HHSEARCH alignment of GI: 254780417 and SCOP domain: d2eyqa1

Alignment

Probab=99.25  E-value=4.4e-12  Score=95.07  Aligned_cols=62  Identities=23%  Similarity=0.363  Sum_probs=55.7

Q ss_pred             HHCCCCCEEECCCCCCEEEEEEEEEEECCCCHHHEEEECCCCCCEEEEECCCHHHCCCCCCCC
Q ss_conf             313899869748785099976789864873025302202488856998052012104543344
Q gi|254780417|r   12 QGFRTGEHIVYPAHGVGTITEIKEQEVAGMKLEFFVIAFDKDKMCLKVPVGKAIDIGMRKLSE   74 (188)
Q Consensus        12 ~~FkvGD~VVy~~~GVg~i~~I~~~~i~g~~~eyy~L~~~~~~~~l~vPv~~~~~~~~R~~~~   74 (188)
                      ..+++||+|||.+||||+|.|++++++.|..+||+.|+|. +++++|||+++.+.+..+...+
T Consensus        10 ~~L~~GD~VVH~dhGIG~y~GL~~~~~~g~~~e~l~leY~-~~d~LyVPv~~~~~i~kY~g~~   71 (80)
T d2eyqa1          10 AELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA-NDAKLYVPVSSLHLISRYAGGA   71 (80)
T ss_dssp             TTCCTTCEEEETTTEEEEEEEEEEEESSSCEEEEEEEECG-GGCEEEEEGGGGGGEEECCCSC
T ss_pred             HHCCCCCEEEECCCCEEEEEEEEEEECCCCCCCEEEEEEC-CCCEEEEEHHHHCCEEECCCCC
T ss_conf             7587999998802591752322785127877855999986-8995997489933033315899

SCOP domain information

class: All beta proteins
fold: SH3-like barrel
superfamily: CarD-like
family: CarD-like
domain: Transcription-repair coupling factor, RRCF, middle domain
species: Escherichia coli [TaxId: 562]