RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780416|ref|YP_003064829.1| putative ferredoxin protein
[Candidatus Liberibacter asiaticus str. psy62]
         (113 letters)



>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur;
           1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB:
           1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A
           1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A
           1pc4_A 1frj_A 2fd2_A 1fd2_A ...
          Length = 106

 Score = 92.5 bits (229), Expect = 2e-20
 Identities = 61/101 (60%), Positives = 75/101 (74%), Gaps = 2/101 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT--E 60
           +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  +    
Sbjct: 2   FVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEVP 61

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
             ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +
Sbjct: 62  EDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQ 102


>2v2k_A Ferredoxin; iron, 3Fe-4S, 4Fe-4S, transport, iron-sulfur,
           mycobacterium tuberculosis, Fe-S cluster, metal-binding,
           electron transfer; 1.6A {Mycobacterium smegmatis}
          Length = 105

 Score = 81.3 bits (200), Expect = 5e-17
 Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 5/105 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
           TYV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + + 
Sbjct: 1   TYVIAEPCVDVKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDDV 60

Query: 61  -PGLELWLKINSEYATQWPN---ITTKKESLPSAAKMDGVKQKYE 101
                 + + N+++  +  +    +   ++      +  +  + E
Sbjct: 61  PDQWSSYAQANADFFAELGSPGGASKVGQTDNDPQAIKDLPPQGE 105


>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur,
          azotobacter, hydrogen bonds, stability, high
          resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
          Length = 78

 Score = 73.9 bits (181), Expect = 8e-15
 Identities = 35/74 (47%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--DTE 60
          +V+ E CI  K   CVEVCPV+C Y+G +   IHP+ECIDCG C P CPV+AI P  D  
Sbjct: 2  HVICEPCIGVKDQSCVEVCPVECIYDGGDQFYIHPEECIDCGACVPACPVNAIYPEEDVP 61

Query: 61 PGLELWLKINSEYA 74
             + +++ N + A
Sbjct: 62 EQWKSYIEKNRKLA 75


>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus
          schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
          Length = 77

 Score = 72.0 bits (176), Expect = 3e-14
 Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE-- 60
          YV+TE CI  K   CVEVCPVDC +EGE+   I PD CIDCG CE  CPV AI  +    
Sbjct: 2  YVITEPCIGTKDASCVEVCPVDCIHEGEDQYYIDPDVCIDCGACEAVCPVSAIYHEDFVP 61

Query: 61 PGLELWLKINSEYATQ 76
             + +++ N ++  +
Sbjct: 62 EEWKSYIQKNRDFFKK 77


>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A
          {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A
          1fca_A 1clf_A 1dur_A
          Length = 55

 Score = 57.7 bits (139), Expect = 6e-10
 Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          YV+ E CI C    C   CPV+    G++   I  D CIDCG C   CPVDA 
Sbjct: 2  YVINEACISCGA--CEPECPVNAISSGDDRYVIDADTCIDCGACAGVCPVDAP 52



 Score = 29.2 bits (65), Expect = 0.23
 Identities = 13/24 (54%), Positives = 16/24 (66%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          +  + CI CG CEPECPV+AI   
Sbjct: 3  VINEACISCGACEPECPVNAISSG 26


>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
          {Desulfovibrio gigas}
          Length = 166

 Score = 53.9 bits (129), Expect = 9e-09
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 2  TYVVTENCILCKHTD---CVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAI 55
          TYV    C  CK  +   C+ +CP D      E        P+ C +C  C   CP  AI
Sbjct: 2  TYVDPSKCDGCKGGEKTACMYICPNDLMILDPEEMKAFNQEPEACWECYSCIKICPQGAI 61

Query: 56 KP 57
            
Sbjct: 62 TA 63



 Score = 27.7 bits (61), Expect = 0.70
 Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 5/33 (15%)

Query: 35 IHPDECIDC-----GVCEPECPVDAIKPDTEPG 62
          + P +C  C       C   CP D +  D E  
Sbjct: 4  VDPSKCDGCKGGEKTACMYICPNDLMILDPEEM 36


>1jb0_C Photosystem I iron-sulfur center; membrane protein,
          multiprotein-pigment complex, photosynthesis; HET: CL1
          PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP:
          d.58.1.2 PDB: 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 2o01_C*
          Length = 80

 Score = 49.0 bits (116), Expect = 3e-07
 Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 10/78 (12%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + + CI C    CV  CP D            G+   +   ++C+ C  CE  CP D +
Sbjct: 5  KIYDTCIGCTQ--CVRACPTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFL 62

Query: 56 KPDTEPGLELWLKINSEY 73
                G E    +   Y
Sbjct: 63 SIRVYLGAETTRSMGLAY 80


>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein,
           electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA
           3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB:
           1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B*
           3ir7_B* 1y4z_B*
          Length = 512

 Score = 46.6 bits (110), Expect = 1e-06
 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDT 59
              +   C  C +  CV  CP    Y+ E    + I  D+C    +C   CP   I  + 
Sbjct: 177 MMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNW 236

Query: 60  EPG 62
           + G
Sbjct: 237 KSG 239



 Score = 26.6 bits (58), Expect = 1.4
 Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 2/34 (5%)

Query: 32  FLAIHPDECIDCGV--CEPECPVDAIKPDTEPGL 63
           F+   P  C  C    C   CP  AI    E G+
Sbjct: 176 FMMYLPRLCEHCLNPACVATCPSGAIYKREEDGI 209



 Score = 23.9 bits (51), Expect = 8.6
 Identities = 6/26 (23%), Positives = 11/26 (42%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKPD 58
          + ++ D+CI C  C   C       +
Sbjct: 9  MVLNLDKCIGCHTCSVTCKNVWTSRE 34



 Score = 23.9 bits (51), Expect = 8.9
 Identities = 10/33 (30%), Positives = 11/33 (33%), Gaps = 7/33 (21%)

Query: 5   VTENCILCKH-------TDCVEVCPVDCFYEGE 30
            +E CI C         T C E C     Y G 
Sbjct: 240 KSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGV 272


>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport,
          [4Fe-4S] clusters, iron- sulfur clusters, reduction
          potential; 1.65A {Escherichia coli k-12}
          Length = 85

 Score = 45.5 bits (107), Expect = 3e-06
 Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 8/78 (10%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDAIK 56
           ++T+ CI C    C   CP +    G++   I+ D+C +C        C+  CP+    
Sbjct: 2  LLITKKCINCD--MCEPECPNEAISMGDHIYEINSDKCTECVGHYETPTCQKVCPIPNTI 59

Query: 57 PDTEPGLELWLKINSEYA 74
                +E   ++  ++ 
Sbjct: 60 VKDPAHVETEEQLWDKFV 77


>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate
           reduction, oxidored sulfite reduction; HET: SRM; 1.76A
           {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B*
          Length = 386

 Score = 44.6 bits (105), Expect = 6e-06
 Identities = 13/65 (20%), Positives = 24/65 (36%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
                  +    T  V+    +   +    +AI+ D C+ CG C   CP   +   T  G
Sbjct: 221 LCEIPLAVAACPTAAVKPITAEVNGQKVKSVAINNDRCMYCGNCYTMCPALPLSDGTGDG 280

Query: 63  LELWL 67
           + + +
Sbjct: 281 IAIMV 285



 Score = 25.0 bits (54), Expect = 4.6
 Identities = 14/58 (24%), Positives = 18/58 (31%), Gaps = 5/58 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCE-----PECPVDAIKPDT 59
              + C    C  V   D    G +      D      +CE       CP  A+KP T
Sbjct: 183 RVSLACCINMCGAVHCSDIGLVGIHRKPPMIDHENLAELCEIPLAVAACPTAAVKPIT 240


>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon
           degradation, MOCO, Fe/S cluster, MO- bismgd enzyme, DMSO
           reductase family; HET: MES MGD MD1 HEM; 1.88A {Azoarcus
           SP}
          Length = 352

 Score = 42.5 bits (99), Expect = 2e-05
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 2/63 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + +   C  C +  C+  CP    Y  E    + +  + C     C   CP  AI  +  
Sbjct: 145 FYLARMCNHCTNPACLAACPTGAIYKREDNGIVLVDQERCKGHRHCVEACPYKAIYFNPV 204

Query: 61  PGL 63
              
Sbjct: 205 SQT 207


>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica K172}
          SCOP: d.58.1.1
          Length = 80

 Score = 42.1 bits (98), Expect = 3e-05
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDAIK 56
            + ++C  C    CVE CP +    G+    I P +C +C        C   CP D I 
Sbjct: 2  LYINDDCTACDA--CVEECPNEAITPGDPIYVIDPTKCSECVGAFDEPQCRLVCPADCIP 59

Query: 57 PDTE 60
           + +
Sbjct: 60 DNPD 63


>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
          {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB:
          1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
          Length = 150

 Score = 41.8 bits (97), Expect = 4e-05
 Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 6/58 (10%)

Query: 2  TYVVTENCILCKH---TDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVD 53
          ++V  E C  CK    T C  +CP D      E        PD C +C  C   CP  
Sbjct: 3  SFVNPEKCDGCKALERTACEYICPNDLMTLDKEKMKAYNREPDMCWECYSCVKMCPQG 60



 Score = 26.4 bits (57), Expect = 1.8
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 5/33 (15%)

Query: 35 IHPDECIDCG-----VCEPECPVDAIKPDTEPG 62
          ++P++C  C       CE  CP D +  D E  
Sbjct: 5  VNPEKCDGCKALERTACEYICPNDLMTLDKEKM 37


>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
          cluster, adenosine diphosphate, nucleotide-binding;
          HET: ADP; 2.80A {Pyrococcus abyssi}
          Length = 607

 Score = 41.5 bits (97), Expect = 4e-05
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 7/52 (13%)

Query: 12 CKHTDCVEVCPV-----DCF-YEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
          C H  C  VCPV     +    + EN+   I    C  CG+C  +CP +AI 
Sbjct: 34 CGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHKCPFNAIS 85


>3mm5_B Sulfite reductase, dissimilatory-type subunit BET;
           alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A
           {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B*
           3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
          Length = 366

 Score = 41.2 bits (96), Expect = 6e-05
 Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 2/61 (3%)

Query: 9   CILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
              C+    V  CP            + +  ++C+ CG C   CP   +      G  + 
Sbjct: 208 RKTCEIPSTVAACPTGALKPDMKNKTIKVDVEKCMYCGNCYTMCPGMPLFDPENDGAAIM 267

Query: 67  L 67
           +
Sbjct: 268 V 268


>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron,
          iron-sulfur, metal-binding, transport; 1.05A
          {Allochromatium vinosum} PDB: 1blu_A 3exy_A
          Length = 82

 Score = 41.0 bits (95), Expect = 6e-05
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 8/65 (12%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDAIK 56
           ++T+ CI C    C   CP     +G+    I P  C +C        C   CPVDAI 
Sbjct: 2  LMITDECINCDV--CEPECPNGAISQGDETYVIEPSLCTECVGHYETSQCVEVCPVDAII 59

Query: 57 PDTEP 61
           D   
Sbjct: 60 KDPSH 64


>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction
          potential, iron binding protein electron transport;
          1.32A {Pseudomonas aeruginosa}
          Length = 82

 Score = 40.9 bits (95), Expect = 6e-05
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 8/62 (12%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDAIKPD 58
          +T++CI C    C   CP     +GE    I P+ C +C        C+  CPVD I  D
Sbjct: 4  ITDDCINCDV--CEPECPNGAISQGEEIYVIDPNLCTECVGHYDEPQCQQVCPVDCIPLD 61

Query: 59 TE 60
            
Sbjct: 62 DA 63


>1kqf_B FDH-N beta, formate dehydrogenase, nitrate-inducible, iron- sulfur
           subunit; oxidoreductase, selenium, selenocysteine,
           seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia
           coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
          Length = 294

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTE 60
            +  + C+ C+   C++ CP            +      CI CG C   CP +  + + E
Sbjct: 94  LIRKDGCMHCEDPGCLKACPSAGAIIQYANGIVDFQSENCIGCGYCIAGCPFNIPRLNKE 153

Query: 61  PG 62
             
Sbjct: 154 DN 155


>2v4j_B Sulfite reductase, dissimilatory-type subunit beta; dissimilatory
           sulfite reductase, complex, siroheme, oxidoreductase;
           HET: SRM; 2.10A {Desulfovibrio vulgaris} SCOP: d.58.1.5
           d.58.36.2 d.134.1.1
          Length = 381

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 13/60 (21%), Positives = 23/60 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
             +    T  V    ++   +  N +AI  + C+ CG C   CP   I      G+ + +
Sbjct: 226 LAVASCPTAAVRPTKLEIGDKKVNTIAIKNERCMYCGNCYTMCPALPISDGEGDGVVIMV 285


>3c7b_B Sulfite reductase, dissimilatory-type subunit beta; alpha/beta
           fold, 4Fe-4S, heme, iron, iron-sulfur, membrane,
           metal-binding; HET: SRM; 2.00A {Archaeoglobus fulgidus}
           SCOP: d.58.1.5 d.58.36.2 d.134.1.1
          Length = 366

 Score = 38.1 bits (88), Expect = 5e-04
 Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 2/61 (3%)

Query: 9   CILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
              C+    V  CP            + +  ++C+ CG C   CP   +      G  + 
Sbjct: 208 RKTCEIPSTVAACPTGALKPDMKNKTIKVDVEKCMYCGNCYTMCPGMPLFDPENDGAAIM 267

Query: 67  L 67
           +
Sbjct: 268 V 268


>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP;
           alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A
           {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A*
           3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
          Length = 418

 Score = 38.1 bits (88), Expect = 5e-04
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            + V++CP          L I   EC+ C  C  + P  A+KP  E G  + +
Sbjct: 261 NEVVKLCPTGAIKWDGKELTIDNRECVRCMHCINKMP-KALKPGDERGATILI 312


>2v4j_A Sulfite reductase, dissimilatory-type subunit alpha; dissimilatory
           sulfite reductase, complex, siroheme, oxidoreductase;
           HET: SRM; 2.10A {Desulfovibrio vulgaris} SCOP: d.58.1.5
           d.58.36.2 d.134.1.1
          Length = 437

 Score = 36.8 bits (85), Expect = 0.001
 Identities = 12/46 (26%), Positives = 16/46 (34%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            + V  CP  C     + L+I   EC+ C  C    P      D  
Sbjct: 278 AEVVNRCPSKCMKWDGSKLSIDNKECVRCMHCINTMPRALHIGDER 323


>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur,
           iron-sulfur cluster, pyruvate catabolism, TPP-dependent
           enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP:
           c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB:
           1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A*
           2pda_A* 2uza_A*
          Length = 1231

 Score = 36.9 bits (85), Expect = 0.001
 Identities = 25/106 (23%), Positives = 35/106 (33%), Gaps = 33/106 (31%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF--------------------------YEGENF-LAIH 36
            V ENCI C    C  VCP                               +G  F + I+
Sbjct: 683 WVPENCIQCN--QCAFVCPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYKFRIQIN 740

Query: 37  PDECIDCGVCEPECPV--DAIK-PDTEPGLELWLKINSEYATQWPN 79
             +C+ CG C   CP    A+     +   +  +  N EYA + P 
Sbjct: 741 TLDCMGCGNCADICPPKEKALVMQPLDTQRDAQVP-NLEYAARIPV 785


>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport,
           respiratory chain, 4Fe- 4S, cell membrane, flavoprotein,
           FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8}
           PDB: 2fug_9* 3iam_9* 3ias_9*
          Length = 182

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 14/58 (24%), Positives = 19/58 (32%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
                 I  +  +     PV           I+   CI CG+CE  CP  AI    + 
Sbjct: 62  ACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAIVLGYDF 119


>3c7b_A Sulfite reductase, dissimilatory-type subunit alpha; alpha/beta
           fold, 4Fe-4S, heme, iron, iron-sulfur, membrane,
           metal-binding; HET: SRM; 2.00A {Archaeoglobus fulgidus}
           SCOP: d.58.1.5 d.58.36.2 d.134.1.1
          Length = 417

 Score = 36.4 bits (84), Expect = 0.001
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
              +    + V++CP          L I   EC+ C  C  + P  A+KP  E G  + +
Sbjct: 253 ASWMDIENEVVKLCPTGAIKWDGKELTIDNRECVRCMHCINKMP-KALKPGDERGATILI 311


>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A
          {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
          Length = 103

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 11/59 (18%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
          + CI      C+  CPV+ F   +             ++   CI C  C   CPV AI 
Sbjct: 43 DLCIADGS--CINACPVNVFQWYDTPGHPASEKKADPVNEQACIFCMACVNVCPVAAID 99



 Score = 30.2 bits (67), Expect = 0.10
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 31 NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + +  D CI  G C   CPV+  +    PG
Sbjct: 36 TIVGVDFDLCIADGSCINACPVNVFQWYDTPG 67


>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate
           reduction, oxidored sulfite reduction; HET: SRM; 1.76A
           {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A*
          Length = 437

 Score = 35.0 bits (80), Expect = 0.005
 Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
                + V +CP  C       L+I    C  C  C    P  A+K   E G  + 
Sbjct: 274 FDIEAEVVGLCPTGCMTYESGTLSIDNKNCTRCMHCINTMPR-ALKIGDERGASIL 328


>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
            iron-sulfur clusters, pyrimidine catabolism,
            5-fluorouracil degradation, oxidoreductase; HET: FMN FAD;
            1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1
            d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
          Length = 1025

 Score = 34.6 bits (79), Expect = 0.006
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 9/56 (16%)

Query: 7    ENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPV-DAIK 56
            E CI C    C   C  D  Y+      E  L    D C  C +C   CP+ D I+
Sbjct: 951  EMCINCGK--CYMTCN-DSGYQAIQFDPETHLPTVTDTCTGCTLCLSVCPIIDCIR 1003



 Score = 27.7 bits (61), Expect = 0.70
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 35  IHPDECIDCGVCEPEC---PVDAIKPDTE 60
           I  + CI+CG C   C      AI+ D E
Sbjct: 948 IDEEMCINCGKCYMTCNDSGYQAIQFDPE 976


>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR
          {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
          Length = 58

 Score = 34.4 bits (78), Expect = 0.006
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE---CIDCGVCEPECPVDAI 55
            V ++C+ C+   CVE+CP       E   A+  +              CP +AI
Sbjct: 2  IEVNDDCMACEA--CVEICPDVFEMNEEGDKAVVINPDSDLDCVEEAIDSCPAEAI 55


>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide,
           iron-sulfur, metal-binding, molybdopterin; HET: MGD;
           2.4A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
          Length = 195

 Score = 33.0 bits (74), Expect = 0.015
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           +     E C+ C++  CV VCP    Y+ ++ L  + P +CI CG C   CP DA     
Sbjct: 50  VVEFRPEQCLHCENPPCVPVCPTGASYQTKDGLVLVDPKKCIACGACIAACPYDARYLHP 109

Query: 60  EPGLELW 66
              +   
Sbjct: 110 AGYVSKC 116


>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking;
          HET: HEC; NMR {Desulfovibrio desulfuricans} SCOP:
          i.4.1.1
          Length = 59

 Score = 33.2 bits (75), Expect = 0.015
 Identities = 15/53 (28%), Positives = 18/53 (33%), Gaps = 5/53 (9%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIK 56
          E CI C+   CVE+CP           A                  CPV+AI 
Sbjct: 7  EECIGCES--CVELCPEVFAMIDGEEKAMVTAPDSTAECAQDAIDACPVEAIS 57



 Score = 25.9 bits (56), Expect = 2.0
 Identities = 9/24 (37%), Positives = 10/24 (41%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          I  +ECI C  C   CP      D
Sbjct: 4  IDHEECIGCESCVELCPEVFAMID 27


>1dax_A Ferredoxin I; electron transport, electron-transfer protein,
          4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP:
          d.58.1.4 PDB: 1dfd_A 1fxr_A
          Length = 64

 Score = 33.1 bits (75), Expect = 0.016
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 6/58 (10%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLA----IHPDECIDCGVCEPECPVDAIK 56
          YV  + CI C+   CVE+ P     + E   A    +      +       CPV  I 
Sbjct: 5  YVDQDECIACES--CVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIH 60


>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate
           dehydrogenase, selenocysteine, molybdopterin, MGD,
           iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A
           {Desulfovibrio gigas} SCOP: d.58.1.5
          Length = 214

 Score = 32.9 bits (74), Expect = 0.018
 Identities = 9/68 (13%), Positives = 14/68 (20%), Gaps = 7/68 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECPVDA 54
                + C  C    C     ++           G         +  D       CP D 
Sbjct: 65  WLFFPDQCRHCIAPPCKATADMEDESAIIHDDATGCVLFTPKTKDLEDYESVISACPYDV 124

Query: 55  IKPDTEPG 62
            +   E  
Sbjct: 125 PRKVAESN 132


>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga
          maritima} SCOP: d.58.1.4 PDB: 1vjw_A
          Length = 60

 Score = 32.1 bits (72), Expect = 0.028
 Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 4/56 (7%)

Query: 3  YVVTENCILCKHTDCVEVCP--VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V  + CI C    C  +CP       +G+  +     +          CP  AI 
Sbjct: 4  RVDADACIGCGV--CENLCPDVFQLGDDGKAKVLQPETDLPCAKDAADSCPTGAIS 57



 Score = 24.4 bits (52), Expect = 5.8
 Identities = 11/24 (45%), Positives = 12/24 (50%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          +  D CI CGVCE  CP      D
Sbjct: 5  VDADACIGCGVCENLCPDVFQLGD 28


>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis,
          geometry of [4Fe-4S] cluster, electron transport; 0.92A
          {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB:
          1ir0_A 1wtf_A*
          Length = 81

 Score = 31.1 bits (70), Expect = 0.065
 Identities = 19/72 (26%), Positives = 24/72 (33%), Gaps = 15/72 (20%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA------------IHPDECIDCGVCEPE 49
          T V  E CI C    C    P D +   E+ +A            +      D       
Sbjct: 4  TIVDKETCIACGA--CGAAAP-DIYDYDEDGIAYVTLDDNQGIVEVPDILIDDMMDAFEG 60

Query: 50 CPVDAIKPDTEP 61
          CP D+IK   EP
Sbjct: 61 CPTDSIKVADEP 72


>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding
           enzyme, MGD-cofactors, DMSO-reductase family,
           4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter
           acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B*
           1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
          Length = 274

 Score = 29.7 bits (66), Expect = 0.15
 Identities = 9/61 (14%), Positives = 19/61 (31%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
                  C+ C++  CV       +   +  + I P++          CP   +  + E 
Sbjct: 61  INYRPTPCMHCENAPCVAKGNGAVYQREDGIVLIDPEKAKGKKELLDTCPYGVMYWNEEE 120

Query: 62  G 62
            
Sbjct: 121 N 121


>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine
          cobalt(III), electron transport; HET: NCO; 1.50A
          {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A*
          2z8q_A
          Length = 66

 Score = 29.7 bits (66), Expect = 0.17
 Identities = 12/59 (20%), Positives = 15/59 (25%), Gaps = 8/59 (13%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLA------IHPDECIDCGVCEPECPVDAIK 56
          V  + CI      C  +CP       E             +           CPV AI 
Sbjct: 6  VDQDTCIGDAI--CASLCPDVFEMNDEGKAQPKVEVIEDEELYNCAKEAMEACPVSAIT 62



 Score = 26.3 bits (57), Expect = 1.9
 Identities = 7/24 (29%), Positives = 9/24 (37%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          +  D CI   +C   CP      D
Sbjct: 6  VDQDTCIGDAICASLCPDVFEMND 29


>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit));
          X-RAY crystallography, hydrogene metabolism, periplasm;
          1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1
          d.58.1.5 PDB: 1e08_A* 1gx7_A*
          Length = 421

 Score = 28.7 bits (64), Expect = 0.32
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 9  CILCKHTDCVEVCP-VDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
          CI C    C + CP    F E GE     H + CI+CG C   CP +AI
Sbjct: 35 CIGCDT--CSQYCPTAAIFGEMGEPHSIPHIEACINCGQCLTHCPENAI 81



 Score = 26.8 bits (59), Expect = 1.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 31 NFLAIHPDECIDCGVCEPECPVDAI 55
          +F+ I   +CI C  C   CP  AI
Sbjct: 26 HFVQIDEAKCIGCDTCSQYCPTAAI 50


>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
          transcription factor, DNA-binding, DNA-directed RNA
          polymerase; 4.30A {Saccharomyces cerevisiae}
          Length = 197

 Score = 26.4 bits (58), Expect = 1.7
 Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 10/40 (25%)

Query: 20 VCPVDCFYEGENFLAIHPDE------CIDCGVCEPECPVD 53
           CP +C         I          C  CG+   +  VD
Sbjct: 23 TCP-EC---KVYPPKIVERFSEGDVVCALCGLVLSDKLVD 58


>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle
          regulation, NYSGXRC, structural genomics, protein
          structure initiative; 2.30A {Bacillus subtilis} SCOP:
          d.13.1.1
          Length = 145

 Score = 26.0 bits (56), Expect = 1.9
 Identities = 13/45 (28%), Positives = 15/45 (33%), Gaps = 2/45 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
          ENCI CK        P    YE E+ LA      +  G       
Sbjct: 5  ENCIFCKIIAGDI--PSAKVYEDEHVLAFLDISQVTKGHTLVIPK 47


>3oj7_A Putative histidine triad family protein; hydrolase, structural
          genomics, seattle structural genomics for infectious
          disease, ssgcid; 1.40A {Entamoeba histolytica} PDB:
          3omf_A*
          Length = 117

 Score = 26.1 bits (57), Expect = 2.0
 Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 2/31 (6%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIH 36
           ++CI CK        P    YE +   A  
Sbjct: 6  ADSCIFCKIAQKQI--PSTIVYEDDEIFAFK 34


>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
           receptor/immune system complex; 3.80A {Homo sapiens}
           SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
          Length = 897

 Score = 26.0 bits (56), Expect = 2.2
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 6/50 (12%)

Query: 7   ENCILCKH----TDCVEVCPVDCFYEGENFLAIHPDECIDC-GVCEPECP 51
             C+ C++      CVE CP   +Y  +++  ++   C D    C+    
Sbjct: 223 TKCVACRNFYLDGRCVETCP-PPYYHFQDWRCVNFSFCQDLHHKCKNSRR 271


>1xqu_A HIT family hydrolase; protein structure initiative, PSI,
          southeast collaboratory for structural genomics, secsg;
          2.30A {Clostridium thermocellum} SCOP: d.13.1.1
          Length = 147

 Score = 25.9 bits (56), Expect = 2.4
 Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 2/31 (6%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHP 37
          ENC+ CK        P   +YE E  +AI  
Sbjct: 35 ENCVFCKIIKREL--PSTIYYEDERVIAIKD 63


>2wmi_A Fucolectin-related protein; glycoside hydrolase, hydrolase, fucose
           utilization, blood group antigen; HET: A2G GAL FUC;
           1.90A {Streptococcus pneumoniae} PDB: 2wmj_A* 2wmk_A*
           2wmi_B*
          Length = 606

 Score = 25.7 bits (56), Expect = 2.7
 Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 4/38 (10%)

Query: 68  KINSEYATQWPNITTKKESL----PSAAKMDGVKQKYE 101
           +I    + ++ +   +KE L    P   + D   QK +
Sbjct: 415 QIKEITSPEFSSTQARKEYLNKLYPMNYEGDIFAQKLD 452


>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP,
           cyclic nucleotide, regulation, auto-inhibition, CDC25
           homology domain; 2.7A {Mus musculus}
          Length = 999

 Score = 25.5 bits (55), Expect = 2.9
 Identities = 6/30 (20%), Positives = 8/30 (26%)

Query: 25  CFYEGENFLAIHPDECIDCGVCEPECPVDA 54
             Y+ E F  +H  E I             
Sbjct: 769 TTYDWELFNCVHELELIYHTFGRHNFKKTT 798


>3ksv_A Uncharacterized protein; HIT family, structural genomics,
          structural genomics of pathogenic protozoa consortium,
          SGPP; 1.90A {Leishmania major}
          Length = 149

 Score = 25.5 bits (55), Expect = 2.9
 Identities = 9/32 (28%), Positives = 9/32 (28%), Gaps = 2/32 (6%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHP 37
            NCI CK        P     E    LA   
Sbjct: 10 AANCIFCKIIKGDI--PCAKVAETSKALAFMD 39


>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
           transferase/growth factor complex; HET: NAG FUC BMA MAN;
           2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
           g.3.9.1
          Length = 501

 Score = 25.4 bits (55), Expect = 3.5
 Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 16/61 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIH----------PDECIDC------GVCEPEC 50
           ENC       C + C   C  +  +    +            +C+ C        C+  C
Sbjct: 181 ENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTC 240

Query: 51  P 51
           P
Sbjct: 241 P 241


>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
           transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
           sapiens}
          Length = 486

 Score = 25.1 bits (54), Expect = 3.5
 Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 4/48 (8%)

Query: 8   NCILCKH----TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
            C+ C++      CVE CP   ++  +               C+    
Sbjct: 224 KCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRR 271


>3imi_A HIT family protein; structural genomics, infectious diseases,
          center for structural genomics of infectious diseases,
          unknown function; 2.01A {Bacillus anthracis str}
          Length = 147

 Score = 25.2 bits (54), Expect = 3.8
 Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 2/41 (4%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVC 46
           +NCI CK  D          YE E+ LA      +  G  
Sbjct: 8  ADNCIFCKIIDGQI--LCSKVYEDEHVLAFLDISQVTKGHT 46


>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS
          guanine nucleotide releasing factor, RAS-specific
          nucleotide exchange factor; 2.20A {Mus musculus}
          Length = 240

 Score = 25.0 bits (54), Expect = 4.0
 Identities = 5/26 (19%), Positives = 9/26 (34%)

Query: 25 CFYEGENFLAIHPDECIDCGVCEPEC 50
             +   F +I  +E    G  + E 
Sbjct: 14 TLLDHLVFKSIPYEEFFGQGWMKAEK 39


>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease
           mutation, guanine-nucleotide releasing factor, signaling
           protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
          Length = 1049

 Score = 25.0 bits (54), Expect = 4.5
 Identities = 4/30 (13%), Positives = 13/30 (43%)

Query: 25  CFYEGENFLAIHPDECIDCGVCEPECPVDA 54
              E + + A+ P E +     + +  +++
Sbjct: 789 TLLESDLYRAVQPSELVGSVWTKEDKEINS 818


>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald
          biostructures, hydrola structural genomics; HET: AMP;
          1.90A {Mycobacterium smegmatis str}
          Length = 149

 Score = 24.6 bits (53), Expect = 5.1
 Identities = 11/37 (29%), Positives = 13/37 (35%), Gaps = 2/37 (5%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG 44
          +C+ C         P    YE ENFL I        G
Sbjct: 6  SCVFCAIVSGDA--PAIRIYEDENFLGILDIRPFTRG 40


>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger,
           transcription activator; 3.00A {Escherichia coli} SCOP:
           e.64.1.1
          Length = 192

 Score = 24.8 bits (54), Expect = 5.2
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIKP 57
           +T    L +  +   +    C   G NF+  A  P     C +C+P  P  A+K 
Sbjct: 117 LTRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQP--PSRAVKR 169


>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural
           genomics, PSI, protein structure initiative; HET: MSE;
           2.00A {Escherichia coli K12} SCOP: d.113.1.2
          Length = 180

 Score = 24.7 bits (53), Expect = 5.3
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 6/64 (9%)

Query: 13  KHTDCVEVCPV-DCFYEGENFLAIHPDECIDCGVCEPE---CPVDAIKPDTEPGLELWLK 68
           +  +C     +  C   G    A+  DE  +     PE      D   PD+   L LW+K
Sbjct: 109 EDKNCRVWGALFSCVSHGP--FALQEDEVSEVCWLTPEEITARCDEFTPDSLKALALWMK 166

Query: 69  INSE 72
            N++
Sbjct: 167 RNAK 170


>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4,
           CAMP, SP-camps, GEF, gunanine nucleotide exchange
           factor, G-protein, GTP-binding, nucleotide-binding; HET:
           SP1; 2.20A {Mus musculus}
          Length = 694

 Score = 24.3 bits (52), Expect = 7.2
 Identities = 6/30 (20%), Positives = 8/30 (26%)

Query: 25  CFYEGENFLAIHPDECIDCGVCEPECPVDA 54
             Y+ E F  +H  E I             
Sbjct: 464 TTYDWELFNCVHELELIYHTFGRHNFKKTT 493


>3lb5_A HIT-like protein involved in cell-cycle regulation; niaid,
          seattle structural genomics center for infectious
          disease, ssgcid; 1.90A {Bartonella henselae}
          Length = 161

 Score = 24.3 bits (52), Expect = 7.6
 Identities = 8/36 (22%), Positives = 11/36 (30%), Gaps = 2/36 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH 36
          M      N I  K        P    YE ++ +A  
Sbjct: 22 MKQAYDNNNIFAKLIRNEI--PSVRVYEDDDVIAFM 55


>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp,
          DNA processing, FEN1, PIP- BOX, replication; 1.88A
          {Homo sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A
          1axc_A 1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A*
          2zvm_A*
          Length = 261

 Score = 23.9 bits (51), Expect = 8.3
 Identities = 8/44 (18%), Positives = 15/44 (34%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV 45
           + ++ + +  +  D   V  V      E F     D  +  GV
Sbjct: 27 CWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGV 70


>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo
           sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S*
           1nvw_S* 1nvx_S* 1bkd_S
          Length = 490

 Score = 24.0 bits (51), Expect = 8.9
 Identities = 5/39 (12%), Positives = 16/39 (41%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
             +E+       E + + A+ P E +     + +  +++
Sbjct: 221 HPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINS 259


>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
          amidotransferase, ammonia assimilation, FMN, FAD, iron,
          3Fe-4S, 4Fe-4S, zymogen; HET: OMT FMN AKG FAD; 9.50A
          {Azospirillum brasilense}
          Length = 456

 Score = 23.9 bits (51), Expect = 9.0
 Identities = 6/17 (35%), Positives = 6/17 (35%)

Query: 9  CILCKHTDCVEVCPVDC 25
          C  C    C   CPV  
Sbjct: 22 CSQCGVPFCQVHCPVSN 38


>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA
          binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii}
          SCOP: d.131.1.2 d.131.1.2
          Length = 245

 Score = 23.9 bits (51), Expect = 9.0
 Identities = 6/44 (13%), Positives = 10/44 (22%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV 45
           + +    I     D   +  +      E F      E    G 
Sbjct: 26 LFDIKPEGIQLVAIDKAHISLIKIELPKEMFKEYDVPEEFKFGF 69


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.317    0.136    0.453 

Gapped
Lambda     K      H
   0.267   0.0516    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,033,600
Number of extensions: 45012
Number of successful extensions: 331
Number of sequences better than 10.0: 1
Number of HSP's gapped: 269
Number of HSP's successfully gapped: 127
Length of query: 113
Length of database: 5,693,230
Length adjustment: 76
Effective length of query: 37
Effective length of database: 3,850,686
Effective search space: 142475382
Effective search space used: 142475382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.5 bits)