HHsearch alignment for GI: 254780416 and conserved domain: TIGR02936
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific; InterPro: IPR014283 This entry consists of ferredoxins which are encoded in the nitrogen fixation regions of many nitrogen-fixing bacteria. The charcterised protein from Rhodobacter capsulatus (Rhodopseudomonas capsulata) is homodimeric and contains two [4Fe-4S] clusters bound per monomer. Although nif-specific, these prtoeins are not universal in nitrogen-fixers as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin. .
Probab=98.78 E-value=1.2e-09 Score=71.57 Aligned_cols=52 Identities=31% Similarity=0.761 Sum_probs=41.5
Q ss_pred EEECHHCCCCCCCCHHHHCCCCCCCCCC-----------------------C--EEEEEHHHCCCCCHHHHHHHHHHCC
Q ss_conf 7747220897997526747774311467-----------------------4--4799401302577158787420025
Q gi|254780416|r 3 YVVTENCILCKHTDCVEVCPVDCFYEGE-----------------------N--FLAIHPDECIDCGVCEPECPVDAIK 56 (113)
Q Consensus 3 yvv~~~C~~C~~~~Cv~~CP~~ai~~~~-----------------------~--~~~id~~~Ci~Cg~C~~~CP~~AI~ 56 (113)
T Consensus 17 ~ID~~kCIGC--GRCfKVCgr~Vl~L~G~~EeGE~V~~~~de~d~dDdE~~rkvM~~~~~~~CIGC~AC~rVCPk~CqT 93 (96)
T TIGR02936 17 SIDQEKCIGC--GRCFKVCGRDVLTLKGINEEGELVDPSDDEEDDDDDEIERKVMVLANPGNCIGCGACARVCPKKCQT 93 (96)
T ss_pred HCCHHCCCCC--CCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1143107545--4631417867642221246785763888873346887344277742877850423477056886310