISAT-IV 605 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ V ++V DTG G+ LE +P Q +G GLGL +++ +++ G Y Sbjct: 606 DDHVRVQVVDTGQGIPAEHLEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLY 665 Query: 794 IFSTPAKGTLIEIIFPL 810 + S P GT PL Sbjct: 666 VSSQPMVGTTFSFTLPL 682 >gi|110680753|ref|YP_683760.1| two-component hybrid sensor and regulator, putative [Roseobacter denitrificans OCh 114] gi|109456869|gb|ABG33074.1| two-component hybrid sensor and regulator, putative [Roseobacter denitrificans OCh 114] Length = 1115 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 140/250 (56%), Gaps = 9/250 (3%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + ++ ++ KL AK+ AE ++ K+ ++ +SHE+RTPL +I GF+++++ P Sbjct: 637 LFEVRAHERTDRKLQQAKEKAEAANTAKTRYMTGLSHELRTPLNSIYGFAQILERDEDIP 696 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + I I RS + ++ LLDIS+IE+G++ + + ++L + + S+ + Sbjct: 697 IRRRNSI---TTIRRSSEHLAGLIEGLLDISRIEAGRLKISRDRINLRVFLQQVSSIFKE 753 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A EK + + +P I+ D + ++QI +N+LSNAI +T + GQ+ + T+ NE Sbjct: 754 AAREKNLTFTVDVSKFLPVWIVFDEKRLRQIFINLLSNAIRYTDA-GQVSLRITY-RNEV 811 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 ++ VRDTG G+ + ++ PF + N+ +G+GLGL + K +V+ G+ + S Sbjct: 812 AVIEVRDTGCGIMAADHKRIWDPFERGNNTV---AQGSGLGLTITKLLVEILGGEIEMES 868 Query: 797 TPAKGTLIEI 806 TP G++ + Sbjct: 869 TPGLGSVFRV 878 >gi|291519879|emb|CBK75100.1| Signal transduction histidine kinase [Butyrivibrio fibrisolvens 16/4] Length = 881 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/269 (30%), Positives = 137/269 (50%), Gaps = 16/269 (5%) Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 CY L D++E +N+L A+ ++ KS+FL+ +SHEIRTP+ I G +E+I Sbjct: 336 CYILVATDLTE----ENRLIQE---AQSANAAKSNFLSNISHEIRTPINVISGMNELILR 388 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + + I+YA ID + + ++ND+LD SKIESGK+ L ++ +++ Sbjct: 389 E----CKDESIIKYAENIDVASRNLSSLINDVLDFSKIESGKIELISTDFNIGSLLNDGY 444 Query: 673 SLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTT- 730 +L A +K N P +L+ D +KQI N++SNA+ +TP G I ++ T Sbjct: 445 NLFLALAQQKMQSFALECDPNTPSVLSGDEVRLKQILTNLISNAVKYTPDRGAINVTVTS 504 Query: 731 -HTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 NE + I+ V D G+G+ ++ + F + ++ +G+GLGL + K +VD Sbjct: 505 KELENETIMLIINVTDNGIGIRTEDIPNLFQNFQRFELTKNRSIQGSGLGLAITKNLVDL 564 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 G + ST KG+ + P H Sbjct: 565 MHGTINVDSTYGKGSSFTVNLPFKVMDHA 593 >gi|160884048|ref|ZP_02065051.1| hypothetical protein BACOVA_02022 [Bacteroides ovatus ATCC 8483] gi|156110390|gb|EDO12135.1| hypothetical protein BACOVA_02022 [Bacteroides ovatus ATCC 8483] Length = 400 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/282 (29%), Positives = 140/282 (49%), Gaps = 41/282 (14%) Query: 548 LPFSSCYSLTM-HDISE-WK------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 P Y L M DIS+ W+ Q++ +L A+ E+ KS FLA +SHEIRTP Sbjct: 138 FPLDKEYLLCMCRDISQQWEAEQTNAQQQKELKAARIKVEESDRLKSAFLANMSHEIRTP 197 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 L AI+GFS++I N +Y+ I+R+ ++L++ ND+LD++ +E+ + + Sbjct: 198 LNAIVGFSKLITYATSAEEKN----QYSEIIERNSEMLLNLFNDILDLASLEADSLKFNI 253 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS----------VKQIAL 709 P+ L + + L Q + ++ + N + IL D+ + + QI Sbjct: 254 RPIKL---IDICLQLEQQFCHKTQ--------NGVKLILDDVNTDMYTSGDWNRIIQIIS 302 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 N+LSNA FTP G I + E+ + V+D+G+G+ + + FG++ + Q Sbjct: 303 NLLSNATKFTPKGE---IHFGYREKEDFVEFYVKDSGIGIPAARIATIFRRFGKVNDFVQ 359 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L + +V+ G+ ++ S +G+ PL Sbjct: 360 ----GTGLGLTLCRMLVEKMGGRIWLRSQEGQGSRFYFTLPL 397 >gi|83310416|ref|YP_420680.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82945257|dbj|BAE50121.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 1018 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 124/245 (50%), Gaps = 9/245 (3%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L+ AK+ AE + KS FLA +SHEIRTP+ +IG E++ + L N + + + Sbjct: 492 LTIAKENAEAANVAKSAFLAAMSHEIRTPMNGVIGMLELLDHTE---LDNDQR-DLVSTT 547 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG +L I++D+LD SKIE+G++ L PV LD V + V A K + + Sbjct: 548 RESGLSLLRILDDVLDFSKIEAGRLELEQVPVRLDRIVESVVQTVAPAAAAKSLTLSAFV 607 Query: 691 ANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII----ISTTHTSNEEVILRVRDTG 745 +P +L AD ++QI N+ NA+ FT G I T + + +RV DTG Sbjct: 608 DPGLPPVLLADPVRLRQILFNLAGNAVKFTAQGLVAIHMGNGGTDGQGRQILSIRVADTG 667 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ + ++ +PF Q +S R GTGLGL + + +VD G S P G+ Sbjct: 668 IGIDSSLRDRLFQPFTQAESSTTRRFGGTGLGLSITRRLVDLMDGTAGFESEPGVGSSFW 727 Query: 806 IIFPL 810 PL Sbjct: 728 CRLPL 732 >gi|39996730|ref|NP_952681.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] gi|39983611|gb|AAR35004.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] Length = 710 Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 97/397 (24%), Positives = 185/397 (46%), Gaps = 48/397 (12%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL----EQNTPSVMNH 511 S+LE SD I +++ I+ N+ + FG+ E+++ P + L N P V N Sbjct: 304 SLLEDASDAIVVVDENEIVKMVNKMAEEFFGHSSEEVVGLPLSRMLVLVKTHNIPIVYN- 362 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 + E+ R E+I + E+++ L I L I + +E+ L Sbjct: 363 FFQEVGKG--RHVAEEIRFSRVEGEQVVGL--IHANTVTIGSERLIQAIIRDVTREREIL 418 Query: 572 SHAKKIA---EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 + +K A + + K FL SHE++TPLT I+G++E+I + G + + I+ Sbjct: 419 FNLEKSATDLARLNKMKDSFLGIASHELKTPLTVIMGYAELILSDMSGKV-DRNVIDMVQ 477 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I + + +IV D++DIS I+ ++ L + V ++ V ++++ ++ + + ++ + Sbjct: 478 NISNAAARLDNIVKDMVDISMIDERRLRLKLDDVDVNRLVEDSMNELRFFVSMRKQKLVG 537 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST------------------- 729 +PRI D + Q+ N++ NAI FTP GG+I +ST Sbjct: 538 ELDETVPRIKGDPVRLMQLMSNVIGNAIKFTPDGGRITVSTRTKYLLRSKQAPIPELVKP 597 Query: 730 -THTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ-------IRGEGTGLGL 778 + E+ V + + DTG+G+ + + F ++ N ++ + G GLGL Sbjct: 598 VVNIGKEQHLYVEITITDTGIGIDMDDQLRIFDKFYEVGNIEEHSSGKVAFKARGAGLGL 657 Query: 779 PLAKAMVDANMGKFYIFS---TPAK--GTLIEIIFPL 810 +AK +V+ + G+ ++ S P + G+ I+ PL Sbjct: 658 SIAKGIVEMHGGEIWVESPGYNPEQFPGSTFHIVLPL 694 >gi|301163195|emb|CBW22745.1| putative two-component regulatory system histidine kinase [Bacteroides fragilis 638R] Length = 511 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 84/256 (32%), Positives = 128/256 (50%), Gaps = 14/256 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H I E K ++KL A+ A++ KS FLA +SHEIRTPL AI+GFS +I L Sbjct: 261 HSIQEHKNTEDKLRAARNKAQESDRLKSAFLANMSHEIRTPLNAIVGFSNLIAGG-IVDL 319 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 +Y+ I ++ N +L +V+D+LD+S IES M F L ++E + Q Y Sbjct: 320 DTEEARDYSALISKNCNYLLTLVSDVLDLSCIESDTMTFKFTVYPLTRLLTE---IYQKY 376 Query: 679 ANEKRILIRTSFANNIP----RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 N RI F +P I D ++Q+ ++L NA FT G I Sbjct: 377 EN--RIPQEVQFNLLLPTDNVEIETDAVRLRQVIEHLLDNAAKFTVKGHIDIGYALSDHG 434 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E++ + V DTG G+ + + +K + F +I + Q G GLGL + K +V+ G + Sbjct: 435 EKIYVFVADTGCGIPSDQYKKVFERFYKIDSFVQ----GAGLGLSVCKTIVEGLGGTINV 490 Query: 795 FSTPAKGTLIEIIFPL 810 +S +G+ +I PL Sbjct: 491 YSQLKEGSRFSVILPL 506 >gi|117923522|ref|YP_864139.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607278|gb|ABK42733.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 771 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/265 (31%), Positives = 131/265 (49%), Gaps = 11/265 (4%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 + ++L ++ +E +Q LS A + A++ K FLA +SHEIRTPL IIG S Sbjct: 359 MARAFALFVYKRAEAEQ---ALSQAVEQAQRADRAKGIFLATMSHEIRTPLHGIIGTSRQ 415 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + PL + + A I+++ +L I+ND+LD SKI++ ++ L L + Sbjct: 416 LNRM---PL-DRQVAHKAQVIEQASQALLGILNDVLDFSKIDTEQLVLEEVVFDLPRMLQ 471 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QI 725 E ++V A EK + + +PR D ++QI N+LSNAI FT G Q+ Sbjct: 472 ELYAVVHSQAEEKGLQLHLQLQEPLPRACRGDQTRLRQILNNLLSNAIKFTQQGEVTLQV 531 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 ++ V V DTG+G+ LE+ +PF Q+ S R GTGLGL ++ + Sbjct: 532 ALTGETDPAPWVAFAVADTGIGIDEAHLERLFEPFKQMDESINRRFGGTGLGLAISAKLA 591 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810 +A G G+L ++ PL Sbjct: 592 EAMGGSIRAKRRTEGGSLFTLMIPL 616 >gi|302916471|ref|XP_003052046.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256732985|gb|EEU46333.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 2624 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/240 (33%), Positives = 130/240 (54%), Gaps = 22/240 (9%) Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 K+AE+ + KS FLA VSHE+RTPL +IG SE++++ + +E A+ I S + Sbjct: 1932 KLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDSDL----DKDQLEMADSIRVSAD 1987 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN--- 692 L+L ++ND+LD SK+E+ KM L+ + ++ V E + V Y+N + +TS N Sbjct: 1988 LLLTVINDILDFSKMEADKMKLYIIAFNPEDMVREVVRAVS-YSNRE----KTSKKNVKI 2042 Query: 693 ----NIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRD 743 N+P +L D + Q+ N++ N++ FT G I + +E + VRD Sbjct: 2043 VQDINLPPMLIYGDPIRLHQVLGNLIGNSLKFTEDGSITIGARLDKETKEHAMLTFWVRD 2102 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM-GKFYIFSTPAKGT 802 TG+G+ +L K +PF Q S + G+GLGL + K++++ M GK + S GT Sbjct: 2103 TGIGIPPQQLAKLFQPFSQADASTARKYGGSGLGLSICKSLIETMMKGKIRLESEENVGT 2162 >gi|90413136|ref|ZP_01221132.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium profundum 3TCK] gi|90325827|gb|EAS42279.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium profundum 3TCK] Length = 1117 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 81/280 (28%), Positives = 144/280 (51%), Gaps = 5/280 (1%) Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHAKKIAEKES 582 LE+ G+ + +++ L I ++ S +T+ +E +Q +S + + Sbjct: 384 LEQEIKGTERSDEIGRLAISFARMQRSIREKITLIRDQNNELEQNLKVISQQNENLQAAD 443 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 K +FLA SHE+RTPL ++G +E + GP+ + + I+ SG + ++V+ Sbjct: 444 KLKDEFLATTSHELRTPLHGMVGIAESLLAGANGPVQKSQRRQLEMIIN-SGQRLTNLVD 502 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702 DLLD K+ G ++++ V+L AV + L K + I N++P +LAD + Sbjct: 503 DLLDYHKMRYGDLDINKHAVNLPSAVRLVLELSSHLLGSKPVRIINQIPNDLPLVLADEQ 562 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 ++QI N++ NAI +T S G+II+S+T ++ ++V DTG G+ +LE +P Q Sbjct: 563 RLEQILYNLVGNAIKYT-SEGKIILSST-VLESQIRIQVVDTGQGIPAEQLEHIFEPLIQ 620 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G GLGL +++ ++D G Y+ S P GT Sbjct: 621 ANTGLANYRQGAGLGLSISRQLIDLMGGHLYVSSQPMVGT 660 >gi|310780117|ref|YP_003968449.1| histidine kinase [Ilyobacter polytropus DSM 2926] gi|309749440|gb|ADO84101.1| histidine kinase [Ilyobacter polytropus DSM 2926] Length = 630 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 122/241 (50%), Gaps = 10/241 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK+ AE + K++FLA++SHE+RTPLT IIG+S ++K E Sbjct: 150 QLKSAKEHAEAANRSKNEFLAKISHEMRTPLTPIIGYSRMLKKSELSDYTK----EKLET 205 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG +L+ N+LLD SKIE+G + L+FEP + + E + A EK I + Sbjct: 206 IHNSGVKLLNFTNELLDFSKIEAGTVELNFEPFGIKKFFKEIYNEHCEKAEEKNIQFQIE 265 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 N I +D + ++ N++ NAI +T G ++ T + + V D+G+G++ Sbjct: 266 LPQNDIIIYSDKMKLYEVVKNLVHNAIKYTKKGS--VLCTVEIRDSLLCFDVYDSGIGIS 323 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + + FGQI N Q G GLGL + K +++ G + S GT + P Sbjct: 324 DKNINYIFESFGQI-NKQ---SAGAGLGLSITKRLIEILKGDIKVESKLGIGTTFNVSIP 379 Query: 810 L 810 + Sbjct: 380 I 380 >gi|220904867|ref|YP_002480179.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869166|gb|ACL49501.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 685 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 101/361 (27%), Positives = 174/361 (48%), Gaps = 15/361 (4%) Query: 453 QLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 QL IL+A + + I++ E IL +N++V++ F P E K + +++P Sbjct: 185 QLRDILDAFPNPVCIVDMETNRILFSNKSVAETFPTPQESEDDKCHKRLMGRDSPCP--- 241 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 Y T + +R+T E E + ++ K + + + + + IS + + Sbjct: 242 YCTNPI---IRRTGEAYQWTYQNEVTNRTYTVVDKVIKWDNDRPVRL-SISTDITDILRT 297 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 H K+ A S K++FLA +SHEIRTPL IIG + + GP G + EY I Sbjct: 298 RHEKQSAVIASQAKTEFLAHMSHEIRTPLNGIIGLTHLALQS--GPDGELK--EYLLKIR 353 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 S +L I+ND+LD+SKIE+ KM L ++E + + V+ +K + + Sbjct: 354 SSSTNLLAIINDVLDLSKIEANKMELENVNFMVEEVLDFVHTSVRFAMEQKGLEYQCHLD 413 Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSG--GQIIISTTHTSNEEVILRVRDTGVGM 748 +++P ++ D +KQ+ LN++SNA+ FT G G I + + V DTG+G+ Sbjct: 414 DDVPLKLWGDSLRLKQVLLNLMSNAVKFTARGKVGLRIHRQQDDDGDWLHFEVSDTGMGI 473 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 ++ + P+ Q +S R GTGLGL + K + + G + S +G+ + Sbjct: 474 SHEYQQHLFDPYTQANSSISRRFGGTGLGLSICKRIAELMQGSLWCESRLGEGSRFHLRI 533 Query: 809 P 809 P Sbjct: 534 P 534 >gi|153869957|ref|ZP_01999457.1| Serine/Threonine protein kinase and Signal Transduction Histidine Kinase (STHK) with GAF sensor [Beggiatoa sp. PS] gi|152073580|gb|EDN70546.1| Serine/Threonine protein kinase and Signal Transduction Histidine Kinase (STHK) with GAF sensor [Beggiatoa sp. PS] Length = 784 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 81/273 (29%), Positives = 134/273 (49%), Gaps = 26/273 (9%) Query: 562 SEWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 ++ +Q A++IAE+ + KS FLA +SHE+RTPL AI+G+SE+I+ + Sbjct: 506 AQLEQAHFAAEQARRIAEQTRQNVEAANRAKSTFLANMSHELRTPLNAILGYSEMIQEEA 565 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 G + + I +G +L I++D+LDISKIE+ K+ L ++ V E ++ Sbjct: 566 -QESGYNDILPDLDKIQIAGIQLLGIISDILDISKIEAEKLELDLSEFAVTYLVEEMVTT 624 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS- 733 +QL + + N + + AD V QI LN+L+NA FT + G I ++ T Sbjct: 625 IQLMIEMGGNTLNIEWGNELGMLYADYHKVGQILLNLLNNAGKFT-NHGTITLTITRKKL 683 Query: 734 ----------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 +E + ++ DTGVG+ ++ +PF Q NS GTGLG Sbjct: 684 SLGKGNNKSNSKNKAFSEWIFFQIADTGVGIPPEQMNHIFEPFTQGDNSSTREYGGTGLG 743 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 L +++ A G + S KG++ + P+ Sbjct: 744 LTISEYFCRAMGGNLLVSSEVGKGSVFTVQLPI 776 >gi|127514716|ref|YP_001095913.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4] gi|126640011|gb|ABO25654.1| Hpt sensor hybrid histidine kinase [Shewanella loihica PV-4] Length = 1042 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 125/237 (52%), Gaps = 8/237 (3%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 LS A++ AE + K DFLA +SHEIRTP+ +IG ++ + P+ RY++ A+ Sbjct: 394 LSEAREKAEVAAKTKEDFLACMSHEIRTPMNGVIGILGLLGETQLSPM-QKRYVDVAS-- 450 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 S + +L ++ND+LD SKIESGK + L E + + V L E+ + + Sbjct: 451 -ASADSLLSLLNDILDFSKIESGKFEIEAIEFDLVELLDLFVQSVSLKLEERHLPLFVDI 509 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGV 746 R ++ D ++QI +N++ NAI FT G + +S + + EV+L V DTG+ Sbjct: 510 TQLQYRYVVGDPSRLRQILVNLVGNAIKFTEEGWIALRLSNRLSESGEVLLSCEVEDTGI 569 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 G+ +L PF Q+ +S GTGLGL +AK + + G+ + S G++ Sbjct: 570 GIAKEKLAMLFNPFIQVDSSTTRMFGGTGLGLSIAKRLCELMQGEIKVRSQQEVGSI 626 >gi|218887461|ref|YP_002436782.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758415|gb|ACL09314.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1499 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/298 (27%), Positives = 147/298 (49%), Gaps = 13/298 (4%) Query: 526 EKITLGSTKEEKLLS-LRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKES 582 + I L + K +++ ++ ++++ P DIS + + L AK+ AE + Sbjct: 996 DNIPLRTAKGRRMMGQMKAVVQRGPDGRPVRARGAFQDISRLYEAEQALQRAKEEAESAN 1055 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVI---KNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 KS F+A +SHE+RTPL+ I+G +V N P + Y + I +L Sbjct: 1056 ELKSQFVANISHEMRTPLSGILGIVDVALSRLNDTALPAHDNEQGHYLSMIRNVSEGLLH 1115 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RIL 698 ++NDLLD S++E+G++ L L AVS+A++ + + A K + + ++P R+ Sbjct: 1116 VINDLLDFSRMEAGRLGLDQVEYDLRAAVSDALAPLAVQAERKGLSLTVHIDADVPARLQ 1175 Query: 699 ADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSN---EEVILR--VRDTGVGMTNYE 752 D ++QI +N+ NA+ FT + G + + ++ LR V+DTG G+T + Sbjct: 1176 GDPLRLRQILVNLAGNAVKFTDTDTGSVHVDVRRSAQCPRPGGCLRFTVQDTGPGITADK 1235 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 L + F Q S R G+GLGL +++ +V G + STP +G+ P+ Sbjct: 1236 LPLLFESFSQADGSHTRRHSGSGLGLAISRHIVRLQGGDIGVNSTPGQGSRFWFTLPI 1293 >gi|170748577|ref|YP_001754837.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170655099|gb|ACB24154.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 796 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 86/273 (31%), Positives = 140/273 (51%), Gaps = 17/273 (6%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T D++E K+ + + A++ AE + KS F+A +SHE+RTPL+A+IG+SE++ + Sbjct: 247 TCVDVTERKEAEEAVERARQAAEAANRAKSQFIANMSHELRTPLSAVIGYSEML-GEELE 305 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA---VSEAI- 672 +G + I+ + +L ++ND+LDISKIE+G+M E ++ + VS++ Sbjct: 306 DIGQAALLPDLRKIEAAARHLLSLINDVLDISKIEAGRMTASAETFTVSDLLRDVSDSTG 365 Query: 673 SLVQLYANEKRILIRTSFAN--NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 SLV+ N R ++ T A ++ + D ++Q LN++ NA FT G I T Sbjct: 366 SLVEKKGN--RFVLDTGAAGTADLGSMHQDQTKIRQCLLNLIGNAAKFTERG--TITLTV 421 Query: 731 HTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 EE + V DTG+G+T ++ + + F Q +S + GTGLGL + +A Sbjct: 422 RRHREEGADWLSFAVADTGIGLTEEQIGRLFERFVQADDSTTRQFGGTGLGLAITRAFCR 481 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 G + STP G I P T P D Sbjct: 482 TMGGDIGVASTPGAGATFTIRLPA--TLRPEDA 512 >gi|166367112|ref|YP_001659385.1| two-component hybrid sensor and regulator [Microcystis aeruginosa NIES-843] gi|166089485|dbj|BAG04193.1| two-component hybrid sensor and regulator [Microcystis aeruginosa NIES-843] Length = 731 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 121/235 (51%), Gaps = 9/235 (3%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN----QRFGPLGNPRYIEYANYIDRS 633 AE + KS+FL +SHE+ TPLT IIG S ++ F P ++ Y I + Sbjct: 360 AEAANLCKSEFLNNISHELLTPLTCIIGLSSTLQKCSAANNFLPPDKQKH--YLKVIQDN 417 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI--LIRTSFA 691 GN +L+++NDLL+ S++ +GK L + SL + + +++ A K I ++ Sbjct: 418 GNKLLELINDLLNFSQVSAGKAVLDIKQFSLKYLCNHVLEIIKTEAETKEINLILEMKIT 477 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 AD V+QI L +L NA+ FTP G + + ++ VI +V DTG+G+ Sbjct: 478 EKEHYFYADYDRVQQILLYLLKNALKFTPEQGAVTLRLWKEGSQ-VIFQVEDTGIGIPAQ 536 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 ++ + F Q+ S++ R G GLGL L K +V+ + G + S KG++ + Sbjct: 537 KIPLLFEKFTQLDGSRKRRYGGVGLGLALTKQLVELHRGTIEVESCLDKGSIFTV 591 >gi|163800895|ref|ZP_02194795.1| sensor histidine kinase/response regulator [Vibrio sp. AND4] gi|159175244|gb|EDP60041.1| sensor histidine kinase/response regulator [Vibrio sp. AND4] Length = 576 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 133/244 (54%), Gaps = 9/244 (3%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++L+ A++ AE+ + KS+FLA +SHEIRTPL +++G ++++ R + E N Sbjct: 199 SQLAKAREEAERANQSKSEFLAMMSHEIRTPLNSVLGMLDILRQSRL----TEQQFEVLN 254 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI-- 686 ++ S L+L I++D+LD+SKIESG +L+ + +L +AV+ I + A K + Sbjct: 255 QMECSAELLLAIISDILDLSKIESGSFHLNEKWTNLSDAVTLVIYQQKQLATNKNLSFEY 314 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 + + +N + D V Q+ N++ NA FT GG I T S+ ++++ V DTG+ Sbjct: 315 QCNLDSN-KQYWIDSTRVSQVLFNLIGNASKFTDFGG--INVTVIESDGQLVISVIDTGI 371 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ ++ F Q +S R GTGLGL + K +V+ G + S G+ EI Sbjct: 372 GIPKAKIGNLFTAFHQGDSSITRRFGGTGLGLAITKHLVEMMRGTISVKSEENVGSHFEI 431 Query: 807 IFPL 810 P+ Sbjct: 432 KIPV 435 >gi|153874606|ref|ZP_02002762.1| periplasmic sensor hybrid histidine kinase [Beggiatoa sp. PS] gi|152068930|gb|EDN67238.1| periplasmic sensor hybrid histidine kinase [Beggiatoa sp. PS] Length = 468 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 130/229 (56%), Gaps = 23/229 (10%) Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHE+RTPL I+G+++++ + R L + + E N I +SG +L ++ND+LD+SKIE Sbjct: 1 MSHELRTPLNGILGYAQILSHDR--SLADKQK-EGLNIIKQSGEHLLTLINDILDLSKIE 57 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR------ILADLRSVK 705 +GK+ L L + + L +L A+EK I + N P+ + D + ++ Sbjct: 58 AGKLELVENDFYLPTFLQGIVELFRLRADEKDIAF--IYEENSPQGRLPTGVHGDEKRLR 115 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE--------EVILRVRDTGVGMTNYELEKAM 757 QI LN+LSNA+ FT G + + ++ S+ + +++D+GVG+ ++ Sbjct: 116 QILLNLLSNAMKFTFKGS-VTFTVSYQSDSFLDGLQKGRLDFKIQDSGVGIATDDIANIF 174 Query: 758 KPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +PF Q+ SQQI EGTGLGLP++K +V+ G+ + S KG++ + Sbjct: 175 EPFQQVGEQSQQI--EGTGLGLPISKKLVEMMGGQLNVTSQLGKGSIFQ 221 >gi|219847429|ref|YP_002461862.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219541688|gb|ACL23426.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 726 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/248 (29%), Positives = 120/248 (48%), Gaps = 26/248 (10%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 + D+ + H++R PLTAI+ +++ GP+ +P+ E N + +L+++N L Sbjct: 478 REDYTGMLIHDLRAPLTAIMNGIMMVQRGLGGPI-SPQQQEMLNIAYQGSQAMLEMINTL 536 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LDISK+E G+M L+ EP+S V EAI +Q+YA ++++ + A +P AD + Sbjct: 537 LDISKMEQGRMILNIEPLSPYAVVDEAIERLQVYAQQRKVQLAQDLAVGLPLFEADREKI 596 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHT----------------------SNEEVILRVR 742 ++ N++ NAI F+P G I I + +I V Sbjct: 597 VRVLQNLIDNAIKFSPENGIITIGARQIELDTDTLGGSHPDLPMPLPSLPAGRWLIYWVA 656 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D G G+ + + FGQ+ QQ +G GTGLGL K V+A+ G ++ S G+ Sbjct: 657 DQGPGIPPQYHARIFEKFGQV---QQQKGRGTGLGLTFCKLAVEAHRGHIWLRSREGAGS 713 Query: 803 LIEIIFPL 810 P+ Sbjct: 714 TFAFALPV 721 >gi|323699563|ref|ZP_08111475.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323459495|gb|EGB15360.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 813 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 77/253 (30%), Positives = 129/253 (50%), Gaps = 21/253 (8%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP- 621 E + +L A + A+ + KS FLA +SHEIRTPL AI+G SE+ L P Sbjct: 276 ELTSKSQRLVTAMEKADAATRAKSSFLANMSHEIRTPLNAILGMSELA-------LSIPD 328 Query: 622 --RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R Y + + +GN +L ++ND+LD SKIE+ ++ L L + + L + A Sbjct: 329 KDRKDRYLHRVMEAGNSLLSVINDILDFSKIEAARLTLENIDFDLRRTIEGTLDLHLIAA 388 Query: 680 NEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 EK + +R A ++ P ++ D ++QI +N++ NAI FT +GG + +S + + Sbjct: 389 EEKGLELRAGVAEDVPPALVGDPSRLRQILINLIGNAIKFTETGG-VTVSVRPAAPADDL 447 Query: 737 -------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 ++ V DTGVG+ ++ + F Q +S + GTGLGL + + +V+ Sbjct: 448 KPGDPITLVFAVTDTGVGIPEHKQRDIFQSFLQADDSITRKYGGTGLGLAICQLLVELMG 507 Query: 790 GKFYIFSTPAKGT 802 G+ + S G+ Sbjct: 508 GELTLESREGMGS 520 >gi|188026160|ref|ZP_02961099.2| hypothetical protein PROSTU_03091 [Providencia stuartii ATCC 25827] gi|188021856|gb|EDU59896.1| hypothetical protein PROSTU_03091 [Providencia stuartii ATCC 25827] Length = 922 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/262 (28%), Positives = 132/262 (50%), Gaps = 7/262 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS Q + L AE+ + KS FLA VSHE+RTPL IIG E+++ Sbjct: 421 DISIRVQMEKSLQDVADAAEQANHAKSMFLATVSHELRTPLYGIIGNIELLQRLELSDKA 480 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N +D S +L+L I++D+LD SKIES ++N+ ++ + + + ++ Sbjct: 481 N----RLVTTMDNSSSLLLQIISDILDFSKIESNQLNIEYKLFNCRDVFAFVLANYLPLV 536 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +K+I + + N+P +L +D ++Q+ NI++N+I FT SG + + Sbjct: 537 AKKQIALYSFIEPNVPDLLLSDAVRLQQVISNIINNSIKFTDSG--FVFFYVWRDENYLK 594 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + ++D+G+GM + + PF Q+ + + +GTGLGL + + +++ G + S Sbjct: 595 IEIKDSGIGMPQAVVLQLFDPFFQVHDQNNLGHKGTGLGLAICEKLINLMDGDIEVNSQI 654 Query: 799 AKGTLIEIIFPLYDTSHPHDCI 820 G+ I PLY + I Sbjct: 655 GLGSSFIIRIPLYGQKYTEHAI 676 >gi|293373825|ref|ZP_06620169.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292631224|gb|EFF49858.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 580 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/247 (33%), Positives = 129/247 (52%), Gaps = 28/247 (11%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL-GNPRYIEYAN 628 +L AK+ AE+ + KS F++ +SHEIRTPL AI+GFS +I G + N EYA+ Sbjct: 339 ELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLI----IGSVEQNNELKEYAD 394 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL--- 685 + + NL+L +++D+LDIS++ESGK+ ++E L I+L N + + Sbjct: 395 IVQTNSNLLLQLISDVLDISRLESGKLQFNYEWCELVNHCQNMITL----TNRNKTMDVD 450 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL-RVRDT 744 I+ + D ++QI +N+L+NA+ FTP+GG I + ++ +L V DT Sbjct: 451 IKLQMPKEPYMLYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVDEEKQCMLFSVTDT 510 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK---------AMVDANM--GKFY 793 G G+ + E + F ++ Q GTGLGL + K +D N G + Sbjct: 511 GTGIPEDKQELVFQRFEKLNEFVQ----GTGLGLAICKLTIQYMGGDIWIDKNYKNGARF 566 Query: 794 IFSTPAK 800 IFS P K Sbjct: 567 IFSHPIK 573 >gi|254562691|ref|YP_003069786.1| sensor protein gacS [Methylobacterium extorquens DM4] gi|254269969|emb|CAX25947.1| putative sensor protein gacS (Synonyms : lemA) [Methylobacterium extorquens DM4] Length = 914 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 125/243 (51%), Gaps = 7/243 (2%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + + L AK+ A++ ++ KS FLA +SHEIRTP+ ++ +E++ + PR Sbjct: 251 EIRLRTHDLIEAKQSADEANAAKSVFLATMSHEIRTPMNGMLVMAELLASADL----PPR 306 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 YA I RSG +L I+ND+LD +K+E+G++ + P+S + ++L A Sbjct: 307 QQRYAQVIARSGQSLLAIINDILDFAKVEAGRLEVERIPLSPRDVADTVVTLFAERARSA 366 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR- 740 + + ++PR +L D + Q+ N +SNA+ FT +G ++ +LR Sbjct: 367 GLDLAAQIDGDVPRSLLGDPVRLGQVLGNFVSNALKFTATGHVLVRMEMERDASGPVLRI 426 Query: 741 -VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ L F Q S R GTGLGL +A+ ++ A G+ + S Sbjct: 427 AVSDTGIGIPQDRLSGIFTAFTQADQSIARRFGGTGLGLSIAERLIAAMGGRVGVESCLG 486 Query: 800 KGT 802 +G+ Sbjct: 487 EGS 489 >gi|239827300|ref|YP_002949924.1| histidine kinase [Geobacillus sp. WCH70] gi|239807593|gb|ACS24658.1| histidine kinase [Geobacillus sp. WCH70] Length = 468 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 124/238 (52%), Gaps = 4/238 (1%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK IAE E K +FLA VSHE+RTPL+ + G+SE I R +Y I R Sbjct: 233 AKAIAE-EDMRKREFLANVSHELRTPLSYVKGYSEAILQGLVKTEEEER--KYVQLIHRE 289 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 + + +V DLLD++++E + L P+ + + + ++ + + +K+I + ++ Sbjct: 290 ADRMERLVRDLLDLARLEGNNVPLQKTPLVFAQVIEDTVAKYEPFLQKKQITLNMELDHD 349 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 I + D ++Q+ N+L NA+ +TP+ G+I I S+ L +RD+G G+ +L Sbjct: 350 II-LEGDADRLEQVVQNLLDNAVRYTPAEGKIHIRLKKVSDASCQLIIRDSGKGVPKEKL 408 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + F ++ ++ + GTGLGL + K ++ + G FS KG + I P+Y Sbjct: 409 PLLGQRFYRVDQARTRKEGGTGLGLAIVKQIISLHNGTISFFSEEGKGMEVVIQLPIY 466 >gi|167748521|ref|ZP_02420648.1| hypothetical protein ANACAC_03265 [Anaerostipes caccae DSM 14662] gi|167652513|gb|EDR96642.1| hypothetical protein ANACAC_03265 [Anaerostipes caccae DSM 14662] Length = 967 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 120/227 (52%), Gaps = 10/227 (4%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA-NYIDRSGNLVLDI 640 ++ KSDFL+R+SHEIRTP+ AIIG + +GN +E + I S +L + Sbjct: 447 NAAKSDFLSRMSHEIRTPMNAIIGMCTIAAQ----SIGNETKVEDCISKIGISSRYLLSL 502 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILA 699 +ND+LD+S+IESGKM L E + ++E ++ S+ A+ K + I + Sbjct: 503 INDILDMSRIESGKMLLKNEKIPMEEFINGINSICYAQADAKGVDYDCVVDPMIDDYYIG 562 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEVILR--VRDTGVGMTNYELEK 755 D ++Q+ +NI+ NA+ FT GG+I ST + +V LR + DTGVGM L Sbjct: 563 DAMKLQQVLINIIGNAVKFTEEGGKITFSTLRLKKTKNDVTLRFIINDTGVGMDEEFLPH 622 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + F Q GTGLGL ++K++VD G+ + S G+ Sbjct: 623 IFETFSQESTGITSVYGGTGLGLAISKSIVDMMDGRINVRSIKGVGS 669 >gi|158339071|ref|YP_001520248.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] gi|158309312|gb|ABW30929.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] Length = 1764 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 84/247 (34%), Positives = 129/247 (52%), Gaps = 17/247 (6%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY-IEY 626 K + A++ AE+ + KS FLA +SHE+RTPL AI+GFS++I P Y +E Sbjct: 1274 KQEAETAQRKAEQANRAKSIFLANMSHELRTPLNAILGFSQLISRDP----STPNYQLEQ 1329 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I+RSG +L ++ND+L +SKIE+G+ +L + V L + +++ L A +K + + Sbjct: 1330 LEIINRSGEHLLALINDVLTMSKIEAGRSSLRSQIVDLPLLLDTVENMLGLKAEKKGLKL 1389 Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE-------- 736 P I D ++Q+ +N+LSNAI FT SG Q+ + + E Sbjct: 1390 IFDRGLTPPHYIRTDPGKLRQVLMNLLSNAIKFTTSGHVQLCLESNTLDTPEGAGVPPLL 1449 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V V DTG G+ EL+ +PF Q +Q + EGTGLGL +++ V G Sbjct: 1450 DVRFTVSDTGSGIAPEELKLLFEPFAQTETGRQSQ-EGTGLGLAISRQFVQIMGGNLTAH 1508 Query: 796 STPAKGT 802 S +GT Sbjct: 1509 SIHNQGT 1515 >gi|254285757|ref|ZP_04960720.1| sensor histidine kinase LuxQ [Vibrio cholerae AM-19226] gi|150424254|gb|EDN16192.1| sensor histidine kinase LuxQ [Vibrio cholerae AM-19226] Length = 857 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/262 (29%), Positives = 135/262 (51%), Gaps = 9/262 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ + + + A++ AE+ + +++FLA++SHE+RTPL ++G S+++K PL Sbjct: 454 QDITTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT---PL 510 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N E+ + SG +L ++ND+LD S++E GK + L E V + + Sbjct: 511 -NDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPL 569 Query: 679 ANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-- 735 NEK + L+ S + +D + QI N+L+NAI FT G I + + Sbjct: 570 CNEKGLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGDPL 628 Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +++++V DTG+G+ +L +PF Q ++ G+GLGL + ++V+ G+ ++ Sbjct: 629 AQLVIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHV 688 Query: 795 FSTPAKGTLIEIIFPLYDTSHP 816 S GT EI P+ P Sbjct: 689 SSEYGIGTRFEIQLPIELVEKP 710 >gi|303248672|ref|ZP_07334926.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302489928|gb|EFL49854.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 819 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 131/262 (50%), Gaps = 16/262 (6%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK---N 612 L + S+ + +L+ A + + KS FL+ VSHE+RTPLT+++GFS++I + Sbjct: 416 LVIERTSDLTAKARELTEANERLRDMDAIKSAFLSSVSHELRTPLTSLLGFSKLIDRDFS 475 Query: 613 QRFGPLG---------NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 + F PL R IE + G + ++ND LD+S+IESG+M PV Sbjct: 476 RFFLPLAADDPVLAKRGGRIIENLRVLSVEGERLARLLNDFLDLSRIESGRMEWRDRPVE 535 Query: 664 LDEAVSEAISLVQ-LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 L E V ++ V L+A+ + + + P ++AD ++Q+ LN++ NA FT + Sbjct: 536 LAEVVKNTLAAVSGLFASRPEVDLESLLPEASPVVVADPDRLEQVLLNLIGNAAKFT-AV 594 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ--IRGEGTGLGLPL 780 G + +S + VRDTG G+ + E+ F Q+ + +GTGLGL + Sbjct: 595 GAVTVSLDAPCPGVARVTVRDTGPGIAPEDRERIFDKFRQVRRDPEGSAPAKGTGLGLAI 654 Query: 781 AKAMVDANMGKFYIFSTPAKGT 802 + +V G ++ PA+G Sbjct: 655 CREIVTHYGGSIWVEPAPARGA 676 >gi|260770504|ref|ZP_05879437.1| periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii CIP 102972] gi|260615842|gb|EEX41028.1| periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii CIP 102972] Length = 807 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 120/243 (49%), Gaps = 7/243 (2%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK AE + KS F++ +SHEIRTP+ +I+G S ++ I I Sbjct: 458 LKDAKLQAENANMAKSQFISNISHEIRTPMNSILGMSHLLMTSNLSDDQRNHLIT----I 513 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 D+SG +L ++ND+LD+SKI++GK+++ P L V + + + A + + + Sbjct: 514 DKSGKHLLSLINDILDMSKIDAGKVDIEEIPFDLAALVYDVHDIFEYKAKKHGVKLHLDL 573 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTGVG 747 ++P +L D +KQI LN +SNAI FT G I ++E V L V D G+G Sbjct: 574 DKSLPPLLGDPFRIKQIMLNFVSNAIKFTEQGDVTIRVQGAVTSESVFALRLSVEDNGIG 633 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 ++ + K + F Q S + GTGLGL + K + G+ + S G+ + Sbjct: 634 LSTDDQMKVFESFQQADASTTRKYGGTGLGLAICKRIAHLMGGEVGVESRLGDGSTFWLT 693 Query: 808 FPL 810 L Sbjct: 694 LDL 696 >gi|302670459|ref|YP_003830419.1| two component system histidine kinase [Butyrivibrio proteoclasticus B316] gi|302394932|gb|ADL33837.1| two component system histidine kinase [Butyrivibrio proteoclasticus B316] Length = 1148 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 132/250 (52%), Gaps = 17/250 (6%) Query: 563 EWK--QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 EW +E + + E+ + ++ F + +SHEIRTP+ +I+G +E+I Q + Sbjct: 182 EWMFIEENKRAKEETRKFEELNKSQNRFFSSMSHEIRTPINSILGLNEIILRQEDA---S 238 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + A I +G ++L +VND+LDISKIE+GKM++ S+ +SE ++++ L A Sbjct: 239 DEIKKDAGNIQGAGRMLLALVNDILDISKIEAGKMDIIPVNYSVSSLISEVVNMMWLRAE 298 Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 +K + + +P+ + D +KQI +N+L+NA+ +T G T H E+ Sbjct: 299 QKGLTLNVEIDPTLPQELFGDEVRIKQILVNLLNNAVKYTNEG----TVTLHIEKEDIKE 354 Query: 737 ----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 +I V DTG+G+ + F +I + + EGTGLGL + K +V+ G+ Sbjct: 355 EKVRIIFSVSDTGMGIKEDSIPYLFDAFQRIDEEKNTKIEGTGLGLSIVKQLVELMDGEI 414 Query: 793 YIFSTPAKGT 802 + S A+G+ Sbjct: 415 SVNSVYAQGS 424 >gi|256828552|ref|YP_003157280.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577728|gb|ACU88864.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 869 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 126/250 (50%), Gaps = 9/250 (3%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DI++ K + L AK+ AE S KS+FLA +SHEIRTPL ++G ++++ G Sbjct: 465 VQDITDRKNAEQALERAKEAAESASQAKSEFLANMSHEIRTPLNGVMGILQLLETSAEG- 523 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 ++ +S N + +++D+LD+S++E+GK+++ EP L E + + + L Sbjct: 524 ---QEQKQFCTLALQSANRLNRLLSDILDLSRVEAGKLHIQSEPFRLHETLVQVLDLFVP 580 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII----ISTTHT 732 A + + +R +P I+ D ++Q+ N++ NA FT +G + + H Sbjct: 581 TAVQSGVELRHHVDPGLPNSIVGDPIRLQQVLGNLIGNAFKFTTTGYVNVEAYPLPAKHP 640 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + V DTG G+++ +L+ PF Q+ +G GLGL + K +V G Sbjct: 641 GQLRIFFSVSDTGCGISDKDLKNLFTPFTQVSQGYAKSHQGAGLGLSICKHLVTLMGGNM 700 Query: 793 YIFSTPAKGT 802 + S GT Sbjct: 701 AVESETGVGT 710 >gi|330828889|ref|YP_004391841.1| Virulence sensor protein BvgS [Aeromonas veronii B565] gi|328804025|gb|AEB49224.1| Virulence sensor protein BvgS, putative [Aeromonas veronii B565] Length = 1414 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/259 (30%), Positives = 137/259 (52%), Gaps = 9/259 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DI+ KQ++++L A+ AE+ +S FLA +SHE+RTP++ + G E+++ Sbjct: 793 VVQDITAIKQQEHELREARAAAEQAMQARSLFLATMSHELRTPISGMHGMLELLRMSELN 852 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + RY+ ++ S N +L +VND+LD SKIE+G+++L+ + L V + I Sbjct: 853 D--DQRYL--LRNVESSANHLLYLVNDILDFSKIEAGQLHLNRQSCRLQPVVCDVIRGHA 908 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVK--QIALNILSNAIHFTPSGGQIIISTTHTSN 734 A K + + + + +P LAD+ V+ Q+ N+L+NA+ FT G I + H + Sbjct: 909 ALAYSKGLKVTLQWEDQLPD-LADIDPVRVGQVVSNLLNNAVKFTEQGAISIQVSCH--D 965 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +++++ V DTG+G+ + K PF Q+ + R GTGLGL + +V G + Sbjct: 966 QQLVIAVTDTGIGIAEEKQAKLFTPFEQVESDINRRFGGTGLGLAICDQLVKKMGGTLTV 1025 Query: 795 FSTPAKGTLIEIIFPLYDT 813 S +G PL + Sbjct: 1026 KSQLGEGACFRFSIPLLNV 1044 >gi|255530387|ref|YP_003090759.1| ATPase [Pedobacter heparinus DSM 2366] gi|255343371|gb|ACU02697.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM 2366] Length = 719 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/239 (33%), Positives = 123/239 (51%), Gaps = 17/239 (7%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR---SGNLVL 638 + K D L R+SHEIR PL AI GF V E ID S +++L Sbjct: 338 AQQKMDLLNRMSHEIRNPLNAIKGFLYVFSRTNLSK-------EQTTMIDSIKLSSDMLL 390 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++D LD SK+E+ + ++ EP + D + + I ++ A EK + I ++ N I+ Sbjct: 391 QTLDDTLDASKMENSEFKINKEPFNPDLTLRKVIQNMEYGAAEKNLNIAYFYSGNSEAIV 450 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D +KQI +N+LSNAI +T GG II T SN+++ + V+DTG G++ LE+ Sbjct: 451 NGDSFRLKQILVNLLSNAIKYTKEGG--IIVTAEMSNDKLYVAVKDTGAGIS---LEQQS 505 Query: 758 KPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 F + + +G+ GTGLGL + K +V+ GK ++ STP G+ P H Sbjct: 506 GLFSKYYQTNSSKGQTGTGLGLFICKQLVELQNGKIHVESTPGIGSTFSFYIPYKKAEH 564 >gi|24375489|ref|NP_719532.1| sensory transduction histidine kinase [Shewanella oneidensis MR-1] gi|24350346|gb|AAN56976.1|AE015830_11 sensory transduction histidine kinase [Shewanella oneidensis MR-1] Length = 1689 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 132/254 (51%), Gaps = 11/254 (4%) Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 C++L DI++ K + +L+ AK A+ + KSDFLA +SHEIRTP+ AIIG S + Sbjct: 927 CWAL---DITQEKAIQAELASAKLQADAANRAKSDFLANMSHEIRTPMNAIIGMSYLALQ 983 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + +Y + ++ +L+I+ND+LD SKIE+ K+ + LDE +++ Sbjct: 984 TDLA----EKRKDYIAKVHQAAGSLLNIINDILDFSKIEANKLTVEHIEFDLDEVLTQLN 1039 Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 +++ E + + A + PR + D + + QI LN +NA+ F+P G I++S Sbjct: 1040 NVIGFKVEENSMRLIYDIATDCPRYFIGDPQRLGQILLNYCNNAVKFSPKGSDILLSCQA 1099 Query: 732 TSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 +++ + V D G+G+ + + F Q S + GTGLGL + K + + Sbjct: 1100 ELDKQGATLTFCVADDGIGIPLDKQARLFHSFEQGDTSTSRKYGGTGLGLAICKRLSELM 1159 Query: 789 MGKFYIFSTPAKGT 802 G+ + S +G+ Sbjct: 1160 QGEVWCESELGQGS 1173 >gi|54302830|ref|YP_132823.1| hypothetical protein PBPRB1151 [Photobacterium profundum SS9] gi|46916254|emb|CAG23023.1| hypothetical protein PBPRB1151 [Photobacterium profundum SS9] Length = 578 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 131/234 (55%), Gaps = 10/234 (4%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK+ AEK ++ KS FLA +SHEIRTPL IIG S ++ + NP EY I+ S Sbjct: 50 AKEEAEKANAAKSSFLANMSHEIRTPLNGIIGMSGILSDTEL----NPSQAEYLQTIETS 105 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 +L ++ND+LD+SKIESG + L +L E V + I++VQ A+E+ + ++ Sbjct: 106 SQTLLLLINDILDLSKIESGNLVLSPHESNLAEVVYDTITIVQAKASEQGLNLQIQLDPE 165 Query: 694 IP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVILRVRDTGVGM 748 +P ++ D ++Q+ +N++SNA+ FT G + +S T+T ++ ++DTG+G+ Sbjct: 166 LPTSVMLDEHRLRQVLMNLMSNAVKFTLQGS-VTLSITYTDIGDKKASLLFSIKDTGIGI 224 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + ++ PF Q S + GTGLGL + + +V+ G + S G+ Sbjct: 225 EKDKQQQVFAPFTQEDGSITRQFGGTGLGLAICRQLVELLGGSIELKSEKGVGS 278 >gi|15601492|ref|NP_233123.1| sensor histidine kinase LuxQ [Vibrio cholerae O1 biovar eltor str. N16961] gi|121585608|ref|ZP_01675404.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae 2740-80] gi|153819423|ref|ZP_01972090.1| sensor histidine kinase LuxQ [Vibrio cholerae NCTC 8457] gi|153820666|ref|ZP_01973333.1| sensor histidine kinase LuxQ [Vibrio cholerae B33] gi|227812303|ref|YP_002812313.1| sensor histidine kinase LuxQ [Vibrio cholerae M66-2] gi|229506107|ref|ZP_04395616.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae BX 330286] gi|229510036|ref|ZP_04399516.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae B33] gi|229516403|ref|ZP_04405850.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae RC9] gi|229605638|ref|YP_002876342.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae MJ-1236] gi|254849896|ref|ZP_05239246.1| sensor histidine kinase LuxQ [Vibrio cholerae MO10] gi|262152398|ref|ZP_06028531.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae INDRE 91/1] gi|298499532|ref|ZP_07009338.1| sensor histidine kinase LuxQ [Vibrio cholerae MAK 757] gi|50401170|sp|Q9KLK7|LUXQ_VIBCH RecName: Full=Autoinducer 2 sensor kinase/phosphatase luxQ gi|9658157|gb|AAF96635.1| sensor histidine kinase LuxQ [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121550225|gb|EAX60239.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae 2740-80] gi|126510031|gb|EAZ72625.1| sensor histidine kinase LuxQ [Vibrio cholerae NCTC 8457] gi|126521709|gb|EAZ78932.1| sensor histidine kinase LuxQ [Vibrio cholerae B33] gi|227011445|gb|ACP07656.1| sensor histidine kinase LuxQ [Vibrio cholerae M66-2] gi|229346284|gb|EEO11255.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae RC9] gi|229352481|gb|EEO17421.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae B33] gi|229356458|gb|EEO21376.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae BX 330286] gi|229372124|gb|ACQ62546.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae MJ-1236] gi|254845601|gb|EET24015.1| sensor histidine kinase LuxQ [Vibrio cholerae MO10] gi|262030849|gb|EEY49480.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae INDRE 91/1] gi|297541513|gb|EFH77564.1| sensor histidine kinase LuxQ [Vibrio cholerae MAK 757] Length = 857 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/262 (29%), Positives = 135/262 (51%), Gaps = 9/262 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ + + + A++ AE+ + +++FLA++SHE+RTPL ++G S+++K PL Sbjct: 454 QDITTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT---PL 510 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N E+ + SG +L ++ND+LD S++E GK + L E V + + Sbjct: 511 -NDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPL 569 Query: 679 ANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-- 735 NEK + L+ S + +D + QI N+L+NAI FT G I + + Sbjct: 570 CNEKGLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGDPL 628 Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +++++V DTG+G+ +L +PF Q ++ G+GLGL + ++V+ G+ ++ Sbjct: 629 AQLVIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHV 688 Query: 795 FSTPAKGTLIEIIFPLYDTSHP 816 S GT EI P+ P Sbjct: 689 SSEYGIGTRFEIQLPIELVEKP 710 >gi|303245671|ref|ZP_07331954.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492934|gb|EFL52799.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 818 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/256 (29%), Positives = 134/256 (52%), Gaps = 15/256 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGP 617 +I E ++ KL+ A+K A + S KS FLA +SHEIRTPL I+G +++ ++ G Sbjct: 264 REIEEHERTARKLTAARKKASQASKAKSIFLANMSHEIRTPLNVILGMADLALRPDSQGQ 323 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + + R +E I +G + ++ DLLD+S+IE+G+++L P S + A+S + Sbjct: 324 VDHVRALE---MIREAGASLRALLGDLLDLSRIEAGRLDLESIPFSPSRVLDAALSGHAV 380 Query: 678 YANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A + + + A+++P L D + Q+ N++ NA+ FTP+G + ++E Sbjct: 381 LAARQGLALEGHVASDVPETLVGDPGRLGQVLANLIGNALKFTPAGRIDVFVRRGDGDKE 440 Query: 737 ----------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 ++ VRDTGVG+ + + + F Q S + GTGLGL + + +V Sbjct: 441 GGCPEPEVVTLLFSVRDTGVGIDPEKRKAIFQSFRQADESITRQYGGTGLGLAICRRLVG 500 Query: 787 ANMGKFYIFSTPAKGT 802 G+ + S P +G+ Sbjct: 501 LLGGRIRVASRPGEGS 516 >gi|229514185|ref|ZP_04403646.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae TMA 21] gi|229348165|gb|EEO13123.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae TMA 21] Length = 857 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/262 (29%), Positives = 135/262 (51%), Gaps = 9/262 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ + + + A++ AE+ + +++FLA++SHE+RTPL ++G S+++K PL Sbjct: 454 QDITTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT---PL 510 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N E+ + SG +L ++ND+LD S++E GK + L E V + + Sbjct: 511 -NDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPL 569 Query: 679 ANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-- 735 NEK + L+ S + +D + QI N+L+NAI FT G I + + Sbjct: 570 CNEKGLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGDPL 628 Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +++++V DTG+G+ +L +PF Q ++ G+GLGL + ++V+ G+ ++ Sbjct: 629 AQLVIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHV 688 Query: 795 FSTPAKGTLIEIIFPLYDTSHP 816 S GT EI P+ P Sbjct: 689 SSEYGIGTRFEIQLPIELVEKP 710 >gi|332995149|gb|AEF05204.1| sensory box histidine kinase/response regulator [Alteromonas sp. SN2] Length = 861 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/277 (28%), Positives = 134/277 (48%), Gaps = 14/277 (5%) Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + ++L + L L + +++ EK AK A K+DFLAR+ Sbjct: 307 ARTKHFIALGFAVAALFLIGLAYLLIRLLNQLNLEKELAIKAKNKANSAEKSKADFLARM 366 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR---SGNLVLDIVNDLLDISK 649 SHEIRTP+ + G ++ LG Y + + I++ S +L+ I++D+LD SK Sbjct: 367 SHEIRTPMNGVYGLLQI-------TLGERNYKKINDNIEQAITSFSLLSRIIDDVLDFSK 419 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIA 708 IE+GK+++ P LD +++ ++ A K I + P+ ++ D + Q+ Sbjct: 420 IEAGKLDMVEAPFRLDSLLNQVGKMMGRAAYGKHIELWIDVDPKCPQHVVGDAVRLNQVI 479 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTGVGMTNYELEKAMKPFGQIPN 765 N++SNAI FT G + NE+ + V+DTG+GMT + + F Q Sbjct: 480 SNLISNAIKFTSRGEVNLSVELLNENEDTVQLGFEVQDTGIGMTEKQANQVFGAFTQASR 539 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + GTGLGL +AK +V+ GK + S KG+ Sbjct: 540 DTNSKFGGTGLGLSIAKQLVEMMHGKIGVVSQQGKGS 576 >gi|301061389|ref|ZP_07202161.1| PAS domain S-box protein [delta proteobacterium NaphS2] gi|300444513|gb|EFK08506.1| PAS domain S-box protein [delta proteobacterium NaphS2] Length = 595 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 85/284 (29%), Positives = 147/284 (51%), Gaps = 15/284 (5%) Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK------LSHAKKIAEKESSHKSDF 588 EE L + I++ +P L H + +N+ L ++ + E+ + DF Sbjct: 310 EETLAARDTIVRDIPMGDEGLLNGHGTILRDEAENQIGALFVLDDVTRLRKLENIRR-DF 368 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDI 647 ++ VSHEI+TP+TAI GF E +++ G + NP E + I++ + + I+ DLL++ Sbjct: 369 VSNVSHEIKTPITAIKGFVETLRD---GSVKNPADAERFLGIIEKHVDRLEAIIEDLLNL 425 Query: 648 SKIE--SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705 SKIE SGK L + + + A+ + + E+ I I S A ++ + D ++ Sbjct: 426 SKIEQTSGKEGLSLVESQMVDIIHNALQICHVAIAEREIEIDVSCAESVT-LKVDPTLLE 484 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 Q +N+L NA+ ++ +GG I IS T S + + VRD GVG+ L + + F ++ Sbjct: 485 QALVNLLDNAVKYSDTGGTIHISVTEESGS-ITIAVRDHGVGINKKHLPRLFERFYRVDK 543 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ + GTGLGL + K +V A+ G + STP +G+ I P Sbjct: 544 ARSRQLGGTGLGLAIVKHVVQAHGGHITVESTPGEGSTFSIHLP 587 >gi|120601684|ref|YP_966084.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] gi|120561913|gb|ABM27657.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] Length = 1000 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/261 (30%), Positives = 131/261 (50%), Gaps = 11/261 (4%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L D++ + L +KK AE ++ K++FLA +SHEIRTPL I+G +++ + Sbjct: 582 LAAVDVTVQSETMRALQRSKKAAESANAAKTEFLANMSHEIRTPLNGIMGMMQLLVST-- 639 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 PL + + +N I SG L +++D+LD+S+IE+G + L E V+ E + L Sbjct: 640 -PLDDEQKQYVSNAISSSGRLS-QLLSDVLDLSRIEAGGLVLRDECVTPSELLDAIKDLF 697 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS----TT 730 L ++ + + +P+ IL D ++QI N++ NA+ FT G I + Sbjct: 698 TLGTRSSQVELALEISPGLPQHILLDGGRLRQILFNLVGNALKFTEK-GHIHVRLDELAI 756 Query: 731 HTSNEEVIL-RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 H +++L V DTG+G+ + PF Q+ S R G GLGL + + +V A Sbjct: 757 HGGMRQLLLISVEDTGIGIPQGAMRDIFNPFYQVDGSHVRRQGGVGLGLSIVRRLVIAMG 816 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G I S +GT I + P Sbjct: 817 GALCIDSAEGEGTRIHLSLPF 837 >gi|261251233|ref|ZP_05943807.1| sensor protein TorS [Vibrio orientalis CIP 102891] gi|260938106|gb|EEX94094.1| sensor protein TorS [Vibrio orientalis CIP 102891] Length = 959 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 127/241 (52%), Gaps = 7/241 (2%) Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 + A+ +AE+ S KS FLA +SHEIRTP+ ++G + ++K+ + + Y + I+ Sbjct: 457 ARARSLAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLKDAGL----DSKQGYYVDVIN 512 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 RSG +L I+ND+LD SKIE+G + + +L V + L+ A EK + + + Sbjct: 513 RSGTTLLAILNDVLDYSKIEAGHLEIRPIDFNLYSMVDDTKHLLDGRAKEKSLELACTIE 572 Query: 692 NNIPRIL-ADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEEVILRVRDTGVGMT 749 +++ + D+ + Q+ N++ NAI FT G I +S + V+ V D+GVG++ Sbjct: 573 SDVDKFWRGDVTRISQVLNNLVGNAIKFTDRGYVDIYVSLDPDLDGNVLFEVSDSGVGIS 632 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 E F Q +G GTGLGL ++K +V+A GK + S +G+ P Sbjct: 633 EQEQVTLFDAFTQATGGLSSKG-GTGLGLAISKRIVEAMNGKLLVESHVGEGSRFWFSIP 691 Query: 810 L 810 L Sbjct: 692 L 692 >gi|261493613|ref|ZP_05990133.1| histidine kinase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495451|ref|ZP_05991899.1| histidine kinase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308956|gb|EEY10211.1| histidine kinase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310795|gb|EEY11978.1| histidine kinase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 616 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/262 (27%), Positives = 135/262 (51%), Gaps = 9/262 (3%) Query: 543 IIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 ++++KL S + D+ E + E++ +AK EK S KS +A +SHE+RTPL Sbjct: 74 LLVEKLEISRLKLEKAVRDLEELR-EQDAYLNAK--LEKNSRDKSILMATISHELRTPLN 130 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 IIG S+++ + + + EY I+ S + I D++D+ KI+S ++ L + Sbjct: 131 GIIGLSQILLDDK----TTEKQQEYLKTINMSATALAHIFGDIIDLEKIDSSRIELVRKE 186 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTP 720 V ++ + + + A K+I + ++P+ I D + QI N++SNA+ FTP Sbjct: 187 VEFEQLIHDIANFGHFMAGNKQINFEVKYPPDLPKYIYIDHARLSQILWNLISNAVKFTP 246 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 + G+I++ E+ V D+G+G+ + K F Q NS++ + +G+G+GL + Sbjct: 247 ASGRILLEIYQLDKEQFSFAVTDSGIGIPEKDQRKIFDMFYQAENSKEKKAQGSGIGLSV 306 Query: 781 AKAMVDANMGKFYIFSTPAKGT 802 +K + G + S +G+ Sbjct: 307 SKRIAKLMGGDLVVASQENQGS 328 >gi|153824379|ref|ZP_01977046.1| sensor histidine kinase LuxQ [Vibrio cholerae MZO-2] gi|149741933|gb|EDM55962.1| sensor histidine kinase LuxQ [Vibrio cholerae MZO-2] Length = 857 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/262 (29%), Positives = 135/262 (51%), Gaps = 9/262 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ + + + A++ AE+ + +++FLA++SHE+RTPL ++G S+++K PL Sbjct: 454 QDITTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT---PL 510 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N E+ + SG +L ++ND+LD S++E GK + L E V + + Sbjct: 511 -NDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPL 569 Query: 679 ANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-- 735 NEK + L+ S + +D + QI N+L+NAI FT G I + + Sbjct: 570 CNEKGLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGDPL 628 Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +++++V DTG+G+ +L +PF Q ++ G+GLGL + ++V+ G+ ++ Sbjct: 629 AQLVIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHV 688 Query: 795 FSTPAKGTLIEIIFPLYDTSHP 816 S GT EI P+ P Sbjct: 689 SSEYGIGTRFEIQLPIELVEKP 710 >gi|149377367|ref|ZP_01895112.1| Signal transduction histidine kinase [Marinobacter algicola DG893] gi|149358379|gb|EDM46856.1| Signal transduction histidine kinase [Marinobacter algicola DG893] Length = 1173 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 121/238 (50%), Gaps = 14/238 (5%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY-----ANY 629 K++A + KS FLA +SHEIRTPL AIIG+ E L +P E A Sbjct: 555 KELARNSAEAKSQFLANMSHEIRTPLAAIIGYGET--------LLDPDLTEREKHTSAET 606 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + RSG +LD++ND+LD SKI++ K+++ V+L E + E + A EK + Sbjct: 607 VVRSGRHLLDLINDILDHSKIDANKLDVDIVSVNLPELLDEIRAFFAPRAREKGLAFHII 666 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 +P +I D +QI +N+ NA+ FT G + + ++ RV DTG+GM Sbjct: 667 CEYPLPEKISTDPTRFRQIIINLCGNALKFTEKGSISLNVRCDRQRQALVARVVDTGIGM 726 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 +L + PF Q + + GTGLGL +++ + + G + ST +G+ E+ Sbjct: 727 KPEQLGRLFDPFAQGSAAIARQYGGTGLGLSISRRLAELLGGNISVTSTYGEGSEFEL 784 >gi|94264437|ref|ZP_01288226.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455127|gb|EAT05349.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 399 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 131/253 (51%), Gaps = 17/253 (6%) Query: 563 EWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 E ++ +L A AE+ + KS+FLA +SHEIRTP+ +IG + ++ ++ Sbjct: 137 ELRESNRRLEEAAVQAEELAREAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLSEDL 196 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + Y I SG +L+++N +LD SKIE+G++ L + P S E V E + L+ Sbjct: 197 ----TAEQLSYVKVIITSGEALLELINQILDFSKIEAGRLELDYRPFSPRELVQEVVLLL 252 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 Q A + + + + ++P I+ D ++Q+ LN++ NAI FT GG I + ++ Sbjct: 253 QPQAAAQNLALTCEISPSLPAIVEGDPVRLRQVLLNLVGNAIKFTEVGGVAIELSPAPAD 312 Query: 735 EEVI-----LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 V+D+G+G+ +++ + F Q+ S + GTGLGL + + +V+ Sbjct: 313 PAAPDFSCHFAVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGLGLAICRRLVELMG 372 Query: 790 GKFYIFSTPAKGT 802 G+ + S KG+ Sbjct: 373 GEVGVESEVGKGS 385 >gi|91223693|ref|ZP_01258957.1| sensor histidine kinase/response regulator [Vibrio alginolyticus 12G01] gi|91191185|gb|EAS77450.1| sensor histidine kinase/response regulator [Vibrio alginolyticus 12G01] Length = 573 Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 130/242 (53%), Gaps = 7/242 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L+ A++ AE + KS+FLA +SHEIRTPL +++G +++K + I+ + Sbjct: 200 QLAKAREEAELANRSKSEFLAMMSHEIRTPLNSVLGMLDILKQSTL----SEEQIDALSQ 255 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV-QLYANEKRILIRT 688 ++ S L+L I++D+LD+SKIESG+ L+ + ++L + V+ IS Q+ + Sbjct: 256 MECSAELLLAIISDILDLSKIESGRFQLNEQWINLRDTVTFVISQQKQIAKKKNLKFKLN 315 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 N + D + QI N++ NAI FT G++ +S + + E+++ + DTG+G+ Sbjct: 316 CTVTNDKQFWIDSTRLSQILFNLIGNAIKFTDE-GEVKVSVSE-QDAELVISISDTGIGI 373 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + E F Q S R GTGLGL + K +V+ GK + S G+ I Sbjct: 374 SKAKQEHLFTAFHQGDRSITRRFGGTGLGLAITKHLVEMMRGKIAVKSDEHVGSTFTISI 433 Query: 809 PL 810 P+ Sbjct: 434 PV 435 >gi|224537976|ref|ZP_03678515.1| hypothetical protein BACCELL_02865 [Bacteroides cellulosilyticus DSM 14838] gi|224520413|gb|EEF89518.1| hypothetical protein BACCELL_02865 [Bacteroides cellulosilyticus DSM 14838] Length = 806 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 129/253 (50%), Gaps = 14/253 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +DI+ K+ + KL A+ AE+ KS FLA +SHEIRTPL +I+GFS ++ Sbjct: 565 YDITPLKETEQKLIIARDKAEELDRLKSAFLANMSHEIRTPLNSIVGFSSLLAETD---- 620 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 EY ++ + L+L +V+D+LD+SKIESG + + ++E+ + I +++ Sbjct: 621 DREERQEYIKIVETNNELLLQLVSDILDLSKIESGTFDFVRSDLDVNESCMKIIKSMEMK 680 Query: 679 ANEKRILIRTSFANNIP--RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 E L+ F +P I D Q+ N ++NA+ FT G I + T+ E Sbjct: 681 VPETVDLV---FEKYMPDCHIYTDKNRFMQVITNFINNALKFTKQ-GTIALGYEQTAPHE 736 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + VRDTG G+ +++ + F ++ Q GTGLGL + K++V GK + S Sbjct: 737 IKFYVRDTGFGIPKEKIDSIFERFVKLNTFVQ----GTGLGLSICKSLVSQMGGKIGVES 792 Query: 797 TPAKGTLIEIIFP 809 T +G+ P Sbjct: 793 TEGEGSCFWFTHP 805 >gi|153808539|ref|ZP_01961207.1| hypothetical protein BACCAC_02834 [Bacteroides caccae ATCC 43185] gi|149128861|gb|EDM20078.1| hypothetical protein BACCAC_02834 [Bacteroides caccae ATCC 43185] Length = 622 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/254 (31%), Positives = 132/254 (51%), Gaps = 17/254 (6%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI++ K+ + L AK+ AE+ KS FLA +SHEIRTPL AI+GFS +++ Sbjct: 382 DITQLKETERMLIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSMLQEA-----D 436 Query: 620 NP-RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 NP ++Y I+ + +L +++D+LD+SKIE+G + FE V+ +E +Q+ Sbjct: 437 NPEEKLQYVTIIEENNKRLLQLISDILDLSKIEAGTFDFTFEKVNAKRLCNELYQAMQMR 496 Query: 679 ANEKRILIRTSFANNIP--RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 + + + + ++P ++ +D + Q+ N + NA+ FT S G I IS +E Sbjct: 497 TSPQ---VELRLSPDLPDLQLTSDKSRLYQVLSNFVVNALKFT-SEGSITIS-YQIKGKE 551 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V DTG+G+ E EK F + GTGLGL + ++++ GK + S Sbjct: 552 AKFSVEDTGIGI---EPEKQTAVFNRFVKLNNFI-PGTGLGLSICQSIITQLGGKIGVDS 607 Query: 797 TPAKGTLIEIIFPL 810 P KG+ PL Sbjct: 608 EPGKGSCFWFTHPL 621 >gi|160896955|ref|YP_001562537.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1] gi|160362539|gb|ABX34152.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1] Length = 1303 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/286 (29%), Positives = 137/286 (47%), Gaps = 23/286 (8%) Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 E + L R ++ + M DI+ ++ + L AK+ AE KSDFLA +SH Sbjct: 476 EIRWLRCRSAPRRCQEGMVWDGIMLDITREREAEQALQQAKEAAEAAERAKSDFLAIMSH 535 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 EIRTP+ +IG + +++ R Y ++RS + +L ++ND+LD SKIE+G Sbjct: 536 EIRTPMNTVIGMTRLVQQTAL----TSRQRGYLEKVERSASALLAVINDILDFSKIEAGM 591 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILS 713 + L +LD+ + + L A EK + + + + PR+ D + Q+ N++ Sbjct: 592 LVLEEVDFALDDVLETVTASTALRAEEKGLEVVYALDPQLPPRLRGDPMRLGQVLTNLVG 651 Query: 714 NAIHFTPSGGQIIIS-----------------TTHTSNEEVILRVRDTGVGMTNYELEKA 756 NA+ FT G+++IS TT + + VRDTG+G+ E+ Sbjct: 652 NAVKFTEH-GEVVISLHLAPPPVDAPADADADTTAAPLHHLCVSVRDTGIGLDASRAERL 710 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +PF Q R GTGLGL + +V G+ + S P +G+ Sbjct: 711 FQPFTQADIQTTRRHGGTGLGLAICHRLVQLMGGEIGVRSQPGQGS 756 >gi|117618541|ref|YP_856712.1| PAS [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559948|gb|ABK36896.1| PAS [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1323 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 104/384 (27%), Positives = 173/384 (45%), Gaps = 31/384 (8%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +++ E ++ QL LE + DG+ I + + I N A GY +++ + ++ Sbjct: 551 RKQAEQQLRQLSLALEQSPDGVFITDTQARIEYVNVAFLAASGYQQSEVIGQTPSLLRSG 610 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITL--GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561 TP L + + R E I + + L ++ I ++ + Y DI Sbjct: 611 LTPKATYIALWDAIKRGQRWHGEFINRRKDGSHYQVLATVSPIRQENGAVTHYVTVQADI 670 Query: 562 SEWKQ-----------------EKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 +E KQ E+ +L+ A + AE + KS FLA +SHEIRTP+ AI Sbjct: 671 TEKKQLGEELDQYRYHLEEMVNERTLQLAQAHQRAESANRAKSAFLANMSHEIRTPMNAI 730 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANY--IDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 +G + ++K P + + ID + +L I+ND+LD+SKI++GKM L Sbjct: 731 LGLTYLLKRD------TPDHTQQDRLEKIDNAAQHLLTIINDILDLSKIDAGKMALEQSD 784 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 SL + +L+ A K + I + + D+ ++Q LN +NAI FT Sbjct: 785 FSLTAMLDNVSALMSEQARAKGLTIIVDIGDTPAWVHGDITRLRQALLNYAANAIKFTEQ 844 Query: 722 GGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 G + + H +LR V DTG+G++ + EK + F Q S + GTGLGL Sbjct: 845 GSVTLRVRVDHPLAGGYLLRFEVEDTGIGISPEQSEKLFQAFEQADVSTTRKYGGTGLGL 904 Query: 779 PLAKAMVDANMGKFYIFSTPAKGT 802 + + G+ + ST KG+ Sbjct: 905 AITSRLATLMGGEVGVTSTLGKGS 928 >gi|254380439|ref|ZP_04995805.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces sp. Mg1] gi|194339350|gb|EDX20316.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces sp. Mg1] Length = 1378 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/261 (29%), Positives = 134/261 (51%), Gaps = 7/261 (2%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ++ + + + A+++AE + + K+ F + +SHE RTPLT I+G E ++++ + Sbjct: 321 VASARSYQAQQRRAEELAELDRA-KTTFFSNISHEFRTPLTLIMGPVEELRDRLTD--AD 377 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P E + R+G + +VN LLD S+IE+G+M H+EPV L E S+ + + Sbjct: 378 PGLREELEVVHRNGLRLGKLVNTLLDFSRIEAGRMQAHYEPVDLARVTGELASVFRSAVD 437 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + + R + + D +++ LN+LSNA+ FT G I ++ Sbjct: 438 KAGLDFRVHCSPLPEPVFVDRSMWEKVVLNLLSNALKFTFDGS--IRVAVGVEEGAAVVT 495 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+G+ E+ + + F +I N++ EG+G+GL L K +V + G+ S + Sbjct: 496 VDDTGIGVAAKEMPRLFERFHRIENARSRSNEGSGIGLALVKELVGLHGGEISATSAEGE 555 Query: 801 GTLIEIIFPLYDTSH-PHDCI 820 GT I P + T+H P D + Sbjct: 556 GTRFTIRLP-FGTAHLPPDAV 575 >gi|42524956|ref|NP_970336.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39577167|emb|CAE80990.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 529 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 123/220 (55%), Gaps = 11/220 (5%) Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHEIRTPL +IIG ++ + PL N + + + R+ + ++ I+ND+LD+ Sbjct: 148 FLANMSHEIRTPLNSIIGITDTLAET---PLDNQQ-ASFVEILQRANHQLMTIINDILDL 203 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706 SK+E+G+M L P +L + E +++ A EK + + + ++ + D ++Q Sbjct: 204 SKVEAGEMELRPLPFNLQRLLDELEAVLGFRAKEKGLKLSLAIDPDVEEYFVGDADRLRQ 263 Query: 707 IALNILSNAIHFTPSGG---QIIIS-TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 + +N+L+N++ FT +G Q+ ++ T H N ++ V DTG+G++ + + +PF Q Sbjct: 264 VLMNLLNNSLKFTNNGEISLQVSVNRTVHKGN--LLFCVTDTGIGISKQKFKDIFQPFTQ 321 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + + GTGLGL + K +V G + S P +GT Sbjct: 322 ADTTTTRKYGGTGLGLSITKNIVQMMNGHIWFESQPGQGT 361 >gi|324006599|gb|EGB75818.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 57-2] Length = 593 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 187/398 (46%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 214 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 273 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 274 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 326 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 327 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 381 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ +++ Q P+ + EY + + + + + ++ LL+ S+ Sbjct: 382 AHEVRNPLTAIRGYVQILHQQTRDPI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 437 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 438 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL 493 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 494 INAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLSLQKKIFDPFF------TTKAS 547 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 548 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 585 >gi|320178807|gb|EFW53770.1| Sensory histidine kinase AtoS [Shigella boydii ATCC 9905] Length = 608 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 92/398 (23%), Positives = 188/398 (47%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 229 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 288 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L+ E + L + + Sbjct: 289 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLKHGTEHVALEISFPGRD 341 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 342 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 396 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q + + EY + + + + + ++ LL+ S+ Sbjct: 397 AHEVRNPLTAIRGYVQILRQQTSDLI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 452 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 453 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL 508 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 509 INAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFF------TTKAS 562 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 563 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 600 >gi|298481294|ref|ZP_06999487.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298272498|gb|EFI14066.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 810 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/253 (30%), Positives = 129/253 (50%), Gaps = 14/253 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +DI+ K+ + KL A+ AE+ KS FLA +SHEIRTPL AI+GFS ++ Sbjct: 565 YDITPLKETEQKLIIARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETD---- 620 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 EY + + L+L +++D+LD+SKIE+G N + V ++E +E I + + Sbjct: 621 SRSERQEYIKIVQENNELLLQLISDILDLSKIEAGTFNFVYTNVDVNETCAEIIKSMSMK 680 Query: 679 ANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 ++ LI F +P + D Q+ N ++NA+ FT G I + S+++ Sbjct: 681 VSKGVELI---FEEPLPECYLYTDKNRFTQVISNFINNALKFTQQGC-ITLGYKQVSHQK 736 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + VRDTG+G+ + + + F ++ Q GTGLGL + K++V G+ + S Sbjct: 737 IKFYVRDTGMGIPEEKQKSIFERFVKLNTFVQ----GTGLGLSICKSIVSQMGGEIGVDS 792 Query: 797 TPAKGTLIEIIFP 809 T G+ P Sbjct: 793 TEGVGSCFWFTHP 805 >gi|293553005|ref|ZP_06673650.1| sensor protein YycG [Enterococcus faecium E1039] gi|291602811|gb|EFF33018.1| sensor protein YycG [Enterococcus faecium E1039] Length = 611 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 93/367 (25%), Positives = 173/367 (47%), Gaps = 39/367 (10%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 ME E +L S+L +DG+ +R G +++ N L E+ + + L+ Sbjct: 256 MEAERNRLDSVLSHMTDGVIATDRRGKVVTINDMAVSLLDIKNEEAIGQSILTLLDIEEE 315 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYSLTMHDIS 562 + L ++L L++ T ST E + LR+ I ++ F S +HD++ Sbjct: 316 ----YTLRKLLEDPNEMVLDRST--STLESDQMILRVDFSMIRRESGFISGLVAVLHDVT 369 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQRFGP 617 E EK + +F++ VSHE+RTPLT++ + E + K++ P Sbjct: 370 E--------------QEKTERERREFVSNVSHELRTPLTSMRSYIEALSEGAWKDEEVAP 415 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 +++ +D + ++ ++NDLL++S++++G L E V+ +E V+ + + Sbjct: 416 ----NFLKVT--LDETDRMIR-MINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRFDM 468 Query: 678 YA--NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 EK IR F + D + Q+ NI++NAI ++P GG I T N Sbjct: 469 MVGNQEKNYKIRREFTQRDLWVEVDTDKIIQVVDNIMNNAIKYSPDGGTITCRLLETHNN 528 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 VIL + D G+G+ +L + + F ++ ++ GTGLGL +++ ++ A+ G + Sbjct: 529 -VILSITDQGLGIPKKDLNRVFERFYRVDKARARAQGGTGLGLAISREVIKAHRGAIWAE 587 Query: 796 STPAKGT 802 S KG+ Sbjct: 588 SKEGKGS 594 >gi|291565905|dbj|BAI88177.1| two-component sensor histidine kinase [Arthrospira platensis NIES-39] Length = 1040 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 65/176 (36%), Positives = 104/176 (59%), Gaps = 6/176 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + + L A + AE + KS+FLA +SHEIRTP+ AI+GF ++++ G + PR Sbjct: 859 ELEHKNQALKEATRHAEAANRAKSEFLANMSHEIRTPMNAILGFCDLLQ----GLVAEPR 914 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +Y I SG +L ++ND+LD+SKIE+GKM LH EP+ L + E + A EK Sbjct: 915 QKQYVKSIGASGKTLLALINDILDLSKIEAGKMELHQEPMDLRVMLEEIYQIFCQKAAEK 974 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 ++ + +++P+ I+ D ++QI LN++ NA+ FT +G + +S SN V Sbjct: 975 KVELIIEINDDLPKAIIFDEVRLRQILLNVVGNALKFTDNGS-VKVSVLTNSNTPV 1029 >gi|213971024|ref|ZP_03399145.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato T1] gi|301385587|ref|ZP_07234005.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato Max13] gi|302058829|ref|ZP_07250370.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato K40] gi|302132142|ref|ZP_07258132.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924260|gb|EEB57834.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato T1] gi|331014872|gb|EGH94928.1| sensory box histidine kinase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 595 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 93/375 (24%), Positives = 165/375 (44%), Gaps = 55/375 (14%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L ++L++ DG+ +I+R+G + N + G+ S + Sbjct: 259 RLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGW-----------------DESRLGQS 301 Query: 513 LTEILSL-DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-------------- 557 L E LS +L + L + G T E L I I YS+T Sbjct: 302 LGEALSRPELDEQLHLVLRGGTLERAPEDLAIDIDGESRLLTYSMTPVSHTKGHILGAVM 361 Query: 558 -MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI-IGFSEVIKNQRF 615 +HD++E + + +S+F+ R SHE+RTP+T + + F + + F Sbjct: 362 VLHDVTEQRAFERV--------------RSEFVLRASHELRTPVTGMHMAFGLLQERLHF 407 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P R + N + ++ ++NDLL+ S+ ++G L P S++ + EA + Sbjct: 408 AP--ESREADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLEEARARY 465 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A E+ I++ +PR+ AD ++++ N+L NA+ TP G I + E Sbjct: 466 EGQAQEQDIVLMLDIQEPMPRLHADQSQLERVLDNLLDNALRHTPPNGLIRLQ-ARRHGE 524 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 I+ V D G G+ + + +PF Q+ + G GLGL L K +V + G+ ++ Sbjct: 525 RAIISVEDNGEGIAYGQQGRIFEPFVQVGRKKG----GAGLGLALCKEIVQLHGGRMGVY 580 Query: 796 STPAKGTLIEIIFPL 810 S P +GT + PL Sbjct: 581 SRPGQGTQFYMALPL 595 >gi|212640657|ref|YP_002317177.1| signal transduction histidine kinase [Anoxybacillus flavithermus WK1] gi|212562137|gb|ACJ35192.1| Signal transduction histidine kinase [Anoxybacillus flavithermus WK1] Length = 604 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 110/382 (28%), Positives = 178/382 (46%), Gaps = 61/382 (15%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E E +L S+L +DG+ +R+G I+ N A + E +L P L Sbjct: 259 EGERRKLESVLTHMTDGVIATDRKGRIILINDAALNILNVSRETVLSAPIVTVL-----G 313 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLL---SLRIIIKKLPFSSCYSLTMHDISEW 564 + Y E L ++ R+TL I ST EE + SL +I K+ + + +HDI+E Sbjct: 314 LDEQYTFETL-IEERETL--ILDFSTDEEMYILRASLSVIQKEKGLVNGLIVVLHDITEH 370 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN---- 620 EK + +F+A VSHE+RTPLT + + E + + G + Sbjct: 371 --------------EKIDRDRREFVANVSHELRTPLTTMRSYLEALAD---GAWRDEEIA 413 Query: 621 PRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESG-----KMNLHFEPV------SLDEAV 668 PR+IE N +R ++ +VNDLL +SK++S K +HF P + Sbjct: 414 PRFIEVTQNETER----MIRLVNDLLQLSKLDSKDYKLKKTRVHFIPYFHKVIDRFELTK 469 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 E +S V+ + +EK I + D + Q+ NI+SNA+ ++P GG I Sbjct: 470 KENVSFVRDFPDEKII------------VYMDEDKITQVFDNIISNALKYSPQGGTITFR 517 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + + + V+D GVG+ +L K + F ++ ++ + GTGLGL +AK +V A+ Sbjct: 518 VKK-KGDYIEVSVKDEGVGIPKSDLSKIFERFYRVDKARSRKLGGTGLGLAIAKEVVVAH 576 Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810 G+ + S KGT I P+ Sbjct: 577 GGRIWAESQERKGTTIYFTLPI 598 >gi|118474424|ref|YP_892424.1| sensor histidine kinase/response regulator [Campylobacter fetus subsp. fetus 82-40] gi|118413650|gb|ABK82070.1| sensor histidine kinase/response regulator [Campylobacter fetus subsp. fetus 82-40] Length = 1016 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 117/222 (52%), Gaps = 12/222 (5%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 ++ K+ A + KS FLA +SHEIRTPL IIGF++++KN + E I Sbjct: 373 ITTQKQAAIDANRSKSAFLANISHEIRTPLNGIIGFTDLLKNSNLK----KQEKELVGVI 428 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 ++S +L I+N++LDISKIES K+ L E S + S A+ L A EK I Sbjct: 429 EQSSENLLRIINNILDISKIESRKVELDNEVFSPIKEFSSAVELYSQKAYEKDIEFICYI 488 Query: 691 ANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDT 744 ++ + L D VKQ+ +N++ NAI FTP GQII+ T E + V+D Sbjct: 489 DPSLNKHLEGDYFKVKQVLINLIGNAIKFTPQNGQIIVDITKLDENEDGKTTIKFSVKDN 548 Query: 745 GVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMV 785 G+G+ LEK F Q + +I G GTGLGL ++ + Sbjct: 549 GIGIDKNMLEKIFDSFIQANKDITKIYG-GTGLGLSISNEYI 589 >gi|89074574|ref|ZP_01161046.1| Hypothetical sensor protein TorS [Photobacterium sp. SKA34] gi|89049678|gb|EAR55237.1| Hypothetical sensor protein TorS [Photobacterium sp. SKA34] Length = 971 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 128/239 (53%), Gaps = 7/239 (2%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A+ AEK + KS FLA +SHEIRTP+ ++G + ++ + + + Y + I+RS Sbjct: 459 ARDEAEKANRAKSSFLATMSHEIRTPMNGVLGTASLLADTQL----TSQQKRYLDVINRS 514 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +LDI+ND+LD SKIE+G +++ S+ V++ ++++ + KRI + + Sbjct: 515 GETLLDILNDILDYSKIEAGHLDIRSSNFSVVRMVTDVSNMLEGRSLAKRIGLECHISPQ 574 Query: 694 IPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVGMTNY 751 + + D ++Q+ +N++ NAI FT +G I H +E++ V+DTG+G+ Sbjct: 575 VEGVWFGDESRIRQVLVNLVGNAIKFTDTGKVSIFVEPHPDMPDELLFSVKDTGIGIDEE 634 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F Q ++ EGTGLGL ++K +V A G+ + S +G+ PL Sbjct: 635 AQSLLFSAFQQAAAGRK-SIEGTGLGLAISKHIVAAMDGEIGLESVVGEGSCFWFALPL 692 >gi|325926364|ref|ZP_08187693.1| multi-sensor hybrid histidine kinase [Xanthomonas perforans 91-118] gi|325543243|gb|EGD14677.1| multi-sensor hybrid histidine kinase [Xanthomonas perforans 91-118] Length = 1084 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/239 (31%), Positives = 121/239 (50%), Gaps = 6/239 (2%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A+ AE + K +FLA +SHE+RTPL AI+G+S ++++ P R + I+RS Sbjct: 689 ARAQAEHANRVKDEFLATLSHELRTPLNAILGWSRLMQSDIADPANMGRGL---VIIERS 745 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF-AN 692 I++DLLD+S I SGK+ L E + V + L+Q A ++I + + Sbjct: 746 ARAQTQIIDDLLDMSAILSGKIRLQAEHFDIAGLVRSVLELMQPTALARKIALELDAPCD 805 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 D ++Q+ N+LSNA+ FTP+GG + ++ +E + L V+DTG+G+ Sbjct: 806 GELWFFGDAGRLQQVLTNLLSNALKFTPAGGTVRVAMD-VEDERLRLCVQDTGIGIAADF 864 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPL 810 L F Q R G GLGL +++ +VD + G S +G L I+ P Sbjct: 865 LPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEGQGALFTIVLPF 923 >gi|16081092|ref|NP_391920.1| two-component sensor histidine kinase YycF [Bacillus subtilis subsp. subtilis str. 168] gi|221312017|ref|ZP_03593864.1| hypothetical protein Bsubs1_21801 [Bacillus subtilis subsp. subtilis str. 168] gi|221316342|ref|ZP_03598147.1| hypothetical protein BsubsN3_21707 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221321255|ref|ZP_03602549.1| hypothetical protein BsubsJ_21660 [Bacillus subtilis subsp. subtilis str. JH642] gi|221325538|ref|ZP_03606832.1| hypothetical protein BsubsS_21816 [Bacillus subtilis subsp. subtilis str. SMY] gi|321313601|ref|YP_004205888.1| two-component sensor histidine kinase YycF [Bacillus subtilis BSn5] gi|23396979|sp|Q45614|YYCG_BACSU RecName: Full=Sensor histidine kinase yycG gi|1064813|dbj|BAA11299.1| yycG [Bacillus subtilis] gi|2636587|emb|CAB16077.1| two-component sensor histidine kinase [YycF] [Bacillus subtilis subsp. subtilis str. 168] gi|291486677|dbj|BAI87752.1| hypothetical protein BSNT_06199 [Bacillus subtilis subsp. natto BEST195] gi|320019875|gb|ADV94861.1| two-component sensor histidine kinase (YycF) [Bacillus subtilis BSn5] Length = 611 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 100/376 (26%), Positives = 170/376 (45%), Gaps = 49/376 (13%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E E +L S++ +DG+ NR G I+ N +L E L P T L Sbjct: 259 EGERRKLASVIAYMTDGVIATNRNGAIILLNSPALELLNVSRETALEMPITSLL-----G 313 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYSLTMHDISE 563 + +Y E DL + + + L ++++L LR+ I ++ ++D++E Sbjct: 314 LQENYTFE----DLVEQQDSMLLEIERDDELTVLRVNFSVIQREHGKIDGLIAVIYDVTE 369 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN--- 620 EK + +F+A VSHE+RTPLT + + E + G N Sbjct: 370 --------------QEKMDQERREFVANVSHELRTPLTTMRSYLEALAE---GAWENKDI 412 Query: 621 -PRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 PR++ N +R ++ +VNDLL +SK +S + E + + +S I ++ Sbjct: 413 APRFLMVTQNETER----MIRLVNDLLQLSKFDSKDYQFNREWIQIVRFMSLIIDRFEMT 468 Query: 679 ANEKRILIRTSFANNIPR----ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 + F N+P + D + Q+ NI+SNA+ ++P GG + S Sbjct: 469 KEQ-----HVEFIRNLPDRDLYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEE 523 Query: 735 EEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 EE++ + V+D G+G+ ++EK F ++ ++ + GTGLGL +AK MV A+ G + Sbjct: 524 EELLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIW 583 Query: 794 IFSTPAKGTLIEIIFP 809 S KGT I P Sbjct: 584 ADSIEGKGTTITFTLP 599 >gi|321311783|ref|YP_004204070.1| two-component sensor histidine kinase [Bacillus subtilis BSn5] gi|320018057|gb|ADV93043.1| two-component sensor histidine kinase [Bacillus subtilis BSn5] Length = 589 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 97/361 (26%), Positives = 174/361 (48%), Gaps = 32/361 (8%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 QL +IL + +DG+ IN +G IL TN P E L+ + EQN MN Sbjct: 254 QLSNILSSMADGVITINIDGTILVTNP--------PAERFLQ---AWYYEQN----MNIK 298 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 + L + ++ + ST++E+++ + + + L M + + ++ Sbjct: 299 EGDNLPPEAKELFQNAV--STEKEQMIEMTLQ------GRSWVLLMSPLYAESHVRGAVA 350 Query: 573 HAKKIAEKESSHK--SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + + E+ K DF+A VSHE+RTP++ + G+SE I + + + I Y Sbjct: 351 VLRDMTEERRLDKLREDFIANVSHELRTPISMLQGYSEAIVDDIASSEEDRKEIAQIIYD 410 Query: 631 D--RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + R G LV NDLLD++++ESG LH+E ++++E + + I A EK I + Sbjct: 411 ESLRMGRLV----NDLLDLARMESGHTGLHYEKINVNEFLEKIIRKFSGVAKEKNIALHH 466 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + + D ++Q+ N++ NA+ T +GG + IS H+ + + + ++D+G G+ Sbjct: 467 DISLTEEEFMFDEDKMEQVFTNLIDNALRHTSAGGSVSIS-VHSVKDGLKIDIKDSGSGI 525 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L + F + ++ GTGLGL + K +V+A+ G + S KGT Sbjct: 526 PEEDLPFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFTFYI 585 Query: 809 P 809 P Sbjct: 586 P 586 >gi|269968417|ref|ZP_06182433.1| sensor histidine kinase/response regulator [Vibrio alginolyticus 40B] gi|269826965|gb|EEZ81283.1| sensor histidine kinase/response regulator [Vibrio alginolyticus 40B] Length = 573 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 130/242 (53%), Gaps = 7/242 (2%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L+ A++ AE + KS+FLA +SHEIRTPL +++G +++K + I+ + Sbjct: 200 QLAKAREEAELANRSKSEFLAMMSHEIRTPLNSVLGMLDILKQSTL----SEEQIDALSQ 255 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV-QLYANEKRILIRT 688 ++ S L+L I++D+LD+SKIESG+ L+ + ++L + V+ IS Q+ + Sbjct: 256 MECSAELLLAIISDILDLSKIESGRFQLNEQWINLRDTVTFVISQQKQIAKKKNLKFKLN 315 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 N + D + QI N++ NAI FT G++ +S + + E+++ + DTG+G+ Sbjct: 316 CTVTNDKQFWIDSTRLSQILFNLIGNAIKFTDE-GEVKVSVSE-QDAELVISISDTGIGI 373 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + E F Q S R GTGLGL + K +V+ GK + S G+ I Sbjct: 374 SKAKQEHLFTAFHQGDRSITRRFGGTGLGLAITKHLVEMMRGKIAVKSDEHVGSTFTISI 433 Query: 809 PL 810 P+ Sbjct: 434 PV 435 >gi|224540196|ref|ZP_03680735.1| hypothetical protein BACCELL_05109 [Bacteroides cellulosilyticus DSM 14838] gi|224518186|gb|EEF87291.1| hypothetical protein BACCELL_05109 [Bacteroides cellulosilyticus DSM 14838] Length = 1316 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 85/266 (31%), Positives = 141/266 (53%), Gaps = 21/266 (7%) Query: 564 WKQEKNKLSHAK--KIAEKESSHKSD-----FLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 +KQ K +L H K EK+ S + + F +V+HE RTPLT I+ + I+ + Sbjct: 779 YKQRKQRLEHELYLKQIEKDKSEEFNRELQTFFTQVAHEFRTPLTLILNPLDEIQKKIIH 838 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 G E I R+ +L +VNDL+D+ KIE+G L + ++ + E Q Sbjct: 839 VSGVE---EDLLLIRRNAKRLLTLVNDLMDLRKIENGNGELELSSFNFNDFIQEIYYSFQ 895 Query: 677 LYANEKRILIRTSFANNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 + A ++ I ++ S IP ILA D +++++ N+LSNA+ FTP GG +I++ Sbjct: 896 VTARQRDIALQLSLP-EIP-ILATFDKDALEKVFFNLLSNALKFTPEGGTVILAIFLIEG 953 Query: 735 EE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE--GTGLGLPLAKAMVDANMG 790 E+ + + V+DTGVG++N ++ K KPF + Q + G+ G+G+GL +A+A+V+ + G Sbjct: 954 EKPRIHIEVKDTGVGISNEDISKIFKPFA--LSHQDLHGQMGGSGVGLTIARAIVEKHQG 1011 Query: 791 KFYIFSTPAKGTLIEIIFPL-YDTSH 815 + GT I P YD + Sbjct: 1012 TISVRRREPHGTCFSIDLPWRYDKCY 1037 >gi|148978826|ref|ZP_01815179.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3] gi|145962137|gb|EDK27422.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3] Length = 574 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 141/258 (54%), Gaps = 12/258 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ +L A+K AE+ + KS+FLA +SHE+RTPL AIIG + +K+ + P + Sbjct: 190 RERTTELVTARKDAERANKAKSEFLAMMSHELRTPLNAIIGLIDTLKSTQLTPEQQSILL 249 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + S L+L I++D+LD SKIESG +L + ++ + V+ +S + A++K + Sbjct: 250 NMST----SSELLLAIISDVLDFSKIESGCFSLAPQWSNVRDTVTFVLSEQKKAADDKGL 305 Query: 685 LIRTSFANNIPRI---LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + + +++IP D + QI N++ NAI FT G + +S + + I V Sbjct: 306 TL--TISSDIPEGELHYIDPSRLAQILFNLIGNAIKFTEHG-HVHVSIKYQQSSFYI-AV 361 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+++ +L PF Q ++ R GTGLGL + K +V+ G+ + S P KG Sbjct: 362 EDTGIGISSQQLSSLFSPFVQADSTITRRFGGTGLGLAITKRLVELMRGRISVESEPGKG 421 Query: 802 TLIEIIFPLYDTSHPHDC 819 + E+ P+ T ++C Sbjct: 422 SKFEVQLPVL-TRVTNNC 438 >gi|88798394|ref|ZP_01113979.1| putative two-component system sensory histidine kinase. [Reinekea sp. MED297] gi|88778834|gb|EAR10024.1| putative two-component system sensory histidine kinase. [Reinekea sp. MED297] Length = 1090 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 136/255 (53%), Gaps = 14/255 (5%) Query: 565 KQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 +Q+K L AK + + S +KS+FLA +SHE+RTPL +++ S+ + R G Sbjct: 523 EQQKADLEQAKLALQAKADQLSSTSRYKSEFLANMSHELRTPLNSLLLLSQSLMKNREGN 582 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 L + +E I R G +LD++ND+LD+SK+E+GK+ L + V + + V E + + Sbjct: 583 LSESQ-LEDIGIIHRGGRSLLDLINDILDLSKVEAGKLRLEYTDVDVHQLVEEITAQFKP 641 Query: 678 YANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A+EK + A +P R+ D + ++QI N++ NAI FT G + ++ ++ Sbjct: 642 LADEKDLAFNVDVA--MPETFRLHTDRQRLRQILNNLIGNAIKFTAEGS-VTLTIAENTD 698 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 ++ V DTG+G+ + + + F Q+ + + GTGLGL +++ + G ++ Sbjct: 699 GQLAFTVEDTGIGIEQAQHDSVFEAFAQVDGTTSRQHGGTGLGLTISRDLASLLGGSIHL 758 Query: 795 FSTPAKGTLIEIIFP 809 S +G+ ++ P Sbjct: 759 TSEADEGSRFSLVLP 773 >gi|124268043|ref|YP_001022047.1| signal transduction histidine kinase-like protein [Methylibium petroleiphilum PM1] gi|124260818|gb|ABM95812.1| signal transduction histidine kinase-like protein [Methylibium petroleiphilum PM1] Length = 1001 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/254 (31%), Positives = 128/254 (50%), Gaps = 24/254 (9%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S KS F+A +SHEIRTP+ ++G +E++ G + R +A + RSG +L+I+ Sbjct: 336 SQAKSQFMATMSHEIRTPMNGVLGMTELL----LGTALDSRQRRFAQAVYRSGESLLEII 391 Query: 642 NDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ND+LD SKIE+GK+ L F P +L V + + L+ A E+ + + +P L Sbjct: 392 NDILDFSKIEAGKLELAPADFTPRAL---VEDVLELLAPRAQERGLELSFREEPGLPPAL 448 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVI---------LRVRDTG 745 D ++Q+ N+++NAI FT G ++++ T+ E + L VRDTG Sbjct: 449 HGDALRLRQVLTNLVANAIKFTEHG-EVVVEMRRVEPTAAETALATGDRLWVELCVRDTG 507 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ L + F Q + R GTGLGL +++ +V+ G + S P G+ Sbjct: 508 IGIPPEALSRLFIAFSQASSGMARRYGGTGLGLAISRQLVELMSGSITVRSQPGVGSRFC 567 Query: 806 IIFPLYDTSHPHDC 819 + PL S D Sbjct: 568 VRLPLSPASSDVDV 581 >gi|60681652|ref|YP_211796.1| putative two-component regulatory system histidine kinase [Bacteroides fragilis NCTC 9343] gi|60493086|emb|CAH07867.1| putative two-component regulatory system histidine kinase [Bacteroides fragilis NCTC 9343] Length = 511 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/256 (32%), Positives = 128/256 (50%), Gaps = 14/256 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H I E K ++KL A+ A++ KS FLA +SHEIRTPL AI+GFS +I L Sbjct: 261 HSIQEHKNTEDKLRAARNKAQESDRLKSAFLANMSHEIRTPLNAIVGFSNLIAGG-IVDL 319 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 +Y+ I ++ N +L +V+D+LD+S IES M F L ++E + Q Y Sbjct: 320 DTEEARDYSALISKNCNYLLTLVSDVLDLSCIESDTMTFKFTVYPLTRLLTE---IYQKY 376 Query: 679 ANEKRILIRTSFANNIP----RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 N RI F +P I D ++Q+ ++L NA FT G I Sbjct: 377 EN--RIPQEVQFNLLLPTDNVEIETDAVRLRQVIEHLLDNAAKFTVKGHIDIGYALSDHG 434 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E++ + V DTG G+ + + +K + F +I + Q G GLGL + K +V+ G + Sbjct: 435 EKIYVFVADTGCGIPSDQYKKVFERFYKINSFVQ----GAGLGLSVCKTIVEGLGGTINV 490 Query: 795 FSTPAKGTLIEIIFPL 810 +S +G+ +I PL Sbjct: 491 YSQLKEGSRFSVILPL 506 >gi|332519219|ref|ZP_08395686.1| ATP-binding region ATPase domain protein [Lacinutrix algicola 5H-3-7-4] gi|332045067|gb|EGI81260.1| ATP-binding region ATPase domain protein [Lacinutrix algicola 5H-3-7-4] Length = 507 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 122/230 (53%), Gaps = 11/230 (4%) Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 + EKE+ K+ F+A SHE+R PLT I+ FS+++ + +P+ +Y ++ S + Sbjct: 129 LKEKEA-FKNTFIANFSHELRDPLTGILTFSDILSKTQL----DPQQKDYIQILNSSSSF 183 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 + +++D+LDISKIE+GK+ L +P +L E + E + A +K I F N+P Sbjct: 184 LKQMIDDILDISKIEAGKLELTIDPFNLKELLEEIKLNYIIKAQQKSIDFNYKFDENLPE 243 Query: 697 IL-ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYE 752 I+ D + ++Q+ N+L NAI FT +G + ++ + ++DTG+G+ Sbjct: 244 IVGGDSKRLRQVITNLLDNAIKFTHTGSVTLAVSLNQIRAQKASIHFEIKDTGIGIKEEH 303 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 F Q+ + + GTGLGL + K +V+ + K + S KG+ Sbjct: 304 FNDIFSSFTQVNENDNYK--GTGLGLAIVKHLVELSNSKINVESKLGKGS 351 >gi|290770266|gb|ADD62021.1| putative protein [uncultured organism] Length = 726 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 133/250 (53%), Gaps = 12/250 (4%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 K +L A + ++ + K+DFL R+SH+IRTP+ I G ++ RF + E Sbjct: 335 KRQLLQAAEQEKRANIAKTDFLRRMSHDIRTPINGIRGMVDIC---RFNLGNREKEEECL 391 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI--- 684 + I + +LD+VND+LD++K+ESG++ + EP L + ++E S+++ A+E+ I Sbjct: 392 DKIMSASGFLLDLVNDVLDMNKLESGEIAIKEEPFELTKIINEVSSVIETQADEQCIDYS 451 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV--- 741 + R S + ++ ++QI NILSNAI + G + S + + ++ ++V Sbjct: 452 VDRGSIEYD--NLIGSSLHLRQILQNILSNAIKYNVQNGSVRFSYSENAADDDTVKVTFI 509 Query: 742 -RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 DTG+GM+ + A +PF Q ++ + +GTGLGL + K ++ G+ S Sbjct: 510 CEDTGIGMSEEFQQIAFEPFAQESSNARTAYKGTGLGLAITKRFIEIMGGEIEFISRQNV 569 Query: 801 GTLIEIIFPL 810 GT II P Sbjct: 570 GTEFTIILPF 579 >gi|296133627|ref|YP_003640874.1| multi-sensor signal transduction histidine kinase [Thermincola sp. JR] gi|296032205|gb|ADG82973.1| multi-sensor signal transduction histidine kinase [Thermincola potens JR] Length = 587 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 93/363 (25%), Positives = 180/363 (49%), Gaps = 34/363 (9%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 ++ +IL + +G+ ++++ IL N A K+F + ++ TV + N+ Sbjct: 251 KIQAILTSMVEGVIAVDKDTRILLVNPAFEKIFNVVADQVI--GLTVI-----EGIRNY- 302 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 LEKI L + K+ + ++ I I +P + + + + ++ ++ Sbjct: 303 -----------ELEKILLKALKKGRTINQEIEI--VPLRRAFRVNVVPLMRKEKIVGVVA 349 Query: 573 HAKKIAEKESSHK--SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP----RYIEY 626 + I E K S+F+A VSHE+RTPLT+I GF E + + G + + R++E Sbjct: 350 VFRDITEIRELEKMRSEFVANVSHELRTPLTSIKGFVETLLD---GAMEDREVARRFLEI 406 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 N N + ++ND+L +S IE+ + PV+ +E V + + ++ A EK I + Sbjct: 407 INV---ETNRLSRLINDILSLSSIEAKNKEISRSPVNFNEIVEKVLPILVPMAEEKNITV 463 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T ++P I+A+ +KQ+ +N++ NAI +TP G++++S T S + + V+DTG+ Sbjct: 464 ETDIHPDLPVIMANEDLIKQVLINLVDNAIKYTPENGRVVLSAT-PSGGGLKVSVKDTGI 522 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ + + + F ++ ++ GTGLGL + K ++A+ G + S G+ Sbjct: 523 GIPPESMSRLFERFYRVDKARSRELGGTGLGLAIVKHALEAHGGTIKVESQVGMGSKFTF 582 Query: 807 IFP 809 P Sbjct: 583 YLP 585 >gi|262274965|ref|ZP_06052776.1| chitin catabolic cascade sensor histidine kinase ChiS [Grimontia hollisae CIP 101886] gi|262221528|gb|EEY72842.1| chitin catabolic cascade sensor histidine kinase ChiS [Grimontia hollisae CIP 101886] Length = 1125 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/252 (31%), Positives = 125/252 (49%), Gaps = 10/252 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +I KQ+ +L A ++ K DFLA SHE+RTPL ++G +E + GPL Sbjct: 437 QNIQLIKQKNEELQQADRM-------KDDFLATTSHELRTPLHGMVGIAESMLAGAEGPL 489 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 R I SG + ++V+DLLD K+ G + + + V AV I L Sbjct: 490 PE-RQKHQLRMIINSGERLSNLVDDLLDYHKMRYGDVEISPQAVDTANAVRLVIELSSRL 548 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K + I ++P + AD + ++Q+ N++ NAI +T G+IIIS T ++ Sbjct: 549 LGGKPVRIINQVPIDLPLVRADGQRLEQVLYNLIGNAIKYTDE-GKIIISATVLQG-QLR 606 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 ++V DTG G+ + +LE +P Q S +G GLGL +++ ++D G+ Y+ S P Sbjct: 607 IQVVDTGQGIPSDQLEYIFEPLTQARESNTQYRQGAGLGLSISRQLIDIMGGQLYVSSQP 666 Query: 799 AKGTLIEIIFPL 810 GT PL Sbjct: 667 MVGTTFSFTLPL 678 >gi|237654220|ref|YP_002890534.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] gi|237625467|gb|ACR02157.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] Length = 1023 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/262 (31%), Positives = 134/262 (51%), Gaps = 10/262 (3%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y + DIS + + +L A A ++ KS+FLA +SHEIRTP+ A++G ++V++ + Sbjct: 450 YLGIVEDISARIEMEERLREASAAAAAANAAKSEFLAHMSHEIRTPMNAVLGLAQVLERE 509 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 PL P + I +G +L I++D+LD+SKIE+G++ + P L ++ S Sbjct: 510 ---PL-APAQRDMVGRIRGAGASLLAILDDVLDLSKIEAGQLRIEPRPFDLRALLANLDS 565 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 L+ A K + +R P ++ D ++QI +N++SNAI FT G++ + Sbjct: 566 LMGQAARAKGLALRIEPPALPPGQLRGDGLRIEQILINLVSNAIKFTER-GEVSLRVRAD 624 Query: 733 SNEEVILR----VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 +V LR VRDTG+G+ + PF Q R GTGLGL + K +V+ Sbjct: 625 EVGDVRLRLRAEVRDTGIGIAPEAQARLFAPFTQADAGIARRFGGTGLGLSICKRLVELM 684 Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810 G + S P G+ PL Sbjct: 685 GGAIGVHSQPGLGSTFWFELPL 706 >gi|83593741|ref|YP_427493.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodospirillum rubrum ATCC 11170] gi|83576655|gb|ABC23206.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodospirillum rubrum ATCC 11170] Length = 1301 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 114/228 (50%), Gaps = 11/228 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K+ F A VSHE+RTPLT I+G + +++ P P + + R+ L+L VNDL Sbjct: 215 KTQFFANVSHELRTPLTLILG---PVTSRQEDPTLAPAEKRVLDMVARNARLLLRHVNDL 271 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL---ADL 701 LDI+K+E+G+M + + + A+S A E+ I +F P +L D Sbjct: 272 LDIAKLEAGQMRMQYVRTDVTRLCRFALSHFDSLAEERAI----AFTLEAPAVLWAEIDP 327 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 +++ LN+LSNA FTP+ G+I +S ++VILRV D G G+ + F Sbjct: 328 EKFRRVLLNLLSNAFKFTPNQGEITVSLID-RGDDVILRVSDNGPGIPESMWTAVFERFR 386 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q+ R GTGLGL + + VD + G+ I G ++ P Sbjct: 387 QVDGGSDRRHGGTGLGLAIVREFVDLHGGEVSIGQASEGGAAFTVVLP 434 >gi|299146108|ref|ZP_07039176.1| two-component sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298516599|gb|EFI40480.1| two-component sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 660 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/247 (33%), Positives = 129/247 (52%), Gaps = 28/247 (11%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL-GNPRYIEYAN 628 +L AK+ AE+ + KS F++ +SHEIRTPL AI+GFS +I G + N EYA+ Sbjct: 419 ELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLI----IGSVEQNNELKEYAD 474 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL--- 685 + + NL+L +++D+LDIS++ESGK+ ++E L I+L N + + Sbjct: 475 IVQTNSNLLLQLISDVLDISRLESGKLQFNYEWCELVNHCQNMITL----TNRNKTMDVD 530 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL-RVRDT 744 I+ + D ++QI +N+L+NA+ FTP+GG I + ++ +L V DT Sbjct: 531 IKLQMPKEPYMLYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVDEKKQCMLFSVTDT 590 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK---------AMVDANM--GKFY 793 G G+ + E + F ++ Q GTGLGL + K +D N G + Sbjct: 591 GTGIPEDKQELVFQRFEKLNEFVQ----GTGLGLAICKLTIQYMGGDIWIDKNYKNGARF 646 Query: 794 IFSTPAK 800 IFS P K Sbjct: 647 IFSHPIK 653 >gi|226946335|ref|YP_002801408.1| periplasmic sensory histidine protein kinase [Azotobacter vinelandii DJ] gi|226721262|gb|ACO80433.1| periplasmic sensory histidine protein kinase [Azotobacter vinelandii DJ] Length = 830 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 130/256 (50%), Gaps = 14/256 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ-----R 614 DIS K + L A A+ S KS FL+ +SHE+RTPL A+ GF+++I+ + Sbjct: 556 DISRLKAVEGDLRRATLEAQDASRAKSRFLSSMSHELRTPLNAVQGFAQLIELEVEGKPD 615 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 GP+G EYA I ++ + +V+D+LD+S +E + LH PV + ++ L Sbjct: 616 SGPIG-----EYAREIVKASRHLTALVDDILDLSTLEGRRQQLHIRPVEVGAMLAGCAEL 670 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 VQ + E+++ ++ + AD R ++QI LN+LSNAI + G+I + + Sbjct: 671 VQPHIRERQLQLQLIPMCRPLYVQADSRRLQQILLNLLSNAIKYNCPQGRITLG-YEVRS 729 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPN-SQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + V + V+DTG G+ + + +PF ++ S I G+G+GL L + G Sbjct: 730 DCVRIWVKDTGPGLDAEQQSQLFQPFQRLGRESSNI--PGSGIGLVLCHELASMMNGSMG 787 Query: 794 IFSTPAKGTLIEIIFP 809 +S P G I P Sbjct: 788 FYSEPGHGCRFWIDLP 803 >gi|223983039|ref|ZP_03633243.1| hypothetical protein HOLDEFILI_00522 [Holdemania filiformis DSM 12042] gi|223964989|gb|EEF69297.1| hypothetical protein HOLDEFILI_00522 [Holdemania filiformis DSM 12042] Length = 1500 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/263 (31%), Positives = 136/263 (51%), Gaps = 19/263 (7%) Query: 556 LTMHDISEW----KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 L D++E ++ K L +A AE+ + KSDFL+ +SH+IRTP+ AI+G + + Sbjct: 1081 LVRADVTEMLAAERRTKKTLENALIQAEEANRAKSDFLSAMSHDIRTPMNAIMGMTALAT 1140 Query: 612 NQRFGPLGNP-RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 LG+ R + I S +L ++ND+LD+SKIE ++ L+ + + E + + Sbjct: 1141 AH----LGDSQRVADCLKKITYSSKHLLSLINDVLDMSKIERSQITLNRVRLRMPEVIEQ 1196 Query: 671 AISLVQLYANEKRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQI--I 726 +++ A K I + S AN I + D + QI +NILSNA+ FTP GG I I Sbjct: 1197 LAAIMGPQARIKAIQLNIS-ANQIEHTVFYGDALRINQILINILSNAVKFTPEGGTIDFI 1255 Query: 727 ISTTHTSNEEVI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + S++ + +RDTG+G+ LE PF + QI EGTGLGL + + Sbjct: 1256 VEEIPGSDQNQVRYRFTIRDTGIGIEPQFLEHLFDPFARSSQVGQI--EGTGLGLSITRG 1313 Query: 784 MVDANMGKFYIFSTPAKGTLIEI 806 +++ G + S +G+ I Sbjct: 1314 LIELMNGSLQVESQVGQGSTFVI 1336 >gi|156743019|ref|YP_001433148.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156234347|gb|ABU59130.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 616 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 99/397 (24%), Positives = 172/397 (43%), Gaps = 54/397 (13%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 R +EI + +L++ SDG+ ++ +G I+ NRA + G P I+ K + Q Sbjct: 229 RLLEIRPIARDMVLQSMSDGVIAVDEQGRIIEVNRAAQTMIGLPASQIIGKHAREVIVQ- 287 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 P V+ Y D+ + E+I + E + +++I P + W Sbjct: 288 WPEVVARYR------DMVEVAEEIEVKVGAERRWFNVQIS----PIYDARRAYRGRLFVW 337 Query: 565 K--------------------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 + + + L+ A + AE+ + KS FLA +SHEIRTPLTAI+ Sbjct: 338 RDVTGERLIREELRRNNERLLEAQQALTSALRAAEEGNRVKSVFLAHMSHEIRTPLTAIM 397 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL---------VLDIVNDLLDISKIESGKM 655 G+ ++++ IE N +L +L + N++L+++ IE+G+ Sbjct: 398 GYCQLLEAG----------IERQNLAQTRADLEAIRVASGHLLSLANNVLEMAWIEAGRS 447 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 +H + + V + I+ VQ R +R A + + D V+QI LN++SNA Sbjct: 448 EVHDIAFEVMDVVLDVIATVQPLIRRNRNHLRVEGAEHAGVVQGDPAKVRQILLNLVSNA 507 Query: 716 IHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 FT +GG++ + H + + +V DTG G+ +E+ PF Sbjct: 508 AKFT-TGGEVAVRVAHIGDALQPRIQFQVSDTGSGIAPDRIERLFMPFAIAEEHVGRDQR 566 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 G GLGL +++ G I S +GT + P Sbjct: 567 GVGLGLAISRYYCRLMGGDLSIESALGRGTTVTFWIP 603 >gi|114797839|ref|YP_759129.1| putative tyrosine kinase DivL [Hyphomonas neptunium ATCC 15444] gi|114738013|gb|ABI76138.1| putative tyrosine kinase DivL [Hyphomonas neptunium ATCC 15444] Length = 815 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/357 (23%), Positives = 172/357 (48%), Gaps = 11/357 (3%) Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYL 513 S L+ + +A+ +G + NRA +++ P + + +P + + P + + Sbjct: 445 SSTLDNLHEAVAVFGSDGRLRLHNRAFERVWDIPADRLKDRPDYADVISGCVPLFHDMDI 504 Query: 514 TEILSLDLRQ-TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 + + + + T + T G + L + LP + + D++ ++ ++ L Sbjct: 505 WDAIKVHITDPTARQSTTGEMRRSDGSLLTYLTHPLPDGNTM-IAFADVTATRRVESALR 563 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 + E K++F+ VS+++R+PLT I G++E+++ QR GPL R ++ I Sbjct: 564 DRAEAFEAADRLKTEFVRNVSYQLRSPLTTIFGYAELLETQRNGPL-TERQTDHVRAILS 622 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 + + + ++ ++LD++ IE+G+++L + L+E + +++ LV A + + +R Sbjct: 623 ASDHLNKLIENILDLALIEAGRLDLELSELDLEEVIHQSVELVVSKAEDTEVSVRADITG 682 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 + ++ D R +KQ+ N++SN++ FT GG+I++S + + L VRD G G+ E Sbjct: 683 RLGQMRGDERRIKQVLFNLISNSLRFTEPGGEIVVSAQRM-GDMITLSVRDNGSGL---E 738 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +K F + Q G GLGL L K + + G + S G + P Sbjct: 739 ADKRATSFDSFVSGDQ---RGAGLGLALVKHFIHLHGGTVGMKSVDGGGLEVTCWLP 792 >gi|301168053|emb|CBW27639.1| putative histidine kinase/response regulator fusion protein [Bacteriovorax marinus SJ] Length = 593 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 123/237 (51%), Gaps = 8/237 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 KL AK AE ++ KS+FLA +SHEIRTPL IIGF+ ++ + + E Y Sbjct: 205 KLVEAKIKAESVANLKSNFLANMSHEIRTPLNGIIGFTGILSDLKLSTEAK----EQVRY 260 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I G + I+ND+LD SKI +GK+++ ++ V I + + I ++ Sbjct: 261 IKECGESLAAIINDILDFSKISAGKLSIVKSNFNIRNCVLSTIHIFDHITTSRGIDLKID 320 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILRVRDTG 745 ++IP IL+ D +KQ+ N++ NA+ FT G ++ + S+ ++ +V+DTG Sbjct: 321 IESDIPDILSGDSLRLKQVLTNLIGNAVKFTEKGSIEVKVKVVQKSDSYFKLQFKVKDTG 380 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ + F Q S + GTGLGL ++K +V+A G+ + S G+ Sbjct: 381 IGIRQEAQARLFYSFEQADVSTSRKYGGTGLGLSISKKLVEAMGGEISVSSEEGVGS 437 >gi|153869210|ref|ZP_01998873.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152074257|gb|EDN71132.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 1134 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 125/232 (53%), Gaps = 3/232 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E S +KS+FLA +SHE+RTPL +++ ++++ N + G L + + IEYA I +G +L Sbjct: 433 ELASRYKSEFLANMSHELRTPLNSLLILAQLLANNKPGNLTD-KQIEYAKTIHSAGADLL 491 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRI 697 ++ND+LD+SK+E+G++ +H +SL + + A ++ + + + A ++ + Sbjct: 492 TLINDILDLSKVEAGQVEIHANDISLTNLLETIEQKFRPIAEQQELNFQITIAEESLTTL 551 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D + +KQI N+LSNA FT G I + + + + V DTG+G+ + Sbjct: 552 YTDGQRLKQILNNLLSNAFKFTQQGN-IKLIVQKSEADFISFSVSDTGIGIPQEKQNIIF 610 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q+ S Q R GTGLGL +++ G+ + S KG+ P Sbjct: 611 EAFQQVDGSNQRRYGGTGLGLSISRQFARLLGGEITLHSEEGKGSTFTFSLP 662 >gi|85860923|ref|YP_463125.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] gi|85724014|gb|ABC78957.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB] Length = 683 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 121/232 (52%), Gaps = 18/232 (7%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KSDFLA +SHEIRTP+ AI+G +E++ PL +P Y +G +L+I+ND+ Sbjct: 153 KSDFLASMSHEIRTPMHAILGMAELLLET---PL-SPEQQRYVEIFRNAGENLLNIINDI 208 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703 LDISK+E+G + L L E + + + + A+ K + + ++P ++ D Sbjct: 209 LDISKVEAGHLELENIEFDLGEIIERTVEALAIRAHGKGLELACHILPDVPVNLIGDPVR 268 Query: 704 VKQIALNILSNAIHFTPSGGQII-------------ISTTHTSNEEVILRVRDTGVGMTN 750 ++QI +N++ NAI FT G ++ T E++ + DTG+G+ Sbjct: 269 LQQILINLVGNAIKFTEKGEVVVHVEKSTELTGGPETGTEEGGKVELLFSIADTGIGIPQ 328 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +++K + F Q +S + GTGLGL +++ +V+ G + S KGT Sbjct: 329 EKIDKMFEKFTQADSSTTRKHGGTGLGLSISRRLVEMMGGHIRLDSEVGKGT 380 >gi|29347071|ref|NP_810574.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29338969|gb|AAO76768.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 601 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 134/257 (52%), Gaps = 23/257 (8%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI++ K+ + L AK+ AE+ KS FLA +SHEIRTPL AI+GFS +++ Sbjct: 361 DITQLKETEQMLIKAKEKAEEADRLKSAFLANMSHEIRTPLNAIVGFSSMLEEAE----D 416 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +Y I+ + L+L +++D+LD+SKIE+G ++ E V+ + ++ +Q+ Sbjct: 417 QEEKHQYITIIEDNNKLLLQLISDILDLSKIEAGTFDIIPERVNAKQLCNDLFQAMQMKT 476 Query: 680 NEKRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 + + + +N+P + +D + Q+ LN ++NA+ FT S G I I N EV Sbjct: 477 SPQ---VELRLKDNLPELTFTSDKNRLYQVLLNFVTNALKFT-SEGNITIDYQIDGN-EV 531 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQ----IPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 V+DTG+G+ + E F + IP GTGLGLP+ +++V GK Sbjct: 532 KFSVQDTGMGIEPEKQEAIFTRFVKLNSFIP--------GTGLGLPICQSIVTQLGGKIG 583 Query: 794 IFSTPAKGTLIEIIFPL 810 + S P +G P+ Sbjct: 584 VESEPGRGACFWFTHPI 600 >gi|323704003|ref|ZP_08115626.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] gi|323531032|gb|EGB20948.1| integral membrane sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] Length = 498 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/253 (29%), Positives = 136/253 (53%), Gaps = 9/253 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP-RY 623 K+ +K++ ++I E + DF+A VSHE+RTPLT I G++E + ++ + P + Sbjct: 249 KELNDKINLLRQIDET----RRDFVASVSHELRTPLTIIQGYTEALLDE---VVETPEKK 301 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 EY + I + +VNDLLD+ +IE+G++ L+ + V L + S + ++ EK+ Sbjct: 302 EEYLHSILEETLRLRRLVNDLLDLRQIETGQVKLNKQAVDLADLFSAVLQKMEGLFREKQ 361 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + ++ + D + Q+ +N++ NA+ TP GG+I++ S+ E+ ++V D Sbjct: 362 VDLKLALPEKPVVAEVDPDRIGQVLINLVDNALRATPGGGRILVKLM-VSDNEITVKVTD 420 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G G+ E + F +I S+ G GTGLGL + K +V+ + G+ + S P +GT Sbjct: 421 SGPGIPKEEQKLIWHKFYKIDKSRSRSGGGTGLGLAIVKQLVEIHGGRITLDSQPGQGTT 480 Query: 804 IEIIFPLYDTSHP 816 P+ + P Sbjct: 481 FSFTLPMQPGAAP 493 >gi|157369528|ref|YP_001477517.1| Hpt sensor hybrid histidine kinase [Serratia proteamaculans 568] gi|157321292|gb|ABV40389.1| Hpt sensor hybrid histidine kinase [Serratia proteamaculans 568] Length = 1070 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 133/250 (53%), Gaps = 11/250 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+E+ + A++ AE E+ KS FLA VSHE+RTP+ AI+G E+ ++ P G P + Sbjct: 557 KREREVIEQARQHAEAENRMKSKFLATVSHELRTPMHAILGLLELELKRQPTPEGLP--V 614 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 Y++ L + +++E+G + L V+L ++ +L Q E+ + Sbjct: 615 IYSSASSLLNLLNDLQDH-----ARLETGSLTLVARSVALQPWIAHINALYQPLIGERPV 669 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS---NEEVILR 740 + S A+N+P +L D + Q+A N+++NAI FTP G + H E+ L Sbjct: 670 TLNVSAADNLPAAVLIDGERLLQVANNLINNAIKFTPHGTIQVNIGWHEQVPPQGELWLT 729 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D+G G+ E++K +PF + +Q++ +GTGLGL + K +++ G+ + S P Sbjct: 730 VADSGCGIAADEIDKLFQPFYRARGAQRVSVQGTGLGLSICKEIIEQMGGRIALQSQPGL 789 Query: 801 GTLIEIIFPL 810 GT + + P+ Sbjct: 790 GTQVTLSVPV 799 >gi|298376092|ref|ZP_06986048.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19] gi|298267129|gb|EFI08786.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19] Length = 638 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/244 (34%), Positives = 127/244 (52%), Gaps = 8/244 (3%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 EK L+ A + A + KS FLA +SHEIRTPL AIIGFS +I L +Y Sbjct: 403 EKESLAEALEKANESDRMKSVFLANMSHEIRTPLNAIIGFSSLIAEL---DLTAEEKEQY 459 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 AN I + L+L +VND+LD+++IESG + H E +L + V + + L + I Sbjct: 460 ANIITTNNELLLKLVNDILDLARIESGGIVFHKESCNLTDLV-KTLYKQHLSDVPEGIEF 518 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 + + + +D + Q NIL NAI FT +G I ++V L V+DTG+ Sbjct: 519 KEKCPDTPICLYSDKERLYQALENILKNAIKFTSAGFIEIGYEYPADAQDVRLYVQDTGI 578 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G++ + E + F ++ + Q GTGLGL + +A+V G+ + S KG I + Sbjct: 579 GISPEDQEAIFERFKKLDDFVQ----GTGLGLSICQAIVKQLNGRILLKSEKNKGCRISL 634 Query: 807 IFPL 810 +F L Sbjct: 635 VFEL 638 >gi|315922858|ref|ZP_07919098.1| LOW QUALITY PROTEIN: two-component sensor histidine kinase [Bacteroides sp. D2] gi|313696733|gb|EFS33568.1| LOW QUALITY PROTEIN: two-component sensor histidine kinase [Bacteroides sp. D2] Length = 505 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/247 (33%), Positives = 129/247 (52%), Gaps = 28/247 (11%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL-GNPRYIEYAN 628 +L AK+ AE+ + KS F++ +SHEIRTPL AI+GFS +I G + N EYA+ Sbjct: 264 ELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLI----IGSVEQNNELKEYAD 319 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL--- 685 + + NL+L +++D+LDIS++ESGK+ ++E L I+L N + + Sbjct: 320 IVQTNSNLLLQLISDVLDISRLESGKLQFNYEWCELVNHCQNMITL----TNRNKTMDVD 375 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL-RVRDT 744 I+ + D ++QI +N+L+NA+ FTP+GG I + ++ +L V DT Sbjct: 376 IKLQMPKEPYMLYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVDEKKQCMLFSVTDT 435 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK---------AMVDANM--GKFY 793 G G+ + E + F ++ Q GTGLGL + K +D N G + Sbjct: 436 GTGIPEDKQELVFQRFEKLNEFVQ----GTGLGLAICKLTIQYMGGDIWIDKNYKNGARF 491 Query: 794 IFSTPAK 800 IFS P K Sbjct: 492 IFSHPIK 498 >gi|322419044|ref|YP_004198267.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320125431|gb|ADW12991.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 583 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 96/351 (27%), Positives = 173/351 (49%), Gaps = 48/351 (13%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP--VE-----DILRKPFTVFLEQNT 505 +L +IL +GI + + +G I N A LFG VE DI R P Sbjct: 248 RLDTILRGMGEGIMVADPQGTITLVNPAFKGLFGLQDDVEGRQLIDISRHP--------- 298 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL-----TMHD 560 ++ +I+S ++ +E++ L S KE +L I +P L HD Sbjct: 299 --ALHESFRDIISTR-QERIEELQLHSPKERSVL-----IHWVPLLEGVVLNGVVAVFHD 350 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 IS+ +Q +KI + DF+A VSHE+RTP+T I G++E + G L N Sbjct: 351 ISDIRQ-------LEKI-------RRDFVANVSHELRTPVTIIKGYAETLIA---GALEN 393 Query: 621 P-RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P + ++ + + + +++DLL +S++ESG + L V++ + ++L++ Sbjct: 394 PSQAAKFVKIMYSHADRLAVLISDLLTLSQLESGTIALETRSVAVYDIAEHVVALLEQKI 453 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 E+ I + S +LAD ++Q+ +N++ NA+ +TP+GG + + T + V++ Sbjct: 454 RERSIGVDISGLKGAANVLADPVRLEQVIVNLVDNAVKYTPAGGSVTL-TAAEDDGRVVI 512 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 VRDTG+G+ +L + + F ++ ++ GTGLGL + K ++ + G Sbjct: 513 AVRDTGIGIPPKDLPRIFERFYRVDTARSRDEGGTGLGLSIVKHILQLHGG 563 >gi|256423935|ref|YP_003124588.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] gi|256038843|gb|ACU62387.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] Length = 1016 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 86/259 (33%), Positives = 138/259 (53%), Gaps = 18/259 (6%) Query: 557 TMHDISEWKQ-------EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 T DIS K+ +K+ L+ AK+ AE+ + KS+FLA +SHEIRTPL +IGF+E+ Sbjct: 344 TFQDISATKEAEHQLILQKSNLAAAKQQAEQANMAKSEFLANMSHEIRTPLNGVIGFTEL 403 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + N +Y + +++S N +L I+ND+LD SKIESGK+ L + L E S Sbjct: 404 VLKTDL----NETQHQYLSIVNQSANALLSIINDILDFSKIESGKLELDIDKYDLYEFSS 459 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIIS 728 + +V A K + + + + +PR D +KQI +N+L NA+ FT S G+I + Sbjct: 460 QVSDIVSYQAQHKGLEMLLNVSTQLPRFAWFDEVRLKQILINLLGNAVKFT-SNGEIELK 518 Query: 729 T-----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 ++ VRDTG+G+ + K + F Q S + GTGLGL ++ Sbjct: 519 VHPLEFLEDDKAKIRFEVRDTGIGIKPEKQLKIFEAFRQEDASTTKKYGGTGLGLTISNK 578 Query: 784 MVDANMGKFYIFSTPAKGT 802 ++ + +I S ++G+ Sbjct: 579 LLALMGSELHIESGVSQGS 597 >gi|162457113|ref|YP_001619480.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161167695|emb|CAN99000.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 639 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 129/242 (53%), Gaps = 14/242 (5%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 F +C D+ + K+ + + + AE+ S K +FLA VSHE+RTPLTAI+G++ Sbjct: 236 FGTCT-----DVDDQKRLEQQRAEVLAQAEETSRLKDEFLAIVSHELRTPLTAILGWA-- 288 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + QR P P+ +E I+R+ ++ ++L+ S+I +GK+ L+ S++E V Sbjct: 289 -RMQRSRPELAPKAMEV---IERNAEAQARLIEEILESSRIVTGKIRLYPRNASVNELVR 344 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 A+ V+ A+ K + + + I+ D ++Q+ N+L NA+ FTP GGQ+ + T Sbjct: 345 TAVDAVRPAADAKAVALDVRLDPGVGEIVCDPDRLQQVVTNLLVNAVKFTPGGGQVGLQT 404 Query: 730 T-HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 H EV V DTG G+++ L + F Q + + G GLGL + K +V+ + Sbjct: 405 ALHPGGVEVT--VTDTGKGISSAFLPHVFERFRQAEAATTRQHGGLGLGLAIVKYLVELH 462 Query: 789 MG 790 G Sbjct: 463 GG 464 >gi|148546933|ref|YP_001267035.1| integral membrane sensor hybrid histidine kinase [Pseudomonas putida F1] gi|148510991|gb|ABQ77851.1| integral membrane sensor hybrid histidine kinase [Pseudomonas putida F1] Length = 643 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 130/254 (51%), Gaps = 9/254 (3%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E KQ +L A++ AE+ + KSDFLA +SHE+RTP+ ++G ++++ PL N Sbjct: 242 AEQKQAIAELIQAREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETT---PLSNE 298 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + +Y S +L ++ND+LD S+IE + L +L E ++ ++ Q A + Sbjct: 299 QA-DYTAVASESTGHLLKVINDILDFSRIERAALQLEHIDFNLGELITSSVQSFQHSAQQ 357 Query: 682 KRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI- 738 + + + I ++ D ++QI LN++ NA+ FT G + + ++++I Sbjct: 358 RGLGLHLQLPAGIEQLQVNGDPTRIRQILLNLVGNALKFTERGQVQVDARWQVLDQQLIW 417 Query: 739 --LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 VRDTG+G+ + LE F Q +S R GTGLGL +A+ + + GK S Sbjct: 418 LTCSVRDTGIGIDSDRLEMMFVAFQQADSSISRRYGGTGLGLSIARTLAERMGGKLRGES 477 Query: 797 TPAKGTLIEIIFPL 810 G+ + PL Sbjct: 478 REGLGSTFTLEMPL 491 >gi|134293593|ref|YP_001117329.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis G4] gi|134136750|gb|ABO57864.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis G4] Length = 664 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 97/368 (26%), Positives = 167/368 (45%), Gaps = 20/368 (5%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE------QNTPS 507 L S+++A+ D I ++ I+S NRA ++FG + + T + Q P+ Sbjct: 147 LHSVVDASPDAIVGVDAGRRIVSWNRAARRIFGVDATAAIGRDVTTLIAPRWLRLQPLPA 206 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567 H + D+ + + + I+ + S+T+ + + +++ Sbjct: 207 SFEHPRAAVGPFDV----LCVRGDGGRFRASFAAAPIVDAGGNCTGLSITLREADQRRRD 262 Query: 568 KN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 + L A+ A++ + K + L+ VSHE+RTPL I G+ EV+++ G Sbjct: 263 ERGHLRALRGARVQADQSNRLKDELLSTVSHELRTPLNVIYGWVEVLRSVD----GQAFA 318 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + + IDRS + +V DLLD S + +G+ L PV L V +A+ + A+ Sbjct: 319 QQAIDAIDRSARSLSRMVGDLLDASSLATGRTRLERAPVDLVRIVRDAVRELGGSADANG 378 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 I + T A I AD ++Q+ N+LSNAI FTPSGG+I +S + V + V D Sbjct: 379 IALSTDCALTNCVISADGERLRQVLSNLLSNAIKFTPSGGRITVSLAR-AGARVRMAVTD 437 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK-GT 802 TG G++ L F + + G GLGL + + +V + G S A GT Sbjct: 438 TGHGISAERLPHLFDTFNRPEGAAASPKRGLGLGLSIVRNIVRLHGGDVAASSPGAGLGT 497 Query: 803 LIEIIFPL 810 + + P+ Sbjct: 498 TVTVTLPV 505 >gi|229184210|ref|ZP_04311419.1| hypothetical protein bcere0004_17740 [Bacillus cereus BGSC 6E1] gi|228599325|gb|EEK56936.1| hypothetical protein bcere0004_17740 [Bacillus cereus BGSC 6E1] Length = 444 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/251 (33%), Positives = 124/251 (49%), Gaps = 13/251 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E + + L+H EK K++F+A +SHEIRTPLT I G+SE +K L Sbjct: 205 GELGELAHSLNHMSDKIEKAEQMKNEFIASISHEIRTPLTGIKGWSETLKT--VDHLTEE 262 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + I + ++ +V +LLD S+++S NL+ + V L + + E I + E Sbjct: 263 EIKQGMGIISGETDRLIHLVEELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNVEE 322 Query: 682 KRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K++ F I RI + D +KQI LNI+ NAI ++ G++ I T + VI Sbjct: 323 KKM----QFIKTIERIELIGDRNRLKQIFLNIVQNAIKYSHKNGKVYIEATKNEGQAVI- 377 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 +V+D G+G+ L + F QI N G GLGL + K MV+ + G I S Sbjct: 378 KVKDDGIGIAKEHLPYIEQSFYQINNHTT----GAGLGLAIVKKMVELHGGTINIISKEG 433 Query: 800 KGTLIEIIFPL 810 GT I I PL Sbjct: 434 IGTTILIKLPL 444 >gi|332702027|ref|ZP_08422115.1| multi-sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552176|gb|EGJ49220.1| multi-sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 604 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 92/367 (25%), Positives = 180/367 (49%), Gaps = 35/367 (9%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 +I + ++ QL +IL+ +G+ +++ +G I + NRA++ +F P Sbjct: 244 QIQIETITVQKQQLVAILDNMKEGVMLLSADGRIQAVNRAMTLIF----------PGIEH 293 Query: 501 LEQNTP--SVMNHYLTEIL--SLDLRQTLEKITLG-STKEEKLLSLRIIIKKLPFSSCYS 555 + TP ++M+ L + +L+ R+T ++L + + I+ K S + Sbjct: 294 CQGKTPLEAIMDPVLHQECERALENRETGAPVSLLLEPRSGVFYDVGIVPLKESGSGLGA 353 Query: 556 LTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 + + HDIS +L H +++ + DF+A VSHE+RTPLT+I G++E +++ Sbjct: 354 VVVFHDIS-------RLKHLERV-------RRDFVANVSHELRTPLTSIKGYAETLQSD- 398 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P +P+ + + I ++ N + I+ DLL++S++E+ + PV AV A Sbjct: 399 --PAASPQAKGFLDIIVKNANHMTKILGDLLNLSRLEADRQAFELAPVDAQAAVMSAYRE 456 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 + + + + +LAD + Q+ N++ NA+ ++P G + + T + Sbjct: 457 CESLGRGRGVGLVCRIPEKAVFVLADYDRLVQVFRNLIENALRYSPEHGSVTV-FHQTGD 515 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 EV+ V D G G+ E K + F ++ + G +GLGL +AK +V+ + G+ ++ Sbjct: 516 GEVLFGVSDRGPGIPRDEQAKIFERFYRVEKHRLKMGGSSGLGLAIAKHIVERHGGRIWV 575 Query: 795 FSTPAKG 801 S PA G Sbjct: 576 VS-PATG 581 >gi|315181590|gb|ADT88503.1| Periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii NCTC 11218] Length = 807 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 120/243 (49%), Gaps = 7/243 (2%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK AE + KS F++ +SHEIRTP+ +I+G S ++ I I Sbjct: 458 LKDAKLQAENANMAKSQFISNISHEIRTPMNSILGMSHLLMTSNLSEEQRNHLIT----I 513 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 D+SG +L ++ND+LD+SKI++GK+++ P L V + + + A + + + Sbjct: 514 DKSGKHLLSLINDILDMSKIDAGKVDIEEIPFDLAALVYDVHDIFEYKAKKHGVKLHLDL 573 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTGVG 747 ++P +L D +KQI LN +SNAI FT G I ++E V L V D G+G Sbjct: 574 DKSLPPLLGDPFRIKQIMLNFVSNAIKFTEQGDVTIRVQGAVTSESVFALRLSVEDNGIG 633 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 ++ + K + F Q S + GTGLGL + K + G+ + S G+ + Sbjct: 634 LSADDQMKVFESFQQADASTTRKYGGTGLGLAICKRIAHLMGGEVGVESRLGDGSTFWLT 693 Query: 808 FPL 810 L Sbjct: 694 LDL 696 >gi|257885425|ref|ZP_05665078.1| histidine kinase [Enterococcus faecium 1,231,501] gi|257821281|gb|EEV48411.1| histidine kinase [Enterococcus faecium 1,231,501] Length = 611 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 93/367 (25%), Positives = 173/367 (47%), Gaps = 39/367 (10%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 ME E +L S+L +DG+ +R G +++ N L E+ + + L+ Sbjct: 256 MEAERNRLDSVLSHMTDGVIATDRRGKVITINDMAISLLDIKNEEAIGQSILTLLDIEEE 315 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYSLTMHDIS 562 + L ++L L++ T ST E + LR+ I ++ F S +HD++ Sbjct: 316 ----YTLRKLLEDPNEMVLDRST--STLESDQMILRVDFSMIRRESGFISGLVAVLHDVT 369 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQRFGP 617 E EK + +F++ VSHE+RTPLT++ + E + K++ P Sbjct: 370 E--------------QEKTERERREFVSNVSHELRTPLTSMRSYIEALSEGAWKDEEVAP 415 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 +++ +D + ++ ++NDLL++S++++G L E V+ +E V+ + + Sbjct: 416 ----NFLKVT--LDETDRMIR-MINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRFDM 468 Query: 678 YA--NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 EK IR F + D + Q+ NI++NAI ++P GG I T N Sbjct: 469 MVGNQEKNYKIRREFTQRDLWVEVDTDKIIQVVDNIMNNAIKYSPDGGTITCRLLETHNN 528 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 VIL + D G+G+ +L + + F ++ ++ GTGLGL +++ ++ A+ G + Sbjct: 529 -VILSITDQGLGIPKKDLNRVFERFYRVDKARARAQGGTGLGLAISREVIKAHRGAIWAE 587 Query: 796 STPAKGT 802 S KG+ Sbjct: 588 SKEGKGS 594 >gi|78222974|ref|YP_384721.1| histidine kinase [Geobacter metallireducens GS-15] gi|78194229|gb|ABB31996.1| histidine kinase [Geobacter metallireducens GS-15] Length = 462 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 132/250 (52%), Gaps = 12/250 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +++E K + L AK AE K D LA VSHEIR+ + + G E+++ PL Sbjct: 64 ELAERKNIERDLKRAKVSAEAACHSKEDLLALVSHEIRSQIQMLTGAVELLRET---PL- 119 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + EY N + +G +L +VNDLLD S++++G+++L E + L+ A Sbjct: 120 DKKQTEYLNAFNHAGEFLLSLVNDLLDNSRLDAGRIHLDQIEFPFRELLERTAQLIAWQA 179 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII-----STTHTS 733 K + + + +IP +++ D + ++Q+ LN+ NAI FT G II S+ + Sbjct: 180 GRKGLELEYHLSPDIPAQLVGDPKRLQQVILNLAGNAIKFTEQGKIIITVEPEASSLASQ 239 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++I ++DTG+G+ +LE+ + + Q P + + G GTGLGL +AK +V G Sbjct: 240 EMQLIFTIQDTGIGIPGDKLEEIFERYAQASPATFRTYG-GTGLGLNIAKRLVGLMGGTI 298 Query: 793 YIFSTPAKGT 802 + S KGT Sbjct: 299 RVTSKEGKGT 308 >gi|117926505|ref|YP_867122.1| Hpt sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610261|gb|ABK45716.1| amino acid-binding domain sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1251 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/248 (30%), Positives = 132/248 (53%), Gaps = 14/248 (5%) Query: 564 WKQEKNKLSHAKKIAEKESSHKSD----FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 W ++ ++L+ ++A E+ S+ FLA +SHE+RTPL AIIG S + ++ R + Sbjct: 535 WNRKLSRLTKQLQLASAEARVASETKNLFLANMSHEVRTPLNAIIGMSRLAQDLREEHVR 594 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +Y I + +L I+NDLLD SK+E+GK+ L P +DE ++ +++ A Sbjct: 595 Q----DYLVKIHGASQSLLAIINDLLDFSKLEAGKLALERTPFQIDEVIANINAILGHKA 650 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +K + IR ++P ++ D + Q+ +N++ NA+ FT G I + ++ E Sbjct: 651 VQKELSIRYYVDADVPNHVVGDPLRLGQVLINLMGNAVKFTDQ-GYIALRVEQVAHSEHR 709 Query: 739 LRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 LR+R D+GVG++ + + F Q NS R GTGLGL +++ +V G ++ Sbjct: 710 LRLRFSVKDSGVGISPSAVAGLFQAFTQADNSITRRFGGTGLGLVISRELVKVMGGDIHV 769 Query: 795 FSTPAKGT 802 S G+ Sbjct: 770 ESELGVGS 777 >gi|255723892|ref|XP_002546875.1| hypothetical protein CTRG_01180 [Candida tropicalis MYA-3404] gi|240134766|gb|EER34320.1| hypothetical protein CTRG_01180 [Candida tropicalis MYA-3404] Length = 2503 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/257 (31%), Positives = 123/257 (47%), Gaps = 18/257 (7%) Query: 568 KNKLSH----AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 KNKL AK AE ++ K+ FLA +SHEIRTP +++ FS + + Sbjct: 1972 KNKLLSQMEIAKSAAEDATAEKASFLANMSHEIRTPFNSLLSFSIFLLDTTLTHTQR--- 2028 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 +Y I S + L+I++ +L SKIE G L P SL++ + AI L Sbjct: 2029 -DYVEAIKSSAMITLNIIDGILAFSKIEHGSFTLDNAPFSLNDCIESAIQLGGEVVTTSE 2087 Query: 684 ILIRTSFANNIPRI---LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEE 736 I F NN P I + D+ +QI +N++ NAI FT S G + +S + T + E Sbjct: 2088 I--ELVFFNNCPEIESVVGDVTRFRQIVINLVGNAIKFT-STGYVSVSCSATKIGDNRYE 2144 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + V+DTG+G+ + K F Q+ S + G GLGL ++K + + GK S Sbjct: 2145 LKVSVKDTGIGIPDQSQTKVFGAFSQVDGSSRREFGGAGLGLAISKKLAEIMGGKLRFES 2204 Query: 797 TPAKGTLIEIIFPLYDT 813 KGT + L T Sbjct: 2205 DYGKGTTFYLTVGLRGT 2221 >gi|149190210|ref|ZP_01868485.1| sensor protein LuxQ [Vibrio shilonii AK1] gi|148835957|gb|EDL52919.1| sensor protein LuxQ [Vibrio shilonii AK1] Length = 864 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/257 (30%), Positives = 132/257 (51%), Gaps = 9/257 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI++ + + + A+K AE + ++DFLA++SHEIRTPL I+G S+++K G Sbjct: 457 QDITKLVEAEKQSIKARKEAEWSAKARTDFLAKMSHEIRTPLNGILGISQLLKQG--GDD 514 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 G +Y E + SG +L ++ND+LD SKIE+G L E ++ + + Sbjct: 515 G--KYQEQIEVLCNSGEHLLAVLNDILDFSKIENGSFKLEKHNFKFKEVITAIEGIYKPL 572 Query: 679 ANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG----GQIIISTTHTS 733 + K I L+ + N + D + QI N++SNAI FT G + +T T Sbjct: 573 CDHKNIELVIQNGLNENTALNTDQVRLNQILFNLVSNAIKFTHKGHVKVSFALKTTDSTK 632 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + ++V DTG+G+ + ++++ PF Q + G+GLGL + K +V G+ Sbjct: 633 TNWLTIQVEDTGIGILSNQIQQVFDPFVQSEATLTREYGGSGLGLAIVKNLVTIFDGQIN 692 Query: 794 IFSTPAKGTLIEIIFPL 810 + S +GT E+ P+ Sbjct: 693 VSSEVGRGTRFEVRLPV 709 >gi|91789987|ref|YP_550939.1| periplasmic sensor signal transduction histidine kinase [Polaromonas sp. JS666] gi|91699212|gb|ABE46041.1| periplasmic sensor signal transduction histidine kinase [Polaromonas sp. JS666] Length = 919 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 85/309 (27%), Positives = 154/309 (49%), Gaps = 12/309 (3%) Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDIS-EW 564 + HY +L+ L ++ + S +E+ L + ++ L +S YS + S E Sbjct: 606 LVHYAETLLAGALGGASARVMVASVVQEEPLGIDEVMNILDEASQVRAYSRELELKSQEL 665 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + KL A ++ K DF++ V+HE+RTPLT+I SE++ L + Sbjct: 666 EAATAKLRAANDRLKELDRMKDDFMSTVTHELRTPLTSIRALSEILLETPQASLAERQ-- 723 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 ++ I + + ++N +LD++KIESG H + L E + E+++ N++ + Sbjct: 724 KFLGIIVKEAERLTRLINQVLDMAKIESGNAEWHTSELDLREVIEESVAATYATFNDRHV 783 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFT-PSGGQIIISTTHTSNEEVILR--V 741 + A++ PRI AD + Q+ LN+LSNA+ F P+ GQ+ +S E LR V Sbjct: 784 TLTQDLASHTPRIRADRDRLIQVMLNLLSNAVKFCHPTRGQVHVSLRQ---EPGGLRVDV 840 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RD G G++ + + F Q+ ++ + +GTGLGLP+++ +++ G+ ++ S P G Sbjct: 841 RDNGSGISAANQKIIFERFRQVGDTMTNKPQGTGLGLPISRHIIERFGGRLWVQSEPGNG 900 Query: 802 TLIEIIFPL 810 P Sbjct: 901 ATFSFTLPF 909 >gi|269139680|ref|YP_003296381.1| integral membrane sensor hybrid histidine kinase [Edwardsiella tarda EIB202] gi|267985341|gb|ACY85170.1| integral membrane sensor hybrid histidine kinase [Edwardsiella tarda EIB202] gi|304559549|gb|ADM42213.1| Two-component sensor protein RcsC [Edwardsiella tarda FL6-60] Length = 956 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 130/257 (50%), Gaps = 9/257 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 445 AMVDVSARVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLRTKTL- 503 Query: 617 PLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P ++ + S L+L I+ND+LD SKIES ++ + E + I Sbjct: 504 ----PEEVQRLLGAMSNSSGLLLKIINDILDFSKIESEQLKIEPGRFVPREVIPHIIGNY 559 Query: 676 QLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 KR+ + ++P L+ D+ ++Q+ N+LSNAI FT +G II ++ Sbjct: 560 LPLVVRKRLTLYCFIEPDVPEALSGDIMRIQQVLSNLLSNAIKFTDTG--CIILQARVND 617 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + RVRDTG+G+ ++ + PF Q+ + Q GTGLGL + + +V G + Sbjct: 618 FYLEFRVRDTGLGIPPRDVLRLFDPFFQVGSGVQRHFHGTGLGLAICEKLVSLMDGDIAV 677 Query: 795 FSTPAKGTLIEIIFPLY 811 S+P G++ I P+Y Sbjct: 678 ESSPGLGSIFTIRLPMY 694 >gi|260171984|ref|ZP_05758396.1| two-component system sensor histidine kinase/response [Bacteroides sp. D2] gi|315920296|ref|ZP_07916536.1| two-component system sensor histidine kinase/response [Bacteroides sp. D2] gi|313694171|gb|EFS31006.1| two-component system sensor histidine kinase/response [Bacteroides sp. D2] Length = 1365 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 125/243 (51%), Gaps = 14/243 (5%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 E+NK+ E+ S K F +SHE+RTPL+ I+ E + Q L + Sbjct: 826 ERNKI-------EEISQEKVRFYMNMSHELRTPLSLILAPLEELLGQS--NLKGTPVQQK 876 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 +Y+ ++G +L IVN LLD K E+G M +H V+++E + +A +L + A ++ I Sbjct: 877 LDYVYKNGRKLLHIVNQLLDFRKAEAGAMPIHVAQVNVEELLQDAFALFKENAQKRAISF 936 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 AD V+ I +N+LSNA FTP GG I +S T + VRD+G+ Sbjct: 937 HIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSISLS-LWTEGDTYGFTVRDSGI 995 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 GM+ +L + + F Q+ ++ GTG+GL L K +V+ + G + S PA+ T ++ Sbjct: 996 GMSPEQLTRIFERFYQVDGQRK----GTGIGLSLVKMLVEKHHGTITVASEPAQYTEFKV 1051 Query: 807 IFP 809 P Sbjct: 1052 TLP 1054 >gi|126657352|ref|ZP_01728511.1| hybrid sensory kinase [Cyanothece sp. CCY0110] gi|126621339|gb|EAZ92051.1| hybrid sensory kinase [Cyanothece sp. CCY0110] Length = 764 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 124/238 (52%), Gaps = 6/238 (2%) Query: 577 IAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVI--KNQRFGPLGNPRYIEYANYIDRS 633 +A + ++H KS+FL +SHE+RTPLT IIG S + +Q L + +Y I S Sbjct: 380 VASQAANHSKSEFLGNMSHELRTPLTCIIGLSGTLLHWSQESSNLPIDKQKKYLQTIQNS 439 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +LD++N++L+ S ++SGK L SL + I V A +RI + N Sbjct: 440 GKHLLDMINEILEYSNLQSGKYVLAVREFSLMKVAKNVIQRVSDEAEHRRINLELDLQIN 499 Query: 694 IPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 + AD V+QI ++L+NA+ FT G + + +N+ V L V DTG+G+ Sbjct: 500 AQQDSFYADPERVQQILYHLLNNALKFTSENGTVTLRIWRENNQ-VSLEVEDTGIGIKEE 558 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ + F Q+ NS++ GTGLGL L K +V+ + G + S +G+ + P Sbjct: 559 QIPLLFESFQQLENSRRRMYGGTGLGLALTKQLVELHGGTIEVESIINQGSTFIVRLP 616 >gi|78486252|ref|YP_392177.1| PAS/PAC sensor signal transduction histidine kinase [Thiomicrospira crunogena XCL-2] gi|78364538|gb|ABB42503.1| PAS/PAC sensor signal transduction histidine kinase [Thiomicrospira crunogena XCL-2] Length = 1118 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/256 (30%), Positives = 134/256 (52%), Gaps = 8/256 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DI+ K+ + L A + AEK KS+FL+ +SHE+RTPL +IIGFS+++ Sbjct: 729 VVQDITRRKEAEEHLIQALERAEKADKAKSEFLSSMSHELRTPLNSIIGFSDLLSMADL- 787 Query: 617 PLGNPRYIEY-ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P ++ ++I SG+ +L ++N LL++SKIE G++ L V L++ V +S V Sbjct: 788 ----PEKEQHQVDHISESGHHLLALINQLLELSKIEQGEVELKMTDVVLEDTVHYCLSTV 843 Query: 676 QLYANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A + + L R + + + AD +KQ+ LN LSNAI + G+++++ T Sbjct: 844 DPMAQKYLVELERPDWKSFDYHVYADELKLKQVMLNFLSNAIKYNRPDGKVMLAATLLET 903 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +V + V DTG G+ + + ++ + EGTG+GL + + +V G Sbjct: 904 GKVRISVTDTGYGIPKDKQSNVFNSYDRLGHESSTI-EGTGIGLNITQQLVFLMGGDIGF 962 Query: 795 FSTPAKGTLIEIIFPL 810 S +G+ + FPL Sbjct: 963 SSQENEGSCFWVDFPL 978 >gi|53713403|ref|YP_099395.1| two-component system histidine kinase [Bacteroides fragilis YCH46] gi|52216268|dbj|BAD48861.1| two-component system histidine kinase [Bacteroides fragilis YCH46] Length = 511 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/256 (32%), Positives = 128/256 (50%), Gaps = 14/256 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H I E K ++KL A+ A++ KS FLA +SHEIRTPL AI+GFS +I L Sbjct: 261 HSIQEHKNTEDKLRAARNKAQESDRLKSAFLANMSHEIRTPLNAIVGFSNLIAGG-IVDL 319 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 +Y+ I ++ N +L +V+D+LD+S IES M F L ++E + Q Y Sbjct: 320 DTEEARDYSALISKNCNYLLTLVSDVLDLSCIESDTMTFKFTVYPLTRLLTE---IYQKY 376 Query: 679 ANEKRILIRTSFANNIP----RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 N RI F +P I D ++Q+ ++L NA FT G I Sbjct: 377 EN--RIPQEVQFNLLLPTDNVEIETDAVRLRQVIEHLLDNAAKFTVKGHIDIGYALSDHG 434 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E++ + V DTG G+ + + +K + F +I + Q G GLGL + K +V+ G + Sbjct: 435 EKIYVFVADTGCGIPSDQYKKVFERFYKINSFVQ----GAGLGLSVCKTIVEGLGGTINV 490 Query: 795 FSTPAKGTLIEIIFPL 810 +S +G+ +I PL Sbjct: 491 YSQLKEGSRFSVILPL 506 >gi|312602473|ref|YP_004022318.1| sensory transduction protein kinase [Burkholderia rhizoxinica HKI 454] gi|312169787|emb|CBW76799.1| Sensory transduction protein kinase (EC 2.7.3.-) [Burkholderia rhizoxinica HKI 454] Length = 685 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/267 (31%), Positives = 137/267 (51%), Gaps = 15/267 (5%) Query: 557 TMHDISEWK---QEKNKL----SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 T DI + K QE+ L A+ AE+ S K +F+A +SHE+RTPL AI+G++++ Sbjct: 272 TSTDIDDQKLAAQEREHLLANERQARSEAERASRLKDEFVATLSHELRTPLNAIVGWAQL 331 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + P R + I R+ L +++DLLD+S+I +GK+ L+ + V L + ++ Sbjct: 332 LLRDASDP---ARVEKGLQVIHRNARLQSQMIDDLLDMSRIMAGKVRLNVQRVELVDVIT 388 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 + I+ VQL A+ K +R P ++ D ++QI N+L+NAI FTP G++ ++ Sbjct: 389 DVIATVQLAADAKE--LRVMPVLGAPAVVNGDPARLQQIIWNLLTNAIKFTPRRGRVAVT 446 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 T + + E L V DTG G+ L + F Q S + G GLGL + K +V+ + Sbjct: 447 LT-SGDGEARLVVSDTGCGIREAFLPHVFERFRQEDASTTRQFGGLGLGLSIVKELVEMH 505 Query: 789 MGKFYIFS-TPAKGTLIEIIFPLYDTS 814 G S +G + P T Sbjct: 506 GGHITAASDGEQRGATFTVTLPTVTTG 532 >gi|294677043|ref|YP_003577658.1| signal transduction histidine kinase [Rhodobacter capsulatus SB 1003] gi|294475863|gb|ADE85251.1| signal transduction histidine kinase [Rhodobacter capsulatus SB 1003] Length = 892 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 88/375 (23%), Positives = 173/375 (46%), Gaps = 33/375 (8%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-------------VEDILRKP--- 496 +L +++ + D + +++ EG +L N A ++FGY V + ++ Sbjct: 227 RLEAVIGTSFDAVIVVDHEGKVLEFNGAAERVFGYSHAEAVGQHLNDLIVPEAMKSAKVA 286 Query: 497 -FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 F + P + H L + L R+ + E + + RI K++ + Sbjct: 287 GFKRYRTGGVPRIAGHGL---IGLQARRKDGSVF---PAEISVTATRIGRKEI-----FV 335 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 M DI++ + +L A+ A +++F+A +SHE+RTPL ++G E+++ Sbjct: 336 GYMRDITDRVAAEKELIDARDAAMAGEQAQAEFVAVMSHEMRTPLNGLLGTLELLRET-- 393 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 PL + + ++G ++L VN+ LD+ ++++GK++L EP + + E + + Sbjct: 394 -PL-DASQAALLGSMQKAGEILLSHVNNTLDVERLDAGKLSLSREPFAPMSVLDEIVQMQ 451 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A + + T +P + D ++Q+ LN++ NAI FT G + + H Sbjct: 452 AAGAGARGNRLETRAVGRLPDAVEGDAMRIRQVLLNLVGNAIKFTRDGTITLEAEYHRDQ 511 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 ++ RV DTG+G+ E E+ F + G+GLGL +A+ ++ A G+ + Sbjct: 512 GQLEYRVIDTGIGIPQGETERIFDDFVTLDPELSREATGSGLGLSIARRLMRAMRGQIGV 571 Query: 795 FSTPAKGTLIEIIFP 809 S P +G+ I P Sbjct: 572 ESDPGQGSAFWITLP 586 >gi|254361059|ref|ZP_04977204.1| histidine kinase [Mannheimia haemolytica PHL213] gi|153092545|gb|EDN73600.1| histidine kinase [Mannheimia haemolytica PHL213] Length = 616 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/262 (27%), Positives = 135/262 (51%), Gaps = 9/262 (3%) Query: 543 IIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 ++++KL S + D+ E + E++ +AK EK S KS +A +SHE+RTPL Sbjct: 74 LLVEKLEISRLKLEKAVRDLEELR-EQDAYLNAK--LEKNSRDKSILMATISHELRTPLN 130 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 IIG S+++ + + + EY I+ S + I D++D+ KI+S ++ L + Sbjct: 131 GIIGLSQILLDDK----TTEKQQEYLKTINMSATALAHIFGDIIDLEKIDSSRIELVRKE 186 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTP 720 V ++ + + + A K+I + ++P+ I D + QI N++SNA+ FTP Sbjct: 187 VEFEQLIHDIANFGHFMAGNKQINFEVKYPPDLPKYIYIDHARLSQILWNLISNAVKFTP 246 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 + G+I++ E+ V D+G+G+ + K F Q NS++ + +G+G+GL + Sbjct: 247 ASGRILLEIYQLDKEQFSFAVTDSGIGIPEKDQRKIFDMFYQAENSKEKKAQGSGIGLSV 306 Query: 781 AKAMVDANMGKFYIFSTPAKGT 802 +K + G + S +G+ Sbjct: 307 SKRIAKLMGGDLVVASQENQGS 328 >gi|254411714|ref|ZP_05025490.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181436|gb|EDX76424.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 703 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 103/391 (26%), Positives = 182/391 (46%), Gaps = 57/391 (14%) Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 +++ IIL+ S L G ++DI + F + S++ T +S DL + LEK+ Sbjct: 286 DQQWIILAVTPLESALIG--LQDIRQVLFILTCGLIAASILA---TIYISRDLARPLEKL 340 Query: 529 TLGSTKEEKLLS-LRI----IIKKL-PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 + E +L S RI I+++ + + W +E L A K A+ + Sbjct: 341 RDCALHESQLHSNYRIPHTFKIREINQLAEALDGMFERLKHWAEE---LEAAWKEAQAAN 397 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 K++FLA SHE+RTPL IIG ++K+ +++ D + +L+I+N Sbjct: 398 QLKNEFLATTSHELRTPLNGIIGCLRLVKDGFCD--DREEELDFLQRADEAAIHLLNIIN 455 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702 D+LD++K+ESGK+++ E + L + + E I L + K + T + ++AD Sbjct: 456 DVLDLAKLESGKLSVEVELIDLRQMIDEVIHLQAVSIQSKGLEFNTKNLHEKLPVIADPA 515 Query: 703 SVKQIALNILSNAIHFTPSGGQIIIST--------------------------------- 729 +KQ+ +N++ N+ FT SG I +ST Sbjct: 516 KLKQVLINVIGNSAKFTDSGS-ITVSTQIETGSDKTEPLVSADDSTSVASVSTIPSNKQV 574 Query: 730 --THTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 H + E +V++ V+DTG+G+ + K +PF + S + GTGLGL +++ Sbjct: 575 TENHETGELFPAQVVVTVKDTGIGIDPVQQAKLFRPFVMVDGSTTRKYGGTGLGLAISRN 634 Query: 784 MVDANMGKFYIFST-PAKGTLIEIIFPLYDT 813 +++ G +FS +GT + I PL +T Sbjct: 635 LIELMGGTITLFSAGEGQGTTVNISLPLVET 665 >gi|149198158|ref|ZP_01875205.1| ATP-binding region, ATPase-like protein [Lentisphaera araneosa HTCC2155] gi|149138760|gb|EDM27166.1| ATP-binding region, ATPase-like protein [Lentisphaera araneosa HTCC2155] Length = 640 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/236 (33%), Positives = 125/236 (52%), Gaps = 20/236 (8%) Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 +AE + KS+FLA VSHEIRTP+ AI+GFSE+++ + + + +EY I+ SG Sbjct: 263 VAESANKMKSEFLANVSHEIRTPMNAILGFSELLEKEDI----DKKSMEYVEAINSSGRS 318 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 +L ++ND+LD+SK+E+GK+ L + V L V+E S+ +K + F + + Sbjct: 319 LLHLINDILDLSKVEAGKLELIYTKVDLRSLVNEFASVFSREFAKKNL----DFLVEVDQ 374 Query: 697 ILADLRS-----VKQIALNILSNAIHFTPSG-GQIIISTTHTSNEEVILR--VRDTGVGM 748 ++ DL S ++QI N++ NA+ FT G ++ I N V L V DTGVG+ Sbjct: 375 VVPDLVSLDEVRIRQILFNLIGNAVKFTEEGYVKVAIKADLKRNGVVDLDFVVSDTGVGI 434 Query: 749 TNYELEKAMKPFGQIPNSQQIRGE--GTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + F Q S +I E GTGLGL + K + G + S +G+ Sbjct: 435 GEEANRRIFGAFNQ--ASAEISKEYGGTGLGLSICKELSQLMGGSINLVSAKGEGS 488 >gi|315644224|ref|ZP_07897394.1| multi-sensor signal transduction histidine kinase [Paenibacillus vortex V453] gi|315280599|gb|EFU43888.1| multi-sensor signal transduction histidine kinase [Paenibacillus vortex V453] Length = 609 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 93/368 (25%), Positives = 172/368 (46%), Gaps = 38/368 (10%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L SIL SDG+ + G ++ NR ++ G E++ H Sbjct: 262 KLASILTNMSDGVIATDEAGRVILMNRRAGEMLGVEGEEL----------------AGHD 305 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISEWKQE---K 568 + +L L+ ++ E + + KLL + PF + T +H ++E Sbjct: 306 IVSLLGLEESES-EALARSEGHDSKLLEIVPREGSEPFMMRVTFTPIH-----RREIGIT 359 Query: 569 NKLSHAKKIAEKE--SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN----PR 622 ++ + + E+E + + +F+A VSHE+RTPLT I ++E +++ G L + PR Sbjct: 360 GTIAVLQDVTEQEKLEASRREFVANVSHELRTPLTTIKSYTEALED---GALEDKQMGPR 416 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 ++ I ++ +V DLL +S+++S + LH EP + E + + +K Sbjct: 417 FV---GVIQNETGRMIRLVTDLLHLSRLDSKEAALHKEPTDIVEMLEDVEDRFSFQMKQK 473 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 I + + D + Q+ N++SNA+ +TP GG I + + T + L V+ Sbjct: 474 HIRTIIEVKPGVSTAMLDRDGIDQVLDNLISNALKYTPDGGTITMDASITEEGMLSLSVK 533 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ +L++ + F ++ ++ GTGLGL +A+ +V A+ G + S KGT Sbjct: 534 DTGIGIPKKDLDRIFERFYRVDKARTRNLGGTGLGLSIAREIVRAHGGFITLQSELEKGT 593 Query: 803 LIEIIFPL 810 + PL Sbjct: 594 TVTFTLPL 601 >gi|268318297|ref|YP_003292016.1| PAS/PAC sensor hybrid histidine kinase [Rhodothermus marinus DSM 4252] gi|262335831|gb|ACY49628.1| PAS/PAC sensor hybrid histidine kinase [Rhodothermus marinus DSM 4252] Length = 857 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 126/503 (25%), Positives = 212/503 (42%), Gaps = 43/503 (8%) Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP---KLSDNNAIKPV-- 384 PI VY G + YANP+ L + +D+ G +T L P + + NA K V Sbjct: 224 PIATGVYCRGQVVYANPAMARLFGAERPEDL--LGKTATDLIHPSNLEAALENARKVVER 281 Query: 385 ---------MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + R D R I W E + A+ F ++ + Q Sbjct: 282 REPVSYGRGRIQRLDGRSAIVDFRGVPITW--EGARAVLFFMWDVSEQL----------- 328 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 R +R E E Q ++ E + + R+ L N A +L GY E++ Sbjct: 329 -----RTARRLAEREA-QYQALFE-NAPAPMYVRRDRQFLLVNPAFVRLTGYTAEELTAP 381 Query: 496 PF---TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 F + Q+ P V L + E +E L+ I + Sbjct: 382 GFDAMRLIAPQSIPVVQERLARRRQGLPVPPRYELWIRRKDGKEILVEAISINIRWEGEP 441 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 D+S + + L A++ AE+ S KS FL ++HEIRTP++ I+G+++++++ Sbjct: 442 AVLGFFRDLSAQHEAETYLQQARRQAEEASQLKSRFLELMTHEIRTPISTILGYADLLRD 501 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + P +E+ + I SG +L ++D+LD+S +E+ + L E V+L+E Sbjct: 502 E-LADRIPPELLEFIDVIRESGRRLLGTLSDVLDLSLLETQRRRLETEAVNLNELARRLE 560 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + A K + T R++AD ++ + NI+ NA+ FT SG + H Sbjct: 561 TDFAPMARAKGLRWETEVPEQPVRVVADEEALHRALANIVHNAVKFTESGTVQLRVGQHG 620 Query: 733 SNEEVILRVRDTGVGM-TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 E ++VRDTG GM + +PF Q EG GLG+ +A+ V+A G+ Sbjct: 621 G--EGWIQVRDTGPGMDPAFARTGLFEPFRQESEGTNRHHEGAGLGMTVARRFVEAMRGR 678 Query: 792 FYIFSTPAKGTLIEIIFPLYDTS 814 + + P +GT + + PL + Sbjct: 679 IEVDTAPGRGTTVTVHLPLLEAQ 701 >gi|16127305|ref|NP_421869.1| sensor histidine kinase/response regulator [Caulobacter crescentus CB15] gi|221236107|ref|YP_002518544.1| hybrid sensor histidine kinase/receiver domain-containing protein [Caulobacter crescentus NA1000] gi|13424725|gb|AAK25037.1| sensor histidine kinase/response regulator [Caulobacter crescentus CB15] gi|220965280|gb|ACL96636.1| hybrid sensor histidine kinase/receiver domain protein [Caulobacter crescentus NA1000] Length = 850 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 127/242 (52%), Gaps = 8/242 (3%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L A++ AE S+ KS FLA +SHE+RTPL ++G ++ +++ + P E + Sbjct: 449 RRLRLAQERAEAASTAKSAFLAVMSHELRTPLNGMLGLAQALRSDQL----TPAQREQVD 504 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I SG+ +L ++ND+LD+SKIE+GK+ + L + + + Q A EK + + Sbjct: 505 LILDSGDTLLVLLNDILDLSKIEAGKLEIAPTAGDLVQTCARLVGGYQPTAREKGVTLSF 564 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVR--DT 744 P ++ D V+Q N++SNA+ FT G ++ ++ + + V +R+R DT Sbjct: 565 QLDGEAPGWLMFDGVRVRQCLSNLVSNALKFTSQGKVEVALACYPEAGDRVRVRLRVADT 624 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+GM + K +PF Q S GTGLGL + + +V+ G + S G++ Sbjct: 625 GIGMNAATVAKLFRPFTQADASTTRNFGGTGLGLNITRRLVEMMRGDIQVESEEGVGSVF 684 Query: 805 EI 806 I Sbjct: 685 TI 686 >gi|299148168|ref|ZP_07041230.1| two-component system sensor histidine kinase/response [Bacteroides sp. 3_1_23] gi|298512929|gb|EFI36816.1| two-component system sensor histidine kinase/response [Bacteroides sp. 3_1_23] Length = 1365 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 125/243 (51%), Gaps = 14/243 (5%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 E+NK+ E+ S K F +SHE+RTPL+ I+ E + Q L + Sbjct: 826 ERNKI-------EEISQEKVRFYMNMSHELRTPLSLILAPLEELLGQS--NLKGTPVQQK 876 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 +Y+ ++G +L IVN LLD K E+G M +H V+++E + +A +L + A ++ I Sbjct: 877 LDYVYKNGRKLLHIVNQLLDFRKAEAGAMPIHVAQVNVEELLQDAFALFKENAQKRAISF 936 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 AD V+ I +N+LSNA FTP GG I +S T + VRD+G+ Sbjct: 937 HIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSISLS-LWTEGDTYGFTVRDSGI 995 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 GM+ +L + + F Q+ ++ GTG+GL L K +V+ + G + S PA+ T ++ Sbjct: 996 GMSPEQLTRIFERFYQVDGQRK----GTGIGLSLVKMLVEKHHGTITVASEPAQYTEFKV 1051 Query: 807 IFP 809 P Sbjct: 1052 TLP 1054 >gi|134100028|ref|YP_001105689.1| sensor histidine kinase/response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133912651|emb|CAM02764.1| sensor histidine kinase/response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 1326 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/263 (28%), Positives = 137/263 (52%), Gaps = 16/263 (6%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I + +QE + +H A S++KSDFLA +SHE+RTPL + + ++++ + G L Sbjct: 857 EIEQARQELEERAHELSQA---STYKSDFLANMSHELRTPLNSALILAKLLADNMEGNL- 912 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P+ ++ A I +G +L ++ND+LD+SK+E+G M+L E V L E SL + Sbjct: 913 TPQQVDLAKTIHSAGTDLLQLINDVLDLSKVEAGHMSLLPEDVELSELTEHVESLYRPLT 972 Query: 680 NEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSG-----------GQIII 727 +K + + ++ P + D ++QI N+LSNA+ FT G ++ + Sbjct: 973 EDKGLEFSVVLSPSLPPSLRTDRNRLEQILRNMLSNAVKFTDKGKVELRIRPAPATEVTV 1032 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 ++ V VRDTG+G+ + +L + + F Q+ + + GTGLGL +++ + Sbjct: 1033 PALRSAARRVAFAVRDTGIGIPSDKLSRIFEAFQQLDGTTSRKYGGTGLGLSISRELTTL 1092 Query: 788 NMGKFYIFSTPAKGTLIEIIFPL 810 G+ + S G+ + P+ Sbjct: 1093 LGGELQVRSDVGVGSTFTLYLPV 1115 >gi|23012559|ref|ZP_00052614.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 511 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/251 (31%), Positives = 124/251 (49%), Gaps = 6/251 (2%) Query: 568 KNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 KN+ L A A KS+FLA +SHEIRTP+ +I+G ++ ++ PL E Sbjct: 13 KNRDLEKAVTQARDAERAKSEFLAVMSHEIRTPMNSILGMVHLLMDR---PLAAEDR-EK 68 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + + SG +L I+ND+LD S++E+ + P L V +SL++ A EK + + Sbjct: 69 LSVVHDSGAALLGIINDILDFSRLEADGVQFEDAPFHLGNTVEGVVSLLRGRATEKNLTL 128 Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + +P + D ++Q+ +N++ NAI FT GG ++ V DTG Sbjct: 129 ALDAPSPLPGWVSGDGARLRQVLINLVGNAIKFTTQGGVVLRLRRDGEGNRYEFSVIDTG 188 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ + + +PF Q S R G+GLGL + K +VDA GK + ST G+ Sbjct: 189 IGLEAEQAKNLFQPFHQADASISRRFGGSGLGLAICKKLVDAQGGKIGVDSTKGLGSRFW 248 Query: 806 IIFPLYDTSHP 816 DT+ P Sbjct: 249 FHLDYPDTAAP 259 >gi|330874568|gb|EGH08717.1| sensory box histidine kinase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 595 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 93/375 (24%), Positives = 165/375 (44%), Gaps = 55/375 (14%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L ++L++ DG+ +I+R+G + N + G+ S + Sbjct: 259 RLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGW-----------------DESRLGQS 301 Query: 513 LTEILSL-DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-------------- 557 L E LS +L + L + G T E L I I YS+T Sbjct: 302 LGEALSRPELDEQLHLVLRGGTLERAPEDLAIEIDGESRLLTYSMTPVSHTKGHILGAVM 361 Query: 558 -MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI-IGFSEVIKNQRF 615 +HD++E + + +S+F+ R SHE+RTP+T + + F + + F Sbjct: 362 VLHDVTEQRAFERV--------------RSEFVLRASHELRTPVTGMHMAFGLLQERLHF 407 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P R + N + ++ ++NDLL+ S+ ++G L P S++ + EA + Sbjct: 408 AP--ESREADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLEEAKARY 465 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A E+ I++ +PR+ AD ++++ N+L NA+ TP G I + E Sbjct: 466 EGQAQEQDIVLMLDIQEPMPRLHADQSQLERVLDNLLDNALRHTPPNGLIRLQ-ARRHGE 524 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 I+ V D G G+ + + +PF Q+ + G GLGL L K +V + G+ ++ Sbjct: 525 RAIISVEDNGEGIAYGQQGRIFEPFVQVGRKKG----GAGLGLALCKEIVQLHGGRMGVY 580 Query: 796 STPAKGTLIEIIFPL 810 S P +GT + PL Sbjct: 581 SRPGQGTQFYMALPL 595 >gi|303248510|ref|ZP_07334768.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490130|gb|EFL50050.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 1066 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 98/387 (25%), Positives = 174/387 (44%), Gaps = 48/387 (12%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT-PSVMNHYLT 514 + E + GIA++ +G L N + + GYP E +L F +Q T P ++ + Sbjct: 550 ATFELAAVGIALVGPDGRWLRVNNKLCDILGYPCEALLGMTF----QQITHPDDLDADMG 605 Query: 515 EILSLDLRQTLEKITLGSTKEEKL------------LSLRIIIKKLPFSSCYSLTMHDIS 562 ++ RQ L L + EK L++ ++ + + DI Sbjct: 606 KV-----RQVLAG-NLNTYNREKRYIRKDGSFVWVNLTVALVRDAAGQPDYFISVIEDID 659 Query: 563 EWKQEKNKL-----------SHAKKIA---EKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 K+ + L AK++A E S KS FLA +SHEIRTPL ++G + Sbjct: 660 RRKRAEEALLRSRDELARAAEQAKQLASRAEAASLAKSSFLANMSHEIRTPLNGLMGMMQ 719 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++K + ++YA+ RSG + ++ D+LD+S+IE+ ++ LH P SL + Sbjct: 720 LLKTTAL----DDEQLQYADMAIRSGGRLTRLLGDILDLSRIEAARLTLHVAPFSLADVF 775 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG----- 722 + A EK + + ++PR ++ D ++QI N+ NA+ FT +G Sbjct: 776 AAITETFAPLALEKGLPLVCLANPDLPRNVIGDETRLRQILFNLAGNAMKFTVAGEVRVE 835 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 G ++ ++ V DTGVG+ + +L+ + F Q+ ++ +G GLGL + + Sbjct: 836 GWSLLPLPD-GRARLLFAVSDTGVGIPDDKLDAVGEAFTQVESTYTRDQQGAGLGLAICR 894 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 + G I S GT + ++ P Sbjct: 895 ELTRLMGGSLTIESELGVGTTVWLMLP 921 Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 115/231 (49%), Gaps = 15/231 (6%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP--RYIEYANYIDRSGNLVLDIVN 642 K++F A VSHE+RTPLT I+G +R G P +Y ++R+ L+L V Sbjct: 150 KTNFFANVSHELRTPLTLILGS----LAKRLGAAETPPEARRDY-RVMERNAKLLLAHVT 204 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL---A 699 DLLD++++++G+M L + + S + A E+ I S + PR L Sbjct: 205 DLLDVARLDAGRMELRYARCDMARQARFMASCFESLARERGI----SLTVDAPRALTAEV 260 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759 D+ V++I N+LSNA FTP GG++ + T L V D G G+ + + + + Sbjct: 261 DVEKVRRILQNLLSNAFKFTPDGGRVEMRLARTDGH-FRLTVADDGPGIPDDQKQVVFER 319 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F Q+ + + GTGLGL +AK + G + + PA G + + P+ Sbjct: 320 FRQLDSGENRSHGGTGLGLAIAKEFALLHGGDVTLTTNPAGGAVFTVTLPV 370 >gi|262164909|ref|ZP_06032647.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio mimicus VM223] gi|262027289|gb|EEY45956.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio mimicus VM223] Length = 857 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 137/256 (53%), Gaps = 9/256 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++ + + + A++ AE+ + +++FLA++SHE+RTPL ++G S+++K PL Sbjct: 454 QDVTSIAEAEKQSQVARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT---PL 510 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + E+ + SG +L ++ND+LD S++E GK + L E V + + Sbjct: 511 TDEQR-EHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKSEFRLKELVCAIDRIYRPL 569 Query: 679 ANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-- 735 N+K I L+ S + + +D + QI N+L+NAI FT G I ++ + Sbjct: 570 CNDKGIALVVESNITSATLVRSDQIRINQILFNLLNNAIKFTHQGS-IRVALELIEGDPL 628 Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +++++V DTG+G+ +L +PF Q ++ G+GLGL + ++V+ G+ ++ Sbjct: 629 AQLVIQVMDTGIGIREEDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHV 688 Query: 795 FSTPAKGTLIEIIFPL 810 S GT EI P+ Sbjct: 689 SSEYGHGTRFEIQLPI 704 >gi|302556732|ref|ZP_07309074.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces griseoflavus Tu4000] gi|302474350|gb|EFL37443.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces griseoflavus Tu4000] Length = 643 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 131/260 (50%), Gaps = 5/260 (1%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+ + + + A+++AE + + K+ F + +SHE+RTPLT I+G ++ Q G + Sbjct: 331 IASARSYEAQQRRAEELAELDRA-KTTFFSHISHELRTPLTLIMGPVAELRTQLAG--AD 387 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + + I R+G + +VN LLD S+IE+G+M +EPV L ++ S+ + Sbjct: 388 ACVTDELDVIHRNGLRLGKLVNSLLDFSRIEAGRMQARYEPVDLSRTTADLASVFRSAVE 447 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + + R + D +++ LN+LSNA+ FT G I T + ++ Sbjct: 448 KAGLDFRVDCPQLPEPVYVDRGMWEKVILNLLSNALKFTFDGS--IRVTVRAGDTHAVVT 505 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTGVG+ E+ + + F ++ N++ EG+G+GL L K ++ + G ST + Sbjct: 506 VADTGVGVPRQEMPRLFERFHRVENARSRSHEGSGIGLALVKELIALHGGTITADSTEGE 565 Query: 801 GTLIEIIFPLYDTSHPHDCI 820 GT ++ P P D + Sbjct: 566 GTRFDVRLPFGAAHLPQDAL 585 >gi|226944603|ref|YP_002799676.1| hybrid histidine kinase [Azotobacter vinelandii DJ] gi|226719530|gb|ACO78701.1| hybrid histidine kinase [Azotobacter vinelandii DJ] Length = 642 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/276 (30%), Positives = 142/276 (51%), Gaps = 9/276 (3%) Query: 534 KEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 K+ L+ +R+ + + LP + + DI++ + L + AE+ ++ KS FLA Sbjct: 3 KDGSLMPIRLAVGRVDLPDEVLFVGFVTDITDRYTLEASLRETAERAEQAAAAKSTFLAN 62 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHEIRTP+ +IIGF+E++ P+ + N I +S +L ++ND+LD +K+E Sbjct: 63 MSHEIRTPMNSIIGFTELLLQSNLSPVQR----NHLNTIRQSSRSLLGLLNDILDTTKME 118 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALN 710 G + L SL + S + L A KR+ + T + ++P D + Q+ N Sbjct: 119 KGGLELERTDFSLKGLAMQIESSLYLGAQSKRLTLATHYPRDMPEHFQGDPLRLLQVLTN 178 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 ++ NAI FT G++ + +H + V ++VRDTG+GMT + PF Q S R Sbjct: 179 LVGNAIKFTER-GRVDVVFSH-EEDMVHVQVRDTGIGMTPQQAASIFAPFTQADASISRR 236 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 GTGLG +A +V+ G+ + S +G+ + Sbjct: 237 FGGTGLGTTIAHQLVELMGGRIGVESELGRGSTFHV 272 >gi|170725869|ref|YP_001759895.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169811216|gb|ACA85800.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 1480 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 115/427 (26%), Positives = 191/427 (44%), Gaps = 62/427 (14%) Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM-EI---EVMQLC-SILEATSDGIAII 468 T +PF A PE+ + T I RK+ EI E + L S+LE+T +GI + Sbjct: 528 TIVPFTNAEGKPESYIA-------IRTDITTRKLAEIKTKEALSLMHSMLESTDNGILVT 580 Query: 469 NREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLT------------- 514 + +G IL N + + L+ V+ L + F + +N ++++ Sbjct: 581 SLDGKILQFNESYAALWDIEVKTGLDHREFEL---KNRDKILDYQGVIERIASLYSEPDF 637 Query: 515 ---EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 +IL L + E+++L +E LL R+ + HDIS+ + +N+L Sbjct: 638 EGFDILELTDGRIYERVSLPMKSDEGLLG-RV------------WSFHDISKRMKTQNEL 684 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY----A 627 AK+ A+ KS+FLA +SHEIRTP+ ++G G L N + +Y Sbjct: 685 ILAKEEADLAVKAKSEFLASMSHEIRTPMNGVLGM--------LGLLNNTQLTDYQKRRV 736 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LI 686 + S +L ++ND+LD SKI++GK+ L +L + E + A K + L+ Sbjct: 737 SIAQSSAKSLLTLINDILDYSKIDAGKLELENLDFNLRGMLGEFAEGMAFQAQNKSLELV 796 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VRDT 744 + D ++Q N++ NAI FT G +I + S +E + DT Sbjct: 797 LDLKGIEHSMVTGDPSRLRQALTNLVGNAIKFTSKGEVLIEAGLRDSGDEWCFWCVITDT 856 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ ++ F Q+ S + GTGLGL + + + G I S KGT + Sbjct: 857 GIGIAADKISSLFDSFSQVDASTTRKYGGTGLGLAIVQKICQLMGGDVSITSEVGKGTRV 916 Query: 805 EIIFPLY 811 E F +Y Sbjct: 917 E--FTIY 921 >gi|298242874|ref|ZP_06966681.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297555928|gb|EFH89792.1| integral membrane sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 465 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 126/236 (53%), Gaps = 6/236 (2%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ + L+ ++HE+RTPLT I G+ E ++Q P +P I I L+ Sbjct: 233 ERSEHLRRQLLSNIAHELRTPLTNIRGYLEAFQDQVITP--DPAVIAS---IYEEAMLLS 287 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +V DL D++ E+G++ L ++L++ +++AI+ + L A K+I + A N+P + Sbjct: 288 RMVTDLQDLALAEAGQLRLQRVHIALEDVITKAINALSLQAENKKISFSANIAPNLPLVE 347 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 AD + V QI N+L+NAI +TP G++ +S +E+ + VRD G+G+ L K Sbjct: 348 ADAQRVGQIMRNLLNNAIKYTPEQGEVRVS-ARALQKEIQVSVRDNGMGIAAEHLPYIFK 406 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 F + S+ G+GLGL + + +V A+ G+ + S +GT P+ +S Sbjct: 407 HFYRADTSRTRETGGSGLGLAIVEQLVCAHGGRITVESYVGQGTCFIFTLPIASSS 462 >gi|293395635|ref|ZP_06639918.1| sensor histidine kinase [Serratia odorifera DSM 4582] gi|291421954|gb|EFE95200.1| sensor histidine kinase [Serratia odorifera DSM 4582] Length = 904 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 134/252 (53%), Gaps = 15/252 (5%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L +DIS+ K+ + L+ A + A S KSDFLAR+SHEIR+P+ AI+G E +++QR Sbjct: 404 LGWYDISQRKRLERDLADALQQATDASREKSDFLARMSHEIRSPMNAILGILE-LESQRP 462 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + I YA + +L IV D+LDISKIE+G+++L +P +L +++ + Sbjct: 463 DAADSSLPIAYA-----ASRQLLQIVGDVLDISKIEAGELHLQPQPTALYPLLTQLLETY 517 Query: 676 QLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTH 731 A +K + + + A L D + Q+ N+LSNAI +T G Q+ + + Sbjct: 518 ATLAAQKALRLDSDIEAAWQCDYLLDGTKLTQVLNNLLSNAIKYTERGFVALQVSVQSQD 577 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMG 790 T + V + D+G+G+ +K ++P+ Q PN+ TGLGL + +V G Sbjct: 578 TQYDRVTFSITDSGIGIAPQMQQKILQPYVQADPNT----PASTGLGLAICTQLVQLLGG 633 Query: 791 KFYIFSTPAKGT 802 + I S P G+ Sbjct: 634 ELQIDSAPQHGS 645 >gi|69247565|ref|ZP_00604399.1| PAS [Enterococcus faecium DO] gi|257880369|ref|ZP_05660022.1| histidine kinase [Enterococcus faecium 1,230,933] gi|257891027|ref|ZP_05670680.1| histidine kinase [Enterococcus faecium 1,231,410] gi|257894280|ref|ZP_05673933.1| histidine kinase [Enterococcus faecium 1,231,408] gi|258614680|ref|ZP_05712450.1| sensory box histidine kinase VicK [Enterococcus faecium DO] gi|260562330|ref|ZP_05832844.1| hypothetical protein EFXG_01820 [Enterococcus faecium C68] gi|293559840|ref|ZP_06676355.1| sensor protein YycG [Enterococcus faecium E1162] gi|314943533|ref|ZP_07850298.1| PAS domain S-box [Enterococcus faecium TX0133C] gi|314948949|ref|ZP_07852316.1| PAS domain S-box [Enterococcus faecium TX0082] gi|314994104|ref|ZP_07859421.1| PAS domain S-box [Enterococcus faecium TX0133B] gi|314998035|ref|ZP_07862927.1| PAS domain S-box [Enterococcus faecium TX0133a01] gi|68194789|gb|EAN09266.1| PAS [Enterococcus faecium DO] gi|257814597|gb|EEV43355.1| histidine kinase [Enterococcus faecium 1,230,933] gi|257827387|gb|EEV54013.1| histidine kinase [Enterococcus faecium 1,231,410] gi|257830659|gb|EEV57266.1| histidine kinase [Enterococcus faecium 1,231,408] gi|260073254|gb|EEW61595.1| hypothetical protein EFXG_01820 [Enterococcus faecium C68] gi|291606204|gb|EFF35623.1| sensor protein YycG [Enterococcus faecium E1162] gi|313587965|gb|EFR66810.1| PAS domain S-box [Enterococcus faecium TX0133a01] gi|313591471|gb|EFR70316.1| PAS domain S-box [Enterococcus faecium TX0133B] gi|313597771|gb|EFR76616.1| PAS domain S-box [Enterococcus faecium TX0133C] gi|313644648|gb|EFS09228.1| PAS domain S-box [Enterococcus faecium TX0082] Length = 611 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 92/367 (25%), Positives = 173/367 (47%), Gaps = 39/367 (10%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 ME E +L S+L +DG+ +R G +++ N L E+ + + L+ Sbjct: 256 MEAERNRLDSVLSHMTDGVIATDRRGKVITINDMAVSLLDIKNEEAIGQSILTLLDIEEE 315 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYSLTMHDIS 562 + L ++L L++ T ST E + LR+ I ++ F S +HD++ Sbjct: 316 ----YTLRKLLEDPNEMVLDRST--STLESDQMILRVDFSMIRRESGFISGLVAVLHDVT 369 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQRFGP 617 E EK + +F++ VSHE+RTPLT++ + E + K++ P Sbjct: 370 E--------------QEKTERERREFVSNVSHELRTPLTSMRSYIEALSEGAWKDEEVAP 415 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 +++ +D + ++ ++NDLL++S++++G L E V+ +E V+ + + Sbjct: 416 ----NFLKVT--LDETDRMIR-MINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRFDM 468 Query: 678 YA--NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 EK IR F + D + Q+ NI++NAI ++P GG I T N Sbjct: 469 MVGNQEKNYKIRREFTQRDLWVEVDTDKIIQVVDNIMNNAIKYSPDGGTITCRLLETHNN 528 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V+L + D G+G+ +L + + F ++ ++ GTGLGL +++ ++ A+ G + Sbjct: 529 -VVLSITDQGLGIPKKDLNRVFERFYRVDKARARAQGGTGLGLAISREVIKAHRGAIWAE 587 Query: 796 STPAKGT 802 S KG+ Sbjct: 588 SKEGKGS 594 >gi|283852698|ref|ZP_06369963.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283571876|gb|EFC19871.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 832 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 121/231 (52%), Gaps = 16/231 (6%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHEIRTP+ I+G ++++ +P + I+ S +L ++ND+ Sbjct: 452 KSEFLANMSHEIRTPMNGILGMAQILGGTSL----DPAQQGFLKDIEDSATSLLTLINDI 507 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRS 703 LD SKIE+ ++ L +P L ++ + + + A E + + A ++P + L D Sbjct: 508 LDFSKIEADRLELARDPFGLRGVLASVEAALGVLARENGLELHVDVAPDVPDVLLGDADR 567 Query: 704 VKQIALNILSNAIHFTPSGGQII-ISTTHT----------SNEEVILRVRDTGVGMTNYE 752 ++Q+ +N++ NAI FT GG +I + T + +E++ V DTG+G+ + Sbjct: 568 LRQVLVNLVGNAIKFTRRGGVVIGVQCVETCLAQESAGPDATQELVFSVSDTGIGIRPED 627 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 ++ + F Q S R GTGLGL + + +V G + S P +G++ Sbjct: 628 ADRIFEAFTQADGSYTRRFGGTGLGLAITRRLVGLMGGVIGLESEPGQGSV 678 >gi|16079368|ref|NP_390192.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] gi|221310229|ref|ZP_03592076.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] gi|221314552|ref|ZP_03596357.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319474|ref|ZP_03600768.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. JH642] gi|221323750|ref|ZP_03605044.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. SMY] gi|466195|sp|P35164|RESE_BACSU RecName: Full=Sensor histidine kinase resE gi|410142|gb|AAA67498.1| ORFX18 [Bacillus subtilis subsp. subtilis str. 168] gi|2634746|emb|CAB14243.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] Length = 589 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 97/361 (26%), Positives = 174/361 (48%), Gaps = 32/361 (8%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 QL +IL + +DG+ IN +G IL TN P E L+ + EQN MN Sbjct: 254 QLSNILSSMADGVITINIDGTILVTNP--------PAERFLQ---AWYYEQN----MNIK 298 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 + L + ++ + ST++E+++ + + + L M + + ++ Sbjct: 299 EGDNLPPEAKELFQNAV--STEKEQMIEMTLQ------GRSWVLLMSPLYAESHVRGAVA 350 Query: 573 HAKKIAEKESSHK--SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + + E+ K DF+A VSHE+RTP++ + G+SE I + + + I Y Sbjct: 351 VLRDMTEERRLDKLREDFIANVSHELRTPISMLQGYSEAIVDDIASSEEDRKEIAQIIYD 410 Query: 631 D--RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + R G LV NDLLD++++ESG LH+E ++++E + + I A EK I + Sbjct: 411 ESLRMGRLV----NDLLDLARMESGHTGLHYEKINVNEFLEKIIRKFSGVAKEKNIALDH 466 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + + D ++Q+ N++ NA+ T +GG + IS H+ + + + ++D+G G+ Sbjct: 467 DISLTEEEFMFDEDKMEQVFTNLIDNALRHTSAGGSVSIS-VHSVKDGLKIDIKDSGSGI 525 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L + F + ++ GTGLGL + K +V+A+ G + S KGT Sbjct: 526 PEEDLPFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFSFYI 585 Query: 809 P 809 P Sbjct: 586 P 586 >gi|332093888|gb|EGI98942.1| signal transduction histidine-protein kinase atoS [Shigella boydii 5216-82] Length = 555 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 92/398 (23%), Positives = 188/398 (47%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 176 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 235 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L+ E + L + + Sbjct: 236 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLKHGTEHVALEISFPGRD 288 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 289 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 343 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q + + EY + + + + + ++ LL+ S+ Sbjct: 344 AHEVRNPLTAIRGYVQILRQQTSDLI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 399 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 400 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL 455 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 456 INAVQAISARGKIRIQTWQYSDLQQAISIEDNGCGIDLSLQKKIFDPFF------TTKAS 509 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 510 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 547 >gi|307634891|gb|ADI84465.2| sensor histidine kinase, HAMP and PAS domain-containing [Geobacter sulfurreducens KN400] Length = 690 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 97/397 (24%), Positives = 185/397 (46%), Gaps = 48/397 (12%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL----EQNTPSVMNH 511 S+LE SD I +++ I+ N+ + FG+ E+++ P + L N P V N Sbjct: 284 SLLEDASDAIVVVDENEIVKMVNKMAEEFFGHSSEEVVGLPLSRMLVLVKTHNIPIVYN- 342 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 + E+ R E+I + E+++ L I L I + +E+ L Sbjct: 343 FFQEVGKG--RHVAEEIRFSRVEGEQVVGL--IHANTVTIGSERLIQAIIRDVTREREIL 398 Query: 572 SHAKKIA---EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 + +K A + + K FL SHE++TPLT I+G++E+I + G + + I+ Sbjct: 399 FNLEKSATDLARLNKMKDSFLGIASHELKTPLTVIMGYAELILSDMSGKV-DRNVIDMVQ 457 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I + + +IV D++DIS I+ ++ L + V ++ V ++++ ++ + + ++ + Sbjct: 458 NISNAAARLDNIVKDMVDISMIDERRLRLKLDDVDVNRLVEDSMNELRFFVSMRKQKLVG 517 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST------------------- 729 +PRI D + Q+ N++ NAI FTP GG+I +ST Sbjct: 518 ELDETVPRIKGDPVRLMQLMSNVIGNAIKFTPDGGRITVSTRTKYLLRSKQAPIPELVKP 577 Query: 730 -THTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ-------IRGEGTGLGL 778 + E+ V + + DTG+G+ + + F ++ N ++ + G GLGL Sbjct: 578 VVNIGKEQHLYVEITITDTGIGIDMDDQLRIFDKFYEVGNIEEHSSGKVAFKARGAGLGL 637 Query: 779 PLAKAMVDANMGKFYIFS---TPAK--GTLIEIIFPL 810 +AK +V+ + G+ ++ S P + G+ I+ PL Sbjct: 638 SIAKGIVEMHGGEIWVESPGYNPEQFPGSTFHIVLPL 674 >gi|291518851|emb|CBK74072.1| Signal transduction histidine kinase [Butyrivibrio fibrisolvens 16/4] Length = 779 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/274 (27%), Positives = 144/274 (52%), Gaps = 15/274 (5%) Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 SL +II L + +TM + K +N + + + + F+ R+SHE+RTP Sbjct: 364 SLYLIIGLL-----FLITMAYMRALKDIRNTEREMYAAVQAQDASTA-FMTRMSHEMRTP 417 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 + AI+G +++I + + ++YA ++ +GN +L IVN++LD++K+ +G++ + Sbjct: 418 INAILGMNKMILRES----KDDAILDYARDVNSAGNYLLSIVNEVLDLAKVTAGRIEIIP 473 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHF 718 E L + + E SLV+ A R+ ++ +P +++ D V Q+ N+L+NA+ + Sbjct: 474 EEYDLMDMIRECYSLVRPRAKANRLSFEVDMSDVLPSKLMGDKERVIQVITNLLTNAVKY 533 Query: 719 TPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 TP+ G++ +S +E +I+ V DTG+G+ + F ++ + EGTG Sbjct: 534 TPA-GRVTLSVQGKISEGRLLLIVGVTDTGIGVAEENIPYLFDSFRRVGEFNNKKIEGTG 592 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 LGL + K +V+ G + S KGT ++ P Sbjct: 593 LGLTITKQLVELMGGSISVESELGKGTTFTVMIP 626 >gi|260768322|ref|ZP_05877256.1| hypothetical protein VFA_001373 [Vibrio furnissii CIP 102972] gi|260616352|gb|EEX41537.1| hypothetical protein VFA_001373 [Vibrio furnissii CIP 102972] Length = 568 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/271 (28%), Positives = 130/271 (47%), Gaps = 16/271 (5%) Query: 544 IIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 I+K+L C +L+ I + + E ++K AE+ +F+A ++HE+RTPL Sbjct: 167 IVKQLSLVGELLCSALSRQLIMKRQDE------SRKRAEESEKATKEFVAMINHELRTPL 220 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 ++G +E++ + +P + Y + SG+++ I+NDLLD SK+ +G M L Sbjct: 221 NGLLGSAELLSDTSL----DPEQLSYLTNLQHSGDMLRVIINDLLDFSKMNAGMMQLILT 276 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFT 719 + + A EK+I + P + D+ + QI +N++ NAI FT Sbjct: 277 QFRWQDLEHTLNGIFSPKAREKKIEFVVNTRGEFPTYWIGDVERINQILVNLVGNAIKFT 336 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 G + +E ++LR+ DTG+G+ + PF Q+ S + EGTGLGL Sbjct: 337 HRGA--VTVAARWVDERLLLRISDTGIGIPLAAHDTLFDPFTQVDRSSSRQYEGTGLGLA 394 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + K +V+ G S +GT + PL Sbjct: 395 ICKNLVELMNGSIDFSSVEGEGTEFFVSIPL 425 >gi|237644063|emb|CAY85453.1| histidine kinase 1 [Claviceps purpurea] Length = 1335 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 132/251 (52%), Gaps = 14/251 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 IS + + + A++ AE + KS+FLA +SHEIRTP+ IIG +++ + Sbjct: 703 ISNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDL----T 758 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 E N ++ N +L I++D+LD+SKIE+ +M + P +L V A+ + + AN Sbjct: 759 QYQREMLNIVNNLANSLLTIIDDILDLSKIEARRMVVEEIPYTLRGTVFNALKTLAVKAN 818 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI- 738 EK + + +++P ++ D ++QI LN++ NAI FT G++ ++ +N++ + Sbjct: 819 EKFLDLTYKVDSSVPDHVIGDSFRLRQIILNLVGNAIKFTEH-GEVSLTIKERANQQDVG 877 Query: 739 -------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 V DTG+G+ +L F Q S + GTGLGL ++K +V+ G Sbjct: 878 GGEYSIEFIVEDTGIGIAKDKLNLIFDTFQQADGSMTRKFGGTGLGLSISKRLVNLMGGD 937 Query: 792 FYIFSTPAKGT 802 ++ S KG+ Sbjct: 938 LWVLSEAGKGS 948 >gi|237714586|ref|ZP_04545067.1| two-component sensor histidine kinase [Bacteroides sp. D1] gi|262406452|ref|ZP_06083001.1| two-component sensor histidine kinase [Bacteroides sp. 2_1_22] gi|294643706|ref|ZP_06721506.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294807338|ref|ZP_06766150.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229445355|gb|EEO51146.1| two-component sensor histidine kinase [Bacteroides sp. D1] gi|262355155|gb|EEZ04246.1| two-component sensor histidine kinase [Bacteroides sp. 2_1_22] gi|292640944|gb|EFF59162.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294445468|gb|EFG14123.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 660 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 130/252 (51%), Gaps = 24/252 (9%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL-GNPRYIEYAN 628 +L AK+ AE+ + KS F++ +SHEIRTPL AI+GFS +I G + N EYA+ Sbjct: 419 ELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLI----IGSVEQNDELKEYAD 474 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL--- 685 + + NL+L +++D+LDIS++ESGK+ ++E L I+L N + + Sbjct: 475 IVQTNSNLLLQLISDVLDISRLESGKLQFNYEWCELVNHCQNMITL----TNRNKTVDVD 530 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL-RVRDT 744 I+ + D ++QI +N+L+NA+ FTP+GG I + ++ +L V DT Sbjct: 531 IKLQMPKEPYMLYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVDEEKQCMLFSVTDT 590 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G G+ + E + F ++ Q GTGLGL + K + G +I + G Sbjct: 591 GTGIPEDKQELVFQRFEKLNEFVQ----GTGLGLAICKLTIQYMGGDIWIDKSYKNGA-- 644 Query: 805 EIIFPLYDTSHP 816 IF SHP Sbjct: 645 RFIF-----SHP 651 >gi|237743472|ref|ZP_04573953.1| sensory transduction protein kinase [Fusobacterium sp. 7_1] gi|229433251|gb|EEO43463.1| sensory transduction protein kinase [Fusobacterium sp. 7_1] Length = 623 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 129/245 (52%), Gaps = 18/245 (7%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +LS +K++AE + K++FLA++SHE+RTPLT IIG+S ++ + + E Sbjct: 145 ELSISKEVAESANKAKNEFLAKISHEMRTPLTPIIGYSRIL----LKEINDVSSKEKLEI 200 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL----DEAVSEAISLVQLYANEKRIL 685 I SG +L+ N+LLD SKIESGK++L++E ++ + E I L ++ K I Sbjct: 201 IHTSGVKLLNFTNELLDFSKIESGKVDLNYETFNIRKLFQDIYHEHIDLAKM----KNIN 256 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + + + I +D + +IA NI+ NAI +T G ++ + V D+G Sbjct: 257 FKIDYLHANVSIYSDKIKIYEIAKNIIHNAIKYTEKG--FVLCDIFVEKNTLFFNVYDSG 314 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +GM+ ++ + F QI N Q G GLGL + K +++ GK + S G+ + Sbjct: 315 IGMSEENIKNIFESFVQIGNEQS----GAGLGLSITKKLLEVLNGKIEVESKVGIGSTFK 370 Query: 806 IIFPL 810 I P+ Sbjct: 371 IQIPI 375 >gi|154482552|ref|ZP_02025000.1| hypothetical protein EUBVEN_00219 [Eubacterium ventriosum ATCC 27560] gi|149736577|gb|EDM52463.1| hypothetical protein EUBVEN_00219 [Eubacterium ventriosum ATCC 27560] Length = 436 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 134/240 (55%), Gaps = 4/240 (1%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +K+ + K +K S + +F A VSHE++TPL +I G++E+I+ G+ ++ +A+ Sbjct: 196 DKIHNQHKALKKSSKMRQEFTANVSHELKTPLASISGYAELIETG-MAKEGDIQH--FAS 252 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +S N +L ++ND++++S+++ L VSL+E V + ++Q+ A + I I T Sbjct: 253 EIHKSANRLLSLINDIIELSQLDVMDHQLSTTNVSLNEEVVSCVDMLQMNAEKHNITIAT 312 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 I A+ ++++ N+ NAI + G + ++ ++ +IL+V+D G+G+ Sbjct: 313 DIIEKDCIIKANQEMIQEVIYNLCDNAIRYNKPEGH-VWASVFKKDDNIILQVKDDGIGI 371 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L + + F ++ ++ + GTGLGL + K + + + + I ST +GT I IIF Sbjct: 372 PEDDLNRIFERFYRVDKARSKKTGGTGLGLAIVKHISEQHEAEIQIDSTLGEGTTISIIF 431 >gi|258622613|ref|ZP_05717634.1| sensor histidine kinase LuxQ [Vibrio mimicus VM573] gi|258585069|gb|EEW09797.1| sensor histidine kinase LuxQ [Vibrio mimicus VM573] Length = 857 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 137/256 (53%), Gaps = 9/256 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++ + + + A++ AE+ + +++FLA++SHE+RTPL ++G S+++K PL Sbjct: 454 QDVTSIAEAEKQSQVARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT---PL 510 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + E+ + SG +L ++ND+LD S++E GK + L E V + + Sbjct: 511 TDEQR-EHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKSEFRLKELVCAIDRIYRPL 569 Query: 679 ANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-- 735 N+K I L+ S + + +D + QI N+L+NAI FT G I ++ + Sbjct: 570 CNDKGIELVVESNITSATLVRSDQIRINQILFNLLNNAIKFTHQGS-IRVALELIEGDPL 628 Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +++++V DTG+G+ +L +PF Q ++ G+GLGL + ++V+ G+ ++ Sbjct: 629 AQLVIQVMDTGIGIREEDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHV 688 Query: 795 FSTPAKGTLIEIIFPL 810 S GT EI P+ Sbjct: 689 SSEYGHGTRFEIQLPI 704 >gi|255011930|ref|ZP_05284056.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12] Length = 543 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 87/269 (32%), Positives = 141/269 (52%), Gaps = 15/269 (5%) Query: 545 IKKLPF---SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 + LPF C S H K +++L+ A + A++ KS FLA +SHEIRTPL Sbjct: 284 LSDLPFRIVGICMSTQRH-----KDIEDRLNDALRKAQRSDRLKSAFLANMSHEIRTPLN 338 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 AI+GFS ++ +++ L EYA I+++G L++ +++D+LD+SKIES M + Sbjct: 339 AIVGFSTLLVSEQ-SDLRPEDIEEYAALIEKNGQLLMFLISDILDLSKIESNTMEFNVSV 397 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 SL++ ++ + +L LI A ++ I AD ++Q+ N+++NAI FT S Sbjct: 398 FSLNKMFADIARMQRLNVKPGVELIADLPAEDVS-ITADPVRLEQVVNNLINNAIKFT-S 455 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 G I I ++V L V DTG GM+ + + F + + Q GTGLGL + Sbjct: 456 RGSIRIGYRRRGEKDVELFVEDTGKGMSEEVIAHVFERFYKGDSFVQ----GTGLGLAIC 511 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 K +V+ G+ S +G E+ P+ Sbjct: 512 KTIVEHFGGEIRAESEVGEGARFEVCLPI 540 >gi|226315497|ref|YP_002775393.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] gi|226098447|dbj|BAH46889.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] Length = 607 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 93/367 (25%), Positives = 174/367 (47%), Gaps = 38/367 (10%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP--SVMN 510 +L IL +DG+ NR G I+ NRA + + D+L K T++ P M+ Sbjct: 261 KLAGILSNMTDGVIAANRNGQIILFNRAAEDMLQVTMADVLLKRRTLYDLLGLPPEDEMS 320 Query: 511 HYLTE---ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567 Y E I+ + L KEE +I ++ F+ HD K+ Sbjct: 321 LYAQEEPLIIEMTL----------PNKEE-------VILRVTFTPL----QHD---SKKM 356 Query: 568 KNKLSHAKKIAEKE--SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 ++ + +++ + +F+A VSHE+RTPLT I + E + + G + P + Sbjct: 357 GGIIAVVADVTDQQRLEQQRREFVANVSHELRTPLTTIKSYVEALLD---GAVEEPELSQ 413 Query: 626 -YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + ++ +VNDLL +S+ +S + LH + L+ + A +++ ++ + Sbjct: 414 RFLKVTSSETERMIRLVNDLLQLSRFDSQGVRLHCKEADLNRLLHYAADRFSMFSEQQEV 473 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRD 743 + + +P + DL ++ Q+ N+LSNAI +TP GG +++ + V + + D Sbjct: 474 QLSLDMPSKLPLVYIDLDAINQVLDNLLSNAIKYTPQGGTVVLMAKENHKQRRVQISITD 533 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TG+G+ + +L++ + F ++ ++ RG+ GTGLGL +A+ +V A+ I S GT Sbjct: 534 TGIGIPSRDLKRIFERFYRVDKARS-RGQGGTGLGLAIARELVQAHGADIEITSEWNVGT 592 Query: 803 LIEIIFP 809 + P Sbjct: 593 TVTFWVP 599 >gi|189467204|ref|ZP_03015989.1| hypothetical protein BACINT_03588 [Bacteroides intestinalis DSM 17393] gi|189435468|gb|EDV04453.1| hypothetical protein BACINT_03588 [Bacteroides intestinalis DSM 17393] Length = 720 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 131/250 (52%), Gaps = 10/250 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E K + +L AK+ AE+ + KS FLA +SHEIRTPL AIIGFS ++ Sbjct: 477 ITERKVAERELIAAKERAEESNRLKSAFLANISHEIRTPLNAIIGFSSILTMTE----DE 532 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 EY + I+++ ++L ++ND+LD+SKIE+G ++L++ +L+ + +V+ Sbjct: 533 EEKKEYVSIIEKNNGILLQLINDVLDLSKIEAGVLDLYYSEFALNGVLMTLKGVVESRLQ 592 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 LI + + ++ ++Q+ LN L+NA FT +G I +E+ Sbjct: 593 SSVELIFEPGMPDYYVVCSEKNRLQQLVLNFLTNACKFTSTGS--IRYGYEVREKEIYYY 650 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG G+ +L + F ++ + +Q GTGLGLP+ + ++ G+ + S + Sbjct: 651 VTDTGTGIPEDKLHLIFERFIKLDSFKQ----GTGLGLPICQLIIQNMGGEIGVNSKLGE 706 Query: 801 GTLIEIIFPL 810 G+ PL Sbjct: 707 GSTFWFTLPL 716 >gi|115379186|ref|ZP_01466305.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] gi|115363806|gb|EAU62922.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] Length = 1021 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 126/223 (56%), Gaps = 6/223 (2%) Query: 571 LSHAKKIAEKESSHKS--DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 + +A+ +AE ++++++ +FLA +SHE+RTPLTA++G++++++ +R P + + + Sbjct: 767 IENARLMAESQAANRAKDEFLAVMSHELRTPLTAVLGWTQMLRTRRNDPAIQEKGL---D 823 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+R+ + ++ D+LD+S+I +GK+ LH V L V A+ +V+ A +K + + Sbjct: 824 VIERNARSLAQLIEDVLDVSRILTGKLALHQRAVDLASVVQAAVEVVRPRAEQKGVTLVM 883 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + D ++Q+ N+L NA+ FTPSGG++ + N E + ++D+G G+ Sbjct: 884 EAGVGGGMVTGDPGRLQQVFWNLLVNAVKFTPSGGRVEVRVER-GNAEWRVWIKDSGQGI 942 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 L + F Q S G GLGL + + +V+ + G+ Sbjct: 943 RVEALPHLFERFWQADGSSTREHGGLGLGLAIVRHLVELHGGE 985 >gi|159897332|ref|YP_001543579.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159890371|gb|ABX03451.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 399 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 91/376 (24%), Positives = 165/376 (43%), Gaps = 43/376 (11%) Query: 453 QLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 QL L A D G+ ++N I N +KLFG ++ + M Sbjct: 49 QLFRTLSAALDAGVIVVNDGRTIRYCNDVAAKLFGVSANAVVNHSVITLVRDYQADTMIE 108 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 R+ +++TL + ++RI + LP S L D+++ + L Sbjct: 109 QSIR------RRDPQQVTLQPVLSNR--TIRIWCEPLPESGALILA-RDLTQ----LSLL 155 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 A++ D +A VSHE+RTPL +I E + Q L +D Sbjct: 156 ERARR----------DLVANVSHELRTPLASIKLLVETLATQPPPELAQ----RMLGQVD 201 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 + V+ +V++L ++S+IESG+ L +P +++ V A +Q A K + + + A Sbjct: 202 TELDAVMQLVDELHELSQIESGRTALQLQPTPVEDIVERANDRIQPQAKRKDLRVAVTIA 261 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST---------------THTSNEE 736 ++P + D + Q+ LN+L NA+ +T +GG I I SN Sbjct: 262 PDLPEVYVDRDRISQVLLNLLHNAVKWTDAGGTITIEAGLRSRSELGHHLSRMLEPSNRW 321 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 VI+ + DTG G+ + + + F ++ ++ GTGLGL + K +V+ + G ++ S Sbjct: 322 VIMAIHDTGAGIPAEAIPRIFERFYKVDRARTRGVGGTGLGLAIVKHLVEGHGGVVWVAS 381 Query: 797 TPAKGTLIEIIFPLYD 812 + +G+ + P+ + Sbjct: 382 SEGRGSTFTVALPVVE 397 >gi|260062917|ref|YP_003195997.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region [Robiginitalea biformata HTCC2501] gi|88784485|gb|EAR15655.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region [Robiginitalea biformata HTCC2501] Length = 576 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 113/233 (48%), Gaps = 8/233 (3%) Query: 581 ESSHKSDFL-ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 E+S S L A VSHEIRTPL+ IIGF++++ PLG R EY I + + +L+ Sbjct: 65 EASRDSQMLIATVSHEIRTPLSGIIGFTDLLSES---PLGE-REAEYVGAIRSAAHGLLE 120 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL- 698 IVN+L + S IESG P + + + E L + + RT A ++P +L Sbjct: 121 IVNELREFSTIESGTWKATSIPFNPKQVLGEVGYLCKTLIVRDNVAFRTEIARDLPDLLL 180 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756 D + QI +N+L NAI FT SG + L V DTG G+ +L Sbjct: 181 GDPSKLSQILMNLLGNAIKFTASGHITLRMRCEWRKRTCTLHGEVEDTGPGIQPSDLGLI 240 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 PF Q + + +G GTGLGL + K +++ G + S P G+ P Sbjct: 241 FNPFHQGGQTGETQGIGTGLGLSIVKKIIERQGGAIWAESEPGSGSRFSFRLP 293 >gi|86144427|ref|ZP_01062759.1| Signal transduction histidine kinase [Vibrio sp. MED222] gi|85837326|gb|EAQ55438.1| Signal transduction histidine kinase [Vibrio sp. MED222] Length = 857 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/267 (29%), Positives = 141/267 (52%), Gaps = 17/267 (6%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI++ + + + A++ AE +S ++DFLA++SHEIRTPL I+G S+++K + Sbjct: 453 QDITKLIEAERQADRAREEAEHLASVRADFLAKMSHEIRTPLNGILGVSQLLKR----SI 508 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + + + S +L ++ND+LD SKIE G+ N+ + L E V+ S+ + Sbjct: 509 HDEDNRDQVDVLCHSAEHLLAVLNDILDFSKIEQGQFNIQKKDFLLGELVNTLDSIYRPL 568 Query: 679 ANEKRI--LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-------QIIIST 729 +K + I ++I +I D + QI N+LSNA+ FT G + I++T Sbjct: 569 CEDKSVEFTIVNHLVDDI-KIHTDQVRLNQIMFNLLSNALKFTHQGSISVSFEIESILNT 627 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + S +I+RV+D+G+G+ +++ +PF Q + G+GLGL + K +VD Sbjct: 628 DYAS---LIVRVKDSGIGIDESKIDAIFEPFVQAEETTTREYGGSGLGLTIVKNLVDMLE 684 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHP 816 G + S +G+ + P+ S P Sbjct: 685 GDIQVRSVKDQGSEFIVEIPVELHSKP 711 >gi|294501967|ref|YP_003565667.1| two-component sensor histidine kinase WalK [Bacillus megaterium QM B1551] gi|294351904|gb|ADE72233.1| two-component sensor histidine kinase WalK [Bacillus megaterium QM B1551] Length = 635 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 92/374 (24%), Positives = 168/374 (44%), Gaps = 45/374 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E E +L S+L +DG+ +R+G ++ N + + E +L P L+ Sbjct: 287 EGERRKLSSVLAHMTDGVIATDRKGRVILINDPAAAMLNVSRETVLSDPVVSLLDLEETH 346 Query: 508 VMNHYLT--EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 L E L LD + L +T + I K+ F + + +HDI+E Sbjct: 347 TFESLLANQESLILDFSTKSDPFILRAT-------ISAIQKETGFINGIIIVLHDITE-- 397 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQRFGPLGN 620 EK + +F+A VSHE+RTPLT + + + + +++ P Sbjct: 398 ------------QEKIDQDRREFVANVSHELRTPLTTMRSYLDALAEGAWQDKDLAP--- 442 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + N ++ +VNDLL +SK++S +P++ + I ++ Sbjct: 443 ----TFLNVTQTETERMIRLVNDLLQLSKLDSQDYRFSRDPINFVKFYHYIIDRFEMTIE 498 Query: 681 EKRILIRTSFANNIPR----ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 + SF ++P + D + Q+ NI+SNAI ++P GG I S ++E Sbjct: 499 QG-----ISFVRDLPNEAIYVAIDQDKITQVLDNIISNAIKYSPEGGTITFSIAQHTHE- 552 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +++ ++D G+G+ L K + F ++ ++ + GTGLGL +AK +++A+ G+ + S Sbjct: 553 IVVSIKDQGMGIPKSNLAKIFERFYRVDKARTRKLGGTGLGLAIAKEIIEAHDGRIWADS 612 Query: 797 TPAKGTLIEIIFPL 810 KGT I P+ Sbjct: 613 QEGKGTTIYFTLPI 626 >gi|293410583|ref|ZP_06654159.1| sensory histidine kinase AtoS [Escherichia coli B354] gi|291471051|gb|EFF13535.1| sensory histidine kinase AtoS [Escherichia coli B354] Length = 608 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 187/398 (46%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 229 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 288 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 289 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 341 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 342 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 396 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q + + EY + + + + + ++ LL+ S+ Sbjct: 397 AHEVRNPLTAIRGYVQILRQQTSDLI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 452 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + RI + N + I AD +KQ+ LNIL Sbjct: 453 SQ----WQQVSLNALVEETLVLVQTAGVQARIDFISELDNELSPINADRELLKQVLLNIL 508 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 509 INAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFF------TTKAS 562 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 563 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 600 >gi|206580985|ref|YP_002237365.1| sensor kinase protein RcsC [Klebsiella pneumoniae 342] gi|206570043|gb|ACI11819.1| sensor kinase protein RcsC [Klebsiella pneumoniae 342] Length = 946 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 130/253 (51%), Gaps = 7/253 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 443 DVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKAL-PKG 501 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 502 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLPLV 558 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P ++ D ++Q+ N+LSNAI FT +G II + + + Sbjct: 559 VRKQLGLYCFIEPDVPEQMSGDPMRLQQVISNLLSNAIKFTDTG--CIILHVQCAGDYLQ 616 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + VRDTG G+ E+ + PF Q+ Q +GTGLGL + + ++ G + + P Sbjct: 617 ISVRDTGEGIPAKEVLRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIAVETEP 676 Query: 799 AKGTLIEIIFPLY 811 G+ I PLY Sbjct: 677 GMGSRFTIRIPLY 689 >gi|167764948|ref|ZP_02437069.1| hypothetical protein BACSTE_03340 [Bacteroides stercoris ATCC 43183] gi|167697617|gb|EDS14196.1| hypothetical protein BACSTE_03340 [Bacteroides stercoris ATCC 43183] Length = 828 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/257 (31%), Positives = 134/257 (52%), Gaps = 20/257 (7%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +DI+E K+ + KL AK+ AE KS FLA +SHEIRTPL AI+GFS ++ Sbjct: 586 YDITELKETEAKLIDAKEKAETADRLKSAFLANMSHEIRTPLNAIVGFSSLLVQGE---- 641 Query: 619 GNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 NP E Y ++ + L+L +++D+LD+SKIE+G + + + +++ + + ++L Sbjct: 642 -NPEEREQYMAIVEENNELLLQLISDILDLSKIEAGTFDFVKQELDVNQLCEDMVRTMKL 700 Query: 678 YANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A R + F + +P I++D + Q+ N ++NAI FT +G I + E Sbjct: 701 KA---RPGVEVVFDHRLPECIIVSDRNRLNQVIANFMNNAIKFTSTGS---IRLGYGQAE 754 Query: 736 EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +LR V DTG+G+ EK + F + GTGLGL ++K++V+ G Sbjct: 755 TNLLRFYVADTGIGIIQ---EKQAEIFDRFVKLNSFV-HGTGLGLSISKSIVEQLGGTIG 810 Query: 794 IFSTPAKGTLIEIIFPL 810 + S KG P+ Sbjct: 811 VESESGKGACFWFTLPV 827 >gi|146301663|ref|YP_001196254.1| GAF sensor hybrid histidine kinase [Flavobacterium johnsoniae UW101] gi|146156081|gb|ABQ06935.1| GAF sensor hybrid histidine kinase [Flavobacterium johnsoniae UW101] Length = 662 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 126/238 (52%), Gaps = 11/238 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L KKIAE+ K FLA +SHEIRTPL AIIGF++++ + N +Y N Sbjct: 168 QLDAQKKIAERAVLAKDSFLANMSHEIRTPLNAIIGFTDLLAQTKL----NAVQRDYINS 223 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + +G +L IVND+LD+SK+ESG + + P +L + +L+++ K + Sbjct: 224 VQIAGENLLLIVNDILDLSKMESGNLTIEAVPFNLKNTLKHVYNLLKIKV-PKEVEFNLF 282 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDT 744 ++P ++ D + QI +N++ NA+ FT G++ +S E + V+DT Sbjct: 283 LDADMPEMVIGDEGRLNQILVNLIGNALKFTHE-GEVTVSVKMIEETETHYSLKFSVKDT 341 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G+ +L+ + F Q +S + GTGLGL + K +++ + + S KG+ Sbjct: 342 GIGIPPKKLKTIFERFTQAEDSTTRKFGGTGLGLNIVKQLIELQNAEINVKSEQNKGS 399 >gi|150390625|ref|YP_001320674.1| multi-sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149950487|gb|ABR49015.1| multi-sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 588 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 96/354 (27%), Positives = 181/354 (51%), Gaps = 29/354 (8%) Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 +A+ N+ +IL N A KLF +E+ + K + N +++ + EI + + Sbjct: 259 VAVDNKSQVIL-LNPAAEKLFNTTMEEAMGKHILEVIRNN---LLDEQIKEIFEKNEAKQ 314 Query: 525 LEKITLGSTKEE--KLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEK 580 +E +TL KE K+ + I ++ P + L M D+SE + K Sbjct: 315 IE-VTLKEPKERILKVYTNPIQLEHDP-TRIIGLVALMEDVSEIR--------------K 358 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY-IEYANYIDRSGNLVLD 639 +S+F+A VSHE++TPLT+I GF E +K+ G + + + + + ID + Sbjct: 359 LEKMRSEFVANVSHELKTPLTSISGFIETLKS---GAIEDEETKMRFLDIIDIETERLAR 415 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699 ++ND+L +S+IE+ +L + + +EA+ + I ++ A K I + + N+P ++ Sbjct: 416 LINDILTLSEIENNHSHLAGQGIKTNEALKDVIEMMTPIAQNKSIRLGSQVELNLPILIG 475 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759 + KQ+ +N++ NA+ +T GG++ IS N V+ V+D GVG+ ++ + + Sbjct: 476 NQDWFKQMFINLIDNALKYTSEGGRVQISAYKKYN-HVVFSVKDCGVGIPKKDIPRLFER 534 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 F ++ ++ + GTGLGL + K +V + G+ + S KGT +I P+ +T Sbjct: 535 FYRVDKARTRKVGGTGLGLAIVKHIVLSLNGRIKVNSEVGKGTEFILIVPIDET 588 >gi|325927603|ref|ZP_08188833.1| putative periplasmic ligand-binding sensor domain [Xanthomonas perforans 91-118] gi|325542037|gb|EGD13549.1| putative periplasmic ligand-binding sensor domain [Xanthomonas perforans 91-118] Length = 1181 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 131/250 (52%), Gaps = 12/250 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +QE +++AE+ S KS FLA + HE+RTP+T ++G SE++ PL N + Sbjct: 794 QQEWVLTQQRQQLAEQASIAKSHFLATLGHEVRTPMTGVLGMSELLLAT---PL-NAKQR 849 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 Y + I ++G +L +VND LD+++IE+GK+ L +P + E + A+ + Sbjct: 850 GYVDAIRKAGTHLLRLVNDALDLARIEAGKLELVQQPFDPAQLTQELAHFMHPIADARG- 908 Query: 685 LIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 +R + N +P ++ D V+QI +N+L NAI F G + + H + + +V Sbjct: 909 -LRLEYRNQLPPHVVVVGDATRVRQILINLLGNAIKFAERGEVSLTVSQH--GDALRFKV 965 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQ-QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 RDTG G+ + + ++ + F Q ++ R G+GLGL + + + A G+ + S Sbjct: 966 RDTGPGIGSEQQKRLFQRFEQGEGARTSSRYGGSGLGLAICQELTVAMKGRIRVRSRLGV 1025 Query: 801 GTLIEIIFPL 810 GT + PL Sbjct: 1026 GTQFTVDLPL 1035 >gi|325859789|ref|ZP_08172919.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Prevotella denticola CRIS 18C-A] gi|325482715|gb|EGC85718.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Prevotella denticola CRIS 18C-A] Length = 896 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 122/236 (51%), Gaps = 9/236 (3%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 + I E+ ++ K F +SHE+RTPLT I E I + P +P+ + R+ Sbjct: 381 RHIEEEATTAKLQFFTNISHELRTPLTLIADPVEYIIHD---PNLSPQQRNMLQIVQRNV 437 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 ++ +V+++LD KI++GKM LH +L E + + + L A +K I ++ S + + Sbjct: 438 AVLSRLVSEILDFRKIQNGKMRLHLSDFNLSECMRQWLDLFATSARKKHITLQLSVPSAL 497 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 P + AD +++I N+LSNA+ +TP GG I + + ++V + V D G G+ +L Sbjct: 498 P-MRADRDKLERICYNLLSNAMKYTPEGGCIGFAAS-VEADKVKIMVSDNGCGIAQNDLP 555 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F Q N+ G GTG+GL L KA D + G+ + S +G + PL Sbjct: 556 YVFDRFYQASNA----GHGTGIGLALVKAFADLHHGEVTVESKEGEGCTFTVCMPL 607 >gi|84623857|ref|YP_451229.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84367797|dbj|BAE68955.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 1131 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 121/241 (50%), Gaps = 10/241 (4%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP--LGNPRYIEYANYID 631 A+ AE S K +FLA +SHE+RTPL AI+G+S +++++ P LG I I+ Sbjct: 736 ARAQAEHASRVKDEFLATLSHELRTPLNAILGWSRLMQSEMTEPTHLGRGLVI-----IE 790 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF- 690 RS I++DLLD+S I SGK+ L E + V + L+Q A + I + Sbjct: 791 RSARAQTQIIDDLLDMSAILSGKIRLQAEHFDIAGLVRSTLELMQPTALAREIALELDAP 850 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + D ++Q+ N+LSNA+ FTP GG + ++ +E + L V+DTG+G+ Sbjct: 851 CDGELWFFGDAGRLQQVLTNLLSNALKFTPVGGTVRVAMD-IEDERLRLCVQDTGIGIAA 909 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 L F Q R G GLGL +++ +VD + G S +G L I+ P Sbjct: 910 DFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEGQGALFTIVLP 969 Query: 810 L 810 Sbjct: 970 F 970 >gi|290508496|ref|ZP_06547867.1| two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [Klebsiella sp. 1_1_55] gi|289777890|gb|EFD85887.1| two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [Klebsiella sp. 1_1_55] Length = 946 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 130/253 (51%), Gaps = 7/253 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 443 DVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKAL-PKG 501 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 502 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLPLV 558 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P ++ D ++Q+ N+LSNAI FT +G II + + + Sbjct: 559 VRKQLGLYCFIEPDVPEQMSGDPMRLQQVISNLLSNAIKFTDTG--CIILHVQCAGDYLQ 616 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + VRDTG G+ E+ + PF Q+ Q +GTGLGL + + ++ G + + P Sbjct: 617 ISVRDTGEGIPAKEVLRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIAVETEP 676 Query: 799 AKGTLIEIIFPLY 811 G+ I PLY Sbjct: 677 GMGSRFTIRIPLY 689 >gi|242280736|ref|YP_002992865.1| histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123630|gb|ACS81326.1| histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 774 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 133/242 (54%), Gaps = 14/242 (5%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A K + KS FLA +SHEIRTP+ AI+G +E++ + R++E + SG + Sbjct: 260 AAKGTRAKSQFLAAMSHEIRTPMNAILGMAEILADSHLDD-EQRRFVEI---LQESGESL 315 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696 L ++N++LD+SKIE+G++ ++LD + +A + + K + + + ++P + Sbjct: 316 LHLINEILDLSKIEAGEVAFEKRDLNLDRIIGKAFKVTAHAGHGKGLELAYNINRDVPVQ 375 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------HTSNEEVILRVRDTGVGM 748 ++ D ++QI +N++ NAI FT G +++ T+ + + ++ V+D+G+G+ Sbjct: 376 LMGDPSRLQQIFVNLIGNAIKFTERGF-VVVETSLVQPDMADNGGSLKIHFAVKDSGIGI 434 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + +L+ F Q +S + GTGLGL + K++ +A GK ++ S GT + + Sbjct: 435 EDDKLDSIFDRFTQADSSTTRKYGGTGLGLSICKSLCEAMGGKIWLESRKGFGTTVHMEL 494 Query: 809 PL 810 P Sbjct: 495 PF 496 >gi|145299703|ref|YP_001142544.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142852475|gb|ABO90796.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 698 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/267 (28%), Positives = 136/267 (50%), Gaps = 9/267 (3%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y T D+ + + +L+ A+ AE + KS FLA ++HEIR+P+ A++G +++++ Sbjct: 303 YRGTARDVGNQIRREQELARARDEAEAANRAKSQFLAMMTHEIRSPMNAVLGMLDLLQHA 362 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + P+ + S L+ I++D+LD SKIES + H E + + I Sbjct: 363 QL----EPQQQTLLGHATHSARLLQTIIDDVLDFSKIESHTLEFHCETLHPTQLCQSLIE 418 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +Q A+ K I++R +P ++ D + Q+ N+L NA+ FT G + Sbjct: 419 PLQARASSKGIILRWLVDEAVPPQLQGDPVRLSQVISNLLGNAVKFTSQGS--VSLQLGW 476 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 +E + + V DTG+G++ + +PF Q+ +S R GTGLGL ++K +V+ G+ Sbjct: 477 RHERLRVSVTDTGIGISAEDQALLFEPFSQVDSSATRRFSGTGLGLAISKRLVELMGGEI 536 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHPHDC 819 + S P +G+ F L + P +C Sbjct: 537 RLQSAPGQGSC--FWFELPGMALPCEC 561 >gi|332707381|ref|ZP_08427431.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332353872|gb|EGJ33362.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 1221 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/270 (28%), Positives = 133/270 (49%), Gaps = 11/270 (4%) Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 P S Y + D +E + +L+ + + K +FLA +SHE++TP+TAI+G S Sbjct: 479 PNSQLYLVLAQDTTEQRLFAQELAAKNADLVQLNRLKDEFLACISHELKTPITAILGLST 538 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL---- 664 ++K+Q G L N R YA I +SG ++ +VND+LD++++E+G++ L EPV + Sbjct: 539 LLKDQALGEL-NQRQSRYAQLIYQSGRKLMTVVNDILDLTRMETGQLKLTLEPVPIRTVC 597 Query: 665 DEAVSEAISLVQLYANEKR-----ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 D A +A S + +E ++ ++AD ++Q+ ++ SNA+ FT Sbjct: 598 DRAYDQARSEIDSKHSEDNNRDYPTKFTLEIEASLEMLIADELRLRQMLAHLFSNALKFT 657 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 G+I + + V DTG+G+ + + F Q+ EGTGLGL Sbjct: 658 DGSGEIGLKVNWWQG-WIAFTVWDTGIGIPADKQHLIFQKFQQLEKPLTRSFEGTGLGLV 716 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L + + + G S G+ ++FP Sbjct: 717 LTQHLAHLHGGDVSFISKAGLGSQFTLLFP 746 >gi|303247580|ref|ZP_07333851.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302491060|gb|EFL50954.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 839 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/272 (30%), Positives = 131/272 (48%), Gaps = 20/272 (7%) Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 KLP S M D++E + + L+ A + AE + KS+FLA +SHEIRTP+ I+G Sbjct: 409 KLPDGSGIIEAMVDVTELMRTRQNLTRAMEAAEAANKAKSEFLATMSHEIRTPINGIMGM 468 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 +E+ G R EY + +S +LDIVND+LD S+IE+G++ L P S Sbjct: 469 TELALQTDL--TGEQR--EYLDLARQSALSLLDIVNDILDFSRIEAGRVELSAAPFSPRR 524 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQI 725 + + L A + S ++P L D + Q+ N++SN + FT +G Sbjct: 525 MLGRCLRLFDTLAARHGNTLSLSVHPDVPETLIGDAGRLGQVVANLVSNGLKFTRNGDVR 584 Query: 726 IISTTHTSNE---------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 + T NE ++ V DTG+G+ + ++ +PF Q+ S Sbjct: 585 LCVEPDTQNEILCADPSDTPPGNRVSLLFSVIDTGIGIPAAKQDRIFEPFTQLDGSLTRG 644 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GTGLGL + +V G+ ++ S P KG+ Sbjct: 645 VGGTGLGLSICNNLVALMGGRLWLSSRPGKGS 676 >gi|289622415|emb|CBI51037.1| putative histidine kinase group protein [Sordaria macrospora] Length = 1333 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/258 (29%), Positives = 124/258 (48%), Gaps = 10/258 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI EK +L + A++ S KS FLA +SHEIRTP+T +IG +E++ + Sbjct: 701 RDIEAQVLEKRQLLANEAAAKEASRLKSQFLANMSHEIRTPITGVIGMAELLLDVGL--- 757 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + E I RS N +L ++ND+LD SKIESG++++ SL + E ++ Sbjct: 758 -DAEQRELTENIFRSANALLTVINDILDFSKIESGRLDIEEVQFSLAVVIQEVSKMLSFT 816 Query: 679 ANEKRILIRTSFANNIPR---ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHT 732 A K + ++I ++ D ++Q+ N+ N I F G + + Sbjct: 817 AERKGLTFNYEICSDIALDLVVMGDPGRLRQVLCNLAQNGIKFCHEGHVKLNVFVEQETN 876 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 EV ++DTG+G+ L+ +PF Q S + GTGLGL ++K +++ G+ Sbjct: 877 DTIEVKFVIQDTGIGIEEEVLKGLFQPFSQGDASTARKFGGTGLGLTISKNLLELMNGRM 936 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S +GT P Sbjct: 937 ALASKRGEGTTATFWIPF 954 >gi|270296316|ref|ZP_06202516.1| two-component system sensor histidine kinase [Bacteroides sp. D20] gi|270273720|gb|EFA19582.1| two-component system sensor histidine kinase [Bacteroides sp. D20] Length = 1037 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/257 (32%), Positives = 133/257 (51%), Gaps = 14/257 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E K+ + +L AK AE+ + KS FLA +SHEIRTPL AI+GFS ++ + Sbjct: 652 ITERKKMETELVSAKNRAEESNKLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEEKQ 711 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL-YA 679 EY + I+ + L+L +++D+LD+SKIE+G M L++ + E SL+ L + Sbjct: 712 ----EYVSIIENNNTLLLQLISDILDLSKIEAGTMEFIDTDFELNKVMRELESLLCLKLS 767 Query: 680 NEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 EK + + SF +P I ++ + Q+ +N+++NAI FT G I ++ + Sbjct: 768 PEKNVTL--SFEPGLPECHIHSERNRLSQLVINLVTNAIKFTQEGS-IRFGYKLQDDKML 824 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V DTG G+ + E F ++ N Q GTGLGL + + +V G + S Sbjct: 825 YFYVSDTGCGIPEDKQESIFGRFVKLNNFAQ----GTGLGLSICQMLVQHMGGNIGLTSK 880 Query: 798 PAKGTLIEIIFPLYDTS 814 P +G+ P TS Sbjct: 881 PGEGSTFWFTLPYVPTS 897 >gi|264677650|ref|YP_003277556.1| Proline sensor PrlS [Comamonas testosteroni CNB-2] gi|262208162|gb|ACY32260.1| Proline sensor PrlS [Comamonas testosteroni CNB-2] Length = 1755 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/285 (28%), Positives = 141/285 (49%), Gaps = 30/285 (10%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ KQ +N L A++ AE+ + KS FLA +SHEIRTP+ A++G ++++ + Sbjct: 997 QDITIRKQFENSLELARQQAEQANVAKSQFLANMSHEIRTPMNAVLGMLQLVRQTQL--- 1053 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + R +Y + +L ++ND+LD SKI++GK+ L SL++ + E ++ Sbjct: 1054 -DTRQQDYVVKAQSAAQSLLALLNDILDFSKIDAGKLELDIHAFSLEDMLRELAVVLSGN 1112 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEE 736 + K + + ++P + D + QI +N+ NA+ FT +G +I +S Sbjct: 1113 QHHKTVELMFEVDPSLPLEVRGDKLRILQILINLGGNALKFTEAGQVVIHLSALRQDAAS 1172 Query: 737 VILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V L+V DTG+G+T +L + F Q +S R G+GLGL + + +V + + Sbjct: 1173 VTLQVSVTDTGIGITPEQLSRIFNGFTQAESSTTRRFGGSGLGLVICQRLVALMGSELRV 1232 Query: 795 FSTPAKGTL---------------IEIIFPLYDTSHPH-----DC 819 S P +G+ I ++ P D SH H DC Sbjct: 1233 DSEPGRGSCFSFELCLEVENKALSISVVAP--DISHCHVLVVDDC 1275 >gi|182680138|ref|YP_001834284.1| histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182636021|gb|ACB96795.1| histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 647 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 115/236 (48%), Gaps = 8/236 (3%) Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 + K++F A++SHEIRTP+ I+G +E++ P Y I SG+ + + + Sbjct: 112 AAKTEFFAKISHEIRTPINGILGLTELLLATGL----TPEQKNYVEAIRGSGSALASLTD 167 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADL 701 LLD SKIE+GKM L EP + V L+ A K + I +S A ++P L D Sbjct: 168 ALLDFSKIEAGKMILAEEPFGISPLVEGVTELLAPKAQGKGLDIASSIALDVPETLVGDP 227 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 ++Q+ LN+ NA+ FT GG I + S + + V DTG G+ E + F Sbjct: 228 LRLRQVLLNLAGNAVKFTEQGG-IGVKVFRESADSLCFEVIDTGPGVPPTCRETIFQDFE 286 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 Q +Q+ GTGLGL ++K +V+ G ++ S G L PL P Sbjct: 287 Q--GTQKGCESGTGLGLAISKRLVERMGGSLHLASPLEGGALFSFSLPLRVEGEPQ 340 >gi|156744216|ref|YP_001434345.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156235544|gb|ABU60327.1| integral membrane sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 579 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/266 (30%), Positives = 136/266 (51%), Gaps = 5/266 (1%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 M D+ + KQ + A+ AE S KS FLA +SHE+RTPL AI+G+ +++ + Sbjct: 282 MEDLVQRKQAEEAAHRAQAAAEAASHAKSMFLATMSHELRTPLNAILGYVQLLHLEA-QI 340 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 G + I +G +L I++++LD SKIE G+MN+ + ++ E IS+++ Sbjct: 341 HGRSEMLPDLERIRSAGKHLLTIISNILDFSKIEQGRMNVEIDTFNVSVIAHEMISIIEP 400 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG--GQIIISTTHTSNE 735 A + + + +I + +D V+QI N+LSNA+ FT +G I + + Sbjct: 401 LARNRNNTLTLTCPPDIGMMQSDAGKVRQILFNLLSNAVKFTDNGTVALTIERECCSDGD 460 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG-EGTGLGLPLAKAMVDANMGKFYI 794 V V DTG+GM+ +L + +PF Q+ S GTGLGL L++ + G + Sbjct: 461 WVRFSVADTGIGMSPEQLTRLFQPFTQVHQSHSSHAHRGTGLGLALSQQLCRLLGGDISV 520 Query: 795 FSTPAKGTLIEIIFP-LYDTSHPHDC 819 S +G++ + P + T+H D Sbjct: 521 TSEVGRGSVFTVRLPAVISTAHTADV 546 >gi|332879435|ref|ZP_08447131.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682625|gb|EGJ55526.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 1347 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 6/234 (2%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE+ + K F +SHEIRTP+T I+G + + N F + Y + R+ + Sbjct: 819 AEQLNEMKLQFFMNLSHEIRTPMTLIVGPLQHLINTDFDEIRQRSY----RMMSRNAERI 874 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L +VN +LD+ KI+ G+M + +PV+L + V + L A EK I + + I Sbjct: 875 LALVNQILDLRKIDKGQMMMKMQPVNLVDFVRDVYELFDSKAREKEIHFHFEYDTDYIEI 934 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D ++ ++ +N+LSNA FTPS G I I +V + V D G+ + ++EK Sbjct: 935 WLDKKNFDKVIMNLLSNAFKFTPSKGNIGIRLKQ-GEHDVSMEVWDDGLTIEPDKMEKIF 993 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF-STPAKGTLIEIIFPL 810 + F Q N G+G+GL L K +V + G+ ++ +T KG +++ PL Sbjct: 994 QRFYQADNITNYNVAGSGIGLNLTKQLVTLHHGEISVYNNTDGKGCTFKVVLPL 1047 >gi|290960529|ref|YP_003491711.1| sensor kinase [Streptomyces scabiei 87.22] gi|260650055|emb|CBG73171.1| putative sensor kinase [Streptomyces scabiei 87.22] Length = 1391 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/266 (28%), Positives = 143/266 (53%), Gaps = 14/266 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E ++ +L + S +KS+FLA +SHE+RTPL +++ + ++ + G L + Sbjct: 919 AELRRSNAELEEKAALLATSSQYKSEFLANMSHELRTPLNSLLILARLLSDNPDGHLTD- 977 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + +++A I RSG+ +L ++ND+LD+SKIE+G+M++ + + L + + + + + Sbjct: 978 QEVQFATTIHRSGSDLLQLINDILDLSKIEAGRMDVRPKRLPLIKLLDYVHATFRPLTLD 1037 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST----------T 730 + + + N+PR + +D + ++QI N+LSNAI FT S G++ ++ T Sbjct: 1038 RGLAFEVAVGENVPREMYSDEQRLQQILRNLLSNAIKFTAS-GRVELAVNRVKDPDHRFT 1096 Query: 731 HTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 ++EVI V DTG+G+ +L + F Q + + GTGLGL +++ + Sbjct: 1097 REHHDEVIAFAVSDTGIGIAAEKLPVIFEAFQQADGTTNRKYGGTGLGLSISREIAGLLG 1156 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSH 815 G+ S P KG+ + P+ H Sbjct: 1157 GRIIAESVPGKGSTFTLYVPVLSPGH 1182 >gi|1754642|dbj|BAA14000.1| adenylate cyclase [Anabaena sp.] Length = 1155 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 114/221 (51%), Gaps = 11/221 (4%) Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN--LVLDIV 641 K++F +SHE RTP+T I G E +G + YA N +L +V Sbjct: 514 QKTEFFQNISHEFRTPITLIQGPLE-------SAVGTGEGLSYAQSAIALCNSRRLLRLV 566 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 N LLD+ ++++G+M F P L + VS+ + + Y EK+ L T+ + P + D+ Sbjct: 567 NQLLDLQRLDAGRMQPSFRPCDLVDFVSQIVESFRPYC-EKKALHLTTELDECPTVYIDM 625 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 ++ N+LSNA+ FTP GG I + + IL+V+DTG+G+ ++ + F Sbjct: 626 EKFDKVVYNLLSNAMKFTPEGGTISVKL-QSQGHHCILQVQDTGIGIVKEQIPHLFERFR 684 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 Q S+ EG+GLGL L K +V+ + G+ + S KGT Sbjct: 685 QAEGSENRSYEGSGLGLALVKELVELHGGRVTVDSVYGKGT 725 >gi|148545406|ref|YP_001265508.1| multi-sensor signal transduction histidine kinase [Pseudomonas putida F1] gi|148509464|gb|ABQ76324.1| Alginate biosynthesis sensor protein KinB [Pseudomonas putida F1] Length = 593 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 95/368 (25%), Positives = 171/368 (46%), Gaps = 41/368 (11%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-------PVEDILRKPFTVFLEQNT 505 +L ++L++ DG+ II+R+G + N + G+ + + L++P LEQ Sbjct: 257 RLQAVLDSIDDGLLIIDRQGRLEHLNPVAQRQLGWNDSRVGSSLVEALQRPE---LEQQL 313 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISE 563 V+ SLD + + + + E +LL+ + P M HD++E Sbjct: 314 RQVLRGG-----SLD--RPPDDLNMEVDDESRLLTYSLTPVSHPQGPILGAVMVLHDVTE 366 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI-IGFSEVIKNQRFGPLGNPR 622 + + +S+F+ R SHE+RTP+T + + F + + +F P R Sbjct: 367 QRAFERV--------------RSEFVLRASHELRTPVTGMHMAFGLLRERVKFPP--EAR 410 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + I + ++NDLL+ S+ +SG L P ++D+ + A +A K Sbjct: 411 ENDLLETIGEEMQRLTQLINDLLNFSRYQSGLQKLELAPCAIDDLLEHAQLRFAEHAAHK 470 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 +I + +PRI AD+ + ++ N+L NAI T +GG+I + + E VI+ V Sbjct: 471 QIELIKELDPPLPRIQADVAQLDRVLDNLLHNAIRHTANGGRIRLHARRHA-ERVIISVE 529 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D G G++ + + +PF Q+ + G GLGL L K +V + G+ +FS P +GT Sbjct: 530 DNGEGISYGQQARIFEPFVQVGRKK----GGAGLGLALCKEIVQLHGGRMGVFSRPGQGT 585 Query: 803 LIEIIFPL 810 + P+ Sbjct: 586 QFYMALPV 593 >gi|319651394|ref|ZP_08005523.1| sensor protein [Bacillus sp. 2_A_57_CT2] gi|317396925|gb|EFV77634.1| sensor protein [Bacillus sp. 2_A_57_CT2] Length = 594 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 103/375 (27%), Positives = 171/375 (45%), Gaps = 36/375 (9%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN----RAVSKLFGYPVEDILRKP 496 + N + E QL SIL +DG+ NR+G IL TN R + F Y ++DI Sbjct: 246 KFNMNALSQEKEQLASILSGMADGVITFNRDGTILITNPPAERFLQSWF-YELDDI---- 300 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 E NT V + + E+ L + E+I S + S II+ L + Sbjct: 301 -----ENNTEEVPSKVM-ELFQLAVNTEKEQIGEISIQGR---SWVIIVSPLYNNKYIRG 351 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + I + +E+ K ++DF+A VSHE+RTP++ + G+SE I + G Sbjct: 352 AVAVIRDMTEER-----------KLDKLRNDFIANVSHELRTPISMMQGYSEAIVDDIAG 400 Query: 617 PLGNPRYIEYANYID--RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 + + Y + R G LV N+LLD++++E+G + L E ++ + I Sbjct: 401 TDEEKKEMASVIYDESLRMGRLV----NELLDLARMEAGHIQLTMEETEVNSYLQRIIRK 456 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 Q A EK I + + I D ++Q+ N++ NAI TP G++ + + Sbjct: 457 FQGLAKEKEISLEHDLQSKGVPIQIDPDRIEQVMTNLIDNAIRHTPQNGEVKV-LERSDE 515 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + + VRD+G G+ +L + F + ++ GTGLGL +AK +++A+ G + Sbjct: 516 RGLFIEVRDSGSGIPEEDLPFVFERFYKADKARTRGRSGTGLGLAIAKNIIEAHKGHITV 575 Query: 795 FSTPAKGTLIEIIFP 809 S GT I P Sbjct: 576 QSKTGHGTTFSIFIP 590 >gi|295083983|emb|CBK65506.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 660 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 130/252 (51%), Gaps = 24/252 (9%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL-GNPRYIEYAN 628 +L AK+ AE+ + KS F++ +SHEIRTPL AI+GFS +I G + N EYA+ Sbjct: 419 ELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLI----IGSVEQNDELKEYAD 474 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL--- 685 + + NL+L +++D+LDIS++ESGK+ ++E L I+L N + + Sbjct: 475 IVQTNSNLLLQLISDVLDISRLESGKLQFNYEWCELVNHCQNMITL----TNRNKTVDVD 530 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL-RVRDT 744 I+ + D ++QI +N+L+NA+ FTP+GG I + ++ +L V DT Sbjct: 531 IKLQMPKEPYMLYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVDEEKQCMLFSVTDT 590 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G G+ + E + F ++ Q GTGLGL + K + G +I + G Sbjct: 591 GTGIPEDKQELVFQRFEKLNEFVQ----GTGLGLAICKLTIQYMGGDIWIDKSYKNGA-- 644 Query: 805 EIIFPLYDTSHP 816 IF SHP Sbjct: 645 RFIF-----SHP 651 >gi|237719541|ref|ZP_04550022.1| two-component sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229451401|gb|EEO57192.1| two-component sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 660 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/247 (33%), Positives = 129/247 (52%), Gaps = 28/247 (11%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL-GNPRYIEYAN 628 +L AK+ AE+ + KS F++ +SHEIRTPL AI+GFS +I G + N EYA+ Sbjct: 419 ELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLI----IGSVEQNNELKEYAD 474 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL--- 685 + + NL+L +++D+LDIS++ESGK+ ++E L I+L N + + Sbjct: 475 IVQTNSNLLLQLISDVLDISRLESGKLQFNYEWCELVNHCQNMITL----TNRNKTMDVD 530 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL-RVRDT 744 I+ + D ++QI +N+L+NA+ FTP+GG I + ++ +L V DT Sbjct: 531 IKLQMPKEPYMLYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVDEKKQCMLFSVTDT 590 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK---------AMVDANM--GKFY 793 G G+ + E + F ++ Q GTGLGL + K +D N G + Sbjct: 591 GTGIPEDKQELVFQRFEKLNEFVQ----GTGLGLAICKLTIQYMGGDIWIDKNYKNGARF 646 Query: 794 IFSTPAK 800 IFS P K Sbjct: 647 IFSHPIK 653 >gi|163801557|ref|ZP_02195455.1| putative sensory box sensor histidine kinase/response regulator VieS [Vibrio sp. AND4] gi|159174474|gb|EDP59276.1| putative sensory box sensor histidine kinase/response regulator VieS [Vibrio sp. AND4] Length = 1235 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/256 (32%), Positives = 138/256 (53%), Gaps = 11/256 (4%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DI+E ++ + L A++ A+ + FLA +SHE+RTPL+A G +++ Q Sbjct: 660 IQDITEQQERELALIVAQERAQTAVRARESFLATMSHELRTPLSAAHGLLDLLTRQ--AD 717 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD--EAVSEAISLV 675 GN + E RS N + +V+++LD SK+E+G+ L P+ D + + + Sbjct: 718 SGNSK--ELITQAMRSLNHLNLLVDEVLDYSKLEAGQ--LKVTPIQTDVLTTLCDVVRSF 773 Query: 676 QLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 + A K + R F N P + D + QIA N+LSNA+ FT S G+I +S S Sbjct: 774 EPKAVSKGLDYRVLFKPFNTPWLKVDPVRLVQIATNLLSNAVKFT-SDGEINVSVA-LSE 831 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 ++IL+V DTG+GM++ +LE ++PF Q ++ + GTGLGL + +V G+ YI Sbjct: 832 RKLILKVADTGIGMSDTQLEGILQPFVQADDTITRKYGGTGLGLSIVDRLVKCMGGELYI 891 Query: 795 FSTPAKGTLIEIIFPL 810 S GT + + P+ Sbjct: 892 DSQLGLGTTMLVKLPI 907 >gi|114799174|ref|YP_759273.1| sensor histidine kinase/response regulator [Hyphomonas neptunium ATCC 15444] gi|114739348|gb|ABI77473.1| sensor histidine kinase/response regulator [Hyphomonas neptunium ATCC 15444] Length = 543 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 132/254 (51%), Gaps = 13/254 (5%) Query: 566 QEKNKLSHAKKIAEKES------SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 + +N+ + ++I E ++ +S FLA + HEIRTPLT I+G ++++K+Q Sbjct: 141 RARNQQASQRRIEEMKARMVSLVEGRSRFLAFIGHEIRTPLTGILGVADLLKDQSV---- 196 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 A I SG + ++NDLLD+S++E+GK+ + +P L + SE L Q Sbjct: 197 TNESRRLAETISNSGQHLERLLNDLLDLSRLEAGKLPVTMQPFELRQFASETRDLWQPKL 256 Query: 680 NEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--E 736 + KR+ +R + A + RI +D ++QI N++SNA+ FT G + +T + E Sbjct: 257 DAKRVGLRIAVARSAEARIESDAGRLRQILFNLVSNAVKFTDRGHVTVQMSTVPAGEGLS 316 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +++ V DTG G+++ + + + F Q + G+GLGL +A+A+ G + Sbjct: 317 LVMTVADTGRGISDADKARLFEEFEQADETTATTHGGSGLGLSIARALTRRLGGDIMLAD 376 Query: 797 TPAKGTLIEIIFPL 810 G L + P+ Sbjct: 377 NAGGGCLFTVTVPV 390 >gi|262393360|ref|YP_003285214.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp. Ex25] gi|262336954|gb|ACY50749.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp. Ex25] Length = 1111 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 88/317 (27%), Positives = 151/317 (47%), Gaps = 18/317 (5%) Query: 508 VMNHYLTEILS---LDLRQTLEKITLGSTKEEKLLSLR---IIIKKLPFSSCYSLTMHDI 561 + +HYL+ ++ L L EK++ G + ++R I L F I Sbjct: 353 IASHYLSNFITSPLLKLTWAAEKVSAGDLDDTTFNTVRKDEIGRLALSFERMQRSIREKI 412 Query: 562 SEWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 K++ +L +I +K++ K +FLA SHE+RTPL ++G +E + + Sbjct: 413 QTIKKQNEELESNIQIIQKQNDELQLADKLKDEFLATTSHELRTPLHGMVGIAETLASGA 472 Query: 615 FGPLGNPRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + P +Y + I +SG + ++V+DLLD K+ G M++ VSL A + Sbjct: 473 NGAI--PASQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLE 530 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 L K I I ++ + AD + ++Q+ N++ NAI +T S G+I+IS + Sbjct: 531 LSSHLLGNKTIRIINQVPADLKVVSADPQRLEQVLYNLIGNAIKYT-SEGKIVIS-ANVV 588 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ V ++V DTG G+ LE +P Q +G GLGL +++ +++ G Y Sbjct: 589 DDHVRVQVVDTGQGIPAEHLEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLY 648 Query: 794 IFSTPAKGTLIEIIFPL 810 + S P GT PL Sbjct: 649 VSSQPMVGTTFSFTLPL 665 >gi|148264044|ref|YP_001230750.1| heavy metal sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146397544|gb|ABQ26177.1| heavy metal sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 489 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 93/305 (30%), Positives = 153/305 (50%), Gaps = 21/305 (6%) Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKL-PFSSCYSLTMH----------DISEWKQEK 568 D R+ L + + T +L+ I+ K L P + TMH ++ W +E Sbjct: 183 DFREVLLAVIIFGTIISAVLAAIIVRKGLRPLNEITERTMHISAYNLDERMNMPHWPKEV 242 Query: 569 NKLSHA--KKIAEKESSHK--SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 L+ A + + S S +++ ++HE+RTP+ ++G +EV + R I Sbjct: 243 KTLAIAFDDMLDRLQDSFDRLSSYVSNMAHELRTPINVLMGEAEVALTKARSSSDYRRVI 302 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E + ++ G L I++ LL I++ + K L E + + + V + + Q A++K + Sbjct: 303 E--SNLEEYGRLS-RIIDSLLFIARTDIRKSTLLREEIIVSQEVKKIVEYYQPLADDKEL 359 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 I ++ N + AD ++ N+LSNAIH+T SGG+I IST N + + V DT Sbjct: 360 SI--TWTGN-ATLSADPTLFRRAISNLLSNAIHYTTSGGRIEISTRQADNLSIEVTVADT 416 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G GM EL K F +I S+ + EGTGLGL + K+++D + G I S P+KGT I Sbjct: 417 GCGMCKEELPKIFDRFYRIDASRHVHPEGTGLGLAIVKSIMDLHGGTVSIESEPSKGTSI 476 Query: 805 EIIFP 809 + FP Sbjct: 477 TLKFP 481 >gi|298481097|ref|ZP_06999291.1| two-component sensor histidine kinase [Bacteroides sp. D22] gi|298272671|gb|EFI14238.1| two-component sensor histidine kinase [Bacteroides sp. D22] Length = 660 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 130/252 (51%), Gaps = 24/252 (9%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL-GNPRYIEYAN 628 +L AK+ AE+ + KS F++ +SHEIRTPL AI+GFS +I G + N EYA+ Sbjct: 419 ELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLI----IGSVEQNDELKEYAD 474 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL--- 685 + + NL+L +++D+LDIS++ESGK+ ++E L I+L N + + Sbjct: 475 IVQTNSNLLLQLISDVLDISRLESGKLQFNYEWCELVNHCQNMITL----TNRNKTVDVD 530 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL-RVRDT 744 I+ + D ++QI +N+L+NA+ FTP+GG I + ++ +L V DT Sbjct: 531 IKLQMPKEPYMLYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVDEEKQCMLFSVTDT 590 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G G+ + E + F ++ Q GTGLGL + K + G +I + G Sbjct: 591 GTGIPEDKQELVFQRFEKLNEFVQ----GTGLGLAICKLTIQYMGGDIWIDKSYKNGA-- 644 Query: 805 EIIFPLYDTSHP 816 IF SHP Sbjct: 645 RFIF-----SHP 651 >gi|259416722|ref|ZP_05740642.1| GAF sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] gi|259348161|gb|EEW59938.1| GAF sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] Length = 589 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/257 (30%), Positives = 129/257 (50%), Gaps = 5/257 (1%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+ K+ ++ + A+ A++++ + LA +SHEIRTPL IIG +++ Sbjct: 178 ALDDLIALKRARDVAADAEARAQQDAEARKTHLAHMSHEIRTPLNGIIGSVDLLMRGASS 237 Query: 617 PLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + R + I+RS + ++ND LDI+KI++GK+ L L E V++A+ L Sbjct: 238 LNADLREQNDLLRTINRSAQSLQRLLNDALDIAKIDAGKLELAPAAFDLREVVNDAVKLF 297 Query: 676 QLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 A++K + + SF + D + QI N+LSNAI FT G + H + Sbjct: 298 SAQASQKGVDLTHSFREIDAKEWRYGDQFRLSQILGNLLSNAIKFTDQG--TVGLHLHGT 355 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + + L +RD+G G+ L+K PF Q GTGLGL + MV+ G+ Sbjct: 356 PDALHLTLRDSGCGIAPERLDKLFLPFTQASAHVAHEKGGTGLGLTIVHQMVELMQGRIR 415 Query: 794 IFSTPAKGTLIEIIFPL 810 STP +GT+ + PL Sbjct: 416 AESTPGEGTIFHLYLPL 432 >gi|255014099|ref|ZP_05286225.1| two-component hybrid sensor kinase/response regulator [Bacteroides sp. 2_1_7] Length = 791 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/274 (29%), Positives = 147/274 (53%), Gaps = 22/274 (8%) Query: 546 KKLPFS------SCYSLTMHDISEWKQEKNK---LSHAKKIAEKESSHKSDFLARVSHEI 596 KK+ FS + + +T DI+E K+E+ + L A + A + K+DFL+R+SH+I Sbjct: 237 KKMRFSYYDREKNIWLMTRTDITEIKEERKQKKLLQEALQSANAANRAKTDFLSRMSHDI 296 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTP+ AI+G + + + R + I S L+L+++N++LD+SK+ES K+ Sbjct: 297 RTPINAIVGMTAIAGLHMDDQM---RIADCLKKITISSKLLLNLINEVLDMSKLESDKIM 353 Query: 657 LHFEPVSLDEAVSEAISLVQ--LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714 L E ++E + +VQ A +++ I + + ++ D++ ++Q LN+L+N Sbjct: 354 LTEEAFKINELLESLFVMVQPAFEAKKQKFQIHVTKIKH-ECLIGDVQRIQQALLNMLTN 412 Query: 715 AIHFTPSGGQIIIS-----TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 AI +TP GQI ++ + + + + V D G+GM LEK +PF + + + I Sbjct: 413 AIKYTPEDGQIQLTVEEKPSVYNGYGQFEITVTDNGIGMKPEFLEKVFEPFER-SDDKAI 471 Query: 770 RG-EGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 R +GTGLG+ +++ + G + S KG+ Sbjct: 472 RNIQGTGLGMAISRHIAQIMNGDILVESEYGKGS 505 >gi|114769184|ref|ZP_01446810.1| sensory box histidine kinase/response regulator [alpha proteobacterium HTCC2255] gi|114550101|gb|EAU52982.1| sensory box histidine kinase/response regulator [alpha proteobacterium HTCC2255] Length = 843 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 131/262 (50%), Gaps = 7/262 (2%) Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + Y + DIS+ K + L A+ AE+ KS FLA +SHE+RTPL IIG +++K Sbjct: 322 AIYMAYIRDISDRKVAEKILIEARDRAERTDKAKSQFLAVMSHEMRTPLAGIIGVMDLLK 381 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 Y++ A SG ++L+ +N+ LDI++IE G L + +L + Sbjct: 382 ATNLSK-KQDHYVQIAT---SSGEVMLEHINEALDITRIEGGAFELSPQEFNLPDLARSL 437 Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIIST 729 + +++ ANEK + + +NI L D ++QI N+L N+I FT G Q +IS Sbjct: 438 VEVLKPLANEKELSLELQIDDNIKAYFLGDSHRIRQILTNLLGNSIKFTDEGSIQFVISC 497 Query: 730 THTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 +H ++ + + DTG+G+ EK + F I + + + G GLGL +++ + Sbjct: 498 SHEADVSRLKFTITDTGLGIAPENHEKIFEDFVAISSGDERQSRGDGLGLSISRKIARQM 557 Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810 G + S +G + PL Sbjct: 558 GGDIIVESNINEGATFILNLPL 579 >gi|186682409|ref|YP_001865605.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186464861|gb|ACC80662.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1080 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 121/234 (51%), Gaps = 7/234 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA-NYIDRSGNLVLDIVND 643 K +FLA +SHE+RTPL I+G+++++++ PL + ++ + I+R+ + +V D Sbjct: 715 KDEFLAVLSHELRTPLNPILGWAKLLQS----PLVSSDKLQQGLSAIERNAKQQVQLVED 770 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 LLDIS+I GK+ L F + L E ++ A+ V+L A K I + ++ ++ D Sbjct: 771 LLDISRIIRGKLTLSFGAIDLSEPIAAALETVRLAAEAKAIQLEVLLDPSVGQVRGDADR 830 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 ++Q+ N+LSNAI F +GG + + T I +V DTG G+ L + F Q Sbjct: 831 LQQVVWNLLSNAIKFNSTGGWVTVQLTSVDRHAQI-QVSDTGKGIQPEFLPHVFELFQQQ 889 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTSHP 816 +S G GLGL +A+ +V+A+ G S G + PL P Sbjct: 890 DSSSTRSFGGLGLGLAIARQVVEAHGGTITAVSAGEGLGATFTVQLPLMPVPSP 943 >gi|320160199|ref|YP_004173423.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319994052|dbj|BAJ62823.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 467 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/251 (30%), Positives = 136/251 (54%), Gaps = 11/251 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I + Q N +S ++IA + + + A ++H++RTPLT I G+ E +++ P Sbjct: 224 EIGQLAQAFNLMS--QQIA-RANQLRRQMTADIAHDLRTPLTVIAGYIESMRDGVLQP-- 278 Query: 620 NPRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P+ ++ I+R + +VNDL +S+ ++G++NLH +P + A L Q + Sbjct: 279 TPQRLDLIYQEIER----LQKMVNDLRMLSQADAGELNLHPQPTQPLALLKRAAHLFQHH 334 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A + I ++ + +P IL D + Q+ N++SNA+ +T +GG+I + ++V Sbjct: 335 AEQAGINLKVEASETLPAILVDEDRMMQVLDNLISNALRYTSAGGEITLRAKQ-DGKQVR 393 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 L+V DTG G+ + EL + + F ++ S+ G+GLGL + +A+V+A GK S Sbjct: 394 LQVADTGTGIPSEELPRIFERFHRVDPSRHSESGGSGLGLAIVRALVEAQGGKVSAESEL 453 Query: 799 AKGTLIEIIFP 809 KGT I FP Sbjct: 454 GKGTTITTEFP 464 >gi|118397307|ref|XP_001030987.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain containing protein [Tetrahymena thermophila] gi|89285307|gb|EAR83324.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain containing protein [Tetrahymena thermophila SB210] Length = 1751 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 87/325 (26%), Positives = 157/325 (48%), Gaps = 38/325 (11%) Query: 475 LSTNRAVSKLFGYPVED----ILRKPFTVFLEQ--NTPSVMNHYLTEILSLDLRQTLEKI 528 LS+N K G +D + +K +++Q N ++ YL E L + + ++ Sbjct: 991 LSSNNTCKKKQGDDAKDFDELLKQKQQLGYIQQEGNVSTMQIEYLGEQYILKI--IIHQV 1048 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 +GS+ E++ +++ I+++K+ W+ K E K Sbjct: 1049 IVGSSGEQQKVAM-IVMEKM---------------WQ------DFMIKKVEDLIKQKMQL 1086 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID---RSGNLVLDIVNDLL 645 +SHE+RTPL I EV++N + NYI S L+L+++ND+L Sbjct: 1087 FGSLSHELRTPLNCSISMMEVLQN--IAQSEQNHQSQLLNYIQPALNSNKLLLNMINDIL 1144 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSV 704 D ++E+G + L + E +SLVQ+ A K + I F P+I+ +D + Sbjct: 1145 DFVQLENGSFKFGYVEFDLQNLLKECVSLVQIQAKMKNLTIACYFDPQTPKIIKSDPNRI 1204 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +Q+ LN LSNA+ FT +G I+ ++ H +EV + V+DTG+G+ + + K F +I Sbjct: 1205 RQVILNFLSNALKFTIAGHIIVYASAHKGIQEVTIGVKDTGIGINQENINEIFKIFNKID 1264 Query: 765 --NSQQIRGEGTGLGLPLAKAMVDA 787 N+ ++ +G G+GL L+ ++ A Sbjct: 1265 LGNNSKLNLQGCGVGLALSNSIARA 1289 >gi|325694847|gb|EGD36752.1| sensor histidine kinase VicK [Streptococcus sanguinis SK150] gi|327461011|gb|EGF07344.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1057] Length = 449 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 96/377 (25%), Positives = 174/377 (46%), Gaps = 35/377 (9%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R+ +E E +L SIL +DG+ NR G I++ N +K G +++ Sbjct: 83 RLTHENLEQETKRLSSILSYMTDGVLATNRRGQIITINDMATKQLGVKRDEVQNMSILDL 142 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRI----IIKKLPFSSCYS 555 L S+ + Y DL + ++T+ S E + LSLR+ + ++ F S Sbjct: 143 L-----SISDEYDLR----DLITNVPELTIDSQDENGEYLSLRVRFALVRRESGFISGLV 193 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +HD +E +KE + F++ VSHE+RTPLT++ + E + Sbjct: 194 AVLHDTTE--------------QDKEERERRLFVSNVSHELRTPLTSVKSYLEALDE--- 236 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L P ++ N ++ +V DLL +S+I++ +L E + ++ ++ Sbjct: 237 GALSEPVAPDFVKVSLNETNRMMRMVTDLLSLSRIDNETSHLEVELTNFTAFITFILNRF 296 Query: 676 QLYANE---KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 N+ K+ I + + D + Q+ NI++NAI ++P GG I +S T Sbjct: 297 DKIKNQDETKKYEIIRDYPITPIWVEIDTDKLTQVIDNIMNNAIKYSPDGGTITVSI-KT 355 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++E++IL + D G+G+ +L K F ++ ++ GTGLGL +AK ++ + G Sbjct: 356 TDEQLILSIADEGLGIPKQDLPKIFDRFYRVDKARSRAQGGTGLGLAIAKEIIKQHQGFI 415 Query: 793 YIFSTPAKGTLIEIIFP 809 + S G+ I+ P Sbjct: 416 WAKSEYGVGSTFTIVLP 432 >gi|317152240|ref|YP_004120288.1| ATPase ATP-binding domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316942491|gb|ADU61542.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 507 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/258 (31%), Positives = 124/258 (48%), Gaps = 19/258 (7%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K AE S KSDFLA VSHEIRTP+ A++G +E + + PL + R +Y Sbjct: 221 ELEVARKAAEAASQAKSDFLAAVSHEIRTPMNAVLGMTEAVLHT---PL-DARQRDYVET 276 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 S +LD++ND+LD S+IE+G++ L E L V A+ V L A +K + + Sbjct: 277 ARESALHLLDVLNDILDFSRIEAGRLRLVSEDFDLPAVVHSAMKTVGLEAGQKGVALDFE 336 Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------------E 736 PR L D ++Q+ +N+L N + FT G + + Sbjct: 337 MMEGAPRFLRGDPGRLRQVLINLLGNGVKFTEQGAVRVTVGPWDGGQGGESPPDPERPVG 396 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V V D+G G+ + + F Q + R G+GLGL + + +V G+ + S Sbjct: 397 VRFSVSDSGPGIPPEFGQAIFEAFRQGDGTTSRRYGGSGLGLAICRDLVRLMGGEITVRS 456 Query: 797 TPAKGTLIEIIFPLYDTS 814 T +G+ E I LY + Sbjct: 457 TVGRGS--EFILGLYQIT 472 >gi|253565390|ref|ZP_04842845.1| two-component system histidine kinase [Bacteroides sp. 3_2_5] gi|251945669|gb|EES86076.1| two-component system histidine kinase [Bacteroides sp. 3_2_5] Length = 511 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/256 (32%), Positives = 128/256 (50%), Gaps = 14/256 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H I E K ++KL A+ A++ KS FLA +SHEIRTPL AI+GFS +I L Sbjct: 261 HSIQEHKNTEDKLRAARNKAQESDRLKSAFLANMSHEIRTPLNAIVGFSNLIAGG-IVDL 319 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 +Y+ I ++ N +L +V+D+LD+S IES M F L ++E + Q Y Sbjct: 320 DTEEARDYSALISKNCNYLLTLVSDVLDLSCIESDTMTFKFTIYPLTRLLTE---IYQKY 376 Query: 679 ANEKRILIRTSFANNIP----RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 N RI F +P I D ++Q+ ++L NA FT G I Sbjct: 377 EN--RIPQEVQFNLLLPTDNVEIETDAVRLRQVIEHLLDNAAKFTVKGHIDIGYALSDHG 434 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E++ + V DTG G+ + + +K + F +I + Q G GLGL + K +V+ G + Sbjct: 435 EKIYVFVADTGCGIPSDQYKKVFERFYKINSFVQ----GAGLGLSVCKTIVEGLGGTINV 490 Query: 795 FSTPAKGTLIEIIFPL 810 +S +G+ +I PL Sbjct: 491 YSQLKEGSRFSVILPL 506 >gi|239904878|ref|YP_002951616.1| two-component sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239794741|dbj|BAH73730.1| two-component sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 404 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/263 (30%), Positives = 131/263 (49%), Gaps = 26/263 (9%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR-VSHEIRTPLTAIIGFSEVIKNQRFGP 617 D+S K+ + K A+K+A LA V+HE+ PLTAI GF+E ++ +R Sbjct: 151 RDVSREKEYQAKFYQAEKMA------TIGMLATGVAHEVNNPLTAIFGFAEGLR-RRLPA 203 Query: 618 LG---NPRYIE----YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 L +PR +E Y I R DIV LL S+ + + F VSL+ V++ Sbjct: 204 LKEKVDPRVMEDVEDYVATILRECRRCQDIVTTLLTFSR----QKTVSFSAVSLNAVVND 259 Query: 671 AISLVQLY---ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 + L++ + N+ +I +R + N+P + D +KQ+ LN+L NA+ G+III Sbjct: 260 TLKLLRSHLKQRNQAKITVRVDLSENLPMVHGDEHQIKQVMLNLLVNAMDAITGPGRIII 319 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 +T +S V L V D+G G+ ++K +PF S G+G G+GL ++V Sbjct: 320 TTYQSSKGAVCLSVEDSGCGVPPENVDKLFEPFFTTKRS----GKGIGIGLSTCMSIVKK 375 Query: 788 NMGKFYIFSTPAKGTLIEIIFPL 810 + G + STP +G + P+ Sbjct: 376 HQGDITLKSTPGQGATFTVSLPV 398 >gi|13242537|ref|NP_077550.1| EsV-1-65 [Ectocarpus siliculosus virus 1] gi|13177344|gb|AAK14488.1|AF204951_65 EsV-1-65 [Ectocarpus siliculosus virus 1] Length = 767 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 124/246 (50%), Gaps = 28/246 (11%) Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 KES KS F+A +SHEIRTP+ I+G +E++++Q NP EY + I G +L Sbjct: 330 KESKFKSRFIADMSHEIRTPMNGIMGSAELLRDQDL----NPVCTEYVSMISSCGTSLLT 385 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL-------YANEKRILIRTSFAN 692 I++D+LD+SKI++ MN+ + ++ + +A+ + N + + S A Sbjct: 386 IIDDVLDMSKIQANMMNIENKQMNTNGTFHDAVHATWAGYTRSPHFKNSVCLNLEISPAA 445 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR----DTGVGM 748 + +D ++QI N++SNA+ FT +G + E +R DTG+GM Sbjct: 446 TASEVASDSTRIRQIVCNLVSNALKFTDNGSVSVSVDVENGPGEGTAYIRASVTDTGIGM 505 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-----------DANMGKFYIFST 797 + ++K +PF Q+ + + GTGLGL + + +V A +G + F Sbjct: 506 SESAMKKLFQPFSQVHRGRDVG--GTGLGLVITQQLVTLMGGKISCDSKAGLGTKFTFCV 563 Query: 798 PAKGTL 803 AKGT+ Sbjct: 564 LAKGTV 569 >gi|291568228|dbj|BAI90500.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 1336 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/264 (29%), Positives = 133/264 (50%), Gaps = 11/264 (4%) Query: 557 TMHDISEWKQ-EKNKLSHAKKIAEKESSHK------SDFLARVSHEIRTPLTAIIGFSEV 609 DI++ +Q E + + K++ EK + K +FLA SHE+RTPL +IG SE Sbjct: 556 VFEDITQRRQAEMERQNFTKQLKEKNDALKRMDELKDEFLANTSHELRTPLNGMIGLSES 615 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + GPL + + + I +SG+ + +VND+LD SK+ + L +P+ L E V Sbjct: 616 MLDGVGGPLTELQR-QNLSMIAKSGHRLSTLVNDILDFSKLRHQTLELKLQPLGLREIVE 674 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 + L + K I + + P + AD ++QI N++ NAI FT SG I ++ Sbjct: 675 VIVVLSKPLIGNKDIELINEIPADFPAVNADENRLQQILYNLIGNAIKFTDSGTVKITAS 734 Query: 730 ---THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 T ++ ++ + DTG+G+ + + + F Q S + GTGLGL + K +V+ Sbjct: 735 VLDTEVNHSTAVINIYDTGIGIPPDKHHRIFESFEQGDGSTARQYGGTGLGLAITKQLVE 794 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPL 810 + GK ++ S G+ P+ Sbjct: 795 LHQGKIWLDSVVDSGSTFSFTLPI 818 >gi|238756866|ref|ZP_04618054.1| PAS/PAC domain [Yersinia aldovae ATCC 35236] gi|238704696|gb|EEP97225.1| PAS/PAC domain [Yersinia aldovae ATCC 35236] Length = 1334 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 134/263 (50%), Gaps = 10/263 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI++ ++ +N L A++ AE+ + KS FLA +SHE+RTP+ AI+G +++ Sbjct: 557 RDITQQREAENILQSARQAAEEANKAKSAFLANMSHELRTPMNAILGMLTLLRKTGL--- 613 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N + +YA + + +L ++ND+LD SKIE+GKM L P + + + ++ Sbjct: 614 -NNKQADYAVKSEAATRTLLRLLNDILDFSKIEAGKMVLECIPFDIHVMLRDLAVILSSN 672 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEE 736 K++ + +P+ + D ++QI N+ NA+ FT G ++ I +++ Sbjct: 673 LKIKKVEVLFDIDPTLPQFVEGDSMRLQQILTNLGGNALKFTEQGEVVLFIKVLKQDSQQ 732 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V L VRDTG+G+ E F Q S R GTGLGL +++ V G+ + Sbjct: 733 VTLHFGVRDTGIGIAPEHQESIFGGFTQAEASTTRRFGGTGLGLVISQRFVALMGGRLEL 792 Query: 795 FSTPAKGTLIE--IIFPLYDTSH 815 S P +G+L I PL S+ Sbjct: 793 ESQPGQGSLFHFTITLPLSSPSN 815 >gi|166712335|ref|ZP_02243542.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 1131 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 123/241 (51%), Gaps = 10/241 (4%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP--LGNPRYIEYANYID 631 A+ AE S K +FLA +SHE+RTPL AI+G+S++++++ P LG I I+ Sbjct: 736 ARAQAEHASRVKDEFLATLSHELRTPLNAILGWSQLMQSEMTEPTHLGRGLVI-----IE 790 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF- 690 RS I++DLLD+S I SGK+ L E + V + L+Q A + I + Sbjct: 791 RSARAQTQIIDDLLDMSVILSGKIRLQAERFDIAGLVRSTLELMQPTALAREIALELDAP 850 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + D ++Q+ N+LSNA+ FTP+GG + ++ +E + L V+DTG+G+ Sbjct: 851 CDGELWFFGDAGRLQQVLTNLLSNALKFTPAGGTVRVAMD-IEDERLRLCVQDTGIGIAA 909 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 L F Q R G GLGL +++ +VD + G S +G L I+ P Sbjct: 910 DFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGILDASSAGEGQGALFTIVLP 969 Query: 810 L 810 Sbjct: 970 F 970 >gi|144900532|emb|CAM77396.1| Signal transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 640 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 121/252 (48%), Gaps = 5/252 (1%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E K + L A+ AE+ + KS FLA V HEIRTPL I+G + ++ + PL + R Sbjct: 136 ERKNAEQALREARDKAEEAAQVKSLFLATVGHEIRTPLNGILGMARLLLDT---PL-DQR 191 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +A + SG L+L +VND+LD S++E+ + L L V + L+ A +K Sbjct: 192 QKVFAETVVSSGELLLGLVNDILDFSRLEADGLTLETTSFDLLNMVEDIRLLMAPRAADK 251 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + + F + R + D ++Q+ LN++ NAI FT +G +I ++ V V Sbjct: 252 GLTLGCRFPPEVQRQVSGDPLRLRQVLLNLVGNAIKFTANGSVMIAVAKEEASGMVRFSV 311 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ + F Q +S R G GLGL + K +V G STP G Sbjct: 312 SDTGIGIPEEARDILFNEFSQADSSVARRYGGAGLGLAICKRLVTLMGGAIGFDSTPGSG 371 Query: 802 TLIEIIFPLYDT 813 T P D Sbjct: 372 TQFWFRIPFSDA 383 >gi|83643693|ref|YP_432128.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83631736|gb|ABC27703.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 1263 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 98/378 (25%), Positives = 173/378 (45%), Gaps = 11/378 (2%) Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + +R ++++E +L + + +++ + I N+EG N SK+ GY ++L +P Sbjct: 434 EAASRAARQQIEQSQKELQNFFDLSTNFLCIANKEGYFEKINFTFSKVLGYSERELLSEP 493 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDL-RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 F+ P L E+ L + L + ++++L P S + Sbjct: 494 IVHFIH---PDDAESTLQELNKLARGKPALSFVNRYRCYSGEVVTLLWSAACDPVSGKFY 550 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 T DI+ + + +L+ AK AE + KSDFLA +SHEIRTP+ ++G ++ + Sbjct: 551 ATAVDITAQRNAQLELTQAKDAAEAAARAKSDFLATMSHEIRTPMNGVLGMLNLVLQSKL 610 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + + S +L ++ND+LD SK+++GK+ L L + E + Sbjct: 611 ----DSEQLRKVKIAKSSAESLLSLINDILDFSKVDAGKLELELLDFDLRHHLDEFAGTM 666 Query: 676 QLYANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 L A EK + L+ A + D ++QI N++SNAI FT G +I Sbjct: 667 ALRAQEKDLELVLDQSAVEQSMVRGDPGRLRQILTNLVSNAIKFTAEGEIVIRCQLQPEG 726 Query: 735 EEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + ++L V DTG+G+ ++ PF Q+ S + GTGLGL + K + + G Sbjct: 727 DHLLLTVSVSDTGIGIPADKIGGLFDPFTQVDASTTRQFGGTGLGLAICKRLSELMEGGI 786 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S +G+ E L Sbjct: 787 TVHSEQGEGSCFEFCVRL 804 >gi|116750047|ref|YP_846734.1| multi-sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116699111|gb|ABK18299.1| multi-sensor signal transduction histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 610 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 124/229 (54%), Gaps = 4/229 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS ++ VSHE++TPLT++ + V+ +++ GPL NP+ +E + + I+ +L Sbjct: 381 KSGLISTVSHELKTPLTSVRLAAHVLLSEKLGPL-NPKQVEILVAAREDSDRLYQIIENL 439 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LDIS+IE+ + + PV ++ V +A ++ ++++ + ++P +LA+ + Sbjct: 440 LDISRIETDRSKIRLSPVDTEQMVLQATDEMRSAYMDRKVTLVLDLPEDVPPVLAEAFYL 499 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 + + N+LSNA+ TP+GG++ +S + V V DTG G+ L + F + P Sbjct: 500 ESVFANLLSNALRHTPAGGRVTVS-ARRKGDAVQFSVEDTGSGIPAESLPHVFEKFYRGP 558 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 ++ R +GLGL +A+ +V+A+ G + S P KG + D+ Sbjct: 559 GREERR--DSGLGLAIAREIVEAHGGTIGVVSEPGKGARFTFTLSVADS 605 >gi|296329975|ref|ZP_06872459.1| two-component sensor histidine kinase (YycF) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676700|ref|YP_003868372.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii str. W23] gi|296153014|gb|EFG93879.1| two-component sensor histidine kinase (YycF) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414944|gb|ADM40063.1| two-component sensor histidine kinase (paired with YycF) [Bacillus subtilis subsp. spizizenii str. W23] Length = 611 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 99/376 (26%), Positives = 170/376 (45%), Gaps = 49/376 (13%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E E +L S++ +DG+ NR G I+ N +L E L P T L Sbjct: 259 EGERRKLASVIAYMTDGVIATNRNGAIILLNSPALELLNVSRETALEMPITSLL-----G 313 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYSLTMHDISE 563 + +Y E DL + + + L ++++L LR+ I ++ ++D++E Sbjct: 314 IQENYTFE----DLVEQQDSMLLEIERDDELTVLRVNFSVIQREHGKIDGLIAVIYDVTE 369 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN--- 620 EK + +F+A VSHE+RTPLT + + E + G N Sbjct: 370 --------------QEKMDQERREFVANVSHELRTPLTTMRSYLEALAE---GAWENKDI 412 Query: 621 -PRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 PR++ N +R ++ +VNDLL +SK +S + E + + +S I ++ Sbjct: 413 APRFLMVTQNETER----MIRLVNDLLQLSKFDSKDYQFNREWIQIVRFMSLIIDRFEMT 468 Query: 679 ANEKRILIRTSFANNIPR----ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 + F N+P + D + Q+ NI+SNA+ ++P GG + S Sbjct: 469 KEQ-----HVEFIRNLPDRNLYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEE 523 Query: 735 EEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 EE++ + V+D G+G+ ++EK F ++ ++ + GTGLGL +A+ MV A+ G + Sbjct: 524 EELLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAREMVQAHGGDIW 583 Query: 794 IFSTPAKGTLIEIIFP 809 S KGT I P Sbjct: 584 ADSIEGKGTTITFTLP 599 >gi|265763669|ref|ZP_06092237.1| two-component system histidine kinase [Bacteroides sp. 2_1_16] gi|263256277|gb|EEZ27623.1| two-component system histidine kinase [Bacteroides sp. 2_1_16] Length = 511 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/256 (32%), Positives = 128/256 (50%), Gaps = 14/256 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H I E K ++KL A+ A++ KS FLA +SHEIRTPL AI+GFS +I L Sbjct: 261 HSIQEHKNTEDKLRAARNKAQESDRLKSAFLANMSHEIRTPLNAIVGFSNLIAGG-IVDL 319 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 +Y+ I ++ N +L +V+D+LD+S IES M F L ++E + Q Y Sbjct: 320 DTEEARDYSALISKNCNYLLTLVSDVLDLSCIESDTMTFKFTIYPLTRLLTE---IYQKY 376 Query: 679 ANEKRILIRTSFANNIP----RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 N RI F +P I D ++Q+ ++L NA FT G I Sbjct: 377 EN--RIPQEVQFNLLLPTDNVEIETDAVRLRQVIEHLLDNAAKFTVKGHIDIGYALSDHG 434 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E++ + V DTG G+ + + +K + F +I + Q G GLGL + K +V+ G + Sbjct: 435 EKIYVFVADTGCGIPSDQYKKVFERFYKINSFVQ----GAGLGLSVCKTIVEGLGGTINV 490 Query: 795 FSTPAKGTLIEIIFPL 810 +S +G+ +I PL Sbjct: 491 YSQLKEGSRFSVILPL 506 >gi|226310932|ref|YP_002770826.1| sporulation kinase [Brevibacillus brevis NBRC 100599] gi|226093880|dbj|BAH42322.1| sporulation kinase [Brevibacillus brevis NBRC 100599] Length = 470 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 93/370 (25%), Positives = 176/370 (47%), Gaps = 50/370 (13%) Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLE-QNTPSVMNHY 512 C +L+ + +G A I R G + N+A +L G ++++L PF F ++ P + Sbjct: 135 CRVLDISGEG-AFIFRAGELQYVNQAGMQLVGASGLDELLWYPFQSFFHPRDVPKIKGLI 193 Query: 513 LT------------EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 T E++ LD +T ++ S LS+ I+I+ D Sbjct: 194 RTLEEGETASPIEVELIRLDGSRTEVEVCGTSMTMLDKLSMYILIR-------------D 240 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E K+ + L +++K+A A ++HEIR PLT++ GF ++++ Sbjct: 241 ITERKRAQEFLQNSEKLA-----LVGQLAAGIAHEIRNPLTSLKGFVQLMQKD------G 289 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 R EY + + + IV++LL ++K + FE L ++ ++L++ A Sbjct: 290 MRKPEYFSIMSSELARIEMIVSELLVLAKPHTAV----FEARDLSNLITHVVTLLETEAI 345 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K+++I+ F + +P I D +KQ +N L N I T G+I+I ++ V++R Sbjct: 346 LKKVMIQVVFESEVPLIHCDENQLKQAFINFLKNGIEATAGNGEIVIR-LRCEDDRVVIR 404 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 D GVG+ +++ + + F + GTGLGL +++ +++ + G + STP Sbjct: 405 FEDNGVGIPAHQMARLGEAFFTTKET------GTGLGLMVSRKIIENHRGTLRLISTPGN 458 Query: 801 GTLIEIIFPL 810 GT +E+ P+ Sbjct: 459 GTAVEVCLPI 468 >gi|160886358|ref|ZP_02067361.1| hypothetical protein BACOVA_04368 [Bacteroides ovatus ATCC 8483] gi|260173508|ref|ZP_05759920.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|315921779|ref|ZP_07918019.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|156108243|gb|EDO09988.1| hypothetical protein BACOVA_04368 [Bacteroides ovatus ATCC 8483] gi|313695654|gb|EFS32489.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 660 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 133/256 (51%), Gaps = 14/256 (5%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + D++E + +L A+ AE+ KS FLA +SHEIRTPL AI+GFS+++ Sbjct: 265 IRVDDVTERQHMIGELEKARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMVTE- 323 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE-AISL 674 E+ I+ + L+L ++ND+LD+SKIE+G + L +E L +E A S+ Sbjct: 324 ---DQEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVELKYENFDLAVYFNELAASM 380 Query: 675 VQLYAN-EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + N + R++ + R+ D + QI N ++NAI +T G I Sbjct: 381 HRRVVNPQVRLVPVNPYETCTVRL--DKNRLAQILTNFVTNAIKYTSKG--TIEMGYEKI 436 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +E + L VRDTG+G+ + +K F ++ Q GTGLGL + KA+V+A G+ Sbjct: 437 DENIRLYVRDTGIGIPEDKKDKVFHRFEKLDEFAQ----GTGLGLSICKAIVEACRGEIG 492 Query: 794 IFSTPAKGTLIEIIFP 809 S KG+L + P Sbjct: 493 FESEFDKGSLFWAVLP 508 >gi|91772550|ref|YP_565242.1| Cache sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711565|gb|ABE51492.1| HATPase domain-containing external sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 633 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 125/241 (51%), Gaps = 2/241 (0%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 N L A K + K FL+ VSHE+RTPLT+I G+++ + ++ G + + Sbjct: 386 NDLEKANKELKSLDQMKDVFLSNVSHELRTPLTSIKGYTQNLYDESLGDINGSQKTSLET 445 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + R+ + + +V+ LL IS+ ++ + F+ + + +S I + E + I Sbjct: 446 VL-RNADRLRRLVDSLLYISQAQAEIIEYDFKECYIAKIISNTIMDTIMLVEENDLHIEK 504 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 +++P I AD + + NI+ NAI FTP GG II+ N + L V DTG+G+ Sbjct: 505 KIPSDLPTIEADEARLVDMLNNIVDNAIKFTPPGGMIILGVFDDENY-LHLTVSDTGIGI 563 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + K F QI +S + + GTGLGL + K +VDA+ G+ +I S P KGT + I Sbjct: 564 PKELIPNLFKKFYQIDSSIRRKYGGTGLGLYICKKIVDAHSGEIWIESEPHKGTTVHIRL 623 Query: 809 P 809 P Sbjct: 624 P 624 >gi|58581946|ref|YP_200962.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58426540|gb|AAW75577.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 1150 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 121/241 (50%), Gaps = 10/241 (4%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP--LGNPRYIEYANYID 631 A+ AE S K +FLA +SHE+RTPL AI+G+S +++++ P LG I I+ Sbjct: 755 ARAQAEHASRVKDEFLATLSHELRTPLNAILGWSRLMQSEMTEPTHLGRGLVI-----IE 809 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF- 690 RS I++DLLD+S I SGK+ L E + V + L+Q A + I + Sbjct: 810 RSARAQTQIIDDLLDMSAILSGKIRLQAEHFDIAGLVRSTLELMQPTALAREIALELDAP 869 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + D ++Q+ N+LSNA+ FTP GG + ++ +E + L V+DTG+G+ Sbjct: 870 CDGELWFFGDAGRLQQVLTNLLSNALKFTPVGGTVRVAMD-IEDERLRLCVQDTGIGIAA 928 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 L F Q R G GLGL +++ +VD + G S +G L I+ P Sbjct: 929 DFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEGQGALFTIVLP 988 Query: 810 L 810 Sbjct: 989 F 989 >gi|117923646|ref|YP_864263.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607402|gb|ABK42857.1| amino acid-binding domain sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 843 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 115/402 (28%), Positives = 189/402 (47%), Gaps = 39/402 (9%) Query: 436 EDVDTRINKRKMEIEVMQL----------CSILEATSDGIAIINREGIILSTNRAVSKLF 485 ++++ R+++R +EV +L + ++ DG G +L N A+ +LF Sbjct: 318 QELEQRVDERTQALEVSELRFRTLFHAALVPLFRSSLDG-------GRVLLANLALVELF 370 Query: 486 GYP-VEDI--LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 GY VE++ L P L+ +M + +IL D R + L + + Sbjct: 371 GYSSVEEMVTLHDP----LKSYADPLMREHFIDILVRDGRVECLDVELVRPDSSRFYA-E 425 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 I P + DI+ K+ ++ L AK+ AE+ + KS+FLA +SHEIRTPL Sbjct: 426 ISAIHYPEGGYLEGAIIDITHRKRTEHALIQAKQSAERANRAKSEFLATLSHEIRTPLNG 485 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 +IG ++ R + + E I RS NL+LD++ND+LD SKIE+G++ L P Sbjct: 486 MIGLLTALQASRL----DAKQQEQVGLISRSSNLLLDLLNDILDFSKIEAGELVLEQIPF 541 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPS 721 S + V + + + A K + +R IP L D ++QI LN+ +NAI FT Sbjct: 542 SPLQLVEDVCACLSERAQGKGVGLRLETHGWIPPGLKGDAVRIRQIMLNLTNNAIKFTQQ 601 Query: 722 GGQIIISTTHTSNEEVIL--------RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 G++++ + V L V D+GVG+ ++ + PF Q R +G Sbjct: 602 -GEVVLHLWGLEQQPVPLPSWVSMRFGVVDSGVGIAAKDMGRIFDPFCQADRVLDRRYKG 660 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 TGLGL + K +V+A G+ + S +G+ L H Sbjct: 661 TGLGLSICKRLVEAMGGEIWAESQEGQGSSFRFTLTLALVEH 702 >gi|323351212|ref|ZP_08086868.1| sensor histidine kinase VicK [Streptococcus sanguinis VMC66] gi|322122436|gb|EFX94147.1| sensor histidine kinase VicK [Streptococcus sanguinis VMC66] gi|325690803|gb|EGD32804.1| sensor histidine kinase VicK [Streptococcus sanguinis SK115] gi|325696128|gb|EGD38019.1| sensor histidine kinase VicK [Streptococcus sanguinis SK160] Length = 448 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 97/380 (25%), Positives = 174/380 (45%), Gaps = 41/380 (10%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R+ +E E +L SIL +DG+ NR G I++ N +K G +++ Sbjct: 83 RLTHENLEQETKRLSSILSYMTDGVLATNRRGQIITINDMATKQLGVKRDEVQNMSILDL 142 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKI---TLGSTKEE-KLLSLRI----IIKKLPFSS 552 L S+ + Y DLR + + T+ S E + LSLR+ + ++ F S Sbjct: 143 L-----SISDEY-------DLRDLITNVPELTIDSQDENGEYLSLRVRFALVRRESGFIS 190 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 +HD +E +KE + F++ VSHE+RTPLT++ + E + Sbjct: 191 GLVAVLHDTTE--------------QDKEERERRLFVSNVSHELRTPLTSVKSYLEALDE 236 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 G L P ++ N ++ +V DLL +S+I++ +L E + ++ + Sbjct: 237 ---GALSEPVAPDFVKVSLNETNRMMRMVTDLLSLSRIDNETSHLEVELTNFTAFITFIL 293 Query: 673 SLVQLYANE---KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 + N+ K+ I + + D + Q+ NI++NAI ++P GG I +S Sbjct: 294 NRFDKIKNQDETKKYEIIRDYPITPIWVEIDTDKLTQVIDNIMNNAIKYSPDGGTITVSI 353 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 T++E++IL + D G+G+ +L K F ++ ++ GTGLGL +AK ++ + Sbjct: 354 -KTTDEQLILSIADEGLGIPKQDLPKIFDRFYRVDKARSRAQGGTGLGLAIAKEIIKQHQ 412 Query: 790 GKFYIFSTPAKGTLIEIIFP 809 G + S G+ I+ P Sbjct: 413 GFIWAKSEYGVGSTFTIVLP 432 >gi|188576475|ref|YP_001913404.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520927|gb|ACD58872.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 1131 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 121/241 (50%), Gaps = 10/241 (4%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP--LGNPRYIEYANYID 631 A+ AE S K +FLA +SHE+RTPL AI+G+S +++++ P LG I I+ Sbjct: 736 ARAQAEHASRVKDEFLATLSHELRTPLNAILGWSRLMQSEMTEPTHLGRGLVI-----IE 790 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF- 690 RS I++DLLD+S I SGK+ L E + V + L+Q A + I + Sbjct: 791 RSARAQTQIIDDLLDMSAILSGKIRLQAEHFDIAGLVRSTLELMQPTALAREIALELDAP 850 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + D ++Q+ N+LSNA+ FTP GG + ++ +E + L V+DTG+G+ Sbjct: 851 CDGELWFFGDAGRLQQVLTNLLSNALKFTPVGGTVRVAMD-IEDERLRLCVQDTGIGIAA 909 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 L F Q R G GLGL +++ +VD + G S +G L I+ P Sbjct: 910 DFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEGQGALFTIVLP 969 Query: 810 L 810 Sbjct: 970 F 970 >gi|118388836|ref|XP_001027513.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain containing protein [Tetrahymena thermophila] gi|89309283|gb|EAS07271.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain containing protein [Tetrahymena thermophila SB210] Length = 1414 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 128/240 (53%), Gaps = 14/240 (5%) Query: 571 LSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +S KI E E + K LA +SHE+RTPL + EV+KN + NP EY + Sbjct: 744 ISQQIKIKELEVKNQCKMRMLASISHELRTPLNCSMTLLEVLKN----LVSNPLAQEYID 799 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 S +L+L+I+ND+LD ++I+ GK +E L + + L+++ + K I + T Sbjct: 800 PALNSQHLLLNIINDILDFAQIDVGKFKFSYEHFDLKNIIQNCLKLIEMQSKIKNIQLLT 859 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 F+ + + +D ++QI LN+LSNA+ FT G I+I + + V DTG+G Sbjct: 860 DFSEEVNYQFYSDPTRIRQIILNLLSNALKFTQKGY-IMIRVEKFNESLTKITVEDTGIG 918 Query: 748 MTNYELEKAMKPFGQI--PNSQQIRGEGTGLGLPLAKAMVDANMG---KFYIFSTPAKGT 802 + + +++K + FG++ N++ + +G GLGL +A + +G K + S KG+ Sbjct: 919 IASEDIQKIFEIFGKVDLKNNKLLNTQGAGLGLSIASQLARG-LGQNKKIEVLSELGKGS 977 >gi|332800511|ref|YP_004462010.1| multi-sensor signal transduction histidine kinase [Tepidanaerobacter sp. Re1] gi|332698246|gb|AEE92703.1| multi-sensor signal transduction histidine kinase [Tepidanaerobacter sp. Re1] Length = 590 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 97/377 (25%), Positives = 186/377 (49%), Gaps = 37/377 (9%) Query: 440 TRINKRKMEI--EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 TR+ + EI E ++ +IL +DG+ +N EG ++ N ++ E I + F Sbjct: 234 TRLKETMEEISDEKEKMEAILINMADGVIALNDEGQVIHINPVARQMLSLE-EGINGQNF 292 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLE-----KITLGSTKEEKLLSLRIIIKKLPFSS 552 ++ L ++L++D++Q L TL TK+ L S+ +++ Sbjct: 293 SL------------ELNKLLNIDMKQLLNNDFDNSETLIKTKDAILKSIYAPLRRENRIV 340 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 + DI++ +++L +K +F+A VSHE+RTPLT I ++E + + Sbjct: 341 GHIFVFQDITK----QHRLEAMRK----------EFVANVSHELRTPLTTIKSYAETLLD 386 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 R ++ + I+ + + +V+DLL++S++++ + +P+ + + I Sbjct: 387 GALEEAEISR--QFTSVINDEADRMTRLVSDLLELSRLDNKETKWDMKPIDIGTILKNVI 444 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + + + K I+ + +P + AD V+Q+ NILSNA +TP GG+I I + Sbjct: 445 TKMDVNIKRKGQTIKANIPEELPEVFADNDKVEQVFQNILSNAYKYTPEGGKIYIDVEY- 503 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + + V + +DTGVG+ +L + + F ++ ++ GTGLGL +A+ +V A+ G+ Sbjct: 504 AEKMVKVTFKDTGVGIPKEDLPRIFERFYRVDKTRSREMGGTGLGLSIAREIVQAHGGEI 563 Query: 793 YIFSTPAKGTLIEIIFP 809 I S KGT + I P Sbjct: 564 SISSELGKGTSVIIQIP 580 >gi|256376337|ref|YP_003099997.1| GAF sensor signal transduction histidine kinase [Actinosynnema mirum DSM 43827] gi|255920640|gb|ACU36151.1| GAF sensor signal transduction histidine kinase [Actinosynnema mirum DSM 43827] Length = 399 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/257 (28%), Positives = 136/257 (52%), Gaps = 16/257 (6%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D++ W + + + + A+ K DF A VSHE+RTPLT++ G E++ + RFG Sbjct: 145 LKDLAAWVELECAVVQSTLAAQDAERVKRDFTALVSHELRTPLTSVHGSLELLASGRFGE 204 Query: 618 L--GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + R +E A ++ + ++ + ND+LD+S+++SG++ L PV L + V A+ V Sbjct: 205 MQAQASRLVEIAV---KNTDRLVRLANDVLDLSRVQSGQLRLRPAPVELADVVENAVIAV 261 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A + + T + + D + Q+ N+L+NA+ +P G + + S E Sbjct: 262 EGTAERCHVPLVTR--KDPVTVRGDADRLVQVVTNLLANAVKVSPPGQPVEVG---CSVE 316 Query: 736 EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + R VRD G+G+T+ E+++ +PF Q+ + G GLGL + + +V+++ G Sbjct: 317 GSVARVYVRDHGMGITDDEVKRIFEPFVQL----GAKSGGAGLGLAITRGIVESHGGTIA 372 Query: 794 IFSTPAKGTLIEIIFPL 810 + S G+ +I P+ Sbjct: 373 VESEAGIGSTFTVILPV 389 >gi|196249864|ref|ZP_03148560.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] gi|196210740|gb|EDY05503.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] Length = 609 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 114/423 (26%), Positives = 187/423 (44%), Gaps = 59/423 (13%) Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 S ++ ++ LAMTF K Q + + +RK+E S Sbjct: 226 SRKVKVYGYDEIGQLAMTFNNLTKKLQEAQATTEG-----------ERRKLE-------S 267 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +L +DG+ +R G ++ N A + E +L + + + Y E Sbjct: 268 VLTHMTDGVIATDRRGRVILINDAALNILNVSRETVLSSSIV-----DVLGIADQYTFET 322 Query: 517 LSLDLRQTLEKITLGSTKEEKLL---SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 L L + I ST EE + SL +I K+ + + +HD++E Sbjct: 323 L---LEEHDSLILDFSTDEELYILRASLSVIQKEGGLINGLIVVLHDVTE---------- 369 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG-NPRYIEYA-NYID 631 EK + F+A VSHE+RTPLT + + E + + + PR+I+ N + Sbjct: 370 ----QEKIDRERRQFVANVSHELRTPLTTMKSYLEALADGAWQDKEITPRFIQVVQNETE 425 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 R ++ +VNDLL +SK++S L ++ + I +L ++ IR F Sbjct: 426 R----MIRLVNDLLHLSKLDSKDYKLKKTWINFSAYFHKIIDRFELTKSDN---IR--FV 476 Query: 692 NNIPR----ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 NIPR I D + Q+ NI+SNAI ++P GG I ++E +I+ + D GVG Sbjct: 477 RNIPREAIFIEVDEDKITQVLDNIISNAIKYSPQGGTITFRVRELADE-IIISISDEGVG 535 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +L K + F ++ ++ + GTGLGL +AK +V A+ G + S KGT I Sbjct: 536 IPKADLAKIFERFYRVDKARSRKLGGTGLGLAIAKELVIAHGGTIWAESKEHKGTTIYFT 595 Query: 808 FPL 810 PL Sbjct: 596 LPL 598 >gi|153809952|ref|ZP_01962620.1| hypothetical protein RUMOBE_00333 [Ruminococcus obeum ATCC 29174] gi|149834130|gb|EDM89210.1| hypothetical protein RUMOBE_00333 [Ruminococcus obeum ATCC 29174] Length = 904 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 128/241 (53%), Gaps = 18/241 (7%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K+ FL +SH+IRTP+ AI+GF+++ ++ P + + I +S ++ ++ND+ Sbjct: 529 KTTFLNHMSHDIRTPMNAIVGFTDIAMKRK--P--DKEVEDCLKKIRQSSEYLMTLINDV 584 Query: 645 LDISKIESGKMNLHFEPVSLD--EAVSEAISLVQLYANEKRI---LIRTSFANNIPRILA 699 LDIS+IESGK L ++PV +D + +S+ + Y + + + R N P ++A Sbjct: 585 LDISRIESGK--LEYKPVLVDLRDMTDTVLSIARGYMENRDLNFSVSREELKN--PYVMA 640 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILR--VRDTGVGMTNYELE 754 D ++++ LNI+SNA+ FT GG I + ++ +I+R + DTG+GM+ Sbjct: 641 DELRIREVLLNIISNAVKFTKDGGTISFVAENCPGKDEHHLIVRYHISDTGIGMSEEFQT 700 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + F Q N + +GTGLG+ +AK VD GK + S G+ + PL Sbjct: 701 RIFDEFSQENNGARTSYKGTGLGMAIAKQYVDLMGGKIEVSSRQGVGSAFTVEIPLLIAE 760 Query: 815 H 815 H Sbjct: 761 H 761 >gi|116250178|ref|YP_766016.1| transmembrane two-component sensor histidine kinase/response regulator hybrid [Rhizobium leguminosarum bv. viciae 3841] gi|115254826|emb|CAK05900.1| putative transmembrane two-component sensor histidine kinase/response regulator hybrid [Rhizobium leguminosarum bv. viciae 3841] Length = 750 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/253 (30%), Positives = 127/253 (50%), Gaps = 8/253 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D+++ + A++ AE S+ KS LA VSHE+RTPL+ I+G + +I R Sbjct: 208 RDVTDERLIAQGREEARQKAEYNSAAKSRLLATVSHEVRTPLSGILGMTHLIAETRL--- 264 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 Y I +SG+ + +V DLLD S IE G+ LH SL + + + ++ Sbjct: 265 -TQEQQNYLASIRQSGHALTQLVEDLLDFSTIEVGRFALHPRSESLRKLLESVVEMLAHR 323 Query: 679 ANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A+EK I I + ++++P ++ D ++Q+ N++ NA+ FT GG I +++ Sbjct: 324 AHEKGIEIGATVSSDVPENMSFDPARLRQVLFNVIGNAVKFTQVGGVFI--RVSLDGDDL 381 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V D+G GMT E + F Q S + GTGLGL ++ ++ G + S Sbjct: 382 SITVTDSGPGMTAEEQARVFGEFEQ-GGSVTDKSSGTGLGLAISARIMREFNGALTVASE 440 Query: 798 PAKGTLIEIIFPL 810 +G+ I FP+ Sbjct: 441 KGRGSEFTIRFPV 453 >gi|78047771|ref|YP_363946.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036201|emb|CAJ23892.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 1137 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 122/241 (50%), Gaps = 10/241 (4%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP--LGNPRYIEYANYID 631 A+ AE + K +FLA +SHE+RTPL AI+G+S ++++ P LG I I+ Sbjct: 738 ARAQAEHANRVKDEFLATLSHELRTPLNAILGWSRLMQSDIADPANLGRGLVI-----IE 792 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF- 690 RS I++DLLD+S I SGK+ L E + V + L+Q A ++I + Sbjct: 793 RSARAQTQIIDDLLDMSAILSGKIRLQAEHFDIAGLVRSVLELMQPTALARKIALELDAP 852 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + D ++Q+ N+LSNA+ FTP+GG + ++ +E + L V+DTG+G+ Sbjct: 853 CDGELWFFGDAGRLQQVLTNLLSNALKFTPAGGTVRVAMD-VEDERLRLCVQDTGIGIAA 911 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 L F Q R G GLGL +++ +VD + G S +G L I+ P Sbjct: 912 DFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEGQGALFTIVLP 971 Query: 810 L 810 Sbjct: 972 F 972 >gi|294783470|ref|ZP_06748794.1| sensor histidine kinase/response regulator [Fusobacterium sp. 1_1_41FAA] gi|294480348|gb|EFG28125.1| sensor histidine kinase/response regulator [Fusobacterium sp. 1_1_41FAA] Length = 623 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 128/250 (51%), Gaps = 18/250 (7%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ +L +K++AE + K++FLA++SHE+RTPLT IIG+S ++ + +P Y Sbjct: 140 RERTKELRISKEMAESANKAKNEFLAKISHEMRTPLTPIIGYSRILAKD----IEDPSYK 195 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP----VSLDEAVSEAISLVQLYAN 680 E I SG +L+ N+LLD SKIESGK++L++EP V + E I L A Sbjct: 196 EKLEIIHTSGVKLLNFTNELLDFSKIESGKVDLNYEPFNVRVLFQDIYHEHIDL----AE 251 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K I + + + I +D + +IA NI+ NA+ +T G ++ + Sbjct: 252 AKGIDFKIDYLHANVSIYSDKIKIYEIAKNIIHNALKYTNKG--FVLCDVFVEKNTLYFN 309 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D+G+G++ + + F QI Q G GLGL + K ++ G + S + Sbjct: 310 VYDSGIGISEENIANIFESFVQIGKEQS----GAGLGLSITKKLLKVLNGTIEVESKVGQ 365 Query: 801 GTLIEIIFPL 810 G+ +I P+ Sbjct: 366 GSTFKIQIPI 375 >gi|167767207|ref|ZP_02439260.1| hypothetical protein CLOSS21_01726 [Clostridium sp. SS2/1] gi|167711182|gb|EDS21761.1| hypothetical protein CLOSS21_01726 [Clostridium sp. SS2/1] Length = 1068 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/257 (31%), Positives = 136/257 (52%), Gaps = 21/257 (8%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV----IKNQRFGPLGNP 621 + + L A + AE + K++FL+ +SH+IRTP+ AI+G + + I++Q Sbjct: 540 ESRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMNAIVGLTAIAGANIESQ-------D 592 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 R IE + I S +L ++N++LD+++IESGKM L E +L + V I++ + +E Sbjct: 593 RVIECLSKITESSRHLLGLINEVLDMARIESGKMTLAQEDFNLSDLVDNLITITKPVLDE 652 Query: 682 KRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + N+I + D ++Q+ +N++SNAI +TP GG I S N L Sbjct: 653 HKHNFDIHI-NHIEHEAVCGDSLRIQQVFVNLMSNAIKYTPDGGNITFSIEEKPNGFSEL 711 Query: 740 -----RVRDTGVGMTNYELEKAM-KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + D G+GM+ E +K M PF + + + R +GTGLG+ +++ +V+ G Sbjct: 712 GCYEFTIEDNGIGMSP-EFQKIMFDPFSRADDHRTTRVQGTGLGMAISRNIVNLMNGTIK 770 Query: 794 IFSTPAKGTLIEIIFPL 810 + ST KGT I + L Sbjct: 771 VDSTLHKGTKITVTIYL 787 >gi|72384217|ref|YP_293571.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Ralstonia eutropha JMP134] gi|72123560|gb|AAZ65714.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Ralstonia eutropha JMP134] Length = 404 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/261 (30%), Positives = 144/261 (55%), Gaps = 17/261 (6%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 +SC DI E KQ A+ AE + KS+FL+ +SHE+R PL AI+GF+++ Sbjct: 4 LASCT-----DIEEQKQ-------AQAGAESANRAKSEFLSSMSHELRNPLNAILGFAQL 51 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + ++ P + + + I ++G +L+++N++LD++KIE+G+ +L EPVS+ + + Sbjct: 52 MSSESPPPSPSQQA--SIDQILKAGWHLLELINEVLDLAKIEAGQASLSPEPVSVVDILH 109 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 E ++++ A ++ + +R + + AD +KQI LN+LSNAI + G + Sbjct: 110 ECHAMLEQQALKRAVCMRFPLLDLPYFVRADRTRLKQILLNLLSNAIKYNRDQGTAEVQV 169 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 T + + + VRDTG G+ L + +PF ++ + EGTG+GL +AK + + Sbjct: 170 TK--GDRIRVSVRDTGAGLAPDRLAQLFQPFNRL-GHEAGSVEGTGIGLVVAKRLAELMG 226 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G + ST G++ + P+ Sbjct: 227 GTIGVESTVGVGSVFWVELPV 247 >gi|323493067|ref|ZP_08098201.1| histidine kinase [Vibrio brasiliensis LMG 20546] gi|323312715|gb|EGA65845.1| histidine kinase [Vibrio brasiliensis LMG 20546] Length = 1088 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 85/265 (32%), Positives = 135/265 (50%), Gaps = 12/265 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS+ K ++ L + + A S KS FLA +SHEIRTP+ ++G ++ Sbjct: 410 DISKEKNTQDVLRNESEAAHAASEAKSMFLANMSHEIRTPMNGVVGMLSLLSETELK--S 467 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + R + + I S +L I+ND+LD SKIE+GKM+L PV L + + ++ L A Sbjct: 468 DQRTM--VSSIKDSALTLLHIINDILDFSKIEAGKMSLESVPVELQSLLERTLDVLHLQA 525 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG----GQIIISTTHTSN 734 K I + ++ ++P+ I++D + QI LN++ NA+ FT S G+I +S + SN Sbjct: 526 RNKGIEMYLTYDPSLPKMIMSDSVRLSQIMLNLIGNAVKFTESTDERVGKIWVSASLGSN 585 Query: 735 E---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + L V D G+GMT +L++ K F Q S GTGLGL + ++++D G Sbjct: 586 GIAPCIDLIVEDNGIGMTKEQLKRLFKSFTQADTSTTRLYGGTGLGLSITQSLLDLMGGT 645 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHP 816 + S + I P P Sbjct: 646 ISVESEFGVSSRFSIEVPFIAVESP 670 >gi|300716381|ref|YP_003741184.1| Sensor protein [Erwinia billingiae Eb661] gi|299062217|emb|CAX59334.1| Sensor protein [Erwinia billingiae Eb661] Length = 1192 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 135/256 (52%), Gaps = 12/256 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E + +L AK+ AE + KS FL+ +SHEIRTP+ AIIG ++ + Sbjct: 681 DITEREALFAELRDAKERAEDSNRAKSVFLSTMSHEIRTPMNAIIGMLDMALKKGRQKEI 740 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + +E A S + ++ ++ D+LDIS+IE G + + E V+L + + + + Q A Sbjct: 741 DLQALEVAY---ESADSLVGLIGDILDISRIEGGHLEFNPETVNLGKLIDNMLKVYQGLA 797 Query: 680 NEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH---TSN 734 +K I + + + I +LAD +KQ+ N+LSNAI FT GG + +S T +S+ Sbjct: 798 IDKNITLSKHYPDEPIVDVLADPLRIKQVLANLLSNAIKFTDQGGVTLTLSQTRVPGSSS 857 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + + V+D+G+G+ +PF Q N R GTGLGL +++ + + G + Sbjct: 858 VQYCIEVQDSGIGIAAASQAALFQPFSQAEN----RRAGTGLGLYISRTICENMQGSLTL 913 Query: 795 FSTPAKGTLIEIIFPL 810 S GT + + L Sbjct: 914 SSEKGVGTRVRAMLAL 929 >gi|288934293|ref|YP_003438352.1| integral membrane sensor hybrid histidine kinase [Klebsiella variicola At-22] gi|288889022|gb|ADC57340.1| integral membrane sensor hybrid histidine kinase [Klebsiella variicola At-22] Length = 946 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 130/253 (51%), Gaps = 7/253 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 443 DVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKAL-PKG 501 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 502 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLPLV 558 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P ++ D ++Q+ N+LSNAI FT +G II + + + Sbjct: 559 VRKQLGLYCFIEPDVPEQMSGDPMRLQQVISNLLSNAIKFTDTG--CIILHVQCAGDYLQ 616 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + VRDTG G+ E+ + PF Q+ Q +GTGLGL + + ++ G + + P Sbjct: 617 ISVRDTGEGIPAKEVLRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIAVETEP 676 Query: 799 AKGTLIEIIFPLY 811 G+ I PLY Sbjct: 677 GMGSRFTIRIPLY 689 >gi|323492298|ref|ZP_08097454.1| putative two-component regulatory system multi-sensor hybrid histidine kinase [Vibrio brasiliensis LMG 20546] gi|323313462|gb|EGA66570.1| putative two-component regulatory system multi-sensor hybrid histidine kinase [Vibrio brasiliensis LMG 20546] Length = 1197 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 128/243 (52%), Gaps = 20/243 (8%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS------EVIKNQRFGPLGNPRY 623 KL+ A+ A + KSDFLA +SHEIRTP+ AIIG S ++ K QR Sbjct: 466 KLAVARDEANSANRAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTKAQR--------- 516 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 Y + + S + +L ++ND+LD SKIE+GK+++ L+ + +LV L A+E+ Sbjct: 517 -NYIHKVKLSADSLLGLINDILDFSKIEAGKLDIEQVDFHLENVLDNISNLVGLRASERG 575 Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR- 740 + + ++P L D + QI +N+ +NA+ FT G +I I + ++++L+ Sbjct: 576 LELLIHIDRDVPTTLVGDPLRLGQILINLANNAVKFTEKGEIKISIRVVERNGDDLVLQF 635 Query: 741 -VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V D+G+GMT + K F Q +S + GTGLGL ++K + G + S Sbjct: 636 SVEDSGIGMTPEQTAKLFSKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIEVQSEAG 695 Query: 800 KGT 802 KG+ Sbjct: 696 KGS 698 >gi|242242957|ref|ZP_04797402.1| possible histidine kinase [Staphylococcus epidermidis W23144] gi|242233558|gb|EES35870.1| possible histidine kinase [Staphylococcus epidermidis W23144] gi|319401006|gb|EFV89225.1| his Kinase A domain protein [Staphylococcus epidermidis FRI909] Length = 565 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 94/364 (25%), Positives = 185/364 (50%), Gaps = 27/364 (7%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 +I+ +L + LE + +I++ G I+ N A ++F P + + K + F++ + Sbjct: 223 KIQSNRLKTTLENIPSSVLMIDKHGEIVVANHAYYQVFN-PDQMVENKSYIGFIDDSIEK 281 Query: 508 -VMNHYLTEILSLDLRQTLE-KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 ++ + TE + + + LE I TK + + I+ K + +HDI+ + Sbjct: 282 LIIESFRTEKV---IYEQLEVDINNVHTKYFDVSCIPILTKSKKNLQGMVVVLHDITNLQ 338 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + +N + +F+A VSHE++TP+T+I GF+E + G + + ++ Sbjct: 339 KLENL--------------RREFVANVSHELKTPITSIKGFAETLIE---GAKNDEQSLD 381 Query: 626 -YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + N I + N + +V DLLD+S IE K L ++L E I +Q A KRI Sbjct: 382 MFLNIILKESNRIESLVTDLLDLSHIEQQK-ELEINYMNLSELAINIIDNLQTQAQNKRI 440 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 I++ ++ I A + Q+ N+LSNAI+++ ++I+ N+ V L ++D Sbjct: 441 KIQSEIEKDVI-IEAHENKIAQVITNLLSNAINYSSEDNKVIVRVYRNDNK-VYLEIQDY 498 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + ++ + F ++ ++ GTGLGL + K +V+A+ G+ + S P KG++ Sbjct: 499 GIGISETDQKRIFERFYRVDKARSRDSGGTGLGLSITKHIVEAHNGRIDVKSEPGKGSIF 558 Query: 805 EIIF 808 +++F Sbjct: 559 KVLF 562 >gi|224826722|ref|ZP_03699822.1| multi-sensor hybrid histidine kinase [Lutiella nitroferrum 2002] gi|224600942|gb|EEG07125.1| multi-sensor hybrid histidine kinase [Lutiella nitroferrum 2002] Length = 1418 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/248 (30%), Positives = 130/248 (52%), Gaps = 10/248 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I+ KQ++ +L A + A+ + KS FLA +SHEIRTP+ ++G E++ PL Sbjct: 885 NITALKQQEAELIEACRQADSANHAKSAFLAAMSHEIRTPMNGVLGMVELLA---LTPL- 940 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +P + + I S +L +++D+LD SKIE+G+++L E S+ V++ L A Sbjct: 941 DPEQHDAVDTIQESAKTLLRLIDDILDFSKIEAGRLDLAPEATSVAGIVAQVHGLYLENA 1000 Query: 680 NEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K + T + P +L D ++QI N +SNA+ FT G + + + + +E+ Sbjct: 1001 RRKGLWFTTWVDERVAPCLLLDSLRLRQILQNFVSNALKFTQQ-GSVEMRVSLLAEDELA 1059 Query: 739 LRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +R DTG+GMT + + +PF Q + R GTGLGL + + + G + Sbjct: 1060 QTLRFDVVDTGIGMTRDTVARLFEPFTQAESDTTRRFGGTGLGLAICRRLARLMGGDVSL 1119 Query: 795 FSTPAKGT 802 S P +G+ Sbjct: 1120 DSEPGQGS 1127 >gi|254483583|ref|ZP_05096807.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [marine gamma proteobacterium HTCC2148] gi|214036145|gb|EEB76828.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [marine gamma proteobacterium HTCC2148] Length = 635 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/253 (28%), Positives = 136/253 (53%), Gaps = 11/253 (4%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E K + L+ A++ AE S KS FLA ++HEIRTP+T+I+G+++++ G L + Sbjct: 225 AELKSQALDLTKARRSAESASEAKSRFLANMTHEIRTPMTSIVGYADLLSA---GELDDV 281 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + I++ + S + +++ ++LD++ +E+GK L + +SL + + + + + A Sbjct: 282 QKIKWRRQLISSTRHLQELIGNVLDVAAVEAGKATLDLDRISLTDFLDDCVENQRPRAKS 341 Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHT-SNEEVI 738 K + + + +P ++ D V+QI N++SNA+ +T G ++ +S S ++I Sbjct: 342 KDLELIIDYQGTVPTEVVVDRVKVRQILTNLISNALKYTKEGYVKVTVSAAPVNSGCKLI 401 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQI---PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++ DTG GM + +A PF ++ N+ +I EG GLGL L +++ G Sbjct: 402 FQIEDTGCGMAPELINEAFLPFSRLHKTSNANEI--EGAGLGLALVTSLLKLMQGSLEAQ 459 Query: 796 STPAKGTLIEIIF 808 S +GT I Sbjct: 460 SEEGRGTTFTIAL 472 >gi|254448754|ref|ZP_05062211.1| multi-sensor hybrid histidine kinase [gamma proteobacterium HTCC5015] gi|198261595|gb|EDY85883.1| multi-sensor hybrid histidine kinase [gamma proteobacterium HTCC5015] Length = 882 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/246 (32%), Positives = 127/246 (51%), Gaps = 5/246 (2%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 SE KQ+ L+ A+ A + KS FLA +SHEIRTPL IIGF +++ + N Sbjct: 272 SELKQKNEALTIAQAEAVSANKAKSVFLANMSHEIRTPLNGIIGFLDMLNRTKVDSQQN- 330 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 +YI A +S ++ ++N +LD S+IESGKM L + + +D+ ++E L A E Sbjct: 331 QYISTAQVAAKS---LIQLINGILDFSRIESGKMPLKQDEIPIDDLLAEIYDLHAPSAFE 387 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K + + A ++P ++ D KQI N+LSNAI FT G + N + + Sbjct: 388 KGVELLFFPAQSLPSTLMLDANVFKQIIGNLLSNAIKFTQHGDIQLHMNYFAENRAIAIS 447 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D+GVG++ + F Q N+ G+GLGL + +++V+ + G + P Sbjct: 448 VLDSGVGISQEVINDIFNEFEQGDNTTARVHGGSGLGLAITRSLVELHGGSISAHTRPEG 507 Query: 801 GTLIEI 806 G ++ Sbjct: 508 GARFDL 513 >gi|254230485|ref|ZP_04923860.1| sensory box sensor histidine kinase/response regulator [Vibrio sp. Ex25] gi|151936991|gb|EDN55874.1| sensory box sensor histidine kinase/response regulator [Vibrio sp. Ex25] Length = 1128 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 88/317 (27%), Positives = 151/317 (47%), Gaps = 18/317 (5%) Query: 508 VMNHYLTEILS---LDLRQTLEKITLGSTKEEKLLSLR---IIIKKLPFSSCYSLTMHDI 561 + +HYL+ ++ L L EK++ G + ++R I L F I Sbjct: 370 IASHYLSNFITSPLLKLTWAAEKVSAGDLDDTTFNTVRKDEIGRLALSFERMQRSIREKI 429 Query: 562 SEWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 K++ +L +I +K++ K +FLA SHE+RTPL ++G +E + + Sbjct: 430 QTIKKQNEELESNIQIIQKQNDELQLADKLKDEFLATTSHELRTPLHGMVGIAETLASGA 489 Query: 615 FGPLGNPRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + P +Y + I +SG + ++V+DLLD K+ G M++ VSL A + Sbjct: 490 NGAI--PASQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLE 547 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 L K I I ++ + AD + ++Q+ N++ NAI +T S G+I+IS + Sbjct: 548 LSSHLLGNKTIRIINQVPADLKVVSADPQRLEQVLYNLIGNAIKYT-SEGKIVIS-ANVV 605 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ V ++V DTG G+ LE +P Q +G GLGL +++ +++ G Y Sbjct: 606 DDHVRVQVVDTGQGIPAEHLEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGSLY 665 Query: 794 IFSTPAKGTLIEIIFPL 810 + S P GT PL Sbjct: 666 VSSQPMVGTTFSFTLPL 682 >gi|70729128|ref|YP_258864.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] gi|68343427|gb|AAY91033.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] Length = 633 Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 131/261 (50%), Gaps = 11/261 (4%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E Q ++L ++ AE+ + KSDFLA +SHE+RTP+ ++G ++++ + Sbjct: 243 EQHQAMSQLIQTREEAERANKAKSDFLAMMSHELRTPMNGVLGMLQLLETTQM----TQE 298 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 EYA S +L ++ND+LD S+IE + L P +L E ++ + Q A ++ Sbjct: 299 QSEYAALASESTEHLLKVINDILDFSRIERSALELEHIPFNLAELITSSAQAFQHSALQR 358 Query: 683 RILIRTSFANNIP--RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-- 738 + ++ + ++ D ++QI +N++ NA+ FT G I + E++ Sbjct: 359 GLDLQLRLPPGMESLQVKGDPTRIRQILVNLIGNALKFTEQGSITIEPQWQALDHELLWF 418 Query: 739 -LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 VRD+G+G++ LE F Q +S R GTGLGLP+A+ + + G S Sbjct: 419 TCAVRDSGIGISPASLELMFDAFQQADSSISRRYGGTGLGLPIARTLAERMGGTLRAQSE 478 Query: 798 PAKGTL--IEIIFPLYDTSHP 816 +G++ +EI L+ S P Sbjct: 479 EGRGSVFTLEIPLALFQQSLP 499 >gi|258623945|ref|ZP_05718898.1| sensor histidine kinase LuxQ [Vibrio mimicus VM603] gi|258583739|gb|EEW08535.1| sensor histidine kinase LuxQ [Vibrio mimicus VM603] Length = 857 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 137/256 (53%), Gaps = 9/256 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++ + + + A++ AE+ + +++FLA++SHE+RTPL ++G S+++K PL Sbjct: 454 QDVTSIAEAEKQSQVARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT---PL 510 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + E+ + SG +L ++ND+LD S++E GK + L E V + + Sbjct: 511 TDEQR-EHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKSEFRLKELVCAIDRIYRPL 569 Query: 679 ANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-- 735 N+K I L+ S + + +D + QI N+L+NAI FT G I ++ + Sbjct: 570 CNDKGIELVVESNITSATLVRSDQIRINQILFNLLNNAIKFTHQGS-IRVALELIEGDPL 628 Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +++++V DTG+G+ +L +PF Q ++ G+GLGL + ++V+ G+ ++ Sbjct: 629 AQLVIQVMDTGIGIREEDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHV 688 Query: 795 FSTPAKGTLIEIIFPL 810 S GT EI P+ Sbjct: 689 SSEYGHGTRFEIQLPI 704 >gi|255008019|ref|ZP_05280145.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12] gi|313145735|ref|ZP_07807928.1| two-component sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313134502|gb|EFR51862.1| two-component sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 794 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 91/363 (25%), Positives = 170/363 (46%), Gaps = 9/363 (2%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 L A I++ N +G + + ++L G + R F ++ + +++ + + Sbjct: 433 LSADGGQISLWNMQGDDIEFDDNYTRLTGMGKRRVKRSTFLEYVHPDDSQLLSSFYGALY 492 Query: 518 -SLDLRQTLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 S ++ + T+E + LR +K + + M +I E + +++L AK Sbjct: 493 KSPGMQIQRARFCFDETEEYQWYELRCRSLKDVEGEMMLAGIMQNIQEAVEREHQLILAK 552 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 ++AEK + K FL +SHEIRTPL AI+GF+ V+ + + + I+ + Sbjct: 553 QMAEK-AELKQSFLNNMSHEIRTPLNAIVGFTNVLIGEGSEEIDPDEKASMLDIINHNNE 611 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 L+L ++ND+L+IS+++SG ++ + + E + E I L + + N +P Sbjct: 612 LLLKLINDVLEISRLDSGSLDFEIKEWDMTEIMKE-IYLTYQPLIQPSLQFHLELGNPVP 670 Query: 696 RIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 ++ D Q+ N L+NA FT +G I+ + EV + V+DTG G+ EL Sbjct: 671 LLVHIDRFRFTQVISNFLNNANKFTQNGHIILGCKVDEEHHEVCIYVKDTGKGIDEKELM 730 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 F + +Q G+GLGL ++K +++ G+ + S KG+ +I L D Sbjct: 731 MIFDRFYKTDEFEQ----GSGLGLAISKVIIERLSGRIEVHSEKGKGSCFAVILSLVDVR 786 Query: 815 HPH 817 H Sbjct: 787 KDH 789 >gi|138897043|ref|YP_001127496.1| sensory box histidine kinase YycG [Geobacillus thermodenitrificans NG80-2] gi|134268556|gb|ABO68751.1| Sensory box histidine kinase YycG [Geobacillus thermodenitrificans NG80-2] Length = 609 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 114/423 (26%), Positives = 187/423 (44%), Gaps = 59/423 (13%) Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 S ++ ++ LAMTF N ++ T +RK+E S Sbjct: 226 SRKVKVYGYDEIGQLAMTF-----------NNLTKKLQEAQATTEGERRKLE-------S 267 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +L +DG+ +R G ++ N A + E +L + + + Y E Sbjct: 268 VLTHMTDGVIATDRRGRVILINDAALNILNVSRETVLSSSIV-----DVLGIADQYTFET 322 Query: 517 LSLDLRQTLEKITLGSTKEEKLL---SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 L L + I ST EE + SL +I K+ + + +HD++E Sbjct: 323 L---LEEHDSLILDFSTDEELYILRASLSVIQKEGGLINGLIVVLHDVTE---------- 369 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG-NPRYIEYA-NYID 631 EK + F+A VSHE+RTPLT + + E + + + PR+I+ N + Sbjct: 370 ----QEKIDRERRQFVANVSHELRTPLTTMKSYLEALADGAWQDKEITPRFIQVVQNETE 425 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 R ++ +VNDLL +SK++S L ++ + I +L ++ IR F Sbjct: 426 R----MIRLVNDLLHLSKLDSKDYKLKKTWINFSAYFHKIIDRFELTKSDN---IR--FV 476 Query: 692 NNIPR----ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 NIPR I D + Q+ NI+SNAI ++P GG I ++E +I+ + D GVG Sbjct: 477 RNIPREAIFIEVDEDKITQVLDNIISNAIKYSPQGGTITFRVRELADE-IIISISDEGVG 535 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +L K + F ++ ++ + GTGLGL +AK +V A+ G + S KGT I Sbjct: 536 IPKADLAKIFERFYRVDKARSRKLGGTGLGLAIAKELVIAHGGTIWAESKEHKGTTIYFT 595 Query: 808 FPL 810 PL Sbjct: 596 LPL 598 >gi|282862971|ref|ZP_06272031.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE] gi|282561953|gb|EFB67495.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE] Length = 1438 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 132/261 (50%), Gaps = 16/261 (6%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN-- 620 E +Q + +L + S++KS+FLA +SHE+RTPL + + + P N Sbjct: 849 EIEQARQELEERAQQLSLASTYKSEFLANMSHELRTPLNS---LLILAQLLAQNPTRNLT 905 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + +EYA I +G+ +L ++ND+LD+SK+E+GKM+L+ E +L + + + + Sbjct: 906 VKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGKMDLNPERFTLRQLLDYVEATFRPMTT 965 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFT----------PSGGQIIIST 729 +K + S A +P +L D ++Q+ N++SNA+ FT P+ + + Sbjct: 966 QKSLTFTISTAPGVPVDLLTDDSRLRQVLRNLISNAVKFTERGSVELRIEPAADHELPDS 1025 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 H V RV+DTG+G+ +LE F Q + + GTGLGL +++ + Sbjct: 1026 VHRGGGVVAFRVKDTGIGIAEQQLETIFGAFQQADGTTSRKYGGTGLGLSISREIAHLLG 1085 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G STP +G+ + P+ Sbjct: 1086 GALTARSTPGRGSTFTLYLPV 1106 >gi|124265863|ref|YP_001019867.1| sensor histidine kinase/response regulator [Methylibium petroleiphilum PM1] gi|124258638|gb|ABM93632.1| sensor histidine kinase/response regulator [Methylibium petroleiphilum PM1] Length = 1170 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 134/246 (54%), Gaps = 9/246 (3%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 ++ ++ K + A AE+ + KS ++ +SHE+RTPL +I+G++++++ P P Sbjct: 686 AQLQEAKLQAERAMHQAEQANRAKSRYITAISHELRTPLNSILGYAQLLEEDEAMP---P 742 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + I R G+ + ++ D LD+++IESGK+ L P+ L EAV E + +L A Sbjct: 743 HRAQAVRVIRRGGDHLASLIEDTLDLARIESGKLALEVRPLRLCEAVQELARMFELQARA 802 Query: 682 KRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K ++ R P ++ AD + ++QI +N+L NA+ FT G ++ + E Sbjct: 803 KGLVFRHEIEG--PDVVRADEKRLRQILINLLGNAVKFTAQGE--VVFRMRYAREIAHFE 858 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 + D+G GMT+ EL + +PF + + G GTG+GL +AK + D G+ + STP + Sbjct: 859 IEDSGPGMTSDELARVFEPFERG-GALAGGGHGTGIGLTIAKMLTDLMGGEMTVRSTPGR 917 Query: 801 GTLIEI 806 GT I Sbjct: 918 GTAFAI 923 >gi|325921205|ref|ZP_08183069.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC 19865] gi|325548312|gb|EGD19302.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC 19865] Length = 894 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/268 (30%), Positives = 144/268 (53%), Gaps = 21/268 (7%) Query: 552 SCYSLTMHDISEWKQEKNKLSHAKK-IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 SC + +Q++ L+ ++ +AE+ S KS+FLA + HE+RTP+T ++G SE++ Sbjct: 483 SCLGVWAWRRRVRRQQEWILAQQRQQLAEQASVAKSNFLANLGHEVRTPMTGVLGMSELL 542 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEA 667 PL N + + + I ++G +L +VND LD+++IE+GK+ L F+P L + Sbjct: 543 LAT---PL-NAKQRSHVDAIRKAGAHLLRLVNDALDLARIEAGKLELVQQPFDPAQLTQE 598 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR---ILADLRSVKQIALNILSNAIHFTPSGGQ 724 +++ + + +E R L R + N +P +L D V+QI +N+L NAI F+ G Sbjct: 599 LADFMHPI----SEARGL-RFHYRNQLPAQLVVLGDATRVRQILINLLGNAIKFSERG-- 651 Query: 725 IIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQ-QIRGEGTGLGLPLAK 782 +S T + + EV+ +VRD+G G+ + ++ + F Q + R G+GLGL + + Sbjct: 652 -EVSLTASQHGEVLRFKVRDSGPGIGPEQQKRLFQRFEQADGAHTSARYGGSGLGLAICQ 710 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + A G + S GT + PL Sbjct: 711 ELTVAMKGTIRVRSRLGVGTQFSVDLPL 738 >gi|323499018|ref|ZP_08103998.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326] gi|323315853|gb|EGA68884.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326] Length = 570 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/258 (29%), Positives = 134/258 (51%), Gaps = 17/258 (6%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + + + K ++ KL+ K AEK + KS FLA +SHE+RTPL+A++G+ +V+ Sbjct: 185 LQQLVDIKTQQLKLAQVK--AEKANEAKSRFLAMMSHELRTPLSAVLGYIDVL----LAD 238 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 L +E ++ S L+L ++ND+L++S+IESG+ + ++ V L+ + + Sbjct: 239 LKQENQLEILEKMESSAELLLVLINDILELSRIESGEFPIKYQWVRLNTELKFVLEHFYA 298 Query: 678 YANEKRILIRTSFANNIP-----RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 A+ K + F+ NI + D V QI N++ NA+ FT +G + T + Sbjct: 299 LADAKGL----KFSVNIEFDESLSLWIDPARVMQIVFNLVGNALKFTHAGE--VCLTANV 352 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 N+ +++ V+DTG+G+ L+ F Q +S GTGLGL ++K +V G Sbjct: 353 INQHLVITVKDTGIGIDKDRLDIVFSEFKQADDSITRSYGGTGLGLTISKHLVGLMSGNI 412 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S +G+ I P+ Sbjct: 413 SVKSKLGQGSTFRIELPI 430 >gi|159897466|ref|YP_001543713.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159890505|gb|ABX03585.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 534 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 88/365 (24%), Positives = 168/365 (46%), Gaps = 13/365 (3%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L +I+E+++DG+ +++ I N A+ +L G+ E+ L +P L + +N Sbjct: 170 RLDAIIESSADGMMMLDTRWRITRFNAAMERLTGWSREEALGRPCAEVLAIHNQQGVNIC 229 Query: 513 LTEI-LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 LT L L + T + ++ S YS+ + + Sbjct: 230 LTACPLQLFPDNDHPSVEGWVTHRDG--------HEIYVGSSYSVVREPTGRFGGAIANI 281 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 K +++ +S F++ +SHE++TP+ I G++ + L E I+ Sbjct: 282 RDITK-QKRDEQQQSTFISVMSHELKTPVAIIKGYASTLSRTDV-KLNKATKAEMLTGIE 339 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 + + ++ DLL++S++++G + LH P L E ++ + ++R + F Sbjct: 340 EEADRLARLIGDLLEVSRMQAGGLRLHPAPFDLSE-LAADVVAAFAATVDQRFEFQLRFE 398 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 +P + AD ++ + N++SNAI ++P GG I + N V+ V D G+G+ Sbjct: 399 PKLPHVYADQERIRMVLSNLISNAIKYSPEGGVIRLGG-WPENGHVLSYVTDEGIGIAQE 457 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 EL K PF ++ N +G GLGL L K++++A+ G+ + ST KG+ P+ Sbjct: 458 ELPKLFTPFYRVDNRLARETQGAGLGLYLTKSIIEAHGGRMWADSTVGKGSRFYWTLPIA 517 Query: 812 DTSHP 816 S P Sbjct: 518 PPSLP 522 >gi|317498208|ref|ZP_07956509.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316894563|gb|EFV16744.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 939 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/257 (31%), Positives = 136/257 (52%), Gaps = 21/257 (8%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV----IKNQRFGPLGNP 621 + + L A + AE + K++FL+ +SH+IRTP+ AI+G + + I++Q Sbjct: 411 ESRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMNAIVGLTAIAGANIESQ-------D 463 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 R IE + I S +L ++N++LD+++IESGKM L E +L + V I++ + +E Sbjct: 464 RVIECLSKITESSRHLLGLINEVLDMARIESGKMTLAQEDFNLSDLVDNLITITKPVLDE 523 Query: 682 KRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + N+I + D ++Q+ +N++SNAI +TP GG I S N L Sbjct: 524 HKHNFDIHI-NHIEHEAVCGDSLRIQQVFVNLMSNAIKYTPDGGNITFSIEEKPNGFSEL 582 Query: 740 -----RVRDTGVGMTNYELEKAM-KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + D G+GM+ E +K M PF + + + R +GTGLG+ +++ +V+ G Sbjct: 583 GCYEFTIEDNGIGMSP-EFQKIMFDPFSRADDHRTTRVQGTGLGMAISRNIVNLMNGTIK 641 Query: 794 IFSTPAKGTLIEIIFPL 810 + ST KGT I + L Sbjct: 642 VDSTLHKGTKITVTIYL 658 >gi|295092339|emb|CBK78446.1| Signal transduction histidine kinase [Clostridium cf. saccharolyticum K10] Length = 885 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 128/252 (50%), Gaps = 16/252 (6%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + +L A + AEK + KS+FL+R+SHEIRTP+ IIG +I Q G + R + Sbjct: 343 QKELEAAIQQAEKANRAKSEFLSRMSHEIRTPMNGIIGMG-MIAMQNLGD--SSRVEDCI 399 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRI 684 I+ S +L ++N++LD+SKIESG++ + F+ E+VS IS A +K + Sbjct: 400 RKINLSSRHLLTLINEVLDMSKIESGRIEIKRDVFDFRLFLESVSNVIS---GQARDKGL 456 Query: 685 LIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---- 739 F ++ + D V QI +N+LSNA+ FTP GG I++ + + Sbjct: 457 NFDVIFLGDMEEELFGDALRVNQILMNLLSNALKFTPEGGSIVLRIAKLDEDSTTVWLKF 516 Query: 740 RVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG G+ EK PF Q + + G GTGLGL +++ + G+ + S Sbjct: 517 EVSDTGCGIEEKNYEKIFMPFEQEHEDISHVYG-GTGLGLSISRRFAELMDGRLTVSSQV 575 Query: 799 AKGTLIEIIFPL 810 KG+ + P Sbjct: 576 GKGSTFTLTMPF 587 >gi|162453847|ref|YP_001616214.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161164429|emb|CAN95734.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 955 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/278 (28%), Positives = 132/278 (47%), Gaps = 26/278 (9%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q +L A A+ + KSDFLA +SHE+RTPL I+G+++++K R + R + Sbjct: 450 EQRTAELKEATVAADAANRAKSDFLANMSHELRTPLNGILGYAQILKRSRSLGEQDLRGV 509 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E I SG+ +L ++ND+LD++KIES M +H ++ + ++ A +K I Sbjct: 510 E---VIAESGSHLLTLINDVLDLAKIESRTMEIHPNDFHFPSFLNATAEICRIRAEQKGI 566 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST-------------- 729 +P + AD R ++QI LN+L NAI FT +G Sbjct: 567 AFVFKPGPALPEGVRADQRRLRQILLNLLGNAIKFTENGSVTFTVAEVPGGSRGARKDLP 626 Query: 730 -------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 + T + + DTG G+ L++ PF Q+ + + R EGTGLGL +++ Sbjct: 627 EDGASPESRTKTHRIRFEIEDTGTGIGAEHLDQIFLPFKQVGDKSRHR-EGTGLGLAISQ 685 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 +V G + S KG++ + L + D + Sbjct: 686 RIVTLMGGSIQVRSELGKGSVFWMDLTLAEAPDWTDTV 723 >gi|302383368|ref|YP_003819191.1| integral membrane sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302193996|gb|ADL01568.1| integral membrane sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 605 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/271 (27%), Positives = 136/271 (50%), Gaps = 20/271 (7%) Query: 548 LPFSSCYSLTMHDISEWKQEKNK------------LSHAKKIAEKESSHKSDFLARVSHE 595 +PF++ + ++ ++E+ K L A+ A+ + KS+FL +SHE Sbjct: 171 MPFTAAGLFVLVTMTMLREERIKAFQEHQAHLIEELQGARDKADAANQAKSNFLGVISHE 230 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 +RTP+ ++G ++++ + R EY + I SG+ +L ++ND+LD++KIE+GKM Sbjct: 231 LRTPMNGVLGAAQLLGSTRL----ESTQREYLSIIRNSGDNLLHLLNDILDMTKIEAGKM 286 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSN 714 + L++ A K + ++F P ++ D V Q+ N+LSN Sbjct: 287 TFEVIDIGLEDLHRRVTGPFAAQAEAKGLQFVSTFEGETPSVVRGDPLRVCQVIQNLLSN 346 Query: 715 AIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 A+ FT +G ++ + S++ V V D+G G+ +LE+ +PF Q+ S R Sbjct: 347 AVKFTDTGTIHYVVRSRRISDKRVAFDFSVTDSGAGIAPADLERLFQPFTQVDASSTRRF 406 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GTGLGL +A+ M + G + S +G+ Sbjct: 407 GGTGLGLTIARRMANIMGGDIQVESIVGQGS 437 >gi|154498538|ref|ZP_02036916.1| hypothetical protein BACCAP_02528 [Bacteroides capillosus ATCC 29799] gi|150272606|gb|EDM99791.1| hypothetical protein BACCAP_02528 [Bacteroides capillosus ATCC 29799] Length = 589 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 98/369 (26%), Positives = 168/369 (45%), Gaps = 38/369 (10%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF--GYPVEDILRKPFTVFLE 502 R+ E E +L ++ +DG+ +R+G ++ N A ++ PV T+F + Sbjct: 241 REAENERNKLGTLFLHMTDGVVAFSRDGAVIQCNPAAERMLHRTIPVGGDEVTYDTLFGD 300 Query: 503 -QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLT 557 PSV+ + + LD + ++ L E LL+ PFSS + Sbjct: 301 IAALPSVL--AVEQPGYLDGEREIDGTIL-----ELLLA--------PFSSESAGGVMVV 345 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 +HD++E + K + +F+A VSHE+RTPLT I ++E + + G Sbjct: 346 IHDVTEQR--------------KTEEMRREFVANVSHELRTPLTNIRSYAETLVDNA-GE 390 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 L + I + + IV DLL +S+ +SG L P S + A+ + + V L Sbjct: 391 LPPNMEKNFLGVILNESDRMTHIVQDLLTLSRFDSGHSELKLAPFSFEGAIRDVYNAVLL 450 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A +R N+P IL D + Q+ +N++SNAI +TP GG I IS + V Sbjct: 451 DAQRHGHTLRLGIEENLPNILGDRERILQVMMNVVSNAIKYTPDGGSIAISAGRL-RDRV 509 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V D G+G+ + + + F ++ ++ GTGLGL +AK ++D + G + Sbjct: 510 WMEVADNGIGIPAADRPRIFERFYRVDKARSRESGGTGLGLSIAKEIIDRHEGVIRLVDK 569 Query: 798 PAKGTLIEI 806 G + + Sbjct: 570 DGPGLTVRV 578 >gi|29832107|ref|NP_826741.1| two-component system sensor kinase [Streptomyces avermitilis MA-4680] gi|29609225|dbj|BAC73276.1| putative two-component system sensor kinase [Streptomyces avermitilis MA-4680] Length = 1383 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/265 (28%), Positives = 142/265 (53%), Gaps = 12/265 (4%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E ++ +L + S +KS+FLA +SHE+RTPL +++ + ++ + G L + Sbjct: 915 AELQRSNAELEEKAALLATSSQYKSEFLANMSHELRTPLNSLLILARLLSDNPDGHLSD- 973 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + +++A I RSG+ +L ++ND+LD+SKIE+G+M++ + + L + + + + + Sbjct: 974 QEVQFATTIHRSGSDLLQLINDILDLSKIEAGRMDVRPKKLPLIKLLDYVHATFRPLTID 1033 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG------GQIIIST---TH 731 + + + ++PR + +D + ++QI N+LSNAI FT SG G++ T Sbjct: 1034 RGLAFDVAVGEDVPREMYSDEQRLQQILRNLLSNAIKFTASGRVELRVGRVKDPEHRYTR 1093 Query: 732 TSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 +EEVI V DTG+G+ +L + F Q + + GTGLGL +++ + G Sbjct: 1094 EDSEEVIAFAVSDTGIGIAPEKLPVIFEAFQQADGTTNRKYGGTGLGLSISREIAGLLGG 1153 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSH 815 + S P KG+ + P+ H Sbjct: 1154 RIIAESVPGKGSTFTLYVPVVSPGH 1178 >gi|75906539|ref|YP_320835.1| signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75700264|gb|ABA19940.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Anabaena variabilis ATCC 29413] Length = 1399 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/272 (30%), Positives = 143/272 (52%), Gaps = 15/272 (5%) Query: 540 SLRIIIKKLPF---SSCYSLTMHDISEWKQ---EKNKL----SHAKKIAEKESSHKSDFL 589 +LR+ +K+P + L + DI++ KQ E+ +L A++ AE + K +FL Sbjct: 960 TLRLNARKMPQIDDTQLILLLIEDITQQKQLEAERTQLLAQEHSAREAAETANRAKDEFL 1019 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 + +SHE+R PL I+G++ ++ + + +E I+RS +++DLLD+S+ Sbjct: 1020 SILSHELRNPLNTILGWASLLSTHQLEADTVNQGLEA---IERSAQAQAHLISDLLDVSR 1076 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709 I SG++ + +P+ L + AI++V+L A K I I T I+ D ++Q+ Sbjct: 1077 ISSGRLRMDAQPIELIPIIEAAIAVVRLAAEAKNIHIETQLDPTQKTIVGDPIRLQQVIW 1136 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 N+LSNAI FTP G+I I+ +T I ++ DTG G++ L + F Q S+ Sbjct: 1137 NLLSNAIKFTPVRGRIDITLEYTDFHAQI-QISDTGQGISPDFLPFIFERFRQADGSRTR 1195 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 G GLGL + + +V+ + G +P +G Sbjct: 1196 SNTGLGLGLSIVRHLVELHGGTVAA-QSPGEG 1226 >gi|160935826|ref|ZP_02083201.1| hypothetical protein CLOBOL_00717 [Clostridium bolteae ATCC BAA-613] gi|158441570|gb|EDP19280.1| hypothetical protein CLOBOL_00717 [Clostridium bolteae ATCC BAA-613] Length = 928 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/263 (28%), Positives = 147/263 (55%), Gaps = 15/263 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E +++ L A + A+ + K++FL+ +SH+IRTP+ AIIG + + + L +P Sbjct: 395 TEQARQRQALEDACQAAQIANDAKTNFLSSMSHDIRTPMNAIIGMAVIAQ----ANLQSP 450 Query: 622 RYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 I+ N I+ S +L+++N++LD+S+IESGK++L E VSL E + + + + + A Sbjct: 451 EKIQDCLNKINVSSRHLLNLINEVLDMSRIESGKIDLISENVSLPELIEDVMDVFRPLAA 510 Query: 681 EKRILIRTSFANNI--PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-----S 733 EK + ++ + A+++ +++ D ++Q+ +N+LSNAI +TP GG + + Sbjct: 511 EKHLELQIN-ADHVRHEKVVTDQNRLQQVLVNLLSNAIKYTPEGGSVGLRVREIPAFAKG 569 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + V D G+GM+ + +PF + S+ + +GTGLG+ + + +V G Sbjct: 570 KGQYEFIVTDNGIGMSGDFIPHIFEPFSRTEESKTNQIQGTGLGMAITQNIVSMMNGTIE 629 Query: 794 IFSTPAKGT--LIEIIFPLYDTS 814 + S +G+ ++ + F L + + Sbjct: 630 VKSVLGEGSQFIVAVSFKLCEEA 652 >gi|153007087|ref|YP_001381412.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152030660|gb|ABS28428.1| PAS/PAC sensor signal transduction histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 969 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/249 (29%), Positives = 132/249 (53%), Gaps = 9/249 (3%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP-RYI 624 Q+ A++ AE H+ + LA VSH++RTPL+AII + V+ G +P R Sbjct: 719 QDVTDTRRAQREAEDAVHHRDEVLAIVSHDLRTPLSAIIMGARVLGG---GAAEDPERVR 775 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 A I SG + ++ DLLD++ +E G++++ + EA +++ A K + Sbjct: 776 ATATRIASSGERMNRLIGDLLDLASLERGRLSMRRSAHAPSTLAREAADVIRPAAEAKGL 835 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 +R A+++P + D + Q+ N+ SNA+ T SG I ++ ++V+ V+DT Sbjct: 836 DVRWRAADDLPLVPCDHDRILQVLGNLTSNAVKATASGHVAIGASAR--GDQVLFEVQDT 893 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G G+ + EL F + ++ GTGLGL +A+A+V+A+ G+ + STP GT++ Sbjct: 894 GPGIPSEELPHVFDRFRRGRSAAY---AGTGLGLAIARALVEAHGGRIWAESTPGLGTVV 950 Query: 805 EIIFPLYDT 813 P+ ++ Sbjct: 951 RFSLPVVES 959 >gi|320104436|ref|YP_004180027.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] gi|319751718|gb|ADV63478.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] Length = 1011 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 86/309 (27%), Positives = 145/309 (46%), Gaps = 66/309 (21%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K+ + L ++ +E+ +SD LA++SHEIRTPLTAI+G + + Sbjct: 506 DLTELKRTQAILERSRWASEQAMRARSDHLAQLSHEIRTPLTAILGNVDRLVESDI---- 561 Query: 620 NPR-YIEYANY-IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 PR E A + RSG + ++ ++LD +KIE+G +++H+ + V++ + L Sbjct: 562 -PRDEAERARQTLIRSGRHLSHLLANVLDFAKIEAGGLDIHWSDANPHAIVADVVMLTSH 620 Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----- 731 A EK I + +P I D V+QI N+++NAI +TP GG++ + H Sbjct: 621 AAMEKGIRLAHLVEETVPETIRTDPLRVQQIVTNLVTNAIKYTPPGGEVTLRVIHRVAVS 680 Query: 732 ----------------------------------TSNEE-----------VILRVRDTGV 746 T++E+ V+++VRDTGV Sbjct: 681 DPDTTESEHLGHPPETETVFASFSTSIPSSRWETTTSEDSGAEPTVERGWVVVQVRDTGV 740 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGT-----GLGLPLAKAMVDANMGKFYIFSTPAKG 801 G+ +L + +PF Q+ RG GT GLGL +A+ + G + S P +G Sbjct: 741 GIAADQLPRVFEPFSQVAAE---RGSGTAPVGYGLGLHIARTLAHQLDGFIQVRSAPGRG 797 Query: 802 TLIEIIFPL 810 +L E+ P+ Sbjct: 798 SLFELWLPV 806 >gi|229133944|ref|ZP_04262766.1| hypothetical protein bcere0014_28600 [Bacillus cereus BDRD-ST196] gi|228649504|gb|EEL05517.1| hypothetical protein bcere0014_28600 [Bacillus cereus BDRD-ST196] Length = 801 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 102/379 (26%), Positives = 182/379 (48%), Gaps = 56/379 (14%) Query: 452 MQLCSILEATSDGIAII--NREGI---ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 M+ +++E +D + ++ N + + + N K FGY E++L PF + Q +P Sbjct: 454 MKYRALIEQATDAVYVVELNEDHVPSRFIEVNPVGCKRFGYSREELLSLPFPNVVPQGSP 513 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGST----KEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562 ++ + LEKI G T ++E + R II ++ +S+ + +++ Sbjct: 514 LIV-------------RLLEKIREGQTSFTLQDEYVFPTRKII-----TTEFSVRVFNLN 555 Query: 563 EWKQEKNKLSHAKKIAEK----ESSHKSDFLARV-------SHEIRTPLTAIIGFSEVIK 611 +K LS ++ I E+ E KS+ LA V +HEI PLTA+ GF +++K Sbjct: 556 ---GKKVFLSISRDITERLKTEELLRKSEKLAVVGQLATAMAHEINNPLTAMKGFMQLLK 612 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + GN Y N + + I N+ + ++K + K+ +P + + + Sbjct: 613 ST-----GNENDQGYINIVSSEIERIESITNEFMAVAKPQVVKI----QPNDIGVLMDQV 663 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 ++L+Q A I IR F +I I + +KQ+ +NIL NAI P GG+I+I Sbjct: 664 LTLLQPQAMMNNIQIRIDFTPDISLIPCEGNQLKQVFVNILKNAIESMPRGGEILIQIDK 723 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 N+++I+R D G G++ + +PF I+ EG GLGL + +++ + GK Sbjct: 724 LDNDQIIIRFIDQGCGISKERIPYLGEPF------YSIKEEGIGLGLMICYKIIETHHGK 777 Query: 792 FYIFSTPAKGTLIEIIFPL 810 +I S KGT +E+ P+ Sbjct: 778 VFIESEINKGTTVEVTLPI 796 >gi|298528476|ref|ZP_07015880.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298512128|gb|EFI36030.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1599 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/265 (31%), Positives = 134/265 (50%), Gaps = 14/265 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DISE ++ + +L AK+ AE + KS FLA +SHEIRTPLT I+G E++ ++ G Sbjct: 1030 DISELEKAQQELIQAKEQAEAANRAKSTFLANMSHEIRTPLTGIMGSMEMLASEISSENG 1089 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R ++ RS + I++D+LD+SK+E+G+M L L + L A Sbjct: 1090 R-RIMDMTRESARS---LQRIIDDILDLSKVEAGRMELSSREFVLSAVLDRVQGLYAAQA 1145 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII------STTHT 732 K + + S + +L D ++QI N++ NA+ FT S GQ+ + S + Sbjct: 1146 ENKNVRLSKSLDPGVQDNLLGDASRLEQILRNLVGNAVKFT-SHGQVTLRARPADSQDGS 1204 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 S + V V+DTG G+ +L + F Q +S + +GTGLGL + + + G Sbjct: 1205 SKQVVRFEVQDTGPGIPEDKLTDIFESFTQADSSFKKSHQGTGLGLTICRQLTRLMGGNI 1264 Query: 793 YIFSTPAKGT--LIEIIFPLYDTSH 815 + S P +G+ + EI F + H Sbjct: 1265 NVESAPGEGSTFVAEIPFEVVGQKH 1289 >gi|325289318|ref|YP_004265499.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophobotulus glycolicus DSM 8271] gi|324964719|gb|ADY55498.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophobotulus glycolicus DSM 8271] Length = 675 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 107/387 (27%), Positives = 185/387 (47%), Gaps = 33/387 (8%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-----TVF-LEQNTPS 507 L ++LEA GIA++ + ++ NR + +LF E+IL + F ++ E+ Sbjct: 145 LNNVLEALPAGIALVGEDAVVRWVNRPLLELFQIREENILGQRFGNGAHCIYSREKGCGE 204 Query: 508 VMNHYLTEI---LSLDLRQ--TLEKITLGST----KEEKLLSLRIIIKKLPFSSCYS--- 555 EI + L LR+ +L+ + L + +EE L I +P ++ Sbjct: 205 GEKCRFCEIRQNIGLVLREKVSLKDVMLQRSFHRAEEENCRWLNISF--IPLAAAGEKRI 262 Query: 556 -LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 L + DI+E K + L ++ AE + KS+FLA +SHEIRTPL ++G +++ R Sbjct: 263 VLAIEDITEQKNYEEALQKSRDEAESANRVKSEFLANMSHEIRTPLNGLVGMMDLL--SR 320 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P + E S N + +++ +LD S+IE+GK+ + L + E I + Sbjct: 321 TDP--DEEQQECIRMAKFSANTLFKVIDGILDFSRIEAGKIAIAKISFDLKALLEEVIKI 378 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + A +K + + ++P L D ++QI N++ NA+ FT GQI +S Sbjct: 379 HTVLAEQKGLALEHDIPPDLPPYLTGDPDHLRQILNNLIGNALKFTDR-GQIKVSVREIR 437 Query: 734 NE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 ++ E+ V D+GVG++ +++ K F Q+ +S R GTGLGL + K + + Sbjct: 438 HQGQQVELEFCVADSGVGISPGKMDLLFKRFSQVDSSVTRRYSGTGLGLAICKQLAELMG 497 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHP 816 G S KG++ F L T+ P Sbjct: 498 GAIRAESEMGKGSVFR--FTLVFTAAP 522 >gi|323498876|ref|ZP_08103859.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326] gi|323315988|gb|EGA69016.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326] Length = 710 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/274 (28%), Positives = 136/274 (49%), Gaps = 18/274 (6%) Query: 555 SLTMHDISEW------------KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 SL M I W K+ + L A+ AE+ + K+ FLA +SHE+RTPL A Sbjct: 197 SLVMIGIISWMYWNQSKLSQTLKERSDNLEQARLQAEQSAEAKARFLANMSHEMRTPLNA 256 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 +IG S+ + + + + +A+ I+ SG +L ++N +LD+SKIE GK+ L E Sbjct: 257 VIGLSQ----KEYYKACDEQTKNFASLINSSGQHLLKLINSVLDLSKIEQGKIQLEEERF 312 Query: 663 SLDEAVSEAISL-VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 E + + ++ +++ + + T + ++ AD + Q+ N+ NA+ FT Sbjct: 313 YCSELIDASRTIFIEMSKPDVDVFFSTEIDADY-QLCADKTKLLQVINNLSFNAVKFTSY 371 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 G + ++++L + DTG+GMT +L+K F Q +S + GTGLGL + Sbjct: 372 GYVEVKIAVDPLMKQLVLTINDTGIGMTPEQLDKVFNEFTQADDSITRQYGGTGLGLSIC 431 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 +++V GK + S KGT + P+ T Sbjct: 432 QSLVTLMGGKISVESETQKGTSFVVSMPIKVTGQ 465 >gi|313673507|ref|YP_004051618.1| multi-sensor hybrid histidine kinase [Calditerrivibrio nitroreducens DSM 19672] gi|312940263|gb|ADR19455.1| multi-sensor hybrid histidine kinase [Calditerrivibrio nitroreducens DSM 19672] Length = 1101 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 87/282 (30%), Positives = 145/282 (51%), Gaps = 15/282 (5%) Query: 529 TLGSTKEEKLLSLRII-IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 T+ T +EK + +R + IK FS + D +E K++ K+ AE+ + KS Sbjct: 547 TILDTVDEKHIEIRKVPIKSFKFSGILWI-FSDRTETISNMKKMAMLKEKAEEANKAKSL 605 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FL+ +SHEIRTP+ IIG E+I + Y N I S +L ++ND+LD+ Sbjct: 606 FLSSMSHEIRTPINGIIGAIELIPKHNL----SDEISSYLNIIKSSSEHLLMLINDILDL 661 Query: 648 SKIESGKM---NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 SKIESG + N+ FEP+ + + V S++ K + + + + D + Sbjct: 662 SKIESGYLKLENIPFEPIKVLKRVR---SIIYPTTIPKGLTFSIDYPDRGICVYGDPHRL 718 Query: 705 KQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFG 761 Q+ +N+ NA+ FT G ++ + S E+ L+ VRDTG+G+ +++K KPF Sbjct: 719 SQVLINLSGNAVKFTEKGEVEVKMEILSESETEIRLKFSVRDTGIGIPEDKMDKLFKPFS 778 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 QI +S + GTGLGL +++ +V G + S +G++ Sbjct: 779 QIDDSHTRKFGGTGLGLVISQNLVKMFGGIIKVESKVGEGSI 820 >gi|254416897|ref|ZP_05030645.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196176261|gb|EDX71277.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 1138 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/273 (28%), Positives = 140/273 (51%), Gaps = 17/273 (6%) Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 P S + + D + +Q +L+ + + K +FLA +SHE++TPLTA++G S Sbjct: 432 PNSQLWLVMAQDATTQQQVAQELTAKNADLVQLNRLKDEFLAYISHELKTPLTAVLGLST 491 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL---- 664 ++K+Q G L N R YA I ++G ++ +VND+LD++++E+G++ L EPV + Sbjct: 492 LLKDQLLGEL-NERQARYARLIYQNGRQLMAVVNDILDLTRMETGQLELTLEPVQIQSLC 550 Query: 665 DEAVSEAISLVQLYA----NEKRILIRTSFANNIP----RILADLRSVKQIALNILSNAI 716 D A +A+ Q+Y+ N + SF +I I+AD ++Q+ ++LSNA+ Sbjct: 551 DRAYQQAL---QVYSDNNPNHEGATPDISFVLDIEPGLDTIIADELRLRQMLAHLLSNAL 607 Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 FT S + + + + + + DTG+G+ + + F Q+ + EGTGL Sbjct: 608 KFTDSQNTVGLK-VNNQDGWIAFTIWDTGIGIPEDKQHLIFQKFQQLEEPLTRQFEGTGL 666 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GL L + + + G S G+ ++ P Sbjct: 667 GLVLTQRLARLHGGDISFISKNGNGSEFTLLLP 699 >gi|262342064|gb|ACY54552.1| response regulator/sensor histidine kinase component [Pseudomonas syringae pv. syringae] Length = 238 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 122/211 (57%), Gaps = 8/211 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+K A + S KS+FLA +SHEIRTPL I+GF+ +++ PR +Y Sbjct: 32 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEL----TPRQFDYLGT 87 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++S + +L I+N++LD SKIE+GK+ L P +L + + + ++++ A+ K++ + + Sbjct: 88 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 147 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745 + P L+ D ++QI N++SNAI FT G + + EE + + V+DTG Sbjct: 148 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 207 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 +G+++ ++ + F Q NS + GTGL Sbjct: 208 IGLSSQDVRALFQAFSQADNSLSRQPGGTGL 238 >gi|300865287|ref|ZP_07110101.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300336760|emb|CBN55251.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1581 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 89/302 (29%), Positives = 145/302 (48%), Gaps = 52/302 (17%) Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 S+ ++ +I + KQ ++ L AK++AE + KS+FLA +SHE+RTPL I+G+ ++I Sbjct: 1053 STLFAQAKTEICDRKQAESALQQAKEVAEAANRAKSEFLANMSHELRTPLNGILGYVQLI 1112 Query: 611 KNQR------FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 K + LGN I + G +L ++ D+LD+SKIE+ KM L +L Sbjct: 1113 KADKNITEDQQESLGN---------IQQCGEHLLTLIEDILDLSKIEARKMELSPVEFNL 1163 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG- 722 V L Q+ + +K I +++P + D + ++Q+ +N+L NA+ FT SG Sbjct: 1164 PNFVKNIADLFQMRSAQKNIAFTCEQISSLPTYVCGDDKRLRQVLINLLGNAVKFTNSGS 1223 Query: 723 -------------------GQIIIS-----TTHTSNEEVI----------LRVRDTGVGM 748 G I S TT T I +V DTG+G+ Sbjct: 1224 VTFRVGYVEAGDWGETGDWGLGITSKKEQGTTKTEQLTAINYPLPITKIRFQVEDTGIGI 1283 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +LE+ PF Q+ + + EGTGLGL ++ +V G+ + S+ KG++ I Sbjct: 1284 EENKLEEIFLPFHQVSD-RVYSIEGTGLGLSISYKLVKMMGGEISVKSSLGKGSVFWIDL 1342 Query: 809 PL 810 L Sbjct: 1343 EL 1344 >gi|294055873|ref|YP_003549531.1| histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293615206|gb|ADE55361.1| histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 586 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 128/253 (50%), Gaps = 12/253 (4%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +KL++++ A + K FLA +SHEIRTP+ ++G +++ + + + Sbjct: 168 DKLAYSRDKALEGVRMKDIFLANMSHEIRTPMNGVLGMIDLLYDTEM----DAEQEQLVG 223 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 S ++ I+ND+LD SKIE+GK+++ P +L E V + +L A EK I + Sbjct: 224 TARSSAETLMRIINDILDFSKIEAGKVSVELMPFNLIEIVESSAALYSEAATEKEIDLAV 283 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTG 745 +F + ++ D +Q+ N++SNA+ FT S G++ I S ++ V+DTG Sbjct: 284 AFDDVPAWVVGDPHRYQQVLNNLISNAVKFTDS-GEVEIRACQVETGSGLGILTEVKDTG 342 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ ++ K +PF Q S R GTGLGL + + + + G+ S GT+ Sbjct: 343 IGIPASKVTKLFEPFTQAEESHARRFGGTGLGLSICRNLCELLGGEIECDSQLDDGTVFS 402 Query: 806 IIFPLYDTSHPHD 818 + P PH+ Sbjct: 403 FVLPF----APHN 411 >gi|291559470|emb|CBL38270.1| Signal transduction histidine kinase [butyrate-producing bacterium SSC/2] Length = 1068 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/257 (31%), Positives = 136/257 (52%), Gaps = 21/257 (8%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV----IKNQRFGPLGNP 621 + + L A + AE + K++FL+ +SH+IRTP+ AI+G + + I++Q Sbjct: 540 ESRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMNAIVGLTAIAGANIESQ-------D 592 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 R IE + I S +L ++N++LD+++IESGKM L E +L + V I++ + +E Sbjct: 593 RVIECLSKITESSRHLLGLINEVLDMARIESGKMTLAQEDFNLSDLVDNLITITKPVLDE 652 Query: 682 KRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + N+I + D ++Q+ +N++SNAI +TP GG I S N L Sbjct: 653 HKHNFDIHI-NHIEHEAVCGDSLRIQQVFVNLMSNAIKYTPDGGNITFSIEEKPNGFSEL 711 Query: 740 -----RVRDTGVGMTNYELEKAM-KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + D G+GM+ E +K M PF + + + R +GTGLG+ +++ +V+ G Sbjct: 712 GCYEFTIEDNGIGMSP-EFQKIMFDPFSRADDHRTTRVQGTGLGMAISRNIVNLMDGTIK 770 Query: 794 IFSTPAKGTLIEIIFPL 810 + ST KGT I + L Sbjct: 771 VDSTLHKGTKITVTIYL 787 >gi|284036959|ref|YP_003386889.1| histidine kinase [Spirosoma linguale DSM 74] gi|283816252|gb|ADB38090.1| histidine kinase [Spirosoma linguale DSM 74] Length = 906 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 130/241 (53%), Gaps = 4/241 (1%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E +Q LS A + ++ K DF++ V+HEIRTPLT+I SE++ +Q + Sbjct: 658 AELQQMTQHLSLANERLKQSDEQKDDFVSTVTHEIRTPLTSIRALSEILHDQ--ADMDES 715 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 E+ + + R + ++N +LD+ + +SG+ +L E +S+ + V+EA+ V A + Sbjct: 716 MRQEFLSRVIRETERLSRLINQVLDLERYDSGRYHLSTERISMVDLVAEAVENVAQLARD 775 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEEVILR 740 K++ + P + D + Q+ +N+LSNAI F+P+G G + + T +E V L Sbjct: 776 KQVTLEICPTQAQPVVDGDRDRLMQVLINLLSNAIKFSPAGTGHVTVCLT-IRDERVNLT 834 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 VRD G+G+ + + F Q N + +G+GLGL + K ++ + G+ + S P + Sbjct: 835 VRDNGIGIEPDVQQLIFEKFYQATNQTLRKPKGSGLGLAITKKIIALHNGQITVSSVPGE 894 Query: 801 G 801 G Sbjct: 895 G 895 >gi|253997050|ref|YP_003049114.1| histidine kinase [Methylotenera mobilis JLW8] gi|253983729|gb|ACT48587.1| histidine kinase [Methylotenera mobilis JLW8] Length = 656 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 126/223 (56%), Gaps = 7/223 (3%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK A++ ++ KS FL+R SHE+RTPL AI+GF+ +++ L + + E + I + Sbjct: 274 AKLQAQEANAEKSIFLSRTSHELRTPLNAILGFAHLLETD----LTDLKQKESLSMISAA 329 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +L +++ +LDI++IESG M + +P + + EA + A + I I+T + + Sbjct: 330 GKHLLKLIDQVLDIARIESGDMQIDIQPCDISALLDEATHFMHPLAKARDIQIKTYYPPD 389 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 + I D + + QI LN++SNA+ + P+ ++ + + +++VI+ V D G G+ Sbjct: 390 LV-IATDRQRLLQIVLNLISNALKYGPANAKVYMQ-AYKKDDKVIIEVADEGKGIPKSMH 447 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + PF ++ ++ + EG GLGL L+ M+ A G+ I S Sbjct: 448 HRVFTPFERL-GAENTKVEGVGLGLALSNQMMAALGGEINIAS 489 >gi|171915305|ref|ZP_02930775.1| sensory transduction histidine kinase [Verrucomicrobium spinosum DSM 4136] Length = 621 Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 125/240 (52%), Gaps = 6/240 (2%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L+ A+ A+ S KSDFLA +SHE+RTP+ A++G ++++ P+ + EY Sbjct: 254 LTTAEMAAQASSRAKSDFLATMSHELRTPMNAVLGMIQLLQKANLKPVEH----EYLKTA 309 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 G+ ++ ++ND+LD S+I+ G + L + V L + + + V+ A +++ + Sbjct: 310 YEVGDRLMTMINDILDFSQIDVGTIALVRDRVDLPALLEDVTASVRDEARLRKLDLTAHI 369 Query: 691 ANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 A P + D ++Q+ +++ NA+ FT SG + I+ E+ ++ DTGVG+ Sbjct: 370 APGCPTLFWGDNTRLRQLLRHVVGNAVKFTDSG-YVRITAKVVLPGEIQFKIEDTGVGIG 428 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 E F Q +S + R GTGLGL ++K + DA G+ + S +GT I P Sbjct: 429 KENQEALFDAFYQSDSSIRRRHGGTGLGLAISKRLCDAMKGRIWFESEVGRGTTFHIALP 488 >gi|73538366|ref|YP_298733.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Ralstonia eutropha JMP134] gi|72121703|gb|AAZ63889.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Ralstonia eutropha JMP134] Length = 1152 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 86/258 (33%), Positives = 132/258 (51%), Gaps = 9/258 (3%) Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 +++EK + A+K+AE + + K+ F + VSHE RTPLT ++G E + +R L Sbjct: 337 YEEEKQR---AEKLAELDRA-KTTFFSNVSHEFRTPLTLMLGPVEDLLMRRSDELSAAAK 392 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + A + R+G +L +VN LLD S+IE+G+M +EP L E SL + A E+ Sbjct: 393 EDLA-VVGRNGLRLLRLVNSLLDFSRIEAGRMQATYEPTDLARFTEELASLFR-SACERA 450 Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 L T + +P D ++I LN+LSNA FT G+I +S T ++ LRV Sbjct: 451 GLTLTVDCDTLPEPAFVDRAMWEKIVLNLLSNAFKFT-QAGRIAVSL-RTIGDKAELRVA 508 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG G+ EL + + F ++ + EG G+GL L ++ + G STP GT Sbjct: 509 DTGTGIPADELPRIFERFHRVQGTHGRTHEGAGIGLALTLELIKLHGGTIRADSTPGAGT 568 Query: 803 LIEIIFPLYDTSHPHDCI 820 + P+ P D I Sbjct: 569 TFIVEIPMGKAHLPADRI 586 Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 117/247 (47%), Gaps = 5/247 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ L H K + K +FL ++HE+R PL I + ++ R Sbjct: 764 REALEALRHRGKALREADRRKDEFLNILAHELRGPLATISNTAHILGQSR---TDTELAR 820 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I+R ++ +V+DLLD ++I GK+ LH E V L A+ +AI + A E Sbjct: 821 DAQKRIERQLRHLVRLVDDLLDTNRITQGKLQLHIERVDLQAAIRDAIETCRPLAEELER 880 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + + AD + Q+ N+LSNA +T GG + +S +EV+LRV+D Sbjct: 881 EVTLDVPAESIWLDADPVRLAQVIGNLLSNAYKYTEHGGHVWLSV-EPRGDEVLLRVKDD 939 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTL 803 GVG+ L F Q+ +S G G+GL L K +VD + G+ FS P++G+ Sbjct: 940 GVGIPAAALPSIFDLFMQVRSSLNRARGGLGIGLALVKRLVDMHGGQVEGFSDGPSRGSE 999 Query: 804 IEIIFPL 810 + P+ Sbjct: 1000 FVVRLPM 1006 >gi|42524257|ref|NP_969637.1| sensor histidine kinase/response regulator [Bdellovibrio bacteriovorus HD100] gi|39576465|emb|CAE80630.1| sensor histidine kinase/response regulator [Bdellovibrio bacteriovorus HD100] Length = 878 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 126/227 (55%), Gaps = 7/227 (3%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 +K S KS+FLA +SHEIRTPL I+G S++++ PL N Y + ++G+ +L Sbjct: 490 KKASETKSEFLANMSHEIRTPLNVIVGMSDLLEE---SPL-NEDQKHYVDISKKAGHNLL 545 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI- 697 I+ND+LDISKIE+G + L V L V++ + +L A EK + + + + I Sbjct: 546 SIINDILDISKIEAGLLTLEKTEVDLHSLVNDITEMFELKAREKNLELSVYLSEDTHSIF 605 Query: 698 LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE-EVILRVRDTGVGMTNYELEK 755 + D ++Q+ N++SN++ FT G ++ + T E +I V DTG+G+ ++ + Sbjct: 606 MGDPTRIRQVLSNLISNSLKFTTDGSIRVEVMKNQTEMEGNLIFHVSDTGIGIPRDKIPQ 665 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +PF Q ++ + GTGLGL ++K +V G + S +G+ Sbjct: 666 LFQPFTQADSTITRKFGGTGLGLSISKRLVKMMNGDITVESELHRGS 712 >gi|305667709|ref|YP_003863996.1| two-component system sensor histidine kinase/response regulator [Maribacter sp. HTCC2170] gi|88709759|gb|EAR01992.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Maribacter sp. HTCC2170] Length = 1356 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 133/246 (54%), Gaps = 12/246 (4%) Query: 574 AKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 +KK+A ES+ K+ ++HE RTPLT I+G ++ ++++ P Sbjct: 827 SKKLAVSESARLKEVNQLKNSLYDNITHEFRTPLTVILGMTDALESE-LNTKTTPPINNA 885 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I R+GN +L +VN++LD+SK+ESG + + +++ + Q +A E I Sbjct: 886 VEMIRRNGNNLLSLVNEMLDLSKLESGHLETNMAQINVVPFIKYLGESFQSFAQEDEI-- 943 Query: 687 RTSFANNIPRILADLRSVK--QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + + + ++ D+ + K I N+LSNAI FTP+ G+I++ + +N +I++V DT Sbjct: 944 HFTVYSEVDELMMDVDTTKLSTIISNLLSNAIKFTPALGKIVLHLHNENNTHLIIKVSDT 1003 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G G++ EL F Q ++ + +GTG+GL L K +V+ G+ + + +G++ Sbjct: 1004 GTGISKDELPHIFNRFYQADSTVTRKRDGTGIGLALTKELVNLLGGEISVTTAVDEGSVF 1063 Query: 805 EIIFPL 810 ++I P+ Sbjct: 1064 KVILPI 1069 >gi|330831032|ref|YP_004393984.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas veronii B565] gi|328806168|gb|AEB51367.1| Two-component system hybrid sensor histidine kinase/response regulator [Aeromonas veronii B565] Length = 770 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 73/269 (27%), Positives = 141/269 (52%), Gaps = 24/269 (8%) Query: 545 IKKLPFSSCYSLTM------HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 ++K+PF + + DI+E KQ ++KL EK S K+ F++ +SHE+RT Sbjct: 244 LRKVPFFDRFGKRLGLLGFGRDITERKQYQDKL-------EKASRDKTTFISTISHELRT 296 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PL I+G S ++ + PL +P + I S + +I ND++D+ K++ ++ + Sbjct: 297 PLNGIVGLSRMLMDT---PL-DPSQRQQLKTIHLSAVTLGNIFNDIIDLDKLDRRRLEIA 352 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIH 717 + L + E +L ++ A +K + + ++P+ ++AD ++Q+ N++ NA+ Sbjct: 353 PTRLDLPAFLDELETLSRIQAEQKGLYLHFDRDGDMPQFVMADGTRLRQVLWNLVGNAVK 412 Query: 718 FTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 FT GG + +H ++E + V DTG+G+ + EK + Q+ + G Sbjct: 413 FTDEGGVTVRCLSHPADEPGKLALHFEVEDTGIGIPRAQQEKIFAMYYQVQGKKH--ATG 470 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TG+GL +++ +V A G+ Y+ S P +G+ Sbjct: 471 TGIGLAVSRQLVQAMGGRLYVDSDPGEGS 499 >gi|258516894|ref|YP_003193116.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257780599|gb|ACV64493.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 1155 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/265 (28%), Positives = 143/265 (53%), Gaps = 22/265 (8%) Query: 565 KQEKNKLSHAKKIAEKES-------SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 K++ +L +++++ E+++ +KS+FLA +SHE+RTPL +++ S ++ + Sbjct: 437 KKKNEELEYSRRMIEEKARDLELSGKYKSEFLANMSHELRTPLNSLLILSRLLYENKESN 496 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 L + +E+A I SG+ +L+++ND+LD+SKIE+GK++L + + + + ++ Sbjct: 497 L-TEKQVEFARTIHSSGSDLLELINDILDLSKIEAGKVDLFIQDLDIADLAGSVERNLRH 555 Query: 678 YANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A EK + + ++P I+ D + ++QI N+LSNAI FT S G I + +E Sbjct: 556 MAEEKGLTFDIELSQSMPSIIRTDRQRLEQIIKNLLSNAIKFT-SQGSICLKIGRPYSEA 614 Query: 737 VILR------------VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 ++R V DTG+G+ +++ +PF Q + + GTGLGL +++ + Sbjct: 615 KLMRSDLDIRNTVAFTVSDTGIGIAADKMKLIFEPFQQADGTTSRQYGGTGLGLSISREL 674 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809 V G+ + S G+ I P Sbjct: 675 VRCLGGEIQLESREGYGSTFTIYLP 699 >gi|254784466|ref|YP_003071894.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae T7901] gi|237686265|gb|ACR13529.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae T7901] Length = 781 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 131/243 (53%), Gaps = 9/243 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+EK + + + + KS F+A +SHEIRTP+ +IG E++++ PL + + Sbjct: 247 KEEKIETRRMIERVKAANQAKSQFIATMSHEIRTPMNGVIGMIEMLRDT---PLNDSQK- 302 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 Y + I RSG +L+I+ND+LD SKIE+GKMNL L+E +++ + L +++ I Sbjct: 303 HYLDVIFRSGESLLEIINDILDYSKIEAGKMNLENVDFDLNELLNDCVQLFSATTHKRDI 362 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII--STTHTSNEEVILR- 740 + + P ++ D ++QI +N++ NA FT +G +++ S ++E +LR Sbjct: 363 EFVCAISPETPTQLRGDPTRLRQIVVNLIGNAFKFTSNGHVMVLVKSLQDRTSEHPLLRF 422 Query: 741 -VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 + D+G+G++ + F Q S R GTGLGL + K + + G + S Sbjct: 423 SIVDSGIGISKEIQRNLFQAFNQADTSTTRRYGGTGLGLAICKQLAELMGGTIGVESEYG 482 Query: 800 KGT 802 KG+ Sbjct: 483 KGS 485 >gi|162455442|ref|YP_001617808.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161166024|emb|CAN97329.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 922 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 125/250 (50%), Gaps = 8/250 (3%) Query: 565 KQEKNKLSHAKK---IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 ++E+ L+ ++K AE + K +FLA VSHE+RTPLTAI+G++ +IK++ P Sbjct: 508 RREQQALAQSEKDRIRAEDANRMKDEFLATVSHELRTPLTAILGWARLIKDKALAP---E 564 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 R + I+R+ + IV+D+L +S+I +GK+ L V L + A+ + A Sbjct: 565 RVKQGMASIERNAHAQAQIVDDILTVSRIITGKLRLRTIAVDLAAVIEAAVDTITPTAKA 624 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 K I IR + + D ++Q+ N+LSNA+ FTP G + + S+ +V + V Sbjct: 625 KEIEIRVEPGEGLSHVCGDPDRLQQVMWNLLSNAVKFTPKRGLVTVRVGR-SDSQVAISV 683 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAK 800 D G G+ L F Q +S G GLGL + + +V+ + G S Sbjct: 684 TDNGKGIATSFLPYVFDRFRQGDSSPTRAHGGLGLGLAIVRHLVELHGGTVEAESPGEGA 743 Query: 801 GTLIEIIFPL 810 G+ + PL Sbjct: 744 GSTFTVTLPL 753 >gi|291518146|emb|CBK73367.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Response regulator receiver domain [Butyrivibrio fibrisolvens 16/4] Length = 481 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 128/235 (54%), Gaps = 12/235 (5%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDR 632 A++ A+ + KS FLA +SHEIRTP+ I+G E+I + + + +E YA I Sbjct: 99 AERQAQTATEAKSSFLANMSHEIRTPINTIMGMDEMILRET-----SEKVVEEYALDIKA 153 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 + +L ++ND+LDI+KIESGKM L + + ++ V + A EK + +R + A+ Sbjct: 154 ASQNLLSLINDILDITKIESGKMGLVNGEYQFMSLMHDVLNNVMIRAKEKGLEVRLNIAS 213 Query: 693 NIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDTGVG 747 NIP + D ++Q+ NIL+NA+ +T G I IS T N ++ VRDTG+G Sbjct: 214 NIPCDMFGDDVRIRQVLTNILTNAVKYTQE-GYIDISATCKRNYDNTADLTFAVRDTGIG 272 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + ++++ + F ++ ++ EG GLG+ + + ++ + S KG+ Sbjct: 273 IKQEDIKRMFESFERLEENRNRNIEGAGLGMAITQNLLKMMGSNLEVHSVYGKGS 327 >gi|29347984|ref|NP_811487.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29339886|gb|AAO77681.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 419 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 77/256 (30%), Positives = 130/256 (50%), Gaps = 10/256 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT++D++E + + L ++ A KS F+A +SHE+RTPL AIIGFS ++ Sbjct: 162 LTVYDVTELRNMQRLLDVERENAISADKLKSAFIANMSHEVRTPLNAIIGFSGLMAT--- 218 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 Y + I + +L +VND+ D+S+I++G +N + ++ + E L Sbjct: 219 -ATSEEEKKMYTDIISENNERLLRLVNDIFDLSQIDAGVLNFVYSEFDANDLLRELEGLF 277 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 + NE ++ A+ P ++ ++ + + Q+ N+L NA+ FT + G+I Sbjct: 278 GMRLNENPLVTLVCEAHLEPIMMHSEKQRIIQVLTNLLHNAMKFTKT-GEIRFGCRMEGT 336 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +EV V DTG+G+ E EK F ++ Q GTGLGL L++ +V G+F + Sbjct: 337 DEVYFYVSDTGIGIPKEEQEKIFSRFTKLDREMQ----GTGLGLTLSQTIVHNLGGRFGV 392 Query: 795 FSTPAKGTLIEIIFPL 810 S KG+ I PL Sbjct: 393 ESEVGKGSTFLFILPL 408 >gi|160884384|ref|ZP_02065387.1| hypothetical protein BACOVA_02362 [Bacteroides ovatus ATCC 8483] gi|156110123|gb|EDO11868.1| hypothetical protein BACOVA_02362 [Bacteroides ovatus ATCC 8483] Length = 660 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 82/247 (33%), Positives = 128/247 (51%), Gaps = 28/247 (11%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL-GNPRYIEYAN 628 +L AK+ AE+ + KS F++ +SHEIRTPL AI+GFS +I G + N EYA+ Sbjct: 419 ELRDAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLI----IGSVEQNNELKEYAD 474 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL--- 685 + + NL+L +++D+LDIS++ESGK+ +E L I+L N + + Sbjct: 475 IVQTNSNLLLQLISDVLDISRLESGKLQFKYEWCELVNHCQNMITL----TNRNKTMDVD 530 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL-RVRDT 744 I+ + D ++QI +N+L+NA+ FTP+GG I + ++ +L V DT Sbjct: 531 IKLQMPKEPYMLYTDPLRLQQIIINLLNNALKFTPAGGSITLDYEVDEEKQCMLFSVTDT 590 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK---------AMVDANM--GKFY 793 G G+ + E + F ++ Q GTGLGL + K +D N G + Sbjct: 591 GTGIPEDKQELVFQRFEKLNEFVQ----GTGLGLAICKLTIQYMGGDIWIDKNYKNGARF 646 Query: 794 IFSTPAK 800 IFS P K Sbjct: 647 IFSHPIK 653 >gi|117925597|ref|YP_866214.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609353|gb|ABK44808.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 844 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 120/221 (54%), Gaps = 8/221 (3%) Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 S+FLA +SHEIRTP+ AI G + + N + +Y ++ + +L IV+D+L Sbjct: 426 SEFLANMSHEIRTPMNAITGLTGLCLKTDL----NSKQRDYLTKVEGAARSLLRIVDDIL 481 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSV 704 D SK+E+G + L L+ +++ A+EK + + ++P L D + Sbjct: 482 DFSKVEAGCLVLEETDFELESVFDHLSTMISQKAHEKGLEVVYGVPRSVPTYLRGDPLRL 541 Query: 705 KQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFG 761 QI +N+ SNA+ FT G ++ ++ E+V+L VRD+G+GM+ +LE+ F Sbjct: 542 SQILINLASNAVKFTEEGDIVVQVAVDRYLEEQVVLHFSVRDSGMGMSQPQLERLFHSFT 601 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 Q +S R GTGLGL ++K +V+ GK ++ S+ +G+ Sbjct: 602 QADSSTTRRFGGTGLGLTISKRLVEMMQGKIWVESSLGQGS 642 >gi|315181473|gb|ADT88386.1| Sensory box sensor histidine kinase/response regulator VieS [Vibrio furnissii NCTC 11218] Length = 1203 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 76/255 (29%), Positives = 131/255 (51%), Gaps = 7/255 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 ++DIS K+++ L AK +A+K + FLA +SHE+RTP+ ++G E++K + Sbjct: 610 VVNDISAQKEQERHLRQAKNVAQKAVLSRERFLASMSHELRTPIAGMVGLLEMLKIRETN 669 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + R I N + S + + +VND+LD SK+E+ ++ L L + E + + Sbjct: 670 E--DTRLI--LNNVMSSAHHLHLLVNDILDFSKLEAQQLELDSVKCYLLHEIGELLRVHC 725 Query: 677 LYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A EK + ++ + ++ D ++QI N+LSNAI FT SG + + Sbjct: 726 TAAREKSLDFHVNWTPGRVKTVIVDSLRLRQIINNLLSNAIKFTQSG--FVSVDIEVTER 783 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++++ + D+G GM+ L+ PF Q ++ R GTGLGL + +V G I Sbjct: 784 DMVMNISDSGEGMSPEFLKTVFDPFVQADSTIARRYGGTGLGLAIVHDLVKVMKGDITID 843 Query: 796 STPAKGTLIEIIFPL 810 S KGT I++ P+ Sbjct: 844 SEQGKGTSIQVTIPI 858 >gi|60683572|ref|YP_213716.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] gi|60495006|emb|CAH09824.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] Length = 557 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 85/274 (31%), Positives = 128/274 (46%), Gaps = 35/274 (12%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT+HDI+ KQ + L+ AK+ AE KS FLA +SHEIRTPL AI+GFSE++ Sbjct: 162 LTVHDITSIKQTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNAIVGFSELLAAAN- 220 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 +Y + + L+L +VND+LD+SKIE+G + + V ++ Sbjct: 221 ---TEEEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVDIN---------- 267 Query: 676 QLYANEKRILIRTSFANNIP------------RILADLRSVKQIALNILSNAIHFTPSGG 723 L N+ L R +N P + D + Q+ N +SNAI FT G Sbjct: 268 -LLLNDLEQLFRMKIGSNSPVQIITESGLPSCMVHTDRNRIAQVVSNFVSNAIKFTTEGS 326 Query: 724 QIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 I + S+E + V DTG G++ +LE F ++ + + G GLGL + K Sbjct: 327 ---IRIGYQSSENGLRFYVSDTGSGISADKLEGVFDRFVRLQSDKN----GNGLGLSICK 379 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 +V+ G+ S KG+ P + P Sbjct: 380 TIVNKLGGEIGAESEVGKGSTFWFTLPEHSDIKP 413 >gi|37522196|ref|NP_925573.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35213196|dbj|BAC90568.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 624 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 68/178 (38%), Positives = 102/178 (57%), Gaps = 4/178 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +FLA +SHE+RTPL +IIGFS++++ R P + A I+R+G L +V+DL Sbjct: 244 KDEFLATLSHELRTPLNSIIGFSQLLRRGRMNPA---AIEQAAEAIERNGRLQAQLVDDL 300 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD S + G++ LH V L V ++ ++ EK +++RT A N+ D R + Sbjct: 301 LDASYMLRGQLQLHCCRVDLRAVVENVLTSMRALIREKGLVLRTRVAQNLEPFWGDPRRL 360 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 KQI N+++NAI FTP GG I + T+ ++ L VRDTGVG+ L + F Q Sbjct: 361 KQIVANLVANAIKFTPPGGMISVQLEATAG-QLQLTVRDTGVGIDAEFLPHVFEVFRQ 417 >gi|148654377|ref|YP_001274582.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148566487|gb|ABQ88632.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 556 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 92/369 (24%), Positives = 176/369 (47%), Gaps = 27/369 (7%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E L +++E ++DG+ I++ I + NRA+ +L G+ E+ + +P L +TP Sbjct: 164 EKQHLDALIENSADGVMILDSRWRITTFNRAMEQLTGWSREEAIGRPCAEVLAIHTPQGA 223 Query: 510 NHYLTEILSLDLRQTLEKITLG----STKEEKLLSL--RIIIKKLPFSSCYSLT--MHDI 561 N LT+ L RQ E + +T++ + L + R ++ P + + D+ Sbjct: 224 NLCLTDC-PLQ-RQPFEPNPVAEGWITTRDGRRLYIQSRYAAQRTPQGAFLGAIANVRDV 281 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E +KI E+ ++ F++ +SHE+RTP++ I G++E + Q Sbjct: 282 TE-----------QKI---EAEMQNTFISVISHELRTPVSIIKGYAETLARQD-AAWDAA 326 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 E I + + +N LL+ S++++ M L + V + A E Sbjct: 327 TLREGLMVIIEEADRLAQQINTLLEASRLQTDGMRLELSDWPVRPLVERVVERFMPQAGE 386 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 R +++P + AD + + N++SNAI ++P+GG + I+ S + I+ V Sbjct: 387 -RFTFEIDIPDDLPPVHADYERTRTVLENLVSNAIKYSPNGGLVRIA-ARVSGDYAIISV 444 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D G+G+ E +K + F ++ N + +G GLGL L++ +V+A G+ ++ S P +G Sbjct: 445 SDQGIGIPFEEQKKLFRRFYRVDNRLRRETQGAGLGLFLSRVIVEAQGGRIWVDSRPGRG 504 Query: 802 TLIEIIFPL 810 + PL Sbjct: 505 SRFSFTVPL 513 >gi|315182576|gb|ADT89489.1| hypothetical protein vfu_B01304 [Vibrio furnissii NCTC 11218] Length = 886 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 89/264 (33%), Positives = 137/264 (51%), Gaps = 8/264 (3%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 FS H I E K + +L HAK+ A + KS FLA +SHEIRTPL IIG +E+ Sbjct: 355 FSDFVGSLNHIILELKAHEERLIHAKEEAIAANRAKSSFLANMSHEIRTPLNGIIGMTEI 414 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + N + + ID S +L ++ND+LD+SKIE+G + L+ + E V Sbjct: 415 LASSGL----NVNQQDILDDIDTSSQSLLILLNDILDLSKIEAGSLTLNPNAFNFAEMVY 470 Query: 670 EAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 + ++LV + A + I + +P ++AD VKQI +N+LSNA+ FT G + + Sbjct: 471 DTVNLVNVKAISQHIELAIQLDPELPVMVVADEYRVKQILMNLLSNAVKFTQD-GYVNVE 529 Query: 729 TTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + S + ++R V DTG G+ +L PF Q S R GTGLGL + + +++ Sbjct: 530 VNYVSQDTPLIRCSVTDTGKGIDKDKLSTIFDPFTQEDGSITRRFGGTGLGLAICRQLLE 589 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPL 810 G + ST G+ E P+ Sbjct: 590 LMDGSIQVHSTKDLGSQFEFTIPV 613 >gi|298387781|ref|ZP_06997331.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298259386|gb|EFI02260.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 419 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 76/256 (29%), Positives = 130/256 (50%), Gaps = 10/256 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT++D++E + + L ++ A KS F+A +SHE+RTPL AI+GFS ++ Sbjct: 162 LTVYDVTELRNMQRLLDVERENAISADKLKSAFIANMSHEVRTPLNAIVGFSGLMAT--- 218 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 Y + I + +L +VND+ D+S+I++G +N + ++ + E L Sbjct: 219 -ATSEEEKKMYTDIISENNERLLRLVNDIFDLSQIDAGVLNFVYSEFDANDLLRELEGLF 277 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 + NE ++ A+ P ++ ++ + + Q+ N+L NA+ FT + G+I Sbjct: 278 GMRLNENPLVALVCEAHLEPIMMHSEKQRIIQVLTNLLHNAMKFTKT-GEIRFGCRMEGT 336 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +EV V DTG+G+ E EK F ++ Q GTGLGL L++ +V G+F + Sbjct: 337 DEVYFYVSDTGIGIPKEEQEKIFSRFTKLDREMQ----GTGLGLTLSQTIVHNFGGRFGV 392 Query: 795 FSTPAKGTLIEIIFPL 810 S KG+ I PL Sbjct: 393 ESEVGKGSTFWFILPL 408 >gi|94265927|ref|ZP_01289653.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93453513|gb|EAT03921.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 399 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 126/242 (52%), Gaps = 16/242 (6%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A+ + KS+FLA +SHEIRTP+ +IG + ++ + + YA I SG + Sbjct: 159 AQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLAEDL----SDEQRSYAQIIMSSGQAL 214 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L+++N +LD SKIE+G++ L P S E V E L++ A + I + + + +IP I Sbjct: 215 LELINQILDFSKIEAGRLELDHRPFSPRELVEEVAVLLRPQAAAQNIALTSEVSPDIPAI 274 Query: 698 L-ADLRSVKQIALNILSNAIHFTPSGGQII--------ISTTHTSNEEVILRVRDTGVGM 748 + D ++Q+ LN++ NAI FT GG + + H S + V+D+G+G+ Sbjct: 275 VEGDPVRLRQVLLNLVGNAIKFTEVGGVAMELSPAPADPAAPHCS---LHFAVKDSGIGI 331 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L+ + F Q+ S + GTGLGL + + +V+ G+ + S KG+ Sbjct: 332 PVEKLDLLFQRFQQVDGSTCRKYGGTGLGLAICRRLVELMGGEIGVESEEGKGSTFWFTV 391 Query: 809 PL 810 PL Sbjct: 392 PL 393 >gi|77462106|ref|YP_351610.1| sensory transduction histidine kinase [Rhodobacter sphaeroides 2.4.1] gi|77386524|gb|ABA77709.1| Probable sensory transduction histidine kinase [Rhodobacter sphaeroides 2.4.1] Length = 855 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 105/380 (27%), Positives = 176/380 (46%), Gaps = 43/380 (11%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE-----DILRKPFTVFLE-QNTP 506 +L +I ++D I + + ++ NRA +FG+ E D + F L+ + Sbjct: 229 RLEAIFRISADAILVTDWSARVIDCNRAALAIFGHQRERLAGADAMELLFPAELQGRQRM 288 Query: 507 SVMNHYLTEILSLD--LRQTLEKITLGSTK---EEKLLSLRI----IIKKLPFSSCYSLT 557 V++ +D LR LE + ++ E L + R+ II L Sbjct: 289 RVVDALRNSDPRIDGPLRLELEAVHADGSRFPVEVSLAAARVEGEDIIVAL--------- 339 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 M DIS ++ + +L+ A+ A K+DFLA +SHE+RTPL + G E++ P Sbjct: 340 MRDISARRRAERELTEARDRALAGEQTKADFLAVMSHEMRTPLNGLAGSLELLAQT---P 396 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 L +PR E + + S ++LD VN +LDI++ E+ LD + + I+ Sbjct: 397 L-DPRQRELVSVLRASAEILLDHVNSVLDIARSEARPSVAEMVDFDLDRLIEDCIANQSG 455 Query: 678 YA-------NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 +A + + + N P+ L +Q+ LN+L+NA+ FT +G I+ S Sbjct: 456 FAAVVGNRIDHRPLTGPVGILNGEPQRL------RQVLLNLLNNAVKFTRNGRIIVESEV 509 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 ++ E+ RV DTG+G+ LEK F + S + R GTGLGL +A+ + G Sbjct: 510 QGADVEI--RVLDTGIGIAPENLEKVFDDFVTLDASYERRSGGTGLGLGIARRLARIMGG 567 Query: 791 KFYIFSTPAKGTLIEIIFPL 810 + STP +G+ + PL Sbjct: 568 DLTVQSTPGRGSRFTLRLPL 587 >gi|51245645|ref|YP_065529.1| two-component system sensory/regulatory protein [Desulfotalea psychrophila LSv54] gi|50876682|emb|CAG36522.1| related to two-component system sensory/regulatory protein (hybrid family) [Desulfotalea psychrophila LSv54] Length = 1358 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/257 (28%), Positives = 137/257 (53%), Gaps = 14/257 (5%) Query: 576 KIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 K+ E E+S +KS+FLA +SHE+RTPL +I+ S+++ + G L + + +E A I S Sbjct: 663 KVDELETSGKYKSEFLANMSHELRTPLNSILILSQLLSTNKAGNLSD-KQVESAGAIHSS 721 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +L+++ND+LD+SK+E+GK+ L E + ++ L + A++K I + Sbjct: 722 GAELLNLINDILDLSKVEAGKVELIIEEIPFKRIEADLHRLYKDLAHDKGISFDITLNPQ 781 Query: 694 IPRIL-ADLRSVKQIALNILSNAIHFT----------PSGGQIIISTTHTSNEEVILRVR 742 +P+ L D + ++Q+ N+++N+ FT P+ + +++T + ++ V+ Sbjct: 782 LPQTLKTDSQRLQQVLRNLITNSFKFTLQGSVSLEIEPAPAEQLLNTRLEGQKAIVFAVK 841 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D G+G+ + + + F Q+ S + GTGLGL ++K + G + S +G+ Sbjct: 842 DDGIGIPQAQQQNIFEAFQQVDGSTSRKYGGTGLGLSISKELTKLLGGFITLSSVEDEGS 901 Query: 803 LIEIIFPLYDTSHPHDC 819 I PL + + D Sbjct: 902 TFRITLPLNNQAIATDT 918 >gi|330810584|ref|YP_004355046.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378692|gb|AEA70042.1| putative Histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 1131 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 73/266 (27%), Positives = 138/266 (51%), Gaps = 8/266 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L M +I + L AK+ +E ++ KS ++ +SHE+RTPL +I+GF+++++ Sbjct: 652 LLMQEIEAHRLTDQALQDAKEASEAANAAKSRYVTGLSHELRTPLNSILGFTQILQRDAA 711 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P ++ + I RSG+ +L +++ LLD++KIE+GK+ L + E + + + Sbjct: 712 MP---EQHQDALATILRSGSHLLSLIDGLLDVAKIEAGKLRLEATEIPFPELIHDLELMF 768 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A +K + R +P ++ D + V+QI +N+L NA++FT S G++ + ++ Sbjct: 769 TPQARDKGLRFRLELIGKMPAVVRGDEKRVRQILINLLGNAVNFTDS-GEVCLRVSYM-R 826 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E + DTG+G+ +E+ +PF + +Q +G GLGL + + + G+ + Sbjct: 827 ETATFDIIDTGIGIDPEHIERIFQPFERGDLMRQ--DKGVGLGLTITRMLTSLMGGELQV 884 Query: 795 FSTPAKGTLIEIIFPLYDTSHPHDCI 820 S KGT ++ L P I Sbjct: 885 KSQQDKGTCFQVRLFLSQVRVPQAVI 910 >gi|330844471|ref|XP_003294148.1| hypothetical protein DICPUDRAFT_51346 [Dictyostelium purpureum] gi|325075445|gb|EGC29332.1| hypothetical protein DICPUDRAFT_51346 [Dictyostelium purpureum] Length = 952 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 84/259 (32%), Positives = 140/259 (54%), Gaps = 17/259 (6%) Query: 558 MHDISEWKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + + SE +Q++N +L A+ A + KS FLA +SHEIRTPL +IG +E++ + Sbjct: 264 LQNKSELEQKRNLELMEARDQAVAATKIKSQFLATISHEIRTPLNGVIGMAEML--LKTS 321 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAIS 673 PL ++ + A I SG L+L I +D+LD SKIE+ ++ L F+ + E +++ I Sbjct: 322 PLNTEQH-DIAETIFGSGELLLSITSDILDFSKIEASRLELEMIEFDFIGCLEGIAKTIG 380 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + N K I I T F +IP R++ D + QI LN+ +NA+ +T G II + Sbjct: 381 ---VSINNKPIEIVTLFDPDIPHRLVGDPNRLVQIMLNMGTNAVKYTEK-GHIIFKVSVL 436 Query: 733 SNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 S + +V + + D+G+G+ + + +PF QI S + G+GLGL ++ + Sbjct: 437 SRKHNWCKVKIGIEDSGIGIKEEQRKHLFEPFHQIDASTTRKYGGSGLGLAISSKLAKLM 496 Query: 789 MGKFYI-FSTPAKGTLIEI 806 G + STP G+L + Sbjct: 497 GGSVLLEKSTPGVGSLFSV 515 >gi|320161971|ref|YP_004175196.1| putative two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319995825|dbj|BAJ64596.1| putative two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 1349 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 127/234 (54%), Gaps = 9/234 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+F++ V+HE++ P+T++ G++E++ GP+ N + N I + + +V+DL Sbjct: 1114 KSEFVSFVAHELKNPMTSVKGYTELLAAGAVGPV-NEAQANFLNTIRANIERMNTLVSDL 1172 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 D+SKIE G++ L F+ VSL E V + + +EK+ + + ++P AD + Sbjct: 1173 NDLSKIEVGRLRLEFKAVSLAEVVEGVVRSTRRQIDEKKQTLEIAIPADLPPAWADRTRL 1232 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSN--------EEVILRVRDTGVGMTNYELEKA 756 +Q+ +N++SNA +TP GG I+++ N E + + V+D G+G++ + +K Sbjct: 1233 EQVLVNLVSNAHKYTPQGGHILVAAERAKNVWNPEGVPEVIHVWVKDDGIGISEEDQKKI 1292 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F + + + GTGLGL + K++V+ G + S KGT P+ Sbjct: 1293 FQKFFRSEDPKTREVPGTGLGLNITKSLVEMQGGNIWFESEFRKGTTFHFTVPI 1346 >gi|218676135|ref|YP_002394954.1| Signal transduction histidine kinase [Vibrio splendidus LGP32] gi|218324403|emb|CAV25798.1| Signal transduction histidine kinase [Vibrio splendidus LGP32] Length = 861 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 80/264 (30%), Positives = 138/264 (52%), Gaps = 11/264 (4%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI++ + + + A++ AE +S ++DFLA++SHEIRTPL I+G S+++K + Sbjct: 457 QDITKLIEAERQADRAREEAEHLASVRADFLAKMSHEIRTPLNGILGVSQLLKR----SI 512 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + + + S +L ++ND+LD SKIE G+ N+ + L E V+ S+ + Sbjct: 513 HDEDNRDQVDVLCHSAEHLLAVLNDILDFSKIEQGQFNIQKKDFLLGELVNTLDSIYRPL 572 Query: 679 ANEKRI--LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI----IISTTHT 732 +K + I ++I +I D + QI N+LSNA+ FT G I S +T Sbjct: 573 CEDKSVEFTIVNHLIDDI-KIHTDQVRLNQIMFNLLSNALKFTHQGSISVSFEIESILNT 631 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 +I+RV+D+G+G+ +++ +PF Q + G+GLGL + K +VD G Sbjct: 632 DFASLIVRVKDSGIGIDESKIDAIFEPFVQAEETTTREYGGSGLGLTIVKNLVDMLEGDI 691 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHP 816 + S +G+ I P+ S P Sbjct: 692 QVRSVKDQGSEFIIEIPVELHSKP 715 >gi|119962088|ref|YP_948935.1| two-component sensor histidine kinase [Arthrobacter aurescens TC1] gi|119948947|gb|ABM07858.1| putative two-component sensor histidine kinase domains protein [Arthrobacter aurescens TC1] Length = 547 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 130/231 (56%), Gaps = 9/231 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVND 643 K+DFLA V+HE+RTPLT+I + ++I++ GP+ P I + + I R+ + + ++ D Sbjct: 318 KTDFLATVNHELRTPLTSITAYLDMIQDGSGGPV--PEGIRKMLDVIARNSDRLRRLIED 375 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 +L +S ++ G NL +PV +D+ + ++ ++ A + + + + A + AD Sbjct: 376 MLTVS-MQDGS-NLDLKPVDIDKLLQVVVATLRPLAESRHVSVSFTEATEDIEVTADEAK 433 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKP 759 ++Q+ NI++NAI FTP GG + I++ ++ E ++R+ D G+G+ ++L + Sbjct: 434 LEQVFTNIVANAIKFTPEGGSVGITSAMSATENGRLSALVRIADNGLGIPEHDLPHILTR 493 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F + N+ G+GLGL +A ++ +MG+ ST GT + + P+ Sbjct: 494 FYRASNATSAAVPGSGLGLAIANDIIGRHMGRMVFDSTLGSGTTVSVELPV 544 >gi|310817666|ref|YP_003950024.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309390738|gb|ADO68197.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 1142 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 126/223 (56%), Gaps = 6/223 (2%) Query: 571 LSHAKKIAEKESSHKS--DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 + +A+ +AE ++++++ +FLA +SHE+RTPLTA++G++++++ +R P + + + Sbjct: 748 IENARLMAESQAANRAKDEFLAVMSHELRTPLTAVLGWTQMLRTRRNDPAIQEKGL---D 804 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+R+ + ++ D+LD+S+I +GK+ LH V L V A+ +V+ A +K + + Sbjct: 805 VIERNARSLAQLIEDVLDVSRILTGKLALHQRAVDLASVVQAAVEVVRPRAEQKGVTLVM 864 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + D ++Q+ N+L NA+ FTPSGG++ + N E + ++D+G G+ Sbjct: 865 EAGVGGGMVTGDPGRLQQVFWNLLVNAVKFTPSGGRVEVRVER-GNAEWRVWIKDSGQGI 923 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 L + F Q S G GLGL + + +V+ + G+ Sbjct: 924 RVEALPHLFERFWQADGSSTREHGGLGLGLAIVRHLVELHGGE 966 >gi|94501557|ref|ZP_01308075.1| sensory transduction histidine kinase [Oceanobacter sp. RED65] gi|94426375|gb|EAT11365.1| sensory transduction histidine kinase [Oceanobacter sp. RED65] Length = 737 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 131/252 (51%), Gaps = 5/252 (1%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D+ + K+ ++L A+ AE+ + KS FLA +SHE+RTP+ ++G ++++ + Sbjct: 341 QDVDQRKRAISELEQARHAAEEANRAKSVFLASMSHELRTPMNGVLGMLQLMEGSVKQEV 400 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N R ++ A+ S +L I++D+LD S+IE+GK+ L S+ E +S L + Sbjct: 401 -NKRRLQIAS---NSAKNLLTILDDILDFSRIEAGKLVLDSTEFSMSELLSSLQELFNIE 456 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +KR I D ++Q+ +N++ NA FT +G QII+ N ++ Sbjct: 457 VEKKRSTIHIENLLQHDMYWGDEGRIRQMLINLIGNANKFTQNG-QIIVRAQSGENRDLK 515 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 L V+DTG+G+ + L + + F Q +S + G+GLGL + K + + G + S Sbjct: 516 LSVQDTGIGIPSDRLGQIFESFTQADSSTTRQYGGSGLGLTICKRLSELMNGTISVISEQ 575 Query: 799 AKGTLIEIIFPL 810 KG+ + PL Sbjct: 576 GKGSEFTLHLPL 587 >gi|109898976|ref|YP_662231.1| GAF sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] gi|109701257|gb|ABG41177.1| GAF sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] Length = 662 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 80/264 (30%), Positives = 128/264 (48%), Gaps = 12/264 (4%) Query: 547 KLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 +L C L DI+E + +L H K +S FLA +SHEIRTP+ ++ Sbjct: 249 ELDGGKCVRLVGAFQDITEQVNSREQLEHRHKELSLALEARSLFLANMSHEIRTPINGVL 308 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G +++ L N + + S +L I+ND+LD +KI+SGK+ L P+ L Sbjct: 309 GMLQILDAS---SLDNEQR-RFLGLAKDSATSLLGIINDILDFTKIDSGKLALETVPIDL 364 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG 723 ++ ++ + + +A EK I + N I+ D ++QI N+LSNA+ FT G Sbjct: 365 NQVLNNCVDIFNPHAKEKSIQLVKQLENTQGASIITDPTRLRQICANLLSNALKFTHQ-G 423 Query: 724 QIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 Q+ I+T T + + V+D+GVGMT + PF Q S + GTGLGL Sbjct: 424 QVNIATELTLLKKGKATLTIFVKDSGVGMTQEQQALLFSPFSQADVSTTRKFGGTGLGLS 483 Query: 780 LAKAMVDANMGKFYIFSTPAKGTL 803 + + + G + S KG++ Sbjct: 484 ITRKLCQLMSGDVSVKSVLNKGSV 507 >gi|294139125|ref|YP_003555103.1| sensory box histidine kinase/response regulator [Shewanella violacea DSS12] gi|293325594|dbj|BAJ00325.1| sensory box histidine kinase/response regulator [Shewanella violacea DSS12] Length = 1235 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 80/253 (31%), Positives = 129/253 (50%), Gaps = 14/253 (5%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ K + L AK+ AE + KS+FLA +SHEIRTP+ AIIG ++ + Sbjct: 694 THKDITRHKSNEVALLEAKQDAESANLSKSEFLANMSHEIRTPMNAIIGMLQLAQRTELT 753 Query: 617 PLGNPRYIEYANYIDRSG---NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + +Y+D++G +L I+ND+LD SKIE+GK+ L LD+ + A+ Sbjct: 754 A-------KQEDYLDKAGFSAQSLLRIINDILDFSKIEAGKLELEKVAFPLDKVLDHALD 806 Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH 731 L L + +K + + IL D + Q+ +N+LSNA+ FT +G ++ Sbjct: 807 LNALKSQQKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQTGEIELGCEDVG 866 Query: 732 TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + + L+ VRDTG+G++ + F Q S + GTGLGL ++K +V Sbjct: 867 ERDHRITLKFWVRDTGIGISKEQQASLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMG 926 Query: 790 GKFYIFSTPAKGT 802 G+ + S G+ Sbjct: 927 GQMQVQSEMGVGS 939 >gi|148975382|ref|ZP_01812306.1| hypothetical two-component sensor [Vibrionales bacterium SWAT-3] gi|145965306|gb|EDK30556.1| hypothetical two-component sensor [Vibrionales bacterium SWAT-3] Length = 796 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 81/255 (31%), Positives = 129/255 (50%), Gaps = 20/255 (7%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 I +Q+ +L AK+ AE + +KS+FLA +SHEIRTP+ IIG S ++ + Sbjct: 217 QSIERIRQQYQELIKAKETAEVANRNKSEFLANMSHEIRTPMNGIIGLSSLLSE-----M 271 Query: 619 GNPR-YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 P+ EY N ++ S +LD++ND+LD SKIE+G++ L EP+ + ++ S ++ Sbjct: 272 DMPKEQKEYVNMLNTSSLTLLDLINDILDYSKIEAGRLELQQEPMKMMGIAADVESTFRV 331 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A +K + + IP ++ D ++Q+ N++ NAI FT G T E+ Sbjct: 332 KAEQKGLRFQLEIDPKIPTMVIGDGTQLRQVLNNLVGNAIKFTERGH----VTLSLRLEK 387 Query: 737 VI-----LRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 VI LRVR D+G+G+ + + F Q S GTGLGL + +V Sbjct: 388 VIEPEQKLRVRFEVADSGIGIAEDKQKSVFDKFQQADGSTTRIYGGTGLGLTICDKIVTL 447 Query: 788 NMGKFYIFSTPAKGT 802 K + S KG+ Sbjct: 448 MGSKLELTSIEGKGS 462 >gi|114569266|ref|YP_755946.1| histidine kinase [Maricaulis maris MCS10] gi|114339728|gb|ABI65008.1| histidine kinase [Maricaulis maris MCS10] Length = 553 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 123/253 (48%), Gaps = 9/253 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A+ A S KSDFLA +SHEIRTPL ++G +++++ + E+ Sbjct: 146 QLGRARLEALAASKAKSDFLATMSHEIRTPLNGVLGVTQLLQATTL----DAEQAEFVRV 201 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT- 688 ID SG ++L ++ND+LD+SKIE+GKM L P V +A +L A EK I Sbjct: 202 IDDSGKILLRLLNDILDLSKIEAGKMELEVTPFRPSTLVRDAQTLWSAQAREKGIAFSIE 261 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILRVR--DTG 745 + + + D +KQ+ N++SN I FT SG + + ++RV DTG Sbjct: 262 ADCDEDAQYEGDPVRIKQLLFNLISNGIKFTQSGSVAVRMQFLPLGRRRNVMRVEVVDTG 321 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 G+ + L + F Q + GTGLGL + + + + G + S P +G+ Sbjct: 322 CGIPDTALRELFSAFKQADVATNRLHGGTGLGLAICRRLAELMGGSVDVTSRPGEGSKFW 381 Query: 806 IIFPLYD-TSHPH 817 PL T+ P Sbjct: 382 FDIPLKSVTTAPQ 394 >gi|261856180|ref|YP_003263463.1| integral membrane sensor hybrid histidine kinase [Halothiobacillus neapolitanus c2] gi|261836649|gb|ACX96416.1| integral membrane sensor hybrid histidine kinase [Halothiobacillus neapolitanus c2] Length = 1178 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 76/263 (28%), Positives = 134/263 (50%), Gaps = 7/263 (2%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L M++I + +L A K AE + KS ++A +SHE+RTPL I+G+++++++ Sbjct: 653 LLMNEIEAHLKTDVQLQKAIKAAESANQAKSRYMAGISHELRTPLNCILGYAQIVEHD-- 710 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P + E I RSG ++ ++N LLD++KIE+GK+ + E V + V++ + Sbjct: 711 -PAVPRQRREEMKVIRRSGEHLISLINGLLDMAKIEAGKLTIEPEEVHFPQFVAQLADMF 769 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 +L A EKRI + +P ++ D + + QI +NIL NAI FT G + ++ S Sbjct: 770 RLQAQEKRIQFNFEVVDELPPVVRVDKKRLGQILINILGNAIKFTER-GHVTFRISYRS- 827 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E + DTG+G+T + ++ PF + N+ GLGL +A + G+ + Sbjct: 828 ELARFEIEDTGIGITESDRKRIFLPFERGSNATG-NAASAGLGLTIASMLATLMGGELTV 886 Query: 795 FSTPAKGTLIEIIFPLYDTSHPH 817 G+ ++ L +P Sbjct: 887 HEREGGGSRFQLRLLLTAVRNPR 909 >gi|148554082|ref|YP_001261664.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1] gi|148499272|gb|ABQ67526.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1] Length = 829 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 96/373 (25%), Positives = 177/373 (47%), Gaps = 31/373 (8%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +I ++ +DGI +IN G I + N A ++FGY E +LR+ + ++ P N E Sbjct: 235 AIFDSATDGIILINPSGSIETINHAAERMFGYSAEQLLRRDISTLVD-IAPG--NGAFLE 291 Query: 516 ILSLDLRQTLEKITL----GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 L + Q L+K L G ++ + + + +++ +P +H ++ + + Sbjct: 292 RLGIRDGQ-LQKTELIDLTGRDRQGEPVPVDVVLGTMPLPDG----IHIVAALRDAAGR- 345 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG--PLGNPRYIEYANY 629 K+I K DF++ VSHE+RTPLT+++G ++++ G P R E A Sbjct: 346 ---KEI----DRLKDDFISTVSHELRTPLTSVVGSLTLLRSGAAGQLPAEAQRLAEIAET 398 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + ++ ++ND+LDI +I G+M + + L + +++A +Q A+ + I I T Sbjct: 399 ---NSQRLIRLINDILDIDQIRKGRMAFEYAVIDLRDVMTKAAHAMQGLADRRSIRIETL 455 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 + AD + Q+A N+LSNA+ F+P + ++ VI ++ D+G G+ Sbjct: 456 MPSTPVMACADADRLVQVAGNLLSNAVKFSPEEATVRFELIEGRDDHVI-QITDSGPGIP 514 Query: 750 NYELEKAMKPF--GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 F G P+ Q I GTGLGL +++ +V ++ G+ + G Sbjct: 515 AEFANNIFHRFARGSQPSRQII--AGTGLGLAISREIVRSHGGEISFENRAEGGARFAFS 572 Query: 808 FPLYDTSHPHDCI 820 P DT+ + I Sbjct: 573 IP-RDTTQASEAI 584 >gi|265767426|ref|ZP_06095092.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|263252731|gb|EEZ24243.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] Length = 556 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 85/274 (31%), Positives = 128/274 (46%), Gaps = 35/274 (12%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT+HDI+ KQ + L+ AK+ AE KS FLA +SHEIRTPL AI+GFSE++ Sbjct: 161 LTVHDITSIKQTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNAIVGFSELLAAAN- 219 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 +Y + + L+L +VND+LD+SKIE+G + + V ++ Sbjct: 220 ---TEEEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVDIN---------- 266 Query: 676 QLYANEKRILIRTSFANNIP------------RILADLRSVKQIALNILSNAIHFTPSGG 723 L N+ L R +N P + D + Q+ N +SNAI FT G Sbjct: 267 -LLLNDLEQLFRMKIGSNSPVQIITEPGLSSCMVHTDRNRIAQVVSNFVSNAIKFTTEGS 325 Query: 724 QIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 I + S+E + V DTG G++ +LE F ++ + + G GLGL + K Sbjct: 326 ---IRIGYQSSENGLRFYVSDTGSGISADKLEGVFDRFVRLQSDKN----GNGLGLSICK 378 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 +V+ G+ S KG+ P + P Sbjct: 379 TIVNKLGGEIGAESEVGKGSTFWFTLPEHSDIKP 412 >gi|237723230|ref|ZP_04553711.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|293372791|ref|ZP_06619172.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|229447752|gb|EEO53543.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|292632300|gb|EFF50897.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 660 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 133/256 (51%), Gaps = 14/256 (5%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + D++E + +L A+ AE+ KS FLA +SHEIRTPL AI+GFS+++ Sbjct: 265 IRVDDVTERQHMIGELEKARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMVTE- 323 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE-AISL 674 E+ I+ + L+L ++ND+LD+SKIE+G + L +E L +E A S+ Sbjct: 324 ---DQEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVELKYENFDLAVYFNELAASM 380 Query: 675 VQLYAN-EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + N + R++ + R+ D + QI N ++NAI +T G I Sbjct: 381 HRRVVNPQVRLVPVNPYEACTVRL--DKNRLAQILTNFVTNAIKYTSKG--TIEMGYEKI 436 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +E + L VRDTG+G+ + +K F ++ Q GTGLGL + KA+V+A G+ Sbjct: 437 DENIRLYVRDTGIGIPEDKKDKVFHRFEKLDEFAQ----GTGLGLSICKAIVEACRGEIG 492 Query: 794 IFSTPAKGTLIEIIFP 809 S KG+L + P Sbjct: 493 FESEFDKGSLFWAVLP 508 >gi|78188414|ref|YP_378752.1| multi-sensor signal transduction histidine kinase [Chlorobium chlorochromatii CaD3] gi|78170613|gb|ABB27709.1| multi-sensor signal transduction histidine kinase [Chlorobium chlorochromatii CaD3] Length = 595 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 122/226 (53%), Gaps = 5/226 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY-IEYANYIDRSGNLVLDIVND 643 + DF+A VSHE+RTPLT I G++E + G L +P + + + I ++ + +VND Sbjct: 367 RRDFVASVSHELRTPLTVISGYTETLLE---GALHDPAHAVPFLKTILQASQQLTALVND 423 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 +LD+S+IESG ++ F V + V +A+ ++ +K+I + +P I AD R Sbjct: 424 VLDLSRIESGAIDYQFTSVDIGGVVRKAVEFLKPSLEKKQIRLDVRITAGLPTIYADARY 483 Query: 704 VKQIALNILSNAIHFT-PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 + + N++ NAI+ G+I IS + E V L V D GVG+ +L++ + F + Sbjct: 484 LDIVIRNLVDNAINAVDERNGRIRISAFAMNKEVVRLEVEDNGVGIAKADLDRIFERFYR 543 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + + GTGLGL + K +V A+ G + S G++ ++ Sbjct: 544 VDKGRSRQYGGTGLGLSIVKHIVLAHQGDIVVNSKLNHGSVFSVLL 589 >gi|326794409|ref|YP_004312229.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] gi|326545173|gb|ADZ90393.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] Length = 939 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 131/245 (53%), Gaps = 12/245 (4%) Query: 566 QEKNKLSH-AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +EK+ H A K A + + KS FLA +SHEIRTPL AI+G+ ++++ + + + Sbjct: 272 EEKSAQLHIANKEATESNRLKSQFLANISHEIRTPLNAIMGYIQILQKDQL----DKQQR 327 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA---ISLVQLYANE 681 Y + I +S +L I++D+LD SKIE+GK++L +++ + V E +S L Sbjct: 328 LYMDTIAQSTTNLLTIISDILDFSKIEAGKLSLDLTDINIRDIVDEVYQILSSANLVNAS 387 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL 739 K + + F ++P ++ D ++Q+ N++ NAI FT G + + SN + L Sbjct: 388 KELDLIPEFDLDVPTWVIGDPVRIRQVLTNLIGNAIKFTHEGSVRTTVKILEKSNSSLKL 447 Query: 740 --RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 ++ DTGVG+ +L+ KPF Q+ S + GTGLGL + K +V G + S Sbjct: 448 SFQIIDTGVGIPENKLDNLFKPFSQVDTSTTRKFGGTGLGLVITKKLVKQMGGNVEVSSE 507 Query: 798 PAKGT 802 G+ Sbjct: 508 HGIGS 512 >gi|324112762|gb|EGC06738.1| hsp90-like protein [Escherichia fergusonii B253] Length = 608 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 89/361 (24%), Positives = 172/361 (47%), Gaps = 34/361 (9%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 I+E +D + I+R+G +++ N A + GY ++++ +P+ NT H+ + + Sbjct: 267 IIENAADAVIAIDRQGDVITMNPAAEAITGYKRQELVGQPYATLFA-NT-----HFYSPV 320 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS------LTMHDISEWKQEKNK 570 L L +E + L + + ++ I + + D++ K+ + + Sbjct: 321 LD-TLAHGIEHMALEISYPGRDRTIEISATTSRIHDGHGEMIGALVIFSDLTARKESQRR 379 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L+ +++A + +A V+HE+R PLTAI G+ ++I+ Q P + EY + + Sbjct: 380 LAQTERLATL-----GELMAGVAHEVRNPLTAIRGYVQIIRQQT----PQPEHQEYLSIV 430 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + + ++ LLD S+ + ++ V L+ + E + L Q + RI T Sbjct: 431 LNEIDSINKVIQQLLDFSRPRKSQ----WQQVYLNALIEETLILAQTSGVQARIDFITEL 486 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-THTSNEEVILRVRDTGVGMT 749 A ++ I+AD +KQ+ LN+L NA+ + G+I I T +T+N++ I + D G G+ Sbjct: 487 APSLTAIVADRELLKQVILNMLINAVQAITARGEIRIRTWMYTANQQAI-TIEDNGCGID 545 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K PF + GTGLGL L++ +++A+ G + S P G +I P Sbjct: 546 LSLQRKIFDPFF------TTKASGTGLGLALSQRIINAHQGDIRVASLPGCGATFTLILP 599 Query: 810 L 810 + Sbjct: 600 I 600 >gi|27468286|ref|NP_764923.1| alkaline phosphatase synthesis sensor protein [Staphylococcus epidermidis ATCC 12228] gi|251811086|ref|ZP_04825559.1| possible histidine kinase [Staphylococcus epidermidis BCM-HMP0060] gi|282875887|ref|ZP_06284754.1| sensor histidine kinase/response regulator [Staphylococcus epidermidis SK135] gi|293366361|ref|ZP_06613040.1| sensor histidine kinase PhoR [Staphylococcus epidermidis M23864:W2(grey)] gi|27315832|gb|AAO04967.1|AE016748_201 alkaline phosphatase synthesis sensor protein [Staphylococcus epidermidis ATCC 12228] gi|251805383|gb|EES58040.1| possible histidine kinase [Staphylococcus epidermidis BCM-HMP0060] gi|281294912|gb|EFA87439.1| sensor histidine kinase/response regulator [Staphylococcus epidermidis SK135] gi|291319486|gb|EFE59853.1| sensor histidine kinase PhoR [Staphylococcus epidermidis M23864:W2(grey)] gi|329737291|gb|EGG73545.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Staphylococcus epidermidis VCU028] Length = 565 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 94/364 (25%), Positives = 185/364 (50%), Gaps = 27/364 (7%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 +I+ +L + LE + +I++ G I+ N A ++F P + + K + F++ + Sbjct: 223 KIQSNRLKTTLENIPSSVLMIDKHGEIVVANHAYYQVFN-PDQMVENKSYIGFIDDSIEK 281 Query: 508 -VMNHYLTEILSLDLRQTLE-KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 ++ + TE + + + LE I TK + + I+ K + +HDI+ + Sbjct: 282 LIIESFRTEKV---IYEQLEVAINNVHTKYFDVSCIPILTKSKKNLQGMVVVLHDITNLQ 338 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + +N + +F+A VSHE++TP+T+I GF+E + G + + ++ Sbjct: 339 KLENL--------------RREFVANVSHELKTPITSIKGFAETLIE---GAKNDEQSLD 381 Query: 626 -YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + N I + N + +V DLLD+S IE K L ++L E I +Q A KRI Sbjct: 382 MFLNIILKESNRIESLVTDLLDLSHIEQQK-ELEINYMNLSELAINIIDNLQTQAYNKRI 440 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 I++ ++ I A + Q+ N+LSNAI+++ ++I+ N+ V L ++D Sbjct: 441 KIQSEIEKDVI-IEAHENKIAQVITNLLSNAINYSSEDNKVIVRVYRNDNK-VYLEIQDY 498 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + ++ + F ++ ++ GTGLGL + K +V+A+ G+ + S P KG++ Sbjct: 499 GIGISETDQKRIFERFYRVDKARSRDSGGTGLGLSITKHIVEAHNGRIDVKSAPGKGSIF 558 Query: 805 EIIF 808 +++F Sbjct: 559 KVLF 562 >gi|260770053|ref|ZP_05878986.1| hypothetical protein VFA_003117 [Vibrio furnissii CIP 102972] gi|260615391|gb|EEX40577.1| hypothetical protein VFA_003117 [Vibrio furnissii CIP 102972] Length = 868 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 89/264 (33%), Positives = 137/264 (51%), Gaps = 8/264 (3%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 FS H I E K + +L HAK+ A + KS FLA +SHEIRTPL IIG +E+ Sbjct: 337 FSDFVGSLNHIILELKAHEERLIHAKEEAIAANRAKSSFLANMSHEIRTPLNGIIGMTEI 396 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + N + + ID S +L ++ND+LD+SKIE+G + L+ + E V Sbjct: 397 LASSGL----NVNQQDILDDIDTSSQSLLILLNDILDLSKIEAGSLTLNPNAFNFAEMVY 452 Query: 670 EAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 + ++LV + A + I + +P ++AD VKQI +N+LSNA+ FT G + + Sbjct: 453 DTVNLVNVKAISQHIELAIQLDPELPVMVVADEYRVKQILMNLLSNAVKFTQD-GYVNVE 511 Query: 729 TTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + S + ++R V DTG G+ +L PF Q S R GTGLGL + + +++ Sbjct: 512 VNYVSQDTPLIRCSVTDTGKGIDKDKLSTIFDPFTQEDGSITRRFGGTGLGLAICRQLLE 571 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPL 810 G + ST G+ E P+ Sbjct: 572 LMDGSIQVHSTKDLGSQFEFTIPV 595 >gi|119509764|ref|ZP_01628909.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Nodularia spumigena CCY9414] gi|119465630|gb|EAW46522.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Nodularia spumigena CCY9414] Length = 1389 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 146/286 (51%), Gaps = 29/286 (10%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSH---------KSDFLARVSHEIRTPLTAIIGF 606 L + DI++ KQ + + +H + +++S+ K +FL+ +SHE+R PL +++G+ Sbjct: 971 LVIEDITQQKQLEAERTHL--LGQEQSARNAAEAANRAKDEFLSILSHELRNPLNSMLGW 1028 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 S++++ ++F + + I+RS ++ DLLDIS+I +G++ + + + L Sbjct: 1029 SKLLQKKQFDQATINKGLAA---IERSAQAQAHLIKDLLDISRISAGRLRIDAQKLDLVS 1085 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 + A+ +V+ A K I I ++ A ++ D ++Q+ N+LSNAI FTPSGG++ Sbjct: 1086 VIESAMEVVRFSAEAKNIQIESNLAPAPRSMVGDANRLQQVFWNLLSNAIKFTPSGGKVT 1145 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 IS +T + I ++ DTG G++ L + F Q S+ G GLGL + + +V+ Sbjct: 1146 ISLDYTDFQAQI-QISDTGYGISADFLPHVFERFRQADGSRTRSNPGLGLGLSIVRYLVE 1204 Query: 787 ------------ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 G + P + +I P+ ++ P CI Sbjct: 1205 LHGGTIDAESQGEGQGATFTVRLPLQAPQQQISLPI--STEPATCI 1248 >gi|315126040|ref|YP_004068043.1| sensor protein [Pseudoalteromonas sp. SM9913] gi|315014554|gb|ADT67892.1| putative sensor protein [Pseudoalteromonas sp. SM9913] Length = 1101 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 98/358 (27%), Positives = 172/358 (48%), Gaps = 13/358 (3%) Query: 454 LCSILEATSDGIAIINR--EGI-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 L +E+ + GI+I + +G ++ N K+ GY E++L ++ NT Sbjct: 434 LAQAIESCNVGISIADASVQGFPLVFLNSEFEKITGYSKEEMLGINCSLLQGPNTDKNAI 493 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEK 568 +T + Q +E + E SL+I + + + Y DI+E K Sbjct: 494 DIITNAIKTLKTQRIEILNYKKDGTEFWNSLQISPVFNEQQQLTAYVGIQQDITEQKAAN 553 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 L AK AE+ + KS+FLA +SHEIRTP+ ++G +I + N + + Sbjct: 554 QLLIEAKAAAEQANIAKSEFLAAMSHEIRTPMNGVLGMLNLILDSSL----NEKQHHQVS 609 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 S N +L+I+ND+LD SK+++GK+ L +L + + I + ++A+ K I + Sbjct: 610 IALNSANSLLNIINDILDFSKVDAGKLELEELEFNLCNMLDDFIETIAIHAHSKNIPLML 669 Query: 689 SFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDT 744 + ++ D +KQI N+++NA+ FT G Q+I T +N ++ +V D+ Sbjct: 670 DIEHLEYAFVIGDAGRLKQILTNLVNNALKFTHKGEVQVIAKLTPINNNQMRFNCQVIDS 729 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G++ + K K F Q+ +S + GTGLGL + K + G + S KG+ Sbjct: 730 GIGISAAQQAKLFKSFSQVDSSTTRKYGGTGLGLAIVKKLCHLMEGDIQVQSKENKGS 787 >gi|22086084|gb|AAM90591.1|AF398464_1 protein kinase PpoS [Marinomonas mediterranea MMB-1] Length = 939 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 131/245 (53%), Gaps = 12/245 (4%) Query: 566 QEKNKLSH-AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +EK+ H A K A + + KS FLA +SHEIRTPL AI+G+ ++++ + + + Sbjct: 272 EEKSAQLHIANKEATESNRLKSQFLANISHEIRTPLNAIMGYIQILQKDQL----DKQQR 327 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA---ISLVQLYANE 681 Y + I +S +L I++D+LD SKIE+GK++L +++ + V E +S L Sbjct: 328 LYMDTIAQSTTNLLTIISDILDFSKIEAGKLSLDLTDINIRDIVDEVYQILSSANLVNAS 387 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL 739 K + + F ++P ++ D ++Q+ N++ NAI FT G + + SN + L Sbjct: 388 KELDLIPEFDLDVPTWVIGDPVRIRQVLTNLIGNAIKFTHEGSVRTTVKILEKSNSSLKL 447 Query: 740 --RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 ++ DTGVG+ +L+ KPF Q+ S + GTGLGL + K +V G + S Sbjct: 448 SFQIIDTGVGIPENKLDNLFKPFSQVDTSTTRKFGGTGLGLVITKKLVKQMGGNVEVSSE 507 Query: 798 PAKGT 802 G+ Sbjct: 508 HGIGS 512 >gi|78048723|ref|YP_364898.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037153|emb|CAJ24898.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 1177 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 131/250 (52%), Gaps = 12/250 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +QE +++AE+ S KS FLA + HE+RTP+T ++G SE++ PL N + Sbjct: 790 QQEWVLTQQRQQLAEQASIAKSHFLATLGHEVRTPMTGVLGMSELLLAT---PL-NAKQR 845 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 Y + I ++G +L +VND LD+++IE+GK+ L +P + E + A+ + Sbjct: 846 GYVDAICKAGTHLLRLVNDALDLARIEAGKLELVQQPFDPAQLTQELADFMHPIADARG- 904 Query: 685 LIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 +R + N +P ++ D V+QI +N+L NAI F G + + H + + +V Sbjct: 905 -LRLEYRNQLPPHVVVVGDATRVRQILINLLGNAIKFAERGEVSLTVSQH--GDALRFKV 961 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQ-QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 RDTG G+ + + ++ + F Q ++ R G+GLGL + + + A G+ + S Sbjct: 962 RDTGPGIGSEQQKRLFQRFEQGEGARTSSRYGGSGLGLAICQELTVAMKGRIRVRSRLGV 1021 Query: 801 GTLIEIIFPL 810 GT + PL Sbjct: 1022 GTQFTVDLPL 1031 >gi|296155941|ref|ZP_06838780.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] gi|295893447|gb|EFG73226.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] Length = 1188 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 127/233 (54%), Gaps = 3/233 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ S +KS+FLA +SHE+RTPL + + +++++ R G L + YA I S + +L Sbjct: 483 EQSSRYKSEFLANMSHELRTPLNSSLILAKLLQQNRTGNL-TEEQVRYAETIHASNSDLL 541 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RI 697 ++ND+LD+SK+E+G++ + E VS+D + + + A + + + P Sbjct: 542 VLINDILDLSKVEAGQVTVELETVSIDATLQALEEMFKPMAAARHLRLAFERLPGTPDTF 601 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 ++D + V QI N+LSNA+ FT G ++ +S T + + VRD+G+G+ +L+ Sbjct: 602 ISDGQRVTQILRNLLSNAVKFTEHG-EVALSVAPTDGGMLRIDVRDSGIGIAPDKLDMIF 660 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F Q S + G+GLGL +++ G+ + S KG++ + PL Sbjct: 661 EAFQQADGSTSRQYGGSGLGLSISREFSRLLGGRITVASEVGKGSVFTLWLPL 713 >gi|53715629|ref|YP_101621.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|253566558|ref|ZP_04844011.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|52218494|dbj|BAD51087.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|251944730|gb|EES85205.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|301165085|emb|CBW24653.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis 638R] Length = 557 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 85/274 (31%), Positives = 128/274 (46%), Gaps = 35/274 (12%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT+HDI+ KQ + L+ AK+ AE KS FLA +SHEIRTPL AI+GFSE++ Sbjct: 162 LTVHDITSIKQTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNAIVGFSELLAAAN- 220 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 +Y + + L+L +VND+LD+SKIE+G + + V ++ Sbjct: 221 ---TEEEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVDIN---------- 267 Query: 676 QLYANEKRILIRTSFANNIP------------RILADLRSVKQIALNILSNAIHFTPSGG 723 L N+ L R +N P + D + Q+ N +SNAI FT G Sbjct: 268 -LLLNDLEQLFRMKIGSNSPVQIITEPGLPSCMVHTDRNRIAQVVSNFVSNAIKFTTEGS 326 Query: 724 QIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 I + S+E + V DTG G++ +LE F ++ + + G GLGL + K Sbjct: 327 ---IRIGYQSSENGLRFYVSDTGSGISADKLEGVFDRFVRLQSDKN----GNGLGLSICK 379 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 +V+ G+ S KG+ P + P Sbjct: 380 TIVNKLGGEIGAESEVGKGSTFWFTLPEHSDIKP 413 >gi|330965670|gb|EGH65930.1| sensory box histidine kinase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 595 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 93/375 (24%), Positives = 165/375 (44%), Gaps = 55/375 (14%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L ++L++ DG+ +I+R+G + N + G+ S + Sbjct: 259 RLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGW-----------------DESRLGQS 301 Query: 513 LTEILSL-DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-------------- 557 L E LS +L + L + G T E L I I YS+T Sbjct: 302 LGEALSRPELDEQLHLVLRGGTLERAPEDLAIEIDGESRLLTYSMTPVSHTKGHILGAVM 361 Query: 558 -MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI-IGFSEVIKNQRF 615 +HD++E + + +S+F+ R SHE+RTP+T + + F + + F Sbjct: 362 VLHDVTEQRAFERV--------------RSEFVLRASHELRTPVTGMHMAFGLLQERLHF 407 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P R + N + ++ ++NDLL+ S+ ++G L P S++ + EA + Sbjct: 408 AP--ESREADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLEEARARY 465 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A E+ I++ +PR+ AD ++++ N+L NA+ TP G I + E Sbjct: 466 EGQAQEQDIVLILDIQEPMPRLHADQSQLERVLDNLLDNALRHTPPSGLIRLQ-ARRHGE 524 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 I+ V D G G+ + + +PF Q+ + G GLGL L K +V + G+ ++ Sbjct: 525 RAIISVEDNGEGIAYGQQGRIFEPFVQVGRKKG----GAGLGLALCKEIVQLHGGRMGVY 580 Query: 796 STPAKGTLIEIIFPL 810 S P +GT + PL Sbjct: 581 SRPGQGTQFYMALPL 595 >gi|304406284|ref|ZP_07387941.1| integral membrane sensor hybrid histidine kinase [Paenibacillus curdlanolyticus YK9] gi|304344868|gb|EFM10705.1| integral membrane sensor hybrid histidine kinase [Paenibacillus curdlanolyticus YK9] Length = 791 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 128/252 (50%), Gaps = 15/252 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ +L A A K + KS FLA +SHE+RTPL AIIG+SE++ + ++ Sbjct: 278 KERTAQLEQAHDEAIKANMIKSQFLANMSHELRTPLNAIIGYSEMLAEEAEELGEQI-FV 336 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E I +G +L ++ND+LDISKIE+GKM +H E L + + I+ V+ ++ Sbjct: 337 EDLGKIRNAGKHLLTLINDILDISKIEAGKMEIHMETFELSGLIQDVITTVKPLIDKNG- 395 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-------V 737 + D+ ++QI +N+LSNA FT +G + + N E Sbjct: 396 -NKLDXXXXXXXXXTDITKLRQILINLLSNASKFTQNG-----TISLEVNREPRKGRTGY 449 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 RV+DTG+GM+ ++EK +PF Q +S + GTGLGL ++ + + G + S Sbjct: 450 CFRVKDTGIGMSPEQVEKLFQPFMQADSSTTRKYGGTGLGLAISHSFSELMDGSIQVESE 509 Query: 798 PAKGTLIEIIFP 809 G++ P Sbjct: 510 MGAGSIFTCWLP 521 >gi|300868783|ref|ZP_07113392.1| periplasmic sensor signal transduction histidine kinase [Oscillatoria sp. PCC 6506] gi|300333219|emb|CBN58584.1| periplasmic sensor signal transduction histidine kinase [Oscillatoria sp. PCC 6506] Length = 680 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 98/367 (26%), Positives = 174/367 (47%), Gaps = 41/367 (11%) Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI---- 528 I+L+ R L G +E+I + + + S+M T LS DL + LEK+ Sbjct: 307 IVLAVTRLDYALSG--LEEIQQVLLNLIVGLVAASIMA---TLYLSRDLARPLEKLRDYA 361 Query: 529 -TLGSTKEEKLLSLRIIIKKL-PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 T+ S + +++ + I++ + + + W +E L A K A+ + K Sbjct: 362 LTVKSLESPQMVPHNLKIREFDQLAEAIDSMVERLRSWAEE---LEVASKQAQVANQLKD 418 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 +FL +SHE+RTPL IIGF + +++ +E+ + +L+I+ND+LD Sbjct: 419 EFLRNISHELRTPLNGIIGFLQFVQDGDCD--DRDEEMEFVQRAYDAAIHLLNIINDILD 476 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRTSFANNIPRILADLRSVK 705 I+KIESG +++ E ++L + + EA+ L + +K + LI I + AD +K Sbjct: 477 IAKIESGTLSMMLETINLTQVIEEAVDLQVVEVEQKGLELILPDLKEPI-MVYADPDKLK 535 Query: 706 QIALNILSNAIHFTPSGGQII----------------------ISTTHTSNEEVILRVRD 743 Q+ LN+LSNAI FT SG I ++ + + V++ + D Sbjct: 536 QVFLNVLSNAIKFTDSGKITISIRLESVLLNNGASYNGNAVYNMAQVTGTKDWVVVTIED 595 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA-KGT 802 TG+G+ + +K +PF S + G GLGL +++ ++ G ++S +GT Sbjct: 596 TGIGIDQEQQDKLFQPFVMADGSTTRKYGGNGLGLAISRNLMQLMAGTISLYSAGINQGT 655 Query: 803 LIEIIFP 809 + I P Sbjct: 656 TLTIALP 662 >gi|239908793|ref|YP_002955535.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798660|dbj|BAH77649.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 788 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 126/253 (49%), Gaps = 12/253 (4%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q + L AK AE + KS FLA +SHEIRTPL ++G +++ P N E Sbjct: 388 QAEEALQSAKIAAESANKAKSVFLANMSHEIRTPLNGVLGMLQLLDTT--AP--NDEQKE 443 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y +S N + +++D+LDIS+IE+G+M++ ++ L L A K ++ Sbjct: 444 YLLGAVQSTNRLARLLSDILDISRIEAGRMDIVELEFNIQNTWDSIKELFALEARRKGLI 503 Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-------ISTTHTSNEEV 737 + ++P +L D ++QI N++ NA+ FT G I + ++ +S V Sbjct: 504 LEFGCVKDLPLLLIGDEVRLRQILFNLVGNAVKFTEKGKIRIDASLLPLLPSSKSSAIRV 563 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 ++ V DTGVG+ ++ +PF Q S R +G GLGL + +V G+ I ST Sbjct: 564 LITVHDTGVGIPEEYIKDIFEPFVQADGSYTRRFQGAGLGLSIVSRLVKLLGGEIAIDST 623 Query: 798 PAKGTLIEIIFPL 810 P +GT I P Sbjct: 624 PGEGTAFYISLPF 636 >gi|153869726|ref|ZP_01999262.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152073807|gb|EDN70737.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 549 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 127/234 (54%), Gaps = 14/234 (5%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIK-NQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS+FLA +SHE+RTPL I+G+++++ ++R + E I RSG +L ++ND Sbjct: 69 KSEFLANMSHELRTPLNGILGYTQILNHDKRL----TDKQKEGIQIIHRSGEHLLILIND 124 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702 +LD+SKIE+GK+ + L + + + L+++ A +K I + +P + D + Sbjct: 125 ILDLSKIEAGKLEMSPIDFGLPIFLQDIVDLMKMRAEQKSIELMYETLYPLPMGVRTDKK 184 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 ++Q+ LN+LSNAI FT G + + N V DTG G+ +LE PF Q Sbjct: 185 RLRQVLLNLLSNAIKFTDK-GHVNFKVIY-DNGRARFEVEDTGCGVPADQLESIFLPFQQ 242 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + + Q + EGTGLGL ++K +V G+ ++ + G+L +D S P Sbjct: 243 MGDQHQ-QLEGTGLGLAISKQLVTMMGGQLHVETLLGTGSLF-----WFDISLP 290 >gi|126444327|ref|YP_001064150.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 668] gi|126223818|gb|ABN87323.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 668] Length = 771 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 100/380 (26%), Positives = 172/380 (45%), Gaps = 23/380 (6%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +R+ L ++EA+ D I + I S N A ++FGY ++ + V + Sbjct: 245 ERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGY--DEHAARGCDVAMLI 302 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSC--YSLT 557 + NH L E + D+R+ +E + + +++ +R + P +C SLT Sbjct: 303 APRWLRNHPLPESVP-DMREPIENVDVLCVRQDGG-RMRATMSASPVFDERDACIALSLT 360 Query: 558 MHDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + D E ++ + A++ A+ + K + LA VSHE+RTPL I G+ EV+ Sbjct: 361 LRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVL 420 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +N P+ + + IDRS + +V D+LD S + +GK+ L PV L V++ Sbjct: 421 RN----PVDGALQQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVND 476 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + A I + A + D ++Q+ N+LSNA FTP GG++ +S Sbjct: 477 VTGALGAAAQADGIALSVECALGTCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLE 536 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + L V DTG G++ L + F + + G GLGL + + + + + G Sbjct: 537 R-HDAQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGG 595 Query: 791 KFYIFSTPA-KGTLIEIIFP 809 K S +GT I P Sbjct: 596 KVEAASAGKNRGTTFAITLP 615 >gi|254458747|ref|ZP_05072171.1| signal transduction histidine kinase [Campylobacterales bacterium GD 1] gi|207084513|gb|EDZ61801.1| signal transduction histidine kinase [Campylobacterales bacterium GD 1] Length = 685 Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 131/245 (53%), Gaps = 9/245 (3%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK+ A+ ++ KS+FLA +SHEIRTP+ AIIGF+++++ + N Y++ Sbjct: 216 ELKQAKEEADSANNMKSEFLANMSHEIRTPMNAIIGFTDLLE-KSVKDTTNQNYVK---S 271 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + S ++L I+ND+LD+SK+E+GK+ + + E ++ A K + ++ + Sbjct: 272 VQDSSKILLAIINDILDLSKVEAGKLEIQHIATDIRTIGDEIKNVFYHKAKSKALKLKVN 331 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNE-EVILRVRDT 744 ++P ++ D +Q+ LN++SNAI FTP G I S +N + + V D+ Sbjct: 332 IEESVPSSLMLDEVRTRQVLLNLISNAIKFTPEGFVNLNIFSSLNQDTNLINLTIEVEDS 391 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+GM E +K + F Q N GTGLGL + K +V G + S+ G+ Sbjct: 392 GIGMDKSEQDKMFEAFAQHTNQSNKEYGGTGLGLAITKKLVTLMGGDISVKSSKDNGSTF 451 Query: 805 EIIFP 809 II P Sbjct: 452 RIILP 456 >gi|330502153|ref|YP_004379022.1| cache sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] gi|328916439|gb|AEB57270.1| cache sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] Length = 829 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 81/262 (30%), Positives = 135/262 (51%), Gaps = 12/262 (4%) Query: 565 KQEKN--KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + E+N +L A + A++ S KS F++ +SHE+RTPL AI GF+++++ Q+ P N + Sbjct: 450 RLERNATQLQRASQEAQEASRAKSQFISSMSHELRTPLNAIQGFAQLMRMQQ-AP-QNKQ 507 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +Y I + + +V D+LD S ++S + L V +SE LV A + Sbjct: 508 DTDYLEEILLASRHLNQLVGDILDWSSLQSDQPRLEMARVDAVTLMSECADLVAPEAEAR 567 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + + SF ++LAD R ++Q+ LN+LSNAI +TP G + + ++ V L + Sbjct: 568 GLTLHLSFPERSLQVLADPRRLRQVLLNLLSNAIKYTPKGS--VTLSCMQMDKHVRLMIS 625 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ +PF ++ + +GTG+GL L K G+ ++S P KG+ Sbjct: 626 DTGMGIAPELQPLLFEPFQRL-GQENGAIQGTGIGLSLCKEYAALMNGEMGLYSEPNKGS 684 Query: 803 LIEIIFPLY-----DTSHPHDC 819 I P Y S PH+ Sbjct: 685 QFWIDLPRYVESSLPESAPHEA 706 >gi|187933521|ref|YP_001886044.1| two-component sensor histidine kinase [Clostridium botulinum B str. Eklund 17B] gi|187721674|gb|ACD22895.1| two-component sensor histidine kinase [Clostridium botulinum B str. Eklund 17B] Length = 587 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 83/265 (31%), Positives = 138/265 (52%), Gaps = 24/265 (9%) Query: 556 LTMHDISEWK---QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-K 611 L DI+E + Q+K +L A I + K+ FLA +SHE +TPL I+ ++I K Sbjct: 301 LAAKDITEQRKLQQQKKELEEAIMI----ENFKNKFLANISHEFKTPLNVILSTLQLIDK 356 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 N + I Y + I R+ +L ++N+L+DI+KI+SG NL + + E + + Sbjct: 357 NSNDLKIHEIDLINYIDGIKRNSYRLLRLINNLIDITKIDSGHYNLQLQNYNAVEIIEDI 416 Query: 672 ISLVQLYANE--KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 + V+ Y E + I+ TS I + D ++ I LN+LSNAI +T G I +S Sbjct: 417 VMAVREYIKENTRDIIFDTSEEEIITAL--DENKIETIILNLLSNAIKYTNDDGIIEVSI 474 Query: 730 THTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 ++ + + +++ ++D G+G+ + ++ K F N R EGTG+GL L K++V+ + Sbjct: 475 KYSKDRKNILISIKDNGIGIDSNDINNIFKRFKYSNNILNRRCEGTGVGLSLVKSLVEMH 534 Query: 789 MGKF-----------YIFSTPAKGT 802 GK +IFS P K T Sbjct: 535 GGKIIAKNNQLKGAEFIFSIPVKLT 559 >gi|254498991|ref|ZP_05111691.1| putative sensory box sensor histidine kinase/response regulator [Legionella drancourtii LLAP12] gi|254351768|gb|EET10603.1| putative sensory box sensor histidine kinase/response regulator [Legionella drancourtii LLAP12] Length = 697 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/258 (27%), Positives = 146/258 (56%), Gaps = 8/258 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS+ K+ + KL AK++AE + K +FL + H+IRTPL+ I+GF++++K + Sbjct: 141 DISQMKEMEVKLREAKELAEAANKAKLEFLDNMRHDIRTPLSGIVGFADLLKQES----N 196 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 +P+ EY + + S + + +++++L+ ++ SG++ + +L +++ I L + A Sbjct: 197 SPQVKEYVDNLVASSHALHKLLDEVLEAIRVGSGEIPRLKKKFNLKKSLQHIIDLNRAKA 256 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEEV 737 K + + ++IP ++ D V +IAL +++NA++FT +G ++ + E+ Sbjct: 257 AHKHLKLTLDVDDSIPEYVIGDQIRVHRIALELIANALNFTDTGFVRLSVHLMKRKRREL 316 Query: 738 ILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 I++ V D+G+G+ + ++ F ++ +S Q +G GLGL + K VD G+ Y+ Sbjct: 317 IIKLVVEDSGIGIPKDKQQEIYMHFTRLTSSYQGIYKGAGLGLSVVKQFVDEVDGEIYVE 376 Query: 796 STPAKGTLIEIIFPLYDT 813 S KG+ +FPL ++ Sbjct: 377 SVLKKGSKFTFVFPLNES 394 >gi|74317286|ref|YP_315026.1| Hpt sensor hybrid histidine kinase [Thiobacillus denitrificans ATCC 25259] gi|74056781|gb|AAZ97221.1| Multi-sensor Hybrid Histidine Kinase [Thiobacillus denitrificans ATCC 25259] Length = 781 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 124/242 (51%), Gaps = 11/242 (4%) Query: 568 KNKLSH---AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +++++H A K AE S KSDFLA +SHEIRTP+ ++G +E++ G +P+ Sbjct: 245 EDQVAHRTVALKAAEAASQAKSDFLATMSHEIRTPMNGVLGMNELL----LGSSLDPQQR 300 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK-- 682 +A + SG +L ++ND+LD SKIESG ++L L E + + + + A K Sbjct: 301 MWAESVQHSGQHLLGVINDILDFSKIESGHLSLETVDFDLVELIDDTMRMFAHQAEHKGL 360 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--EVILR 740 + R + + + D ++QI N++ NAI FT G ++ +T + + + V L Sbjct: 361 ELACRITPSQRTIGLRGDPFRLRQIVANLVGNAIKFTEHGAVVVHATVNDNGDAAAVGLC 420 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+G+ + + F Q S R GTGLGL + + + + + S P + Sbjct: 421 VEDTGIGIAPEAQARIFEHFSQADGSTTRRFGGTGLGLAICRRLANLMGSDITVASAPGQ 480 Query: 801 GT 802 G Sbjct: 481 GA 482 >gi|57867173|ref|YP_188828.1| sensory box histidine kinase PhoR [Staphylococcus epidermidis RP62A] gi|57637831|gb|AAW54619.1| sensory box histidine kinase PhoR [Staphylococcus epidermidis RP62A] Length = 565 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 97/381 (25%), Positives = 191/381 (50%), Gaps = 29/381 (7%) Query: 433 IEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 + D+ R+ K +I+ +L + LE + +I++ G I+ N A ++F P + Sbjct: 206 VTTNDLARRLQKLNNSQKIQSNRLKTTLENIPSSVLMIDKHGEIVVANHAYYQVFN-PDQ 264 Query: 491 DILRKPFTVFLEQNTPS-VMNHYLTEILSLDLRQTLE-KITLGSTKEEKLLSLRIIIKKL 548 + K + F++ + ++ + TE + + + LE I TK + + I+ K Sbjct: 265 MVENKSYIGFIDDSIEKLIIESFRTEKV---IYEQLEVAINNVHTKYFDVSCIPILTKSK 321 Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 + +HDI+ ++ +N + +F+A VSHE++TP+T+I GF+E Sbjct: 322 KNLQGMVVVLHDITNLQKLENL--------------RREFVANVSHELKTPITSIKGFAE 367 Query: 609 VIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 + G + + ++ + N I + N + +V DLLD+S IE K L ++L E Sbjct: 368 TLIE---GAKNDEQSLDMFLNIILKESNRIESLVTDLLDLSHIEQQK-ELEINYMNLSEL 423 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 I +Q A KRI I++ ++ I A + Q+ N+LSNAI+++ ++I+ Sbjct: 424 AINIIDNLQTQAYNKRIKIQSEIEKDVI-IEAHENKIAQVITNLLSNAINYSSEDNKVIV 482 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 N+ V L ++D G+G++ + ++ + F ++ ++ GTGLGL + K +V+A Sbjct: 483 RVYRNDNK-VYLEIQDYGIGISETDQKRIFERFYRVDKARSRDSGGTGLGLSITKHIVEA 541 Query: 788 NMGKFYIFSTPAKGTLIEIIF 808 + G+ + S P KG++ +++F Sbjct: 542 HNGRIGVKSAPGKGSIFKVLF 562 >gi|322701064|gb|EFY92815.1| histidine kinase 1 [Metarhizium acridum CQMa 102] Length = 1293 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 131/251 (52%), Gaps = 14/251 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 IS + + + A++ AE + KS+FLA +SHEIRTP+ IIG +++ + Sbjct: 688 ISNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDL----T 743 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 E N ++ N +L I++D+LD+SKIE+ +M + P +L V A+ + + AN Sbjct: 744 QYQREMLNIVNNLANSLLTIIDDILDLSKIEARRMVVEEIPYTLRGTVFNALKTLAVKAN 803 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI- 738 EK + + +++P ++ D ++QI LN++ NAI FT G++ ++ +N+ + Sbjct: 804 EKFLDLTYKVDSSVPDHVIGDSFRLRQIILNLVGNAIKFTEH-GEVSLTIKERANQHEVG 862 Query: 739 -------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 V DTG+G+ +L F Q S + GTGLGL ++K +V+ G Sbjct: 863 VGEYAIEFVVEDTGIGIAKDKLNLIFDTFQQADGSMTRKFGGTGLGLSISKRLVNLMGGD 922 Query: 792 FYIFSTPAKGT 802 ++ S KG+ Sbjct: 923 LWVLSEAGKGS 933 >gi|291561249|emb|CBL40048.1| Signal transduction histidine kinase [butyrate-producing bacterium SS3/4] Length = 468 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 129/240 (53%), Gaps = 7/240 (2%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 NK+ + K S + +F A VSHE++TPLTAI G++E+I++ G N +A+ Sbjct: 207 NKIRQQHEDILKSSQVRQEFTANVSHELKTPLTAISGYAELIEHGMSGE--NTE--RFAS 262 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I ++ +L ++ND++ +S+++ GK ++ + + L E + ++Q+ A ++ + IR Sbjct: 263 EIHKNAARLLTLINDIIQLSQLDGGKKDVEYRDLDLFPLARECVDMLQMNAQKQNVTIRV 322 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 P + AD + ++++ N+ NAI + G + + TT N L V+DTG+G+ Sbjct: 323 Q-GGEAP-VFADKQLMEELIYNLCDNAIRYNKKDGTVTV-TTGIENGHTFLSVKDTGIGI 379 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + E+ + F ++ S+ GTGLGL + K +V + K + S KGT I + F Sbjct: 380 SAEHQERVFERFYRVDKSRSKATGGTGLGLAIVKHIVAQHGAKLTLESEQGKGTEIRVEF 439 >gi|168029047|ref|XP_001767038.1| sensory histidine protein kinase [Physcomitrella patens subsp. patens] gi|162681780|gb|EDQ68204.1| sensory histidine protein kinase [Physcomitrella patens subsp. patens] Length = 330 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 9/222 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTPL II +E+ + R +P EY + + S +L I+ D+ Sbjct: 6 KSQFLANMSHEIRTPLNGIINCTELCLDTR----TSPEQQEYLDLVRFSAKHLLRIITDI 61 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703 LD SKIE+GK+ + SL + + A+S++ AN+K + + + +P +I+ D Sbjct: 62 LDFSKIEAGKLEMEDIQFSLYDQLEHAVSVLAARANKKGLELACQVDHTVPDQIIGDPGR 121 Query: 704 VKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 + Q+ +N++ N+I FT G I+ + + + N E++ VRDTG+G+ + + F Sbjct: 122 LFQVFVNLIGNSIKFTAEGEVIVSAMVKSRNGDNIELLFSVRDTGIGIPKQKQSLLFQAF 181 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 Q+ +S GTGLGL ++ + A G ++ + KG+ Sbjct: 182 SQVDSSTTRLYGGTGLGLVISSKLAAAMGGTMWV-ESEGKGS 222 >gi|219848012|ref|YP_002462445.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219542271|gb|ACL24009.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 430 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 126/243 (51%), Gaps = 21/243 (8%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 + D +A VSHE+RTPL ++ E +++ + + A ID V +V++L Sbjct: 191 RRDLVANVSHELRTPLASLKLLVETLQSAPPPDIAARMLEQMAQEID----AVTQLVDEL 246 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 ++S++ESG+++L EP+++ + AI ++ A K I T +++P L D + Sbjct: 247 HELSRLESGRVSLKLEPLAVWPVIERAIERIRPQAERKHHTICTEPVSDLPPALMDGDRI 306 Query: 705 KQIALNILSNAIHFTPSGGQIIISTT-----------------HTSNEEVILRVRDTGVG 747 Q+ LN+L NA+ FTP GG I ++ H + +++ VRDTG+G Sbjct: 307 GQVLLNLLHNAVKFTPEGGTITVAAQVLHIAVDDPPSRTDRPPHPAGTWILISVRDTGIG 366 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 +++ ++ + + F ++ ++ GTGLGL +AK +V+ + G+ + S +G+ Sbjct: 367 ISSRDIRRIFERFYKVDRARTRHTGGTGLGLAIAKHLVEGHGGRIWASSQEGRGSTFWFT 426 Query: 808 FPL 810 P+ Sbjct: 427 LPV 429 >gi|255011234|ref|ZP_05283360.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 910 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 126/249 (50%), Gaps = 12/249 (4%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 ++W++ +L K+ AE KS FLA +SHEIRTPL AI+GFSE++ + +P Sbjct: 527 TKWEKMAQELKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVS-----CDDP 581 Query: 622 RYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 E Y I + L+L ++ND+LD+SKIESG + E +L + +E +++Q Sbjct: 582 EEKEEYMGIIQSNNELLLRLINDILDLSKIESGILERKRERFNLSKVCNELYTMMQPKIT 641 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + +R + I D +KQ+ +N L+NA+ T SG I + Sbjct: 642 NPEVELRLGNSGPDCWIFLDRNRLKQVWMNYLTNAVKCTHSG--YIKMGYSIEKGGIRFY 699 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D+GVG+ LE + FG+ + +GTGLGL +++A+++ GK S P Sbjct: 700 VEDSGVGIP---LEVQDRVFGRFQKLNEF-AQGTGLGLAISRAIIEGADGKVGFSSVPGV 755 Query: 801 GTLIEIIFP 809 G+ P Sbjct: 756 GSTFWAWIP 764 >gi|240145146|ref|ZP_04743747.1| putative sensor histidine kinase [Roseburia intestinalis L1-82] gi|257202824|gb|EEV01109.1| putative sensor histidine kinase [Roseburia intestinalis L1-82] Length = 437 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 132/244 (54%), Gaps = 14/244 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 KQ + L+HA+ + +F A VSHE++TPLTAI G++E+I + G G Sbjct: 208 KQHMDILNHAQM--------RQEFTANVSHELKTPLTAISGYAELIAS---GMTGGEDTA 256 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +AN I +S + ++ND++ +S+++ + L FE V L + + I +Q+ A++ + Sbjct: 257 HFANEIHKSAERLQALINDIIKLSELDDSDLKLEFETVDLHDLGEQCIHSMQMQADKNEV 316 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + A+ +P + + ++++ N+ SNA+ + GG + I TT N +L V+DT Sbjct: 317 TLHLEGAS-VP-MSGNKTLLEELLFNLCSNAVRYNKKGGSVTIVTT-IENTRPVLIVKDT 373 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + E+ + F ++ S+ GTGLGL + K +V + + + S GT I Sbjct: 374 GIGIPKEQQERVFERFYRVDKSRSKSTGGTGLGLAIVKHIVAQHDAQMTLTSEVGVGTEI 433 Query: 805 EIIF 808 +I+F Sbjct: 434 KIVF 437 >gi|295106470|emb|CBL04013.1| Signal transduction histidine kinase [Gordonibacter pamelaeae 7-10-1-b] Length = 552 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 67/246 (27%), Positives = 127/246 (51%), Gaps = 3/246 (1%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q+++ L + +E+ KSD L+ V+HE+RTPLT+II F+++ + P Sbjct: 303 EQQRDALERLNEKLAEETQFKSDLLSMVNHELRTPLTSIITFAQISREA--CPPDRESER 360 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 I+++ ++L ++ND+LDI++ ++G +++ EP+ L + VS + A + + Sbjct: 361 HSWEEIEKNSQILLTMINDMLDIARSDAGSVHVACEPMDLGDIVSSVRGTMTPLARKYCV 420 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-THTSNEEVILRVRD 743 RT A+++P + D +++ N+ SNAI FTP GG + + N V L + D Sbjct: 421 AFRTRVASDVPLVNGDFEKTQRMLENLASNAIKFTPDGGTVELRVDLDAGNGSVRLCMAD 480 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 G+G+ + E+ + F Q+ ++ + G+GLGL L + + S +G+ Sbjct: 481 DGIGIAPEDHERIFERFFQVDSTSTRKYNGSGLGLALVREYAAVQGFAVSVESALGRGST 540 Query: 804 IEIIFP 809 I P Sbjct: 541 FTITIP 546 >gi|260770406|ref|ZP_05879339.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio furnissii CIP 102972] gi|260615744|gb|EEX40930.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio furnissii CIP 102972] Length = 1203 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 76/255 (29%), Positives = 131/255 (51%), Gaps = 7/255 (2%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 ++DIS K+++ L AK +A+K + FLA +SHE+RTP+ ++G E++K + Sbjct: 610 VVNDISAQKEQERHLRQAKNVAQKAVLSRERFLASMSHELRTPIAGMVGLLEMLKIRETN 669 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + R I N + S + + +VND+LD SK+E+ ++ L L + E + + Sbjct: 670 E--DTRLI--LNNVMSSAHHLHLLVNDILDFSKLEAQQLELDSVKCYLLHEIGELLRVHC 725 Query: 677 LYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A EK + ++ + ++ D ++QI N+LSNAI FT SG + + Sbjct: 726 TAAREKSLDFHVNWTPGRVKTVIVDSLRLRQIINNLLSNAIKFTQSG--FVSVDIDVTER 783 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++++ + D+G GM+ L+ PF Q ++ R GTGLGL + +V G I Sbjct: 784 DMVMNISDSGEGMSPEFLKTVFDPFVQADSTIARRYGGTGLGLAIVHDLVKVMKGDITID 843 Query: 796 STPAKGTLIEIIFPL 810 S KGT I++ P+ Sbjct: 844 SEQGKGTSIQVTIPI 858 >gi|109900591|ref|YP_663846.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] gi|109702872|gb|ABG42792.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] Length = 1011 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 78/238 (32%), Positives = 124/238 (52%), Gaps = 6/238 (2%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + KL+ + + +S K FLA +SHEIRTPLT+IIG+++ I G + Sbjct: 406 EANRKLAKSNHELVEANSAKDYFLANMSHEIRTPLTSIIGYADGI---LLGDIDKAEQER 462 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 N I ++G +L I+ND+LD+SKI++ K+ +P L + E S+ A +K I Sbjct: 463 VTNIIYQNGAHLLRIINDILDLSKIDANKLEFDTQPCHLFTLLGEIESVAGKRARDKGIG 522 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 ++ +P +I+ D +KQI N+ +NA+ FT SG I +N +I++V DT Sbjct: 523 FHVNYDFPLPDKIITDAVRLKQILFNLTNNALKFTHSGH--ITLNVSIANTTLIIKVIDT 580 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G G++ ++ K PF Q + + GTGLGL +AK + G S KG+ Sbjct: 581 GEGISQSDMHKLFHPFTQADSVINRQVGGTGLGLSIAKRLAQGLGGDISALSQLRKGS 638 >gi|237713394|ref|ZP_04543875.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262406767|ref|ZP_06083316.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294646034|ref|ZP_06723699.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294810538|ref|ZP_06769191.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229446633|gb|EEO52424.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262355470|gb|EEZ04561.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292638605|gb|EFF56958.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294442302|gb|EFG11116.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 512 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 136/253 (53%), Gaps = 15/253 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ KQ + +L AK+ AE+ KS FLA +SHEIRTPL AI+GFS ++ L Sbjct: 267 DITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDEAEL- 325 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R++ Y + + + L+L++++D+LDISKIE+G ++L V + + E I+ ++ Sbjct: 326 --RHV-YMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIA---TFS 379 Query: 680 NEKR-ILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 ++KR + F N P+I+ AD + Q+ N L+NA+ FT + G I +S + Sbjct: 380 HKKRDSAVELRFDENSPQIVIDADKNRIVQVLSNFLTNALKFT-TKGSITLSYLLEDESQ 438 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V V DTG G+ + + + F ++ + Q G GLGL + +++V GK + S Sbjct: 439 VRFCVTDTGKGIPDEQKHEIFNRFVKLDSFVQ----GAGLGLSICQSLVKRMGGKIGVES 494 Query: 797 TPAKGTLIEIIFP 809 +G+ P Sbjct: 495 REGEGSCFWFTHP 507 >gi|39726383|gb|AAR30134.1| putative histidine kinase TCS1p [Gibberella moniliformis] Length = 685 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 96/347 (27%), Positives = 168/347 (48%), Gaps = 27/347 (7%) Query: 457 ILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +++A D I +++ G +++ N GY E+I+ K FT F Q + + Sbjct: 157 LVQAVKDYAIFLLDTRGNVMTWNTGAELNKGYKKEEIIGKHFTKFYGQE--DIQSRKPER 214 Query: 516 ILSLDLRQ-TLEKITLGSTKEEKLLSLRIIIKKL---PFSSCYSLTMHDISEWKQEKNKL 571 L + LR+ +E K+ ++I + + +++E K+ + +L Sbjct: 215 ELEICLREGRVEDEGWRYRKDGSRFWANVVITAIYKNDIHVGFGKVTRNLTERKEAELRL 274 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 + A E+ + K+DFLA +SHEIRTP+ ++ ++ + R E AN I Sbjct: 275 TAA---YEESTKLKNDFLANMSHEIRTPMHGVLSACSLLLDSRL----TEEQRETANMIQ 327 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 SG+++L I+ND+LD SKI +G + E + + ++ A+ Q + + ++ + Sbjct: 328 ESGHVLLRIINDILDYSKIAAGTFPIRNERLDIANVITSAVRRAQTTV-QPGVSLKLELS 386 Query: 692 NNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIS-------TTHTSNEEVILRVRD 743 +N+P+ D +QI NIL NA+ FT G + + T+HT EV D Sbjct: 387 SNLPKWAEGDALRYRQIFENILGNAVKFTEKGYISVHASLLAEDETSHTIQTEVW----D 442 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 TG G+T + ++ KPF Q+ Q R GTGLGL +AK++V+ G Sbjct: 443 TGHGITEVDAKELFKPFTQLDTPDQKRRPGTGLGLSIAKSLVELMGG 489 >gi|329909981|ref|ZP_08275168.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium IMCC9480] gi|327546346|gb|EGF31363.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium IMCC9480] Length = 732 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 94/341 (27%), Positives = 161/341 (47%), Gaps = 30/341 (8%) Query: 488 PVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLD-LRQTLEKITLGSTKEEKLLSLRII 544 P++ + + P V L + P +N +TE L L R T+ +LL + Sbjct: 263 PIDGMQQTPRMGAVRLVRGYPLAVNITITEDLYLSSWRSTV-----------RLLGGIGL 311 Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 + L + L + +Q+ + K+ AE+ ++ KS FLA +SHEIRTP+ I+ Sbjct: 312 VSLLALCGAFILMAIILKRREQDAEQALTLKREAEEANTAKSSFLAMMSHEIRTPMNGIL 371 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEP 661 G +E++ + PL + YA + + ++ I+N++LD SK+ESG M + F+P Sbjct: 372 GMAELMLDT---PLDASQR-TYAGNVYNGAHHLMRIINEILDFSKVESGYMEIDLTTFDP 427 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTP 720 L + E I L + A K++ IRT A ++ AD ++Q+ N+++NAI FTP Sbjct: 428 TRL---IGEVIGLHRNGATAKQLQIRTEIAPAAALLVSADASRIRQVLGNLINNAIKFTP 484 Query: 721 SGGQIIIST-----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 +G + + ++ V D+G+G++ ++ +PF Q N+ + GTG Sbjct: 485 AGAITVRFVALPDPADATQVQLEFSVADSGIGISAEAQQRLFEPFVQADNTISRKYGGTG 544 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 LGL + K +V+ G S GT P P Sbjct: 545 LGLAICKRLVELMRGDIRCESDIGAGTRFSFRIPARMVEQP 585 >gi|302388871|ref|YP_003824692.1| integral membrane sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] gi|302199499|gb|ADL07069.1| integral membrane sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] Length = 483 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 78/251 (31%), Positives = 128/251 (50%), Gaps = 25/251 (9%) Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP--LGNPRYIEYANYIDRSGNLV 637 ++ K++F+A VSHE+RTPLTAI G++ + + G G E A DR L Sbjct: 238 RQEELKNEFIASVSHELRTPLTAIKGWTITLLSAIRGTSQAGRSDIRENAGVPDRRVYLN 297 Query: 638 LD------------------IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 LD +V +LLD S+ E+G + L+ + V+L + ++ + + A Sbjct: 298 LDELIEGLEIITKESERLSELVEELLDFSRFEAGAIKLNLDKVALVDTLNYIKTQMMPRA 357 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + + +P ILAD +KQ+ +N+L NA FTP+GG++ + ++N+ V + Sbjct: 358 KRQAVEFEIYPEEGLPEILADENRIKQVLINLLDNAFKFTPAGGRVRVK-AESANDSVRI 416 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG G+ +L K F + + Q G+GLGL + +V + G+ I S P Sbjct: 417 IVEDTGCGIPPEDLPHVTKKFYKAKSKQP----GSGLGLAICDEIVRLHGGRMEITSAPG 472 Query: 800 KGTLIEIIFPL 810 KGT +E+I P+ Sbjct: 473 KGTRVEVILPV 483 >gi|94264256|ref|ZP_01288050.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455301|gb|EAT05508.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 404 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 79/276 (28%), Positives = 137/276 (49%), Gaps = 23/276 (8%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSH---KSDFLARVSHEIRTPLTAIIGFSEVI 610 + L M + ++ A+++A + S KS+FLA +SHEIRTP+ +IG + ++ Sbjct: 137 FRLEMELMESNRRLGEAAVRAEELAREAQSANIAKSEFLANMSHEIRTPMNGVIGMASLL 196 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + + YA I SG +L+++N +LD SKIE+G++ L P S E V E Sbjct: 197 LAEDL----SDEQRSYAQIIISSGQALLELINQILDFSKIEAGRLELDCRPFSPRELVQE 252 Query: 671 AISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII--- 726 L+Q A + I + + + +P ++ D ++Q+ LN++ NAI FT GG + Sbjct: 253 VAVLLQPQAAAQNITLTSEVSPGVPAVVEGDPVRLRQVLLNLVGNAIKFTEIGGVAMELS 312 Query: 727 -----ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 + H S + V+D+G+G+ +L+ + F Q+ S + GTGLGL + Sbjct: 313 PAPADPAAPHCS---LHFAVKDSGIGIPAEKLDLLFQRFQQVDGSTCRKYGGTGLGLAIC 369 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 + +++ G+ + S KG+ PL PH Sbjct: 370 RRLMELMGGEIGVESEEGKGSTFWFTVPL----RPH 401 >gi|70731280|ref|YP_261021.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] gi|68345579|gb|AAY93185.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] Length = 1082 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/256 (29%), Positives = 133/256 (51%), Gaps = 16/256 (6%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + +HD++ ++ L A++ A+ + KS FLA +SHEIRTPL ++G E++ Sbjct: 480 WLCALHDVTRHVEDAAALEEARQAADSANQAKSRFLATMSHEIRTPLYGVLGTLELLGLT 539 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSE 670 PR +Y + I RS + +++D+LD+SKIE+G+M L F P+ L E + Sbjct: 540 SLA----PRQQDYLHTIQRSSATLFQLISDVLDVSKIEAGQMTLELQDFCPLQLTE---D 592 Query: 671 AISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII--- 726 + +A K +L+ +P R+ D ++QI N+LSNAI FT +G ++ Sbjct: 593 TVRTYSAFARSKGLLLYACIDPALPDRLRGDPIRIRQILNNLLSNAIKFTDNGRVVLRVQ 652 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + + V +V D+G G++ + ++ PF Q+ ++ + G GLGL + K + + Sbjct: 653 LLESDDGRAHVQWQVSDSGGGISLAQQQQLFDPFYQVNDATE--QAGAGLGLAICKWLCE 710 Query: 787 ANMGKFYIFSTPAKGT 802 G+ + S P G+ Sbjct: 711 LMAGQLNLVSEPGLGS 726 >gi|332382337|gb|AEE67184.1| virulence sensor protein [Bordetella pertussis CS] Length = 1238 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 81/252 (32%), Positives = 135/252 (53%), Gaps = 9/252 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E + +L AK+ A+ + K+ FLA +SHEIRTP+ AIIG E+ + Sbjct: 695 DITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPTDQEP 754 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + I+ A RS +L+++ D+LDI+KIE+GK +L +L AI + A Sbjct: 755 DRQSIQVAYDSARS---LLELIGDILDIAKIEAGKFDLAPVRTALRVLPEGAIRVFDGLA 811 Query: 680 NEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 +K I L+ + + +L D +KQ+ N++ NAI FT + GQ++++ T + + Sbjct: 812 RQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFT-TEGQVVLAVTARPDGDAA 870 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKFYI 794 V V DTG G++ + + KPF Q+ S + GTGLGL +++ +V+ G + Sbjct: 871 HVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVM 930 Query: 795 FSTPAKGTLIEI 806 S P GT + + Sbjct: 931 RSAPGVGTTVSV 942 >gi|323168623|gb|EFZ54303.1| signal transduction histidine-protein kinase atoS [Shigella sonnei 53G] Length = 597 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 92/395 (23%), Positives = 186/395 (47%), Gaps = 34/395 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 229 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 288 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 289 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 341 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 342 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 396 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q P+ + EY + + + + + ++ LL+ S+ Sbjct: 397 AHEVRNPLTAIRGYVQILRQQTSDPI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 452 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 453 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL 508 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 509 INAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFF------TTKAS 562 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 GTGLGL L++ +++A+ G + S P G +I Sbjct: 563 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLI 597 >gi|315645081|ref|ZP_07898207.1| Signal transduction histidine kinase [Paenibacillus vortex V453] gi|315279502|gb|EFU42807.1| Signal transduction histidine kinase [Paenibacillus vortex V453] Length = 409 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 71/259 (27%), Positives = 125/259 (48%), Gaps = 6/259 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+ E + ++L + ++ KS+ LA +SHEIRTP+ I+G S +++ Sbjct: 152 DMLELESTIDELKQMEDENDRILQEKSELLAVMSHEIRTPMNGIMGMSALLQLTSL---- 207 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + EY I++S +L ++ +L+ SK+E+ KM L EP L + + SL Sbjct: 208 DEEQREYVELIEQSSESLLSMIEHILEYSKVENTKMELVMEPFYLRPLMKQVTSLFMNDV 267 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K I + + +P ++ AD ++Q+ +N++SNAI FT G + + + Sbjct: 268 QRKGIRLHVVIGDEVPEKVTADANKIRQVLINLISNAIKFTSEGEVSVAVGISPETQAIK 327 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG-EGTGLGLPLAKAMVDANMGKFYIFST 797 + VRDTG+G+ + K F Q +++ R GTGLGL + K + + G+ ++ T Sbjct: 328 ISVRDTGIGIPVDRRHRLFKSFSQAHHAEVTREYTGTGLGLSICKQLTELMNGRIWLEET 387 Query: 798 PAKGTLIEIIFPLYDTSHP 816 +G PL P Sbjct: 388 SGEGACFTFTIPLIGMMEP 406 >gi|303240382|ref|ZP_07326900.1| integral membrane sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] gi|302592109|gb|EFL61839.1| integral membrane sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] Length = 488 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 84/257 (32%), Positives = 135/257 (52%), Gaps = 20/257 (7%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L ++SE +E NKL ++ DF+A VSHE RTPLT I G E + + Sbjct: 244 LLASELSEATEEINKLEQVRR----------DFVANVSHEFRTPLTVIRGSLEALSD--- 290 Query: 616 GPLGNPRYIE--YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + + I+ Y + + L +V+DLL++S+++SGK+ +H E V + +S+ I Sbjct: 291 GTIEDTEDIKRFYQRMLSETRGLE-RLVSDLLELSRLQSGKITIHKEHVHIPSLLSDIIK 349 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +Q A++K I I +N+P +L D ++Q+ + + NAI ++P I+ TTH Sbjct: 350 SMQTIADKKEIQIDFITDDNVPPVLGDYDRLRQLFVIFIDNAIKYSPD-KTIVTVTTHVK 408 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + IL ++D G G+ EL F + S+ + GTGLGL +AK ++ N G Sbjct: 409 DSLEIL-IQDQGYGIAVEELPYVWDRFYKTDKSR--KSSGTGLGLAIAKHLIKLNGGSVE 465 Query: 794 IFSTPAKGTLIEIIFPL 810 + S KGT IEI P+ Sbjct: 466 LKSAAGKGTTIEIQLPV 482 >gi|186685420|ref|YP_001868616.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186467872|gb|ACC83673.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1235 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 81/264 (30%), Positives = 141/264 (53%), Gaps = 27/264 (10%) Query: 561 ISEWKQEKNKLSHAKKIAEKESS--------------HKSDFLARVSHEIRTPLTAIIGF 606 I + + + +L ++KIA +E KS+FLA +SHE+RTPL AI+GF Sbjct: 644 IEQLQATQEELIQSQKIAAQEQQAAVREAARSAAANLAKSEFLANMSHELRTPLNAILGF 703 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 ++V+ +Q + + + E I+R+G +L+++ND+L++SKIE+G++ L+ L Sbjct: 704 TQVM-SQDYSL--SSEHQENLAIINRAGEHLLNLINDILEMSKIEAGRITLNRSSFDLIH 760 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI 725 ++ ++ L A K + + +A++IP+ I D + Q+ LN+L NAI FT GG + Sbjct: 761 LLNNLEEMLYLRAASKSLQLVFEYAHDIPQYIETDENKLFQVLLNLLGNAIKFTDIGG-V 819 Query: 726 IISTTHTSNEE-------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 + EE + V+DTG G+T E+ + F Q ++ + +GTGLGL Sbjct: 820 TLRLRWEQEEENLSYNPRLFFEVQDTGCGITPQEIGLLFEAFEQTEIGRKSQ-QGTGLGL 878 Query: 779 PLAKAMVDANMGKFYIFSTPAKGT 802 +++ V G + STP G+ Sbjct: 879 AISRKYVQLMGGDITVSSTPGMGS 902 >gi|309792572|ref|ZP_07687034.1| PAS/PAC sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308225386|gb|EFO79152.1| PAS/PAC sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 720 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 127/231 (54%), Gaps = 3/231 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ + KS FLA +SHE+RTPL AI+GF+ + + GPL + + + I RS +L Sbjct: 491 QRANQAKSAFLASMSHELRTPLNAILGFTGTLLMRLPGPLTESQERQLST-IKRSAQHLL 549 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++ND+LD+++IESG++ L V E + E I+ ++ A ++ + + + + Sbjct: 550 ALINDILDLARIESGRLELRLTTVLAQEVLHEVIAELRPLAEQRGLQFQMDAPESPLPLT 609 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 DLR ++QI +N+++NAI FT G++ +S + ++ VRDTG+G+ + + Sbjct: 610 TDLRILRQILINLVNNAIKFTDV-GEVHVS-LRCETQALLFVVRDTGIGIKPEDQARLFA 667 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 FG+I + EGTGLGL LA + +A G + S G+ + P Sbjct: 668 DFGRINSVDVHTREGTGLGLRLAYRLAEALGGTVTLQSEYGVGSTFTLRLP 718 >gi|300868138|ref|ZP_07112772.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] gi|300333873|emb|CBN57952.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] Length = 939 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 77/267 (28%), Positives = 148/267 (55%), Gaps = 31/267 (11%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG--NPR 622 ++ ++L AK A+ + K++F+A +SHE+RTPL I+G++++++ PL + + Sbjct: 446 EERTSELKDAKIAADTANRAKTEFIANMSHELRTPLNGILGYAQILQ-----PLKTTDEK 500 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + I + G+ +L ++ND+LDISKIE+ KM LH +S + + +L A +K Sbjct: 501 VKDGLRIIYQCGSHLLTLINDILDISKIEAQKMELHPTDFHFPSFLSGVVEICRLKAEQK 560 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG----------------GQI 725 I++ N++P I +D + ++Q+ +N+LSNAI FT G ++ Sbjct: 561 GIVLAYQPQNSLPDSIRSDEKRLRQLLINLLSNAIKFTDEGRVDFKVEVIGTQECPQAEL 620 Query: 726 IISTTHTSNEEVILRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 ++ T+++ I ++R DTG+G+ + +LEK PF Q+ + + +G+GLGL ++ Sbjct: 621 REKSSITNHQLPITKIRFQIEDTGIGINSEQLEKIFLPFEQVSEASR-NHQGSGLGLAIS 679 Query: 782 KAMVDANMGKFYIFSTPAKGT--LIEI 806 + +V+ + S P G+ L+E+ Sbjct: 680 QKIVELMGSTIKVKSQPGVGSTFLVEL 706 >gi|288561576|ref|YP_003428982.1| two component system histidine kinase [Bacillus pseudofirmus OF4] gi|288548208|gb|ADC52090.1| two component system histidine kinase [Bacillus pseudofirmus OF4] Length = 464 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 127/234 (54%), Gaps = 7/234 (2%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ + + +F A +SHE+RTP+T + G+S+V++ R+ +Y ID + Sbjct: 231 QRVNEQRREFFANISHELRTPMTYLKGYSKVLREGRWKT--EEERNQYLEIIDHEATRLT 288 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI--RTSFANNIPR 696 +V+DL D++++E G+ NL + V+++E + + A E+ + I R ++ Sbjct: 289 YLVDDLFDLAQMEEGRFNLEHKKVNINEIIKLVVKKTAYKALEQNLKIEYRGGLSDKDDS 348 Query: 697 I-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 I L D ++Q+ +N++ NAI +T G I T +++E + ++VRDTG+GM EL Sbjct: 349 IVLGDPLRLEQVLINLVENAIKYTKEGS--ITIYTVSNDENIKIKVRDTGIGMEEEELPY 406 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F ++ S+ GTGLGL + K +++ + G + ST +GT II P Sbjct: 407 IFERFYRVEKSRSRAFGGTGLGLSIVKQLIELHNGTIEVESTVGEGTEFTIILP 460 >gi|238920517|ref|YP_002934032.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Edwardsiella ictaluri 93-146] gi|238870086|gb|ACR69797.1| sensor kinase protein RcsC [Edwardsiella ictaluri 93-146] Length = 984 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 81/259 (31%), Positives = 129/259 (49%), Gaps = 9/259 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 473 AMVDVSARVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLRTKTL- 531 Query: 617 PLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P ++ + S L+L I+ND+LD SKIES ++ + E + I Sbjct: 532 ----PEEVQRLLGAMSNSSGLLLKIINDILDFSKIESEQLKIEPGRFVPREVIPHIIGNY 587 Query: 676 QLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 KR+ + +P L+ D+ ++Q+ N+LSNAI FT +G II ++ Sbjct: 588 LPLVVRKRLTLYCFIEPEVPEALSGDIMRIQQVLSNLLSNAIKFTDTG--CIILQARVND 645 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + RVRDTG+G+ ++ + PF Q+ + Q GTGLGL + + +V G + Sbjct: 646 FYLEFRVRDTGLGIPPRDVLRLFDPFFQVGSGVQRHFHGTGLGLAICEKLVSLMDGDIAV 705 Query: 795 FSTPAKGTLIEIIFPLYDT 813 S+P G++ I P+Y Sbjct: 706 ESSPGLGSIFTIRLPMYQA 724 >gi|315180030|gb|ADT86944.1| para-aminobenzoate synthase [Vibrio furnissii NCTC 11218] Length = 568 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 77/271 (28%), Positives = 129/271 (47%), Gaps = 16/271 (5%) Query: 544 IIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 I+K+L C +L+ I + + E K + + A KE F+A ++HE+RTPL Sbjct: 167 IVKQLSLVGELLCSALSRQLIMKRQDESCKRAEESEKATKE------FVAMINHELRTPL 220 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 ++G +E++ + +P + Y + SG+++ I+NDLLD SK+ +G M L Sbjct: 221 NGLLGSAELLSDTSL----DPEQLSYLTNLQHSGDMLRVIINDLLDFSKMNAGMMQLILT 276 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFT 719 + + A EK+I + P + D+ + QI +N++ NAI FT Sbjct: 277 QFRWQDLEHTLNGIFSPKAREKKIEFVVNTRGEFPTYWIGDVERINQILVNLVGNAIKFT 336 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 G + +E ++LR+ DTG+G+ + PF Q+ S + EGTGLGL Sbjct: 337 HRGA--VTVAARWVDERLLLRISDTGIGIPLAAHDTLFDPFTQVDRSSSRQYEGTGLGLA 394 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + K +V+ G S +GT + PL Sbjct: 395 ICKNLVELMNGSIDFSSVEGEGTEFFVSIPL 425 >gi|319764394|ref|YP_004128331.1| ATP-binding region atpase domain protein [Alicycliphilus denitrificans BC] gi|317118955|gb|ADV01444.1| ATP-binding region ATPase domain protein [Alicycliphilus denitrificans BC] Length = 585 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 126/250 (50%), Gaps = 8/250 (3%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L+ ++ A+ S KSDFLA +SHE+RTPLT+I GF+E+++ + PL E + Sbjct: 331 RRLARSEAQAQSASRAKSDFLAAMSHELRTPLTSIRGFAELMELRSKDPL----VREQSA 386 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I + + ++ ++LD++K+E+G M H EPV+L V E L ++ A K + + Sbjct: 387 LIRQGAEHLNALLTEILDLAKVEAGSMPTHPEPVALPVLVHEVTELFRVSAVVKSLQLEA 446 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 + ++ D +KQI N+LSNAI FT G + +++ V DTG G Sbjct: 447 RLLPEAEQPLVTDRLRLKQILNNLLSNAIKFTAQGRVELAVEPDADGRQMLFHVTDTGPG 506 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + E + F Q + GTGLGL L++A+ G + S+P +G + Sbjct: 507 IAPELQEVIFEKFSQGNARVSYQHGGTGLGLSLSRALATLLGGTLTVQSSPGEGARFTLA 566 Query: 808 FPLYDTSHPH 817 PL PH Sbjct: 567 LPL---QAPH 573 >gi|284053658|ref|ZP_06383868.1| histidine kinase [Arthrospira platensis str. Paraca] gi|291568791|dbj|BAI91063.1| two-component sensor histidine kinase [Arthrospira platensis NIES-39] Length = 688 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 80/277 (28%), Positives = 133/277 (48%), Gaps = 23/277 (8%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + + L+ A K A + K +FL +SHE+RTPL II +I++ Sbjct: 397 VDRLQSRAQALAFATKEARVANQLKDEFLRVISHELRTPLNGIINSLNLIQDGFCDD--R 454 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 +EY + S + DIVND+LDI+ IE G+++L EP L + EAI+L L Sbjct: 455 DEEMEYLQMANDSALHLFDIVNDILDIALIEEGQLSLFLEPTDLGVILQEAIALQTLDIQ 514 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG---------------GQI 725 +K + + + + AD +KQ+ LNI++NA+ FT +G G Sbjct: 515 QKGLDLNLVLSAEPLEVQADRDKLKQVFLNIINNAVKFTQAGSITITSQLERFPNAAGNA 574 Query: 726 IISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 I S +++S +E+VI+ + DTG+G+ + + +PF + S G GLGL + Sbjct: 575 IASNSNSSQIIKASEQVIVTIVDTGIGVIREKQSQLFQPFVMVDGSTTRESGGVGLGLAI 634 Query: 781 AKAMVDANMGKFYIFSTP-AKGTLIEIIFPLYDTSHP 816 A+ +++ G + S +GT + I P + P Sbjct: 635 ARRLMEMMGGGIQLDSAGHDQGTTVTIAMPTLQAATP 671 >gi|313149047|ref|ZP_07811240.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313137814|gb|EFR55174.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 913 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 126/249 (50%), Gaps = 12/249 (4%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 ++W++ +L K+ AE KS FLA +SHEIRTPL AI+GFSE++ + +P Sbjct: 530 TKWEKMAQELKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVS-----CDDP 584 Query: 622 RYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 E Y I + L+L ++ND+LD+SKIESG + E +L + +E +++Q Sbjct: 585 EEKEEYMGIIQSNNELLLRLINDILDLSKIESGILERKRERFNLSKVCNELYTMMQPKIT 644 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + +R + I D +KQ+ +N L+NA+ T SG I + Sbjct: 645 NPEVELRLGNSGPDCWIFLDRNRLKQVWMNYLTNAVKCTHSG--YIKMGYSIEKGGIRFY 702 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D+GVG+ LE + FG+ + +GTGLGL +++A+++ GK S P Sbjct: 703 VEDSGVGIP---LEVQDRVFGRFQKLNEF-AQGTGLGLAISRAIIEGADGKVGFSSVPGV 758 Query: 801 GTLIEIIFP 809 G+ P Sbjct: 759 GSTFWAWIP 767 >gi|302791846|ref|XP_002977689.1| sensory histidine protein kinase [Selaginella moellendorffii] gi|300154392|gb|EFJ21027.1| sensory histidine protein kinase [Selaginella moellendorffii] Length = 823 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 71/266 (26%), Positives = 134/266 (50%), Gaps = 21/266 (7%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI----- 610 L + ++ + +L+ ++ AE+ S KSDFLA +SHEIRTP+ I+G S ++ Sbjct: 368 LVLQRTTQLLKANEELTASRTAAEQASQAKSDFLANMSHEIRTPIHGILGMSALVLATGL 427 Query: 611 -KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + QR + + +++L ++N +LD++KIE+G+ + +L + Sbjct: 428 TEEQR----------DNMTTVKDCADMLLHLINGILDVAKIEAGRFEVELVSFNLCHVIK 477 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 + +++ A EKR+ ++ +P +L D ++ LN++ NA+ FT G + Sbjct: 478 STLHILEPRAREKRLRLKWDVDARVPTVLVGDSGKLRHCLLNLVGNALKFTHQGYVQVTV 537 Query: 729 TTHTSN--EEVILRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMV 785 + ++ RV D+G+G++ +L KPF Q P+ ++ G GTGLGL + + V Sbjct: 538 APYVDGLYPSLVFRVSDSGIGVSRDKLSNIFKPFTQADPSISRLYG-GTGLGLCIVQRFV 596 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLY 811 + G+ + S G+ I+ P Y Sbjct: 597 ELMGGQICVESEYGTGSTFCILLPFY 622 >gi|239908296|ref|YP_002955037.1| putative chemotaxis CheB/CheR fusion protein [Desulfovibrio magneticus RS-1] gi|239798162|dbj|BAH77151.1| putative chemotaxis CheB/CheR fusion protein [Desulfovibrio magneticus RS-1] Length = 1516 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/257 (28%), Positives = 133/257 (51%), Gaps = 14/257 (5%) Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 CY DI++ +Q L A+ AE+ + KS+FLA +SHEIRTPL ++G +++++ Sbjct: 1115 CY-----DITDRRQATLDLELARFNAEEANRTKSEFLANMSHEIRTPLNGVLGMLQLLQS 1169 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + EY+ S + +++D+LD+S++E+GK+ + P L E V+ Sbjct: 1170 TSL----DVEQKEYSIAAVDSCIRLTRLLSDILDLSRVEAGKLGIQAVPFDLSETVNVVN 1225 Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 L + A E I + +IP R++ D ++Q+ N++ NA+ FT +G + S Sbjct: 1226 ELFKTQAIESGITLDFHIDQDIPKRLIGDAPRLQQVLCNLVGNALKFTHAGKIAVSSHLL 1285 Query: 732 TSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 S++ ++ + DTG+G+ + +++ PF Q+ R +G GLGL + K +V Sbjct: 1286 PSSDPKRISLMFSISDTGIGIPHDKIDLLFTPFTQVSEGYTRRHQGAGLGLSICKHLVTL 1345 Query: 788 NMGKFYIFSTPAKGTLI 804 G I S +GT + Sbjct: 1346 MGGNISISSVLGQGTTV 1362 >gi|120611300|ref|YP_970978.1| multi-sensor signal transduction histidine kinase [Acidovorax citrulli AAC00-1] gi|120589764|gb|ABM33204.1| multi-sensor signal transduction histidine kinase [Acidovorax citrulli AAC00-1] Length = 454 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 100/429 (23%), Positives = 183/429 (42%), Gaps = 61/429 (14%) Query: 401 HTIQWNRENSLA----MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 ++W R+ LA + + E A++F + QN + D R+ ++ + Sbjct: 49 RVLRWLRDGDLASSPSLRGLWGEAADRFRRLLRQNQADIAASDARLQ---------EILA 99 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 L+AT +G+ +++ EG I N+ FG + + L P +Y + Sbjct: 100 ALQATPNGVVLLDAEGHIEWCNQIAVTQFGLDAARDMGQSIGNLLRD--PEFSAYYAAQD 157 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576 S D + L + +RI + P+ L LS Sbjct: 158 FSRD-------VVLQGRESTPSRPVRISVHLHPYGDGRKLL-------------LSRDVT 197 Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 E+ + + DF+A VSHEIRTPLT ++GF E ++ PL + Y N + + Sbjct: 198 ALEQAEAMRRDFVANVSHEIRTPLTVLMGFVETLQTL---PLSSEERARYLNMMSQQAGR 254 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR----ILIRTSFAN 692 + +V DLL +S++E P L E + +L++ +E R +L R+ A Sbjct: 255 MQSVVQDLLTLSRLEGSP------PPGLTE-CTPVDALLRRCEDEARGLSALLTRSQSAG 307 Query: 693 NI------------PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 ++ +++ ++ N++ NA+ +TP+GG+I ++ ++ Sbjct: 308 HVLEFPPAEALQGAGQLIGVTAELQSALANLIGNAVRYTPAGGRITVAWETLADGSARFS 367 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 VRDTG G+ + + + + F ++ S+ GTGLGL + K +V + I ST K Sbjct: 368 VRDTGPGIESVHIPRLTERFYRVDRSRSRDTGGTGLGLAIVKHVVQRHSASLGIESTVGK 427 Query: 801 GTLIEIIFP 809 G++ + FP Sbjct: 428 GSVFSVTFP 436 >gi|144040|gb|AAA22970.1| BvgS protein [Bordetella pertussis] Length = 1238 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 81/252 (32%), Positives = 135/252 (53%), Gaps = 9/252 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E + +L AK+ A+ + K+ FLA +SHEIRTP+ AIIG E+ + Sbjct: 695 DITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPTDQEP 754 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + I+ A RS +L+++ D+LDI+KIE+GK +L +L AI + A Sbjct: 755 DRQSIQVAYDSARS---LLELIGDILDIAKIEAGKFDLAPVRTALRVLPEGAIRVFDGLA 811 Query: 680 NEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 +K I L+ + + +L D +KQ+ N++ NAI FT + GQ++++ T + + Sbjct: 812 RQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFT-TEGQVVLAVTARPDGDAA 870 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKFYI 794 V V DTG G++ + + KPF Q+ S + GTGLGL +++ +V+ G + Sbjct: 871 HVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVM 930 Query: 795 FSTPAKGTLIEI 806 S P GT + + Sbjct: 931 RSAPGVGTTVSV 942 >gi|29346228|ref|NP_809731.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29338123|gb|AAO75925.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 908 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 124/248 (50%), Gaps = 10/248 (4%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 ++W++ +L K AE KS FLA +SHEIRTPL AI+GFSE++ P Sbjct: 527 TKWEKMAQQLKELKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVYSE-DPAEKE 585 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 EY + I + L+L ++ND+LD+SKIESG + E +L + +E +++Q Sbjct: 586 ---EYMSIIQSNNELLLRLINDILDLSKIESGILERKRETFNLAKVCNELYTMIQPKITN 642 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + + + I D +KQ+ +N L+NA+ T SG I E + + V Sbjct: 643 PDVEFQMDNSGPDCWIFLDRSRLKQVWMNYLTNAVKCTKSG--YIKMGYSIEREGIRIYV 700 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+GVG+ E+ F ++ Q GTGLGL +++A+++ G+ STP G Sbjct: 701 EDSGVGIPEELQERVFGRFQKLNEFAQ----GTGLGLAISRAIIEGAGGEVGFTSTPGIG 756 Query: 802 TLIEIIFP 809 + P Sbjct: 757 STFWAWIP 764 >gi|296536415|ref|ZP_06898515.1| sensor histidine kinase/response regulator [Roseomonas cervicalis ATCC 49957] gi|296263265|gb|EFH09790.1| sensor histidine kinase/response regulator [Roseomonas cervicalis ATCC 49957] Length = 1111 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 134/249 (53%), Gaps = 6/249 (2%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 SL M +I ++ L AK+ AE + KS ++ +SHE+R+PL AI+G++++++ Sbjct: 636 SLLMSEIRAHQRTDAALQKAKEAAEAANMAKSRYVIGISHELRSPLNAILGYAQLLERDT 695 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P R + I RSG + ++ LLDISKIE+G++ L+ + + E + + + + Sbjct: 696 AIP---ERRRDGLRTIRRSGEHLAALIEGLLDISKIEAGRIELYRDEIRFPEFLDQIVQM 752 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++L A K I +P ++ D R ++QI +N+LSNAI FT +GG + + Sbjct: 753 LRLQAEAKSIAFTFDPPERMPEVVHTDERRLRQILINLLSNAIKFTRAGGVTLRLRFRSE 812 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E+ V DTG+G+ +L + +PF + NS G GLGL + K +V+ G Sbjct: 813 VAEI--EVIDTGIGIAEDDLARIFEPFQRGANSHAPSTPGVGLGLTITKTLVEVMGGDIA 870 Query: 794 IFSTPAKGT 802 ++S +G+ Sbjct: 871 VWSRLGEGS 879 >gi|325262479|ref|ZP_08129216.1| sensory box sensor histidine kinase/response regulator [Clostridium sp. D5] gi|324032311|gb|EGB93589.1| sensory box sensor histidine kinase/response regulator [Clostridium sp. D5] Length = 1294 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 81/254 (31%), Positives = 131/254 (51%), Gaps = 22/254 (8%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV----IKNQRFGPLGN 620 +Q K L A ++AE+ + KS+FL+ +SH+IRTP+ AI+G + + I +Q Sbjct: 892 RQTKRSLEKALELAEEANRAKSEFLSAMSHDIRTPMNAIMGMTALACAHIDDQ------- 944 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + + I S +L ++ND+LD+SKIE ++ L + L + + ++++ A Sbjct: 945 DKVSDCLKKISISSKHLLSLINDVLDMSKIERSQITLGRMKILLSRLMHDLAAIIEPQAR 1004 Query: 681 EKRI--LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSN 734 I +RT N + D+ + QI +NILSNAI FTP GG + Sbjct: 1005 AAGIHFYVRTDDICN-EKFYGDVLRLNQIFINILSNAIKFTPEGGTVDFMVEELPAVRCE 1063 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + V R +RDTGVG+ LE +PF + N+ ++ EGTGLGL + K +VD G Sbjct: 1064 DHVRYRFTIRDTGVGIKAEFLEHIFEPFTRSSNTSRV--EGTGLGLSITKGLVDLMGGVI 1121 Query: 793 YIFSTPAKGTLIEI 806 + S +GT+ + Sbjct: 1122 TVESKELQGTVFRV 1135 >gi|298290965|ref|YP_003692904.1| multi-sensor hybrid histidine kinase [Starkeya novella DSM 506] gi|296927476|gb|ADH88285.1| multi-sensor hybrid histidine kinase [Starkeya novella DSM 506] Length = 833 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 79/250 (31%), Positives = 124/250 (49%), Gaps = 8/250 (3%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 KLS A K+AE+ S KS FLA VSHE+RTPLTAI+G + +++ IE Sbjct: 180 RKLSAATKVAEEASQAKSLFLASVSHELRTPLTAIVGMTGLLRTTSLAS-DQREMIETVE 238 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 RS + +++ LLD+S+IE+G+M + EP L + +A LV+ A E+ + Sbjct: 239 VATRS---LRSLIDGLLDLSRIEAGRMPVPNEPFDLVALLLDARRLVEGQARERGLSFDI 295 Query: 689 SFANNIPRILADLRS-VKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDT 744 P L R + + +N++ NA+ FT GG + + + +++ V DT Sbjct: 296 HVTPRTPLGLVGSRQHLHEALVNLVGNAVKFTQQGGVTLAVDAEPAEDGRLSLVIEVSDT 355 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + E+ + F Q S R GTGLGL + + +V G + S P KG+ Sbjct: 356 GIGIAPGDQERIFEDFTQADASILNRFGGTGLGLAITRRLVALMGGTISVDSAPGKGSTF 415 Query: 805 EIIFPLYDTS 814 P+ S Sbjct: 416 RFHVPVVPAS 425 >gi|224537735|ref|ZP_03678274.1| hypothetical protein BACCELL_02618 [Bacteroides cellulosilyticus DSM 14838] gi|224520658|gb|EEF89763.1| hypothetical protein BACCELL_02618 [Bacteroides cellulosilyticus DSM 14838] Length = 775 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 78/264 (29%), Positives = 133/264 (50%), Gaps = 10/264 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI++ K + KL AK+ AE+ + KS FLA +SHEIRTPL AI+GFS ++ Sbjct: 520 TAWDITDQKILERKLRLAKEEAEESNRIKSAFLANMSHEIRTPLNAIVGFSSILAED--- 576 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + IEY + I ++ +++L ++ND+LD+SKIE+G + + + +++ +SE + Sbjct: 577 -VSEEERIEYLSIISKNNDILLQLINDILDLSKIEAGTLEYVYANIDVNKMLSEIEQAAR 635 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 + + I + D R + Q+ N +SNA+ FT +G I + Sbjct: 636 MRQPNANVAICAVMPMPDLLLYTDQRRITQVLNNFISNAMKFTNTGS-ITFGYEEPKDGY 694 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + V DTG G+ ++ F ++ + +Q GTGLGL +++ +V G+ + S Sbjct: 695 IRFFVTDTGTGIPPEKVADIFNRFVKLDSFKQ----GTGLGLAISQNIVKELKGEIGVLS 750 Query: 797 TPAKGTLIEIIFPLYDTSHPHDCI 820 KG+ P Y+ H I Sbjct: 751 ELGKGSTFWFTLP-YEKMGAHRSI 773 >gi|186682169|ref|YP_001865365.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186464621|gb|ACC80422.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 595 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 119/227 (52%), Gaps = 5/227 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +FLA +SHE+R+PL I+G++++++ ++ L + I+R+ L ++ DL Sbjct: 221 KDEFLAVLSHELRSPLNPILGWAKLLQTRK---LDEAKTAYALATIERNAKLQSQLMEDL 277 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+S+I K++L V L + A+ V+L A K I ++T F NI ++L D + Sbjct: 278 LDVSRILQRKLSLKISSVDLSAVIEVALDTVRLAAQAKSIELKTEFEPNIGQVLGDPSRL 337 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +Q+ N+LSNA+ FT GGQ+ I + I +V DTG G+ L F Q Sbjct: 338 QQVVWNLLSNAVKFTEDGGQVEIRLERVGTQAQI-QVSDTGKGINPEFLPHVFDYFRQAD 396 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPL 810 N+ G GLGL +A+ +++ + G S KG ++ P+ Sbjct: 397 NTTTRTFGGLGLGLAIARQIIELHGGAIQAESEGDDKGATFTVLLPI 443 >gi|322706963|gb|EFY98542.1| histidine kinase 1 [Metarhizium anisopliae ARSEF 23] Length = 1293 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 131/251 (52%), Gaps = 14/251 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 IS + + + A++ AE + KS+FLA +SHEIRTP+ IIG +++ + Sbjct: 688 ISNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDL----T 743 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 E N ++ N +L I++D+LD+SKIE+ +M + P +L V A+ + + AN Sbjct: 744 QYQREMLNIVNNLANSLLTIIDDILDLSKIEARRMVVEEIPYTLRGTVFNALKTLAVKAN 803 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI- 738 EK + + +++P ++ D ++QI LN++ NAI FT G++ ++ +N+ + Sbjct: 804 EKFLDLTYKVDSSVPDHVIGDSFRLRQIILNLVGNAIKFTEH-GEVSLTIKERANQHEVG 862 Query: 739 -------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 V DTG+G+ +L F Q S + GTGLGL ++K +V+ G Sbjct: 863 MGEYAIEFVVEDTGIGIAKDKLNLIFDTFQQADGSMTRKFGGTGLGLSISKRLVNLMGGD 922 Query: 792 FYIFSTPAKGT 802 ++ S KG+ Sbjct: 923 LWVLSEAGKGS 933 >gi|315122049|ref|YP_004062538.1| two-component sensor histidine kinase protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495451|gb|ADR52050.1| two-component sensor histidine kinase protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 792 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 94/352 (26%), Positives = 172/352 (48%), Gaps = 21/352 (5%) Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 S+G+A+ +G I +N L + VE+ P T +N S + Y + DL Sbjct: 442 SEGVAVFGPDGRIQLSNPVFRSL--WKVEEEQVSPGTHI--RNIASTCSKYYNKSDGWDL 497 Query: 522 RQTL------EKITLGSTKEEKLLS---LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 + E+ +L T E LLS L + LP + LT ++++ + + L+ Sbjct: 498 FAAIITSFEDERKSLQGTLE--LLSDAVLEYSVIPLPNAQTM-LTFVNVTDSVRAERALT 554 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 + K K++F+ VS+E+R+PLT IIGF++++K + G L NP+ +Y YI Sbjct: 555 EKNEALHKADEIKNNFVQHVSYELRSPLTNIIGFTDLLKTSKLGGL-NPKQSQYVEYIST 613 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 S L+L++VND+LD++ + +G M L++ + L + ++E + +E I + Sbjct: 614 SSELLLNLVNDILDLATVNAGIMKLNYSEIILSDLLNEVKQSIASKMHENNITLEIVSRK 673 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 + ++AD + + QI ILSNA F+ G +++ + + + V G + Sbjct: 674 ALGSVVADRQRLLQIFAKILSNAADFSSKGSTVLLEADRDATD-FVFSVTSNGSNIPEDM 732 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 + F + +S + G GLGL + K+ ++ + G +I S+P +GT I Sbjct: 733 RQNVFNGF--VSDSHHGQRRGMGLGLSIVKSFLNLHGGSVFI-SSPHEGTTI 781 >gi|224539516|ref|ZP_03680055.1| hypothetical protein BACCELL_04421 [Bacteroides cellulosilyticus DSM 14838] gi|224518864|gb|EEF87969.1| hypothetical protein BACCELL_04421 [Bacteroides cellulosilyticus DSM 14838] Length = 997 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 129/252 (51%), Gaps = 15/252 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+ K+ + L AK+ AE+ + KS FLA +SHEIRTPL AI+GFS ++ + Sbjct: 613 ITGRKKMEEDLITAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSSILADAE----EP 668 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 EY N I+ + L+L +V D+LD+SKIESG + + + L+ E +L Sbjct: 669 EEKEEYINIIENNNTLLLQLVGDILDLSKIESGTLEFVYSDIDLNALFQELEESARLRQK 728 Query: 681 EKRILIRTSFANNIPRILADLRS--VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 ++IR + +P ++ + Q+ N+++NA+ FTPSG I H N + + Sbjct: 729 NDAVVIR--YLPEMPDCFVNIEKNRLTQVVTNMMNNAMKFTPSGS--ITFGYHLKNTDFL 784 Query: 739 -LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + DTG G+ E +K FG+ +GTGLGL + +++V+ G+ + S Sbjct: 785 YFYITDTGYGI---EKDKKDTVFGRFVKLDSF-SQGTGLGLSICQSIVENLGGEIGVESE 840 Query: 798 PAKGTLIEIIFP 809 P KG+ P Sbjct: 841 PGKGSTFWFTLP 852 >gi|221641063|ref|YP_002527325.1| Multi-sensor hybrid histidine kinase [Rhodobacter sphaeroides KD131] gi|221161844|gb|ACM02824.1| Multi-sensor hybrid histidine kinase precursor [Rhodobacter sphaeroides KD131] Length = 825 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 105/380 (27%), Positives = 176/380 (46%), Gaps = 43/380 (11%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE-----DILRKPFTVFLE-QNTP 506 +L +I ++D I + + ++ NRA +FG+ E D + F L+ + Sbjct: 199 RLEAIFRISADAILVTDWSARVIDCNRAALAIFGHQRERLAGADAMELLFPAELQGRQRM 258 Query: 507 SVMNHYLTEILSLD--LRQTLEKITLGSTK---EEKLLSLRI----IIKKLPFSSCYSLT 557 V++ +D LR LE + ++ E L + R+ II L Sbjct: 259 RVVDALRNSDPRIDGPLRLELEAVHADGSRFPVEVSLAAARVEGEDIIVAL--------- 309 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 M DIS ++ + +L+ A+ A K+DFLA +SHE+RTPL + G E++ P Sbjct: 310 MRDISARRRAERELTEARDRALAGEQTKADFLAVMSHEMRTPLNGLAGSLELLAQT---P 366 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 L +PR E + + S ++LD VN +LDI++ E+ LD + + I+ Sbjct: 367 L-DPRQRELVSVLRASAEILLDHVNSVLDIARSEARPSVAEMVDFDLDRLIEDCIANQSG 425 Query: 678 YA-------NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 +A + + + N P+ L +Q+ LN+L+NA+ FT +G I+ S Sbjct: 426 FAAVVGNRIDHRPLTGPVGILNGEPQRL------RQVLLNLLNNAVKFTRNGRIIVESEV 479 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 ++ E+ RV DTG+G+ LEK F + S + R GTGLGL +A+ + G Sbjct: 480 QGADVEI--RVLDTGIGIAPENLEKVFDDFVTLDASYERRSGGTGLGLGIARRLARIMGG 537 Query: 791 KFYIFSTPAKGTLIEIIFPL 810 + STP +G+ + PL Sbjct: 538 DLTVQSTPGRGSRFTLRLPL 557 >gi|218282118|ref|ZP_03488417.1| hypothetical protein EUBIFOR_00992 [Eubacterium biforme DSM 3989] gi|218216911|gb|EEC90449.1| hypothetical protein EUBIFOR_00992 [Eubacterium biforme DSM 3989] Length = 1024 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 78/265 (29%), Positives = 141/265 (53%), Gaps = 12/265 (4%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T H+ + +EK +L++ K + ES K+DF+ R+SH+IRTP+ I+G ++I+ + +G Sbjct: 636 TFHEKEDRDKEKLQLAYQK--VDLESKAKTDFMNRMSHDIRTPINGILGMMQIIR-KNWG 692 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + + N ++ + ++V D+L++SK+ES M + EP L V E SL+ Sbjct: 693 DM--DKLDDSLNKMEVLTKHLNELVEDILNMSKLESDHMEIVNEPFDLKCLVEELNSLID 750 Query: 677 LYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + + I N + ++ D +++I +N+L+NAI + S G I + S++ Sbjct: 751 AEISLQNITYHNHMENVVHTHLIGDALQLRRILINLLTNAIKYNKSNGTIDMFVREMSSD 810 Query: 736 EVIL----RVRDTGVGMTNYELEKAM-KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + ++DTG+GM+ +E + PF Q + R EGTGLG+ + K +VD G Sbjct: 811 DSKVTFEFEIKDTGIGMSEDYIENHLFTPFSQAKQDARTRYEGTGLGMSIVKGLVDKLGG 870 Query: 791 KFYIFSTPAKGTLIEIIFPL-YDTS 814 + S GT I+++ DTS Sbjct: 871 NIDVKSEVGVGTQIKVVLTYQLDTS 895 >gi|134281863|ref|ZP_01768570.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 305] gi|134246925|gb|EBA47012.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 305] Length = 769 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 100/380 (26%), Positives = 172/380 (45%), Gaps = 23/380 (6%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +R+ L ++EA+ D I + I S N A ++FGY ++ + V + Sbjct: 245 ERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGY--DEHAARGCDVAMLI 302 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSC--YSLT 557 + NH L E + D+R+ +E + + +++ +R + P +C SLT Sbjct: 303 APRWLRNHPLPESVP-DMREPIENVDVLCVRQDGG-RMRATMSASPVFDERDACIALSLT 360 Query: 558 MHDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + D E ++ + A++ A+ + K + LA VSHE+RTPL I G+ EV+ Sbjct: 361 LRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVL 420 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +N P+ + + IDRS + +V D+LD S + +GK+ L PV L V++ Sbjct: 421 RN----PVDGALQQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVND 476 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + A I + A + D ++Q+ N+LSNA FTP GG++ +S Sbjct: 477 VTGALGAAAQADGIALSVECALGTCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLE 536 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + L V DTG G++ L + F + + G GLGL + + + + + G Sbjct: 537 R-HDAQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGG 595 Query: 791 KFYIFSTPA-KGTLIEIIFP 809 K S +GT I P Sbjct: 596 KVEAASAGKNRGTTFAITLP 615 >gi|86144789|ref|ZP_01063121.1| hypothetical two-component sensor [Vibrio sp. MED222] gi|85837688|gb|EAQ55800.1| hypothetical two-component sensor [Vibrio sp. MED222] Length = 808 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 80/255 (31%), Positives = 132/255 (51%), Gaps = 20/255 (7%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 I +Q+ +L AK AE + +KS+FLA +SHEIRTP+ IIG S ++ + Sbjct: 217 QSIERIRQQYQELEKAKDTAEVANRNKSEFLANMSHEIRTPMNGIIGLSSLLSE-----M 271 Query: 619 GNPR-YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 P+ EY + ++ S +LD++ND+LD SKIE+G++ L EP+ + ++ S ++ Sbjct: 272 DMPKEQKEYVDMLNTSSLTLLDLINDILDYSKIEAGRLELQQEPMKMMGIAADVESTFRV 331 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A +K + + + IP ++ D ++Q+ N++ NAI FT G +++S EE Sbjct: 332 KAEQKGLKFQLAIDPKIPTMVIGDGTQLRQVLNNLVGNAIKFTEH-GHVMLSLRL---EE 387 Query: 737 VI-----LRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 VI LRV+ D+G+G+ + + F Q S GTGLGL + +V Sbjct: 388 VIEPEQKLRVKFEVTDSGIGIAEDKQQSVFDKFQQADGSTTRIYGGTGLGLTICDKIVTL 447 Query: 788 NMGKFYIFSTPAKGT 802 K + S KG+ Sbjct: 448 MGSKLELTSVVGKGS 462 >gi|329965407|ref|ZP_08302331.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057] gi|328522199|gb|EGF49313.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057] Length = 894 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 120/251 (47%), Gaps = 11/251 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E ++ K +L AK+ AE KS FLA +SHEIRTPL AI+GFS +I Sbjct: 487 DITEMERMKRELLVAKEKAEASDQLKSAFLANMSHEIRTPLNAIVGFSRIIAE----STD 542 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + Y + + +L ++N++LD+SKIE+G + PV L E Sbjct: 543 ADERLNYYEIVAVNNERLLQLINEILDLSKIEAGIVEFTITPVRLHSLCKEIYDAHVFRC 602 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + LI S I I D + Q+ N++ NA FT +G I H + V+ Sbjct: 603 PQGVELIYESSDEGIV-IDGDKNRLFQVVSNLIGNAFKFTTNGK--ISYGYHREGDYVVF 659 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG G+ +L++ + F ++ Q GTGLGL + K +++ G + S Sbjct: 660 HVNDTGSGIAADKLDRIFERFVKVNTFAQ----GTGLGLSICKTIIERMGGNISVSSEIG 715 Query: 800 KGTLIEIIFPL 810 KGT I PL Sbjct: 716 KGTTFTFILPL 726 >gi|302392020|ref|YP_003827840.1| multi-sensor signal transduction histidine kinase [Acetohalobium arabaticum DSM 5501] gi|302204097|gb|ADL12775.1| multi-sensor signal transduction histidine kinase [Acetohalobium arabaticum DSM 5501] Length = 723 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 93/351 (26%), Positives = 174/351 (49%), Gaps = 19/351 (5%) Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTV-FLEQNTPSVMNHYLTEILSLDLRQTLE 526 ++R G + NR ++ G E++L +T F+++ + + +L ++ Sbjct: 352 LDRTGKVELLNRKGCEILGVKEEEVLGHDWTENFVKEEDSAETKQIINSLLEGEIINDKN 411 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSL-TMHDISEWKQEKNKLSHAKKIAEKESSHK 585 +I S +E K+L ++K L T DI+E + K K+++ K K Sbjct: 412 RIITKSGEERKILWHNAVLKDEQSQMNKILSTGIDITEVESLKEKVAYNK--------LK 463 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIK--NQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 +F A +SHE RTPL I ++++ ++ P + + +Y I ++G +L + N+ Sbjct: 464 MEFFANISHEFRTPLNLIFSAQQMLEMYQKKLEPEQSSKMGKYTTIIKQNGRRLLRLANN 523 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--ILADL 701 L+DI+K++SG L E ++ V + V + K + F + I I D Sbjct: 524 LIDITKMDSGSFELELENCNIVSLVRKVACSVAEHIEYKEL--EFEFDSEIEEKIIACDP 581 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 +++++ LN+LSNA+ FT G ++ ++ +T +V++ V+DTG+G++ + E K FG Sbjct: 582 FNIERVILNLLSNAVKFTDIGDKVSVNI-YTEEGKVLISVKDTGIGISQEKQELIFKRFG 640 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 Q S EGTG+GL + K++V+ + G+ + S G+ E I L D Sbjct: 641 QADKSFTRSNEGTGIGLSIVKSIVELHNGQISVESEEGVGS--EFIIELSD 689 >gi|295707318|ref|YP_003600393.1| two-component sensor histidine kinase WalK [Bacillus megaterium DSM 319] gi|294804977|gb|ADF42043.1| two-component sensor histidine kinase WalK [Bacillus megaterium DSM 319] Length = 635 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 92/374 (24%), Positives = 168/374 (44%), Gaps = 45/374 (12%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E E +L S+L +DG+ +R+G ++ N + + E +L P L+ Sbjct: 287 EGERRKLSSVLAHMTDGVIATDRKGRVILINDPAAAMLNVSRETVLSDPVVSLLDLEETH 346 Query: 508 VMNHYLT--EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 L E L LD + L +T + I K+ F + + +HDI+E Sbjct: 347 TFESLLANQESLILDFSTKSDPFILRAT-------ISAIQKETGFINGIIIVLHDITE-- 397 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----KNQRFGPLGN 620 EK + +F+A VSHE+RTPLT + + + + +++ P Sbjct: 398 ------------QEKIDQDRREFVANVSHELRTPLTTMRSYLDALAEGAWQDKDLAP--- 442 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + N ++ +VNDLL +SK++S +P++ + I ++ Sbjct: 443 ----TFLNVTQTETERMIRLVNDLLQLSKLDSQDYRFSRDPINFVKFYHYIIDRFEMTIE 498 Query: 681 EKRILIRTSFANNIPR----ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 + SF ++P + D + Q+ NI+SNAI ++P GG I S ++E Sbjct: 499 QG-----ISFVRDLPNEAIYVAIDQDKITQVLDNIISNAIKYSPEGGIITFSIAQHTHE- 552 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +++ ++D G+G+ L K + F ++ ++ + GTGLGL +AK +++A+ G+ + S Sbjct: 553 IVVSIKDQGMGIPKSNLAKIFERFYRVDKARTRKLGGTGLGLAIAKEIIEAHDGRIWADS 612 Query: 797 TPAKGTLIEIIFPL 810 KGT I P+ Sbjct: 613 QEGKGTTIYFTLPI 626 >gi|262198449|ref|YP_003269658.1| integral membrane sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] gi|262081796|gb|ACY17765.1| integral membrane sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] Length = 699 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 125/243 (51%), Gaps = 5/243 (2%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L HA+ AE+ S KS FL +SHE+RTPL AI+G++E+++ + + R+ + N I Sbjct: 452 LRHARDAAERASRAKSTFLTNMSHELRTPLNAILGYTELLREEAVEQGESARFSDLDN-I 510 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 ++G +L +V +LLD+++IE+GK+ L V L V ++ V + + Sbjct: 511 HQAGVHLLGLVEELLDLARIEAGKVTLIEVEVELSAVVKRSLQTVAPVVEKNGNRMELDL 570 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGV 746 A+++ R D +QI +N+L NA FT +G + ++++ + L V DTG Sbjct: 571 ASDLGRARLDEGKTRQILINLLGNAAKFTENGVITVRGRRRAADDDGPDIISLAVIDTGA 630 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ LEK +PF S G GLGL L++ + + G+ S +G++ + Sbjct: 631 GIVAERLEKIFEPFETGDTSSTREFGGMGLGLSLSRKLAEHMGGRLVATSELGEGSVFTL 690 Query: 807 IFP 809 P Sbjct: 691 ELP 693 >gi|126456548|ref|YP_001077059.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1106a] gi|167908208|ref|ZP_02495413.1| sensor kinase/response regulator fusion protein [Burkholderia pseudomallei NCTC 13177] gi|167924404|ref|ZP_02511495.1| sensor kinase/response regulator fusion protein [Burkholderia pseudomallei BCC215] gi|242313239|ref|ZP_04812256.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1106b] gi|126230316|gb|ABN93729.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1106a] gi|242136478|gb|EES22881.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1106b] Length = 771 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 100/380 (26%), Positives = 172/380 (45%), Gaps = 23/380 (6%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +R+ L ++EA+ D I + I S N A ++FGY ++ + V + Sbjct: 245 ERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGY--DEHAARGCDVAMLI 302 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSC--YSLT 557 + NH L E + D+R+ +E + + +++ +R + P +C SLT Sbjct: 303 APRWLRNHPLPESVP-DMREPIENVDVLCVRQDGG-RMRATMSASPVFDERDACIALSLT 360 Query: 558 MHDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + D E ++ + A++ A+ + K + LA VSHE+RTPL I G+ EV+ Sbjct: 361 LRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVL 420 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +N P+ + + IDRS + +V D+LD S + +GK+ L PV L V++ Sbjct: 421 RN----PVDGALQQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVND 476 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + A I + A + D ++Q+ N+LSNA FTP GG++ +S Sbjct: 477 VTGALGAAAQADGIALSVECALGTCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLE 536 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + L V DTG G++ L + F + + G GLGL + + + + + G Sbjct: 537 R-HDAQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGG 595 Query: 791 KFYIFSTPA-KGTLIEIIFP 809 K S +GT I P Sbjct: 596 KVEAASAGKNRGTTFAITLP 615 >gi|312959863|ref|ZP_07774378.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens WH6] gi|311285810|gb|EFQ64376.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens WH6] Length = 633 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/258 (27%), Positives = 128/258 (49%), Gaps = 9/258 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E +Q +L ++ AE+ ++ KSDFLA +SHE+RTP+ ++G ++++ Sbjct: 243 EQQQAMAQLIQTREEAERANNAKSDFLAMMSHELRTPMNGVLGMLQLLETTEM----TEE 298 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 EYA S +L ++ND+LD S+IE + L P +L + ++ Q A ++ Sbjct: 299 QTEYAALASESTEHLLKVINDILDFSRIERAALELEHIPFNLADLINSCAQAFQHSAQQR 358 Query: 683 RILIRTSFANNIP--RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-- 738 + + A + ++ D ++QI +N++ NA+ FT G + S + E++ Sbjct: 359 GLTLTLGVAQGLEALKVQGDPTRIRQILVNLIGNALKFTEHGTVSVESDWQPLDHELVWF 418 Query: 739 -LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 VRD+G+G++ LE+ F Q +S R GTGLGLP+A+ + + G S Sbjct: 419 TCIVRDSGIGISTERLERMFDAFQQADSSISRRYGGTGLGLPIARTLAERMGGTLRAESE 478 Query: 798 PAKGTLIEIIFPLYDTSH 815 G++ + PL H Sbjct: 479 EGLGSVFTLEIPLAIDQH 496 >gi|167899886|ref|ZP_02487287.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 7894] Length = 771 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 100/380 (26%), Positives = 172/380 (45%), Gaps = 23/380 (6%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +R+ L ++EA+ D I + I S N A ++FGY ++ + V + Sbjct: 245 ERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGY--DEHAARGCDVAMLI 302 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSC--YSLT 557 + NH L E + D+R+ +E + + +++ +R + P +C SLT Sbjct: 303 APRWLRNHPLPESVP-DMREPIENVDVLCVRQDGG-RMRATMSASPVFDERDACIALSLT 360 Query: 558 MHDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + D E ++ + A++ A+ + K + LA VSHE+RTPL I G+ EV+ Sbjct: 361 LRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVL 420 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +N P+ + + IDRS + +V D+LD S + +GK+ L PV L V++ Sbjct: 421 RN----PVDGALQQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVND 476 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + A I + A + D ++Q+ N+LSNA FTP GG++ +S Sbjct: 477 VTGALGAAAQADGIALSVECALGTCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLE 536 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + L V DTG G++ L + F + + G GLGL + + + + + G Sbjct: 537 R-HDAQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGG 595 Query: 791 KFYIFSTPA-KGTLIEIIFP 809 K S +GT I P Sbjct: 596 KVEAASAGKNRGTTFAITLP 615 >gi|119485730|ref|ZP_01620005.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119457055|gb|EAW38182.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1225 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 80/269 (29%), Positives = 137/269 (50%), Gaps = 27/269 (10%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K+ A+ + KS+FLA +SHE+RTPL AI+GF++++ + + +Y+E I R+G Sbjct: 735 KEAADAANLAKSEFLASMSHELRTPLNAILGFAQLMNYDSSIKVEHHQYLE---IISRAG 791 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L+++ND+L++SKIE+G++ L + L + ++ L A K +L+ + Sbjct: 792 EHLLNLINDILEMSKIEAGRVTLTEDDFDLLHLLENLEKMLCLKAQSKGLLLTFELDETL 851 Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS-------TTHTSNEEV---ILRVR- 742 P+ + D + ++Q+ +N+L NA FT SG + S T N + LR+R Sbjct: 852 PQWVRGDEKKLRQVLINLLGNATKFTESGCVTLRSFRVNQAKVRETENSLIKNDALRIRF 911 Query: 743 ---DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 DTG+G+ EL++ + F Q + GEGTGLGL +++ V G+ + S Sbjct: 912 EVADTGLGIAENELKRLFQAFSQTTTGLK-SGEGTGLGLSISQQFVQLMGGEITVKSQVN 970 Query: 800 KGTLIEIIFPL--------YDTSHPHDCI 820 G+ P+ Y HP I Sbjct: 971 VGSTFAFEIPMSCTQAQNKYRNYHPDPVI 999 >gi|39726389|gb|AAR30137.1| putative histidine kinase HHK2p [Gibberella moniliformis] Length = 2072 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 80/262 (30%), Positives = 130/262 (49%), Gaps = 22/262 (8%) Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 +S Y + DI++ K + KL A + K FL+ +SHEIRTPL I G + Sbjct: 1382 ASSYFGSATDINDHKLLETKLKEAMET-------KGRFLSNMSHEIRTPLIGISGMVSFL 1434 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 ++ N ++Y N I S N ++ I+ND+LD+SK+++G M L +E + + Sbjct: 1435 QDTTL----NEEQLDYTNTIQTSANSLIMIINDILDLSKVDAGMMKLKYEWFHTRSIIED 1490 Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI---- 725 LV A KR+ + ++P + D ++Q+ LN+ NAI FT S G++ Sbjct: 1491 VNELVSTMAIAKRLELNYLVEADVPAWVKGDKVRIRQVLLNVTGNAIKFT-SEGEVFSRC 1549 Query: 726 ---IISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 + +H E++L V DTG G + E E KPF QI S + G+GLGL + Sbjct: 1550 RVYVAEGSHVDENEIMLEFSVTDTGRGFSKEEAELIFKPFSQIDGSSTRQHGGSGLGLVI 1609 Query: 781 AKAMVDANMGKFYIFSTPAKGT 802 ++ + + + G +T KG+ Sbjct: 1610 SRQLAELHGGSMTGRATLGKGS 1631 >gi|237716144|ref|ZP_04546625.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262407756|ref|ZP_06084304.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|294647233|ref|ZP_06724831.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294809621|ref|ZP_06768313.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229443791|gb|EEO49582.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262354564|gb|EEZ03656.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|292637413|gb|EFF55833.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294443164|gb|EFG11939.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 644 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 126/232 (54%), Gaps = 12/232 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K EK+ L AK AE+ + KS FLA +SHEIRTPL +I+GFS+V+ G Sbjct: 400 KSEKD-LRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLA---VGGSTEEEQQ 455 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL--YANEK 682 Y I + +L+L ++ND+LD+S++E+ ++ L +E + + S+ ++ V ++E Sbjct: 456 SYYQIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQSSEN 515 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + L TSF + R++ D++ ++Q+ +N+LSNA FT G + + + + + V Sbjct: 516 QFLFTTSFESF--RMVTDVQRMQQVMINLLSNANKFTKCGKITLDFSVNEETQMAVFSVT 573 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 DTG G+ + + F ++ Q GTGLGL + K +V G +I Sbjct: 574 DTGCGIPKEKQGLVFERFEKLNEYAQ----GTGLGLSICKLIVHKWKGSIWI 621 >gi|171689430|ref|XP_001909655.1| hypothetical protein [Podospora anserina S mat+] gi|170944677|emb|CAP70788.1| unnamed protein product [Podospora anserina S mat+] Length = 2424 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 21/226 (9%) Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 K+AE+ + KS FLA VSHE+RTPL +IG SE++++ N +E A+ I S + Sbjct: 1934 KLAEEATKAKSIFLANVSHELRTPLNGVIGNSELLRDSGL----NREQMEMADSIRVSAD 1989 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN--- 692 L+L ++ND+LD S++E+ KM L+ + +E V E + V Y+N + +TS N Sbjct: 1990 LLLTVINDILDFSRMEADKMKLYIIAFNPEEMVREVVRAVS-YSNRE----KTSKKNVKI 2044 Query: 693 ----NIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRD 743 N+P +L D + Q+ N++ N++ FT G I I + V+D Sbjct: 2045 VQDINLPPMLIYGDPIRLHQVLGNLIGNSLKFTEDGSITIGARIDEETPDKATLTFWVKD 2104 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 TG+G++ LE +PF Q S + G+GLGL + K++++ M Sbjct: 2105 TGIGISQQHLENLFQPFSQADASTARKYGGSGLGLSICKSLIETMM 2150 >gi|325273498|ref|ZP_08139736.1| integral membrane sensor hybrid histidine kinase [Pseudomonas sp. TJI-51] gi|324101374|gb|EGB98982.1| integral membrane sensor hybrid histidine kinase [Pseudomonas sp. TJI-51] Length = 644 Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 78/269 (28%), Positives = 135/269 (50%), Gaps = 16/269 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E +Q +L A++ AE+ + KSDFLA +SHE+RTP+ ++G ++++ PL N Sbjct: 243 AEQQQTIAELIQAREEAEQANRAKSDFLAMMSHELRTPMNGVMGMLQLLETT---PLSNE 299 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + +Y S +L ++ND+LD S+IE + L +L E ++ ++ Q A + Sbjct: 300 QA-DYTAVASESTGHLLKVINDILDFSRIERAALQLEHIDFNLGELITSSVQSFQHSAQQ 358 Query: 682 KRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI- 738 + + + +I ++ D ++QI LN++ NA+ FT G + + + ++I Sbjct: 359 RGLGLHLQLPADIDQLQVNGDPTRIRQILLNLVGNALKFTERGQVQVEARWQVVDRQLIW 418 Query: 739 --LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 VRDTG+G+ + LE F Q +S R GTGLGL +A+ + + GK S Sbjct: 419 LTCSVRDTGIGIDSDRLEMMFVAFQQADSSISRRYGGTGLGLSIARTLAERMGGKLRGES 478 Query: 797 TPAKGTLIEIIFPLYDTS-------HPHD 818 +G+ + PL S HP D Sbjct: 479 HVGQGSTFTLEMPLALASQAPAPLPHPLD 507 >gi|225388143|ref|ZP_03757867.1| hypothetical protein CLOSTASPAR_01878 [Clostridium asparagiforme DSM 15981] gi|225045804|gb|EEG56050.1| hypothetical protein CLOSTASPAR_01878 [Clostridium asparagiforme DSM 15981] Length = 848 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 132/235 (56%), Gaps = 13/235 (5%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FL+ +SH+IRTP+ AIIG +++ + P+ + + ID SG L++ ++ND+ Sbjct: 330 KSRFLSNMSHDIRTPMNAIIGMTKIAQEHLEEPV---KVKDCLKKIDLSGRLLVGLINDI 386 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQ--LYANEKRILIRTSFANNIPRILADLR 702 LD+SKIESGKM L+ + SL E + +S+ Q +++ ++ IR + R++ D Sbjct: 387 LDMSKIESGKMVLNNDTASLVELMQNLVSITQPTVFSKKQVFNIRLHDIRH-ERLIFDSL 445 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAM 757 + Q+ +N++ NA+ FTP GG I + T + ++ +V DTG+G++ + Sbjct: 446 RLNQVLINLMGNAVKFTPEGGSISLDVTEEPAVDDQFVHLVFKVADTGIGISREFQKNLF 505 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPL 810 F + +S+ + EG+GLGL + K +V G + S +G++ +E+ P+ Sbjct: 506 SSFTRERDSKIDKIEGSGLGLAITKMIVTMMGGTIAVESELGQGSVFTVELDLPV 560 >gi|224539382|ref|ZP_03679921.1| hypothetical protein BACCELL_04287 [Bacteroides cellulosilyticus DSM 14838] gi|224519002|gb|EEF88107.1| hypothetical protein BACCELL_04287 [Bacteroides cellulosilyticus DSM 14838] Length = 817 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 80/250 (32%), Positives = 121/250 (48%), Gaps = 11/250 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E + K +L AK+ AE KS FLA +SHEIRTPL AI+GFS +I Sbjct: 416 DITEMELMKRELMVAKEKAETSDQLKSAFLANMSHEIRTPLNAIVGFSRIIAESE----N 471 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 EY N ++ + +L ++N++LD+SKIE+G + V L E I ++ Sbjct: 472 TEERKEYYNIVEANNERLLQLINEILDLSKIEAGIVEFSIAAVRLHPLCKE-IHDAHVFR 530 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + +R ++ I +D + Q+ N++ NA FT G I H E ++ Sbjct: 531 CPSDVELRFDPSDEDILIDSDKNRIFQVISNLIGNAFKFTTKGS--ISYGYHREGETIVF 588 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG G+ ++ K + F + N Q GTGLGL + K +++ GK + S Sbjct: 589 HVTDTGTGIAPEKIGKVFERFVKANNFAQ----GTGLGLAICKTIIERLGGKISVTSELE 644 Query: 800 KGTLIEIIFP 809 KGT P Sbjct: 645 KGTTFIFTLP 654 >gi|254512907|ref|ZP_05124973.1| sensory box sensor histidine kinase/response regulator [Rhodobacteraceae bacterium KLH11] gi|221532906|gb|EEE35901.1| sensory box sensor histidine kinase/response regulator [Rhodobacteraceae bacterium KLH11] Length = 478 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 132/234 (56%), Gaps = 7/234 (2%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSH---KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 +S ++ + ++ +K EK + KS+F++ +SHE+RTPLT+I G ++ ++ + G Sbjct: 224 LSVYRAQLAQMELLRKEHEKSRAAYKAKSEFVSTMSHELRTPLTSIKGSVDLAQSGKLGK 283 Query: 618 LGNPRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + A R+ + +L +++ +LD ESG+M + L E +++ S V+ Sbjct: 284 --TSKNVSAALKMAQRNCDRLLKLIDQILDFQSAESGQMTFERQRFDLVELITDTFSSVR 341 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A+EK I +R+ F + I D + ++Q+ NIL+NAI+F+P I++ T N + Sbjct: 342 PSASEKGISLRSEFPDREVEITGDKQRLQQVIDNILTNAINFSPKDSDIVV-FLQTDNGK 400 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 V + RDTG+G++ + + PF Q+ +S GTGLGL +++ +V+A+ G Sbjct: 401 VRILFRDTGIGLSESDEARVFDPFTQLDSSDSRSIGGTGLGLSVSRQIVEAHGG 454 >gi|170680522|ref|YP_001744413.1| sensory histidine kinase AtoS [Escherichia coli SMS-3-5] gi|218700688|ref|YP_002408317.1| sensory histidine kinase AtoS [Escherichia coli IAI39] gi|170518240|gb|ACB16418.1| sensory box histidine kinase AtoS [Escherichia coli SMS-3-5] gi|218370674|emb|CAR18483.1| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia coli IAI39] Length = 608 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 92/398 (23%), Positives = 187/398 (46%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 229 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 288 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 289 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 341 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 342 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 396 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q + + EY + + + + + ++ LL+ S+ Sbjct: 397 AHEVRNPLTAIRGYVQILRQQTSDLI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 452 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 453 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL 508 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 509 INAVQAISARGKIRIRTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFF------TTKAS 562 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 563 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 600 >gi|254248418|ref|ZP_04941738.1| Signal transduction histidine kinase [Burkholderia cenocepacia PC184] gi|124874919|gb|EAY64909.1| Signal transduction histidine kinase [Burkholderia cenocepacia PC184] Length = 685 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 100/379 (26%), Positives = 165/379 (43%), Gaps = 26/379 (6%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L +++A+ D I + I S N A + +FG D + + P + + Sbjct: 162 LRRVVDASPDAIVGTDAARRITSWNPAAASIFGI---DTAQASGRDIVTMIAPRWLRRHA 218 Query: 514 TEILSLDLRQTLEKITLGSTKE-----EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568 DLR + + + + + I+ + SLT+ + E + + Sbjct: 219 VPASFADLRAPVGPLDVLCVRSNGGRFRATFAASPIVDAQGHCAGLSLTLREAGE--RRR 276 Query: 569 NKLSHAKKI---------AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 N+ H + + A+ + K + LA VSHE+RTPL I G+ EV++N G Sbjct: 277 NERHHLRSLRGARDARVQADASNRLKDELLATVSHELRTPLNVIYGWVEVLRNAD----G 332 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + IDRS + +V DLLD S + +G++ L PV L V +A + A Sbjct: 333 QGFAQQAVDAIDRSARSLSHMVADLLDASSLATGRLRLERVPVDLVRIVRDAARELDATA 392 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 +++ T +A I AD ++Q+ N+LSNAI FTP GG+I +S T + E V L Sbjct: 393 QANGLVLSTEYAMPACVIPADGERLRQVLSNLLSNAIKFTPPGGRINVSLTR-AGERVRL 451 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG G+ L F + + G GLGL + + + + G+ S A Sbjct: 452 SVSDTGQGIAPEYLPHLFDTFSRPEGAFTSPKRGLGLGLSIVRNIAQLHGGEVVATSAGA 511 Query: 800 -KGTLIEIIFPL-YDTSHP 816 +G + + P +D P Sbjct: 512 GRGMTVTVTLPAGWDADDP 530 >gi|302672251|ref|YP_003832211.1| two component system histidine kinase/response regulator hybrid protein [Butyrivibrio proteoclasticus B316] gi|302396724|gb|ADL35629.1| two component system histidine kinase/response regulator hybrid protein [Butyrivibrio proteoclasticus B316] Length = 1031 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 77/256 (30%), Positives = 135/256 (52%), Gaps = 13/256 (5%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 ++ ++D ++ + ++L A AE + K+ FLA +SH+ RTP+ AI GF+ +I Sbjct: 495 AIALYDRTQEIRRNHQLQEALNAAETANKAKTSFLANMSHDFRTPMNAITGFNLLIDKHA 554 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P + EY + I + +L ++ND+LD+SKIESGK L + V + + E S+ Sbjct: 555 EEP---DKVKEYTHKISLASQNLLSMLNDVLDMSKIESGKTTLDIKEVPIGLLLEEINSV 611 Query: 675 VQLYA---NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI--IIST 729 + A N++ I+ ++I + D + + +I +NIL NAI +TP GG+I I+ Sbjct: 612 ISFQAKNKNQEYIVKIEDMQHDI--FMGDKQRINEILMNILGNAIKYTPEGGRIEFTINE 669 Query: 730 THTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + +S+E V ++D G+GM +K F + +GTGLG+ + K++V+ Sbjct: 670 SPSSSEGFQNVTFTIKDNGIGMKPEYKDKIFDAFSREEKGATKTIQGTGLGMAITKSLVE 729 Query: 787 ANMGKFYIFSTPAKGT 802 G + S KG+ Sbjct: 730 LMGGTIRVDSEEGKGS 745 >gi|291537791|emb|CBL10902.1| Signal transduction histidine kinase [Roseburia intestinalis XB6B4] Length = 437 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 132/244 (54%), Gaps = 14/244 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 KQ + L+HA+ + +F A VSHE++TPLTAI G++E+I + G G Sbjct: 208 KQHMDILNHAQM--------RQEFTANVSHELKTPLTAISGYAELIAS---GMTGGEDTA 256 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +AN I +S + ++ND++ +S+++ + L FE V L + + I +Q+ A++ + Sbjct: 257 HFANEIHKSAERLQSLINDIIKLSELDDSDLKLEFETVDLHDLGEQCIHSMQMQADKNEV 316 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + A+ +P + + ++++ N+ SNA+ + GG + I TT N +L V+DT Sbjct: 317 TLHLEGAS-VP-MNGNKTLLEELLFNLCSNAVRYNKKGGSVTIVTT-IENTRPVLIVKDT 373 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + E+ + F ++ S+ GTGLGL + K +V + + + S GT I Sbjct: 374 GIGIPKEQQERVFERFYRVDKSRSKSTGGTGLGLAIVKHIVAQHDAQMTLTSEVGVGTEI 433 Query: 805 EIIF 808 +I+F Sbjct: 434 KIVF 437 >gi|239625178|ref|ZP_04668209.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519408|gb|EEQ59274.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 1110 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 85/278 (30%), Positives = 136/278 (48%), Gaps = 11/278 (3%) Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 III SS + E K+ K L A + + KS+FL+R+SH+IRTP+ A Sbjct: 686 IIIAIRNISSEKQKELEHREEEKKAKQALEEAYAAVNRANQAKSEFLSRMSHDIRTPMNA 745 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 I+G + V ++ + + + I SG+ +L+++N +LD+SKIESG + L P Sbjct: 746 ILGMAAVAEHNLD---KGDKVKDCLSKIHTSGDHLLELINAVLDMSKIESGSICLAENPF 802 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPS 721 SL + E ++Q K + + D+ VK+I LN+LSNA+ +TP Sbjct: 803 SLSCMMDEVAQIIQTDIGRKGQHLSVHMQGLGHDAVYGDMVRVKEILLNLLSNAVKYTPE 862 Query: 722 GGQIIISTTHTSNEEVILR-----VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 G I +S + + + V D G+GM+ EK PF + + + + +GTGL Sbjct: 863 NGTIQVSLEEKLSSQSGVGCFEFIVEDDGIGMSPEFQEKMFTPFERAEDERVSQIQGTGL 922 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGT--LIEIIFPLYD 812 GLP+ + +V G + S KGT ++ I L D Sbjct: 923 GLPITRNLVQMMNGTIGVESHLNKGTRFVVTIYLKLVD 960 >gi|78357969|ref|YP_389418.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220374|gb|ABB39723.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 606 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 128/250 (51%), Gaps = 10/250 (4%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D++ + + +L AK+ AE KS+FLA +SHEIRTP+ ++G ++ Sbjct: 204 VRDVTATRNLERELRVAKEAAEAADRAKSEFLASMSHEIRTPMNGVLGMLDLAMTTSL-- 261 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + EY + S +L ++ND+LD SKIE+G + L + L + +S ++ Sbjct: 262 --DEEQREYLEAVQNSAEALLSLINDILDFSKIEAGMVELDQQVFRLSKRLSSLHTMFVH 319 Query: 678 YANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTT--HTSN 734 A E+ + + + ++P L+ D ++QI +N+L NA FT GQ+++S Sbjct: 320 RAAERNLEFAINISPDVPDGLSGDPLRLRQIVVNLLDNAFKFTDQ-GQVVLSVEVLERGA 378 Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 E V+L+ V+DTG G+ E+ F Q S R +G+GLGL + K + G Sbjct: 379 ENVLLQFSVQDTGPGILERHQERIFDSFAQADASFTRRHQGSGLGLAICKRLTGLMGGDI 438 Query: 793 YIFSTPAKGT 802 + STP +G+ Sbjct: 439 KVRSTPGEGS 448 >gi|327312949|ref|YP_004328386.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain-containing protein [Prevotella denticola F0289] gi|326946295|gb|AEA22180.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Prevotella denticola F0289] Length = 896 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 122/236 (51%), Gaps = 9/236 (3%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 + I E+ ++ K F +SHE+RTPLT I E I + P +P+ + R+ Sbjct: 381 RHIEEEATTAKLQFFTNISHELRTPLTLIADPVEYIIHD---PNLSPQQRNMLQIVQRNV 437 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 ++ +V+++LD KI++GKM LH +L E + + + L A +K I ++ S + + Sbjct: 438 AVLSRLVSEILDFRKIQNGKMRLHLSDFNLSECMRQWLDLFATSARKKHITLQLSVPSAL 497 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 P + AD +++I N+LSNA+ +TP GG I + + ++V + V D G G+ +L Sbjct: 498 P-MRADRDKLERICYNLLSNAMKYTPEGGCIGFAAS-VEADKVKIMVSDNGCGIAQNDLP 555 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F Q N+ G GTG+GL L KA D + G+ + S +G + PL Sbjct: 556 YVFDRFYQAGNA----GHGTGIGLALVKAFADLHHGEVTVESKEGEGCTFTVWMPL 607 >gi|269960017|ref|ZP_06174394.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835316|gb|EEZ89398.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 1200 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 80/261 (30%), Positives = 127/261 (48%), Gaps = 11/261 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K+++ L + A + + FLA +SHE+RTP+ A++G E+++ L Sbjct: 643 DITELKKKECALKASNLKAMQAIEAREHFLAVISHELRTPIAAMLGLMELLEQD----LD 698 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P E S + VND+LD SK+++ ++ L ++ E + ++ + Sbjct: 699 RPESKELLKSAMLSAERLQLHVNDILDFSKVDANQLQLDVHSGNVYEELGSSLRSFEKAV 758 Query: 680 NEKRILIRTSFANNIPRILADLR--SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 +K + ++ P L +L V QI N+LSNA+ FT G I H E+ Sbjct: 759 EQKALAFEVNW-QPTPYALVNLDWLRVNQIINNLLSNAVKFTDKGK--ISVNIHVCANEL 815 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V DTG GM+ +L+ +PF Q S R GTGLG+ + K +VD G + S Sbjct: 816 VFSVHDTGCGMSKAQLDALFQPFVQGDKSISRRFGGTGLGMSIVKKLVDIMTGTIEVSSK 875 Query: 798 PAKGTLIEIIFPLYDTSHPHD 818 KGT I + P+ TS P D Sbjct: 876 QGKGTEITVRLPM--TSQPLD 894 >gi|269963086|ref|ZP_06177422.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832218|gb|EEZ86341.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 481 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 80/246 (32%), Positives = 132/246 (53%), Gaps = 11/246 (4%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++L+ A++ AE+ + KS+FLA +SHEIRTPL +++G ++++ E N Sbjct: 104 SQLAKAREEAERANQSKSEFLAMMSHEIRTPLNSVLGMLDILRQSTL----TEDQSEVLN 159 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 ++RS +L+L I++D+LD+SKIESG +L+ + L +AV+ IS + A K + Sbjct: 160 QMERSADLLLAIISDILDLSKIESGSFHLNEQWTDLSDAVTLIISQQKQVATAKN--LSF 217 Query: 689 SFANNIPR---ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 F N+ + D + QI N++ NA FT GG I IS + E+++ V DTG Sbjct: 218 EFDCNLDKNKQYWIDSTRLSQILFNLIGNASKFTDFGG-IDISVIE-KDSELVISVADTG 275 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ ++ F Q +S R GTGLGL + K +V+ G + S G+ + Sbjct: 276 IGIPKAKVGHLFTAFHQGDSSITRRFGGTGLGLAITKHLVEMMRGTISVKSEENVGSHFK 335 Query: 806 IIFPLY 811 I P+ Sbjct: 336 IRIPVL 341 >gi|237718051|ref|ZP_04548532.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229452692|gb|EEO58483.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 538 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 136/253 (53%), Gaps = 15/253 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ KQ + +L AK+ AE+ KS FLA +SHEIRTPL AI+GFS ++ L Sbjct: 293 DITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDEAEL- 351 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R++ Y + + + L+L++++D+LDISKIE+G ++L V + + E I+ ++ Sbjct: 352 --RHV-YMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIA---TFS 405 Query: 680 NEKR-ILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 ++KR + F N P+I+ AD + Q+ N L+NA+ FT + G I +S + Sbjct: 406 HKKRDSAVELRFDENSPQIVIDADKNRIVQVLSNFLTNALKFT-TKGSITLSYLLEDESQ 464 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V V DTG G+ + + + F ++ + Q G GLGL + +++V GK + S Sbjct: 465 VRFCVTDTGKGIPDEQKHEIFNRFVKLDSFVQ----GAGLGLSICQSLVKRMGGKIGVES 520 Query: 797 TPAKGTLIEIIFP 809 +G+ P Sbjct: 521 REGEGSCFWFTHP 533 >gi|42522900|ref|NP_968280.1| two-component hybrid sensor and regulator [Bdellovibrio bacteriovorus HD100] gi|39574096|emb|CAE79273.1| two-component hybrid sensor and regulator [Bdellovibrio bacteriovorus HD100] Length = 865 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 126/229 (55%), Gaps = 9/229 (3%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A++ S K+ FLA VSHEIRTPL A++GF+E++K L + E + R+G + Sbjct: 473 AQEASRAKTAFLANVSHEIRTPLGAMLGFAEILKEDE--SLREEQK-EAVETVLRNGQQL 529 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L IV+++LDISK+ES ++ + L + + + I L++ A EK I +R +I Sbjct: 530 LHIVDEILDISKVESERIQIESIVFDLPDLLHDVIHLLRGRAEEKGIELRLRLGPLPKKI 589 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-----SNEEVILRVRDTGVGMTNYE 752 +D ++QI +N++ NAI FT SG + + +H + + V DTG+G+++ + Sbjct: 590 QSDPTRLRQILINVIGNAIKFTDSGFVEMEARSHNGKRRDGRQRIEFLVTDTGIGISSEQ 649 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +PF Q +S R GTGLGL L++ + +G I +T + G Sbjct: 650 RNNLFQPFSQADSSTTRRFGGTGLGLFLSRKLARL-LGGDVILNTSSAG 697 >gi|303247235|ref|ZP_07333509.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302491394|gb|EFL51282.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 1136 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 95/370 (25%), Positives = 168/370 (45%), Gaps = 40/370 (10%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI------------LRKPFTVFLEQ 503 ++L + DG +I ++ I+ +N A ++ GY E++ + P L Sbjct: 490 TLLASMRDGFVVIGKDNRIMESNPAFREMLGYSREELNGLTTLDITPERWQAPEEAVLRT 549 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLTMH 559 +V + I + R+ K+ + + +++ P + Y + Sbjct: 550 ---AVDTQGFSGIFEKEYRR----------KDGSVFPAALRLQRYPSRGDDARRYFAIVR 596 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K + L AK+ AE + KSDFLA++SH+IRTPL A+IG +E+ + PL Sbjct: 597 DVTEDKAIEADLRAAKEAAETANRAKSDFLAKMSHDIRTPLNAVIGMTELTLDT---PLS 653 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + + + +L L ++ND+LDIS+IE+ K+ L + L ++ ++ A Sbjct: 654 HQQRDALETARESAASL-LALINDILDISRIEARKLELASDVFDLRRTLAGITRSMRAQA 712 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 +K + + + A PR + D ++QI LN++ N I FT G +I T + Sbjct: 713 KDKGLRLALAIAPRTPRFVTGDPVRLRQILLNLVGNGIKFTDQGSVSLIVGPDTGQAKPD 772 Query: 737 ----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + V DTG+G+ + LE F Q S + GTGLGL + + + G Sbjct: 773 GATAIAFTVSDTGIGIESERLEGIFDMFAQADASITRQYGGTGLGLAICRELARLMGGCI 832 Query: 793 YIFSTPAKGT 802 S P G+ Sbjct: 833 VAESRPGAGS 842 >gi|126460995|ref|YP_001042109.1| multi-sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC 17029] gi|126102659|gb|ABN75337.1| multi-sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC 17029] Length = 855 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 105/380 (27%), Positives = 176/380 (46%), Gaps = 43/380 (11%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE-----DILRKPFTVFLE-QNTP 506 +L +I ++D I + + ++ NRA +FG+ E D + F L+ + Sbjct: 229 RLEAIFRISADAILVTDWSARVIDCNRAALAIFGHQRERLAGADAMELLFPAELQGRQRM 288 Query: 507 SVMNHYLTEILSLD--LRQTLEKITLGSTK---EEKLLSLRI----IIKKLPFSSCYSLT 557 V++ +D LR LE + ++ E L + R+ II L Sbjct: 289 RVVDALRNSDPRIDGPLRLELEAVHADGSRFPVEVSLAAARVEGEDIIVAL--------- 339 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 M DIS ++ + +L+ A+ A K+DFLA +SHE+RTPL + G E++ P Sbjct: 340 MRDISARRRAERELTEARDRALAGEQTKADFLAVMSHEMRTPLNGLAGSLELLAQT---P 396 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 L +PR E + + S ++LD VN +LDI++ E+ LD + + I+ Sbjct: 397 L-DPRQRELVSVLRASAEILLDHVNSVLDIARSEARPSVAEMVDFDLDRLIEDCIANQSG 455 Query: 678 YA-------NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 +A + + + N P+ L +Q+ LN+L+NA+ FT +G I+ S Sbjct: 456 FAAVVGNRIDHRPLTGPVGILNGEPQRL------RQVLLNLLNNAVKFTRNGRIIVESEV 509 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 ++ E+ RV DTG+G+ LEK F + S + R GTGLGL +A+ + G Sbjct: 510 QGADVEI--RVLDTGIGIAPENLEKVFDDFVTLDASYERRSGGTGLGLGIARRLARIMGG 567 Query: 791 KFYIFSTPAKGTLIEIIFPL 810 + STP +G+ + PL Sbjct: 568 DLTVQSTPGRGSRFTLRLPL 587 >gi|239995384|ref|ZP_04715908.1| two-component hybrid sensor and regulator [Alteromonas macleodii ATCC 27126] Length = 707 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 123/229 (53%), Gaps = 11/229 (4%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A + S KS+FL+ +SHE+RTP+ + G E+ + P + Y++ A +G + Sbjct: 212 ARRASKAKSEFLSSMSHELRTPMNGLFGMIELAID---NPDKSNIYLKKAK---TAGRQL 265 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ND+LDISKIE+GK+ + PV L + + + +SL ++Y K + ++P + Sbjct: 266 LVLINDILDISKIEAGKIKIEQAPVDLLQVLDDVVSLQRVYCQRKGLEFHYLKDPDLPHV 325 Query: 698 L-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGVGMTNYEL 753 + D+ + QI N+LSNAI FT G + + T+T + + V DTG+G+ + +L Sbjct: 326 IKGDITRISQILHNLLSNAIKFTEQGS-VTLKVTYTKRPNGNYLSFDVIDTGIGIESSKL 384 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + K F Q S GTGLGL +AK + +G + S +G+ Sbjct: 385 DNIFKKFEQADQSTTREYGGTGLGLSIAKQLAKLMLGDINVTSFVGQGS 433 >gi|168033671|ref|XP_001769338.1| sensory histidine protein kinase [Physcomitrella patens subsp. patens] gi|162679444|gb|EDQ65892.1| sensory histidine protein kinase [Physcomitrella patens subsp. patens] Length = 369 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 126/244 (51%), Gaps = 8/244 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + N+L ++K AE S KSDFLA +SHEIRTP+ I+G + ++ + + R Sbjct: 5 ELVKANNELLISQKRAEHASHAKSDFLANMSHEIRTPIHGILGLTALLLESQL--TADQR 62 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 E + +L+L I+N +LD+SKIE+G++++ P S+ + VS + ++Q A Sbjct: 63 --ESLMSVKECADLLLHIINSVLDLSKIEAGRLDIETVPFSIRKMVSSTLRMMQARAQAH 120 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI--- 738 + + +P ++ D ++Q LN++ NA+ FT G + + S + + Sbjct: 121 NLQLLWHIEGAVPDNLVGDPGKLQQCLLNLVGNALKFTNEGSVTVRIFSQPSTPKTVDVE 180 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V+DTG+G++ +L+ PF Q S GTGLGL + K V+ G + S Sbjct: 181 FEVQDTGIGISKEKLQDMFNPFTQADASTSRLYGGTGLGLCIVKRFVELLGGTIWAESEE 240 Query: 799 AKGT 802 KG+ Sbjct: 241 NKGS 244 >gi|164428217|ref|XP_956617.2| hypothetical protein NCU01833 [Neurospora crassa OR74A] gi|157072058|gb|EAA27381.2| conserved hypothetical protein [Neurospora crassa OR74A] Length = 1951 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 130/260 (50%), Gaps = 20/260 (7%) Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 S Y + DI++ K + KL A + KS FL+ +SHEIRTPL I G ++ Sbjct: 1238 SSYFGSATDINDLKLLETKLKEAME-------SKSRFLSNMSHEIRTPLIGISGMVSFLQ 1290 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + N +Y N I S N ++ I+ND+LD+SK+++G M L++E + + Sbjct: 1291 DTTL----NEEQRDYTNTIQTSANSLIMIINDILDLSKVDAGMMKLNYEWFHTRSLIEDV 1346 Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG------GQ 724 LV A KR+ + ++P + D ++Q+ LN++ NAI FT G Sbjct: 1347 NELVSTMAIAKRLELNYVVEEDVPAWVKGDKVRIRQVLLNVIGNAIKFTNEGEVFSRCKV 1406 Query: 725 IIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 ++ + H E++L + DTG G T E E KPF QI S + G+GLGL +++ Sbjct: 1407 VVPNHGHLYENEIMLEFSIIDTGRGFTEEEAELIFKPFSQIDGSSTRQHGGSGLGLVISR 1466 Query: 783 AMVDANMGKFYIFSTPAKGT 802 +V+ + GK + KG+ Sbjct: 1467 QLVELHGGKMDGKAVLGKGS 1486 >gi|93005211|ref|YP_579648.1| multi-sensor hybrid histidine kinase [Psychrobacter cryohalolentis K5] gi|92392889|gb|ABE74164.1| multi-sensor hybrid histidine kinase [Psychrobacter cryohalolentis K5] Length = 1169 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 81/261 (31%), Positives = 133/261 (50%), Gaps = 21/261 (8%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + + + +A+ A S KS FLA +SHE+RTPL +I GF ++ R G L NP Sbjct: 288 EMEMQNISIRNARDAAISTSQAKSAFLANISHELRTPLNSIDGFINLLA--RHGEL-NPE 344 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y I +S +L +VND+LD SKIE+GK+ L L + + + + ++ + EK Sbjct: 345 QDLYVQTIRKSSAHLLALVNDVLDFSKIEAGKLVLDRHEFDLYDTIYDVVDMLSPVSAEK 404 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR 740 + + F N++P RI D +KQ+ NI+ NAI FT SG ++ +S + +++ Sbjct: 405 GLRMAVLFYNDVPMRINGDALRLKQVLTNIVGNAIKFTDSGDVVVRVSLDDYQDNYLMIS 464 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD-------------- 786 V+D+G G++ + + + F Q S + GTGLGL ++K + Sbjct: 465 VQDSGKGISLSDQKMLFQSFSQGDPSITRQYGGTGLGLVISKQLTRLMGGDIGFYDNMQE 524 Query: 787 --ANMGKFYIFSTPAKGTLIE 805 +N G + F PA ++E Sbjct: 525 NISNQGATFWFRMPAHVDVVE 545 >gi|295102537|emb|CBL00082.1| diguanylate cyclase (GGDEF) domain [Faecalibacterium prausnitzii L2-6] Length = 1048 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/257 (29%), Positives = 132/257 (51%), Gaps = 13/257 (5%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 ++ + E +L A + A+ S K+ F+ R+SH+IRTP+ I+G +++++ R + Sbjct: 648 AQEQAENQRLQEAFEEADSASRAKTAFMNRMSHDIRTPINGILGMLDILRSNR----DDA 703 Query: 622 RYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 R ++ + ID S + +L +VND+LD+SK+E+G+M + EP ++ + + SLV+ Sbjct: 704 RKVDSCLDKIDLSAHHLLALVNDVLDMSKLEAGQMVMEQEPFDIEVLMHDVSSLVEAQI- 762 Query: 681 EKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 EK L N+ ++ ++QI +N+ SNAI + GG I S + Sbjct: 763 EKGGLTHRRHRENVQHTALVGSSLKLRQIMVNLFSNAIKYNKPGGSIDTYARELSCDGTT 822 Query: 739 L----RVRDTGVGMTNYELEKAM-KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + R+ DTG+GM+ +E + KPF Q + + GTGLG+ + K +V G Sbjct: 823 VWYEFRITDTGIGMSRDFVENQLFKPFTQESADARTQYRGTGLGMSIVKELVSQMGGSIS 882 Query: 794 IFSTPAKGTLIEIIFPL 810 S P +GT P Sbjct: 883 AESQPGEGTAFTFQLPF 899 >gi|260773908|ref|ZP_05882823.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio metschnikovii CIP 69.14] gi|260610869|gb|EEX36073.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio metschnikovii CIP 69.14] Length = 855 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 131/256 (51%), Gaps = 9/256 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ + + + A++ AE+ + ++DFLA++SHE+RTPL I+G S+++K Sbjct: 455 QDITSMVEAEQQSRLAREQAEESARLRADFLAKMSHELRTPLNGILGASQLLKQNSL--- 511 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 E N + SG +L ++ND+LD SKIE GK + + VS + Sbjct: 512 -TQEQQELVNVLCSSGEHLLAVLNDILDFSKIEQGKFLIQNSDFPVVAMVSAIRRIYNPL 570 Query: 679 ANEK--RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII--ISTTHTSN 734 EK ++I + I R+ +D + QI N+LSNA+ FT G I Sbjct: 571 CKEKGLELIIECAIEPEI-RLHSDQIRLNQILFNLLSNAVKFTHQGSICIKLALIQQGGI 629 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +++++ + DTG+G+ +L++ PF Q ++ G+GLGL + ++V+ G+ + Sbjct: 630 DKLMISIEDTGIGIAATDLQRIFAPFVQAESTTTREYGGSGLGLSIVSSLVELLHGEITV 689 Query: 795 FSTPAKGTLIEIIFPL 810 S GT +++FP+ Sbjct: 690 KSEVGYGTRFDLLFPI 705 >gi|269796832|ref|YP_003316287.1| signal transduction histidine kinase [Sanguibacter keddieii DSM 10542] gi|269099017|gb|ACZ23453.1| signal transduction histidine kinase [Sanguibacter keddieii DSM 10542] Length = 572 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 103/389 (26%), Positives = 180/389 (46%), Gaps = 33/389 (8%) Query: 440 TRINK--RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 TR+ + R + + L ++L G+ +++ EG+ L TNR +L + P+ Sbjct: 201 TRLTETLRSSQTTSLLLETVLNTIDTGVLVVDAEGVELVTNRRQQELIDLARPERDGDPW 260 Query: 498 TVFLEQNTPSVMNHYLTEILSLD---LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554 V+ T + L L+ + +R L + LL+ Sbjct: 261 AVYDADRTTLLRPDQLPSTLARNGELVRSALLWFGHERATQRALLA-------------T 307 Query: 555 SLTMHDISE--WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK- 611 S +HD S W +A + K DF++ VSHE+RTPLT+IIG+ E+I+ Sbjct: 308 SQAIHDGSGALWGAVVAYTDITDLVAAMQV--KDDFVSTVSHELRTPLTSIIGYLELIEE 365 Query: 612 ---NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 + F L + + + + R+ + +L +V+DLL ++ SG ++L LDE Sbjct: 366 GYEDSEF-ELTDEVHGQL-EVVARNASRLLALVSDLLTTAQHASGTLSLRMSAGRLDEIT 423 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 +++ V A + + +R P + D + Q+ N+ SNA+ +TPSGG + + Sbjct: 424 QQSLDGVIERALGRGVQLRVDV-RPTPVQMLDQARIAQVLDNLFSNALKYTPSGGTVEVD 482 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 T S+ LRVRDTG+GM+ ++ F + ++++ G GLGL + KA+V+ + Sbjct: 483 VTAHSDHTS-LRVRDTGIGMSESDVRSLFAKFFRAESARRAAIPGVGLGLVICKAIVEGH 541 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 G + ST G+ E+ PL + PH Sbjct: 542 GGSIVVDSTLGSGSTFEVRLPL---AAPH 567 >gi|254492527|ref|ZP_05105699.1| hypothetical protein MDMS009_2869 [Methylophaga thiooxidans DMS010] gi|224462419|gb|EEF78696.1| hypothetical protein MDMS009_2869 [Methylophaga thiooxydans DMS010] Length = 929 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 130/251 (51%), Gaps = 10/251 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI++ K + +L AK+ AE+ + KS FLA +SHE+RTPL +IG ++ Sbjct: 265 TFEDITQAKIAEQELIVAKEQAEQANIAKSQFLANMSHELRTPLNGVIGTLNLLAATSL- 323 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 N R N S + ++ND+LD+SKIESGK+ L + LDE ++E + Sbjct: 324 ---NARQSNLVNISKHSAESLFGLLNDVLDLSKIESGKLELEYHNEDLDELLAEVARGMA 380 Query: 677 LYANEK--RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTS 733 A EK +L F ++ + LR ++QI N++ NA+ FT G + ++ + Sbjct: 381 GRAEEKGLELLCPAHFMSSCVAKVDRLR-LRQILNNLIGNALKFTEKGSITVDMTVIKKT 439 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 E LR + DTGVG++ ++ + F Q+ S G+GLGL + + +V+ G+ Sbjct: 440 MPEATLRFSISDTGVGISEHDQALLFERFKQLDGSSTRPQAGSGLGLAICRQLVELMGGR 499 Query: 792 FYIFSTPAKGT 802 + ST +G+ Sbjct: 500 IGVSSTLGQGS 510 >gi|298675082|ref|YP_003726832.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288070|gb|ADI74036.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 677 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 128/239 (53%), Gaps = 3/239 (1%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A + + S K+ F++ VSHE+RTP+T I G+S ++ N++ G L N + + + I Sbjct: 439 LQKANRELKSLSEMKNRFISNVSHELRTPITNIKGYSNLLNNKKLGEL-NDKQSKAVSVI 497 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 +S + +++ L+ I+ +ES H + +SL ++ +S +Y +K + + T+ Sbjct: 498 SQSCERLRWLIDTLIHINILESDNGIQHTQKISLSSLLNNVVSENSVYFFDKGLNLTTNI 557 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 +N+P + A+ ++Q+ ++IL NA FTPSGG++ + N +I V D G+G+ Sbjct: 558 DSNLPLVDANPEYLEQVFVHILDNACKFTPSGGKVDVHAFDDGNLHII--VSDNGIGIDE 615 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F Q +S + R GTG G+ K +++ + G ++ S +GT + II P Sbjct: 616 ESANNIFDLFYQKDDSSKRRYSGTGAGMYFCKKIIEKHHGNIWVESKIKEGTDVHIILP 674 >gi|242786807|ref|XP_002480878.1| two-component osmosensing histidine kinase (Bos1), putative [Talaromyces stipitatus ATCC 10500] gi|218721025|gb|EED20444.1| two-component osmosensing histidine kinase (Bos1), putative [Talaromyces stipitatus ATCC 10500] Length = 1309 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 77/251 (30%), Positives = 134/251 (53%), Gaps = 14/251 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPLG 619 +S + + + A++ AE+ + KS+FLA +SHEIRTP+ IIG +++ + P Sbjct: 710 VSNLRDSIQRNTAAREAAEQANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDDLKPY- 768 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 PR E N + N +L I++D+LDISKIE+ +M + P ++ V A+ + + A Sbjct: 769 -PR--EMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKA 825 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 NEK + + +++P ++ D ++QI LN++ NAI FT G++ ++ + + E+ Sbjct: 826 NEKFLNLAYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFTEH-GEVKLTISKSEREQCA 884 Query: 739 -------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 V DTG+G+ +L+ F Q S R GTGLGL ++K +V+ G Sbjct: 885 RDEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGD 944 Query: 792 FYIFSTPAKGT 802 ++ S G+ Sbjct: 945 VWVTSEYGHGS 955 >gi|119471294|ref|ZP_01613797.1| putative sensory box histidine kinase/response regulator [Alteromonadales bacterium TW-7] gi|119445760|gb|EAW27043.1| putative sensory box histidine kinase/response regulator [Alteromonadales bacterium TW-7] Length = 640 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 126/242 (52%), Gaps = 13/242 (5%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A++ S K+ FLA +SHEIRTP+ +IG +++ R L ++ + I S + Sbjct: 271 AQRASETKTTFLATMSHEIRTPMNGVIGTIDLL---RQTDLDGAQH-RLSTIIRESAFSL 326 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696 L I++D+LD SKIE+GK+N+ P S+ + + E ++ A ++ + + S A +IP Sbjct: 327 LSILDDILDFSKIEAGKLNIDPIPFSVSDTLEEVTRVLSSVAKKRELDLELSIAPDIPVN 386 Query: 697 ILADLRSVKQIALNILSNAIHFTPSG----GQIIIS--TTHTSNEEVILR--VRDTGVGM 748 ++ D V+Q+ N+ SNAI FT + G + IS H + + LR V D G GM Sbjct: 387 LVGDSVRVRQVLYNLCSNAIKFTSTDEKTQGHVRISVEVAHNTADHFTLRFCVTDNGKGM 446 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 T +L PF Q +S GTGLGL + K++ + +G ++ S G+ + Sbjct: 447 TQTQLRDIFSPFVQAESSITREFGGTGLGLSICKSLTELMLGTIHVNSHAGIGSEFTVEL 506 Query: 809 PL 810 P Sbjct: 507 PF 508 >gi|238895766|ref|YP_002920502.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Klebsiella pneumoniae NTUH-K2044] gi|238548084|dbj|BAH64435.1| hybrid sensory histidine kinase in two-component regulatory system with RcsB [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 946 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 78/253 (30%), Positives = 130/253 (51%), Gaps = 7/253 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 443 DVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKAL-PKG 501 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 502 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLPLV 558 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P ++ D ++Q+ N+LSNAI FT +G I+ + + + Sbjct: 559 VRKQLGLYCFIEPDVPEQMSGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVQCAGDYLQ 616 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + VRDTG G+ E+ + PF Q+ Q +GTGLGL + + ++ G + + P Sbjct: 617 ISVRDTGEGIPAKEVLRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIAVETEP 676 Query: 799 AKGTLIEIIFPLY 811 G+ I PLY Sbjct: 677 GMGSRFTIRIPLY 689 >gi|281207530|gb|EFA81713.1| histidine kinase [Polysphondylium pallidum PN500] Length = 1347 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 78/251 (31%), Positives = 129/251 (51%), Gaps = 13/251 (5%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A + AE + K FL +SHE++TP+ I+ E+++ + E+ + I S Sbjct: 597 ALRKAEAANEAKVVFLTTISHELKTPINGIMASCEILERSNL----DAGQREFLDAIRMS 652 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 N + +V D+LD SK+E+GKM L + SL + + + +S+V A K + + +N Sbjct: 653 SNYLYSLVLDILDYSKMEAGKMELVLDDFSLLKMLEDTLSMVSKNAQPKGLDLVGFVDSN 712 Query: 694 IPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST------THTSNEEVILRVRDTGV 746 +P ++ D V+QI LN++SNAI FT GQI I T T +++ V D+G+ Sbjct: 713 VPVLVHGDATRVRQILLNLISNAIKFT-DEGQIKIRVKLDREITETKEYQLLFEVEDSGI 771 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ N + PF QI +S + +GTGLGL ++K + + G+ ++ S G+ Sbjct: 772 GIKNEHIVLLFTPFSQIDSSNSRKYQGTGLGLSISKRLANMMDGEVFVNSDFGIGSTFSF 831 Query: 807 IFPL-YDTSHP 816 L Y S P Sbjct: 832 TIRLGYPVSKP 842 >gi|237719085|ref|ZP_04549566.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229451464|gb|EEO57255.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1360 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 123/243 (50%), Gaps = 14/243 (5%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 E+NK+ E+ S K F +SHE+RTPL+ I+ E + Q L + Sbjct: 821 ERNKI-------EEISQEKVRFYMNMSHELRTPLSLILAPLEELLGQS--NLKGTPVQQK 871 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 +Y+ ++G +L IVN LLD K E+G M +H V ++E + +A +L + A ++ I Sbjct: 872 LDYVYKNGRKLLHIVNQLLDFRKAEAGAMPIHVAQVDVEELLQDAFALFKENAQKRAISF 931 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 AD V+ I +N+LSNA FTP GG I +S T + VRD+G+ Sbjct: 932 HIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSISLS-LWTEGDTYGFTVRDSGI 990 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 GM+ +L + F Q+ ++ GTG+GL L K +V+ + G + S PA+ T ++ Sbjct: 991 GMSPEQLTHIFERFYQVDGQRK----GTGIGLSLVKMLVEKHHGTIMVASEPAQYTEFKV 1046 Query: 807 IFP 809 P Sbjct: 1047 TLP 1049 >gi|242786803|ref|XP_002480877.1| two-component osmosensing histidine kinase (Bos1), putative [Talaromyces stipitatus ATCC 10500] gi|218721024|gb|EED20443.1| two-component osmosensing histidine kinase (Bos1), putative [Talaromyces stipitatus ATCC 10500] Length = 1310 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 77/251 (30%), Positives = 134/251 (53%), Gaps = 14/251 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPLG 619 +S + + + A++ AE+ + KS+FLA +SHEIRTP+ IIG +++ + P Sbjct: 710 VSNLRDSIQRNTAAREAAEQANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDDLKPY- 768 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 PR E N + N +L I++D+LDISKIE+ +M + P ++ V A+ + + A Sbjct: 769 -PR--EMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKA 825 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 NEK + + +++P ++ D ++QI LN++ NAI FT G++ ++ + + E+ Sbjct: 826 NEKFLNLAYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFTEH-GEVKLTISKSEREQCA 884 Query: 739 -------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 V DTG+G+ +L+ F Q S R GTGLGL ++K +V+ G Sbjct: 885 RDEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGD 944 Query: 792 FYIFSTPAKGT 802 ++ S G+ Sbjct: 945 VWVTSEYGHGS 955 >gi|332560034|ref|ZP_08414356.1| Multi-sensor hybrid histidine kinase precursor [Rhodobacter sphaeroides WS8N] gi|332277746|gb|EGJ23061.1| Multi-sensor hybrid histidine kinase precursor [Rhodobacter sphaeroides WS8N] Length = 825 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 105/380 (27%), Positives = 176/380 (46%), Gaps = 43/380 (11%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE-----DILRKPFTVFLE-QNTP 506 +L +I ++D I + + ++ NRA +FG+ E D + F L+ + Sbjct: 199 RLEAIFRISADAILVTDWSARVIDCNRAALAIFGHQRERLAGADAMELLFPAELQGRQRM 258 Query: 507 SVMNHYLTEILSLD--LRQTLEKITLGSTK---EEKLLSLRI----IIKKLPFSSCYSLT 557 V++ +D LR LE + ++ E L + R+ II L Sbjct: 259 RVVDALRNSDPRIDGPLRLELEAVHADGSRFPVEVSLAAARVEGEDIIVAL--------- 309 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 M DIS ++ + +L+ A+ A K+DFLA +SHE+RTPL + G E++ P Sbjct: 310 MRDISARRRAERELTEARDRALAGEQTKADFLAVMSHEMRTPLNGLAGSLELLAQT---P 366 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 L +PR E + + S ++LD VN +LDI++ E+ LD + + I+ Sbjct: 367 L-DPRQRELVSVLRASAEILLDHVNSVLDIARSEARPSVAEMVDFDLDRLIEDCIANQSG 425 Query: 678 YA-------NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 +A + + + N P+ L +Q+ LN+L+NA+ FT +G I+ S Sbjct: 426 FAAVVGNRIDHRPLTGPVGILNGEPQRL------RQVLLNLLNNAVKFTRNGRIIVESEV 479 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 ++ E+ RV DTG+G+ LEK F + S + R GTGLGL +A+ + G Sbjct: 480 QGADVEI--RVLDTGIGIAPENLEKVFDDFVTLDASYERRSGGTGLGLGIARRLARIMGG 537 Query: 791 KFYIFSTPAKGTLIEIIFPL 810 + STP +G+ + PL Sbjct: 538 DLTVQSTPGRGSRFTLRLPL 557 >gi|330826615|ref|YP_004389918.1| integral membrane sensor signal transduction histidine kinase [Alicycliphilus denitrificans K601] gi|329311987|gb|AEB86402.1| integral membrane sensor signal transduction histidine kinase [Alicycliphilus denitrificans K601] Length = 585 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 124/243 (51%), Gaps = 5/243 (2%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L+ ++ A+ S KSDFLA +SHE+RTPLT+I GF+E+++ + PL E + Sbjct: 331 RRLARSEAQAQSASRAKSDFLAAMSHELRTPLTSIRGFAELMELRSKDPL----VREQSA 386 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I + + ++ ++LD++K+E+G M H EPV+L V E L ++ A K + + Sbjct: 387 LIRQGAEHLNALLTEILDLAKVEAGSMPTHPEPVALPVLVHEVAELFRVSAVVKSLQLEA 446 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 + ++ D +KQI N+LSNAI FT G + +++ V DTG G Sbjct: 447 RLLPEAEQPLVTDRLRLKQILNNLLSNAIKFTAQGRVELAVEPDADGRQMLFHVTDTGPG 506 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + E + F Q + GTGLGL L++A+ G + S+P +G + Sbjct: 507 IAPELHEVIFEKFSQGNARVSYQHGGTGLGLSLSRALATLLGGTLTVQSSPGEGARFTLA 566 Query: 808 FPL 810 PL Sbjct: 567 LPL 569 >gi|261212467|ref|ZP_05926752.1| sensor protein TorS [Vibrio sp. RC341] gi|260838398|gb|EEX65054.1| sensor protein TorS [Vibrio sp. RC341] Length = 969 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 79/257 (30%), Positives = 127/257 (49%), Gaps = 10/257 (3%) Query: 559 HDISEWKQEKNK--LSHAKK--IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 H +S+ + N+ L+HAK AE+ + KS FLA +SHEIRTP+ ++G + +++ Sbjct: 440 HQLSDINHKLNQEVLNHAKARYQAEQANRAKSAFLATMSHEIRTPMNGVLGTARLLQETS 499 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 Y I+RSG +L I+ND+LD SKIE+G + +H L V E L Sbjct: 500 LTSTQQ----HYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHQSHFDLYRLVRETHEL 555 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +Q A EK I + N+ + D + Q+ N++ N I FT G I T Sbjct: 556 MQSRALEKGITLSYQIDENVSQYWQGDEIRIGQVLNNLVGNGIKFTEQGQVCIRVRFDTQ 615 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + + V D+G+G+ + F Q ++ +G GTGLGL +++ +V+A G+ Sbjct: 616 SGGLCFAVEDSGIGIAEQDQVSLFDAFTQAEAGRRKQG-GTGLGLAISRKLVEAMGGELQ 674 Query: 794 IFSTPAKGTLIEIIFPL 810 + S +G+ PL Sbjct: 675 LSSQLGQGSCFYFTLPL 691 >gi|237716423|ref|ZP_04546904.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262408024|ref|ZP_06084572.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|294643626|ref|ZP_06721428.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294808045|ref|ZP_06766818.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] gi|229444070|gb|EEO49861.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262354832|gb|EEZ03924.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|292641003|gb|EFF59219.1| PAS domain S-box [Bacteroides ovatus SD CC 2a] gi|294444686|gb|EFG13380.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b] Length = 810 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 126/253 (49%), Gaps = 14/253 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +DI+ K+ + KL A+ AE+ KS FLA +SHEIRTPL AI+GFS ++ Sbjct: 565 YDITPLKETEQKLIIARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETD---- 620 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 EY + + L+L +++D+LD+SKIE+G N + V ++E SE I + + Sbjct: 621 SRSERQEYIKIVQENNELLLQLISDILDLSKIEAGTFNFVYTNVDVNETCSEIIKSMGMK 680 Query: 679 ANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 + LI P I D Q+ N ++NA+ FT G I + S+++ Sbjct: 681 VGKGVELI---LEEPFPECYIYTDKNRFTQVISNFINNALKFTQQGS-ITLGYEQVSHQK 736 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + VRDTG+G+ + + + F ++ Q GTGLGL + K++V G+ + S Sbjct: 737 IKFYVRDTGMGIPEEKQKSVFERFVKLNTFVQ----GTGLGLSICKSIVSQMGGEIGVDS 792 Query: 797 TPAKGTLIEIIFP 809 T G+ P Sbjct: 793 TEGIGSCFWFTHP 805 >gi|254522336|ref|ZP_05134391.1| sensor protein RcsC [Stenotrophomonas sp. SKA14] gi|219719927|gb|EED38452.1| sensor protein RcsC [Stenotrophomonas sp. SKA14] Length = 893 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 130/242 (53%), Gaps = 13/242 (5%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE S KS+F+A +SHE+RTPL IIG E++ + R + + +S + + Sbjct: 532 AEAGSHAKSNFVAAMSHELRTPLHGIIGHLELLGRAPLPAEASERVLR----LRQSADAL 587 Query: 638 LDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +D++ D+LD+S+IESG+ LH F PV++ E V+ + V A K + + + Sbjct: 588 MDVITDVLDLSRIESGQWTLHPERFSPVAMLERVALLYAPV---AQAKGLQLDCVVDPGV 644 Query: 695 P-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHT-SNEEVILRVRDTGVGMTNY 751 P ++A + +++++ N+ SNA+ FT SG Q+ +S S + L V D+G+G++ Sbjct: 645 PTAVVALMGTIERVLRNLASNALKFTASGRVQLRVSCLRGESGSHLRLEVTDSGIGLSAD 704 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 E + +PF Q S R G+GLGL L + + + G+ ++ ST G+ + PL Sbjct: 705 ECARLFQPFVQADASILQRFGGSGLGLALCQQLCECMGGRIWVESTQGVGSRFIVEAPLL 764 Query: 812 DT 813 T Sbjct: 765 GT 766 >gi|157692126|ref|YP_001486588.1| sensor histidine kinase [Bacillus pumilus SAFR-032] gi|157680884|gb|ABV62028.1| sensor histidine kinase [Bacillus pumilus SAFR-032] Length = 453 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 104/391 (26%), Positives = 185/391 (47%), Gaps = 40/391 (10%) Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAII----NREGIILSTNRAVSKLFGYPVEDI 492 D++TR E E +L L +D + I N +G I+ N+A +++ GY +++ Sbjct: 82 DLNTR------EKEAHELTERLNRITDNLQEIVFETNEKGEIIFLNQAWTQMTGYDIDEC 135 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 L + + +Q V+ H L+ I + ++ L +E + KL F Sbjct: 136 LGTMYNQYFDQE-ERVVQHLLSVIKE---HKDAGRVELQLLHKEGKKVWGDVHYKLYFDE 191 Query: 553 CYSLT-----MHDISEWKQEKNKLSHAKKIAEKESSH---KSDFLARVSHEIRTPLTAII 604 + T + DI++ KQ K +L + + + ++ A ++HE+R PLT++ Sbjct: 192 HHQFTGGIGTVADITKQKQAKLELERSNQQLQMQAQKLAVAGQIAAGIAHEVRNPLTSVN 251 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 GF +++K Q P +Y + I + ++++LL ++K +S +HF+ V L Sbjct: 252 GFLQLMKTQY------PERTDYFDIIFSEIKRIDFVLSELLVLAKPQS----VHFQEVQL 301 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 E + + I+L++ A I ++ F + ILAD +KQ+ +N++ NAI P GG Sbjct: 302 HELLEQVITLLKTNAVLSNIDLKQPFKRQDAGAILADANQMKQLFINLIKNAIEAMPEGG 361 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 I IST NE I ++D G GM+ +++K PF + EGTGLGL + Sbjct: 362 SIYISTEKVLNEWKI-TIQDEGKGMSEEDIQKIYDPFF------STKKEGTGLGLTICAT 414 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 ++ + G+ + S KGT I P+ S Sbjct: 415 ILKDHHGRMDVSSELGKGTAFHIYLPVCQKS 445 >gi|167851254|ref|ZP_02476762.1| sensor kinase/response regulator fusion protein [Burkholderia pseudomallei B7210] Length = 757 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 100/380 (26%), Positives = 172/380 (45%), Gaps = 23/380 (6%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +R+ L ++EA+ D I + I S N A ++FGY ++ + V + Sbjct: 231 ERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGY--DEHAARGCDVAMLI 288 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSC--YSLT 557 + NH L E + D+R+ +E + + +++ +R + P +C SLT Sbjct: 289 APRWLRNHPLPESVP-DMREPIENVDVLCVRQDGG-RMRATMSASPVFDERDACIALSLT 346 Query: 558 MHDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + D E ++ + A++ A+ + K + LA VSHE+RTPL I G+ EV+ Sbjct: 347 LRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVL 406 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +N P+ + + IDRS + +V D+LD S + +GK+ L PV L V++ Sbjct: 407 RN----PVDGALQQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVND 462 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + A I + A + D ++Q+ N+LSNA FTP GG++ +S Sbjct: 463 VTGALGAAAQADGIALSVECALGTCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLE 522 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + L V DTG G++ L + F + + G GLGL + + + + + G Sbjct: 523 R-HDAQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGG 581 Query: 791 KFYIFSTPA-KGTLIEIIFP 809 K S +GT I P Sbjct: 582 KVEAASAGKNRGTTFAITLP 601 >gi|113476695|ref|YP_722756.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] gi|110167743|gb|ABG52283.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] Length = 1172 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 118/223 (52%), Gaps = 8/223 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGF-SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 K++F +SHE RTPLT +IG E + Q+ PL E + R+ +L +VN Sbjct: 536 KTEFFQNISHEFRTPLTLMIGLLEEAVNYQQDLPL------ESSAIALRNSRRLLRLVNQ 589 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 LLD+ ++++G+M F P SL + + Y +K + + T F++ + D+ Sbjct: 590 LLDLQRLDAGRMQPSFRPCSLVDLCRNIVESFTPYCQKKELSLVTDFSDTCLLVYLDVEK 649 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 ++ N+LSNA+ FTP+GG I IS +S E +L+V DTG+G+ ++ + F Q Sbjct: 650 FDKVIYNLLSNAMKFTPAGGSIRIS-IESSQEYCLLKVEDTGIGIRQEQIPFLFQRFRQA 708 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 S EG+GLGL L K +V+ + + + S +GT ++ Sbjct: 709 EGSANRSYEGSGLGLALVKELVELHGAQISVESVYGQGTTFKV 751 >gi|332524176|ref|ZP_08400403.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332107512|gb|EGJ08736.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 650 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 120/228 (52%), Gaps = 16/228 (7%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTP+ AIIG + ++ R + +D + +L +V+D+ Sbjct: 275 KSAFLANMSHEIRTPMNAIIGLTHLLARDATDDQQRSRLAK----VDGAARHLLQVVSDI 330 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+SKIE+GK++L E LDE + ++S+V+ A EK + + R++ D + Sbjct: 331 LDLSKIEAGKLSLEREEFRLDEVLERSLSMVRTKAAEKGLELDVDTTPLPERLIGDPTRL 390 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---RVRDTGVGMTNYELEKAMKPFG 761 Q+ +N+L+NA+ FT GG + +E +L V+D+G G+ +L + + F Sbjct: 391 AQVLINLLANAVRFTDRGGVRLHGRELWRDEHRLLARFEVQDSGPGIAPDQLGRLFEAFD 450 Query: 762 QIPNSQQIRGEGTGLGLPLAK---------AMVDANMGKFYIFSTPAK 800 Q NS R GTGLGL L + A VD+ +G+ F A+ Sbjct: 451 QGDNSATRRHGGTGLGLALTRRFATLMGGEAGVDSRLGEGSTFWVSAE 498 >gi|302846523|ref|XP_002954798.1| volvoxopsin-5, sensory rhodopsin with histidine kinase domain [Volvox carteri f. nagariensis] gi|300259981|gb|EFJ44204.1| volvoxopsin-5, sensory rhodopsin with histidine kinase domain [Volvox carteri f. nagariensis] Length = 1238 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 123/236 (52%), Gaps = 5/236 (2%) Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 K F++ +SHE+RTPL IIG S+ + G + N + ++ I SG +L+++ND Sbjct: 331 QKERFMSSMSHELRTPLNGIIGLSDALLVGSCGEI-NDQALKTITTIKTSGARLLNLIND 389 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 +LD + + GK+ + E V+L V + I L Q A L+ N+P +L D Sbjct: 390 ILDAASMRKGKLTIKHEKVNLKRVVDDVIDLCQPLAKRGVKLV-NDLRENVPFVLGDTGR 448 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 + Q+ N++ N+ FT +G I ++EV + V DTG+G+ + ++ F Q+ Sbjct: 449 IIQVFHNLIGNSCKFTHNG--FISIAASVKDDEVEVAVSDTGIGIPEDKFDQIFLAFEQV 506 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS-HPHD 818 S + GTGLGL L K +V+A+ G+ + S +GT ++ ++ HP++ Sbjct: 507 DMSVTRKYGGTGLGLNLVKQLVEAHGGRISVKSKEGQGTTFFFTLKIHSSAEHPNE 562 >gi|237721170|ref|ZP_04551651.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|229450005|gb|EEO55796.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] Length = 644 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 126/232 (54%), Gaps = 12/232 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K EK+ L AK AE+ + KS FLA +SHEIRTPL +I+GFS+V+ G Sbjct: 400 KSEKD-LRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLA---VGGSTEEEQQ 455 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL--YANEK 682 Y I + +L+L ++ND+LD+S++E+ ++ L +E + + S+ ++ V ++E Sbjct: 456 SYYQIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQSSEN 515 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + L TSF + R++ D++ ++Q+ +N+LSNA FT G + + + + + V Sbjct: 516 QFLFTTSFESF--RMVTDVQRMQQVMINLLSNANKFTKCGKITLDFSVNGETQMAVFSVT 573 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 DTG G+ + + F ++ Q GTGLGL + K +V G +I Sbjct: 574 DTGCGIPKEKQGLVFERFEKLNEYAQ----GTGLGLSICKLIVHKWKGSIWI 621 >gi|163803355|ref|ZP_02197232.1| sensory box sensor histidine kinase/response regulator [Vibrio sp. AND4] gi|159172868|gb|EDP57708.1| sensory box sensor histidine kinase/response regulator [Vibrio sp. AND4] Length = 1129 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 91/317 (28%), Positives = 149/317 (47%), Gaps = 18/317 (5%) Query: 508 VMNHYLTEILS---LDLRQTLEKITLGSTKEEKLLSLR---IIIKKLPFSSCYSLTMHDI 561 + +HYL+ ++ L L E+++ G E + R I + F I Sbjct: 370 IASHYLSNFITSPLLKLTWAAERVSAGDLDESTFNTKRKDEIGRLAISFERMQRSIREKI 429 Query: 562 SEWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 KQ+ L K+ +K++ K +FLA SHE+RTPL +IG +E + + Sbjct: 430 QTIKQQNEALESNIKLIQKQNQELQLADKLKDEFLATTSHELRTPLHGMIGIAETLVSGA 489 Query: 615 FGPLGNPRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G G P +Y + I +SG + ++V+DLLD K+ G M++ VSL A + Sbjct: 490 NG--GIPASQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIEKSAVSLASATRLVLE 547 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 L K I I ++ + AD + ++Q+ N++ NAI T S G+I+IS + Sbjct: 548 LSSHLLGNKTIRIINQVPADLKAVSADPQRLEQVLYNLIGNAIKHT-SEGKIVIS-ANII 605 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +E+V ++V DTG G+ LE +P Q +G GLGL +++ +++ G Y Sbjct: 606 DEQVRVQVVDTGQGIPAEYLEHIFEPLIQAGQDASRYRQGAGLGLSISRQLIELMGGTLY 665 Query: 794 IFSTPAKGTLIEIIFPL 810 + S P GT PL Sbjct: 666 VSSQPMVGTTFSFTLPL 682 >gi|152971177|ref|YP_001336286.1| hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|262043281|ref|ZP_06016412.1| sensor kinase RcsC [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330000607|ref|ZP_08303750.1| sensor kinase protein RcsC [Klebsiella sp. MS 92-3] gi|150956026|gb|ABR78056.1| hybrid sensory histidine kinase in two-component regulatory system with RcsB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|259039380|gb|EEW40520.1| sensor kinase RcsC [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328537949|gb|EGF64128.1| sensor kinase protein RcsC [Klebsiella sp. MS 92-3] Length = 946 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 78/253 (30%), Positives = 130/253 (51%), Gaps = 7/253 (2%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S + + L + AE+ S KS FLA VSHE+RTPL IIG ++++ + P G Sbjct: 443 DVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKAL-PKG 501 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + N S +L+L I++D+LD SKIES ++ + S E ++ + Sbjct: 502 VDRLVTAMN---NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLPLV 558 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K++ + ++P ++ D ++Q+ N+LSNAI FT +G I+ + + + Sbjct: 559 VRKQLGLYCFIEPDVPEQMSGDPMRLQQVISNLLSNAIKFTDTG--CIVLHVQCAGDYLQ 616 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + VRDTG G+ E+ + PF Q+ Q +GTGLGL + + ++ G + + P Sbjct: 617 ISVRDTGEGIPAKEVLRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIAVETEP 676 Query: 799 AKGTLIEIIFPLY 811 G+ I PLY Sbjct: 677 GMGSRFTIRIPLY 689 >gi|15601465|ref|NP_233096.1| sensor protein TorS [Vibrio cholerae O1 biovar eltor str. N16961] gi|254849869|ref|ZP_05239219.1| sensor protein TorS [Vibrio cholerae MO10] gi|9658128|gb|AAF96608.1| sensor protein TorS [Vibrio cholerae O1 biovar El Tor str. N16961] gi|254845574|gb|EET23988.1| sensor protein TorS [Vibrio cholerae MO10] Length = 1020 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 80/255 (31%), Positives = 126/255 (49%), Gaps = 10/255 (3%) Query: 561 ISEWKQEKNK--LSHAK--KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 +SE + N+ L+HAK + AE+ S KS FLA +SHEIRTP+ ++G + ++++ Sbjct: 478 LSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLT 537 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 Y I+RSG +L I+ND+LD SKIE+G + +H L VSE L+Q Sbjct: 538 STQQ----HYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVSETHELMQ 593 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A EK I + ++ + D + Q+ N++ N I FT G I + Sbjct: 594 SRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKFTDQGEVRIRIRLAPDGQ 653 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V D+G+G+ E F Q ++ G GTGLGL +++ +V A G+ + Sbjct: 654 GIRFAVEDSGIGIAEEEQATLFDAFTQADAGRRKLG-GTGLGLAISRKLVQAMGGELQLA 712 Query: 796 STPAKGTLIEIIFPL 810 S +G+ PL Sbjct: 713 SQLGQGSCFWFTLPL 727 >gi|28881238|emb|CAD70476.1| related to two-component histidine kinase chk-1 [Neurospora crassa] Length = 2177 Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 130/260 (50%), Gaps = 20/260 (7%) Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 S Y + DI++ K + KL A + KS FL+ +SHEIRTPL I G ++ Sbjct: 1464 SSYFGSATDINDLKLLETKLKEAME-------SKSRFLSNMSHEIRTPLIGISGMVSFLQ 1516 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + N +Y N I S N ++ I+ND+LD+SK+++G M L++E + + Sbjct: 1517 DTTL----NEEQRDYTNTIQTSANSLIMIINDILDLSKVDAGMMKLNYEWFHTRSLIEDV 1572 Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG------GQ 724 LV A KR+ + ++P + D ++Q+ LN++ NAI FT G Sbjct: 1573 NELVSTMAIAKRLELNYVVEEDVPAWVKGDKVRIRQVLLNVIGNAIKFTNEGEVFSRCKV 1632 Query: 725 IIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 ++ + H E++L + DTG G T E E KPF QI S + G+GLGL +++ Sbjct: 1633 VVPNHGHLYENEIMLEFSIIDTGRGFTEEEAELIFKPFSQIDGSSTRQHGGSGLGLVISR 1692 Query: 783 AMVDANMGKFYIFSTPAKGT 802 +V+ + GK + KG+ Sbjct: 1693 QLVELHGGKMDGKAVLGKGS 1712 >gi|218677263|ref|YP_002396082.1| putative two-component sensor [Vibrio splendidus LGP32] gi|218325531|emb|CAV27738.1| putative two-component sensor [Vibrio splendidus LGP32] Length = 808 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 80/255 (31%), Positives = 132/255 (51%), Gaps = 20/255 (7%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 I +Q+ +L AK AE + +KS+FLA +SHEIRTP+ IIG S ++ + Sbjct: 217 QSIERIRQQYQELEKAKDTAEVANRNKSEFLANMSHEIRTPMNGIIGLSSLLSE-----M 271 Query: 619 GNPR-YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 P+ EY + ++ S +LD++ND+LD SKIE+G++ L EP+ + ++ S ++ Sbjct: 272 DMPKEQKEYVDMLNTSSLTLLDLINDILDYSKIEAGRLELQQEPMKMMGIAADVESTFRV 331 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A +K + + + IP ++ D ++Q+ N++ NAI FT G +++S EE Sbjct: 332 KAEQKGLKFQLAIDPKIPTMVIGDGTQLRQVLNNLVGNAIKFTEH-GHVMLSLRL---EE 387 Query: 737 VI-----LRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 VI LRV+ D+G+G+ + + F Q S GTGLGL + +V Sbjct: 388 VIEPEQKLRVKFEVTDSGIGIAEDKQQSVFDKFQQADGSTTRIYGGTGLGLTICDKIVTL 447 Query: 788 NMGKFYIFSTPAKGT 802 K + S KG+ Sbjct: 448 MGSKLELTSIVGKGS 462 >gi|126737354|ref|ZP_01753089.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp. SK209-2-6] gi|126721939|gb|EBA18642.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp. SK209-2-6] Length = 732 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 120/227 (52%), Gaps = 5/227 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K+ FLA +SHEIRTP+ +IG +E+++ N + S N +L +VND+ Sbjct: 191 KTAFLANMSHEIRTPMNGVIGMAELLEETDL----NEEQRMCTKTVVESSNALLSLVNDV 246 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703 LD SK ++GKM ++ P L E + +L+ A+EK I I ++ P L D Sbjct: 247 LDFSKADAGKMTVNKAPFDLVECLYSTATLLAPNASEKSIEICLDIPDDQPCWCLGDQGR 306 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 ++Q+ +N++ NAI FT +G +I +T ++ + V+DTG+G+ +++ F Q+ Sbjct: 307 LRQVLINLVGNAIKFTETGFVLIKLEVNTESDLMRFLVQDTGIGIPASKVDTIFDVFEQV 366 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + R +G GLGL ++K +++ G + S +G+ PL Sbjct: 367 NSETTRRYDGAGLGLAISKKLIELMGGTLGVTSKLGEGSEFTFALPL 413 >gi|114570744|ref|YP_757424.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10] gi|114341206|gb|ABI66486.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10] Length = 858 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 80/243 (32%), Positives = 127/243 (52%), Gaps = 14/243 (5%) Query: 574 AKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 A++ E E+++ KS FLA +SHEIRTPL I+G ++V++ + + + A I+ Sbjct: 464 AERTRELEAANQAKSTFLANISHEIRTPLNGILGLAQVLRTTSR----SKQRQDQARMIE 519 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 SG + ++ND+LD+SKIE+GKM L + V + +L Q A K + Sbjct: 520 ESGETLTQLLNDVLDMSKIEAGKMELSPQVVDPARLFGDMHTLFQASAEAKSLDFSVEID 579 Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---RVRDTGVG 747 ++P R+ D V+Q N+LSNAI FT G + + H ++ L +V DTG+G Sbjct: 580 PSLPERLEFDPLRVRQCLSNLLSNAIKFTSKGSVQLSARWHRETDQAGLLEIKVCDTGIG 639 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGE--GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 + +L+ PF Q + I GE GTGLGL +A+ + G +TP +G+ Sbjct: 640 IPPEKLDTLFSPFTQ--SDAAIAGEFGGTGLGLSIARDLARLMGGDITAEATPGQGSTFT 697 Query: 806 IIF 808 + F Sbjct: 698 LTF 700 >gi|27804857|gb|AAO22894.1| sensor protein [Myxococcus xanthus] Length = 638 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 90/366 (24%), Positives = 175/366 (47%), Gaps = 36/366 (9%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +LE + I + NR+ ++ N+A+S L G+ E++L + F + ++ +N + Sbjct: 294 LLEKANALILVANRDKQVVVFNQALSALTGFGKEEVLGRDFFWLIPESEHLRLNQLIAAA 353 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-----------DISEWK 565 + + + E L S+ E +S F++ L+ H DI+ K Sbjct: 354 IRGEPVNSFETRLLTSSGAEVRVS---------FATSSKLSQHGEVEGVIAIGQDITVVK 404 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE-VIKNQRFGPLGNPRYI 624 + + ++ HA+K+A A V HEI P+TA+ +++ +++ R P NP Sbjct: 405 ELEKRIIHAEKLASI-----GQLAASVVHEINNPMTAVATYADALLQRSRMTPGANPADQ 459 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E I S + +L DL+ ++ + E V L+ V A+ + + R+ Sbjct: 460 EKLRKILESSHRILRFTRDLVSYARPAQDRP----ERVQLNAIVDMAVGFCEHVVAQARV 515 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 I+ + +P + A ++ Q+ +N+++NA H P GG +I++T ++ +++VRDT Sbjct: 516 TIQREYIE-LPPLSAVRANLVQVFVNLITNACHAMPPGGSVILATGR-DGQDAVVKVRDT 573 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G G+ L++ +PF + + G GTGLGL + + +V+ + G+ + ST +GT Sbjct: 574 GTGIEPKHLQRIFEPF----FTTKPEGRGTGLGLSICQGIVENHGGRLTVESTMGEGTTF 629 Query: 805 EIIFPL 810 + PL Sbjct: 630 IVRLPL 635 >gi|227872712|ref|ZP_03991039.1| conserved hypothetical protein [Oribacterium sinus F0268] gi|227841437|gb|EEJ51740.1| conserved hypothetical protein [Oribacterium sinus F0268] Length = 947 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 98/384 (25%), Positives = 169/384 (44%), Gaps = 45/384 (11%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-----LEQNTPSV 508 +C L S G+ I + N + L ++LR + V+ L + + Sbjct: 281 ICDTLIIFSAGVGIFS----FAELNLPIDILGLITAIEVLRSFYMVWKKDKHLFRELTWM 336 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568 M Y T ++ + + L + G T + K LS+ II + + + EK Sbjct: 337 MGAYCT-LIGFCMIELLSYMISGYTNQGKFLSIGTIIFAFQIMHAQGIEYDKV---QNEK 392 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +KL + K+ +++FLA +SHEIRTP+ +IG +E+I + + + YA Sbjct: 393 SKLEISDKV-------QAEFLANMSHEIRTPINTVIGMNEMILRES----RDDAVLSYAQ 441 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I SG +L +VND+LD S+IESG + L +P L + E S+V+ A K + Sbjct: 442 DIQASGQTLLSLVNDILDFSRIESGGIKLVPKPYELATVIHEINSMVRFRAEWKGLQFEI 501 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------------ 735 + P +L D V+++ LN++ NAI +T G + T +E Sbjct: 502 LVDGDTPAVLYGDAFRVREVFLNLIDNAIKYTEKGKITLSVTARALDEEGNSPVQSKEET 561 Query: 736 --------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 E+ + V+DTGVG+ + + + F ++ + +GTGLGLP+ V+ Sbjct: 562 GLSTAKAIELQIAVKDTGVGVKESDQKLIFQKFQRVQSGWSQNIQGTGLGLPITNYFVEI 621 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLY 811 G + S +G+ P + Sbjct: 622 MNGHIQLDSVFGEGSCFTAYIPQW 645 >gi|255604796|ref|XP_002538284.1| sensory transduction histidine kinase, putative [Ricinus communis] gi|223512911|gb|EEF24099.1| sensory transduction histidine kinase, putative [Ricinus communis] Length = 406 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 134/240 (55%), Gaps = 4/240 (1%) Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K+ AE+ S K+ FLA++SHE+RTPL +I+GF+ +++ L P+ + I+ SG Sbjct: 11 KESAERASLAKTQFLAQMSHELRTPLNSILGFARLLELNLRNTLSAPQ-LRQLRSIETSG 69 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L ++N++LDIS+IESG + L + V L + + +Q A E I + + ++ Sbjct: 70 RDLLHLINEILDISRIESGNIRLAIDDVPLHPLLEKIDHQMQPVATEAGIAMHIAMPTDL 129 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 + AD + ++QI N+LSNA+ + + G + + + V + V+D G G++ ++ Sbjct: 130 I-VRADPQRLQQILTNLLSNAVKYNRADGAVHLH-AFRHGDIVRIEVQDEGEGLSAVQIR 187 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + +PF ++ +++ EGTGLGL + +A+ + G+ + S KG I P+ D + Sbjct: 188 ELFQPFNRL-GAERSHVEGTGLGLVIVRALAEQMHGRLDVRSEVGKGATFIIELPIGDAA 246 >gi|170751185|ref|YP_001757445.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170657707|gb|ACB26762.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 910 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 123/224 (54%), Gaps = 11/224 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL-GNPRYIEYANYIDRSGNLVLDIVND 643 K++FL+ +SHEIRTPL A+IGF+ ++ G L G+ R YA +G + +V+D Sbjct: 407 KTEFLSAMSHEIRTPLNAVIGFAGLLAES--GRLDGDLR--RYAELAATAGANLRTVVDD 462 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLR 702 +LD S +E+G +NL EPV+L V + +V+ A K + + +P R++ D Sbjct: 463 ILDFSSVEAGAINLDPEPVALRPLVDACLGIVEAPARAKGLDLVAQIDAAVPDRLVCDPG 522 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAMK 758 ++QI LN+L+NA+ FTP G++ + H + + V DTG+G+ E+ + Sbjct: 523 RLRQILLNLLNNAVKFTPR-GRVTVDLFHEEAGPRGDTIRFSVTDTGIGIAPDRQERLFQ 581 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 F Q +S + GTGLGL +++ +V+ G + S +G+ Sbjct: 582 RFSQADSSIRRAYGGTGLGLAISRRLVELMGGTMGLVSAEGRGS 625 >gi|108759665|ref|YP_634982.1| sensory box histidine kinase [Myxococcus xanthus DK 1622] gi|108463545|gb|ABF88730.1| sensory box histidine kinase [Myxococcus xanthus DK 1622] Length = 631 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 90/366 (24%), Positives = 175/366 (47%), Gaps = 36/366 (9%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +LE + I + NR+ ++ N+A+S L G+ E++L + F + ++ +N + Sbjct: 287 LLEKANALILVANRDKQVVVFNQALSALTGFGKEEVLGRDFFWLIPESEHLRLNQLIAAA 346 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-----------DISEWK 565 + + + E L S+ E +S F++ L+ H DI+ K Sbjct: 347 IRGEPVNSFETRLLTSSGAEVRVS---------FATSSKLSQHGEVEGVIAIGQDITVVK 397 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE-VIKNQRFGPLGNPRYI 624 + + ++ HA+K+A A V HEI P+TA+ +++ +++ R P NP Sbjct: 398 ELEKRIIHAEKLASI-----GQLAASVVHEINNPMTAVATYADALLQRSRMTPGANPADQ 452 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E I S + +L DL+ ++ + E V L+ V A+ + + R+ Sbjct: 453 EKLRKILESSHRILRFTRDLVSYARPAQDRP----ERVQLNAIVDMAVGFCEHVVAQARV 508 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 I+ + +P + A ++ Q+ +N+++NA H P GG +I++T ++ +++VRDT Sbjct: 509 TIQREYIE-LPPLSAVRANLVQVFVNLITNACHAMPPGGSVILATGR-DGQDAVVKVRDT 566 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G G+ L++ +PF + + G GTGLGL + + +V+ + G+ + ST +GT Sbjct: 567 GTGIEPKHLQRIFEPF----FTTKPEGRGTGLGLSICQGIVENHGGRLTVESTMGEGTTF 622 Query: 805 EIIFPL 810 + PL Sbjct: 623 IVRLPL 628 >gi|114564655|ref|YP_752169.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] gi|114335948|gb|ABI73330.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] Length = 1236 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 78/254 (30%), Positives = 131/254 (51%), Gaps = 14/254 (5%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+ K + L AK+ AE + +KS+FLA +SHEIRTP+ AIIG ++ + Sbjct: 694 THKDITRQKSNEVALLEAKQDAELANMYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLT 753 Query: 617 PLGNPRYIEYANYIDRSG---NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 ++ +Y++++G +L I+ND+LD SKIE+GK+ L LD+ + I Sbjct: 754 -------VQQQDYLNKAGFSAQSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHVID 806 Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH 731 + + A EK + + IL D + Q+ +N+LSNA+ FT +G ++ Sbjct: 807 INAIKAQEKGVELLLYAPVTAGLILYGDPLRLGQVIVNLLSNAVKFTQTGEVELGCEDVG 866 Query: 732 TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 ++ + ++ VRDTG+G++ + F Q S + GTGLGL ++K +V Sbjct: 867 ERDDRITMKFWVRDTGIGISKDQQAMLFDAFSQADGSTTRKYGGTGLGLSISKHLVSMMG 926 Query: 790 GKFYIFSTPAKGTL 803 G + S G++ Sbjct: 927 GTMQVESELGSGSI 940 >gi|113474513|ref|YP_720574.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] gi|110165561|gb|ABG50101.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] Length = 1130 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 123/237 (51%), Gaps = 11/237 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN--YIDRSGNLVLDIVN 642 K +FLA SHE+RTPL IIG +E + + G GN ++ N I SG+ + ++VN Sbjct: 453 KDEFLANTSHELRTPLNGIIGIAESMMD---GATGNISELQNKNLSMIVVSGHRLANLVN 509 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702 D+LD SK+ + L V + E ++ ++ EK + + + ++++P + AD Sbjct: 510 DILDFSKLRHHSIKLKMSSVGMREVTEVVLTFSRIILKEKDVQLINAISSDLPPVEADEN 569 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKP 759 ++QI N++ NAI FT G I IS +N ++ + V DTG+G+ + E Sbjct: 570 RIQQIMHNLVGNAIKFTEV-GVITISAELIDLKNNPKMAITVSDTGIGIPEDKHEAIFAS 628 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 F Q S + R GTGLGLP+ K +V+ + G + S P G+ E F L + P Sbjct: 629 FEQGDGSTERRYGGTGLGLPITKQLVELHGGTISVKSNPGVGS--EFTFTLNISKEP 683 >gi|330505536|ref|YP_004382405.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas mendocina NK-01] gi|328919822|gb|AEB60653.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas mendocina NK-01] Length = 1277 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 96/368 (26%), Positives = 174/368 (47%), Gaps = 38/368 (10%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L ++L+ D I I+ +G I + N A K+FGY ++ V H + Sbjct: 940 LSTLLDNVVDAIVSIDEQGRIETFNHAAEKIFGYLQDE----------------VAGHNI 983 Query: 514 TEI---LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 T++ L+ ++RQ G ++ +R ++ P L M IS + ++ Sbjct: 984 TQLIPDLAGEVRQGCALDEFG-----EMDGVRQNGERFPME----LAMSQISH-QGQRRF 1033 Query: 571 LSHAKKIAEKE--SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN-PRYIEYA 627 ++ + I E++ K++F++ VSHE+RTPLTAI G +I G LG P+ + Sbjct: 1034 ITVIRDITERKRIEQMKNEFVSTVSHELRTPLTAIAGSLGLING---GALGEVPQTMRQM 1090 Query: 628 NYIDRSGNLVLD-IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I S +L L ++NDLLD+ K+ +GKM + + + +A+ Q YA + ++ + Sbjct: 1091 LAIAHSNSLRLSALINDLLDMEKLVAGKMQFDLQARLMQPLLEQALLHNQPYAEQHQVEL 1150 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 R ++ + D + + Q+ N+LSNA F+P GG +++ T E + + V D G Sbjct: 1151 RLQVEDD-ALVNVDTQRLAQVMANLLSNAAKFSPPGGNVVV-CLQTLGEALRVSVSDNGP 1208 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ + F Q + + GTGLGL + K +++ G+ S+P +G Sbjct: 1209 GIPEAFKPRIFSKFSQADSGDTRQQGGTGLGLAICKEIIERMGGQIGFDSSPGQGATFWF 1268 Query: 807 IFPLYDTS 814 P+ ++ Sbjct: 1269 ELPITGSA 1276 >gi|294665048|ref|ZP_06730354.1| Two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605166|gb|EFF48511.1| Two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 641 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 122/241 (50%), Gaps = 10/241 (4%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP--LGNPRYIEYANYID 631 A+ AE + K +FLA +SHE+RTPL AI+G+S ++++ P LG I I+ Sbjct: 250 ARAQAEHANRVKDEFLATLSHELRTPLNAILGWSRLMQSDIADPANLGRGLVI-----IE 304 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF- 690 RS I++DLLD+S I SGK+ L E + V A+ L+Q A ++I + Sbjct: 305 RSARAQTQIIDDLLDMSAILSGKIRLQAEHFDIAGLVRSALELMQPTALTRKIALELDAP 364 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + D ++Q+ N+LSNA+ FTP+GG + ++ +E + L V+DTG+G+ Sbjct: 365 CDGELWFFGDAGRLQQVLTNLLSNALKFTPAGGTVRVAMD-VEDERLRLCVQDTGIGIAA 423 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 L F Q R G GLGL +++ +VD + G S G L I+ P Sbjct: 424 EFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEGHGALFTIVLP 483 Query: 810 L 810 Sbjct: 484 F 484 >gi|256829207|ref|YP_003157935.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578383|gb|ACU89519.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1096 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/260 (29%), Positives = 136/260 (52%), Gaps = 8/260 (3%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 ++ DI++ K+ + L AK AE + KS+FLA +SHEIRTPL I+G + ++Q Sbjct: 688 FACIFTDITDRKRYERDLRQAKDAAEAANVAKSEFLANMSHEIRTPLNGIMGILHLFESQ 747 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 P + +E AN S + +++D+LD+++IESGK+ + P + E + + Sbjct: 748 DL-PGEQKKLLELANT---SAGRLNGLLSDILDLARIESGKLAIQSAPFAPRELRASTLG 803 Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG--GQIIISTT 730 L L A K + + + +P +L D ++Q+ N++ N++ FT +G + Sbjct: 804 LFTLAAQGKNLSLEFILDDTLPSMLEGDESRLRQVLFNLVGNSLKFTRAGFVRVEVGPLP 863 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 ++ ++ V D+G G+++++L+ PF Q +S R +G GLGL + K +V G Sbjct: 864 GGASPRILFCVTDSGPGISDHQLKDIFTPFVQGEDSYVRRHQGAGLGLAIVKRIVGLMDG 923 Query: 791 KFYIFSTPAKGTLIEIIFPL 810 + S+ A GT I P+ Sbjct: 924 CLCVDSS-ANGTTICFSLPM 942 >gi|89519306|gb|ABD75783.1| putative signal transduction histidine kinase [uncultured bacterium] Length = 962 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 82/272 (30%), Positives = 141/272 (51%), Gaps = 21/272 (7%) Query: 566 QEKNK-LSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 Q+ N+ L A+++ E++ S +KS+FL+ +SHE+RTPL +++ S ++ + Sbjct: 254 QDNNRELEQARELVEEKANELELSSKYKSEFLSNMSHELRTPLNSLLILSRLLYENKDEN 313 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 L + + IEY+ + +G +L+++N++LD+SKIE+G+M L+ E ++L S Sbjct: 314 LTD-KQIEYSRTVHAAGTELLELINEVLDLSKIEAGRMVLNIEEMNLKGFTSYVEQHFLH 372 Query: 678 YANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QI-------- 725 A EK + + + A ++P L D + V+QI N+LSNA+ FT SGG QI Sbjct: 373 IAEEKGLYLHIALAEDVPSSLYTDRQRVEQIVKNLLSNAMKFTTSGGITIQIDRPTAGID 432 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + +T V + V DTGVG+ + + F Q + + GTGLGL + + + Sbjct: 433 LSRSTLNPQHAVAISVSDTGVGIPEEKQRVIFEAFQQADGTTSRKYGGTGLGLSITRELA 492 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 G+ + S KG+ + P T H Sbjct: 493 KLLGGEIQLRSEEGKGSTFTLYLPEILTEPQH 524 >gi|87311190|ref|ZP_01093313.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] gi|87286098|gb|EAQ78009.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] Length = 543 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 127/239 (53%), Gaps = 6/239 (2%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A++ A S KS+FLA +SHE+RTPLTA++G +EV+ + + + I + Sbjct: 159 AEQAAHAASQTKSEFLANMSHELRTPLTAVMGLTEVLNTEE----TDQEKRQLLAMIRQG 214 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G+ +L+++ND+LD+SKIE+G++ + E +E + +++ A K I + + +N Sbjct: 215 GDHLLNLINDILDLSKIEAGRIENNKIACQPGEIAAEVVDSLRVSAAAKSIELSWTMDDN 274 Query: 694 IPRILADLR-SVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILRVRDTGVGMTNY 751 +P +A ++QI N+ NA+ FT G + + ++ + V DTG G+ Sbjct: 275 MPTTIAAAPIRLRQILFNLAGNAVKFTDHGSVTVHLQIDPLDSQLLRFSVTDTGEGIPPE 334 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 L+ +PF Q+ + R +G GLGL ++K + + G + S P +G+ + PL Sbjct: 335 GLKLLFEPFSQLDGTAARRRDGAGLGLSISKRLAETMGGTIEVESQPGQGSTFALRLPL 393 >gi|84496374|ref|ZP_00995228.1| Sensory transduction histidine kinase [Janibacter sp. HTCC2649] gi|84383142|gb|EAP99023.1| Sensory transduction histidine kinase [Janibacter sp. HTCC2649] Length = 678 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 138/262 (52%), Gaps = 4/262 (1%) Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSE 608 ++ +T H + E+ + + +A E+ K +F+ VSHE+RTPLT+I G+ E Sbjct: 415 TALQQVTAHTARAFLAEERQAQQVEHVARLEALDRQKDEFVGTVSHELRTPLTSIAGYLE 474 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++ + G L +P ++ I+R+ + ++ D+L +++IE+ ++ F PV L + V Sbjct: 475 MLADGDLGEL-SPAQLKAMAVIERNTFRLRGLIEDVLVLNRIETRGLDPSFVPVDLAQLV 533 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 + + +Q A + + + S + D + + N++ NA+ F+ SGG +++ Sbjct: 534 RDVVQDLQPQARDNEVTLDVSDLPQTCVVEGDALQLGRALTNVVGNAVKFSKSGG-LVVV 592 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + + V +R RD+G+G+ ++E+ F + N+ GTGLGL + KA+++A+ Sbjct: 593 SVVVELDAVRIRCRDSGIGIPAADMEQMFSRFFRASNATSGAIPGTGLGLAIVKAIIEAH 652 Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810 G+ + S +GT + + PL Sbjct: 653 HGELELHSVEGEGTTVSLTLPL 674 >gi|330972152|gb|EGH72218.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 595 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 92/375 (24%), Positives = 164/375 (43%), Gaps = 55/375 (14%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L ++L++ DG+ +I+R+G + N + G+ S + H Sbjct: 259 RLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGW-----------------DESRLGHS 301 Query: 513 LTEILSL-DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-------------- 557 L E L +L + L + G T E L I I YS+T Sbjct: 302 LGEALGRPELDEQLHLVLRGGTLERAPEDLAIEIDGESRLLTYSMTPVSHTKGHILGAVM 361 Query: 558 -MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI-IGFSEVIKNQRF 615 +HD++E + + +S+F+ R SHE+RTP+T + + F + + F Sbjct: 362 VLHDVTEQRAFERV--------------RSEFVLRASHELRTPVTGMHMAFGLLQERLHF 407 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P R + N + ++ ++NDLL+ S+ ++G L P S++ + EA + Sbjct: 408 AP--ESREADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLQEAKARF 465 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A E+ I++ +PR+ AD ++++ N+L NA+ TP G +I E Sbjct: 466 EDQAQEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTPPNG-LIRLQARRHGE 524 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 I+ V D G G+ + + +PF Q+ + G GL L L K +V + G+ ++ Sbjct: 525 RAIISVEDNGEGIAYGQQGRIFEPFVQVGRKKG----GAGLRLALCKEIVQLHGGRMGVY 580 Query: 796 STPAKGTLIEIIFPL 810 S P +GT + PL Sbjct: 581 SRPGQGTQFYMALPL 595 >gi|325262754|ref|ZP_08129490.1| sensor histidine kinase/response regulator [Clostridium sp. D5] gi|324031848|gb|EGB93127.1| sensor histidine kinase/response regulator [Clostridium sp. D5] Length = 899 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 85/279 (30%), Positives = 147/279 (52%), Gaps = 16/279 (5%) Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 +S C +T D E ++++ L A + A+ +S K++FL+ +SH+IRTP+ AI+G + + Sbjct: 354 YSVCIDVT-EDRREQERQRRALEDAYQTAKVANSAKTNFLSSMSHDIRTPMNAIMGMAAI 412 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + P R + N I+ S +L ++N++LD+SKIESGK++L E V+L E + Sbjct: 413 AQANLAEP---ERVRDCLNKINVSSRHLLSLINEVLDMSKIESGKIDLLPEEVNLPELIQ 469 Query: 670 EAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQI--- 725 + + EK++ + S + +++ D ++Q+ +N+LSNAI +TP GG + Sbjct: 470 NVSDMCKPLIAEKQLDFKISVSYVRHEKVITDGDRMQQVLMNLLSNAIKYTPDGGTVSLR 529 Query: 726 ---IISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 I S T + E I V D G+GM + PF + +S+ + +GTGLG+ + Sbjct: 530 IKEIPSITDKKGQFEFI--VTDDGIGMPEDFIPLIFDPFSRAEDSRISKIQGTGLGMAIT 587 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEII--FPLYDTSHPHD 818 + +V G + S KG+ + F L D P D Sbjct: 588 ENIVRMMNGSIEVTSQMEKGSTFTVTLQFELVDEDIPCD 626 >gi|294506830|ref|YP_003570888.1| Two component system histidine kinase, [Salinibacter ruber M8] gi|294343158|emb|CBH23936.1| Two component system histidine kinase, putative [Salinibacter ruber M8] Length = 1052 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 119/227 (52%), Gaps = 8/227 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS LA +SHEIRTPLT+IIGF++ I + G + +AN I +SG +L+ ++ + Sbjct: 829 KSAMLANMSHEIRTPLTSIIGFADAIGEETQDAEGAA--LRFANLIGKSGRRLLNTLDGV 886 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY--ANEKRILIRTSFANNIPRILADLR 702 L++SK+E+G+M L E ++D A + +L A K + +R AD Sbjct: 887 LNLSKLEAGQMQL--ESTAVDVAAQAEVIAKELRPKAEGKGLRLRVDAGEAPVWAEADEG 944 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 V+ + N++SNAI +T + G++ I H E+ +L + DTG+GM ++ PF Q Sbjct: 945 GVQIVLQNLVSNAIKYTDA-GEVRIRVAH-EEEQAVLNIEDTGIGMDPEGVKTLFDPFRQ 1002 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 EGTGLGL + K VD G + + +G+ + FP Sbjct: 1003 ESEGLAREYEGTGLGLTVTKKAVDQMGGSIDVETEKGEGSHFTVRFP 1049 >gi|212543487|ref|XP_002151898.1| two-component osmosensing histidine kinase (Bos1), putative [Penicillium marneffei ATCC 18224] gi|210066805|gb|EEA20898.1| two-component osmosensing histidine kinase (Bos1), putative [Penicillium marneffei ATCC 18224] Length = 1313 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 77/251 (30%), Positives = 134/251 (53%), Gaps = 14/251 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPLG 619 +S + + + A++ AE+ + KS+FLA +SHEIRTP+ IIG +++ + P Sbjct: 720 VSNLRDSIQRNTAAREAAEQANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDDLKPY- 778 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 PR E N + N +L I++D+LDISKIE+ +M + P ++ V A+ + + A Sbjct: 779 -PR--EMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKA 835 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 NEK + + +++P ++ D ++QI LN++ NAI FT G++ ++ + + E+ Sbjct: 836 NEKFLNLAYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFTEH-GEVKLTISKSEREQCA 894 Query: 739 -------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 V DTG+G+ +L+ F Q S R GTGLGL ++K +V+ G Sbjct: 895 RDEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGD 954 Query: 792 FYIFSTPAKGT 802 ++ S G+ Sbjct: 955 VWVTSEYGHGS 965 >gi|160884768|ref|ZP_02065771.1| hypothetical protein BACOVA_02757 [Bacteroides ovatus ATCC 8483] gi|156109803|gb|EDO11548.1| hypothetical protein BACOVA_02757 [Bacteroides ovatus ATCC 8483] Length = 1320 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/272 (26%), Positives = 130/272 (47%), Gaps = 13/272 (4%) Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD-------FLARVSHEIRTPL 600 L ++ L +H ++Q K +L H + + E + F +V+HE RTPL Sbjct: 765 LMYAVIIYLLIHRYVIYRQRKQRLEHELHLKQIEQQKAEELNHELQLFFTQVAHEFRTPL 824 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 + I+ + I+++ G E I R+ +L +VNDL+D+ KIESG L+ Sbjct: 825 SLILNPLDEIQDKIIHIAGVQ---EALKLIRRNAQRLLALVNDLMDLRKIESGTDKLNLS 881 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 ++ E Q A ++ + + N D +++++ N+LSNA FTP Sbjct: 882 NFDFNDFTKEVYYTFQGIAGQRHLKFLLNLPNTPIMATFDREAMEKVLFNLLSNAFKFTP 941 Query: 721 SGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 GG++ +S T E +++ ++DTG+G++ ++EK +PF G+G+G Sbjct: 942 EGGEVHLSVTTEKTVESKSILIEIKDTGIGISPEDVEKIFRPFALSRKDLHGNISGSGVG 1001 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L + + +++ + G I + P GT I I P Sbjct: 1002 LSITRTIIEHHKGTIQIQNNPPHGTCIHIELP 1033 >gi|146309325|ref|YP_001189790.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas mendocina ymp] gi|145577526|gb|ABP87058.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas mendocina ymp] Length = 1291 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 91/364 (25%), Positives = 170/364 (46%), Gaps = 19/364 (5%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L ++L+ D I I+ +G I + N A +FGY ++ + + + S + Y+ Sbjct: 944 LSTLLDNVLDAIVTIDEQGRIETFNHAAEAIFGYRQSEVAGHNVRLLMPEPYRSAHDGYI 1003 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 L +T E +G +E L +R ++ S H + ++ ++ Sbjct: 1004 QRYL-----RTGEAWVIGQARE--LEGMRQNGERFAMELAVSQISH-----QGQRRFIAV 1051 Query: 574 AKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 + IAE++ K++F++ VSHE+RTPLTAI G +I G + P + I Sbjct: 1052 IRDIAERKRIELMKNEFVSTVSHELRTPLTAIAGSLGLINGGALGAV--PDNMRQMLAIA 1109 Query: 632 RSGNLVLD-IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 S + L ++NDLLD+ K+ +GKM+ + +L + +A+ Q YA + ++ +R Sbjct: 1110 HSNSQRLSALINDLLDMDKLVAGKMHFDLQARTLQPLLEQALLHNQPYAEQHQVELRLQV 1169 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 ++ ++ D + + Q+ N+LSNA F+P G + + H E + + V D+G G+ Sbjct: 1170 EDD-AQVRVDAQRLAQVMANLLSNAAKFSPPGTCVDVRLQH-GGEVLRVSVTDSGPGIPE 1227 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F Q + + GTGLGL + K +++ G S+P +G P+ Sbjct: 1228 AFKPRIFSKFSQADSGDTRQQGGTGLGLAICKEIIERMGGHIGFDSSPGQGATFWFELPI 1287 Query: 811 YDTS 814 ++ Sbjct: 1288 TGSA 1291 >gi|53723264|ref|YP_112249.1| sensor kinase/response regulator fusion protein [Burkholderia pseudomallei K96243] gi|52213678|emb|CAH39732.1| putative sensor kinase/response regulator fusion protein [Burkholderia pseudomallei K96243] Length = 771 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 100/380 (26%), Positives = 172/380 (45%), Gaps = 23/380 (6%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +R+ L ++EA+ D I + I S N A ++FGY ++ + V + Sbjct: 245 ERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGY--DEHAARGCDVAMLI 302 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSC--YSLT 557 + NH L E + D+R+ +E + + +++ +R + P +C SLT Sbjct: 303 APRWLRNHPLPESVP-DMREPIENVDVLCVRQDGG-RMRATMSASPVFDERDACIALSLT 360 Query: 558 MHDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + D E ++ + A++ A+ + K + LA VSHE+RTPL I G+ EV+ Sbjct: 361 LRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVL 420 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +N P+ + + IDRS + +V D+LD S + +GK+ L PV L V++ Sbjct: 421 RN----PVDGALQQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVND 476 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + A I + A + D ++Q+ N+LSNA FTP GG++ +S Sbjct: 477 VTGALGAAAQADGIALSVECALGTCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLE 536 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + L V DTG G++ L + F + + G GLGL + + + + + G Sbjct: 537 R-HDAQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGG 595 Query: 791 KFYIFSTPA-KGTLIEIIFP 809 K S +GT I P Sbjct: 596 KVEAASAGKNRGTTFAITLP 615 >gi|99081695|ref|YP_613849.1| GAF sensor hybrid histidine kinase [Ruegeria sp. TM1040] gi|99037975|gb|ABF64587.1| GAF sensor hybrid histidine kinase [Ruegeria sp. TM1040] Length = 579 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 82/267 (30%), Positives = 136/267 (50%), Gaps = 8/267 (2%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 ++ + ++ K + + A++ A++E+ + +LA +SHEIRTPL IIG +++ + Sbjct: 156 AVAVDNVIALKHARELAAEAERTAKREAEARKTYLAHMSHEIRTPLNGIIGSVDLLLREA 215 Query: 615 FGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 +PR + I+RS + ++ND LDI+KI++GK+ L L E V + + Sbjct: 216 SRVNLDPREQNDLLRTINRSARNLQHLLNDALDIAKIDAGKLELAPAAFDLHETVDDVMK 275 Query: 674 LVQLYANEKRILIRTSFAN--NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 L A EK + + SF + D + QI N+LSNAI FT G + + Sbjct: 276 LFSAQACEKGVELNHSFRGIEAQEQRYGDRFRLAQILGNLLSNAIKFTDDGS--VSLQIN 333 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + + L +RD+G G+ L+K P+ Q + Q +G GTGLGL + MV+ G Sbjct: 334 GTPDALHLTLRDSGCGIAPDRLDKLFLPYTQASADVAQTKG-GTGLGLTIVHQMVELMQG 392 Query: 791 KFYIFSTPAKGTLIEIIFPL-YDTSHP 816 + S P +GT+ + PL TS P Sbjct: 393 RIRAESVPGRGTVFHLYLPLPLTTSAP 419 >gi|311070583|ref|YP_003975506.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942] gi|310871100|gb|ADP34575.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942] Length = 611 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 99/372 (26%), Positives = 168/372 (45%), Gaps = 41/372 (11%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E E +L S++ +DG+ NR G I+ N +L E L P T L Sbjct: 259 EGERRKLSSVIAYMTDGVIATNRNGAIILLNSPALELLNVSRETALEMPITSLL-----G 313 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYSLTMHDISE 563 + ++ E DL + E + L +EE+ LR+ I ++ ++D++E Sbjct: 314 IHENFTFE----DLVEQQESMLLEIEREEQTTVLRVNFSVIEREHGKIDGLIAVIYDVTE 369 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN--- 620 EK + +F+A VSHE+RTPLT + + E + G N Sbjct: 370 --------------QEKIDQERREFVANVSHELRTPLTTMRSYLEALAE---GAWENKDI 412 Query: 621 -PRYIEYA-NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 PR++ N +R ++ +VNDLL +SK +S + E + +S I ++ Sbjct: 413 APRFLMVTQNETER----MIRLVNDLLQLSKFDSKDYQFNREWIHFIRFISLIIDRFEMT 468 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + IR + + D + Q+ NI+SNA+ ++P GG + S EE++ Sbjct: 469 KEQHVEFIR-QLPDRSLYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSVNVNEEEELL 527 Query: 739 -LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V+D G+G+ ++EK + F ++ ++ + GTGLGL +AK MV A+ G + S Sbjct: 528 YISVKDEGIGIPKKDMEKIFERFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSI 587 Query: 798 PAKGTLIEIIFP 809 KGT + P Sbjct: 588 EGKGTTVTFTLP 599 >gi|209547648|ref|YP_002279565.1| integral membrane sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533404|gb|ACI53339.1| integral membrane sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 759 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 130/255 (50%), Gaps = 12/255 (4%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D+++ + A++ AE S+ KS LA VSHE+RTPL+ ++G + ++ R Sbjct: 217 RDVTDERLIAQGREEARQKAEYNSAAKSRLLATVSHEVRTPLSGLLGMTHLLAETRL--- 273 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 +Y I +SG+ + +V DLLD S IE G+ LH SL + + + ++ Sbjct: 274 -TQEQQDYLANIRQSGHALTQLVEDLLDFSTIEVGRFALHPRSESLRKLLESVVEMLAHR 332 Query: 679 ANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A+EK I I + ++++P ++ D ++Q+ N++ NA+ FT GG I +++ Sbjct: 333 AHEKGIEIGATVSSDVPENMSFDPARLRQVLFNVIGNAVKFTQVGGVFI--RVSLDADDL 390 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI--RGEGTGLGLPLAKAMVDANMGKFYIF 795 + V D+G GMT E+ + FG+ + R GTGLGL ++ ++ G + Sbjct: 391 SITVTDSGPGMTA---EEQARVFGEFEQGGTVADRSSGTGLGLAISARIMREFNGTLTVA 447 Query: 796 STPAKGTLIEIIFPL 810 S +G+ I FP+ Sbjct: 448 SEKGRGSEFTIRFPV 462 >gi|291537656|emb|CBL10768.1| Signal transduction histidine kinase [Roseburia intestinalis M50/1] Length = 437 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 132/244 (54%), Gaps = 14/244 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 KQ + L+HA+ + +F A VSHE++TPLTAI G++E+I + G G Sbjct: 208 KQHMDILNHAQM--------RQEFTANVSHELKTPLTAISGYAELIAS---GMTGGEDTA 256 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +AN I +S + ++ND++ +S+++ + L FE V L + + I +Q+ A++ + Sbjct: 257 HFANEIHKSAERLQALINDIIKLSELDDSDLKLEFETVDLHDLGEQCIHSMQMQADKNEV 316 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + A+ +P + + ++++ N+ SNA+ + GG + I TT N +L V+DT Sbjct: 317 TLHLEGAS-VP-MNGNKTLLEELLFNLCSNAVRYNKKGGSVTIVTT-IENTRPVLIVKDT 373 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + E+ + F ++ S+ GTGLGL + K +V + + + S GT I Sbjct: 374 GIGIPKEQQERVFERFYRVDKSRSKSTGGTGLGLAIVKHIVAQHDAQMTLTSEVGVGTEI 433 Query: 805 EIIF 808 +I+F Sbjct: 434 KIVF 437 >gi|94270344|ref|ZP_01291716.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93450841|gb|EAT01870.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 404 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 74/249 (29%), Positives = 127/249 (51%), Gaps = 20/249 (8%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A+ + KS+FLA +SHEIRTP+ +IG + ++ + + YA I SG + Sbjct: 164 AQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLAEDL----SDEQRSYAQIIMSSGQAL 219 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L+++N +LD SKIE+G++ L P S E + E L+Q A + I + + + +P + Sbjct: 220 LELINQILDFSKIEAGRLELDCRPFSPRELIQEVAVLLQPQAAAQNITLTSEVSPGVPAV 279 Query: 698 L-ADLRSVKQIALNILSNAIHFTPSGGQII--------ISTTHTSNEEVILRVRDTGVGM 748 + D ++Q+ LN++ NAI FT GG + + H S + V+D+G+G+ Sbjct: 280 VEGDPVRLRQVLLNLVGNAIKFTEIGGVAMELSPAPADPAAPHCS---LHFAVKDSGIGI 336 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L+ + F Q+ S + GTGLGL + + +++ G+ + S KG+ Sbjct: 337 PAEKLDLLFQRFQQVDGSTCRKYGGTGLGLAICRRLMELMGGEIGVESEEGKGSTFWFTV 396 Query: 809 PLYDTSHPH 817 PL PH Sbjct: 397 PL----RPH 401 >gi|331673738|ref|ZP_08374501.1| signal transduction histidine-protein kinase AtoS [Escherichia coli TA280] gi|331069011|gb|EGI40403.1| signal transduction histidine-protein kinase AtoS [Escherichia coli TA280] Length = 612 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 92/398 (23%), Positives = 187/398 (46%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 233 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 292 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 293 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 345 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 346 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 400 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q + + EY + + + + + ++ LL+ S+ Sbjct: 401 AHEVRNPLTAIRGYVQILRQQTSDLI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 456 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 457 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELNPINADRELLKQVLLNIL 512 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 513 INAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFF------TTKAS 566 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 567 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 604 >gi|256751996|ref|ZP_05492865.1| PAS/PAC sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus CCSD1] gi|256749106|gb|EEU62141.1| PAS/PAC sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus CCSD1] Length = 361 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 126/231 (54%), Gaps = 5/231 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVND 643 +S+F+A VSHE+RTPLT+I GF E ++N G + NP+ + + + ID + ++ND Sbjct: 133 RSEFVANVSHELRTPLTSIRGFIETLRN---GAIDNPQARDKFLDIIDFESERLTRLIND 189 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 +L +S+IE+ K E + LD + + + ++ A K I ++ I + Sbjct: 190 ILTLSEIENVKEGYPKEEIELDNEIEDILYIMDKVARNKNITLKKDLNCTDLVIKTNKDR 249 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 Q+ +N++ N I +TP GG + +ST +++I+ V D G+G++ + + + F ++ Sbjct: 250 FHQMMINLIDNGIKYTPEGGFVKVST-REEGDKIIITVEDNGIGISKENIPRLFERFYRV 308 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 S+ + GTGLGL + K +V++ G+ ++ S +GT I F D + Sbjct: 309 DKSRSRKLGGTGLGLAIVKHIVESMKGEIFVESEVGRGTKFIIKFNKTDLT 359 >gi|229171763|ref|ZP_04299335.1| hypothetical protein bcere0006_8810 [Bacillus cereus MM3] gi|228611660|gb|EEK68910.1| hypothetical protein bcere0006_8810 [Bacillus cereus MM3] Length = 896 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 125/242 (51%), Gaps = 13/242 (5%) Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 + S +KS+FLA +SHE+RTPL +I+ SE++K L + IE A I SG +L Sbjct: 491 RSSKYKSEFLANMSHELRTPLNSILLLSEMLKENHDNHLSDDE-IELATVIHSSGKDLLT 549 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL- 698 ++ND+LD+SK+E+GK+++ FE ++ + + A +K + ++ IP + Sbjct: 550 LINDILDLSKVEAGKLDVIFEATNISDMAANMHQNFLHIAAKKNVEFMIEDSDAIPDLFY 609 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQII----ISTTH-------TSNEEVILRVRDTGVG 747 D + ++QI N+LSNA FT G + I TTH SN+ + + V+DTG+G Sbjct: 610 TDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTHLSDDMQSISNDWMTISVKDTGIG 669 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + + + F Q + + GTGLGL + K G + S +G+ + Sbjct: 670 IAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVY 729 Query: 808 FP 809 P Sbjct: 730 IP 731 >gi|212543489|ref|XP_002151899.1| two-component osmosensing histidine kinase (Bos1), putative [Penicillium marneffei ATCC 18224] gi|210066806|gb|EEA20899.1| two-component osmosensing histidine kinase (Bos1), putative [Penicillium marneffei ATCC 18224] Length = 1319 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 77/251 (30%), Positives = 134/251 (53%), Gaps = 14/251 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPLG 619 +S + + + A++ AE+ + KS+FLA +SHEIRTP+ IIG +++ + P Sbjct: 720 VSNLRDSIQRNTAAREAAEQANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDDLKPY- 778 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 PR E N + N +L I++D+LDISKIE+ +M + P ++ V A+ + + A Sbjct: 779 -PR--EMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKA 835 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 NEK + + +++P ++ D ++QI LN++ NAI FT G++ ++ + + E+ Sbjct: 836 NEKFLNLAYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFTEH-GEVKLTISKSEREQCA 894 Query: 739 -------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 V DTG+G+ +L+ F Q S R GTGLGL ++K +V+ G Sbjct: 895 RDEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGD 954 Query: 792 FYIFSTPAKGT 802 ++ S G+ Sbjct: 955 VWVTSEYGHGS 965 >gi|86607438|ref|YP_476201.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-3-3Ab] gi|86555980|gb|ABD00938.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-3-3Ab] Length = 1523 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 116/221 (52%), Gaps = 8/221 (3%) Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 S FLA +SHEIRTP+ A++G + ++ PL N ++ I SG+ +L ++ND+L Sbjct: 850 SSFLATMSHEIRTPMNAVLGMTGLLLET---PL-NAEQRDFVETIRVSGDALLTLINDIL 905 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSV 704 D SK+E G+M L L + E L A+ K + + +PR L D + Sbjct: 906 DFSKLEVGEMELEILDFDLRSCLEEVADLFAPTAHAKGLELAVLVPPEVPRYLRGDASRL 965 Query: 705 KQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 +QI N++SNAI FT G +I + ++ ++ L VRDTG+G+ K +PF Sbjct: 966 RQILNNLVSNAIKFTHQGEVVIQAELMQETATHVQLRLSVRDTGIGIPKDAQTKLFQPFT 1025 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 Q+ S + GTGLGL + K + + G+ ++ S +G+ Sbjct: 1026 QVDASTTRKYGGTGLGLAICKQLTELMGGRIFLESEEGRGS 1066 >gi|298480193|ref|ZP_06998391.1| two-component system sensor histidine kinase/response [Bacteroides sp. D22] gi|298273474|gb|EFI15037.1| two-component system sensor histidine kinase/response [Bacteroides sp. D22] Length = 1365 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 123/243 (50%), Gaps = 14/243 (5%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 E+NK+ E+ S K F +SHE+RTPL+ I+ E + Q L + Sbjct: 826 ERNKI-------EEISQEKVRFYMNMSHELRTPLSLILAPLEELLGQS--NLKGTPVQQK 876 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 +Y+ ++G +L IVN LLD K E+G M +H V ++E + +A +L + A ++ I Sbjct: 877 LDYVYKNGRKLLHIVNQLLDFRKAEAGAMPIHVAQVDVEELLQDAFALFKENAQKRAISF 936 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 AD V+ I +N+LSNA FTP GG I +S T + VRD+G+ Sbjct: 937 HIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSISLS-LWTEGDTYGFTVRDSGI 995 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 GM+ +L + F Q+ ++ GTG+GL L K +V+ + G + S PA+ T ++ Sbjct: 996 GMSPEQLTHIFERFYQVDGQRK----GTGIGLSLVKMLVEKHHGTIMVASEPAQYTEFKV 1051 Query: 807 IFP 809 P Sbjct: 1052 TLP 1054 >gi|229824433|ref|ZP_04450502.1| hypothetical protein GCWU000282_01756 [Catonella morbi ATCC 51271] gi|229786034|gb|EEP22148.1| hypothetical protein GCWU000282_01756 [Catonella morbi ATCC 51271] Length = 616 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 89/370 (24%), Positives = 173/370 (46%), Gaps = 32/370 (8%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 +E E +L IL +DG+ +R G +L N +L G + + L Sbjct: 259 IESERQRLDGILRYMTDGVIATDRRGNVLLVNERALQLLGIDQQSAIGISIIRLLRLKD- 317 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEW 564 + LT++L D ++ + G E +L +I ++ F + + D++E Sbjct: 318 ---QYTLTDLLGDDREILMDWVDHG---EYSILKGEFSVIRRETGFVTGVVCVLTDVTE- 370 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGNPRY 623 EK + DF++ VSHE+RTPLT+I ++E ++ + + P++ Sbjct: 371 -------------QEKTEQERRDFVSNVSHELRTPLTSIKSYTEALREGAWQDEVIAPQF 417 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS----LVQLYA 679 + N I + ++ ++ +LLD+SKI G+ L+ E + VS + +++ Sbjct: 418 L---NVIQLETDRMMRMIGNLLDLSKIHEGQYKLNLEYIDFKRMVSHILDRFEFMLEQNP 474 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 ++K+ ++ F + + D V Q+ NIL+NAI ++P GG +I+ S+ V L Sbjct: 475 DQKKFKLKRDFTSREIYLEIDQDRVTQVIDNILNNAIKYSPDGG-VIVVKIEDSHSHVHL 533 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 ++D G+G+ ++ + F ++ ++ GTGLGL ++K +++ + GK + S Sbjct: 534 SIKDQGLGIPQKDIPHLFQRFYRVDKARSREQGGTGLGLAISKEIIELHGGKIWATSVEG 593 Query: 800 KGTLIEIIFP 809 KG+ P Sbjct: 594 KGSTFGFDLP 603 >gi|229526741|ref|ZP_04416145.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae bv. albensis VL426] gi|90074862|dbj|BAE87106.1| LuxQ [Vibrio cholerae bv. albensis] gi|229336899|gb|EEO01917.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae bv. albensis VL426] Length = 857 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 87/319 (27%), Positives = 155/319 (48%), Gaps = 17/319 (5%) Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS------SCYSLTMH--DI 561 NH+L EIL L T+ K G+ + + + + S S+ DI Sbjct: 397 NHFLFEILERQLLPTITKAAQGNNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDI 456 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 + + + + A++ AE+ + +++FLA++SHE+RTPL ++G S+++K PL N Sbjct: 457 TTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT---PL-ND 512 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 E+ + SG +L ++ND+LD S++E GK + L E V + + +E Sbjct: 513 EQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCHE 572 Query: 682 KRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EV 737 K + L+ S + +D + QI N+L+NAI FT G I + + ++ Sbjct: 573 KGLELVVNSNITTATIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGDPLAQL 631 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 +++V DTG+G+ +L +PF Q ++ G+GLGL + ++V+ G+ ++ S Sbjct: 632 VIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSE 691 Query: 798 PAKGTLIEIIFPLYDTSHP 816 GT EI P+ P Sbjct: 692 YGIGTRFEIQLPIELVERP 710 >gi|302555751|ref|ZP_07308093.1| two-component system sensor kinase [Streptomyces viridochromogenes DSM 40736] gi|302473369|gb|EFL36462.1| two-component system sensor kinase [Streptomyces viridochromogenes DSM 40736] Length = 1424 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/259 (29%), Positives = 127/259 (49%), Gaps = 16/259 (6%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN--PR 622 +Q + +L K S +KS+FLA +SHE+RTPL + + + P N P+ Sbjct: 844 EQARQELEDRAKQLSSASKYKSEFLANMSHELRTPLNS---LLILAQLLAQNPSRNLTPK 900 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +EYA I +G+ +L ++ND+LD+SK+E+GKM++ E V L + + + +K Sbjct: 901 QVEYAGIIHSAGSDLLQLINDILDLSKVEAGKMDVAPERVPLRRLLDYVEATFRPMTTQK 960 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII----------STTH 731 + + A P ++ D ++Q+ N+LSNA+ FT GG ++ H Sbjct: 961 GLTFAITSAPGAPADLVTDDARLRQVLRNLLSNAVKFTERGGVTLLIEPASDAEVPEPVH 1020 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 V RV DTG+G+ +LE F Q + + GTGLGL + + + G Sbjct: 1021 RGGPVVAFRVEDTGIGIPEQQLETIFGAFQQADGTTSRKYGGTGLGLSITREIAHLLGGA 1080 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + STP +G+ + P+ Sbjct: 1081 VTVDSTPGQGSTFTLYLPV 1099 >gi|163739669|ref|ZP_02147078.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis BS107] gi|161387128|gb|EDQ11488.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis BS107] Length = 842 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 128/243 (52%), Gaps = 14/243 (5%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L++AK+ AEK K++FLA +SHEIRTP+ IIG S+++ PL + + + Sbjct: 447 QLTYAKQAAEKADQAKTEFLANMSHEIRTPMNGIIGMSDILAES---PLSAEQE-QCVDT 502 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I S +L I+ND+LD+S++E+GKM + +L + V A+ +++ EK + + Sbjct: 503 IRDSSVALLKIINDILDLSRLEAGKMEISTVDFNLRKCVDGAVDVLRPKLREKGLTFTQT 562 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EVILRVRD 743 FA +P ++ D ++QI +N+LSNA+ FT G + H S + + + V D Sbjct: 563 FARELPEQVHGDDGRLRQILVNLLSNAVKFTQYGS----VSLHVSRDVKDPYHLFIDVVD 618 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G++ + + F Q + GTGLGL ++ + G + S +G+ Sbjct: 619 TGIGISEDQARHVFERFSQADAATTRHYGGTGLGLTISNILAQRMGGGISLNSNEGQGSC 678 Query: 804 IEI 806 + Sbjct: 679 FRL 681 >gi|332982124|ref|YP_004463565.1| PAS/PAC sensor signal transduction histidine kinase [Mahella australiensis 50-1 BON] gi|332699802|gb|AEE96743.1| PAS/PAC sensor signal transduction histidine kinase [Mahella australiensis 50-1 BON] Length = 430 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 123/236 (52%), Gaps = 3/236 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K++ +A +SHEI+TPLT+I GF+E + + R + ID + + ++ND Sbjct: 196 KAELVANMSHEIKTPLTSIKGFAETLLDGAMDDRETCR--RFLTIIDSEADRMSRLINDS 253 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 L +S++ES N+ EP++L E + + +V A K I + +I + + Sbjct: 254 LTLSRLESQDRNISIEPINLHELIVNILDMVDSSAKTKNIDVTFYDQATDMKIDGNEDRM 313 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 Q+ LN++ NAI +TPSGG++ I T E+ + V+DTG+G+ + + + F ++ Sbjct: 314 HQLMLNLIDNAIKYTPSGGKVTI-TIKDEGEDAFISVKDTGIGIAKEHMPRLFERFYRVD 372 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 + GTGLGL + K +V + G + S +GT + P + ++HP D + Sbjct: 373 KGRSRNMGGTGLGLAIVKHVVMSMNGTIDVNSELGRGTEFIVRLPKHYSAHPSDPV 428 >gi|218531747|ref|YP_002422563.1| Hpt sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218524050|gb|ACK84635.1| Hpt sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 909 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 125/243 (51%), Gaps = 7/243 (2%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + + L AK+ A++ ++ KS FLA +SHEIRTP+ ++ +E++ + PR Sbjct: 251 EIRLRTHDLIEAKQSADEANAAKSVFLATMSHEIRTPMNGMLVMAELLASADL----PPR 306 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 YA I RSG +L I+ND+LD +K+E+G++ + P+S + ++L A Sbjct: 307 QQRYAQVIARSGQSLLAIINDILDFAKVEAGRLEVERIPLSPRDVADTVVTLFAERARSA 366 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + + ++PR +L D + Q+ N +SNA+ FT +G ++ +LR+ Sbjct: 367 GLDLAAQIDGDVPRSLLGDPVRLGQVLGNFVSNALKFTATGHVLVRMEMEREASGPVLRI 426 Query: 742 R--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 DTG+G+ L F Q S R GTGLGL +A+ ++ A G+ + S Sbjct: 427 AVFDTGIGIPQDRLSGIFTAFTQADQSIARRFGGTGLGLSIAERLIVAMGGRVGVESRLG 486 Query: 800 KGT 802 +G+ Sbjct: 487 EGS 489 >gi|172062325|ref|YP_001809976.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] gi|171994842|gb|ACB65760.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] Length = 1032 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 86/259 (33%), Positives = 131/259 (50%), Gaps = 10/259 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI+ KQ + KL A+ AE + KS FLA +SHEIRTPL AIIG E+++ + Sbjct: 494 TLLDITTRKQAEEKLREARAAAEFANKAKSTFLATMSHEIRTPLNAIIGNLELMERAQMA 553 Query: 617 -PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 PL I S + +L ++ND+LD+SK ES +M L P L V++ ++ Sbjct: 554 VPLRR-----RLGTIMSSSDALLRVINDVLDLSKAESNQMVLESIPFDLRRVVNDVAAIF 608 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTH 731 + A+ K + + A ++ + D ++Q+ N++SNAI FT GG I ++ Sbjct: 609 RPLADAKNLALTCRIAPDLANGYVGDSTRLRQLVSNLVSNAIKFTKRGGVTIDVRLAKAG 668 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + V + V DTG+G+ L + Q S R GTGLGLPL + +V G Sbjct: 669 PAGRGVEIAVSDTGIGIPEDSLPTLFDVYVQTDASIYRRFGGTGLGLPLCRRIVTLMGGA 728 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + S +GT+ PL Sbjct: 729 LNVDSRLGEGTIFVAALPL 747 >gi|148658559|ref|YP_001278764.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148570669|gb|ABQ92814.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 718 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 70/258 (27%), Positives = 135/258 (52%), Gaps = 17/258 (6%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 ++ +HDI++ K E+ + DF++ VSHE+R PL + GF +++ +R Sbjct: 475 AIVLHDITDHKAEERA--------------RMDFISMVSHELRNPLHTLNGFVKLVLQER 520 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 GPL + + ++ D + V +LL+ ++ ++G++ L + L ++ ++ Sbjct: 521 AGPLTSLQQ-DFLKMADEQIEQLSSRVAELLEYNRFKAGRLALQPDVGDLALLIAGTVNR 579 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 ++L A ++++ + S ++P D + + Q+ N++ NAI TP+GG I +S + Sbjct: 580 LKLQAEQQQLAL-VSHVTHLPLCRFDGQRIGQVLTNLIENAIKATPAGGTISVSAD-VHD 637 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +EV +RV DTGVG+ EL K + F Q+ ++ G GLGL + + +V+ + G+ ++ Sbjct: 638 QEVRVRVSDTGVGIPASELGKIFQRFYQVAKHRRTHGNNLGLGLAICQQIVEGHGGRIWV 697 Query: 795 FSTPAKGTLIEIIFPLYD 812 S GT PL D Sbjct: 698 ESEEGVGTTFTFTLPLAD 715 >gi|315918685|ref|ZP_07914925.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|313692560|gb|EFS29395.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 417 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 79/255 (30%), Positives = 127/255 (49%), Gaps = 14/255 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +DI+ K+ + KL A+ AE+ KS FLA +SHEIRTPL AI+GFS ++ Sbjct: 172 YDITPLKETEQKLIIARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETD---- 227 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 EY + + L+L +++D+LD+SKIE+G N + V ++E SE I + + Sbjct: 228 SRSERQEYIKIVQENNELLLQLISDILDLSKIEAGTFNFVYTNVDVNETCSEIIKSMGMK 287 Query: 679 ANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 + LI P I D Q+ N ++NA+ FT G I + S+++ Sbjct: 288 VGKGVELI---LEEPFPECYIYTDKNRFTQVISNFINNALKFTQQ-GSITLGYEQVSHQK 343 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + VRDTG+G+ + + + F ++ Q GTGLGL + K++V G+ + S Sbjct: 344 IKFYVRDTGMGIPEEKQKSVFERFVKLNTFVQ----GTGLGLSICKSIVSQMGGEIGVES 399 Query: 797 TPAKGTLIEIIFPLY 811 T G+ P + Sbjct: 400 TEGVGSCFWFTHPYH 414 >gi|295109066|emb|CBL23019.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162] Length = 684 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 128/241 (53%), Gaps = 14/241 (5%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A+ + K+ FL +SH+IRTP+ AIIGFSE+++ + I+Y I S N + Sbjct: 301 AKNANEAKTRFLFNMSHDIRTPMNAIIGFSELLEKH---IDEKDKAIDYLGKIKSSSNFL 357 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA-NEKRILIRTSFANNIPR 696 L ++N +L++++IESGK+ L E + E + SL ++ K+ I S +I Sbjct: 358 LSLINYVLEMARIESGKLALKKEVGCVTELIE---SLTDVFEPGVKKKFITYSCETDIQH 414 Query: 697 --ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILR--VRDTGVGMT 749 ++ D V++I +NI+ N++ +TP GG+I +S E+ + R V D G+GM+ Sbjct: 415 KYVIGDETKVREIFINIIGNSVKYTPEGGKISVSVKEEPFEKENYIAYRIIVEDNGIGMS 474 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L + F + S + + GTGLGLP+ K+++D G + S GT + ++ P Sbjct: 475 KEYLPHIFEEFSREHTSTESKVTGTGLGLPIVKSLIDMMGGTIEVESQLGCGTNMNVVLP 534 Query: 810 L 810 Sbjct: 535 F 535 >gi|293405686|ref|ZP_06649678.1| sensory histidine kinase AtoS [Escherichia coli FVEC1412] gi|298381368|ref|ZP_06990967.1| signal transduction histidine-protein kinase atoS [Escherichia coli FVEC1302] gi|291427894|gb|EFF00921.1| sensory histidine kinase AtoS [Escherichia coli FVEC1412] gi|298278810|gb|EFI20324.1| signal transduction histidine-protein kinase atoS [Escherichia coli FVEC1302] Length = 612 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 92/398 (23%), Positives = 187/398 (46%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 233 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 292 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 293 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 345 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 346 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 400 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q + + EY + + + + + ++ LL+ S+ Sbjct: 401 AHEVRNPLTAIRGYVQILRQQTSDLI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 456 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 457 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELNPINADRELLKQVLLNIL 512 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 513 INAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFF------TTKAS 566 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 567 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 604 >gi|88857764|ref|ZP_01132407.1| probable sensor/response regulator hybrid [Pseudoalteromonas tunicata D2] gi|88820961|gb|EAR30773.1| probable sensor/response regulator hybrid [Pseudoalteromonas tunicata D2] Length = 650 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 85/236 (36%), Positives = 128/236 (54%), Gaps = 10/236 (4%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +D++E N L+ AK AE + KSDFLA +SHEIRTP+ AI+G +++++ + Sbjct: 417 YDVTEKVIAMNTLAKAKLAAENAAKAKSDFLANMSHEIRTPMNAILGGLQLLQSAQLED- 475 Query: 619 GNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV-SEAISLVQ 676 N R I + A Y S +L I+ND+LD SKIES K+ L P SL + V S L Sbjct: 476 -NLRIILDNATY---SAQSLLTIINDILDYSKIESNKLELEQAPFSLVDVVDSVKYDLDA 531 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE 735 +N+ + T + + D VKQI LN++SNA+ FT +G ++ I T ++ Sbjct: 532 QISNKGLDFVVTIDERFVDGWVGDFVRVKQILLNLVSNAVKFTHNGHVELTIDYTRYHDQ 591 Query: 736 E-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + V + V D+G+GM +K + F Q S + GTGLG+ + +V A MG Sbjct: 592 QAVCINVIDSGIGMNEEAQQKIFERFSQADTSTTRQYGGTGLGMSITSNLV-ALMG 646 >gi|332139982|ref|YP_004425720.1| putative signal transduction histidine kinase two-component system with Protein-glutamate methylesterase domain [Alteromonas macleodii str. 'Deep ecotype'] gi|327550004|gb|AEA96722.1| putative signal transduction histidine kinase two-component system with Protein-glutamate methylesterase domain [Alteromonas macleodii str. 'Deep ecotype'] Length = 941 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 120/221 (54%), Gaps = 11/221 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY-ANYIDRSGNLVLDIVND 643 K+ FLA +SHEIRTP+ IIG E++ + P ++ A I RS +L I++ Sbjct: 576 KTQFLANMSHEIRTPMNGIIGSCELMLDSEL-----PEHVAARAKVISRSAANLLMILDS 630 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLR 702 +LD SKIESGKM + + ++ E + + L + A K I + + +P++L D Sbjct: 631 ILDYSKIESGKMRIDIQSCAIRELLESSCELYRHSAKAKEYDIHLNVDSGVPKVLDIDAG 690 Query: 703 SVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 + QI N+LSNA+ FT G + +S H + + V V DTGVG+ +L+ + F Sbjct: 691 KISQIINNLLSNAVKFTSEGSVSVNVSYAHHALKVV---VSDTGVGIAPEKLDLIFEQFE 747 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 Q ++ GTGLGLP++K +++ G+ ++ S KGT Sbjct: 748 QADSTTTRHFGGTGLGLPISKGLIELLDGQLFVESELGKGT 788 >gi|227812276|ref|YP_002812286.1| sensor protein TorS [Vibrio cholerae M66-2] gi|298499508|ref|ZP_07009314.1| TMAO reductase system sensor TorS [Vibrio cholerae MAK 757] gi|227011418|gb|ACP07629.1| sensor protein TorS [Vibrio cholerae M66-2] gi|227015228|gb|ACP11437.1| sensor protein TorS [Vibrio cholerae O395] gi|297541489|gb|EFH77540.1| TMAO reductase system sensor TorS [Vibrio cholerae MAK 757] Length = 1020 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 80/255 (31%), Positives = 126/255 (49%), Gaps = 10/255 (3%) Query: 561 ISEWKQEKNK--LSHAK--KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 +SE + N+ L+HAK + AE+ S KS FLA +SHEIRTP+ ++G + ++++ Sbjct: 478 LSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLT 537 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 Y I+RSG +L I+ND+LD SKIE+G + +H L VSE L+Q Sbjct: 538 STQQ----HYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVSETHELMQ 593 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A EK I + ++ + D + Q+ N++ N I FT G I + Sbjct: 594 SRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKFTDQGEVRIRIRLAPDGQ 653 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V D+G+G+ E F Q ++ G GTGLGL +++ +V A G+ + Sbjct: 654 GIRFAVEDSGIGIAEEEQATLFDAFTQADAGRRKLG-GTGLGLAISRKLVQAMGGELQLA 712 Query: 796 STPAKGTLIEIIFPL 810 S +G+ PL Sbjct: 713 SQLGQGSCFWFTLPL 727 >gi|171056745|ref|YP_001789094.1| histidine kinase [Leptothrix cholodnii SP-6] gi|170774190|gb|ACB32329.1| histidine kinase [Leptothrix cholodnii SP-6] Length = 215 Score = 111 bits (278), Expect = 4e-22, Method: Composition-based stats. Identities = 67/198 (33%), Positives = 104/198 (52%), Gaps = 4/198 (2%) Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 FG L N R +EY + I SG+ +L ++ND+LD++KIE+G+M L P L + + AI L Sbjct: 2 FGEL-NQRQLEYLHDIHASGHHLLQLINDILDLTKIEAGRMELELAPCDLAQLLESAIGL 60 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 ++ A + + + A + AD R +KQ LN+LSNA+ FTP GG++ + Sbjct: 61 IRERATRQGLRLHCEIAPGLGGWTADARKLKQAVLNLLSNAVKFTPEGGRVTLRARRADE 120 Query: 735 EE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + V DTGVG+ + + F Q S + EGTGLGL L + V+ + G Sbjct: 121 GDAHVAEIAVIDTGVGIAPGDQALVFEEFRQASGSYLRKSEGTGLGLSLVRRFVELHGGT 180 Query: 792 FYIFSTPAKGTLIEIIFP 809 + S +G+ I P Sbjct: 181 VRVDSVLGRGSSFVIRLP 198 >gi|167829786|ref|ZP_02461257.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 9] Length = 766 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 100/380 (26%), Positives = 172/380 (45%), Gaps = 23/380 (6%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +R+ L ++EA+ D I + I S N A ++FGY ++ + V + Sbjct: 242 ERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGY--DEHAARGCDVAMLI 299 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSC--YSLT 557 + NH L E + D+R+ +E + + +++ +R + P +C SLT Sbjct: 300 APRWLRNHPLPESVP-DMREPIENVDVLCVRQDGG-RMRATMSASPVFDERDACIALSLT 357 Query: 558 MHDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + D E ++ + A++ A+ + K + LA VSHE+RTPL I G+ EV+ Sbjct: 358 LRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVL 417 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +N P+ + + IDRS + +V D+LD S + +GK+ L PV L V++ Sbjct: 418 RN----PVDGALQQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVND 473 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + A I + A + D ++Q+ N+LSNA FTP GG++ +S Sbjct: 474 VTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLE 533 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + L V DTG G++ L + F + + G GLGL + + + + + G Sbjct: 534 R-HDAQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGG 592 Query: 791 KFYIFSTPA-KGTLIEIIFP 809 K S +GT I P Sbjct: 593 KVEAASAGKNRGTTFAITLP 612 >gi|158425731|ref|YP_001527023.1| multi-sensor hybrid histidine kinase [Azorhizobium caulinodans ORS 571] gi|158332620|dbj|BAF90105.1| multi-sensor hybrid histidine kinase [Azorhizobium caulinodans ORS 571] Length = 1121 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 137/253 (54%), Gaps = 6/253 (2%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 +L M +I K+ KL AK++AE + KS ++ +SHE+RTPL AI+G++++++ Sbjct: 642 TLLMREIEAHKRTDAKLQKAKEVAEAANLAKSRYVVGISHELRTPLNAILGYAQLLERDT 701 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P I + RS + +++ LLDISKIE+G+++L+ + V + + + + + + Sbjct: 702 SIPAHRRDAI---RVVRRSSEHLSGLIDGLLDISKIEAGRLHLYRDEVRIRDLLDQLVDM 758 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +L A+ + I + +P ++ D + ++QI +N+LSNAI FT + G + + T+ Sbjct: 759 FRLQASARGIEFIHMRSERLPAVVFTDEKRLRQILINLLSNAIKFT-AKGHVALRVTY-R 816 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 N+ V DTG+G+ E + +PF + G GLGL + K + + G+ Sbjct: 817 NQVAEFEVEDTGIGIAPEERGRIFEPFERGSRGGAFNAIGIGLGLTITKLLTEIMGGEIS 876 Query: 794 IFSTPAKGTLIEI 806 + S KG+ ++ Sbjct: 877 LKSELDKGSTFKV 889 >gi|325522091|gb|EGD00759.1| two-component system capsular synthesis sensor histidine kinase [Burkholderia sp. TJI49] Length = 713 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 75/255 (29%), Positives = 123/255 (48%), Gaps = 8/255 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++ +Q +L A + A+ ++ KS FLA +SHEIRTPL I+G E++ Sbjct: 461 DVTAKRQLVRQLEEAVRAADSANAAKSSFLAAMSHEIRTPLNVILGNLELLDRHALDLSQ 520 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R + + +L++V+ +LD SKIE+G M++ + ++ + A Sbjct: 521 RSR----VRTLRTAAAGLLELVSGILDFSKIEAGAMSVESIEFDVMGVIARELGAFAPVA 576 Query: 680 NEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG---GQIIISTTHTSNE 735 K + L A+ R+ D + Q+ N+LSNAI FT G ++++ Sbjct: 577 KAKGLSLFCEIAASRTQRMRGDPTRLAQVFGNLLSNAIKFTAQGHVTARVLVVRGECGAA 636 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 E+ + V DTG+G+ +L K K F Q+ + R GTGLGL L +V A G+ + Sbjct: 637 ELAIAVEDTGIGIGGADLHKLFKAFSQVDATITRRYGGTGLGLALCDRLVTAMGGRISVT 696 Query: 796 STPAKGTLIEIIFPL 810 S P G+ + PL Sbjct: 697 SAPGAGSCFTVRVPL 711 >gi|229587665|ref|YP_002869784.1| putative two-component system sensor kinase [Pseudomonas fluorescens SBW25] gi|229359531|emb|CAY46372.1| putative two-component system, sensor kinase [Pseudomonas fluorescens SBW25] Length = 595 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 85/365 (23%), Positives = 169/365 (46%), Gaps = 35/365 (9%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L ++L++ DG+ +I+R+G + N + G+ E + + + P + Sbjct: 259 RLQAVLDSIDDGLLMIDRQGRLEHLNPVAQRQLGWDEERLGQGLGEALVR---PELDEQL 315 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS------LTMHDISEWKQ 566 + L + E + + E +LL+ + P S + +HD++E + Sbjct: 316 QLVLRGGSLERAPEDLEVEVEGELRLLTYSLT----PVSHTQGHILGAVMVLHDVTEQRA 371 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI-IGFSEVIKNQRFGPLGNPRYIE 625 + +S+F+ R SHE+RTP+T + + F + +F P + R + Sbjct: 372 FERV--------------RSEFVLRASHELRTPVTGMHMAFGLFRERAKFPP--DSREAD 415 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + ++ ++ ++NDLL+ S+ ++G L P + + + A + AN + + Sbjct: 416 LLDTVNEEMQRLMQLINDLLNFSRYQNGLQKLTLGPCDVTDLLEHARARFVEPANVQNVE 475 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + +++PR+ AD ++++ N+L NA+ TP+GGQI + E VI+ V D G Sbjct: 476 LMVEAQSDLPRLYADQAQLERVLDNLLGNALRHTPNGGQIRLQ-ARRHGERVIISVEDNG 534 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 G+ + + +PF Q+ + G GLGL L K +V + G+ ++S P +GT Sbjct: 535 EGIAYGQQGRIFEPFVQVGRKKG----GAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFY 590 Query: 806 IIFPL 810 + PL Sbjct: 591 MALPL 595 >gi|284052622|ref|ZP_06382832.1| two-component hybrid sensor and regulator [Arthrospira platensis str. Paraca] Length = 574 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 121/226 (53%), Gaps = 8/226 (3%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 N L + A KS FLA++SHEIRTP++ ++G E++ P+ +Y Sbjct: 353 NNLVETRNAALDAVQFKSRFLAQMSHEIRTPMSGVLGMVELLMQTHL----TPQQKDYTP 408 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I R +L ++N++LD+SK+E+G+ +L L + + + L+ + A +K++ + Sbjct: 409 TIYRRAKHLLTVINEILDLSKLEAGETHLESHDFDLQDCLETVVDLLSVKAEDKQLELII 468 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDT 744 NIPR L D ++Q+ +N+++NAI FT SG II T N++ I + DT Sbjct: 469 LLEPNIPRYLKGDGMRLQQVLINLVNNAIKFTQSGHIIIRLTPRLINQDQINIYFSIEDT 528 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 G+G+++ + +PF ++ + GTGLGL + + +V+ G Sbjct: 529 GLGISDELQPQLFQPFSPASSATNRQYSGTGLGLSICQHLVNLMGG 574 >gi|299149292|ref|ZP_07042352.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298512726|gb|EFI36615.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 992 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 74/249 (29%), Positives = 130/249 (52%), Gaps = 10/249 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+ K+ + +L+ A+ AE+ + KS FLA +SHEIRTPL AI+GFS ++ + Sbjct: 607 ITTRKKMEMELTTARDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTD----EE 662 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 EY + I+ + L+L +++D+LD+SKIE+G + + + L++ ++E S +QL Sbjct: 663 EEKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLEFQYSNIDLNKMLNELTSSLQLKIK 722 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 +++ + A I + + Q+ +N++SNAI FT G I +E+ Sbjct: 723 SEKVQLTCHLAEKNCFIHTEKNRLSQLLINLISNAIKFTTEG--YIRFGYELRGKEIYFY 780 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG G+ + + F ++ + +Q GTGLGL + + +V+ G + S K Sbjct: 781 VSDTGCGIPKDKQKSIFGRFVKLNSFEQ----GTGLGLSICQTLVEHMGGTIGVDSEEGK 836 Query: 801 GTLIEIIFP 809 G+ P Sbjct: 837 GSTFWFTLP 845 >gi|291326854|ref|ZP_06126082.2| TMAO reductase sytem sensor TorS [Providencia rettgeri DSM 1131] gi|291312834|gb|EFE53287.1| TMAO reductase sytem sensor TorS [Providencia rettgeri DSM 1131] Length = 907 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 89/258 (34%), Positives = 129/258 (50%), Gaps = 37/258 (14%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN---YI 630 A+ AE+ + KS FLA +SHEIRTPL I+G ++++ L N +Y + I Sbjct: 423 ARSEAEQANQAKSAFLAAMSHEIRTPLYGILGTAQLL-------LENKALSQYHDDLYAI 475 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLH-----FEPVSLDEA------VSEAISLVQLYA 679 SG +L I+ND+LD S IE+G N+ FEP L E+ S S +QL A Sbjct: 476 TDSGESLLAILNDILDYSAIEAGGQNVSINDEPFEPKPLLESTLYLMNASNKNSAIQLVA 535 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + A+++P L D ++QI N+LSNA+ FT GQI + + I Sbjct: 536 D---------IADDLPIALQGDPLRIRQIITNLLSNALRFTQK-GQITLRSCRYGKYWFI 585 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG G+ + KPF Q+ + RG GTGLGL ++ ++ A G+ + S Sbjct: 586 -EVEDTGCGIDSSRFTDIFKPFVQVDSQ---RG-GTGLGLTISASLAQAMGGELTVSSQL 640 Query: 799 AKGTLIEIIFPLYDTSHP 816 G+ + PL TSHP Sbjct: 641 GSGSCFRLTLPLCITSHP 658 >gi|217424292|ref|ZP_03455791.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 576] gi|217392757|gb|EEC32780.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 576] Length = 818 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 100/380 (26%), Positives = 172/380 (45%), Gaps = 23/380 (6%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +R+ L ++EA+ D I + I S N A ++FGY ++ + V + Sbjct: 292 ERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGY--DEHAARGCDVAMLI 349 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSC--YSLT 557 + NH L E + D+R+ +E + + +++ +R + P +C SLT Sbjct: 350 APRWLRNHPLPESVP-DMREPIENVDVLCVRQDGG-RMRATMSASPVFDERDACIALSLT 407 Query: 558 MHDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + D E ++ + A++ A+ + K + LA VSHE+RTPL I G+ EV+ Sbjct: 408 LRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVL 467 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +N P+ + + IDRS + +V D+LD S + +GK+ L PV L V++ Sbjct: 468 RN----PVDGALQQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVND 523 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + A I + A + D ++Q+ N+LSNA FTP GG++ +S Sbjct: 524 VTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLE 583 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + L V DTG G++ L + F + + G GLGL + + + + + G Sbjct: 584 R-HDAQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGG 642 Query: 791 KFYIFSTPA-KGTLIEIIFP 809 K S +GT I P Sbjct: 643 KVEAASAGKNRGTTFAITLP 662 >gi|209695992|ref|YP_002263922.1| chitin degradation sensor protein [Aliivibrio salmonicida LFI1238] gi|208009945|emb|CAQ80259.1| chitin degradation sensor protein [Aliivibrio salmonicida LFI1238] Length = 1127 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 121/240 (50%), Gaps = 3/240 (1%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + H + E K +FLA SHE+RTPL ++G +E + GP+ + + I Sbjct: 440 IQHKNQELEAADKLKDEFLATTSHELRTPLHGMVGIAEALYTGANGPI-SASHRHQLEII 498 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG + ++VNDLLD K+ G ++++ L A S + L K I I Sbjct: 499 INSGQRLTNLVNDLLDYHKMRHGNLDINRHVADLSSATSLVLELSHHLLGNKPIRIINQV 558 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 ++P + AD + ++Q+ N++ NAI +T S G+I+IS + ++ + ++V DTG G+ Sbjct: 559 DKSLPSVYADEQRLEQVLYNLIGNAIKYT-SEGKIVISAS-VVDQFLRVQVVDTGHGIPA 616 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 ELE +P Q + +G+GLGL +++ +++ G Y+ S P G PL Sbjct: 617 DELEHIFEPLIQAGHDSNRYRQGSGLGLSISRQLIELMGGSLYVSSQPMVGATFSFTLPL 676 >gi|160885842|ref|ZP_02066845.1| hypothetical protein BACOVA_03846 [Bacteroides ovatus ATCC 8483] gi|156108655|gb|EDO10400.1| hypothetical protein BACOVA_03846 [Bacteroides ovatus ATCC 8483] Length = 992 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 74/249 (29%), Positives = 130/249 (52%), Gaps = 10/249 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+ K+ + +L+ A+ AE+ + KS FLA +SHEIRTPL AI+GFS ++ + Sbjct: 607 ITTRKKMEMELTTARDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTD----EE 662 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 EY + I+ + L+L +++D+LD+SKIE+G + + + L++ ++E S +QL Sbjct: 663 EEKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLEFQYSNIDLNKMLNELTSSLQLKIK 722 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 +++ + A I + + Q+ +N++SNAI FT G I +E+ Sbjct: 723 SEKVQLTCHLAEKNCFIHTEKNRLSQLLINLISNAIKFTTEG--YIRFGYELRGKEIYFY 780 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG G+ + + F ++ + +Q GTGLGL + + +V+ G + S K Sbjct: 781 VSDTGCGIPKDKQKSIFGRFVKLNSFEQ----GTGLGLSICQTLVEHMGGTIGVDSEEGK 836 Query: 801 GTLIEIIFP 809 G+ P Sbjct: 837 GSTFWFTLP 845 >gi|149915177|ref|ZP_01903705.1| sensory box histidine kinase/response regulator [Roseobacter sp. AzwK-3b] gi|149810898|gb|EDM70737.1| sensory box histidine kinase/response regulator [Roseobacter sp. AzwK-3b] Length = 851 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 102/380 (26%), Positives = 182/380 (47%), Gaps = 31/380 (8%) Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPS 507 I + +L +IL+ + D I ++ +G I+ TN A +FG E + V Q Sbjct: 221 ITLNRLSTILDTSEDAILVVRPDGTIIETNTAARSMFGPDNTETGKSNIYGVLYRQEEDR 280 Query: 508 VMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLS---LRIIIKKLPFSSCYSLTMHDISE 563 + E L D+R+ T L + +++ L+ L + + + DIS+ Sbjct: 281 TLTAISDEPLG-DVREGEADSTPLVARRQDGSLAAVELSANVAARSVDEVWVCFIRDISD 339 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 + ++ A+ A K+ FL R+SHE+RTPL I+G +++ + PL +P Sbjct: 340 RLAAEAEVQAARDKALSNEKAKAHFLGRISHEMRTPLHGILGTLDLMDST---PL-SPEQ 395 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 Y++ + SG ++L+ +ND LDI++ + EP+ L E V + L++ A + Sbjct: 396 TRYSDIMKSSGQVLLNQINDALDITRSSA-------EPLPLVETVFDVEQLIEDIATSQG 448 Query: 684 ILIRTS------FANNIP--RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----H 731 + N P +L D V+Q+ LN++SNAI FT +G +I I H Sbjct: 449 AVAEAHGNTIDLHVQNAPVGAVLGDRDRVQQVLLNLVSNAIKFTRNG-RISIEAARVGLH 507 Query: 732 TSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 ++ + ++V DTG+G+ ++E+ F ++ +S R EGTGLGL +A+ +V G Sbjct: 508 GKHDNIFEIQVSDTGIGIAEDDVERIFDDFVRVISSDGERTEGTGLGLGIARNLVLQMGG 567 Query: 791 KFYIFSTPAKGTLIEIIFPL 810 + S +G++ + PL Sbjct: 568 DIGVESLLGEGSVFWVRLPL 587 >gi|89900557|ref|YP_523028.1| multi-sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] gi|89345294|gb|ABD69497.1| multi-sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] Length = 1033 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/253 (30%), Positives = 129/253 (50%), Gaps = 15/253 (5%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y DI+E K+ AK+ A+ + KS FLA +SHEIRTP+ A++G + ++ Sbjct: 288 YVAIRADITERKR-------AKEAAQAATLAKSQFLANMSHEIRTPMNAVLGLTRMVLES 340 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 P + I+ + +SG ++ I+ND+LD S+IE+G++ + P+ ++ + E Sbjct: 341 DLKPEQREQLIK----VSKSGRALVRIINDILDFSRIEAGRLAIERIPLRVEAVLLEVAD 396 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH 731 L A EK + + P +++ D + Q+ N++ NAI FT G I + H Sbjct: 397 LFSAQAEEKGLELFLDIEPETPLQVIGDPLRLTQVLNNLVGNAIKFTDHGEIHIGVRVAH 456 Query: 732 TSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + + L VRDTG+GM ++ + F Q +S G+GLGL +AK +V+ Sbjct: 457 YGDATLTLCINVRDTGIGMAPEQIGVLFQSFTQADSSTTRNYGGSGLGLTIAKKLVELMG 516 Query: 790 GKFYIFSTPAKGT 802 G+ + S +GT Sbjct: 517 GQITLDSAVGQGT 529 >gi|319793620|ref|YP_004155260.1| multi-sensor hybrid histidine kinase [Variovorax paradoxus EPS] gi|315596083|gb|ADU37149.1| multi-sensor hybrid histidine kinase [Variovorax paradoxus EPS] Length = 1167 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 125/234 (53%), Gaps = 7/234 (2%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP--RYIEYANYIDRSGNL 636 ++ S +KS+FLA +SHE+RTPL + + ++++ + P GN +++A I SGN Sbjct: 481 QRASRYKSEFLANMSHELRTPLNSALILAKLLGDN---PQGNLTLEQVKFAESIYSSGND 537 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP- 695 +L ++ND+LDI+K+E+GK+ + E VSL S A +K + R P Sbjct: 538 LLVLINDILDIAKVEAGKLEVVPEDVSLARLAESLESTFSPLAMQKNLSFRLELQPGAPA 597 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 ++ D + V+QI N+LSNA+ FT G++ + + T++ V D+G+G+ + E Sbjct: 598 SLVTDRQRVEQILKNLLSNALKFTDK-GEVALVVSATADGGAAFAVSDSGIGIDAQQHEL 656 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q + R GTGLGL +++ + G + S P KG+ + P Sbjct: 657 IFEAFRQADGTTSRRYGGTGLGLSISRDLTHLLGGTLTVQSEPGKGSTFVLQLP 710 >gi|331663725|ref|ZP_08364635.1| signal transduction histidine-protein kinase AtoS [Escherichia coli TA143] gi|284922211|emb|CBG35293.1| two-component system sensor kinase [Escherichia coli 042] gi|331059524|gb|EGI31501.1| signal transduction histidine-protein kinase AtoS [Escherichia coli TA143] Length = 608 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 92/398 (23%), Positives = 187/398 (46%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 229 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 288 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 289 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 341 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 342 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 396 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q + + EY + + + + + ++ LL+ S+ Sbjct: 397 AHEVRNPLTAIRGYVQILRQQTSDLI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 452 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 453 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELNPINADRELLKQVLLNIL 508 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 509 INAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFF------TTKAS 562 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 563 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 600 >gi|261251133|ref|ZP_05943707.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio orientalis CIP 102891] gi|260938006|gb|EEX93994.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio orientalis CIP 102891] Length = 852 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 125/231 (54%), Gaps = 11/231 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 ++DFLA++SHE+RTPL I+G S+++K++ + +PR +E+ + SG +L ++ND+ Sbjct: 474 RADFLAKMSHELRTPLNGILGVSQLLKSK----MDDPRDVEHMEVLCNSGEHLLAVLNDI 529 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---ILADL 701 LD SKIE GK ++ L E + + + + K + S +NI + +D Sbjct: 530 LDFSKIEHGKFHIEKTAFRLAELTNTVEKIFKPLCDNKG--VDFSVESNIESDSWVFSDQ 587 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR--DTGVGMTNYELEKAMKP 759 + QI N++SNA+ FT G ++ +E L+V DTG+G+ +L+ +P Sbjct: 588 IRINQILFNLVSNAVKFTHQGQVQVVVNALERDEATWLKVDVFDTGIGIEKSKLKDIFEP 647 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F Q ++ G+GLGL + +++V G+ I S A+GT + P+ Sbjct: 648 FVQAESTTTREYGGSGLGLAIVRSLVSIMDGEIEIESEVAQGTHFTVHVPI 698 >gi|194334707|ref|YP_002016567.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM 271] gi|194312525|gb|ACF46920.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM 271] Length = 991 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 118/222 (53%), Gaps = 8/222 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTPL +IG ++++ + ++A I SG +L +VND+ Sbjct: 340 KSQFLANMSHEIRTPLNGVIGMTDLLLESAL----DTEQRKFAQTISSSGRNLLRLVNDI 395 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703 LD SKIE+ K+ + + L + + E I+L A+EK + + + IP R+ D Sbjct: 396 LDFSKIEANKLEIEYLDFDLLDVLEEVIALFAYSAHEKNVDLIFLPDHTIPFRLKGDAAR 455 Query: 704 VKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPF 760 ++QI +N++SNA+ FT G + + S+ +R V DTG+G+ + +E PF Sbjct: 456 LQQILVNLVSNALKFTAEGEVVFSVDLERESDATATIRFTVSDTGIGIDSERIEAVFAPF 515 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 Q S + GTGLGL ++ + + ++ S+P G+ Sbjct: 516 TQADGSMIRKYGGTGLGLSISNQLARKMNSEIHVQSSPENGS 557 >gi|320159170|ref|YP_004191548.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O] gi|319934482|gb|ADV89345.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O] Length = 716 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 85/258 (32%), Positives = 125/258 (48%), Gaps = 11/258 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q+ + AK+ AE + KS FLA +SHE+RTPL AIIG S+ + R Sbjct: 215 QQQSLDMQEAKRAAEASAETKSKFLANISHEVRTPLNAIIGLSDT--DHYLNASEQIR-- 270 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE--- 681 EY + I RSG +L ++ND+LDISKI+SGK+ L SL + V + L Sbjct: 271 EYIDLIHRSGKHLLALMNDILDISKIDSGKLTLEQVEFSLKDIVDDTRVLFHERTQTPGV 330 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR- 740 + +I + I D + QI N+ SNAI FT G + T +L+ Sbjct: 331 ESFIITPQDCDMI--FYGDPLRLFQIISNLCSNAIKFTHEGQIKVAFTVQNRGPNSVLQI 388 Query: 741 -VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G++ +L+K F Q +S + GTGLGL + + + + G I S Sbjct: 389 CVSDTGIGISEAQLQKVFDEFVQADDSTTRKYGGTGLGLAICQKLTNLMQGTLRIESELN 448 Query: 800 KGTLIEIIFPLYDTSHPH 817 +GT + + L PH Sbjct: 449 RGTHVTLSLTLPLLHAPH 466 >gi|293368956|ref|ZP_06615557.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292635976|gb|EFF54467.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 1014 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 74/249 (29%), Positives = 130/249 (52%), Gaps = 10/249 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+ K+ + +L+ A+ AE+ + KS FLA +SHEIRTPL AI+GFS ++ + Sbjct: 629 ITTRKKMEMELTTARDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTD----EE 684 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 EY + I+ + L+L +++D+LD+SKIE+G + + + L++ ++E S +QL Sbjct: 685 EEKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLEFQYSNIDLNKMLNELTSSLQLKIK 744 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 +++ + A I + + Q+ +N++SNAI FT G I +E+ Sbjct: 745 SEKVQLTCHLAEKNCFIHTEKNRLSQLLINLISNAIKFTTEG--YIRFGYELRGKEIYFY 802 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG G+ + + F ++ + +Q GTGLGL + + +V+ G + S K Sbjct: 803 VSDTGCGIPKDKQKSIFGRFVKLNSFEQ----GTGLGLSICQTLVEHMGGTIGVDSEEGK 858 Query: 801 GTLIEIIFP 809 G+ P Sbjct: 859 GSTFWFTLP 867 >gi|238752982|ref|ZP_04614442.1| Histidine kinase [Yersinia rohdei ATCC 43380] gi|238708804|gb|EEQ01062.1| Histidine kinase [Yersinia rohdei ATCC 43380] Length = 1197 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 136/256 (53%), Gaps = 11/256 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPL 618 DIS+ K + +L A+ AE + KS FLA +SHE+RTP+ AI+G E+ I+N + P+ Sbjct: 627 DISQRKTVERELEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLELEIRNDQ--PV 684 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + +S ++ +++D++D +KIE+G++++H V + + ++ Q Sbjct: 685 DKDTLVT----VSKSAQSLMLLLDDIIDSAKIEAGQLSVHPAVVDFRQEIERMFTIYQPI 740 Query: 679 ANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736 A+E+ + + IP +L D+ V+Q+ N+L NA+ FT G + T ++E+ Sbjct: 741 ADERNLRFSAWVDDQIPDLLMIDMLRVRQVMGNLLGNALKFTEQGSVSVDITWEPTDEKH 800 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + + + DTG+G++ +PF Q + R G+GLGL + ++ G+ + Sbjct: 801 GVMNIDITDTGIGISPGAQATLFQPFSQANEGESPRFGGSGLGLWICHQLIHKMGGQITL 860 Query: 795 FSTPAKGTLIEIIFPL 810 S KGT + I PL Sbjct: 861 ESQLGKGTSLFITLPL 876 >gi|256392512|ref|YP_003114076.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM 44928] gi|256358738|gb|ACU72235.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM 44928] Length = 1482 Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 132/254 (51%), Gaps = 7/254 (2%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E +Q + L + S KS+F+A +SHE+RTPL +++ + ++ + L P Sbjct: 933 TEIEQARLTLEDRAQQLALASKVKSEFMANMSHELRTPLNSMLILARLLADNVDTNL-TP 991 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 R +++A I +G+ +L+++ND+LD+SKIE+G+M + E + + + Q A E Sbjct: 992 RQVDFAQTIHSAGSDLLELINDILDLSKIEAGRMEVQNESWPIADLAEGLAATFQPLAAE 1051 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----E 736 K + +R P + AD + V+QI N+LSNA+ FT + G++ + T Sbjct: 1052 KGLRLRVDVTAGAPATVTADSQRVQQILRNLLSNAVKFTDT-GEVTLRVTAARGAHGEPA 1110 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + V DTG+G+ +LE + F Q + + GTGLGL +++ + + + S Sbjct: 1111 IAFAVVDTGIGIAEDKLELIFEAFQQADGTTSRQYGGTGLGLSISRELTRLLSAELRVSS 1170 Query: 797 TPAKGTLIEIIFPL 810 P +G+ + P+ Sbjct: 1171 APGRGSTFTLQLPI 1184 >gi|329724647|gb|EGG61153.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Staphylococcus epidermidis VCU144] Length = 565 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 94/364 (25%), Positives = 185/364 (50%), Gaps = 27/364 (7%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 +I+ +L + LE + +I++ G I+ N A ++F P + + K + F++ + Sbjct: 223 KIQSNRLKTTLENIPSSVLMIDKHGEIVVANHAYYQVFN-PDQMVENKSYIGFIDDSIEK 281 Query: 508 -VMNHYLTEILSLDLRQTLE-KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 ++ + TE + + + LE I TK + + I+ K + +HDI+ + Sbjct: 282 LIIESFRTEKV---IYEQLEVAINNVHTKYFDVSCIPILTKSKKNLQGMVVVLHDITNLQ 338 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + +N + +F+A VSHE++TP+T+I GF+E + G + + ++ Sbjct: 339 KLENL--------------RREFVANVSHELKTPITSIKGFAETLIE---GAKNDEQSLD 381 Query: 626 -YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + N I + N + +V DLLD+S IE K L ++L E I +Q A KRI Sbjct: 382 MFLNIILKESNRIESLVTDLLDLSHIEQQK-ELEINYMNLSELAINIIDNLQTQAYNKRI 440 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 I++ ++ I A + Q+ N+LSNAI+++ ++I+ N+ V L ++D Sbjct: 441 KIQSEIEKDVI-IEAHENKIAQVITNLLSNAINYSSEDNKVIVRVYRNDNK-VYLEIQDY 498 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ + ++ + F ++ ++ GTGLGL + K +V+A+ G+ + S P KG++ Sbjct: 499 GIGISETDQKRIFERFYRVDKARSRDSGGTGLGLSITKHIVEAHNGRIDVKSEPGKGSIF 558 Query: 805 EIIF 808 +++F Sbjct: 559 KVLF 562 >gi|329848921|ref|ZP_08263949.1| sensory box protein [Asticcacaulis biprosthecum C19] gi|328843984|gb|EGF93553.1| sensory box protein [Asticcacaulis biprosthecum C19] Length = 639 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 100/381 (26%), Positives = 181/381 (47%), Gaps = 25/381 (6%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 D I KR + L +I++A+ D I +G+I S N + ++FGY ++ + + Sbjct: 123 DISIAKRAERL-AASLNAIVDASDDAIVSKTLDGVITSWNPSAVRIFGYTPDEAIGQHIG 181 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKI-TLGSTKEEKLLSLRIIIKKLPFSSCYSL- 556 + + P ++ T + + Q ++ TL K+ + L + + L + Sbjct: 182 LII---PPDRIDEEYTILGKIGAGQKVDHFETLRRHKDGSFVELAVTVSPLLDGRGRVMG 238 Query: 557 ---TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 I+E KQ + L + + K +FLA +SHE+RTP+ A+IG + ++ Sbjct: 239 ATKVARPIAEAKQTERALRESNR-------RKDEFLANMSHELRTPMNAVIGLAHILG-- 289 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 NP+ + + +SG+ +L ++N+LLD S++ES + L + + V ++ Sbjct: 290 -MSENLNPKEQQCVAMLKQSGDNLLGLINNLLDFSRLESDALELEVLEFNPADVVENSMI 348 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIIST 729 ++QL A EK + IR ++ NI R L D ++QI N+L+NA+ FT G + I Sbjct: 349 MIQLKAQEKDLPIRVTYDRNIKDRYLGDPARLQQILTNLLANAVKFTDEGQIDVAVRIKA 408 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 ++ + V DTG+G+ + E F Q S + G+GLGL + +A+ A Sbjct: 409 ERLNDTVLAFDVTDTGIGIAADKAEMIFDTFTQADASMTRKYGGSGLGLSICRALARAMN 468 Query: 790 GKFYIFSTPAKGT--LIEIIF 808 G + S P G+ +E+ F Sbjct: 469 GSISVVSRPGIGSTFTVELTF 489 >gi|257468274|ref|ZP_05632370.1| sensor protein barA [Fusobacterium ulcerans ATCC 49185] gi|317062552|ref|ZP_07927037.1| GAF sensor hybrid histidine kinase [Fusobacterium ulcerans ATCC 49185] gi|313688228|gb|EFS25063.1| GAF sensor hybrid histidine kinase [Fusobacterium ulcerans ATCC 49185] Length = 633 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 127/238 (53%), Gaps = 12/238 (5%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KNQRFGPLGNPRYIEYANYIDR 632 +K+IAE + K++FLA++SHE+RTPLT IIG+S ++ K PL + + I Sbjct: 154 SKEIAESANRAKNEFLAKISHEMRTPLTPIIGYSRLLLKEFPDSPLKDK-----LDIIHT 208 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG +L+ N+LLD SKIE+GK++L++E ++ E + A+ K I + F+ Sbjct: 209 SGVKLLNFTNELLDFSKIEAGKVDLNYESFNIKELFQDIYHEHSTLASSKNIKFKIEFSA 268 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 N I +D + +IA N++ NAI +T G ++ + + V D+G+G++ Sbjct: 269 NEVIIYSDKMKIYEIAKNLIHNAIKYTEKG--FVLCEVDIKDSYLSFNVYDSGIGISKTN 326 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + FGQI N Q G GLGL + K +V+ G + S GT ++ P+ Sbjct: 327 INYIFESFGQI-NKQ---SSGAGLGLSITKKLVEILNGTIEVESKVLIGTTFKVKIPI 380 >gi|297196443|ref|ZP_06913841.1| two-component system sensor kinase [Streptomyces pristinaespiralis ATCC 25486] gi|197722270|gb|EDY66178.1| two-component system sensor kinase [Streptomyces pristinaespiralis ATCC 25486] Length = 1166 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 78/265 (29%), Positives = 134/265 (50%), Gaps = 21/265 (7%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I + +QE +H +A K +KS+FLA +SHE+RTPL + + + P Sbjct: 576 EIEQARQELEDRAHQLSLASK---YKSEFLANMSHELRTPLNS---LLILAQLLAQNPTR 629 Query: 620 N--PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 N + +EYA I +G+ +L ++ND+LD+SK+E+GKM+++ E V+L + + + + Sbjct: 630 NLTAKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGKMDINPERVALAQLLDYVDATFRP 689 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG-----------GQI 725 +K + A +P +L D ++Q+ N++SNA+ FT G G++ Sbjct: 690 LTTQKSLDFTIHTAPGVPVDLLTDDSRLRQVLRNLISNAVKFTERGSVRVRIEPATDGEL 749 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 S H V RV DTG+G+ +LE F Q + + GTGLGL +++ + Sbjct: 750 PAS-VHRGGAVVAFRVEDTGIGIPEQQLEAIFGAFQQADGTTSRKYGGTGLGLSISREIA 808 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810 G STP +G+ + P+ Sbjct: 809 HLLGGALTARSTPGRGSTFTLYLPV 833 >gi|298480889|ref|ZP_06999084.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298272912|gb|EFI14478.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 623 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 126/232 (54%), Gaps = 12/232 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K EK+ L AK AE+ + KS FLA +SHEIRTPL +I+GFS+V+ G Sbjct: 379 KSEKD-LRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLA---VGGSTEEEQQ 434 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL--YANEK 682 Y I + +L+L ++ND+LD+S++E+ ++ L +E + + S+ ++ V ++E Sbjct: 435 SYYQIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQSSEN 494 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + L TSF + R++ D++ ++Q+ +N+LSNA FT G + + + + + V Sbjct: 495 QFLFTTSFESF--RMVTDVQRMQQVMINLLSNANKFTKRGKITLDFSVNEETQMAVFSVT 552 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 DTG G+ + + F ++ Q GTGLGL + K +V G +I Sbjct: 553 DTGCGIPKEKQGLVFERFEKLNEYAQ----GTGLGLSICKLIVHKWKGSIWI 600 >gi|284052262|ref|ZP_06382472.1| adenylate/guanylate cyclase [Arthrospira platensis str. Paraca] Length = 1066 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 123/238 (51%), Gaps = 14/238 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q+ +L A ++ K++F VSHE RTPLT +IG E + NQ+ + Sbjct: 550 RQQAERLLEADRL-------KTEFFQNVSHEFRTPLTLMIGPLETVVNQQ-----QDLSL 597 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + A R+ +L +VN LLD+ + ++G+M F P L E + + + Y + K+I Sbjct: 598 DQAKIALRNSRRLLRLVNQLLDLQRFDAGRMQPSFRPCDLVEFCQQTVESFKSYCDRKQI 657 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + T+ + P++ DL ++ N+LSNA+ FTP+ G I +S N L V+DT Sbjct: 658 NLVTNL-QSCPQLYLDLERFDKVLYNLLSNAMKFTPTDGTITVSLQPEGNY-CRLMVKDT 715 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G+ +L + F Q S EG+GLGL L K +V+ + G+ + S +GT Sbjct: 716 GIGIKQEQLPHLFERFRQAEGSANRSFEGSGLGLALVKELVELHHGRITVESEYGQGT 773 >gi|85711698|ref|ZP_01042755.1| Hybrid sensor histidine kinase [Idiomarina baltica OS145] gi|85694558|gb|EAQ32499.1| Hybrid sensor histidine kinase [Idiomarina baltica OS145] Length = 655 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 99/388 (25%), Positives = 187/388 (48%), Gaps = 41/388 (10%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 K+E E +L +L+AT G N + + S N +++FG+ E+I + P++ + + Sbjct: 144 KLETERNRLQLLLDATRLGTWEWNPQSNLTSFNDRWAQIFGWSREEIEQSPYS-WSSRLH 202 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL----------LSLRIIIKKLPFSSC-- 553 P + + + L+ IT + ++ L +I++ Sbjct: 203 PDDYDRVWRAV-----KDHLDGITPFYESQHRIRHRDGHYVYVLDRGRVIERDEHGKATR 257 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y+ T+ D++E KQ A+ A + +S K+ FLA +SHE+RTPL I+G V++N Sbjct: 258 YAGTVTDVTEQKQ-------AEINARRAASAKNVFLANMSHEVRTPLHGILGLVSVLENT 310 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + + + SG+ +L ++NDLLD+++ E G++ L+ + + L + S Sbjct: 311 AL----DTHQHQLLMTVKESGDHLLQMLNDLLDLTRSEEGQLKLNKDVLELARILQHIES 366 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII------ 726 + + EK + + +P RI +D + QI N+L+NA+ FT G ++ Sbjct: 367 MYRAPIEEKGVKFIIHHSQVLPERIFSDRARLIQILTNLLNNAVKFTEQGTIMLSIDWSV 426 Query: 727 --ISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 +TT T + E++++VRDTG G+ + ++ + F Q + G+GLGL + + Sbjct: 427 DPATTTQTQAQGELLIKVRDTGAGIRD--TQRIWQLFEQEHQGLSKKQSGSGLGLAIVRN 484 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLY 811 +V G+ + S P +GT + P+Y Sbjct: 485 LVQLLDGEIEVDSEPNRGTCFSLRLPMY 512 >gi|326798533|ref|YP_004316352.1| response regulator receiver sensor signal transduction histidine kinase [Sphingobacterium sp. 21] gi|326549297|gb|ADZ77682.1| response regulator receiver sensor signal transduction histidine kinase [Sphingobacterium sp. 21] Length = 369 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 77/256 (30%), Positives = 142/256 (55%), Gaps = 15/256 (5%) Query: 557 TMHDISE-WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 MH++ E KQE + H K + K K +F++ SHE++TPLT++ G+ ++++ Sbjct: 126 AMHEMQEALKQE---IEHRKMLENK----KDEFISIASHELKTPLTSVRGYLQLLERLPE 178 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 N ++ Y N + ++++DLLDISKIESGKM +F+PVS+++ +S + V Sbjct: 179 AK-NNEKFKTYLGKTSAQLNKLRELIDDLLDISKIESGKMKFNFQPVSIEKLISNTLENV 237 Query: 676 -QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 Q+Y + R ++I ILAD ++Q+ +N L+NAI ++P+ +I + T T + Sbjct: 238 SQMYP--EHAFKRIGQVDSI--ILADEMRLEQVLINYLTNAIKYSPNSKEIYLETALTED 293 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 ++ + VRD G+G+ + +L F ++ S + +G G+GL + K ++ + G+ + Sbjct: 294 NKIQIGVRDFGIGIPSDKLNHLFDKFYRVEES-SYKFQGLGMGLYICKEIIARHHGEHGV 352 Query: 795 FSTPAKGTLIEIIFPL 810 S +G+ PL Sbjct: 353 ESRLNEGSFFYFRLPL 368 >gi|295697074|ref|YP_003590312.1| multi-sensor signal transduction histidine kinase [Bacillus tusciae DSM 2912] gi|295412676|gb|ADG07168.1| multi-sensor signal transduction histidine kinase [Bacillus tusciae DSM 2912] Length = 622 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 77/279 (27%), Positives = 134/279 (48%), Gaps = 18/279 (6%) Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 GSTK+ R ++ S + +HD++E + +L +K +F+ Sbjct: 353 GSTKDVGRPEGRHFLRGSSLSGGAVVIIHDVTE----RRRLEQVRK----------EFVT 398 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 VSHE++TP+TAI G +E + + P ++E I R + +V DLLD+S++ Sbjct: 399 NVSHELKTPVTAICGLAETVVEEDLAPEERRHFLEL---IHREARRLEQLVRDLLDLSRL 455 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710 ES LH PV L E + + A + + + R D V+Q+ N Sbjct: 456 ESHLTTLHRRPVDLAEMARDVVQDYGYAAEQAGTDLYLDKEGDC-RAEVDPDRVRQVLSN 514 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 ++ NA+ +TP+GG++ + T EV + V DTGVG+ + ++ + F ++ ++ Sbjct: 515 LIDNALKYTPAGGRVDVRVLGTDPREVKVEVADTGVGIPPEDRDRVFERFYRVDKARART 574 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL + K +V + G+ + S KG+ + FP Sbjct: 575 TGGTGLGLAIVKHVVQLHGGRVGVESEVGKGSRFFVQFP 613 >gi|91778882|ref|YP_554090.1| multi-sensor hybrid histidine kinase [Burkholderia xenovorans LB400] gi|91691542|gb|ABE34740.1| multi-sensor hybrid histidine kinase [Burkholderia xenovorans LB400] Length = 1194 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 127/233 (54%), Gaps = 3/233 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ S +KS+FLA +SHE+RTPL + + +++++ R G L + YA I S + +L Sbjct: 483 EQSSRYKSEFLANMSHELRTPLNSSLILAKLLQQNRAGNL-TEEQVRYAETIHASNSDLL 541 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RI 697 ++ND+LD+SK+E+G++ + E VS+D + + + A +++ + P Sbjct: 542 VLINDILDLSKVEAGQVTVELETVSIDATLQALEEMFKPMAAARQLRLAFERLPGTPDTF 601 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 ++D + V QI N+LSNA+ FT G++ +S + + VRD+G+G+ +L+ Sbjct: 602 ISDGQRVTQILRNLLSNAVKFTEH-GEVALSVAPAEGGMLRIDVRDSGIGIAPDKLDMIF 660 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F Q S + G+GLGL +++ G+ + S KG++ + PL Sbjct: 661 EAFQQADGSTSRQYGGSGLGLSISREFSRLLGGRITVASEVGKGSVFTLWLPL 713 >gi|83815334|ref|YP_445007.1| sensory transduction histidine kinase [Salinibacter ruber DSM 13855] gi|83756728|gb|ABC44841.1| sensory transduction histidine kinase [Salinibacter ruber DSM 13855] Length = 668 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 100/372 (26%), Positives = 171/372 (45%), Gaps = 19/372 (5%) Query: 442 INKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + +R E+E + + EAT +GIA+ +G I+ N +++++ E ++ K T Sbjct: 294 VQRRTQELEESRARFRRLAEATLEGIALHETDGTIVDANASLAQMMDTDREALIGKDITA 353 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK-LPFSSCYSLTM 558 L + PSV H+ D E + G T + R + P C + Sbjct: 354 LL-ASAPSV--HWDRAEGRTDAPVETELVHAGGTTTPVEVETRTVTTGDEPVHVC---AV 407 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D+SE K+ ++++ AK+ AE+ + KS + +SHE+RTP+T I G++EVI + P Sbjct: 408 RDLSERKEWEDEMLRAKQEAEQAARLKSTLIHNMSHELRTPITTITGYAEVIMEEAEEP- 466 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + +A I SG + D + +LD+++IESG + + + VS+ V + + Sbjct: 467 ----HRSFALQIRESGRRLSDTLQSVLDMAQIESGTLEVTVQEVSVPGVVRDVVDRHAQA 522 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEEV 737 +K + + + D + +I N++ NA+ FT G Q+ + V Sbjct: 523 IEDKALTAELDVPEDCV-VATDRALLYRILNNLVQNAVKFTEKGRCQVWVEPVAFG---V 578 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + VRDTGVG+ +PF Q EGTGLGL L K +VD G + S Sbjct: 579 RIHVRDTGVGIDPAFRPHLFEPFKQESEGVAREYEGTGLGLALTKRLVDLLGGAIEVDSA 638 Query: 798 PAKGTLIEIIFP 809 +G+ + P Sbjct: 639 KGEGSAFTVELP 650 >gi|194336761|ref|YP_002018555.1| multi-sensor signal transduction histidine kinase [Pelodictyon phaeoclathratiforme BU-1] gi|194309238|gb|ACF43938.1| multi-sensor signal transduction histidine kinase [Pelodictyon phaeoclathratiforme BU-1] Length = 608 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 91/366 (24%), Positives = 177/366 (48%), Gaps = 23/366 (6%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 RK++ L ++ + I + + G I N A S++F + + KP L Sbjct: 241 RKLQHREEWLRAVFSGIREAIIVTDATGDITMVNPAASRMF--RINGSMFKPRP--LSHL 296 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFSSCYSLTMHDISE 563 + S + + S + E+++L +TK +++ + + + K + ++DI+ Sbjct: 297 SDSKLQELFARVHSTRVTLHKEELSLMTTKGARIMQISSMPLTKEELFTGTVFVLNDIT- 355 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 KL + +KI + DF+A VSHE+RTPLT I G++E + + G + P + Sbjct: 356 ------KLRNLEKI-------RRDFVASVSHELRTPLTVITGYTETLLD---GAMHEPEH 399 Query: 624 -IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + I + + +VND+LD+S+IESG++ F V L V +++ L++ ++K Sbjct: 400 ATAFLQTILLATEQLTALVNDVLDLSRIESGQIEYTFSAVDLKRMVQKSVDLLKPALDKK 459 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 +I + + +P + AD R + + N+L NAI + I T S++ + L + Sbjct: 460 QIRLDIHIPDGLPTVYADPRYLDIVVRNLLDNAIKYVDDQNGKIRITAFKSDDHLRLEIE 519 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D G+G+ +L + + F ++ ++ GTGLGL + K +V A+ G + S G+ Sbjct: 520 DNGIGIAKSDLGRIFERFYRVDKARSRERGGTGLGLAIVKHIVMAHKGNIDVRSRVNLGS 579 Query: 803 LIEIIF 808 + ++ Sbjct: 580 VFTLML 585 >gi|329937641|ref|ZP_08287160.1| two-component system sensory histidine kinase [Streptomyces griseoaurantiacus M045] gi|329303040|gb|EGG46928.1| two-component system sensory histidine kinase [Streptomyces griseoaurantiacus M045] Length = 1370 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 75/259 (28%), Positives = 134/259 (51%), Gaps = 12/259 (4%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E +Q + +L + S +KS+FLA +SHE+RTPL +++ ++++ L P+ Sbjct: 787 EIEQARQELETRAQELSLASRYKSEFLANMSHELRTPLNSLLILAQLLAQNPSHNL-TPK 845 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +EYA I +G+ +L ++ND+LD+SK+E+GKM++ E V L + + + ++K Sbjct: 846 QVEYAGIIHSAGSDLLQLINDILDLSKVEAGKMDISPERVPLRRLLDYVEATFRPMTSQK 905 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFT----------PSGGQIIISTTH 731 + S A +P +L D ++Q+ N+LSNA+ FT P+ + + H Sbjct: 906 SLEFAVSTAPGVPVDLLTDDSRLRQVLRNLLSNAVKFTERGRVELLIEPAQAHDVPVSVH 965 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 V V+DTG+G+ ++LE F Q + + GTGLGL + + + G Sbjct: 966 REGAVVAFHVKDTGIGIAAHQLETIFGAFQQADGTTSRKYGGTGLGLSITREIAHLLGGA 1025 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + STP +G+ + P+ Sbjct: 1026 VTVESTPGQGSTFTLYLPV 1044 >gi|220908096|ref|YP_002483407.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219864707|gb|ACL45046.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1099 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 78/257 (30%), Positives = 140/257 (54%), Gaps = 8/257 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M DI++ K + + AK+ AE + KS FLA +SHE+RTPL AI+GF+++++ Sbjct: 609 VMQDITQRKHTELAMQQAKEAAEAANQAKSAFLAHMSHELRTPLNAILGFAQLMERD--- 665 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L E + I+RSG +L ++ND+L++SKIE+G++ LH L + + + Sbjct: 666 TLLTTAQKESLSIINRSGEHLLGLINDVLEMSKIEAGRIVLHKAQFDLHRLLQTLQEMFR 725 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A K +++ + + ++P+ I++D ++Q+ +N+LSNA+ FT G I ++ + + Sbjct: 726 VRATAKGLVLTMNLSPSLPQLIISDEGKLRQVLINLLSNAVKFTDV-GHITLTANYADDP 784 Query: 736 E--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + + +V DTG G+ E +PF Q + EGTGLGL ++ V G+ Sbjct: 785 DPRLWFQVEDTGRGIAAAEQHHLFEPFVQTTTGANAQ-EGTGLGLTISHQFVQLLGGELR 843 Query: 794 IFSTPAKGTLIEIIFPL 810 + S +G+ P+ Sbjct: 844 VESEVNRGSTFSFDLPV 860 >gi|111225257|ref|YP_716051.1| hypothetical protein FRAAL5907 [Frankia alni ACN14a] gi|111152789|emb|CAJ64532.1| hypothetical protein FRAAL5907 [Frankia alni ACN14a] Length = 589 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 87/364 (23%), Positives = 178/364 (48%), Gaps = 22/364 (6%) Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 M ++L+A +D ++ +G + A G + I R P L + Sbjct: 1 MGPRTLLDALTDLAVVVGADGHVTDMGAAARAFLG---DRIPRDPQLRDLVEVVDPAFRA 57 Query: 512 YLTEILSLDLRQTLE-KITLGSTKEEKL-LSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569 L E ++ L Q+ + + ++G + + I++ P L D S+ + Sbjct: 58 ALGEAVTAALAQSGQWRGSVGLVDAAGTTVPHHVTIRRDPDGGLV-LLARDTSDQR---- 112 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 A++IAE +S K + +AR+ HE+RTPL A++GF+++++ + PL P + Sbjct: 113 ----AREIAENDSRAKDELIARLGHELRTPLNAMLGFAQLLELE---PL-TPDLHDDVER 164 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I G + +++D+LD++++ +G+ +++ PV++ + V + LV+ A ++ IR Sbjct: 165 IITGGRHMQALIDDVLDLARLRAGRGDINKGPVNVLDIVQGVVELVEPLAAQRS--IRRV 222 Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 +P + AD R + Q+ LN++ NA+ + GG + + + + + V D G G+ Sbjct: 223 IDPAVPLVADADRRRLWQVLLNLVGNALKYGREGGSVRVGIVPITGSRIRIEVEDDGAGL 282 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + +++ +PF ++ +++ EG+GLGL L+ A+V A G + S G++ I+ Sbjct: 283 SPRAIDRLFRPFERL-GAERSGIEGSGLGLALSHALVTAMGGVLTVASRYGVGSVFAIVL 341 Query: 809 PLYD 812 D Sbjct: 342 DAVD 345 >gi|302811550|ref|XP_002987464.1| hypothetical protein SELMODRAFT_426235 [Selaginella moellendorffii] gi|300144870|gb|EFJ11551.1| hypothetical protein SELMODRAFT_426235 [Selaginella moellendorffii] Length = 1209 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 110/213 (51%), Gaps = 19/213 (8%) Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 S+ +S DI+E Q L A+ AE+ + FLA +SHEIRTP+ A+IG +I Sbjct: 596 STEWSGIAWDITEQHQVVAALKEARDSAERAAQANRKFLAHMSHEIRTPMNAVIGMGALI 655 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 EYA+ I SG +L I+ND+LD SKIE+GKM L +P + + V E Sbjct: 656 LETDL----TDEQREYASTIRSSGEALLGIINDILDYSKIEAGKMELELQPTEILQCVEE 711 Query: 671 AISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG------- 722 + LV A K + + + ++++P + L D ++QI +N+LSNA+ FT G Sbjct: 712 SFDLVAPQAAVKGLELTYNVSDSVPSVLLGDSARIRQILVNLLSNAVKFTEKGYISVNVT 771 Query: 723 -------GQIIISTTHTSNEEVILRVRDTGVGM 748 G++ + S EV V D+G+G+ Sbjct: 772 GRQLEDPGRLPFKKFNRSLWEVEFSVADSGIGI 804 >gi|254440106|ref|ZP_05053600.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Octadecabacter antarcticus 307] gi|198255552|gb|EDY79866.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Octadecabacter antarcticus 307] Length = 803 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 93/382 (24%), Positives = 179/382 (46%), Gaps = 31/382 (8%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM--N 510 ++ S++ + DG+ + + +G IL + A +FG+ +L + N SV+ + Sbjct: 187 RMQSVMGTSLDGVVVCDADGKILEFSPAAEGIFGHSKAAVL--------DLNIASVIVPD 238 Query: 511 HYL----TEILSLDLRQTLEKITLGSTKEEKL--------LSLRIIIKKLPFSSCYSLTM 558 H L + + + + I G + E + L I K + + + Sbjct: 239 HLLHANEAGMERMRIGGDMRVIGKGRVRLEAKHKDGHIFPVELAIQNAKTDEGTIFISFL 298 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DIS + +L A+ A K++FL+ +SHEIRTPL ++G ++++ Sbjct: 299 RDISHEVMAEAELVTARDKALASEKMKTEFLSTMSHEIRTPLNGLLGNMNLLRDTEL--- 355 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI--SLVQ 676 N Y Y++ SG L+L V+D+LDI++ ++GK+N EPV++ E + + + Sbjct: 356 -NENQDRYVGYMETSGRLLLSHVSDVLDITRYDAGKLNTRIEPVNISELLQDIVDNQAST 414 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG--GQIIISTTHTSN 734 + NE L+ + +L+DL ++ + +N++ NA+ FT G I + Sbjct: 415 AFQNETS-LVWGWCGVKMDWVLSDLDRLQHVMMNLIGNAVKFTRRGKVSVTIENVGEGDA 473 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E+++++ DTG GM+ +++ F + GTGLGL +AK V+A G+ + Sbjct: 474 AELLVKIIDTGQGMSEDLIKRVFDDFVTGNTAYDRDVGGTGLGLSIAKRFVNALGGEIGV 533 Query: 795 FSTPAKGTLIEIIFPLYDTSHP 816 S +G+ + P+++ P Sbjct: 534 ESIVGEGSTFWVRLPVHEAEAP 555 >gi|322375300|ref|ZP_08049813.1| sensory box histidine kinase VicK [Streptococcus sp. C300] gi|321279563|gb|EFX56603.1| sensory box histidine kinase VicK [Streptococcus sp. C300] Length = 449 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 102/381 (26%), Positives = 181/381 (47%), Gaps = 38/381 (9%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R+ + +E E +L SIL +DG+ NR G I+ N K G ED+L K Sbjct: 83 RLTQENLEQESKRLNSILSYMTDGVLATNRRGQIIMINDMAKKQLGVQKEDVLNKSILEL 142 Query: 501 LEQNTPSVMNHYLTEI--LSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCY 554 L+ + +T+I L++D + + LSLR+ + ++ F S Sbjct: 143 LKIEDEYELRDLITQIPELTIDSQDV----------NGEYLSLRVRFALVRRESGFISGL 192 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 +HD +E EKE + F++ VSHE+RTPLT++ + E + Sbjct: 193 VAVLHDTTE--------------QEKEERERRLFVSNVSHELRTPLTSVKSYLEALDE-- 236 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 G L +P ++ N ++ +V DLL +S+I++ L E ++ ++ ++ Sbjct: 237 -GALYDPVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNATTQLDVELINFTAFITFILNR 295 Query: 675 ---VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 ++ EK+ + + N I D + Q+ NIL+NAI ++P GG+I +S Sbjct: 296 FDKMRAQDQEKKYELVRDYPINSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKITVSM-K 354 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 T+++++IL ++D G+G+ +L K F ++ ++ GTGLGL +AK ++ + G Sbjct: 355 TTDDQMILSIKDQGLGIPKQDLPKIFDRFYRVDRARSRAQGGTGLGLAIAKEIIKQHNGF 414 Query: 792 FYIFSTPAKGTLIEIIFPLYD 812 + S KG+ I+ P YD Sbjct: 415 IWAKSEYGKGSTFTIVLP-YD 434 >gi|156935733|ref|YP_001439649.1| aerobic respiration control sensor protein ArcB [Cronobacter sakazakii ATCC BAA-894] gi|156533987|gb|ABU78813.1| hypothetical protein ESA_03603 [Cronobacter sakazakii ATCC BAA-894] Length = 779 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 130/246 (52%), Gaps = 14/246 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+E K+ ++ L E+ S K+ F++ +SHE+RTPL I+G S ++ + Sbjct: 264 RDITERKRYQDAL-------ERASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL--- 313 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + +Y I S + +I ND++D+ KIE K+ L +PV +++ +L L Sbjct: 314 -SAEQEKYLKTIHVSAVTLGNIFNDIIDMDKIERRKVQLDNQPVDFTSFLADLENLSGLQ 372 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A +K + +P ++L D ++QI N++SNA+ FT GQ+ + ++ NE++ Sbjct: 373 AQQKGLRFVMEPVRPVPHKVLTDGTRLRQILWNLISNAVKFTQQ-GQVTVRVSYNENEQL 431 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKFYIFS 796 V D+G+G+ E +K + Q+ +SQ + GTG+GL +++ + + G + S Sbjct: 432 RFEVEDSGIGIPQEEQDKIFAMYYQVKDSQGGKPATGTGIGLAVSRRLAKSMGGDITVSS 491 Query: 797 TPAKGT 802 P +G+ Sbjct: 492 KPGQGS 497 >gi|149376372|ref|ZP_01894135.1| Signal transduction histidine kinase [Marinobacter algicola DG893] gi|149359386|gb|EDM47847.1| Signal transduction histidine kinase [Marinobacter algicola DG893] Length = 756 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 125/250 (50%), Gaps = 8/250 (3%) Query: 563 EWKQEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 E Q N+ L AK+ A + + +++FLA +SHEIRTPL ++G + Sbjct: 248 EALQRGNRALVRAKEDAVRRARARANFLASMSHEIRTPLNGVLGMLGLALEGNMEQAQRN 307 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 R N +G +L ++ND+LDISK+E+GK++L P SL V E +L A Sbjct: 308 RLEIALN----AGQSLLGLLNDILDISKVEAGKLSLENIPFSLRNLVEECATLHAQQARR 363 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K I + +P L D +QI N+LSNAI FT SG I +T + N V + Sbjct: 364 KNIDVVADIDCELPETFLGDPTRTRQILNNLLSNAIKFTESGCVRIRATRYNGN--VRID 421 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+GM+ L + PF Q + GTGLGL L + +V+ G+ + S + Sbjct: 422 VIDTGIGMSKEGLHRIFSPFSQADSDTTRLYGGTGLGLTLCRQLVERMHGQILVDSEEHE 481 Query: 801 GTLIEIIFPL 810 GT + PL Sbjct: 482 GTHFTVNLPL 491 >gi|121585528|ref|ZP_01675324.1| tmao reductase sytem sensor tors [Vibrio cholerae 2740-80] gi|121725847|ref|ZP_01679147.1| sensor protein TorS [Vibrio cholerae V52] gi|147672464|ref|YP_001215487.1| sensor protein TorS [Vibrio cholerae O395] gi|153818582|ref|ZP_01971249.1| sensor protein TorS [Vibrio cholerae NCTC 8457] gi|262168553|ref|ZP_06036249.1| sensor protein TorS [Vibrio cholerae RC27] gi|121550145|gb|EAX60159.1| tmao reductase sytem sensor tors [Vibrio cholerae 2740-80] gi|121631612|gb|EAX63980.1| sensor protein TorS [Vibrio cholerae V52] gi|126510865|gb|EAZ73459.1| sensor protein TorS [Vibrio cholerae NCTC 8457] gi|146314847|gb|ABQ19387.1| sensor protein TorS [Vibrio cholerae O395] gi|262023082|gb|EEY41787.1| sensor protein TorS [Vibrio cholerae RC27] Length = 984 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 80/255 (31%), Positives = 126/255 (49%), Gaps = 10/255 (3%) Query: 561 ISEWKQEKNK--LSHAK--KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 +SE + N+ L+HAK + AE+ S KS FLA +SHEIRTP+ ++G + ++++ Sbjct: 442 LSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLT 501 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 Y I+RSG +L I+ND+LD SKIE+G + +H L VSE L+Q Sbjct: 502 STQQ----HYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVSETHELMQ 557 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A EK I + ++ + D + Q+ N++ N I FT G I + Sbjct: 558 SRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKFTDQGEVRIRIRLAPDGQ 617 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V D+G+G+ E F Q ++ G GTGLGL +++ +V A G+ + Sbjct: 618 GIRFAVEDSGIGIAEEEQATLFDAFTQADAGRRKLG-GTGLGLAISRKLVQAMGGELQLA 676 Query: 796 STPAKGTLIEIIFPL 810 S +G+ PL Sbjct: 677 SQLGQGSCFWFTLPL 691 >gi|297585394|ref|YP_003701174.1| response regulator receiver [Bacillus selenitireducens MLS10] gi|297143851|gb|ADI00609.1| response regulator receiver [Bacillus selenitireducens MLS10] Length = 1104 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 122/237 (51%), Gaps = 7/237 (2%) Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP--RYIEYANYIDRSGNLV 637 K + K++FLA SHE+RTPL +IG +E +K G G P + + I SGN + Sbjct: 430 KADALKNEFLAVTSHELRTPLYGMIGIAESLKE---GAAGEPPEDMKDQLDTIVASGNRL 486 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 ++ND+LD SK++ G + L + V + S ++ K +L++ +++PR+ Sbjct: 487 AHLINDILDFSKLKHGSLRLDVKAVDVKHLASFVTAVTGPLIAGKPVLMQIDMPDDLPRV 546 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 AD ++Q+ N++ NAI FT G I + + + V +RV DTG+G+ E + Sbjct: 547 KADPNRIQQVLYNLVGNAIKFTEKGR--ITLSAKAAGKFVTVRVSDTGIGIPKQERDAIF 604 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 PF Q+ R +GTG+GL + K +++ + + + + +G P++ S Sbjct: 605 DPFVQVDQLSDHRPDGTGIGLTITKQLLELHDSRLEVDTDTEEGASFFFALPIHQES 661 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/254 (19%), Positives = 109/254 (42%), Gaps = 24/254 (9%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L+ A K + L+ ++HE+ TP+ I + + ++ + +P Y + Sbjct: 844 LTRANKSLVAAEDARKQLLSNIAHELGTPVALIHSYMQSVRAGLIA-MDDPYY---HQQV 899 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 ++ ++ +++DL D+++ E L E S+ + +++ + + Sbjct: 900 EKKIQILNRLISDLFDLARFEQDHKILQRETFSVSDWLTKVDETCRFEVTQHHRRYEG-- 957 Query: 691 ANNIPRILA------------DLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNE-E 736 P I A D+ + Q+ N++ N++ FT G I I+ NE + Sbjct: 958 ----PEIGAFEPYKREWYCHVDVERMDQVLSNLIVNSVKFTTEDDGTIRITAEWDLNERK 1013 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +++ + D G G+ + F + + + +G+GLGL + K +++++ G+ + S Sbjct: 1014 LVIGIHDNGAGIPKEAVPFMFDRFYRAGDHSGFKPKGSGLGLAIVKQIIESHGGEVDVTS 1073 Query: 797 TPAKGTLIEIIFPL 810 KGT I P+ Sbjct: 1074 EQGKGTSFFITVPM 1087 >gi|166712854|ref|ZP_02244061.1| histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 916 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 125/241 (51%), Gaps = 8/241 (3%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 H +++AE+ S K+ FLA + HE+RTP+T ++G SE++ + Y I R Sbjct: 539 HKQEVAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLKTSL----DITQRSYTESIRR 594 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--RILIRTSF 690 +G +L +VND LD+++IESG++ L +P S+ + ++E +L+ A ++ R + Sbjct: 595 AGAHLLRLVNDALDLARIESGRLELDLQPFSVRQLLAELEALMAPLAQDRGLRFSLEIGL 654 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 +I D ++QI LN+L+NAI FT G + TT S + + V DTG G+ Sbjct: 655 LGDIT-ASGDSTRIRQILLNLLNNAIKFTERGVVGLKLTTLGSYQGLRFEVADTGPGINA 713 Query: 751 YELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + + F Q ++ R G+GLGL + + + A G + S GT + P Sbjct: 714 EQKARLFQRFEQGDGARTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTRFVVDLP 773 Query: 810 L 810 L Sbjct: 774 L 774 >gi|170721955|ref|YP_001749643.1| Hpt sensor hybrid histidine kinase [Pseudomonas putida W619] gi|169759958|gb|ACA73274.1| Hpt sensor hybrid histidine kinase [Pseudomonas putida W619] Length = 1091 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 86/255 (33%), Positives = 133/255 (52%), Gaps = 17/255 (6%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPLGNPRYIEYAN 628 +L AK AE+ S KS FLA +SHEIRTP+ A+IG E+ +++ R G + + ++ A+ Sbjct: 585 QLRQAKDDAERASHTKSTFLATMSHEIRTPMNAVIGLLELALEDSRKGRC-DTQALQTAH 643 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 D + +L L ++ D+LDIS+IESG M L E L E V A+ + A K + + Sbjct: 644 --DSAVDL-LGLIGDILDISRIESGHMTLQPEATDLVELVRSALRVFDGNARVKGLRLHC 700 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS-----TTHTSNEEVILRVRD 743 +LAD +KQI N+LSNAI FT G++ +S T S+ +V L V D Sbjct: 701 LLPEGPVWVLADALRIKQILSNLLSNAIKFTDR-GEVHVSLSVEPVTAGSSVQVQLCVHD 759 Query: 744 TGVGMTNYELEKAMKPFGQI--PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 TG+G+ + + + F Q P ++Q G GLGL +++ + + G + S G Sbjct: 760 TGIGIGSADQARLFSAFAQADGPRARQ----GAGLGLVISRTLANLMGGALNLQSVEGVG 815 Query: 802 TLIEIIFPLYDTSHP 816 T + + L P Sbjct: 816 TKVSVELQLPTCHAP 830 >gi|308271052|emb|CBX27662.1| hypothetical protein N47_H24840 [uncultured Desulfobacterium sp.] Length = 1019 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 75/259 (28%), Positives = 131/259 (50%), Gaps = 13/259 (5%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ K + + E S +KSDFL +SHE+RTPL +I+ S ++ + G L + + Sbjct: 308 ELEEAKRLIEQKARDLELASKYKSDFLTNMSHELRTPLNSILILSRLLSENKKGNL-DQK 366 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 IE+A I+ +G +L ++N+ LD++K+E+GKM FE + + + A EK Sbjct: 367 NIEFAQTINGAGADLLKLINEALDLAKVEAGKMECSFEQLEIADLTDTLKRYFMAIAEEK 426 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG----------GQIIISTTH 731 ++ + + IP ++D + V+QI N+LSNA FT G + ++ Sbjct: 427 GLIFTINQKDGIPSGFVSDRQKVEQIIKNLLSNAFKFTEKGTISLDVFRPDNTVDLTLYG 486 Query: 732 TSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 N+ I V DTG+G+ + + + F Q + + GTGLGL +++ M G Sbjct: 487 LVNKNTIAFSVSDTGIGIPEDKKQSIFEAFQQADGTTSRKYGGTGLGLTISRKMAKLLGG 546 Query: 791 KFYIFSTPAKGTLIEIIFP 809 + + +T KGT+ + P Sbjct: 547 EITLETTEGKGTVFTLYIP 565 >gi|304407980|ref|ZP_07389630.1| multi-sensor hybrid histidine kinase [Paenibacillus curdlanolyticus YK9] gi|304342999|gb|EFM08843.1| multi-sensor hybrid histidine kinase [Paenibacillus curdlanolyticus YK9] Length = 880 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 124/236 (52%), Gaps = 8/236 (3%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK AE+ S K +FLA +SHEIRTP+ IIG + +++ + +Y+N + Sbjct: 222 LVEAKLSAEEASRAKGEFLANMSHEIRTPMNGIIGLNHLLRQTEL----TDQQQDYSNKM 277 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 S N ++ I+ND+LD SKIE+ K+ L L E + ++V + A EK + S Sbjct: 278 LLSANNLITIINDILDYSKIEANKIVLEQIDFDLFEVLHNVSNIVNVKAYEKGLHFHFSV 337 Query: 691 ANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGV 746 + +P++L D Q+ +N+L+NA+ FT G + I ++ V+LR V DTG+ Sbjct: 338 HHEVPQMLVGDPHRFAQVLVNLLNNAVKFTERGEVSVAIDQLPSTGSSVLLRCAVSDTGI 397 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+T + K + F Q S + GTGLGL ++K +V G + S G+ Sbjct: 398 GLTREQQSKLFRHFTQADMSTTRKYGGTGLGLVISKELVQLMGGTLTVKSEQGNGS 453 >gi|227540473|ref|ZP_03970522.1| two-component system sensor histidine kinase/response [Sphingobacterium spiritivorum ATCC 33300] gi|227239797|gb|EEI89812.1| two-component system sensor histidine kinase/response [Sphingobacterium spiritivorum ATCC 33300] Length = 1268 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 82/251 (32%), Positives = 123/251 (49%), Gaps = 19/251 (7%) Query: 566 QEKNKLSHAKKIAEKESS---HKSDFLARVSHEIRTPLTAIIG----FSEVIKNQRFGPL 618 Q N+L + +K A+ K DF ++SHEIRTPLT I+ E I+ + G Sbjct: 812 QLSNELLYQQKYAKDLDGLYQAKLDFFTKISHEIRTPLTLIVAPLDKLMEQIREKETGSY 871 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 Y + I ++ + +L +VN+LLD KIE GK+ L + V L + E + L Q Sbjct: 872 -------YLSIIKKNVDRLLLMVNELLDFRKIEEGKVELKLQQVMLLPFIQEQVELFQEA 924 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + I P + D ++ N+L NAI FTP+GG I I +V Sbjct: 925 FHTGEIGFTMKCTVTEP-VYLDPYQFSKVMSNLLVNAIKFTPAGGSISI-VAERQQSQVA 982 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + + DTG+G+ +L K F Q S Q+R +G G+GL L KA+V+ + G + S+ Sbjct: 983 VVIADTGMGIAEEDLGKVFANFYQ---SDQVREKGWGIGLSLCKAIVEQHGGTIRVQSSA 1039 Query: 799 AKGTLIEIIFP 809 KGT I+ P Sbjct: 1040 QKGTAFTILLP 1050 >gi|226199333|ref|ZP_03794893.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei Pakistan 9] gi|225928740|gb|EEH24767.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei Pakistan 9] Length = 769 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 100/380 (26%), Positives = 172/380 (45%), Gaps = 23/380 (6%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +R+ L ++EA+ D I + I S N A ++FGY ++ + V + Sbjct: 245 ERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGY--DEHAARGCDVAMLI 302 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSC--YSLT 557 + NH L E + D+R+ +E + + +++ +R + P +C SLT Sbjct: 303 APRWLRNHPLPESVP-DMREPIENVDVLCVRQDGG-RMRATMSASPVFDERDACIALSLT 360 Query: 558 MHDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + D E ++ + A++ A+ + K + LA VSHE+RTPL I G+ EV+ Sbjct: 361 LRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVL 420 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +N P+ + + IDRS + +V D+LD S + +GK+ L PV L V++ Sbjct: 421 RN----PVDGALQQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVND 476 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + A I + A + D ++Q+ N+LSNA FTP GG++ +S Sbjct: 477 VTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLE 536 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + L V DTG G++ L + F + + G GLGL + + + + + G Sbjct: 537 R-HDAQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGG 595 Query: 791 KFYIFSTPA-KGTLIEIIFP 809 K S +GT I P Sbjct: 596 KVEAASAGKNRGTTFAITLP 615 >gi|218705750|ref|YP_002413269.1| sensory histidine kinase AtoS [Escherichia coli UMN026] gi|218432847|emb|CAR13741.1| sensory histidine kinase in two-component regulatory system with AtoC [Escherichia coli UMN026] Length = 608 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 92/398 (23%), Positives = 187/398 (46%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 229 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 288 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 289 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 341 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 342 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 396 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q + + EY + + + + + ++ LL+ S+ Sbjct: 397 AHEVRNPLTAIRGYVQILRQQTSDLI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 452 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 453 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELNPINADRELLKQVLLNIL 508 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 509 INAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFF------TTKAS 562 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 563 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 600 >gi|163743847|ref|ZP_02151219.1| sensory box sensor histidine kinase/response regulator [Phaeobacter gallaeciensis 2.10] gi|161382885|gb|EDQ07282.1| sensory box sensor histidine kinase/response regulator [Phaeobacter gallaeciensis 2.10] Length = 842 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 128/243 (52%), Gaps = 14/243 (5%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L++AK+ AEK K++FLA +SHEIRTP+ IIG S+++ PL + + + Sbjct: 447 QLTYAKQAAEKADQAKTEFLANMSHEIRTPMNGIIGMSDILAES---PLSAEQE-QCVDT 502 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I S +L I+ND+LD+S++E+GKM + +L + V A+ +++ EK + + Sbjct: 503 IRDSSVALLKIINDILDLSRLEAGKMEISTVDFNLRKCVDGAVDVLRPKLREKGLTFTQT 562 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EVILRVRD 743 FA +P ++ D ++QI +N+LSNA+ FT G + H S + + + V D Sbjct: 563 FARELPEQVHGDDGRLRQILVNLLSNAVKFTQYGS----VSLHVSRDVKDPYHLFIDVVD 618 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G++ + + F Q + GTGLGL ++ + G + S +G+ Sbjct: 619 TGIGISEDQARHVFERFSQADAATTRHYGGTGLGLTISNILAQRMGGGISLNSNEGQGSC 678 Query: 804 IEI 806 + Sbjct: 679 FRL 681 >gi|153800850|ref|ZP_01955436.1| tmao reductase sytem sensor tors [Vibrio cholerae MZO-3] gi|124123560|gb|EAY42303.1| tmao reductase sytem sensor tors [Vibrio cholerae MZO-3] Length = 649 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 79/255 (30%), Positives = 125/255 (49%), Gaps = 10/255 (3%) Query: 561 ISEWKQEKNK--LSHAK--KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 +SE + N+ L+HAK + AE+ S KS FLA +SHEIRTP+ ++G + ++++ Sbjct: 107 LSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTL- 165 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 Y I+RSG +L I+ND+LD SKIE+G + +H L V E L+Q Sbjct: 166 ---TATQQHYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQ 222 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A EK I + ++ + D + Q+ N++ N I FT G I + Sbjct: 223 SRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRIRLAPDGQ 282 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V D+G+G+ E F Q ++ G GTGLGL +++ +V A G+ + Sbjct: 283 GIRFAVEDSGIGIAEEEQATLFDAFTQADAGRRKLG-GTGLGLAISRKLVQAMGGELQLA 341 Query: 796 STPAKGTLIEIIFPL 810 S +G+ PL Sbjct: 342 SQLGQGSCFGFTLPL 356 >gi|82702620|ref|YP_412186.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] gi|82410685|gb|ABB74794.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] Length = 696 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 115/230 (50%), Gaps = 10/230 (4%) Query: 566 QEKNKLSHAKKIAEKESSH----KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +EK +L ++IA E+ K DFLA +SHE+RTPL AI+G+S++I G + N Sbjct: 296 EEKKQLLENERIARSEAERANRIKDDFLATLSHELRTPLNAILGWSQLILQ---GTMKNE 352 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 I+R+ ++ DLL++S I S K+ L + L A+ V A Sbjct: 353 DIQRGLETIERNARAQNKLIEDLLEMSSIISNKIRLDMQEWDLGAIAEAAVESVAPAAEA 412 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVILR 740 K I IR + R+L D ++QI N+LSNA+ FTP GG + +I S VI Sbjct: 413 KGICIRRTIDATAGRVLGDNHRLQQIIWNLLSNAVKFTPDGGTVEVIVERAASQLRVI-- 470 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 V+D+GVG+ L F Q +S G GLGL + K +V + G Sbjct: 471 VKDSGVGIKPEFLAYVFDRFRQADSSLTRNHGGLGLGLAIVKQLVGLHGG 520 >gi|27367329|ref|NP_762856.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6] gi|27358898|gb|AAO07846.1|AE016811_87 Signal transduction histidine kinase [Vibrio vulnificus CMCP6] Length = 716 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 85/258 (32%), Positives = 125/258 (48%), Gaps = 11/258 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q+ + AK+ AE + KS FLA +SHE+RTPL AIIG S+ + R Sbjct: 215 QQQSLDMQEAKRAAEASAETKSKFLANISHEVRTPLNAIIGLSDT--DHYLNASEQIR-- 270 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE--- 681 EY + I RSG +L ++ND+LDISKI+SGK+ L SL + V + L Sbjct: 271 EYIDLIHRSGKHLLALMNDILDISKIDSGKLTLEQVEFSLKDIVDDTRVLFHERTQTPGV 330 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR- 740 + +I + I D + QI N+ SNAI FT G + T +L+ Sbjct: 331 ESFIITPQDCDMI--FYGDPLRLFQIISNLCSNAIKFTHEGQIKVAFTVQNRGPNSVLQI 388 Query: 741 -VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G++ +L+K F Q +S + GTGLGL + + + + G I S Sbjct: 389 CVSDTGIGISEAQLQKVFDEFVQADDSTTRKYGGTGLGLAICQKLTNLMQGTLRIESELN 448 Query: 800 KGTLIEIIFPLYDTSHPH 817 +GT + + L PH Sbjct: 449 RGTHVTLSLTLPLLHAPH 466 >gi|193212325|ref|YP_001998278.1| multi-sensor signal transduction histidine kinase [Chlorobaculum parvum NCIB 8327] gi|193085802|gb|ACF11078.1| multi-sensor signal transduction histidine kinase [Chlorobaculum parvum NCIB 8327] Length = 596 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 128/228 (56%), Gaps = 6/228 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY-IEYANYIDRSGNLVLDIVND 643 + DF++ VSHE+RTPL +I G++E + G + +P + + I + + ++ND Sbjct: 364 RRDFVSSVSHELRTPLASIKGYTETLLE---GAVNDPEHATAFLRIIQQESEQLTALIND 420 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 +LD+S+IESGK+ +FEPV + A+ + ++L + A+ K + I + + +P +LAD Sbjct: 421 VLDLSRIESGKIIYNFEPVDVKPALEKTMALFEPAASRKGVRIELNVPDGLPPVLADRNY 480 Query: 704 VKQIALNILSNAIHFTPSG-GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 + N++ NA+ + + G++ +S +++ V + V D G+G+ +L++ + F + Sbjct: 481 FDIVMRNLIDNAVKYVDANRGRVRVSACK-ADQNVAIEVSDNGIGIPQADLKRIFERFYR 539 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + ++ GTGLGL + K ++ A+ G + S G+ + FP+ Sbjct: 540 VDKARSRELAGTGLGLSIVKHILLAHKGNVEVRSKTNSGSTFTVTFPI 587 >gi|168700922|ref|ZP_02733199.1| multi-sensor signal transduction histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 723 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 82/274 (29%), Positives = 128/274 (46%), Gaps = 12/274 (4%) Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 K P+ +C H + E L+ E E+ + DFLA V+HE+R P+ I Sbjct: 459 KSEPWGACDRDAAHTLHE--MVLTALARRGAGLEAEARRRDDFLAAVAHELRNPIAPIQN 516 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 ++++ R GN A+ I+R + IV DLLD S+ GK+ + P+ L Sbjct: 517 AAQLV---RMSAGGNAVAARAADMIERQTGALRRIVEDLLDASRAGQGKLRVDLVPLDLA 573 Query: 666 EAVSEAI--SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 V A+ + L AN + RT A R+ D ++Q+ N+L+NA FT GG Sbjct: 574 PLVRAAVEDARAALEANGIALAARTPAAPV--RVRGDAVRLRQVISNLLTNAGKFTDRGG 631 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 ++ ++ + L V DTG+G+ +L + + F Q S + EG GLGL L ++ Sbjct: 632 RVTVALGADATA-ASLSVADTGIGIAAADLRRVFQAFAQSEGSLERSREGLGLGLALVRS 690 Query: 784 MVDANMGKFYIFS-TPAKGTLIEIIFPLYDTSHP 816 + + + G S P GT + PL DTS P Sbjct: 691 IAELHGGSASAASDGPGHGTTFTVRLPL-DTSAP 723 >gi|119476448|ref|ZP_01616799.1| two-component system sensory histidine kinase [marine gamma proteobacterium HTCC2143] gi|119450312|gb|EAW31547.1| two-component system sensory histidine kinase [marine gamma proteobacterium HTCC2143] Length = 458 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 124/252 (49%), Gaps = 5/252 (1%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP--LGN 620 + +Q + K+ A+ ++ KSDFLA +SHE+RTPL AIIG+SE++ + P + N Sbjct: 202 KLRQAMADVKKLKEDADFANNAKSDFLANMSHELRTPLNAIIGYSEMML-EEIDPDDVNN 260 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 I +G +L+ +ND+LD SKIESG M L+ E + +SE I+ + A Sbjct: 261 EGQQSDLKNILIAGKHLLNQINDVLDFSKIESGNMTLYAELFDSNAILSEVIATMTPLAG 320 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--VI 738 ++ + S IP + D + I N+LSNA F+ I + S I Sbjct: 321 QRDNTLIYSGDQKIPLLKNDATKFRHIFTNLLSNACKFSEQNAIQISARLGPSGHSTMAI 380 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V D+G+GMT +L + F Q +S + GTGLGL L K D GK + S Sbjct: 381 FTVSDSGIGMTEKQLSIIFEAFKQADSSTTRQYGGTGLGLTLCKQYCDLMGGKIQVNSEV 440 Query: 799 AKGTLIEIIFPL 810 GT + PL Sbjct: 441 GGGTTFTVHMPL 452 >gi|226943663|ref|YP_002798736.1| membrane sensor hybrid histidine protein kinase [Azotobacter vinelandii DJ] gi|226718590|gb|ACO77761.1| membrane sensor hybrid histidine protein kinase [Azotobacter vinelandii DJ] Length = 772 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 128/252 (50%), Gaps = 12/252 (4%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 + Q L A+ A + + +S FLA +SHEIRTPL ++G + + GPL N Sbjct: 267 ARLTQSNRDLEAARSTALEMAQARSAFLANMSHEIRTPLNGLLGMLSLSLD---GPLSNE 323 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN- 680 + + + SG +++ ++ND+LD+SK ESG+M L P L + +A +L+ A Sbjct: 324 QR-QQLSVAHASGKVLVRLLNDVLDLSKFESGQMELERIPFDLGALIEDATALLSQSAAP 382 Query: 681 --EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 E LI +++ D V+QIA N++SNA+ FT G + S+E V Sbjct: 383 GVELTCLIDPGLPT---QVIGDPTRVRQIASNLISNALKFTRFGR--VDVCLQASSENVR 437 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 L +RDTG+G++ + +PF Q + + GTGLGL L + + +A G+ FS Sbjct: 438 LVIRDTGIGISREAQTRIFQPFAQATANITRQYGGTGLGLALTRKLCEAMQGQLTFFSKE 497 Query: 799 AKGTLIEIIFPL 810 G+ + PL Sbjct: 498 GLGSTFTVELPL 509 >gi|313204634|ref|YP_004043291.1| multi-sensor hybrid histidine kinase [Paludibacter propionicigenes WB4] gi|312443950|gb|ADQ80306.1| multi-sensor hybrid histidine kinase [Paludibacter propionicigenes WB4] Length = 1000 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 75/245 (30%), Positives = 132/245 (53%), Gaps = 6/245 (2%) Query: 567 EKNKLSHAKKIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 E+N+ +KI E+S K++FL+ +SHE+RTPL ++I S V+ ++R + Sbjct: 467 EQNRELEMQKIQLHEASRLKTNFLSNMSHELRTPLNSVIALSGVL-SRRLNEKIPADELS 525 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI- 684 Y I+R+G +L ++ND+LDIS+IESG+ + ++E V++ +S+++ A +K I Sbjct: 526 YLEVIERNGKHLLSLINDILDISRIESGREEVDVSKFIVEELVTDIVSIIKPQAQQKNID 585 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 LI+ + + +I I +D+ + I N++ NA+ FT G + I T N + + V DT Sbjct: 586 LIKATISKDIV-ITSDIDKCRHILQNLVGNAVKFTEKGS-VSIDVVKTQN-AIEISVTDT 642 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ ++ F Q + GTGLGL +AK + G + S +G+ Sbjct: 643 GIGIAESNIDHIFDEFRQADGGTSRKFGGTGLGLAIAKKYANLLGGTVTVKSILGEGSTF 702 Query: 805 EIIFP 809 + P Sbjct: 703 TLSLP 707 >gi|289679769|ref|ZP_06500659.1| PAS [Pseudomonas syringae pv. syringae FF5] Length = 539 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 103/340 (30%), Positives = 178/340 (52%), Gaps = 30/340 (8%) Query: 398 ARLHTIQWNREN-SLAMTFIPFEKANQFPEN--MPQNGIEPEDVDTRINKRKMEIE--VM 452 AR+H +Q N + +L +P Q PE + Q G + + +R+ + Sbjct: 215 ARVHQVQRNAQRLALGHPLLP-----QPPEKDEIGQLGTRLVEAGQLLAERERALRDNEE 269 Query: 453 QLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMN 510 +L I+E D GI ++R G I + N ++ GY ++I+ + F+VF L+Q P + Sbjct: 270 RLRLIIEGVKDYGIFALDRNGYITTWNAGAERIKGYTEQEIIGQHFSVFYLQQECPQHPD 329 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQ 566 L E +++ R T E K+ ++I S+ +S DIS+ + Sbjct: 330 MALHEA-TVNGRYTEEGWR--QRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDRRV 386 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + L A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ P I Sbjct: 387 AEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMD--SPASQRPQI-- 442 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 +I R+G +L ++N++LDI++IE+G ++L EPVSL + EA+ LV A + I + Sbjct: 443 -GHILRAGQHLLKLINEVLDIARIEAGHVSLILEPVSLSSVLEEALVLVSPMAADANIEL 501 Query: 687 RTSFANNIP---RILADLRSVKQIALNILSNAIHFT-PSG 722 + N+P ++AD + + Q+ LN+LSNAI + P+G Sbjct: 502 KP--LPNLPDEIGVVADRQRLIQVLLNLLSNAIKYNRPAG 539 >gi|254182521|ref|ZP_04889115.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1655] gi|184213056|gb|EDU10099.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1655] Length = 818 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 100/380 (26%), Positives = 172/380 (45%), Gaps = 23/380 (6%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +R+ L ++EA+ D I + I S N A ++FGY ++ + V + Sbjct: 292 ERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGY--DEHAARGCDVAMLI 349 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSC--YSLT 557 + NH L E + D+R+ +E + + +++ +R + P +C SLT Sbjct: 350 APRWLRNHPLPESVP-DMREPIENVDVLCVRQDGG-RMRATMSASPVFDERDACIALSLT 407 Query: 558 MHDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + D E ++ + A++ A+ + K + LA VSHE+RTPL I G+ EV+ Sbjct: 408 LRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVL 467 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +N P+ + + IDRS + +V D+LD S + +GK+ L PV L V++ Sbjct: 468 RN----PVDGALQQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVND 523 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + A I + A + D ++Q+ N+LSNA FTP GG++ +S Sbjct: 524 VTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLE 583 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + L V DTG G++ L + F + + G GLGL + + + + + G Sbjct: 584 R-HDAQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGG 642 Query: 791 KFYIFSTPA-KGTLIEIIFP 809 K S +GT I P Sbjct: 643 KVEAASAGKNRGTTFAITLP 662 >gi|107026341|ref|YP_623852.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia AU 1054] gi|116692471|ref|YP_838004.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia HI2424] gi|105895715|gb|ABF78879.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia AU 1054] gi|116650471|gb|ABK11111.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia HI2424] Length = 666 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 100/379 (26%), Positives = 165/379 (43%), Gaps = 26/379 (6%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L +++A+ D I + I S N A + +FG + + P + + Sbjct: 143 LRRVVDASPDAIVGTDAARRITSWNPAAASIFGIDTAQANGRDIVTMI---APRWLRRHA 199 Query: 514 TEILSLDLRQTLEKITLGSTKEE-----KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568 DLR + + + + + + II + SLT+ + E + + Sbjct: 200 VPASFADLRAPVGPLDVLCVRPDGGRFRATFAASPIIDGQGHCAGLSLTLREAGE--RRR 257 Query: 569 NKLSHAKKI---------AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 N+ H + + A+ + K + LA VSHE+RTPL I G+ EV++N G Sbjct: 258 NERHHLRSLRGARDARVQADASNRLKDELLATVSHELRTPLNVIYGWVEVLRNAD----G 313 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + IDRS + +V DLLD S + +G++ L PV L V +A + A Sbjct: 314 QGFAQQAVDAIDRSARSLSHMVADLLDASSLATGRLRLERVPVDLVRIVRDAARELDATA 373 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 +++ T +A I AD ++Q+ N+LSNAI FTP GG+I +S T + E V L Sbjct: 374 QANGLVLSTEYAMPACVIPADGERLRQLLSNLLSNAIKFTPPGGRINVSLTR-AGERVRL 432 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG G+ L F + + G GLGL + + + + G+ S A Sbjct: 433 SVSDTGQGIAPEYLPHLFDTFSRPEGAFTSPKRGLGLGLSIVRNIAQLHGGEVIATSAGA 492 Query: 800 -KGTLIEIIFPL-YDTSHP 816 +G + + P +D P Sbjct: 493 GRGMTVTVTLPAGWDADDP 511 >gi|323702132|ref|ZP_08113799.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] gi|323532819|gb|EGB22691.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] Length = 453 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 129/229 (56%), Gaps = 13/229 (5%) Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR----YIEYANY-IDRSG 634 K +++F+A VSHE+RTPLT+I GF E + + G + +P+ ++E N R Sbjct: 225 KLERMRTEFVANVSHELRTPLTSINGFLETLLD---GAIEDPKTARHFLEIMNAETKRLA 281 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 NL+ +DLL +S++E K L+ +PV L + ++ I + + A EK I + T + + Sbjct: 282 NLI----DDLLQLSRLEDRKTVLNKQPVDLRDVINGTIQMFKARAEEKGIKLFTVLPDKL 337 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 P++ D + Q+ +N++ NAI +TP+ GQ+ + + + E+V + V DTG+G+ +L Sbjct: 338 PQVPGDHGLLTQVMVNLIDNAIKYTPAFGQVKVG-VNLNREKVRVYVADTGIGIPQEDLP 396 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 + + F ++ ++ GTGLGL + K +V+ + G+ + S P T Sbjct: 397 RIFERFYRVDKARSRVMGGTGLGLAICKHIVEVHGGQIEVESGPGGSTF 445 >gi|254429445|ref|ZP_05043152.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] gi|196195614|gb|EDX90573.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Alcanivorax sp. DG881] Length = 782 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 92/318 (28%), Positives = 163/318 (51%), Gaps = 25/318 (7%) Query: 507 SVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISE 563 + M + L +D LE I LG+ E LLS F+ + +T+ + + Sbjct: 323 ATMAYILKTFQLIDGGWILENIMQLGTFTEALLLS---------FALAHRMTVLKSENAR 373 Query: 564 WKQEKNKLSHAKKIAEKES------SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 ++E N++ +++ E+ S +S+FLA +SHEIRTPL IIG +++K P Sbjct: 374 IQREANEVLE-QRVTERTGELNAALSARSEFLAVMSHEIRTPLNGIIGTVDMLKGT---P 429 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 L + + N I++SGN +L+++ND+LD S+IE+GKM + +L ++E+++L Q Sbjct: 430 LDDEQR-HNLNVIEQSGNSLLNLINDILDYSRIEAGKMPIEQTSFNLFNLINESLALFQH 488 Query: 678 YANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A+ + A ++ R L D ++QI +N++SNA+ FT +G + N + Sbjct: 489 KAHVHSNTLTLEIAPHVGERCLGDPVRLRQILVNLISNAVKFTDNGTITVRVQRDPDNAD 548 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V D+G+G++ + + F Q +S R GTGLGL + + +V+ G+ + Sbjct: 549 YAFFEVHDSGIGISEEQQRRLFDHFQQGDSSTSRRYGGTGLGLAICRQLVEIMGGEIGVD 608 Query: 796 STPAKGTLIEIIFPLYDT 813 S P +G+ P+ T Sbjct: 609 SQPKQGSRFWFRLPIPST 626 >gi|119503200|ref|ZP_01625284.1| Multi-sensor Hybrid Histidine Kinase [marine gamma proteobacterium HTCC2080] gi|119460846|gb|EAW41937.1| Multi-sensor Hybrid Histidine Kinase [marine gamma proteobacterium HTCC2080] Length = 664 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 71/249 (28%), Positives = 128/249 (51%), Gaps = 7/249 (2%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q L A+ A+ + K+ FLA +SHEIRTP+ ++G +IK + R Sbjct: 235 QQAIKALEVARDEAQHVADTKTSFLANMSHEIRTPMNGVVGMISLIKETEL----SKRQR 290 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 Y + I++S +L +++D+LD +K+ESG + + P SL + ++ ++ ++ A K + Sbjct: 291 VYFDTIEKSAAGLLVVIDDILDFTKLESGHLRIRTAPFSLSDLLATLNTIFEMQAANKGL 350 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--V 741 + A+ +P R++ D ++Q+ LN++ NA+ FT G ++ T +E ++R V Sbjct: 351 KFQLVSADGLPDRVIGDPARLRQLLLNLIGNAVKFTDEGSVELLVTPIAESEASLIRFEV 410 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ + K F Q+ + GTGLGL L + + G ST +G Sbjct: 411 VDTGIGIPEEKQPGIFKEFYQVDITSTRAYGGTGLGLALCRELAQLMGGSVSFSSTEGEG 470 Query: 802 TLIEIIFPL 810 + + PL Sbjct: 471 SCFWLDVPL 479 >gi|291523332|emb|CBK81625.1| Signal transduction histidine kinase [Coprococcus catus GD/7] Length = 672 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 77/266 (28%), Positives = 135/266 (50%), Gaps = 13/266 (4%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN--Q 613 +T + E KQE+ +L AK AE + KS FL +SH+IRTP+ AIIG++E+ Q Sbjct: 270 VTDEKLRELKQEE-ELREAKLKAECANKAKSSFLYNMSHDIRTPMNAIIGYAELASRHLQ 328 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 LG RY+E I G +L ++ ++LD+++IE+ K+ + ++ E + Sbjct: 329 ETDKLG--RYLEE---IQICGKELLSMLGNVLDLARIENNKVEIECTVSNVHECFENCVI 383 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + Q A K + + P + D + ++ LNI+SNAI +T +GG+I + S Sbjct: 384 MFQQQAESKNQTLSLTEQIMYPYVYMDAPHLSEVCLNIISNAIKYTNTGGRISCNVVQKS 443 Query: 734 NEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 E+ +I+ + D G+GM+ ++ + F + N+ EG+G+G+ + K +V+ Sbjct: 444 CEKEDWCNMIISITDNGIGMSEEFQKRIFETFERERNTTSSHIEGSGIGMGITKKLVELM 503 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTS 814 G + S KG+ + P S Sbjct: 504 DGTIEVKSKQGKGSTFTVTIPCRKAS 529 >gi|218438110|ref|YP_002376439.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218170838|gb|ACK69571.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 577 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 78/242 (32%), Positives = 130/242 (53%), Gaps = 16/242 (6%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 QE + +HA AE+ S KS+FLA +HE+RTPL IIGF ++I + + E Sbjct: 305 QELEQATHA---AEEASRLKSEFLASTTHELRTPLNGIIGFLKLILDGMAD--DSEEQQE 359 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + +S +L+++ND+LD++KIE+GKM L EPV L+E ++ + A +K + Sbjct: 360 FLEEAHKSALHLLNLINDILDLAKIEAGKMVLELEPVDLEELLTAVNNFTAPQAEQKGLT 419 Query: 686 --IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI----IISTTHTSNEE--- 736 I+ + + + + + Q+ LN++ NAI FT GG + I+ +E+ Sbjct: 420 FKIKKPQTHTPITLYGNYQRLLQVMLNLVGNAIKFTHEGGIVVSAEIVKKKILCHEQEFP 479 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V + V DTG+G++ + K + F QI S+ GTGLGL +++ +V A G+ Sbjct: 480 GIVKISVADTGIGVSLEQQAKLFEKFVQIDGSRTKAYGGTGLGLAISQKLVQAMGGQIDF 539 Query: 795 FS 796 +S Sbjct: 540 YS 541 >gi|162451335|ref|YP_001613702.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161161917|emb|CAN93222.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 517 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 79/255 (30%), Positives = 128/255 (50%), Gaps = 17/255 (6%) Query: 564 WKQEKNKLSHAKKIAE--KESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 W ++ K++ E +ES K DFLA ++HE+R PL I + R L + Sbjct: 123 WIAVVTDITRRKELEEMLRESDRRKDDFLAMLAHELRGPLAPI---RNAVAIMRVLGLED 179 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P+++ + I+R + + +V+DLLD+S+I GK+ L E + L + V EA+ + Sbjct: 180 PKFVYARDIIERQVSHMARLVDDLLDVSRISRGKIALQRETLELADLVQEAVEATRPVIQ 239 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + + RI AD + Q+ +N+L+NA FTP GG+I I + + E ++R Sbjct: 240 TPGHTLSVTLPAEQLRIEADRVRIVQVIVNLLTNAAKFTPPGGRIGIEVSRSEAGEAVIR 299 Query: 741 VRDTGVGMTNYELEKAMKP-----FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V DTGVG +E+AM+P F Q + G G+GL LAK +VD + G+ + Sbjct: 300 VTDTGVG-----IEEAMQPRVFEAFVQETSDLARSQGGLGVGLWLAKQLVDLHGGRIDVE 354 Query: 796 STP-AKGTLIEIIFP 809 S +G + P Sbjct: 355 SAGRGRGAAFTVTLP 369 >gi|153820784|ref|ZP_01973451.1| sensor protein TorS [Vibrio cholerae B33] gi|229510010|ref|ZP_04399490.1| sensor protein TorS [Vibrio cholerae B33] gi|229516429|ref|ZP_04405876.1| sensor protein TorS [Vibrio cholerae RC9] gi|229605664|ref|YP_002876368.1| sensor protein TorS [Vibrio cholerae MJ-1236] gi|255746528|ref|ZP_05420475.1| sensor protein TorS [Vibrio cholera CIRS 101] gi|262158884|ref|ZP_06029997.1| sensor protein TorS [Vibrio cholerae INDRE 91/1] gi|126521827|gb|EAZ79050.1| sensor protein TorS [Vibrio cholerae B33] gi|229346310|gb|EEO11281.1| sensor protein TorS [Vibrio cholerae RC9] gi|229352455|gb|EEO17395.1| sensor protein TorS [Vibrio cholerae B33] gi|229372150|gb|ACQ62572.1| sensor protein TorS [Vibrio cholerae MJ-1236] gi|255736282|gb|EET91680.1| sensor protein TorS [Vibrio cholera CIRS 101] gi|262029457|gb|EEY48108.1| sensor protein TorS [Vibrio cholerae INDRE 91/1] Length = 984 Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 80/255 (31%), Positives = 126/255 (49%), Gaps = 10/255 (3%) Query: 561 ISEWKQEKNK--LSHAK--KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 +SE + N+ L+HAK + AE+ S KS FLA +SHEIRTP+ ++G + ++++ Sbjct: 442 LSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLT 501 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 Y I+RSG +L I+ND+LD SKIE+G + +H L VSE L+Q Sbjct: 502 STQQ----HYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVSETHELMQ 557 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A EK I + ++ + D + Q+ N++ N I FT G I + Sbjct: 558 SRAREKGITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKFTDQGEVRIRIRLAPDGQ 617 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V D+G+G+ E F Q ++ G GTGLGL +++ +V A G+ + Sbjct: 618 GIRFAVEDSGIGIAEEEQATLFDAFTQADAGRRKLG-GTGLGLAISRKLVQAMGGELQLA 676 Query: 796 STPAKGTLIEIIFPL 810 S +G+ PL Sbjct: 677 SQLGQGSCFWFTLPL 691 >gi|312887273|ref|ZP_07746876.1| histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311300231|gb|EFQ77297.1| histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1368 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 85/316 (26%), Positives = 149/316 (47%), Gaps = 46/316 (14%) Query: 536 EKLLSLRIIIKKLPFSSCYSLTM----------HDISEWKQ--EKNKLSHAKKIAEKESS 583 EK SL+I+I PF + T+ + I K+ E KL K+ E+ Sbjct: 769 EKGASLKIVIAP-PFWKTWWFTLLIAGIVFMSTYYILRLKRNLELRKLEEQKR--EEIHQ 825 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + F +SHE RTPLT I+G E+++ R G + Y N I R+ N ++ ++ Sbjct: 826 LQLQFFTNISHEFRTPLTLILGPLEILRKGESRIG------FTHYYNTIHRNANRLMGLI 879 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 N+L+D K+ESG +NL P + + +SE A EK I + + ++ + D Sbjct: 880 NELMDFRKVESGVLNLKVMPGNPNLFLSEIADEFYDLAQEKNITFKVNQSDRVSEAWFDR 939 Query: 702 RSVKQIALNILSNAIHFTPSGGQII-------------------ISTTHTSNEEVILRVR 742 + V++I LN+++NA +TP+ G+I+ I + S + RV Sbjct: 940 QIVEKIMLNLVNNAFKYTPNNGEIVLEVLSSLKDFKAAFQNELMIKNGYQSKNYIYFRVA 999 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D+G+G++ ++ + + +I S G+G+GL K++ + G+ Y++S +GT Sbjct: 1000 DSGIGISKESIQHLFERYYRITESHM----GSGVGLAFVKSLTTLHKGEIYVYSQKGEGT 1055 Query: 803 LIEIIFPLYDTSHPHD 818 I I P ++ D Sbjct: 1056 EIIIALPCNAANYDKD 1071 >gi|237509427|ref|ZP_04522142.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei MSHR346] gi|235001632|gb|EEP51056.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei MSHR346] Length = 771 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 100/380 (26%), Positives = 172/380 (45%), Gaps = 23/380 (6%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +R+ L ++EA+ D I + I S N A ++FGY ++ + V + Sbjct: 245 ERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGY--DEHAARGCDVAMLI 302 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSC--YSLT 557 + NH L E + D+R+ +E + + +++ +R + P +C SLT Sbjct: 303 APRWLRNHPLPESVP-DMREPIENVDVLCVRQDGG-RMRATMSASPVFDERDACIALSLT 360 Query: 558 MHDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + D E ++ + A++ A+ + K + LA VSHE+RTPL I G+ EV+ Sbjct: 361 LRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVL 420 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +N P+ + + IDRS + +V D+LD S + +GK+ L PV L V++ Sbjct: 421 RN----PVDGALQQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVND 476 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + A I + A + D ++Q+ N+LSNA FTP GG++ +S Sbjct: 477 VTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLE 536 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + L V DTG G++ L + F + + G GLGL + + + + + G Sbjct: 537 R-HDAQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGG 595 Query: 791 KFYIFSTPA-KGTLIEIIFP 809 K S +GT I P Sbjct: 596 KVEAASAGKNRGTTFAITLP 615 >gi|166032915|ref|ZP_02235744.1| hypothetical protein DORFOR_02636 [Dorea formicigenerans ATCC 27755] gi|166027272|gb|EDR46029.1| hypothetical protein DORFOR_02636 [Dorea formicigenerans ATCC 27755] Length = 687 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 79/257 (30%), Positives = 130/257 (50%), Gaps = 13/257 (5%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYAN 628 +L + + A + S K+ FL +SH+IRTP+ AIIGFS+++ L N + EY Sbjct: 295 ELKKSAEQAREASEAKTRFLFNMSHDIRTPMNAIIGFSDLLGKN----LDNEEKVREYLG 350 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I SGN+++ I++ +L++++IES L E +L E ++++ K I Sbjct: 351 KIKSSGNILMRIIDQVLEVARIESETAILKTEAANLSELFYSVNTVLESAIQMKGI--HC 408 Query: 689 SFANNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVR 742 S N+ A D +++I LNI+SNAI +TP G I ++ T+ ++ + Sbjct: 409 SIDANVQHKYAFCDKTKLQEIYLNIMSNAIKYTPDGHAIHVTINETNFDDKKARYVFVCE 468 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+GM L F + + + + GTGLGL + K+ V+ G+ ++ S P KGT Sbjct: 469 DTGIGMAPEYLPHIFDEFSREHTATENKVSGTGLGLSIVKSFVELMNGRIHVESEPGKGT 528 Query: 803 LIEIIFPLYDTSHPHDC 819 + PL S C Sbjct: 529 KFTVEVPLELASEEDVC 545 >gi|156977382|ref|YP_001448288.1| histidine kinase [Vibrio harveyi ATCC BAA-1116] gi|156528976|gb|ABU74061.1| hypothetical protein VIBHAR_06169 [Vibrio harveyi ATCC BAA-1116] Length = 1225 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 81/267 (30%), Positives = 132/267 (49%), Gaps = 10/267 (3%) Query: 554 YSLTMHD-ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 Y +T+ D ISE KQ++ L + A + + FLA VSHE+RTP+ A++G E+++ Sbjct: 661 YRMTVFDDISELKQKETALKASNLKAMQAIEAREHFLAVVSHELRTPIAAMMGLMELLEQ 720 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + E +S + VND+LD SKI++ ++ L ++ + + + Sbjct: 721 D----VERKESKELLKSAMQSAERLQLQVNDILDFSKIDANQLQLDVHKGNVYQELGATL 776 Query: 673 SLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + K + ++ ++A D V QI N+LSNA+ FT G +I + H Sbjct: 777 RSFEKIIERKSLAFELNWTPTPHALVALDWLRVNQIINNLLSNAVKFTKEGK--VIVSVH 834 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 S ++ +V+DTG GM N +L +PF Q S R GTGLG+ + K++VD G Sbjct: 835 VSPNQLEFKVQDTGCGMNNAQLATLFQPFVQGDKSTSRRFGGTGLGMSIVKSLVDIMEGT 894 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHPHD 818 + S +GT I + P+ S P D Sbjct: 895 IEVDSQTEQGTTITVRLPM--ISQPLD 919 >gi|37523980|ref|NP_927357.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35214986|dbj|BAC92352.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 708 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 82/305 (26%), Positives = 149/305 (48%), Gaps = 14/305 (4%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHY 512 L ++ + T+ + I + E ++ N + L G+ ++++ P + T Y Sbjct: 186 LAAVAQLTNHSVVITDVERRVVWVNAGFTALTGFTLDEVRGHNPGALLQGPQTDPATVMY 245 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWK---QE 567 + E L T+E + G ++ L++ + + + + +++E + QE Sbjct: 246 MRERLQRGEGYTVEILNYGKNGDQYWLAIEVQPVRDGTGKLTHFIAVQRNVTEQRRAGQE 305 Query: 568 KNKL----SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 L A+++AE+ + K +FLA +SHE+RTPL I+GF+ +++ R R Sbjct: 306 HQALLEREQRARELAEQNNRLKDEFLATLSHELRTPLNGILGFAGLLRRGRLDTETARRA 365 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 +E I+R+ ++ DLLD+S I +G NL +PV + E VS A++ ++ A KR Sbjct: 366 VEI---IERNAQAQAQLIEDLLDMSSIAAGTFNLQVQPVEMAEVVSAAVAGQRIAAEAKR 422 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 I + + + D R + Q+ N+LSNA+ FTP G+I +S V + V D Sbjct: 423 IRLELRLDPHAGLVSGDRRRLLQVVANLLSNAVKFTPPDGRIEVS-MRCVANAVAIAVAD 481 Query: 744 TGVGM 748 TGVG+ Sbjct: 482 TGVGI 486 >gi|330957172|gb|EGH57432.1| PAS protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 595 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 92/375 (24%), Positives = 164/375 (43%), Gaps = 55/375 (14%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L ++L++ DG+ +I+R+G + N + G+ S + Sbjct: 259 RLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGW-----------------DESCLGQS 301 Query: 513 LTEILSL-DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-------------- 557 L E L +L + L + G T E L I I YS+T Sbjct: 302 LGEALGRPELDEQLHLVLRGGTLERAPEDLAIEIDSESRLLTYSMTPVSHTKGHILGAVM 361 Query: 558 -MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI-IGFSEVIKNQRF 615 +HD++E + + +S+F+ R SHE+RTP+T + + F + + F Sbjct: 362 VLHDVTEQRAFERV--------------RSEFVLRASHELRTPVTGMHMAFGLLQERLHF 407 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P R + N + ++ ++NDLL+ S+ ++G L P S++ + EA + Sbjct: 408 AP--ESREADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSVEALLEEAKARF 465 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A E+ I++ +PR+ AD ++++ N+L NA+ TP G I + E Sbjct: 466 EEQALEQDIVLMLEVQEPMPRLHADQSQLERVLDNLLDNALRHTPPKGLIRLQ-ARRHGE 524 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 I+ V D G G+ + + +PF Q+ + G GLGL L K +V + G+ ++ Sbjct: 525 RAIISVEDNGEGIAYGQQGRIFEPFVQVGRKKG----GAGLGLALCKEIVQLHGGRMGVY 580 Query: 796 STPAKGTLIEIIFPL 810 S P +GT + PL Sbjct: 581 SRPGQGTQFYMALPL 595 >gi|294645464|ref|ZP_06723165.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|292639165|gb|EFF57482.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] Length = 911 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 123/243 (50%), Gaps = 14/243 (5%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 E+NK+ E+ S K F +SHE+RTPL+ I+ E + Q L + Sbjct: 372 ERNKI-------EEISQEKVRFYMNMSHELRTPLSLILAPLEELLGQ--SNLKGTPVQQK 422 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 +Y+ ++G +L IVN LLD K E+G M +H V ++E + +A +L + A ++ I Sbjct: 423 LDYVYKNGRKLLHIVNQLLDFRKAEAGAMPIHVAQVDVEELLQDAFALFKENAQKRAISF 482 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 AD V+ I +N+LSNA FTP GG I +S T + VRD+G+ Sbjct: 483 HIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSISLS-LWTEGDTYGFTVRDSGI 541 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 GM+ +L + F Q+ ++ GTG+GL L K +V+ + G + S PA+ T ++ Sbjct: 542 GMSPEQLTHIFERFYQVDGQRK----GTGIGLSLVKMLVEKHHGTITVASEPAQYTEFKV 597 Query: 807 IFP 809 P Sbjct: 598 TLP 600 >gi|164657947|ref|XP_001730099.1| hypothetical protein MGL_2481 [Malassezia globosa CBS 7966] gi|159103994|gb|EDP42885.1| hypothetical protein MGL_2481 [Malassezia globosa CBS 7966] Length = 1333 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 76/239 (31%), Positives = 125/239 (52%), Gaps = 10/239 (4%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 K + A++ AE + KS+FLA +SHEIRTP+ IIG + + + + Sbjct: 780 KNTAAREAAELANRSKSEFLANMSHEIRTPMNGIIGMTSLTLETELSRTQRENLVTVSTL 839 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + NL L I++D+LDISKIE+G+MN+ P SL V + + + A +K++ + Sbjct: 840 ---ASNL-LAIIDDILDISKIEAGRMNIEEIPFSLRGIVFSVLKTLSVRAAQKKLNLVYE 895 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS---NEEVILR--VRD 743 A N+P ++ D +KQI N++ NA+ FT SGG + + S E +L D Sbjct: 896 VAPNVPDPLIGDALRLKQIITNLIGNAVKFTESGGIVALRCKLNSAPGAPETVLEFCASD 955 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+G+ +L+ F Q S + GTGLGL +++ +V+ G ++ S KG+ Sbjct: 956 SGIGIKQDKLDMIFDTFCQADGSTTRKYGGTGLGLSISRRLVNLMGGDMWVRSHFGKGS 1014 >gi|254296534|ref|ZP_04963990.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 406e] gi|157806537|gb|EDO83707.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 406e] Length = 770 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 100/380 (26%), Positives = 172/380 (45%), Gaps = 23/380 (6%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +R+ L ++EA+ D I + I S N A ++FGY ++ + V + Sbjct: 246 ERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGY--DEHAARGCDVAMLI 303 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSC--YSLT 557 + NH L E + D+R+ +E + + +++ +R + P +C SLT Sbjct: 304 APRWLRNHPLPESVP-DMREPIENVDVLCVRQDGG-RMRATMSASPVFDERDACIALSLT 361 Query: 558 MHDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + D E ++ + A++ A+ + K + LA VSHE+RTPL I G+ EV+ Sbjct: 362 LRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVL 421 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +N P+ + + IDRS + +V D+LD S + +GK+ L PV L V++ Sbjct: 422 RN----PVDGALQQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVND 477 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + A I + A + D ++Q+ N+LSNA FTP GG++ +S Sbjct: 478 VTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLE 537 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + L V DTG G++ L + F + + G GLGL + + + + + G Sbjct: 538 R-HDAQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGG 596 Query: 791 KFYIFSTPA-KGTLIEIIFP 809 K S +GT I P Sbjct: 597 KVEAASAGKNRGTTFAITLP 616 >gi|254226171|ref|ZP_04919766.1| sensor histidine kinase LuxQ [Vibrio cholerae V51] gi|125621273|gb|EAZ49612.1| sensor histidine kinase LuxQ [Vibrio cholerae V51] Length = 857 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 75/262 (28%), Positives = 134/262 (51%), Gaps = 9/262 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ + + + A++ AE+ + +++FLA++SHE+RTPL ++G S+++K PL Sbjct: 454 QDITTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT---PL 510 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N E+ + SG +L ++ND+LD S++E GK + E V + + Sbjct: 511 -NDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRXKELVCAIDRIYRPL 569 Query: 679 ANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-- 735 NEK + L+ S + +D + QI N+L+NAI FT G I + + Sbjct: 570 CNEKGLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGDPL 628 Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +++++V DTG+G+ +L +PF Q ++ G+GLGL + ++V+ G+ ++ Sbjct: 629 AQLVIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHV 688 Query: 795 FSTPAKGTLIEIIFPLYDTSHP 816 S GT EI P+ P Sbjct: 689 SSEYGIGTRFEIQLPIELVERP 710 >gi|291515872|emb|CBK65082.1| Signal transduction histidine kinase [Alistipes shahii WAL 8301] Length = 623 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 80/257 (31%), Positives = 135/257 (52%), Gaps = 22/257 (8%) Query: 559 HDISEWKQ-EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 +DISE K+ E+ +L AKK AE+ + KS FLA +SHEIRTPL AI+GFSE++ ++ Sbjct: 380 YDISELKRTEEEELREAKKRAEESNKLKSAFLANMSHEIRTPLNAIVGFSELLADESR-- 437 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISL 674 + EY + I R+ L+L I++D+LD+++IESG+ ++ F+ L V++++ L Sbjct: 438 --HETRREYTDIILRNNTLLLQIISDVLDLARIESGRTDIERTQFDARDLCREVADSLRL 495 Query: 675 VQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 ++R + +P + + + Q+ N NA+ FT G + I Sbjct: 496 ------QRRPGVELRVEEGLPEFPVTEYRKGLAQVLNNFTRNALKFTEK-GSVTIGFRRI 548 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + VRDTG+G+ + E+ + F ++ Q GTGLGL + K++ + G Sbjct: 549 PG-HIRFYVRDTGIGIAPEDRERIFERFVKLDTFTQ----GTGLGLSICKSIAEQLGGSV 603 Query: 793 YIFSTPAKGTLIEIIFP 809 + S +G+ I P Sbjct: 604 GVDSVAGEGSCFRIDIP 620 >gi|317154768|ref|YP_004122816.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316945019|gb|ADU64070.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 1521 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 134/256 (52%), Gaps = 13/256 (5%) Query: 558 MH---DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 MH DI++ K + +L A AE S K++FLA +SHEIRTPL ++G ++++ Sbjct: 1121 MHMATDITDLKVMEQELKRAMAKAEAASLAKNEFLANMSHEIRTPLNGLLGMLQLLQLTI 1180 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 G G R E+ SG +L I+ND+LDISKIESGK+ L + + L E +++ Sbjct: 1181 LG--GEQR--EFLEIALSSGRSLLQILNDILDISKIESGKLELDDQELDLGEVAESVVAV 1236 Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS--TTH 731 + A + I + +PR LAD ++QI N++ NA FT SG ++ + H Sbjct: 1237 FRHQARMRGIEVALVMDKTLPRHFLADKVRLRQILFNLVGNATKFTESGSVLVEAYPLAH 1296 Query: 732 ---TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 ++ V DTG+G+ + ++++ PF Q+ S + +GTGLGL + + +V Sbjct: 1297 PMPDGRAQLFFSVSDTGIGIPDDKMDQIFDPFTQVDGSFTRKYQGTGLGLGIVRRLVALM 1356 Query: 789 MGKFYIFSTPAKGTLI 804 G + S GT + Sbjct: 1357 GGTIAVDSELGAGTTV 1372 >gi|269103478|ref|ZP_06156175.1| chitin catabolic cascade sensor histidine kinase ChiS [Photobacterium damselae subsp. damselae CIP 102761] gi|268163376|gb|EEZ41872.1| chitin catabolic cascade sensor histidine kinase ChiS [Photobacterium damselae subsp. damselae CIP 102761] Length = 1130 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 125/238 (52%), Gaps = 10/238 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 KQ+ + L A K+ K +FLA SHE+RTPL +IG +E + GP+ + Sbjct: 446 KQQNDDLQTADKL-------KDEFLATTSHELRTPLHGMIGIAESLLAGANGPMQGAQRR 498 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I+ SG + ++V+DLLD K+ G +++ V L AV + L K + Sbjct: 499 QLEMLIN-SGQRLTNLVDDLLDYHKMRYGDLDIDKHAVDLASAVRLVLELSGHLLGTKPV 557 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 I ++P + AD + ++Q+ N++ NAI +T S G+I++S T N +V ++V DT Sbjct: 558 RIINQIPADLPLVQADEQRLEQVLYNLVGNAIKYT-SEGKIVLSATVLEN-QVRIQVVDT 615 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G G+ +LE +P Q + +G GLGL +++ +++ G+ Y+ S P GT Sbjct: 616 GQGIPAEQLEHIFEPLVQANTNHANYRQGAGLGLTISRQLLELMGGRLYVSSQPMVGT 673 >gi|261417885|ref|YP_003251567.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|319767303|ref|YP_004132804.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] gi|261374342|gb|ACX77085.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|317112169|gb|ADU94661.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] Length = 597 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 99/361 (27%), Positives = 164/361 (45%), Gaps = 32/361 (8%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 QL SIL + +DG+ NR+G IL TN P E L+ + F + N M Sbjct: 258 QLASILSSMADGVITFNRDGEILITNP--------PAERFLQAWY--FEQGNDAEAMAPL 307 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 ++ L R +EEK S + ++ + + M + + ++ Sbjct: 308 PPQVKELFAR---------VVREEKEQSTEVTLQ----GRTWVILMTPLYGKTMVRGAVA 354 Query: 573 HAKKIAEKESSHK--SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + + E+ K DF+A VSHE+RTP+ + G+SE I + + + Y Sbjct: 355 VLRDMTEERRLDKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAASEEEKKEMAKVIYD 414 Query: 631 D--RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + R G LV NDLLD++++E+G + L +E V L + I A EK+I + Sbjct: 415 ESLRMGRLV----NDLLDLARMEAGHIELEYEQVKLVPYIERVIRKFYGLAKEKQIELTA 470 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 F + I D ++Q+ N++ NAI T SGG + + S + V + V+D+G G+ Sbjct: 471 EFRDRDIEIALDPDRIEQVLTNLIDNAIRHTESGGTVRL-IIEPSGDGVTIHVQDSGSGI 529 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L + F + ++ GTGLGL +AK +V+A+ G + S +GT Sbjct: 530 PEEDLPFVFERFYKADKARTRSRSGTGLGLAIAKNIVEAHKGLITVHSKLNEGTTFSFYL 589 Query: 809 P 809 P Sbjct: 590 P 590 >gi|90580601|ref|ZP_01236406.1| putative sensor histidine kinase FexB [Vibrio angustum S14] gi|90438259|gb|EAS63445.1| putative sensor histidine kinase FexB [Photobacterium angustum S14] Length = 789 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 97/372 (26%), Positives = 177/372 (47%), Gaps = 29/372 (7%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-KPFTVFLEQNTPSVMNHY 512 L S L+A+ D I N + NRA+S+L G ++++ P+ V+ E+ ++ Sbjct: 157 LKSFLDASPDLIYYRNEKNQFSGCNRAMSELVGKTEKELVGLTPWDVYPEEVAKKIIKTD 216 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM------HDISEWKQ 566 E+ + D T E+ + + L LR K+PF + + DI+E K+ Sbjct: 217 -EELFNEDSAMTDEQWLVYPNGKRALFELR----KVPFYNRNGRRLGLMGFGRDITERKK 271 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 ++ L EK SS K+ F++ +SHE+RTPL I+G S ++ + Y Sbjct: 272 YEDAL-------EKASSDKTSFISTISHELRTPLNGIVGLSRMLLDTDL----TDEQRGY 320 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + S + +I ND++D+ K + ++ L +P+ +E + E ++ QL A +K + Sbjct: 321 LRTVHVSAITLGNIFNDIIDLDKSDRRRLELMPKPLDFNEFIDEMGNISQLMAEQKGLRF 380 Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI--IISTTHTSNEEVILRVRD 743 +P+ I D ++Q+ N++ NA FT GG I + S H + ++I V D Sbjct: 381 DLECLTELPKNIEVDSTRLRQVLWNLIGNATKFTKQGGVILSVSSEIHEHDADIIFEVED 440 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQ-IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +GVG+ E++ + Q+ I GTG+GL +++ +V G + S +G+ Sbjct: 441 SGVGIPKSEIDNIFAMYYQVKQGDDNIHAVGTGIGLAVSRQLVQLMGGDITVHSEVGEGS 500 Query: 803 --LIEIIFPLYD 812 ++I PL + Sbjct: 501 TFTVKIRVPLVE 512 >gi|90413941|ref|ZP_01221926.1| hypothetical protein P3TCK_07746 [Photobacterium profundum 3TCK] gi|90325003|gb|EAS41518.1| hypothetical protein P3TCK_07746 [Photobacterium profundum 3TCK] Length = 908 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 130/234 (55%), Gaps = 10/234 (4%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK+ AEK + KS FLA +SHEIRTPL IIG S ++ + NP EY I+ S Sbjct: 373 AKEEAEKANVAKSSFLANMSHEIRTPLNGIIGMSGILSDTEL----NPSQAEYLQTIETS 428 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 +L ++ND+LD+SKIESG + L +L E V + I++VQ A+E+ + ++ Sbjct: 429 SQTLLLLINDILDLSKIESGNLVLSPHESNLAEVVYDTITIVQAKASEQGLNLQIQLDPE 488 Query: 694 IP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVILRVRDTGVGM 748 +P ++ D ++Q+ +N++SNA+ FT G + +S T+T ++ ++DTG+G+ Sbjct: 489 LPTSVMLDEHRLRQVLMNLMSNAVKFTLQGS-VTLSITYTDIGDKKASLLFSIKDTGIGI 547 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + ++ PF Q S + GTGLGL + + +V+ G + S G+ Sbjct: 548 EKDKQQQVFAPFTQEDGSITRQFGGTGLGLAICRQLVELLGGSIELKSEKGFGS 601 >gi|37677080|ref|NP_937476.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] gi|37201625|dbj|BAC97446.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] Length = 720 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 85/258 (32%), Positives = 125/258 (48%), Gaps = 11/258 (4%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q+ + AK+ AE + KS FLA +SHE+RTPL AIIG S+ + R Sbjct: 219 QQQSLDMQEAKRAAEASAETKSKFLANISHEVRTPLNAIIGLSDT--DHYLNASEQIR-- 274 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE--- 681 EY + I RSG +L ++ND+LDISKI+SGK+ L SL + V + L Sbjct: 275 EYIDLIHRSGKHLLALMNDILDISKIDSGKLTLEQVEFSLKDIVDDTRVLFHERTQTPGV 334 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR- 740 + +I + I D + QI N+ SNAI FT G + T +L+ Sbjct: 335 ESFIITPQDCDMI--FYGDPLRLFQIISNLCSNAIKFTHEGQIKVAFTVQNRGPNSVLQI 392 Query: 741 -VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G++ +L+K F Q +S + GTGLGL + + + + G I S Sbjct: 393 CVSDTGIGISEAQLQKVFDEFVQADDSTTRKYGGTGLGLAICQKLTNLMQGTLRIESELN 452 Query: 800 KGTLIEIIFPLYDTSHPH 817 +GT + + L PH Sbjct: 453 RGTHVTLSLTLPLLHAPH 470 >gi|293369521|ref|ZP_06616100.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292635406|gb|EFF53919.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 1197 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 125/243 (51%), Gaps = 14/243 (5%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 E+NK+ E+ S K F +SHE+RTPL+ I+ E + Q L + Sbjct: 658 ERNKI-------EEISQEKVRFYMNMSHELRTPLSLILAPLEELLGQS--NLKGTPVQQK 708 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 +Y+ ++G +L IVN LLD K E+G M +H V+++ + +A +L + A ++ I Sbjct: 709 LDYVYKNGRKLLHIVNQLLDFRKAEAGVMPIHVAQVNVEGLLQDAFALFKENAQKRAISF 768 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 AD V+ I +N+LSNA FTP GG I++S T + VRD+G+ Sbjct: 769 HIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSILLS-LWTEGDTYGFTVRDSGI 827 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 GM+ +L + + F Q+ ++ GTG+GL L K +V+ + G + S PA+ T ++ Sbjct: 828 GMSPEQLTRIFERFYQVDGQRK----GTGIGLSLVKMLVEKHHGTITVASEPAQYTEFKV 883 Query: 807 IFP 809 P Sbjct: 884 TLP 886 >gi|262408173|ref|ZP_06084720.1| two-component system sensor histidine kinase/response [Bacteroides sp. 2_1_22] gi|294806731|ref|ZP_06765558.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|262353725|gb|EEZ02818.1| two-component system sensor histidine kinase/response [Bacteroides sp. 2_1_22] gi|294446013|gb|EFG14653.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1365 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 123/243 (50%), Gaps = 14/243 (5%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 E+NK+ E+ S K F +SHE+RTPL+ I+ E + Q L + Sbjct: 826 ERNKI-------EEISQEKVRFYMNMSHELRTPLSLILAPLEELLGQS--NLKGTPVQQK 876 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 +Y+ ++G +L IVN LLD K E+G M +H V ++E + +A +L + A ++ I Sbjct: 877 LDYVYKNGRKLLHIVNQLLDFRKAEAGAMPIHVAQVDVEELLQDAFALFKENAQKRAISF 936 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 AD V+ I +N+LSNA FTP GG I +S T + VRD+G+ Sbjct: 937 HIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSISLS-LWTEGDTYGFTVRDSGI 995 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 GM+ +L + F Q+ ++ GTG+GL L K +V+ + G + S PA+ T ++ Sbjct: 996 GMSPEQLTHIFERFYQVDGQRK----GTGIGLSLVKMLVEKHHGTITVASEPAQYTEFKV 1051 Query: 807 IFP 809 P Sbjct: 1052 TLP 1054 >gi|167630148|ref|YP_001680647.1| signal transduction histidine kinase, putative [Heliobacterium modesticaldum Ice1] gi|167592888|gb|ABZ84636.1| signal transduction histidine kinase, putative [Heliobacterium modesticaldum Ice1] Length = 477 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 132/255 (51%), Gaps = 10/255 (3%) Query: 564 WKQEKNKLSHAKKI-----AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 W ++ L A I + +++F+A VSHE+RTPLT+I GF E + + G L Sbjct: 226 WTDQRRLLGAAMVIDDVTEVRRLEQMRTEFVANVSHELRTPLTSIKGFVETLLD---GAL 282 Query: 619 GNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + + + + I+ + ++ DLL +S+IES + L+ + +L++ Sbjct: 283 DDTKVARRFLSIINEETQRLQRLIEDLLQLSRIESQLGRVVEGQSYLEPEIQRVRNLLEP 342 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A +KRI ++ N+P + ++KQ+ +N+ NAI +TP GGQ+ + T + V Sbjct: 343 IAADKRIALQVDVETNLPLLPLSPDNLKQVLVNLTENAIKYTPEGGQVSVRATRGCD-SV 401 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 IL V+DTG+G+ L + + F ++ ++ GTGLGL + K +++ + G+ + S Sbjct: 402 ILEVQDTGIGIPEESLPRIFERFYRVDKARSRELGGTGLGLAIVKHIIERSGGRVTVQSK 461 Query: 798 PAKGTLIEIIFPLYD 812 G+ + FP+ + Sbjct: 462 VGVGSTFTVTFPVAE 476 >gi|152997039|ref|YP_001341874.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150837963|gb|ABR71939.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 1426 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 132/249 (53%), Gaps = 10/249 (4%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI++ + ++ L AK A+ S+ KS+FLA +SHEIRTP+ AI+G ++K Sbjct: 744 RDITQERGLEDWLRKAKDEADAASAAKSNFLANMSHEIRTPMNAILGMLHLVKRTTLTHQ 803 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N +Y + S +L ++ND+LD SK+++GK+ L P ++E + E +++ Sbjct: 804 QN----DYVSKAQISAKSLLSLINDILDFSKVDAGKLELEKAPFEVEELLCELSTVLSGS 859 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 + EK + + +IP ++ D + QI +N++SNA+ FT G +++ S + Sbjct: 860 SLEKDVELIFDIDKDIPAYLIGDKLRLLQILINLVSNAVKFTLEGS-VVLEIKQLSIDPR 918 Query: 738 ILR----VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + R V+DTG+G+ +++ F Q +S R G+GLGL + + V+ G Sbjct: 919 VSRLSVSVKDTGIGIAKDQIDSIFDVFSQGESSTARRFGGSGLGLVICRRFVELMGGSLQ 978 Query: 794 IFSTPAKGT 802 + S +G+ Sbjct: 979 VDSVLGEGS 987 >gi|5225252|gb|AAD40816.1|U59310_1 histidine kinase [Nectria haematococca mpVI] Length = 801 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 78/255 (30%), Positives = 130/255 (50%), Gaps = 22/255 (8%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 IS + + + A++ AE + KS+FLA +SHEIRTP+ IIG +++ + Sbjct: 202 ISNLRDSIQRNTQAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTQYQR 261 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 E N ++ N +L I++D+LD+SKIE+ +M + P +L V +A+ + + AN Sbjct: 262 ----EMLNIVNNLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFDALKTLAVKAN 317 Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 EK + + +++P ++ D ++QI LN++ NAI FT G + T E V Sbjct: 318 EKFLDLTYKVDSSVPDYVIGDSFRLRQIILNLVGNAIKFTEHG-----EVSLTIKERVEQ 372 Query: 740 R------------VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 R V DTG+G+ +L+ F Q S + GTGLGL ++K +V+ Sbjct: 373 RNVRPGEYAVEFIVEDTGIGIAKDKLDLIFDTFQQADGSMTRKFGGTGLGLSISKRVVNL 432 Query: 788 NMGKFYIFSTPAKGT 802 G ++ S KG+ Sbjct: 433 MGGDLWVISEQGKGS 447 >gi|325961693|ref|YP_004239599.1| signal transduction histidine kinase [Arthrobacter phenanthrenivorans Sphe3] gi|323467780|gb|ADX71465.1| signal transduction histidine kinase [Arthrobacter phenanthrenivorans Sphe3] Length = 547 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 125/230 (54%), Gaps = 5/230 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K+DFLA V+HE+RTPLT+I+ + ++I+ + P+ +P + + + R+ + ++ D+ Sbjct: 311 KTDFLATVNHELRTPLTSIMAYLDMIQERTEQPV-SPEVHQMLDIVVRNTERLRILIEDM 369 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 L +S+ +H PV L + + + ++ A + + I P ILAD + Sbjct: 370 LSVSRNGLDDSLMHLTPVRLGQTLDLVAAALRPLATLQNVTIAVEPVPEDPEILADEVQL 429 Query: 705 KQIALNILSNAIHFTPSGGQI-IISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPF 760 +Q+ N++SNAI FTPSGG+I + S +H + + + V DTG+G+++ E+ F Sbjct: 430 QQVFTNLVSNAIKFTPSGGRIEVGSESHAAADGTRWATVSVADTGIGISSDEIHHVFTRF 489 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + N+ GTGLGL + K +V + G+ + ST GT + + PL Sbjct: 490 YRASNAMAGAIPGTGLGLAITKDIVSRHGGRIDVSSTLGSGTTVTVSLPL 539 >gi|325106120|ref|YP_004275774.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] gi|324974968|gb|ADY53952.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] Length = 829 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 77/251 (30%), Positives = 134/251 (53%), Gaps = 12/251 (4%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L + DIS+ + + +L AK+ AE S K FLA +SHEIRTPL IIGFSE+++ +R Sbjct: 323 LILRDISKGNEYRKQLEKAKEEAEYHSMAKQRFLANMSHEIRTPLQTIIGFSELLRKERE 382 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P+ I+ Y S ++ IVN++LD ++I SGK+ + ++ + E +++ Sbjct: 383 IK---PKNIDAIYY---SSEHLMHIVNEILDYNRIVSGKIAITPTVFHMENLLQEVFTVL 436 Query: 676 QLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 + A +K I + F ++ + D +KQI N+L NAI +T G + ++ + N Sbjct: 437 KYQAEKKGIKLYADFDFEDVSYVKGDAFRLKQILYNLLGNAIKYTDK-GHVALNVSCKKN 495 Query: 735 EE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + + DTGVGM++ + + F +I + EG GLGL + K +++ G+ Sbjct: 496 KSGLHFMFVIEDTGVGMSHEDTQNIFNEFERIDKIVSDK-EGAGLGLSITKLLIEQQEGR 554 Query: 792 FYIFSTPAKGT 802 + S +G+ Sbjct: 555 ISVRSKLGEGS 565 >gi|289669047|ref|ZP_06490122.1| two-component system sensor protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 942 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 84/265 (31%), Positives = 127/265 (47%), Gaps = 25/265 (9%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPRYIEYANYID 631 A+ AE S K +FLA +SHE+RTPL AI+G+S ++++ LG I I+ Sbjct: 547 ARGQAEHASRVKDEFLATLSHELRTPLNAILGWSRLMQSDVAESANLGRGLVI-----IE 601 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF- 690 RS I++DLLD+S I SGK+ L E + V + L+Q A + I + Sbjct: 602 RSARAQKQIIDDLLDMSAIMSGKIRLQAEHFDIAGLVRSTLELMQPTALARGIALELDAP 661 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + D ++Q+ N+LSNA+ FTP+GG + ++ +E + L V+DTG+G+ Sbjct: 662 CDGELWFFGDAGRLQQVLTNLLSNALKFTPTGGTVRVAMD-IEDERLRLCVQDTGIGIAA 720 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 L F Q R G GLGL +++ +VD + G S +G L I+ P Sbjct: 721 EFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEGQGALFTIVLP 780 Query: 810 L-----------YDTSH----PHDC 819 DT+H P DC Sbjct: 781 FRNGVSDLRPASADTAHAGTLPDDC 805 >gi|148977989|ref|ZP_01814541.1| multi-sensor hybrid histidine kinase [Vibrionales bacterium SWAT-3] gi|145962809|gb|EDK28082.1| multi-sensor hybrid histidine kinase [Vibrionales bacterium SWAT-3] Length = 1224 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 20/228 (8%) Query: 585 KSDFLARVSHEIRTPLTAIIGFS------EVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 KSDFLA +SHEIRTP+ AIIG S ++ K QR Y + + S + +L Sbjct: 480 KSDFLANMSHEIRTPMNAIIGMSYLALKTDLTKAQR----------NYIHKVKLSSDTLL 529 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RI 697 ++ND+LD SKIE+GK+++ L+ + +LV L A+E+ + + ++P + Sbjct: 530 GLINDILDFSKIEAGKLDIENVDFHLENVLDNITNLVGLRASERGLELLIQVDRDVPTNL 589 Query: 698 LADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 + D + QI +N+ +NA+ FT G I+++ H + ++ V D+G+GMT + + Sbjct: 590 IGDPLRLGQILINLSNNAVKFTEKGEVKISILVAERHGDDIKLKFSVSDSGIGMTQEQAD 649 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 K F Q +S + GTGLGL ++K + G + + KG+ Sbjct: 650 KLFNKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIQVSTELGKGS 697 >gi|71907451|ref|YP_285038.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Dechloromonas aromatica RCB] gi|71847072|gb|AAZ46568.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 582 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 84/246 (34%), Positives = 127/246 (51%), Gaps = 11/246 (4%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E KQ + + AK+IAE E+ KS FL +SHEIRTP+ I+G ++++ R L Sbjct: 179 ERKQSEEEALRAKEIAEAENQAKSRFLTTMSHEIRTPMNGILGMAQLMLVSR---LTEQE 235 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 ++A I SG +L ++ND+LD SKIE+GK+ L S + V EA +L A K Sbjct: 236 QHDHARTILNSGQSLLALLNDILDFSKIEAGKLELTPAVFSPRQIVDEAATLFAESAKAK 295 Query: 683 RILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSG-----GQIIISTTHTSNEE 736 ++I + I R LAD ++Q+ N+++N+I FT SG G+ I S E Sbjct: 296 GLVIEAVWHGPIDQRYLADPMRLRQMLANLINNSIKFTGSGFVRIEGREIEPMADASLLE 355 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V D+G+G+ +L +PF Q +S G+GLGL + + G + S Sbjct: 356 --FSVTDSGIGIPPEKLTLLFRPFSQADSSTTREYGGSGLGLSIVHNLAKLMGGDAGVES 413 Query: 797 TPAKGT 802 P KG+ Sbjct: 414 EPGKGS 419 >gi|56420813|ref|YP_148131.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] gi|56380655|dbj|BAD76563.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] Length = 597 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 99/361 (27%), Positives = 164/361 (45%), Gaps = 32/361 (8%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 QL SIL + +DG+ NR+G IL TN P E L+ + F + N M Sbjct: 258 QLASILSSMADGVITFNRDGEILITNP--------PAERFLQAWY--FEQGNDAEAMAPL 307 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 ++ L R +EEK S + ++ + + M + + ++ Sbjct: 308 PPQVKELFAR---------VVREEKEQSTEVTLQ----GRTWVILMTPLYGKTMVRGAVA 354 Query: 573 HAKKIAEKESSHK--SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + + E+ K DF+A VSHE+RTP+ + G+SE I + + + Y Sbjct: 355 VLRDMTEERRLDKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAASEKEKKEMAKVIYD 414 Query: 631 D--RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + R G LV NDLLD++++E+G + L +E V L + I A EK+I + Sbjct: 415 ESLRMGRLV----NDLLDLARMEAGHIELEYEQVKLVPYIERVIRKFYGLAKEKQIELTA 470 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 F + I D ++Q+ N++ NAI T SGG + + S + V + V+D+G G+ Sbjct: 471 EFRDRDIEIALDPDRIEQVLTNLIDNAIRHTESGGTVRL-IIEPSGDGVTIHVQDSGSGI 529 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L + F + ++ GTGLGL +AK +V+A+ G + S +GT Sbjct: 530 PEEDLPFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGLITVHSKLNEGTTFSFYL 589 Query: 809 P 809 P Sbjct: 590 P 590 >gi|302842110|ref|XP_002952599.1| hypothetical protein VOLCADRAFT_93268 [Volvox carteri f. nagariensis] gi|300262238|gb|EFJ46446.1| hypothetical protein VOLCADRAFT_93268 [Volvox carteri f. nagariensis] Length = 1021 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 126/250 (50%), Gaps = 4/250 (1%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 +E N+L+ ++++ K DFL+ +SHE+RTPL IIG SE + G L + ++ Sbjct: 272 EEANRLATIQQLS-TAIERKDDFLSAMSHELRTPLNGIIGLSESLMAGACGQLPE-KAVK 329 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + + SG +L ++ND+LD +K++ G + + E V + V++ + L + L Sbjct: 330 TISTVKLSGKRLLQLINDILDAAKMKQGTLVIKHEKVDIKRLVTDVLDLSLPLVRKGVRL 389 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + N+P+I+ D + QI N++ NA FT G I + N +V + V DTG Sbjct: 390 VNN--VGNVPKIVGDNGRIVQILYNLVGNAAKFTRQGVISITAGVSEDNIKVYVTVSDTG 447 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 VG+ ++ K F Q S R GTGLGL L K +V A+ G+ + S G L Sbjct: 448 VGIPKEKVPKIFGAFEQADMSTTRRYGGTGLGLHLVKELVKAHGGEITVESESTIGRLGV 507 Query: 806 IIFPLYDTSH 815 ++ SH Sbjct: 508 LMLAPLLCSH 517 >gi|269139259|ref|YP_003295960.1| PAS/PAC domain protein [Edwardsiella tarda EIB202] gi|267984920|gb|ACY84749.1| PAS/PAC domain protein [Edwardsiella tarda EIB202] gi|304559167|gb|ADM41831.1| hypothetical protein ETAF_1723 [Edwardsiella tarda FL6-60] Length = 1520 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 81/266 (30%), Positives = 131/266 (49%), Gaps = 11/266 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ +Q + L AK AE + KS FLA +SHE+RTPL AI+G ++ Sbjct: 739 DITRQRQAEATLQAAKLAAENANQAKSAFLANMSHELRTPLNAILGMLTLLLKSGL---- 794 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 R +YA + + +L ++ND+LD SKIE+GKM L EP SL + + ++ + Sbjct: 795 THRQADYATKSEAAARALLRLLNDILDYSKIEAGKMELETEPFSLCNLLQDLAVILSSSS 854 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +K + + ++P ++ D ++Q+ +N+ NA+ FT G + +++ + Sbjct: 855 RQKPVEVLFDIDPSLPHWLVGDSLRLQQVLINLGGNALKFTERGEVTLFIRLLAQDQQTV 914 Query: 739 ---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 VRDTG+G+ + F Q S R GTGLGL +++ V G + Sbjct: 915 TLHFGVRDTGIGIAPEKQRAIFSGFSQAEASITRRFGGTGLGLSISQRFVTMMGGTLQVE 974 Query: 796 STPAKGTLIE--IIFPLYDT-SHPHD 818 S P KG+L + PL +HP D Sbjct: 975 SEPGKGSLFHFTLTLPLAAADAHPDD 1000 >gi|298530365|ref|ZP_07017767.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509739|gb|EFI33643.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 645 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 74/258 (28%), Positives = 135/258 (52%), Gaps = 13/258 (5%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ KQ + L +AKK AE + K++FLA +SHEIRTPL I G +++ + PL Sbjct: 247 DITLQKQAQQALLNAKKDAEAANQSKNEFLANMSHEIRTPLNGIEGMMQMLLST---PLN 303 Query: 620 N--PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + ++IE + R + ++++D+LD+S++E+G+ ++ +L + L+ + Sbjct: 304 SEQQKFIEMGHQASRR---MTELLSDILDLSRLEAGREDVSKRTFNLKDVCDSLWDLLGI 360 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII----ISTTHT 732 + EK I + + + ++P ++ D V+QI N++ NA+ FT G + + +H Sbjct: 361 KSREKGIPLTFNLSPSLPDTLMGDSTMVRQILFNLVGNALKFTEHGQVTLDIHPLPQSHQ 420 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 +V+ V DTG G+ + + ++ KPF + S + EG GLGL + + G Sbjct: 421 DQLQVLFTVSDTGPGIPDDKQDRIFKPFDMVNGSLTRKHEGKGLGLTVTHRLAKLMGGTI 480 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S +GT I + P Sbjct: 481 SVDSAEGQGTSIYVTLPF 498 >gi|77362202|ref|YP_341776.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas haloplanktis TAC125] gi|76877113|emb|CAI89330.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas haloplanktis TAC125] Length = 1585 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 106/423 (25%), Positives = 194/423 (45%), Gaps = 55/423 (13%) Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 EKAN++ +++ + PE + + + K ++ V +C +L+ I I N + ++ + Sbjct: 879 EKANRYNKSLAMLTVAPEVQSSDVAEVK-KLAVKSMCEVLDVQRASIWIFNEQRDLMICH 937 Query: 479 -------------------------RAVSKLFGYPVEDILRKPFTV-FLEQ-----NTPS 507 A+ K ++D+ P TV F+E N S Sbjct: 938 SLNIQGQGVDCCNAQLSAEDYPAYYEAIYKQNLIAIDDVYNHPATVDFIEHYAKPNNIKS 997 Query: 508 VMNHYLTEI---LSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSSCYSLTMHDISE 563 +++ +T L + +T+ + + EE L SL ++ S Sbjct: 998 MLDAVITTGDGNLGILCAETVGEFRQWTQSEETYLRSLATLVGSTLVSQ----------R 1047 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 KQ +L A +A++ KS FLA +SHEIRTP+ ++G E+I+ ++ P+ Sbjct: 1048 RKQTAEELKIALVLAKEAGVAKSQFLATMSHEIRTPMNGVLGMLELIQLEQL-----PKP 1102 Query: 624 IEYANYIDR-SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 IE I + S + +L ++ND+LD SK E+GK+ L + + + E + L A K Sbjct: 1103 IETKVAIAKTSAHSLLGVINDILDFSKAEAGKIELESINFNARDLIGEVAAAQALTAQNK 1162 Query: 683 RILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR- 740 I I P L+ D ++Q+ N+LSNA+ FT G ++ ++ +++L+ Sbjct: 1163 GIEIILDLVALEPSQLSGDPGRIRQVLTNLLSNAVKFTNEGEVVVSASIERIEAQLMLQV 1222 Query: 741 -VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V+D+G+G++ + ++ PF Q+ S GTGLGL ++K + + G I S Sbjct: 1223 SVKDSGIGISKEKQQQLFAPFMQVDASTTREYGGTGLGLAISKQLCELMGGAITIKSNAG 1282 Query: 800 KGT 802 +G+ Sbjct: 1283 QGS 1285 >gi|86132863|ref|ZP_01051454.1| two-component system sensor histidine kinase/response regulator [Dokdonia donghaensis MED134] gi|85816569|gb|EAQ37756.1| two-component system sensor histidine kinase/response regulator [Dokdonia donghaensis MED134] Length = 1216 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 77/256 (30%), Positives = 132/256 (51%), Gaps = 10/256 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+E K+ +L AK+ AE+ KS FLA +SHE+RTP+ I+GFSE+++ + Sbjct: 824 TNQDITEQKKLSGELISAKEKAEESDRLKSAFLANLSHEMRTPMNGILGFSELLRRKNIS 883 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 Y+E +++ G+ +L +++++DISKIES +N+ ++L+ + + S Q Sbjct: 884 EEKKDIYLE---LLEKEGHRLLSFISNIVDISKIESNIINIENSHLNLNSLIDDLYSKYQ 940 Query: 677 LY--ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 L ++ + + ++ I D + QI N+L NAI FT G I +T Sbjct: 941 LKLEGTNIKLEVNKALSDTDSAIETDENKLVQILSNLLENAIKFTKEGS---IEFGYTLK 997 Query: 735 EEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 EE++ V+D+G+G+ E + F Q +Q G GLGL + K ++ G + Sbjct: 998 EEILQFYVKDSGIGIDEEEQKNIFDRFTQ-GKREQTHNLGVGLGLSIVKGLIKILNGSVW 1056 Query: 794 IFSTPAKGTLIEIIFP 809 I S +G++ P Sbjct: 1057 IESKIGEGSIFYFTIP 1072 >gi|326804030|ref|YP_004321848.1| PAS domain S-box protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651194|gb|AEA01377.1| PAS domain S-box protein [Aerococcus urinae ACS-120-V-Col10a] Length = 623 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 94/392 (23%), Positives = 179/392 (45%), Gaps = 54/392 (13%) Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 V R + E E +L S+L+ +DG+ +R ++ TN +L G Sbjct: 257 VRVREAQESTESERQRLDSVLKHMTDGVIATDRRSRVMITNNRACELIG----------- 305 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK----------EEKLL--SLRIII 545 + +M H + E+L+L + T ++ + +E ++ L +I Sbjct: 306 -----KKEAEIMGHSIMEVLNLRDKYTFRELLNSESDILMHFTSDDGQESIIKGELSVIQ 360 Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 ++ + S + D++E EK + F++ VSHE+RTPLT++ Sbjct: 361 RESGYVSGLVWVLTDVTE--------------HEKIERDRRQFVSNVSHELRTPLTSVRS 406 Query: 606 FSEVIKNQRFGPLGNPRY-IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 +SE + + G + + +E+ I R + ++ +++DLL++S+++S + ++ E + Sbjct: 407 YSEALAD---GAIKDSELAVEFLGVIQRETDRMIRMISDLLNLSRMDSNRQEMNLELIDF 463 Query: 665 DEAVSEAISLVQL------YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 V+ + + Y NE+ I+ + + AD + Q+ NIL+NAI + Sbjct: 464 QGLVNHILDRFDMMIQSEDYVNEE-YHIQRELTKSPIWVEADQDRLTQVIDNILNNAIKY 522 Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 +P GG I + T NE IL V+D G+G+ L F ++ ++ + G+GLGL Sbjct: 523 SPDGGTITVRLMTTHNE-AILSVQDQGLGIPQKALGHVFDRFYRVDKARSRQQGGSGLGL 581 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +AK +V+ + GK + S KG+ I P Sbjct: 582 AIAKEVVELHHGKIWANSIENKGSTFFISLPF 613 >gi|237714341|ref|ZP_04544822.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229445505|gb|EEO51296.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 1343 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 123/243 (50%), Gaps = 14/243 (5%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 E+NK+ E+ S K F +SHE+RTPL+ I+ E + Q L + Sbjct: 804 ERNKI-------EEISQEKVRFYMNMSHELRTPLSLILAPLEELLGQS--NLKGTPVQQK 854 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 +Y+ ++G +L IVN LLD K E+G M +H V ++E + +A +L + A ++ I Sbjct: 855 LDYVYKNGRKLLHIVNQLLDFRKAEAGAMPIHVAQVDVEELLQDAFALFKENAQKRAISF 914 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 AD V+ I +N+LSNA FTP GG I +S T + VRD+G+ Sbjct: 915 HIKSDLEGRLFPADRTYVETILMNLLSNAFKFTPDGGSISLS-LWTEGDTYGFTVRDSGI 973 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 GM+ +L + F Q+ ++ GTG+GL L K +V+ + G + S PA+ T ++ Sbjct: 974 GMSPEQLTHIFERFYQVDGQRK----GTGIGLSLVKMLVEKHHGTITVASEPAQYTEFKV 1029 Query: 807 IFP 809 P Sbjct: 1030 TLP 1032 >gi|256419372|ref|YP_003120025.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] gi|256034280|gb|ACU57824.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] Length = 2037 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 126/242 (52%), Gaps = 14/242 (5%) Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S +KS+FLA +SHE+RTPL +++ ++ + G L N + + YA I G+ ++ ++ Sbjct: 1341 SKYKSEFLANMSHELRTPLNSLLILAQQLYENHDGNL-NEKQVRYAKTIHSCGDDLIQLI 1399 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700 ND+LD+SKIESG ++ F V +E VS + + + K + R +P+ L D Sbjct: 1400 NDILDLSKIESGYISTDFIKVRFNEVVSFVETTFKHISESKSLRFRIEMDEQLPQSLETD 1459 Query: 701 LRSVKQIALNILSNAIHFTPSG------------GQIIISTTHTSNEEVILRVRDTGVGM 748 ++ + QI N+LSNA FT G +++ + +++ V +RDTG+G+ Sbjct: 1460 VQRLNQILKNLLSNAFKFTEKGEVKLRIYEAKRNWRLMNGSLDSADRVVAFEIRDTGIGI 1519 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + + F Q S + GTGLGL +++ + D G + S +G++ + Sbjct: 1520 SKDKQNIIFEAFQQAEGSTSRKYGGTGLGLSISRGLADLLGGSIELESEVGRGSIFTLFL 1579 Query: 809 PL 810 PL Sbjct: 1580 PL 1581 >gi|220907214|ref|YP_002482525.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219863825|gb|ACL44164.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1419 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 121/229 (52%), Gaps = 5/229 (2%) Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AE+ + K +FLA +SHE+R+PL I+G+++++++Q F P + + I+R Sbjct: 1040 QARAEAEQANRVKDEFLAVLSHELRSPLNPILGWTKLLQSQPFSPDKAAKAL---ATIER 1096 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 + L ++ DLLD+S+I GKM L+ V+L + A+ V+L A K I + T Sbjct: 1097 NVKLQAQLIEDLLDVSRILQGKMVLNVTSVNLVSVIEAALETVRLSAETKAIQLETLMEP 1156 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 I IL D ++QI N+L+N + FTP GG++ + + L+V+DTG G+ Sbjct: 1157 EIDPILGDPARLQQIVWNLLTNGVKFTPQGGRVTVRLQRV-DTFAQLQVQDTGKGINAAF 1215 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 L F Q + + G GLGL + + + + + G +P +G Sbjct: 1216 LPHVFDYFRQEDGTTTRKFGGLGLGLAIVRHLTEQHGGTVAA-DSPGEG 1263 >gi|159901168|ref|YP_001547415.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159894207|gb|ABX07287.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 677 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 96/369 (26%), Positives = 171/369 (46%), Gaps = 45/369 (12%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L ++L +T+DGI +I+ + ++L+ N + +LFG+ +I+ + + L + Sbjct: 336 RLQALLNSTTDGILMIDPDDVVLTANPMLGELFGWEWRNIIGEAGSDILARIK------- 388 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLR---IIIKKLPFSSCYS------LTMHDISE 563 + + + ++ T E ++L R + + LP + + + HDI+E Sbjct: 389 -------EQSRVVNELPNSETCEIEVLRPRTRYVRQEPLPVRNNFGNVIGTLIVFHDITE 441 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 Q + + D++ + H++R PLTAII +++ GP+ N + Sbjct: 442 EYQL--------------AQIREDYMGMLVHDLRAPLTAIINGMTMVRRGFAGPI-NDQQ 486 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 E + + S ++ ++N LLDISK+E+G++ L+ P S E V A + A Sbjct: 487 RELLDIANNSSQEMVGMINTLLDISKMEAGELVLNRAPCSAYEIVDRASERLINSARSVD 546 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILR 740 I I A N+P I AD + +I N+L NAI FTP GG + I ++ E + Sbjct: 547 ISINLDMALNLPIIDADQDKIVRILQNLLDNAIKFTPVGGSVTIRVRQLTDNEKQTICWS 606 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D G G+ K F Q+ ++ GTGLGL AK +A+ G+ ++ S + Sbjct: 607 VIDAGPGIPESYRAKIFDKFVQVAGQRK----GTGLGLAFAKLASEAHGGRIWVESVEGE 662 Query: 801 GTLIEIIFP 809 G+ P Sbjct: 663 GSTFSFTIP 671 >gi|16127218|ref|NP_421782.1| sensor histidine kinase/response regulator [Caulobacter crescentus CB15] gi|221236019|ref|YP_002518456.1| hybrid sensor histidine kinase/receiver domain-containing protein [Caulobacter crescentus NA1000] gi|13424622|gb|AAK24950.1| sensor histidine kinase/response regulator [Caulobacter crescentus CB15] gi|220965192|gb|ACL96548.1| hybrid sensor histidine kinase/receiver domain protein [Caulobacter crescentus NA1000] Length = 574 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 116/232 (50%), Gaps = 5/232 (2%) Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 K S KS FLA +SHEIRTP+ ++ ++ + GP + RSG ++ Sbjct: 194 KASEAKSAFLAMISHEIRTPMNGVLAMTDALSRADLGP----DQARQTALLKRSGEDLMT 249 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-L 698 ++ND+LDIS+IE+GK+ + +P L E + + +L A +K + + + A + L Sbjct: 250 LLNDVLDISRIEAGKLEIECQPFDLPELLGDLRALWTPAATDKGLDLVLTIAPGLDAYRL 309 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 D ++QI N++SNA+ FT SGG + + + V+ V DTG+GMT + + + Sbjct: 310 GDPTRLRQILGNLVSNAVKFTRSGGVALSARPGEAPGAVVFDVADTGIGMTPEQQGRLFQ 369 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F Q S R G+GLGL + + G + S G+ + PL Sbjct: 370 SFSQADASIARRFGGSGLGLSICSQLATLMDGAITVDSDLGSGSTFRLTLPL 421 >gi|323706107|ref|ZP_08117676.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534551|gb|EGB24333.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacterium xylanolyticum LX-11] Length = 453 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 128/227 (56%), Gaps = 7/227 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN-PRYIEYANYIDRSGNLVLDIVND 643 +SDF+A VSHE+RTPLT+I GF E + R G + N R + I+ + ++ND Sbjct: 228 RSDFVANVSHELRTPLTSIRGFIETL---REGAIDNIERRDRFLEIIEFEAERLTRLIND 284 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRTSFANNIPRILADLR 702 +L +S+IE+ K E + +DE ++E +++ A +K I LI+ ++ ++ R Sbjct: 285 ILTLSEIENLKEGFVKEDIVIDEEINEIFYIMEKTAEDKNIKLIKDLNCKDVVIKISKDR 344 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 ++Q+ +N++ N I +TP GG + ++TT N +++ V D+G+G++ + + + F + Sbjct: 345 -LRQMIINLVDNGIKYTPEGGYVKVTTTDMENN-IVIEVEDSGIGISKENIPRLFERFYR 402 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + + GTGLGL + K +V++ G + S KGT I+ P Sbjct: 403 VDKGRSRKLGGTGLGLAIVKHIVESMKGSITVESEVGKGTKFAIVLP 449 >gi|294828438|ref|NP_714175.2| histidine kinase/response regulator hybrid protein [Leptospira interrogans serovar Lai str. 56601] gi|293386292|gb|AAN51193.2| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Lai str. 56601] Length = 804 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 77/252 (30%), Positives = 129/252 (51%), Gaps = 10/252 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L +I + ++ + +L AK++AEK S KS+FLA +SHEIRTP+ ++G +++ + Sbjct: 390 LLKKEIQQRRETEWELIQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLGTTKL 449 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 N EY + S +L I+ND+LD SKIE+GK+ L E S+ + E L+ Sbjct: 450 ----NDEQKEYVEVLSVSAKSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLL 505 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--- 731 A +K I R I + D ++QI N+ N I FT S G++++ T Sbjct: 506 YPLAKQKEINFRLEGKLEIQEYVYGDPLRLRQILWNLAGNGIKFT-SRGEVVLKVTQKNI 564 Query: 732 -TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 S+ + V D+G+G+ + ++ + F Q S + G+GLGL + K +V+ G Sbjct: 565 SKSSVSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSITKQLVELQGG 624 Query: 791 KFYIFSTPAKGT 802 + S +G+ Sbjct: 625 VLKLESKDGEGS 636 >gi|189912995|ref|YP_001964884.1| Signal transduction histidine kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|189913322|ref|YP_001964551.1| Putative histidine kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167777671|gb|ABZ95971.1| Signal transduction histidine kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167781390|gb|ABZ99687.1| Putative histidine kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 664 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 85/261 (32%), Positives = 135/261 (51%), Gaps = 26/261 (9%) Query: 558 MHDISEWKQEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 ++D S+ Q +NK L A + A K + KS F ++++HE+RTPL A+IGFS+++ G Sbjct: 306 LNDYSQKIQLQNKRLQKAVEAAIKANQSKSVFFSKITHELRTPLHAVIGFSQIL-----G 360 Query: 617 PLGN-PRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 N P +++ + N + +G +L ++ND+LD+SKIE+GKM E SL + S+ Sbjct: 361 KDPNLPEHLKGFVNSLYENGVHLLGMINDILDLSKIEAGKMTESREKFSLVQLWDTLFSM 420 Query: 675 VQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSG---GQIIIST 729 EK IL I ADL+ ++QI +N+L NA+ FT G ++ I Sbjct: 421 FSYRFAEKHILFELIHPETIKNQYFEADLQKIRQILVNLLGNALKFTNQGFVNMEVKIKQ 480 Query: 730 THTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV--- 785 N +++ V+DTG+G+ +L + F Q + EGTGLGL ++ +V Sbjct: 481 GLEPNIDLVSFIVKDTGIGIPKDQLHSIFEAFQQTEQGSSYQ-EGTGLGLSISHQLVDFL 539 Query: 786 --------DANMGKFYIFSTP 798 D N G +IF P Sbjct: 540 GGTIQVDSDTNQGSTFIFELP 560 >gi|313496503|gb|ADR57869.1| KinB [Pseudomonas putida BIRD-1] Length = 588 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 95/368 (25%), Positives = 171/368 (46%), Gaps = 41/368 (11%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-------PVEDILRKPFTVFLEQNT 505 +L ++L++ DG+ II+R+G + N + G+ + + L++P LEQ Sbjct: 252 RLQAVLDSIDDGLLIIDRQGRLEHLNPVAQRQLGWNDSRVGSSLVEALQRPE---LEQQL 308 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISE 563 V+ SLD + + + + +E +LL+ + P M HD++E Sbjct: 309 RQVLRGG-----SLD--RPPDDLNMEVDEESRLLTYSLTPVSHPQGPILGAVMVLHDVTE 361 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI-IGFSEVIKNQRFGPLGNPR 622 + + +S+F+ R SHE+RTP+T + + F + + +F P R Sbjct: 362 QRAFERV--------------RSEFVLRASHELRTPVTGMHMAFGLLRERVKFPP--EAR 405 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + I + ++NDLL+ S+ +SG L P ++D+ + A A K Sbjct: 406 ENDLLETIGEEMQRLTQLINDLLNFSRYQSGLQKLELAPCAIDDLLEHAQLRFAEQAAHK 465 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 +I + +PRI AD+ + ++ N+L NAI T +GG+I + + E VI+ V Sbjct: 466 QIELIKELDPPLPRIQADVAQLDRVLDNLLHNAIRHTANGGRIRLHARRHA-ERVIISVE 524 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D G G++ + + +PF Q+ + G GLGL L K +V + G+ +FS P +GT Sbjct: 525 DNGEGISYGQQARIFEPFVQVGRKK----GGAGLGLALCKEIVQLHGGRMGVFSRPGQGT 580 Query: 803 LIEIIFPL 810 + P+ Sbjct: 581 QFYMALPV 588 >gi|183220358|ref|YP_001838354.1| putative two-component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910473|ref|YP_001962028.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775149|gb|ABZ93450.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778780|gb|ABZ97078.1| Putative two-component response regulator; putative membrane protein; putative signal peptide [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 1065 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 120/226 (53%), Gaps = 3/226 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +FLA SHE++TPL IIG +E + + G L N + I SG + +V+D+ Sbjct: 429 KDEFLANTSHELKTPLNGIIGIAESMFDGIGGKL-NQEQRQNLGMIVSSGKRLSSLVDDI 487 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD SK+++ ++L + + L + + + + K + +R + + P IL D + Sbjct: 488 LDFSKMKNRDLDLDLKAIDLHQICDFVLVISRPLYVTKNLTVRNNVPIDFPPILGDEARL 547 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +QI NI+ NAI FT G +I +S VI +RDTG+G+ + + F Q+ Sbjct: 548 QQILFNIIGNAIKFTEKG-RIDVSAEIIEKMAVI-SIRDTGIGIPKDKFGDIFRSFEQVD 605 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 S + GTGLGL ++K +V+ + G ++ STPA+G++ PL Sbjct: 606 ASTTRKFGGTGLGLAISKRLVELHGGNIWVESTPAEGSMFSFSLPL 651 >gi|94970530|ref|YP_592578.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94552580|gb|ABF42504.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 1043 Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 99/385 (25%), Positives = 185/385 (48%), Gaps = 43/385 (11%) Query: 442 INKRKMEIEVMQ----LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 I +++ E E+ Q + E ++D I +G IL N GY E++L+KP Sbjct: 663 IARKRAEQEITQNEDRYHYLFENSADLILTFGTDGTILHPNSTWMSTLGYSREELLKKPL 722 Query: 498 TVFL----EQNTPSVMNHYL----TEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKL 548 + + +++ + T+ + L R Q KI + E +S R I + Sbjct: 723 FDLIGPEDRERCKAIIGMIVRSGSTDKVELTFRSQDGRKIVV-----EGTISCRYGITGV 777 Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 + S D+++ ++E +++ K++F++ VSHE+RTPLT+I G Sbjct: 778 EYCSAI---FQDVTK-RREVDRM-------------KNEFISVVSHELRTPLTSIRGSLG 820 Query: 609 VIKNQ--RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 ++ R P R ++ A ++ ++ ++ND+LDI KIESG + L+ +P+ + Sbjct: 821 LLAGGALRKDPEKADRMLDIAL---KNTERLVRLINDILDIEKIESGNIALNVQPLDAAD 877 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 +S+A + + A+ ++ + T I + AD + Q N+LSNAI F+ + Sbjct: 878 LISQASATMHAMADANKVRLETHSTRGI--LYADRDRMLQTLTNLLSNAIKFSKPDNTVT 935 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 IS+ +++RVRD G G+ + +L+ + F Q+ S GTGLGL + +++V Sbjct: 936 ISSQRRGGG-LLIRVRDQGRGIPSNKLQTIFERFQQVDASDSRDKGGTGLGLAICRSIVQ 994 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLY 811 + G ++ S KG+ I+ P + Sbjct: 995 QHGGSIWVDSIDGKGSEFFILLPRF 1019 >gi|254428730|ref|ZP_05042437.1| 7TM diverse intracellular signalling domain protein [Alcanivorax sp. DG881] gi|196194899|gb|EDX89858.1| 7TM diverse intracellular signalling domain protein [Alcanivorax sp. DG881] Length = 927 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 74/249 (29%), Positives = 131/249 (52%), Gaps = 19/249 (7%) Query: 575 KKIAEKES-------SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + IAE E+ KS+FLA +SHEIRTP+ I+G +++++ + +Y Sbjct: 411 RAIAEMEAFKAGARNHAKSEFLATMSHEIRTPMNGIMGMTDLLRRTSM----THQQAQYV 466 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I +S +L ++ND+LD SKIESGK+ L ++P++L+ V + + L L ++EK + + Sbjct: 467 GTIYQSTQSLLTVINDILDYSKIESGKLELDYQPIALENIVDDCVRLFALRSSEKSLPLY 526 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEE----VILRV 741 + +P RI D +KQI N+LSNA FT G + ++ N + +++ V Sbjct: 527 IHIDSRVPERIKTDPIRLKQIITNLLSNAFKFTDRGHVALHVNLKQPVNNKGMCVLMIEV 586 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ + + F + S + + G GLGL + K +++ G + S+ +G Sbjct: 587 VDTGIGLDEGQQSSLFQAFSDL--SAKGKHNGAGLGLVICKRLIELLGGDIGVSSSLGRG 644 Query: 802 TLIEIIFPL 810 + P+ Sbjct: 645 ATFWLSLPV 653 >gi|15614576|ref|NP_242879.1| hypothetical protein BH2013 [Bacillus halodurans C-125] gi|10174632|dbj|BAB05732.1| BH2013 [Bacillus halodurans C-125] Length = 914 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 72/262 (27%), Positives = 128/262 (48%), Gaps = 5/262 (1%) Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 C+S T I ++ +K K+ +KE K FLA SHE+R PL +I ++ + Sbjct: 285 CFS-TFWFIRFFRANDDKADLVTKL-QKEHVKKDQFLANTSHELRNPLHGMINIAQGVVE 342 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 Q G L P + + G + ++NDL+D++K++ K+ L +P +L AV+ + Sbjct: 343 QEGGRLA-PESRQNLELLMTVGRRMSYLLNDLIDVTKMKQKKVTLTKQPTNLLAAVTTVV 401 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 ++ + K + I + ++ P + AD + QI N++ NAI +T G I+ Sbjct: 402 NVQRFMVEAKNLRIEVNIPHDFPLVYADETRLGQILFNLVHNAIKYTEEG--TIVIEAKV 459 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + ++RV+DTG+GM ++ P+ Q G GLGL + + +V + G Sbjct: 460 KKKRAVIRVKDTGIGMDEETQKRIFHPYEQGAKEHYHENGGFGLGLSICRDLVSMHNGTL 519 Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814 + S P+KG++ PL +S Sbjct: 520 AVQSAPSKGSIFTFTLPLASSS 541 >gi|332653702|ref|ZP_08419446.1| sensory box histidine kinase [Ruminococcaceae bacterium D16] gi|332516788|gb|EGJ46393.1| sensory box histidine kinase [Ruminococcaceae bacterium D16] Length = 589 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 88/372 (23%), Positives = 173/372 (46%), Gaps = 31/372 (8%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 R++E E +L ++ +DG+ +R G ++ +N A ++ G + Sbjct: 247 RQVENERNKLDTLFLHMTDGVVAFSRNGEVIHSNPAAEEMLGRTI--------------T 292 Query: 505 TPSVMNHYLTEILSLD-LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 + ++LSL+ + Q + + + E+ L L + + +HD+++ Sbjct: 293 AEATYEELFGDLLSLEQVLQAPDYLEEERWEGERFLQLLLAPFDRDRQGGVLVVLHDVTQ 352 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 ++ ++ + +F+A VSHE+RTPLT I ++E + + G L Sbjct: 353 QRKTQDM--------------QREFVANVSHELRTPLTNIRSYAETLSDSA-GELPPATE 397 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 ++ I + + IV DLL +S+ +SGK LH D AV + + V + A Sbjct: 398 KKFLGVILNESDRMTHIVQDLLTLSRFDSGKDELHLVRFPFDVAVQDLYNAVYMEAQRHD 457 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 ++ ++P ++AD V Q+ +NI+SN+I +TP+GG I++S + V ++V D Sbjct: 458 HKMKLRLEPDLPAVVADRERVLQVMMNIVSNSIKYTPNGGHILVSAGR-EGDRVWMQVDD 516 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 G+G+ + + + F ++ ++ + GTGLGL +AK +VD + G + G Sbjct: 517 DGIGIPPKDRPRIFERFYRVDKARSRQSGGTGLGLSIAKEIVDRHEGVLELVDREGPGLS 576 Query: 804 IEIIFPLYDTSH 815 + + + SH Sbjct: 577 MRMELKIEGPSH 588 >gi|302784310|ref|XP_002973927.1| hypothetical protein SELMODRAFT_100347 [Selaginella moellendorffii] gi|300158259|gb|EFJ24882.1| hypothetical protein SELMODRAFT_100347 [Selaginella moellendorffii] Length = 320 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 75/274 (27%), Positives = 126/274 (45%), Gaps = 23/274 (8%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 SL + + + +L +K+ AE S KSDFLA +SHEIRTP+ I+G S ++ Sbjct: 40 SLVLQRTHQLVKANEELQTSKQAAELASQAKSDFLANMSHEIRTPIHGILGMSALV---- 95 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 G E + L+L I+N +LD+ KIE+G+ + +L + + + Sbjct: 96 LGTSLTDEQKENMTTVSECAELLLHIINSILDLGKIEAGRFEVELISFNLHHVLKSTVHI 155 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-- 731 +Q A + + + +P L D ++Q LN++ NA+ FTP G + + H Sbjct: 156 LQPRAQAHNLRLSYEIDSAVPEFLVGDSGKLRQCLLNLVGNALKFTPEGEVRVEVSVHRF 215 Query: 732 ----------------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 + E++L + D+G+G++ +L+ KPF Q S GTG Sbjct: 216 GMQDDSVLSRLNASQWSDMSEMMLEISDSGIGISKNKLKDVFKPFTQADASISRLYGGTG 275 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 LGL + + V+ G + S KG+ I+ P Sbjct: 276 LGLCVVQRFVELMGGHILVESEYGKGSSFYIVLP 309 >gi|296104779|ref|YP_003614925.1| two-component system, NarL family, sensor histidine kinase EvgS [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059238|gb|ADF63976.1| two-component system, NarL family, sensor histidine kinase EvgS [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 1062 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 126/244 (51%), Gaps = 9/244 (3%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK+ AE+ KS FLA +SHEIRTP++AIIG E++ + NP+ I A Sbjct: 559 LRAAKQRAERARRGKSAFLATMSHEIRTPVSAIIGMLELVMKRPDHAPQNPQSIRVA--W 616 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 D + +L+L ++ ++LD+ +I SG++ L E SL + +S + A +K + + Sbjct: 617 DAAQSLLL-LIGNILDVERIASGRLVLRPERASLRNLIEGTVSQFEGLAAQKSLKLMLEM 675 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTGV 746 + +L D+ +QI N+L NAI FT G ++ + N E + L + DTG Sbjct: 676 DTALKGDVLIDVMRFRQIVTNLLGNAIKFTDHGQVMLRAQPQWQNGEFMLLELTIADTGE 735 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ ++ +PF Q + R +G+GLGL + + + D G + S P +GT + + Sbjct: 736 GIDIATQQRLFQPFSQ--GESRTRAQGSGLGLYICRQLADMMDGDLTLNSVPGEGTTVTV 793 Query: 807 IFPL 810 L Sbjct: 794 TLRL 797 >gi|260775446|ref|ZP_05884343.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio coralliilyticus ATCC BAA-450] gi|260608627|gb|EEX34792.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio coralliilyticus ATCC BAA-450] Length = 1128 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 75/259 (28%), Positives = 129/259 (49%), Gaps = 12/259 (4%) Query: 565 KQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 KQ+ +L K+ +K++ K +FLA SHE+RTPL ++G +E + + GP Sbjct: 433 KQQNEELESNLKLIQKQNDELQLANKLKDEFLATTSHELRTPLHGMVGIAEALISGANGP 492 Query: 618 L-GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + +Y + I SG + +V+DLLD K+ G +++ V + A + L Sbjct: 493 ITADHKY--QLDIIISSGQRLATLVDDLLDYHKMRYGNLDIETRAVDISGATRLVLELST 550 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 K I I N+ + AD + ++Q+ N++ NAI +T S G+I+IS T ++ Sbjct: 551 HLVGNKPIRIINQVPNDPLWVCADPQRLEQVLYNLVGNAIKYT-SEGKIVISATQV-DDN 608 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + ++V DTG G+ +LE +P Q + +G GLGL +++ ++D G Y+ S Sbjct: 609 IRVQVVDTGQGIPAEQLEHIFEPLIQAGSDSSRYRQGAGLGLSISRQLIDLMQGTLYVSS 668 Query: 797 TPAKGTLIEIIFPLYDTSH 815 P GT P+ T Sbjct: 669 QPMVGTTFSFTLPIASTEQ 687 >gi|260596161|ref|YP_003208732.1| aerobic respiration control sensor protein ArcB [Cronobacter turicensis z3032] gi|260215338|emb|CBA27320.1| Aerobic respiration control sensor protein arcB [Cronobacter turicensis z3032] Length = 779 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 130/246 (52%), Gaps = 14/246 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+E K+ ++ L E+ S K+ F++ +SHE+RTPL I+G S ++ + Sbjct: 264 RDITERKRYQDAL-------ERASRDKTTFISTISHELRTPLNGIVGLSRILLDTDL--- 313 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + +Y I S + +I ND++D+ KIE K+ L +PV +++ +L L Sbjct: 314 -SAEQEKYLKTIHVSAVTLGNIFNDIIDMDKIERRKVQLDNQPVDFTSFLADLENLSGLQ 372 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A +K + +P ++L D ++QI N++SNA+ FT GQ+ + ++ NE++ Sbjct: 373 AQQKGLRFVMEPVRPVPHKVLTDGTRLRQILWNLISNAVKFTQQ-GQVTVRVSYNDNEQL 431 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKFYIFS 796 V D+G+G+ E +K + Q+ +SQ + GTG+GL +++ + + G + S Sbjct: 432 RFEVEDSGIGIPQEEQDKIFAMYYQVKDSQGGKPATGTGIGLAVSRRLAKSMGGDITVSS 491 Query: 797 TPAKGT 802 P +G+ Sbjct: 492 KPGQGS 497 >gi|149925352|ref|ZP_01913616.1| hypothetical tryptophan-rich sensor protein [Limnobacter sp. MED105] gi|149825469|gb|EDM84677.1| hypothetical tryptophan-rich sensor protein [Limnobacter sp. MED105] Length = 752 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 123/246 (50%), Gaps = 14/246 (5%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E S KS FLA +SHEIRTPL AI+GF+ ++ +Q + +P+ EY + + +L Sbjct: 374 ESASKEKSQFLANMSHEIRTPLNAILGFNSLLGDQ----VRDPQSKEYVKQVREASEQLL 429 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +V D+L S+IE+G + + L E V + L A K + + P ++ Sbjct: 430 GMVEDVLSFSQIEAGSIKIESVEFDLHERVRRTLRLFTAKAQHKGLDLELEIDAMTPLLV 489 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELE 754 D Q+ N+L+NAI F+ SG ++ + + ++R V D G+G E E Sbjct: 490 NGDPARYGQVLSNLLNNAIKFSDSGVVRVKVQADRLDTQGAVIRTEVHDQGIGFDVSEFE 549 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL------IEIIF 808 + +PF Q N+ R G+GLGL + K + + G+ ++ S P G++ ++ +F Sbjct: 550 RLTRPFEQADNTATRRFGGSGLGLAICKRLTELMGGELFVASVPQAGSVFGFTLQVKTVF 609 Query: 809 PLYDTS 814 D++ Sbjct: 610 AQVDST 615 >gi|269926600|ref|YP_003323223.1| GAF sensor signal transduction histidine kinase [Thermobaculum terrenum ATCC BAA-798] gi|269790260|gb|ACZ42401.1| GAF sensor signal transduction histidine kinase [Thermobaculum terrenum ATCC BAA-798] Length = 579 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 129/244 (52%), Gaps = 6/244 (2%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 E+ K A K A+K +S L VSHE+RTP+ AI GF+ +K + ++ Sbjct: 339 EEAKTIEAAKEADK---LRSQLLGTVSHELRTPIAAIQGFASSLKCADEVEIPKEMQQDW 395 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 N I+++ + +V DLLD+S++ESG + + E +++ + E +Q+ A + +++ Sbjct: 396 INEIEQNAERLRRLVTDLLDLSRLESGALRMQMEWQDMNDVLDELAPDLQMIAEGRNLVV 455 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 + S + +P I D + Q+ N++ NA F+P G I++ N + + V D G Sbjct: 456 QVS--DTLPLIKCDAERIGQVLRNLVENARKFSPPGSNIVVGAERYENG-IRVGVLDEGE 512 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +K + F QI + +GTGLGL + + +V+A+ G+ ++ S+P KG++ Sbjct: 513 GIPPEYHDKIFERFFQIEGASFRPQKGTGLGLAICRNIVEAHGGRIWVESSPGKGSIFYF 572 Query: 807 IFPL 810 P+ Sbjct: 573 TLPV 576 >gi|254187078|ref|ZP_04893593.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei Pasteur 52237] gi|157934761|gb|EDO90431.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei Pasteur 52237] Length = 770 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 100/380 (26%), Positives = 172/380 (45%), Gaps = 23/380 (6%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +R+ L ++EA+ D I + I S N A ++FGY ++ + V + Sbjct: 246 ERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGY--DEHAARGCDVAMLI 303 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSC--YSLT 557 + NH L E + D+R+ +E + + +++ +R + P +C SLT Sbjct: 304 APRWLRNHPLPESVP-DMREPIENVDVLCVRQDGG-RMRATMSASPVFDERDACIALSLT 361 Query: 558 MHDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + D E ++ + A++ A+ + K + LA VSHE+RTPL I G+ EV+ Sbjct: 362 LRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVL 421 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +N P+ + + IDRS + +V D+LD S + +GK+ L PV L V++ Sbjct: 422 RN----PVDGALQQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVND 477 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + A I + A + D ++Q+ N+LSNA FTP GG++ +S Sbjct: 478 VTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLE 537 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + L V DTG G++ L + F + + G GLGL + + + + + G Sbjct: 538 R-HDAQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGG 596 Query: 791 KFYIFSTPA-KGTLIEIIFP 809 K S +GT I P Sbjct: 597 KVEAASAGKNRGTTFAITLP 616 >gi|153833234|ref|ZP_01985901.1| signal transduction histidine kinase [Vibrio harveyi HY01] gi|148870505|gb|EDL69420.1| signal transduction histidine kinase [Vibrio harveyi HY01] Length = 1200 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 85/273 (31%), Positives = 136/273 (49%), Gaps = 22/273 (8%) Query: 554 YSLTMHD-ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 Y +T+ D ISE KQ++ L + A + + FLA VSHE+RTP+ A++G E+++ Sbjct: 636 YRMTVFDDISELKQKETALKASNLKAMQAIEAREHFLAVVSHELRTPIAAMMGLMELLEQ 695 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 L E +S + VND+LD SKI++ ++ L ++ + + + Sbjct: 696 D----LERKESKELLKSAMQSAERLQLQVNDILDFSKIDANQLQLDVHKGNVYQELGATL 751 Query: 673 SLVQLYANEKRILIRTSFA---NNIPR----ILADLRSVKQIALNILSNAIHFTPSGGQI 725 + ++I+ R S A N P ++ D V QI N+LSNA+ FT G Sbjct: 752 R------SFEKIIERKSLAFELNWTPTPHALVVLDWLRVSQIINNLLSNAVKFTEEGN-- 803 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 +I + H S ++ +V+DTG GM + +L +PF Q S R GTGLG+ + K++V Sbjct: 804 VIVSVHVSPTQLEFKVQDTGCGMNSAQLATLFQPFVQGDKSTSRRFGGTGLGMSIVKSLV 863 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 D G + S +GT I + P+ S P D Sbjct: 864 DIMEGTIEVDSQTEQGTTITVRLPM--ISQPLD 894 >gi|138895847|ref|YP_001126300.1| two-component sensor histidine kinase [Geobacillus thermodenitrificans NG80-2] gi|196248739|ref|ZP_03147439.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] gi|134267360|gb|ABO67555.1| Two-component sensor histidine kinase [Geobacillus thermodenitrificans NG80-2] gi|196211615|gb|EDY06374.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] Length = 598 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 99/363 (27%), Positives = 165/363 (45%), Gaps = 32/363 (8%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 QL SIL + +DG+ +REG IL TN P E L+ + F + N M Sbjct: 259 QLASILSSMADGVITFSREGEILITNP--------PAERFLQAWY--FEQGNDAETMAPL 308 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 ++ L R +EEK S + I+ + + M + + ++ Sbjct: 309 PPQVKELFAR---------VVREEKEQSTEVTIQ----GRTWVILMTPLYGKTMVRGAVA 355 Query: 573 HAKKIAEKESSHK--SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + + E+ K DF+A VSHE+RTP+ + G+SE I + + + Y Sbjct: 356 VLRDMTEERRLDKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAASEEEKKEMAKVIYD 415 Query: 631 D--RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + R G L VNDLLD++++E+G + L +E V L V I A EK+I + Sbjct: 416 ESLRMGRL----VNDLLDLARMEAGHIELQYEQVELVPYVERVIRKFYGLAKEKQIELTA 471 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 F + I D ++Q+ N++ NAI T +GG + + S + V + V+D+G G+ Sbjct: 472 EFRDENIEIAFDPDRIEQVLTNLIDNAIRHTEAGGTVRL-IIERSGDGVTIHVQDSGSGI 530 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L + F + ++ GTGLGL +AK +V+ + G+ + S +GT Sbjct: 531 PEEDLPFVFERFYKADKARTRGRSGTGLGLAIAKNIVETHKGRITVHSKLNEGTTFSFYL 590 Query: 809 PLY 811 P + Sbjct: 591 PAH 593 >gi|117168610|gb|ABK32275.1| Amb7 [Sorangium cellulosum] Length = 2087 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 81/270 (30%), Positives = 137/270 (50%), Gaps = 17/270 (6%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KNQRFGPLGNP 621 E +Q + L + S +KS+FLA +SHE+RTPL +++ S+ + KN G Sbjct: 1383 EVEQARQALEEKARQLAITSKYKSEFLANMSHELRTPLNSLLILSDQLSKNNDRNLTG-- 1440 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 R +E+A I SGN +L ++ND+LD+SKIESG + + +S + + A Sbjct: 1441 RQVEFAKTIHSSGNDLLALINDILDLSKIESGTVIVDVGELSFSDLQDYVERTFRHVAES 1500 Query: 682 KRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHTSNE 735 K++ +FA N+P+++ D + V+Q+ N+LSN+ FT G ++ S NE Sbjct: 1501 KKLEFELNFAQNLPQVIYTDAKRVQQVLKNLLSNSFKFTERGSVALDVDLVTSGWAPENE 1560 Query: 736 -------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + + VRDTG+G+ + + + + F Q S + GTGLGL +++ + Sbjct: 1561 GLSRAGAAIAMSVRDTGIGIPHDKQQIIFEAFQQADGSTSRKYGGTGLGLAISREIAWML 1620 Query: 789 MGKFYIFSTPAKGTLIEIIFPL-YDTSHPH 817 G+ + S P G+ + PL Y + P Sbjct: 1621 GGEIKLSSKPGSGSSFTLYLPLTYTPARPR 1650 >gi|134298576|ref|YP_001112072.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] gi|134051276|gb|ABO49247.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] Length = 453 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 68/213 (31%), Positives = 120/213 (56%), Gaps = 5/213 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVND 643 +++F+A VSHE+RTPLT+I GF E + + G + P + I G + +I++D Sbjct: 230 RTEFVANVSHELRTPLTSINGFVETLLD---GAIEEPIIARNFLEIISAEGKRLANIIDD 286 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 LL +S++E + L+ +PV L E + I++ + A EK I I T + +P + D Sbjct: 287 LLKLSRLEDRRTKLNKQPVDLAEVIGNTITMFEGRALEKNIQITTEISPKLPLVPGDQGF 346 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 + Q+ +N++ NAI +T +GG + IS + EV + V DTG+G+ + + + F ++ Sbjct: 347 LSQVMINLVDNAIKYTLTGGTVHISVKFNEH-EVTVTVSDTGIGIPIESIPRVFERFYRV 405 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 ++ GTGLGL + K +++A+ GK + S Sbjct: 406 DKARSREMGGTGLGLSICKHIMEAHGGKIRVES 438 >gi|326424155|ref|NP_761988.2| sensory box sensor histidine kinase/response regulator VieS [Vibrio vulnificus CMCP6] gi|319999539|gb|AAO11515.2| Sensory box sensor histidine kinase/response regulator VieS [Vibrio vulnificus CMCP6] Length = 1254 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 85/269 (31%), Positives = 131/269 (48%), Gaps = 7/269 (2%) Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 RI +K C +DI+E + + L A AEK + FLA +SHE+RTP+ Sbjct: 628 RIPVKINRIERCVLTIANDITEERANQQLLIEANTKAEKAVQARQMFLATMSHELRTPIA 687 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 ++G E++ ++ + + + I S + +VND+LD SK+ES ++ + E Sbjct: 688 GMMGLLEMVTSKT----EDKESLFLLDQISASAKNLNFLVNDILDFSKLESNQVVICNEE 743 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTP 720 S+ A+ E++ + A K + + AN+I I D + QI N+L+NAI FT Sbjct: 744 TSILTALCESLRGHYVAARNKGLNFELDWPANDIKTINIDFLRLNQIINNLLTNAIKFTH 803 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 G + +E + + V DTGVGMT + E PF Q NS + GTGLGL + Sbjct: 804 KG--TVRVQVSLESERIQIIVADTGVGMTQEQKENVFLPFVQADNSITRKYGGTGLGLSI 861 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +V G +I ST GT I + P Sbjct: 862 VHDLVSLMGGTIFINSTLGLGTEITVSMP 890 >gi|229084388|ref|ZP_04216668.1| hypothetical protein bcere0022_10280 [Bacillus cereus Rock3-44] gi|228698928|gb|EEL51633.1| hypothetical protein bcere0022_10280 [Bacillus cereus Rock3-44] Length = 441 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 130/251 (51%), Gaps = 10/251 (3%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 NK++H+ E E + + +FLA VSHE+RTPL+ I G+SE I + G + ++ Sbjct: 201 NKMAHS---LETEDAKRKEFLANVSHELRTPLSYIKGYSEAILD---GVAKGEQQSKFMQ 254 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I + + +V+DLLD++++E L +P+ + + + + +L EK++ I Sbjct: 255 LIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFAQLIEDVLETYELKWTEKQLRISK 314 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 +I ++ D ++Q+ N+L NAI +T G I I N LR+ DTG+G+ Sbjct: 315 DLDPDII-VMIDEDRMQQVLHNLLDNAIRYTNQNGSIAIRLEKKDNS-CELRIEDTGIGI 372 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + LE+ + F ++ ++ + GTGLGL + K +V + G++ + S KGT +I Sbjct: 373 DSEHLEQLGERFYRVDKARSRQHGGTGLGLAIVKQIVYIHEGEWQVESEKGKGT--TVII 430 Query: 809 PLYDTSHPHDC 819 LY C Sbjct: 431 TLYMKEEGSMC 441 >gi|45659014|ref|YP_003100.1| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602259|gb|AAS71737.1| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 822 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 77/252 (30%), Positives = 129/252 (51%), Gaps = 10/252 (3%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 L +I + ++ + +L AK++AEK S KS+FLA +SHEIRTP+ ++G +++ + Sbjct: 408 LLKKEIQQRRETEWELIQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLGTTKL 467 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 N EY + S +L I+ND+LD SKIE+GK+ L E S+ + E L+ Sbjct: 468 ----NDEQKEYVEVLSVSAKSLLQIINDILDFSKIEAGKVILEREVFSIRSVLDEIHDLL 523 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--- 731 A +K I R I + D ++QI N+ N I FT S G++++ T Sbjct: 524 YPLAKQKEINFRLEGKLEIQEYVYGDPLRLRQILWNLAGNGIKFT-SRGEVVLKVTQKNI 582 Query: 732 -TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 S+ + V D+G+G+ + ++ + F Q S + G+GLGL + K +V+ G Sbjct: 583 SKSSVSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSITKQLVELQGG 642 Query: 791 KFYIFSTPAKGT 802 + S +G+ Sbjct: 643 VLKLESKDGEGS 654 >gi|24375923|ref|NP_719966.1| response regulator/sensor histidine kinase [Shewanella oneidensis MR-1] gi|24350905|gb|AAN57410.1|AE015877_1 response regulator/sensor histidine kinase [Shewanella oneidensis MR-1] Length = 1141 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 126/251 (50%), Gaps = 10/251 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +I++ + +N L+ AK+ AE + K++FLA +SHEIRTP+ ++G +E + F PL Sbjct: 536 QEINKRRIVENALAIAKENAELATKRKAEFLAAMSHEIRTPMNGLVGMAEQLS---FTPL 592 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 G + + I +L I+N++LD SKI+ GKM L P+ L E + +++V Sbjct: 593 GIEQK-QMVQIISNGAEEILQIINNILDFSKIDMGKMRLESTPILLREVLDSTLNMVMND 651 Query: 679 ANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736 K + + + R+ D +KQI N +SNAI FT G I +S + EE Sbjct: 652 LRTKDLSLYLHVDQGVAARVTGDSLRIKQILFNWVSNAIKFTERGF-IEVSVKLEAEEEG 710 Query: 737 ---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +++ V+DTG+GM + F Q S G GLGL ++ + + G Sbjct: 711 QQLLLIGVQDTGIGMNADTQARIFNIFEQADVSTTRSYGGAGLGLAISHTLAEMMGGDII 770 Query: 794 IFSTPAKGTLI 804 + S P GT I Sbjct: 771 LNSAPHLGTFI 781 >gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] gi|300075462|gb|ADJ64861.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1160 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 131/239 (54%), Gaps = 4/239 (1%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ + +KS+FLA +SHE+RTPL + + ++++ + + G L + + + +A I +GN +L Sbjct: 469 ERANQYKSEFLANMSHELRTPLNSTLILAKLLADNKQGNLSDEQ-VRFAQTISSAGNDLL 527 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RI 697 ++ND+LD+SK+E+GK+++ E L + E + + A +K + + +P R+ Sbjct: 528 ALINDILDLSKMEAGKLDIVPESFPLTKLADELSASFAITAQQKGLGFKVEVEPGVPQRM 587 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D++ + QI N+LSNAI FT G++ + + + VRDTG+G+ + + Sbjct: 588 ETDIQRLGQILKNLLSNAIKFTEK-GEVSLRIYPDAGGRIAFAVRDTGIGIGEDQHQFIF 646 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF-PLYDTSH 815 + F Q S + GTGLGL +++ + G + S +G++ + PLY + Sbjct: 647 EAFRQADGSTHRKYGGTGLGLSISRDLAHLLGGDIRVTSRLGEGSIFTLSLPPLYSSEQ 705 >gi|289665858|ref|ZP_06487439.1| two-component system sensor protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 946 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 84/265 (31%), Positives = 127/265 (47%), Gaps = 25/265 (9%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPRYIEYANYID 631 A+ AE S K +FLA +SHE+RTPL AI+G+S ++++ LG I I+ Sbjct: 551 ARGQAEHASRVKDEFLATLSHELRTPLNAILGWSRLMQSDVAESANLGRGLVI-----IE 605 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF- 690 RS I++DLLD+S I SGK+ L E + V + L+Q A + I + Sbjct: 606 RSARAQKQIIDDLLDMSAIMSGKIRLQAEHFDIAGLVRSTLELMQPTALARGIALELDAP 665 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + D ++Q+ N+LSNA+ FTP+GG + ++ +E + L V+DTG+G+ Sbjct: 666 CDGELWFFGDAGRLQQVLTNLLSNALKFTPTGGTVRVAMD-IEDERLRLCVQDTGIGIAA 724 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 L F Q R G GLGL +++ +VD + G S +G L I+ P Sbjct: 725 EFLPHVFDRFRQADAGTTRRVGGLGLGLSISRQLVDLHGGSLGASSAGEGQGALFTIVLP 784 Query: 810 L-----------YDTSH----PHDC 819 DT+H P DC Sbjct: 785 FRNGVSDLRPASADTAHAGTLPDDC 809 >gi|212634796|ref|YP_002311321.1| sensor protein LuxQ [Shewanella piezotolerans WP3] gi|212556280|gb|ACJ28734.1| Sensor protein LuxQ [Shewanella piezotolerans WP3] Length = 582 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 126/236 (53%), Gaps = 15/236 (6%) Query: 581 ESSHKS--DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ESS +S DF+A ++HE+RTPL ++G +E++ + + + N + +SG L+ Sbjct: 212 ESSEQSTRDFVAMINHELRTPLNGLLGSAELMLDTKLSSYQQ----QLLNTMHQSGELLR 267 Query: 639 DIVNDLLDISKIESGKMNL---HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 I+NDLLD+SK+ +G + + F P L + + + + E ++ + NIP Sbjct: 268 VIINDLLDLSKMSAGMLQIVEVDFSPAKLCQMI---FDIFKQRIEEFGLIFSFNVQQNIP 324 Query: 696 R-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 + +L D +KQI +N++ NA+ FT G +I ++ T E++ V+DTG G+ ++ Sbjct: 325 QTLLGDPDRIKQILVNLIGNALKFTQEG-EIKVNITW-EQEKLHFEVQDTGCGIPEDKIS 382 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 PF Q+ NS EGTGLGL + K +VD + S KG+ ++ PL Sbjct: 383 TLFAPFTQVNNSSNRSFEGTGLGLAICKQLVDEMNDTISLASVLNKGSCFKVALPL 438 >gi|297580226|ref|ZP_06942153.1| sensor histidine kinase LuxQ [Vibrio cholerae RC385] gi|297535872|gb|EFH74706.1| sensor histidine kinase LuxQ [Vibrio cholerae RC385] Length = 857 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 75/262 (28%), Positives = 135/262 (51%), Gaps = 9/262 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ + + + A++ AE+ + +++FLA++SHE+RTPL ++G S+++K PL Sbjct: 454 QDITTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRT---PL 510 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N E+ + SG +L ++ND+LD S++E GK + L E V + + Sbjct: 511 -NDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPL 569 Query: 679 ANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-- 735 +EK + L+ S + +D + QI N+L+NAI FT G I + + Sbjct: 570 CHEKGLELVVNSNITTATIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGDPL 628 Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +++++V DTG+G+ +L +PF Q ++ G+GLGL + ++V+ G+ ++ Sbjct: 629 AQLVIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHV 688 Query: 795 FSTPAKGTLIEIIFPLYDTSHP 816 S GT EI P+ P Sbjct: 689 SSEYGIGTRFEIQLPIELVERP 710 >gi|301022435|ref|ZP_07186317.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 69-1] gi|300397536|gb|EFJ81074.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 69-1] Length = 593 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 92/398 (23%), Positives = 187/398 (46%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 214 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 273 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 274 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 326 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 327 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 381 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q + + EY + + + + + ++ LL+ S+ Sbjct: 382 AHEVRNPLTAIRGYVQILRQQTSDLI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 437 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 438 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELNPINADRELLKQVLLNIL 493 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 494 INAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFF------TTKAS 547 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 548 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 585 >gi|124262616|ref|YP_001023086.1| putative sensor/response hybrid [Methylibium petroleiphilum PM1] gi|124261862|gb|ABM96851.1| putative sensor/response hybrid [Methylibium petroleiphilum PM1] Length = 527 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 78/240 (32%), Positives = 127/240 (52%), Gaps = 14/240 (5%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTPL ++G +E++ Q+ G L + + + +S ++ ++ND+ Sbjct: 2 KSRFLATMSHEIRTPLNGVVGAAELL--QKNG-LSEREKAQMVSLLTQSSRALMALINDI 58 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRS 703 LD SK++ GK+ + P++L V E+ L A K I + +S ++PR L D Sbjct: 59 LDWSKLDVGKVMIERHPINLRALVFESNELFAAQAANKDIELTSSCNPDVPRTLHGDPTR 118 Query: 704 VKQIALNILSNAIHFTPSGG--------QIIISTTHTSNEEVILR--VRDTGVGMTNYEL 753 ++QI N++SNA+ FT GG I S H + +R V DTG+G++ +L Sbjct: 119 IRQIVNNLVSNAVKFTERGGVHIHLSIDGIDPSERHQEGDPRTVRIEVSDTGIGISPEKL 178 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 K K F Q S GTGLGL +++ + + G+ + STP G++ + P+ T Sbjct: 179 GKLFKAFSQGDVSVTRNFGGTGLGLVISQELANLMGGRIEVSSTPGVGSVFTALLPMIAT 238 >gi|76817567|ref|YP_336536.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1710b] gi|254264305|ref|ZP_04955170.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1710a] gi|76582040|gb|ABA51514.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1710b] gi|254215307|gb|EET04692.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1710a] Length = 769 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 100/380 (26%), Positives = 172/380 (45%), Gaps = 23/380 (6%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +R+ L ++EA+ D I + I S N A ++FGY ++ + V + Sbjct: 245 ERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGY--DEHAARGCDVAMLI 302 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSC--YSLT 557 + NH L E + D+R+ +E + + +++ +R + P +C SLT Sbjct: 303 APRWLRNHPLPESVP-DMREPIENVDVLCVRQDGG-RMRATMSASPVFDERDACIALSLT 360 Query: 558 MHDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + D E ++ + A++ A+ + K + LA VSHE+RTPL I G+ EV+ Sbjct: 361 LRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVL 420 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +N P+ + + IDRS + +V D+LD S + +GK+ L PV L V++ Sbjct: 421 RN----PVDGALQQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVND 476 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + A I + A + D ++Q+ N+LSNA FTP GG++ +S Sbjct: 477 VTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLE 536 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + L V DTG G++ L + F + + G GLGL + + + + + G Sbjct: 537 R-HDAQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGG 595 Query: 791 KFYIFSTPA-KGTLIEIIFP 809 K S +GT I P Sbjct: 596 KVEAASAGKNRGTTFAITLP 615 >gi|330720730|gb|EGG98957.1| hypothetical protein imdm_1687 [gamma proteobacterium IMCC2047] Length = 512 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 126/233 (54%), Gaps = 13/233 (5%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K+DFLA +SHE+RTP++ ++G +I++ + +Y + ++ N +L+I++D+ Sbjct: 2 KTDFLATMSHELRTPMSGLLGVINLIRDTE----PTEKQDKYLDTLEVISNTLLEILDDI 57 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRS 703 L S+IE+GK+ + L V + +S+++ A++K I + ++PR+L D Sbjct: 58 LGYSQIEAGKLVVANADFDLHTLVEDMVSVLKPVADKKNIYLSADIEADVPRMLYGDAGK 117 Query: 704 VKQIALNILSNAIHFTPSGG-QIIIST---THTSNEEVILRVRDTGVGMTNYELEKAMKP 759 ++QI LNI+ N I FT GG ++ + TH + ++ R+ DTG+G+ + + Sbjct: 118 LRQILLNIIGNGIKFTREGGVRLNVKAQPDTHGDDLRLLFRIEDTGIGIPKKLQKNVFEA 177 Query: 760 F--GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F G I SQQ GTGLGL + K +V G+ STP G++ P Sbjct: 178 FNQGMISISQQYG--GTGLGLAICKRLVTLLEGEVSCTSTPGVGSVFYFELPF 228 >gi|170741718|ref|YP_001770373.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168195992|gb|ACA17939.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 984 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 124/230 (53%), Gaps = 7/230 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHE+RTPL+A+IG++E+++ + LG + I+ + +L ++ND+ Sbjct: 486 KSQFLANMSHELRTPLSAVIGYAEMLQEE-MEDLGASALLPDMRKIEANARHLLGLINDV 544 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLV-QLYANEKRILIRTSFANNIPRILADLRS 703 LDISKIE+ +M ++ E + + + + V L A + L+ A + R D+ Sbjct: 545 LDISKIEAERMEVYAEDFDVAATLQDVGATVGSLIAKKDNALV-LDLAEGLGRAHTDVTK 603 Query: 704 VKQIALNILSNAIHFTPSGGQIIIST---THTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 ++Q +N+LSNA FT GG+I++S + + RV DTG+GM+ + + + F Sbjct: 604 LRQCLINLLSNAAKFT-EGGRIVLSAERLRRDGRDRLRFRVADTGIGMSAEQQARLFERF 662 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 Q S R GTGLGL + +A V+ G + S +GT I P+ Sbjct: 663 TQADASTTRRFGGTGLGLAITRAFVEMLGGAIAVESRAGEGTTFTIELPV 712 >gi|124382909|ref|YP_001025091.1| sensory box histidine kinase/response regulator [Burkholderia mallei NCTC 10229] gi|254205387|ref|ZP_04911740.1| sensory box histidine kinase/response regulator [Burkholderia mallei JHU] gi|147754973|gb|EDK62037.1| sensory box histidine kinase/response regulator [Burkholderia mallei JHU] gi|261827034|gb|ABM99494.2| sensory box histidine kinase/response regulator [Burkholderia mallei NCTC 10229] Length = 772 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 100/380 (26%), Positives = 172/380 (45%), Gaps = 23/380 (6%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +R+ L ++EA+ D I + I S N A ++FGY ++ + V + Sbjct: 246 ERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGY--DEHAARGCDVAMLI 303 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSC--YSLT 557 + NH L E + D+R+ +E + + +++ +R + P +C SLT Sbjct: 304 APRWLRNHPLPESVP-DMREPIENVDVLCVRQDGG-RMRATMSASPVFDERDACIALSLT 361 Query: 558 MHDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + D E ++ + A++ A+ + K + LA VSHE+RTPL I G+ EV+ Sbjct: 362 LRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVL 421 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +N P+ + + IDRS + +V D+LD S + +GK+ L PV L V++ Sbjct: 422 RN----PVDGALQQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVND 477 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + A I + A + D ++Q+ N+LSNA FTP GG++ +S Sbjct: 478 VTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLE 537 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + L V DTG G++ L + F + + G GLGL + + + + + G Sbjct: 538 R-HDAQAKLTVADTGHGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGG 596 Query: 791 KFYIFSTPA-KGTLIEIIFP 809 K S +GT I P Sbjct: 597 KVEAASAGKNRGTTFAITLP 616 >gi|325522177|gb|EGD00827.1| signal transduction histidine kinase with CheB and CheR activity [Burkholderia sp. TJI49] Length = 1219 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 76/257 (29%), Positives = 124/257 (48%), Gaps = 4/257 (1%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK--NQ 613 L DI K+ A+ AE+ ++ K +FL VSHE+R PL I G++ V+ ++ Sbjct: 819 LAFQDIDALKRALGTAQAARTEAERANTAKDNFLGLVSHELRAPLNVISGWAAVLATASE 878 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 R P I R L ++++DLLD+S+I SG+ +L +P V + Sbjct: 879 RGMPADEQMSQRAVTTIMRHCQLQAELIDDLLDVSRISSGRFSLDTKPADFAAIVQTVVE 938 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + A K I + T+ N + D R ++Q+A N++ NA+ FTP GG++ ++ T Sbjct: 939 SNRPVAARKEISLATAGLNARAVVSGDARRLQQVASNLIGNALKFTPQGGRVEVALTRLG 998 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + L V D G+G++ +L F Q S+ G GLGL + K +V A+ G Sbjct: 999 T-MLELSVTDNGIGVSAEQLPYLFDRFMQSDTSRTRNYGGLGLGLSIVKHLVTAHGGTVT 1057 Query: 794 IFS-TPAKGTLIEIIFP 809 S +GT + + P Sbjct: 1058 ASSEGEGRGTRLTVRLP 1074 >gi|311068828|ref|YP_003973751.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942] gi|310869345|gb|ADP32820.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942] Length = 595 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 103/372 (27%), Positives = 175/372 (47%), Gaps = 36/372 (9%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 QL +IL + +DG+ IN +G IL TN P E L+ + EQN MN Sbjct: 254 QLSNILSSMADGVITINIDGTILVTNP--------PAERFLQ---AWYYEQN----MNVQ 298 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 + L + ++ + T+ + KE+ +I+ + L M + + ++ Sbjct: 299 ADDHLPPEAKELFQN-TVNTEKEQ-------MIEMTLQGRSWVLLMSPLYAQSHVRGAVA 350 Query: 573 HAKKIAEKESSHK--SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + + E+ K DF+A VSHE+RTP++ + G+SE I + + + I Y Sbjct: 351 VLRDMTEERRLDKLREDFIANVSHELRTPISMLQGYSEAIVDDIASSEDDRKEIAQIIYD 410 Query: 631 D--RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + R G LV NDLLD++++ESG LH+ V+LDE + + A EK I + Sbjct: 411 ESLRMGRLV----NDLLDLARMESGHTALHYVKVNLDEFLEKIFRKFSGVAKEKNISLTD 466 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + N D ++Q+ N++ NA+ T SGG + I+ + + + + V+D+G G+ Sbjct: 467 DISLNETEFAFDEDKMEQVFTNLIDNALRHTQSGGTVHIA-VQSVKDGLKIDVKDSGSGI 525 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L + F + ++ GTGLGL + K +V+A+ G + S KGT F Sbjct: 526 PEEDLPFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGT----TF 581 Query: 809 PLYDTSHPHDCI 820 Y + P D + Sbjct: 582 TFYIPTKPLDEV 593 >gi|268318211|ref|YP_003291930.1| histidine kinase [Rhodothermus marinus DSM 4252] gi|262335745|gb|ACY49542.1| histidine kinase [Rhodothermus marinus DSM 4252] Length = 352 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 67/249 (26%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 564 WKQEKNKLSHAKKIAE--KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 W+ + + K+I E + +++ +FL VSHE++TP+ +I GF+E + G Sbjct: 101 WQVYRTGRTLEKEIEELKRMENYRREFLGNVSHELKTPIFSIRGFTETLLEADPGDEATR 160 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 R + I R+ + + ++V DL +IS++E+G++ L P L V E + ++ A Sbjct: 161 R--AFLEKILRNADRLANLVRDLTEISRLETGELQLQPVPFELPALVREVLESMEPLAAT 218 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 +++ +R N+P +L D ++Q+ +N++ NAI + GG + + + V + V Sbjct: 219 RQVSLRCCVPENLPHVLGDRERLRQVLINLVDNAIKYNNPGGFVEVR-LQEQDGSVRVAV 277 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D G+G+ + + + F ++ S+ GTGLGL + K +++A+ + I STP KG Sbjct: 278 VDNGIGIAPQHIPRLTERFYRVDRSRSREQGGTGLGLAIVKHILNAHQTRLEIESTPGKG 337 Query: 802 TLIEIIFPL 810 + P+ Sbjct: 338 STFAFRLPV 346 >gi|170739808|ref|YP_001768463.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168194082|gb|ACA16029.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 975 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 128/251 (50%), Gaps = 7/251 (2%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + E K+ + L AK+ AE S KS FLA +SHE+RTPL AIIGF+ ++ + L Sbjct: 453 VIERKRAEESLRQAKEAAEDASRAKSSFLANMSHELRTPLNAIIGFTRLVMRRAKEALPT 512 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ-LYA 679 ++ E I S +L ++N +LD++K+E+G+M + +L+ + + V+ L Sbjct: 513 KQF-ENLEKILASSEHLLSLINSILDLAKVEAGRMEVKASEFALEPVLDLCLRTVEPLIK 571 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +E L+R + P +L D ++QI +N+LSNAI FT +G + ++ E V Sbjct: 572 SEGVRLVRD--VEDPPTMLRTDEEKLRQILINLLSNAIKFTEAGS--VTLRVRSAGEHVE 627 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG+G+ L F Q+ NS GTGLGL ++ + G + S Sbjct: 628 FAVTDTGIGIPQEALSAIFDEFHQVDNSATRSHSGTGLGLAISHRLARLLGGHIDVESRV 687 Query: 799 AKGTLIEIIFP 809 +G+ + P Sbjct: 688 GQGSTFTLSIP 698 >gi|153813569|ref|ZP_01966237.1| hypothetical protein RUMOBE_03991 [Ruminococcus obeum ATCC 29174] gi|149830369|gb|EDM85461.1| hypothetical protein RUMOBE_03991 [Ruminococcus obeum ATCC 29174] Length = 720 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 79/266 (29%), Positives = 128/266 (48%), Gaps = 26/266 (9%) Query: 568 KNKLSHAKKIAEKESSHKSD-----------------FLARVSHEIRTPLTAIIGFSEVI 610 K L+H K EK+ +K++ FL R+SH+IRTP+ I G +I Sbjct: 312 KTNLTHQKLEQEKDEKYKAELLIAAKKAEAANEAKTEFLQRMSHDIRTPINGICG---II 368 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + EY + + +L+L++VND+LD+SK+ESG++ L P +L + E Sbjct: 369 NMADHYADDMEKQTEYRTKVKEASHLLLELVNDVLDMSKLESGEIVLEETPFNLSKISKE 428 Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 + +++ A E+ I I I R ++ VK++ +NILSNA+ + + G I IS Sbjct: 429 VLIVIEQIAAEQNIQIEWEKKEIIHRNLIGSPGYVKRVMMNILSNAVKYNRANGHIYISC 488 Query: 730 THTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 +E+ + RDTG+GMT + +PF Q + + GTGLG+ +AK + Sbjct: 489 MEIPSEQPEMTTMEFVCRDTGIGMTEEFQKCVFEPFAQEHTGSRTKFAGTGLGMAIAKKL 548 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810 V+ G S GT + P Sbjct: 549 VEKMGGTITFESEEGIGTTFVLRVPF 574 >gi|189426007|ref|YP_001953184.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189422266|gb|ACD96664.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 810 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 128/249 (51%), Gaps = 8/249 (3%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q + L A++ AE + KS FLA +SHEIRTPL AIIG + ++ + L Sbjct: 418 RQNQQDLVQARQAAEGANEAKSLFLANMSHEIRTPLNAIIGINSLLVER----LDAGELK 473 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E A + N +LDI++D+LDISKIE+GK+ + P +++ + EK + Sbjct: 474 ELAKDSMAAANNLLDIISDVLDISKIEAGKLEIVTVPFDPRMLINQLERMFGAIVREKGL 533 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILR 740 S ++P +L+D ++QI +N+LSNA+ FT G ++ ST S ++ L Sbjct: 534 RFDVSLGASLPGLLLSDPARIQQIGVNLLSNALKFTEQGTIRLRLTGSTLDDSTVQLDLI 593 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D+G G+ +E+ PF Q S + GTGLGL +++ + + G + S + Sbjct: 594 VSDSGKGILAENIERVFSPFVQEDLSTTRKFGGTGLGLAISRHLAEMLGGSIKVESRIGE 653 Query: 801 GTLIEIIFP 809 G+ P Sbjct: 654 GSTFTCSIP 662 >gi|332527416|ref|ZP_08403471.1| PAS protein [Rubrivivax benzoatilyticus JA2] gi|332111826|gb|EGJ11804.1| PAS protein [Rubrivivax benzoatilyticus JA2] Length = 674 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE + KS FLA +SHEIRTPL AI G +++ + +P+ + I R+ + + Sbjct: 287 AEAANRAKSAFLANMSHEIRTPLNAITGMVHLLQRE-----ASPQQQRSLSVIARAVDHL 341 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L +VND+LD+SKIESGK+ L +LDE + A LV A EK + + R+ Sbjct: 342 LSLVNDVLDLSKIESGKLTLETVDFALDEVLERARGLVADLAAEKHLTLSVDNRAAGARL 401 Query: 698 LADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 D + Q+ LN+L NA+ FT G + + + ++L V DTG+G+ L Sbjct: 402 RGDPTRLAQLLLNLLGNAVKFTDRGEIRLTCAVDASEAAAPRLLLEVSDTGIGIEAARLA 461 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + PF Q +S R GTGLGL + + +V+ G+ + S P +G+ Sbjct: 462 QLFAPFQQADSSTTRRFGGTGLGLAICRHLVELMHGRIDVRSVPGQGS 509 >gi|312881159|ref|ZP_07740957.1| signal transduction histidine kinase [Vibrio caribbenthicus ATCC BAA-2122] gi|309371051|gb|EFP98505.1| signal transduction histidine kinase [Vibrio caribbenthicus ATCC BAA-2122] Length = 731 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 83/264 (31%), Positives = 130/264 (49%), Gaps = 18/264 (6%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I + Q+ L K A+ + KS FLA +SHEIRTP+ ++G +++++ Sbjct: 329 IDSFNQKTVFLEEEKVKAQASTKAKSAFLAVLSHEIRTPMNGVLGTAQILQKTEM----T 384 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 +Y + SG ++ ++N++LD SK+E G + L +P L+ + S+ Sbjct: 385 DEQRKYLKTLIDSGEHMMTLLNEILDFSKVEQGHLELEHKPFPLESVLGSINSVYNTLCC 444 Query: 681 EKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI- 738 EK + + I R D ++QI N+L+NA+ FT S G + +S T EE+I Sbjct: 445 EKGLQFKVYSDVPIERWYRFDKARLRQILFNLLNNAVKFT-SRGYVEVSFT----EEIID 499 Query: 739 ------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 LRVRDTG+G+ EK KPF Q +S R GTGLGL + + + GK Sbjct: 500 DQTYLRLRVRDTGIGIPKEAREKVFKPFEQAESSTTRRFGGTGLGLAIVNQLCELMGGKI 559 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHP 816 + S G+ EI F + + S P Sbjct: 560 QLTSEVGIGSCFEISFAV-EISEP 582 >gi|300897714|ref|ZP_07116111.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 198-1] gi|300358554|gb|EFJ74424.1| signal transduction histidine-protein kinase AtoS [Escherichia coli MS 198-1] Length = 593 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 92/398 (23%), Positives = 187/398 (46%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 214 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 273 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 274 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 326 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 327 RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATL-----GELMAGV 381 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q + + EY + + + + + ++ LL+ S+ Sbjct: 382 AHEVRNPLTAIRGYVQILRQQTSDLI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 437 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 438 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELNPINADRELLKQVLLNIL 493 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 494 INAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFF------TTKAS 547 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 548 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 585 >gi|294633343|ref|ZP_06711902.1| sensory box histidine kinase/response regulator [Streptomyces sp. e14] gi|292831124|gb|EFF89474.1| sensory box histidine kinase/response regulator [Streptomyces sp. e14] Length = 604 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 129/246 (52%), Gaps = 10/246 (4%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ ++KS F A VSHE+R+P+ ++I + ++ + PL + + + + + SG+ +L Sbjct: 181 ERADAYKSRFWANVSHELRSPVNSVIALARLLLDSAADPLTDEQRRQV-SLVQASGSTLL 239 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP--R 696 +V++LLDI+K ESG++ H V L + + ++Q A + ++IP Sbjct: 240 ALVDELLDIAKAESGRLEPHPAEVDLRSLLHQLRGMLQGTAQPG---VDLRIPDHIPLRP 296 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYEL 753 ++ D + +I N+LSNA+ FT GG++ + E+ + RV+DTGVG+ EL Sbjct: 297 LVTDEVMLTRILRNVLSNALKFT-VGGRVALEVAEEEREDGDRFVFRVQDTGVGIPAEEL 355 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 E+ + F Q+ Q GTGLGLP A+ + + G+ + S +GT + I P Sbjct: 356 ERVFEEFYQVRGPHQRGRAGTGLGLPYARRLTELLGGRLTLDSEVGRGTRVIIEIPARLG 415 Query: 814 SHPHDC 819 P D Sbjct: 416 RGPGDA 421 >gi|256828314|ref|YP_003157042.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577490|gb|ACU88626.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 955 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 129/243 (53%), Gaps = 13/243 (5%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 LS ++ AE + +S FLA +SHEIRTP+TA++GF + + R + +Y I Sbjct: 416 LSAQRQAAEAMAQTRSSFLASMSHEIRTPMTAVLGFLNLSLHLR----AQGQLRQYLLKI 471 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + + N ++ I+ND+LD++KIE+GK+ L +P ++ + + L+ A E + S Sbjct: 472 NAAANHLMGIINDILDLAKIEAGKVELEAKPFEVETLLQDTADLLVSGAFENGNELVVSV 531 Query: 691 ANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-----EEVILR--VR 742 +P R+ D +KQ+ LN+ SNA+ FT GG + ++ ++ + V LR V Sbjct: 532 QPGLPRRVTGDSLRLKQVLLNLSSNAVKFT-HGGTVRLAVHAAADATPVHDAVTLRFEVS 590 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ L + F Q + GTGLGL +++ +V G + S P +G+ Sbjct: 591 DTGIGIDPAVLPRLFTSFEQADAATARVYGGTGLGLSISRRLVQIMGGDITVRSRPGEGS 650 Query: 803 LIE 805 + E Sbjct: 651 IFE 653 >gi|171059271|ref|YP_001791620.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170776716|gb|ACB34855.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 1959 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 131/255 (51%), Gaps = 18/255 (7%) Query: 560 DISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 DI+ KQ + +L+ A+ AE + KS FLA +SHEIRTP+ AIIG + ++ Sbjct: 1199 DITGIKQAEQRLTQLNEELTFARDRAEAANRAKSVFLANMSHEIRTPMNAIIGLTHLLLR 1258 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + R + + + +LD++ND+LD+SKIESGK+ L +D +S A Sbjct: 1259 DSTDTVQQERL----GQVTGAAHHLLDVINDILDLSKIESGKLELEQTDFPVDTLLSRAC 1314 Query: 673 SLVQLYANEKRI-LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-IST 729 +LV A K + L+ S + +P L D + Q +N+LSNA+ FT G ++ Sbjct: 1315 ALVGERARAKGLELVLDS--HRLPTSLRGDPTRLSQALVNLLSNAVKFTEQGSVVVRAEI 1372 Query: 730 THTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 H + + +R V DTG+GM ++ + F Q +S R GTGLGL + + + + Sbjct: 1373 VHEDPDGLTVRFEVDDTGIGMAPEQIGRLFAAFEQADSSTTRRFGGTGLGLVITRHLAEL 1432 Query: 788 NMGKFYIFSTPAKGT 802 G+ + S P G+ Sbjct: 1433 MGGEVGVSSAPGVGS 1447 >gi|161521751|ref|YP_001585178.1| integral membrane sensor hybrid histidine kinase [Burkholderia multivorans ATCC 17616] gi|189352086|ref|YP_001947713.1| two-component system capsular synthesis sensor histidine kinase [Burkholderia multivorans ATCC 17616] gi|160345801|gb|ABX18886.1| integral membrane sensor hybrid histidine kinase [Burkholderia multivorans ATCC 17616] gi|189336108|dbj|BAG45177.1| two-component system capsular synthesis sensor histidine kinase [Burkholderia multivorans ATCC 17616] Length = 1001 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 127/260 (48%), Gaps = 12/260 (4%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T+ DI+ KQ + KL A+ AE + KS FLA +SHEIRTPL AI+G E++ Sbjct: 492 TLTDITARKQMEQKLHEARVAAESANKAKSTFLATMSHEIRTPLNAIVGNLELMARAPLA 551 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P R + I S + +L I++D+LD+SK ES +M + P + + + + + + Sbjct: 552 PTERRRL----DTIASSSDALLRIIDDVLDLSKAESNQMTIERIPFDVRDVLDDIAAFYR 607 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG-----GQIIISTT 730 A+ K + + A + + D ++QI N++ NAI FT G Q ++ Sbjct: 608 PLASAKGLELTCRVAPELADGYVGDPVRLRQIVSNLVDNAIKFTERGSVSIDAQRVVRGA 667 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + E+ RV DTG+G+ L + Q S R GTGLGLPL + + G Sbjct: 668 GGARVEI--RVADTGIGIPADSLPTLFDVYIQADASIYRRFGGTGLGLPLCRRIATLMHG 725 Query: 791 KFYIFSTPAKGTLIEIIFPL 810 + S +GT + + PL Sbjct: 726 DLLVDSREGEGTTMCVTLPL 745 >gi|37678828|ref|NP_933437.1| aerobic respiration control sensor protein ArcB [Vibrio vulnificus YJ016] gi|37197569|dbj|BAC93408.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] Length = 780 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 95/366 (25%), Positives = 178/366 (48%), Gaps = 31/366 (8%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHY 512 L S ++A+ D I N EG+ NRA+ +L G ++ P+ V+ ++ +++ Sbjct: 157 LRSFIDASPDLIYYRNAEGVFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEVAQQIVDTD 216 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM------HDISEWKQ 566 ++ + + T E+ + LR K+PF S + DI+E K+ Sbjct: 217 -QQVFANNRALTYEQWLEYPDGRKHYFELR----KVPFYSKDGRHLGLVGFGRDITERKR 271 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + L EK S K+ F++ +SHE+RTPL I+G S ++ + R +Y Sbjct: 272 HEESL-------EKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTRL----TDEQRKY 320 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I+ S + +I ND++D+ K + K+ L P++ ++ V+E S+ L A +K + Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 380 Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRV 741 + +P+ I D ++Q+ N++SNA+ FT GG ++ T + EE +I+ V Sbjct: 381 DLERLSELPKAIEVDATRLRQVIWNLISNAMKFTKEGG--VVMTVSSEVEEDFATIIIEV 438 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQ-IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 DTG+G+ EL+K + Q+ + + + GTG+GL +++ +++ G + S Sbjct: 439 EDTGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLINMMDGDITVSSEEGF 498 Query: 801 GTLIEI 806 G+ I Sbjct: 499 GSTFTI 504 >gi|330951694|gb|EGH51954.1| response regulator receiver:ATP-binding region [Pseudomonas syringae Cit 7] Length = 645 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 71/253 (28%), Positives = 127/253 (50%), Gaps = 9/253 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ +L ++ AE+ + KSDFLA +SHE+RTP+ ++G ++++ + Sbjct: 245 EQQRSVAQLIQTREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTQM----THE 300 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 EYA S +L ++ND+LD S+IE + + P +L E VS + A ++ Sbjct: 301 QSEYATLATESTEHLLRVINDILDFSRIERDALQMEGIPFNLAELVSASTHAFNHSAAQR 360 Query: 683 RILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-- 738 ++L+ + I + D ++QI +N++ NA+ FT G + + ++E + Sbjct: 361 KLLLELHIQPALEAINVIGDPTRIRQILVNLIGNALKFTEQGKVCVDARWAMLDDERLHF 420 Query: 739 -LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V+D+G+G+ LE F Q +S R GTGLGLP+A+ + + G + S Sbjct: 421 TCAVQDSGIGIDAERLESMFDAFKQADSSISRRYGGTGLGLPIARTLAERMGGTLHAESA 480 Query: 798 PAKGTLIEIIFPL 810 G+L + PL Sbjct: 481 EGSGSLFTLQIPL 493 >gi|125718371|ref|YP_001035504.1| histidine kinase [Streptococcus sanguinis SK36] gi|125498288|gb|ABN44954.1| Histidine kinase, putative [Streptococcus sanguinis SK36] gi|324993853|gb|EGC25772.1| sensor histidine kinase VicK [Streptococcus sanguinis SK405] gi|324994826|gb|EGC26739.1| sensor histidine kinase VicK [Streptococcus sanguinis SK678] gi|325687267|gb|EGD29289.1| sensor histidine kinase VicK [Streptococcus sanguinis SK72] gi|327463117|gb|EGF09438.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1] gi|327470648|gb|EGF16104.1| sensor histidine kinase VicK [Streptococcus sanguinis SK330] gi|327474728|gb|EGF20133.1| sensor histidine kinase VicK [Streptococcus sanguinis SK408] gi|327490285|gb|EGF22073.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1058] gi|328946752|gb|EGG40890.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1087] gi|332358682|gb|EGJ36505.1| sensor histidine kinase VicK [Streptococcus sanguinis SK355] gi|332358953|gb|EGJ36774.1| sensor histidine kinase VicK [Streptococcus sanguinis SK49] gi|332362448|gb|EGJ40248.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1056] gi|332367142|gb|EGJ44878.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1059] Length = 449 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 97/380 (25%), Positives = 175/380 (46%), Gaps = 41/380 (10%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R+ +E E +L SIL +DG+ NR G I++ N +K G +++ Sbjct: 83 RLTHENLEQETKRLSSILSYMTDGVLATNRRGQIITINDMATKQLGVKRDEVQNMSILDL 142 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLE---KITLGSTKEE-KLLSLRI----IIKKLPFSS 552 L S+ + Y DLR + ++T+ S E + LSLR+ + ++ F S Sbjct: 143 L-----SISDEY-------DLRDLITNVPELTIDSQDENGEYLSLRVRFALVRRESGFIS 190 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 +HD +E +KE + F++ VSHE+RTPLT++ + E + Sbjct: 191 GLVAVLHDTTE--------------QDKEERERRLFVSNVSHELRTPLTSVKSYLEALDE 236 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 G L P ++ N ++ +V DLL +S+I++ +L E + ++ + Sbjct: 237 ---GALSEPVAPDFVKVSLNETNRMMRMVTDLLSLSRIDNETSHLEVELTNFTAFITFIL 293 Query: 673 SLVQLYANE---KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 + N+ K+ I + + D + Q+ NI++NAI ++P GG I +S Sbjct: 294 NRFDKIKNQDETKKYEIIRDYPITPIWVEIDTDKLTQVIDNIMNNAIKYSPDGGTITVSI 353 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 T++E++IL + D G+G+ +L K F ++ ++ GTGLGL +AK ++ + Sbjct: 354 -KTTDEQLILSIADEGLGIPKQDLPKIFDRFYRVDKARSRAQGGTGLGLAIAKEIIKQHQ 412 Query: 790 GKFYIFSTPAKGTLIEIIFP 809 G + S G+ I+ P Sbjct: 413 GFIWAKSEYGVGSTFTIVLP 432 >gi|71064923|ref|YP_263650.1| putative signal transduction histidine kinase sensor [Psychrobacter arcticus 273-4] gi|71037908|gb|AAZ18216.1| putative signal transduction histidine kinase sensor [Psychrobacter arcticus 273-4] Length = 1135 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 80/261 (30%), Positives = 133/261 (50%), Gaps = 21/261 (8%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + + + +A+ A S KS FLA +SHE+RTPL +I GF ++ R G L NP Sbjct: 285 EMEMQNISIRNARDAAISTSQAKSAFLANISHELRTPLNSIDGFINLLA--RHGEL-NPE 341 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y I +S +L +VND+LD SKIE+GK+ L L + + + + ++ + EK Sbjct: 342 QDLYVQTIRKSSAHLLALVNDVLDFSKIEAGKLVLDRHEFDLYDTIYDVVDMLSPVSAEK 401 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR 740 + + F N++P R+ D +KQ+ NI+ NAI FT SG ++ +S + +++ Sbjct: 402 GLRMAVLFYNDVPMRVNGDALRLKQVLTNIVGNAIKFTDSGDVVVRVSLDDYQDNYLMIS 461 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD-------------- 786 V+D+G G++ + + + F Q S + GTGLGL ++K + Sbjct: 462 VQDSGKGISLSDQKMLFQSFSQGDPSITRQYGGTGLGLVISKQLTRLMGGDIGFYDNMQE 521 Query: 787 --ANMGKFYIFSTPAKGTLIE 805 +N G + F PA ++E Sbjct: 522 NISNQGATFWFRMPAHVDVLE 542 >gi|332711100|ref|ZP_08431034.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332350082|gb|EGJ29688.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 369 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 129/246 (52%), Gaps = 7/246 (2%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP-LGNPRYI 624 Q + K+ A I ++ KS F++ VSHE RTPL+ ++ +E++ +R+ L ++ Sbjct: 124 QAETKIRQALVIEQELREQKSSFVSIVSHECRTPLSKVLLATELL--ERYSKDLVKDKHR 181 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +Y I S + +++++L I K E K+N H P++L E S+ I +QL Sbjct: 182 KYFEQIKGSIQDMRQLLDEILFIEKAEGNKLNFHPTPINLVELCSDLIEQMQLATEGSHR 241 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 +I TS NIP D + ++ I N+LSN I ++P GG + T N I +++D+ Sbjct: 242 IILTS-QGNIPDAYMDTQLLRYIFNNLLSNGIKYSPEGGTVEFQLTVEGN-WAIFKIKDS 299 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ EL + +PF + N I GTGLGL + K V+ + G+ + S GT+ Sbjct: 300 GIGIPEQELSQLFEPFQRASNVGDI--PGTGLGLSIVKKSVEQHRGQILVDSQVGVGTVF 357 Query: 805 EIIFPL 810 + PL Sbjct: 358 TVRLPL 363 >gi|320157394|ref|YP_004189773.1| aerobic respiration control sensor protein arcB [Vibrio vulnificus MO6-24/O] gi|319932706|gb|ADV87570.1| aerobic respiration control sensor protein ArcB [Vibrio vulnificus MO6-24/O] Length = 780 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 95/366 (25%), Positives = 178/366 (48%), Gaps = 31/366 (8%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHY 512 L S ++A+ D I N EG+ NRA+ +L G ++ P+ V+ ++ +++ Sbjct: 157 LRSFIDASPDLIYYRNAEGVFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEVAQQIVDTD 216 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM------HDISEWKQ 566 ++ + + T E+ + LR K+PF S + DI+E K+ Sbjct: 217 -QQVFANNRALTYEQWLEYPDGRKHYFELR----KVPFYSKDGRHLGLVGFGRDITERKR 271 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + L EK S K+ F++ +SHE+RTPL I+G S ++ + R +Y Sbjct: 272 HEESL-------EKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTRL----TDEQRKY 320 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I+ S + +I ND++D+ K + K+ L P++ ++ V+E S+ L A +K + Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 380 Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRV 741 + +P+ I D ++Q+ N++SNA+ FT GG ++ T + EE +I+ V Sbjct: 381 DLERLSELPKAIEVDATRLRQVIWNLISNAMKFTKEGG--VVMTVSSEVEEDFATIIIEV 438 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQ-IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 DTG+G+ EL+K + Q+ + + + GTG+GL +++ +++ G + S Sbjct: 439 EDTGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLINMMDGDITVSSEEGF 498 Query: 801 GTLIEI 806 G+ I Sbjct: 499 GSTFTI 504 >gi|253682114|ref|ZP_04862911.1| sensory transduction histidine kinase [Clostridium botulinum D str. 1873] gi|253561826|gb|EES91278.1| sensory transduction histidine kinase [Clostridium botulinum D str. 1873] Length = 551 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 75/266 (28%), Positives = 141/266 (53%), Gaps = 15/266 (5%) Query: 557 TMHDISEWKQE---KNKLSHAKKIAEKESSH---KSDFLARVSHEIRTPLTAIIGFSEVI 610 D++E+ Q K K + KK+ +KE +++F A +SHE++TPL I+ +++ Sbjct: 252 VFRDVTEYLQIEKIKQKSNENKKLLDKEREFNKIRTEFFANLSHELKTPLNVILSSQQLL 311 Query: 611 ----KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 +N F + + ++ + ++ N +L ++++L+DI++I+SG +L+ E ++ Sbjct: 312 ALYLRNGEFAGIDYEKIEKHLKTLKQNSNRLLRLIDNLIDITRIDSGFFSLNLENHNIVT 371 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQ 724 + + V Y K I + F +I L D +++I LN+LSNA+ FTP GG+ Sbjct: 372 IIEDITLAVVEYIKNKDI--KLIFDTDIEEKLTLCDEDKIERIILNLLSNAVKFTPKGGK 429 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 I ++ H + + + VRD G+G+ ++ F Q+ S EG+G+GL L KA+ Sbjct: 430 IKVNI-HDDGDSLRITVRDNGIGIPKDKIHIIFDRFRQVDKSFTRISEGSGIGLSLVKAL 488 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810 ++ + G + S KG+ I FP+ Sbjct: 489 IEMHNGTISVESEYGKGSEFIIYFPI 514 >gi|229016645|ref|ZP_04173582.1| hypothetical protein bcere0030_12160 [Bacillus cereus AH1273] gi|229022860|ref|ZP_04179380.1| hypothetical protein bcere0029_12060 [Bacillus cereus AH1272] gi|228738395|gb|EEL88871.1| hypothetical protein bcere0029_12060 [Bacillus cereus AH1272] gi|228744635|gb|EEL94700.1| hypothetical protein bcere0030_12160 [Bacillus cereus AH1273] Length = 466 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 78/264 (29%), Positives = 140/264 (53%), Gaps = 9/264 (3%) Query: 550 FSSCYSLTMHD-ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 FS +++ D I + NK++++ E E + +FLA VSHE+RTPL+ I G+SE Sbjct: 206 FSERITISSEDEIGRLGKAFNKMANS---LETEDVKRKEFLANVSHELRTPLSYIKGYSE 262 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 I + G P+ + I + + + +V+DLLD++++E L +P+ + + Sbjct: 263 AILD---GVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEGEHFPLKKQPIVFSQLI 319 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 + + +L EK++ I T+ I ++ D R ++Q+ N+L NAI +T G III Sbjct: 320 EDVLDTYELQFIEKKLRISTNLNPEIIVMIDDDR-MQQVLHNVLDNAIRYTNQNGDIII- 377 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 T ++ L ++DTG+G+ LE + F ++ ++ + GTGLGL + + +V + Sbjct: 378 TLKQIDDYCELHIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGTGLGLAIVRQIVHIH 437 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYD 812 G++ I S KGT + I + D Sbjct: 438 DGEWRIESEKGKGTTVIIKLKVQD 461 >gi|220908496|ref|YP_002483807.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219865107|gb|ACL45446.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 469 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 72/255 (28%), Positives = 134/255 (52%), Gaps = 5/255 (1%) Query: 558 MHDISEWKQEKNKLSHAK--KIAEKESSH-KSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 M DI+ KQ ++ L + + ES+ K+ F+ +SHE+RTP+ AI+GFS+++ +R Sbjct: 185 MRDITARKQAESHLHQVQLQNLELIESNRLKNQFMGIISHELRTPMNAILGFSDLLL-RR 243 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 F P+ I + I + +L ++ ++L S++++ ++ L E L E Sbjct: 244 FHDRYEPQQIAFLERILNNAKHLLLMIEEILAYSRLKAHRLELQLEAFDLLELARITAEE 303 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 +Q A++K + + + + D V+QI +N+LSNAI FT +G ++ ++ Sbjct: 304 MQCMADQKALALELDLPPSPLVVCNDRTRVRQILVNLLSNAIKFTDTG-RVTLAIAPGKA 362 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E++++ V+DTG+G+ + + F Q+ SQ GTGLGL + ++V GK ++ Sbjct: 363 EKLLITVQDTGIGIDPAHQGRIFQEFWQVNQSQTRSQGGTGLGLSITSSLVTLMQGKIWV 422 Query: 795 FSTPAKGTLIEIIFP 809 S +G + I P Sbjct: 423 ESELGEGAVFRIELP 437 >gi|254445580|ref|ZP_05059056.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] gi|198259888|gb|EDY84196.1| Two component regulator three Y motif family [Verrucomicrobiae bacterium DG1235] Length = 1300 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 125/255 (49%), Gaps = 20/255 (7%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L +K+ AE+ KS FLA +SHEIRTP+ AI+G E++ + L YA Sbjct: 895 ELEVSKEKAERSDRLKSAFLANMSHEIRTPMNAIVGLLEIVHKE---DLPEDERETYAEV 951 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI----- 684 I +S ++ +++D+LD+S+IESG+ L +P +DE E SL + Y +K Sbjct: 952 IRQSSRTLMTLIDDILDLSRIESGEATLQLQPCRVDEVCEELYSLFR-YVTKKESDGDVV 1010 Query: 685 --LIRTSFANNIPR-------ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 L+R ++ + D +KQI N+LSNAI FT G + + Sbjct: 1011 LKLVRDGVEGSLLNEARDEFCLEFDPVRLKQILTNLLSNAIKFTEKGEILFGYDSENLGS 1070 Query: 736 EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 EV +R V D+GVG+ LEK F ++ + GTGLGL ++K + + G Sbjct: 1071 EVRIRFFVSDSGVGIPQDHLEKIFDRFHKVEDPDGRVHRGTGLGLTISKRLSEMMSGVIE 1130 Query: 794 IFSTPAKGTLIEIIF 808 + S KGT F Sbjct: 1131 VNSEVGKGTCFSATF 1145 >gi|257059969|ref|YP_003137857.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] gi|256590135|gb|ACV01022.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] Length = 576 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 79/254 (31%), Positives = 129/254 (50%), Gaps = 14/254 (5%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L A AE+ S KSDFLA +HE+RTPL IIGF ++ + + E+ Sbjct: 317 QELEQATLAAEEASRLKSDFLASTTHELRTPLNGIIGFLRLVLDGMAD--DSQEQQEFLE 374 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 +S +L+++ND+LDI+KIE+GKM+L V L E + A KR+ + Sbjct: 375 EAHKSALHLLNLINDILDIAKIEAGKMDLEVGSVELAELFEAIDNFTLPQAQRKRLNYSS 434 Query: 689 SFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHTSNEE----V 737 + + I+ + + + Q+ LN++SNAI FT GG +I+ + + E + Sbjct: 435 KYPPTLTPIVLYGNYQRLLQVMLNLVSNAIKFTHDGGIDITAEIVKKKLYWRDREFPGMI 494 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 +RV DTG+G+ + K + F Q+ S GTGLGL +++ +V+A G+ +S Sbjct: 495 KVRVSDTGIGVALEKQAKLFEKFVQVDGSHSKAYGGTGLGLAISQKLVEAMGGQVEFYSM 554 Query: 798 -PAKGTLIEIIFPL 810 G+ + PL Sbjct: 555 GEGLGSTVTFTVPL 568 >gi|150009899|ref|YP_001304642.1| two-component hybrid sensor kinase/response regulator [Parabacteroides distasonis ATCC 8503] gi|149938323|gb|ABR45020.1| two-component system sensor histidine kinase, with response regulator receiver domain [Parabacteroides distasonis ATCC 8503] Length = 1041 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 134/252 (53%), Gaps = 15/252 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 IS+ K+ + +L AK AE+ + KS FLA +SHEIRTPL AI+GFS ++ Sbjct: 657 ISDRKEVERELLEAKNKAEESNRLKSAFLANMSHEIRTPLNAIVGFSNILAETDVLEEKQ 716 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE-AISLVQLYA 679 EYA I+ + L+L ++ND+LD+SKIE+G + + V ++ +S+ S+ + Sbjct: 717 ----EYAEIIENNNALLLQLINDILDLSKIEAGTLEFVYSDVDVNTLLSDLERSMSKRVV 772 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 NE L+ + +A R + Q+ +N+L+NAI FT G IS ++ + +L Sbjct: 773 NENVRLVFERKEKDCYVSIAKNR-LMQVIINLLTNAIKFTDQGS---ISYGYSCLNKKML 828 Query: 740 R--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 R V DTG G++ + E F ++ + Q GTGLGL + + +VD G+ + S Sbjct: 829 RFYVSDTGRGISVEQQEAIFDRFVKLDSFAQ----GTGLGLSICRMIVDHLGGEMGVESE 884 Query: 798 PAKGTLIEIIFP 809 KG+ FP Sbjct: 885 IGKGSTFWFTFP 896 >gi|153824523|ref|ZP_01977190.1| sensor protein TorS [Vibrio cholerae MZO-2] gi|149742077|gb|EDM56106.1| sensor protein TorS [Vibrio cholerae MZO-2] Length = 984 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 79/255 (30%), Positives = 126/255 (49%), Gaps = 10/255 (3%) Query: 561 ISEWKQEKNK--LSHAK--KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 +SE + N+ L+HAK + AE+ S KS FLA +SHEIRTP+ ++G + ++++ Sbjct: 442 LSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLT 501 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 Y I+RSG +L I+ND+LD SKIE+G + +H L V E L+Q Sbjct: 502 STQQ----HYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQ 557 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A EK I + +++ + D + Q+ N++ N I FT G I + Sbjct: 558 SRAREKGITLTYHIDDDVTQYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLALDGQ 617 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V D+G+G+ E F Q ++ G GTGLGL +++ +V A G+ + Sbjct: 618 GIRFAVEDSGIGIAEEEQATLFDAFTQADAGRRKLG-GTGLGLAISRKLVQAMGGELQLA 676 Query: 796 STPAKGTLIEIIFPL 810 S +G+ PL Sbjct: 677 SQLGQGSCFWFTLPL 691 >gi|27364012|ref|NP_759540.1| aerobic respiration control sensor protein ArcB [Vibrio vulnificus CMCP6] gi|27360129|gb|AAO09067.1| Aerobic respiration control sensor protein arcB [Vibrio vulnificus CMCP6] Length = 780 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 95/366 (25%), Positives = 178/366 (48%), Gaps = 31/366 (8%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHY 512 L S ++A+ D I N EG+ NRA+ +L G ++ P+ V+ ++ +++ Sbjct: 157 LRSFIDASPDLIYYRNAEGVFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEVAQQIVDTD 216 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM------HDISEWKQ 566 ++ + + T E+ + LR K+PF S + DI+E K+ Sbjct: 217 -QQVFANNRALTYEQWLEYPDGRKHYFELR----KVPFYSKDGRHLGLVGFGRDITERKR 271 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + L EK S K+ F++ +SHE+RTPL I+G S ++ + R +Y Sbjct: 272 HEESL-------EKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTRL----TDEQRKY 320 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I+ S + +I ND++D+ K + K+ L P++ ++ V+E S+ L A +K + Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 380 Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRV 741 + +P+ I D ++Q+ N++SNA+ FT GG ++ T + EE +I+ V Sbjct: 381 DLERLSELPKAIEVDATRLRQVIWNLISNAMKFTKEGG--VVMTVSSEVEEDFATIIIEV 438 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQ-IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 DTG+G+ EL+K + Q+ + + + GTG+GL +++ +++ G + S Sbjct: 439 EDTGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLINMMDGDITVSSEEGF 498 Query: 801 GTLIEI 806 G+ I Sbjct: 499 GSTFTI 504 >gi|17232665|ref|NP_489213.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17134311|dbj|BAB76872.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 965 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 93/400 (23%), Positives = 193/400 (48%), Gaps = 47/400 (11%) Query: 440 TRINKRK-MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 T IN RK E E++ L LE+ +GI+ ++ +G + N A +K+ GY E+++ + Sbjct: 313 TDINDRKRAEEELLHLSQALESAVEGISQLDTQGHYIKVNPAYAKITGYKPEEMIGMEWA 372 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYS 555 + + + M ++L + + +E + GS ++++ ++ ++ Y Sbjct: 373 LTVHPDDKEKMMAAYHQMLK-NGKVEIEARAMRKDGSAFYKQVVMVKAYNQQQECIGHYC 431 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 M DIS+ ++E +L K +F++ VSHE+RTPLT+I G +++ + Sbjct: 432 F-MKDISD-RREVERL-------------KDEFVSVVSHELRTPLTSISGALDLLASGVV 476 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P G+ N + + ++ ++ND+LDI +IESGK+ + + + + +++++ ++ Sbjct: 477 -PAGSEDAQRMLNIAANNTDRLVRLINDILDIERIESGKIQIAPQACNAADLMTQSVEVM 535 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A + I + S + + AD + Q+ N++SNAI F+P+G + ++ Sbjct: 536 EELAEQAGI--QLSMSPLSAHLWADSDRIIQVFTNLISNAIKFSPTGATVWVTAKILEKG 593 Query: 736 E------------------------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 E ++ V+D G G+ +LE + FGQ+ S + Sbjct: 594 ELEKSQTPIPLYPQTPIPLYPHTPIILFAVKDQGRGIPADKLESIFERFGQVDASDSRKK 653 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 GTGLGL + ++++ + G+ + ST +G+ P++ Sbjct: 654 GGTGLGLAICRSILQHHGGQIWAESTSGEGSTFSFTLPIF 693 >gi|299146842|ref|ZP_07039910.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298517333|gb|EFI41214.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 660 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 82/256 (32%), Positives = 133/256 (51%), Gaps = 14/256 (5%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + D++E + +L A+ AE+ KS FLA +SHEIRTPL AI+GFS+++ Sbjct: 265 IRVDDVTERQHMIGELEKARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMVTE- 323 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE-AISL 674 E+ I+ + L+L ++ND+LD+SKIE+G + L +E L +E A S+ Sbjct: 324 ---DQEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVELKYEDFDLAVYFNELAASM 380 Query: 675 VQLYAN-EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + N + R++ + R+ D + QI N ++NAI +T G +I Sbjct: 381 HRRVVNPQVRLVPVNPYETCTVRL--DKNRLAQILTNFVTNAIKYTSKG--MIEMGYEKI 436 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + + L VRDTG+G+ + +K F ++ Q GTGLGL + KA+V+A G+ Sbjct: 437 DGNIRLYVRDTGIGIPEDKKDKVFHRFEKLDEFAQ----GTGLGLSICKAIVEACRGEIG 492 Query: 794 IFSTPAKGTLIEIIFP 809 S KG+L + P Sbjct: 493 FESEFDKGSLFWAVLP 508 >gi|237712910|ref|ZP_04543391.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262409649|ref|ZP_06086189.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|294647129|ref|ZP_06724733.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294807884|ref|ZP_06766665.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229447029|gb|EEO52820.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262352502|gb|EEZ01602.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|292637546|gb|EFF55960.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|294444882|gb|EFG13568.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 583 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 82/256 (32%), Positives = 133/256 (51%), Gaps = 14/256 (5%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + D++E + +L A+ AE+ KS FLA +SHEIRTPL AI+GFS+++ Sbjct: 188 IRVDDVTERQHMIGELEKARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMVTE- 246 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE-AISL 674 E+ I+ + L+L ++ND+LD+SKIE+G + L +E L +E A S+ Sbjct: 247 ---DQEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVELKYEDFDLAVYFNELAASM 303 Query: 675 VQLYAN-EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + N + R++ + R+ D + QI N ++NAI +T G I Sbjct: 304 HRRVVNPQVRLVPVNPYETCTVRL--DKNRLAQILTNFVTNAIKYTSKG--TIEMGYEKI 359 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + ++ L VRDTG+G+ + +K F ++ Q GTGLGL + KA+V+A G+ Sbjct: 360 DGDIRLYVRDTGIGIPEDKKDKVFHRFEKLDEFAQ----GTGLGLSICKAIVEACRGEIG 415 Query: 794 IFSTPAKGTLIEIIFP 809 S KG+L + P Sbjct: 416 FESEFDKGSLFWAVLP 431 >gi|150008173|ref|YP_001302916.1| putative two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] gi|149936597|gb|ABR43294.1| putative two-component system sensor histidine kinase [Parabacteroides distasonis ATCC 8503] Length = 522 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 77/258 (29%), Positives = 136/258 (52%), Gaps = 14/258 (5%) Query: 556 LTMHDISEW-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 + M D W ++E+ + + A++ + KS FLA +SHEIRTPL AI+GF+ ++ + Sbjct: 266 IAMQDKLRWVERERQRKEYELAKAKEANRLKSMFLANMSHEIRTPLNAIVGFANILAETK 325 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE--AI 672 + Y + ID++ L+L ++ D+LD SKIE+G ++ + E E A+ Sbjct: 326 EIEEEEREF--YVDIIDKNSELLLQLIEDILDFSKIEAGTFDITKKNFDFKEICEETYAV 383 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +++ N + + R S + +D + V Q+ N L+NAI FT S G+I ++ Sbjct: 384 HALKIPKNVRFVFDRGS---QPVTVFSDPKRVIQVISNFLTNAIKFT-SEGEIKLA-YKV 438 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 SN+E+ + V DTG+G+++ + F ++ +Q GTGLGL + K +++ G+ Sbjct: 439 SNDEIRVSVSDTGMGISDDDCRTIFDRFVKLNACKQ----GTGLGLAICKNIIEKLGGRI 494 Query: 793 YIFSTPAKGTLIEIIFPL 810 + ST G+ PL Sbjct: 495 GVESTLGVGSTFWFTLPL 512 >gi|332664632|ref|YP_004447420.1| PAS/PAC sensor signal transduction histidine kinase [Haliscomenobacter hydrossis DSM 1100] gi|332333446|gb|AEE50547.1| PAS/PAC sensor signal transduction histidine kinase [Haliscomenobacter hydrossis DSM 1100] Length = 425 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 97/416 (23%), Positives = 192/416 (46%), Gaps = 62/416 (14%) Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 ++L +I++ +DGI II+ G + N A + LFGY E++L K + + + Sbjct: 12 LRLKAIIKTATDGIIIIDDRGSMELVNEAAANLFGYEEEELLGKNIRMLMPNPHHDAHDT 71 Query: 512 YLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDIS----- 562 Y+ + +R+ + + +G K+++ LR+ I +LP ++ +HD++ Sbjct: 72 YIQNYIQTGVRKIIGIGREVMGLRKDQRTFPLRLSISEVQLPERVVFTGILHDLTAQKAA 131 Query: 563 ------------------------------------EWKQEKNKLSHA---------KKI 577 E++ ++ K++ A +K Sbjct: 132 EAKIVELNQHLEEEVYRRTEELAATVNQLLNTNHKLEFEIQERKVAEATLRKNEKELRKA 191 Query: 578 AEKE---SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 EKE ++ KS F++ SHE RTPL+ I+ +++++ + R +++ I + Sbjct: 192 FEKERELNTLKSRFVSMASHEFRTPLSTILSSADLLEMYTAEEQQDKR-LKHTTRIKSAV 250 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 N ++ ++ND L +S++E GK+NL +L+E E + VQ ++L ++ Sbjct: 251 NNLISVLNDFLSLSRLEEGKINLTPVEFNLEEFCDEVLDDVQALLKPGQVLQHHGLLSD- 309 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 + D + +K + +N+ SNAI ++ G++I E+ R++D G+G+ E + Sbjct: 310 TMVFLDKKMLKNVFINLFSNAIKYSEP-GKMIDCYVEIMENELCFRIQDYGIGIPEEEQQ 368 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F + N++ I GTGLGL + K V+ G+ + ST +GT+ + PL Sbjct: 369 HLFTRFFRAHNAENI--PGTGLGLNIVKRYVELMNGRIHFESTLGEGTVFHVHIPL 422 >gi|302337894|ref|YP_003803100.1| histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301635079|gb|ADK80506.1| histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 727 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 82/265 (30%), Positives = 136/265 (51%), Gaps = 18/265 (6%) Query: 549 PFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 P S Y+ + HD+ + E+N+ A + E+ + KSDFLA VSHEIRTPL IIG Sbjct: 198 PLSELYNALDVMRHDLQQL-DEQNR--DAMQRLEEANRAKSDFLANVSHEIRTPLGGIIG 254 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 +E+++N N + + S ++ VND+LD+SK+E G M + P +L Sbjct: 255 AAELLQNTAL----NDEQQHFLQILQGSSEALMSGVNDVLDLSKLEQGAMAIVPRPTNLS 310 Query: 666 EAVSEAISLVQLYANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 ++ ++ + +K + L T A+ L D ++QI +N+L NA+ FTP+G Sbjct: 311 ALLNGIATIFRPRCRKKGLELFLTCEADEKQEYLVDPIRLRQILMNLLHNALKFTPTGSI 370 Query: 725 IIISTT---HTSNEEVILR----VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 + + + E++ R V+DTG+G+ ++E + F QI N++ G+GLG Sbjct: 371 RLDCRSKGIQKEDGELMYRHDFSVQDTGIGIPQEKIETIFEKFTQIHNTEVQNFGGSGLG 430 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGT 802 L +A +V G + S KG+ Sbjct: 431 LHIAAVLVAKLGGTLEVVSEAGKGS 455 >gi|294637120|ref|ZP_06715431.1| sensor kinase protein RcsC [Edwardsiella tarda ATCC 23685] gi|291089691|gb|EFE22252.1| sensor kinase protein RcsC [Edwardsiella tarda ATCC 23685] Length = 999 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 80/259 (30%), Positives = 128/259 (49%), Gaps = 9/259 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 M D+S + + L AE+ S KS FLA VSHE+RTPL IIG ++++ + Sbjct: 484 AMVDVSTRVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLRTKTL- 542 Query: 617 PLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P ++ + S L+L I+ND+LD SKIES ++ + E + I Sbjct: 543 ----PEEVQRLLGAMSNSSGLLLKIINDILDFSKIESEQLKIEPGRFVAREVIPHIIGNY 598 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 KR+ + ++P I D+ ++Q+ N+LSNAI FT +G II ++ Sbjct: 599 LPLVVRKRLTLYCFIEPDVPAEISGDIMRIQQVLSNLLSNAIKFTDTG--CIILQARVND 656 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + R+RDTG+G+ ++ + PF Q+ + Q GTGLGL + + +V G + Sbjct: 657 FYLEFRIRDTGMGIPARDVLRLFDPFFQVGSGVQRHFHGTGLGLAICEKLVSLMDGDIAV 716 Query: 795 FSTPAKGTLIEIIFPLYDT 813 S P G++ I P+Y Sbjct: 717 ESEPGLGSIFTIRLPMYQA 735 >gi|253568518|ref|ZP_04845929.1| two-component sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251842591|gb|EES70671.1| two-component sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 660 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 119/226 (52%), Gaps = 11/226 (4%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L HAK+ AE+ + KS F++ +SHEIRTPL AI+GFS ++ + EYA+ I Sbjct: 420 LRHAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLLIDT---VEATDEQKEYADII 476 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR-ILIRTS 689 + L+L +++D+LD+S++ESGK+ +E L I+L + N R I +R Sbjct: 477 QTNSELLLQLISDVLDVSRLESGKLLFKYEWCELVNHCQNMITLTR--KNRTRDIDVRLQ 534 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL-RVRDTGVGM 748 + D ++Q+ +N+L+NA+ FTP GG I + ++ +L V DTG G+ Sbjct: 535 MPKEPYMLYTDPLRLQQVIINLLNNALKFTPDGGSITLDYEIDEEDQCMLFSVTDTGSGI 594 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + E + F ++ Q GTGLGL + K + G +I Sbjct: 595 PEDKQELVFQRFEKLNEFVQ----GTGLGLAICKLTIQRMGGDIWI 636 >gi|167916549|ref|ZP_02503640.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 112] Length = 771 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 100/380 (26%), Positives = 172/380 (45%), Gaps = 23/380 (6%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +R+ L ++EA+ D I + I S N A ++FGY ++ + V + Sbjct: 245 ERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGY--DEHAARGCDVAMLI 302 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSC--YSLT 557 + NH L E + D+R+ +E + + +++ +R + P +C SLT Sbjct: 303 APRWLRNHPLPESVP-DMREPIENVDVLCVRQDGG-RMRATMSASPVFDERDACIALSLT 360 Query: 558 MHDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + D E ++ + A++ A+ + K + LA VSHE+RTPL I G+ EV+ Sbjct: 361 LRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVL 420 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +N P+ + + IDRS + +V D+LD S + +GK+ L PV L V++ Sbjct: 421 RN----PVDGALQQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVND 476 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + A I + A + D ++Q+ N+LSNA FTP GG++ +S Sbjct: 477 VTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLE 536 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + L V DTG G++ L + F + + G GLGL + + + + + G Sbjct: 537 R-HDAQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGG 595 Query: 791 KFYIFSTPA-KGTLIEIIFP 809 K S +GT I P Sbjct: 596 KVEAASAGKNRGTTFAITLP 615 >gi|116622396|ref|YP_824552.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116225558|gb|ABJ84267.1| integral membrane sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 610 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 81/258 (31%), Positives = 130/258 (50%), Gaps = 14/258 (5%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H S Q ++ A+ AE + KS FLA +SHE+RTPL+ I+ S+++ P Sbjct: 193 HLASLVDQRTQQVVEARDQAESANRAKSAFLANMSHELRTPLSVILASSDLLNES--DP- 249 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P E I SG +L +++D+LD++KIE+GK +L L V + ++++ Sbjct: 250 -TPDQREDIARISHSGKHLLGLIDDVLDVAKIEAGKEDLAIAASDLISTVRTVVEMMRVR 308 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A EK + + A ++PR + D ++QI +N+L NAI FT G + + T E Sbjct: 309 AEEKCLSLVYYQAPDVPRYVRVDAPKLRQILINLLGNAIKFTRKGTVKLQLSAKTGAEPG 368 Query: 738 ILR----VRDTGVGMTNYELEKAMKPFG-QIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + R + D+GVGM + L + +PF P Q GTGLGL + + V+ G Sbjct: 369 LARFSFDIEDSGVGMPQHHLGRIFEPFEVSNPGPQT----GTGLGLTITQRFVELMGGTL 424 Query: 793 YIFSTPAKGTLIEIIFPL 810 + S +G+ E+ PL Sbjct: 425 VVKSDVGRGSRFEVELPL 442 >gi|94263712|ref|ZP_01287520.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455911|gb|EAT06070.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 399 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 125/242 (51%), Gaps = 16/242 (6%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A+ + KS+FLA +SHEIRTP+ +IG + ++ + + YA I SG + Sbjct: 159 AQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLAEDL----SDEQRSYAQIIISSGQAL 214 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L+++N +LD SKIE+G++ L P S E + E L+Q A + I + + + +P + Sbjct: 215 LELINQILDFSKIEAGRLELDCRPFSPRELIQEVAVLLQPQAAAQNITLTSEVSPGVPAV 274 Query: 698 L-ADLRSVKQIALNILSNAIHFTPSGGQII--------ISTTHTSNEEVILRVRDTGVGM 748 + D ++Q+ LN++ NAI FT GG + + H S + V+D+G+G+ Sbjct: 275 VEGDPVRLRQVLLNLVGNAIKFTEVGGVAMELSPAPADPAAPHCS---LHFAVKDSGIGI 331 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L+ + F Q+ S + GTGLGL + + +++ G+ + S KG+ Sbjct: 332 PVEKLDLLFQRFQQVDGSTCRKYGGTGLGLAICRRLMELMGGEIGVKSEEGKGSTFWFTV 391 Query: 809 PL 810 PL Sbjct: 392 PL 393 >gi|262381248|ref|ZP_06074386.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262296425|gb|EEY84355.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 524 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 77/258 (29%), Positives = 135/258 (52%), Gaps = 14/258 (5%) Query: 556 LTMHDISEW-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 + M D W ++E+ + + A++ + KS FLA +SHEIRTPL AI+GF+ ++ + Sbjct: 268 IAMQDKLRWVERERQRKEYELAKAKEANRLKSMFLANMSHEIRTPLNAIVGFANILAETK 327 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE--AI 672 + Y + ID++ L+L ++ D+LD SKIE+G ++ E E A+ Sbjct: 328 EIEEEEREF--YVDIIDKNSELLLQLIEDILDFSKIEAGTFDITKRNFDFKEICEETYAV 385 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +++ N + + R S + +D + V Q+ N L+NAI FT S G+I ++ Sbjct: 386 HALKIPKNVRFVFDRGS---QPVTVFSDPKRVVQVISNFLTNAIKFT-SEGEIKLA-YKV 440 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 SN+E+ + V DTG+G+++ + F ++ +Q GTGLGL + K +++ G+ Sbjct: 441 SNDEIRVSVSDTGMGISDDDCRTIFDRFVKLNACKQ----GTGLGLAICKNIIEKLGGRI 496 Query: 793 YIFSTPAKGTLIEIIFPL 810 + ST G+ PL Sbjct: 497 GVESTLGVGSTFWFTLPL 514 >gi|158340469|ref|YP_001521463.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158310710|gb|ABW32324.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] Length = 677 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 108/410 (26%), Positives = 185/410 (45%), Gaps = 57/410 (13%) Query: 446 KMEIEVMQLCSILEAT----SDGIAI-INREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 K E + +QL + T +D I I + G++ + N K FGY E+I+ + + Sbjct: 4 KFEADSLQLLQTWQQTILDSADFIVISTDINGVVQTLNAGALKQFGYSSEEIIGRVTPII 63 Query: 501 LEQNT-----PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR---------IIIK 546 + V++ L ++ D+ + K +G E +R + +K Sbjct: 64 FHDSAEIVLRAQVLSKELGRVIEADVETLIVKARMGMADENIWTLIRKDHSQFMVCLSVK 123 Query: 547 KLPFSS------------------------CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 L +S C + + + E + ++L+ A + AE + Sbjct: 124 ALRDASGQLKGFLGIGKDVTAQQETEAALRCLNANLEQLVE--ERTSQLNTAIETAEIAN 181 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSE-VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 KS F+A +SHE RTPL AI+GFS+ +++++R P R + I RSG +L +V Sbjct: 182 QAKSKFIANMSHEFRTPLNAIMGFSQLLLRDRRITPDQQSRL----DVIYRSGEHLLSLV 237 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700 N+++ +SKIE G + + V+L L L A+ K I ++ A ++PR I D Sbjct: 238 NEVITLSKIEDGVLTYEPKDVNLYHLCEGVKELFSLQASSKDIQLQLRIAPDVPRFIRTD 297 Query: 701 LRSVKQIALNILSNAIHFTPSGG-----QIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 + ++QI +N+L NA+ +T G Q T T + ++DTG G+ + L K Sbjct: 298 AQKLRQILINLLGNALKYTKRGSVECRVQWRPPRTETLPHHIEFSIQDTGPGIPQHLLPK 357 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 + F Q P ++ G G GLGL + + V G I ST GT+++ Sbjct: 358 LFEHFVQDPLTRDKFG-GIGLGLCICQRFVHLMGGDISIESTEDHGTIVD 406 >gi|33323031|gb|AAQ07255.1| putative sensor kinase PK4 [Oryza sativa Japonica Group] Length = 653 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 78/239 (32%), Positives = 125/239 (52%), Gaps = 11/239 (4%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 N+L KKIAE K FLA +SHEIRTPL AIIGF+E++ PL + + + Sbjct: 161 NELLRQKKIAESAVLAKESFLANMSHEIRTPLNAIIGFTELLSGT---PL-DKQQQAFIQ 216 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + +G +L IVND+LD+SKIESG ++L +P +L +++ L+++ + + Sbjct: 217 DVQTAGENLLLIVNDILDLSKIESGGLSLEKQPFNLKKSLRHVYDLLKVKTADG-VEFNL 275 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRD 743 +P ++ D + QI +N+ NA+ FT + G++ IS + E + V+D Sbjct: 276 YLDAELPDVITGDQGRLNQIMVNLAGNALKFT-NEGEVTISVKNKGETEDSYTIRFSVKD 334 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TG+G+ LE + F Q + GTGLGL + K +V + K + S G+ Sbjct: 335 TGIGIPKEHLESIFERFTQGQEDTTRKFGGTGLGLSIVKELVKLHDSKIQVKSREGAGS 393 >gi|84516567|ref|ZP_01003926.1| hypothetical protein SKA53_08146 [Loktanella vestfoldensis SKA53] gi|84509603|gb|EAQ06061.1| hypothetical protein SKA53_08146 [Loktanella vestfoldensis SKA53] Length = 720 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 125/225 (55%), Gaps = 11/225 (4%) Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHEIRTPL IIG +++++ + P + R + I RSG+++LDI+ND+LD Sbjct: 226 FLATMSHEIRTPLNGIIGAADLLRTEDLDPAQSRRVL----TIWRSGHVLLDIINDILDY 281 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--ILADLRSVK 705 S +++ + + PVSL + + Q + + SF ++P I+ D ++ Sbjct: 282 SNLDANGVTFNNAPVSLPDVAGLVHDVFQARIADAGL----SFDIDLPAITIMTDEIRLR 337 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 QI LN++SNAI FTP+ G + + + + + + V+D+G+G+ + + K + F QI Sbjct: 338 QILLNLVSNAIKFTPA-GSVSVRGMLLAQDGLRIEVQDSGIGIASEDHSKLFRDFSQIEG 396 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 S+ GTGLGL + + +V G+ + S +G++ + P+ Sbjct: 397 SESRPFGGTGLGLAICRRVVTGMGGRIGVESAIGRGSVFWVELPV 441 >gi|254440930|ref|ZP_05054423.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Octadecabacter antarcticus 307] gi|198251008|gb|EDY75323.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Octadecabacter antarcticus 307] Length = 817 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 93/382 (24%), Positives = 179/382 (46%), Gaps = 31/382 (8%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM--N 510 ++ S++ + DG+ + + +G IL + A +FG+ +L + N SV+ + Sbjct: 200 RMQSVMGTSLDGVVVCDADGKILEFSPAAEGIFGHSKAAVL--------DLNIASVIVPD 251 Query: 511 HYL----TEILSLDLRQTLEKITLGSTKEEKL--------LSLRIIIKKLPFSSCYSLTM 558 H L + + + + I G + E + L I K + + + Sbjct: 252 HLLHANEAGMERMRIGGDMRVIGKGRVRLEAKHKDGHIFPVELAIQNAKTDEGTIFISFL 311 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DIS + +L A+ A K++FL+ +SHEIRTPL ++G ++++ Sbjct: 312 RDISHEVMAEAELVTARDKALASEKMKTEFLSTMSHEIRTPLNGLLGNMNLLRDTEL--- 368 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI--SLVQ 676 N Y Y++ SG L+L V+D+LDI++ ++GK+N EPV++ E + + + Sbjct: 369 -NENQDRYVGYMETSGRLLLSHVSDVLDITRYDAGKLNTRIEPVNISELLQDIVDNQAST 427 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG--GQIIISTTHTSN 734 + NE L+ + +L+DL ++ + +N++ NA+ FT G I + Sbjct: 428 AFQNETS-LVWGWCGVKMDWVLSDLDRLQHVMMNLIGNAVKFTRRGKVSVTIENVGEGDA 486 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E+++++ DTG GM+ +++ F + GTGLGL +AK V+A G+ + Sbjct: 487 AELLVKIIDTGQGMSEDLIKRVFDDFVTGNTAYDRDVGGTGLGLSIAKRFVNALGGEIGV 546 Query: 795 FSTPAKGTLIEIIFPLYDTSHP 816 S +G+ + P+++ P Sbjct: 547 ESIVGEGSTFWVRLPVHEAEAP 568 >gi|220911015|ref|YP_002486324.1| multi-sensor signal transduction histidine kinase [Arthrobacter chlorophenolicus A6] gi|219857893|gb|ACL38235.1| multi-sensor signal transduction histidine kinase [Arthrobacter chlorophenolicus A6] Length = 563 Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 123/230 (53%), Gaps = 5/230 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K+DFLA V+HE+RTPLT+I+ + ++I+ P G+ + + + R+ + ++ D+ Sbjct: 327 KTDFLATVNHELRTPLTSIMAYLDMIQESTEQP-GSAEIHQMLDIVVRNTERLRTLIEDM 385 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 L +S+ +H PV L + S ++ A + + I + P ILAD + Sbjct: 386 LSVSRNGLDDTLMHLTPVRLGHTLDLVASALRPLAKLQNVTIALDPVPDDPEILADEIQL 445 Query: 705 KQIALNILSNAIHFTPSGGQI-IISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPF 760 +Q+ N++SNAI FTPSGG+I + S +H + + +RV D G+G+++ E++ F Sbjct: 446 QQVFTNLVSNAIKFTPSGGRIEVGSESHAAADGSRWATVRVADNGIGISSDEIDHVFTRF 505 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + N+ GTGLGL + K +V + G + ST GT + + PL Sbjct: 506 YRASNAMSGAIPGTGLGLAITKDIVARHGGTIDVASTLGAGTTVTVSLPL 555 >gi|330973454|gb|EGH73520.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. aceris str. M302273PT] Length = 645 Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 71/253 (28%), Positives = 125/253 (49%), Gaps = 9/253 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ +L ++ AE+ + KSDFLA +SHE+RTP+ ++G ++++ Sbjct: 245 EQQRSVAQLIQTREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTHM----THE 300 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 EYA S +L ++ND+LD S+IE + + P +L E VS + A ++ Sbjct: 301 QSEYATLATESTEHLLRVINDILDFSRIERDALQMEGIPFNLAELVSASTHAFNHSAAQR 360 Query: 683 RILIRTSFANNIP--RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-- 738 +L+ + ++ D ++QI +N++ NA+ FT G + + ++E + Sbjct: 361 NLLLELHIQPGLETMNVIGDPTRIRQILVNLIGNALKFTEQGKVCVDARWAMLDDERLHF 420 Query: 739 -LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V+D+G+G+ LE F Q +S R GTGLGLP+A+ + + G Y S Sbjct: 421 TCAVQDSGIGIDAERLESMFDAFKQADSSISRRYGGTGLGLPIARTLAERMGGTLYAESK 480 Query: 798 PAKGTLIEIIFPL 810 G+L + PL Sbjct: 481 EGSGSLFTLQIPL 493 >gi|324991493|gb|EGC23426.1| sensor histidine kinase VicK [Streptococcus sanguinis SK353] Length = 449 Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 97/380 (25%), Positives = 174/380 (45%), Gaps = 41/380 (10%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R+ +E E +L SIL +DG+ NR G I++ N +K G +++ Sbjct: 83 RLTHENLEQETKRLSSILSYMTDGVLATNRRGQIITINDMATKQLGVKRDEVQNMSILDL 142 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKI---TLGSTKEE-KLLSLRI----IIKKLPFSS 552 L S+ + Y DLR + + T+ S E + LSLR+ + ++ F S Sbjct: 143 L-----SISDEY-------DLRDLITNVPELTIDSQDENGEYLSLRVRFALVRRESGFIS 190 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 +HD +E +KE + F++ VSHE+RTPLT++ + E + Sbjct: 191 GLVAVLHDTTEQ--------------DKEERERRLFVSNVSHELRTPLTSVKSYLEALDE 236 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 G L P ++ N ++ +V DLL +S+I++ +L E + ++ + Sbjct: 237 ---GALSEPVAPDFVKVSLNETNRMMRMVTDLLSLSRIDNETSHLEVELTNFTAFITFIL 293 Query: 673 SLVQLYANE---KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 + N+ K+ I + + D + Q+ NI++NAI ++P GG I +S Sbjct: 294 NRFDKIKNQDETKKYEIIRDYPITPILVEIDTNKLTQVIDNIMNNAIKYSPDGGTITVSI 353 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 T++E++IL + D G+G+ +L K F ++ ++ GTGLGL +AK ++ + Sbjct: 354 -KTTDEQLILSIADEGLGIPKQDLPKIFDRFYRVDKARSRAQGGTGLGLAIAKEIIKQHQ 412 Query: 790 GKFYIFSTPAKGTLIEIIFP 809 G + S G+ I+ P Sbjct: 413 GFIWAKSEYGVGSTFTIVLP 432 >gi|319946569|ref|ZP_08020803.1| sensor histidine kinase VicK [Streptococcus australis ATCC 700641] gi|319746617|gb|EFV98876.1| sensor histidine kinase VicK [Streptococcus australis ATCC 700641] Length = 448 Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 99/387 (25%), Positives = 180/387 (46%), Gaps = 50/387 (12%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R+ +E E +L SIL +DG+ NR G I+ N +K VE+ Sbjct: 83 RLTHENLEQETKRLTSILSYMTDGVLATNRRGQIILVNEMAAKQLNVVVEE--------- 133 Query: 501 LEQNTPSVMNHYLTEILSL-------DLRQTLEKITLGSTKEE-KLLSLRI----IIKKL 548 VMN + ++L + DL + ++T+ S E + +SLR+ I ++ Sbjct: 134 -------VMNISILDLLGISEEYELRDLITNVPELTIDSQDENGEYISLRVRFALIRRES 186 Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 F S +HD +E +KE + F++ VSHE+RTPLT++ + E Sbjct: 187 GFISGLVAVLHDTTE--------------QDKEERERRLFVSNVSHELRTPLTSVKSYLE 232 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 + + G + P E+ N ++ +V DLL +S+I++ L E + + Sbjct: 233 ALDD---GAISEPVAPEFVKVSLTETNRMMRMVTDLLSLSRIDNETSQLDVELTNFTAFI 289 Query: 669 SEAISL---VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + ++ ++ A EK+ I + + + D + Q+ NIL+NAI ++P GG+I Sbjct: 290 TFILNRFDKMKSQAGEKKYDIVRDYPISPVWVEIDTDKMTQVLDNILNNAIKYSPDGGEI 349 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + T++ ++I+ + D G+G+ +L + F ++ ++ GTGLGL +AK ++ Sbjct: 350 RVGM-KTTDAQLIISISDEGLGIPKKDLPRIFDRFYRVDKARSRAQGGTGLGLAIAKEII 408 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYD 812 + G + S KG+ I+ P YD Sbjct: 409 KQHKGFIWAKSEYGKGSTFTIVLP-YD 434 >gi|255012859|ref|ZP_05284985.1| two-component hybrid sensor kinase/response regulator [Bacteroides sp. 2_1_7] Length = 1041 Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 134/252 (53%), Gaps = 15/252 (5%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 IS+ K+ + +L AK AE+ + KS FLA +SHEIRTPL AI+GFS ++ Sbjct: 657 ISDRKEVERELLEAKNKAEESNRLKSAFLANMSHEIRTPLNAIVGFSNILAETDVLEEKQ 716 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE-AISLVQLYA 679 EYA I+ + L+L ++ND+LD+SKIE+G + + V ++ +S+ S+ + Sbjct: 717 ----EYAEIIENNNALLLQLINDILDLSKIEAGTLEFVYSDVDVNTLLSDLERSMSKRVV 772 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 NE L+ + +A R + Q+ +N+L+NAI FT G IS ++ + +L Sbjct: 773 NENVRLVFERKEKDCYVSIAKNR-LMQVIINLLTNAIKFTDQGS---ISYGYSCLNKKML 828 Query: 740 R--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 R V DTG G++ + E F ++ + Q GTGLGL + + +VD G+ + S Sbjct: 829 RFYVSDTGRGISVEQQEAIFDRFVKLDSFAQ----GTGLGLSICRMIVDHLGGEMGVESE 884 Query: 798 PAKGTLIEIIFP 809 KG+ FP Sbjct: 885 IGKGSTFWFTFP 896 >gi|282600301|ref|ZP_05973770.2| sensor kinase protein RcsC [Providencia rustigianii DSM 4541] gi|282565779|gb|EFB71314.1| sensor kinase protein RcsC [Providencia rustigianii DSM 4541] Length = 927 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 81/262 (30%), Positives = 141/262 (53%), Gaps = 8/262 (3%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS Q + L AE+ + KS FLA VSHE+RTPL IIG E++ QR+ Sbjct: 428 DISIRVQMEKSLQDVADAAEQANQAKSMFLATVSHELRTPLYGIIGNIELL--QRYDL-- 483 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + + + +D S +L+L I++D+LD SKIES ++ + + + + + ++ A Sbjct: 484 SDKAVRLVSTMDNSSSLLLQIISDILDFSKIESEQLKIENKSFNCRDVFAFVLANYVPLA 543 Query: 680 NEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 ++K I + + NIP + L+D ++Q+ NI++N+I FT SG +++ SN + Sbjct: 544 SKKHISLYSYVEPNIPDLMLSDAVRLQQVISNIVNNSIKFTDSGF-VMLHVWKDSN-YLK 601 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + ++D+G+GMT + + PF Q+ + Q +GTGLGL + + +++ G + S Sbjct: 602 IEIKDSGIGMTPAVVMQLFDPFFQVYD-QNNGHKGTGLGLAICEKLINLMDGDIAVNSQA 660 Query: 799 AKGTLIEIIFPLYDTSHPHDCI 820 G+ I PLY + I Sbjct: 661 GLGSTFTIRIPLYGQKYLEQVI 682 >gi|209965866|ref|YP_002298781.1| sensory box histidine kinase [Rhodospirillum centenum SW] gi|209959332|gb|ACI99968.1| sensory box histidine kinase [Rhodospirillum centenum SW] Length = 1057 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 128/249 (51%), Gaps = 25/249 (10%) Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF------SEVIKNQRFGPLGNPRY 623 +L A+ AE S KS FLA +SHE+RTP+T +IG + V +QR RY Sbjct: 666 ELQTARDAAEAASRAKSRFLAVMSHELRTPMTGVIGMIDLLLGTTVTSDQR-------RY 718 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 +E + S + +L ++ND+LD SKIE+G++ + PV L + + I L A++K Sbjct: 719 LE---TLHSSADALLVVLNDILDFSKIEAGQLVIEAIPVRLQALLDDVIDLFAPAASQKG 775 Query: 684 ILIRTSFA-----NNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE 736 + +R N +P+ L D ++Q+ +N++ NA+ FTP+G ++ Sbjct: 776 VELRVRQPERRQKNRLPKELTGDPTRLRQVLMNLVGNAVKFTPAGSIELRAEAQREDGGT 835 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +LR V DTG+G+ + + F Q S R GTGLGL + K +V G+ + Sbjct: 836 WLLRFEVEDTGIGIPPDVVPMLFESFTQADASTTRRFGGTGLGLAICKRLVTMMGGEIGV 895 Query: 795 FSTPAKGTL 803 S P +G++ Sbjct: 896 RSEPRRGSV 904 >gi|209524733|ref|ZP_03273280.1| adenylate/guanylate cyclase with GAF sensor(s) [Arthrospira maxima CS-328] gi|209494877|gb|EDZ95185.1| adenylate/guanylate cyclase with GAF sensor(s) [Arthrospira maxima CS-328] Length = 1206 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 123/238 (51%), Gaps = 14/238 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q+ +L A ++ K++F VSHE RTPLT +IG E + NQ+ + Sbjct: 550 RQQAERLLEADRL-------KTEFFQNVSHEFRTPLTLMIGPLETVVNQQ-----QDLSL 597 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + A R+ +L +VN LLD+ + ++G+M F P L E + + + Y + K+I Sbjct: 598 DQAKIALRNSRRLLRLVNQLLDLQRFDAGRMQPSFRPCDLVEFCQQTVESFKSYCDRKQI 657 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + T+ + P++ DL ++ N+LSNA+ FTP+ G I +S N L V+DT Sbjct: 658 NLVTNL-QSCPQLYLDLERFDKVLYNLLSNAMKFTPTDGTITVSLQPEGNY-CRLMVKDT 715 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G+ +L + F Q S EG+GLGL L K +V+ + G+ + S +GT Sbjct: 716 GIGIKQEQLPHLFERFRQAEGSANRSFEGSGLGLALVKELVELHHGRITVESEYGQGT 773 >gi|171059425|ref|YP_001791774.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix cholodnii SP-6] gi|170776870|gb|ACB35009.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix cholodnii SP-6] Length = 446 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 92/367 (25%), Positives = 173/367 (47%), Gaps = 28/367 (7%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-EQNTPSVMNH 511 Q+ ++ + DG+ + + G + N A +++ G E + VFL NT H Sbjct: 89 QIDAVFALSPDGLVMFDALGRVSRVNAAFTRMTGLTAEMLHGVEEAVFLFRLNTRCTAPH 148 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL-PFSSCYSLTMHDISEWKQEKNK 570 L + SL ++ LG+ ++ S R +++ L P L ++ + + Sbjct: 149 LLVSLESL-------RVPLGADPADR--SGRDVVRLLRPAPRTLKLGLY--GGMHGQATQ 197 Query: 571 LSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 + H + I ++ KS+FLA +HE+RTP+ ++ GF+E++ + P R + Sbjct: 198 VLHLRDITREKQIDQMKSEFLATAAHELRTPMASVFGFTELLVTREMAP---QRRQDVLE 254 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGK-MNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + R ++ I+N+LLD+++IESG+ M+ FE L V + + A R I Sbjct: 255 RVYRQSGAMVSILNELLDLARIESGRGMDFEFEDTDLAALVRGVVHDFAVPAG--REAID 312 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS----TTHTSNEEVILRVR 742 A +P R D R ++Q N+LSNA ++P GG + ++ T + V + V Sbjct: 313 VGVAGELPLRARVDYRKLQQSMRNLLSNAYKYSPDGGPVRVAVRLDTGTSGGPWVAIAVH 372 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D G+G++ +L + + F ++ S + GTGLG+ + + + + + G I S +G+ Sbjct: 373 DRGIGLSAEQLARVGERFFRVDKSGAL--PGTGLGVSIVQQIAELHGGSLEIESRLGEGS 430 Query: 803 LIEIIFP 809 + P Sbjct: 431 TFTLRLP 437 >gi|162448894|ref|YP_001611261.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161159476|emb|CAN90781.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 918 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 116/227 (51%), Gaps = 5/227 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +FLA +SHE+RTPLTAI+G++ +++ P + R +E I+R+G L +V DL Sbjct: 544 KDEFLATLSHELRTPLTAILGWARMLRQGSLKPDTHVRALEA---IERNGTLQAQLVEDL 600 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD S+I +GK+ L V L ++ AI V+ A+ K I + N I D + Sbjct: 601 LDASRIITGKLRLDVMLVDLPPIINAAIDAVRHGADAKGIELLVQLDPNAGPISGDQTRL 660 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +Q+ N+LSNAI FTP GG++ I I +V DTG G+ L F Q Sbjct: 661 QQVVWNLLSNAIKFTPRGGKVSIQLGRAEGLARI-QVSDTGQGIVPEFLPYVFDRFRQAD 719 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-AKGTLIEIIFPL 810 ++ G GLGL +A+ +++ + G S KG + PL Sbjct: 720 STSTRPHSGLGLGLAIARHLIELHGGTVKAESAGDGKGATFTVDIPL 766 >gi|146301979|ref|YP_001196570.1| GAF sensor hybrid histidine kinase [Flavobacterium johnsoniae UW101] gi|146156397|gb|ABQ07251.1| GAF sensor hybrid histidine kinase [Flavobacterium johnsoniae UW101] Length = 653 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 78/239 (32%), Positives = 125/239 (52%), Gaps = 11/239 (4%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 N+L KKIAE K FLA +SHEIRTPL AIIGF+E++ PL + + + Sbjct: 161 NELLRQKKIAESAVLAKESFLANMSHEIRTPLNAIIGFTELLSGT---PL-DKQQQAFIQ 216 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + +G +L IVND+LD+SKIESG ++L +P +L +++ L+++ + + Sbjct: 217 DVQTAGENLLLIVNDILDLSKIESGGLSLEKQPFNLKKSLRHVYDLLKVKTADG-VEFNL 275 Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRD 743 +P ++ D + QI +N+ NA+ FT + G++ IS + E + V+D Sbjct: 276 FLDAELPDVITGDQGRLNQIMVNLAGNALKFT-NEGEVTISVKNKGETEDSYTIRFSVKD 334 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TG+G+ LE + F Q + GTGLGL + K +V + K + S G+ Sbjct: 335 TGIGIPKEHLESIFERFTQGQEDTTRKFGGTGLGLSIVKELVKLHDSKIQVKSREGAGS 393 >gi|2575807|dbj|BAA22997.1| adenylate cyclase [Arthrospira platensis] gi|291568632|dbj|BAI90904.1| adenylate cyclase [Arthrospira platensis NIES-39] Length = 1202 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 123/238 (51%), Gaps = 14/238 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q+ +L A ++ K++F VSHE RTPLT +IG E + NQ+ + Sbjct: 550 RQQAERLLEADRL-------KTEFFQNVSHEFRTPLTLMIGPLETVVNQQ-----QDLSL 597 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + A R+ +L +VN LLD+ + ++G+M F P L E + + + Y + K+I Sbjct: 598 DQAKIALRNSRRLLRLVNQLLDLQRFDAGRMQPSFRPCDLVEFCQQTVESFKSYCDRKQI 657 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + T+ + P++ DL ++ N+LSNA+ FTP+ G I +S N L V+DT Sbjct: 658 NLVTNL-QSCPQLYLDLERFDKVLYNLLSNAMKFTPTDGTITVSLQPEGNY-CRLMVKDT 715 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+G+ +L + F Q S EG+GLGL L K +V+ + G+ + S +GT Sbjct: 716 GIGIKQEQLPHLFERFRQAEGSANRSFEGSGLGLALVKELVELHHGRITVESEYGQGT 773 >gi|332702974|ref|ZP_08423062.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553123|gb|EGJ50167.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 447 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 95/366 (25%), Positives = 169/366 (46%), Gaps = 29/366 (7%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 S+ D +++R+G + N A L GY D+L T F P + Sbjct: 96 FASLFGRAVDAFVLVDRQGRLTDANPAACALVGYTRADLLGLALTAF---GKPVIRGWIG 152 Query: 514 TE-ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL- 571 E I L K + E + +L F +HD++ + + L Sbjct: 153 VEDIFGFAGESNLPKRAENQREIEPAFVADLPNGQLLF------ILHDVTRHHRLLDALV 206 Query: 572 --SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 S A +AEK K +FL+ +SHE+RTP+ I+G S +++ P P + +Y + Sbjct: 207 ETSQAATVAEKV---KHEFLSNMSHELRTPIGGILGLSTLLR-----PKVEPGHAQYLDL 258 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I +S + IV D+L+++ IE+ ++ + V L A+++ ++ A+ K + + Sbjct: 259 IIQSAESLSAIVGDILEMAHIEASQVAPNPGTVELAPALAQMFEEIRRQASAKDLEAILT 318 Query: 690 FANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRD 743 + +P +LA ++ K + N+LSNA+ FT S G + + H T E + V D Sbjct: 319 ISPRVPAQAVLAWEQTRKALD-NLLSNAVKFT-SKGWVNLFVDHCVDETGRECLYFAVTD 376 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G+G+ + +L + +PF Q+ +GTGLGL LAK + + G ++ S P +G+ Sbjct: 377 SGLGIASEDLPRLFQPFTQLERPLNKHTQGTGLGLALAKRLAELAGGSIWLDSEPGRGST 436 Query: 804 IEIIFP 809 + P Sbjct: 437 FHLRVP 442 >gi|226227766|ref|YP_002761872.1| phosphate regulon sensor protein PhoR [Gemmatimonas aurantiaca T-27] gi|226090957|dbj|BAH39402.1| phosphate regulon sensor protein PhoR [Gemmatimonas aurantiaca T-27] Length = 479 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 123/227 (54%), Gaps = 9/227 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 + DF+A VSHE+RTPLT I GF E +++++ P ++++ +D S + IV+DL Sbjct: 246 RRDFVANVSHELRTPLTVIGGFVETLQDEQLPPELRTQFLQ---MVDASVRRMQRIVDDL 302 Query: 645 LDISKIESGKMNLHFEPVSLDEAV--SEAISLVQLYANEKRILIRTSFANNIPRILADLR 702 LD+S+IESG P+ LD AV +E I+ ++ A K + + A R+ AD Sbjct: 303 LDLSRIESG--GWLPNPIELDVAVLAAEIIAPLERPAAAKGVALHVEIAPGAERVYADPT 360 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 + +QI N+ NA+ TP+G ++++ V + VRDTGVG+ L + + F + Sbjct: 361 AARQILTNLAENALRHTPTGSVTLLASPAEGG--VWIGVRDTGVGIGAEHLPRIFERFYR 418 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ GTGLGL + + + +A+ G+ ST GT I+ P Sbjct: 419 ADPARSREAGGTGLGLSIVRHLTEAHGGRVRADSTLHVGTTIQAWLP 465 >gi|218246908|ref|YP_002372279.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 8801] gi|218167386|gb|ACK66123.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC 8801] Length = 563 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 79/254 (31%), Positives = 129/254 (50%), Gaps = 14/254 (5%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L A AE+ S KSDFLA +HE+RTPL IIGF ++ + + E+ Sbjct: 304 QELEQATLAAEEASRLKSDFLASTTHELRTPLNGIIGFLRLVLDGMAD--DSQEQQEFLE 361 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 +S +L+++ND+LDI+KIE+GKM+L V L E + A KR+ + Sbjct: 362 EAHKSALHLLNLINDILDIAKIEAGKMDLEVGSVELAELFEAIDNFTLPQAQRKRLNYSS 421 Query: 689 SFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHTSNEE----V 737 + + I+ + + + Q+ LN++SNAI FT GG +I+ + + E + Sbjct: 422 KYPPTLTPIVLYGNYQRLLQVMLNLVSNAIKFTHDGGIDITAEIVKKKLYWRDREFPGMI 481 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 +RV DTG+G+ + K + F Q+ S GTGLGL +++ +V+A G+ +S Sbjct: 482 KVRVSDTGIGVALEKQAKLFEKFVQVDGSHSKAYGGTGLGLAISQKLVEAMGGQVEFYSM 541 Query: 798 -PAKGTLIEIIFPL 810 G+ + PL Sbjct: 542 GEGLGSTVTFTVPL 555 >gi|153807442|ref|ZP_01960110.1| hypothetical protein BACCAC_01722 [Bacteroides caccae ATCC 43185] gi|149129804|gb|EDM21016.1| hypothetical protein BACCAC_01722 [Bacteroides caccae ATCC 43185] Length = 930 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 80/257 (31%), Positives = 135/257 (52%), Gaps = 23/257 (8%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +DI+E K+ + +L A+ AE KS FLA +SHEIRTPL AIIGFS+++ L Sbjct: 685 YDITELKETEAELILARDKAEMADRLKSAFLANMSHEIRTPLNAIIGFSDLLVEAE--NL 742 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + EY + + L+L ++ D+LD+SKIE+G V ++ + + +Q+ Sbjct: 743 EERK--EYVKIVRNNNELLLQLITDILDLSKIEAGTFEFSCGDVDVNLLCEDIVCCMQMK 800 Query: 679 ANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 +E+ L+ F +++P+ I++D + Q+ LN ++NAI FT G I EE Sbjct: 801 VHEEVELL---FDSHLPQCHIISDRNRLHQVILNFVNNAIKFTSQGS--IRVGYQVKGEE 855 Query: 737 VILRVRDTGVGMTNYE----LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + + V+DTGVG+ + E+ +K +P GTGLGL + +++++ G+ Sbjct: 856 LEVYVQDTGVGIDEEQQLHIFERFVKLNSFVP--------GTGLGLSICQSIIEQLGGRI 907 Query: 793 YIFSTPAKGTLIEIIFP 809 + S KG+ P Sbjct: 908 GVDSELGKGSRFWFRLP 924 >gi|320354358|ref|YP_004195697.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320122860|gb|ADW18406.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 636 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 134/239 (56%), Gaps = 14/239 (5%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 LS A++ A + KS+F+A ++HE+RTP+ AIIG++E++ N L P+ + I Sbjct: 154 LSQAEESANR---MKSEFIANINHEVRTPMNAIIGYTEMLAN---STLLGPKEKRFVAII 207 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 +S ++ I ND++++SKI+SG++ + + L + E SL + A EK I++ + Sbjct: 208 HKSSMALVAIFNDIMELSKIDSGRLQIMTSSIRLPTLIREVESLFKDQAEEKGIVLISRI 267 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRVRD 743 A ++P+ + D +KQ+ N++SNAI FT S GQ+ ++ ++++ ++ ++D Sbjct: 268 AGHVPQNFILDGTRLKQVLQNLISNAIKFT-SEGQVELTVDGSASKAQAGCYDLSFTIQD 326 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+G+ + +K + F Q ++ R G GLGL L +V G+ + S +G Sbjct: 327 SGIGIPAADQQKIFELFRQREDTIAKRYGGVGLGLTLCSRLVTMMGGRIDLLSKEGEGA 385 >gi|325109812|ref|YP_004270880.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324970080|gb|ADY60858.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 1097 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 131/261 (50%), Gaps = 14/261 (5%) Query: 549 PFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 P SS C + D + KQ + L AK AEK S+ KS+FLA +SHE+RTPL +IG + Sbjct: 539 PASSLCIGFVL-DATRQKQTEANLLAAKLTAEKASAAKSEFLATMSHELRTPLNGVIGMT 597 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 +++ N + ++A SG +L +++D+LD+SK+E+G++ L +P L Sbjct: 598 QLLMNTEL----DSDQHQFARACHSSGKTLLALISDILDLSKVEAGRLELEQQPFRLGNL 653 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRIL---ADLRSVKQIALNILSNAIHFTPSGGQ 724 ++E + + + + P L D + ++ +N+L NA FTP G Sbjct: 654 ITEVEDSTRPALEADGLTFQNT--RQFPEGLVLRGDRVRLLRVLMNLLGNAGKFTPEGSI 711 Query: 725 IIISTTHTSNEEVI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 +++ +E+ + DTG+G+ + + F Q+ +S R G+GLGL + Sbjct: 712 SLVTRMEQPSEDTADLHFSITDTGIGIEGSKQGRLFDAFTQLDSSTTRRYGGSGLGLAIC 771 Query: 782 KAMVDANMGKFYIFSTPAKGT 802 K +V+A G+ + S G+ Sbjct: 772 KHLVEAMEGEIGVESELGHGS 792 >gi|206602092|gb|EDZ38574.1| Putative multi-sensor signal transduction histidine kinase [Leptospirillum sp. Group II '5-way CG'] Length = 453 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 89/368 (24%), Positives = 178/368 (48%), Gaps = 26/368 (7%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 RK++ + ++++ +G+ + + +G IL NRA + F VE +R L + Sbjct: 95 RKLKEASSRFAAVMDHMEEGVVVTDLKGKILLVNRAFFRFF--KVEGDVRGESFGLLARK 152 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-RIIIKKLPFSSCYSL-TMHDIS 562 T +N + ++L + R +++T T + SL + + + + + D++ Sbjct: 153 TG--INDLIEDVLQ-NRRSVQKEVTFSETTPARTWSLVGTTARGSGETDVFGIFLLFDLT 209 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + +Q L +K DF+A VSHEIRTPLT+I GF+E + + G + +P+ Sbjct: 210 DIRQ----LERIRK----------DFVANVSHEIRTPLTSIRGFAEALHD---GGINDPK 252 Query: 623 YI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 E++ I + +IV+DLL +S++E+GK + + VSL ++ + +A + Sbjct: 253 TAREFSGIILSHAERLGNIVSDLLHLSELETGKAIMRYGSVSLSRQIAHIRDVYADHARK 312 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 K I D + + N++ NA+ +TP GG++ + ++ V Sbjct: 313 KGIRFIVQLPEETLTYETDEGKMDLVLGNLVDNALKYTPEGGEVFFGGWR-EGDAIVFEV 371 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RD+GVG+ E+++ + F ++ ++ GTGLGL + + +++ G + S+P +G Sbjct: 372 RDSGVGIPRTEVDRIFERFYRVDRARSREMGGTGLGLSIVRHILEILQGTVRVTSSPGQG 431 Query: 802 TLIEIIFP 809 + + P Sbjct: 432 STFLVRVP 439 >gi|299136566|ref|ZP_07029749.1| multi-sensor hybrid histidine kinase [Acidobacterium sp. MP5ACTX8] gi|298601081|gb|EFI57236.1| multi-sensor hybrid histidine kinase [Acidobacterium sp. MP5ACTX8] Length = 931 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 81/252 (32%), Positives = 128/252 (50%), Gaps = 22/252 (8%) Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFS------EVIKNQRFGPLGNPRYIEYANY 629 + AE S KS+FLA +SHEIRTPL IIG + E+ + QR +Y Sbjct: 277 RAAEASSQAKSEFLANMSHEIRTPLNGIIGMTDLALETELTQEQR----------DYLET 326 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + SG+ +L+++ND+LD SKIE+GK+ L +L + + + L A+EK + + Sbjct: 327 VKLSGDALLNVINDILDFSKIEAGKIELEEIDFNLCNCIEGTLKTLALRADEKGLELLCD 386 Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--VILR--VRDT 744 + +I +++ D ++QI LN++ NAI FT S G+I + EE IL + DT Sbjct: 387 VSPHIAEVVSGDPGRLRQILLNVIGNAIKFT-SKGEISLKVKSDLIEEKKSILHFIITDT 445 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ +L F Q S GTGLGL +++ +V+ GK ++ S G+ Sbjct: 446 GIGIAPEKLTTIFDSFNQADTSTTREFGGTGLGLTISRCLVEMMGGKLWVESEVGVGSQF 505 Query: 805 EIIFPLYDTSHP 816 P+ P Sbjct: 506 HFTIPMKYVDTP 517 >gi|237718511|ref|ZP_04548992.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229452218|gb|EEO58009.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1333 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 127/233 (54%), Gaps = 14/233 (6%) Query: 564 WKQEKNKLSHAKKIAE-KESSHKSDFLARVSHEIRTPLTAIIG-FSEVIKNQRFGPLGNP 621 +K+ ++KL + I E KE K FL +SHEIRTP++ II ++I+N L Sbjct: 775 YKRYQSKLEIKRYIQEEKEKEAKLQFLINISHEIRTPMSLIISPLQKLIENDEDTSLRKR 834 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF---EPVSLDEAVSEAISLVQLY 678 Y + + R+ + +L++VN LLD+ KIE G+M+L F E VS E V E + +QL+ Sbjct: 835 NY----SLMYRNAHRILNLVNQLLDVRKIEKGQMHLLFKQTEMVSFIEDVCE--NFIQLF 888 Query: 679 ANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 K I +R ++ ++ D + +I N+LSNA FTP GG+++I T T+ Sbjct: 889 T-RKNIKLRFVHSDIEQLKLWIDPSNFDKIIFNLLSNAFKFTPEGGEVVIELTQTTQSAQ 947 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 I+ VRDTG G+ + EK F Q GTG+GL L +++V+ + G Sbjct: 948 IV-VRDTGKGLIEADKEKIFDRFFQSKQDSNGAAIGTGIGLNLTRSLVELHHG 999 >gi|53716107|ref|YP_106501.1| sensory box histidine kinase/response regulator [Burkholderia mallei ATCC 23344] gi|121596954|ref|YP_990599.1| sensory box histidine kinase/response regulator [Burkholderia mallei SAVP1] gi|126446255|ref|YP_001079435.1| sensory box histidine kinase/response regulator [Burkholderia mallei NCTC 10247] gi|167003184|ref|ZP_02268974.1| sensory box histidine kinase/response regulator [Burkholderia mallei PRL-20] gi|254176005|ref|ZP_04882663.1| sensory box histidine kinase/response regulator [Burkholderia mallei ATCC 10399] gi|254203510|ref|ZP_04909871.1| sensory box histidine kinase/response regulator [Burkholderia mallei FMH] gi|52422077|gb|AAU45647.1| sensory box histidine kinase/response regulator [Burkholderia mallei ATCC 23344] gi|121224752|gb|ABM48283.1| sensory box histidine kinase/response regulator [Burkholderia mallei SAVP1] gi|126239109|gb|ABO02221.1| sensory box histidine kinase/response regulator [Burkholderia mallei NCTC 10247] gi|147745749|gb|EDK52828.1| sensory box histidine kinase/response regulator [Burkholderia mallei FMH] gi|160697047|gb|EDP87017.1| sensory box histidine kinase/response regulator [Burkholderia mallei ATCC 10399] gi|243061229|gb|EES43415.1| sensory box histidine kinase/response regulator [Burkholderia mallei PRL-20] Length = 771 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 100/380 (26%), Positives = 172/380 (45%), Gaps = 23/380 (6%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +R+ L ++EA+ D I + I S N A ++FGY ++ + V + Sbjct: 245 ERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGY--DEHAARGCDVAMLI 302 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSC--YSLT 557 + NH L E + D+R+ +E + + +++ +R + P +C SLT Sbjct: 303 APRWLRNHPLPESVP-DMREPIENVDVLCVRQDGG-RMRATMSASPVFDERDACIALSLT 360 Query: 558 MHDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + D E ++ + A++ A+ + K + LA VSHE+RTPL I G+ EV+ Sbjct: 361 LRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVL 420 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +N P+ + + IDRS + +V D+LD S + +GK+ L PV L V++ Sbjct: 421 RN----PVDGALQQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVND 476 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + A I + A + D ++Q+ N+LSNA FTP GG++ +S Sbjct: 477 VTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLE 536 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + L V DTG G++ L + F + + G GLGL + + + + + G Sbjct: 537 R-HDAQAKLTVADTGHGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGG 595 Query: 791 KFYIFSTPA-KGTLIEIIFP 809 K S +GT I P Sbjct: 596 KVEAASAGKNRGTTFAITLP 615 >gi|86751330|ref|YP_487826.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] gi|86574358|gb|ABD08915.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] Length = 877 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 83/283 (29%), Positives = 143/283 (50%), Gaps = 24/283 (8%) Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE-WKQEKNKLSHAKKIAEKESSHKS 586 + +G T+ L+ R ++ + Y D++E W+ E+ AE E+ KS Sbjct: 322 VMIGGTQRLWSLTARPMLDHNGEFTGYRGVGRDVTERWRAEQ---------AEAENRAKS 372 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 DFLA +SHEIRTP+ ++G + + + +P I SG+ +L I+ND+LD Sbjct: 373 DFLAMMSHEIRTPMNGVLGLANSLLETKL----DPEQQHAVTTIRDSGDNLLRILNDILD 428 Query: 647 ISKIESGKM---NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLR 702 +SK+E+G++ ++F P L +AV S+V+ A K + ++ +P L D + Sbjct: 429 LSKLEAGRIEFEQVNFSPSVLVDAVR---SIVEPNARAKGLTLKIDVDPRLPPALTGDAQ 485 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKP 759 ++Q+ LN+ NA+ FT GG I+ T ++ + +V DTG+G+ + Sbjct: 486 RIRQVLLNLAFNAVKFTDRGGVTIVLTCVRRDDAYATIEWQVTDTGIGIPLDRVGSLFTD 545 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 F Q S R GTGLGL +++ +V+ G + S P +G+ Sbjct: 546 FAQGDVSINRRFGGTGLGLAISRRIVEQMGGAIDVTSKPGEGS 588 >gi|59712745|ref|YP_205521.1| chitin sensor histidine kinase ChiS [Vibrio fischeri ES114] gi|59480846|gb|AAW86633.1| chitin sensor histidine kinase ChiS [Vibrio fischeri ES114] Length = 1126 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 73/242 (30%), Positives = 122/242 (50%), Gaps = 10/242 (4%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 N+L A K+ K +FLA SHE+RTPL ++G +E + GP+ + + Sbjct: 444 NELEAADKL-------KDEFLATTSHELRTPLHGMVGIAEALYTGANGPI-SASHRHQLE 495 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I SG + +VNDLLD K+ G ++++ L A S + L Q K I I Sbjct: 496 IIINSGQRLTSLVNDLLDYHKMRHGNLDINKHVTDLSSATSLVLELSQHLLGNKSIRIIN 555 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 ++P + D + ++Q+ N++ NAI +T S G+I+IS + ++ + ++V DTG G+ Sbjct: 556 QVDKSLPVVFVDEQRLEQVLYNLIGNAIKYT-SEGKIVISAS-VVDQFLRVQVVDTGHGI 613 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 ELE +P Q + +G+GLGL +++ +++ G Y+ S P G Sbjct: 614 PADELEHIFEPLIQAGHDSNRYRQGSGLGLSISRQLIELMGGSLYVSSQPMVGATFSFTL 673 Query: 809 PL 810 PL Sbjct: 674 PL 675 >gi|189466203|ref|ZP_03014988.1| hypothetical protein BACINT_02573 [Bacteroides intestinalis DSM 17393] gi|189434467|gb|EDV03452.1| hypothetical protein BACINT_02573 [Bacteroides intestinalis DSM 17393] Length = 885 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 81/250 (32%), Positives = 121/250 (48%), Gaps = 11/250 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI++ + K +L AK+ AE KS FLA +SHEIRTPL AIIGFS +I Sbjct: 487 DITDMELMKRELMVAKEKAETSDQLKSAFLANMSHEIRTPLNAIIGFSRIIAESE----N 542 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 EY N ++ + +L ++N++LD+SKIE+G + PV L E I ++ Sbjct: 543 TEERKEYYNIVEANNERLLQLINEILDLSKIEAGIVEFSIAPVRLYPLCKE-IHDAHVFR 601 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + + ++ RI +D + Q+ N++ NA FT G I H E +I Sbjct: 602 CPSDVELIFEPSDEDIRIDSDKNRIFQVISNLIGNAFKFTTHGS--ISYGYHQEGENIIF 659 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG G+ ++ K + F + N Q GTGLGL + K +++ G + S Sbjct: 660 HVTDTGTGIAPEKIGKVFERFVKANNFAQ----GTGLGLAICKTIIERLGGTISVTSELE 715 Query: 800 KGTLIEIIFP 809 KGT P Sbjct: 716 KGTTFTFNLP 725 >gi|114571557|ref|YP_758237.1| histidine kinase [Maricaulis maris MCS10] gi|114342019|gb|ABI67299.1| histidine kinase [Maricaulis maris MCS10] Length = 657 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 116/237 (48%), Gaps = 10/237 (4%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E KS F A V+HE+RTPL +G S +++ P +Y I S + L Sbjct: 166 EASQRAKSLFFAAVTHELRTPLAGALGVSRLLEGTAL----KPDQADYVRSIAASADHAL 221 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RI 697 +V+D+LD+S++E+G++ L E V + E V E + L A EK + I A P R+ Sbjct: 222 AMVDDILDLSRLEAGRLELRPETVDIAELVRETVELAAPRAQEKALEIGVVHAFGAPTRV 281 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYEL 753 D +KQI N++ NA+ FT +GG + I T+ + E + L V DTG G++ + Sbjct: 282 TGDAARLKQILYNLIGNAVKFTAAGG-VRIDITNAPDSEGRDRLALSVSDTGPGISEADQ 340 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 E + F + + G GLGL + + + DA + S +G +IF L Sbjct: 341 ESLFEHFERGAAERDGAESGAGLGLAMVRRLADAMNSAMGVESRLGEGARFWLIFDL 397 >gi|91226808|ref|ZP_01261461.1| sensor histidine kinase FexB [Vibrio alginolyticus 12G01] gi|269965795|ref|ZP_06179891.1| Aerobic respiration control sensor protein ArcB [Vibrio alginolyticus 40B] gi|91188939|gb|EAS75223.1| sensor histidine kinase FexB [Vibrio alginolyticus 12G01] gi|269829593|gb|EEZ83831.1| Aerobic respiration control sensor protein ArcB [Vibrio alginolyticus 40B] Length = 784 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 94/376 (25%), Positives = 187/376 (49%), Gaps = 29/376 (7%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-KPFTVFLEQNTPSVMNHY 512 L S ++A+ D I N +G+ NRA+ +L G ++ P+ V+ ++ +++ Sbjct: 157 LRSFIDASPDLIYYRNADGVFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEIAEHIVDTD 216 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM------HDISEWKQ 566 ++ + + T E+ + LR K+PF S + DI+E K+ Sbjct: 217 -QKVFADNQAITYEQWLEYPDGRKHYFELR----KVPFYSKDGRHLGLVGFGRDITERKR 271 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + L EK S K+ F++ +SHE+RTPL I+G S ++ + PL + ++ Sbjct: 272 HEESL-------EKASRDKTTFISTISHELRTPLNGIVGLSRMLLD---SPLTEEQR-KH 320 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I+ S + +I ND++D+ K + K+ L P++ ++ V+E S+ L A +K + Sbjct: 321 MQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVAEIESISALMAEQKGLRF 380 Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--EVILRVRD 743 +++P+ I D ++Q+ N++SNA+ FT GG ++ + ++ +I+ V D Sbjct: 381 DLERLSDLPKAIEVDATRLRQVIWNLVSNAMKFTKEGGVVMTVSADVEDDFATIIMEVED 440 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQ-IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TG+G+ + EL+K + Q+ + + + GTG+GL ++K +++ G + S G+ Sbjct: 441 TGIGIPDEELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSKQLINMMDGDITVTSEEGFGS 500 Query: 803 --LIEIIFPLYDTSHP 816 + I P+ + + P Sbjct: 501 TFTVSIHVPIVELAEP 516 >gi|197335474|ref|YP_002156937.1| two-component sensor histidine kinase [Vibrio fischeri MJ11] gi|197316964|gb|ACH66411.1| two-component sensor histidine kinase [Vibrio fischeri MJ11] Length = 1126 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 73/242 (30%), Positives = 122/242 (50%), Gaps = 10/242 (4%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 N+L A K+ K +FLA SHE+RTPL ++G +E + GP+ + + Sbjct: 444 NELEAADKL-------KDEFLATTSHELRTPLHGMVGIAEALYTGANGPI-SASHRHQLE 495 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I SG + +VNDLLD K+ G ++++ L A S + L Q K I I Sbjct: 496 IIINSGQRLTSLVNDLLDYHKMRHGNLDINKHVTDLSSATSLVLELSQHLLGNKSIRIIN 555 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 ++P + D + ++Q+ N++ NAI +T S G+I+IS + ++ + ++V DTG G+ Sbjct: 556 QVDKSLPVVFVDEQRLEQVLYNLIGNAIKYT-SEGKIVISAS-VVDQFLRVQVVDTGHGI 613 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 ELE +P Q + +G+GLGL +++ +++ G Y+ S P G Sbjct: 614 PADELEHIFEPLIQAGHDSNRYRQGSGLGLSISRQLIELMGGSLYVSSQPMVGATFSFTL 673 Query: 809 PL 810 PL Sbjct: 674 PL 675 >gi|149277586|ref|ZP_01883727.1| sensory transduction histidine kinase [Pedobacter sp. BAL39] gi|149231819|gb|EDM37197.1| sensory transduction histidine kinase [Pedobacter sp. BAL39] Length = 763 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 131/249 (52%), Gaps = 12/249 (4%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+ K + +L +AK +AE+ ++ KS+FL+ +SHEIRTP+ A+IGF+ ++ Sbjct: 367 DITRRKIAEQELINAKVVAEQAANAKSEFLSTMSHEIRTPMNAVIGFTNLLLQN------ 420 Query: 620 NP--RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 NP +EY N + SG +L ++ND+LD SKI+ GK++ +L E + + Sbjct: 421 NPAQEQLEYLNLLKFSGENLLVLINDILDFSKIQEGKISFEMIGFNLPELLEKIRKTFMQ 480 Query: 678 YANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE 735 A +K + L T + I I+ D + QI +N+++N+I FT SG I + H E Sbjct: 481 AARDKGLELTLTVDQSIINSIVGDPVRLGQILINLITNSIKFTSSGSVSIDVWKEHEDLE 540 Query: 736 EVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + + + DTG+G+ + F Q + + GTGLGL + K +++ G Sbjct: 541 HITICFEIADTGIGIAEDRIADIFDRFTQASSDTNRKYGGTGLGLSITKQLIELQGGSLS 600 Query: 794 IFSTPAKGT 802 + S +G+ Sbjct: 601 VTSKLNEGS 609 >gi|302343588|ref|YP_003808117.1| multi-sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] gi|301640201|gb|ADK85523.1| multi-sensor signal transduction histidine kinase [Desulfarculus baarsii DSM 2075] Length = 483 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 92/372 (24%), Positives = 188/372 (50%), Gaps = 31/372 (8%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 M IE + ++E+ ++G+ +I+ E ++ N A+ +L + ++L + LE+ P Sbjct: 131 MAIEKSRTRVLVESMTNGVLVIDTERRVVLMNPALRRLARWDEGEVLGRD----LEEALP 186 Query: 507 S-VMNHYLTEILS----LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561 + L+E+L+ D + +ITLG +E + + + PF + + Sbjct: 187 CPAVAQALSEVLAGQGDQDGQSVSCQITLGLAEE----PMHLQVTCSPFLDSRGRLVGAL 242 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 + + + ++ +++ E KS++++ V+HEI +PL++++ + + G L Sbjct: 243 AVF----DDVTALRRLDE----LKSEYVSTVAHEIASPLSSVLSQLQNLSQGLAGELN-- 292 Query: 622 RYIEYANYIDRSGNL----VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 E I R L ++++ DLLD+SKIE+G M E +++ + EA+ +++ Sbjct: 293 ---ERQGQIVRRARLRIEGIINLSKDLLDLSKIEAGAMGQAEERLAVGPILEEAVDIMRA 349 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A +K + A +PR+ R ++++ +N++SNA+ +TP GG+I + T + V Sbjct: 350 KAADKAQSLTLEMAAELPRVAGVQRELQEVFVNLISNAVRYTPQGGRIDVRAT-AQDGWV 408 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V D G G+ + EK + F ++ ++ GTGLGLP+ K +V+A G + S Sbjct: 409 RVDVSDNGFGVPIEDQEKIFQRFYRVKDANTRNIIGTGLGLPIVKRVVEAMGGNVRLRSK 468 Query: 798 PAKGTLIEIIFP 809 P +G+ ++ P Sbjct: 469 PGQGSTFSVLLP 480 >gi|259047883|ref|ZP_05738284.1| sensory box histidine kinase VicK [Granulicatella adiacens ATCC 49175] gi|259035560|gb|EEW36815.1| sensory box histidine kinase VicK [Granulicatella adiacens ATCC 49175] Length = 618 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 98/383 (25%), Positives = 176/383 (45%), Gaps = 59/383 (15%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E E +L S+L SDG+ +R G I+ N A + E I+ P Sbjct: 261 EAERQRLDSVLRHMSDGVIATDRRGRIVIINAAALDVLNLRNERIIGTP----------- 309 Query: 508 VMNHYLTEILSLD----LRQTLEK-----ITLGSTKEEKLLS--LRIIIKKLPFSSCYSL 556 L E+L LD R LE IT+ EE ++ + +I ++ F S Sbjct: 310 -----LLEVLRLDHSVSFRDLLESQEERMITIEEDGEETIVQCEISVIQRESGFISGLVC 364 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-----K 611 + D++E EK + +F++ VSHE+RTPLT+I ++E + + Sbjct: 365 VLTDVTE--------------QEKIDRERRNFVSNVSHELRTPLTSIKSYTEALVDGAWE 410 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 N+ P E+ N I+ + ++ ++ DLL++S+++ ++ L E V+++E V Sbjct: 411 NKEIAP-------EFLNVIETETDRMMRMITDLLNLSRMDQNRLELDKEFVNMNELVKHI 463 Query: 672 ISLVQLYAN-----EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 ++ + EK I T + D + Q+ NI++NAI ++P GG+II Sbjct: 464 VNRFDMVLQSDQYREKNYRILTDITQRNLWVEIDQDKMTQVLDNIINNAIKYSPDGGRII 523 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + T + ++I+ V D G+G+ ++ F ++ ++ G+GLGL ++K +V Sbjct: 524 VRLMET-HTDLIVSVSDEGLGVPRKDIPHLFDRFYRVDKARSRAMGGSGLGLAISKEVVQ 582 Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809 + GK ++ S KG+ I P Sbjct: 583 LHGGKIWVNSIENKGSTFFISLP 605 >gi|109391496|gb|ABG33876.1| Yen1 [Yersinia sp. MH-1] Length = 1522 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 79/258 (30%), Positives = 131/258 (50%), Gaps = 10/258 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI++ ++ +N L A++ AEK + KS FLA +SHE+RTP+ AI+G +++ Sbjct: 745 RDITQQREAENILKTAREAAEKANKAKSAFLANMSHELRTPMNAILGMLTLLRRTGL--- 801 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + +YA + + +L ++ND+LD SKIESGKM L P + + + ++ Y Sbjct: 802 -DRKQADYAVKSEAATRTLLRLLNDILDFSKIESGKMELECIPFDIHIMLRDLAVILSSY 860 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEE 736 K++ + ++P+ + D ++QI N+ NA+ FT G ++ I + + Sbjct: 861 LKVKKVEVLFDIDPSLPQFVEGDSMRLQQILTNLGGNALKFTELGEVVLFIKVIAQDSHQ 920 Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V L VRDTG+G+ E F Q S R GTGLGL +++ V G + Sbjct: 921 VTLHFGVRDTGIGIAPENQESIFSGFTQAEASTTRRFGGTGLGLVISQRFVALMGGTLTL 980 Query: 795 FSTPAKGTLIE--IIFPL 810 S +G+L I PL Sbjct: 981 ESQLGQGSLFHFTITLPL 998 >gi|311748172|ref|ZP_07721957.1| sensory box histidine kinase/response regulator [Algoriphagus sp. PR1] gi|126576660|gb|EAZ80908.1| sensory box histidine kinase/response regulator [Algoriphagus sp. PR1] Length = 1356 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 85/265 (32%), Positives = 140/265 (52%), Gaps = 16/265 (6%) Query: 555 SLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 S+ +H DI++ K+ + +L ++ AEK K F A +SHEIRTP+ AI+G E + Sbjct: 830 SIGIHLDITDQKRLEEELIRQREEAEKSKRAKEIFFANMSHEIRTPMNAIVGMGEQLAKS 889 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEAVSE 670 N + +Y I S + ++ I+ D+LD+SK+E+GKM + F+P ++ E E Sbjct: 890 AL----NDQQNKYIKAIQDSASHLMVIIKDILDLSKLEAGKMTIEAIGFKPKNIIEHTFE 945 Query: 671 AI-SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII--- 726 + + + + IL S N + ++ D + QI LN+LSNAI FT G ++ Sbjct: 946 MMKAKAESKGLDYSILNYDSRINEV--LIGDPIRISQILLNLLSNAIKFTEKGKVVLQCH 1003 Query: 727 -ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 IS T S++E+ V DTG+GM + + + + Q + + GTGLGL ++K +V Sbjct: 1004 SISETE-SHQEIKFSVIDTGIGMDDDFVNSNFEKYVQEDTTITRKFGGTGLGLSISKELV 1062 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810 G+ I S GT++ + F L Sbjct: 1063 QLMGGQMKIESQKGLGTIVSVNFKL 1087 >gi|83944133|ref|ZP_00956589.1| two-component hybrid sensor and regulator [Sulfitobacter sp. EE-36] gi|83845000|gb|EAP82881.1| two-component hybrid sensor and regulator [Sulfitobacter sp. EE-36] Length = 550 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 75/255 (29%), Positives = 127/255 (49%), Gaps = 16/255 (6%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + +HDI+E + E+ +L ++DF++ VSHE+R+PLT+I G ++ ++ Sbjct: 294 IMLHDITE-RLEQEQL-------------QADFISMVSHELRSPLTSIKGSMGLLLSKAA 339 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L P+ R+ + ++ I+ND+LD+ KI SG+++ E L E V+E++ Sbjct: 340 GQL-PPKAEGLLEIAHRNADRLVLIINDILDMEKISSGRLDFELETADLSELVAESLRAN 398 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + I+ + I D + Q+ N++SNA F+ GG + IS T E Sbjct: 399 ATAHQRFGLQIKCHGVDTPTYIETDANRIIQVLTNLMSNAAKFSKPGGTVEISVDKTP-E 457 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V + VRD G+G+ + K + F + NS + GTGLGL + KA+V+ G Sbjct: 458 NVCVSVRDEGMGIAPEDQHKIFQRFADMANSDRATKGGTGLGLSICKAIVEGLGGTIDFV 517 Query: 796 STPAKGTLIEIIFPL 810 S +GT P+ Sbjct: 518 SKEGRGTTFTFTLPV 532 >gi|83955168|ref|ZP_00963824.1| two-component hybrid sensor and regulator [Sulfitobacter sp. NAS-14.1] gi|83840497|gb|EAP79670.1| two-component hybrid sensor and regulator [Sulfitobacter sp. NAS-14.1] Length = 550 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 127/255 (49%), Gaps = 16/255 (6%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + +HD++E + E+ +L ++DF++ VSHE+R+PLT+I G ++ ++ Sbjct: 294 IMLHDVTE-RLEQERL-------------QADFISMVSHELRSPLTSIKGSMGLLLSKAA 339 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L P+ R+ + ++ I+ND+LD+ KI SG+++ E L E V+E++ Sbjct: 340 GQL-PPKAEGLLEIAHRNADRLVLIINDILDMEKISSGRLDFELETADLSELVAESLRAN 398 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + I+ + I D + Q+ N++SNA F+ GG + IS T E Sbjct: 399 ATAHQRFGLQIKCHGVDTPTYIETDANRIIQVLTNLMSNAAKFSKPGGTVEISVEKTP-E 457 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V + VRD G+G+ + K + F + NS + GTGLGL + KA+V+ G Sbjct: 458 NVCVSVRDEGMGIAPEDQHKIFQRFADMANSDRATKGGTGLGLSICKAIVEGLGGTIDFV 517 Query: 796 STPAKGTLIEIIFPL 810 S +GT P+ Sbjct: 518 SKEGRGTTFTFTLPV 532 >gi|67639970|ref|ZP_00438795.1| sensory box histidine kinase/response regulator [Burkholderia mallei GB8 horse 4] gi|238520599|gb|EEP84057.1| sensory box histidine kinase/response regulator [Burkholderia mallei GB8 horse 4] Length = 757 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 100/380 (26%), Positives = 172/380 (45%), Gaps = 23/380 (6%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +R+ L ++EA+ D I + I S N A ++FGY ++ + V + Sbjct: 231 ERERSAASQMLRRLVEASPDAIVGVGSNRRITSWNPAARRMFGY--DEHAARGCDVAMLI 288 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSC--YSLT 557 + NH L E + D+R+ +E + + +++ +R + P +C SLT Sbjct: 289 APRWLRNHPLPESVP-DMREPIENVDVLCVRQDGG-RMRATMSASPVFDERDACIALSLT 346 Query: 558 MHDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + D E ++ + A++ A+ + K + LA VSHE+RTPL I G+ EV+ Sbjct: 347 LRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVL 406 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +N P+ + + IDRS + +V D+LD S + +GK+ L PV L V++ Sbjct: 407 RN----PVDGALQQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVND 462 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + A I + A + D ++Q+ N+LSNA FTP GG++ +S Sbjct: 463 VTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSLE 522 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + L V DTG G++ L + F + + G GLGL + + + + + G Sbjct: 523 R-HDAQAKLTVADTGHGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHGG 581 Query: 791 KFYIFSTPA-KGTLIEIIFP 809 K S +GT I P Sbjct: 582 KVEAASAGKNRGTTFAITLP 601 >gi|90422866|ref|YP_531236.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] gi|90104880|gb|ABD86917.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] Length = 895 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 79/259 (30%), Positives = 130/259 (50%), Gaps = 24/259 (9%) Query: 552 SCYSLTMHDISE-WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + Y D++E W+ E+ AE E+ KS+FLA +SHEIRTP+ ++G + ++ Sbjct: 346 AGYRGVGRDVTERWRAER---------AEAENRAKSEFLAIMSHEIRTPMNGVLGLANML 396 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH---FEPVSLDEA 667 +P I SG+ + I+ND+LD+SK+E+G+ F P +L EA Sbjct: 397 LETDL----DPEQHHAVETIRESGDNLQRILNDILDLSKLEAGRFQFETVDFSPAALVEA 452 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII 726 V S+V+ A K + I + +P+ L D+ ++Q+ LN+ SNA+ FT G I Sbjct: 453 VC---SVVRSSAKAKGLEIERAIDPGLPKGLNGDMARIRQVLLNLASNAVKFTDRGRVTI 509 Query: 727 IS--TTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 ++ + V+ RV DTG+G+ + + F Q S R GTGLGL +++ Sbjct: 510 MANCVSQADGRAVVEWRVADTGIGIATDRVGQLFSDFAQADVSINRRFGGTGLGLAISRR 569 Query: 784 MVDANMGKFYIFSTPAKGT 802 +V+ G + S G+ Sbjct: 570 IVEQMGGAIDVSSEQGSGS 588 >gi|229522276|ref|ZP_04411692.1| sensor protein TorS [Vibrio cholerae TM 11079-80] gi|229340261|gb|EEO05267.1| sensor protein TorS [Vibrio cholerae TM 11079-80] Length = 984 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 79/255 (30%), Positives = 125/255 (49%), Gaps = 10/255 (3%) Query: 561 ISEWKQEKNK--LSHAK--KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 +SE + N+ L+HAK + AE+ S KS FLA +SHEIRTP+ ++G + ++++ Sbjct: 442 LSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLT 501 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 Y I+RSG +L I+ND+LD SKIE+G + +H L V E L+Q Sbjct: 502 ATQQ----HYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQ 557 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A EK I + ++ + D + Q+ N++ N I FT G I + Sbjct: 558 SRAREKAITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQ 617 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V D+G+G+ E F Q ++ G GTGLGL +++ +V A G+ + Sbjct: 618 GIRFAVEDSGIGIAEEEQATLFDAFTQADAGRRKLG-GTGLGLAISRKLVQAMGGELQLA 676 Query: 796 STPAKGTLIEIIFPL 810 S +G+ PL Sbjct: 677 SQLGQGSCFGFTLPL 691 >gi|159899621|ref|YP_001545868.1| GAF sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159892660|gb|ABX05740.1| GAF sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 1211 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 103/439 (23%), Positives = 203/439 (46%), Gaps = 58/439 (13%) Query: 412 AMTFIPFEKANQ--------FPENMPQNGIEPEDV--------DTRINKRKMEIEVM--- 452 A+ +P +Q +PE +P E +D+ + R++ EV Sbjct: 790 ALVMLPLLATHQTLGVIYLWYPETLPNR--EAQDLLSLFVGQAAVAVETRRLAEEVSNGR 847 Query: 453 -QLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMN 510 +L SIL +T +GI +++ + ++ N A + G V ++L +P + L T Sbjct: 848 DRLASILASTEEGIILLSADLRVVEVNAAAQTMIGSNEVAELLGEPVDLLL---THWCAQ 904 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEK-------LLSLRIIIKKLPFSSCYSLTMHDISE 563 +E +L + K++ G E + L S + LP S + + H I Sbjct: 905 WNKSEEAWSELTLAIYKVSRGRLAEARGQLELGGLRSQWLEWTTLPVQSAANQSPHPIII 964 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL--GNP 621 ++ A+ + + D + H++R PL++++ +++ + G L G Sbjct: 965 VLRDITTEIEAENL-------RHDLTYMMIHDLRGPLSSVMTSLDMLAKKMVGDLSEGQD 1017 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + ++ A RS +LD+VN L+DISK+E+G+M + V++D+ V + + NE Sbjct: 1018 KIVKIAL---RSSARLLDMVNLLMDISKLEAGQMPITPITVAVDDVVRSVMQNYEPLLNE 1074 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS----------TTH 731 +++ + + A N P+ D+++++++ N+L NAI F+P+ I IS + H Sbjct: 1075 RKVHVALNIAENTPKASVDIQTLERVVQNLLDNAIKFSPALSTITISANKVQANQLPSDH 1134 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + ++L VRD G G+ E+ + F Q+ +Q +GTGLGL + V+ + G+ Sbjct: 1135 PTGQWILLGVRDAGPGIPAQYRERVFEKFAQV---KQTGIKGTGLGLTYCRLAVETHGGR 1191 Query: 792 FYIFSTPAKGTLIEIIFPL 810 ++ + G L + P+ Sbjct: 1192 IWVANDDGPGALFLLTIPI 1210 >gi|118579770|ref|YP_901020.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118502480|gb|ABK98962.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 944 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 80/255 (31%), Positives = 130/255 (50%), Gaps = 17/255 (6%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSEVIKN 612 DI+E KQ + +L ++ + KS FLA +SHEIRTP+ A++G +++ Sbjct: 322 DITELKQTQFRLEELNTALQQRTEEAEAANAAKSRFLANMSHEIRTPMNAVLGLLHLLQR 381 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE-A 671 +PR +Y + + +L I+ND+LD SKIE+ KM L P E ++ A Sbjct: 382 TEL----SPRQHDYIEKVQMASRSLLGILNDILDFSKIEADKMELETVPFFPQELLNNLA 437 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + L N+K L+ A+ P +L D ++Q+ LN+ NA+ FT G+I+++ Sbjct: 438 VFLSPSLQNKKVELLFDVDADLPPTLLGDALRLQQVLLNLTGNAVKFTEQ-GRIVVTIQV 496 Query: 732 TS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 S V V+DTG+G+ +LE F Q +S R G+GLGL +++ +V Sbjct: 497 VSLTPDQARVRFSVKDTGIGIPADKLESVFTGFVQAESSTTRRFGGSGLGLTISRRLVRL 556 Query: 788 NMGKFYIFSTPAKGT 802 G+ + ST KG+ Sbjct: 557 MGGELEVESTLGKGS 571 >gi|328861455|gb|EGG10558.1| hypothetical protein MELLADRAFT_47091 [Melampsora larici-populina 98AG31] Length = 1140 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 122/237 (51%), Gaps = 15/237 (6%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN---PRYIEYANYI 630 AK+ AE S KS FLA SHEIRTPL AIIG + F LG+ E N + Sbjct: 628 AKEAAEAHSLAKSQFLANTSHEIRTPLNAIIGLT-------FDTLGSNLTREQRENLNLV 680 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + +L I+ND+LDI+KIE+G+M L P SL E + EA++ + A K I + Sbjct: 681 RGQADALLRIINDILDITKIEAGRMALERCPFSLREVIFEALTSLAFGAAAKNIDVFFEI 740 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR----DTG 745 +P +L D + Q+ N++ N+ FT SG + + ++E RV+ DTG Sbjct: 741 HPAVPDLVLGDGSRLGQVIKNLVGNSQKFTKSGSITLTADLVARDDEGRSRVQFHVIDTG 800 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 +G+ +L++ F Q S + GTGLGL +++ +V G+ + S +G+ Sbjct: 801 IGIEKDKLQRIFDSFMQADGSVTRKYGGTGLGLTISRNLVQMMGGQLNVESEVERGS 857 >gi|114565936|ref|YP_753090.1| sensory box histidine kinase/response regulator [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336871|gb|ABI67719.1| Hpt sensor hybrid histidine kinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 497 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 121/230 (52%), Gaps = 6/230 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTP+ I+G +++ + + + I G +L IV+++ Sbjct: 24 KSQFLANMSHEIRTPIIGILGSLDLLDQSDL----SQQQATNISIIRECGEQLLQIVDNI 79 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703 LD+SKIES + + EP +L E + ++ V K + + + + IP +I+ D Sbjct: 80 LDVSKIESDPVTPNLEPCNLGELIIATVNRVDTLLKRKGLDFKLNIDSRIPAKIMLDKTK 139 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQ 762 ++Q+ LN+L N+I FTP G + + + ++ + DTG+G+ + +E+ +PF Q Sbjct: 140 LQQVLLNLLYNSIKFTPQGRVELKAKIQPGDSYRLLFTISDTGIGIPSSFVERVFEPFTQ 199 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 NS + G GLGL + K +++ G+ + S P GT + PL + Sbjct: 200 ADNSNSRQYGGAGLGLYICKKLLELMEGEISLSSMPGVGTTVSFSIPLIE 249 >gi|239906480|ref|YP_002953221.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239796346|dbj|BAH75335.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 863 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 78/253 (30%), Positives = 128/253 (50%), Gaps = 12/253 (4%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q + L AK AE + KS FLA +SHEIRTPL ++G +++ P N E Sbjct: 463 QAEEALQSAKIAAESANKAKSVFLANMSHEIRTPLNGVLGMLQLLDTT--AP--NDEQKE 518 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y +S N + +++D+LDIS+IE+G+M++ ++ L L A K ++ Sbjct: 519 YLLGAVQSTNRLARLLSDILDISRIEAGRMDIVELEFNIQNTWDSIKELFALEARRKGLV 578 Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-------ISTTHTSNEEV 737 + ++P +L D ++QI N++ NA+ FT G I + ++ +S V Sbjct: 579 LEFGCVKDLPLLLIGDEVRLRQILFNLVGNAVKFTEKGKIRIDASLLPLLPSSKSSAIRV 638 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 ++ V DTGVG+ ++ +PF Q S R +G GLGL + + +V+ G I ST Sbjct: 639 LITVHDTGVGIPEEYIKDIFEPFVQADGSYTRRFQGAGLGLSIVRRLVNLLGGDIAIDST 698 Query: 798 PAKGTLIEIIFPL 810 +GT + + PL Sbjct: 699 LGEGTTVYLSLPL 711 >gi|254424944|ref|ZP_05038662.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196192433|gb|EDX87397.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 1492 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 125/240 (52%), Gaps = 8/240 (3%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHEIRTP+ I+G S+++ +R G N R + R+G +L ++ND+ Sbjct: 1115 KSEFLANMSHEIRTPMNLILGTSQLL--ERTGL--NERQQNLLEVLQRNGQTLLTLINDV 1170 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703 LD+SK+E+ ++++ +P L + + A EK + I + +P ++ D Sbjct: 1171 LDLSKLEAQELHIDCKPFDLGTLLKTTFANFAPSAEEKGLSITLEVDSTLPTLVIGDSFR 1230 Query: 704 VKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPF 760 ++QI N+L NA+ FT G Q+ + +V +R V DTGVG+ E +PF Sbjct: 1231 LQQILHNLLGNAVKFTAKGSIQLRSQRIQRAKNKVTVRFSVTDTGVGIHPDAQENLFEPF 1290 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 Q NS + GTGLGL + + +V+ G+ + S P +G+ + PL D + Sbjct: 1291 IQADNSSTRQYGGTGLGLTICRRIVELMRGEIGVESQPNQGSTFWFVVPLEKAGDSEDVL 1350 >gi|160882577|ref|ZP_02063580.1| hypothetical protein BACOVA_00530 [Bacteroides ovatus ATCC 8483] gi|156112021|gb|EDO13766.1| hypothetical protein BACOVA_00530 [Bacteroides ovatus ATCC 8483] Length = 674 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 125/232 (53%), Gaps = 12/232 (5%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K EK+ L AK AE+ + KS FLA +SHEIRTPL +I+GFS+V+ G Sbjct: 432 KSEKD-LRVAKDRAEESNRLKSAFLANMSHEIRTPLNSIVGFSDVLA---MGGSTEDEQQ 487 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL--YANEK 682 Y I + +L+L ++ND+LD+S++E+ ++ L +E + + S+ ++ V +++ Sbjct: 488 SYYKIIKTNSDLLLRLINDILDLSRLEANRVTLTWEECDVVQLCSQVVASVSFSRQSSDN 547 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + L TSF R++ D++ ++Q+ +N+LSNA FT G + + + + I V Sbjct: 548 QFLFSTSFETF--RMVTDVQRMQQVIINLLSNADKFTKRGKITLDFSVNEEKQMAIFSVT 605 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 DTG G+ + + F ++ Q GTGLGL + K +V G +I Sbjct: 606 DTGCGIPKEKQGLVFERFEKLNEYAQ----GTGLGLSICKLIVHKWKGSIWI 653 >gi|144900838|emb|CAM77702.1| PAS [Magnetospirillum gryphiswaldense MSR-1] Length = 806 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 83/248 (33%), Positives = 129/248 (52%), Gaps = 12/248 (4%) Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG- 619 I +Q + L AK+ AE + K+DFLA +SHEIRTP+ ++G ++ PL Sbjct: 219 IERERQTNHNLMQAKEAAEAGARAKADFLAVMSHEIRTPMNGVLGMVRLVLES---PLAE 275 Query: 620 NPR-YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N R +E A + S +L I++D+LD+SK+ESG H P L ++ I+L+ + Sbjct: 276 NDRSRLETACH---SAEGLLTILDDILDLSKLESGSFRFHHAPFQLRPLLAGVIALMDVR 332 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736 A EK + + A +IP L D ++QI N++ NA+ FT +GG I + + Sbjct: 333 AAEKGLTLTVDVAPDIPDWLDGDGGRLRQILFNLIGNAVKFTQAGGVTITACRRDDASDR 392 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V V DTG G+ +L + +PF Q S + GTGLGL + K +V+ G + Sbjct: 393 VGVEFSVIDTGPGIAESQLSRLFQPFSQADASISRQFGGTGLGLVICKRLVEGLGGSIGV 452 Query: 795 FSTPAKGT 802 + P KG+ Sbjct: 453 DTPPGKGS 460 >gi|229514161|ref|ZP_04403622.1| sensor protein TorS [Vibrio cholerae TMA 21] gi|229348141|gb|EEO13099.1| sensor protein TorS [Vibrio cholerae TMA 21] Length = 984 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 79/255 (30%), Positives = 126/255 (49%), Gaps = 10/255 (3%) Query: 561 ISEWKQEKNK--LSHAK--KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 +SE + N+ L+HAK + AE+ S KS FLA +SHEIRTP+ ++G + ++++ Sbjct: 442 LSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLT 501 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 Y I+RSG +L I+ND+LD SKIE+G + +H L V E L+Q Sbjct: 502 STQQ----HYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQ 557 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A EK I + +++ + D + Q+ N++ N I FT G I + Sbjct: 558 SRAREKGITLTYHIDDDVTQYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQ 617 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V D+G+G+ E F Q ++ G GTGLGL +++ +V A G+ + Sbjct: 618 GIRFAVEDSGIGIAEEEQATLFDAFTQADAGRRKLG-GTGLGLAISRKLVQAMGGELQLA 676 Query: 796 STPAKGTLIEIIFPL 810 S +G+ PL Sbjct: 677 SQLGQGSCFWFTLPL 691 >gi|187478274|ref|YP_786298.1| two component sensor kinase for capsular biosynthesis [Bordetella avium 197N] gi|115422860|emb|CAJ49388.1| putative two component sensor kinase for capsular biosynthesis [Bordetella avium 197N] Length = 1142 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 88/313 (28%), Positives = 151/313 (48%), Gaps = 15/313 (4%) Query: 500 FLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558 L +N P+ H L LDLR T++ GS ++ LS+R+ + Sbjct: 437 LLHENQPA--PHDYPGALQLDLRFPTID----GSHRD---LSVRMARARYEGVDVLVAAF 487 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++ KQ + A+ A+ ++ KS FLA +SHEIRTPL AI G E++ + Sbjct: 488 TDVTLEKQMERVSQEARHAADSANAAKSAFLAAMSHEIRTPLNAIHGNLELLSHSAL--- 544 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + + I + + +L IV+D+LD SKIE+G++ L + + + A+ + Sbjct: 545 -DSAQRAHVDTIRSASDSLLSIVSDVLDFSKIEAGELRLEHLEYDIQDIAARALIMFSTT 603 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A K +++ F + + + D V Q+ N+LSNA+ FT +G + T + ++ Sbjct: 604 ARAKGLVLGGEFGLHTTQPMRGDPTRVAQVINNLLSNAVKFTAAGKVTLRMTQDATPPQL 663 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 +L V D+G+GM+ ++ + F Q + R GTGLGL L + A G + S Sbjct: 664 VLTVEDSGIGMSPEQMSMLFQAFTQADITINRRFGGTGLGLALCSRLSQAMGGTLSVTSK 723 Query: 798 PAKGTLIEIIFPL 810 +G+ + PL Sbjct: 724 AGQGSCFTLRLPL 736 >gi|325291777|ref|YP_004277641.1| two component sensor kinase/response regulator hybrid [Agrobacterium sp. H13-3] gi|325059630|gb|ADY63321.1| two component sensor kinase/response regulator hybrid [Agrobacterium sp. H13-3] Length = 743 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 76/252 (30%), Positives = 128/252 (50%), Gaps = 10/252 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++E + + +A+ AEK + K+ LA VSHEIR PL+ ++G + ++ + Sbjct: 211 RDVTEERLALGERENARLRAEKADAEKARLLATVSHEIRLPLSGMLGMNHLLSQTKL--- 267 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N Y + + +SG ++ +V DLLD S +E+G+ L+ +L + + ++ Sbjct: 268 -NEEQRNYLDGMKQSGQSLVQLVEDLLDYSTMEAGRFKLNPRAENLRRLIESIVEMLAHR 326 Query: 679 ANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A+EK I I + ++P L D ++Q+ N+L NA+ FT GG +I E+ Sbjct: 327 AHEKGIEITSFVTPDVPDYLDFDPARLRQVLFNLLGNAVKFTQVGGVVI--RARMVEGEL 384 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + V DTG GM+ E + F Q P SQQ GTGLGL ++ +V G +FS Sbjct: 385 HITVEDTGPGMSQAEQARIFGEFEQAGPMSQQ--SGGTGLGLAISARIVREFGGSLTVFS 442 Query: 797 TPAKGTLIEIIF 808 +G+ ++ F Sbjct: 443 RKGEGSTFKLAF 454 >gi|317154224|ref|YP_004122272.1| ATPase ATP-binding domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316944475|gb|ADU63526.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 881 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 80/281 (28%), Positives = 140/281 (49%), Gaps = 35/281 (12%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSH--------KSDFLARVSHEIRTPLTAIIGFSEVIK 611 D+ + +E+ K+ K + ++++ KS FL+ VSHE+RTPLT+++GFS++I+ Sbjct: 408 DLEDLVRERTKVLVEKAMELRQANRRLMELDELKSAFLSSVSHELRTPLTSLLGFSKIIR 467 Query: 612 N---------------QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 QR G R + I G + ++ND+LD+S+IESG+ + Sbjct: 468 RDFTRTFMHLADTAQAQRLG----ERIQSNLDIIGSEGERLTRLINDVLDLSRIESGQED 523 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEK---RILIRTSFANNIPRILADLRSVKQIALNILS 713 F + L V+ A+S + K R+ IR + +P + AD + Q+ +N+LS Sbjct: 524 WRFTEIDLAGCVNRAVSAASGLLSPKPQVRLTIRR--MDPVPLVHADQDRIHQVLMNLLS 581 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI--RG 771 NA+ FT G++ + +RV DTG G+ LE+ F Q+ + + Sbjct: 582 NAVKFTDF-GEVAVDLYLDDQGMARIRVEDTGRGIKARYLEQIFDKFHQVHRGDTLTEKP 640 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 GTGLGL +++ +V+ G+ + S +GT++ + P D Sbjct: 641 AGTGLGLAISRQIVEHYHGRIWAESKLGRGTVMNVALPPAD 681 >gi|317471316|ref|ZP_07930675.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316901209|gb|EFV23164.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 640 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 122/249 (48%), Gaps = 8/249 (3%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 EKN+ A K AEK + KS+FL+R+SHEIRTP+ IIG + +I Q + + + Sbjct: 113 EKNRAEEAFKHAEKANLAKSEFLSRMSHEIRTPMNGIIGMT-LIAGQNLQ--NSAKISDC 169 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I S +L ++ND+LD+SKIESGK+ + E + ++ A K++ Sbjct: 170 LKKISLSSKHLLALINDVLDMSKIESGKIEIKNEVFDFKVFIESLTTVYYAQAVSKKLNF 229 Query: 687 RTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL----RV 741 T + ++ D + QI N+LSNAI FTP GG + + E+ ++ +V Sbjct: 230 DTILIGEVREELIGDSLRLNQIITNLLSNAIKFTPEGGNVTLRIQELREEDELVWFRFQV 289 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG G+ +EK F Q + + GTGLGL +++ G + S KG Sbjct: 290 EDTGCGVAPENMEKIFNAFEQETSDVAQKYGGTGLGLSISRRFASLMGGSLILNSEVGKG 349 Query: 802 TLIEIIFPL 810 ++ P Sbjct: 350 SVFTADIPF 358 >gi|291569373|dbj|BAI91645.1| two-component sensor histidine kinase [Arthrospira platensis NIES-39] Length = 582 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 77/256 (30%), Positives = 132/256 (51%), Gaps = 16/256 (6%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L A+ A S KS+FLA SHE+RTPL +IGF +++ + G +P Sbjct: 327 QELEEARLEAVALSRLKSEFLANTSHELRTPLNGMIGFLQLVLD---GMADDPEEEREFI 383 Query: 629 YIDRSGNL-VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--RIL 685 + +L+++ND+LDI+KIE+GKM++ V +DE + E ++ +K ++ Sbjct: 384 EEAHQAAIHLLNLINDVLDIAKIEAGKMDIELALVKVDEVLREIEHFIRPQVEQKNLKLT 443 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHTSNEE---- 736 I+T N+ + + + + Q+ LN++ N+I FT GG II N++ Sbjct: 444 IQTEAGNSQIIVYGNYQRILQVMLNLVGNSIKFTHKGGINISLGIIRENVIIQNQQFPGF 503 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V RV DTG+G+ + ++ + F Q+ + + GTGLGL +++ +V A GK +S Sbjct: 504 VEFRVVDTGIGVPIEKQDRLFQAFSQVDSGYTKQYGGTGLGLVISQKLVQAMGGKVKFYS 563 Query: 797 T-PAKGTLIEIIFPLY 811 G+ + PLY Sbjct: 564 LGEGLGSTVTFTIPLY 579 >gi|124515848|gb|EAY57357.1| putative multi-sensor signal transduction histidine kinase [Leptospirillum rubarum] Length = 454 Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 89/369 (24%), Positives = 177/369 (47%), Gaps = 27/369 (7%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 RK + + ++++ +G+ + + +G IL NRA + F VE +R L + Sbjct: 95 RKFKEATSRFSAVMDHMEEGVVVTDLKGKILLVNRAFFRFF--KVEGDVRGESFGLLARK 152 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-RIIIKKLPFSSCYSL--TMHDI 561 T +N + ++L + R +++T T + SL + + + + + D+ Sbjct: 153 TG--INDLIEDVLQ-NHRSVQKEVTFSETTPARTWSLVGTTARGSGETDVFGIFFLLFDL 209 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 ++ +Q L +K DF+A VSHEIRTPLT+I GF+E + + G + +P Sbjct: 210 TDIRQ----LERIRK----------DFVANVSHEIRTPLTSIRGFAEALHD---GGINDP 252 Query: 622 RYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + E++ I + +IV+DLL +S++E+GK + + VSL ++ + +A Sbjct: 253 KTAREFSGIILSHAERLGNIVSDLLHLSELETGKAVMRYGSVSLSRQIAHIRDVYADHAR 312 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 +K I D + + N++ NA+ +TP GG++ + ++ Sbjct: 313 KKGIRFTVQLPEETLTYETDEGKMDLVLGNLVDNALKYTPEGGEVFFGG-WKEGDAIVFE 371 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 VRD+GVG+ E+++ + F ++ ++ GTGLGL + + +++ G + S+P + Sbjct: 372 VRDSGVGIPRTEVDRIFERFYRVDRARSREMGGTGLGLSIVRHILEILQGTVRVTSSPGQ 431 Query: 801 GTLIEIIFP 809 G+ + P Sbjct: 432 GSTFFVRVP 440 >gi|297529553|ref|YP_003670828.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] gi|297252805|gb|ADI26251.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] Length = 597 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 99/361 (27%), Positives = 164/361 (45%), Gaps = 32/361 (8%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 QL SIL + +DG+ NR+G IL TN P E L+ + F + N M Sbjct: 258 QLASILSSMADGVITFNRDGEILITNP--------PAERFLQAWY--FEQGNDAEAMAPL 307 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 ++ L R +EEK S + ++ + + M + + ++ Sbjct: 308 PPQVKELFAR---------VVREEKEQSTEVTLQ----GRTWVILMTPLYGKTMVRGAVA 354 Query: 573 HAKKIAEKESSHK--SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + + E+ K DF+A VSHE+RTP+ + G+SE I + + + Y Sbjct: 355 VLRDMTEERRLDKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAASEEEKKEMAKVIYD 414 Query: 631 D--RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + R G LV NDLLD++++E+G + L +E V L + I A EK+I + Sbjct: 415 ESLRMGRLV----NDLLDLARMEAGHIELEYEQVKLVPYIERVIRKFYGLAKEKQIELTA 470 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 F + I D ++Q+ N++ NAI T SGG + + S + V + V+D+G G+ Sbjct: 471 EFRDRDIEIAFDPDRIEQVLTNLIDNAIRHTESGGTVRL-IIEPSGDGVTIHVQDSGSGI 529 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L + F + ++ GTGLGL +AK +V+A+ G + S +GT Sbjct: 530 PEEDLPFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGLITVHSKLNEGTTFSFYL 589 Query: 809 P 809 P Sbjct: 590 P 590 >gi|296332245|ref|ZP_06874707.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674947|ref|YP_003866619.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150559|gb|EFG91446.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413191|gb|ADM38310.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii str. W23] Length = 589 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 97/361 (26%), Positives = 173/361 (47%), Gaps = 32/361 (8%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 QL +IL + +DG+ IN +G IL TN P E L+ + EQN MN Sbjct: 254 QLSNILSSMADGVITINIDGTILVTNP--------PAERFLQ---AWYYEQN----MNIK 298 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 + L + ++ + ST++E+++ + + + L M + + ++ Sbjct: 299 EGDNLPPEAKELFQNAV--STEKEQMIEMTLQ------GRSWVLLMSPLYAESHVRGAVA 350 Query: 573 HAKKIAEKESSHK--SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + + E+ K DF+A VSHE+RTP++ + G+SE I + + + I Y Sbjct: 351 VLRDMTEERRLDKLREDFIANVSHELRTPISMLQGYSEAIVDDIASSEEDRKEIAQIIYD 410 Query: 631 D--RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + R G LV NDLLD++++ESG LH+E V+++E + + I A EK I + Sbjct: 411 ESLRMGRLV----NDLLDLARMESGHTGLHYEKVNVNEFLEKIIRKFSGVAKEKNITLHQ 466 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + + D ++Q+ N++ NA+ T S G + I+ H+ + + + ++D+G G+ Sbjct: 467 DISLTEEEFMFDEDKMEQVFTNLIDNALRHTSSEGSVSIA-VHSVKDGLKIDIKDSGSGI 525 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L + F + ++ GTGLGL + K +V+A+ G + S KGT Sbjct: 526 PEEDLPFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRMDKGTTFTFYI 585 Query: 809 P 809 P Sbjct: 586 P 586 >gi|320354894|ref|YP_004196233.1| histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320123396|gb|ADW18942.1| histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 717 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 130/244 (53%), Gaps = 10/244 (4%) Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 YS T+ +E +Q+ +L AKK AE + KS+FLA +SHEIRTP+ IIGF++++ + Sbjct: 169 YSETLQ--AEIRQQTAELRAAKKEAEAANIAKSEFLAAMSHEIRTPMNGIIGFTDMLLDT 226 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + E+A I RS + +L ++ND+LD SK+E+GK++L P + + Sbjct: 227 GL----DEEQQEFAQTIKRSASALLSLINDILDFSKVEAGKLDLECIPFDPEITAQDVCD 282 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH 731 LV+ + I + + +P ++ D +Q+ +N++ N+ FT G ++ I+ Sbjct: 283 LVRPKVASRPIEVLCRIDDTLPANVMGDPGRYRQVLVNLMGNSAKFTKKGELELAIAVDD 342 Query: 732 TSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + E + L R+RDTG+G+ +LE + F Q S GTGLGL + + + Sbjct: 343 ETEETITLHARIRDTGIGIPEEKLESIFEAFRQADGSTTREYGGTGLGLSICRKIAALMH 402 Query: 790 GKFY 793 G + Sbjct: 403 GHVW 406 >gi|167746502|ref|ZP_02418629.1| hypothetical protein ANACAC_01212 [Anaerostipes caccae DSM 14662] gi|167653462|gb|EDR97591.1| hypothetical protein ANACAC_01212 [Anaerostipes caccae DSM 14662] Length = 635 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 122/249 (48%), Gaps = 8/249 (3%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 EKN+ A K AEK + KS+FL+R+SHEIRTP+ IIG + +I Q + + + Sbjct: 108 EKNRAEEAFKHAEKANLAKSEFLSRMSHEIRTPMNGIIGMT-LIAGQNLQ--NSAKISDC 164 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I S +L ++ND+LD+SKIESGK+ + E + ++ A K++ Sbjct: 165 LKKISLSSKHLLALINDVLDMSKIESGKIEIKNEVFDFKVFIESLTTVYYAQAVSKKLNF 224 Query: 687 RTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL----RV 741 T + ++ D + QI N+LSNAI FTP GG + + E+ ++ +V Sbjct: 225 DTILIGEVREELIGDSLRLNQIITNLLSNAIKFTPEGGNVTLRIQELREEDELVWFRFQV 284 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG G+ +EK F Q + + GTGLGL +++ G + S KG Sbjct: 285 EDTGCGVAPENMEKIFNAFEQETSDVAQKYGGTGLGLSISRRFASLMGGSLILNSEVGKG 344 Query: 802 TLIEIIFPL 810 ++ P Sbjct: 345 SVFTADIPF 353 >gi|331653654|ref|ZP_08354655.1| signal transduction histidine-protein kinase AtoS [Escherichia coli M718] gi|331048503|gb|EGI20579.1| signal transduction histidine-protein kinase AtoS [Escherichia coli M718] Length = 612 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 92/398 (23%), Positives = 187/398 (46%), Gaps = 34/398 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTN 478 A P +PQ E + +N + + + I+E +DG+ I+R+G + + N Sbjct: 233 AQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMN 292 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEE 536 A + GY +++ +P+++ + NT + + +L L E + L + + Sbjct: 293 PAAEVITGYQRHELVGQPYSMLFD-NT-----QFYSPVLD-TLEHGTEHVALEISFPGRD 345 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + ++ + + D++ K+ + +++ A+++A + +A V Sbjct: 346 RTIELSVTTSRIHNTHGEMIGALVIFSDLTVRKETQRRMAQAERLATL-----GELMAGV 400 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 +HE+R PLTAI G+ ++++ Q + + EY + + + + + ++ LL+ S+ Sbjct: 401 AHEVRNPLTAIRGYVQILRQQTSDLI----HQEYLSVVLKEIDSINKVIQQLLEFSRPRH 456 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + ++ VSL+ V E + LVQ + R+ + N + I AD +KQ+ LNIL Sbjct: 457 SQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELNPINADRELLKQVLLNIL 512 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G+I I T S+ + + + D G G+ +K PF + Sbjct: 513 INAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFF------TTKAS 566 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L++ +++A+ G + S P G +I P+ Sbjct: 567 GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 604 >gi|322700316|gb|EFY92072.1| putative histidine kinase HHK1p [Metarhizium acridum CQMa 102] Length = 2549 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 87/310 (28%), Positives = 152/310 (49%), Gaps = 47/310 (15%) Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA-------EKESS 583 GS + + L++++ ++ S +L+M ++ + E + +K A E ++ Sbjct: 1886 GSFTDRNVTVLQLLVNQIGISYSNALSMKNVEKISAENRGMVSVQKRALAKALEAETKAK 1945 Query: 584 HKSD------------------FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 H FLA VSHE+RTPL +IG SE++++ N +E Sbjct: 1946 HAEAEAKRNVKLAEEAAKAKAIFLANVSHELRTPLNGVIGNSELLRDSDL----NREQLE 2001 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A+ I S +L+L ++ND+LD SK+E+ KM L+ + +E V E + V Y+N + Sbjct: 2002 MADSIRVSADLLLTVINDILDFSKMEADKMKLYIIAFNPEEMVREVVRAVS-YSNRE--- 2057 Query: 686 IRTSFAN-------NIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 +TS N N+P +L D + Q+ N++ N++ FT G I + ++ Sbjct: 2058 -KTSKKNVKIIQDINLPPMLIYGDPIRLHQVLGNLIGNSLKFTEDGSVTIGARLDAETKD 2116 Query: 737 ---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM-GKF 792 + VRDTG+G+ +L K +PF Q S + G+GLGL + K++++ M GK Sbjct: 2117 SATLTFWVRDTGIGIPAQQLAKLFQPFSQADASTARKYGGSGLGLSICKSLIEIMMKGKI 2176 Query: 793 YIFSTPAKGT 802 + S ++GT Sbjct: 2177 QLESEESEGT 2186 >gi|298528361|ref|ZP_07015765.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298512013|gb|EFI35915.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1175 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 70/274 (25%), Positives = 136/274 (49%), Gaps = 35/274 (12%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E + + L AK+ AE+ + KSDFLA +SHEIRTP+ +IG + ++ + Sbjct: 376 DVTELVKARQDLIQAKEHAEEATRAKSDFLANMSHEIRTPMNGVIGMTGLLLDTDL---- 431 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + YA + S +L ++ND+LD SKIE+G++++ L+ + + ++ + A Sbjct: 432 DSEQQHYARTVRSSAESLLTVINDILDFSKIEAGRLDIETVDFDLEAMLRDFSGMMAVKA 491 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG--------GQIIISTT 730 EK + + S N+P ++ D ++QI +N++ NA+ FT G +++ + Sbjct: 492 EEKGLELICSMDPNVPSMVRGDSGRLRQILMNLVGNAVKFTEHGEVEIRVSKSEVVDQRS 551 Query: 731 HTSNE----------------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 S++ E+ ++RDTG+G+ + + + F Q+ S Sbjct: 552 EVSDQPANRLSHEQTGIKDQYGDSRIVELCFQIRDTGIGIPQDKQDSLFESFSQVDASTT 611 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 + GTGLGL +++ + + G + S +G+ Sbjct: 612 RKFGGTGLGLAISRQLAEMMGGTAGLESVEDQGS 645 >gi|149199753|ref|ZP_01876784.1| transcriptional regulator [Lentisphaera araneosa HTCC2155] gi|149137158|gb|EDM25580.1| transcriptional regulator [Lentisphaera araneosa HTCC2155] Length = 630 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 116/223 (52%), Gaps = 9/223 (4%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+F A +SHEIRTPL IIG +++ N R E N I S +L++VN++ Sbjct: 136 KSEFSATMSHEIRTPLNGIIGILNILQETNL----NKRQAELVNIISHSSEALLNLVNNI 191 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI--LADLR 702 LD +K+E ++ L EP SL + I L + ++ + + N + ++ + D Sbjct: 192 LDFAKLEGKQLTLRPEPFSLFSLCLQVIDLAKTSCDKDDLELFLDAPNELKKLFLMGDKN 251 Query: 703 SVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759 ++QI N++SNA+ FT G ++ + + ++ + + DTG+G++ E E Sbjct: 252 RLRQIISNLVSNAVKFTDKGYIKLKLELIERNDKQAKITISIADTGIGISKEENELIFSK 311 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 F Q+ NS + EGTGLG+P+++ ++ + S P G+ Sbjct: 312 FTQVDNSHSRKNEGTGLGIPISEMILQCMNSNLELNSQPGAGS 354 >gi|254235813|ref|ZP_04929136.1| hypothetical protein PACG_01754 [Pseudomonas aeruginosa C3719] gi|126167744|gb|EAZ53255.1| hypothetical protein PACG_01754 [Pseudomonas aeruginosa C3719] Length = 786 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 131/251 (52%), Gaps = 12/251 (4%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L A++ A + ++ FLA +SHEIRTPL ++G + + GPL P + + Sbjct: 290 QELEEARQTALDMAQARASFLANMSHEIRTPLNGLLGMLSLSLD---GPL-TPEQRQQLS 345 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN---EKRIL 685 SG ++++++ND+LD+SK E+G++ L P L V + SL+ A E L Sbjct: 346 IAHDSGKVLVELLNDVLDLSKFEAGQLVLEQIPFDLGVLVEDTASLLSQNAAAGVELTCL 405 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + + + D ++Q+ N+LSNA+ FT G++ + T+ E V + VRDTG Sbjct: 406 VDPALPAQVS---GDPTRIRQVVSNLLSNALKFT-RLGRVDVRVEATA-EGVRISVRDTG 460 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ L++ +PF Q S + GTGLGL L + + +A G+ + ST G+L Sbjct: 461 IGIAQEALDRIFQPFTQADASITRQYGGTGLGLALTRKLCEAMQGELTVESTVGLGSLFS 520 Query: 806 IIFPLYDTSHP 816 + PL S P Sbjct: 521 VGLPLAPVSPP 531 >gi|83646938|ref|YP_435373.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83634981|gb|ABC30948.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 874 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 100/370 (27%), Positives = 170/370 (45%), Gaps = 33/370 (8%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI----LRKPFTVFLEQNTPSVMNH 511 +IL +DGI ++ G I S NRA ++F Y + + L++ F + + + M+ Sbjct: 515 AILNNINDGIITVDEIGFIASFNRAAERIFHYNADSVIGYNLKRLFANYSDNDASESMSD 574 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 YL+ L D S +E+++ +R ++ P S +H + E+ + Sbjct: 575 YLSASLRSD----------ASGEEQEIEGVRQNGERFPVGISVS-EVHR----RAERLFI 619 Query: 572 SHAKKIAEKE--SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP-----RYI 624 + I E++ K++F++ VSHE+RTPLT+I G ++ N G +G P R++ Sbjct: 620 VVVRDITERKRVDRMKNEFISTVSHELRTPLTSITGALSLLLN---GAVGQPTEEFSRFL 676 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + A S L L ++NDLLD+ KI +G + F + V ++I ++Y + + Sbjct: 677 QIA--YKNSQRLAL-LINDLLDMEKITAGGVKYSFSVEPVMPLVEQSIDTNRVYGQQHEV 733 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + + I D +QI N LSNA F+P G + IS N V + V D Sbjct: 734 EYKIIHREDASLINVDPLRFQQILANFLSNAAKFSPQGCTVDISVQRREN-YVRISVTDR 792 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G G+ + K F Q +S + + GTGLGL +++ + G+ S KG Sbjct: 793 GPGIPPEFYTRIFKKFSQADSSDRRQKGGTGLGLFISRELAKGMRGRIDFESEVGKGATF 852 Query: 805 EIIFPLYDTS 814 + PL S Sbjct: 853 YVELPLASGS 862 >gi|330792802|ref|XP_003284476.1| hypothetical protein DICPUDRAFT_148245 [Dictyostelium purpureum] gi|325085619|gb|EGC39023.1| hypothetical protein DICPUDRAFT_148245 [Dictyostelium purpureum] Length = 1555 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 82/236 (34%), Positives = 129/236 (54%), Gaps = 24/236 (10%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGF------SEVIKNQRFGPLGNPRYIEYANYID 631 AE+ + K FL VSHE+RTP++ I+ S V NQR EY +I Sbjct: 666 AEEINDAKIRFLTTVSHEVRTPISGILSSVGILDESLVDSNQR----------EYLGFIK 715 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 S + +LD++ D+LD SKIE+GKM L +L + + ++I++V A+++ I + Sbjct: 716 DSADYLLDLITDILDFSKIEAGKMELERVEFNLLKMLEDSINIVYRNAHDRGINVIHFVE 775 Query: 692 NNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII--ISTTHTSNE--EVILRVRDTGV 746 ++P L D +KQ+ LN LSNAI FT S GQ++ +S +NE +V+ V D+GV Sbjct: 776 PDVPIFLIGDSHRIKQVLLNYLSNAIKFT-SKGQVMVKVSLVEKTNEGIKVMFSVEDSGV 834 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+ + E+ +PF Q+ + +Q GTGLGL ++K + G+ ST G+ Sbjct: 835 GIKDEFQEQLFQPFHQVGSLRQYL--GTGLGLSISKRLTAMMGGEVGFRSTFGVGS 888 >gi|311694984|gb|ADP97857.1| signal transduction histidine kinase [marine bacterium HP15] Length = 775 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 85/257 (33%), Positives = 129/257 (50%), Gaps = 10/257 (3%) Query: 566 QEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 Q N+ L AK+ A + + +++FLA +SHEIRTPL ++G + R I Sbjct: 272 QRGNRALVKAKEDAVRRARARANFLASMSHEIRTPLNGVLGMLGLALEGELDSAQRNR-I 330 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E A +G +L ++ND+LDISK+E+GK++L P S+ + E +L A KRI Sbjct: 331 EIAL---NAGESLLGLLNDILDISKVEAGKLSLENIPFSVRHLIEECATLHAQQARRKRI 387 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + T ++P L D V+Q+ N+LSNAI FT G + S + + V D Sbjct: 388 HLVTEIDPDLPEDFLGDPTRVRQVLNNLLSNAIKFTDEGS--VKLKAAYSGGSLRIDVVD 445 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+GM+ L + PF Q GTGLGL L + +V+ G+ + S GT Sbjct: 446 TGIGMSTEGLHRIFSPFSQADAETTRLYGGTGLGLTLCRQLVERMHGQILVDSREGSGTH 505 Query: 804 IEIIFPL--YDTSHPHD 818 + PL ++ S +D Sbjct: 506 FTVTLPLPVHEASEDYD 522 >gi|298482966|ref|ZP_07001148.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298270938|gb|EFI12517.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 660 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 82/256 (32%), Positives = 133/256 (51%), Gaps = 14/256 (5%) Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + D++E + +L A+ AE+ KS FLA +SHEIRTPL AI+GFS+++ Sbjct: 265 IRVDDVTERQHMIGELETARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMVTE- 323 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE-AISL 674 E+ I+ + L+L ++ND+LD+SKIE+G + L +E L +E A S+ Sbjct: 324 ---DQEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVELKYEDFDLAVYFNELAASM 380 Query: 675 VQLYAN-EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + N + R++ + R+ D + QI N ++NAI +T G I Sbjct: 381 HRRVVNPQVRLVPVNPYETCTVRL--DKNRLAQILTNFVTNAIKYTSKG--TIEMGYEKI 436 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + ++ L VRDTG+G+ + +K F ++ Q GTGLGL + KA+V+A G+ Sbjct: 437 DGDIRLYVRDTGIGIPEDKKDKVFHRFEKLDEFAQ----GTGLGLSICKAIVEACRGEIG 492 Query: 794 IFSTPAKGTLIEIIFP 809 S KG+L + P Sbjct: 493 FESEFDKGSLFWAVLP 508 >gi|255527099|ref|ZP_05393987.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans P7] gi|296187887|ref|ZP_06856280.1| PAS domain S-box domain-containing protein [Clostridium carboxidivorans P7] gi|255509201|gb|EET85553.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans P7] gi|296047508|gb|EFG86949.1| PAS domain S-box domain-containing protein [Clostridium carboxidivorans P7] Length = 924 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 104/374 (27%), Positives = 172/374 (45%), Gaps = 47/374 (12%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L I E+ D I I+ G I +V ++ GY ++D++ K + Sbjct: 146 LREITESMKDLICKIDINGKIQYIGPSVKQILGYNLKDLIGK---------------YIF 190 Query: 514 TEILSLDLRQTLEKITLG-----STKEEKLLSLRI-------IIKKLPFSSCYS------ 555 + I DL +T+ G ST +E LR+ I K ++ Y Sbjct: 191 SNIHPEDLDKTMSSFNRGFIDKSSTGQE----LRVRKQDGHYIWVKFTYNPLYDENGNVS 246 Query: 556 ---LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 + DI++ K+ + +L K E KS+FLA VS+EI+ PL +II ++V+ Sbjct: 247 GAIIVAKDITKIKELEEELKKFKLEVESAKLAKSEFLANVSNEIKNPLNSIIDMTDVM-- 304 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 F N EY + I +S +L V+++L SKIESGK+ L ++ + + E + Sbjct: 305 -LFNTSLNEEQNEYMSIIKKSSESLLKTVDNMLGFSKIESGKVRLEEFEFNIKDIIYETL 363 Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + + A+EK + + ++ ++ D +KQI +NI+ NAI FT G + Sbjct: 364 DALAIRAHEKNLELMIYIHPDLDENLIGDYFKLKQIIINIVGNAIKFTEKGEVAVYVEKV 423 Query: 732 TSNEEVI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 T + I + V DTG+GMT + K K F + N + + G GLGL L+K +++ Sbjct: 424 TDKLDKISLKISVIDTGIGMTEENINKLNKYFNGVGNCKLKKYAGNGLGLILSKQLIELM 483 Query: 789 MGKFYIFSTPAKGT 802 G+ + S KGT Sbjct: 484 DGEIWFESKYKKGT 497 >gi|171059849|ref|YP_001792198.1| GAF sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170777294|gb|ACB35433.1| GAF sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 1087 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 116/229 (50%), Gaps = 11/229 (4%) Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E + K+ FLA +SHEIRTP+ AIIG + ++ L R +D + +L Sbjct: 563 EVANQSKTAFLANMSHEIRTPMNAIIGLTHLMARDSRDALQRDRL----RKVDGAARHLL 618 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 I+ND+LD+SKIE+GKM L S DE +S A+ +V A+ K + + N R+ Sbjct: 619 QIINDILDLSKIEAGKMGLDDIEFSRDELLSGALEMVGEVADAKGLELALDAGNLPERMR 678 Query: 699 ADLRSVKQIALNILSNAIHFTPSG-----GQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 D + + Q +N+L+NA+ FT G G+++ +V VRD+G+G++ + Sbjct: 679 GDPKRLAQALINLLANAVKFTEHGWVRLRGELL--ADQGGRLQVRFEVRDSGIGISPEQQ 736 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 F Q S R GTGLGL L + + G+ + S P +G+ Sbjct: 737 GVLFNAFAQADASTTRRHGGTGLGLALTRHIAAMMEGEVGLVSQPGEGS 785 >gi|86137798|ref|ZP_01056374.1| PAS [Roseobacter sp. MED193] gi|85825390|gb|EAQ45589.1| PAS [Roseobacter sp. MED193] Length = 599 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 74/248 (29%), Positives = 129/248 (52%), Gaps = 8/248 (3%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H + Q ++L A AE S KS FLA +SHEIRTPL AI G +E++ + P Sbjct: 175 HSMWSLNQMTDRLRDALSAAEAGSRAKSRFLASMSHEIRTPLNAICGMAELMDEEDADP- 233 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 R E + + +S + I+ND+LD +K+ESG + ++ P + ++ A+ + + Sbjct: 234 -ETRR-ERSQLLQQSAQALTGILNDILDHAKVESGHIEVNLAPATPRAEITSAVEMFRAP 291 Query: 679 ANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736 A +K +L SF +++P D + ++Q+ N++SNA+ FT S GQ+ I + +E+ Sbjct: 292 AEQKGLLFDLSFDDSVPSYAQFDAQRLRQVIGNLVSNAVKFTES-GQVKIHVSAQPDEDL 350 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + ++V DTG G+ ++ F ++ + GTGLGL +A+ G + Sbjct: 351 TTLTIQVSDTGRGIAAEQVPHLFTEFYRVEDKNAPTVPGTGLGLAIARRFAKMMGGDITV 410 Query: 795 FSTPAKGT 802 + P G+ Sbjct: 411 STIPMLGS 418 >gi|189347233|ref|YP_001943762.1| multi-sensor signal transduction histidine kinase [Chlorobium limicola DSM 245] gi|189341380|gb|ACD90783.1| multi-sensor signal transduction histidine kinase [Chlorobium limicola DSM 245] Length = 608 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 119/229 (51%), Gaps = 4/229 (1%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +A VSH++RTPLTA+ ++ + G L + + S LV I++DL Sbjct: 384 KRSVIATVSHQLRTPLTALRMSIHLLLEEHTGHLNGQQADLLLAAREESERLV-HILDDL 442 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LDI++IESGK +L +S +E + L ++ + IR + +P I+AD S+ Sbjct: 443 LDINRIESGKAHLDLSALSPCRIGAEGMEPFLLPCRDQGVSIRNTIPETLPDIVADRESL 502 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 + N+LSNA+ FT +GG I ++ + + + DTG G+ +E +PF ++P Sbjct: 503 MHVFANLLSNALRFTSAGGSITLNACE-DDGNIRFSIEDTGTGIDAEHMEHLFEPFYRVP 561 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 ++ G GLGL + K +V+A+ G STP KG+ P+ +T Sbjct: 562 GQRE--KNGIGLGLSIVKEIVEAHGGSVDAESTPGKGSRFSFNLPIRNT 608 >gi|117926678|ref|YP_867295.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610434|gb|ABK45889.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 957 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 118/233 (50%), Gaps = 5/233 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHEIRTP+ +IG +E++ PL + Y + SG +LD++N + Sbjct: 586 KSEFLAAMSHEIRTPMNTVIGMTELLLET---PLSEEQQ-RYVRSLRSSGTALLDVINAI 641 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703 LD+++IESG++ L E L E + E ++ A +K++ + N P ++ D Sbjct: 642 LDLTRIESGRLELTEERYDLHELMRETCEVMGYAAAKKKLEMVLEMNPNTPNYLVGDAPR 701 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 ++QI +N++ NAI FT G + + E + + V D+G+G+ + F Q Sbjct: 702 LRQILINLVGNAIKFTEVGQVCVRVWLDEAVERLRIEVEDSGIGIPKEHINTIFDMFAQA 761 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 +S R G+GLGL +++ + G+ + S KG+ + P P Sbjct: 762 DSSMARRFGGSGLGLTISQRLAQLMGGRLAVQSQVQKGSCFTLSMPCQIGEEP 814 >gi|254418414|ref|ZP_05032138.1| PAS fold family [Brevundimonas sp. BAL3] gi|196184591|gb|EDX79567.1| PAS fold family [Brevundimonas sp. BAL3] Length = 647 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 115/226 (50%), Gaps = 6/226 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTP+ I+G ++ ++ L R + + SG +L I+ND+ Sbjct: 270 KSQFLAVMSHEIRTPMNGILGMTQAMQADPLPALQRERL----DIVAESGAALLTILNDI 325 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+SK+E+GKM L L + S A+++ +++ + D + Sbjct: 326 LDLSKVEAGKMELESVAFDLGILLGNLRSTYASTADDQGLILALDLGDAAGLYRGDPTRL 385 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +QI N++SN++ FT G +I I+ + ++L V DTGVGMT + + PF Q Sbjct: 386 RQILSNLISNSLKFTARG-RIDIAARR-DGQTLVLTVADTGVGMTTEVIARIFNPFAQAD 443 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 S + GTGLGL + + G+ + S P +G+ ++ PL Sbjct: 444 ASTTRQFGGTGLGLSIVHELTRLMQGRIDVDSRPGEGSRFTVVLPL 489 >gi|221065883|ref|ZP_03541988.1| histidine kinase [Comamonas testosteroni KF-1] gi|220710906|gb|EED66274.1| histidine kinase [Comamonas testosteroni KF-1] Length = 936 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 82/279 (29%), Positives = 140/279 (50%), Gaps = 16/279 (5%) Query: 549 PFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 P + C T++D+++ KQ + L +A + AE + K+ FL +SHEIRTPL I+ Sbjct: 420 PMTYCGGPAVLCTINDVTKLKQTELSLLNAMQAAEAANQAKTLFLTTMSHEIRTPLYGIL 479 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G E++ + +Y + + S ++L +ND LD+S+IE+G M L P++L Sbjct: 480 GTLELLSLTG----ATEQQQQYLDTLRHSSTVLLSTLNDTLDLSRIEAGYMTLERRPLAL 535 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG 723 E + +S + A K + + + + N P +L D+ ++QI N++SNAI FT S G Sbjct: 536 LEVLDNVVSTFCVRAERKNLRLYCTASVNTPLLVLGDVTRLRQILDNLVSNAIKFTVS-G 594 Query: 724 QIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 I++ T S+ ++ V DTG+G+ L + P+ + + +GTGLGL Sbjct: 595 HIVLRLRSTPVEKSHVQLEFEVADTGIGIAAEHLPQLFDPYFRTDSDIDQLIQGTGLGLS 654 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLI--EIIFPLYDTSHP 816 + + G+ S GT I ++ P+ S P Sbjct: 655 ICSRLSQMMGGELAATSELGIGTRISFKVTLPIAAESIP 693 >gi|116328265|ref|YP_797985.1| sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121009|gb|ABJ79052.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 839 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 120/236 (50%), Gaps = 7/236 (2%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSE-VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS F A VSHE+RTPLT IIG + ++K+Q+ + ++R+ +L VND Sbjct: 209 KSQFFANVSHELRTPLTLIIGPTRTLLKDQKISAAQRT----FLETMERNSYTLLKHVND 264 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 LLD+SK+E+GKM L + +L + + + + A+E+ I N P I D+ Sbjct: 265 LLDLSKLEAGKMTLRYSNANLSDMIQDIAAHFNSVADERNIDFVLDLPKNFP-IQIDVPK 323 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 +++I LN++SNA F P G+ I T + + V D G G+ + ++ + F Q Sbjct: 324 MERIILNLISNAFKFVPDSGK-IHCTLKMESATAYIYVADNGPGVPVHLRDQIFEKFRQG 382 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 GTGLGL +A+ V+ ++G +F + G L ++ P+Y H + Sbjct: 383 EEGDSRSFGGTGLGLAIAREFVNLHLGSIGVFDSFLGGALFKVQIPIYAPVHVEEI 438 Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 63/261 (24%), Positives = 120/261 (45%), Gaps = 26/261 (9%) Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 S+ +H+ + K+ L + + E F VSH++R P+ I GF +++ + Sbjct: 584 SIKVHNFAVLKKTIEALENVNRDME-------SFSYSVSHDLRAPILGIEGFLQIVL-ED 635 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 F + + + ++ + +++ DLL+ KI K++L+ V ++ V E I+ Sbjct: 636 FSEKMDSEALRLLKTVQKNVIYMNNLIQDLLNFHKI--SKIDLNIRIVDMNRMVEEVIAA 693 Query: 675 V-QLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 V Q Y + SF N +P LA+ ++KQ+ +N++SNA+ ++ + +I Sbjct: 694 VLQNYPKKS-----YSFQLNELPNALANGSALKQVWMNLISNAVKYSSTKEHPMIKIGF- 747 Query: 733 SNEEV----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 EEV + V D GVG + K F ++ ++ EGTG+GL + +V + Sbjct: 748 --EEVDGSNVYFVEDNGVGFNKIYSNRLFKVFQRLHTQEEF--EGTGVGLAIVARIVQRH 803 Query: 789 MGKFYIFSTPAKGTLIEIIFP 809 G+ + KG+ P Sbjct: 804 GGQVFAEGEVNKGSKFSFTLP 824 >gi|86608001|ref|YP_476763.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556543|gb|ABD01500.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 1526 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 116/229 (50%), Gaps = 8/229 (3%) Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 S FLA +SHEIRTP+ A++G + ++ PL N ++ I SG+ +L ++ND+L Sbjct: 850 SSFLATMSHEIRTPMNAVLGMTGLLLET---PL-NAEQRDFVETIRISGDALLTLINDIL 905 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSV 704 D SK+E+G+M L L + E L A+ K + + +PR L D + Sbjct: 906 DFSKLEAGEMELEILDFDLRSCLEEVADLFAPTAHAKGLELAVLMPPEVPRYLRGDASRL 965 Query: 705 KQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 +QI N++SNAI FT G +I + ++ + L VRDTG+G+ K +PF Sbjct: 966 RQILNNLVSNAIKFTHQGEVVIQAEVLQETATHAHLKLSVRDTGIGIPAAAQSKLFQPFS 1025 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 Q+ S + GTGLGL + K + + G + S +G+ + L Sbjct: 1026 QVDASTTRKYGGTGLGLAICKQLTELMGGTISLQSQEGQGSTFSVELTL 1074 >gi|29346064|ref|NP_809567.1| two-component sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29337958|gb|AAO75761.1| two-component sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 660 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 119/226 (52%), Gaps = 11/226 (4%) Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L HAK+ AE+ + KS F++ +SHEIRTPL AI+GFS ++ + EYA+ I Sbjct: 420 LRHAKERAEEANQLKSAFVSNMSHEIRTPLNAIVGFSSLLIDT---VETTDEQKEYADII 476 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR-ILIRTS 689 + L+L +++D+LD+S++ESGK+ +E L I+L + N R I +R Sbjct: 477 QTNSELLLQLISDVLDVSRLESGKLLFKYEWCELVNHCQNMITLTR--KNRTRDIDVRLQ 534 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL-RVRDTGVGM 748 + D ++Q+ +N+L+NA+ FTP GG I + ++ +L V DTG G+ Sbjct: 535 MPKEPYMLYTDPLRLQQVIINLLNNALKFTPDGGSITLDYEIDEEDQCMLFSVTDTGAGI 594 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + E + F ++ Q GTGLGL + K + G +I Sbjct: 595 PEDKQELVFQRFEKLNEFVQ----GTGLGLAICKLTIQRMGGDIWI 636 >gi|37519624|ref|NP_923001.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35210615|dbj|BAC87996.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 644 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 97/369 (26%), Positives = 186/369 (50%), Gaps = 35/369 (9%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-------VEDILRK 495 N ++ E +L + + +DG +++ IL N A+ ++FG+ + D+L Sbjct: 278 NIEEITAEKAKLETFIATIADGGILLDSSLRILLVNPAMLRIFGWGSRVVGKNILDLLPV 337 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 +E+ SV + L + + R L+K TL L+S + + Sbjct: 338 GMRAEVEEPLDSVSRNILEQA---ECRVVLDKRTL-----RVLISPVLAPRGDNLLKGVV 389 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 LT+ D+S+ + +L+ AK S F++ VSHE+RTPL++I + E + F Sbjct: 390 LTVQDLSK----EAELNQAK----------SQFISNVSHELRTPLSSIKSYIETVYE--F 433 Query: 616 G-PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 G L + E+ ++ + + +VND+LD+S++ESG+ HFEPV L + + + + Sbjct: 434 GDSLDDSTKNEFLKTANQETDRLTRLVNDVLDLSRLESGR-EYHFEPVDLVQPIEQTLRT 492 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 +L A ++ I + + A ++P +L + ++Q+ N++ NA+ FT GG++ +S T + Sbjct: 493 HRLTARDREIELVSDIATDLPLVLGNYDLLQQVFSNLVGNALKFTEPGGRVTLSARRTDD 552 Query: 735 -EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +V + V DTG+G++ + + + F ++ N EGTGLGL + +V + + + Sbjct: 553 PAKVRVAVTDTGIGISEEDQRRIFERFFRVENRVHTL-EGTGLGLSIVDNIVKKHNAQVH 611 Query: 794 IFSTPAKGT 802 I S +G+ Sbjct: 612 IESEVGQGS 620 >gi|302038577|ref|YP_003798899.1| putative histidine kinase [Candidatus Nitrospira defluvii] gi|300606641|emb|CBK42974.1| putative Histidine kinase [Candidatus Nitrospira defluvii] Length = 1058 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 99/382 (25%), Positives = 178/382 (46%), Gaps = 21/382 (5%) Query: 436 EDVDTRINKRKMEIEVMQ--LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 ++++ ++ +R EIE + L ++LE +D I ++ E N V +GY ED+L Sbjct: 690 QELEAKVGERTREIEETKQYLENLLENANDVIYTLDSEQCFTYVNSKVLA-WGYAKEDLL 748 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 +P+ L + L L + ++Q E L + E + S+ + + L Sbjct: 749 GRPYLGLLSKRH---RGRRLKSTLDIGVKQVYEVEVLTKSGEPR--SVMVSVSPLHGVEG 803 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 L + I+ E KL + +EK +S A V+HEI PL I+ + N Sbjct: 804 EILGVLGIARDMTETKKLEQQIRNSEKLAS-VGKLAAGVAHEINNPLGGIL---NCLYNM 859 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 R G L R EY ++ V IV LLD S+ + ++ L +++ V+ + Sbjct: 860 RKGTLSPSRQEEYLASMEDGLRRVQRIVRQLLDFSQQHNPELAL----ADINQVVNRVLL 915 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 L R+ + T+ + +IP ++ D ++Q+ +N++ NAI +GG + I T+ Sbjct: 916 LTDHLFVPHRVQLETALSPDIPELMIDRHMMEQVLMNLVLNAIQAMRTGGVLTIRTS-MD 974 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++R++D+G G+++ L + PF N GEGTGLGL ++ +V+ + G+ + Sbjct: 975 EAHCLVRIQDSGCGISSSVLPRIFDPFFTTKNE----GEGTGLGLSVSLGIVERHGGRIF 1030 Query: 794 IFSTPAKGTLIEIIFPLYDTSH 815 + S KGT + PL H Sbjct: 1031 VESEVGKGTTFTVSIPLATERH 1052 >gi|284052778|ref|ZP_06382988.1| GAF sensor signal transduction histidine kinase [Arthrospira platensis str. Paraca] Length = 582 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 77/256 (30%), Positives = 132/256 (51%), Gaps = 16/256 (6%) Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L A+ A S KS+FLA SHE+RTPL +IGF +++ + G +P Sbjct: 327 QELEEARLEAVALSRLKSEFLANTSHELRTPLNGMIGFLQLVLD---GMADDPEEEREFI 383 Query: 629 YIDRSGNL-VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--RIL 685 + +L+++ND+LDI+KIE+GKM++ V +DE + E ++ +K ++ Sbjct: 384 EEAHQAAIHLLNLINDVLDIAKIEAGKMDIELALVKVDEVLREIEHFIRPQVEQKNLKLT 443 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHTSNEE---- 736 I+T N+ + + + + Q+ LN++ N+I FT GG II N++ Sbjct: 444 IQTEAGNSQIIVYGNYQRILQVMLNLVGNSIKFTHKGGINISLGIIRENVIIQNQQFPGF 503 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V RV DTG+G+ + ++ + F Q+ + + GTGLGL +++ +V A GK +S Sbjct: 504 VEFRVVDTGIGVPIEKQDRLFQAFSQVDSGYTKQYGGTGLGLVISQKLVQAMGGKVKFYS 563 Query: 797 T-PAKGTLIEIIFPLY 811 G+ + PLY Sbjct: 564 LGEGLGSTVTFTIPLY 579 >gi|269964118|ref|ZP_06178418.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831143|gb|EEZ85302.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 1229 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 81/267 (30%), Positives = 139/267 (52%), Gaps = 10/267 (3%) Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DI+E K+ + L A++ A+ + +FLA +SHE+RTPL+A G +++ Q Sbjct: 653 VLQDITEQKEREFALIDAQEKAQTAVRARENFLATMSHELRTPLSAAHGLLDLLTRQT-- 710 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 E RS N + +V+++LD SK+E+G++ + +L +S+ + + Sbjct: 711 --NRESSKELITQAMRSLNHLNLLVDEVLDYSKLEAGQLKVTPTKTNLVTTLSDVVRSFE 768 Query: 677 LYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A K + R +F + P + D + QIA N+LSNA+ FT G IS + NE Sbjct: 769 PKAVSKGLDYRVTFKPFVNPWLKVDAVRLVQIATNLLSNAVKFTTDGE---ISVSVAMNE 825 Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 ++IL++ DTG+GMT +L+ ++PF Q ++ + GTGLGL + +V+ G I Sbjct: 826 GQLILKIADTGIGMTETQLDGILQPFVQADDTITRKYGGTGLGLSIVDRLVECMGGDLCI 885 Query: 795 FSTPAKGTLIEIIFP-LYDTSHPHDCI 820 S GT + + P ++ + P I Sbjct: 886 DSQFGLGTTMVVKLPVIFCEAEPQAAI 912 >gi|254285731|ref|ZP_04960694.1| sensor protein TorS [Vibrio cholerae AM-19226] gi|150424228|gb|EDN16166.1| sensor protein TorS [Vibrio cholerae AM-19226] Length = 984 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 79/255 (30%), Positives = 125/255 (49%), Gaps = 10/255 (3%) Query: 561 ISEWKQEKNK--LSHAK--KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 +SE + N+ L+HAK + AE+ S KS FLA +SHEIRTP+ ++G + ++++ Sbjct: 442 LSEMNHKLNQEVLNHAKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLT 501 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 Y I+RSG +L I+ND+LD SKIE+G + +H L V E L+Q Sbjct: 502 ATQQ----HYVQVINRSGRSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQ 557 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A EK I + ++ + D + Q+ N++ N I FT G I + Sbjct: 558 SRAREKAITLTYHIDEDVTQYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQ 617 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V D+G+G+ E F Q ++ G GTGLGL +++ +V A G+ + Sbjct: 618 GIRFAVEDSGIGIAEEEQATLFDAFTQADAGRRKLG-GTGLGLAISRKLVQAMGGELQLA 676 Query: 796 STPAKGTLIEIIFPL 810 S +G+ PL Sbjct: 677 SQLGQGSCFGFTLPL 691 >gi|310824799|ref|YP_003957157.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca DW4/3-1] gi|309397871|gb|ADO75330.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca DW4/3-1] Length = 2142 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 81/266 (30%), Positives = 134/266 (50%), Gaps = 16/266 (6%) Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 H E +Q K L + S +KS+FLA +SHE+RTPL +++ S+ + G L Sbjct: 1421 HKNLEVEQAKRALEEKAEQLSLTSKYKSEFLANMSHELRTPLNSLLILSQTLSENTDGNL 1480 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 R +E+A I SG+ +L+++ND+LD+SKIESG M + P+ + + Sbjct: 1481 -TGRQVEFARTIHASGSDLLELINDILDLSKIESGTMTVDVGPLRFGDLREFVERTFRQV 1539 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----S 733 A++K + S +P + D + ++Q+ N+LSNA FT S GQ+ +S S Sbjct: 1540 ADKKSLQFDISLEGALPGEVQTDAKRLQQVLKNLLSNAFKFTES-GQVTLSIQRARAGWS 1598 Query: 734 NEEVILR---------VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 ++ ILR VRDTG+G+ + + + F Q S + GTGLGL +++ + Sbjct: 1599 SDHPILRTAPTVVAFVVRDTGIGIPKDKHQIIFEAFQQADGSTARKYGGTGLGLSISREI 1658 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810 G+ + S +G+ + PL Sbjct: 1659 ARLLGGEIRLESEVGRGSTFTLFLPL 1684 >gi|302036227|ref|YP_003796549.1| putative phosphate regulon sensor histidine kinase PhoR [Candidatus Nitrospira defluvii] gi|300604291|emb|CBK40623.1| putative Phosphate regulon sensor histidine kinase PhoR [Candidatus Nitrospira defluvii] Length = 619 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 93/370 (25%), Positives = 175/370 (47%), Gaps = 29/370 (7%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 QL ++L A +G+ +++ G ++ N A+ ++F + + + + + + Sbjct: 260 QLLAMLIAMVEGVMVLDYRGTVVQVNPALERMFSLELTESRGRHYAELIRHEG---LTAL 316 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 ++ +L Q E ITL + + I +C HDI+E L Sbjct: 317 VSSVLQTRSGQGGE-ITLSPSGRCLRVEASIAGGSREQEACAVFVFHDITE-------LR 368 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE-VIKNQRFGPLGNPRYIEYANYID 631 +KI + DF+A VSHE+RTPLT+I G+ E ++ + P ++E Sbjct: 369 RLEKI-------RKDFVANVSHELRTPLTSIKGYVEALLDGGKDEPATATAFLEIIMRQS 421 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 NL+LD DLL +S+IESG++ EPV L + +++++ A++K I S Sbjct: 422 NRLNLILD---DLLQLSQIESGQVLFRREPVDLRALLERTVAVIKPLADKKHHTIELSLP 478 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTH----TSNEEVILRVRDT 744 + + D + Q+ +N+L NA+ +TP G+I I + TH T + + V D+ Sbjct: 479 DEYWVVEGDEERLVQVFINLLENAVKYTPDQGRISMAIRNATHMRAATPRPMIEIVVADS 538 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + + F ++ ++ GTGLGL + K +V+A+ G+ ++ +G+ Sbjct: 539 GIGIPEADRPRVFERFYRVDKARSRELGGTGLGLAIVKHIVEAHSGQVWVEGNTPRGSRF 598 Query: 805 EIIFPLYDTS 814 + P+ S Sbjct: 599 VVHLPVAQDS 608 >gi|153809580|ref|ZP_01962248.1| hypothetical protein BACCAC_03898 [Bacteroides caccae ATCC 43185] gi|149127783|gb|EDM19007.1| hypothetical protein BACCAC_03898 [Bacteroides caccae ATCC 43185] Length = 917 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 128/249 (51%), Gaps = 12/249 (4%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 ++W++ +L K AE KS FLA +SHEIRTPL AI+GFS ++ N +P Sbjct: 527 TKWEKMAQELKILKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSGLMVN-----CDDP 581 Query: 622 -RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 EY I+ + +L+L ++ND+LD+SKIESG + E +L + E +++Q Sbjct: 582 EEKAEYMEIIESNNDLLLRLINDILDLSKIESGILERKREKFNLAKVSGELYTMIQPKIT 641 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + + I D +KQ+ +N L+NA+ T SG I N + + Sbjct: 642 NPEVEFILGNSGPDCWIFLDRNRLKQVWMNFLTNAVKCTHSGH--IKMGYSLENGGIKVY 699 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D+GVG+ YE++ + FG+ + +GTGLGL +++A+++ G+ STP Sbjct: 700 VEDSGVGIP-YEVQN--RVFGRFQKLNEF-AQGTGLGLAISRAIIEGAGGEIGFTSTPGV 755 Query: 801 GTLIEIIFP 809 G+ P Sbjct: 756 GSTFWAWIP 764 >gi|148359676|ref|YP_001250883.1| response regulator TutC [Legionella pneumophila str. Corby] gi|148281449|gb|ABQ55537.1| response regulator TutC [Legionella pneumophila str. Corby] Length = 816 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 125/249 (50%), Gaps = 11/249 (4%) Query: 566 QEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 QE NK L A K + K+ F A VSHE+RTPL I+G E++ ++ P + Sbjct: 175 QEANKQLEEANKNLARLDQIKTQFFANVSHELRTPLMLILGSLEMLLAEKRLP---SFVL 231 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 I + ++L VNDLL+ISK+++GKM LH+ + L + + + I+L + E++ Sbjct: 232 NTLRRIQNNAQILLKHVNDLLNISKLDAGKMILHYANIDLVKLIQQTIALFEAQIPERKF 291 Query: 685 LIRTSFANNIPRIL---ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + F+ ++P L D ++ + +NILSNAI FTP ++ I T+ E L++ Sbjct: 292 V----FSMDLPDELQAQMDPDKIQHVLINILSNAIKFTPQNAKVRIRLAQTNPETCRLQI 347 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D G G+ E + F Q+ GTGLGL +AK V+ + G + G Sbjct: 348 EDNGSGIPPDLCETIFERFFQVEEPTTRTVGGTGLGLSIAKDFVELHGGSILAGNARNGG 407 Query: 802 TLIEIIFPL 810 + I PL Sbjct: 408 AIFTIELPL 416 >gi|37520204|ref|NP_923581.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35211197|dbj|BAC88576.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 1387 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 131/261 (50%), Gaps = 14/261 (5%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E +Q + + + S +KS+FLA +SHE+RTPL +++ + ++ + G L + + Sbjct: 682 EIEQARQSVEEKARQLALTSKYKSEFLANMSHELRTPLNSLLILARLLSDNAEGNL-SEK 740 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +EY I +G +L ++ND+LD++KIESG M++ E + + S+ + + AN++ Sbjct: 741 QVEYGRTIHSAGADLLGLINDILDLAKIESGTMSVEIEQMHFGDLRSQMERIFRQVANDR 800 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----- 736 + A N+PR +L D + ++Q+ N+LSNA FT G + T + Sbjct: 801 GLEFAVECAANLPRAMLTDPKRLQQVLKNLLSNAFKFTALGSVTLRVEMATGGWDPASES 860 Query: 737 -------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 V V DTG+G+ + + F Q S + GTGLGL +++ + Sbjct: 861 LNRASGVVAFSVIDTGIGIAPDKQRVIFEAFQQADGSTSRKYGGTGLGLSISREIARLLG 920 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G+ + S P +G+ + PL Sbjct: 921 GEIQLESEPGRGSTFTLFLPL 941 >gi|66045261|ref|YP_235102.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal [Pseudomonas syringae pv. syringae B728a] gi|63255968|gb|AAY37064.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Pseudomonas syringae pv. syringae B728a] Length = 645 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 71/253 (28%), Positives = 125/253 (49%), Gaps = 9/253 (3%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E ++ +L ++ AE+ + KSDFLA +SHE+RTP+ ++G ++++ Sbjct: 245 EQQRSVAQLIQTREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTHM----THE 300 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 EYA S +L ++ND+LD S+IE + + P +L E VS + A ++ Sbjct: 301 QSEYATLATESTEHLLRVINDILDFSRIERDALQMEGIPFNLAELVSASTHAFNHSAAQR 360 Query: 683 RILIRTSFANNIP--RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-- 738 +L+ + ++ D ++QI +N++ NA+ FT G + + ++E + Sbjct: 361 NLLLELHIQPGLETMNVIGDPTRIRQILVNLIGNALKFTERGKVCVDARWAMLDDERLHF 420 Query: 739 -LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V+D+G+G+ LE F Q +S R GTGLGLP+A+ + + G Y S Sbjct: 421 TCAVQDSGIGIDAERLESMFDAFKQADSSISRRYGGTGLGLPIARTLAERMGGTLYAESK 480 Query: 798 PAKGTLIEIIFPL 810 G+L + PL Sbjct: 481 EGSGSLFTLQIPL 493 >gi|301301240|ref|ZP_07207395.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851116|gb|EFK78845.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 358 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 103/387 (26%), Positives = 182/387 (47%), Gaps = 61/387 (15%) Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 +NKRK E S+LE GI +I+ + + +N F + E + Sbjct: 13 MNKRKRE-----YLSLLEYIDIGILVIDYKDRLTMSNELGKDFFDFDNE---------WK 58 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCY----- 554 Q+ Y I +LD+R+ +E++ L ++K + L++ + K + S+ Y Sbjct: 59 NQD-------YQNYIYNLDVRKLIEQVKLTKEDKKKQIVLKVDTVQKIVEVSAIYIPIDS 111 Query: 555 -----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKS-DFLARVSHEIRTPLTAIIGFSE 608 L + D++ A+KE K DF+ +SHEI+TP+TAI GFSE Sbjct: 112 KRYLIMLMLRDLT---------------AQKEVEKKQLDFVGNLSHEIKTPITAITGFSE 156 Query: 609 VIKNQRFGPLGNP----RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 + + G L + ++IE + D S L ++V+D++ IS++ + NL+ E V++ Sbjct: 157 TLLD---GALNDKEVSKQFIEIIH--DESTKLS-NLVDDMITISRLNEHE-NLNIELVNI 209 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 + V + + L +KR+ +R + + D +K I N++ NAI + G+ Sbjct: 210 FKLVKDTLQLFSHEIEKKRLNVRIEIDEELS-LYCDKLKLKHIITNLIQNAIRYNLENGE 268 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 I I + E + + DTG+G+++ + E+ + F ++ S GTGLGL + K Sbjct: 269 IKIKVQNDKKNEWVFVISDTGIGISDEDKERIFERFYRVDKSHSKAVGGTGLGLAVVKES 328 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLY 811 VDA G+ + S KGT +I P + Sbjct: 329 VDALSGRIKVKSQINKGTTFYVILPRF 355 >gi|295107996|emb|CBL21949.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162] Length = 720 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 119/233 (51%), Gaps = 13/233 (5%) Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 ++FL R+SH+IRTP+ I G + ++ + EY + + NL+L++VND+L Sbjct: 347 TEFLQRMSHDIRTPINGICGLVNMAEHY---ADNMEKQTEYRTKVKEASNLLLELVNDVL 403 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSV 704 D+SK+ESG++ L P +L + E +++ A E+ I I+ R ++ V Sbjct: 404 DMSKLESGEIVLEEIPFNLSKISREVFVVIEQMAAEQNIQIKWEKKEITHRDLIGSPGYV 463 Query: 705 KQIALNILSNAIHFTPSGGQIIISTT-------HTSNEEVILRVRDTGVGMTNYELEKAM 757 K++ +NILSNA+ + G I IS T+ E + RDTG+GMT + Sbjct: 464 KRVMMNILSNAMKYNRENGHIYISCIEIPSGQPETTTMEFV--CRDTGIGMTEEFQKHIF 521 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +PF Q + + + GTGLG+P+AK +++ G S GT I P Sbjct: 522 EPFAQEHSGSRTKFAGTGLGMPIAKKLIEKMGGTITFESVEGVGTTFVIRVPF 574 >gi|255091520|ref|ZP_05320998.1| two-component sensor histidine kinase [Clostridium difficile CIP 107932] gi|255313248|ref|ZP_05354831.1| two-component sensor histidine kinase [Clostridium difficile QCD-76w55] gi|255515938|ref|ZP_05383614.1| two-component sensor histidine kinase [Clostridium difficile QCD-97b34] Length = 389 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 135/252 (53%), Gaps = 19/252 (7%) Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 EKNK ++ + AE+E + + L +SH++RTPLT+I+G S I L N I+ Sbjct: 143 EKNKKANLE--AERER-LRGNLLRSISHDLRTPLTSILGSSSTI-------LENDDVIDK 192 Query: 627 ANYIDRSGNLVLDI------VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 ++ N+ D V ++L +++I+ GK+++ P +DE ++E+I V+ +AN Sbjct: 193 ETRVELLKNIYEDTSWLTHSVENILSMTRIDEGKLDIEKRPEVVDEIIAESILRVKKFAN 252 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + I +T+ + I + D+ ++Q+ +N++ NAI TP +I ++ SN+ V+ Sbjct: 253 SRDI--KTNIPDEIIIVHVDVLLIEQVLVNLIDNAIRHTPKNSKIELTVKKESNQ-VLFE 309 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D G G+ N ++ F S+ + G GLGL + K++V+A+ G+ F+ P+ Sbjct: 310 VADNGKGIPNEDIGNIFNRFYTKNKSRNLERRGIGLGLEICKSIVEAHGGEIVAFNNPSG 369 Query: 801 GTLIEIIFPLYD 812 G P+YD Sbjct: 370 GATFRFSIPMYD 381 >gi|254784846|ref|YP_003072274.1| signal transduction histidine-protein kinase BarA [Teredinibacter turnerae T7901] gi|237684144|gb|ACR11408.1| signal transduction histidine-protein kinase BarA [Teredinibacter turnerae T7901] Length = 573 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 81/238 (34%), Positives = 126/238 (52%), Gaps = 10/238 (4%) Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + +L EK + KS FLA +SHE+RTPL +IG +++ PL N + + Sbjct: 180 RTRLREKNVALEKALNAKSTFLANMSHELRTPLNGVIGMVSLLEET---PL-NAEQRKIS 235 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I S +L+++N++LD SKIE+GK+ L P + V+E + A +K++ R Sbjct: 236 GIISTSSKNLLEVINNILDFSKIEAGKVALTQAPFDPHKIVNEIYKISTANARDKKLDFR 295 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEEVILRVR--D 743 + A N+P R++ D +KQ+ LN++SNAI FT G + I + LR R D Sbjct: 296 LNIARNLPKRLIGDAFYLKQVLLNLISNAIKFTQMGYVEFAIEVIKLEADRTFLRFRISD 355 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +GVG+ + + F Q NS + GTGLGL ++ +V A+MG I + AKG Sbjct: 356 SGVGIDKKQQAVVFEKFAQEDNSTTRQFGGTGLGLSISSQIV-ASMGS-QINLSSAKG 411 >gi|255533739|ref|YP_003094111.1| PAS sensor protein [Pedobacter heparinus DSM 2366] gi|255346723|gb|ACU06049.1| PAS sensor protein [Pedobacter heparinus DSM 2366] Length = 797 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 97/370 (26%), Positives = 177/370 (47%), Gaps = 22/370 (5%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-- 502 +K+E E+M+L + ++ I I + + N A K+ G+ ++D+ + + Sbjct: 287 KKVEHELMKLSFVASKVNNAIVINDANNHVTWVNEAFEKITGFNLDDLKGRRLGDLIAGP 346 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYSLTM 558 + ++M + L Q+ L K+ + + L I + L + Sbjct: 347 ETDMALMERARAQT---KLNQSFTVDLLAYRKDGQPIWLSIYNTVVFNDLGNVEIEVEII 403 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI++ K+ + ++ AK+ A + S K FL+ +SHEIRTPL A+IG + ++ Sbjct: 404 IDITDKKRVEREMLEAKEQALQLSEAKEMFLSVMSHEIRTPLNAVIGMTHLLIEN----- 458 Query: 619 GNPRY--IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 +PR IE N + SG +L+I+ND+LD +K+E+G + L P S+ ++ I+ + Sbjct: 459 -DPRASQIEDLNILKFSGENLLNIINDILDFTKMETGNLQLEALPFSMKALTTDIITSLY 517 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST----THT 732 + A +K ++ + + IP + D + QI +N+L NAI FT G+II+S Sbjct: 518 VGATKKGNILELLYDDQIPHLSGDKTRLYQILMNLLGNAIKFTDQ-GKIILSVKLLEQDA 576 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 N + + DTG+G+ +L + F Q + GTGLGL + K +++ + Sbjct: 577 VNASLYFEISDTGIGIPEDKLSYIFETFTQAKTDISRKYGGTGLGLAITKKLLELYNSEI 636 Query: 793 YIFSTPAKGT 802 + S GT Sbjct: 637 QVKSREGAGT 646 >gi|241951126|ref|XP_002418285.1| histidine kinase osmosensor and regulator, putative [Candida dubliniensis CD36] gi|223641624|emb|CAX43585.1| histidine kinase osmosensor and regulator, putative [Candida dubliniensis CD36] Length = 2467 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 116/236 (49%), Gaps = 14/236 (5%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK AE + K+ FLA +SHEIRTP +++ F+ + + + EY I S Sbjct: 1983 AKMAAEDATDEKASFLANMSHEIRTPFNSLLSFAIFLLDTKLDSTQR----EYVEAIQSS 2038 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV-QLYANEKRILIRTSFAN 692 + L+I++ +L SKIE G L P SL++ + AI + + N++ I F N Sbjct: 2039 AMITLNIIDGILAFSKIEHGSFTLENAPFSLNDCIETAIQVSGETVLNDQ---IELVFCN 2095 Query: 693 NIPRI---LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTGV 746 N P I + DL +QI +N++ NAI FT G +I + EE + + V+D+G+ Sbjct: 2096 NCPEIEFVVGDLTRFRQIIINLVGNAIKFTTKGHVLISCDSRKLTEERVEINVSVQDSGI 2155 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 G+ K F Q+ S + + G+GLGL ++K + + G S GT Sbjct: 2156 GIPKKSQNKVFGAFSQVDGSARRQYGGSGLGLAISKKLTELMGGTIRFESEEGIGT 2211 >gi|254444470|ref|ZP_05057946.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198258778|gb|EDY83086.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 1323 Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 92/330 (27%), Positives = 159/330 (48%), Gaps = 15/330 (4%) Query: 483 KLFGYPVEDILRKPFTVFLE----QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 +LFGY E+ + PF + + P + L I +I L S + L Sbjct: 580 RLFGYEKEE-FKTPFDAWYNGVHPDDFPELEKKRLAAIAGETQYDEEFRIVLPSGEIRTL 638 Query: 539 LSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 +L I++ F + D++E ++ +L+ A+ + KS FLA +SHEI Sbjct: 639 KTL-AIVQMDEFGKAKRMVGINWDVTEAVVQREELARLAAEADDANRAKSQFLANMSHEI 697 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTP+ +IG + ++ + P N + A I SG +L ++ND+LD SK+E+GK++ Sbjct: 698 RTPINGVIGMTSLLLDS---PGLNSEQSKQARVIQSSGEALLALINDILDFSKVEAGKLD 754 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNA 715 L L + + + L+ A EK++ N +P R+ D ++QI +N+ NA Sbjct: 755 LEILDFDLRDTLDDLSLLLGQRAGEKQLEFICKADNQVPDRLRGDPGRLRQILINLAGNA 814 Query: 716 IHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 I FT +G ++++S + +LR V DTG+G++ + F Q +S Sbjct: 815 IKFTANGSVKVLVSLADRDEKTALLRFSVIDTGIGISEEKKRLLFSEFTQADSSTTRLYG 874 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 GTGLGL ++K +V+ G+ + S G+ Sbjct: 875 GTGLGLAISKQLVNLMDGEIGVTSEKGSGS 904 >gi|162456058|ref|YP_001618425.1| two-component hybrid histid