HHsearch alignment for GI: 254780417 and conserved domain: PRK10689
>PRK10689 transcription-repair coupling factor; Provisional.
Probab=99.88 E-value=2.5e-22 Score=163.92 Aligned_cols=147 Identities=18% Similarity=0.274 Sum_probs=111.1
Q ss_pred HHCCCCCEEECCCCCCEEEEEEEEEEECCCCHHHEEEECCCCCCEEEEECCCHHHCCCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 31389986974878509997678986487302530220248885699805201210454334410246789850786644
Q gi|254780417|r 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARV 91 (188)
Q Consensus 12 ~~FkvGD~VVy~~~GVg~i~~I~~~~i~g~~~eyy~L~~~~~~~~l~vPv~~~~~~~~R~~~~~~e~~~l~~~l~~~~~~ 91 (188)
T Consensus 475 ~eL~~GDyVVH~dHGIGrY~GL~~iev~G~~~DyL~LeYa-~~DkLYVPVeqL~lIsKY~G~~~~~p--~LdKLGg---- 547 (1148)
T PRK10689 475 AELHPGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYA-NDAKLYVPVSSLHLISRYAGGAEENA--PLHKLGG---- 547 (1148)
T ss_pred HHCCCCCEECCCCCCEEEEECCEEEEECCCCCCEEEEEEC-CCCEEEEEHHHHCCEEECCCCCCCCC--CCCCCCC----
T ss_conf 7678898622112575676041898408822225999976-99869856798221421148999887--6110256----
Q ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 66550389999999851689999999999998410100000126899999999999774677489989999999998504
Q gi|254780417|r 92 KRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 (188)
Q Consensus 92 ~~~~~~~R~~~~~~~lksgd~~~~a~vik~L~~~~~~k~l~~~e~~~l~~A~~~L~~Efa~~l~i~~eea~~~I~~~L~~ 171 (188)
T Consensus 548 --~~W~k~K~Kakk~i----~diA~eLl~lYA~R~~~~G~af~~d~~---~~~eFe~~FpyeET~DQl~AI~eV~~DMes 618 (1148)
T PRK10689 548 --DAWSRARQKAAEKV----RDVAAELLDIYAQRAAKEGFAFKHDRE---QYQLFCDSFPFETTPDQAQAINAVLSDMCQ 618 (1148)
T ss_pred --CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCCCCCCCCHH---HHHHHHHCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf --25899999999999----999999999999872056886789849---999999609997876899999999877638
Q ss_pred CCC
Q ss_conf 675
Q gi|254780417|r 172 KSS 174 (188)
Q Consensus 172 ~~~ 174 (188)
T Consensus 619 ~~P 621 (1148)
T PRK10689 619 PLA 621 (1148)
T ss_pred CCC
T ss_conf 867