HHsearch alignment for GI: 254780416 and conserved domain: TIGR01945
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit; InterPro: IPR010208 The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation . A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized . This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase (IPR003667 from INTERPRO), but is distinct. This entry describes the C subunit.; GO: 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport, 0016020 membrane.
Probab=98.40 E-value=2.1e-08 Score=64.89 Aligned_cols=47 Identities=32% Similarity=0.862 Sum_probs=36.9
Q ss_pred ECHHCCCCCCCCHHHHCCCCCC---------CCC-CCEEEEEHHHCCCCCHHHHHHHHH
Q ss_conf 4722089799752674777431---------146-744799401302577158787420
Q gi|254780416|r 5 VTENCILCKHTDCVEVCPVDCF---------YEG-ENFLAIHPDECIDCGVCEPECPVD 53 (113)
Q Consensus 5 v~~~C~~C~~~~Cv~~CP~~ai---------~~~-~~~~~id~~~Ci~Cg~C~~~CP~~ 53 (113)
T Consensus 370 ~~~~CIRC--g~Cv~~CPm~L~P~~L~~~A~~~~~d~~~~~~L~DCIECG~C~Y~CPs~ 426 (444)
T TIGR01945 370 PEKPCIRC--GKCVNVCPMGLLPQQLNWLAKADEFDEAAEHNLMDCIECGSCSYVCPSN 426 (444)
T ss_pred CCCCCCCH--HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
T ss_conf 66788440--0101556744227999987531016889963881466125665428775