HHsearch alignment for GI: 254780417 and conserved domain: PRK06330
>PRK06330 transcript cleavage factor/unknown domain fusion protein; Validated.
Probab=93.09 E-value=0.093 Score=31.58 Aligned_cols=94 Identities=18% Similarity=0.261 Sum_probs=53.2
Q ss_pred HCCCCCEEECCCCCCEEEEEEEE----EEECCCCHHHEEEECCCCCCEEEEECCCHHHCCCCCCCC-CHHHHHHHH----
Q ss_conf 13899869748785099976789----864873025302202488856998052012104543344-102467898----
Q gi|254780417|r 13 GFRTGEHIVYPAHGVGTITEIKE----QEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE-AHFVERALK---- 83 (188)
Q Consensus 13 ~FkvGD~VVy~~~GVg~i~~I~~----~~i~g~~~eyy~L~~~~~~~~l~vPv~~~~~~~~R~~~~-~~e~~~l~~---- 83 (188)
T Consensus 306 ~fd~g~~v~h~~wgvg~i~~~~~~gI~IDF~~K~~H~ms~~ma---~taL~~L~kd-hi~VlK~~~~Ke~l~~~i~edp~ 381 (906)
T PRK06330 306 VFDTGNFVYHRTWGVGKITSISDNGIFVDFVSKRGHKLSIQMA---ITALKPLKRE-HIWVLKAIEPKEELVELFKNDIE 381 (906)
T ss_pred EECCCCEEEEEECCCCEEEEECCCCEEEEECCCCCCCCCHHHH---HHHCCCCCCC-CEEHHHHHCCHHHHHHHHHHCHH
T ss_conf 4304867898404653234566874698600156773469999---9860536712-16422430537999999874969
Q ss_pred --------HCCC------------CCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf --------5078------------66446655038999999985168
Q gi|254780417|r 84 --------LVRG------------KARVKRTMWSRRAQEYDAKINSG 110 (188)
Q Consensus 84 --------~l~~------------~~~~~~~~~~~R~~~~~~~lksg 110 (188)
T Consensus 382 ~~lk~~ikSf~n~~~lk~IK~ELv~~li~~~eWskWW~kaKkiLKKn 428 (906)
T PRK06330 382 WALKVIIKSYKNRMDLKDIKSELVPSLLTQSEWSKWWNKAKQILKKN 428 (906)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
T ss_conf 99999999732404288899998762179888899999999998438