HHsearch alignment for GI: 254780414 and conserved domain: COG0693
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only].
Probab=90.53 E-value=0.21 Score=30.31 Aligned_cols=56 Identities=16% Similarity=0.329 Sum_probs=38.6
Q ss_pred CHHHHHHCCCCEEEECCC-CCCCCCCCCC---CCCHHHHHCCCCEEEECHHHHHHHHHCC
Q ss_conf 988997239979999853-8899999997---5376898089988997789999899709
Q gi|254780414|r 42 ALDYFKEQNPQAIILSGS-PASSLDIDSP---QIPKEILESNIPLLGICYGQQIMCQSLG 97 (520)
Q Consensus 42 ~~e~i~~~~p~GIILSGG-P~SV~d~~ap---~~~~~I~~~~iPILGICyG~QlLa~~~G 97 (520)
T Consensus 58 ~~~~~~~~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag~ 117 (188)
T COG0693 58 AFDDADAADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAGL 117 (188)
T ss_pred HCCCCCCCCCCEEEECCCCCCHHHCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCC
T ss_conf 116578135989998899752322135178999999999769989998468899874768