HHsearch alignment for GI: 254780414 and conserved domain: TIGR02039

>TIGR02039 CysD sulfate adenylyltransferase, small subunit; InterPro: IPR011784 Metabolic assimilation of sulphur from inorganic sulphate, requires sulphate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulphates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through reaction of sulphate with ATP by sulphate adenylyltransferase (ATP sulphurylase) to produce 5'-phosphosulphate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulphate (PAPS). In Escherichia coli, ATP sulphurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulphur-containing amino acids. Homologous to this E. coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulphurase and APS kinase activity, yet are involved in Nod factor sulphation, and sulphation of other macromolecules.; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0019421 sulfate reduction APS pathway.
Probab=94.59  E-value=0.32  Score=28.99  Aligned_cols=260  Identities=17%  Similarity=0.174  Sum_probs=140.2

Q ss_pred             HHHHHHHHHHHHHHCC-CCEEEEECCCCHHHHHHHHHHHHCC--C-CEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEE
Q ss_conf             7899999999765044-4036640564047799999986223--6-5699997389551562789999886236985799
Q gi|254780414|r  207 SYHKEIVSRIKEQVGN-ERVICAVSGGVDSTVAAFLIYEAIG--I-NLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRV  282 (520)
Q Consensus       207 ~~~~~~i~~Ir~~vg~-~kVi~~lSGGVDStV~A~Ll~kAig--~-~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~  282 (520)
T Consensus         3 ~LE~EaI~i~REvaa~F~~PV~LyS~GKDS~VlLHLA~KaF~Pg~~PFplLHvDTgw-~f~E~~~fRD~~~~~~~~~L~v   81 (295)
T TIGR02039         3 LLEAEAIHIIREVAAEFERPVLLYSIGKDSSVLLHLARKAFYPGRLPFPLLHVDTGW-KFREMIAFRDELVAKYGLELIV   81 (295)
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCEEEEECCC-CHHHHHHHHHHHHHHHCCEEEE
T ss_conf             015788999998763037976898657347999998764058888797357740663-2789999999999870976888


Q ss_pred             EEHHHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCC--H
Q ss_conf             7588999999668988899-998875658999999997439970998646220245420246777630344302320--1
Q gi|254780414|r  283 VDASERFIRKLKNIVDPET-KRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGG--L  359 (520)
Q Consensus       283 vda~~~Fl~~L~gv~DPE~-KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgg--l  359 (520)
T Consensus        82 ~~~~~~~~~g~~P~~~~~~~~~~~~~T~~---L~~Al~~~-~FD-Aa~gGARRdEE~sRa-----KERifS~R~~~h~WD  151 (295)
T TIGR02039        82 HSNEEGIAEGINPFTEGSALHTDIMKTEA---LRQALDKN-QFD-AAFGGARRDEEKSRA-----KERIFSFRDAFHQWD  151 (295)
T ss_pred             EECHHHHHHCCCCCHHHHHHHHHHHHHHH---HHHHHHHC-CCC-EEECCCCCHHHHCCC-----CCCEEHHCCCCCCCC
T ss_conf             50502354156620101245555563189---99998733-886-563166313443012-----010001003457888


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCH---
Q ss_conf             13203202237898738999999998199988942688898311122100036789999999999999999864653---
Q gi|254780414|r  360 PEHMDMKLVEPLKELFKDEVRLLGKELRLPDSFVERHPCPGPGLAIRCIGEITEERINILRESDAIYREEIHKAGIY---  436 (520)
Q Consensus       360 p~~~~~~liEPl~~l~KdEVR~lg~~Lglp~~~~~RhPFPGPGLaiRi~g~vt~e~~~i~r~ad~i~~~~l~~~~ly---  436 (520)
T Consensus       152 Pk~QR------------------------PELW~~YNg~~~~GE~~RvFPLSNwTE~DiW~---Y~~~~~i~~~~lYfA~  204 (295)
T TIGR02039       152 PKKQR------------------------PELWNLYNGRISKGESVRVFPLSNWTELDIWR---YIAAENIEIVPLYFAA  204 (295)
T ss_pred             CCCCC------------------------HHHHHHCCCCCCCCCEEEEECCCCCCHHHHHH---HHHHCCCCCCEEECCC
T ss_conf             51257------------------------37787505234688726872266650445898---8743465422011024


Q ss_pred             -HHHHHHHEE--ECCCCCCCCCCCCCCCCCEEEEEEE---ECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             -332201045--5686324215998541447999632---168775587101898999987557504879812578
Q gi|254780414|r  437 -RKIWQAFTV--LLPVQTVGVMGDERTYEYVCSLRAV---TSIDGMTADFYHHDMNFLSQVAIRIVNEVKGINRVV  506 (520)
Q Consensus       437 -~~~~q~~av--llp~~svGv~GD~R~y~~~~~lr~v---~s~d~mta~~~~~~~~~l~~is~~i~n~v~~v~rV~  506 (520)
T Consensus       205 ~RpV~~R~g~l~~~~D~~~~~~~~E~~~~~~vrfRTlGc~~~tga~~S~A~~~-~~ii~E~~~~~~sE-Rg~~R~~  278 (295)
T TIGR02039       205 KRPVVERDGMLIMVDDERLELEPGEVVKERMVRFRTLGCYPLTGAIESDAATV-EEIIAEVAVARTSE-RGQGRAI  278 (295)
T ss_pred             CCCEEECCCEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHH-HHHHHHHHHHHHCC-CCCCCCC
T ss_conf             68624107448886065246677751000045555405756454312234107-99999988753202-5452332