HHsearch alignment for GI: 254780414 and conserved domain: TIGR00552
>TIGR00552 nadE NAD+ synthetase; InterPro: IPR003694 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology .; GO: 0003952 NAD+ synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0009435 NAD biosynthetic process.
Probab=98.95 E-value=2.7e-08 Score=79.51 Aligned_cols=170 Identities=25% Similarity=0.286 Sum_probs=113.6
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHH--------HHHHHHHHHHCC-CCEEEEEECCCCC-CCCCHHHHHHHHHHCCCCCEE
Q ss_conf 999997650444036640564047--------799999986223-6569999738955-156278999988623698579
Q gi|254780414|r 212 IVSRIKEQVGNERVICAVSGGVDS--------TVAAFLIYEAIG-INLTCVLVDHGFM-RKNEVENIISLFKGYPNFPLR 281 (520)
Q Consensus 212 ~i~~Ir~~vg~~kVi~~lSGGVDS--------tV~A~Ll~kAig-~~l~~vfVD~Gll-RknE~~~v~~~~~~~~~~~l~ 281 (520)
T Consensus 16 ~~~~~~~~~~~~g~v~GlsGG~ds~l~g~l~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~a~~~~~~-~~~~~~ 94 (286)
T TIGR00552 16 LRGYVKKSPGAKGVVLGLSGGVDSTLAGKLCQAVVAALCVEALGKEQNHALLLPHSNTTPEDDVQDALALAEP-LGINYK 94 (286)
T ss_pred HHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHEEEEECCCCCCCHHHHHHHHHHHHH-CCCCCE
T ss_conf 8888763257650467304762035677899999999998504611420332146678841217999998874-054421
Q ss_pred EEEHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 9758899999966--898889999887565899999999743-9970998646220245420246777630344302320
Q gi|254780414|r 282 VVDASERFIRKLK--NIVDPETKRKVIGQLFIEVFEEEAKKI-GGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGG 358 (520)
Q Consensus 282 ~vda~~~Fl~~L~--gv~DPE~KRkiIG~~Fi~vf~~~a~~~-~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgg 358 (520)
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gn~~~r~r~~~~y~~a~~~~~lv~gt~n~--~e~~~G-------y~t~~Gdg~ 165 (286)
T TIGR00552 95 TIDIAPIAASFQAQTETGDPLADFLAEGNLKARLRMALLYAHANKHNLLVLGTGNK--SELLLG-------YFTKYGDGG 165 (286)
T ss_pred ECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCH--HHHHHH-------HHHHCCCCC
T ss_conf 11304677887764203443331023322247889999988731016356404613--445432-------001014420
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHCC-----CHHHHCCCCC
Q ss_conf 113203202237898738999999998199-----9889426888
Q gi|254780414|r 359 LPEHMDMKLVEPLKELFKDEVRLLGKELRL-----PDSFVERHPC 398 (520)
Q Consensus 359 lp~~~~~~liEPl~~l~KdEVR~lg~~Lgl-----p~~~~~RhPF 398 (520)
T Consensus 166 -------~d~~p~~~l~k~~~~~l~~~l~~~~~~~P~~~~~k~P~ 203 (286)
T TIGR00552 166 -------CDILPLGGLFKTEVYELAKRLGVEQTIIPEEIIEKPPT 203 (286)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCC
T ss_conf -------00345532237889999998175310146667337887