HHsearch alignment for GI: 254780416 and conserved domain: TIGR00403

>TIGR00403 ndhI NADH-plastoquinone oxidoreductase, I subunit; InterPro: IPR004497 NADH-plastoquinone oxidoreductase subunit I (1.6.5.3 from EC) catalyses the conversion of plastoquinone and NADH to plastoquinol and NAD(+). The enzyme binds two 4FE-4S clusters at iron-sulphur centres which are similar to those of the bacterial-type 4FE-4S ferredoxins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0006118 electron transport.
Probab=90.10  E-value=0.095  Score=28.96  Aligned_cols=49  Identities=24%  Similarity=0.424  Sum_probs=36.6

Q ss_pred             CCEEEEEHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             7447994013025771587874200256676346899999999998688
Q gi|254780416|r   30 ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWP   78 (113)
Q Consensus        30 ~~~~~id~~~Ci~Cg~C~~~CP~~AI~~d~~~~~~~~~~~n~~~a~~~p   78 (113)
T Consensus        55 rGrihfefdkCiaCevCvrvCPi~lP~vdW~~~k~~k~k~l~~ysidfG  103 (187)
T TIGR00403        55 RGRIHFEFDKCIACEVCVRVCPINLPVVDWEFEKAIKKKQLKNYSIDFG  103 (187)
T ss_pred             CCEEEEEECCEEEEEEEEEEECCCCCEECHHHHHHHHHHHHHHHHHHCC
T ss_conf             1105653133344234567621436312045554677767753000000