Query gi|254780417|ref|YP_003064830.1| transcriptional regulator CarD family protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 188
No_of_seqs 115 out of 1553
Neff 7.7
Searched_HMMs 23785
Date Mon May 30 10:32:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780417.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eyq_A TRCF, transcription-rep 99.8 5.3E-20 2.2E-24 147.5 9.9 148 12-175 478-625 (1151)
2 3mlq_E Transcription-repair co 99.3 1.6E-12 6.8E-17 99.4 4.1 61 13-74 2-62 (71)
3 2d7d_A Uvrabc system protein B 97.5 5.4E-07 2.3E-11 63.9 -6.6 50 13-63 554-612 (661)
4 1gm5_A RECG; helicase, replica 66.4 6.4 0.00027 18.3 4.6 34 143-176 358-391 (780)
5 1we3_O CPN10(groes); chaperoni 41.8 14 0.00057 16.3 2.5 29 13-49 63-91 (100)
6 2jmz_A Hypothetical protein MJ 40.7 16 0.00066 15.8 2.7 50 8-58 115-164 (186)
7 1p3h_A 10 kDa chaperonin; beta 40.1 13 0.00054 16.4 2.2 29 13-49 61-89 (99)
8 2vv5_A MSCS, small-conductance 30.9 24 0.001 14.7 4.7 41 11-61 127-167 (286)
9 3nx6_A 10KDA chaperonin; bacte 28.9 26 0.0011 14.4 2.6 30 12-49 57-86 (95)
10 1khc_A DNA cytosine-5 methyltr 26.8 26 0.0011 14.4 1.9 54 10-63 8-65 (147)
11 1pcq_O Groes protein; chaperon 26.3 25 0.001 14.6 1.7 30 13-49 58-87 (97)
12 2dig_A Lamin-B receptor; tudor 23.1 33 0.0014 13.8 4.1 50 11-62 10-59 (68)
13 3gt2_A Putative uncharacterize 21.4 36 0.0015 13.5 2.3 22 11-32 87-111 (142)
14 3m9p_A MALE-specific lethal 3 21.3 36 0.0015 13.5 3.4 56 8-63 14-80 (110)
15 3llr_A DNA (cytosine-5)-methyl 20.9 37 0.0015 13.5 2.5 53 11-63 14-70 (154)
16 2cr9_A Poly [ADP-ribose] polym 20.9 37 0.0015 13.5 2.2 53 16-68 30-83 (139)
17 2cp6_A Restin; microtubule bin 20.8 37 0.0015 13.5 2.8 51 12-65 37-106 (172)
18 3dn7_A Cyclic nucleotide bindi 20.7 14 0.00061 16.1 -0.4 44 11-54 32-79 (194)
No 1
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.82 E-value=5.3e-20 Score=147.53 Aligned_cols=148 Identities=16% Similarity=0.237 Sum_probs=108.9
Q ss_pred HHCCCCCEEECCCCCCEEEEEEEEEEECCCCHHHEEEECCCCCCEEEEECCCHHHCCCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 31389986974878509997678986487302530220248885699805201210454334410246789850786644
Q gi|254780417|r 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSEAHFVERALKLVRGKARV 91 (188)
Q Consensus 12 ~~FkvGD~VVy~~~GVg~i~~I~~~~i~g~~~eyy~L~~~~~~~~l~vPv~~~~~~~~R~~~~~~e~~~l~~~l~~~~~~ 91 (188)
..+++||||||.+||||+|.|++++++.|..+||+.|+|. +++++|||+++.+.+..|...+.... - ....
T Consensus 478 ~~L~~GDyVVH~dHGIGrY~GL~~i~v~g~~~DyL~IeYa-~~dkLyVPv~ql~lIskY~g~~~~~p--~------LdkL 548 (1151)
T 2eyq_A 478 AELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLISRYAGGAEENA--P------LHKL 548 (1151)
T ss_dssp TTCCTTCEEEETTTEEEEEEEEEEEESSSCEEEEEEEECG-GGCEEEEEGGGGGGEEECCCSCSSSC--C------CCCT
T ss_pred HHCCCCCHHHHCCCCEEEEECCEEECCCCCCCCEEEEEEC-CCCEEEECHHHHHHHHHCCCCCCCCC--C------CCCC
T ss_conf 2067887113206764897132574036875552699975-89769746899877764037788887--1------6757
Q ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 66550389999999851689999999999998410100000126899999999999774677489989999999998504
Q gi|254780417|r 92 KRTMWSRRAQEYDAKINSGDLIAIAEVVRDLHRTDSQPEKSYSERQLYESALNRMVREIAAVNSISEPEAINLIEVNLSS 171 (188)
Q Consensus 92 ~~~~~~~R~~~~~~~lksgd~~~~a~vik~L~~~~~~k~l~~~e~~~l~~A~~~L~~Efa~~l~i~~eea~~~I~~~L~~ 171 (188)
....|.++...-++.+ ..-+.++++-...|...++.++....- .++.|.+.|+|.+|.+|..|++.|..+|.+
T Consensus 549 G~~~W~k~K~kakk~i----~~iA~eLl~lyA~R~~~~~~~~~~~~~---~~~~~~~~~~~~~t~~q~~a~~~i~~~~~~ 621 (1151)
T 2eyq_A 549 GGDAWSRARQKAAEKV----RDVAAELLDIYAQRAAKEGFAFKHDRE---QYQLFCDSFPFETTPDQAQAINAVLSDMCQ 621 (1151)
T ss_dssp TCSHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTSCCCCCCCCHH---HHHHHHHTCCSCCCHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCCCCCCCHH---HHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 8168999999999999----999999999999975203753045334---689999747766787799999999887606
Q ss_pred CCCC
Q ss_conf 6753
Q gi|254780417|r 172 KSSK 175 (188)
Q Consensus 172 ~~~~ 175 (188)
+.|.
T Consensus 622 ~~~~ 625 (1151)
T 2eyq_A 622 PLAM 625 (1151)
T ss_dssp SSCC
T ss_pred CCHH
T ss_conf 8556
No 2
>3mlq_E Transcription-repair coupling factor; tudor, transferase-transcription complex; 2.91A {Thermus thermophilus}
Probab=99.28 E-value=1.6e-12 Score=99.38 Aligned_cols=61 Identities=23% Similarity=0.409 Sum_probs=54.6
Q ss_pred HCCCCCEEECCCCCCEEEEEEEEEEECCCCHHHEEEECCCCCCEEEEECCCHHHCCCCCCCC
Q ss_conf 13899869748785099976789864873025302202488856998052012104543344
Q gi|254780417|r 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE 74 (188)
Q Consensus 13 ~FkvGD~VVy~~~GVg~i~~I~~~~i~g~~~eyy~L~~~~~~~~l~vPv~~~~~~~~R~~~~ 74 (188)
.|++||+|||.+||||+|.||+++++.|...||+.|+|.+ +.++|||+.+.+.+..+...+
T Consensus 2 ~f~pGD~VVH~~hGIG~y~GL~~~~~~g~~~e~l~leYa~-~dkL~VPv~~l~li~rY~g~~ 62 (71)
T 3mlq_E 2 PHMPGDYLIHPEHGVGQYLGLETREVLGVKRDYLVLRYKG-EGKLYLPVEQLPLLKRHPGTT 62 (71)
T ss_dssp --------------CEEEEEEEEEEETTEEEEEEEEEETT-TEEEEEESSSCC---------
T ss_pred CCCCCCEEEEECCCEEEEEEEEEECCCCCCCEEEEEEECC-CCEEEEEHHHHCCEEEECCCC
T ss_conf 7699989887078829981008860389142699999879-998998968905455513899
No 3
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=97.53 E-value=5.4e-07 Score=63.87 Aligned_cols=50 Identities=4% Similarity=-0.152 Sum_probs=42.8
Q ss_pred HCCCCCEEECCCCCCEEEE---------EEEEEEECCCCHHHEEEECCCCCCEEEEECCC
Q ss_conf 1389986974878509997---------67898648730253022024888569980520
Q gi|254780417|r 13 GFRTGEHIVYPAHGVGTIT---------EIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 (188)
Q Consensus 13 ~FkvGD~VVy~~~GVg~i~---------~I~~~~i~g~~~eyy~L~~~~~~~~l~vPv~~ 63 (188)
...+||+|||.+||+|+|. ||++..+.|..++|+.|.|. +++++|+|+..
T Consensus 554 dl~~gd~vVh~~hGigry~~~~~i~~~~Gi~~~~v~~~~~D~l~l~y~-~~dklyvp~~~ 612 (661)
T 2d7d_A 554 DKITKSMEIAINETKRRREQQERFNEEHGITPKTINKEIRDVIRATVA-AEDKAEYKTKA 612 (661)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCC-----------------------
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEECCCCCHHHEEEEEEC-CCCEEECCCCC
T ss_conf 047787064241046301467877773694242047650122688754-88704135777
No 4
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=66.36 E-value=6.4 Score=18.34 Aligned_cols=34 Identities=9% Similarity=0.116 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999977467748998999999999850467533
Q gi|254780417|r 143 LNRMVREIAAVNSISEPEAINLIEVNLSSKSSKT 176 (188)
Q Consensus 143 ~~~L~~Efa~~l~i~~eea~~~I~~~L~~~~~~~ 176 (188)
...|.+.|+|.||.+|..|++.|..+|.++.|..
T Consensus 358 ~~~~~~~Lpf~lT~~Q~~~~~~i~~d~~~~~~~~ 391 (780)
T 1gm5_A 358 AEEFIKSLPFKLTNAQKRAHQEIRNDMISEKPMN 391 (780)
T ss_dssp HHHHHHHSSSCCCHHHHHHHHHHHHHHHSSSCCC
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCE
T ss_conf 9999964998789889999999999861898752
No 5
>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A
Probab=41.75 E-value=14 Score=16.25 Aligned_cols=29 Identities=24% Similarity=0.589 Sum_probs=19.7
Q ss_pred HCCCCCEEECCCCCCEEEEEEEEEEECCCCHHHEEEE
Q ss_conf 1389986974878509997678986487302530220
Q gi|254780417|r 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA 49 (188)
Q Consensus 13 ~FkvGD~VVy~~~GVg~i~~I~~~~i~g~~~eyy~L~ 49 (188)
..++||+|+|+.++-.+| ++.|. +|+++.
T Consensus 63 ~vk~GD~Vlf~~~~g~~i------~~~g~--~y~ii~ 91 (100)
T 1we3_O 63 EVKEGDIVVFAKYGGTEI------EIDGE--EYVILS 91 (100)
T ss_dssp SCCTTCEEEECTTCSEEE------ECSSC--EEEEEC
T ss_pred EEEECCEEEECCCCCCEE------EECCE--EEEEEE
T ss_conf 586188999856687199------99999--999999
No 6
>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A
Probab=40.68 E-value=16 Score=15.83 Aligned_cols=50 Identities=12% Similarity=0.220 Sum_probs=32.5
Q ss_pred HHHHHHCCCCCEEECCCCCCEEEEEEEEEEECCCCHHHEEEECCCCCCEEE
Q ss_conf 334531389986974878509997678986487302530220248885699
Q gi|254780417|r 8 DAMRQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLK 58 (188)
Q Consensus 8 ~~~~~~FkvGD~VVy~~~GVg~i~~I~~~~i~g~~~eyy~L~~~~~~~~l~ 58 (188)
.......++||.|+.|..+-..+..|..++.......-|-|... +..+.+
T Consensus 115 ~~~a~~L~~GD~l~~~~~~~~~~~~i~~Ie~~~~~~~VYdl~Ve-~~hnfi 164 (186)
T 2jmz_A 115 EINAEMVKVGDYIYIPKNNTINLDEVIKVETVDYNGHIYDLTVE-DNHTYI 164 (186)
T ss_dssp EEEGGGCCTTSEEEEECSSSEEEEECCCCCEEEECSCEEEEECT-TTSEEE
T ss_pred EEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCEEEEEEEC-CCCEEE
T ss_conf 87810778998999962545305778999856399879981988-998699
No 7
>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A
Probab=40.10 E-value=13 Score=16.40 Aligned_cols=29 Identities=21% Similarity=0.558 Sum_probs=20.1
Q ss_pred HCCCCCEEECCCCCCEEEEEEEEEEECCCCHHHEEEE
Q ss_conf 1389986974878509997678986487302530220
Q gi|254780417|r 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA 49 (188)
Q Consensus 13 ~FkvGD~VVy~~~GVg~i~~I~~~~i~g~~~eyy~L~ 49 (188)
..++||+|+|+.++-.+| ++.|. +|+++.
T Consensus 61 ~vk~GD~Vl~~~~~g~~v------~~~g~--~y~ii~ 89 (99)
T 1p3h_A 61 DVAEGDTVIYSKYGGTEI------KYNGE--EYLILS 89 (99)
T ss_dssp SCCTTCEEEEECTTCEEE------EETTE--EEEEEE
T ss_pred EEECCCEEEECCCCCEEE------EECCE--EEEEEE
T ss_conf 785698999805487599------99999--999999
No 8
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane structure, membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=30.85 E-value=24 Score=14.65 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=26.8
Q ss_pred HHHCCCCCEEECCCCCCEEEEEEEEEEECCCCHHHEEEECCCCCCEEEEEC
Q ss_conf 531389986974878509997678986487302530220248885699805
Q gi|254780417|r 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPV 61 (188)
Q Consensus 11 ~~~FkvGD~VVy~~~GVg~i~~I~~~~i~g~~~eyy~L~~~~~~~~l~vPv 61 (188)
.+.|++||+|--++. .|+|++|.-+ +-.++-. ++..+++|=
T Consensus 127 ~~pf~vGD~I~i~~~-~G~V~~I~lr--------~T~i~t~-dg~~v~IPN 167 (286)
T 2vv5_A 127 FRPFRAGEYVDLGGV-AGTVLSVQIF--------STTMRTA-DGKIIVIPN 167 (286)
T ss_dssp TCSSCTTCEEESSSC-EEEEEEECSS--------EEEEECT-TSCEEEEEH
T ss_pred CCCCCCCCEEEECCC-EEEEEEEEEE--------EEEEECC-CCCEEEEEC
T ss_conf 477027888997795-6999993334--------8998879-998999981
No 9
>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV}
Probab=28.92 E-value=26 Score=14.44 Aligned_cols=30 Identities=17% Similarity=0.387 Sum_probs=19.8
Q ss_pred HHCCCCCEEECCCCCCEEEEEEEEEEECCCCHHHEEEE
Q ss_conf 31389986974878509997678986487302530220
Q gi|254780417|r 12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA 49 (188)
Q Consensus 12 ~~FkvGD~VVy~~~GVg~i~~I~~~~i~g~~~eyy~L~ 49 (188)
-..++||+|+|+.++-- +.++.|. +|+++.
T Consensus 57 ~~vk~GD~Vlf~~~~g~------~v~~~g~--~y~ii~ 86 (95)
T 3nx6_A 57 PVVKVGDKVIYGQYAGS------SYKSEGV--EYKVLR 86 (95)
T ss_dssp CSCCTTCEEEECTTCSE------EEEETTE--EEEEEE
T ss_pred CCCCCCCEEEEECCCCE------EEEECCE--EEEEEE
T ss_conf 33021789998055874------9999999--999999
No 10
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A*
Probab=26.83 E-value=26 Score=14.44 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=33.9
Q ss_pred HHHHCCCCCEEECCCCC----CEEEEEEEEEEECCCCHHHEEEECCCCCCEEEEECCC
Q ss_conf 45313899869748785----0999767898648730253022024888569980520
Q gi|254780417|r 10 MRQGFRTGEHIVYPAHG----VGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 (188)
Q Consensus 10 ~~~~FkvGD~VVy~~~G----Vg~i~~I~~~~i~g~~~eyy~L~~~~~~~~l~vPv~~ 63 (188)
+...|.+||.|-=...| -|+|.......-.......|.+.+++++....|++++
T Consensus 8 ~~~~f~vGdlVWaK~~g~pwWPa~V~~~~~~~~~~~~~~~~~V~fFG~~~~~wv~~~~ 65 (147)
T 1khc_A 8 DDKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMPGMRWVQWFGDGKFSEISADK 65 (147)
T ss_dssp SSSSCCTTCEEEEEETTTEEEEEEEECGGGTTSCCCCTTEEEEEETTTCCEEEEEGGG
T ss_pred CCCCCCCCCEEEEECCCCCCCCEEEECHHHHCCCCCCCCEEEEEEECCCCEEEEEHHH
T ss_conf 6876666878999678979898797152231033688986999995689889972899
No 11
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O
Probab=26.29 E-value=25 Score=14.56 Aligned_cols=30 Identities=7% Similarity=0.286 Sum_probs=18.0
Q ss_pred HCCCCCEEECCCCCCEEEEEEEEEEECCCCHHHEEEE
Q ss_conf 1389986974878509997678986487302530220
Q gi|254780417|r 13 GFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIA 49 (188)
Q Consensus 13 ~FkvGD~VVy~~~GVg~i~~I~~~~i~g~~~eyy~L~ 49 (188)
..++||.|+|+.+.-+ ....+.|.+ |+++.
T Consensus 58 ~vk~GD~Vl~~~~~g~-----~~~~~~g~~--y~ii~ 87 (97)
T 1pcq_O 58 DVKVGDIVIFNDGYGV-----KSEKIDNEE--VLIMS 87 (97)
T ss_dssp SCCTTCEEEECCCSSC-----EEEEETTEE--EEEEE
T ss_pred CCCCCCEEEECCCCCC-----CEEEECCEE--EEEEE
T ss_conf 1699999998365586-----379789979--99999
No 12
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=23.07 E-value=33 Score=13.76 Aligned_cols=50 Identities=16% Similarity=0.178 Sum_probs=38.7
Q ss_pred HHHCCCCCEEECCCCCCEEEEEEEEEEECCCCHHHEEEECCCCCCEEEEECC
Q ss_conf 5313899869748785099976789864873025302202488856998052
Q gi|254780417|r 11 RQGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVG 62 (188)
Q Consensus 11 ~~~FkvGD~VVy~~~GVg~i~~I~~~~i~g~~~eyy~L~~~~~~~~l~vPv~ 62 (188)
.+.|..||.|+-.=-|--.+-+++...+.++.+.| .+.| .++..+=++..
T Consensus 10 ~~ky~~Ge~VM~RWPGSsLyyev~Vls~d~~~~lY-tV~y-kDGTeleLke~ 59 (68)
T 2dig_A 10 SRKFADGEVVRGRWPGSSLYYEVEILSHDSTSQLY-TVKY-KDGTELELKEN 59 (68)
T ss_dssp CCSSCSSCEEEEECTTTCCEEEEEEEEEETTTTEE-EEEC-TTSCEEEEETT
T ss_pred CEECCCCCEEEEECCCCCEEEEEEEEEECCCCEEE-EEEE-CCCCEEECCCC
T ss_conf 50123785866206998348999997515764079-9995-47860002313
No 13
>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp}
Probab=21.40 E-value=36 Score=13.55 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=15.3
Q ss_pred HHHCCCCCEEECCCCC---CEEEEE
Q ss_conf 5313899869748785---099976
Q gi|254780417|r 11 RQGFRTGEHIVYPAHG---VGTITE 32 (188)
Q Consensus 11 ~~~FkvGD~VVy~~~G---Vg~i~~ 32 (188)
..+.++||.|++...| ||+|.|
T Consensus 87 ~~~~~pGDLvff~~~~~~HVgIyiG 111 (142)
T 3gt2_A 87 PQQARKGDLIFYGPEGTQSVAMYLG 111 (142)
T ss_dssp GGGCCTTCEEEESGGGCSEEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCEEEEEEC
T ss_conf 4579998189956999988999967
No 14
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens}
Probab=21.33 E-value=36 Score=13.54 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=29.5
Q ss_pred HHHHHHCCCCCEEE--CCCC--CCEEEEEEEE----EEE-CCCCHHHEEEECCC--CCCEEEEECCC
Q ss_conf 33453138998697--4878--5099976789----864-87302530220248--88569980520
Q gi|254780417|r 8 DAMRQGFRTGEHIV--YPAH--GVGTITEIKE----QEV-AGMKLEFFVIAFDK--DKMCLKVPVGK 63 (188)
Q Consensus 8 ~~~~~~FkvGD~VV--y~~~--GVg~i~~I~~----~~i-~g~~~eyy~L~~~~--~~~~l~vPv~~ 63 (188)
+..+..|.+|+.|. |++. |--.|+.-.- .+- .|...-.|.+.|-+ ..--=.||.+.
T Consensus 14 ~~~k~~F~~gEkVLc~h~d~~~g~llYEAKIl~v~~~~d~~~~~~~~Y~VHY~GWn~~WDEWV~e~R 80 (110)
T 3m9p_A 14 EGMKFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDH 80 (110)
T ss_dssp ----CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGGG
T ss_pred CCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHCCCHHH
T ss_conf 6877677899989998448888852278899998725587775022799986575886553238523
No 15
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, structural genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens}
Probab=20.94 E-value=37 Score=13.49 Aligned_cols=53 Identities=21% Similarity=0.083 Sum_probs=32.0
Q ss_pred HHHCCCCCEEECCCCC----CEEEEEEEEEEECCCCHHHEEEECCCCCCEEEEECCC
Q ss_conf 5313899869748785----0999767898648730253022024888569980520
Q gi|254780417|r 11 RQGFRTGEHIVYPAHG----VGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGK 63 (188)
Q Consensus 11 ~~~FkvGD~VVy~~~G----Vg~i~~I~~~~i~g~~~eyy~L~~~~~~~~l~vPv~~ 63 (188)
.+.|.+||.|-=...| -|+|.......-.......|.+.++++....+|++.+
T Consensus 14 ~~~f~~GdlVWaK~~g~pwWPa~V~~~~~~~~~~~~~~~~~V~fFG~~~~~wv~~~~ 70 (154)
T 3llr_A 14 GRGFGIGELVWGKLRGFSWWPGRIVSWWMTGRSRAAEGTRWVMWFGDGKFSVVCVEK 70 (154)
T ss_dssp SCCCCTTCEEEECCTTSCCEEEEEECGGGTTSCCCCTTEEEEEETTTCCEEEEEGGG
T ss_pred CCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEEECHHH
T ss_conf 876767868998568889998796062112343467884858984699869876888
No 16
>2cr9_A Poly [ADP-ribose] polymerase-1; PARP, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.297.1.1
Probab=20.85 E-value=37 Score=13.47 Aligned_cols=53 Identities=9% Similarity=-0.021 Sum_probs=28.7
Q ss_pred CCCEEECCCCCCEEEEEEEEEEECCCCHHHEEEECCCC-CCEEEEECCCHHHCC
Q ss_conf 99869748785099976789864873025302202488-856998052012104
Q gi|254780417|r 16 TGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKD-KMCLKVPVGKAIDIG 68 (188)
Q Consensus 16 vGD~VVy~~~GVg~i~~I~~~~i~g~~~eyy~L~~~~~-~~~l~vPv~~~~~~~ 68 (188)
.+++.||...|.--=.-+..-++......||+|+.+.+ +...|.--..-..+|
T Consensus 30 ~~~~hVy~d~g~~Y~a~L~~tdi~~n~N~fY~iQll~~~~~~~y~~~~rWGRVG 83 (139)
T 2cr9_A 30 EHSAHVLEKGGKVFSATLGLVDIVKGTNSYYKLQLLEDDKENRYWIFRSWGRVG 83 (139)
T ss_dssp TTTEEECEETTEECEEEEEEECSSSCCEEEEEEEEEEETTTTEEEEEEEECBSS
T ss_pred CCCEEEEEECCEEEEEEEECCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEC
T ss_conf 774499985998999999823567898227999999868998699999760642
No 17
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=20.80 E-value=37 Score=13.47 Aligned_cols=51 Identities=22% Similarity=0.393 Sum_probs=29.6
Q ss_pred HHCCCCCEEECCCCCCEEEEEEEEEEEC-------------CCC------HHHEEEECCCCCCEEEEECCCHH
Q ss_conf 3138998697487850999767898648-------------730------25302202488856998052012
Q gi|254780417|r 12 QGFRTGEHIVYPAHGVGTITEIKEQEVA-------------GMK------LEFFVIAFDKDKMCLKVPVGKAI 65 (188)
Q Consensus 12 ~~FkvGD~VVy~~~GVg~i~~I~~~~i~-------------g~~------~eyy~L~~~~~~~~l~vPv~~~~ 65 (188)
..|+|||.|.-+....|.|.=|....|. |+. ..|+... .+..++||+.+..
T Consensus 37 ~~~~vG~rV~v~g~~~G~VrfiG~~~fa~G~wvGVELdep~GKNdGsv~G~rYF~C~---~~~G~Fv~~s~v~ 106 (172)
T 2cp6_A 37 RELKIGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQ---PKYGLFAPVHKVT 106 (172)
T ss_dssp SCCCSSCEEEETTTEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEECCCCC---TTTEEEEEGGGCE
T ss_pred CCCEECCEEEECCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCEECCEEEEECC---CCCEEEECHHHCE
T ss_conf 786108988989984599988167689885389888047887779888999805559---9942870888937
No 18
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, PSI-2, protein structure initiative; 1.80A {Cytophaga hutchinsonii atcc 33406}
Probab=20.72 E-value=14 Score=16.08 Aligned_cols=44 Identities=9% Similarity=-0.098 Sum_probs=23.5
Q ss_pred HHHCCCCCEEECC---CCCCE-EEEEEEEEEECCCCHHHEEEECCCCC
Q ss_conf 5313899869748---78509-99767898648730253022024888
Q gi|254780417|r 11 RQGFRTGEHIVYP---AHGVG-TITEIKEQEVAGMKLEFFVIAFDKDK 54 (188)
Q Consensus 11 ~~~FkvGD~VVy~---~~GVg-~i~~I~~~~i~g~~~eyy~L~~~~~~ 54 (188)
...|+.|++++++ +.+++ .+.|..............++.+...+
T Consensus 32 ~~~~~kg~~l~~~g~~~~~~y~I~~G~v~~~~~~~~g~e~~~~~~~~~ 79 (194)
T 3dn7_A 32 LKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIEN 79 (194)
T ss_dssp EEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETT
T ss_pred EEEECCCCEEECCCCCCCEEEEEEECEEEEEEECCCCCEEEEEEECCC
T ss_conf 999899999986998564699999673889875378866643210352
Done!