HHsearch alignment for GI: 254780416 and conserved domain: TIGR03294

>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.

Probab=99.10  E-value=2.1e-11  Score=81.03  Aligned_cols=48  Identities=29%  Similarity=0.760  Sum_probs=44.7

Q ss_pred             EECHHCCCCCCCCHHHHCCCCCCCCCCCEEEEEHHHCCCCCHHHHHHHHH
Q ss_conf             74722089799752674777431146744799401302577158787420
Q gi|254780416|r    4 VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD   53 (113)
Q Consensus         4 vv~~~C~~C~~~~Cv~~CP~~ai~~~~~~~~id~~~Ci~Cg~C~~~CP~~   53 (113)
T Consensus       171 in~~LC~GC--g~Ca~~Cp~~AI~~~~gkp~i~~~~Ci~CG~C~~~CPr~  218 (228)
T TIGR03294       171 VNQGLCMGC--GTCAAACPTRAIEMEDGRPNVNRDRCIKCGACYVQCPRA  218 (228)
T ss_pred             CCCCCCCCC--HHHHHHCCCCCCEEECCCEEECHHHCCCCCCCCCCCCCC
T ss_conf             463216781--577854885762565383677632277677441219764