BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal
transduction histidine kinase [Candidatus Liberibacter asiaticus str.
psy62]
         (820 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 820

 Score = 1697 bits (4394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 820/820 (100%), Positives = 820/820 (100%)

Query: 1   MSTDSIISNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQE 60
           MSTDSIISNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQE
Sbjct: 1   MSTDSIISNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQE 60

Query: 61  SVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD 120
           SVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD
Sbjct: 61  SVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD 120

Query: 121 VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG 180
           VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG
Sbjct: 121 VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG 180

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
           FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV
Sbjct: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
           SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF
Sbjct: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
           EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI
Sbjct: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK
Sbjct: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
           ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA
Sbjct: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
           VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS
Sbjct: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL
Sbjct: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE
Sbjct: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
           PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP
Sbjct: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL
Sbjct: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI
Sbjct: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820


>gi|254780701|ref|YP_003065114.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 495

 Score =  171 bits (434), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 97/258 (37%), Positives = 154/258 (59%)

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
           SC +     I+E +  K+     +K AE+E+  KS FLA +SHE+RTPL AI+GFSEVI+
Sbjct: 216 SCQAEKDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIE 275

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            +  GPL N  Y EY   I RSG  +L+++N++LD+S+IE+G+  L    +SL + V E 
Sbjct: 276 LETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           I ++QL A EK I I      ++  + AD + ++Q+ LN+LSNA+ FT  GG++ ++   
Sbjct: 336 IIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGW 395

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           TS     + ++D G G+   E+   +  FGQ   + +   +G GLGLP+A++++  + G+
Sbjct: 396 TSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQ 455

Query: 792 FYIFSTPAKGTLIEIIFP 809
           F I S   +G  +  I P
Sbjct: 456 FLIRSKLREGVEVIAILP 473


>gi|254780903|ref|YP_003065316.1| two-component sensor histidine kinase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 766

 Score =  159 bits (403), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 103/267 (38%), Positives = 158/267 (59%), Gaps = 19/267 (7%)

Query: 557 TMHDISEWKQ----EKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
           T++D+S  +Q    +K +LS A       K+ AE  +  KS+FLA++SHE+RTPL AI+G
Sbjct: 504 TINDLSTSRQILERQKTELSIANAKYQVEKERAETANKTKSEFLAKMSHELRTPLNAILG 563

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           FSEVIK + FG LG+ +Y EYA  I  SG  +L+++N++L++SKIE+ K+++  +   L 
Sbjct: 564 FSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMINNILEMSKIETEKISIDKQNADLI 623

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRIL---ADLRSVKQIALNILSNAIHFTPSG 722
             ++E I L+   A  K I I       IP  L   AD R +K+I   ILSN+I FT + 
Sbjct: 624 PIINEGIRLIGSSAQSKNIKIE----KKIPSELFFNADKRIIKKILFPILSNSIKFTNNN 679

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G+++I T+    + VI+ + DTG+G+    LEK  +PF  + N       G GLGL ++ 
Sbjct: 680 GKMMIRTSKIG-QCVIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISD 738

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
           A+ + + G+  I S   KGT++ I  P
Sbjct: 739 ALTNLHGGRLKIISQEGKGTIVTICMP 765


>gi|255764476|ref|YP_003065238.2| two-component sensor histidine kinase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 792

 Score =  114 bits (284), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 174/357 (48%), Gaps = 20/357 (5%)

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           S+G+A+   +G I  +N A   L  +  E+    P T    +N  +  + Y  E    DL
Sbjct: 444 SEGVAVFGPDGRIKLSNPAFRSL--WKTEENRLSPGTHI--RNIAATCSRYYNESDGWDL 499

Query: 522 RQTL------EKITLGSTKEEKLLSLRII---IKKLPFSSCYSLTMHDISEWKQEKNKLS 572
              +      E+ +L  T E  LLS  ++   I  LP +    LT  ++++  + +  L+
Sbjct: 500 FAAIITSFDDERKSLQGTLE--LLSDSVLEYSIIPLPNAQTM-LTFVNVTDSVRAERALT 556

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
              +   K    K+ F+  VS+E+R+PLT IIGF++++K  + G L N +  +Y  YI  
Sbjct: 557 EKNEALRKADEIKNSFVQHVSYELRSPLTNIIGFTDLLKTSKLGSL-NSKQSQYVEYISA 615

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           S  ++L++VND+LD++ +++G M L++  + L++ ++E    +    +E  I I+     
Sbjct: 616 SSTILLNLVNDILDLATVDAGIMKLNYSTIVLNDLLNEVKQSIATKMHENNIRIKVISDG 675

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
            +   +AD + + QI   ILSNA+ F+  G  +I+      N + I  V++ G  +    
Sbjct: 676 KLGSFVADRQRLLQIFSKILSNAMDFSSKGSTVILKAAR-DNGDFIFSVKNNGSSIPEDM 734

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +     F  + N+ + +  G GLGL + ++ ++ + G   I S+    T I    P
Sbjct: 735 CKSVFNRF--VSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDEGVTTINCRIP 789


>gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 803

 Score = 59.3 bits (142), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 119/278 (42%), Gaps = 35/278 (12%)

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE-VIKNQRFGPL 618
           +I+E K  + +++  +K+     +        ++H+    LTAI+  S+ ++   R    
Sbjct: 400 EITEQKALEARMAQTQKL-----NAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDA 454

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ-L 677
                +E  +  +R+  LV      LL  S+    K  +    ++L E +     ++Q L
Sbjct: 455 SFADLMEIKHNANRAAILV----RQLLAFSR----KQTMRLTVLNLTEVIGNLRMMIQKL 506

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH--FTPSGGQIIIST------ 729
            +   ++ +   +  ++  +  DL   +Q+ +N+  NA H       G + + T      
Sbjct: 507 ISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPST 566

Query: 730 -THTSN-------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
             HT N       + V++ V DTG+GM+   +EK  +PF     + +  GEGTGLGL + 
Sbjct: 567 EIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFF----TTKKVGEGTGLGLSVV 622

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
             ++  + G     S   KGT+  I  P Y   H  + 
Sbjct: 623 YGIIRQSGGYILPESEVGKGTIFRIFLPRYVQEHTQES 660


>gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 957

 Score = 25.4 bits (54), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN---SKESFEYLSHRNH 308
           D++   ++     +E S  +   + TI  ++   + Y  +L  N   SK+  + L++  H
Sbjct: 471 DIVCYRRFGHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWH 530

Query: 309 PSLSAYFDEGENLTPETV 326
             L A + E E+  PE +
Sbjct: 531 KYLEAEYKESESYCPEKL 548


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.316    0.134    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,032
Number of Sequences: 1233
Number of extensions: 24263
Number of successful extensions: 82
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 67
Number of HSP's gapped (non-prelim): 16
length of query: 820
length of database: 328,796
effective HSP length: 82
effective length of query: 738
effective length of database: 227,690
effective search space: 168035220
effective search space used: 168035220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 42 (20.8 bits)