HHsearch alignment for GI: 254780414 and conserved domain: COG2117
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis].
Probab=91.94 E-value=0.23 Score=29.97 Aligned_cols=146 Identities=21% Similarity=0.316 Sum_probs=83.4
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCC-CCCHHHH
Q ss_conf 036640564047799999986223656999973895515627899998862369857997588999999668-9888999
Q gi|254780414|r 224 RVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKLKN-IVDPETK 302 (520)
Q Consensus 224 kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~g-v~DPE~K 302 (520)
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~kl-gyev~LVTvnFGv~d~~k~A~--~tA-~~lgF~h~vl~Ldr~ile~A~em~iedg~P 77 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDKL-GYEVELVTVNFGVLDSWKYAR--ETA-AILGFPHEVLQLDREILEDAVEMIIEDGYP 77 (198)
T ss_pred CEEEEECCCCCHHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHH--HHH-HHHCCCCCEECCCHHHHHHHHHHHHHCCCC
T ss_conf 5689844897105899999871-787179998733466406689--999-982997000016889999999999853898
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 98875658999999997439970998646220245420246777630344302320113203202237898738999999
Q gi|254780414|r 303 RKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKELFKDEVRLL 382 (520)
Q Consensus 303 RkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liEPl~~l~KdEVR~l 382 (520)
T Consensus 78 ~~aIq~iH~~alE~~A~r--~~~~iaDGTRRDDrvP~ls~-----~~~q------SLEdR~nv~Yi~PL~G~G~kti~~L 144 (198)
T COG2117 78 RNAIQYIHEMALEALASR--EVDRIADGTRRDDRVPKLSR-----SEAQ------SLEDRLNVQYIRPLLGLGYKTIRRL 144 (198)
T ss_pred CHHHHHHHHHHHHHHHHH--HHHHHCCCCCCCCCCCCCCH-----HHHH------HHHHHCCCEEECCCCCCCHHHHHHH
T ss_conf 508899999999999877--78887578744566764249-----8875------1887518645530334467899999
Q ss_pred HHHH
Q ss_conf 9981
Q gi|254780414|r 383 GKEL 386 (520)
Q Consensus 383 g~~L 386 (520)
T Consensus 145 v~~~ 148 (198)
T COG2117 145 VSAI 148 (198)
T ss_pred HHHH
T ss_conf 8877