HHsearch alignment for GI: 254780414 and conserved domain: CHL00197
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional.
Probab=99.97 E-value=9.6e-31 Score=239.95 Aligned_cols=174 Identities=25% Similarity=0.432 Sum_probs=135.1
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCC-CCCCCCHHHHH-CCCCEEE
Q ss_conf 886999988970578899888865940698528989889972399799998538899999-99753768980-8998899
Q gi|254780414|r 7 SSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDI-DSPQIPKEILE-SNIPLLG 84 (520)
Q Consensus 7 ~~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~-~ap~~~~~I~~-~~iPILG 84 (520)
T Consensus 194 ~~~VvviD~GiK~n--ILr~L~~~g~~v~VvP~~~~~~~I~~~~PDGIfLSNGPGDP~~~~~~i~~i~~li~~~~iPifG 271 (383)
T CHL00197 194 PLRIIVIDFGVKYN--ILRRLKSFGCEITIVPATSTYQDIMAYQPDGILLSNGPGDPSTVHYGIKTVKKLIKKANIPIFG 271 (383)
T ss_pred CCEEEEEECCCCHH--HHHHHHHCCCEEEEECCCCCCCHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 74599996777188--9999997899899989998511342568888997899999789899999999999648997899
Q ss_pred ECHHHHHHHHHCCCEEEECCCCCCCE-EEEEECCCCCCCCCCCCCCCCEEEEE---ECCCHH--HCCCCC-CCEEECCC-
Q ss_conf 77899998997096999869866103-66752388622278726655336860---022011--012444-21123239-
Q gi|254780414|r 85 ICYGQQIMCQSLGGKTKNSQSREFGR-AFIEIKKNCSLLKGMWEKGSKQQVWM---SHGDQV--EHIPEG-FEVIASSD- 156 (520)
Q Consensus 85 ICyG~QlLa~~~GG~V~~~~~~EyG~-~~I~i~~~~~lf~gl~~~~~~~~Vwm---SH~D~V--~~lP~g-f~viA~S~- 156 (520)
T Consensus 272 ICLGHQlLalA~GakT~KmkfGHrG~NhPV~~---------------t~kv~ITSQNHGyaVd~~sl~~~~~~vt~~nln 336 (383)
T CHL00197 272 ICMGHQILSLALEAKTFKLKFGHRGLNHPSGL---------------NQQVEITSQNHGFAVNAESLAKNKVYVTHFNLN 336 (383)
T ss_pred ECHHHHHHHHHCCCEEEECCCCCCCCCCCCCC---------------CCCEEEEECCCCEEECCCCCCCCCCEEEEECCC
T ss_conf 55889999997398375668887798866015---------------875799627876176744478873189999388
Q ss_pred CCCEEEEEECCCCEEEEEEEEHHHCCCH-HHHHHHHHHHHHC
Q ss_conf 8317889863500112465212221520-2577998755010
Q gi|254780414|r 157 STPFAFIADEKRKYYAVQFHPEVVHTVG-GSQLIDNFVHHVA 197 (520)
Q Consensus 157 ~~~iaai~~~~~~iyGVQFHPEV~hT~~-G~~iL~NFl~~Ic 197 (520)
T Consensus 337 D~tvEG~~~~~~p~fsvQfHPEa~pGP~Ds~~lF~~F~~~~~ 378 (383)
T CHL00197 337 DGTVAGISHSPKPYFSVQYHPEASPGPHDADYLFEYFIEIMK 378 (383)
T ss_pred CCCCCCEEECCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 896148698899878877488989898730889999999999