HHsearch alignment for GI: 254780416 and conserved domain: TIGR01945

>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit; InterPro: IPR010208 The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation . A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized . This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase (IPR003667 from INTERPRO), but is distinct. This entry describes the C subunit.; GO: 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport, 0016020 membrane.
Probab=98.40  E-value=2.1e-08  Score=64.89  Aligned_cols=47  Identities=32%  Similarity=0.862  Sum_probs=36.9

Q ss_pred             ECHHCCCCCCCCHHHHCCCCCC---------CCC-CCEEEEEHHHCCCCCHHHHHHHHH
Q ss_conf             4722089799752674777431---------146-744799401302577158787420
Q gi|254780416|r    5 VTENCILCKHTDCVEVCPVDCF---------YEG-ENFLAIHPDECIDCGVCEPECPVD   53 (113)
Q Consensus         5 v~~~C~~C~~~~Cv~~CP~~ai---------~~~-~~~~~id~~~Ci~Cg~C~~~CP~~   53 (113)
T Consensus       370 ~~~~CIRC--g~Cv~~CPm~L~P~~L~~~A~~~~~d~~~~~~L~DCIECG~C~Y~CPs~  426 (444)
T TIGR01945       370 PEKPCIRC--GKCVNVCPMGLLPQQLNWLAKADEFDEAAEHNLMDCIECGSCSYVCPSN  426 (444)
T ss_pred             CCCCCCCH--HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
T ss_conf             66788440--0101556744227999987531016889963881466125665428775