HHsearch alignment for GI: 254780414 and conserved domain: TIGR00552

>TIGR00552 nadE NAD+ synthetase; InterPro: IPR003694 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology .; GO: 0003952 NAD+ synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0009435 NAD biosynthetic process.
Probab=98.95  E-value=2.7e-08  Score=79.51  Aligned_cols=170  Identities=25%  Similarity=0.286  Sum_probs=113.6

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCHH--------HHHHHHHHHHCC-CCEEEEEECCCCC-CCCCHHHHHHHHHHCCCCCEE
Q ss_conf             999997650444036640564047--------799999986223-6569999738955-156278999988623698579
Q gi|254780414|r  212 IVSRIKEQVGNERVICAVSGGVDS--------TVAAFLIYEAIG-INLTCVLVDHGFM-RKNEVENIISLFKGYPNFPLR  281 (520)
Q Consensus       212 ~i~~Ir~~vg~~kVi~~lSGGVDS--------tV~A~Ll~kAig-~~l~~vfVD~Gll-RknE~~~v~~~~~~~~~~~l~  281 (520)
T Consensus        16 ~~~~~~~~~~~~g~v~GlsGG~ds~l~g~l~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~a~~~~~~-~~~~~~   94 (286)
T TIGR00552        16 LRGYVKKSPGAKGVVLGLSGGVDSTLAGKLCQAVVAALCVEALGKEQNHALLLPHSNTTPEDDVQDALALAEP-LGINYK   94 (286)
T ss_pred             HHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHEEEEECCCCCCCHHHHHHHHHHHHH-CCCCCE
T ss_conf             8888763257650467304762035677899999999998504611420332146678841217999998874-054421


Q ss_pred             EEEHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf             9758899999966--898889999887565899999999743-9970998646220245420246777630344302320
Q gi|254780414|r  282 VVDASERFIRKLK--NIVDPETKRKVIGQLFIEVFEEEAKKI-GGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGG  358 (520)
Q Consensus       282 ~vda~~~Fl~~L~--gv~DPE~KRkiIG~~Fi~vf~~~a~~~-~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgg  358 (520)
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gn~~~r~r~~~~y~~a~~~~~lv~gt~n~--~e~~~G-------y~t~~Gdg~  165 (286)
T TIGR00552        95 TIDIAPIAASFQAQTETGDPLADFLAEGNLKARLRMALLYAHANKHNLLVLGTGNK--SELLLG-------YFTKYGDGG  165 (286)
T ss_pred             ECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCH--HHHHHH-------HHHHCCCCC
T ss_conf             11304677887764203443331023322247889999988731016356404613--445432-------001014420


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHCC-----CHHHHCCCCC
Q ss_conf             113203202237898738999999998199-----9889426888
Q gi|254780414|r  359 LPEHMDMKLVEPLKELFKDEVRLLGKELRL-----PDSFVERHPC  398 (520)
Q Consensus       359 lp~~~~~~liEPl~~l~KdEVR~lg~~Lgl-----p~~~~~RhPF  398 (520)
T Consensus       166 -------~d~~p~~~l~k~~~~~l~~~l~~~~~~~P~~~~~k~P~  203 (286)
T TIGR00552       166 -------CDILPLGGLFKTEVYELAKRLGVEQTIIPEEIIEKPPT  203 (286)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCC
T ss_conf             -------00345532237889999998175310146667337887