RPSBLAST alignment for GI: 254780413 and conserved domain: TIGR00229

>gnl|CDD|161776 TIGR00229, sensory_box, PAS domain S-box. The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. Length = 124

 Score = 45.0 bits (107), Expect = 9e-05
 Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 18/126 (14%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLT 514
           +I E++ D I +I+ EG IL  N A  ++FGY  E+++ R    +  E++   V      
Sbjct: 7   AIFESSPDAIIVIDLEGNILYVNPAFEEIFGYSAEELIGRNVLELIPEEDREEVR----- 61

Query: 515 EILSLDLRQTLEKITLGSTKEEK-------LLSLRIII--KKLPFSSCYSLTMHDISEWK 565
           E +   L    E ++       K        +S+  I               + DI+E K
Sbjct: 62  ERIERLLEGEREPVSEERRVRRKDGSEIWVEVSVSPIRTNGGELG---VVGIVRDITERK 118

Query: 566 QEKNKL 571
           Q +  L
Sbjct: 119 QAEEAL 124