HHsearch alignment for GI: 254780416 and conserved domain: TIGR00403
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase, I subunit; InterPro: IPR004497 NADH-plastoquinone oxidoreductase subunit I (1.6.5.3 from EC) catalyses the conversion of plastoquinone and NADH to plastoquinol and NAD(+). The enzyme binds two 4FE-4S clusters at iron-sulphur centres which are similar to those of the bacterial-type 4FE-4S ferredoxins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0006118 electron transport.
Probab=90.10 E-value=0.095 Score=28.96 Aligned_cols=49 Identities=24% Similarity=0.424 Sum_probs=36.6
Q ss_pred CCEEEEEHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 7447994013025771587874200256676346899999999998688
Q gi|254780416|r 30 ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWP 78 (113)
Q Consensus 30 ~~~~~id~~~Ci~Cg~C~~~CP~~AI~~d~~~~~~~~~~~n~~~a~~~p 78 (113)
T Consensus 55 rGrihfefdkCiaCevCvrvCPi~lP~vdW~~~k~~k~k~l~~ysidfG 103 (187)
T TIGR00403 55 RGRIHFEFDKCIACEVCVRVCPINLPVVDWEFEKAIKKKQLKNYSIDFG 103 (187)
T ss_pred CCEEEEEECCEEEEEEEEEEECCCCCEECHHHHHHHHHHHHHHHHHHCC
T ss_conf 1105653133344234567621436312045554677767753000000