RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780416|ref|YP_003064829.1| putative ferredoxin protein
[Candidatus Liberibacter asiaticus str. psy62]
         (113 letters)



>gnl|CDD|152388 pfam11953, DUF3470, Domain of unknown function (DUF3470).  This
           presumed domain is functionally uncharacterized. This
           domain is found in bacteria. This domain is about 50
           amino acids in length. This domain is found associated
           with pfam00037. This domain has a single completely
           conserved residue N that may be functionally important.
          Length = 49

 Score = 64.5 bits (158), Expect = 5e-12
 Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 58  DTEPGLEL-WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
           D  PG +  ++++N+E A +WPNIT KK+ LP A + DGV  K E Y S 
Sbjct: 1   DDLPGDQEKFIELNAELAKKWPNITEKKDPLPDAEEWDGVPDKLE-YLSR 49


>gnl|CDD|162616 TIGR01944, rnfB, electron transport complex, RnfABCDGE type, B
           subunit.  The six subunit complex RnfABCDGE in
           Rhodobacter capsulatus encodes an apparent NADH
           oxidoreductase responsible for electron transport to
           nitrogenase, necessary for nitrogen fixation. A closely
           related complex in E. coli, RsxABCDGE (Reducer of SoxR),
           reduces the 2Fe-2S-containing superoxide sensor SoxR,
           active as a transcription factor when oxidized. This
           family of putative NADH oxidoreductase complexes exists
           in many of the same species as the related NQR, a
           Na(+)-translocating NADH-quinone reductase, but is
           distinct. This model describes the B subunit.
          Length = 165

 Score = 44.0 bits (104), Expect = 8e-06
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
            +  +NCI C  T C++ CPVD        +  +  DEC  C +C   CP D I+
Sbjct: 109 LIDEDNCIGC--TKCIQACPVDAIVGAAKAMHTVIADECTGCDLCVEPCPTDCIE 161


>gnl|CDD|131747 TIGR02700, flavo_MJ0208, archaeoflavoprotein, MJ0208 family.  This
           model describes one of two paralogous families of
           archaealflavoprotein. The other, described by TIGR02699
           and typified by the partially characterized AF1518 of
           Archaeoglobus fulgidus, is a homodimeric FMN-containing
           flavoprotein that accepts electrons from ferredoxin and
           can transfer them to various oxidoreductases. The
           function of this protein family is unknown.
          Length = 234

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 12  CKHTD-CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CK    CV+ CP       +    I   +C+ CG C+  CP +AI 
Sbjct: 150 CKGCGICVDACPRSAIDMVDGKAFIRLLKCVGCGKCKEACPYNAIH 195



 Score = 26.0 bits (57), Expect = 2.0
 Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 18  VEVCPVDCFYEGENFLAIHP-----DECIDCGVCEPECPVDAI 55
           V V PVD  YE      I P       C  CG+C   CP  AI
Sbjct: 125 VWVVPVD--YEEGIIRTITPYMIDRKRCKGCGICVDACPRSAI 165


>gnl|CDD|181550 PRK08764, PRK08764, ferredoxin; Provisional.
          Length = 135

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++V  +CI C  T C++ CPVD    G   +  +    C  C +C P CPVD I+
Sbjct: 79  VAWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAPLCTGCELCVPACPVDCIE 133


>gnl|CDD|182135 PRK09898, PRK09898, hypothetical protein; Provisional.
          Length = 208

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECP 51
            + C  CK   C+ VCP+      +    I  D   CI C  C   CP
Sbjct: 120 ADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACP 167


>gnl|CDD|179124 PRK00783, PRK00783, DNA-directed RNA polymerase subunit D;
           Provisional.
          Length = 263

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPG 62
           V+E+C  C+   CVE CP       E  L +     C  C +CE  CP  AI+   +  
Sbjct: 167 VSEDCDECE--KCVEACPRGVLELKEGKLVVTDLLNCSLCKLCERACPGKAIRVSDDEN 223


>gnl|CDD|162631 TIGR01971, NuoI, NADH-quinone oxidoreductase, chain I.  This model
           represents the I subunit (one of 14: A->N) of the
           NADH-quinone oxidoreductase complex I which generally
           couples NADH and ubiquinone oxidation/reduction in
           bacteria and mammalian mitochondria, but may act on
           NADPH and/or plastoquinone in cyanobacteria and plant
           chloroplasts. This model excludes "I" subunits from the
           closely related F420H2 dehydrogenase and formate
           hydrogenlyase complexes.
          Length = 122

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 26/60 (43%), Positives = 29/60 (48%), Gaps = 12/60 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E CI C  T C  VCP D       EGE+      F  I+   CI CG+CE  CP DAI 
Sbjct: 43  EKCIGC--TLCAAVCPADAIRVVPAEGEDGKRRLKFYQINFGRCIFCGLCEEACPTDAIV 100



 Score = 33.5 bits (77), Expect = 0.011
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 27 YEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEPG 62
          + G   L   P   ++CI C +C   CP DAI+     G
Sbjct: 29 FRGRIVLTRDPNGEEKCIGCTLCAAVCPADAIRVVPAEG 67



 Score = 30.8 bits (70), Expect = 0.077
 Identities = 9/24 (37%), Positives = 9/24 (37%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CP D       F
Sbjct: 84  CIFCGL--CEEACPTDAIVLTPEF 105


>gnl|CDD|163201 TIGR03287, methan_mark_16, putative methanogenesis marker 16
           metalloprotein.  Members of this protein family, to
           date, are found in a completed prokaryotic genome if and
           only if the species is one of the archaeal methanogens.
           The exact function is unknown, but likely is linked to
           methanogenesis or a process closely connected to it.
           This protein is a predicted to bind FeS clusters, based
           on the presence of two copies of the Fer4 domain
           (pfam00037), with each copy having four Cys residues
           invariant across all members.
          Length = 391

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           E C  C      E CPV    +      ++ ++C  CG C   CP  A + + 
Sbjct: 302 ERCENCDPCLVEEACPVPAIKKDGT---LNTEDCFGCGYCAEICPGGAFEVNL 351



 Score = 36.7 bits (85), Expect = 0.001
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 35  IHPDECIDCGVCEPE--CPVDAIKPDTEPGLEL 65
            +P+ C +C  C  E  CPV AIK D     E 
Sbjct: 299 YNPERCENCDPCLVEEACPVPAIKKDGTLNTED 331


>gnl|CDD|180786 PRK06991, PRK06991, ferredoxin; Provisional.
          Length = 270

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           CI C  T C++ CPVD        +  +  D C  C +C P CPVD I
Sbjct: 87  CIGC--TLCMQACPVDAIVGAPKQMHTVLADLCTGCDLCVPPCPVDCI 132



 Score = 31.7 bits (72), Expect = 0.041
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I    CI C +C   CPVDAI
Sbjct: 82  IDEQLCIGCTLCMQACPVDAI 102


>gnl|CDD|180852 PRK07118, PRK07118, ferredoxin; Validated.
          Length = 280

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           CI C    CV+ CP       EN LA I  ++C  CG C  +CP  AI
Sbjct: 215 CIGCGK--CVKACPAGAI-TMENNLAVIDQEKCTSCGKCVEKCPTKAI 259



 Score = 36.1 bits (84), Expect = 0.002
 Identities = 13/40 (32%), Positives = 17/40 (42%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            CV  CP D  +       +  D+C  CG C   CP + I
Sbjct: 146 SCVAACPFDAIHIENGLPVVDEDKCTGCGACVKACPRNVI 185



 Score = 30.3 bits (69), Expect = 0.11
 Identities = 9/17 (52%), Positives = 9/17 (52%)

Query: 40  CIDCGVCEPECPVDAIK 56
           CI CG C   CP  AI 
Sbjct: 215 CIGCGKCVKACPAGAIT 231


>gnl|CDD|184955 PRK14993, PRK14993, tetrathionate reductase subunit B; Provisional.
          Length = 244

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   ++ E+  + +    C+ C  C   CP DA
Sbjct: 99  LCNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDA 146


>gnl|CDD|179940 PRK05113, PRK05113, electron transport complex protein RnfB;
           Provisional.
          Length = 191

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 7/52 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIH---PDECIDCGVCEPECPVDAI 55
           +NCI C  T C++ CPVD         A+H    D C  C +C   CP D I
Sbjct: 114 DNCIGC--TKCIQACPVDAIVGATK--AMHTVISDLCTGCDLCVAPCPTDCI 161



 Score = 33.4 bits (77), Expect = 0.015
 Identities = 12/21 (57%), Positives = 12/21 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  D CI C  C   CPVDAI
Sbjct: 111 IDEDNCIGCTKCIQACPVDAI 131


>gnl|CDD|163157 TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S
           protein.  Members of this protein family are the Fe-S
           protein, NrfC, of a cytochrome c nitrite reductase
           system for which the pentaheme cytochrome c protein,
           NrfB (family TIGR03146) is an unambiguous marker.
           Members of this protein family show similarity to other
           ferredoxin-like proteins, including a subunit of a
           polysulfide reductase.
          Length = 225

 Score = 37.8 bits (88), Expect = 6e-04
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECP 51
           ++C  C +  CV VCP    ++ E    + +H D C+ C  C   CP
Sbjct: 92  KSCQHCDNAPCVAVCPTGASFKDEETGIVDVHKDLCVGCQYCIAACP 138


>gnl|CDD|131234 TIGR02179, PorD_KorD, 2-oxoacid:acceptor oxidoreductase, delta
          subunit, pyruvate/2-ketoisovalerate family.  A number
          of anaerobic and microaerophilic species lack pyruvate
          dehydrogenase and have instead a four subunit,
          oxygen-sensitive pyruvate oxidoreductase, with either
          ferredoxins or flavodoxins used as the acceptor.
          Several related four-subunit enzymes may exist in the
          same species. This model describes a subfamily of delta
          subunits, representing mostly pyruvate,
          2-ketoisovalerate, and 2-oxoglutarate specific enzymes.
          The delta subunit is the smallest and resembles
          ferredoxins.
          Length = 78

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIK 56
          E CI CK  +C   CP     E E  F+ I  D C  CG+C   CPV AI+
Sbjct: 25 EKCIKCK--NCWLYCPEGAIQEDEGGFVGIDYDYCKGCGICANVCPVKAIE 73



 Score = 26.1 bits (58), Expect = 2.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          +  ++CI C  C   CP  AI+ D
Sbjct: 22 VDKEKCIKCKNCWLYCPEGAIQED 45


>gnl|CDD|180305 PRK05888, PRK05888, NADH dehydrogenase subunit I; Provisional.
          Length = 164

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLAIHP---DECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP D          +G      +      CI CG CE  CP DAI
Sbjct: 58  ERCIACKL--CAAICPADAITIEAAEREDGRRRTTRYDINFGRCIFCGFCEEACPTDAI 114



 Score = 34.1 bits (79), Expect = 0.008
 Identities = 10/24 (41%), Positives = 11/24 (45%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CP D   E  +F
Sbjct: 99  CIFCGF--CEEACPTDAIVETPDF 120



 Score = 32.2 bits (74), Expect = 0.033
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 40 CIDCGVCEPECPVDAIKPDTEPG 62
          CI C +C   CP DAI  +    
Sbjct: 60 CIACKLCAAICPADAITIEAAER 82


>gnl|CDD|179919 PRK05035, PRK05035, electron transport complex protein RnfC;
           Provisional.
          Length = 695

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 12/53 (22%)

Query: 9   CILCKHTDCVEVCPVDC-------FYEGENF---LAIHPDECIDCGVCEPECP 51
           CI C    C + CP          F + E        +  +CI+CG C   CP
Sbjct: 372 CIRC--GACADACPASLLPQQLYWFAKAEEHDKAQEYNLFDCIECGACAYVCP 422



 Score = 24.1 bits (53), Expect = 7.2
 Identities = 7/14 (50%), Positives = 7/14 (50%)

Query: 40  CIDCGVCEPECPVD 53
           CI CG C   CP  
Sbjct: 372 CIRCGACADACPAS 385


>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
          Length = 590

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 11/57 (19%)

Query: 11 LCK----HTDCVEVCPV-----DC--FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C+    + +C++ CPV     +     E +    I  + CI CG+C  +CP DAI 
Sbjct: 11 RCQPKKCNYECIKYCPVVRTGEETIEIDEDDGKPVISEELCIGCGICVKKCPFDAIS 67


>gnl|CDD|132268 TIGR03224, benzo_boxA, benzoyl-CoA oxygenase/reductase, BoxA
          protein.  Members of this protein family are BoxA, the
          A component of the BoxAB benzoyl-CoA
          oxygenase/reductase. This oxygen-requiring enzyme acts
          in an aerobic pathway of benzoate catabolism via
          coenzyme A ligation. BoxA is a homodimeric
          iron-sulphur-flavoprotein and acts as an
          NADPH-dependent reductase for BoxB.
          Length = 411

 Score = 36.4 bits (84), Expect = 0.002
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C E CP+D     +    +  D C  C  C   CP  AI
Sbjct: 10 EICIRC--NTCEETCPIDAITHDDRNYVVKADVCNGCMACVSPCPTGAI 56



 Score = 35.6 bits (82), Expect = 0.003
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          I P+ CI C  CE  CP+DAI  D
Sbjct: 7  IDPEICIRCNTCEETCPIDAITHD 30


>gnl|CDD|162887 TIGR02494, PFLE_PFLC, glycyl-radical enzyme activating protein
           family.  This subset of the radical-SAM family
           (pfam04055) includes a number of probable activating
           proteins acting on different enzymes all requiring an
           amino-acid-centered radical. The closest relatives to
           this family are the pyruvate-formate lyase activating
           enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic
           ribonucleotide reductase activating enzyme (TIGR02491).
           Included within this subfamily are activators of
           hydroxyphenyl acetate decarboxylase (HdpA, ),
           benzylsuccinate synthase (BssD, ), gycerol dehydratase
           (DhaB2, ) as well as enzymes annotated in E. coli as
           activators of different isozymes of pyruvate-formate
           lyase (PFLC and PFLE) however, these appear to lack
           characterization and may activate enzymes with
           distinctive functions. Most of the sequence-level
           variability between these forms is concentrated within
           an N-terminal domain which follows a conserved group of
           three cysteines and contains a variable pattern of 0 to
           8 additional cysteines.
          Length = 295

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 3   YVVTENCILCKHTDCVEVCP-----VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
                 C+ C    CVEVCP     +    +G N + I  ++C  CG C   CP  A+ 
Sbjct: 44  LFKENRCLGCG--KCVEVCPAGTARLSELADGRNRIIIRREKCTHCGKCTEACPSGALS 100


>gnl|CDD|163218 TIGR03336, IOR_alpha, indolepyruvate ferredoxin oxidoreductase,
           alpha subunit.  Indolepyruvate ferredoxin oxidoreductase
           (IOR) is an alpha 2/beta 2 tetramer related to ketoacid
           oxidoreductases for pyruvate (1.2.7.1, POR),
           2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate
           (1.2.7.7, VOR). These multi-subunit enzymes typically
           are found in anaerobes and are inactiviated by oxygen.
           IOR in Pyrococcus acts in fermentation of all three
           aromatic amino acids, following removal of the amino
           group by transamination. In Methanococcus maripaludis,
           by contrast, IOR acts in the opposite direction, in
           pathways of amino acid biosynthesis from phenylacetate,
           indoleacetate, and p-hydroxyphenylacetate. In M.
           maripaludis and many other species, iorA and iorB are
           found next to an apparent phenylacetate-CoA ligase.
          Length = 595

 Score = 35.1 bits (81), Expect = 0.004
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 7/54 (12%)

Query: 4   VVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + CI CK   C++   CP       +    I P  C  CGVC   CP DAI
Sbjct: 547 VDQDKCIGCK--KCIKELGCP--AIEPEDKEAVIDP-LCTGCGVCAQICPFDAI 595


>gnl|CDD|184331 PRK13795, PRK13795, hypothetical protein; Provisional.
          Length = 636

 Score = 33.8 bits (78), Expect = 0.010
 Identities = 17/47 (36%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTEP 61
           CV  CP       E    I  DE  CI CG C   CPV   K     
Sbjct: 589 CVGACPTGAIRIEEGKRKISVDEEKCIHCGKCTEVCPVVKYKDKRNG 635



 Score = 32.7 bits (75), Expect = 0.025
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 39  ECIDCGVCEPECPVDAIK 56
           EC+ CGVC   CP  AI+
Sbjct: 582 ECVGCGVCVGACPTGAIR 599



 Score = 25.0 bits (55), Expect = 4.5
 Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 2/21 (9%)

Query: 3   YVVTENCILCKHTDCVEVCPV 23
            V  E CI C    C EVCPV
Sbjct: 608 SVDEEKCIHCG--KCTEVCPV 626


>gnl|CDD|131996 TIGR02951, DMSO_dmsB, DMSO reductase, iron-sulfur subunit.  This
           family consists of the iron-sulfur subunit, or chain B,
           of an enzyme called the anaerobic dimethyl sulfoxide
           reductase. Chains A and B are catalytic, while chain C
           is a membrane anchor.
          Length = 161

 Score = 33.6 bits (77), Expect = 0.013
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    CV+ CP    Y+ E    + +  D+CI C  C   CP  A + D 
Sbjct: 57  AYYISISCNHCADPACVKNCPTGAMYKREEDGLVLVDQDKCIGCRYCVWACPYGAPQYDP 116

Query: 60  EPG 62
           + G
Sbjct: 117 QQG 119


>gnl|CDD|182001 PRK09626, oorD, 2-oxoglutarate-acceptor oxidoreductase subunit
          OorD; Reviewed.
          Length = 103

 Score = 33.5 bits (77), Expect = 0.013
 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 9/53 (16%)

Query: 12 CKHTD-CVEVCPVDCF---YEGENFLA-----IHPDECIDCGVCEPECPVDAI 55
          CK  D CV VCP        +    L      +HP+ CI C  CE  CP  AI
Sbjct: 18 CKACDICVSVCPAGVLAMRIDPHAVLGKMIKVVHPESCIGCRECELHCPDFAI 70


>gnl|CDD|170016 PRK09623, vorD, 2-ketoisovalerate ferredoxin oxidoreductase subunit
           delta; Reviewed.
          Length = 105

 Score = 33.4 bits (76), Expect = 0.015
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           M  V    C+ C    C + CP    Y  E+ ++AI  D C  CG+C  ECP  AI    
Sbjct: 45  MPVVDESKCVKC--YICWKFCPEPAIYIKEDGYVAIDYDYCKGCGICANECPTKAITMVK 102

Query: 60  E 60
           E
Sbjct: 103 E 103


>gnl|CDD|183762 PRK12809, PRK12809, putative oxidoreductase Fe-S binding subunit;
           Reviewed.
          Length = 639

 Score = 33.1 bits (75), Expect = 0.018
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 6   TENCILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
             N + C H +   CV  CPV+      + + +   +CI C  C   CP   ++
Sbjct: 50  AANPVACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVE 103


>gnl|CDD|182649 PRK10689, PRK10689, transcription-repair coupling factor;
           Provisional.
          Length = 1147

 Score = 32.8 bits (75), Expect = 0.018
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 52  VDAIKPDTEPGLELWLKINSEYA--TQWPNITTKKESLPSAA 91
           VD ++P   P   LWL+++  ++    WP +  K E LP+ A
Sbjct: 308 VDPMRPLLPPE-SLWLRVDELFSELKNWPRVQLKTEHLPTKA 348


>gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit;
           Reviewed.
          Length = 654

 Score = 32.8 bits (75), Expect = 0.019
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C   CP       ++ + ++  +CI C  C   CP   ++    P
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTP 108


>gnl|CDD|183735 PRK12771, PRK12771, putative glutamate synthase (NADPH) small
           subunit; Provisional.
          Length = 564

 Score = 32.2 bits (74), Expect = 0.029
 Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 4/56 (7%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           NC  C   +C   CP D               D+C  C +C   CP  AI+     
Sbjct: 511 NCFECD--NCYGACPQDAIIKLGPGRRYHFDYDKCTGCHICADVCPCGAIEMGPGE 564


>gnl|CDD|162737 TIGR02163, napH_, ferredoxin-type protein, NapH/MauN family.  Most
           members of this family are the NapH protein, found next
           to NapG,in operons that encode the periplasmic nitrate
           reductase. Some species with this reductase lack NapC
           but accomplish electron transfer to NapAB in some other
           manner, likely to involve NapH, NapG, and/or some other
           protein. A few members of this protein are designated
           MauN and are found in methylamine utilization operons in
           species that appear to lack a periplasmic nitrate
           reductase.
          Length = 255

 Score = 32.3 bits (74), Expect = 0.029
 Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 8/55 (14%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C  C   DC  VCP           G + L +  D C  CG C   C  D + 
Sbjct: 201 EKCTNC--MDCFNVCPEPQVLRMPLKKGGSTLVLSGD-CTLCGRCIDVCHEDVLG 252



 Score = 26.9 bits (60), Expect = 1.3
 Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 10/63 (15%)

Query: 11  LCKHTDCVEVCPVDCFYE--GENFL----AIHPDECIDCGVCEPECPV----DAIKPDTE 60
             +   C  +CP+  FY   G   L    A   ++C +C  C   CP             
Sbjct: 168 FSERGWCGHLCPLGAFYGLIGRKSLIKIAASDREKCTNCMDCFNVCPEPQVLRMPLKKGG 227

Query: 61  PGL 63
             L
Sbjct: 228 STL 230


>gnl|CDD|162617 TIGR01945, rnfC, electron transport complex, RnfABCDGE type, C
           subunit.  The six subunit complex RnfABCDGE in
           Rhodobacter capsulatus encodes an apparent NADH
           oxidoreductase responsible for electron transport to
           nitrogenase, necessary for nitrogen fixation. A closely
           related complex in E. coli, RsxABCDGE (Reducer of SoxR),
           reduces the 2Fe-2S-containing superoxide sensor SoxR,
           active as a transcription factor when oxidized. This
           family of putative NADH oxidoreductase complexes exists
           in many of the same species as the related NQR, a
           Na(+)-translocating NADH-quinone reductase, but is
           distinct. This model describes the C subunit.
          Length = 435

 Score = 32.3 bits (74), Expect = 0.031
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 12/53 (22%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPD----------ECIDCGVCEPECP 51
           CI C    CV+VCP++   +  N+LA+  +          +CI+CG C   CP
Sbjct: 365 CIRC--GKCVQVCPMNLLPQQLNWLALADEFDEAEEHNLMDCIECGCCSYVCP 415


>gnl|CDD|182382 PRK10330, PRK10330, formate dehydrogenase-H ferredoxin subunit;
           Provisional.
          Length = 181

 Score = 32.2 bits (73), Expect = 0.031
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 110


>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional.
          Length = 604

 Score = 31.7 bits (72), Expect = 0.049
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 38 DECIDCGVCEPECPVDAIK 56
          ++CI CG C   CP DAI 
Sbjct: 45 EKCIGCGTCSKICPTDAIT 63



 Score = 28.6 bits (64), Expect = 0.37
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 9/42 (21%)

Query: 38  DECIDCGVCEPECP--------VDAI-KPDTEPGLELWLKIN 70
             C++CG+C   CP        + AI K D E GL    K N
Sbjct: 185 ARCVECGICTDTCPAHMDIPQYIKAIYKDDLEEGLRWLYKTN 226


>gnl|CDD|162896 TIGR02512, Fe_only_hydrog, hydrogenases, Fe-only.  This model
          describes iron-only hydrogenases of anaerobic and
          microaerophilic bacteria and protozoa. This model is
          narrower, and covers a longer stretch of sequence, than
          Pfam model pfam02906. This family represents a division
          among families that belong to pfam02906, which also
          includes proteins such as nuclear prelamin A
          recognition factor in animals. Note that this family
          shows some heterogeneity in terms of periplasmic,
          cytosolic, or hydrogenosome location, NAD or NADP
          dependence, and overal protein protein length.
          Length = 374

 Score = 31.1 bits (71), Expect = 0.062
 Identities = 17/66 (25%), Positives = 17/66 (25%), Gaps = 16/66 (24%)

Query: 9  CILCKHTDCVEVCP----VDCFYEGENFLAIHP----------DECIDCGVCEPECPVDA 54
          CI C    CV  C     V                          CI CG C   CPV A
Sbjct: 9  CIGC--GRCVRACTNVQIVGALGFLNRGGKTEVAPKFGRLLDESNCIGCGQCSLVCPVGA 66

Query: 55 IKPDTE 60
          I     
Sbjct: 67 ITEKDH 72


>gnl|CDD|170017 PRK09624, porD, pyuvate ferredoxin oxidoreductase subunit delta;
          Reviewed.
          Length = 105

 Score = 30.8 bits (69), Expect = 0.075
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 17 CVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
          C   CP    Y + E +     D C  CG+C  ECP  AI
Sbjct: 59 CYIYCPEPAIYLDEEGYPVFDYDYCKGCGICANECPTKAI 98


>gnl|CDD|162996 TIGR02745, ccoG_rdxA_fixG, cytochrome c oxidase accessory protein
           FixG.  Member of this ferredoxin-like protein family are
           found exclusively in species with an operon encoding the
           cbb3 type of cytochrome c oxidase (cco-cbb3), and near
           the cco-cbb3 operon in about half the cases. The
           cco-cbb3 is found in a variety of proteobacteria and
           almost nowhere else, and is associated with oxygen use
           under microaerobic conditions. Some (but not all) of
           these proteobacteria are also nitrogen-fixing, hence the
           gene symbol fixG. FixG was shown essential for
           functional cco-cbb3 expression in Bradyrhizobium
           japonicum.
          Length = 434

 Score = 30.4 bits (69), Expect = 0.10
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 26/53 (49%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPD-------ECIDCGVCEPECPVDA 54
           CI C    CV+VCP               D       ECI+CG+C     +DA
Sbjct: 233 CIDCNL--CVQVCPT------------GIDIRDGLQLECINCGLC-----IDA 266


>gnl|CDD|131231 TIGR02176, pyruv_ox_red, pyruvate:ferredoxin (flavodoxin)
           oxidoreductase, homodimeric.  This model represents a
           single chain form of pyruvate:ferredoxin (or flavodoxin)
           oxidoreductase. This enzyme may transfer electrons to
           nitrogenase in nitrogen-fixing species. Portions of this
           protein are homologous to gamma subunit of the four
           subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
          Length = 1165

 Score = 30.5 bits (69), Expect = 0.11
 Identities = 18/74 (24%), Positives = 23/74 (31%), Gaps = 29/74 (39%)

Query: 5   VTENCILCKHTDCVEVCP---------------------VDCFYEGENF------LAIHP 37
           V +NCI C    C  VCP                          +G+        + I P
Sbjct: 681 VPDNCIQCNQ--CAFVCPHAAIRPKLADEEELENAPAGFKSLDAKGKELEGMKFRIQISP 738

Query: 38  DECIDCGVCEPECP 51
            +C  CG C   CP
Sbjct: 739 LDCTGCGNCVDICP 752



 Score = 29.4 bits (66), Expect = 0.24
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 37  PDECIDCGVCEPECPVDAIKP 57
           PD CI C  C   CP  AI+P
Sbjct: 682 PDNCIQCNQCAFVCPHAAIRP 702


>gnl|CDD|183008 PRK11168, glpC, sn-glycerol-3-phosphate dehydrogenase subunit C;
          Provisional.
          Length = 396

 Score = 29.8 bits (68), Expect = 0.15
 Identities = 10/21 (47%), Positives = 11/21 (52%)

Query: 38 DECIDCGVCEPECPVDAIKPD 58
          D CI C VC   CPV  + P 
Sbjct: 7  DSCIKCTVCTTACPVARVNPL 27



 Score = 29.5 bits (67), Expect = 0.19
 Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 20/63 (31%)

Query: 7  ENCILCKHTDCVEVCPV---DCFY--------EGENF-----LAIHP--DECIDCGVCEP 48
          ++CI C  T C   CPV   +  Y        +GE                C +C  CE 
Sbjct: 7  DSCIKC--TVCTTACPVARVNPLYPGPKQAGPDGERLRLKDGALYDESLKYCSNCKRCEV 64

Query: 49 ECP 51
           CP
Sbjct: 65 ACP 67


>gnl|CDD|183763 PRK12810, gltD, glutamate synthase subunit beta; Reviewed.
          Length = 471

 Score = 29.7 bits (68), Expect = 0.16
 Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 9/33 (27%)

Query: 38 DECIDCGV--CEPECPVDAIKPDTEPGLELWLK 68
            C+DCG+  C   CPV    P+       W  
Sbjct: 44 ARCMDCGIPFCHWGCPVHNYIPE-------WND 69


>gnl|CDD|183492 PRK12387, PRK12387, formate hydrogenlyase complex iron-sulfur
           subunit; Provisional.
          Length = 180

 Score = 30.0 bits (68), Expect = 0.16
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDC----FYEGENFLA--IHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +            LA   +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  FELAVWKK 103



 Score = 27.3 bits (61), Expect = 0.91
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
          +P +CI C  C   CP +A+  +T+
Sbjct: 36 NPQQCIGCAACVNACPSNALTVETD 60


>gnl|CDD|131115 TIGR02060, aprB, adenosine phosphosulphate reductase, beta
          subunit.  During dissimilatory sulfate reduction and
          sulfur oxidation, adenylylsulfate (APS) reductase
          catalyzes reversibly the two-electron reduction of APS
          to sulfite and AMP. Found in several bacterial lineages
          and in Archaeoglobales, APS reductase is a heterodimer
          composed of an alpha subunit containing a noncovalently
          bound FAD, and a beta subunit containing two [4Fe-4S]
          clusters. Described by this model is the beta subunit
          of APS reductase, sharing common evolutionary origin
          with other iron-sulfur cluster-binding proteins.
          Length = 132

 Score = 29.6 bits (66), Expect = 0.17
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 6/60 (10%)

Query: 2  TYVVTENCILCK---HTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAI 55
          T+V    C  CK    T CV +CP D  +   E      I PD C +C  C   CP  AI
Sbjct: 3  TFVYPTKCDGCKAGEKTACVYICPNDLMHLDTEIMKAYNIEPDMCWECYSCVKACPQGAI 62


>gnl|CDD|181891 PRK09477, napH, quinol dehydrogenase membrane component;
           Provisional.
          Length = 271

 Score = 29.5 bits (67), Expect = 0.19
 Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 7/54 (12%)

Query: 7   ENCILCKHTDCVEVCP---V--DCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + C  C   DC  VCP   V        ++   +   +CI CG C   C  D  
Sbjct: 208 QKCTRC--MDCFHVCPEPQVLRPPLKGKQSPSQVTSGDCITCGRCIDVCSEDVF 259


>gnl|CDD|182807 PRK10882, PRK10882, hydrogenase 2 protein HybA; Provisional.
          Length = 328

 Score = 29.6 bits (67), Expect = 0.20
 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECP 51
           C+ C   +CV VCPV    +      +    D C  C  C   CP
Sbjct: 112 CMHCVDPNCVSVCPVSALTKDPKTGIVHYDKDVCTGCRYCMVACP 156


>gnl|CDD|179457 PRK02651, PRK02651, photosystem I subunit VII; Provisional.
          Length = 81

 Score = 29.2 bits (65), Expect = 0.22
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 10/57 (17%)

Query: 5  VTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPVD 53
          + + CI C  T CV  CP+D            G+   +   ++C+ C  CE  CP D
Sbjct: 7  IYDTCIGC--TQCVRACPLDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTD 61


>gnl|CDD|131121 TIGR02066, dsrB, sulfite reductase, dissimilatory-type beta
           subunit.  This model describes the beta subunit of
           sulfite reductase.
          Length = 341

 Score = 29.0 bits (65), Expect = 0.28
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 12  CKHTDCVEVCPVDCF---YEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+    V  CP        +G+N  L +  ++CI CG C   CP   I      G  +W+
Sbjct: 184 CEIPSVVAACPTGALKPRRDGKNKSLEVDVEKCIYCGNCYTMCPAMPIFDPENDGAAIWV 243


>gnl|CDD|116890 pfam08307, Glyco_hydro_98C, Glycosyl hydrolase family 98
          C-terminal domain.  This putative domain is found at
          the C-terminus of glycosyl hydrolase family 98
          proteins. This domain is not expected to form part of
          the catalytic activity.
          Length = 231

 Score = 28.8 bits (64), Expect = 0.29
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 68 KINSEYATQWPNITTKKESLPS 89
          K+ SE +T+  +I  K + L +
Sbjct: 74 KLISENSTELSSIAAKTQYLNA 95


>gnl|CDD|179174 PRK00941, PRK00941, acetyl-CoA decarbonylase/synthase complex
           subunit alpha; Validated.
          Length = 781

 Score = 28.8 bits (65), Expect = 0.33
 Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 11/52 (21%)

Query: 9   CILCKHTDCVEVCP-----VDCFYEGEN----FLAIHPDECIDCGVCEPECP 51
           C  C    CV VCP      +            L    D+CI CG CE  CP
Sbjct: 406 CTECG--WCVRVCPNELPIPEAMEAAAKGDLSKLEDLYDKCIGCGRCEQVCP 455



 Score = 24.2 bits (53), Expect = 7.0
 Identities = 6/14 (42%), Positives = 8/14 (57%)

Query: 38  DECIDCGVCEPECP 51
            +C +CG C   CP
Sbjct: 404 KKCTECGWCVRVCP 417


>gnl|CDD|132092 TIGR03048, PS_I_psaC, photosystem I iron-sulfur protein PsaC.
          Members of this family are PsaC, an essential component
          of photosystem I (PS-I) reaction center in
          Cyanobacteria and chloroplasts. This small protein,
          about 80 amino acids in length, contains two copies of
          the ferredoxin-like 4Fe-4S binding site (pfam00037) and
          therefore eight conserved Cys residues. This protein is
          also called photosystem I subunit VII.
          Length = 80

 Score = 28.3 bits (63), Expect = 0.44
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 10/68 (14%)

Query: 5  VTENCILCKHTDCVEVCPVDCF----YEG--ENFLAIHP--DECIDCGVCEPECPVDAIK 56
          + + CI C  T CV  CP D      ++G     +A  P  ++C+ C  CE  CP D + 
Sbjct: 6  IYDTCIGC--TQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDCVGCKRCESACPTDFLS 63

Query: 57 PDTEPGLE 64
               G E
Sbjct: 64 VRVYLGAE 71


>gnl|CDD|182113 PRK09853, PRK09853, putative selenate reductase subunit YgfK;
           Provisional.
          Length = 1019

 Score = 28.0 bits (63), Expect = 0.49
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 7/44 (15%)

Query: 17  CVEVCP----VDCFYEG--ENFLAIHPDE-CIDCGVCEPECPVD 53
           CV+VCP    V     G    F  +H D  C +CG C   CP +
Sbjct: 898 CVDVCPNRANVSIAVPGFQNRFQIVHLDAMCNECGNCAQFCPWN 941


>gnl|CDD|132422 TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase,
          anaerobic, C subunit.  Members of this protein family
          are the membrane-anchoring, non-catalytic C subunit,
          product of the glpC gene, of a three-subunit,
          FAD-dependent, anaerobic glycerol-3-phosphate
          dehydrogenase. GlpC lasks classical hydrophobic
          transmembrane helices; Cole, et al suggest interaction
          with the membrane may involve amphipathic helices. GlcC
          has conserved Cys-containing motifs suggestive of
          iron-sulfur binding. This complex is found mostly in
          Escherichia coli and closely related species.
          Length = 397

 Score = 28.2 bits (63), Expect = 0.54
 Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 20/65 (30%)

Query: 7  ENCILCKHTDCVEVCPV-----------DCFYEGENFLAIHP---DE----CIDCGVCEP 48
          E+CI C  T C   CPV               +GE          DE    C +C  CE 
Sbjct: 5  ESCIKC--TVCTVYCPVAKANPLYPGPKQAGPDGERLRLKSAELYDEALKYCTNCKRCEV 62

Query: 49 ECPVD 53
           CP D
Sbjct: 63 ACPSD 67



 Score = 26.7 bits (59), Expect = 1.4
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 38 DECIDCGVCEPECPVDAIKP 57
          + CI C VC   CPV    P
Sbjct: 5  ESCIKCTVCTVYCPVAKANP 24


>gnl|CDD|161850 TIGR00384, dhsB, succinate dehydrogenase and fumarate reductase
           iron-sulfur protein.  Succinate dehydrogenase and
           fumarate reductase are reverse directions of the same
           enzymatic interconversion, succinate + FAD+ = fumarate +
           FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse
           reactions are catalyzed by distinct complexes: fumarate
           reductase operates under anaerobic conditions and
           succinate dehydrogenase operates under aerobic
           conditions. This model also describes a region of the B
           subunit of a cytosolic archaeal fumarate reductase.
          Length = 220

 Score = 28.2 bits (63), Expect = 0.57
 Identities = 8/20 (40%), Positives = 9/20 (45%)

Query: 39  ECIDCGVCEPECPVDAIKPD 58
            CI CG C   CP     P+
Sbjct: 139 GCILCGCCYSSCPAFWWNPE 158


>gnl|CDD|181037 PRK07569, PRK07569, bidirectional hydrogenase complex protein HoxU;
           Validated.
          Length = 234

 Score = 28.1 bits (63), Expect = 0.57
 Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 17/62 (27%)

Query: 9   CILCKHTDCVEVCPV-------DCFYEGENFLAI----HP----DECIDCGVCEPECPVD 53
           C+LC  T CV VC         D    G     I     P    + C  CG C   CP  
Sbjct: 148 CVLC--TRCVRVCDEIEGAHTWDVAGRGAKSRVITDLNQPWGTSETCTSCGKCVQACPTG 205

Query: 54  AI 55
           AI
Sbjct: 206 AI 207


>gnl|CDD|181301 PRK08222, PRK08222, hydrogenase 4 subunit H; Validated.
          Length = 181

 Score = 27.8 bits (62), Expect = 0.68
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)

Query: 37 PDECIDCGVCEPECPVDA--IKPDTEPGLELW 66
          P +CI CG C   CP +A  I+ D +     W
Sbjct: 37 PSQCIACGACTCACPANALTIQTDDQQNSRTW 68



 Score = 27.4 bits (61), Expect = 0.84
 Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 22/62 (35%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-------------CIDCGVCEPECPVD 53
            CI C    C   CP        N L I  D+             CI CG CE  CP  
Sbjct: 38 SQCIAC--GACTCACPA-------NALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTR 88

Query: 54 AI 55
          AI
Sbjct: 89 AI 90


>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit.
           Members of this protein family are YgfK, predicted to be
           one subunit of a three-subunit, molybdopterin-containing
           selenate reductase. This enzyme is found, typically, in
           genomic regions associated with xanthine dehydrogenase
           homologs predicted to belong to the selenium-dependent
           molybdenum hydroxylases (SDMH). Therefore, the selenate
           reductase is suggested to play a role in furnishing
           selenide for SelD, the selenophosphate synthase.
          Length = 1012

 Score = 27.8 bits (62), Expect = 0.70
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 9/56 (16%)

Query: 7   ENCILCKH--TDCVEVCP----VDCFYEGEN--FLAIHPDE-CIDCGVCEPECPVD 53
           + C+ C +    CV+VCP    +  +  G    F  +H D  C +CG C   CP D
Sbjct: 881 QRCLECSYVCEKCVDVCPNRANIVIYVPGFRDQFQIVHLDGMCNECGNCATFCPYD 936


>gnl|CDD|181399 PRK08348, PRK08348, NADH-plastoquinone oxidoreductase subunit;
          Provisional.
          Length = 120

 Score = 27.5 bits (61), Expect = 0.79
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFL 33
          T  C+ C    CV+VCP       ++FL
Sbjct: 72 TGRCVFCGQ--CVDVCPTGALQMSDDFL 97



 Score = 27.1 bits (60), Expect = 1.0
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 9  CILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C+ C+   CV VCP   F        +A+    C+ CG C   CP  A++
Sbjct: 44 CVGCRM--CVTVCPAGVFVYLPEIRKVALWTGRCVFCGQCVDVCPTGALQ 91


>gnl|CDD|131958 TIGR02912, sulfite_red_C, sulfite reductase, subunit C.  Members of
           this protein family include the C subunit, one of three
           subunits, of the anaerobic sulfite reductase of
           Salmonella, and close homologs from various Clostridum
           species, where the three-gene neighborhood is preserved.
           Two such gene clusters are found in Clostridium
           perfringens, but it may be that these sets of genes
           correspond to the distinct assimilatory and
           dissimilatory forms as seen in Clostridium pasteurianum.
           Note that any one of these enzymes may have secondary
           substates such as NH2OH, SeO3(2-), and SO3(2-).
           Heterologous expression of the anaerobic sulfite
           reductase of Salmonella confers on Escherichia coli the
           ability to produce hydrogen sulfide gas from sulfite.
          Length = 314

 Score = 27.5 bits (61), Expect = 0.79
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 7/50 (14%)

Query: 9   CILCKHTDCVEVC---PVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           CI C    CV+VC    V      EN+  +     CI CG C  +CP  A
Sbjct: 171 CIGCGA--CVKVCKKKAVGAL-SFENYKVVRDHSKCIGCGECVLKCPTGA 217


>gnl|CDD|181779 PRK09326, PRK09326, F420H2 dehydrogenase subunit F; Provisional.
          Length = 341

 Score = 27.5 bits (61), Expect = 0.80
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I  D C  CG CE  CP+ AI
Sbjct: 9  IEYDVCTACGACEAVCPIGAI 29


>gnl|CDD|132337 TIGR03294, FrhG, coenzyme F420 hydrogenase, subunit gamma.  This
           model represents that clade of F420-dependent
           hydrogenases (FRH) beta subunits found exclusively and
           universally in methanogenic archaea. This protein
           contains two 4Fe-4S cluster binding domains (pfam00037)
           and scores above the trusted cutoff to model pfam01058
           for the "NADH ubiquinone oxidoreductase, 20 Kd subunit"
           family.
          Length = 228

 Score = 27.5 bits (61), Expect = 0.82
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           MT VV +  C+ C    C   CP       +    ++ D CI CG C  +CP
Sbjct: 167 MTKVVNQGLCMGCG--TCAAACPTRAIEMEDGRPNVNRDRCIKCGACYVQCP 216


>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional.
          Length = 464

 Score = 27.3 bits (61), Expect = 0.84
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 7  ENCILCKHTDCVEVCPV 23
            C+ CK   CV+ CPV
Sbjct: 40 SRCLQCKKPKCVKGCPV 56


>gnl|CDD|172522 PRK14028, PRK14028, pyruvate ferredoxin oxidoreductase subunit
           gamma/delta; Provisional.
          Length = 312

 Score = 27.3 bits (60), Expect = 0.98
 Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 15/61 (24%)

Query: 9   CILCKHTDCVEVCPVDCFYE---------GENFLAIHPD----ECIDCGVCEPECPVDAI 55
           CI+C+   C   CP D   E         G  F     D     C  CGVC   CP  AI
Sbjct: 249 CIMCR--KCWLYCPDDAIIEAWREAEGPRGRKFRMKMIDFDYQYCKGCGVCAEVCPTGAI 306

Query: 56  K 56
           +
Sbjct: 307 Q 307


>gnl|CDD|129374 TIGR00273, TIGR00273, iron-sulfur cluster-binding protein.  Members
           of this family have a perfect 4Fe-4S binding motif
           C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or
           imperfect (the first Cys replaced by Ser) second copy.
           Members probably bind two 4fe-4S iron-sulfur clusters.
          Length = 432

 Score = 26.8 bits (59), Expect = 1.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)

Query: 40  CIDCGVCEPECPV 52
           CI CG C+ ECPV
Sbjct: 295 CIRCGACQNECPV 307


>gnl|CDD|181890 PRK09476, napG, quinol dehydrogenase periplasmic component;
           Provisional.
          Length = 254

 Score = 26.5 bits (59), Expect = 1.6
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)

Query: 35  IHPDECIDCGVCEPECPVD--AIK 56
           +H D C  CG CE  C ++  AIK
Sbjct: 181 VHSDACTGCGKCEKACVLEKAAIK 204



 Score = 24.2 bits (53), Expect = 7.4
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 4/27 (14%)

Query: 30 ENFLAIHPDECIDCGVCEPECPVDAIK 56
           +FL+     CI CG+C   CP D +K
Sbjct: 55 NDFLS----ACIRCGLCVQACPYDTLK 77


>gnl|CDD|162107 TIGR00918, 2A060602, The Eukaryotic (Putative) Sterol Transporter
           (EST) Family. 
          Length = 1145

 Score = 26.4 bits (58), Expect = 1.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLA 34
           IL K   C+ + P+DCF+EG     
Sbjct: 179 ILEKLIPCLIITPLDCFWEGAKLQG 203


>gnl|CDD|183604 PRK12576, PRK12576, succinate dehydrogenase iron-sulfur subunit;
           Provisional.
          Length = 279

 Score = 26.3 bits (58), Expect = 1.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 39  ECIDCGVCEPECPVDAIKPD 58
           +CI CG+C   CPV AI P+
Sbjct: 153 QCIWCGLCVSACPVVAIDPE 172


>gnl|CDD|177700 PLN00071, PLN00071, photosystem I subunit VII; Provisional.
          Length = 81

 Score = 26.1 bits (57), Expect = 2.1
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 10/57 (17%)

Query: 5  VTENCILCKHTDCVEVCPVDCF----YEG--ENFLAIHP--DECIDCGVCEPECPVD 53
          + + CI C  T CV  CP D      ++G     +A  P  ++C+ C  CE  CP D
Sbjct: 7  IYDTCIGC--TQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTD 61


>gnl|CDD|177602 PHA03365, PHA03365, hypothetical protein; Provisional.
          Length = 419

 Score = 26.2 bits (58), Expect = 2.2
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 3/32 (9%)

Query: 14  HTDCVEVCPVDCFYEGENFLAIH---PDECID 42
           HT   EVCPV+    G+N++ +    P E +D
Sbjct: 218 HTVQGEVCPVNAVRLGKNYVRVSVDKPSEKLD 249


>gnl|CDD|163077 TIGR02936, fdxN_nitrog, ferredoxin III, nif-specific.  Members of
          this family are homodimeric ferredoxins from nitrogen
          fixation regions of many nitrogen-fixing bacteria. As
          characterized in Rhodobacter capsulatus, these proteins
          are homodimeric, with two 4Fe-4S clusters bound per
          monomer. Although nif-specific, this protein family is
          not usiveral, as other nitrogenase systems may
          substitute flavodoxins, or different types of
          ferredoxin.
          Length = 91

 Score = 26.2 bits (58), Expect = 2.2
 Identities = 8/20 (40%), Positives = 9/20 (45%)

Query: 35 IHPDECIDCGVCEPECPVDA 54
           +P  CI CG C   CP   
Sbjct: 67 ANPGNCIGCGACARVCPKKC 86



 Score = 24.3 bits (53), Expect = 6.8
 Identities = 10/26 (38%), Positives = 10/26 (38%), Gaps = 2/26 (7%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF 26
          M      NCI C    C  VCP  C 
Sbjct: 64 MVVANPGNCIGCG--ACARVCPKKCQ 87


>gnl|CDD|182296 PRK10194, PRK10194, ferredoxin-type protein; Provisional.
          Length = 163

 Score = 25.8 bits (56), Expect = 2.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPD 58
           ++   C  CG C   CPV AI  +
Sbjct: 135 LNSQLCNGCGACAASCPVSAITAE 158


>gnl|CDD|129414 TIGR00314, cdhA, CO dehydrogenase/acetyl-CoA synthase complex,
           epsilon subunit.  Acetyl-CoA decarbonylase/synthase
           (ACDS) is a multienzyme complex. Carbon monoxide
           dehydrogenase is a synonym. The ACDS complex carries out
           an unusual reaction involving the reversible cleavage
           and synthesis of acetyl-CoA in methanogens. The model
           contains the prosite signature for 4Fe-4S ferredoxins
           [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462
           of the model.
          Length = 784

 Score = 26.0 bits (57), Expect = 2.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 38  DECIDCGVCEPECP 51
           ++C  CG CE  CP
Sbjct: 437 EQCYACGRCEQACP 450


>gnl|CDD|162882 TIGR02486, RDH, reductive dehalogenase.  This model represents a
           family of corrin and 8-iron Fe-S cluster-containing
           reductive dehalogenases found primarily in halorespiring
           microorganisms such as dehalococcoides ethenogenes which
           contains as many as 17 enzymes of this type with varying
           substrate ranges. One example of a characterized species
           is the tetrachloroethene reductive dehalogenase
           (1.97.1.8) which also acts on trichloroethene converting
           it to dichloroethene.
          Length = 314

 Score = 25.5 bits (56), Expect = 2.9
 Identities = 11/25 (44%), Positives = 12/25 (48%)

Query: 40  CIDCGVCEPECPVDAIKPDTEPGLE 64
           C  CG C  ECP  AI    EP  +
Sbjct: 207 CETCGKCADECPSGAISKGGEPTWD 231


>gnl|CDD|181383 PRK08318, PRK08318, dihydropyrimidine dehydrogenase subunit B;
           Validated.
          Length = 420

 Score = 25.7 bits (57), Expect = 3.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query: 35  IHPDECIDCGVCEPEC 50
           I  D+CI CG C   C
Sbjct: 339 IDQDKCIGCGRCYIAC 354



 Score = 25.3 bits (56), Expect = 3.8
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 8/53 (15%)

Query: 7   ENCILCKHTDCVEVC------PVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           + CI C    C   C       ++   +G     +  +EC+ C +C   CPV+
Sbjct: 342 DKCIGCGR--CYIACEDTSHQAIEWDEDGTRTPEVIEEECVGCNLCAHVCPVE 392


>gnl|CDD|183490 PRK12385, PRK12385, fumarate reductase iron-sulfur subunit;
           Provisional.
          Length = 244

 Score = 25.4 bits (56), Expect = 3.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 40  CIDCGVCEPECPVDAIKPD 58
           CI+CG+C   CP   + P+
Sbjct: 149 CINCGLCYAACPQFGLNPE 167


>gnl|CDD|132518 TIGR03478, DMSO_red_II_bet, DMSO reductase family type II enzyme,
           iron-sulfur subunit.  This model represents the
           iron-sulfur subunit, typically called the beta subunit,
           of various proteins that also contain a molybdopterin
           subunit and a heme b subunit. The group includes two
           distinct but very closely related periplasmic proteins
           of anaerobic respiration, selenate reductase and
           chlorate reductase. Other members of this family include
           dimethyl sulphide dehydrogenase and ethylbenzene
           dehydrogenase.
          Length = 321

 Score = 25.5 bits (56), Expect = 3.5
 Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C +  C+  CP    Y  E +  + +  + C     C   CP   +
Sbjct: 131 CNHCTNPACLAACPTGAIYKREEDGIVLVDQERCKGYRYCVEACPYKKV 179


>gnl|CDD|129498 TIGR00403, ndhI, NADH-plastoquinone oxidoreductase subunit I
           protein. 
          Length = 183

 Score = 25.3 bits (55), Expect = 4.1
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C   +CVE CP +C    E +
Sbjct: 104 CIFCG--NCVEYCPTNCLSMTEEY 125



 Score = 24.9 bits (54), Expect = 5.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 38 DECIDCGVCEPECPVD 53
          D+CI C VC   CP++
Sbjct: 62 DKCIACEVCVRVCPIN 77



 Score = 24.1 bits (52), Expect = 8.3
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C+   CV VCP++       F            +I    CI CG C   CP + +
Sbjct: 62  DKCIACEV--CVRVCPINLPVVDWEFNKAIKKKQLKNYSIDFGVCIFCGNCVEYCPTNCL 119


>gnl|CDD|180502 PRK06273, PRK06273, ferredoxin; Provisional.
          Length = 165

 Score = 25.1 bits (55), Expect = 4.4
 Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)

Query: 38 DECIDCGVCEPECPVDAIK-PDTEP 61
          + CI CG C   CP  AI+    EP
Sbjct: 49 ELCIGCGGCANVCPTKAIEMIPVEP 73


>gnl|CDD|184136 PRK13552, frdB, fumarate reductase iron-sulfur subunit;
           Provisional.
          Length = 239

 Score = 24.9 bits (55), Expect = 4.6
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 38  DECIDCGVCEPECPVDAIKPD 58
           D CI+CG C   C    ++ D
Sbjct: 149 DRCIECGCCVAACGTKQMRED 169


>gnl|CDD|181450 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
          Length = 819

 Score = 25.1 bits (55), Expect = 4.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 39  ECIDCGVCEPECPVDAI 55
           +C  CG C   CPV A+
Sbjct: 205 DCSFCGECIAVCPVGAL 221


>gnl|CDD|129492 TIGR00397, mauM_napG, MauM/NapG family ferredoxin-type protein.
          MauM is involved in methylamine utilization. NapG is
          associated with nitrate reductase activity. The two
          proteins are highly similar.
          Length = 213

 Score = 24.5 bits (53), Expect = 5.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 40 CIDCGVCEPECPVDAIK 56
          C+ CG+C   CP D + 
Sbjct: 55 CVRCGLCVEACPYDILS 71


>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional.
          Length = 433

 Score = 24.6 bits (54), Expect = 6.4
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEP 48
             Y      C  C   +  EVC ++C  + E+     + P+E +   + EP
Sbjct: 166 SVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEE-VAAVIIEP 215


>gnl|CDD|162435 TIGR01582, FDH-beta, formate dehydrogenase, beta subunit, Fe-S
           containing.  In addition to the gamma proteobacteria, a
           sequence from Aquifex aolicus falls within the scope of
           this model. This appears to be the case for the alpha,
           gamma and epsilon (accessory protein TIGR01562) chains
           as well.
          Length = 283

 Score = 24.5 bits (53), Expect = 6.4
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVD--CFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C+ C+   C++ CP            +     +CI CG C   CP +
Sbjct: 93  CMHCREPGCLKACPAPGAIIQYQNGIVDFDHSKCIGCGYCIVGCPFN 139


>gnl|CDD|162880 TIGR02484, CitB, CitB domain protein.  CobZ is essential for
          cobalamin biosynthesis (by knockout of the R.
          capsulatus gene ) and is complemented by the
          characterized precorrin 3B synthase CobG. The enzyme
          has been shown to contain flavin, heme and Fe-S cluster
          cofactors and is believed to require dioxygen as a
          substrate. This model identifies the C-terminal domain
          of the R. capsulatus CobZ, which, in most other species
          exists as a separate gene adjacent to CobZ.
          Length = 372

 Score = 24.5 bits (53), Expect = 6.5
 Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 4/29 (13%)

Query: 24 DCFYEGENFLAIHPDECIDCGVCEPECPV 52
          D F E +  L +    C  CG C   C V
Sbjct: 4  DPFAEAKRVLNL----CNSCGYCTGLCAV 28


>gnl|CDD|161798 TIGR00276, TIGR00276, iron-sulfur cluster binding protein,
           putative.  This series of proteins contain the prosite
           signature for 4Fe-4S ferredoxins iron-sulfur binding
           proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues
           175-188 of the model.
          Length = 282

 Score = 24.4 bits (53), Expect = 7.2
 Identities = 6/20 (30%), Positives = 8/20 (40%)

Query: 36  HPDECIDCGVCEPECPVDAI 55
             + C  C  C   CP  A+
Sbjct: 157 IEEYCGRCTKCIDACPTQAL 176


>gnl|CDD|183739 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
           hydroxylase/glutamate synthase subunit beta;
           Provisional.
          Length = 752

 Score = 24.3 bits (53), Expect = 7.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 9   CILCKHTDCVEVCPV 23
           C+ CK+  CVE CPV
Sbjct: 331 CLDCKNPGCVEGCPV 345


>gnl|CDD|161860 TIGR00402, napF, ferredoxin-type protein NapF.  The gene codes
          for a ferredoxin-type cytosolic protein, NapF, of the
          periplasmic nitrate reductase system, as in Escherichia
          coli. NapF interacts with the catalytic subunit, NapA,
          and may be an accessory protein for NapA maturation.
          Length = 101

 Score = 24.1 bits (52), Expect = 8.0
 Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 3/45 (6%)

Query: 16 DCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKP 57
          +C   C  +    G+           EC  CG C   CP +A  P
Sbjct: 41 ECASACENNILQLGQQGQPTVEFDNAECDFCGKCAEACPTNAFHP 85


>gnl|CDD|182000 PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta;
           Reviewed.
          Length = 133

 Score = 23.9 bits (52), Expect = 8.3
 Identities = 25/86 (29%), Positives = 30/86 (34%), Gaps = 15/86 (17%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            E CI C +  C   CP        +    +    C  CGVC   CP       T P   
Sbjct: 58  NEICINCFN--CWVYCPDAAILSRDKKLKGVDYSHCKGCGVCVEVCP-------TNPK-S 107

Query: 65  LWL----KINSEYATQWPNITTKKES 86
           L +      N    TQWP    KK+S
Sbjct: 108 LLMFEEQIENETALTQWPKKEEKKKS 133


>gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol
           hydroxylase/glutamate synthase subunit beta/ferritin
           domain-containing protein; Provisional.
          Length = 1006

 Score = 24.1 bits (52), Expect = 8.4
 Identities = 8/17 (47%), Positives = 9/17 (52%)

Query: 7   ENCILCKHTDCVEVCPV 23
           E CI C    C+  CPV
Sbjct: 331 ERCIQCAKPTCIAGCPV 347


>gnl|CDD|171592 PRK12575, PRK12575, succinate dehydrogenase iron-sulfur subunit;
           Provisional.
          Length = 235

 Score = 24.1 bits (52), Expect = 9.2
 Identities = 9/20 (45%), Positives = 9/20 (45%)

Query: 39  ECIDCGVCEPECPVDAIKPD 58
           ECI C  C   CP     PD
Sbjct: 145 ECILCACCSTACPSYWWNPD 164


>gnl|CDD|180322 PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit;
           Reviewed.
          Length = 232

 Score = 24.0 bits (53), Expect = 9.8
 Identities = 7/14 (50%), Positives = 7/14 (50%)

Query: 39  ECIDCGVCEPECPV 52
           ECI C  C   CP 
Sbjct: 142 ECILCACCSTSCPS 155


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.317    0.136    0.453 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,784,445
Number of extensions: 93941
Number of successful extensions: 359
Number of sequences better than 10.0: 1
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 154
Length of query: 113
Length of database: 5,994,473
Length adjustment: 78
Effective length of query: 35
Effective length of database: 4,309,049
Effective search space: 150816715
Effective search space used: 150816715
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)