HHsearch alignment for GI: 254780416 and conserved domain: TIGR02936

>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific; InterPro: IPR014283 This entry consists of ferredoxins which are encoded in the nitrogen fixation regions of many nitrogen-fixing bacteria. The charcterised protein from Rhodobacter capsulatus (Rhodopseudomonas capsulata) is homodimeric and contains two [4Fe-4S] clusters bound per monomer. Although nif-specific, these prtoeins are not universal in nitrogen-fixers as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin. .
Probab=98.78  E-value=1.2e-09  Score=71.57  Aligned_cols=52  Identities=31%  Similarity=0.761  Sum_probs=41.5

Q ss_pred             EEECHHCCCCCCCCHHHHCCCCCCCCCC-----------------------C--EEEEEHHHCCCCCHHHHHHHHHHCC
Q ss_conf             7747220897997526747774311467-----------------------4--4799401302577158787420025
Q gi|254780416|r    3 YVVTENCILCKHTDCVEVCPVDCFYEGE-----------------------N--FLAIHPDECIDCGVCEPECPVDAIK   56 (113)
Q Consensus         3 yvv~~~C~~C~~~~Cv~~CP~~ai~~~~-----------------------~--~~~id~~~Ci~Cg~C~~~CP~~AI~   56 (113)
T Consensus        17 ~ID~~kCIGC--GRCfKVCgr~Vl~L~G~~EeGE~V~~~~de~d~dDdE~~rkvM~~~~~~~CIGC~AC~rVCPk~CqT   93 (96)
T TIGR02936        17 SIDQEKCIGC--GRCFKVCGRDVLTLKGINEEGELVDPSDDEEDDDDDEIERKVMVLANPGNCIGCGACARVCPKKCQT   93 (96)
T ss_pred             HCCHHCCCCC--CCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf             1143107545--4631417867642221246785763888873346887344277742877850423477056886310