RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal
transduction histidine kinase [Candidatus Liberibacter asiaticus str.
psy62]
         (820 letters)



>gnl|CDD|30987 COG0642, BaeS, Signal transduction histidine kinase [Signal
           transduction mechanisms].
          Length = 336

 Score =  156 bits (393), Expect = 3e-38
 Identities = 88/238 (36%), Positives = 129/238 (54%), Gaps = 13/238 (5%)

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
            +++       K +FLA +SHE+RTPLTAI G  E++      P       E    I+  
Sbjct: 104 LERLERLLRRAKREFLANISHELRTPLTAIRGLLELLLEGLLDPQR-----ELLEIIEEE 158

Query: 634 GNLVLDIVNDLLDISKIESG-KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
              +L +VNDLLD+S++E+G K+ L  E V L E + E + L+   A EK I +      
Sbjct: 159 AERLLRLVNDLLDLSRLEAGTKLKLLLELVDLAELLEEVVRLLAPLAQEKGIELAVDLPE 218

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
            +P +L D   ++Q+ +N+LSNAI +TP GG+I IS     +E+V + V DTG G+   E
Sbjct: 219 -LPYVLGDPERLRQVLVNLLSNAIKYTP-GGEITISVRQD-DEQVTISVEDTGPGIPEEE 275

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LE+  +PF +   S      GTGLGL + K +V+ + G   + S P KGT   I  PL
Sbjct: 276 LERIFEPFFRTDKS----RSGTGLGLAIVKRIVELHGGTISVESEPGKGTTFTIRLPL 329


>gnl|CDD|32387 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal
           transduction mechanisms].
          Length = 890

 Score =  137 bits (346), Expect = 1e-32
 Identities = 73/240 (30%), Positives = 121/240 (50%), Gaps = 11/240 (4%)

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP-LGNPRYIEYANYI- 630
            A+  AE+E    S  LA +SH++RTPLTAI+G +E +     G  L      E  + I 
Sbjct: 649 QARLAAERERLR-SALLASISHDLRTPLTAIMGAAETLL--LDGEALSPEDRAELLSSIR 705

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           + S  L   +V +LLD+++++SG +NL  + V ++E V EA+  ++      +  I  S 
Sbjct: 706 EESERLTR-LVTNLLDMTRLQSGGVNLKLDWVLVEEVVGEALQRLRKRFTGHK--IVVSV 762

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
             ++P I  D   ++Q+ +N+L NA+ + P G +I I+      E V+  V D G G+  
Sbjct: 763 PVDLPLIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVE-RENVVFSVIDEGPGIPE 821

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            ELE+    F +       R  G GLGL + + +V+A+ G     + P  G +     P+
Sbjct: 822 GELERIFDKFYRGNKESATR--GVGLGLAICRGIVEAHGGTISAENNPGGGAIFVFTLPV 879


>gnl|CDD|34607 COG5002, VicK, Signal transduction histidine kinase [Signal
           transduction mechanisms].
          Length = 459

 Score =  135 bits (341), Expect = 5e-32
 Identities = 96/371 (25%), Positives = 177/371 (47%), Gaps = 37/371 (9%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
            E E  +L S+L   +DG+   +R G I+  N+   K+ G   ED L +     L+    
Sbjct: 106 TEQERRKLDSVLAYMTDGVIATDRRGKIILINKPALKMLGVSKEDALGRSILELLK---- 161

Query: 507 SVMNHYLTEILSL-DLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYSLTMHDI 561
                 + +  +  DL +  + + L S+ EE+   LR+    I ++  F S     +HD+
Sbjct: 162 ------IEDTYTFEDLVEKNDSLLLDSSDEEEGYVLRVNFSVIQRESGFISGLIAVLHDV 215

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGN 620
           +E               EK    + +F+A VSHE+RTPLT++  + E ++   +      
Sbjct: 216 TE--------------QEKVERERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIA 261

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           PR++            ++ +VNDLL +S++++ +  L+ E ++    ++E I+  ++   
Sbjct: 262 PRFLRVTL---NETERMIRLVNDLLQLSRMDNARYQLNKEWINFTAFLNEIINRFEMILK 318

Query: 681 EKRI--LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           ++ I   +R     +I  +  D   + Q+  NI+SNA+ ++P GG+I +S        V 
Sbjct: 319 KETIARFVRDIPKQDI-WVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQR-ETWVE 376

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + + D G+G+   +LEK    F ++  ++  +  GTGLGL +AK +V A+ G+ +  S  
Sbjct: 377 ISISDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEIVQAHGGRIWAESEE 436

Query: 799 AKGTLIEIIFP 809
            KGT      P
Sbjct: 437 GKGTTFSFTLP 447


>gnl|CDD|34605 COG5000, NtrY, Signal transduction histidine kinase involved in
           nitrogen fixation and metabolism regulation [Signal
           transduction mechanisms].
          Length = 712

 Score =  101 bits (253), Expect = 9e-22
 Identities = 77/378 (20%), Positives = 151/378 (39%), Gaps = 40/378 (10%)

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            K  +E     L ++L   + G+   +  G I + N +  ++ G P + +L +  +    
Sbjct: 361 AKDALEQRRRFLEAVLSGLTAGVIGFDNRGCITTVNPSAEQILGKPFDQLLGQSLSAIA- 419

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                 +     E  +        ++ L    EE+ L+++   +     + Y +T  DI+
Sbjct: 420 ----PELEEVFAEAGAAARTDKRVEVKLAREGEERTLNVQATREPEDNGNGYVVTFDDIT 475

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +       L  A++     S+   D   R++HEI+ PLT I   +E +  ++ G   +  
Sbjct: 476 D-------LVIAQR-----SAAWGDVARRIAHEIKNPLTPIQLSAERLL-RKLGKEIDED 522

Query: 623 YIEYANYIDRSGNLVLDI---VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              +    D     V DI   V++    +++ + K     E   L   + E   L ++  
Sbjct: 523 REVFDRCTDTIIRQVEDIKRMVDEFRAFARMPAPK----LEKSDLRALLKEVSFLYEIGN 578

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH------FTPSGGQIIISTTHTS 733
           +   I+    F       +AD   + Q+  N+L NA               +I  +   +
Sbjct: 579 DH--IVFAAEFGGEPLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDA 636

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           +  +++ V D G G       +A++P+         R +GTGLGL + K +V+ + G+  
Sbjct: 637 DGRIVVDVIDNGKGFPRENRHRALEPY------VTTREKGTGLGLAIVKKIVEEHGGRLE 690

Query: 794 IFSTP-AKGTLIEIIFPL 810
           + + P   G +I I FPL
Sbjct: 691 LHNAPDFDGAMIRIKFPL 708


>gnl|CDD|145582 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and
           HSP90-like ATPase.  This family represents the
           structurally related ATPase domains of histidine kinase,
           DNA gyrase B and HSP90.
          Length = 111

 Score = 90.1 bits (224), Expect = 2e-18
 Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 2/112 (1%)

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            D   ++Q+  N+L NAI   P+GG+I ++        + + V D G+G+   +L K  +
Sbjct: 1   GDEDRLRQVLSNLLDNAIKHAPAGGEIEVTLERD-GGRLRITVEDNGIGIPPEDLPKIFE 59

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF +     + +  GTGLGL + + +V+ + G   + S P  GT      PL
Sbjct: 60  PFFRTDKDSR-KVGGTGLGLSIVRKLVELHGGTITVESEPGGGTTFTFTLPL 110


>gnl|CDD|33974 COG4251, COG4251, Bacteriophytochrome (light-regulated signal
           transduction histidine kinase) [Signal transduction
           mechanisms].
          Length = 750

 Score = 83.1 bits (205), Expect = 3e-16
 Identities = 56/237 (23%), Positives = 110/237 (46%), Gaps = 14/237 (5%)

Query: 571 LSHAKKIA------EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           L HA+++A      E+ ++    F    SH+++ PL  I  +++++  +    L      
Sbjct: 504 LRHAEELAQLRRELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEE-AK 562

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E+  +I R  +L+  +++DLL  SK+  G      +P  + + V + +  +     +   
Sbjct: 563 EFITFISRLTSLMQQLIDDLLTYSKL--GLTEAPLQPTDVQKVVDKVLLELSQRIADTGA 620

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            IR +    +P + AD   + Q+  N+++NAI F       I  +     +E    VRD 
Sbjct: 621 EIRIA---PLPVVAADATQLGQVFQNLIANAIKFGGPENPDIEISAERQEDEWTFSVRDN 677

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           G+G+     E+    F ++    +    GTGLGL + K + + + G+ ++ STP +G
Sbjct: 678 GIGIDPAYFERIFVIFQRL--HSRDEYLGTGLGLAICKKIAERHQGRIWVESTPGEG 732


>gnl|CDD|33642 COG3852, NtrB, Signal transduction histidine kinase, nitrogen
           specific [Signal transduction mechanisms].
          Length = 363

 Score = 80.3 bits (198), Expect = 2e-15
 Identities = 80/370 (21%), Positives = 148/370 (40%), Gaps = 43/370 (11%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           IL    + + +++ E  I   N A  +L       +     +  L     S++   L ++
Sbjct: 12  ILNNLINPVLLVDDELAIHYANPAAEQLLAVSARRLAGTRLSELLPF--GSLLLSLLDQV 69

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEW-KQEKNKLSHA 574
           L      T  ++TL       ++ L   +  +P       L  H      + ++ +  HA
Sbjct: 70  LERGQPVTEYEVTLVILGRSHIVDL--TVAPVPEEPGSVLLEFHPRDMQRRLDREQTQHA 127

Query: 575 KKIAEKESSHKSDFLAR-VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           ++ A K        L R ++HEI+ PL  I G +++++      L +    E    I   
Sbjct: 128 QQRAVKG-------LVRGLAHEIKNPLGGIRGAAQLLERA----LPDEALRELTQLIIEE 176

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
                D + +L+D  ++   +      PV++ E +    +LV+    +   LIR  +  +
Sbjct: 177 ----ADRLRNLVDRLEVLGPQRPGDRVPVNIHEVLERVRALVEAEFADNVRLIR-DYDPS 231

Query: 694 IPRILADLRSVKQIALNILSNAIH----FTPSGGQIIIST-------THTSNEEVILR-- 740
           +P +L D   + Q+ LN++ NA          GG+II+ T          +   + L   
Sbjct: 232 LPEVLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLE 291

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G G+     +    P          R  GTGLGL LA+ ++D + GK    S P +
Sbjct: 292 VIDNGPGVPPDLQDHLFYPM------VSGREGGTGLGLALAQNLIDQHGGKIEFDSWPGR 345

Query: 801 GTLIEIIFPL 810
            T+  ++ P+
Sbjct: 346 -TVFRVLLPI 354


>gnl|CDD|28956 cd00075, HATPase_c, Histidine kinase-like ATPases; This family
           includes several ATP-binding proteins for example:
           histidine kinase, DNA gyrase B, topoisomerases, heat
           shock protein HSP90, phytochrome-like ATPases and DNA
           mismatch repair proteins.
          Length = 103

 Score = 80.4 bits (198), Expect = 2e-15
 Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 2/105 (1%)

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           ++Q+ LN+LSNAI  TP GG  I  +     + + +RV D G G+   +LE+  + F   
Sbjct: 1   LQQVLLNLLSNAIKHTPEGGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSDG 60

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             S++  G GTGLGL + K +V+ + G+  + S P  GT   I  
Sbjct: 61  SRSRK--GGGTGLGLSIVKKLVELHGGRIEVESEPGGGTTFTITL 103


>gnl|CDD|33926 COG4191, COG4191, Signal transduction histidine kinase regulating
           C4-dicarboxylate transport system [Signal transduction
           mechanisms].
          Length = 603

 Score = 78.0 bits (192), Expect = 9e-15
 Identities = 50/228 (21%), Positives = 93/228 (40%), Gaps = 22/228 (9%)

Query: 590 ARVSHEIRTPLTAIIGFSE----VIKNQRFGPL-GNPRYIEYANYIDRSGNLVLDIVNDL 644
           A ++HE+  PL AI  +++    +++  R      N   I  +   +R       I   L
Sbjct: 389 AGIAHELNQPLAAIRTYADNARLLLERGRTEEARENLERI--SALTERMAA----ITAHL 442

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
               K  + K      PVSL EA+  A+ L++       + +     +    ++A+   +
Sbjct: 443 ----KSFARKSRDAAGPVSLREAIEGALELLRGRLRAAGVELELDLPDAPLWVMANEIRL 498

Query: 705 KQIALNILSNAIHFT--PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           +Q+ +N+L NA+         ++ I        +V+L VRD G G+    L    +PF  
Sbjct: 499 EQVLVNLLQNALDAMAGQEDRRLSIRAQ-REGGQVVLTVRDNGPGIAPEALPHLFEPF-- 555

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
              + +  G+G GLGL +++ +     G   + + P  G    I    
Sbjct: 556 --FTTKPVGKGLGLGLAISQNIARDLGGSLEVANHPEGGASFTIELRR 601


>gnl|CDD|144196 pfam00512, HisKA, His Kinase A (phosphoacceptor) domain.
           dimerization and phosphoacceptor domain of histidine
           kinases.
          Length = 66

 Score = 71.0 bits (175), Expect = 1e-12
 Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS+FLA +SHE+RTPLTAI G+ E++ +            EY   I RS   +L ++NDL
Sbjct: 2   KSEFLANLSHELRTPLTAIRGYLELLLDTELSEEQR----EYLETILRSAERLLRLINDL 57

Query: 645 LDISKIESG 653
           LD+S+IE+G
Sbjct: 58  LDLSRIEAG 66


>gnl|CDD|119399 cd00082, HisKA, Histidine Kinase A (dimerization/phosphoacceptor)
           domain; Histidine Kinase A dimers are formed through
           parallel association of 2 domains creating 4-helix
           bundles; usually these domains contain a conserved His
           residue and are activated via trans-autophosphorylation
           by the catalytic domain of the histidine kinase. They
           subsequently transfer the phosphoryl group to the Asp
           acceptor residue of a response regulator protein.
           Two-component signalling systems, consisting of a
           histidine protein kinase that senses a signal input and
           a response regulator that mediates the output, are
           ancient and evolutionarily conserved signaling
           mechanisms in prokaryotes and eukaryotes..
          Length = 65

 Score = 70.7 bits (174), Expect = 1e-12
 Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 3/65 (4%)

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           K +FLA VSHE+RTPLTAI G  E+++ +    L +    EY   I      +L ++NDL
Sbjct: 4   KGEFLANVSHELRTPLTAIRGALELLEEE---LLDDEEQREYLERIREEAERLLRLINDL 60

Query: 645 LDISK 649
           LD+S+
Sbjct: 61  LDLSR 65


>gnl|CDD|33927 COG4192, COG4192, Signal transduction histidine kinase regulating
           phosphoglycerate transport system [Signal transduction
           mechanisms].
          Length = 673

 Score = 63.9 bits (155), Expect = 2e-10
 Identities = 60/262 (22%), Positives = 117/262 (44%), Gaps = 37/262 (14%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF----SEVIKNQRFGPLGN 620
           K+ + +L  A K+A    +     +  ++HEI  PL A+  +       ++         
Sbjct: 436 KKTQGELIQAAKLAVVGQT-----MTSLAHEINQPLNAMSAYLFSARLALEEAPSAQA-- 488

Query: 621 PRYIEYANYIDRSGNLV---LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                 A  +D+  NL      IVN L   ++  S   +L  +PV L+  V +A  L+Q 
Sbjct: 489 ------ATSLDKIENLTERMGKIVNSLRQFARKNSSDESL--QPVRLNSVVEQAWELLQT 540

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI----HFTPSGGQIIISTTHTS 733
               KR  I+     +   ++ D  S++Q+ +N++ NA+    HF P    I +    T 
Sbjct: 541 KH--KRRQIKLINPTDDLMVMGDAVSIEQVLVNLIVNALDASTHFAP---WIKLIALGTE 595

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
            E + + + D G G  +  ++K + PF     S+++   G GLGL +++++++   G+  
Sbjct: 596 QEMLRIAIIDNGQGWPHELVDKLLTPF---TTSKEV---GLGLGLSISQSLMEQMQGRLA 649

Query: 794 IFSTPAKGTLIEIIFPLYDTSH 815
           + ST  K  ++ + F + +   
Sbjct: 650 LASTLTKNAMVILEFQVDEKYR 671


>gnl|CDD|33099 COG3290, CitA, Signal transduction histidine kinase regulating
           citrate/malate metabolism [Signal transduction
           mechanisms].
          Length = 537

 Score = 58.3 bits (141), Expect = 8e-09
 Identities = 72/390 (18%), Positives = 150/390 (38%), Gaps = 75/390 (19%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY--PV 489
           G+EPE++ T + +R+         ++L++  +G+  ++++G+I   N+A  KL G   P 
Sbjct: 204 GLEPEEIATLLEERQ---------AMLQSIKEGVIAVDKKGVITLINQAAQKLLGLRQPS 254

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            D + +     L  ++              DL + LE       +E ++    ++  ++P
Sbjct: 255 GDPIGRSIVEVLPPDS--------------DLPEVLETGKPQHDEEIRINGRLLVANRVP 300

Query: 550 FSS-----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
             S        +T  D +E K+   +L+  ++ AE         L   SHE    L  I+
Sbjct: 301 IRSGGQIVGAIITFRDKTEIKKLTEQLTGVRQYAEA--------LRAQSHEFMNKLHTIL 352

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G  +                      D + + +     +      I+S    +       
Sbjct: 353 GLLQ------------------LGEYDDALDYIQQESEE--QQELIDSLSEKIK------ 386

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL--NILSNAIHFT--- 719
           D  ++  +      A E  + +     + +P++ ++L+    + +  N++ NA+      
Sbjct: 387 DPVLAGFLLGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAP 446

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
               +I +S +   + E+++ V DTG G+      +      +   S +    G G+GL 
Sbjct: 447 EENKEIELSLSDRGD-ELVIEVADTGPGIP----PEVRDKIFEKGVSTK-NTGGRGIGLY 500

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L K +V+   G   + S   +GT   I  P
Sbjct: 501 LVKQLVERLGGSIEVESEKGQGTRFSIYIP 530


>gnl|CDD|35739 KOG0519, KOG0519, KOG0519, Sensory transduction histidine kinase
           [Signal transduction mechanisms].
          Length = 786

 Score = 50.4 bits (120), Expect = 2e-06
 Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 16/185 (8%)

Query: 588 FLARVSHEIRTPLTA--IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           FLA +SHEIRTPL    + G S+   +               N    S   +L ++ND+L
Sbjct: 224 FLATLSHEIRTPLNGGMLGGLSDTDLD--------SDQRLILNTDRVSAKSLLSLLNDIL 275

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRSV 704
           D+SK+ESGK  L  +   L   ++  ISL+   +  K  ++    ++ +PR +  D   +
Sbjct: 276 DLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLDLSSGVPRNVRGDEARL 335

Query: 705 KQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVR--DTGVGMTNYELEKAMKP 759
           +Q+  N++SNAI FT +G      I     + + +V+LR +      G    +  + M  
Sbjct: 336 RQVIANLVSNAIKFTHAGHLEESVIAREELSESNDVLLRAKEEAHMAGKARIDFLQKMSH 395

Query: 760 FGQIP 764
             + P
Sbjct: 396 AMRAP 400


>gnl|CDD|32384 COG2202, AtoS, FOG: PAS/PAC domain [Signal transduction
           mechanisms].
          Length = 232

 Score = 46.1 bits (106), Expect = 4e-05
 Identities = 39/239 (16%), Positives = 74/239 (30%), Gaps = 14/239 (5%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
             +   G + YAN +   L  Y + + +    GL   L          +   +L   +  
Sbjct: 3   LVLDRDGRIIYANEAAEELLGYSAEELL----GLLLALHPEDRDRLRELLRRLLAGEELL 58

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                      +       A      E        +       +  + +  +  +     
Sbjct: 59  SEELRLVRKDGEERWVELSAAPLRDGE------GRVLGLLGLRDITERKRAEEALRESEE 112

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +L ++LEA+ DGI +++ +G IL  N A  +L GY  E+ L +  +  +           
Sbjct: 113 RLRALLEASPDGIWVLDEDGRILYANPAAEELLGYSPEEELGRGLSDLIHPEDEERRELE 172

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQE 567
           L   L+      LE       K+ + +   +                    DI+E KQ 
Sbjct: 173 LARALAEGRGGPLEIEYRVRRKDGERVRWILSRISPVRDDGEIVGVVGIARDITERKQA 231


>gnl|CDD|144544 pfam00989, PAS, PAS fold.  The PAS fold corresponds to the
           structural domain that has previously been defined as
           PAS and PAC motifs. The PAS fold appears in archaea,
           eubacteria and eukarya.
          Length = 112

 Score = 45.5 bits (108), Expect = 6e-05
 Identities = 15/54 (27%), Positives = 28/54 (51%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
           ILE+  DGI +++ +G IL  N A  +L G   E+++ K     + +   + + 
Sbjct: 6   ILESLPDGIFVVDEDGRILYVNAAAEELLGLSREEVIGKSLLDLIPEEDDAEVA 59


>gnl|CDD|33622 COG3829, RocR, Transcriptional regulator containing PAS, AAA-type
           ATPase, and DNA-binding domains [Transcription / Signal
           transduction mechanisms].
          Length = 560

 Score = 43.0 bits (101), Expect = 4e-04
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           IL++  DG+ +++ +GII+  N+A +KL G   E++L K     +     S +   L  
Sbjct: 122 ILDSIDDGLLVVDEDGIIIYYNKAYAKLLGLSPEEVLGKHLLDVVSAGEDSTLLEVLRT 180


>gnl|CDD|34223 COG4585, COG4585, Signal transduction histidine kinase [Signal
           transduction mechanisms].
          Length = 365

 Score = 41.7 bits (97), Expect = 0.001
 Identities = 42/160 (26%), Positives = 60/160 (37%), Gaps = 30/160 (18%)

Query: 657 LHFEPVSLDEAVSEAISLVQLYAN-EKRILIRTSFANNIPRILADLRSVKQIAL-----N 710
               PV L+       +L  L A+ E+R  I      ++   L  L    + AL      
Sbjct: 230 RDLRPVELEGL-GLVEALRALLADFEERTGITVDL--SLGSELERLPPEAEDALFRIVQE 286

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
            L+NAI    +    +  T   +++E+ L V D GVG            F          
Sbjct: 287 ALTNAIRH--AQATEVRVTLERTDDELRLEVIDNGVG------------FDPDK------ 326

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            EG G GL   +  V+A  G   I S P +GT + I  PL
Sbjct: 327 -EGGGFGLLGMRERVEALGGTLTIDSAPGQGTTVTITLPL 365


>gnl|CDD|29035 cd00130, PAS, PAS domain; PAS motifs appear in archaea, eubacteria
           and eukarya. Probably the most surprising identification
           of a PAS domain was that in EAG-like K+-channels. PAS
           domains have been found to bind ligands, and to act as
           sensors for light and oxygen in signal transduction..
          Length = 103

 Score = 38.7 bits (89), Expect = 0.006
 Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 2/103 (1%)

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
             DG+ +++ +G IL  N A  +L GY  E+++ K     +       +   L  +LS  
Sbjct: 1   LPDGVIVLDLDGRILYANPAAEQLLGYSPEELIGKSLLDLIHPEDREELRERLENLLSGG 60

Query: 521 LRQTLEKITLGSTKEEK--LLSLRIIIKKLPFSSCYSLTMHDI 561
              TLE             L+SL  I  +          + DI
Sbjct: 61  EPVTLEVRLRRKDGSVIWVLVSLTPIRDEGGEVIGLLGVVRDI 103


>gnl|CDD|30988 COG0643, CheA, Chemotaxis protein histidine kinase and related
           kinases [Cell motility and secretion / Signal
           transduction mechanisms].
          Length = 716

 Score = 38.0 bits (88), Expect = 0.010
 Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 26/115 (22%)

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE--LEKAM-KPFGQIPNSQQIRGE---- 772
           P  G I +S  H  N  +++ V D G G+ + E   EKA+ +       ++ +  E    
Sbjct: 461 PEEGTITLSAYHEGNN-IVIEVSDDGAGI-DREKIREKAIERGLITEEEAETLSDEEILN 518

Query: 773 -----------------GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                            G G+G+ + K  ++   G   + S P KGT   I  PL
Sbjct: 519 LIFAPGFSTAEQVTDVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIRLPL 573


>gnl|CDD|33093 COG3283, TyrR, Transcriptional regulator of aromatic amino acids
           metabolism [Transcription / Amino acid transport and
           metabolism].
          Length = 511

 Score = 36.1 bits (83), Expect = 0.043
 Identities = 44/235 (18%), Positives = 91/235 (38%), Gaps = 43/235 (18%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP---------FT 498
           E E + L ++LEA  + +  ++ +G +   N A  +LFG   + +             F 
Sbjct: 76  EREHLALSALLEALPEPVLSVDMKGKVDMANPAACQLFGRKEDRLRGHTAAQLINGFNFL 135

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF---SSCYS 555
            +LE       N ++  I   +    +  + L    +E +L+  +++ +          +
Sbjct: 136 RWLEGEPQRSHNEHVV-INGQNFLMEITPVYLQDENDEHVLAGAVVMLRSTNRMGEQLQN 194

Query: 556 LTMHDISEWKQ-------EKNKLSHAKKIA--------EKESSHKSDFLARVSHEI---- 596
           +   D+S ++Q        K+ +  A+K+A          E+    D LA+  H      
Sbjct: 195 VAAQDVSGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPRH 254

Query: 597 RTPLTAIIGFS---EVIKNQRFG----PLGNPRYIEYANYIDRSGNLVLDIVNDL 644
             P  A+   S   +  +++ FG      G   + E AN     G ++LD + ++
Sbjct: 255 SKPFLALNCASLPEDAAESELFGHAPGDEGKKGFFEQAN----GGTVLLDEIGEM 305


>gnl|CDD|32791 COG2972, COG2972, Predicted signal transduction protein with a
           C-terminal ATPase domain [Signal transduction
           mechanisms].
          Length = 456

 Score = 32.8 bits (74), Expect = 0.44
 Identities = 35/140 (25%), Positives = 52/140 (37%), Gaps = 17/140 (12%)

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF----TPSGGQIIISTTHT 732
           L   + RI  R      I   L  L   K +   ++ NAI         GG I IS    
Sbjct: 324 LEIQKLRIGDRLEVPLPIDEELEPLIDPKLVLQPLVENAIEHGIEPKRPGGSIAISAK-K 382

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK- 791
            ++ + + + D G G+   +LE                   +G+GL   K  +    G+ 
Sbjct: 383 QDDVIQISISDNGPGIDEEKLEGL----------STKGENRSGIGLSNVKERLKLYFGEP 432

Query: 792 -FYIFSTPAKGTLIEIIFPL 810
              I S P KGT ++II P 
Sbjct: 433 GLSIDSQPGKGTFVQIIIPK 452


>gnl|CDD|35838 KOG0618, KOG0618, KOG0618, Serine/threonine phosphatase 2C
           containing leucine-rich repeats, similar to SCN
           circadian oscillatory protein (SCOP) [Signal
           transduction mechanisms].
          Length = 1081

 Score = 31.9 bits (72), Expect = 0.78
 Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 2/69 (2%)

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLT--PETVDKCPIPFFVYSHGNLFYANPSFL 349
           L  N   SF     R    L      G  LT  P+TV        + +H N   + P   
Sbjct: 390 LSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELA 449

Query: 350 LLTKYKSVD 358
            L + K +D
Sbjct: 450 QLPQLKVLD 458


>gnl|CDD|185751 cd09238, V_Alix_like_1, Protein-interacting V-domain of an
           uncharacterized family of the V_Alix_like superfamily.
           This domain family is comprised of uncharacterized plant
           proteins. It belongs to the V_Alix_like superfamily
           which includes the V-shaped (V) domains of Bro1 and
           Rim20 (also known as PalA) from Saccharomyces
           cerevisiae, mammalian Alix (apoptosis-linked gene-2
           interacting protein X), (His-Domain) type N23 protein
           tyrosine phosphatase (HD-PTP, also known as PTPN23), and
           related domains. Alix, also known as apoptosis-linked
           gene-2 interacting protein 1 (AIP1), participates in
           membrane remodeling processes during the budding of
           enveloped viruses, vesicle budding inside late endosomal
           multivesicular bodies (MVBs), and the abscission
           reactions of mammalian cell division. It also functions
           in apoptosis. HD-PTP functions in cell migration and
           endosomal trafficking, Bro1 in endosomal trafficking,
           and Rim20 in the response to the external pH via the
           Rim101 pathway. Alix, HD-PTP, Bro1, and Rim20 all
           interact with the ESCRT (Endosomal Sorting Complexes
           Required for Transport) system. The mammalian Alix
           V-domain (belonging to a different family) contains a
           binding site, partially conserved in the superfamily,
           for the retroviral late assembly (L) domain YPXnL motif.
           The Alix V-domain is also a dimerization domain. In
           addition to this V-domain, members of the
           V_Alix_Rim20_Bro1_like superfamily also have an
           N-terminal Bro1-like domain, which binds components of
           the ESCRT-III complex. The Bro1-like domains of Alix and
           HD-PTP can also bind to human immunodeficiency virus
           type 1 (HIV-1) nucleocapsid. Many members of the
           V_Alix_like superfamily also have a proline-rich region
           (PRR).
          Length = 339

 Score = 30.5 bits (69), Expect = 2.1
 Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 23/124 (18%)

Query: 357 VDDIEIAGGLSTLLDAPK----LSDNNAIKPVMLYRS---DRTCIAASARLHTIQWNREN 409
           V+ ++I+GGL+ L         L             S   + T  +A+   +   W R  
Sbjct: 65  VEAVQISGGLAALEGELPRLRELRRVCTELLAAAQESLEAEATEDSAARTQYGTAWTRPP 124

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
           S  +T   +E+ N+F  N+ Q G    D D  + +R            +E   DG+ I++
Sbjct: 125 SATLTKNLWERLNRFRVNLEQAG----DSDESLRRR------------IEDAMDGMLILD 168

Query: 470 REGI 473
            E  
Sbjct: 169 DEPA 172


>gnl|CDD|32403 COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin),
           alpha and beta subunits [Energy production and
           conversion].
          Length = 317

 Score = 30.2 bits (68), Expect = 2.3
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
            LR +  IA       IH T   G  I   +    ++V+  +R+ G
Sbjct: 46  TLRKIADIAEKYGDGLIHITSRQGLEIPGISPEDADDVVEELREIG 91


>gnl|CDD|33243 COG3437, COG3437, Response regulator containing a CheY-like
           receiver domain and an HD-GYP domain [Transcription /
           Signal transduction mechanisms].
          Length = 360

 Score = 30.3 bits (68), Expect = 2.3
 Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 9/112 (8%)

Query: 631 DRSGNLVLDIVNDLLDISK-IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
            R   ++L    D  D  + +E+G  +   +P+S  E V+   S +QL  NE  +L +  
Sbjct: 88  RRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLKRNEDFLLDQNL 147

Query: 690 FANNIPRILADLRSVKQIALN-------ILSNAIHFTPSGGQIIISTTHTSN 734
           +      +      + QI  N       + +         G  +      S 
Sbjct: 148 YLEL-QELRRRTEELAQIEDNLDETLEELAALLEVRDYETGDHLERVAQYSE 198


>gnl|CDD|35367 KOG0145, KOG0145, KOG0145, RNA-binding protein ELAV/HU (RRM
           superfamily) [RNA processing and modification].
          Length = 360

 Score = 29.2 bits (65), Expect = 4.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           MT  ELE+   PFG+I  S+ +  + TGL
Sbjct: 139 MTQKELEQIFSPFGRIITSRILVDQVTGL 167


>gnl|CDD|37358 KOG2147, KOG2147, KOG2147, Nucleolar protein involved in 40S
           ribosome biogenesis [Translation, ribosomal structure
           and biogenesis].
          Length = 823

 Score = 29.2 bits (65), Expect = 5.0
 Identities = 29/113 (25%), Positives = 43/113 (38%), Gaps = 14/113 (12%)

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR------II 544
           +I    F + LE      +   L E L  D    +EK+T     E K L+L+      I 
Sbjct: 669 EIFFPIFLLLLEYLQAESLPQELQEKL-EDTLALVEKLT--GFAERKPLALQKHKPVAIR 725

Query: 545 IKKLPFSSCYSLTM-HDISEWKQEKNKLSH----AKKIAEKESSHKSDFLARV 592
           +K   F   +      D  + + E  KL       +K A +E    + FLAR 
Sbjct: 726 LKMPKFEENFDPDKKRDPDKERSELKKLKAKLKRERKGAIRELRKDAAFLARK 778


>gnl|CDD|36016 KOG0797, KOG0797, KOG0797, Actin-related protein [Cytoskeleton].
          Length = 618

 Score = 29.2 bits (65), Expect = 5.3
 Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 15/106 (14%)

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS------LTEYYAH 249
           L  +L +KF HL       + +  +      ++  PP L+   K+        L  +Y  
Sbjct: 340 LLNQLKEKFCHLRA-----AELGVQLTVFSYREPNPPTLKYTFKLGDEVMLAPLALFYP- 393

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT-KKQYFGTLQN 294
             ++   E      ++    P++ED            KQ FG   N
Sbjct: 394 --NLFVIEGTKSHKNQSFPQPDREDLFDYEYLLEDTWKQDFGGGGN 437


>gnl|CDD|111641 pfam02768, DNA_pol3_beta_3, DNA polymerase III beta subunit,
           C-terminal domain.  A dimer of the beta subunit of DNA
           polymerase beta forms a ring which encircles duplex DNA.
           Each monomer contains three domains of identical
           topology and DNA clamp fold.
          Length = 121

 Score = 28.4 bits (64), Expect = 8.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILAD 700
           +A++ V L ANEK   +R SF     ++ A+
Sbjct: 21  KALARVALLANEKNRGVRLSFEEGQLKLTAN 51


>gnl|CDD|33706 COG3920, COG3920, Signal transduction histidine kinase [Signal
           transduction mechanisms].
          Length = 221

 Score = 28.3 bits (63), Expect = 9.6
 Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 25/110 (22%)

Query: 707 IALN-ILSNAI-HFTPSG--GQIIIS-TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
           + ++ +++NA+ H   S   G+I I+ +        +L V D G G              
Sbjct: 125 LIVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGP------------- 171

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANM-GKFYIFSTPAKGTLIEIIFPL 810
                 +      G GL L + +V   + G+         GT   + FPL
Sbjct: 172 ----PVEAPLSRGGFGLQLVERLVPEQLGGELEDER--PDGTEFRLRFPL 215


>gnl|CDD|143985 pfam00232, Glyco_hydro_1, Glycosyl hydrolase family 1. 
          Length = 454

 Score = 28.1 bits (63), Expect = 9.8
 Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 4/24 (16%)

Query: 175 FSGFRG----FGIVHVNRVDNDPR 194
           F    G    FG+V+V+R +   R
Sbjct: 413 FEWANGYSKRFGLVYVDRYETQER 436


>gnl|CDD|30660 COG0312, TldD, Predicted Zn-dependent proteases and their
           inactivated homologs [General function prediction only].
          Length = 454

 Score = 28.0 bits (62), Expect = 9.9
 Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 4/98 (4%)

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
               +   ++ I G     + +     G+  + E     +            LL+   + 
Sbjct: 166 ERTRVSLSVSVIAGEGGRGEERSGRGGGSRGFEELLEEPEEVAEEAARRALSLLEARPVP 225

Query: 652 SGKMNLHFEP----VSLDEAVSEAISLVQLYANEKRIL 685
           SG+  +   P    V L EA+  A+   ++Y  E  +L
Sbjct: 226 SGRYPVILSPEAAGVLLHEALGHALEGDRVYKGESSLL 263


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.316    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0680    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 9,881,608
Number of extensions: 534510
Number of successful extensions: 1282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1253
Number of HSP's successfully gapped: 42
Length of query: 820
Length of database: 6,263,737
Length adjustment: 102
Effective length of query: 718
Effective length of database: 4,059,619
Effective search space: 2914806442
Effective search space used: 2914806442
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.8 bits)