RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780416|ref|YP_003064829.1| putative ferredoxin protein [Candidatus Liberibacter asiaticus str. psy62] (113 letters) >7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ... Length = 106 Score = 92.5 bits (229), Expect = 2e-20 Identities = 61/101 (60%), Positives = 75/101 (74%), Gaps = 2/101 (1%) Query: 3 YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT--E 60 +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP AI + Sbjct: 2 FVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEVP 61 Query: 61 PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101 ++ ++++N+E A WPNIT KK+ LP A DGVK K + Sbjct: 62 EDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQ 102 >2v2k_A Ferredoxin; iron, 3Fe-4S, 4Fe-4S, transport, iron-sulfur, mycobacterium tuberculosis, Fe-S cluster, metal-binding, electron transfer; 1.6A {Mycobacterium smegmatis} Length = 105 Score = 81.3 bits (200), Expect = 5e-17 Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 5/105 (4%) Query: 2 TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60 TYV+ E C+ K C+E CPVDC YEG L IHPDEC+DCG CEP CPV+AI + + Sbjct: 1 TYVIAEPCVDVKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDDV 60 Query: 61 -PGLELWLKINSEYATQWPN---ITTKKESLPSAAKMDGVKQKYE 101 + + N+++ + + + ++ + + + E Sbjct: 61 PDQWSSYAQANADFFAELGSPGGASKVGQTDNDPQAIKDLPPQGE 105 >1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2 Length = 78 Score = 73.9 bits (181), Expect = 8e-15 Identities = 35/74 (47%), Positives = 47/74 (63%), Gaps = 2/74 (2%) Query: 3 YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--DTE 60 +V+ E CI K CVEVCPV+C Y+G + IHP+ECIDCG C P CPV+AI P D Sbjct: 2 HVICEPCIGVKDQSCVEVCPVECIYDGGDQFYIHPEECIDCGACVPACPVNAIYPEEDVP 61 Query: 61 PGLELWLKINSEYA 74 + +++ N + A Sbjct: 62 EQWKSYIEKNRKLA 75 >1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A Length = 77 Score = 72.0 bits (176), Expect = 3e-14 Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 2/76 (2%) Query: 3 YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE-- 60 YV+TE CI K CVEVCPVDC +EGE+ I PD CIDCG CE CPV AI + Sbjct: 2 YVITEPCIGTKDASCVEVCPVDCIHEGEDQYYIDPDVCIDCGACEAVCPVSAIYHEDFVP 61 Query: 61 PGLELWLKINSEYATQ 76 + +++ N ++ + Sbjct: 62 EEWKSYIQKNRDFFKK 77 >2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A Length = 55 Score = 57.7 bits (139), Expect = 6e-10 Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Query: 3 YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55 YV+ E CI C C CPV+ G++ I D CIDCG C CPVDA Sbjct: 2 YVINEACISCGA--CEPECPVNAISSGDDRYVIDADTCIDCGACAGVCPVDAP 52 Score = 29.2 bits (65), Expect = 0.23 Identities = 13/24 (54%), Positives = 16/24 (66%) Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58 + + CI CG CEPECPV+AI Sbjct: 3 VINEACISCGACEPECPVNAISSG 26 >3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} Length = 166 Score = 53.9 bits (129), Expect = 9e-09 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 6/62 (9%) Query: 2 TYVVTENCILCKHTD---CVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAI 55 TYV C CK + C+ +CP D E P+ C +C C CP AI Sbjct: 2 TYVDPSKCDGCKGGEKTACMYICPNDLMILDPEEMKAFNQEPEACWECYSCIKICPQGAI 61 Query: 56 KP 57 Sbjct: 62 TA 63 Score = 27.7 bits (61), Expect = 0.70 Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 5/33 (15%) Query: 35 IHPDECIDC-----GVCEPECPVDAIKPDTEPG 62 + P +C C C CP D + D E Sbjct: 4 VDPSKCDGCKGGEKTACMYICPNDLMILDPEEM 36 >1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 2o01_C* Length = 80 Score = 49.0 bits (116), Expect = 3e-07 Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 10/78 (12%) Query: 4 VVTENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPVDAI 55 + + CI C CV CP D G+ + ++C+ C CE CP D + Sbjct: 5 KIYDTCIGCTQ--CVRACPTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFL 62 Query: 56 KPDTEPGLELWLKINSEY 73 G E + Y Sbjct: 63 SIRVYLGAETTRSMGLAY 80 >1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* Length = 512 Score = 46.6 bits (110), Expect = 1e-06 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 2 TYVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDT 59 + C C + CV CP Y+ E + I D+C +C CP I + Sbjct: 177 MMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNW 236 Query: 60 EPG 62 + G Sbjct: 237 KSG 239 Score = 26.6 bits (58), Expect = 1.4 Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 2/34 (5%) Query: 32 FLAIHPDECIDCGV--CEPECPVDAIKPDTEPGL 63 F+ P C C C CP AI E G+ Sbjct: 176 FMMYLPRLCEHCLNPACVATCPSGAIYKREEDGI 209 Score = 23.9 bits (51), Expect = 8.6 Identities = 6/26 (23%), Positives = 11/26 (42%) Query: 33 LAIHPDECIDCGVCEPECPVDAIKPD 58 + ++ D+CI C C C + Sbjct: 9 MVLNLDKCIGCHTCSVTCKNVWTSRE 34 Score = 23.9 bits (51), Expect = 8.9 Identities = 10/33 (30%), Positives = 11/33 (33%), Gaps = 7/33 (21%) Query: 5 VTENCILCKH-------TDCVEVCPVDCFYEGE 30 +E CI C T C E C Y G Sbjct: 240 KSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGV 272 >2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron- sulfur clusters, reduction potential; 1.65A {Escherichia coli k-12} Length = 85 Score = 45.5 bits (107), Expect = 3e-06 Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 8/78 (10%) Query: 3 YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDAIK 56 ++T+ CI C C CP + G++ I+ D+C +C C+ CP+ Sbjct: 2 LLITKKCINCD--MCEPECPNEAISMGDHIYEINSDKCTECVGHYETPTCQKVCPIPNTI 59 Query: 57 PDTEPGLELWLKINSEYA 74 +E ++ ++ Sbjct: 60 VKDPAHVETEEQLWDKFV 77 >3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* Length = 386 Score = 44.6 bits (105), Expect = 6e-06 Identities = 13/65 (20%), Positives = 24/65 (36%) Query: 3 YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62 + T V+ + + +AI+ D C+ CG C CP + T G Sbjct: 221 LCEIPLAVAACPTAAVKPITAEVNGQKVKSVAINNDRCMYCGNCYTMCPALPLSDGTGDG 280 Query: 63 LELWL 67 + + + Sbjct: 281 IAIMV 285 Score = 25.0 bits (54), Expect = 4.6 Identities = 14/58 (24%), Positives = 18/58 (31%), Gaps = 5/58 (8%) Query: 7 ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCE-----PECPVDAIKPDT 59 + C C V D G + D +CE CP A+KP T Sbjct: 183 RVSLACCINMCGAVHCSDIGLVGIHRKPPMIDHENLAELCEIPLAVAACPTAAVKPIT 240 >2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- bismgd enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Azoarcus SP} Length = 352 Score = 42.5 bits (99), Expect = 2e-05 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 2/63 (3%) Query: 3 YVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60 + + C C + C+ CP Y E + + + C C CP AI + Sbjct: 145 FYLARMCNHCTNPACLAACPTGAIYKREDNGIVLVDQERCKGHRHCVEACPYKAIYFNPV 204 Query: 61 PGL 63 Sbjct: 205 SQT 207 >1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica K172} SCOP: d.58.1.1 Length = 80 Score = 42.1 bits (98), Expect = 3e-05 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 8/64 (12%) Query: 3 YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDAIK 56 + ++C C CVE CP + G+ I P +C +C C CP D I Sbjct: 2 LYINDDCTACDA--CVEECPNEAITPGDPIYVIDPTKCSECVGAFDEPQCRLVCPADCIP 59 Query: 57 PDTE 60 + + Sbjct: 60 DNPD 63 >1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B* Length = 150 Score = 41.8 bits (97), Expect = 4e-05 Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 6/58 (10%) Query: 2 TYVVTENCILCKH---TDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVD 53 ++V E C CK T C +CP D E PD C +C C CP Sbjct: 3 SFVNPEKCDGCKALERTACEYICPNDLMTLDKEKMKAYNREPDMCWECYSCVKMCPQG 60 Score = 26.4 bits (57), Expect = 1.8 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 5/33 (15%) Query: 35 IHPDECIDCG-----VCEPECPVDAIKPDTEPG 62 ++P++C C CE CP D + D E Sbjct: 5 VNPEKCDGCKALERTACEYICPNDLMTLDKEKM 37 >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} Length = 607 Score = 41.5 bits (97), Expect = 4e-05 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 7/52 (13%) Query: 12 CKHTDCVEVCPV-----DCF-YEGENFLA-IHPDECIDCGVCEPECPVDAIK 56 C H C VCPV + + EN+ I C CG+C +CP +AI Sbjct: 34 CGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHKCPFNAIS 85 >3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B* Length = 366 Score = 41.2 bits (96), Expect = 6e-05 Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 2/61 (3%) Query: 9 CILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66 C+ V CP + + ++C+ CG C CP + G + Sbjct: 208 RKTCEIPSTVAACPTGALKPDMKNKTIKVDVEKCMYCGNCYTMCPGMPLFDPENDGAAIM 267 Query: 67 L 67 + Sbjct: 268 V 268 >3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} PDB: 1blu_A 3exy_A Length = 82 Score = 41.0 bits (95), Expect = 6e-05 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 8/65 (12%) Query: 3 YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDAIK 56 ++T+ CI C C CP +G+ I P C +C C CPVDAI Sbjct: 2 LMITDECINCDV--CEPECPNGAISQGDETYVIEPSLCTECVGHYETSQCVEVCPVDAII 59 Query: 57 PDTEP 61 D Sbjct: 60 KDPSH 64 >2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa} Length = 82 Score = 40.9 bits (95), Expect = 6e-05 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 8/62 (12%) Query: 5 VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDAIKPD 58 +T++CI C C CP +GE I P+ C +C C+ CPVD I D Sbjct: 4 ITDDCINCDV--CEPECPNGAISQGEEIYVIDPNLCTECVGHYDEPQCQQVCPVDCIPLD 61 Query: 59 TE 60 Sbjct: 62 DA 63 >1kqf_B FDH-N beta, formate dehydrogenase, nitrate-inducible, iron- sulfur subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B* Length = 294 Score = 40.6 bits (94), Expect = 1e-04 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 2/62 (3%) Query: 3 YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTE 60 + + C+ C+ C++ CP + CI CG C CP + + + E Sbjct: 94 LIRKDGCMHCEDPGCLKACPSAGAIIQYANGIVDFQSENCIGCGYCIAGCPFNIPRLNKE 153 Query: 61 PG 62 Sbjct: 154 DN 155 >2v4j_B Sulfite reductase, dissimilatory-type subunit beta; dissimilatory sulfite reductase, complex, siroheme, oxidoreductase; HET: SRM; 2.10A {Desulfovibrio vulgaris} SCOP: d.58.1.5 d.58.36.2 d.134.1.1 Length = 381 Score = 38.9 bits (90), Expect = 3e-04 Identities = 13/60 (21%), Positives = 23/60 (38%) Query: 8 NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67 + T V ++ + N +AI + C+ CG C CP I G+ + + Sbjct: 226 LAVASCPTAAVRPTKLEIGDKKVNTIAIKNERCMYCGNCYTMCPALPISDGEGDGVVIMV 285 >3c7b_B Sulfite reductase, dissimilatory-type subunit beta; alpha/beta fold, 4Fe-4S, heme, iron, iron-sulfur, membrane, metal-binding; HET: SRM; 2.00A {Archaeoglobus fulgidus} SCOP: d.58.1.5 d.58.36.2 d.134.1.1 Length = 366 Score = 38.1 bits (88), Expect = 5e-04 Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 2/61 (3%) Query: 9 CILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66 C+ V CP + + ++C+ CG C CP + G + Sbjct: 208 RKTCEIPSTVAACPTGALKPDMKNKTIKVDVEKCMYCGNCYTMCPGMPLFDPENDGAAIM 267 Query: 67 L 67 + Sbjct: 268 V 268 >3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A* Length = 418 Score = 38.1 bits (88), Expect = 5e-04 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67 + V++CP L I EC+ C C + P A+KP E G + + Sbjct: 261 NEVVKLCPTGAIKWDGKELTIDNRECVRCMHCINKMP-KALKPGDERGATILI 312 >2v4j_A Sulfite reductase, dissimilatory-type subunit alpha; dissimilatory sulfite reductase, complex, siroheme, oxidoreductase; HET: SRM; 2.10A {Desulfovibrio vulgaris} SCOP: d.58.1.5 d.58.36.2 d.134.1.1 Length = 437 Score = 36.8 bits (85), Expect = 0.001 Identities = 12/46 (26%), Positives = 16/46 (34%) Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60 + V CP C + L+I EC+ C C P D Sbjct: 278 AEVVNRCPSKCMKWDGSKLSIDNKECVRCMHCINTMPRALHIGDER 323 >2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* Length = 1231 Score = 36.9 bits (85), Expect = 0.001 Identities = 25/106 (23%), Positives = 35/106 (33%), Gaps = 33/106 (31%) Query: 4 VVTENCILCKHTDCVEVCPVDCF--------------------------YEGENF-LAIH 36 V ENCI C C VCP +G F + I+ Sbjct: 683 WVPENCIQCN--QCAFVCPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYKFRIQIN 740 Query: 37 PDECIDCGVCEPECPV--DAIK-PDTEPGLELWLKINSEYATQWPN 79 +C+ CG C CP A+ + + + N EYA + P Sbjct: 741 TLDCMGCGNCADICPPKEKALVMQPLDTQRDAQVP-NLEYAARIPV 785 >3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_9* 3iam_9* 3ias_9* Length = 182 Score = 36.7 bits (84), Expect = 0.001 Identities = 14/58 (24%), Positives = 19/58 (32%) Query: 4 VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61 I + + PV I+ CI CG+CE CP AI + Sbjct: 62 ACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAIVLGYDF 119 >3c7b_A Sulfite reductase, dissimilatory-type subunit alpha; alpha/beta fold, 4Fe-4S, heme, iron, iron-sulfur, membrane, metal-binding; HET: SRM; 2.00A {Archaeoglobus fulgidus} SCOP: d.58.1.5 d.58.36.2 d.134.1.1 Length = 417 Score = 36.4 bits (84), Expect = 0.001 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%) Query: 8 NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67 + + V++CP L I EC+ C C + P A+KP E G + + Sbjct: 253 ASWMDIENEVVKLCPTGAIKWDGKELTIDNRECVRCMHCINKMP-KALKPGDERGATILI 311 >1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A Length = 103 Score = 35.6 bits (81), Expect = 0.003 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 11/59 (18%) Query: 7 ENCILCKHTDCVEVCPVDCFYEGENF---------LAIHPDECIDCGVCEPECPVDAIK 56 + CI C+ CPV+ F + ++ CI C C CPV AI Sbjct: 43 DLCIADGS--CINACPVNVFQWYDTPGHPASEKKADPVNEQACIFCMACVNVCPVAAID 99 Score = 30.2 bits (67), Expect = 0.10 Identities = 10/32 (31%), Positives = 14/32 (43%) Query: 31 NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62 + + D CI G C CPV+ + PG Sbjct: 36 TIVGVDFDLCIADGSCINACPVNVFQWYDTPG 67 >3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* Length = 437 Score = 35.0 bits (80), Expect = 0.005 Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 1/56 (1%) Query: 11 LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66 + V +CP C L+I C C C P A+K E G + Sbjct: 274 FDIEAEVVGLCPTGCMTYESGTLSIDNKNCTRCMHCINTMPR-ALKIGDERGASIL 328 >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025 Score = 34.6 bits (79), Expect = 0.006 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 9/56 (16%) Query: 7 ENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPV-DAIK 56 E CI C C C D Y+ E L D C C +C CP+ D I+ Sbjct: 951 EMCINCGK--CYMTCN-DSGYQAIQFDPETHLPTVTDTCTGCTLCLSVCPIIDCIR 1003 Score = 27.7 bits (61), Expect = 0.70 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 3/29 (10%) Query: 35 IHPDECIDCGVCEPEC---PVDAIKPDTE 60 I + CI+CG C C AI+ D E Sbjct: 948 IDEEMCINCGKCYMTCNDSGYQAIQFDPE 976 >1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A Length = 58 Score = 34.4 bits (78), Expect = 0.006 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 5/56 (8%) Query: 3 YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE---CIDCGVCEPECPVDAI 55 V ++C+ C+ CVE+CP E A+ + CP +AI Sbjct: 2 IEVNDDCMACEA--CVEICPDVFEMNEEGDKAVVINPDSDLDCVEEAIDSCPAEAI 55 >2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.4A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B* Length = 195 Score = 33.0 bits (74), Expect = 0.015 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 1 MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59 + E C+ C++ CV VCP Y+ ++ L + P +CI CG C CP DA Sbjct: 50 VVEFRPEQCLHCENPPCVPVCPTGASYQTKDGLVLVDPKKCIACGACIAACPYDARYLHP 109 Query: 60 EPGLELW 66 + Sbjct: 110 AGYVSKC 116 >1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfovibrio desulfuricans} SCOP: i.4.1.1 Length = 59 Score = 33.2 bits (75), Expect = 0.015 Identities = 15/53 (28%), Positives = 18/53 (33%), Gaps = 5/53 (9%) Query: 7 ENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIK 56 E CI C+ CVE+CP A CPV+AI Sbjct: 7 EECIGCES--CVELCPEVFAMIDGEEKAMVTAPDSTAECAQDAIDACPVEAIS 57 Score = 25.9 bits (56), Expect = 2.0 Identities = 9/24 (37%), Positives = 10/24 (41%) Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58 I +ECI C C CP D Sbjct: 4 IDHEECIGCESCVELCPEVFAMID 27 >1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A Length = 64 Score = 33.1 bits (75), Expect = 0.016 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 6/58 (10%) Query: 3 YVVTENCILCKHTDCVEVCPVDCFYEGENFLA----IHPDECIDCGVCEPECPVDAIK 56 YV + CI C+ CVE+ P + E A + + CPV I Sbjct: 5 YVDQDECIACES--CVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIH 60 >1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5 Length = 214 Score = 32.9 bits (74), Expect = 0.018 Identities = 9/68 (13%), Positives = 14/68 (20%), Gaps = 7/68 (10%) Query: 2 TYVVTENCILCKHTDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECPVDA 54 + C C C ++ G + D CP D Sbjct: 65 WLFFPDQCRHCIAPPCKATADMEDESAIIHDDATGCVLFTPKTKDLEDYESVISACPYDV 124 Query: 55 IKPDTEPG 62 + E Sbjct: 125 PRKVAESN 132 >1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A Length = 60 Score = 32.1 bits (72), Expect = 0.028 Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 4/56 (7%) Query: 3 YVVTENCILCKHTDCVEVCP--VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56 V + CI C C +CP +G+ + + CP AI Sbjct: 4 RVDADACIGCGV--CENLCPDVFQLGDDGKAKVLQPETDLPCAKDAADSCPTGAIS 57 Score = 24.4 bits (52), Expect = 5.8 Identities = 11/24 (45%), Positives = 12/24 (50%) Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58 + D CI CGVCE CP D Sbjct: 5 VDADACIGCGVCENLCPDVFQLGD 28 >1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A* Length = 81 Score = 31.1 bits (70), Expect = 0.065 Identities = 19/72 (26%), Positives = 24/72 (33%), Gaps = 15/72 (20%) Query: 2 TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA------------IHPDECIDCGVCEPE 49 T V E CI C C P D + E+ +A + D Sbjct: 4 TIVDKETCIACGA--CGAAAP-DIYDYDEDGIAYVTLDDNQGIVEVPDILIDDMMDAFEG 60 Query: 50 CPVDAIKPDTEP 61 CP D+IK EP Sbjct: 61 CPTDSIKVADEP 72 >1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N* Length = 274 Score = 29.7 bits (66), Expect = 0.15 Identities = 9/61 (14%), Positives = 19/61 (31%) Query: 2 TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61 C+ C++ CV + + + I P++ CP + + E Sbjct: 61 INYRPTPCMHCENAPCVAKGNGAVYQREDGIVLIDPEKAKGKKELLDTCPYGVMYWNEEE 120 Query: 62 G 62 Sbjct: 121 N 121 >1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A Length = 66 Score = 29.7 bits (66), Expect = 0.17 Identities = 12/59 (20%), Positives = 15/59 (25%), Gaps = 8/59 (13%) Query: 4 VVTENCILCKHTDCVEVCPVDCFYEGENFLA------IHPDECIDCGVCEPECPVDAIK 56 V + CI C +CP E + CPV AI Sbjct: 6 VDQDTCIGDAI--CASLCPDVFEMNDEGKAQPKVEVIEDEELYNCAKEAMEACPVSAIT 62 Score = 26.3 bits (57), Expect = 1.9 Identities = 7/24 (29%), Positives = 9/24 (37%) Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58 + D CI +C CP D Sbjct: 6 VDQDTCIGDAICASLCPDVFEMND 29 >1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); X-RAY crystallography, hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A* Length = 421 Score = 28.7 bits (64), Expect = 0.32 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 4/49 (8%) Query: 9 CILCKHTDCVEVCP-VDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55 CI C C + CP F E GE H + CI+CG C CP +AI Sbjct: 35 CIGCDT--CSQYCPTAAIFGEMGEPHSIPHIEACINCGQCLTHCPENAI 81 Score = 26.8 bits (59), Expect = 1.1 Identities = 10/25 (40%), Positives = 13/25 (52%) Query: 31 NFLAIHPDECIDCGVCEPECPVDAI 55 +F+ I +CI C C CP AI Sbjct: 26 HFVQIDEAKCIGCDTCSQYCPTAAI 50 >3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197 Score = 26.4 bits (58), Expect = 1.7 Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 10/40 (25%) Query: 20 VCPVDCFYEGENFLAIHPDE------CIDCGVCEPECPVD 53 CP +C I C CG+ + VD Sbjct: 23 TCP-EC---KVYPPKIVERFSEGDVVCALCGLVLSDKLVD 58 >1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1 Length = 145 Score = 26.0 bits (56), Expect = 1.9 Identities = 13/45 (28%), Positives = 15/45 (33%), Gaps = 2/45 (4%) Query: 7 ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51 ENCI CK P YE E+ LA + G Sbjct: 5 ENCIFCKIIAGDI--PSAKVYEDEHVLAFLDISQVTKGHTLVIPK 47 >3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} PDB: 3omf_A* Length = 117 Score = 26.1 bits (57), Expect = 2.0 Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 2/31 (6%) Query: 6 TENCILCKHTDCVEVCPVDCFYEGENFLAIH 36 ++CI CK P YE + A Sbjct: 6 ADSCIFCKIAQKQI--PSTIVYEDDEIFAFK 34 >2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 Length = 897 Score = 26.0 bits (56), Expect = 2.2 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 6/50 (12%) Query: 7 ENCILCKH----TDCVEVCPVDCFYEGENFLAIHPDECIDC-GVCEPECP 51 C+ C++ CVE CP +Y +++ ++ C D C+ Sbjct: 223 TKCVACRNFYLDGRCVETCP-PPYYHFQDWRCVNFSFCQDLHHKCKNSRR 271 >1xqu_A HIT family hydrolase; protein structure initiative, PSI, southeast collaboratory for structural genomics, secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1 Length = 147 Score = 25.9 bits (56), Expect = 2.4 Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 2/31 (6%) Query: 7 ENCILCKHTDCVEVCPVDCFYEGENFLAIHP 37 ENC+ CK P +YE E +AI Sbjct: 35 ENCVFCKIIKREL--PSTIYYEDERVIAIKD 63 >2wmi_A Fucolectin-related protein; glycoside hydrolase, hydrolase, fucose utilization, blood group antigen; HET: A2G GAL FUC; 1.90A {Streptococcus pneumoniae} PDB: 2wmj_A* 2wmk_A* 2wmi_B* Length = 606 Score = 25.7 bits (56), Expect = 2.7 Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 4/38 (10%) Query: 68 KINSEYATQWPNITTKKESL----PSAAKMDGVKQKYE 101 +I + ++ + +KE L P + D QK + Sbjct: 415 QIKEITSPEFSSTQARKEYLNKLYPMNYEGDIFAQKLD 452 >2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP, cyclic nucleotide, regulation, auto-inhibition, CDC25 homology domain; 2.7A {Mus musculus} Length = 999 Score = 25.5 bits (55), Expect = 2.9 Identities = 6/30 (20%), Positives = 8/30 (26%) Query: 25 CFYEGENFLAIHPDECIDCGVCEPECPVDA 54 Y+ E F +H E I Sbjct: 769 TTYDWELFNCVHELELIYHTFGRHNFKKTT 798 >3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of pathogenic protozoa consortium, SGPP; 1.90A {Leishmania major} Length = 149 Score = 25.5 bits (55), Expect = 2.9 Identities = 9/32 (28%), Positives = 9/32 (28%), Gaps = 2/32 (6%) Query: 6 TENCILCKHTDCVEVCPVDCFYEGENFLAIHP 37 NCI CK P E LA Sbjct: 10 AANCIFCKIIKGDI--PCAKVAETSKALAFMD 39 >1mox_A Epidermal growth factor receptor; EGFR, receptor, complex, transferase/growth factor complex; HET: NAG FUC BMA MAN; 2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 Length = 501 Score = 25.4 bits (55), Expect = 3.5 Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 16/61 (26%) Query: 7 ENCILCKHTDCVEVCPVDCFYEGENFLAIH----------PDECIDC------GVCEPEC 50 ENC C + C C + + + +C+ C C+ C Sbjct: 181 ENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTC 240 Query: 51 P 51 P Sbjct: 241 P 241 >2hr7_A Insulin receptor; hormone receptor, leucine rich repeat, transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo sapiens} Length = 486 Score = 25.1 bits (54), Expect = 3.5 Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 4/48 (8%) Query: 8 NCILCKH----TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51 C+ C++ CVE CP ++ + C+ Sbjct: 224 KCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRR 271 >3imi_A HIT family protein; structural genomics, infectious diseases, center for structural genomics of infectious diseases, unknown function; 2.01A {Bacillus anthracis str} Length = 147 Score = 25.2 bits (54), Expect = 3.8 Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 2/41 (4%) Query: 6 TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVC 46 +NCI CK D YE E+ LA + G Sbjct: 8 ADNCIFCKIIDGQI--LCSKVYEDEHVLAFLDISQVTKGHT 46 >2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing factor, RAS-specific nucleotide exchange factor; 2.20A {Mus musculus} Length = 240 Score = 25.0 bits (54), Expect = 4.0 Identities = 5/26 (19%), Positives = 9/26 (34%) Query: 25 CFYEGENFLAIHPDECIDCGVCEPEC 50 + F +I +E G + E Sbjct: 14 TLLDHLVFKSIPYEEFFGQGWMKAEK 39 >3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Length = 1049 Score = 25.0 bits (54), Expect = 4.5 Identities = 4/30 (13%), Positives = 13/30 (43%) Query: 25 CFYEGENFLAIHPDECIDCGVCEPECPVDA 54 E + + A+ P E + + + +++ Sbjct: 789 TLLESDLYRAVQPSELVGSVWTKEDKEINS 818 >3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str} Length = 149 Score = 24.6 bits (53), Expect = 5.1 Identities = 11/37 (29%), Positives = 13/37 (35%), Gaps = 2/37 (5%) Query: 8 NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG 44 +C+ C P YE ENFL I G Sbjct: 6 SCVFCAIVSGDA--PAIRIYEDENFLGILDIRPFTRG 40 >2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1 Length = 192 Score = 24.8 bits (54), Expect = 5.2 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 4/55 (7%) Query: 5 VTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIKP 57 +T L + + + C G NF+ A P C +C+P P A+K Sbjct: 117 LTRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQP--PSRAVKR 169 >2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, PSI, protein structure initiative; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 Length = 180 Score = 24.7 bits (53), Expect = 5.3 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 6/64 (9%) Query: 13 KHTDCVEVCPV-DCFYEGENFLAIHPDECIDCGVCEPE---CPVDAIKPDTEPGLELWLK 68 + +C + C G A+ DE + PE D PD+ L LW+K Sbjct: 109 EDKNCRVWGALFSCVSHGP--FALQEDEVSEVCWLTPEEITARCDEFTPDSLKALALWMK 166 Query: 69 INSE 72 N++ Sbjct: 167 RNAK 170 >3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Length = 694 Score = 24.3 bits (52), Expect = 7.2 Identities = 6/30 (20%), Positives = 8/30 (26%) Query: 25 CFYEGENFLAIHPDECIDCGVCEPECPVDA 54 Y+ E F +H E I Sbjct: 464 TTYDWELFNCVHELELIYHTFGRHNFKKTT 493 >3lb5_A HIT-like protein involved in cell-cycle regulation; niaid, seattle structural genomics center for infectious disease, ssgcid; 1.90A {Bartonella henselae} Length = 161 Score = 24.3 bits (52), Expect = 7.6 Identities = 8/36 (22%), Positives = 11/36 (30%), Gaps = 2/36 (5%) Query: 1 MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH 36 M N I K P YE ++ +A Sbjct: 22 MKQAYDNNNIFAKLIRNEI--PSVRVYEDDDVIAFM 55 >1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A 1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A* Length = 261 Score = 23.9 bits (51), Expect = 8.3 Identities = 8/44 (18%), Positives = 15/44 (34%) Query: 2 TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV 45 + ++ + + + D V V E F D + GV Sbjct: 27 CWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGV 70 >2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S Length = 490 Score = 24.0 bits (51), Expect = 8.9 Identities = 5/39 (12%), Positives = 16/39 (41%) Query: 16 DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54 +E+ E + + A+ P E + + + +++ Sbjct: 221 HPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINS 259 >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, FMN, FAD, iron, 3Fe-4S, 4Fe-4S, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456 Score = 23.9 bits (51), Expect = 9.0 Identities = 6/17 (35%), Positives = 6/17 (35%) Query: 9 CILCKHTDCVEVCPVDC 25 C C C CPV Sbjct: 22 CSQCGVPFCQVHCPVSN 38 >1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} SCOP: d.131.1.2 d.131.1.2 Length = 245 Score = 23.9 bits (51), Expect = 9.0 Identities = 6/44 (13%), Positives = 10/44 (22%) Query: 2 TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV 45 + + I D + + E F E G Sbjct: 26 LFDIKPEGIQLVAIDKAHISLIKIELPKEMFKEYDVPEEFKFGF 69 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.317 0.136 0.453 Gapped Lambda K H 0.267 0.0516 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,033,600 Number of extensions: 45012 Number of successful extensions: 331 Number of sequences better than 10.0: 1 Number of HSP's gapped: 269 Number of HSP's successfully gapped: 127 Length of query: 113 Length of database: 5,693,230 Length adjustment: 76 Effective length of query: 37 Effective length of database: 3,850,686 Effective search space: 142475382 Effective search space used: 142475382 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.5 bits)