HHsearch alignment for GI: 254780416 and conserved domain: TIGR01582
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit; InterPro: IPR006470 The sequences in this group represent the beta subunit of the gamma-proteobacterial formate dehydrogenase. This subunit contains four 4Fe-4S clusters and is involved in transmitting electrons from the alpha subunit (IPR006443 from INTERPRO) at the periplasmic space to the gamma subunit which spans the cytoplasmic membrane . In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within this group. This appears to be the case for the alpha, gamma and epsilon (accessory protein IPR006452 from INTERPRO) chains as well. ; GO: 0008863 formate dehydrogenase activity, 0045333 cellular respiration, 0016021 integral to membrane.
Probab=97.76 E-value=2.6e-05 Score=48.14 Aligned_cols=77 Identities=21% Similarity=0.383 Sum_probs=53.3
Q ss_pred EECHHCCCCCCCCHHHHCCCCCCCCC--CCEEEEEHHHCCCC---------CHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 74722089799752674777431146--74479940130257---------71587874200256676346899999999
Q gi|254780416|r 4 VVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDC---------GVCEPECPVDAIKPDTEPGLELWLKINSE 72 (113)
Q Consensus 4 vv~~~C~~C~~~~Cv~~CP~~ai~~~--~~~~~id~~~Ci~C---------g~C~~~CP~~AI~~d~~~~~~~~~~~n~~ 72 (113)
T Consensus 131 F~h~kCIGCgy--Ci~GCPFnIPR~~k~dnr~y----KCtlC~DRVsvG~ePACvKtCPT~ai~FG~KEdM~~~a~~~va 204 (293)
T TIGR01582 131 FDHEKCIGCGY--CIVGCPFNIPRIDKVDNRAY----KCTLCIDRVSVGQEPACVKTCPTNAISFGFKEDMKERAEKRVA 204 (293)
T ss_pred CCCCCEECCCC--CCCCCCCCCCCCCCCCCCCE----EECCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 11586000673--02587888888874457511----1045400001378965001277643115875789999878888
Q ss_pred H--HHHCCCCCCCCCC
Q ss_conf 9--9868872215687
Q gi|254780416|r 73 Y--ATQWPNITTKKES 86 (113)
Q Consensus 73 ~--a~~~p~I~~k~~p 86 (113)
T Consensus 205 dLK~RGY~NAgLYDPP 220 (293)
T TIGR01582 205 DLKSRGYENAGLYDPP 220 (293)
T ss_pred HHHHCCCCCCCCCCCC
T ss_conf 8763488888752813