BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Liberibacter asiaticus str. psy62] (820 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 1697 bits (4394), Expect = 0.0, Method: Compositional matrix adjust. Identities = 820/820 (100%), Positives = 820/820 (100%) Query: 1 MSTDSIISNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQE 60 MSTDSIISNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQE Sbjct: 1 MSTDSIISNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQE 60 Query: 61 SVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD 120 SVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD Sbjct: 61 SVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD 120 Query: 121 VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG 180 VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG Sbjct: 121 VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG 180 Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV Sbjct: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240 Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF Sbjct: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI Sbjct: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK Sbjct: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA Sbjct: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS Sbjct: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL Sbjct: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE Sbjct: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP Sbjct: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL Sbjct: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI Sbjct: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 >gi|254780701|ref|YP_003065114.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Candidatus Liberibacter asiaticus str. psy62] Length = 495 Score = 171 bits (434), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 97/258 (37%), Positives = 154/258 (59%) Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 SC + I+E + K+ +K AE+E+ KS FLA +SHE+RTPL AI+GFSEVI+ Sbjct: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + GPL N Y EY I RSG +L+++N++LD+S+IE+G+ L +SL + V E Sbjct: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 I ++QL A EK I I ++ + AD + ++Q+ LN+LSNA+ FT GG++ ++ Sbjct: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 TS + ++D G G+ E+ + FGQ + + +G GLGLP+A++++ + G+ Sbjct: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455 Query: 792 FYIFSTPAKGTLIEIIFP 809 F I S +G + I P Sbjct: 456 FLIRSKLREGVEVIAILP 473 >gi|254780903|ref|YP_003065316.1| two-component sensor histidine kinase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 766 Score = 159 bits (403), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 103/267 (38%), Positives = 158/267 (59%), Gaps = 19/267 (7%) Query: 557 TMHDISEWKQ----EKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 T++D+S +Q +K +LS A K+ AE + KS+FLA++SHE+RTPL AI+G Sbjct: 504 TINDLSTSRQILERQKTELSIANAKYQVEKERAETANKTKSEFLAKMSHELRTPLNAILG 563 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSEVIK + FG LG+ +Y EYA I SG +L+++N++L++SKIE+ K+++ + L Sbjct: 564 FSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMINNILEMSKIETEKISIDKQNADLI 623 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRIL---ADLRSVKQIALNILSNAIHFTPSG 722 ++E I L+ A K I I IP L AD R +K+I ILSN+I FT + Sbjct: 624 PIINEGIRLIGSSAQSKNIKIE----KKIPSELFFNADKRIIKKILFPILSNSIKFTNNN 679 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 G+++I T+ + VI+ + DTG+G+ LEK +PF + N G GLGL ++ Sbjct: 680 GKMMIRTSKIG-QCVIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISD 738 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 A+ + + G+ I S KGT++ I P Sbjct: 739 ALTNLHGGRLKIISQEGKGTIVTICMP 765 >gi|255764476|ref|YP_003065238.2| two-component sensor histidine kinase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 792 Score = 114 bits (284), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 94/357 (26%), Positives = 174/357 (48%), Gaps = 20/357 (5%) Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 S+G+A+ +G I +N A L + E+ P T +N + + Y E DL Sbjct: 444 SEGVAVFGPDGRIKLSNPAFRSL--WKTEENRLSPGTHI--RNIAATCSRYYNESDGWDL 499 Query: 522 RQTL------EKITLGSTKEEKLLSLRII---IKKLPFSSCYSLTMHDISEWKQEKNKLS 572 + E+ +L T E LLS ++ I LP + LT ++++ + + L+ Sbjct: 500 FAAIITSFDDERKSLQGTLE--LLSDSVLEYSIIPLPNAQTM-LTFVNVTDSVRAERALT 556 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 + K K+ F+ VS+E+R+PLT IIGF++++K + G L N + +Y YI Sbjct: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISA 615 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 S ++L++VND+LD++ +++G M L++ + L++ ++E + +E I I+ Sbjct: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 + +AD + + QI ILSNA+ F+ G +I+ N + I V++ G + Sbjct: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDM 734 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F + N+ + + G GLGL + ++ ++ + G I S+ T I P Sbjct: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789 >gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid protein [Candidatus Liberibacter asiaticus str. psy62] Length = 803 Score = 59.3 bits (142), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 63/278 (22%), Positives = 119/278 (42%), Gaps = 35/278 (12%) Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE-VIKNQRFGPL 618 +I+E K + +++ +K+ + ++H+ LTAI+ S+ ++ R Sbjct: 400 EITEQKALEARMAQTQKL-----NAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDA 454 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ-L 677 +E + +R+ LV LL S+ K + ++L E + ++Q L Sbjct: 455 SFADLMEIKHNANRAAILV----RQLLAFSR----KQTMRLTVLNLTEVIGNLRMMIQKL 506 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH--FTPSGGQIIIST------ 729 + ++ + + ++ + DL +Q+ +N+ NA H G + + T Sbjct: 507 ISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPST 566 Query: 730 -THTSN-------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 HT N + V++ V DTG+GM+ +EK +PF + + GEGTGLGL + Sbjct: 567 EIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFF----TTKKVGEGTGLGLSVV 622 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 ++ + G S KGT+ I P Y H + Sbjct: 623 YGIIRQSGGYILPESEVGKGTIFRIFLPRYVQEHTQES 660 >gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 957 Score = 25.4 bits (54), Expect = 3.6, Method: Compositional matrix adjust. Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 3/78 (3%) Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN---SKESFEYLSHRNH 308 D++ ++ +E S + + TI ++ + Y +L N SK+ + L++ H Sbjct: 471 DIVCYRRFGHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWH 530 Query: 309 PSLSAYFDEGENLTPETV 326 L A + E E+ PE + Sbjct: 531 KYLEAEYKESESYCPEKL 548 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.316 0.134 0.387 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 547,032 Number of Sequences: 1233 Number of extensions: 24263 Number of successful extensions: 82 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 67 Number of HSP's gapped (non-prelim): 16 length of query: 820 length of database: 328,796 effective HSP length: 82 effective length of query: 738 effective length of database: 227,690 effective search space: 168035220 effective search space used: 168035220 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 42 (20.8 bits)