HHsearch alignment for GI: 254780417 and conserved domain: PRK06330

>PRK06330 transcript cleavage factor/unknown domain fusion protein; Validated.
Probab=93.09  E-value=0.093  Score=31.58  Aligned_cols=94  Identities=18%  Similarity=0.261  Sum_probs=53.2

Q ss_pred             HCCCCCEEECCCCCCEEEEEEEE----EEECCCCHHHEEEECCCCCCEEEEECCCHHHCCCCCCCC-CHHHHHHHH----
Q ss_conf             13899869748785099976789----864873025302202488856998052012104543344-102467898----
Q gi|254780417|r   13 GFRTGEHIVYPAHGVGTITEIKE----QEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE-AHFVERALK----   83 (188)
Q Consensus        13 ~FkvGD~VVy~~~GVg~i~~I~~----~~i~g~~~eyy~L~~~~~~~~l~vPv~~~~~~~~R~~~~-~~e~~~l~~----   83 (188)
T Consensus       306 ~fd~g~~v~h~~wgvg~i~~~~~~gI~IDF~~K~~H~ms~~ma---~taL~~L~kd-hi~VlK~~~~Ke~l~~~i~edp~  381 (906)
T PRK06330        306 VFDTGNFVYHRTWGVGKITSISDNGIFVDFVSKRGHKLSIQMA---ITALKPLKRE-HIWVLKAIEPKEELVELFKNDIE  381 (906)
T ss_pred             EECCCCEEEEEECCCCEEEEECCCCEEEEECCCCCCCCCHHHH---HHHCCCCCCC-CEEHHHHHCCHHHHHHHHHHCHH
T ss_conf             4304867898404653234566874698600156773469999---9860536712-16422430537999999874969


Q ss_pred             --------HCCC------------CCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             --------5078------------66446655038999999985168
Q gi|254780417|r   84 --------LVRG------------KARVKRTMWSRRAQEYDAKINSG  110 (188)
Q Consensus        84 --------~l~~------------~~~~~~~~~~~R~~~~~~~lksg  110 (188)
T Consensus       382 ~~lk~~ikSf~n~~~lk~IK~ELv~~li~~~eWskWW~kaKkiLKKn  428 (906)
T PRK06330        382 WALKVIIKSYKNRMDLKDIKSELVPSLLTQSEWSKWWNKAKQILKKN  428 (906)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
T ss_conf             99999999732404288899998762179888899999999998438