HHsearch alignment for GI: 254780414 and conserved domain: cd03130
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=97.59 E-value=0.0013 Score=46.11 Aligned_cols=162 Identities=17% Similarity=0.184 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCC---CCCCC---HHHHHCCCCEEEECHHHHH
Q ss_conf 05788998888659406985289898899723997999985388999999---97537---6898089988997789999
Q gi|254780414|r 18 QFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDID---SPQIP---KEILESNIPLLGICYGQQI 91 (520)
Q Consensus 18 QytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~---ap~~~---~~I~~~~iPILGICyG~Ql 91 (520)
T Consensus 12 yY~enl-~~L~~~Ga--elv~FSPl~d~-~lP~~d~lylgGGyPE~~a~~Ls~N~~~~~~ir~~~~~G~PiyAECGGlMy 87 (198)
T cd03130 12 YYPENL-ELLEAAGA--ELVPFSPLKDE-ELPDADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGLMY 87 (198)
T ss_pred ECHHHH-HHHHHCCC--EEEEECCCCCC-CCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHH
T ss_conf 579999-99998899--78987776788-899876898279987588999976799999999999849977998204888
Q ss_pred HHHHCCC--------------EEEECCCCCCCEEEEEECCCCCCCCC-CCCCCCCEEEEEECCCHHHCCCC---CCCEEE
Q ss_conf 8997096--------------99986986610366752388622278-72665533686002201101244---421123
Q gi|254780414|r 92 MCQSLGG--------------KTKNSQSREFGRAFIEIKKNCSLLKG-MWEKGSKQQVWMSHGDQVEHIPE---GFEVIA 153 (520)
Q Consensus 92 La~~~GG--------------~V~~~~~~EyG~~~I~i~~~~~lf~g-l~~~~~~~~VwmSH~D~V~~lP~---gf~viA 153 (520)
T Consensus 88 L~~~i~~~~G~~~~M~Gllp~~~~m~~rl~lGY~~~~~~~~~~~~~~g~~lrGHEF-----HyS~~~~~~~~~~~~~~~~ 162 (198)
T cd03130 88 LGESLDDEEGQSYPMAGVLPGDARMTKRLGLGYREAEALGDTLLGKKGTTLRGHEF-----HYSRLEPPPEPDFAATVRR 162 (198)
T ss_pred HHHHCCCCCCCEEEEEEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEEE-----EEEEEECCCCCCCEEEEEE
T ss_conf 74220558998975021151688977763256389998278622379968887775-----5104031898752079981
Q ss_pred CC-CCCCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHH
Q ss_conf 23-98317889863500112465212221520257799875
Q gi|254780414|r 154 SS-DSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193 (520)
Q Consensus 154 ~S-~~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl 193 (520)
T Consensus 163 ~~g~~~~~~G~~~--~n~~asY~H~h~~---~~p~~~~~fv 198 (198)
T cd03130 163 GRGIDGGEDGYVY--GNVLASYLHLHWA---SNPDLAERFV 198 (198)
T ss_pred CCCCCCCCCEEEE--CCEEEEEEEECCC---CCHHHHHHHC
T ss_conf 5699888278998--9999998786787---3957999659