HHsearch alignment for GI: 254780414 and conserved domain: COG2117

>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis].
Probab=91.94  E-value=0.23  Score=29.97  Aligned_cols=146  Identities=21%  Similarity=0.316  Sum_probs=83.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCC-CCCHHHH
Q ss_conf             036640564047799999986223656999973895515627899998862369857997588999999668-9888999
Q gi|254780414|r  224 RVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKLKN-IVDPETK  302 (520)
Q Consensus       224 kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~g-v~DPE~K  302 (520)
T Consensus         2 ~v~vLfSGGKDSSLaA~iL~kl-gyev~LVTvnFGv~d~~k~A~--~tA-~~lgF~h~vl~Ldr~ile~A~em~iedg~P   77 (198)
T COG2117           2 DVYVLFSGGKDSSLAALILDKL-GYEVELVTVNFGVLDSWKYAR--ETA-AILGFPHEVLQLDREILEDAVEMIIEDGYP   77 (198)
T ss_pred             CEEEEECCCCCHHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHH--HHH-HHHCCCCCEECCCHHHHHHHHHHHHHCCCC
T ss_conf             5689844897105899999871-787179998733466406689--999-982997000016889999999999853898


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             98875658999999997439970998646220245420246777630344302320113203202237898738999999
Q gi|254780414|r  303 RKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKELFKDEVRLL  382 (520)
Q Consensus       303 RkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liEPl~~l~KdEVR~l  382 (520)
T Consensus        78 ~~aIq~iH~~alE~~A~r--~~~~iaDGTRRDDrvP~ls~-----~~~q------SLEdR~nv~Yi~PL~G~G~kti~~L  144 (198)
T COG2117          78 RNAIQYIHEMALEALASR--EVDRIADGTRRDDRVPKLSR-----SEAQ------SLEDRLNVQYIRPLLGLGYKTIRRL  144 (198)
T ss_pred             CHHHHHHHHHHHHHHHHH--HHHHHCCCCCCCCCCCCCCH-----HHHH------HHHHHCCCEEECCCCCCCHHHHHHH
T ss_conf             508899999999999877--78887578744566764249-----8875------1887518645530334467899999


Q ss_pred             HHHH
Q ss_conf             9981
Q gi|254780414|r  383 GKEL  386 (520)
Q Consensus       383 g~~L  386 (520)
T Consensus       145 v~~~  148 (198)
T COG2117         145 VSAI  148 (198)
T ss_pred             HHHH
T ss_conf             8877