BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780416|ref|YP_003064829.1| putative ferredoxin protein
[Candidatus Liberibacter asiaticus str. psy62]
         (113 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780416|ref|YP_003064829.1| putative ferredoxin protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 113

 Score =  233 bits (595), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE
Sbjct: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
           PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT
Sbjct: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113


>gi|254780861|ref|YP_003065274.1| NADH dehydrogenase subunit I [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 163

 Score = 29.6 bits (65), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            ++G        I   +CI CG+C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118



 Score = 29.6 bits (65), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 27 YEGENFLAIHPD---ECIDCGVCEPECPVDAIKPDTEP 61
          + GE+ L  +P+    CI C +CE  CP  AI  ++ P
Sbjct: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84



 Score = 24.6 bits (52), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 103 CIYCGL--CQEACPVDAIVEGPNF 124


>gi|254781040|ref|YP_003065453.1| hypothetical protein CLIBASIA_04710 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 143

 Score = 24.6 bits (52), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 39  ECID-CGVCEPECPVDAIKPDTEPGL-ELWLKINSEYATQ 76
           EC+D C VC   CPV  +     P L  + L ++S  + Q
Sbjct: 83  ECVDICAVCSMPCPVSLMAIKANPRLSSMILIVSSRLSVQ 122


>gi|254781024|ref|YP_003065437.1| electron transfer flavoprotein-ubiquinone oxidoreductase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 554

 Score = 22.3 bits (46), Expect = 2.7,   Method: Composition-based stats.
 Identities = 8/17 (47%), Positives = 8/17 (47%)

Query: 30  ENFLAIHPDECIDCGVC 46
           EN   IH   CI C  C
Sbjct: 513 ENNYIIHAQNCIHCKAC 529


>gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 626

 Score = 21.6 bits (44), Expect = 4.6,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 6/33 (18%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEP 48
           DC+      CF   ++++ +  D+    GV EP
Sbjct: 397 DCI------CFSRTDSYIGVMIDDLTSKGVLEP 423


>gi|254780225|ref|YP_003064638.1| peptidyl-tRNA hydrolase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 189

 Score = 21.2 bits (43), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 30  ENFLAIHPDECIDCGVCE 47
           EN+L IH D  +D G   
Sbjct: 85  ENYLVIHDDLDLDFGTLR 102


>gi|254781072|ref|YP_003065485.1| hypothetical protein CLIBASIA_04870 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 190

 Score = 20.8 bits (42), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 30  ENFLAIHPDECIDCGVCEPECPV 52
           E F+ +  D+C +C +C  +  V
Sbjct: 142 EEFIELGFDQCDECDLCSEKADV 164


>gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 805

 Score = 20.8 bits (42), Expect = 7.7,   Method: Composition-based stats.
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 11  LCKHTDCVEVCPVDCFY 27
           L +  DC+ V  V C Y
Sbjct: 266 LLERNDCIVVSSVSCIY 282


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.136    0.453 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,935
Number of Sequences: 1233
Number of extensions: 2693
Number of successful extensions: 12
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of query: 113
length of database: 328,796
effective HSP length: 63
effective length of query: 50
effective length of database: 251,117
effective search space: 12555850
effective search space used: 12555850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 33 (17.3 bits)